BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5735
(247 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3S7B|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
pdb|3S7D|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
pdb|3S7F|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
pdb|3S7J|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
Length = 433
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 33 TGESSKTRFIGAGIFPTLSMFNHSCEPNIVRYFRGTMVYVNLCKNFKKGDQICENYGPLY 92
T E + +G+ IFP +++ NHSC PN++ ++GT+ V + K G+++ +Y L
Sbjct: 185 TIEDEELSHLGSAIFPDVALMNHSCCPNVIVTYKGTLAEVRAVQEIKPGEEVFTSYIDLL 244
Query: 93 SQVRKTERQNTLKSQYWFDCHCIAC 117
+R + L+ Y+F C C C
Sbjct: 245 YPTE--DRNDRLRDSYFFTCECQEC 267
>pdb|3RIB|A Chain A, Human Lysine Methyltransferase Smyd2 In Complex With
Adohcy
pdb|3RIB|B Chain B, Human Lysine Methyltransferase Smyd2 In Complex With
Adohcy
Length = 441
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 33 TGESSKTRFIGAGIFPTLSMFNHSCEPNIVRYFRGTMVYVNLCKNFKKGDQICENYGPLY 92
T E + +G+ IFP +++ NHSC PN++ ++GT+ V + K G+++ +Y L
Sbjct: 185 TIEDEELSHLGSAIFPDVALMNHSCCPNVIVTYKGTLAEVRAVQEIKPGEEVFTSYIDLL 244
Query: 93 SQVRKTERQNTLKSQYWFDCHCIAC 117
+R + L+ Y+F C C C
Sbjct: 245 YPTE--DRNDRLRDSYFFTCECQEC 267
>pdb|3TG4|A Chain A, Structure Of Smyd2 In Complex With Sam
pdb|3TG5|A Chain A, Structure Of Smyd2 In Complex With P53 And Sah
Length = 433
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 33 TGESSKTRFIGAGIFPTLSMFNHSCEPNIVRYFRGTMVYVNLCKNFKKGDQICENYGPLY 92
T E + +G+ IFP +++ NHSC PN++ ++GT+ V + K G+++ +Y L
Sbjct: 185 TIEDEELSHLGSAIFPDVALMNHSCCPNVIVTYKGTLAEVRAVQEIKPGEEVFTSYIDLL 244
Query: 93 SQVRKTERQNTLKSQYWFDCHCIAC 117
+R + L+ Y+F C C C
Sbjct: 245 YPTE--DRNDRLRDSYFFTCECQEC 267
>pdb|3QWV|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase
Smyd2 In Complex With The Cofactor Product Adohcy
pdb|3QWW|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase
Smyd2 In Complex With The Methyltransferase Inhibitor
Sinefungin
Length = 433
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 33 TGESSKTRFIGAGIFPTLSMFNHSCEPNIVRYFRGTMVYVNLCKNFKKGDQICENYGPLY 92
T E + +G+ IFP +++ NHSC PN++ ++GT+ V + GD++ +Y L
Sbjct: 185 TIEDEELSHLGSAIFPDVALMNHSCCPNVIVTYKGTLAEVRAVQEIHPGDEVFTSYIDLL 244
Query: 93 SQVRKTERQNTLKSQYWFDCHCIAC 117
+R + L+ Y+F C C C
Sbjct: 245 YPTE--DRNDRLRDSYFFTCECREC 267
>pdb|3RU0|A Chain A, Cocrystal Structure Of Human Smyd3 With Inhibitor
Sinefungin Bound
pdb|3RU0|B Chain B, Cocrystal Structure Of Human Smyd3 With Inhibitor
Sinefungin Bound
Length = 438
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 42 IGAGIFPTLSMFNHSCEPNIVRYFRGTMVYVNLCKNFKKGDQICENYGPLYSQVRKTERQ 101
+G G++P++S+ NHSC+PN F G + + ++ + G+++ Y L + ER+
Sbjct: 195 VGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTICY--LDMLMTSEERR 252
Query: 102 NTLKSQYWFDCHCIACE 118
L+ QY F+C C C+
Sbjct: 253 KQLRDQYCFECDCFRCQ 269
>pdb|3OXF|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form I)
pdb|3OXF|B Chain B, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form I)
Length = 436
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 42 IGAGIFPTLSMFNHSCEPNIVRYFRGTMVYVNLCKNFKKGDQICENYGPLYSQVRKTERQ 101
+G G++P++S+ NHSC+PN F G + + ++ + G+++ Y L + ER+
Sbjct: 193 VGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTICY--LDMLMTSEERR 250
Query: 102 NTLKSQYWFDCHCIACE 118
L+ QY F+C C C+
Sbjct: 251 KQLRDQYCFECDCFRCQ 267
>pdb|3PDN|A Chain A, Crystal Structure Of Smyd3 In Complex With
Methyltransferase Inhibitor Sinefungin
pdb|3OXL|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form Ii)
Length = 428
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 42 IGAGIFPTLSMFNHSCEPNIVRYFRGTMVYVNLCKNFKKGDQICENYGPLYSQVRKTERQ 101
+G G++P++S+ NHSC+PN F G + + ++ + G+++ Y L + ER+
Sbjct: 193 VGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTICY--LDMLMTSEERR 250
Query: 102 NTLKSQYWFDCHCIACE 118
L+ QY F+C C C+
Sbjct: 251 KQLRDQYCFECDCFRCQ 267
>pdb|3QWP|A Chain A, Crystal Structure Of Set And Mynd Domain Containing 3;
Zinc Finger Mynd Domain-Containing Protein 1
Length = 429
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 42 IGAGIFPTLSMFNHSCEPNIVRYFRGTMVYVNLCKNFKKGDQICENYGPLYSQVRKTERQ 101
+G G++P++S+ NHSC+PN F G + + ++ + G+++ Y L + ER+
Sbjct: 194 VGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTICY--LDMLMTSEERR 251
Query: 102 NTLKSQYWFDCHCIACE 118
L+ QY F+C C C+
Sbjct: 252 KQLRDQYCFECDCFRCQ 268
>pdb|3OXG|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form Iii)
Length = 464
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query: 42 IGAGIFPTLSMFNHSCEPNIVRYFRGTMVYVNLCKNFKKGDQICENYGPLYSQVRKTERQ 101
+G G++P++S+ NHSC+PN F G + + ++ + G+++ Y L + ER+
Sbjct: 229 VGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTICY--LDMLMTSEERR 286
Query: 102 NTLKSQYWFDCHCIACE 118
L+ QY F+C C C+
Sbjct: 287 KQLRDQYCFECDCFRCQ 303
>pdb|3MEK|A Chain A, Crystal Structure Of Human Histone-Lysine N-
Methyltransferase Smyd3 In Complex With S-Adenosyl-L-
Methionine
Length = 429
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Query: 42 IGAGIFPTLSMFNHSCEPNIVRYFRGTMVYVNLCKNFKKGDQICENYGPLYSQVRKTERQ 101
+G G++P++S+ NHSC+PN F G + + ++ + G+++ Y L ER+
Sbjct: 194 VGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTICY--LDXLXTSEERR 251
Query: 102 NTLKSQYWFDCHCIACE 118
L+ QY F+C C C+
Sbjct: 252 KQLRDQYCFECDCFRCQ 268
>pdb|3N71|A Chain A, Crystal Structure Of Cardiac Specific Histone
Methyltransferase Smyd1
Length = 490
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 38/88 (43%), Gaps = 11/88 (12%)
Query: 42 IGAGIFPTLSMFNHSCEPNIVRYFRG-------TMVYVNLCKNFKKGDQICENYGPLYSQ 94
+G GIFP L + NH C PN F +M + + + +I E S
Sbjct: 193 VGVGIFPNLGLVNHDCWPNCTVIFNNGNHEAVKSMFHTQMRIELRALGKISEGEELTVSY 252
Query: 95 VR----KTERQNTLKSQYWFDCHCIACE 118
+ ER+ LK QY+FDC C C+
Sbjct: 253 IDFLHLSEERRRQLKKQYYFDCSCEHCQ 280
>pdb|3I2W|A Chain A, Crystal Structure Of EfcF-Bar Domain Of Drosophila
SyndapinPACSIN
pdb|3I2W|B Chain B, Crystal Structure Of EfcF-Bar Domain Of Drosophila
SyndapinPACSIN
Length = 290
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 39/90 (43%), Gaps = 4/90 (4%)
Query: 39 TRFIGAGIFPTLSMFN--HSCEPNIVRYFRGTMVYVNLCKNFKKGDQICENYGPLYSQVR 96
T++ I S+F + E +++F+ + V+ C + K + + Y +
Sbjct: 201 TKYNSVYIEDXTSVFEKCQTFEKTRLQFFKEILFNVHSCLDLTKVQSLPQIYEEFSHTIN 260
Query: 97 KTERQNTLKSQYWFDCHCIACEHDWPLFEE 126
++Q LK +W + H I +WP F E
Sbjct: 261 NADQQKDLK--WWSNNHGINXAXNWPSFVE 288
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.137 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,714,842
Number of Sequences: 62578
Number of extensions: 257328
Number of successful extensions: 763
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 741
Number of HSP's gapped (non-prelim): 13
length of query: 247
length of database: 14,973,337
effective HSP length: 96
effective length of query: 151
effective length of database: 8,965,849
effective search space: 1353843199
effective search space used: 1353843199
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)