RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy5734
         (205 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 30.4 bits (68), Expect = 0.43
 Identities = 30/190 (15%), Positives = 56/190 (29%), Gaps = 46/190 (24%)

Query: 35  FLVPFVIEPACTTIMREF-DEVPATCETIQVENLRGASNCSWTSCREGCTREI-YECTQI 92
            LVP       + +  +F   +P   E    ++         T+  E   + + Y     
Sbjct: 20  LLVPTASFFIASQLQEQFNKILPEPTEGFAADD-------EPTTPAELVGKFLGY----- 67

Query: 93  TVSYKVSVNTSVQSTITAQSLRL-YNRFRRAVLGEDDVLLPSFEDNFLETPAIPEGNSSE 151
            VS  V  +   Q     Q L L    F    L  +D+   +     L+        + E
Sbjct: 68  -VSSLVEPSKVGQ---FDQVLNLCLTEFENCYLEGNDI--HALAAKLLQENDTTLVKTKE 121

Query: 152 W--DFVGAKFFPNVKGCGYPPYLNCSIFH-------KKYAVVGKQ-------------YP 189
              +++ A+         +    N ++F        +  A+ G Q             Y 
Sbjct: 122 LIKNYITARIMAKRP---FDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQ 178

Query: 190 CYYSTVEPAL 199
            Y+  V   +
Sbjct: 179 TYHVLVGDLI 188


>2jv7_A CBP, calcium-binding protein; virulence factor, homodimer, all
           alpha helical, glycoprotein, secreted, metal binding
           protein; NMR {Ajellomyces capsulatus}
          Length = 78

 Score = 27.1 bits (59), Expect = 1.3
 Identities = 13/71 (18%), Positives = 23/71 (32%), Gaps = 5/71 (7%)

Query: 42  EPACTTIMREFDEVPATCETIQVENLRGASNCSWTSCREGCTREIYECTQITVSYKVSVN 101
           +P+      +++E            L  A+NC W +C    +     C        + V 
Sbjct: 2   QPSVGDAFDKYNEAVRV-----FTQLSSAANCDWAACLSSLSASSAACIAAVGELGLDVP 56

Query: 102 TSVQSTITAQS 112
             +    TA S
Sbjct: 57  LDLACAATATS 67


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 26.5 bits (57), Expect = 5.1
 Identities = 9/30 (30%), Positives = 10/30 (33%), Gaps = 12/30 (40%)

Query: 172 LNCSIFHKKYAVVGKQYPCYYSTVEPALVI 201
           L  S+  K YA              PAL I
Sbjct: 25  LQASL--KLYA------D----DSAPALAI 42


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.323    0.138    0.427 

Gapped
Lambda     K      H
   0.267   0.0631    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,109,783
Number of extensions: 171549
Number of successful extensions: 281
Number of sequences better than 10.0: 1
Number of HSP's gapped: 280
Number of HSP's successfully gapped: 7
Length of query: 205
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 116
Effective length of database: 4,216,824
Effective search space: 489151584
Effective search space used: 489151584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.2 bits)