RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5735
(247 letters)
>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27
Methyltransferase {Paramecium bursaria chlorella virus
1, PBCV-1 [TaxId: 10506]}
Length = 119
Score = 39.0 bits (90), Expect = 9e-05
Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 51 SMFNHSCEPNIVRYF--RGTMVYVNLCKNFKKGDQICENYGPLYSQVRKTERQN 102
++FNHS +PN + + K G++I +YG Y R QN
Sbjct: 66 AIFNHSKDPNARHELTAGLKRMRIFTIKPIAIGEEITISYGDDYWLSRPRLTQN 119
>d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden
pea (Pisum sativum) [TaxId: 3888]}
Length = 261
Score = 35.7 bits (81), Expect = 0.003
Identities = 10/65 (15%), Positives = 18/65 (27%), Gaps = 11/65 (16%)
Query: 40 RFIGAGIFPTLSMFNHSCEPNIVRYF-----------RGTMVYVNLCKNFKKGDQICENY 88
R + P + NHS + + + + K G+Q+ Y
Sbjct: 179 RNENLVVVPMADLINHSAGVTTEDHAYEVKGAAGLFSWDYLFSLKSPLSVKAGEQVYIQY 238
Query: 89 GPLYS 93
S
Sbjct: 239 DLNKS 243
>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2,
p67-phox) {Human (Homo sapiens) [TaxId: 9606]}
Length = 192
Score = 29.8 bits (66), Expect = 0.18
Identities = 6/30 (20%), Positives = 14/30 (46%)
Query: 175 LQDTESLFRLANNYKENGLYEKALEKFTQL 204
L + SL+ + ++ AL+ F+ +
Sbjct: 2 LVEAISLWNEGVLAADKKDWKGALDAFSAV 31
Score = 25.2 bits (54), Expect = 6.1
Identities = 17/127 (13%), Positives = 39/127 (30%), Gaps = 16/127 (12%)
Query: 83 QICENYGPLYSQVRKTERQNTLKSQYWFDCHCIACEHDWPLFEEMQAAQDLRFRCETENC 142
+IC N G +Y+ ++ I + + + +
Sbjct: 37 RICFNIGCMYTILKNMTEA------EKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDL-- 88
Query: 143 HNVVKVATNTTQFMIKCDKCDQFINIFKG--LKNLQDTESLFRLANNYKENGLYEKALEK 200
A + + + +Q I+ L E L+ +A Y + ++KA E+
Sbjct: 89 ------AIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQ 142
Query: 201 FTQLMTL 207
++
Sbjct: 143 LALATSM 149
>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium
tepidum [TaxId: 1097]}
Length = 156
Score = 28.9 bits (63), Expect = 0.32
Identities = 11/65 (16%), Positives = 17/65 (26%), Gaps = 3/65 (4%)
Query: 170 KGLKNLQDTESLFRLANNYKENGLYEKALEKFTQLMTLLDENLVPPYRDYILCQRSIQTC 229
K LK + A G Y++A + M + P + C
Sbjct: 1 KPLKEVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTM---PPEEAFDHAGFDAFC 57
Query: 230 FLNLG 234
L
Sbjct: 58 HAGLA 62
>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId:
562]}
Length = 259
Score = 29.4 bits (64), Expect = 0.38
Identities = 13/163 (7%), Positives = 28/163 (17%), Gaps = 1/163 (0%)
Query: 52 MFNHSCEPNIVRYFRGTMVYVNLCKNFKKGDQICENYGPLYSQVRKTERQNTLKSQYWFD 111
+ + + + G F
Sbjct: 82 TQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFR 141
Query: 112 CHCIACEHDWPLFEEMQAAQDLRFRCETENCHNVVKVATNTTQFMIKCDKCDQFINIFKG 171
+ ++ + F + V + +
Sbjct: 142 SLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDN 201
Query: 172 LK-NLQDTESLFRLANNYKENGLYEKALEKFTQLMTLLDENLV 213
+E+ F L Y G + A F + N V
Sbjct: 202 TSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 244
Score = 25.2 bits (53), Expect = 7.4
Identities = 8/34 (23%), Positives = 14/34 (41%)
Query: 172 LKNLQDTESLFRLANNYKENGLYEKALEKFTQLM 205
L + + + L+ Y GL A F+Q +
Sbjct: 31 LTDDERAQLLYERGVLYDSLGLRALARNDFSQAL 64
>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 290
Score = 29.2 bits (64), Expect = 0.46
Identities = 14/138 (10%), Positives = 33/138 (23%), Gaps = 8/138 (5%)
Query: 102 NTLKSQYWFDCHCIACEHDWPLFEEMQAAQDLR--FRCETENCHNVVKVATNTTQFMIKC 159
KS + E+ +F + E N +
Sbjct: 85 KCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELA 144
Query: 160 DKCDQFINIFKGLKNLQDTESLFRLANNYKENGLYEKALEKFTQLMTLLDENLVPPYRDY 219
+ + + A+ +G Y +A + +++L+ N + +
Sbjct: 145 GEWYAQDQ-----SVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK 199
Query: 220 ILCQRSIQTCFLNLGQKC 237
+ C L
Sbjct: 200 DYFLK-KGLCQLAATDAV 216
Score = 26.5 bits (57), Expect = 2.9
Identities = 4/37 (10%), Positives = 10/37 (27%)
Query: 179 ESLFRLANNYKENGLYEKALEKFTQLMTLLDENLVPP 215
+ + A Y+ A + F + +
Sbjct: 38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNED 74
>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific
methyltransferase SET7/9 catalytic domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 171
Score = 28.6 bits (63), Expect = 0.50
Identities = 11/69 (15%), Positives = 20/69 (28%), Gaps = 7/69 (10%)
Query: 51 SMFNHSCEPN-----IVRYFRGTMVYVNLCKNFKKGDQICENYGPLYSQVRKTERQNTLK 105
NHS PN V G + + + + +++ YG Y +
Sbjct: 100 HKANHSFTPNCIYDMFVHPRFGPIKCIRTLRAVEADEELTVAYG--YDHSPPGKSGPEAP 157
Query: 106 SQYWFDCHC 114
Y +
Sbjct: 158 EWYQVELKA 166
>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1
(PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}
Length = 323
Score = 28.2 bits (61), Expect = 0.86
Identities = 19/182 (10%), Positives = 45/182 (24%), Gaps = 8/182 (4%)
Query: 52 MFNHSCEPNIVRYFRGTMVYVNLCKNFKKGDQICENYGPLYSQVRKTERQNTLKSQYWFD 111
+ + G L S E + + D
Sbjct: 107 CEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLD 166
Query: 112 CHCIACEHDWPLFEEMQAAQDL-----RFRCETENCHNVVKVATNTTQFMIKCDKCDQFI 166
I + L + + F N + + ++ ++ +
Sbjct: 167 PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAV 226
Query: 167 NIFKGLKNLQ--DTESLFRLANNYKENGLYEKALEKFTQLMTLLDENLVPPYRDYILCQR 224
++ LQ S + L + G + +A+E F + + + P +
Sbjct: 227 AAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALN-MQRKSRGPRGEGGAMSE 285
Query: 225 SI 226
+I
Sbjct: 286 NI 287
Score = 25.5 bits (54), Expect = 7.1
Identities = 7/39 (17%), Positives = 12/39 (30%)
Query: 169 FKGLKNLQDTESLFRLANNYKENGLYEKALEKFTQLMTL 207
F+ L+D F + G A+ F +
Sbjct: 10 FEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ 48
>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase
alpha-subunit, N-terminal domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 334
Score = 28.0 bits (61), Expect = 0.94
Identities = 8/119 (6%), Positives = 29/119 (24%), Gaps = 3/119 (2%)
Query: 91 LYSQVRKTERQNTLKSQYWFDCHCIACEHDWPLFEEMQAAQDLRFRCETENCHNVVKVAT 150
L + + + + + + + R + +
Sbjct: 188 LPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCE- 246
Query: 151 NTTQFMIKCDKCDQFINIFKGL--KNLQDTESLFRLANNYKENGLYEKALEKFTQLMTL 207
+ + + + L +N ++ L ++ L+ F+ L +
Sbjct: 247 LSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 305
>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey
(Saimiri boliviensis) [TaxId: 27679]}
Length = 168
Score = 26.8 bits (58), Expect = 1.8
Identities = 11/70 (15%), Positives = 28/70 (40%)
Query: 175 LQDTESLFRLANNYKENGLYEKALEKFTQLMTLLDENLVPPYRDYILCQRSIQTCFLNLG 234
L+ + Y + G Y +A+ ++ ++++ L+ ++ + + FLNL
Sbjct: 12 LEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLA 71
Query: 235 QKCLNKEDMN 244
L +
Sbjct: 72 MCYLKLREYT 81
>d1tvca2 c.25.1.2 (A:111-251) Methane monooxygenase component C,
MmoC {Methylococcus capsulatus [TaxId: 414]}
Length = 141
Score = 26.5 bits (57), Expect = 1.9
Identities = 11/85 (12%), Positives = 19/85 (22%)
Query: 43 GAGIFPTLSMFNHSCEPNIVRYFRGTMVYVNLCKNFKKGDQICENYGPLYSQVRKTERQN 102
G G+ P +SM E R + F + V+
Sbjct: 17 GTGLAPVVSMVRQMQEWTAPNETRIYFGVNTEPELFYIDELKSLERSMRNLTVKACVWHP 76
Query: 103 TLKSQYWFDCHCIACEHDWPLFEEM 127
+ + A D +
Sbjct: 77 SGDWEGEQGSPIDALREDLESSDAN 101
>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing
protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 201
Score = 26.8 bits (58), Expect = 2.4
Identities = 8/66 (12%), Positives = 17/66 (25%)
Query: 179 ESLFRLANNYKENGLYEKALEKFTQLMTLLDENLVPPYRDYILCQRSIQTCFLNLGQKCL 238
+ L N Y +A + + +T V + + Q +
Sbjct: 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRA 64
Query: 239 NKEDMN 244
+ D
Sbjct: 65 LELDGQ 70
>d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 269
Score = 26.7 bits (58), Expect = 2.5
Identities = 13/65 (20%), Positives = 25/65 (38%), Gaps = 9/65 (13%)
Query: 35 ESSKTRFIGAGIFPTLSMF-NHSCEPN----IVRYFRGTMVYVNLC----KNFKKGDQIC 85
+ + + A + +S F NHSC PN G +L K+ + +++
Sbjct: 197 DDASEYTVDAQNYGDVSRFFNHSCSPNIAIYSAVRNHGFRTIYDLAFFAIKDIQPLEELT 256
Query: 86 ENYGP 90
+Y
Sbjct: 257 FDYAG 261
>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio
parahaemolyticus [TaxId: 670]}
Length = 264
Score = 26.5 bits (58), Expect = 2.5
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 176 QDTESLFRLANNYKENGLYEKALEKFTQLMTL 207
+D +G +E+A E+ Q + L
Sbjct: 28 KDASLRSSFIELLCIDGDFERADEQLMQSIKL 59
>d1plqa1 d.131.1.2 (A:1-126) Proliferating cell nuclear antigen
(PCNA) {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 126
Score = 25.9 bits (57), Expect = 2.5
Identities = 6/45 (13%), Positives = 16/45 (35%)
Query: 124 FEEMQAAQDLRFRCETENCHNVVKVATNTTQFMIKCDKCDQFINI 168
F+E + + + + +++ NT + D I +
Sbjct: 57 FQEYRCDHPVTLGMDLTSLSKILRCGNNTDTLTLIADNTPDSIIL 101
>d1a9xa2 c.24.1.1 (A:936-1073) Carbamoyl phosphate synthetase, large
subunit allosteric, C-terminal domain {Escherichia coli
[TaxId: 562]}
Length = 138
Score = 26.1 bits (57), Expect = 2.6
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 156 MIKCDKCDQFINIFKGLKNLQDTESLFRLANNYK 189
IK + IN G + ++D+ + R A YK
Sbjct: 69 RIKNGEYTYIINTTSGRRAIEDSRVIRRSALQYK 102
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT
{Human (Homo sapiens) [TaxId: 9606]}
Length = 388
Score = 26.9 bits (58), Expect = 2.7
Identities = 8/31 (25%), Positives = 12/31 (38%)
Query: 181 LFRLANNYKENGLYEKALEKFTQLMTLLDEN 211
LA+ + G +E A QL +N
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDN 32
>d1imhc2 b.2.5.3 (C:188-367) T-cell transcription factor NFAT5
(TONEBP), DNA-binding domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 180
Score = 26.3 bits (58), Expect = 3.1
Identities = 9/31 (29%), Positives = 10/31 (32%)
Query: 128 QAAQDLRFRCETENCHNVVKVATNTTQFMIK 158
Q R R TE VK T +K
Sbjct: 24 QPETQHRARYLTEGSRGSVKDRTQQGFPTVK 54
>d2fiya1 e.59.1.1 (A:19-308) FdhE homolog PA4809 {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 290
Score = 26.4 bits (58), Expect = 3.2
Identities = 14/79 (17%), Positives = 25/79 (31%), Gaps = 25/79 (31%)
Query: 90 PLYSQVRKTERQNTLKSQYWFDCHCIACEHDWP-------------------LFEEMQAA 130
P+ +R+ ++ L+ C C +W L + Q A
Sbjct: 174 PMAGMIRQGGKETGLR-----YLSCSLCACEWHYVRIKCSHCEESKHLAYLSLEHDGQPA 228
Query: 131 QDLRFRCET-ENCHNVVKV 148
+ R ET +C +K
Sbjct: 229 EKAVLRAETCPSCQGYLKQ 247
>d2ce7a1 a.269.1.1 (A:411-603) Cell division protein FtsH,
C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Length = 193
Score = 26.2 bits (57), Expect = 3.5
Identities = 8/71 (11%), Positives = 24/71 (33%), Gaps = 9/71 (12%)
Query: 88 YGPLYSQVRKTERQNTLKSQYWFDCHCIACEHDWPLFEEMQAAQDLRFRCETENCHNVVK 147
+ + ++ +++ + +AA+++ F T N ++
Sbjct: 42 ALGYTLHLPEEDKYLVSRNELLDKLTALLGG---------RAAEEVVFGDVTSGAANDIE 92
Query: 148 VATNTTQFMIK 158
AT + M+
Sbjct: 93 RATEIARNMVC 103
>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 25.2 bits (54), Expect = 3.8
Identities = 7/68 (10%), Positives = 14/68 (20%), Gaps = 8/68 (11%)
Query: 179 ESLFRLANNYKENGLYEKALEKFTQLMTLLDENLVPPYRDYILCQRSIQTCFLNLGQKCL 238
E F L Y Q + + + + L
Sbjct: 6 EDSFELGKVAYTEADYYHTELWMEQALRQ--------LDEGEISTIDKVSVLDYLSYAVY 57
Query: 239 NKEDMNGT 246
+ D++
Sbjct: 58 QQGDLDKA 65
>d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId:
5141]}
Length = 284
Score = 26.1 bits (56), Expect = 3.9
Identities = 16/109 (14%), Positives = 32/109 (29%), Gaps = 10/109 (9%)
Query: 15 HQIQCLQFNCHEVADLVGTGESSKTRFIGAGIFPTLSMF-NHSCEPNIVRYFRGTMVYVN 73
+ + D + + + + + F NHSC+PN+ + R
Sbjct: 177 KDVYLFALDKFSDPDSLDPLLAGQPLEVDGEYMSGPTRFINHSCDPNMAIFARVGDHADK 236
Query: 74 L--------CKNFKKGDQICENYGPLYSQVRKTERQNTLKSQYWFDCHC 114
K+ KG ++ +Y + + K C C
Sbjct: 237 HIHDLALFAIKDIPKGTELTFDYVNGLTGLESDAHD-PSKISEMTKCLC 284
>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 159
Score = 25.4 bits (54), Expect = 4.8
Identities = 15/75 (20%), Positives = 28/75 (37%)
Query: 173 KNLQDTESLFRLANNYKENGLYEKALEKFTQLMTLLDENLVPPYRDYILCQRSIQTCFLN 232
L+ E L AN+Y + YE A++ ++Q + L N + + R+ +
Sbjct: 5 GALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYAL 64
Query: 233 LGQKCLNKEDMNGTK 247
+ D K
Sbjct: 65 GDATRAIELDKKYIK 79
>d1fuia1 b.43.2.1 (A:356-591) L-fucose isomerase, C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 236
Score = 25.5 bits (56), Expect = 6.5
Identities = 7/12 (58%), Positives = 10/12 (83%)
Query: 83 QICENYGPLYSQ 94
+ C+NYGPLY +
Sbjct: 225 RACQNYGPLYKR 236
>g1dy9.1 b.47.1.3 (A:,C:) NS3 protease {Human hepatitis C virus
(HCV), different isolates [TaxId: 11103]}
Length = 187
Score = 25.0 bits (55), Expect = 7.0
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 136 RCETENCHNVVKVATNTTQFMIKC 159
R + + V ++T T F+ C
Sbjct: 24 RDKNQVDGEVQVLSTATQSFLATC 47
>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl
isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}
Length = 153
Score = 24.6 bits (52), Expect = 8.6
Identities = 10/71 (14%), Positives = 27/71 (38%), Gaps = 1/71 (1%)
Query: 175 LQDTESLFRLANNYKENGLYEKALEKFTQLMTLLDENLVPPYRDYILCQRSIQ-TCFLNL 233
+Q + N + + +A+ K+ + + + + +++I+ +C LNL
Sbjct: 14 VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNL 73
Query: 234 GQKCLNKEDMN 244
+D
Sbjct: 74 ATCYNKNKDYP 84
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.139 0.438
Gapped
Lambda K H
0.267 0.0708 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 936,442
Number of extensions: 43192
Number of successful extensions: 216
Number of sequences better than 10.0: 1
Number of HSP's gapped: 214
Number of HSP's successfully gapped: 63
Length of query: 247
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 164
Effective length of database: 1,268,006
Effective search space: 207952984
Effective search space used: 207952984
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (23.9 bits)