BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5736
(346 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OXF|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form I)
pdb|3OXF|B Chain B, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form I)
Length = 436
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 54/100 (54%), Gaps = 2/100 (2%)
Query: 113 FNAHEVYETLFKTKHHFPNAKINYVGVGIYPTVSLFNHDCYPAVTRYFNGKNIIVKALRP 172
F+ E + + NA++ VGVG+YP++SL NH C P + FNG +++++A+R
Sbjct: 169 FDLFEAFAKVICNSFTICNAEMQEVGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRD 228
Query: 173 LKPKEVVAENYGLVFSRKHLIDRQKVLSARYWFECKCRAC 212
++ E + Y + +R+K L +Y FEC C C
Sbjct: 229 IEVGEELTICYLDMLMTSE--ERRKQLRDQYCFECDCFRC 266
>pdb|3RU0|A Chain A, Cocrystal Structure Of Human Smyd3 With Inhibitor
Sinefungin Bound
pdb|3RU0|B Chain B, Cocrystal Structure Of Human Smyd3 With Inhibitor
Sinefungin Bound
Length = 438
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 54/100 (54%), Gaps = 2/100 (2%)
Query: 113 FNAHEVYETLFKTKHHFPNAKINYVGVGIYPTVSLFNHDCYPAVTRYFNGKNIIVKALRP 172
F+ E + + NA++ VGVG+YP++SL NH C P + FNG +++++A+R
Sbjct: 171 FDLFEAFAKVICNSFTICNAEMQEVGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRD 230
Query: 173 LKPKEVVAENYGLVFSRKHLIDRQKVLSARYWFECKCRAC 212
++ E + Y + +R+K L +Y FEC C C
Sbjct: 231 IEVGEELTICYLDMLMTSE--ERRKQLRDQYCFECDCFRC 268
>pdb|3QWP|A Chain A, Crystal Structure Of Set And Mynd Domain Containing 3;
Zinc Finger Mynd Domain-Containing Protein 1
Length = 429
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 54/100 (54%), Gaps = 2/100 (2%)
Query: 113 FNAHEVYETLFKTKHHFPNAKINYVGVGIYPTVSLFNHDCYPAVTRYFNGKNIIVKALRP 172
F+ E + + NA++ VGVG+YP++SL NH C P + FNG +++++A+R
Sbjct: 170 FDLFEAFAKVICNSFTICNAEMQEVGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRD 229
Query: 173 LKPKEVVAENYGLVFSRKHLIDRQKVLSARYWFECKCRAC 212
++ E + Y + +R+K L +Y FEC C C
Sbjct: 230 IEVGEELTICYLDMLMTSE--ERRKQLRDQYCFECDCFRC 267
>pdb|3OXG|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form Iii)
Length = 464
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 54/100 (54%), Gaps = 2/100 (2%)
Query: 113 FNAHEVYETLFKTKHHFPNAKINYVGVGIYPTVSLFNHDCYPAVTRYFNGKNIIVKALRP 172
F+ E + + NA++ VGVG+YP++SL NH C P + FNG +++++A+R
Sbjct: 205 FDLFEAFAKVICNSFTICNAEMQEVGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRD 264
Query: 173 LKPKEVVAENYGLVFSRKHLIDRQKVLSARYWFECKCRAC 212
++ E + Y + +R+K L +Y FEC C C
Sbjct: 265 IEVGEELTICYLDMLMTSE--ERRKQLRDQYCFECDCFRC 302
>pdb|3PDN|A Chain A, Crystal Structure Of Smyd3 In Complex With
Methyltransferase Inhibitor Sinefungin
pdb|3OXL|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form Ii)
Length = 428
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 54/100 (54%), Gaps = 2/100 (2%)
Query: 113 FNAHEVYETLFKTKHHFPNAKINYVGVGIYPTVSLFNHDCYPAVTRYFNGKNIIVKALRP 172
F+ E + + NA++ VGVG+YP++SL NH C P + FNG +++++A+R
Sbjct: 169 FDLFEAFAKVICNSFTICNAEMQEVGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRD 228
Query: 173 LKPKEVVAENYGLVFSRKHLIDRQKVLSARYWFECKCRAC 212
++ E + Y + +R+K L +Y FEC C C
Sbjct: 229 IEVGEELTICYLDMLMTSE--ERRKQLRDQYCFECDCFRC 266
>pdb|3MEK|A Chain A, Crystal Structure Of Human Histone-Lysine N-
Methyltransferase Smyd3 In Complex With S-Adenosyl-L-
Methionine
Length = 429
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 52/100 (52%), Gaps = 2/100 (2%)
Query: 113 FNAHEVYETLFKTKHHFPNAKINYVGVGIYPTVSLFNHDCYPAVTRYFNGKNIIVKALRP 172
F+ E + + NA+ VGVG+YP++SL NH C P + FNG +++++A+R
Sbjct: 170 FDLFEAFAKVICNSFTICNAEXQEVGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRD 229
Query: 173 LKPKEVVAENYGLVFSRKHLIDRQKVLSARYWFECKCRAC 212
++ E + Y +R+K L +Y FEC C C
Sbjct: 230 IEVGEELTICYLDXLXTSE--ERRKQLRDQYCFECDCFRC 267
>pdb|3QWV|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase
Smyd2 In Complex With The Cofactor Product Adohcy
pdb|3QWW|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase
Smyd2 In Complex With The Methyltransferase Inhibitor
Sinefungin
Length = 433
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 85/194 (43%), Gaps = 17/194 (8%)
Query: 29 WARNSARCTALTLLNEH---DDSLLLTGYDDGSLSVYRNYASHEHRL-VTSFQALTDTSF 84
W + C+++ +L E+ +++ LT ++ E L V F++ D
Sbjct: 83 WPLHKLECSSMVVLGENWNPSETVRLTARILAKQKIHPERTPSEKLLAVREFESHLDK-- 140
Query: 85 VNKSLSTVLNEDEALIAQILLKSLQVLQFNAHEVYETLFK----TKHHFPNAKINYVGVG 140
++ ++ D A + Q K L+F H LF + +++++G
Sbjct: 141 LDNEKKDLIQSDIAALHQFYSK---YLEFPDHSSLVVLFAQVNCNGFTIEDEELSHLGSA 197
Query: 141 IYPTVSLFNHDCYPAVTRYFNGKNIIVKALRPLKPKEVVAENY-GLVFSRKHLIDRQKVL 199
I+P V+L NH C P V + G V+A++ + P + V +Y L++ + DR L
Sbjct: 198 IFPDVALMNHSCCPNVIVTYKGTLAEVRAVQEIHPGDEVFTSYIDLLYPTE---DRNDRL 254
Query: 200 SARYWFECKCRACV 213
Y+F C+CR C
Sbjct: 255 RDSYFFTCECRECT 268
>pdb|3RIB|A Chain A, Human Lysine Methyltransferase Smyd2 In Complex With
Adohcy
pdb|3RIB|B Chain B, Human Lysine Methyltransferase Smyd2 In Complex With
Adohcy
Length = 441
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 47/84 (55%), Gaps = 4/84 (4%)
Query: 131 NAKINYVGVGIYPTVSLFNHDCYPAVTRYFNGKNIIVKALRPLKPKEVVAENY-GLVFSR 189
+ +++++G I+P V+L NH C P V + G V+A++ +KP E V +Y L++
Sbjct: 188 DEELSHLGSAIFPDVALMNHSCCPNVIVTYKGTLAEVRAVQEIKPGEEVFTSYIDLLYPT 247
Query: 190 KHLIDRQKVLSARYWFECKCRACV 213
+ DR L Y+F C+C+ C
Sbjct: 248 E---DRNDRLRDSYFFTCECQECT 268
>pdb|3S7B|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
pdb|3S7D|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
pdb|3S7F|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
pdb|3S7J|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
Length = 433
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 47/84 (55%), Gaps = 4/84 (4%)
Query: 131 NAKINYVGVGIYPTVSLFNHDCYPAVTRYFNGKNIIVKALRPLKPKEVVAENY-GLVFSR 189
+ +++++G I+P V+L NH C P V + G V+A++ +KP E V +Y L++
Sbjct: 188 DEELSHLGSAIFPDVALMNHSCCPNVIVTYKGTLAEVRAVQEIKPGEEVFTSYIDLLYPT 247
Query: 190 KHLIDRQKVLSARYWFECKCRACV 213
+ DR L Y+F C+C+ C
Sbjct: 248 E---DRNDRLRDSYFFTCECQECT 268
>pdb|3TG4|A Chain A, Structure Of Smyd2 In Complex With Sam
pdb|3TG5|A Chain A, Structure Of Smyd2 In Complex With P53 And Sah
Length = 433
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 47/84 (55%), Gaps = 4/84 (4%)
Query: 131 NAKINYVGVGIYPTVSLFNHDCYPAVTRYFNGKNIIVKALRPLKPKEVVAENY-GLVFSR 189
+ +++++G I+P V+L NH C P V + G V+A++ +KP E V +Y L++
Sbjct: 188 DEELSHLGSAIFPDVALMNHSCCPNVIVTYKGTLAEVRAVQEIKPGEEVFTSYIDLLYPT 247
Query: 190 KHLIDRQKVLSARYWFECKCRACV 213
+ DR L Y+F C+C+ C
Sbjct: 248 E---DRNDRLRDSYFFTCECQECT 268
>pdb|3N71|A Chain A, Crystal Structure Of Cardiac Specific Histone
Methyltransferase Smyd1
Length = 490
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 17/93 (18%)
Query: 134 INYVGVGIYPTVSLFNHDCYPAVTRYFNGKN-------------IIVKALRPLKPKEVVA 180
+ VGVGI+P + L NHDC+P T FN N I ++AL + E +
Sbjct: 190 LQAVGVGIFPNLGLVNHDCWPNCTVIFNNGNHEAVKSMFHTQMRIELRALGKISEGEELT 249
Query: 181 ENYGLVFSRKHLI-DRQKVLSARYWFECKCRAC 212
+Y HL +R++ L +Y+F+C C C
Sbjct: 250 VSY---IDFLHLSEERRRQLKKQYYFDCSCEHC 279
>pdb|3S8P|A Chain A, Crystal Structure Of The Set Domain Of Human
Histone-Lysine N- Methyltransferase Suv420h1 In Complex
With S-Adenosyl-L-Methionine
pdb|3S8P|B Chain B, Crystal Structure Of The Set Domain Of Human
Histone-Lysine N- Methyltransferase Suv420h1 In Complex
With S-Adenosyl-L-Methionine
Length = 273
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 145 VSLFNHDCYPAVTRYFNGKNI-IVKALRPLKPKEVVAENYGLVF 187
+ NHDC P G++ VKALR ++P E ++ YG F
Sbjct: 206 AAFINHDCRPNCKFVSTGRDTACVKALRDIEPGEEISCYYGDGF 249
>pdb|4FHN|B Chain B, Nup37-Nup120 Full-Length Complex From Schizosaccharomyces
Pombe
pdb|4FHN|D Chain D, Nup37-Nup120 Full-Length Complex From Schizosaccharomyces
Pombe
Length = 1139
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 57/137 (41%), Gaps = 33/137 (24%)
Query: 42 LNEHDDSLLLTGYDDGSLSVYRNYAS-----HEHRLVTSFQALTDTSFVNKSLSTVLNED 96
L+ D +L +D + Y NYA+ + L+ SF D + K +S++ +D
Sbjct: 515 LDHFGDEILSINFDPSNAVTYINYANKVAFIRDPYLIESF----DEEPLTKLISSLETDD 570
Query: 97 EALIA--QIL-----------LKSLQVLQFNAHEVYETL-----------FKTKHHFPNA 132
+LI QIL +L ++++ E+ + L F KH +PN
Sbjct: 571 PSLIEGYQILDLGRSLHSCMSFSTLSEIRYSLRELVQDLPSYSLFDTLWVFYDKHIYPNV 630
Query: 133 KINYVGVGIYPTVSLFN 149
+Y+ I VSL N
Sbjct: 631 DPDYISTLIDTLVSLEN 647
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,086,456
Number of Sequences: 62578
Number of extensions: 377349
Number of successful extensions: 892
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 865
Number of HSP's gapped (non-prelim): 20
length of query: 346
length of database: 14,973,337
effective HSP length: 100
effective length of query: 246
effective length of database: 8,715,537
effective search space: 2144022102
effective search space used: 2144022102
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)