RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5734
         (205 letters)



>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white
           cedar (Juniperus ashei) [TaxId: 13101]}
          Length = 346

 Score = 26.6 bits (58), Expect = 2.6
 Identities = 7/25 (28%), Positives = 11/25 (44%)

Query: 72  NCSWTSCREGCTREIYECTQITVSY 96
           + S + C +G        T IT+S 
Sbjct: 165 HNSLSDCSDGLIDVTLGSTGITISN 189


>d1jb0b_ f.29.1.1 (B:) Apoprotein a2, PsaB {Synechococcus elongatus
           [TaxId: 32046]}
          Length = 739

 Score = 26.3 bits (58), Expect = 2.8
 Identities = 6/21 (28%), Positives = 10/21 (47%)

Query: 15  LFYTTAFFILLAIFSLFGFLF 35
           L+    F ++LA  +LF    
Sbjct: 134 LYQGAIFLLILASLALFAGWL 154


>d1jb0a_ f.29.1.1 (A:) Apoprotein a1, PsaA {Synechococcus elongatus
           [TaxId: 32046]}
          Length = 743

 Score = 25.6 bits (56), Expect = 5.8
 Identities = 6/26 (23%), Positives = 11/26 (42%), Gaps = 1/26 (3%)

Query: 15  LFYTTAFFILLAIFSLF-GFLFLVPF 39
           L+ T    +++A   LF G+      
Sbjct: 146 LYCTAIGGLVMAGLMLFAGWFHYHKR 171


>d2bs2c1 f.21.2.1 (C:1-254) Fumarate reductase respiratory complex
           cytochrome b subunit, FrdC {Wolinella succinogenes
           [TaxId: 844]}
          Length = 254

 Score = 25.3 bits (55), Expect = 5.9
 Identities = 6/26 (23%), Positives = 13/26 (50%)

Query: 11  REKLLFYTTAFFILLAIFSLFGFLFL 36
            +KL    +AF I+L + +   ++  
Sbjct: 209 LKKLKTLMSAFLIVLGLLTFGAYVKK 234


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.138    0.427 

Gapped
Lambda     K      H
   0.267   0.0551    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 774,661
Number of extensions: 35238
Number of successful extensions: 72
Number of sequences better than 10.0: 1
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 7
Length of query: 205
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 124
Effective length of database: 1,295,466
Effective search space: 160637784
Effective search space used: 160637784
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.8 bits)