RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5735
(247 letters)
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND
domain, zinc finger MYND domain-containin 1, structural
genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A*
3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Length = 429
Score = 118 bits (295), Expect = 4e-31
Identities = 40/226 (17%), Positives = 84/226 (37%), Gaps = 14/226 (6%)
Query: 13 LLHQIQCLQFNCHEVADLVGTGESSKTRFIGAGIFPTLSMFNHSCEPNIVRYFRGTMVYV 72
L + N + + ++ + +G G++P++S+ NHSC+PN F G + +
Sbjct: 172 LFEAFAKVICNSFTICN-------AEMQEVGVGLYPSISLLNHSCDPNCSIVFNGPHLLL 224
Query: 73 NLCKNFKKGDQICENYGPLYSQVRKTERQNTLKSQYWFDCHCIACEHDWPLFEEMQAAQD 132
++ + G+++ Y + ER+ L+ QY F+C C C+ + + D
Sbjct: 225 RAVRDIEVGEELTICYLDMLM--TSEERRKQLRDQYCFECDCFRCQTQDKDADMLTG--D 280
Query: 133 LRFRCETENCHNVVKVATNTTQFMIKCDKCDQFINIFKGL---KNLQDTESLFRLANNYK 189
+ E + ++ ++ C I+ N+ + L +
Sbjct: 281 EQVWKEVQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACI 340
Query: 190 ENGLYEKALEKFTQLMTLLDENLVPPYRDYILCQRSIQTCFLNLGQ 235
GL E+AL T+ M + + + L+ G
Sbjct: 341 NLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGM 386
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90,
transferase-transferase inhibitor; HET: SFG; 1.80A {Mus
musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A*
3tg4_A* 3tg5_A* 3rib_A*
Length = 433
Score = 109 bits (273), Expect = 5e-28
Identities = 38/237 (16%), Positives = 87/237 (36%), Gaps = 23/237 (9%)
Query: 13 LLHQIQCLQFNCHEVADLVGTGESSKTRFIGAGIFPTLSMFNHSCEPNIVRYFRGTMVYV 72
L+ + N + D + +G+ IFP +++ NHSC PN++ ++GT+ V
Sbjct: 172 LVVLFAQVNCNGFTIED-------EELSHLGSAIFPDVALMNHSCCPNVIVTYKGTLAEV 224
Query: 73 NLCKNFKKGDQICENYGPLYSQVRKTERQNTLKSQYWFDCHCIACEHDWPLFEEMQAAQD 132
+ GD++ +Y L +R + L+ Y+F C C C ++ +
Sbjct: 225 RAVQEIHPGDEVFTSYIDLLY--PTEDRNDRLRDSYFFTCECRECTTKDKDKAKV-EVRK 281
Query: 133 LRFRCETENCHNVVKVATNTTQFMIKCDKCDQFINIFKGLKNLQD-------------TE 179
L + E ++V+ A N + + + + + Q+
Sbjct: 282 LSSPPQAEAIRDMVRYARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLH 341
Query: 180 SLFRLANNYKENGLYEKALEKFTQLMTLLDENLVPPYRDYILCQRSIQTCFLNLGQK 236
+++ +E AL+ +++ ++ + + ++ L K
Sbjct: 342 MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENK 398
>3n71_A Histone lysine methyltransferase SMYD1; heart development,
transcription; HET: SFG MES; 2.30A {Mus musculus}
Length = 490
Score = 95.8 bits (237), Expect = 6e-23
Identities = 42/258 (16%), Positives = 84/258 (32%), Gaps = 36/258 (13%)
Query: 4 ELEEFIGGLLLHQIQCLQFNCHEVADLVGTGESSKTRFIGAGIFPTLSMFNHSCEPNIVR 63
+ ++F + H + N ++D G + +G GIFP L + NH C PN
Sbjct: 161 QSQQFSMQYISHIFGVINCNGFTLSDQRGL------QAVGVGIFPNLGLVNHDCWPNCTV 214
Query: 64 YFRG-------------TMVYVNLCKNFKKGDQICENYGPLYSQVRKTERQNTLKSQYWF 110
F + + +G+++ +Y ER+ LK QY+F
Sbjct: 215 IFNNGNHEAVKSMFHTQMRIELRALGKISEGEELTVSYIDFLH--LSEERRRQLKKQYYF 272
Query: 111 DCHCIACEHDWPLFEEMQAAQDLRFRCETENCHNVVKVATNTTQFMIKCDKC---DQFIN 167
DC C C+ + A +D + E +++ + +T + + K + +
Sbjct: 273 DCSCEHCQKGLKDDLFLAAKED--PKPSQEVVKEMIQFSKDTLEKIDKARSEGLYHEVVK 330
Query: 168 IFKGL----------KNLQDTESLFRLANNYKENGLYEKALEKFTQLMTLLDENLVPPYR 217
+ + NL L + YE+A +++ +
Sbjct: 331 LCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNA 390
Query: 218 DYILCQRSIQTCFLNLGQ 235
+ + G
Sbjct: 391 QLGMAVMRAGLTNWHAGH 408
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 46.8 bits (110), Expect = 3e-06
Identities = 38/222 (17%), Positives = 67/222 (30%), Gaps = 61/222 (27%)
Query: 38 KTRFIGAGIFP--------TLSMFNHSCEPNIVRYFRGTMVYVNLCKNFKKGDQI----- 84
+ F +FP LS+ + V + +L + K I
Sbjct: 372 RKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI 431
Query: 85 -------CENYGPL-------YSQVRKTERQNTLK---SQYWFDC---HCIACEHD--WP 122
EN L Y+ + + + + QY++ H EH
Sbjct: 432 YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMT 491
Query: 123 LFEEMQAAQDLRF-----RCETENCHNVVKVATNTTQFMIK-----CDKCDQFINIFKGL 172
LF + D RF R ++ N NT Q + CD ++ + +
Sbjct: 492 LFRMV--FLDFRFLEQKIRHDSTAW-NASGSILNTLQQLKFYKPYICDNDPKYERLVNAI 548
Query: 173 KN-LQDTES---------LFRLANNYKENGLYEKALEKFTQL 204
+ L E L R+A ++ ++E E Q+
Sbjct: 549 LDFLPKIEENLICSKYTDLLRIALMAEDEAIFE---EAHKQV 587
Score = 36.0 bits (82), Expect = 0.011
Identities = 39/267 (14%), Positives = 86/267 (32%), Gaps = 80/267 (29%)
Query: 5 LEEFIGGLLLHQIQCLQ---FNCHEVADLVGTG-ESSKTRFIGAGIFPTLSMFNHSCEPN 60
+ F+ +Q + + E+ ++ + S T + F TL
Sbjct: 26 EDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL----FWTLLSKQE----E 77
Query: 61 IVRYFRGTMVYVNLCKNFKKGDQICENYGPLYSQVRKTERQNTLKSQYWFDCHCIACEHD 120
+V+ F ++ +I NY L S ++ +RQ ++ ++ + + +D
Sbjct: 78 MVQKF------------VEEVLRI--NYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY-ND 122
Query: 121 WPLFEEM------------QAAQDLRFRCETENCHNVV--------K--VATNTTQ---- 154
+F + QA +LR NV+ K VA +
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELR------PAKNVLIDGVLGSGKTWVALDVCLSYKV 176
Query: 155 --------FMIKCDKCDQFINIFKGLKNLQDTESLFRLANNYKENGLYEKALEKFTQLMT 206
F + C+ + + L+ L L+++ N+ + ++
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQKL-----LYQIDPNWTSRSDHSSNIK------- 224
Query: 207 LLDENLVPPYRDYILCQRSIQTCFLNL 233
L + + +L + + C L L
Sbjct: 225 -LRIHSIQAELRRLLKSKPYENCLLVL 250
Score = 34.8 bits (79), Expect = 0.028
Identities = 33/233 (14%), Positives = 66/233 (28%), Gaps = 47/233 (20%)
Query: 17 IQCLQFNCHEVADLVGTGESSKTRFIGAGIFPTLSMFNHSC---EPNIVRYFRGTMVYVN 73
+C ++ L+ T T F+ A +S+ +HS +
Sbjct: 259 WNAFNLSC-KI--LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL------- 308
Query: 74 LCKNFKKGD---QICENYGPLY-SQVRKTERQNTLKSQYWFDCHCIACEHDWPLFEEMQA 129
+ + D ++ P S + ++ R W +C +
Sbjct: 309 KYLDCRPQDLPREVLTT-NPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE 367
Query: 130 AQDLR--------FRCETENCHNVVKVATNTTQFM---IKCDKCDQFINIF--KGLKNLQ 176
+ R F + + T + + +N L Q
Sbjct: 368 PAEYRKMFDRLSVFP---PS----AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ 420
Query: 177 DTESLFRLANNY--------KENGLYEKALEKFTQLMTLLDENLVPPYRD-YI 220
ES + + Y E L+ ++ + T ++L+PPY D Y
Sbjct: 421 PKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF 473
Score = 32.1 bits (72), Expect = 0.20
Identities = 31/223 (13%), Positives = 61/223 (27%), Gaps = 61/223 (27%)
Query: 49 TLSMFNHSC-------EPNIVRYFRGTMVYVNLCKNFKKG---DQICENYGPLYSQVRKT 98
+ FN SC + + + D++ L +
Sbjct: 258 AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS----LLLKYLDC 313
Query: 99 ERQNTLKSQYWFDCHCIACEHDWPLFEEMQAAQDLRFRCETENCHNVVKVATNTTQF--M 156
Q L + + P + A ++ T
Sbjct: 314 RPQ-DLPRE--------VLTTN-PRRLSIIAES--------------IRDGLATWDNWKH 349
Query: 157 IKCDKCDQFINIFKGLKNLQDTESLFRLANNYKENGLYEKALEKFTQLMTLL-------- 208
+ CDK I L L+ E +R + ++ + T L++L+
Sbjct: 350 VNCDKLTTIIESS--LNVLEPAE--YR--KMFDRLSVFPPSAHIPTILLSLIWFDVIKSD 403
Query: 209 DENLVPPYRDYILCQR-------SIQTCFLNLGQKCLNKEDMN 244
+V Y L ++ SI + +L L K N+ ++
Sbjct: 404 VMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH 446
Score = 28.3 bits (62), Expect = 3.4
Identities = 48/306 (15%), Positives = 84/306 (27%), Gaps = 90/306 (29%)
Query: 2 VIELEEFIGGLLLHQIQCLQFNC--HEVADLVGTGESSKTRFIGAGIFP-TLSMFNHSCE 58
I L+ L +++ L DL E P LS+ S
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRPQDL--PREVLT-------TNPRRLSIIAESIR 338
Query: 59 PNIVR--YFRGTMVYVNLCKNFKKGDQIC------ENYGPLYSQ-------VRKTERQNT 103
+ ++ +VN C + Y ++ +
Sbjct: 339 DGLATWDNWK----HVN-CDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPT--IL 391
Query: 104 LKSQYWF-----DCHCIACE-HDWPLFEEMQA-------AQDLRFRCETEN---CHNVVK 147
L S WF D + + H + L E+ + L + + EN H +
Sbjct: 392 L-SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSI- 449
Query: 148 VATNTTQFMIKCDKC---------DQFINIFKG--LKNLQDTE--SLFR--------LAN 186
+ I DQ+ G LKN++ E +LFR L
Sbjct: 450 ----VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQ 505
Query: 187 NYKENGLYEKALEKFTQLMTLLDENLVPPYRDYI-----LCQRSIQTC--FL-NLGQKCL 238
+ + A TL Y+ YI +R + FL + + +
Sbjct: 506 KIRHDSTAWNASGSILN--TLQQLKF---YKPYICDNDPKYERLVNAILDFLPKIEENLI 560
Query: 239 NKEDMN 244
+ +
Sbjct: 561 CSKYTD 566
>3qxy_A N-lysine methyltransferase SETD6; epigenetics, protein lysine
methyltransferase, transferase, network VIA methyllysine
signaling; HET: SAM; 2.09A {Homo sapiens} PDB: 3rc0_A*
Length = 449
Score = 42.2 bits (98), Expect = 8e-05
Identities = 10/63 (15%), Positives = 19/63 (30%)
Query: 29 DLVGTGESSKTRFIGAGIFPTLSMFNHSCEPNIVRYFRGTMVYVNLCKNFKKGDQICENY 88
E + + P + NH N + + + + KG +I Y
Sbjct: 202 QEPLEEEEDEKEPNSPVMVPAADILNHLANHNANLEYSANCLRMVATQPIPKGHEIFNTY 261
Query: 89 GPL 91
G +
Sbjct: 262 GQM 264
>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer;
NMR {Paramecium bursaria chlorella virus 1} SCOP:
b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A*
Length = 119
Score = 39.6 bits (93), Expect = 1e-04
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 51 SMFNHSCEPNI-VRYFRGTM-VYVNLCKNFKKGDQICENYGPLYSQVRKTERQN 102
++FNHS +PN G + + K G++I +YG Y R QN
Sbjct: 66 AIFNHSKDPNARHELTAGLKRMRIFTIKPIAIGEEITISYGDDYWLSRPRLTQN 119
>3smt_A Histone-lysine N-methyltransferase SETD3; histone
methyltransferase, histone modification, LYSI
translational modification, structural genomics; HET:
SAM; 2.04A {Homo sapiens}
Length = 497
Score = 38.3 bits (88), Expect = 0.001
Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
Query: 48 PTLSMFNHSCEPNIVRYFRGTMVYVNLC-KNFKKGDQICENYGPL 91
P M NH+ Y + ++F+ G+QI YG
Sbjct: 271 PLWDMCNHTNGLITTGYNLEDDRCECVALQDFRAGEQIYIFYGTR 315
>3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor,
variegation 4-20 homolog 2, structural genomics,
structural genomics consortium, SGC; HET: SAM; 1.80A
{Homo sapiens}
Length = 247
Score = 35.0 bits (80), Expect = 0.013
Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 14/82 (17%)
Query: 39 TRFIGAGIFPTLSMF-NHSCEPNIVRYFRG-TMVYVNLCKNFKKGDQICENYGPLYSQVR 96
TR A ++ + F NH C+PN V + ++ + GD++ YG + +
Sbjct: 165 TRKRSAQLWLGPAAFINHDCKPNCKFVPADGNAACVKVLRDIEPGDEVTCFYGEGFFGEK 224
Query: 97 KTERQNTLKSQYWFDCHCIACE 118
C C CE
Sbjct: 225 N------------EHCECHTCE 234
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting
complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin,
ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Length = 330
Score = 34.2 bits (79), Expect = 0.029
Identities = 10/77 (12%), Positives = 24/77 (31%), Gaps = 9/77 (11%)
Query: 161 KCDQFINIFKGLKNLQDT-ESLFRLANNYKENGLYEKALEKFTQLMTLLDENLVPPYRDY 219
I + + LQ+ + + LA + N ++ + + +M P+
Sbjct: 4 NKPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD------PFHAS 57
Query: 220 ILCQRSIQTCFLNLGQK 236
L + L +
Sbjct: 58 CLPVHI--GTLVELNKA 72
>3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone
methyltransferase, transcription regulat histone lysine,
SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo
sapiens}
Length = 273
Score = 33.9 bits (77), Expect = 0.035
Identities = 21/83 (25%), Positives = 30/83 (36%), Gaps = 16/83 (19%)
Query: 39 TRFIGAGIFPTLSMF-NHSCEPN--IVRYFRGTMVYVNLCKNFKKGDQICENYGPLYSQV 95
TR A ++ + F NH C PN V R T L ++ + G++I YG +
Sbjct: 194 TRKNCAQLWLGPAAFINHDCRPNCKFVSTGRDTACVKAL-RDIEPGEEISCYYGDGFFGE 252
Query: 96 RKTERQNTLKSQYWFDCHCIACE 118
C C CE
Sbjct: 253 NNEF------------CECYTCE 263
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C
biogenesis, O157:H7 EDL933, formate- nitrite reductase
complex, lyase; 2.05A {Escherichia coli}
Length = 177
Score = 33.3 bits (76), Expect = 0.035
Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 5/52 (9%)
Query: 176 QDTESLFRLANNYKENGLYEKALEKFTQLMTLLDENLVPPYRDYILCQRSIQ 227
+ +L LA++ Y +A+E + ++M L + SI
Sbjct: 113 NEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR--INRTQLV---ESIN 159
Score = 31.8 bits (72), Expect = 0.12
Identities = 10/36 (27%), Positives = 15/36 (41%)
Query: 176 QDTESLFRLANNYKENGLYEKALEKFTQLMTLLDEN 211
Q++E L Y Y +L + Q + L EN
Sbjct: 42 QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGEN 77
>2h21_A Ribulose-1,5 bisphosphate carboxylase/oxygenase; SET domain,
protein lysine methyltransferase, transferase; HET: SAM;
2.45A {Pisum sativum} SCOP: a.166.1.1 b.85.7.3 PDB:
2h23_A* 2h2e_A* 2h2j_A* 1p0y_A* 1ozv_A* 1mlv_A*
Length = 440
Score = 33.7 bits (76), Expect = 0.045
Identities = 12/82 (14%), Positives = 23/82 (28%), Gaps = 11/82 (13%)
Query: 23 NCHEVADLVGTGESSKTRFIGAGIFPTLSMFNHSCEPNIVRYFRGTMVYVNLC------- 75
+ ++ + S+ R + P + NHS + L
Sbjct: 163 DFFWAFGILRSRAFSRLRNENLVVVPMADLINHSAGVTTEDHAYEVKGAAGLFSWDYLFS 222
Query: 76 ----KNFKKGDQICENYGPLYS 93
+ K G+Q+ Y S
Sbjct: 223 LKSPLSVKAGEQVYIQYDLNKS 244
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide
repeat, TPR, chapero virulence; 2.15A {Shigella
flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Length = 151
Score = 32.8 bits (75), Expect = 0.046
Identities = 12/62 (19%), Positives = 21/62 (33%), Gaps = 5/62 (8%)
Query: 151 NTTQFMIKCDKCDQFINIFKGLKNL-----QDTESLFRLANNYKENGLYEKALEKFTQLM 205
N T+ IN LK++ + ++ A ++ G E+A F L
Sbjct: 4 NITENESISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLC 63
Query: 206 TL 207
Sbjct: 64 IY 65
Score = 30.1 bits (68), Expect = 0.34
Identities = 12/82 (14%), Positives = 25/82 (30%), Gaps = 15/82 (18%)
Query: 166 INIFKGLKNL--QDTESLFRLANNYKENGLYEKALEKFTQLMTLLDENLVPPYRDYILCQ 223
F+ L + + + LA Y+ +++A + + L + P +
Sbjct: 56 EVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH------ 109
Query: 224 RSIQTCFLNLGQ-----KCLNK 240
C L L +C
Sbjct: 110 --TGQCQLRLKAPLKAKECFEL 129
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic
reticulum, protein folding, tetratricopeptiderepeat, J
domain, unfolded protein respons; 3.00A {Homo sapiens}
PDB: 2y4u_A
Length = 450
Score = 33.1 bits (76), Expect = 0.080
Identities = 7/31 (22%), Positives = 11/31 (35%)
Query: 173 KNLQDTESLFRLANNYKENGLYEKALEKFTQ 203
+++ D E L G AL +F
Sbjct: 21 QSMADVEKHLELGKKLLAAGQLADALSQFHA 51
Score = 32.7 bits (75), Expect = 0.092
Identities = 16/79 (20%), Positives = 25/79 (31%), Gaps = 5/79 (6%)
Query: 158 KCDKCD-QFINIFKGLKNLQDTESLFRLANNYKENGLYEKALEKFTQLMTLLDENLVPPY 216
+C K D F K ++ L A +G Y A K+ +M E + Y
Sbjct: 236 ECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEY 293
Query: 217 RDYILCQRSIQTCFLNLGQ 235
+ CF +
Sbjct: 294 TVRSKERICH--CFSKDEK 310
Score = 27.7 bits (62), Expect = 3.6
Identities = 6/67 (8%), Positives = 18/67 (26%)
Query: 176 QDTESLFRLANNYKENGLYEKALEKFTQLMTLLDENLVPPYRDYILCQRSIQTCFLNLGQ 235
T + + + + G ++A + F +++ L + +
Sbjct: 92 DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQAL 151
Query: 236 KCLNKED 242
D
Sbjct: 152 NAFGSGD 158
Score = 26.6 bits (59), Expect = 8.8
Identities = 5/36 (13%), Positives = 15/36 (41%)
Query: 176 QDTESLFRLANNYKENGLYEKALEKFTQLMTLLDEN 211
+ +L A Y +Y++A++ + + +
Sbjct: 327 DNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEND 362
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics,
PSI-2, protein structure initiative; 2.80A {Salinibacter
ruber} PDB: 2kcl_A 2kcv_A
Length = 100
Score = 31.1 bits (71), Expect = 0.084
Identities = 10/45 (22%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 172 LKNLQDTESLFRLANNYKENGLYEKALEKFTQLMTLLDENLVPPY 216
+++ +D + + LA + ++ +AL F +L+ D + V Y
Sbjct: 1 MEDPEDPFTRYALAQEHLKHDNASRALALFEELVE-TDPDYVGTY 44
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.7 bits (74), Expect = 0.12
Identities = 35/183 (19%), Positives = 59/183 (32%), Gaps = 74/183 (40%)
Query: 60 NIVR--------YFRGTMVYVNLCKNFKKGDQICENYGPLYSQVRKTERQNTLKSQYWFD 111
+IV +F G +KG +I ENY + F+
Sbjct: 1663 DIVINNPVNLTIHFGG-----------EKGKRIRENYSAMI-----------------FE 1694
Query: 112 CHCIACEHDWPLFEEM-QAAQDLRFRCETENCHNVVKVATNTTQ---FMIKCDKCDQFIN 167
+F+E+ + + FR E AT TQ +++
Sbjct: 1695 TIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLS-----ATQFTQPALTLME-------KA 1742
Query: 168 IFKGLKN--LQDTESLFRLANNYKENGL----YEKALEKFTQLMTLLDENLVPPYRDYIL 221
F+ LK+ L ++ F A G Y AL +M++ E+LV ++
Sbjct: 1743 AFEDLKSKGLIPADATF--A------GHSLGEY-AALASLADVMSI--ESLV-----EVV 1786
Query: 222 CQR 224
R
Sbjct: 1787 FYR 1789
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin
ligase; 2.60A {Schizosaccharomyces pombe}
Length = 597
Score = 32.5 bits (74), Expect = 0.12
Identities = 14/114 (12%), Positives = 35/114 (30%), Gaps = 10/114 (8%)
Query: 125 EEMQAAQDLRFRCETENCHNVVK-VATNTTQFMIKCDKCDQFINIFKGLKNLQD-TESLF 182
EE L + ++ ++ + D+ + + + L+ ++ L
Sbjct: 250 EEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLL 309
Query: 183 RLANNYKENGLYEKALEKFTQLMTLLDENLVPPYRDYILCQRSIQTCFLNLGQK 236
A+ + L T+++ +D PY + G+K
Sbjct: 310 CKADTLFVRSRFIDVLAITTKILE-ID-----PYNLDVYPLHL--ASLHESGEK 355
Score = 26.7 bits (59), Expect = 9.1
Identities = 6/42 (14%), Positives = 16/42 (38%)
Query: 166 INIFKGLKNLQDTESLFRLANNYKENGLYEKALEKFTQLMTL 207
+ + L + Y++ +Y+ A++ Q + L
Sbjct: 504 LVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL 545
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte
oxidase factor, SH3 domain, repeat, TPR repeat cell
cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1
PDB: 1wm5_A 1e96_B*
Length = 213
Score = 31.6 bits (72), Expect = 0.14
Identities = 6/31 (19%), Positives = 15/31 (48%)
Query: 174 NLQDTESLFRLANNYKENGLYEKALEKFTQL 204
+L + SL+ + ++ AL+ F+ +
Sbjct: 2 SLVEAISLWNEGVLAADKKDWKGALDAFSAV 32
Score = 27.4 bits (61), Expect = 3.3
Identities = 8/30 (26%), Positives = 14/30 (46%)
Query: 174 NLQDTESLFRLANNYKENGLYEKALEKFTQ 203
L E L+ +A Y + ++KA E+
Sbjct: 117 KLFACEVLYNIAFMYAKKEEWKKAEEQLAL 146
Score = 26.6 bits (59), Expect = 6.9
Identities = 7/35 (20%), Positives = 15/35 (42%)
Query: 182 FRLANNYKENGLYEKALEKFTQLMTLLDENLVPPY 216
F+ Y + Y+ A++ + + L N + Y
Sbjct: 75 FQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDY 109
Score = 26.2 bits (58), Expect = 9.7
Identities = 9/51 (17%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 166 INIFKGLKNLQDTESLFRLANNYKENGLYEKALEKFTQLMTLLDENLVPPY 216
++ F +++ + F + Y +A + FT+ + D++L Y
Sbjct: 26 LDAFSAVQD-PHSRICFNIGCMYTILKNMTEAEKAFTRSIN-RDKHLAVAY 74
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone,
endoplasmic reticulum, TPR repeat, UNF protein response;
2.51A {Mus musculus}
Length = 359
Score = 31.9 bits (73), Expect = 0.16
Identities = 17/79 (21%), Positives = 25/79 (31%), Gaps = 5/79 (6%)
Query: 158 KCDKCD-QFINIFKGLKNLQDTESLFRLANNYKENGLYEKALEKFTQLMTLLDENLVPPY 216
+C K D F K ++ L A +G Y A K+ +M E V Y
Sbjct: 213 ECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSVAEY 270
Query: 217 RDYILCQRSIQTCFLNLGQ 235
+ CF +
Sbjct: 271 TVRSKERICH--CFSKDEK 287
Score = 29.2 bits (66), Expect = 1.1
Identities = 7/27 (25%), Positives = 8/27 (29%)
Query: 177 DTESLFRLANNYKENGLYEKALEKFTQ 203
D E L G AL +F
Sbjct: 2 DVEKHLELGKKLLAAGQLADALSQFHA 28
Score = 26.9 bits (60), Expect = 6.3
Identities = 6/50 (12%), Positives = 19/50 (38%), Gaps = 5/50 (10%)
Query: 162 CDQFINIFKGLKNLQDTESLFRLANNYKENGLYEKALEKFTQLMTLLDEN 211
C + + + + +L A Y +Y++A++ + + +
Sbjct: 295 CSEVLQM-----EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEND 339
Score = 26.9 bits (60), Expect = 7.3
Identities = 6/28 (21%), Positives = 17/28 (60%)
Query: 176 QDTESLFRLANNYKENGLYEKALEKFTQ 203
+TE+ ++++ Y + G +E +L + +
Sbjct: 186 DNTEAFYKISTLYYQLGDHELSLSEVRE 213
>3ep0_A PR domain zinc finger protein 12; PR domain-containing protein 12,
structural genomics, structural genomics consortium,
SGC, DNA-binding; 2.10A {Homo sapiens}
Length = 170
Score = 31.2 bits (70), Expect = 0.16
Identities = 6/46 (13%), Positives = 15/46 (32%), Gaps = 3/46 (6%)
Query: 52 MFNHSC---EPNIVRYFRGTMVYVNLCKNFKKGDQICENYGPLYSQ 94
+ E N+ GT ++ + ++ YG ++
Sbjct: 104 YIKCARNEQEQNLEVVQIGTSIFYKAIEMIPPDQELLVWYGNSHNT 149
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin,
type III secretion, protein binding; 1.85A {Pseudomonas
aeruginosa} PDB: 2xcc_A
Length = 142
Score = 30.9 bits (70), Expect = 0.16
Identities = 17/82 (20%), Positives = 25/82 (30%), Gaps = 15/82 (18%)
Query: 166 INIFKGLKNL--QDTESLFRLANNYKENGLYEKALEKFTQLMTLLDENLVPPYRDYILCQ 223
IF+ L L D L + GLYE+AL+ ++ + P+
Sbjct: 38 QKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFH------ 91
Query: 224 RSIQTCFLNLGQ-----KCLNK 240
C L LG
Sbjct: 92 --AAECHLQLGDLDGAESGFYS 111
Score = 30.9 bits (70), Expect = 0.17
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 176 QDTESLFRLANNYKENGLYEKALEKFTQLMTL 207
E L+ L N + G ++ A + F L L
Sbjct: 16 DTLEQLYALGFNQYQAGKWDDAQKIFQALCML 47
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 31.3 bits (70), Expect = 0.19
Identities = 13/120 (10%), Positives = 37/120 (30%), Gaps = 9/120 (7%)
Query: 19 CLQFNCHEVADLVGTGESSKTRFIGAGIFPTLSMFNHSCEPNIVRYFRGTMVYVNLCKNF 78
+ N ++ D +++ R++ E N++ + +Y C++
Sbjct: 121 VDKNNRYKSIDGSDETKANWMRYVVIS--------REEREQNLLAFQHSERIYFRACRDI 172
Query: 79 KKGDQICENYGPLYSQVRKTERQNTLKSQYWFDCHCIACEHDWPLFE-EMQAAQDLRFRC 137
+ G+ + Y Y + + Q T+ + E + + +
Sbjct: 173 RPGEWLRVWYSEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGPIHLSV 232
>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET
domain, protein lysine methyltransferase, enzyme-
peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo
sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A*
3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A*
4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A*
Length = 261
Score = 31.2 bits (70), Expect = 0.26
Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 5/51 (9%)
Query: 54 NHSCEPN-----IVRYFRGTMVYVNLCKNFKKGDQICENYGPLYSQVRKTE 99
NHS PN V G + + + + +++ YG +S K+
Sbjct: 191 NHSFTPNCIYDMFVHPRFGPIKCIRTLRAVEADEELTVAYGYDHSPPGKSG 241
>3ihx_A PR domain zinc finger protein 10; PRDM10, methyltransferase,
structural genomics, structural G consortium, SGC,
DNA-binding, metal-binding, nucleus; 2.50A {Homo
sapiens}
Length = 152
Score = 30.4 bits (68), Expect = 0.33
Identities = 11/50 (22%), Positives = 19/50 (38%), Gaps = 3/50 (6%)
Query: 48 PTLSMFNHSC---EPNIVRYFRGTMVYVNLCKNFKKGDQICENYGPLYSQ 94
+ + E N+V Y G VY KN + ++ Y Y++
Sbjct: 95 NWMMFVRPAQNHLEQNLVAYQYGHHVYYTTIKNVEPKQELKVWYAASYAE 144
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide
repeat, type III secretion; HET: MLY; 1.95A {Yersinia
enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Length = 148
Score = 29.9 bits (67), Expect = 0.39
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 176 QDTESLFRLANNYKENGLYEKALEKFTQLMTL 207
E L+ LA N ++G YE A F L L
Sbjct: 19 DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL 50
Score = 26.8 bits (59), Expect = 4.5
Identities = 9/65 (13%), Positives = 18/65 (27%), Gaps = 3/65 (4%)
Query: 176 QDTESLFRLANNYKENGLYEKALEKFTQLMTLLDENLVPPYRDYILCQRSIQTCFLNLGQ 235
D+ L + G Y+ A+ ++ ++D C L +
Sbjct: 53 YDSRFFLGLGACRQAMGQYDLAIHSYSY-GAVMDIXEPRFPFHAAECLLQXGE--LAEAE 109
Query: 236 KCLNK 240
L
Sbjct: 110 SGLFL 114
>3q15_A PSP28, response regulator aspartate phosphatase H;
tetratricopeptide repeat, 3-helix bundle, phosphorelay
signa transduction, phosphatase; 2.19A {Bacillus
subtilis}
Length = 378
Score = 30.9 bits (70), Expect = 0.39
Identities = 5/45 (11%), Positives = 15/45 (33%), Gaps = 1/45 (2%)
Query: 160 DKCDQFINIFKGLKNLQDT-ESLFRLANNYKENGLYEKALEKFTQ 203
K ++ F+ A ++ + +E+A + +
Sbjct: 317 RKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRK 361
Score = 30.2 bits (68), Expect = 0.69
Identities = 7/78 (8%), Positives = 22/78 (28%), Gaps = 9/78 (11%)
Query: 166 INIFKGLKNLQDT-ESLFRLANNYKENGLYEKALEKFTQLMTLLDENLVPPYRDYILCQR 224
+ + + E F++A Y ++ Q + + Y+++ L
Sbjct: 128 EKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDI--------YQNHPLYSI 179
Query: 225 SIQTCFLNLGQKCLNKED 242
+ + +
Sbjct: 180 RTIQSLFVIAGNYDDFKH 197
Score = 29.8 bits (67), Expect = 0.92
Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 11/73 (15%)
Query: 164 QFINIFKGLK--NLQDTESLFRLANNYKENGLYEKALEKFTQLMTLLDENLVPPYRDYIL 221
Q ++I++ +++ +SLF +A NY + Y+KAL + L + I
Sbjct: 166 QALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMD---------IQ 216
Query: 222 CQRSIQTCFLNLG 234
R I LN+
Sbjct: 217 NDRFIAISLLNIA 229
Score = 27.1 bits (60), Expect = 5.8
Identities = 10/41 (24%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 164 QFINIFKGLKNLQDT-ESLFRLANNYKENGLYEKALEKFTQ 203
+ + ++N + SL +AN+Y +G + A+E F +
Sbjct: 207 AALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQK 247
Score = 26.7 bits (59), Expect = 8.3
Identities = 9/48 (18%), Positives = 15/48 (31%)
Query: 163 DQFINIFKGLKNLQDTESLFRLANNYKENGLYEKALEKFTQLMTLLDE 210
+ K L L SLF + Y +A+ + + L
Sbjct: 86 ETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPF 133
Score = 26.3 bits (58), Expect = 9.3
Identities = 7/51 (13%), Positives = 17/51 (33%)
Query: 166 INIFKGLKNLQDTESLFRLANNYKENGLYEKALEKFTQLMTLLDENLVPPY 216
+ + + LF L+ + G +KA + + + + Y
Sbjct: 249 AKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFY 299
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens}
SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Length = 336
Score = 30.6 bits (69), Expect = 0.42
Identities = 14/71 (19%), Positives = 27/71 (38%), Gaps = 8/71 (11%)
Query: 177 DTESLFRLANNYKENGL-------YEKALEKFTQLMTLLDENLVPPYRDYILCQRSIQTC 229
++E + KE G Y++AL ++ ++++ L+ + Q
Sbjct: 139 NSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLAS 198
Query: 230 FLNLGQKCLNK 240
LNL C K
Sbjct: 199 HLNLAM-CHLK 208
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing
protein, structur genomics, joint center for structural
genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Length = 208
Score = 30.1 bits (68), Expect = 0.47
Identities = 7/32 (21%), Positives = 14/32 (43%)
Query: 176 QDTESLFRLANNYKENGLYEKALEKFTQLMTL 207
Q + + + + E G +A+ F Q + L
Sbjct: 2 QSVDEMLQKVSAAIEAGQNGQAVSYFRQTIAL 33
Score = 26.6 bits (59), Expect = 6.3
Identities = 5/28 (17%), Positives = 10/28 (35%)
Query: 176 QDTESLFRLANNYKENGLYEKALEKFTQ 203
+ + L A G + AL + +
Sbjct: 86 NNVDCLEACAEMQVCRGQEKDALRMYEK 113
Score = 26.6 bits (59), Expect = 6.8
Identities = 5/34 (14%), Positives = 12/34 (35%)
Query: 174 NLQDTESLFRLANNYKENGLYEKALEKFTQLMTL 207
+ + +R + YEKA +++
Sbjct: 153 PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR 186
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus
thuringiensis serovar ISRAELE35646}
Length = 293
Score = 30.1 bits (67), Expect = 0.51
Identities = 21/194 (10%), Positives = 58/194 (29%), Gaps = 15/194 (7%)
Query: 52 MFNHSCEPNIVRYFRGTMVYVNLCKNFKKGDQICENYGPLYSQVRKTERQNTLKSQYWFD 111
+ + F+ ++ + K +K+ N + + Q+ +
Sbjct: 65 EVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKE----EYHPEFQQFLQWQYY 120
Query: 112 CHCIACEHDWPLFEEMQAAQDLRFRCETENCHNVVKVATNTTQFMIKCDKCDQFINIF-- 169
+ + ++ + L + + + + + + + I++F
Sbjct: 121 VAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQ 180
Query: 170 --KGLKNLQDTES-----LFRLANNYKENGLYEKALEKFTQLMTLLDENLVPPYRDYILC 222
K L+ L D E + A + YE++L + + + + +
Sbjct: 181 ILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240
Query: 223 QRSIQTCFLNLGQK 236
QR C L +
Sbjct: 241 QRGE--CLRKLEYE 252
>3k9i_A BH0479 protein; putative protein binding protein, structural
genomics, joint for structural genomics, JCSG; 2.71A
{Bacillus halodurans}
Length = 117
Score = 29.3 bits (66), Expect = 0.54
Identities = 12/65 (18%), Positives = 21/65 (32%), Gaps = 8/65 (12%)
Query: 171 GLKNLQDTESLFRLANNYKENGLYEKALEKFTQLMTLLDENLVPPYRDYILCQRSIQTCF 230
GL+ E L + ++ G Y KA + P + ++
Sbjct: 20 GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ------FPNHQALRVFYAM--VL 71
Query: 231 LNLGQ 235
NLG+
Sbjct: 72 YNLGR 76
Score = 26.6 bits (59), Expect = 4.6
Identities = 7/52 (13%), Positives = 18/52 (34%), Gaps = 5/52 (9%)
Query: 176 QDTESLFRLANNYKENGLYEKALEKFTQLMTLLDENLVPPYRDYILCQRSIQ 227
A G YE+ +E +++ ++ + Y +++I
Sbjct: 59 NHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDD--ETIQSY---KQAIL 105
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein
structure initiative, northeast structural genomics
consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Length = 272
Score = 29.9 bits (68), Expect = 0.57
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 179 ESLFRLANNYKENGLYEKALEKFTQL 204
+ FR A+ +N Y +A+E F +L
Sbjct: 4 DVEFRYADFLFKNNNYAEAIEVFNKL 29
Score = 27.2 bits (61), Expect = 4.1
Identities = 8/28 (28%), Positives = 11/28 (39%)
Query: 176 QDTESLFRLANNYKENGLYEKALEKFTQ 203
D + + L Y N Y KA F +
Sbjct: 140 TDPKVFYELGQAYYYNKEYVKADSSFVK 167
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein
structure initiative, PSI, center for eukaryotic
structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Length = 307
Score = 29.9 bits (67), Expect = 0.70
Identities = 9/51 (17%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Query: 154 QFMIKCDKCDQFINIFKGLKNLQDTESLF-RLANNYKENGLYEKALEKFTQ 203
+ + K +K + + K + S + + A +K E+A + + Q
Sbjct: 12 EHIAKAEKYLK-TSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQ 61
Score = 29.5 bits (66), Expect = 0.92
Identities = 6/66 (9%), Positives = 18/66 (27%), Gaps = 9/66 (13%)
Query: 178 TESLFRLANNYKENGLYEKALEKFTQLMTLLDENLVPPYRDYILCQRSIQTCFLNLGQKC 237
E + + + +++A + ++ E P +
Sbjct: 155 AELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPT---------CYKKCIAQVLVQ 205
Query: 238 LNKEDM 243
L++ D
Sbjct: 206 LHRADY 211
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha
helix, antivirus, antiviral protein; 2.80A {Homo
sapiens}
Length = 472
Score = 29.9 bits (67), Expect = 0.78
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 173 KNLQDTESLFRLANNYKENGLYEKALE 199
KN D+E+L LA + N ++A E
Sbjct: 425 KNGADSEALHVLAFLQELNEKMQQADE 451
Score = 26.8 bits (59), Expect = 6.8
Identities = 12/70 (17%), Positives = 22/70 (31%), Gaps = 9/70 (12%)
Query: 173 KNLQDTESLFRLANNYKENGLYEKALEKFTQLMTLLDENLVPPYRDYILCQRSIQTCFLN 232
N LA+ + YE+A F + + L P + + + + N
Sbjct: 329 ANDNLFRVCSILASLHALADQYEEAEYYFQK---EFSKELTPVAKQLLHLR------YGN 379
Query: 233 LGQKCLNKED 242
+ ED
Sbjct: 380 FQLYQMKCED 389
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A
{Rhodothermus marinus}
Length = 261
Score = 29.7 bits (67), Expect = 0.81
Identities = 9/50 (18%), Positives = 19/50 (38%), Gaps = 7/50 (14%)
Query: 170 KGLKNLQDTESLFRLANNYKENGLYEKALEKFTQLMTLLDENLVPPYRDY 219
L++ + F A + G Y++A+E F + T ++
Sbjct: 8 GRLRH-SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG------RTHEW 50
>3dal_A PR domain zinc finger protein 1; methyltransferase, PRDM1,
structural genomics, structural genomics consortium,
SGC, DNA-binding, metal-binding; 1.65A {Homo sapiens}
Length = 196
Score = 29.3 bits (65), Expect = 0.82
Identities = 6/41 (14%), Positives = 14/41 (34%)
Query: 54 NHSCEPNIVRYFRGTMVYVNLCKNFKKGDQICENYGPLYSQ 94
+ E N+ G +Y K ++ Y +++
Sbjct: 139 HSPREQNLAACQNGMNIYFYTIKPIPANQELLVWYCRDFAE 179
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle
orientation, asymmetric CEL divisions; 2.10A {Drosophila
melanogaster}
Length = 411
Score = 29.2 bits (66), Expect = 1.3
Identities = 9/73 (12%), Positives = 15/73 (20%), Gaps = 12/73 (16%)
Query: 163 DQFINIFKGLKNLQDT-ESLFRLANNYKENGLYEKALEKFTQLMTLLDENLVPPYRDYIL 221
D G L G + F + E+
Sbjct: 32 DGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTED---------- 81
Query: 222 CQRSIQTCFLNLG 234
R++ + LG
Sbjct: 82 -LRTLSAIYSQLG 93
Score = 28.0 bits (63), Expect = 2.7
Identities = 7/39 (17%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 166 INIFKGLKNLQDT-ESLFRLANNYKENGLYEKALEKFTQ 203
+ + K + + +S L N K G +++A +
Sbjct: 113 LTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCER 151
Score = 28.0 bits (63), Expect = 3.4
Identities = 9/41 (21%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 164 QFINIFKGLKNLQDT-ESLFRLANNYKENGLYEKALEKFTQ 203
+ + I + L + + + L N + G +E+AL+ Q
Sbjct: 328 RHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQ 368
Score = 26.9 bits (60), Expect = 6.2
Identities = 7/41 (17%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 164 QFINIFKGLKNLQDT-ESLFRLANNYKENGLYEKALEKFTQ 203
+ + + L + +S + L N Y + A+E +
Sbjct: 288 RTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNR 328
Score = 26.5 bits (59), Expect = 8.2
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 179 ESLFRLANNYKENGLYEKALEKFTQ 203
+L N Y G Y KA++
Sbjct: 87 AIYSQLGNAYFYLGDYNKAMQYHKH 111
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide
repeat, response regulator helix-turn-HELX binding,
3-helix bundle; 2.30A {Bacillus subtilis}
Length = 383
Score = 29.0 bits (65), Expect = 1.4
Identities = 10/71 (14%), Positives = 23/71 (32%), Gaps = 11/71 (15%)
Query: 166 INIFKGLKNLQDT--ESLFRLANNYKENGLYEKALEKFTQLMTLLDENLVPPYRDYILCQ 223
I+K + + A N+ + YE A+ F + ++ +
Sbjct: 170 YEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEA---------EKQP 220
Query: 224 RSIQTCFLNLG 234
+ + N+G
Sbjct: 221 QLMGRTLYNIG 231
Score = 28.6 bits (64), Expect = 1.8
Identities = 8/45 (17%), Positives = 16/45 (35%), Gaps = 1/45 (2%)
Query: 160 DKCDQFINIFKGLKNLQDT-ESLFRLANNYKENGLYEKALEKFTQ 203
+ F + + D + +A Y E ++KA F +
Sbjct: 320 EAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLK 364
Score = 28.2 bits (63), Expect = 2.7
Identities = 8/78 (10%), Positives = 26/78 (33%), Gaps = 9/78 (11%)
Query: 166 INIFKGLKNLQDT-ESLFRLANNYKENGLYEKALEKFTQLMTLLDENLVPPYRDYILCQR 224
+ +K+ + E F+++ +Y +++ Q + Y+++
Sbjct: 130 ESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEI--------YKEHEAYNI 181
Query: 225 SIQTCFLNLGQKCLNKED 242
+ C L+ +
Sbjct: 182 RLLQCHSLFATNFLDLKQ 199
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein
transport; 3.00A {Saccharomyces cerevisiae}
Length = 514
Score = 28.9 bits (65), Expect = 1.4
Identities = 5/25 (20%), Positives = 11/25 (44%)
Query: 179 ESLFRLANNYKENGLYEKALEKFTQ 203
+L N + N Y+ A++ +
Sbjct: 7 LALKDKGNQFFRNKKYDDAIKYYNW 31
Score = 27.4 bits (61), Expect = 5.6
Identities = 8/36 (22%), Positives = 15/36 (41%)
Query: 176 QDTESLFRLANNYKENGLYEKALEKFTQLMTLLDEN 211
++ L R A+ + G + A+ + L D N
Sbjct: 71 DYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFN 106
>2kat_A Uncharacterized protein; NESG, structure, structural genomics,
PSI-2, protein structure initiative; NMR {Bordetella
parapertussis}
Length = 115
Score = 27.7 bits (62), Expect = 1.5
Identities = 6/31 (19%), Positives = 11/31 (35%)
Query: 177 DTESLFRLANNYKENGLYEKALEKFTQLMTL 207
+ F L Y E+ ++ AL +
Sbjct: 18 NMLLRFTLGKTYAEHEQFDAALPHLRAALDF 48
>2a3m_A COG3005: nitrate/TMAO reductases, membrane-bound cytochrome C
subunit; tetraheme cytochrome, electron transport; HET:
HEM; 1.50A {Desulfovibrio desulfuricans subsp} PDB:
2a3p_A*
Length = 130
Score = 28.0 bits (61), Expect = 1.5
Identities = 10/45 (22%), Positives = 13/45 (28%), Gaps = 7/45 (15%)
Query: 114 CIACEHDWPLFEEMQAAQDLRFRCETENCHNVVKVATNTTQFMIK 158
C C H E + C T CH+V + K
Sbjct: 52 CADCHHPVDGKENLAK-------CATAGCHDVFDKKDKSVHSYYK 89
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C,
TPR-containing domain, structural genomics; 1.63A
{Plasmodium falciparum} SCOP: a.118.8.1
Length = 198
Score = 28.6 bits (64), Expect = 1.6
Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 9/72 (12%)
Query: 177 DTESLFRLANNYKE-------NGLYEKALEKFTQLMTLLDENLVPPYRDYILCQRSIQ-T 228
E + A + KE +A+ K+ + + + + +++I+ +
Sbjct: 30 TDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEIS 89
Query: 229 CFLNLGQKCLNK 240
C LNL C NK
Sbjct: 90 CNLNLAT-CYNK 100
>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati
regulator, DNA damage, DNA repair, DNA-binding, nucleus,
ST genomics; HET: SAH; 1.59A {Homo sapiens}
Length = 290
Score = 28.7 bits (64), Expect = 1.6
Identities = 14/86 (16%), Positives = 29/86 (33%), Gaps = 25/86 (29%)
Query: 39 TRFIGAGIFPTLSMFNHSCEPNIVRYFRGTMVYVNL---------CKNFKKGDQICENYG 89
RF+ NHSCEPN++ V ++ K+ +++ +Y
Sbjct: 206 GRFL-----------NHSCEPNLLMIP----VRIDSMVPKLALFAAKDIVPEEELSYDYS 250
Query: 90 P-LYSQVRKTERQNTLKSQYWFDCHC 114
+ ++ + C+C
Sbjct: 251 GRYLNLTVSASKERLDHGKLRKPCYC 276
>1up9_A Cytochrome C3; electron transport; HET: HEC; 1.35A {Desulfovibrio
desulfuricans} SCOP: a.138.1.1 PDB: 1gm4_A* 1gmb_A*
1upd_A* 2kmy_A* 2ksu_A* 3cyr_A* 1i77_A*
Length = 107
Score = 27.6 bits (60), Expect = 1.6
Identities = 7/43 (16%), Positives = 11/43 (25%), Gaps = 7/43 (16%)
Query: 114 CIACEHDWPLFEEMQAAQDLRFRCETENCHNVVKVATNTTQFM 156
C+ C H E C + CH+ +
Sbjct: 30 CVTCHHLVDGKESYAK-------CGSSGCHDDLTAKKGEKSLY 65
>3db5_A PR domain zinc finger protein 4; methyltransferase, PRDM4,
structural genomics, structural GE consortium, SGC,
DNA-binding, metal-binding, nucleus; 2.15A {Homo
sapiens}
Length = 151
Score = 28.0 bits (62), Expect = 1.7
Identities = 7/41 (17%), Positives = 17/41 (41%)
Query: 54 NHSCEPNIVRYFRGTMVYVNLCKNFKKGDQICENYGPLYSQ 94
+ E N+V Y ++ ++ +++ Y Y+Q
Sbjct: 105 RNREEQNLVAYPHDGKIFFCTSQDIPPENELLFYYSRDYAQ 145
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein
structure initiative, midwest center for structural
genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} SCOP:
c.66.1.47 PDB: 3k6r_A 3a25_A* 3a26_A*
Length = 278
Score = 28.4 bits (63), Expect = 1.8
Identities = 9/49 (18%), Positives = 15/49 (30%), Gaps = 3/49 (6%)
Query: 104 LKSQYWFDCHCIACEHDWP--LFEEMQ-AAQDLRFRCETENCHNVVKVA 149
K H E P FE + ++ + E N + + A
Sbjct: 215 AKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGYDVEKLNELKIKRYA 263
>2qpw_A PR domain zinc finger protein 2; methyltransferase, activator,
alternative initiation, alternative splicing,
DNA-binding, metal-binding, nucleus; 1.79A {Homo
sapiens} PDB: 2jv0_A*
Length = 149
Score = 28.1 bits (62), Expect = 1.9
Identities = 9/48 (18%), Positives = 16/48 (33%), Gaps = 3/48 (6%)
Query: 50 LSMFNHSC---EPNIVRYFRGTMVYVNLCKNFKKGDQICENYGPLYSQ 94
L N +C E N+ +Y K G+++ Y +
Sbjct: 100 LRYVNWACSGEEQNLFPLEINRAIYYKTLKPIAPGEELLVWYNGEDNP 147
>1czj_A Cytochrome C3; octaheme cytochrome, electron transport; HET: HEM;
2.16A {Desulfomicrobium norvegicum} SCOP: a.138.1.1 PDB:
1aqe_A*
Length = 111
Score = 27.6 bits (60), Expect = 2.0
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 7/43 (16%)
Query: 114 CIACEHDWPLFEEMQAAQDLRFRCETENCHNVVKVATNTTQFM 156
C C H P +++ C TE CH+ +K T +
Sbjct: 38 CQQCHHTVPDTYTIES-------CMTEGCHDNIKERTEISSVY 73
>1j0p_A Cytochrome C3; high resolution Y43L mutant, electron transport;
HET: HEM; 0.91A {Desulfovibrio vulgaris} SCOP: a.138.1.1
PDB: 1it1_A* 1j0o_A* 2ffn_A* 1wr5_A* 2ewi_A* 2cdv_A*
2ewk_A* 2yyw_A* 2yxc_A* 2z47_A* 2yyx_A* 2ewu_A* 1a2i_A*
1gx7_E* 2bpn_A* 2cth_A* 2cym_A* 1mdv_A*
Length = 108
Score = 27.2 bits (59), Expect = 2.5
Identities = 9/34 (26%), Positives = 13/34 (38%), Gaps = 7/34 (20%)
Query: 114 CIACEHDWPLFEEMQAAQDLRFRCETENCHNVVK 147
C C H E++Q C T CH+ +
Sbjct: 31 CGDCHHPVNGKEDLQK-------CATAGCHDNMD 57
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, no structural genomics consortium,
NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Length = 203
Score = 27.6 bits (62), Expect = 2.9
Identities = 4/39 (10%), Positives = 13/39 (33%), Gaps = 1/39 (2%)
Query: 166 INIFKGLKNLQDT-ESLFRLANNYKENGLYEKALEKFTQ 203
+ + +L ++ + G ++ A F +
Sbjct: 53 QQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLE 91
Score = 26.9 bits (60), Expect = 6.2
Identities = 6/41 (14%), Positives = 11/41 (26%), Gaps = 1/41 (2%)
Query: 164 QFINIFKGLKNLQDT-ESLFRLANNYKENGLYEKALEKFTQ 203
L + + F L Y +++A F
Sbjct: 11 AERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQA 51
>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4,
SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP:
b.85.7.1 PDB: 1mvx_A
Length = 299
Score = 27.9 bits (62), Expect = 2.9
Identities = 17/86 (19%), Positives = 27/86 (31%), Gaps = 21/86 (24%)
Query: 39 TRFIGAGIFPTLSMFNHSCEPNI----VRYFRGTMVYVNLC----KNFKKGDQICENYGP 90
+RF NHSC PNI G +L K+ + +++ +Y
Sbjct: 214 SRFF-----------NHSCSPNIAIYSAVRNHGFRTIYDLAFFAIKDIQPLEELTFDYAG 262
Query: 91 LYSQVRK--TERQNTLKSQYWFDCHC 114
+ Q S+ C C
Sbjct: 263 AKDFSPVQSQKSQQNRISKLRRQCKC 288
>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9
methyltransferase 2, H3 lysine-9 specific 2, alternative
splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens}
Length = 300
Score = 28.0 bits (62), Expect = 3.2
Identities = 14/86 (16%), Positives = 28/86 (32%), Gaps = 21/86 (24%)
Query: 39 TRFIGAGIFPTLSMFNHSCEPNI----VRYFRGTMVYVNLC----KNFKKGDQICENYGP 90
+ F+ NHSC+PN+ V + + G+++ +Y
Sbjct: 216 SHFV-----------NHSCDPNLQVFNVFIDNLDTRLPRIALFSTRTINAGEELTFDYQM 264
Query: 91 LYSQVRKTERQ--NTLKSQYWFDCHC 114
S ++ + K + C C
Sbjct: 265 KGSGDISSDSIDHSPAKKRVRTVCKC 290
>3ihv_A SUSD homolog; NP_813570.1, structural genomics, joint center
structural genomics, JCSG, protein structure initiative;
HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Length = 535
Score = 27.9 bits (62), Expect = 3.6
Identities = 8/62 (12%), Positives = 15/62 (24%), Gaps = 11/62 (17%)
Query: 181 LFRLANNYKENGLYEKALEKFTQLMTLLDENLVPPYRDYILCQRSIQTCFLNLGQKCLN- 239
K+ +E A + L+ L+ Y + N +
Sbjct: 207 ATWAGYPVKDESKWEAAAKTARILVESGKHGLLKDYEQL----------WKNTCNGTWDP 256
Query: 240 KE 241
E
Sbjct: 257 TE 258
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat,
protein-protein interaction, protein-binding, PR
binding; 2.30A {Mus musculus}
Length = 338
Score = 27.6 bits (62), Expect = 3.6
Identities = 7/56 (12%), Positives = 17/56 (30%), Gaps = 11/56 (19%)
Query: 179 ESLFRLANNYKENGLYEKALEKFTQLMTLLDENLVPPYRDYILCQRSIQTCFLNLG 234
L ++G + F + + E+L +++ + LG
Sbjct: 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDL-----------KTLSAIYSQLG 50
Score = 27.2 bits (61), Expect = 5.5
Identities = 10/41 (24%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 164 QFINIFKGLKNLQDT-ESLFRLANNYKENGLYEKALEKFTQ 203
+ + + + LK+ +S + L N Y YEKA++ +
Sbjct: 248 KTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLK 288
Score = 27.2 bits (61), Expect = 5.6
Identities = 6/37 (16%), Positives = 12/37 (32%), Gaps = 1/37 (2%)
Query: 168 IFKGLKNLQDT-ESLFRLANNYKENGLYEKALEKFTQ 203
+ L + + L N + G + A+ Q
Sbjct: 172 LVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQ 208
Score = 27.2 bits (61), Expect = 5.7
Identities = 5/39 (12%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 166 INIFKGLKNLQDT-ESLFRLANNYKENGLYEKALEKFTQ 203
+ + + + + ++ L N K G +++A+ +
Sbjct: 70 LTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQR 108
Score = 26.4 bits (59), Expect = 9.8
Identities = 8/24 (33%), Positives = 9/24 (37%)
Query: 180 SLFRLANNYKENGLYEKALEKFTQ 203
+L N Y Y KALE
Sbjct: 45 IYSQLGNAYFYLHDYAKALEYHHH 68
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria
translocation, allosteric REG phosphoprotein, TPR
repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae}
PDB: 3fp3_A 3fp4_A 3lca_A
Length = 537
Score = 27.8 bits (62), Expect = 3.8
Identities = 3/25 (12%), Positives = 10/25 (40%)
Query: 179 ESLFRLANNYKENGLYEKALEKFTQ 203
L N++ + +A++ +
Sbjct: 26 VQLKNRGNHFFTAKNFNEAIKYYQY 50
Score = 27.0 bits (60), Expect = 7.0
Identities = 4/27 (14%), Positives = 9/27 (33%)
Query: 177 DTESLFRLANNYKENGLYEKALEKFTQ 203
S LA + ++ + F +
Sbjct: 275 TPNSYIFLALTLADKENSQEFFKFFQK 301
Score = 26.6 bits (59), Expect = 8.9
Identities = 7/34 (20%), Positives = 15/34 (44%)
Query: 176 QDTESLFRLANNYKENGLYEKALEKFTQLMTLLD 209
+++L R A+ + G + A+ + L D
Sbjct: 91 DHSKALLRRASANESLGNFTDAMFDLSVLSLNGD 124
>2bq4_A Cytochrome C3, basic cytochrome C3; electron transfer, sulfate
reducing bacteria, SAD, heme, iron, electron transport;
HET: HEC; 1.68A {Desulfovibrio africanus}
Length = 116
Score = 26.5 bits (57), Expect = 4.3
Identities = 10/35 (28%), Positives = 11/35 (31%), Gaps = 7/35 (20%)
Query: 114 CIACEHDWPLFEEMQAAQDLRFRCETENCHNVVKV 148
C C H W E+ C TE CH
Sbjct: 40 CQKCHHKWDGKSEIGG-------CATEGCHADTTS 67
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein
structure initiative, midwest center for structural
genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP:
e.59.1.1
Length = 309
Score = 27.5 bits (60), Expect = 4.8
Identities = 11/89 (12%), Positives = 29/89 (32%), Gaps = 23/89 (25%)
Query: 90 PLYSQVRKTERQNTLKSQYWFDCHCIACEHDWPLFEEMQAAQDLRFRC------ETENCH 143
P+ +R+ ++ L+ C C +W +R +C +
Sbjct: 192 PMAGMIRQGGKETGLRY-----LSCSLCACEWHY---------VRIKCSHCEESKHLAYL 237
Query: 144 NVVKVATNTTQFMIK---CDKCDQFINIF 169
++ + +++ C C ++ F
Sbjct: 238 SLEHDGQPAEKAVLRAETCPSCQGYLKQF 266
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR,
cell polarity, asymmetric CEL division, mitotic spindle
orientation; 2.60A {Homo sapiens}
Length = 406
Score = 27.3 bits (61), Expect = 4.8
Identities = 5/39 (12%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 166 INIFKGLKNLQDT-ESLFRLANNYKENGLYEKALEKFTQ 203
+ + + + + ++ L N K G +++A+ +
Sbjct: 74 LTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQR 112
Score = 26.9 bits (60), Expect = 6.9
Identities = 7/56 (12%), Positives = 17/56 (30%), Gaps = 11/56 (19%)
Query: 179 ESLFRLANNYKENGLYEKALEKFTQLMTLLDENLVPPYRDYILCQRSIQTCFLNLG 234
L ++G + F + + E+L +++ + LG
Sbjct: 10 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDL-----------KTLSAIYSQLG 54
Score = 26.9 bits (60), Expect = 8.1
Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 168 IFKGLKNLQDT-ESLFRLANNYKENGLYEKALEKFTQ 203
+ + LK+ +S + L N Y YEKA++ +
Sbjct: 256 LARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLK 292
Score = 26.5 bits (59), Expect = 8.6
Identities = 7/41 (17%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 164 QFINIFKGLKNLQDT-ESLFRLANNYKENGLYEKALEKFTQ 203
+ + I + L + + + L N Y G +++A+ +
Sbjct: 292 KHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 332
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown
function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Length = 275
Score = 27.3 bits (61), Expect = 5.0
Identities = 8/44 (18%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Query: 160 DKCDQFINIFKGLKNLQDTESLFRLANNYKENGLYEKALEKFTQ 203
+ +Q + + + + L+ Y GL A F+Q
Sbjct: 26 ARMEQILASRALTDD-ERAQLLYERGVLYDSLGLRALARNDFSQ 68
>3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent
deacetylase, sirtuin, substrate peptide comple
hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens}
PDB: 3gls_A 3glt_A* 3glu_A
Length = 285
Score = 27.0 bits (60), Expect = 5.6
Identities = 13/69 (18%), Positives = 22/69 (31%), Gaps = 14/69 (20%)
Query: 109 WFDCHCIACEHDWPLFEEMQAA--QDLRFRCETENCHNVVKVAT---------NTTQFMI 157
+ C C+ +P E+++A D RC C VVK ++
Sbjct: 137 FASATCTVCQRPFPG-EDIRADVMADRVPRC--PVCTGVVKPDIVFFGEPLPQRFLLHVV 193
Query: 158 KCDKCDQFI 166
D +
Sbjct: 194 DFPMADLLL 202
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat,
cysteine rich protein, loop-helix-TU repeat protein,
hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Length = 273
Score = 27.2 bits (61), Expect = 5.7
Identities = 6/28 (21%), Positives = 12/28 (42%)
Query: 176 QDTESLFRLANNYKENGLYEKALEKFTQ 203
QD + L L + + +A + F +
Sbjct: 4 QDPKELVGLGAKSYKEKDFTQAKKYFEK 31
>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent
methyltransferase histone H3 lysine- 9 methylation;
1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A*
Length = 302
Score = 26.9 bits (59), Expect = 5.9
Identities = 14/70 (20%), Positives = 25/70 (35%), Gaps = 9/70 (12%)
Query: 53 FNHSCEPNI----VRYFRGTMVYVNLC----KNFKKGDQICENYGPLYSQVRKTERQNTL 104
NHSC+PN+ +L K+ KG ++ +Y + + +
Sbjct: 224 INHSCDPNMAIFARVGDHADKHIHDLALFAIKDIPKGTELTFDYVNGLTGLESDAHDPSK 283
Query: 105 KSQYWFDCHC 114
S+ C C
Sbjct: 284 ISEM-TKCLC 292
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell
division, protein binding; 1.10A {Mus musculus}
Length = 164
Score = 26.3 bits (59), Expect = 6.3
Identities = 10/41 (24%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 164 QFINIFKGLKNLQDT-ESLFRLANNYKENGLYEKALEKFTQ 203
+ + + + LK+ +S + L N Y YEKA++ +
Sbjct: 74 KTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLK 114
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein,
tetratricopeptide repeat protein, HOST-virus
interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Length = 131
Score = 26.0 bits (58), Expect = 7.0
Identities = 12/62 (19%), Positives = 22/62 (35%), Gaps = 8/62 (12%)
Query: 174 NLQDTESLFRLANNYKENGLYEKALEKFTQLMTLLDENLVPPYRDYILCQRSIQTCFLNL 233
+ + E L N + +E A+ + + + L N V C R+ + L
Sbjct: 8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAV------YFCNRAA--AYSKL 59
Query: 234 GQ 235
G
Sbjct: 60 GN 61
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like
repeat, protein transport; 2.90A {Saccharomyces
cerevisiae} SCOP: a.118.8.1
Length = 292
Score = 26.5 bits (58), Expect = 7.5
Identities = 14/70 (20%), Positives = 26/70 (37%), Gaps = 8/70 (11%)
Query: 178 TESLFRLANNYKENGLYEKALEKFTQLMTLLDENLVPPYRDYILCQRSIQTCFLNLGQKC 237
+ + A+ +G Y +A + +++L+ N L Q S++ FL G
Sbjct: 158 NKCFIKCADLKALDGQYIEASDIYSKLIKSSMGN--------RLSQWSLKDYFLKKGLCQ 209
Query: 238 LNKEDMNGTK 247
L D
Sbjct: 210 LAATDAVAAA 219
>1s5p_A NAD-dependent deacetylase; protein deacetylase, SIR2 homologue,
hydrolase; HET: ALY; 1.96A {Escherichia coli} SCOP:
c.31.1.5
Length = 235
Score = 26.4 bits (59), Expect = 7.9
Identities = 3/38 (7%), Positives = 9/38 (23%), Gaps = 4/38 (10%)
Query: 110 FDCHCIACEHDWPLFEEMQAAQDLRFRCETENCHNVVK 147
C ++ +D C+ ++
Sbjct: 112 LKVRCSQSGQVLDWTGDV-TPEDKCHCCQ---FPAPLR 145
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein
interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP:
a.118.8.1 PDB: 2bug_A
Length = 166
Score = 26.2 bits (58), Expect = 8.8
Identities = 11/70 (15%), Positives = 22/70 (31%), Gaps = 15/70 (21%)
Query: 173 KNLQDTESLFRLANNYKENG-------LYEKALEKFTQLMTLLDENLVPPYRDYILCQRS 225
++ + + A K YE A++ ++Q + L N + RS
Sbjct: 1 RDEPPADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAI------YYGNRS 54
Query: 226 IQTCFLNLGQ 235
+L
Sbjct: 55 --LAYLRTEC 62
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis,
TPR, superhelix, protein binding; HET: MSE; 2.00A
{Pseudomonas aeruginosa} PDB: 2fi7_A
Length = 252
Score = 26.5 bits (59), Expect = 8.9
Identities = 10/52 (19%), Positives = 19/52 (36%), Gaps = 15/52 (28%)
Query: 167 NIFKGLKNLQDTESLFRLA-----------NNY----KENGLYEKALEKFTQ 203
+F+ + + +R A NNY E YE+A ++ +
Sbjct: 79 VVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLE 130
>3jq0_A SUSD superfamily protein; structural genomic center for structural
genomics, JCSG, protein structure INI PSI-2, RAGB; HET:
MSE GOL SO4; 1.13A {Bacteroides vulgatus atcc 8482}
Length = 493
Score = 26.3 bits (58), Expect = 9.6
Identities = 6/38 (15%), Positives = 11/38 (28%)
Query: 181 LFRLANNYKENGLYEKALEKFTQLMTLLDENLVPPYRD 218
L+ N Y A F + + ++D
Sbjct: 194 LWSGRQMNGGNSDYTIAKNAFENVKKADVGLVTSSFKD 231
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.139 0.438
Gapped
Lambda K H
0.267 0.0585 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,642,299
Number of extensions: 198558
Number of successful extensions: 920
Number of sequences better than 10.0: 1
Number of HSP's gapped: 902
Number of HSP's successfully gapped: 173
Length of query: 247
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 156
Effective length of database: 4,160,982
Effective search space: 649113192
Effective search space used: 649113192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (25.7 bits)