Query psy5736
Match_columns 346
No_of_seqs 336 out of 1547
Neff 7.2
Searched_HMMs 29240
Date Fri Aug 16 16:42:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5736.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5736hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3n71_A Histone lysine methyltr 100.0 4.6E-31 1.6E-35 266.3 18.1 264 19-335 73-368 (490)
2 3qww_A SET and MYND domain-con 100.0 4.3E-31 1.5E-35 262.8 17.4 263 18-335 72-357 (433)
3 3qwp_A SET and MYND domain-con 100.0 2E-29 6.8E-34 250.5 14.3 255 18-335 70-346 (429)
4 3rq4_A Histone-lysine N-methyl 99.5 8.1E-15 2.8E-19 134.7 4.6 68 137-216 168-237 (247)
5 3s8p_A Histone-lysine N-methyl 99.4 1.4E-13 4.7E-18 127.9 3.7 61 142-214 203-264 (273)
6 1n3j_A A612L, histone H3 lysin 99.3 8.3E-13 2.8E-17 108.2 3.0 51 137-187 57-109 (119)
7 2w5y_A Histone-lysine N-methyl 99.1 3.9E-11 1.3E-15 106.3 5.7 56 144-210 124-183 (192)
8 3f9x_A Histone-lysine N-methyl 99.0 8E-11 2.7E-15 101.6 1.8 43 144-186 107-153 (166)
9 3ope_A Probable histone-lysine 99.0 3.1E-10 1.1E-14 102.8 4.6 43 144-186 146-192 (222)
10 3ooi_A Histone-lysine N-methyl 99.0 3.4E-10 1.2E-14 103.2 4.7 55 144-210 165-223 (232)
11 3h6l_A Histone-lysine N-methyl 98.9 1.5E-09 5.1E-14 101.5 5.0 43 144-186 190-236 (278)
12 3hna_A Histone-lysine N-methyl 98.8 1E-09 3.4E-14 103.1 2.7 62 139-210 210-280 (287)
13 1ml9_A Histone H3 methyltransf 98.8 1.7E-09 5.7E-14 102.4 4.3 64 144-209 220-292 (302)
14 2r3a_A Histone-lysine N-methyl 98.7 7.7E-09 2.6E-13 97.7 5.5 43 144-186 215-265 (300)
15 1mvh_A Cryptic LOCI regulator 98.7 7E-09 2.4E-13 97.9 5.2 44 144-187 213-264 (299)
16 1h3i_A Histone H3 lysine 4 spe 98.7 4.7E-09 1.6E-13 98.7 3.0 42 144-185 240-286 (293)
17 3qxy_A N-lysine methyltransfer 98.7 1.2E-08 4E-13 101.6 6.0 65 136-208 214-278 (449)
18 3smt_A Histone-lysine N-methyl 98.7 1.4E-08 4.6E-13 102.4 6.4 67 136-210 264-331 (497)
19 2f69_A Histone-lysine N-methyl 98.7 7.1E-09 2.4E-13 96.0 4.0 43 144-186 186-233 (261)
20 2qpw_A PR domain zinc finger p 98.7 1.5E-08 5.2E-13 86.1 4.7 42 145-186 100-144 (149)
21 3bo5_A Histone-lysine N-methyl 98.6 1.8E-08 6.2E-13 94.7 4.7 44 144-187 205-253 (290)
22 2h21_A Ribulose-1,5 bisphospha 98.3 7.1E-07 2.4E-11 88.3 6.5 65 138-209 183-258 (440)
23 3db5_A PR domain zinc finger p 97.9 6.3E-06 2.1E-10 70.0 4.4 44 144-187 97-143 (151)
24 3ep0_A PR domain zinc finger p 97.8 1.4E-05 4.8E-10 69.1 4.4 44 144-187 101-147 (170)
25 3dal_A PR domain zinc finger p 97.6 3.2E-05 1.1E-09 68.3 3.8 43 145-187 132-177 (196)
26 3ihx_A PR domain zinc finger p 97.5 6.8E-05 2.3E-09 63.6 3.7 43 145-187 97-142 (152)
27 3ray_A PR domain-containing pr 97.2 0.00016 5.6E-09 65.4 3.7 44 144-187 140-186 (237)
28 4ggc_A P55CDC, cell division c 96.8 0.0019 6.3E-08 58.1 6.2 56 2-64 41-96 (318)
29 4h5i_A Guanine nucleotide-exch 96.5 0.0035 1.2E-07 59.2 6.6 54 3-64 288-341 (365)
30 4gga_A P55CDC, cell division c 96.5 0.0033 1.1E-07 60.1 6.3 56 2-64 121-176 (420)
31 4ggc_A P55CDC, cell division c 96.4 0.0046 1.6E-07 55.4 6.6 54 4-66 262-315 (318)
32 4e54_B DNA damage-binding prot 96.0 0.0086 2.9E-07 57.5 6.3 55 3-63 139-193 (435)
33 4gga_A P55CDC, cell division c 95.8 0.013 4.3E-07 55.9 6.6 54 4-66 342-395 (420)
34 4aow_A Guanine nucleotide-bind 95.5 0.023 8E-07 51.3 6.6 60 3-64 274-335 (340)
35 3gre_A Serine/threonine-protei 95.0 0.027 9.3E-07 53.4 5.7 61 3-63 347-437 (437)
36 3vu4_A KMHSV2; beta-propeller 94.8 0.047 1.6E-06 51.0 6.6 56 3-65 214-270 (355)
37 4g56_B MGC81050 protein; prote 94.6 0.044 1.5E-06 51.3 6.0 54 3-65 289-342 (357)
38 3iz6_a 40S ribosomal protein R 94.5 0.067 2.3E-06 50.2 7.2 59 3-64 177-235 (380)
39 1vyh_C Platelet-activating fac 94.4 0.046 1.6E-06 52.1 5.8 52 3-63 127-178 (410)
40 3bg1_A Protein SEC13 homolog; 94.4 0.03 1E-06 51.3 4.2 55 3-64 32-88 (316)
41 4gqb_B Methylosome protein 50; 94.4 0.031 1.1E-06 52.4 4.4 57 3-64 100-156 (344)
42 4gqb_B Methylosome protein 50; 94.3 0.064 2.2E-06 50.2 6.5 54 3-64 146-199 (344)
43 2ynn_A Coatomer subunit beta'; 94.3 0.066 2.2E-06 48.5 6.3 52 3-63 74-125 (304)
44 3v7d_B Cell division control p 94.0 0.076 2.6E-06 50.7 6.3 56 3-65 180-235 (464)
45 3f3f_A Nucleoporin SEH1; struc 93.9 0.043 1.5E-06 48.9 4.2 55 3-64 30-88 (351)
46 2pm7_B Protein transport prote 93.9 0.059 2E-06 48.7 5.2 55 3-64 28-84 (297)
47 1erj_A Transcriptional repress 93.9 0.08 2.7E-06 49.9 6.3 54 3-63 329-386 (393)
48 3k26_A Polycomb protein EED; W 93.8 0.11 3.6E-06 47.2 6.7 57 3-65 135-191 (366)
49 3iz6_a 40S ribosomal protein R 93.8 0.12 4.2E-06 48.4 7.3 57 3-64 317-373 (380)
50 3frx_A Guanine nucleotide-bind 93.7 0.099 3.4E-06 47.8 6.3 53 3-64 84-136 (319)
51 2pbi_B Guanine nucleotide-bind 93.6 0.11 3.6E-06 48.5 6.5 55 3-64 173-227 (354)
52 2ynn_A Coatomer subunit beta'; 93.6 0.11 3.6E-06 47.1 6.3 56 3-64 160-215 (304)
53 3mmy_A MRNA export factor; mRN 93.5 0.096 3.3E-06 47.4 5.8 54 3-64 105-158 (368)
54 1erj_A Transcriptional repress 93.4 0.12 4E-06 48.8 6.5 61 3-65 226-286 (393)
55 2ovr_B FBW7, F-BOX/WD repeat p 93.4 0.12 4.3E-06 49.1 6.7 55 3-65 336-390 (445)
56 3k26_A Polycomb protein EED; W 93.4 0.13 4.3E-06 46.6 6.4 54 3-64 92-145 (366)
57 1got_B GT-beta; complex (GTP-b 93.4 0.13 4.5E-06 47.3 6.6 56 3-65 245-300 (340)
58 3qwp_A SET and MYND domain-con 93.3 0.2 6.9E-06 48.9 8.1 49 286-334 339-387 (429)
59 3qww_A SET and MYND domain-con 93.2 0.23 7.8E-06 48.7 8.3 50 285-334 349-398 (433)
60 4e54_B DNA damage-binding prot 93.1 0.077 2.6E-06 50.7 4.7 56 3-64 270-325 (435)
61 3jrp_A Fusion protein of prote 92.9 0.1 3.4E-06 47.6 5.0 55 3-64 30-86 (379)
62 3bg1_A Protein SEC13 homolog; 92.9 0.11 3.6E-06 47.5 5.1 55 3-64 78-134 (316)
63 3ow8_A WD repeat-containing pr 92.8 0.11 3.9E-06 47.6 5.2 55 3-64 55-109 (321)
64 2xzm_R RACK1; ribosome, transl 92.7 0.17 5.7E-06 46.6 6.3 53 3-64 95-147 (343)
65 2pm7_B Protein transport prote 92.7 0.11 3.9E-06 46.7 5.1 55 3-64 74-130 (297)
66 2vdu_B TRNA (guanine-N(7)-)-me 92.7 0.15 5E-06 48.9 6.1 54 3-65 217-270 (450)
67 3gre_A Serine/threonine-protei 92.7 0.14 4.8E-06 48.3 5.8 55 3-64 189-243 (437)
68 3fm0_A Protein CIAO1; WDR39,SG 92.7 0.13 4.4E-06 47.6 5.4 55 3-63 35-89 (345)
69 1p22_A F-BOX/WD-repeat protein 92.7 0.17 6E-06 48.0 6.5 51 3-64 150-200 (435)
70 3lrv_A PRE-mRNA-splicing facto 92.7 0.18 6.2E-06 46.2 6.4 55 3-65 146-200 (343)
71 3v7d_B Cell division control p 92.6 0.17 5.7E-06 48.2 6.3 52 3-64 139-190 (464)
72 1got_B GT-beta; complex (GTP-b 92.6 0.19 6.5E-06 46.2 6.4 54 3-65 203-256 (340)
73 3f3f_A Nucleoporin SEH1; struc 92.5 0.18 6.1E-06 44.8 6.1 56 3-65 78-142 (351)
74 2hes_X YDR267CP; beta-propelle 92.5 0.14 4.7E-06 47.0 5.3 55 3-63 268-325 (330)
75 4aez_A CDC20, WD repeat-contai 92.5 0.18 6.1E-06 47.4 6.2 54 3-64 110-163 (401)
76 3n71_A Histone lysine methyltr 92.4 0.32 1.1E-05 48.3 8.3 49 286-334 361-409 (490)
77 3ei3_B DNA damage-binding prot 92.4 0.15 5.1E-06 47.2 5.6 57 3-65 93-149 (383)
78 1p22_A F-BOX/WD-repeat protein 92.3 0.21 7E-06 47.5 6.5 51 3-64 313-363 (435)
79 2pbi_B Guanine nucleotide-bind 92.1 0.23 7.7E-06 46.2 6.4 54 3-65 217-270 (354)
80 2aq5_A Coronin-1A; WD40 repeat 92.1 0.21 7.2E-06 46.8 6.2 55 3-64 151-205 (402)
81 3fm0_A Protein CIAO1; WDR39,SG 92.1 0.17 5.8E-06 46.7 5.5 56 3-65 169-224 (345)
82 3ow8_A WD repeat-containing pr 91.9 0.24 8.2E-06 45.4 6.3 53 3-64 183-235 (321)
83 4aow_A Guanine nucleotide-bind 91.8 0.27 9.2E-06 44.1 6.4 54 3-65 192-245 (340)
84 2xzm_R RACK1; ribosome, transl 91.8 0.092 3.1E-06 48.4 3.3 60 3-64 46-105 (343)
85 3dw8_B Serine/threonine-protei 91.8 0.28 9.4E-06 46.1 6.7 55 3-64 47-124 (447)
86 3zwl_B Eukaryotic translation 91.7 0.28 9.6E-06 44.2 6.4 53 3-64 51-103 (369)
87 3i2n_A WD repeat-containing pr 91.7 0.24 8.1E-06 44.7 5.9 56 3-65 87-147 (357)
88 3mmy_A MRNA export factor; mRN 91.5 0.21 7.2E-06 45.0 5.4 53 3-64 61-115 (368)
89 1vyh_C Platelet-activating fac 91.5 0.24 8.4E-06 46.9 6.0 53 3-64 315-367 (410)
90 2j04_B YDR362CP, TAU91; beta p 91.5 0.19 6.4E-06 50.3 5.3 55 3-64 284-340 (524)
91 2aq5_A Coronin-1A; WD40 repeat 91.4 0.18 6.1E-06 47.2 4.9 54 3-64 101-161 (402)
92 4gq1_A NUP37; propeller, trans 91.4 0.15 5.3E-06 48.1 4.5 60 3-64 108-173 (393)
93 4g56_B MGC81050 protein; prote 91.4 0.22 7.6E-06 46.3 5.5 56 3-64 201-256 (357)
94 1nr0_A Actin interacting prote 91.4 0.35 1.2E-05 48.5 7.3 60 3-64 209-268 (611)
95 3jrp_A Fusion protein of prote 91.4 0.2 6.7E-06 45.6 5.0 56 3-65 76-133 (379)
96 3dw8_B Serine/threonine-protei 91.3 0.24 8.1E-06 46.5 5.6 63 2-65 194-257 (447)
97 4a11_B DNA excision repair pro 91.2 0.36 1.2E-05 44.2 6.7 54 3-65 311-364 (408)
98 4gq1_A NUP37; propeller, trans 91.2 0.15 5E-06 48.2 4.0 55 3-65 163-217 (393)
99 3odt_A Protein DOA1; ubiquitin 91.1 0.32 1.1E-05 42.9 6.0 53 3-65 243-295 (313)
100 3odt_A Protein DOA1; ubiquitin 91.1 0.33 1.1E-05 42.8 6.1 55 3-66 36-90 (313)
101 1sq9_A Antiviral protein SKI8; 90.9 0.36 1.2E-05 44.4 6.4 62 3-64 310-393 (397)
102 3vl1_A 26S proteasome regulato 90.8 0.4 1.4E-05 44.6 6.7 56 3-65 266-321 (420)
103 4ery_A WD repeat-containing pr 90.8 0.35 1.2E-05 43.3 6.1 57 3-65 211-267 (312)
104 3frx_A Guanine nucleotide-bind 90.7 0.43 1.5E-05 43.4 6.6 54 3-65 173-226 (319)
105 4ery_A WD repeat-containing pr 90.6 0.42 1.5E-05 42.7 6.4 53 3-64 42-94 (312)
106 2pm9_A Protein WEB1, protein t 90.5 0.35 1.2E-05 44.7 6.0 55 3-65 282-336 (416)
107 3jro_A Fusion protein of prote 90.5 0.28 9.6E-06 50.8 5.7 54 3-63 28-83 (753)
108 1pgu_A Actin interacting prote 90.4 0.38 1.3E-05 47.0 6.4 56 3-64 226-281 (615)
109 3vl1_A 26S proteasome regulato 90.4 0.37 1.3E-05 44.9 6.0 59 3-65 200-277 (420)
110 2hes_X YDR267CP; beta-propelle 90.3 0.34 1.2E-05 44.3 5.6 55 3-64 172-228 (330)
111 2ymu_A WD-40 repeat protein; u 89.8 0.38 1.3E-05 47.0 5.8 51 3-63 35-85 (577)
112 2pm9_A Protein WEB1, protein t 89.8 0.32 1.1E-05 45.0 5.1 56 3-65 42-97 (416)
113 2ovr_B FBW7, F-BOX/WD repeat p 89.7 0.41 1.4E-05 45.4 5.8 52 3-65 176-227 (445)
114 3lrv_A PRE-mRNA-splicing facto 89.7 0.52 1.8E-05 43.1 6.3 53 3-64 189-242 (343)
115 1pgu_A Actin interacting prote 89.7 0.49 1.7E-05 46.2 6.5 57 3-65 507-571 (615)
116 2w18_A PALB2, fancn, partner a 89.3 0.51 1.7E-05 45.1 6.0 21 3-23 200-220 (356)
117 3vu4_A KMHSV2; beta-propeller 89.3 0.56 1.9E-05 43.4 6.3 54 3-65 156-226 (355)
118 2oit_A Nucleoporin 214KDA; NH2 89.2 0.23 7.9E-06 48.0 3.7 57 3-64 115-179 (434)
119 3sfz_A APAF-1, apoptotic pepti 89.2 0.51 1.7E-05 51.1 6.7 55 3-64 676-730 (1249)
120 1k8k_C P40, ARP2/3 complex 41 89.1 0.54 1.9E-05 42.6 5.9 54 3-63 71-124 (372)
121 1yfq_A Cell cycle arrest prote 89.1 0.64 2.2E-05 41.6 6.4 61 3-65 213-281 (342)
122 3dm0_A Maltose-binding peripla 89.1 0.47 1.6E-05 48.2 6.0 54 3-65 449-502 (694)
123 3i2n_A WD repeat-containing pr 88.9 0.4 1.4E-05 43.1 4.8 55 5-65 43-98 (357)
124 4aez_A CDC20, WD repeat-contai 88.8 0.54 1.8E-05 44.0 5.9 52 3-65 153-204 (401)
125 1sq9_A Antiviral protein SKI8; 88.7 0.45 1.5E-05 43.8 5.1 58 3-64 88-155 (397)
126 3dm0_A Maltose-binding peripla 88.6 0.63 2.2E-05 47.2 6.6 58 3-64 491-548 (694)
127 1k8k_C P40, ARP2/3 complex 41 88.5 0.62 2.1E-05 42.2 5.9 53 3-64 27-81 (372)
128 2xyi_A Probable histone-bindin 88.5 0.63 2.2E-05 44.2 6.2 55 3-65 297-352 (430)
129 1gxr_A ESG1, transducin-like e 88.3 0.73 2.5E-05 40.9 6.1 58 4-65 70-127 (337)
130 2xyi_A Probable histone-bindin 87.7 0.51 1.7E-05 44.9 4.9 62 3-65 201-262 (430)
131 4a11_B DNA excision repair pro 87.5 0.88 3E-05 41.6 6.3 54 3-64 163-216 (408)
132 1r5m_A SIR4-interacting protei 87.2 0.93 3.2E-05 41.6 6.3 59 3-63 65-136 (425)
133 1gxr_A ESG1, transducin-like e 86.8 1.1 3.6E-05 39.8 6.3 54 3-65 160-213 (337)
134 3dwl_C Actin-related protein 2 86.6 0.76 2.6E-05 42.0 5.3 55 3-65 119-176 (377)
135 3dwl_C Actin-related protein 2 86.6 0.39 1.3E-05 44.0 3.3 53 3-64 74-129 (377)
136 3mkq_A Coatomer beta'-subunit; 86.5 0.72 2.5E-05 47.1 5.5 52 3-63 32-83 (814)
137 3mkq_A Coatomer beta'-subunit; 86.2 1 3.5E-05 46.0 6.5 52 3-63 74-125 (814)
138 1yfq_A Cell cycle arrest prote 85.9 0.71 2.4E-05 41.3 4.6 52 3-63 76-128 (342)
139 3sfz_A APAF-1, apoptotic pepti 85.9 1 3.5E-05 48.7 6.6 53 3-64 634-686 (1249)
140 1r5m_A SIR4-interacting protei 85.9 1.2 4.2E-05 40.8 6.3 54 3-65 307-360 (425)
141 1nr0_A Actin interacting prote 85.6 1.1 3.8E-05 44.8 6.3 53 3-64 167-219 (611)
142 3jro_A Fusion protein of prote 85.6 0.71 2.4E-05 47.8 5.0 55 3-64 74-130 (753)
143 2oit_A Nucleoporin 214KDA; NH2 85.5 0.79 2.7E-05 44.2 5.0 52 3-63 169-220 (434)
144 2ymu_A WD-40 repeat protein; u 85.1 1.1 3.6E-05 43.7 5.8 51 3-63 486-536 (577)
145 2oaj_A Protein SNI1; WD40 repe 84.8 1.1 3.9E-05 47.5 6.2 52 3-64 76-127 (902)
146 2j04_B YDR362CP, TAU91; beta p 84.7 0.7 2.4E-05 46.1 4.3 53 3-64 374-426 (524)
147 3zwl_B Eukaryotic translation 84.5 1.6 5.6E-05 39.0 6.4 50 7-65 296-345 (369)
148 2oaj_A Protein SNI1; WD40 repe 84.3 0.93 3.2E-05 48.2 5.3 61 3-65 593-660 (902)
149 4h5i_A Guanine nucleotide-exch 84.3 1.6 5.5E-05 40.6 6.4 49 4-62 155-203 (365)
150 3rkv_A Putative peptidylprolyl 84.2 2.1 7.1E-05 34.3 6.3 63 272-334 7-79 (162)
151 3ei3_B DNA damage-binding prot 84.2 1.7 5.8E-05 39.9 6.5 55 3-64 138-192 (383)
152 3edt_B KLC 2, kinesin light ch 83.5 4.1 0.00014 34.6 8.3 53 282-334 133-185 (283)
153 2xev_A YBGF; tetratricopeptide 82.9 3.1 0.00011 31.2 6.6 43 287-334 50-92 (129)
154 2w18_A PALB2, fancn, partner a 82.2 1.9 6.5E-05 41.1 6.0 57 2-65 153-211 (356)
155 2yhc_A BAMD, UPF0169 lipoprote 81.8 3.3 0.00011 35.3 7.0 40 288-332 53-92 (225)
156 3edt_B KLC 2, kinesin light ch 81.6 4.3 0.00015 34.5 7.7 53 282-334 91-143 (283)
157 2xev_A YBGF; tetratricopeptide 80.7 5.7 0.00019 29.7 7.4 46 279-329 79-124 (129)
158 4gco_A Protein STI-1; structur 80.0 4.6 0.00016 31.3 6.7 47 280-334 17-63 (126)
159 3qky_A Outer membrane assembly 79.9 3.1 0.00011 36.0 6.2 52 278-334 17-68 (261)
160 2v5f_A Prolyl 4-hydroxylase su 79.5 7.1 0.00024 29.2 7.5 56 278-334 7-62 (104)
161 2vdu_B TRNA (guanine-N(7)-)-me 79.4 1.8 6.1E-05 41.1 4.8 56 3-65 122-179 (450)
162 2v6y_A AAA family ATPase, P60 78.7 7.2 0.00025 28.9 7.0 60 272-331 7-68 (83)
163 3nf1_A KLC 1, kinesin light ch 78.6 7.8 0.00027 33.5 8.5 53 282-334 159-211 (311)
164 2dba_A Smooth muscle cell asso 77.2 7.7 0.00026 29.4 7.2 48 281-333 33-80 (148)
165 2l6j_A TPR repeat-containing p 77.1 7 0.00024 28.2 6.7 48 285-334 47-94 (111)
166 3upv_A Heat shock protein STI1 76.9 6.7 0.00023 29.5 6.7 41 286-334 48-88 (126)
167 2cpt_A SKD1 protein, vacuolar 76.3 8.2 0.00028 30.6 7.1 39 272-310 14-52 (117)
168 4gcn_A Protein STI-1; structur 75.6 9 0.00031 29.5 7.2 46 281-334 13-58 (127)
169 2j04_A TAU60, YPL007P, hypothe 74.7 5.4 0.00019 40.5 7.0 57 3-66 148-211 (588)
170 3nf1_A KLC 1, kinesin light ch 74.5 9 0.00031 33.1 7.7 55 280-334 31-85 (311)
171 3bws_A Protein LP49; two-domai 74.4 1.8 6.1E-05 40.3 3.2 57 4-64 142-198 (433)
172 2hr2_A Hypothetical protein; a 73.7 6.1 0.00021 33.1 6.0 62 273-334 8-73 (159)
173 3ma5_A Tetratricopeptide repea 73.5 6.7 0.00023 28.7 5.7 47 280-334 11-57 (100)
174 2w2u_A Hypothetical P60 katani 72.4 15 0.0005 27.2 7.2 60 271-330 14-75 (83)
175 2j04_A TAU60, YPL007P, hypothe 72.2 4.4 0.00015 41.2 5.6 56 3-65 104-159 (588)
176 2yhc_A BAMD, UPF0169 lipoprote 69.5 14 0.00048 31.1 7.7 50 281-335 152-201 (225)
177 2fbn_A 70 kDa peptidylprolyl i 69.5 18 0.0006 29.6 8.1 61 272-334 34-104 (198)
178 4gcn_A Protein STI-1; structur 68.8 20 0.00067 27.4 7.8 53 281-334 47-99 (127)
179 1l0q_A Surface layer protein; 68.5 6.5 0.00022 35.8 5.5 53 3-64 9-61 (391)
180 2kc7_A BFR218_protein; tetratr 67.5 9.8 0.00034 27.1 5.4 22 284-305 8-29 (99)
181 1elw_A TPR1-domain of HOP; HOP 66.7 16 0.00053 26.1 6.5 44 283-334 45-88 (118)
182 3sz7_A HSC70 cochaperone (SGT) 65.6 15 0.00053 29.0 6.7 40 287-334 56-95 (164)
183 3urz_A Uncharacterized protein 64.7 19 0.00066 29.9 7.5 31 276-306 4-34 (208)
184 3gyz_A Chaperone protein IPGC; 63.9 17 0.00059 29.3 6.7 23 282-304 42-64 (151)
185 3ro3_A PINS homolog, G-protein 63.5 29 0.00099 26.0 7.8 45 287-333 60-104 (164)
186 1wfd_A Hypothetical protein 15 63.4 32 0.0011 25.8 7.6 57 273-329 12-70 (93)
187 2v6x_A Vacuolar protein sortin 63.3 28 0.00095 25.5 7.2 58 273-330 10-69 (85)
188 3ro3_A PINS homolog, G-protein 63.1 27 0.00093 26.2 7.6 53 280-334 13-65 (164)
189 1na3_A Designed protein CTPR2; 62.5 25 0.00087 23.9 6.7 21 285-305 18-38 (91)
190 2xcb_A PCRH, regulatory protei 62.5 20 0.00069 27.6 6.7 13 322-334 90-102 (142)
191 1elr_A TPR2A-domain of HOP; HO 62.1 30 0.001 25.0 7.4 52 282-334 44-95 (131)
192 1ihg_A Cyclophilin 40; ppiase 62.0 18 0.00062 33.8 7.4 66 269-334 216-289 (370)
193 1a17_A Serine/threonine protei 61.9 27 0.00092 26.8 7.4 24 281-304 18-41 (166)
194 3k9i_A BH0479 protein; putativ 60.9 24 0.00081 26.1 6.7 46 281-334 32-77 (117)
195 3q49_B STIP1 homology and U bo 60.2 21 0.00073 26.6 6.4 41 286-334 53-93 (137)
196 3bws_A Protein LP49; two-domai 59.9 13 0.00043 34.4 5.8 53 4-64 189-241 (433)
197 3vtx_A MAMA; tetratricopeptide 59.7 18 0.00062 28.8 6.2 45 282-334 11-55 (184)
198 1elr_A TPR2A-domain of HOP; HO 59.4 27 0.00091 25.3 6.7 49 278-334 6-54 (131)
199 1hxi_A PEX5, peroxisome target 59.2 19 0.00064 27.3 5.9 39 287-333 62-100 (121)
200 1l0q_A Surface layer protein; 58.9 13 0.00045 33.7 5.7 52 4-64 52-103 (391)
201 2kat_A Uncharacterized protein 58.4 25 0.00084 25.8 6.3 44 283-334 26-69 (115)
202 2vyi_A SGTA protein; chaperone 58.0 30 0.001 24.9 6.7 39 287-333 57-95 (131)
203 2l6j_A TPR repeat-containing p 56.8 30 0.001 24.5 6.5 50 277-334 5-54 (111)
204 4a5x_A MITD1, MIT domain-conta 56.4 35 0.0012 25.3 6.6 56 275-330 15-72 (86)
205 1pft_A TFIIB, PFTFIIBN; N-term 56.0 5.8 0.0002 26.2 2.0 31 227-265 4-35 (50)
206 1vq8_Z 50S ribosomal protein L 55.9 3.3 0.00011 31.0 0.7 30 227-264 26-55 (83)
207 2vgx_A Chaperone SYCD; alterna 55.4 30 0.001 27.2 6.7 40 287-334 66-105 (148)
208 4gco_A Protein STI-1; structur 52.5 34 0.0012 26.1 6.4 45 282-334 53-97 (126)
209 1na3_A Designed protein CTPR2; 52.1 39 0.0013 22.9 6.2 44 281-332 48-91 (91)
210 2qfc_A PLCR protein; TPR, HTH, 52.0 33 0.0011 30.0 7.0 53 280-334 200-252 (293)
211 3vtx_A MAMA; tetratricopeptide 51.2 33 0.0011 27.2 6.4 45 282-334 113-157 (184)
212 2lni_A Stress-induced-phosphop 50.5 41 0.0014 24.4 6.4 44 282-333 90-133 (133)
213 3upv_A Heat shock protein STI1 50.3 40 0.0014 24.9 6.4 25 281-305 9-33 (126)
214 3gw4_A Uncharacterized protein 50.2 63 0.0022 25.6 8.1 53 281-334 71-123 (203)
215 2lni_A Stress-induced-phosphop 49.9 28 0.00094 25.4 5.3 46 281-334 55-100 (133)
216 3ro2_A PINS homolog, G-protein 49.8 55 0.0019 27.9 8.0 52 278-334 7-59 (338)
217 3ulq_A Response regulator aspa 49.5 48 0.0017 30.0 8.0 45 287-333 195-239 (383)
218 3rkv_A Putative peptidylprolyl 49.3 37 0.0013 26.5 6.3 46 281-334 68-113 (162)
219 3qky_A Outer membrane assembly 49.1 26 0.00087 29.9 5.7 49 279-332 55-103 (261)
220 4a1s_A PINS, partner of inscut 49.0 51 0.0017 29.8 8.0 55 275-334 47-102 (411)
221 2gw1_A Mitochondrial precursor 48.2 46 0.0016 30.9 7.7 30 276-305 6-35 (514)
222 3mv2_A Coatomer subunit alpha; 48.1 54 0.0019 30.6 7.9 53 276-328 114-166 (325)
223 4ga2_A E3 SUMO-protein ligase 47.8 34 0.0012 26.8 5.9 37 289-333 78-114 (150)
224 3ulq_A Response regulator aspa 47.8 58 0.002 29.5 8.2 51 282-334 109-159 (383)
225 3mkr_B Coatomer subunit alpha; 47.6 55 0.0019 30.5 7.8 50 278-327 104-153 (320)
226 3ga8_A HTH-type transcriptiona 47.5 16 0.00054 26.4 3.4 29 254-282 36-64 (78)
227 2rkl_A Vacuolar protein sortin 46.8 62 0.0021 21.9 5.9 38 271-308 15-52 (53)
228 2c2l_A CHIP, carboxy terminus 46.6 32 0.0011 30.3 6.1 14 320-333 74-87 (281)
229 3qou_A Protein YBBN; thioredox 46.4 51 0.0017 29.0 7.4 49 278-334 119-167 (287)
230 1na0_A Designed protein CTPR3; 45.8 58 0.002 23.0 6.5 42 285-334 52-93 (125)
231 1hz4_A MALT regulatory protein 45.3 63 0.0022 28.9 8.0 52 283-334 100-151 (373)
232 3gw4_A Uncharacterized protein 45.3 81 0.0028 24.9 8.0 52 281-334 31-82 (203)
233 2hr2_A Hypothetical protein; a 45.3 68 0.0023 26.5 7.4 57 278-334 59-118 (159)
234 3u3w_A Transcriptional activat 44.7 67 0.0023 27.9 7.9 51 283-334 162-212 (293)
235 3sf4_A G-protein-signaling mod 44.7 60 0.0021 28.9 7.7 50 280-334 13-63 (406)
236 3sz7_A HSC70 cochaperone (SGT) 44.7 49 0.0017 25.8 6.4 46 283-334 86-131 (164)
237 3gyz_A Chaperone protein IPGC; 44.6 52 0.0018 26.3 6.6 45 282-334 76-120 (151)
238 2dba_A Smooth muscle cell asso 44.2 85 0.0029 23.1 7.5 46 281-334 70-115 (148)
239 2vyi_A SGTA protein; chaperone 42.2 64 0.0022 23.0 6.4 45 282-334 86-130 (131)
240 1kt0_A FKBP51, 51 kDa FK506-bi 42.1 84 0.0029 29.9 8.7 62 273-334 265-333 (457)
241 3q15_A PSP28, response regulat 41.7 74 0.0025 28.8 7.9 45 287-333 193-237 (378)
242 1qqe_A Vesicular transport pro 41.6 85 0.0029 27.4 8.1 58 275-334 35-93 (292)
243 2kck_A TPR repeat; tetratricop 41.2 43 0.0015 23.3 5.1 48 281-334 45-93 (112)
244 3q49_B STIP1 homology and U bo 41.0 66 0.0023 23.7 6.4 22 284-305 17-38 (137)
245 1elw_A TPR1-domain of HOP; HOP 41.0 66 0.0023 22.4 6.2 16 288-303 84-99 (118)
246 3uq3_A Heat shock protein STI1 41.0 62 0.0021 26.5 6.7 50 276-334 5-54 (258)
247 1l8d_A DNA double-strand break 40.9 61 0.0021 24.7 6.1 20 255-274 48-67 (112)
248 2ojh_A Uncharacterized protein 40.7 46 0.0016 27.9 5.9 52 3-65 19-70 (297)
249 1wvo_A Sialic acid synthase; a 40.7 12 0.0004 27.5 1.7 19 166-184 8-26 (79)
250 4a1s_A PINS, partner of inscut 40.6 80 0.0027 28.4 7.9 48 285-334 272-319 (411)
251 1hxi_A PEX5, peroxisome target 40.5 49 0.0017 24.8 5.5 46 280-333 21-66 (121)
252 2a9u_A Ubiquitin carboxyl-term 40.2 62 0.0021 26.4 6.2 51 271-323 37-87 (144)
253 2fbn_A 70 kDa peptidylprolyl i 40.1 62 0.0021 26.1 6.5 23 283-305 95-117 (198)
254 3sf4_A G-protein-signaling mod 39.8 66 0.0023 28.6 7.2 51 284-336 315-365 (406)
255 3ieg_A DNAJ homolog subfamily 39.1 58 0.002 28.2 6.5 41 286-334 47-87 (359)
256 1dl6_A Transcription factor II 39.0 18 0.00063 24.8 2.4 34 224-265 7-41 (58)
257 3ro2_A PINS homolog, G-protein 38.9 87 0.003 26.5 7.6 43 289-333 96-138 (338)
258 1pc2_A Mitochondria fission pr 38.8 1.1E+02 0.0039 25.0 7.7 51 276-331 71-121 (152)
259 3ffl_A Anaphase-promoting comp 38.4 98 0.0034 26.0 7.3 54 281-334 68-138 (167)
260 3u3w_A Transcriptional activat 38.2 89 0.003 27.1 7.6 53 280-334 200-252 (293)
261 1p5q_A FKBP52, FK506-binding p 38.0 1.2E+02 0.0041 27.3 8.7 61 274-334 145-212 (336)
262 4i17_A Hypothetical protein; T 37.8 85 0.0029 25.7 7.1 40 287-334 53-92 (228)
263 2yrc_A Protein transport prote 37.6 15 0.0005 25.5 1.7 35 227-263 8-42 (59)
264 3uq3_A Heat shock protein STI1 37.5 1E+02 0.0035 25.2 7.6 53 281-334 43-95 (258)
265 4ga2_A E3 SUMO-protein ligase 36.3 78 0.0027 24.6 6.3 16 289-304 44-59 (150)
266 2gw1_A Mitochondrial precursor 36.2 90 0.0031 28.8 7.7 54 281-334 191-253 (514)
267 2vgx_A Chaperone SYCD; alterna 36.1 64 0.0022 25.1 5.7 44 283-331 96-139 (148)
268 2qfc_A PLCR protein; TPR, HTH, 36.0 86 0.0029 27.2 7.1 52 281-334 160-212 (293)
269 1na0_A Designed protein CTPR3; 35.6 97 0.0033 21.7 6.4 39 286-332 87-125 (125)
270 3q15_A PSP28, response regulat 35.5 64 0.0022 29.2 6.4 49 283-334 229-277 (378)
271 3ieg_A DNAJ homolog subfamily 35.2 1.2E+02 0.0041 26.1 8.0 48 282-334 240-288 (359)
272 1a17_A Serine/threonine protei 35.2 87 0.003 23.6 6.4 40 286-333 57-96 (166)
273 1fch_A Peroxisomal targeting s 34.9 66 0.0023 28.3 6.3 53 283-335 292-347 (368)
274 2xcb_A PCRH, regulatory protei 34.7 1E+02 0.0035 23.3 6.7 16 289-304 99-114 (142)
275 4a17_Y RPL37A, 60S ribosomal p 34.2 35 0.0012 26.4 3.5 11 254-264 54-64 (103)
276 2ifu_A Gamma-SNAP; membrane fu 33.8 1.2E+02 0.004 26.7 7.7 49 283-333 162-210 (307)
277 2rpa_A Katanin P60 ATPase-cont 33.5 35 0.0012 25.0 3.2 33 280-312 16-48 (78)
278 4b4t_Q 26S proteasome regulato 33.5 26 0.0009 32.1 3.3 57 281-337 9-74 (434)
279 2kck_A TPR repeat; tetratricop 33.4 81 0.0028 21.7 5.5 44 283-334 13-56 (112)
280 2y4t_A DNAJ homolog subfamily 33.3 1.1E+02 0.0039 27.7 7.8 47 283-334 264-311 (450)
281 2vq2_A PILW, putative fimbrial 32.9 1E+02 0.0035 24.5 6.7 18 287-304 124-141 (225)
282 3k9i_A BH0479 protein; putativ 32.7 96 0.0033 22.6 6.0 44 281-329 66-109 (117)
283 2fo7_A Synthetic consensus TPR 32.5 77 0.0026 22.5 5.3 41 286-334 45-85 (136)
284 2if4_A ATFKBP42; FKBP-like, al 32.3 78 0.0027 28.7 6.4 65 270-334 173-246 (338)
285 2ifu_A Gamma-SNAP; membrane fu 32.3 1.4E+02 0.0048 26.1 8.0 45 287-334 127-171 (307)
286 3j20_Y 30S ribosomal protein S 32.3 18 0.0006 24.2 1.4 28 228-263 19-46 (50)
287 1xnf_A Lipoprotein NLPI; TPR, 31.9 90 0.0031 25.9 6.4 17 288-304 89-105 (275)
288 2vq2_A PILW, putative fimbrial 31.7 1.4E+02 0.0047 23.7 7.3 41 286-334 52-93 (225)
289 1hh8_A P67PHOX, NCF-2, neutrop 31.3 1E+02 0.0034 24.7 6.4 46 281-334 42-87 (213)
290 4g1t_A Interferon-induced prot 31.3 51 0.0018 30.5 5.0 49 286-334 61-110 (472)
291 4gyw_A UDP-N-acetylglucosamine 30.3 75 0.0025 32.7 6.4 43 284-334 51-93 (723)
292 3j21_g 50S ribosomal protein L 30.1 25 0.00084 23.7 1.8 26 226-263 12-37 (51)
293 4eqf_A PEX5-related protein; a 30.0 76 0.0026 28.1 5.8 53 282-334 287-343 (365)
294 3cv0_A Peroxisome targeting si 29.7 1.5E+02 0.0052 25.1 7.7 53 283-335 247-303 (327)
295 2hf1_A Tetraacyldisaccharide-1 29.7 11 0.00037 27.0 -0.1 33 226-266 6-38 (68)
296 2pk7_A Uncharacterized protein 29.1 12 0.00041 26.8 0.1 33 226-266 6-38 (69)
297 1p5q_A FKBP52, FK506-binding p 29.1 1.6E+02 0.0054 26.5 7.9 23 283-305 203-225 (336)
298 3fp2_A TPR repeat-containing p 29.0 63 0.0022 30.3 5.3 50 276-333 25-74 (537)
299 3qt1_I DNA-directed RNA polyme 28.8 32 0.0011 27.8 2.6 33 229-265 25-57 (133)
300 2jrp_A Putative cytoplasmic pr 28.7 35 0.0012 25.2 2.6 15 254-268 51-65 (81)
301 2jr6_A UPF0434 protein NMA0874 28.5 13 0.00045 26.5 0.2 33 226-266 6-38 (68)
302 1hh8_A P67PHOX, NCF-2, neutrop 28.3 1.3E+02 0.0044 24.0 6.6 55 280-334 75-137 (213)
303 2k5c_A Uncharacterized protein 28.3 31 0.0011 25.6 2.2 19 254-272 8-26 (95)
304 1jmx_B Amine dehydrogenase; ox 28.2 85 0.0029 27.3 5.7 50 5-64 274-323 (349)
305 3urz_A Uncharacterized protein 28.2 1.3E+02 0.0045 24.5 6.7 44 283-334 61-104 (208)
306 6rxn_A Rubredoxin; electron tr 28.1 41 0.0014 22.0 2.6 35 227-263 3-39 (46)
307 4eqf_A PEX5-related protein; a 28.0 82 0.0028 27.9 5.6 40 287-334 110-149 (365)
308 2js4_A UPF0434 protein BB2007; 27.6 13 0.00046 26.6 0.1 33 226-266 6-38 (70)
309 2ho1_A Type 4 fimbrial biogene 27.5 1.2E+02 0.0041 24.9 6.3 17 288-304 117-133 (252)
310 1nir_A Nitrite reductase; hemo 27.4 97 0.0033 30.3 6.5 52 4-65 157-208 (543)
311 2r5s_A Uncharacterized protein 27.3 97 0.0033 24.4 5.5 49 280-334 112-160 (176)
312 2y4t_A DNAJ homolog subfamily 27.0 1.2E+02 0.0041 27.5 6.7 41 286-334 70-110 (450)
313 2kc7_A BFR218_protein; tetratr 26.9 1.5E+02 0.0052 20.3 6.0 32 281-317 40-71 (99)
314 1pby_B Quinohemoprotein amine 26.6 99 0.0034 26.5 5.8 50 5-64 259-308 (337)
315 2ho1_A Type 4 fimbrial biogene 26.6 82 0.0028 26.0 5.1 40 287-334 82-121 (252)
316 2r5s_A Uncharacterized protein 26.4 58 0.002 25.8 3.9 22 283-304 13-34 (176)
317 3hym_B Cell division cycle pro 26.3 1.2E+02 0.0042 25.8 6.3 52 283-334 200-252 (330)
318 2pl2_A Hypothetical conserved 26.3 84 0.0029 26.0 5.1 47 281-335 156-202 (217)
319 3qou_A Protein YBBN; thioredox 26.1 1.2E+02 0.004 26.5 6.3 49 280-334 223-271 (287)
320 1xip_A Nucleoporin NUP159; bet 25.9 57 0.0019 31.0 4.2 12 51-62 176-187 (388)
321 2k4x_A 30S ribosomal protein S 25.6 30 0.001 23.5 1.6 29 227-263 17-45 (55)
322 1qqe_A Vesicular transport pro 25.4 2.2E+02 0.0075 24.6 8.0 46 287-334 128-174 (292)
323 1ri6_A Putative isomerase YBHE 25.0 95 0.0032 26.8 5.4 51 3-63 12-66 (343)
324 3u4t_A TPR repeat-containing p 24.9 1.1E+02 0.0038 25.4 5.7 47 279-333 6-52 (272)
325 3as5_A MAMA; tetratricopeptide 24.8 2E+02 0.007 21.6 6.9 44 283-334 117-160 (186)
326 1wao_1 Serine/threonine protei 24.7 1E+02 0.0034 29.6 5.9 43 283-333 47-89 (477)
327 3as5_A MAMA; tetratricopeptide 24.4 1.7E+02 0.0058 22.1 6.3 40 287-334 87-126 (186)
328 2dl1_A Spartin; SPG20, MIT, st 24.2 1.8E+02 0.006 22.9 6.0 43 266-308 12-54 (116)
329 1ihg_A Cyclophilin 40; ppiase 24.1 1.1E+02 0.0038 28.2 5.9 45 282-334 279-323 (370)
330 3bee_A Putative YFRE protein; 23.9 1.5E+02 0.005 21.5 5.4 43 280-327 47-89 (93)
331 1pby_B Quinohemoprotein amine 23.7 1.4E+02 0.0047 25.6 6.2 56 3-64 8-63 (337)
332 2crb_A Nuclear receptor bindin 23.6 1.4E+02 0.0047 22.7 5.0 34 275-308 14-47 (97)
333 2lo3_A SAGA-associated factor 23.5 26 0.00089 22.6 0.9 19 255-273 18-36 (44)
334 1nir_A Nitrite reductase; hemo 23.4 1E+02 0.0036 30.1 5.8 55 5-64 345-400 (543)
335 2pl2_A Hypothetical conserved 23.4 1E+02 0.0035 25.4 5.1 19 287-305 50-68 (217)
336 4i17_A Hypothetical protein; T 23.3 1.6E+02 0.0056 23.9 6.3 42 286-335 86-127 (228)
337 3cv0_A Peroxisome targeting si 23.3 1.3E+02 0.0044 25.6 5.9 40 287-334 66-105 (327)
338 3h0g_I DNA-directed RNA polyme 23.2 33 0.0011 26.8 1.6 34 229-266 5-38 (113)
339 1fch_A Peroxisomal targeting s 23.2 1.1E+02 0.0036 26.9 5.4 40 287-334 109-148 (368)
340 2jny_A Uncharacterized BCR; st 23.0 37 0.0013 24.1 1.7 32 226-265 8-39 (67)
341 1qxf_A GR2, 30S ribosomal prot 22.9 38 0.0013 24.0 1.7 31 226-264 5-36 (66)
342 1xnf_A Lipoprotein NLPI; TPR, 22.3 1.4E+02 0.0049 24.6 5.9 18 287-304 122-139 (275)
343 3jyw_9 60S ribosomal protein L 22.2 60 0.002 23.4 2.7 11 254-264 44-54 (72)
344 2fo7_A Synthetic consensus TPR 22.2 2E+02 0.007 20.0 6.9 44 283-334 76-119 (136)
345 2q7f_A YRRB protein; TPR, prot 22.2 1.8E+02 0.0062 23.4 6.4 40 287-334 102-141 (243)
346 3fvz_A Peptidyl-glycine alpha- 22.1 1.7E+02 0.0057 25.9 6.6 52 6-63 268-319 (329)
347 1kt0_A FKBP51, 51 kDa FK506-bi 21.7 1.6E+02 0.0053 27.9 6.6 46 281-334 322-367 (457)
348 4gyw_A UDP-N-acetylglucosamine 21.6 1.3E+02 0.0046 30.8 6.4 40 287-334 122-161 (723)
349 3iqc_A FLIS, flagellar protein 21.5 3E+02 0.01 21.7 7.7 64 268-331 28-92 (131)
350 1nzn_A CGI-135 protein, fissio 21.4 3E+02 0.01 21.7 7.5 49 277-330 75-123 (126)
351 2jmo_A Parkin; IBR, E3 ligase, 21.1 56 0.0019 23.6 2.5 31 227-263 24-59 (80)
352 1jmx_B Amine dehydrogenase; ox 21.1 1.6E+02 0.0053 25.5 6.0 55 3-64 18-72 (349)
353 4abn_A Tetratricopeptide repea 21.0 1.4E+02 0.0047 28.4 6.0 47 280-334 106-153 (474)
354 1wao_1 Serine/threonine protei 20.8 26 0.00089 33.9 0.7 44 283-334 13-56 (477)
355 1dx8_A Rubredoxin; electron tr 20.6 61 0.0021 23.1 2.5 36 226-263 5-49 (70)
356 4b4t_Q 26S proteasome regulato 20.5 2.7E+02 0.0091 25.0 7.7 49 286-336 145-193 (434)
357 4abn_A Tetratricopeptide repea 20.4 2.4E+02 0.0082 26.6 7.6 40 290-334 235-274 (474)
358 2ksn_A Ubiquitin domain-contai 20.1 29 0.00098 28.2 0.7 50 278-340 60-109 (137)
359 2if4_A ATFKBP42; FKBP-like, al 20.1 1.3E+02 0.0045 27.1 5.4 48 279-334 233-280 (338)
No 1
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.97 E-value=4.6e-31 Score=266.34 Aligned_cols=264 Identities=16% Similarity=0.260 Sum_probs=194.4
Q ss_pred eeeeCCCCCCCCCCCCcccceecccc-CCCceEEeee------cC------CceEEEeCCccccchhhhh-hhhh-----
Q psy5736 19 LISWRPDRGSWARNSARCTALTLLNE-HDDSLLLTGY------DD------GSLSVYRNYASHEHRLVTS-FQAL----- 79 (346)
Q Consensus 19 ~~~~~~~~~~w~~~~~~~t~l~~ine-~~~~lll~g~------~d------G~vri~r~~~sh~~~Lv~a-~r~L----- 79 (346)
+|+-.||..+|+.|+.+|..++.+.. +.+.++++.+ .+ +....+..+++|..++... +..+
T Consensus 73 yCs~~Cq~~~w~~Hk~eC~~~~~~~~~p~~~~rl~lRiL~~~~~~~~~~~~~~~~~~~~L~sh~~~~~~~~~~~~~~~~~ 152 (490)
T 3n71_A 73 YCDRTCQKDAWLNHKNECAAIKKYGKVPNENIRLAARIMWRVEREGTGLTEGCLVSVDDLQNHVEHFGEEEQKELRVDVD 152 (490)
T ss_dssp ESSHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTTSSBCTTCSSBGGGSCCCGGGCCHHHHHHHHHHHH
T ss_pred cCCHHHhhhhhhHHHHHhHHHHhcCcCCCHHHHHHHHHHHHhhccCccCcchhhhHHHHHHhhhhhcCchHHHHHHHHHH
Confidence 44444666679999999999988765 3344433333 11 2233445666665444332 1111
Q ss_pred cccccccccccccCchhHHHHHHHHHHhhhhhccccccceehhccCCCccCCCccceeeeeeccccccCCCCCCCCeEEE
Q psy5736 80 TDTSFVNKSLSTVLNEDEALIAQILLKSLQVLQFNAHEVYETLFKTKHHFPNAKINYVGVGIYPTVSLFNHDCYPAVTRY 159 (346)
Q Consensus 80 ~~~~y~~~~~~~~~~~~~~~~~~~ll~~l~~l~~Naf~i~~~~~~~~~~~~~~~~~~~g~glyp~~s~~NHSC~PN~~~~ 159 (346)
.-..|+.... ..++. +.|+++++++++|+|+|.... ....+|.||||.+|+|||||+||+.+.
T Consensus 153 ~~~~~~~~~~-~~~~~------~~l~~~~~~~~~N~f~i~~~~----------g~~~~g~gl~p~~s~~NHSC~PN~~~~ 215 (490)
T 3n71_A 153 TFLQYWPPQS-QQFSM------QYISHIFGVINCNGFTLSDQR----------GLQAVGVGIFPNLGLVNHDCWPNCTVI 215 (490)
T ss_dssp HHHHHSCTTS-CCCCH------HHHHHHHHHHHTTEEEEECTT----------SCSEEEEEECTTGGGCEECSSCSEEEE
T ss_pred HHHHHccccc-cCCCH------HHHHHHHHHHhccCcccccCC----------CCccceEEEchhhhhcccCCCCCeeEE
Confidence 1112332111 11222 346788899999999998431 135689999999999999999999999
Q ss_pred EeCC-------------EEEEEEeeccCCCCceeecccccccCCCHHHHHHHHHhhCCCceecCCCCCCCccccccccCc
Q psy5736 160 FNGK-------------NIIVKALRPLKPKEVVAENYGLVFSRKHLIDRQKVLSARYWFECKCRACVENWPLMESLEKYP 226 (346)
Q Consensus 160 f~g~-------------~~~v~a~r~I~~Geel~~~Y~~~~~~~~~~~R~~~L~~~~~F~C~C~~C~~~~~~~~~~~~~~ 226 (346)
|+++ +++|+|+|||++||||||+|++ ..+++.+||+.|++.|+|+|.|++|.++.+.. . +
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~v~A~rdI~~GEEltisY~~--~~~~~~~R~~~L~~~~~F~C~C~~C~~~~~~~----~-~ 288 (490)
T 3n71_A 216 FNNGNHEAVKSMFHTQMRIELRALGKISEGEELTVSYID--FLHLSEERRRQLKKQYYFDCSCEHCQKGLKDD----L-F 288 (490)
T ss_dssp EECCCCSSSCCCGGGSCEEEEEESSCBCTTCBCEECSSC--SCSCHHHHHHHHHHHHSSCCCCHHHHHTTTHH----H-H
T ss_pred ecCCccccccccccccceEEEEECCCCCCCCEEEEeecC--CCCCHHHHHHHHHCCCCeEeeCCCCCCCCccc----c-h
Confidence 9986 9999999999999999999998 56899999999999999999999999876321 1 1
Q ss_pred cccccCCcCcCCcccccccCCcccccCcccccccCCcCChHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Q psy5736 227 IRIRCSNDNCGQIIATVKKLEPSAKKVEKKCESCNSTSDLTEIKTKLSELNEMFYRGIEQMNTSCFREAVESLTKFSDQI 306 (346)
Q Consensus 227 ~~~~C~~~~C~g~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~ai~~l~~~l~~~ 306 (346)
.++.+ | ...+.+.+...++.+...++++.....+|++++|+..+++.|+..
T Consensus 289 ~~~~~----~-------------------------~~~s~e~v~~~l~~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~ 339 (490)
T 3n71_A 289 LAAKE----D-------------------------PKPSQEVVKEMIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQ 339 (490)
T ss_dssp TCBCS----S-------------------------SCCCHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred hhccc----C-------------------------CCCCHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 11111 0 112345667777788888888888888999999999999999999
Q ss_pred hcccCCCcHhHHHHHHHHHHHHHHhCCcc
Q psy5736 307 HELVVPPYKLASLAHEALRNCWSLAGNKW 335 (346)
Q Consensus 307 ~~~l~p~h~~~~~~~~~L~~~y~~~G~~~ 335 (346)
.++|++.|+.+..+...|+..|...|+.-
T Consensus 340 ~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~ 368 (490)
T 3n71_A 340 EPVFADTNLYVLRLLSIASEVLSYLQAYE 368 (490)
T ss_dssp TTTBCTTSHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHhcCCCCHHHHHHHHHHHHHHHHhcCHH
Confidence 99999999999999999999999999863
No 2
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=99.97 E-value=4.3e-31 Score=262.81 Aligned_cols=263 Identities=17% Similarity=0.254 Sum_probs=186.2
Q ss_pred eeeeeCCCCCCCCCCCCcccceecccc---CCCceEEeee------------cCCceEEEeCCccccchhhhh-------
Q psy5736 18 RLISWRPDRGSWARNSARCTALTLLNE---HDDSLLLTGY------------DDGSLSVYRNYASHEHRLVTS------- 75 (346)
Q Consensus 18 ~~~~~~~~~~~w~~~~~~~t~l~~ine---~~~~lll~g~------------~dG~vri~r~~~sh~~~Lv~a------- 75 (346)
.+|+-.+|..+|+.|+.+|..++.+.+ +++.+++..+ .+.....+..+++|..++...
T Consensus 72 ~yCs~~Cq~~~w~~Hk~eC~~l~~~~~~~~p~~~~rl~~Ril~~~~~~~~~~~~~~~~~~~~L~sh~~~~~~~~~~~~~~ 151 (433)
T 3qww_A 72 FYCDVECQKEDWPLHKLECSSMVVLGENWNPSETVRLTARILAKQKIHPERTPSEKLLAVREFESHLDKLDNEKKDLIQS 151 (433)
T ss_dssp EESSHHHHHHHHHHHTTTHHHHHHSSTTCCCCHHHHHHHHHHHHHHHCCSCCGGGSSCCGGGCCCCGGGCCHHHHHHHHH
T ss_pred eecChhhhhhhhhHHHHHHHHHHHhCccCCCcHHHHHHHHHHHHhhhccccCchhhhhhHHHHHhhhhccChHHHHHHHH
Confidence 344444566669999999999998864 2333433333 111222344566664443221
Q ss_pred -hhhhcccccccccccccCchhHHHHHHHHHHhhhhhccccccceehhccCCCccCCCccceeeeeeccccccCCCCCCC
Q psy5736 76 -FQALTDTSFVNKSLSTVLNEDEALIAQILLKSLQVLQFNAHEVYETLFKTKHHFPNAKINYVGVGIYPTVSLFNHDCYP 154 (346)
Q Consensus 76 -~r~L~~~~y~~~~~~~~~~~~~~~~~~~ll~~l~~l~~Naf~i~~~~~~~~~~~~~~~~~~~g~glyp~~s~~NHSC~P 154 (346)
+..| ..|+.... ..++ .+.|+++++++++|+|+|... +...+|.||||.+|+|||||.|
T Consensus 152 ~~~~l--~~~~~~~~-~~~~------~~~i~~~~~~~~~N~f~i~~~-----------~~~~~g~gl~p~~s~~NHsC~P 211 (433)
T 3qww_A 152 DIAAL--HQFYSKYL-EFPD------HSSLVVLFAQVNCNGFTIEDE-----------ELSHLGSAIFPDVALMNHSCCP 211 (433)
T ss_dssp HHHHH--HHHHTTTC-CCCC------HHHHHHHHHHHHHHCEEEECT-----------TCCEEEEEECTTGGGSEECSSC
T ss_pred HHHHH--HHHHhccc-CCCC------HHHHHHHHHHHcCCceecccC-----------CccceeEEecccccccCCCCCC
Confidence 1111 12222111 1122 234678889999999999743 2356899999999999999999
Q ss_pred CeEEEEeCCEEEEEEeeccCCCCceeecccccccCCCHHHHHHHHHhhCCCceecCCCCCCCccccccccCccccccCCc
Q psy5736 155 AVTRYFNGKNIIVKALRPLKPKEVVAENYGLVFSRKHLIDRQKVLSARYWFECKCRACVENWPLMESLEKYPIRIRCSND 234 (346)
Q Consensus 155 N~~~~f~g~~~~v~a~r~I~~Geel~~~Y~~~~~~~~~~~R~~~L~~~~~F~C~C~~C~~~~~~~~~~~~~~~~~~C~~~ 234 (346)
|+.+.|+|++++|+|+|||++||||||+|++ ..+++.+||+.|++.|+|.|.|.+|.++.+. . .+|.
T Consensus 212 N~~~~~~~~~~~~~a~r~I~~Geel~i~Y~~--~~~~~~~R~~~L~~~~~F~C~C~~C~~~~~d--~-------~~~~-- 278 (433)
T 3qww_A 212 NVIVTYKGTLAEVRAVQEIHPGDEVFTSYID--LLYPTEDRNDRLRDSYFFTCECRECTTKDKD--K-------AKVE-- 278 (433)
T ss_dssp SEEEEEETTEEEEEESSCBCTTCEEEECCSC--TTSCHHHHHHHHHHHHSCCCCSHHHHHCTTH--H-------HHTC--
T ss_pred CceEEEcCCEEEEEeccCcCCCCEEEEeecC--CcCCHHHHHHHHhCcCCEEeECCCCCCCCcc--h-------hhhh--
Confidence 9999999999999999999999999999998 4689999999999999999999999987632 1 1222
Q ss_pred CcCCcccccccCCcccccCcccccccCCcCChHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhcccCCCc
Q psy5736 235 NCGQIIATVKKLEPSAKKVEKKCESCNSTSDLTEIKTKLSELNEMFYRGIEQMNTSCFREAVESLTKFSDQIHELVVPPY 314 (346)
Q Consensus 235 ~C~g~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h 314 (346)
.|.-. . ....+.+...+..+.+.+++..+.-..|++++|+..+++.|+...++|+|.|
T Consensus 279 ~~~~~---~-------------------~~~~e~v~~~~~~~~~~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~H 336 (433)
T 3qww_A 279 VRKLS---S-------------------PPQAEAIRDMVRYARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSN 336 (433)
T ss_dssp BCCCS---S-------------------CCCHHHHHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTS
T ss_pred hhhcC---C-------------------CccHHHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHhhCccChhc
Confidence 11100 0 0112334444444555555544445678899999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHhCCcc
Q psy5736 315 KLASLAHEALRNCWSLAGNKW 335 (346)
Q Consensus 315 ~~~~~~~~~L~~~y~~~G~~~ 335 (346)
+.+..+...|+..|...|+.-
T Consensus 337 p~~a~~~~nLa~~y~~~g~~~ 357 (433)
T 3qww_A 337 VYMLHMMYQAMGVCLYMQDWE 357 (433)
T ss_dssp HHHHHHHHHHHHHHHHTTCHH
T ss_pred hHHHHHHHHHHHHHHhhcCHH
Confidence 999999999999999999764
No 3
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=99.96 E-value=2e-29 Score=250.52 Aligned_cols=255 Identities=20% Similarity=0.292 Sum_probs=178.1
Q ss_pred eeeeeCCCCCCCCCCCCcccceecccc--CCCceEEeee-----------cCCceEEEeCCccccchhhhh----hhhh-
Q psy5736 18 RLISWRPDRGSWARNSARCTALTLLNE--HDDSLLLTGY-----------DDGSLSVYRNYASHEHRLVTS----FQAL- 79 (346)
Q Consensus 18 ~~~~~~~~~~~w~~~~~~~t~l~~ine--~~~~lll~g~-----------~dG~vri~r~~~sh~~~Lv~a----~r~L- 79 (346)
.+|+-.+|..+|+.|+.+|..++.... ..+.+++.++ ..+.+..+.++++|..++... |+.+
T Consensus 70 ~yCs~~Cq~~~w~~Hk~eC~~~~~~~~~~~~~~~rl~~rill~~~~~~~~~~~~~~~~~~L~sh~~~~~~~~~~~~~~~~ 149 (429)
T 3qwp_A 70 KYCSAKCQKKAWPDHKRECKCLKSCKPRYPPDSVRLLGRVVFKLMDGAPSESEKLYSFYDLESNINKLTEDRKEGLRQLV 149 (429)
T ss_dssp EESSHHHHHHTHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHSCCCGGGSSSCGGGCCCCGGGCCHHHHHHHHHHH
T ss_pred ccCChhhhhhhhhhhHHhhhhHHhcCccCCChHHHHHHHHHHHHhcCCCCchhhhhhHHHHhhChhhcChhHHHHHHHHH
Confidence 445445677779999999999887743 2333333222 111122345566665443321 2111
Q ss_pred -cccccccccc-c--ccCchhHHHHHHHHHHhhhhhccccccceehhccCCCccCCCccceeeeeeccccccCCCCCCCC
Q psy5736 80 -TDTSFVNKSL-S--TVLNEDEALIAQILLKSLQVLQFNAHEVYETLFKTKHHFPNAKINYVGVGIYPTVSLFNHDCYPA 155 (346)
Q Consensus 80 -~~~~y~~~~~-~--~~~~~~~~~~~~~ll~~l~~l~~Naf~i~~~~~~~~~~~~~~~~~~~g~glyp~~s~~NHSC~PN 155 (346)
....|+.... . ..++ .+.++++++++.+|+|+|... +...+|.|+||.+|+|||||.||
T Consensus 150 ~~~~~~l~~~~~~~~~~~~------~~~~~~~~~~~~~N~f~i~~~-----------~~~~~g~~l~~~~s~~NHsC~PN 212 (429)
T 3qwp_A 150 MTFQHFMREEIQDASQLPP------AFDLFEAFAKVICNSFTICNA-----------EMQEVGVGLYPSISLLNHSCDPN 212 (429)
T ss_dssp HHHHHHTTTTCCSGGGSCT------TCCHHHHHHHHHHHCEEEECT-----------TSCEEEEEECTTGGGCEECSSCS
T ss_pred HHHHHHHhhhcCccccCCC------HHHHHHHHHHHHhcCcccccc-----------ccccceEEEchhhHhhCcCCCCC
Confidence 0112222110 0 0011 124678899999999999743 23568999999999999999999
Q ss_pred eEEEEeCCEEEEEEeeccCCCCceeecccccccCCCHHHHHHHHHhhCCCceecCCCCCCCccccccccCccccccCCcC
Q psy5736 156 VTRYFNGKNIIVKALRPLKPKEVVAENYGLVFSRKHLIDRQKVLSARYWFECKCRACVENWPLMESLEKYPIRIRCSNDN 235 (346)
Q Consensus 156 ~~~~f~g~~~~v~a~r~I~~Geel~~~Y~~~~~~~~~~~R~~~L~~~~~F~C~C~~C~~~~~~~~~~~~~~~~~~C~~~~ 235 (346)
+.+.|+|++++|+|+|||++|||||++|++ ..+++.+||+.|+++|+|.|.|++|.++.... .
T Consensus 213 ~~~~~~~~~~~~~a~r~I~~GeEl~isY~~--~~~~~~~R~~~L~~~~~F~C~C~~C~~~~~~~----~----------- 275 (429)
T 3qwp_A 213 CSIVFNGPHLLLRAVRDIEVGEELTICYLD--MLMTSEERRKQLRDQYCFECDCFRCQTQDKDA----D----------- 275 (429)
T ss_dssp EEEEEETTEEEEEECSCBCTTCEEEECCSC--SSCCHHHHHHHHHHHHCCCCCSHHHHHTTTHH----H-----------
T ss_pred eEEEEeCCEEEEEEeeeECCCCEEEEEecC--CCCCHHHHHHHHhccCCeEeeCCCCCCCcccc----c-----------
Confidence 999999999999999999999999999998 57899999999999999999999999876311 0
Q ss_pred cCCcccccccCCcccccCcccccccCCcCChHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhcccCCCcH
Q psy5736 236 CGQIIATVKKLEPSAKKVEKKCESCNSTSDLTEIKTKLSELNEMFYRGIEQMNTSCFREAVESLTKFSDQIHELVVPPYK 315 (346)
Q Consensus 236 C~g~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~ 315 (346)
+....+ ..|.| ....+ +...+...+|++++|++.+++.|+.+.++|+|.|+
T Consensus 276 ----~~~~~~-------~~~~~-----------~~~ll-------~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~ 326 (429)
T 3qwp_A 276 ----MLTGDE-------QVWKE-----------VQESL-------KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINI 326 (429)
T ss_dssp ----HTCSCH-------HHHHH-----------HHHHH-------HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSH
T ss_pred ----ccccch-------hhhHH-----------HHHHH-------HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccch
Confidence 000000 01322 11122 22222335688999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhCCcc
Q psy5736 316 LASLAHEALRNCWSLAGNKW 335 (346)
Q Consensus 316 ~~~~~~~~L~~~y~~~G~~~ 335 (346)
.+..+...|+..|...|+.-
T Consensus 327 ~~~~~~~~L~~~y~~~g~~~ 346 (429)
T 3qwp_A 327 YQLKVLDCAMDACINLGLLE 346 (429)
T ss_dssp HHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhhccHH
Confidence 99999999999999999753
No 4
>3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor, variegation 4-20 homolog 2, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.80A {Homo sapiens}
Probab=99.50 E-value=8.1e-15 Score=134.65 Aligned_cols=68 Identities=26% Similarity=0.448 Sum_probs=58.1
Q ss_pred eeeeeccc-cccCCCCCCCCeEEEEe-CCEEEEEEeeccCCCCceeecccccccCCCHHHHHHHHHhhCCCceecCCCCC
Q psy5736 137 VGVGIYPT-VSLFNHDCYPAVTRYFN-GKNIIVKALRPLKPKEVVAENYGLVFSRKHLIDRQKVLSARYWFECKCRACVE 214 (346)
Q Consensus 137 ~g~glyp~-~s~~NHSC~PN~~~~f~-g~~~~v~a~r~I~~Geel~~~Y~~~~~~~~~~~R~~~L~~~~~F~C~C~~C~~ 214 (346)
...++|+. ++++||||.||+...+. ++++.|+|+|||++|||||++|++.+ +. .+.|.|.|.+|.+
T Consensus 168 ~~~~l~~~~ar~iNHSC~PN~~~~~~~~~~i~v~A~rdI~~GEElt~~Y~~~~--~~----------~~~f~C~C~~C~~ 235 (247)
T 3rq4_A 168 RSAQLWLGPAAFINHDCKPNCKFVPADGNAACVKVLRDIEPGDEVTCFYGEGF--FG----------EKNEHCECHTCER 235 (247)
T ss_dssp TEEEEEESGGGGCEECSSCSEEEEEETTTEEEEEESSCBCTTCBCEECCCTTS--SS----------GGGTTCCCHHHHH
T ss_pred ccceeecchhhhcCCCCCCCEEEEEeCCCEEEEEECCcCCCCCEEEEecCchh--cC----------CCCCEEECCCCCC
Confidence 36788887 88999999999987765 68999999999999999999999853 32 4689999999987
Q ss_pred CC
Q psy5736 215 NW 216 (346)
Q Consensus 215 ~~ 216 (346)
+.
T Consensus 236 ~~ 237 (247)
T 3rq4_A 236 KG 237 (247)
T ss_dssp HT
T ss_pred CC
Confidence 54
No 5
>3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone methyltransferase, transcription regulat histone lysine, SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo sapiens}
Probab=99.38 E-value=1.4e-13 Score=127.87 Aligned_cols=61 Identities=31% Similarity=0.518 Sum_probs=51.9
Q ss_pred ccccccCCCCCCCCeEEEEeCC-EEEEEEeeccCCCCceeecccccccCCCHHHHHHHHHhhCCCceecCCCCC
Q psy5736 142 YPTVSLFNHDCYPAVTRYFNGK-NIIVKALRPLKPKEVVAENYGLVFSRKHLIDRQKVLSARYWFECKCRACVE 214 (346)
Q Consensus 142 yp~~s~~NHSC~PN~~~~f~g~-~~~v~a~r~I~~Geel~~~Y~~~~~~~~~~~R~~~L~~~~~F~C~C~~C~~ 214 (346)
...++++||||.||+.+.+.|. ++.++|+|||++|||||++|++.+ +. .+.|.|.|.+|.-
T Consensus 203 g~~arfiNHSC~PN~~~~~~~~~~i~i~A~RdI~~GEELt~~Y~~~~--~~----------~~~f~C~C~~c~c 264 (273)
T 3s8p_A 203 LGPAAFINHDCRPNCKFVSTGRDTACVKALRDIEPGEEISCYYGDGF--FG----------ENNEFCECYTCER 264 (273)
T ss_dssp ESGGGGCEECSSCSEEEEEEETTEEEEEESSCBCTTCBCEECCCTTT--TS----------GGGTTCCCHHHHH
T ss_pred cchHHhhCCCCCCCeEEEEcCCCEEEEEECceeCCCCEEEEecCchh--cC----------CCCeEEECCCCcC
Confidence 3456899999999999988875 999999999999999999999842 32 3579999999964
No 6
>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A*
Probab=99.29 E-value=8.3e-13 Score=108.24 Aligned_cols=51 Identities=18% Similarity=0.273 Sum_probs=46.1
Q ss_pred eeeeeccccccCCCCCCCCeEEEEe--CCEEEEEEeeccCCCCceeecccccc
Q psy5736 137 VGVGIYPTVSLFNHDCYPAVTRYFN--GKNIIVKALRPLKPKEVVAENYGLVF 187 (346)
Q Consensus 137 ~g~glyp~~s~~NHSC~PN~~~~f~--g~~~~v~a~r~I~~Geel~~~Y~~~~ 187 (346)
.+..++|.++++||||.||+...+. +.++.++|+|||++|||||++|++.+
T Consensus 57 d~~~~~~~~~~~NHsc~pN~~~~~~~~~~~~~~~A~rdI~~GeElt~~Y~~~~ 109 (119)
T 1n3j_A 57 MSAMALGFGAIFNHSKDPNARHELTAGLKRMRIFTIKPIAIGEEITISYGDDY 109 (119)
T ss_dssp EEEEESSSHHHHHSCSSCCCEEEECSSSSCEEEEECSCBCSSEEECCCCCCCC
T ss_pred ccccccCceeeeccCCCCCeeEEEECCCeEEEEEEccccCCCCEEEEecCchh
Confidence 3677899999999999999999987 45899999999999999999999853
No 7
>2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A*
Probab=99.13 E-value=3.9e-11 Score=106.35 Aligned_cols=56 Identities=23% Similarity=0.509 Sum_probs=42.5
Q ss_pred ccccCCCCCCCCeEEEE---eC-CEEEEEEeeccCCCCceeecccccccCCCHHHHHHHHHhhCCCceecC
Q psy5736 144 TVSLFNHDCYPAVTRYF---NG-KNIIVKALRPLKPKEVVAENYGLVFSRKHLIDRQKVLSARYWFECKCR 210 (346)
Q Consensus 144 ~~s~~NHSC~PN~~~~f---~g-~~~~v~a~r~I~~Geel~~~Y~~~~~~~~~~~R~~~L~~~~~F~C~C~ 210 (346)
.++++||||.||+...+ +| .++.++|+|+|++|||||++|+..+ +.. .+.|.|.|.
T Consensus 124 ~arfiNHSC~PN~~~~~~~~~g~~~i~i~A~rdI~~GEELt~dY~~~~--~~~---------~~~~~C~Cg 183 (192)
T 2w5y_A 124 AARFINHSCEPNCYSRVINIDGQKHIVIFAMRKIYRGEELTYDYKFPI--EDA---------SNKLPCNCG 183 (192)
T ss_dssp GGGGCEECSSCSEEEEEEEETTEEEEEEEESSCBCTTCEEEECCCC------------------CCBCCCC
T ss_pred hhHhhccCCCCCEEEEEEEECCcEEEEEEECcccCCCCEEEEEcCCch--hcC---------CCCceeECC
Confidence 46789999999999753 23 4799999999999999999999742 221 368999993
No 8
>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 4ij8_A* 2bqz_A*
Probab=98.99 E-value=8e-11 Score=101.65 Aligned_cols=43 Identities=21% Similarity=0.190 Sum_probs=36.4
Q ss_pred ccccCCCCCCCCeEEEE--eC--CEEEEEEeeccCCCCceeeccccc
Q psy5736 144 TVSLFNHDCYPAVTRYF--NG--KNIIVKALRPLKPKEVVAENYGLV 186 (346)
Q Consensus 144 ~~s~~NHSC~PN~~~~f--~g--~~~~v~a~r~I~~Geel~~~Y~~~ 186 (346)
.+.++||||.|||.... .+ .++.++|+|||++|||||++|++.
T Consensus 107 ~aRfiNHSC~PN~~~~~~~~~~~~~i~~~A~rdI~~GEELt~dY~~~ 153 (166)
T 3f9x_A 107 LGRLINHSKCGNCQTKLHDIDGVPHLILIASRDIAAGEELLFDYGDR 153 (166)
T ss_dssp SGGGCEECTTCSEEEEEEEETTEEEEEEEESSCBCTTCBCEECCCCC
T ss_pred hhheeecCCCCCeeEEEEEECCeeEEEEEECCcCCCCCEEEEEcCCC
Confidence 35788999999987653 33 479999999999999999999984
No 9
>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens}
Probab=98.96 E-value=3.1e-10 Score=102.78 Aligned_cols=43 Identities=19% Similarity=0.279 Sum_probs=36.7
Q ss_pred ccccCCCCCCCCeEEEE--eC--CEEEEEEeeccCCCCceeeccccc
Q psy5736 144 TVSLFNHDCYPAVTRYF--NG--KNIIVKALRPLKPKEVVAENYGLV 186 (346)
Q Consensus 144 ~~s~~NHSC~PN~~~~f--~g--~~~~v~a~r~I~~Geel~~~Y~~~ 186 (346)
.+.++||||.||+.... .+ .++.|+|+|||++|||||++|+..
T Consensus 146 ~aRfiNHSC~PN~~~~~~~~~~~~~i~~~A~RdI~~GEELT~dY~~~ 192 (222)
T 3ope_A 146 EARFINHSCDPNCEMQKWSVNGVYRIGLYALKDMPAGTELTYDYNFH 192 (222)
T ss_dssp GGGGCEECSSCSEEEEEEEETTEEEEEEEESSCBCTTCBCEECTTSS
T ss_pred cceeeccCCCCCeEeEEEEECCeEEEEEEECCccCCCCEEEEECCCc
Confidence 35578999999998765 33 479999999999999999999974
No 10
>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens}
Probab=98.96 E-value=3.4e-10 Score=103.22 Aligned_cols=55 Identities=24% Similarity=0.284 Sum_probs=43.5
Q ss_pred ccccCCCCCCCCeEEEE--eC--CEEEEEEeeccCCCCceeecccccccCCCHHHHHHHHHhhCCCceecC
Q psy5736 144 TVSLFNHDCYPAVTRYF--NG--KNIIVKALRPLKPKEVVAENYGLVFSRKHLIDRQKVLSARYWFECKCR 210 (346)
Q Consensus 144 ~~s~~NHSC~PN~~~~f--~g--~~~~v~a~r~I~~Geel~~~Y~~~~~~~~~~~R~~~L~~~~~F~C~C~ 210 (346)
.+.++||||.||+.... .+ .++.|+|+|||++|||||++|+..+ +. ...|.|.|.
T Consensus 165 ~aRfiNHSC~PN~~~~~~~~~~~~~i~~~A~RdI~~GEELT~dY~~~~--~~----------~~~~~C~CG 223 (232)
T 3ooi_A 165 YARFMNHCCQPNCETQKWSVNGDTRVGLFALSDIKAGTELTFNYNLEC--LG----------NGKTVCKCG 223 (232)
T ss_dssp GGGGCEECSSCSEEEEEEEETTEEEEEEEESSCBCTTCBCEECCTTCS--TT----------CTTCBCCCC
T ss_pred ccccccccCCCCeEEEEEEECCceEEEEEECCccCCCCEEEEECCCCc--CC----------CCCcEeECC
Confidence 46688999999998754 22 5899999999999999999998743 21 245888884
No 11
>3h6l_A Histone-lysine N-methyltransferase SETD2; SET domain-containing protein 2, S-adenos methionine, structural genomics, structural genomics consor SGC; HET: SAM; 1.99A {Homo sapiens} PDB: 4fmu_A* 4h12_A*
Probab=98.85 E-value=1.5e-09 Score=101.46 Aligned_cols=43 Identities=12% Similarity=0.167 Sum_probs=35.5
Q ss_pred ccccCCCCCCCCeEEEE--eC--CEEEEEEeeccCCCCceeeccccc
Q psy5736 144 TVSLFNHDCYPAVTRYF--NG--KNIIVKALRPLKPKEVVAENYGLV 186 (346)
Q Consensus 144 ~~s~~NHSC~PN~~~~f--~g--~~~~v~a~r~I~~Geel~~~Y~~~ 186 (346)
.+.++||||.||+.... .+ .++.|+|+|||++|||||++|+..
T Consensus 190 ~aRFiNHSC~PN~~~~~~~v~g~~ri~~fA~RdI~~GEELT~dY~~~ 236 (278)
T 3h6l_A 190 CSRFMNHSCEPNCETQKWTVNGQLRVGFFTTKLVPSGSELTFDYQFQ 236 (278)
T ss_dssp GGGGCEECSSCSEEEEEEEETTEEEEEEEESSCBCTTCBCEECCTTT
T ss_pred hhhhcccCCCCCceeEEEEeCCceEEEEEECCccCCCCEEEEecCCC
Confidence 35678999999976543 34 378999999999999999999863
No 12
>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 4h4h_A* 4i51_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A*
Probab=98.82 E-value=1e-09 Score=103.15 Aligned_cols=62 Identities=24% Similarity=0.494 Sum_probs=44.7
Q ss_pred eeeccc-cccCCCCCCCCeEEE--EeC------CEEEEEEeeccCCCCceeecccccccCCCHHHHHHHHHhhCCCceec
Q psy5736 139 VGIYPT-VSLFNHDCYPAVTRY--FNG------KNIIVKALRPLKPKEVVAENYGLVFSRKHLIDRQKVLSARYWFECKC 209 (346)
Q Consensus 139 ~glyp~-~s~~NHSC~PN~~~~--f~g------~~~~v~a~r~I~~Geel~~~Y~~~~~~~~~~~R~~~L~~~~~F~C~C 209 (346)
...+.. +.++||||.||+... +.. .++.++|+|+|++|||||++|++.+ +.. ....|.|.|
T Consensus 210 a~~~GN~aRFiNHSC~PN~~~~~v~~~~~d~~~~~i~~~A~RdI~~GEELT~dYg~~~--~~~--------~~~~~~C~C 279 (287)
T 3hna_A 210 ARFYGNVSRFINHHCEPNLVPVRVFMAHQDLRFPRIAFFSTRLIEAGEQLGFDYGERF--WDI--------KGKLFSCRC 279 (287)
T ss_dssp EEEEECGGGGCEECSSCSEEEEEEESSCCCTTCCEEEEEESSCBCTTCBCEECCCHHH--HHH--------HTTTCCCCC
T ss_pred ccccCCchheeeecCCCCceeEEEEEecCCCCceeEEEEEcceeCCCCeEEEeCCCcc--ccc--------CCCcCEeeC
Confidence 334443 446799999999853 321 3899999999999999999998632 111 134799988
Q ss_pred C
Q psy5736 210 R 210 (346)
Q Consensus 210 ~ 210 (346)
.
T Consensus 280 G 280 (287)
T 3hna_A 280 G 280 (287)
T ss_dssp C
T ss_pred C
Confidence 4
No 13
>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A*
Probab=98.82 E-value=1.7e-09 Score=102.37 Aligned_cols=64 Identities=17% Similarity=0.344 Sum_probs=36.0
Q ss_pred ccccCCCCCCCCeEEEEe-C-------CEEEEEEeeccCCCCceeecccccccCCCHH-HHHHHHHhhCCCceec
Q psy5736 144 TVSLFNHDCYPAVTRYFN-G-------KNIIVKALRPLKPKEVVAENYGLVFSRKHLI-DRQKVLSARYWFECKC 209 (346)
Q Consensus 144 ~~s~~NHSC~PN~~~~f~-g-------~~~~v~a~r~I~~Geel~~~Y~~~~~~~~~~-~R~~~L~~~~~F~C~C 209 (346)
.+.++||||.||+..... + .++.++|+|+|++|||||++|++.+ +... +.....+....|.|.|
T Consensus 220 ~arfiNHSC~PN~~~~~~~~~~~~~~~~~i~~~A~rdI~~GeELt~dY~~~~--~~~~~~~~~~~k~~~~~~C~C 292 (302)
T 1ml9_A 220 PTRFINHSCDPNMAIFARVGDHADKHIHDLALFAIKDIPKGTELTFDYVNGL--TGLESDAHDPSKISEMTKCLC 292 (302)
T ss_dssp GGGGCEECSSCSEEEEEEESSGGGGGGCEEEEEESSCBCTTCEEEECTTC-------------------------
T ss_pred HHHhcccCCCCCeeEEEEEeccCCCCceEEEEEECCCcCCCCEEEEEECCCc--cccccccccccccCCCcEeeC
Confidence 466899999999986532 2 3799999999999999999998743 2221 1111122234578887
No 14
>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens}
Probab=98.73 E-value=7.7e-09 Score=97.67 Aligned_cols=43 Identities=21% Similarity=0.431 Sum_probs=36.9
Q ss_pred ccccCCCCCCCCeEEE--EeC------CEEEEEEeeccCCCCceeeccccc
Q psy5736 144 TVSLFNHDCYPAVTRY--FNG------KNIIVKALRPLKPKEVVAENYGLV 186 (346)
Q Consensus 144 ~~s~~NHSC~PN~~~~--f~g------~~~~v~a~r~I~~Geel~~~Y~~~ 186 (346)
.+.++||||.||+... +.+ .++.++|+|+|++|||||++|+..
T Consensus 215 ~aRfiNHSC~PN~~~~~v~~~~~d~~~~~i~~~A~rdI~~GEELt~dY~~~ 265 (300)
T 2r3a_A 215 VSHFVNHSCDPNLQVFNVFIDNLDTRLPRIALFSTRTINAGEELTFDYQMK 265 (300)
T ss_dssp GGGGCEECSSCSEEEEEEESSCCCTTSCEEEEEESSCBCTTCEEEECGGGS
T ss_pred hHHheecCCCCCEEEEEEEeccCCCCceEEEEEEccCCCCCCEEEEECCCC
Confidence 5678999999999875 322 489999999999999999999974
No 15
>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A
Probab=98.73 E-value=7e-09 Score=97.94 Aligned_cols=44 Identities=23% Similarity=0.485 Sum_probs=36.9
Q ss_pred ccccCCCCCCCCeEEE--EeC------CEEEEEEeeccCCCCceeecccccc
Q psy5736 144 TVSLFNHDCYPAVTRY--FNG------KNIIVKALRPLKPKEVVAENYGLVF 187 (346)
Q Consensus 144 ~~s~~NHSC~PN~~~~--f~g------~~~~v~a~r~I~~Geel~~~Y~~~~ 187 (346)
.+.++||||.||+... +.+ .++.++|+|+|++|||||++|+..+
T Consensus 213 ~aRfiNHSC~PN~~~~~v~~~~~~~~~~~i~~~A~rdI~~GEELt~dY~~~~ 264 (299)
T 1mvh_A 213 VSRFFNHSCSPNIAIYSAVRNHGFRTIYDLAFFAIKDIQPLEELTFDYAGAK 264 (299)
T ss_dssp GGGGCEECSSCSEEEEEEESCTTCTTSCEEEEEESSCBCTTCBCEECCCTTS
T ss_pred hhheEeecCCCCeEEEEEEeecCCCCceEEEEEEccCcCCCCEEEEEcCCcc
Confidence 4568999999999864 322 3899999999999999999999853
No 16
>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A
Probab=98.70 E-value=4.7e-09 Score=98.70 Aligned_cols=42 Identities=21% Similarity=0.275 Sum_probs=35.6
Q ss_pred ccccCCCCCCCCeEEEEe-----CCEEEEEEeeccCCCCceeecccc
Q psy5736 144 TVSLFNHDCYPAVTRYFN-----GKNIIVKALRPLKPKEVVAENYGL 185 (346)
Q Consensus 144 ~~s~~NHSC~PN~~~~f~-----g~~~~v~a~r~I~~Geel~~~Y~~ 185 (346)
.++++||||.|||...+. +..+.|+|+|||++|||||++|+.
T Consensus 240 ~ar~iNHsc~pN~~~~~~~~~~~~~~~~~~a~r~I~~geElt~~Yg~ 286 (293)
T 1h3i_A 240 LGHKANHSFTPNCIYDMFVHPRFGPIKCIRTLRAVEADEELTVAYGY 286 (293)
T ss_dssp CGGGSEEESSCSEEEEEEEETTTEEEEEEEESSCBCTTCEEEEEEET
T ss_pred ceeeeccCCCCCeEEEEEEcCCCCcEEEEEECCccCCCCEEEEecCC
Confidence 356889999999998873 233589999999999999999986
No 17
>3qxy_A N-lysine methyltransferase SETD6; epigenetics, protein lysine methyltransferase, transferase, network VIA methyllysine signaling; HET: SAM; 2.09A {Homo sapiens} PDB: 3rc0_A*
Probab=98.70 E-value=1.2e-08 Score=101.61 Aligned_cols=65 Identities=15% Similarity=0.185 Sum_probs=57.4
Q ss_pred eeeeeeccccccCCCCCCCCeEEEEeCCEEEEEEeeccCCCCceeecccccccCCCHHHHHHHHHhhCCCcee
Q psy5736 136 YVGVGIYPTVSLFNHDCYPAVTRYFNGKNIIVKALRPLKPKEVVAENYGLVFSRKHLIDRQKVLSARYWFECK 208 (346)
Q Consensus 136 ~~g~glyp~~s~~NHSC~PN~~~~f~g~~~~v~a~r~I~~Geel~~~Y~~~~~~~~~~~R~~~L~~~~~F~C~ 208 (346)
..+.++.|.+.++||||.||+.+.|+++.+.++|.|+|++||||+++||+. + ...|...|||...
T Consensus 214 ~~~~~LvP~~D~~NH~~~~~~~~~~~~~~~~~~a~~~i~~Geei~~~YG~~----~----n~~ll~~YGF~~~ 278 (449)
T 3qxy_A 214 PNSPVMVPAADILNHLANHNANLEYSANCLRMVATQPIPKGHEIFNTYGQM----A----NWQLIHMYGFVEP 278 (449)
T ss_dssp CCCCBBCTTGGGCEECSSCSEEEEECSSEEEEEESSCBCTTCEEEECCSSC----C----HHHHHHHHSCCCC
T ss_pred CCceeEeecHHHhcCCCCCCeEEEEeCCeEEEEECCCcCCCchhhccCCCC----C----HHHHHHhCCCCCC
Confidence 357899999999999999999999999999999999999999999999972 2 3556668999874
No 18
>3smt_A Histone-lysine N-methyltransferase SETD3; histone methyltransferase, histone modification, LYSI translational modification, structural genomics; HET: SAM; 2.04A {Homo sapiens}
Probab=98.69 E-value=1.4e-08 Score=102.38 Aligned_cols=67 Identities=16% Similarity=0.123 Sum_probs=54.4
Q ss_pred eeeeeeccccccCCCCCCCCeEE-EEeCCEEEEEEeeccCCCCceeecccccccCCCHHHHHHHHHhhCCCceecC
Q psy5736 136 YVGVGIYPTVSLFNHDCYPAVTR-YFNGKNIIVKALRPLKPKEVVAENYGLVFSRKHLIDRQKVLSARYWFECKCR 210 (346)
Q Consensus 136 ~~g~glyp~~s~~NHSC~PN~~~-~f~g~~~~v~a~r~I~~Geel~~~Y~~~~~~~~~~~R~~~L~~~~~F~C~C~ 210 (346)
..+.+++|.+.++||||.|+... .+.++.+.++|.++|++||||+++||+. + ...|...|||.+.-.
T Consensus 264 ~~~~~LvP~~Dm~NH~~~~~~~~~~~~~~~~~~~a~~~i~~Geei~isYG~~----~----n~~Ll~~YGFv~~~N 331 (497)
T 3smt_A 264 RVTLALIPLWDMCNHTNGLITTGYNLEDDRCECVALQDFRAGEQIYIFYGTR----S----NAEFVIHSGFFFDNN 331 (497)
T ss_dssp SEEEEECTTGGGCEECSCSEEEEEETTTTEEEEEESSCBCTTCEEEECCCSC----C----HHHHHHHHSCCCTTC
T ss_pred cccceeechHHhhcCCCcccceeeeccCCeEEEEeCCccCCCCEEEEeCCCC----C----hHHHHHHCCCCCCCC
Confidence 35689999999999999996543 3456889999999999999999999972 2 345666899987543
No 19
>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A*
Probab=98.69 E-value=7.1e-09 Score=96.02 Aligned_cols=43 Identities=21% Similarity=0.254 Sum_probs=36.4
Q ss_pred ccccCCCCCCCCeEEEE-e----CCEEEEEEeeccCCCCceeeccccc
Q psy5736 144 TVSLFNHDCYPAVTRYF-N----GKNIIVKALRPLKPKEVVAENYGLV 186 (346)
Q Consensus 144 ~~s~~NHSC~PN~~~~f-~----g~~~~v~a~r~I~~Geel~~~Y~~~ 186 (346)
.+.++||||.||+...+ . +..+.++|+|||++|||||++|+..
T Consensus 186 ~aRfiNHSC~PN~~~~~~~~~~~~~~i~i~A~RdI~~GEELt~dYg~~ 233 (261)
T 2f69_A 186 LGHKANHSFTPNCIYDMFVHPRFGPIKCIRTLRAVEADEELTVAYGYD 233 (261)
T ss_dssp CGGGCEECSSCSEEEEEEEETTTEEEEEEEESSCBCTTCEEEECCCCC
T ss_pred ceeeEeeCCCCCeEEEEEEcCCCCcEEEEEECcccCCCCEEEEEcCCc
Confidence 35789999999999886 2 2345999999999999999999974
No 20
>2qpw_A PR domain zinc finger protein 2; methyltransferase, activator, alternative initiation, alternative splicing, DNA-binding, metal-binding, nucleus; 1.79A {Homo sapiens} PDB: 2jv0_A*
Probab=98.66 E-value=1.5e-08 Score=86.07 Aligned_cols=42 Identities=21% Similarity=0.278 Sum_probs=39.0
Q ss_pred cccCCCCCCC---CeEEEEeCCEEEEEEeeccCCCCceeeccccc
Q psy5736 145 VSLFNHDCYP---AVTRYFNGKNIIVKALRPLKPKEVVAENYGLV 186 (346)
Q Consensus 145 ~s~~NHSC~P---N~~~~f~g~~~~v~a~r~I~~Geel~~~Y~~~ 186 (346)
+.++||||.| |+...-.++++.++|+|||++||||++.|++.
T Consensus 100 ~RfINhSc~p~eqNl~~~~~~~~I~~~A~RdI~~GEEL~~dY~~~ 144 (149)
T 2qpw_A 100 LRYVNWACSGEEQNLFPLEINRAIYYKTLKPIAPGEELLVWYNGE 144 (149)
T ss_dssp GGGCEECBTTBTCCEEEEEETTEEEEEESSCBCTTCBCEECCCCC
T ss_pred eeeeeccCChhhcCEEEEEECCEEEEEEccCCCCCCEEEEccCCc
Confidence 6789999999 99987778999999999999999999999974
No 21
>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens}
Probab=98.63 E-value=1.8e-08 Score=94.70 Aligned_cols=44 Identities=18% Similarity=0.365 Sum_probs=37.4
Q ss_pred ccccCCCCCCCCeEEEE---eC--CEEEEEEeeccCCCCceeecccccc
Q psy5736 144 TVSLFNHDCYPAVTRYF---NG--KNIIVKALRPLKPKEVVAENYGLVF 187 (346)
Q Consensus 144 ~~s~~NHSC~PN~~~~f---~g--~~~~v~a~r~I~~Geel~~~Y~~~~ 187 (346)
.+.++||||.||+.... ++ .++.|+|+|+|++|||||++|+..+
T Consensus 205 ~arfiNHSC~PN~~~~~~~~~~~~~~i~~~A~rdI~~GEELt~dY~~~~ 253 (290)
T 3bo5_A 205 IGRFLNHSCEPNLLMIPVRIDSMVPKLALFAAKDIVPEEELSYDYSGRY 253 (290)
T ss_dssp GGGGCEECSSCSEEEEEEESSSSSCEEEEEESSCBCTTCEEEECTTSCT
T ss_pred chheeeecCCCCEEEEEEEeCCCceEEEEEEccccCCCCEEEEECCCcc
Confidence 45689999999998753 33 5899999999999999999999743
No 22
>2h21_A Ribulose-1,5 bisphosphate carboxylase/oxygenase; SET domain, protein lysine methyltransferase, transferase; HET: SAM; 2.45A {Pisum sativum} SCOP: a.166.1.1 b.85.7.3 PDB: 2h23_A* 2h2e_A* 2h2j_A* 1p0y_A* 1ozv_A* 1mlv_A*
Probab=98.29 E-value=7.1e-07 Score=88.31 Aligned_cols=65 Identities=22% Similarity=0.163 Sum_probs=50.4
Q ss_pred eeeeccccccCCCCCCCCe---EEEEe--------CCEEEEEEeeccCCCCceeecccccccCCCHHHHHHHHHhhCCCc
Q psy5736 138 GVGIYPTVSLFNHDCYPAV---TRYFN--------GKNIIVKALRPLKPKEVVAENYGLVFSRKHLIDRQKVLSARYWFE 206 (346)
Q Consensus 138 g~glyp~~s~~NHSC~PN~---~~~f~--------g~~~~v~a~r~I~~Geel~~~Y~~~~~~~~~~~R~~~L~~~~~F~ 206 (346)
+.++.|.+.++||+|.||. .+.+. ++.++++|.++|++||||+++||+. .+. ..|...|||.
T Consensus 183 ~~~LvP~~D~~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~i~~Geei~~sYG~~---~~N----~~LL~~YGFv 255 (440)
T 2h21_A 183 NLVVVPMADLINHSAGVTTEDHAYEVKGAAGLFSWDYLFSLKSPLSVKAGEQVYIQYDLN---KSN----AELALDYGFI 255 (440)
T ss_dssp CCBCCSSTTSCEECTTCCCCCCEEEC----------CEEEEEESSCBCTTSBCEECSCTT---CCH----HHHHHHSSCC
T ss_pred ceEEeechHhhcCCCCcccccceeeecCcccccCCCceEEEEECCCCCCCCEEEEeCCCC---CCH----HHHHHhCCCC
Confidence 5799999999999999974 33322 3579999999999999999999973 122 3466689997
Q ss_pred eec
Q psy5736 207 CKC 209 (346)
Q Consensus 207 C~C 209 (346)
..-
T Consensus 256 ~~~ 258 (440)
T 2h21_A 256 EPN 258 (440)
T ss_dssp CSC
T ss_pred cCC
Confidence 653
No 23
>3db5_A PR domain zinc finger protein 4; methyltransferase, PRDM4, structural genomics, structural GE consortium, SGC, DNA-binding, metal-binding, nucleus; 2.15A {Homo sapiens}
Probab=97.93 E-value=6.3e-06 Score=69.99 Aligned_cols=44 Identities=9% Similarity=0.123 Sum_probs=38.9
Q ss_pred ccccCCCCCCC---CeEEEEeCCEEEEEEeeccCCCCceeecccccc
Q psy5736 144 TVSLFNHDCYP---AVTRYFNGKNIIVKALRPLKPKEVVAENYGLVF 187 (346)
Q Consensus 144 ~~s~~NHSC~P---N~~~~f~g~~~~v~a~r~I~~Geel~~~Y~~~~ 187 (346)
-+.++||+|.+ |+...-.++++.++|+|+|++||||++.|++.|
T Consensus 97 WmR~Vn~A~~~~eqNl~a~q~~~~I~~~a~rdI~pGeELlv~Yg~~y 143 (151)
T 3db5_A 97 WMMFVRKARNREEQNLVAYPHDGKIFFCTSQDIPPENELLFYYSRDY 143 (151)
T ss_dssp GGGGCEECSSTTTCCEEEEEETTEEEEEESSCBCTTCBCEEEECC--
T ss_pred ceeEEEecCCcccCceEEEEECCEEEEEEccccCCCCEEEEecCHHH
Confidence 46789999976 999888899999999999999999999999855
No 24
>3ep0_A PR domain zinc finger protein 12; PR domain-containing protein 12, structural genomics, structural genomics consortium, SGC, DNA-binding; 2.10A {Homo sapiens}
Probab=97.80 E-value=1.4e-05 Score=69.11 Aligned_cols=44 Identities=16% Similarity=0.171 Sum_probs=38.7
Q ss_pred ccccCCCCCC---CCeEEEEeCCEEEEEEeeccCCCCceeecccccc
Q psy5736 144 TVSLFNHDCY---PAVTRYFNGKNIIVKALRPLKPKEVVAENYGLVF 187 (346)
Q Consensus 144 ~~s~~NHSC~---PN~~~~f~g~~~~v~a~r~I~~Geel~~~Y~~~~ 187 (346)
-+.++||+|. +|+...-.++++.++|+|+|++||||++.|++.|
T Consensus 101 WmR~Vn~A~~~~eqNl~a~q~~~~I~~~a~RdI~pGeELlvwYg~~y 147 (170)
T 3ep0_A 101 WMTYIKCARNEQEQNLEVVQIGTSIFYKAIEMIPPDQELLVWYGNSH 147 (170)
T ss_dssp GGGGCEECSSTTTCCEEEEEETTEEEEEESSCBCTTCBCEEEECC--
T ss_pred eeeeEEecCCcccCCeeeEEECCEEEEEECcCcCCCCEEEEeeCHHH
Confidence 3578999997 8998888899999999999999999999999865
No 25
>3dal_A PR domain zinc finger protein 1; methyltransferase, PRDM1, structural genomics, structural genomics consortium, SGC, DNA-binding, metal-binding; 1.65A {Homo sapiens}
Probab=97.61 E-value=3.2e-05 Score=68.28 Aligned_cols=43 Identities=19% Similarity=0.254 Sum_probs=39.3
Q ss_pred cccCCCCCC---CCeEEEEeCCEEEEEEeeccCCCCceeecccccc
Q psy5736 145 VSLFNHDCY---PAVTRYFNGKNIIVKALRPLKPKEVVAENYGLVF 187 (346)
Q Consensus 145 ~s~~NHSC~---PN~~~~f~g~~~~v~a~r~I~~Geel~~~Y~~~~ 187 (346)
+.++||+|. +|+...-.++++.++|+|+|++||||++.|++.|
T Consensus 132 mRfVn~A~~~~eqNl~a~q~~~~I~y~a~RdI~pGeELlvwYg~~Y 177 (196)
T 3dal_A 132 MRYVNPAHSPREQNLAACQNGMNIYFYTIKPIPANQELLVWYCRDF 177 (196)
T ss_dssp GGGCEECSSTTTCCEEEEEETTEEEEEESSCBCTTCBCEEEECHHH
T ss_pred EEeEEecCCcccCCcEEEEECCEEEEEECcccCCCCEEEEecCHHH
Confidence 678999997 7999888899999999999999999999999854
No 26
>3ihx_A PR domain zinc finger protein 10; PRDM10, methyltransferase, structural genomics, structural G consortium, SGC, DNA-binding, metal-binding, nucleus; 2.50A {Homo sapiens}
Probab=97.46 E-value=6.8e-05 Score=63.65 Aligned_cols=43 Identities=12% Similarity=0.293 Sum_probs=39.7
Q ss_pred cccCCCCCC---CCeEEEEeCCEEEEEEeeccCCCCceeecccccc
Q psy5736 145 VSLFNHDCY---PAVTRYFNGKNIIVKALRPLKPKEVVAENYGLVF 187 (346)
Q Consensus 145 ~s~~NHSC~---PN~~~~f~g~~~~v~a~r~I~~Geel~~~Y~~~~ 187 (346)
+.++||+|. +|+...-.++++.++|+|+|++||||.+.|++.|
T Consensus 97 mr~vn~a~~~~eqNl~a~q~~~~I~~~~~r~I~pGeELlv~Y~~~y 142 (152)
T 3ihx_A 97 MMFVRPAQNHLEQNLVAYQYGHHVYYTTIKNVEPKQELKVWYAASY 142 (152)
T ss_dssp GGGCCBCCSTTTCCEEEEECSSSEEEEESSCBCTTCBCCEEECHHH
T ss_pred eeeeeccCCccCCCcEEEEeCCeEEEEEeeecCCCCEEEEechHHH
Confidence 678999998 7999988899999999999999999999999854
No 27
>3ray_A PR domain-containing protein 11; structural genomics consortium, SGC, histone methylation, Zn transcriptional regulation, chromatin, transcription; 1.73A {Homo sapiens}
Probab=97.24 E-value=0.00016 Score=65.38 Aligned_cols=44 Identities=14% Similarity=0.165 Sum_probs=39.6
Q ss_pred ccccCCCCCC---CCeEEEEeCCEEEEEEeeccCCCCceeecccccc
Q psy5736 144 TVSLFNHDCY---PAVTRYFNGKNIIVKALRPLKPKEVVAENYGLVF 187 (346)
Q Consensus 144 ~~s~~NHSC~---PN~~~~f~g~~~~v~a~r~I~~Geel~~~Y~~~~ 187 (346)
-+.++||+|. +|+...-.++.+.++|+|+|++||||.+.|++.|
T Consensus 140 WmRfVn~Ar~~~EqNL~A~q~~~~Iyy~a~RdI~pGeELlVwYg~~Y 186 (237)
T 3ray_A 140 WMRYVVISREEREQNLLAFQHSERIYFRACRDIRPGEWLRVWYSEDY 186 (237)
T ss_dssp GGGGCEECCCTTTCCEEEEEETTEEEEEESSCBCTTCBCEEEECHHH
T ss_pred ceeEEEcCCCcccccceeEEeCCEEEEEEccccCCCCEEEEeeCHHH
Confidence 3579999997 6999888899999999999999999999999854
No 28
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=96.76 E-value=0.0019 Score=58.11 Aligned_cols=56 Identities=11% Similarity=0.225 Sum_probs=45.0
Q ss_pred CcccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736 2 TGLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN 64 (346)
Q Consensus 2 ~~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~ 64 (346)
+|++++|.|||.++++.+..+.-.. |...|+++.+. +++.++++|+.||.|++|..
T Consensus 41 vg~D~tV~iWd~~tg~~~~~~~~~~-----~~~~V~~v~~~--~~~~~l~sgs~Dg~v~iw~~ 96 (318)
T 4ggc_A 41 VALDNSVYLWSASSGDILQLLQMEQ-----PGEYISSVAWI--KEGNYLAVGTSSAEVQLWDV 96 (318)
T ss_dssp EEETTEEEEEETTTCCEEEEEECCS-----TTCCEEEEEEC--TTSSEEEEEETTSEEEEEET
T ss_pred EEeCCEEEEEECCCCCEEEEEEecC-----CCCeEEEEEEC--CCCCEEEEEECCCcEEEeec
Confidence 4789999999999998777665333 56789999864 35678899999999999953
No 29
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=96.51 E-value=0.0035 Score=59.17 Aligned_cols=54 Identities=9% Similarity=-0.023 Sum_probs=45.9
Q ss_pred cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736 3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN 64 (346)
Q Consensus 3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~ 64 (346)
+.+|+|.|||.++++.+..|..+ |...|++|.|- +|..++++|+.||.||+|..
T Consensus 288 s~D~~V~iwd~~~~~~~~~~~~g------H~~~V~~v~fS--pdg~~laS~S~D~tvrvw~i 341 (365)
T 4h5i_A 288 SNDNSIALVKLKDLSMSKIFKQA------HSFAITEVTIS--PDSTYVASVSAANTIHIIKL 341 (365)
T ss_dssp ETTSCEEEEETTTTEEEEEETTS------SSSCEEEEEEC--TTSCEEEEEETTSEEEEEEC
T ss_pred cCCCEEEEEECCCCcEEEEecCc------ccCCEEEEEEC--CCCCEEEEEeCCCeEEEEEc
Confidence 46899999999999988877544 67789999973 57888999999999999965
No 30
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=96.49 E-value=0.0033 Score=60.10 Aligned_cols=56 Identities=11% Similarity=0.225 Sum_probs=45.3
Q ss_pred CcccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736 2 TGLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN 64 (346)
Q Consensus 2 ~~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~ 64 (346)
+|++++|.|||.++|+.+..+.-.. |...|++|.|. +++.++++|+.||.|++|..
T Consensus 121 vgld~tV~lWd~~tg~~~~~~~~~~-----~~~~V~sv~fs--pdg~~lasgs~Dg~v~iWd~ 176 (420)
T 4gga_A 121 VALDNSVYLWSASSGDILQLLQMEQ-----PGEYISSVAWI--KEGNYLAVGTSSAEVQLWDV 176 (420)
T ss_dssp EEETTEEEEEETTTCCEEEEEECCS-----TTCCEEEEEEC--TTSSEEEEEETTSCEEEEET
T ss_pred EEeCCEEEEEECCCCCEEEEEEecC-----CCCcEEEEEEC--CCCCEEEEEECCCeEEEEEc
Confidence 5889999999999998766554332 56789999984 36788899999999999953
No 31
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=96.44 E-value=0.0046 Score=55.44 Aligned_cols=54 Identities=19% Similarity=0.308 Sum_probs=45.3
Q ss_pred ccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeCCc
Q psy5736 4 LFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNYA 66 (346)
Q Consensus 4 ~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~~~ 66 (346)
-+|+|.|||..+++.+..+. -|...|++|.+. ++..++++|+.||.|++|+.++
T Consensus 262 ~d~~i~iwd~~~~~~~~~l~-------gH~~~V~~l~~s--pdg~~l~S~s~D~~v~iWd~~~ 315 (318)
T 4ggc_A 262 AQNQLVIWKYPTMAKVAELK-------GHTSRVLSLTMS--PDGATVASAAADETLRLWRCFE 315 (318)
T ss_dssp TTCCEEEEETTTCCEEEEEC-------CCSSCEEEEEEC--TTSSCEEEEETTTEEEEECCSC
T ss_pred CCCEEEEEECCCCcEEEEEc-------CCCCCEEEEEEc--CCCCEEEEEecCCeEEEEECCC
Confidence 57899999999999998874 267789999864 4677889999999999998764
No 32
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=96.00 E-value=0.0086 Score=57.50 Aligned_cols=55 Identities=9% Similarity=0.041 Sum_probs=43.0
Q ss_pred cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEe
Q psy5736 3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYR 63 (346)
Q Consensus 3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r 63 (346)
+.+|+|.|||++++......... .|...|++|.| ++.+..++++|+.||.|++|.
T Consensus 139 s~dg~i~lWd~~~~~~~~~~~~~-----gH~~~V~~l~f-~p~~~~~l~s~s~D~~v~iwd 193 (435)
T 4e54_B 139 SKGGDIMLWNFGIKDKPTFIKGI-----GAGGSITGLKF-NPLNTNQFYASSMEGTTRLQD 193 (435)
T ss_dssp ETTSCEEEECSSCCSCCEEECCC-----SSSCCCCEEEE-CSSCTTEEEEECSSSCEEEEE
T ss_pred eCCCEEEEEECCCCCceeEEEcc-----CCCCCEEEEEE-eCCCCCEEEEEeCCCEEEEee
Confidence 36899999999988665544322 27788999996 445677889999999999994
No 33
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=95.82 E-value=0.013 Score=55.94 Aligned_cols=54 Identities=19% Similarity=0.308 Sum_probs=45.4
Q ss_pred ccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeCCc
Q psy5736 4 LFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNYA 66 (346)
Q Consensus 4 ~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~~~ 66 (346)
-+|+|.|||+.+++.+..+. -|...|++|.+- +++.++++|+.||.|++|+.++
T Consensus 342 ~d~~I~iwd~~~~~~v~~l~-------gH~~~V~~l~~s--pdg~~l~S~s~D~tvriWdv~~ 395 (420)
T 4gga_A 342 AQNQLVIWKYPTMAKVAELK-------GHTSRVLSLTMS--PDGATVASAAADETLRLWRCFE 395 (420)
T ss_dssp TTCCEEEEETTTCCEEEEEC-------CCSSCEEEEEEC--TTSSCEEEEETTTEEEEECCSC
T ss_pred CCCEEEEEECCCCcEEEEEc-------CCCCCEEEEEEc--CCCCEEEEEecCCeEEEEECCC
Confidence 47899999999999998874 267789999863 4677889999999999998774
No 34
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=95.46 E-value=0.023 Score=51.27 Aligned_cols=60 Identities=22% Similarity=0.276 Sum_probs=42.7
Q ss_pred cccceEEEEecCCCceeeeeCCCCCC--CCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736 3 GLFLKEGIWDHITGSRLISWRPDRGS--WARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN 64 (346)
Q Consensus 3 ~~~~~~~~w~~~~~~~~~~~~~~~~~--w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~ 64 (346)
+-+|+|.|||.+++..+..+...... ...|...|++|.+- ++..++++|+.||.|++|+.
T Consensus 274 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s--~dg~~l~sgs~Dg~v~iW~~ 335 (340)
T 4aow_A 274 ATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWS--ADGQTLFAGYTDNLVRVWQV 335 (340)
T ss_dssp EETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEEC--TTSSEEEEEETTSCEEEEEE
T ss_pred cCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEEC--CCCCEEEEEeCCCEEEEEeC
Confidence 45788999999888777766543221 22366788998863 46678899999999999963
No 35
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=94.96 E-value=0.027 Score=53.37 Aligned_cols=61 Identities=7% Similarity=0.010 Sum_probs=46.6
Q ss_pred cccceEEEEecCCCceeeeeCCCC------------------------------CCCCCCCCcccceeccccCCCceEEe
Q psy5736 3 GLFLKEGIWDHITGSRLISWRPDR------------------------------GSWARNSARCTALTLLNEHDDSLLLT 52 (346)
Q Consensus 3 ~~~~~~~~w~~~~~~~~~~~~~~~------------------------------~~w~~~~~~~t~l~~ine~~~~lll~ 52 (346)
|.+|+|.|||..+++.+..+.... .....|...|+++.+....+..++++
T Consensus 347 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s 426 (437)
T 3gre_A 347 EATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVA 426 (437)
T ss_dssp GGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEE
T ss_pred CCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEE
Confidence 568999999999998776665321 00122778899999988877889999
Q ss_pred eecCCceEEEe
Q psy5736 53 GYDDGSLSVYR 63 (346)
Q Consensus 53 g~~dG~vri~r 63 (346)
|+.||.|++|+
T Consensus 427 ~~~dG~I~iw~ 437 (437)
T 3gre_A 427 CDNSGLIGIFQ 437 (437)
T ss_dssp EETTSCEEEEC
T ss_pred EcCCceEEEeC
Confidence 99999999995
No 36
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=94.76 E-value=0.047 Score=50.98 Aligned_cols=56 Identities=16% Similarity=0.137 Sum_probs=45.5
Q ss_pred cccce-EEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeCC
Q psy5736 3 GLFLK-EGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNY 65 (346)
Q Consensus 3 ~~~~~-~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~~ 65 (346)
+.+|+ |.|||..+++.+..|..+. |...|+++.+- ++..++++|+.||.|++|..-
T Consensus 214 s~d~~~v~iwd~~~~~~~~~~~~g~-----h~~~v~~~~~s--~~~~~l~s~s~d~~v~iw~~~ 270 (355)
T 3vu4_A 214 SQDGTIIRVFKTEDGVLVREFRRGL-----DRADVVDMKWS--TDGSKLAVVSDKWTLHVFEIF 270 (355)
T ss_dssp ETTCSEEEEEETTTCCEEEEEECTT-----CCSCEEEEEEC--TTSCEEEEEETTCEEEEEESS
T ss_pred eCCCCEEEEEECCCCcEEEEEEcCC-----CCCcEEEEEEC--CCCCEEEEEECCCEEEEEEcc
Confidence 46888 9999999999998886442 55789998863 467788999999999999654
No 37
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=94.59 E-value=0.044 Score=51.25 Aligned_cols=54 Identities=11% Similarity=-0.130 Sum_probs=43.1
Q ss_pred cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeCC
Q psy5736 3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNY 65 (346)
Q Consensus 3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~~ 65 (346)
+-+|+|.|||.++++.+..+ .|...|++|.| ++.+..++++|+.||.|++|..-
T Consensus 289 s~D~~i~iwd~~~~~~~~~~--------~H~~~V~~vaf-sP~d~~~l~s~s~Dg~v~iW~~~ 342 (357)
T 4g56_B 289 SEDCTVAVLDADFSEVFRDL--------SHRDFVTGVAW-SPLDHSKFTTVGWDHKVLHHHLP 342 (357)
T ss_dssp ETTSCEEEECTTSCEEEEEC--------CCSSCEEEEEE-CSSSTTEEEEEETTSCEEEEECC
T ss_pred eCCCEEEEEECCCCcEeEEC--------CCCCCEEEEEE-eCCCCCEEEEEcCCCeEEEEECC
Confidence 45799999999998766543 26778999985 55567888999999999999654
No 38
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=94.54 E-value=0.067 Score=50.24 Aligned_cols=59 Identities=17% Similarity=0.311 Sum_probs=46.3
Q ss_pred cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736 3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN 64 (346)
Q Consensus 3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~ 64 (346)
+-+|+|.|||.++++.+..|....+ ..|...+.++.+ +..+..++++|+.||.|++|..
T Consensus 177 s~D~~i~~wd~~~~~~~~~~~~~~~--~~h~~~v~~~~~-~~~~~~~l~sgs~D~~v~~wd~ 235 (380)
T 3iz6_a 177 SGDQTCVLWDVTTGQRISIFGSEFP--SGHTADVLSLSI-NSLNANMFISGSCDTTVRLWDL 235 (380)
T ss_dssp CTTSCEEEECTTTCCEEEEECCCSS--SSCCSCEEEEEE-CSSSCCEEEEEETTSCEEEEET
T ss_pred CCCCcEEEEEcCCCcEEEEeecccC--CCCccCeEEEEe-ecCCCCEEEEEECCCeEEEEEC
Confidence 4689999999999999888754332 236678888875 4566788899999999999954
No 39
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=94.39 E-value=0.046 Score=52.09 Aligned_cols=52 Identities=15% Similarity=0.227 Sum_probs=42.6
Q ss_pred cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEe
Q psy5736 3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYR 63 (346)
Q Consensus 3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r 63 (346)
+.+|+|.|||++++.....+. .|...|+++.+. +++.++++|+.||.|++|.
T Consensus 127 s~Dg~i~vwd~~~~~~~~~l~-------~h~~~V~~v~~~--~~~~~l~sgs~D~~i~iwd 178 (410)
T 1vyh_C 127 SEDATIKVWDYETGDFERTLK-------GHTDSVQDISFD--HSGKLLASCSADMTIKLWD 178 (410)
T ss_dssp ESSSCEEEEETTTCCCCEEEC-------CCSSCEEEEEEC--TTSSEEEEEETTSCCCEEE
T ss_pred eCCCeEEEEECCCCcEEEEEe-------ccCCcEEEEEEc--CCCCEEEEEeCCCeEEEEe
Confidence 468999999999998776663 256789999874 4567889999999999994
No 40
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=94.39 E-value=0.03 Score=51.27 Aligned_cols=55 Identities=13% Similarity=0.145 Sum_probs=42.8
Q ss_pred cccceEEEEecCCCce--eeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736 3 GLFLKEGIWDHITGSR--LISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN 64 (346)
Q Consensus 3 ~~~~~~~~w~~~~~~~--~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~ 64 (346)
+.+|+|.|||.+++.. +..+. .|...|+++.+..+.+..++++|+.||.|++|..
T Consensus 32 s~D~~v~lwd~~~~~~~~~~~l~-------gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~ 88 (316)
T 3bg1_A 32 SSDRSVKIFDVRNGGQILIADLR-------GHEGPVWQVAWAHPMYGNILASCSYDRKVIIWRE 88 (316)
T ss_dssp ETTTEEEEEEEETTEEEEEEEEE-------CCSSCEEEEEECCGGGSSCEEEEETTSCEEEECC
T ss_pred eCCCeEEEEEecCCCcEEEEEEc-------CCCccEEEEEeCCCCCCCEEEEEECCCEEEEEEC
Confidence 4689999999988753 33332 2677899999876556778899999999999954
No 41
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=94.36 E-value=0.031 Score=52.35 Aligned_cols=57 Identities=12% Similarity=0.143 Sum_probs=43.0
Q ss_pred cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736 3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN 64 (346)
Q Consensus 3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~ 64 (346)
+-+|+|.|||.++++.+..+..... .|...|++|.+. ++..++++|+.||.|++|..
T Consensus 100 s~dg~v~lWd~~~~~~~~~~~~~~~---~H~~~V~~v~~s--pdg~~l~sgs~d~~i~iwd~ 156 (344)
T 4gqb_B 100 SDSGAVELWELDENETLIVSKFCKY---EHDDIVSTVSVL--SSGTQAVSGSKDICIKVWDL 156 (344)
T ss_dssp ETTSEEEEEEECTTSSCEEEEEEEE---CCSSCEEEEEEC--TTSSEEEEEETTSCEEEEET
T ss_pred ECCCEEEEEeccCCCceeEeecccc---CCCCCEEEEEEC--CCCCEEEEEeCCCeEEEEEC
Confidence 4579999999999876654332111 267789999874 46778899999999999953
No 42
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=94.35 E-value=0.064 Score=50.18 Aligned_cols=54 Identities=22% Similarity=0.383 Sum_probs=43.8
Q ss_pred cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736 3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN 64 (346)
Q Consensus 3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~ 64 (346)
+.+|+|.|||.++++.+..|. .|...|+++.+ +.++..++++|+.||.|++|..
T Consensus 146 s~d~~i~iwd~~~~~~~~~~~-------~h~~~V~~~~~-~~~~~~~l~s~s~D~~v~iwd~ 199 (344)
T 4gqb_B 146 SKDICIKVWDLAQQVVLSSYR-------AHAAQVTCVAA-SPHKDSVFLSCSEDNRILLWDT 199 (344)
T ss_dssp ETTSCEEEEETTTTEEEEEEC-------CCSSCEEEEEE-CSSCTTEEEEEETTSCEEEEET
T ss_pred eCCCeEEEEECCCCcEEEEEc-------CcCCceEEEEe-cCCCCCceeeeccccccccccc
Confidence 468999999999998887774 25678999886 4456678899999999999953
No 43
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=94.30 E-value=0.066 Score=48.55 Aligned_cols=52 Identities=12% Similarity=0.306 Sum_probs=42.8
Q ss_pred cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEe
Q psy5736 3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYR 63 (346)
Q Consensus 3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r 63 (346)
+.+|+|.|||.++++.+..|.. |...|++|.+. ++..++++|+.||.|++|.
T Consensus 74 s~d~~i~vwd~~~~~~~~~~~~-------h~~~v~~~~~~--~~~~~l~sgs~D~~v~lWd 125 (304)
T 2ynn_A 74 SDDFRIRVFNYNTGEKVVDFEA-------HPDYIRSIAVH--PTKPYVLSGSDDLTVKLWN 125 (304)
T ss_dssp ETTSEEEEEETTTCCEEEEEEC-------CSSCEEEEEEC--SSSSEEEEEETTSCEEEEE
T ss_pred CCCCEEEEEECCCCcEEEEEeC-------CCCcEEEEEEc--CCCCEEEEECCCCeEEEEE
Confidence 4589999999999988877742 56789999864 3567889999999999995
No 44
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=93.98 E-value=0.076 Score=50.67 Aligned_cols=56 Identities=16% Similarity=0.269 Sum_probs=47.2
Q ss_pred cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeCC
Q psy5736 3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNY 65 (346)
Q Consensus 3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~~ 65 (346)
+.+|+|.|||.++++.+..|.. |...|+++.+....+..++++|+.||.+++|..-
T Consensus 180 s~dg~i~vwd~~~~~~~~~~~~-------h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~ 235 (464)
T 3v7d_B 180 STDRTVRVWDIKKGCCTHVFEG-------HNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLP 235 (464)
T ss_dssp ETTSCEEEEETTTTEEEEEECC-------CSSCEEEEEEEESSSCEEEEEEETTSCEEEEECC
T ss_pred eCCCCEEEEECCCCcEEEEECC-------CCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCC
Confidence 5689999999999988877742 5678999998877778899999999999999543
No 45
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=93.91 E-value=0.043 Score=48.94 Aligned_cols=55 Identities=9% Similarity=0.143 Sum_probs=42.1
Q ss_pred cccceEEEEecCCCc----eeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736 3 GLFLKEGIWDHITGS----RLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN 64 (346)
Q Consensus 3 ~~~~~~~~w~~~~~~----~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~ 64 (346)
+.+|+|.|||..++. .+..+. .|...|++|.+....+..++++|+.||.|++|..
T Consensus 30 ~~dg~i~iw~~~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~ 88 (351)
T 3f3f_A 30 SSDQHIKVFKLDKDTSNWELSDSWR-------AHDSSIVAIDWASPEYGRIIASASYDKTVKLWEE 88 (351)
T ss_dssp ETTSEEEEEEECSSSCCEEEEEEEE-------CCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEE
T ss_pred eCCCeEEEEECCCCCCcceecceec-------cCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEec
Confidence 457999999999764 233332 2667899999876546788899999999999954
No 46
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=93.91 E-value=0.059 Score=48.70 Aligned_cols=55 Identities=7% Similarity=0.041 Sum_probs=42.1
Q ss_pred cccceEEEEecCCC--ceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736 3 GLFLKEGIWDHITG--SRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN 64 (346)
Q Consensus 3 ~~~~~~~~w~~~~~--~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~ 64 (346)
+.+|+|.|||.+.+ +.+..+. .|...|+++.+-...+..++++|+.||.|++|..
T Consensus 28 s~D~~v~iw~~~~~~~~~~~~l~-------gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~ 84 (297)
T 2pm7_B 28 SSDKTIKIFEVEGETHKLIDTLT-------GHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKE 84 (297)
T ss_dssp ETTSCEEEEEBCSSCBCCCEEEC-------CCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEB
T ss_pred eCCCEEEEEecCCCCcEEEEEEc-------cccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEc
Confidence 56899999999754 3344442 3677899999865555778899999999999964
No 47
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=93.91 E-value=0.08 Score=49.93 Aligned_cols=54 Identities=15% Similarity=0.272 Sum_probs=44.3
Q ss_pred cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceecccc----CCCceEEeeecCCceEEEe
Q psy5736 3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNE----HDDSLLLTGYDDGSLSVYR 63 (346)
Q Consensus 3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine----~~~~lll~g~~dG~vri~r 63 (346)
+.+|+|.|||..+++.+..+. .|...|+++.+.+. ++..++++|+.||.|++|+
T Consensus 329 s~D~~v~iwd~~~~~~~~~l~-------~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~ 386 (393)
T 1erj_A 329 SKDRGVLFWDKKSGNPLLMLQ-------GHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWK 386 (393)
T ss_dssp ETTSEEEEEETTTCCEEEEEE-------CCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEE
T ss_pred eCCCeEEEEECCCCeEEEEEC-------CCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECc
Confidence 568999999999998887663 25678999988763 3578899999999999995
No 48
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=93.83 E-value=0.11 Score=47.16 Aligned_cols=57 Identities=11% Similarity=0.017 Sum_probs=45.2
Q ss_pred cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeCC
Q psy5736 3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNY 65 (346)
Q Consensus 3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~~ 65 (346)
+.+|+|.|||..++..+..+..-. .|...|+++.+.. +..++++|+.||.|++|..-
T Consensus 135 ~~dg~i~iwd~~~~~~~~~~~~~~----~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~ 191 (366)
T 3k26_A 135 SKDHALRLWNIQTDTLVAIFGGVE----GHRDEVLSADYDL--LGEKIMSCGMDHSLKLWRIN 191 (366)
T ss_dssp ETTSCEEEEETTTTEEEEEECSTT----SCSSCEEEEEECT--TSSEEEEEETTSCEEEEESC
T ss_pred eCCCeEEEEEeecCeEEEEecccc----cccCceeEEEECC--CCCEEEEecCCCCEEEEECC
Confidence 458999999999998888775322 2667899998754 56678999999999999654
No 49
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=93.78 E-value=0.12 Score=48.37 Aligned_cols=57 Identities=21% Similarity=0.225 Sum_probs=43.9
Q ss_pred cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736 3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN 64 (346)
Q Consensus 3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~ 64 (346)
+-+|+|.|||..++..+..+..-.. .|...|++|.+- ++..++++|+.||.|++|..
T Consensus 317 ~~dg~i~vwd~~~~~~~~~~~~~~~---~h~~~v~~l~~s--~dg~~l~sgs~D~~i~iW~~ 373 (380)
T 3iz6_a 317 YSNGDCYVWDTLLAEMVLNLGTLQN---SHEGRISCLGLS--SDGSALCTGSWDKNLKIWAF 373 (380)
T ss_dssp CTTSCEEEEETTTCCEEEEECCSCS---SCCCCCCEEEEC--SSSSEEEEECTTSCEEEEEC
T ss_pred ECCCCEEEEECCCCceEEEEecccC---CCCCceEEEEEC--CCCCEEEEeeCCCCEEEEec
Confidence 3578999999999887766633221 377889999864 46778899999999999964
No 50
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=93.67 E-value=0.099 Score=47.76 Aligned_cols=53 Identities=15% Similarity=0.309 Sum_probs=43.1
Q ss_pred cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736 3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN 64 (346)
Q Consensus 3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~ 64 (346)
+.+|+|.|||.++++.+..|. .|...|+++.+- ++..++++|+.||.|++|..
T Consensus 84 s~D~~v~~wd~~~~~~~~~~~-------~h~~~v~~~~~~--~~~~~l~s~s~D~~i~vwd~ 136 (319)
T 3frx_A 84 SWDKTLRLWDVATGETYQRFV-------GHKSDVMSVDID--KKASMIISGSRDKTIKVWTI 136 (319)
T ss_dssp ETTSEEEEEETTTTEEEEEEE-------CCSSCEEEEEEC--TTSCEEEEEETTSCEEEEET
T ss_pred eCCCEEEEEECCCCCeeEEEc-------cCCCcEEEEEEc--CCCCEEEEEeCCCeEEEEEC
Confidence 568999999999998887774 256789998863 35678899999999999953
No 51
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=93.64 E-value=0.11 Score=48.48 Aligned_cols=55 Identities=20% Similarity=0.212 Sum_probs=44.4
Q ss_pred cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736 3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN 64 (346)
Q Consensus 3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~ 64 (346)
+-+|+|.|||.++++.+..|.. |...++++.+.-..+..++++|+.||.|++|..
T Consensus 173 s~D~~v~lwd~~~~~~~~~~~~-------h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~ 227 (354)
T 2pbi_B 173 SGDGTCALWDVESGQLLQSFHG-------HGADVLCLDLAPSETGNTFVSGGCDKKAMVWDM 227 (354)
T ss_dssp ETTSEEEEEETTTCCEEEEEEC-------CSSCEEEEEECCCSSCCEEEEEETTSCEEEEET
T ss_pred eCCCcEEEEeCCCCeEEEEEcC-------CCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEEC
Confidence 4579999999999988887742 556788888655456688899999999999954
No 52
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=93.59 E-value=0.11 Score=47.14 Aligned_cols=56 Identities=11% Similarity=0.153 Sum_probs=42.7
Q ss_pred cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736 3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN 64 (346)
Q Consensus 3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~ 64 (346)
+.+|+|.|||..++.....+..+ +...+..+.+....+..++++|+.||.|++|..
T Consensus 160 s~D~~v~iwd~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~ 215 (304)
T 2ynn_A 160 CLDRTVKVWSLGQSTPNFTLTTG------QERGVNYVDYYPLPDKPYMITASDDLTIKIWDY 215 (304)
T ss_dssp ETTSEEEEEETTCSSCSEEEECC------CTTCEEEEEECCSTTCCEEEEEETTSEEEEEET
T ss_pred eCCCeEEEEECCCCCccceeccC------CcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeC
Confidence 56899999999887665555433 334577777666567789999999999999954
No 53
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=93.47 E-value=0.096 Score=47.36 Aligned_cols=54 Identities=15% Similarity=0.224 Sum_probs=44.4
Q ss_pred cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736 3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN 64 (346)
Q Consensus 3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~ 64 (346)
+.+|+|.|||.+++..+..+ .|...|+++.+....+..++++|+.||.|++|..
T Consensus 105 ~~dg~v~iwd~~~~~~~~~~--------~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~ 158 (368)
T 3mmy_A 105 SCDKTAKMWDLSSNQAIQIA--------QHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDT 158 (368)
T ss_dssp ETTSEEEEEETTTTEEEEEE--------ECSSCEEEEEEEECSSCEEEEEEETTSEEEEECS
T ss_pred cCCCcEEEEEcCCCCceeec--------cccCceEEEEEEeCCCCCEEEEccCCCcEEEEEC
Confidence 45899999999999766543 2567899999876677888899999999999954
No 54
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=93.41 E-value=0.12 Score=48.78 Aligned_cols=61 Identities=16% Similarity=0.204 Sum_probs=43.9
Q ss_pred cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeCC
Q psy5736 3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNY 65 (346)
Q Consensus 3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~~ 65 (346)
+.+|+|.|||.+++..+..+.........|...|+++.+. ++..++++|+.||.|++|..-
T Consensus 226 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~--~~g~~l~s~s~d~~v~~wd~~ 286 (393)
T 1erj_A 226 SLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFT--RDGQSVVSGSLDRSVKLWNLQ 286 (393)
T ss_dssp ETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEEC--TTSSEEEEEETTSEEEEEEC-
T ss_pred cCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEEC--CCCCEEEEEeCCCEEEEEECC
Confidence 4689999999999987777654333223477789998864 356778999999999999643
No 55
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=93.39 E-value=0.12 Score=49.08 Aligned_cols=55 Identities=22% Similarity=0.357 Sum_probs=44.5
Q ss_pred cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeCC
Q psy5736 3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNY 65 (346)
Q Consensus 3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~~ 65 (346)
+.+|+|.|||..+++.+..+..... |...|+++.+ +..++++|+.||.|++|..-
T Consensus 336 ~~dg~i~vwd~~~~~~~~~~~~~~~----~~~~v~~~~~----~~~~l~s~~~dg~v~iwd~~ 390 (445)
T 2ovr_B 336 NADSTVKIWDIKTGQCLQTLQGPNK----HQSAVTCLQF----NKNFVITSSDDGTVKLWDLK 390 (445)
T ss_dssp ETTSCEEEEETTTCCEEEEECSTTS----CSSCEEEEEE----CSSEEEEEETTSEEEEEETT
T ss_pred eCCCeEEEEECCCCcEEEEEccCCC----CCCCEEEEEE----CCCEEEEEeCCCeEEEEECC
Confidence 4589999999999988888865442 6678999887 35788999999999999644
No 56
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=93.37 E-value=0.13 Score=46.62 Aligned_cols=54 Identities=20% Similarity=0.164 Sum_probs=43.9
Q ss_pred cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736 3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN 64 (346)
Q Consensus 3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~ 64 (346)
+.+|+|.|||.++++.+..+. .|...|+++.+.. .+..++++|+.||.|++|..
T Consensus 92 ~~dg~i~v~d~~~~~~~~~~~-------~~~~~i~~~~~~~-~~~~~l~s~~~dg~i~iwd~ 145 (366)
T 3k26_A 92 GSRGIIRIINPITMQCIKHYV-------GHGNAINELKFHP-RDPNLLLSVSKDHALRLWNI 145 (366)
T ss_dssp ETTCEEEEECTTTCCEEEEEE-------SCCSCEEEEEECS-SCTTEEEEEETTSCEEEEET
T ss_pred cCCCEEEEEEchhceEeeeec-------CCCCcEEEEEECC-CCCCEEEEEeCCCeEEEEEe
Confidence 468999999999998887774 2567899998653 46678899999999999954
No 57
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=93.35 E-value=0.13 Score=47.28 Aligned_cols=56 Identities=21% Similarity=0.303 Sum_probs=43.4
Q ss_pred cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeCC
Q psy5736 3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNY 65 (346)
Q Consensus 3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~~ 65 (346)
+.+|+|.|||..+++.+..+...+ +...|+++.+- ++..++++|+.||.|++|...
T Consensus 245 s~d~~v~iwd~~~~~~~~~~~~~~-----~~~~v~~~~~s--~~g~~l~~g~~d~~i~vwd~~ 300 (340)
T 1got_B 245 SDDATCRLFDLRADQELMTYSHDN-----IICGITSVSFS--KSGRLLLAGYDDFNCNVWDAL 300 (340)
T ss_dssp ETTSCEEEEETTTTEEEEEECCTT-----CCSCEEEEEEC--TTSSEEEEEETTSEEEEEETT
T ss_pred cCCCcEEEEECCCCcEEEEEccCC-----cccceEEEEEC--CCCCEEEEECCCCeEEEEEcc
Confidence 468999999999998887775333 34468888753 467788999999999999643
No 58
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=93.25 E-value=0.2 Score=48.85 Aligned_cols=49 Identities=10% Similarity=-0.050 Sum_probs=46.1
Q ss_pred HhccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCCc
Q psy5736 286 QMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGNK 334 (346)
Q Consensus 286 ~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~~ 334 (346)
....|++++|+.++++.|+.+.++++|.||.+......|+..|...|+.
T Consensus 339 y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~ 387 (429)
T 3qwp_A 339 CINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMF 387 (429)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCH
T ss_pred HHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCH
Confidence 3567999999999999999999999999999999999999999999975
No 59
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=93.18 E-value=0.23 Score=48.66 Aligned_cols=50 Identities=10% Similarity=-0.120 Sum_probs=46.6
Q ss_pred HHhccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCCc
Q psy5736 285 EQMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGNK 334 (346)
Q Consensus 285 ~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~~ 334 (346)
-....|++++|+.++++.|+.+.+++.|.|+.+......|+..|...|+.
T Consensus 349 ~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~ 398 (433)
T 3qww_A 349 VCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENK 398 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCH
Confidence 34567999999999999999999999999999999999999999999975
No 60
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=93.05 E-value=0.077 Score=50.71 Aligned_cols=56 Identities=20% Similarity=0.164 Sum_probs=42.8
Q ss_pred cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736 3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN 64 (346)
Q Consensus 3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~ 64 (346)
+.+|+|.|||..++.....+.... .|...|+++.|- +++.++++|+.||.|++|..
T Consensus 270 s~d~~v~iwd~~~~~~~~~~~~~~----~h~~~v~~~~~s--pdg~~l~s~~~D~~i~iwd~ 325 (435)
T 4e54_B 270 SVDQTVKIWDLRQVRGKASFLYSL----PHRHPVNAACFS--PDGARLLTTDQKSEIRVYSA 325 (435)
T ss_dssp ETTSBCCEEETTTCCSSSCCSBCC----BCSSCEEECCBC--TTSSEEEEEESSSCEEEEES
T ss_pred cCcceeeEEecccccccceEEEee----eccccccceeEC--CCCCeeEEEcCCCEEEEEEC
Confidence 468999999998876555443333 367789998863 46778899999999999954
No 61
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=92.91 E-value=0.1 Score=47.57 Aligned_cols=55 Identities=7% Similarity=0.033 Sum_probs=42.4
Q ss_pred cccceEEEEecCC--CceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736 3 GLFLKEGIWDHIT--GSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN 64 (346)
Q Consensus 3 ~~~~~~~~w~~~~--~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~ 64 (346)
+-+|+|.|||.+. +..+..+. .|...|++|.+....+..++++|+.||.|++|..
T Consensus 30 ~~dg~i~iw~~~~~~~~~~~~~~-------~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~ 86 (379)
T 3jrp_A 30 SSDKTIKIFEVEGETHKLIDTLT-------GHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKE 86 (379)
T ss_dssp ETTSCEEEEEEETTEEEEEEEEC-------CCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEE
T ss_pred ECCCcEEEEecCCCcceeeeEec-------CCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEc
Confidence 3589999999984 44444442 2667899999876666788899999999999953
No 62
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=92.88 E-value=0.11 Score=47.48 Aligned_cols=55 Identities=16% Similarity=0.229 Sum_probs=41.1
Q ss_pred cccceEEEEecCCCc--eeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736 3 GLFLKEGIWDHITGS--RLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN 64 (346)
Q Consensus 3 ~~~~~~~~w~~~~~~--~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~ 64 (346)
+.+|+|.|||.+++. .+..+. .|...|+++.+....+..++++|+.||.|++|..
T Consensus 78 s~D~~v~iWd~~~~~~~~~~~~~-------~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~ 134 (316)
T 3bg1_A 78 SYDRKVIIWREENGTWEKSHEHA-------GHDSSVNSVCWAPHDYGLILACGSSDGAISLLTY 134 (316)
T ss_dssp ETTSCEEEECCSSSCCCEEEEEC-------CCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEE
T ss_pred ECCCEEEEEECCCCcceEEEEcc-------CCCCceEEEEECCCCCCcEEEEEcCCCCEEEEec
Confidence 468999999998873 333332 2567899998754444678899999999999953
No 63
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=92.80 E-value=0.11 Score=47.63 Aligned_cols=55 Identities=9% Similarity=0.162 Sum_probs=40.7
Q ss_pred cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736 3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN 64 (346)
Q Consensus 3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~ 64 (346)
+.+|+|.|||+..++....+.-. .|...|+++.+- ++..++++|+.||.|++|..
T Consensus 55 s~D~~v~vW~~~~~~~~~~~~l~-----gh~~~v~~~~~~--~~~~~l~s~s~D~~i~lWd~ 109 (321)
T 3ow8_A 55 SLDDLVKVWKWRDERLDLQWSLE-----GHQLGVVSVDIS--HTLPIAASSSLDAHIRLWDL 109 (321)
T ss_dssp ETTSCEEEEEEETTEEEEEEEEC-----CCSSCEEEEEEC--SSSSEEEEEETTSEEEEEET
T ss_pred cCCCCEEEEECCCCCeeeeeeec-----cCCCCEEEEEEC--CCCCEEEEEeCCCcEEEEEC
Confidence 56899999999877543333212 266788888853 45678899999999999954
No 64
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=92.74 E-value=0.17 Score=46.56 Aligned_cols=53 Identities=11% Similarity=0.232 Sum_probs=42.8
Q ss_pred cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736 3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN 64 (346)
Q Consensus 3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~ 64 (346)
+.+|+|.|||.++++.+..|. .|...|+++.+- ++...+++|+.||.|++|..
T Consensus 95 s~D~~v~lwd~~~~~~~~~~~-------~h~~~v~~v~~s--p~~~~l~s~~~d~~i~~wd~ 147 (343)
T 2xzm_R 95 SWDKTLRLWDLRTGTTYKRFV-------GHQSEVYSVAFS--PDNRQILSAGAEREIKLWNI 147 (343)
T ss_dssp ETTSEEEEEETTSSCEEEEEE-------CCCSCEEEEEEC--SSTTEEEEEETTSCEEEEES
T ss_pred cCCCcEEEEECCCCcEEEEEc-------CCCCcEEEEEEC--CCCCEEEEEcCCCEEEEEec
Confidence 468999999999998887764 256789998863 35667889999999999964
No 65
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=92.72 E-value=0.11 Score=46.74 Aligned_cols=55 Identities=22% Similarity=0.252 Sum_probs=40.8
Q ss_pred cccceEEEEecCCCc--eeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736 3 GLFLKEGIWDHITGS--RLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN 64 (346)
Q Consensus 3 ~~~~~~~~w~~~~~~--~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~ 64 (346)
+.+|+|.|||.++++ .+..+. .|...|+++.+....+..++++|+.||.|++|..
T Consensus 74 s~D~~v~iWd~~~~~~~~~~~~~-------~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~ 130 (297)
T 2pm7_B 74 SYDGKVMIWKEENGRWSQIAVHA-------VHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEF 130 (297)
T ss_dssp ETTTEEEEEEBSSSCBCCCEEEC-------CCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEB
T ss_pred cCCCEEEEEEcCCCceEEEEEee-------cCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEe
Confidence 468999999998774 333331 2566799998765444678899999999999954
No 66
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=92.72 E-value=0.15 Score=48.93 Aligned_cols=54 Identities=13% Similarity=-0.024 Sum_probs=43.9
Q ss_pred cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeCC
Q psy5736 3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNY 65 (346)
Q Consensus 3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~~ 65 (346)
+.+|+|.|||..++..+..|..+ |...|+++.+. +..++++|+.||.|++|..-
T Consensus 217 ~~d~~i~vwd~~~~~~~~~~~~~------h~~~v~~~~~s---d~~~l~s~~~d~~v~vwd~~ 270 (450)
T 2vdu_B 217 DRDEHIKISHYPQCFIVDKWLFG------HKHFVSSICCG---KDYLLLSAGGDDKIFAWDWK 270 (450)
T ss_dssp ETTSCEEEEEESCTTCEEEECCC------CSSCEEEEEEC---STTEEEEEESSSEEEEEETT
T ss_pred cCCCcEEEEECCCCceeeeeecC------CCCceEEEEEC---CCCEEEEEeCCCeEEEEECC
Confidence 46799999999999877765433 55789999876 77888999999999999643
No 67
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=92.67 E-value=0.14 Score=48.33 Aligned_cols=55 Identities=15% Similarity=0.209 Sum_probs=43.9
Q ss_pred cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736 3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN 64 (346)
Q Consensus 3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~ 64 (346)
+.+|+|.|||..+++.+..+.... |...|+++.+ + ++..++++|+.||.|++|..
T Consensus 189 ~~d~~i~iwd~~~~~~~~~~~~~~-----h~~~v~~~~~-s-~~~~~l~s~~~dg~i~iwd~ 243 (437)
T 3gre_A 189 TNLSRVIIFDIRTLERLQIIENSP-----RHGAVSSICI-D-EECCVLILGTTRGIIDIWDI 243 (437)
T ss_dssp ETTSEEEEEETTTCCEEEEEECCG-----GGCCEEEEEE-C-TTSCEEEEEETTSCEEEEET
T ss_pred eCCCeEEEEeCCCCeeeEEEccCC-----CCCceEEEEE-C-CCCCEEEEEcCCCeEEEEEc
Confidence 457999999999998888776431 5568999996 3 34778899999999999954
No 68
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=92.66 E-value=0.13 Score=47.58 Aligned_cols=55 Identities=11% Similarity=0.085 Sum_probs=41.2
Q ss_pred cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEe
Q psy5736 3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYR 63 (346)
Q Consensus 3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r 63 (346)
|.+|+|.|||.+++...+...-.. .|...|+++.+- ++..++++|+.||.+++|.
T Consensus 35 ~~D~~i~iw~~~~~~~~~~~~~~~----~h~~~v~~~~~s--p~g~~l~s~s~D~~v~iw~ 89 (345)
T 3fm0_A 35 GGDRRIRIWGTEGDSWICKSVLSE----GHQRTVRKVAWS--PCGNYLASASFDATTCIWK 89 (345)
T ss_dssp ETTSCEEEEEEETTEEEEEEEECS----SCSSCEEEEEEC--TTSSEEEEEETTSCEEEEE
T ss_pred cCCCeEEEEEcCCCcceeeeeecc----ccCCcEEEEEEC--CCCCEEEEEECCCcEEEEE
Confidence 568999999999886543322111 267789999874 3677889999999999994
No 69
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=92.66 E-value=0.17 Score=48.05 Aligned_cols=51 Identities=20% Similarity=0.214 Sum_probs=42.2
Q ss_pred cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736 3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN 64 (346)
Q Consensus 3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~ 64 (346)
+-+|+|.|||.++++.+..+. .|...|++|.+ ++.++++|+.||.|++|..
T Consensus 150 ~~dg~i~iwd~~~~~~~~~~~-------~h~~~v~~l~~----~~~~l~sg~~dg~i~vwd~ 200 (435)
T 1p22_A 150 LRDNTIKIWDKNTLECKRILT-------GHTGSVLCLQY----DERVIITGSSDSTVRVWDV 200 (435)
T ss_dssp ESSSCEEEEESSSCCEEEEEC-------CCSSCEEEEEC----CSSEEEEEETTSCEEEEES
T ss_pred eCCCeEEEEeCCCCeEEEEEc-------CCCCcEEEEEE----CCCEEEEEcCCCeEEEEEC
Confidence 457999999999998877764 25678999987 6678899999999999954
No 70
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=92.65 E-value=0.18 Score=46.24 Aligned_cols=55 Identities=22% Similarity=0.117 Sum_probs=41.8
Q ss_pred cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeCC
Q psy5736 3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNY 65 (346)
Q Consensus 3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~~ 65 (346)
+.+|+|.|||.++++.+..+... +...++++.+. ++..++++|+.||.|++|..-
T Consensus 146 s~dg~i~~wd~~~~~~~~~~~~~------~~~~i~~~~~~--pdg~~lasg~~dg~i~iwd~~ 200 (343)
T 3lrv_A 146 DNRGTIGFQSYEDDSQYIVHSAK------SDVEYSSGVLH--KDSLLLALYSPDGILDVYNLS 200 (343)
T ss_dssp ETTCCEEEEESSSSCEEEEECCC------SSCCCCEEEEC--TTSCEEEEECTTSCEEEEESS
T ss_pred eCCCcEEEEECCCCcEEEEEecC------CCCceEEEEEC--CCCCEEEEEcCCCEEEEEECC
Confidence 56899999999999876554322 34568888864 367788899999999999543
No 71
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=92.62 E-value=0.17 Score=48.22 Aligned_cols=52 Identities=17% Similarity=0.211 Sum_probs=42.5
Q ss_pred cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736 3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN 64 (346)
Q Consensus 3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~ 64 (346)
+-+|+|.|||.++++.+..+. .|...|+++.+.. +.++++|+.||.|++|..
T Consensus 139 s~dg~i~vwd~~~~~~~~~~~-------~h~~~V~~l~~~~---~~~l~s~s~dg~i~vwd~ 190 (464)
T 3v7d_B 139 ADDKMIRVYDSINKKFLLQLS-------GHDGGVWALKYAH---GGILVSGSTDRTVRVWDI 190 (464)
T ss_dssp ETTSCEEEEETTTTEEEEEEC-------CCSSCEEEEEECS---TTEEEEEETTSCEEEEET
T ss_pred cCCCcEEEEECCCCcEEEEEe-------CCCcCEEEEEEcC---CCEEEEEeCCCCEEEEEC
Confidence 468999999999998888774 2667899999843 238899999999999954
No 72
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=92.56 E-value=0.19 Score=46.20 Aligned_cols=54 Identities=15% Similarity=0.263 Sum_probs=43.2
Q ss_pred cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeCC
Q psy5736 3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNY 65 (346)
Q Consensus 3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~~ 65 (346)
+.+|+|.|||..++..+..|.. |...|+++.+. ++..++++|+.||.|++|..-
T Consensus 203 ~~d~~v~~wd~~~~~~~~~~~~-------h~~~v~~v~~~--p~~~~l~s~s~d~~v~iwd~~ 256 (340)
T 1got_B 203 ACDASAKLWDVREGMCRQTFTG-------HESDINAICFF--PNGNAFATGSDDATCRLFDLR 256 (340)
T ss_dssp ETTSCEEEEETTTCSEEEEECC-------CSSCEEEEEEC--TTSSEEEEEETTSCEEEEETT
T ss_pred eCCCcEEEEECCCCeeEEEEcC-------CcCCEEEEEEc--CCCCEEEEEcCCCcEEEEECC
Confidence 4689999999999988777642 55679998864 356788999999999999643
No 73
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=92.53 E-value=0.18 Score=44.77 Aligned_cols=56 Identities=14% Similarity=0.187 Sum_probs=42.2
Q ss_pred cccceEEEEecCCCc---------eeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeCC
Q psy5736 3 GLFLKEGIWDHITGS---------RLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNY 65 (346)
Q Consensus 3 ~~~~~~~~w~~~~~~---------~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~~ 65 (346)
+.+|+|.|||.+++. .+..+. .|...|+++.+.......++++|+.||.|++|..-
T Consensus 78 ~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~ 142 (351)
T 3f3f_A 78 SYDKTVKLWEEDPDQEECSGRRWNKLCTLN-------DSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDAL 142 (351)
T ss_dssp ETTSCEEEEEECTTSCTTSSCSEEEEEEEC-------CCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECS
T ss_pred cCCCeEEEEecCCCcccccccCcceeeeec-------ccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCC
Confidence 468999999999873 343332 25678999997654447788999999999999643
No 74
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=92.48 E-value=0.14 Score=47.04 Aligned_cols=55 Identities=16% Similarity=0.275 Sum_probs=37.2
Q ss_pred cccceEEEEecCCCc--eeeeeCCCCCCCCCCCC-cccceeccccCCCceEEeeecCCceEEEe
Q psy5736 3 GLFLKEGIWDHITGS--RLISWRPDRGSWARNSA-RCTALTLLNEHDDSLLLTGYDDGSLSVYR 63 (346)
Q Consensus 3 ~~~~~~~~w~~~~~~--~~~~~~~~~~~w~~~~~-~~t~l~~ine~~~~lll~g~~dG~vri~r 63 (346)
|.+|+|.|||..++. .+..... .|.. .|+++.+....+..++++|+.||.|++|.
T Consensus 268 ~~dg~v~iw~~~~~~~~~~~~~~~------~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~ 325 (330)
T 2hes_X 268 GADGVLAVYEEVDGEWKVFAKRAL------CHGVYEINVVKWLELNGKTILATGGDDGIVNFWS 325 (330)
T ss_dssp ETTSCEEEEEEETTEEEEEEEESC------TTTTSCEEEEEEC-----CCEEEEETTSEEEEEE
T ss_pred eCCCEEEEEEcCCCceEEEecccc------ccccceEEEEEEecCCCceEEEEecCCCcEEEEE
Confidence 568999999998773 2322211 2444 78898876545677889999999999995
No 75
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=92.46 E-value=0.18 Score=47.39 Aligned_cols=54 Identities=22% Similarity=0.322 Sum_probs=43.7
Q ss_pred cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736 3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN 64 (346)
Q Consensus 3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~ 64 (346)
|.+|+|.|||.+++.....+... |...|+++.+.. +..++++|+.||.|++|..
T Consensus 110 ~~d~~v~lw~~~~~~~~~~~~~~------~~~~v~~v~~s~--~~~~l~~~~~dg~i~iwd~ 163 (401)
T 4aez_A 110 ALERNVYVWNADSGSVSALAETD------ESTYVASVKWSH--DGSFLSVGLGNGLVDIYDV 163 (401)
T ss_dssp EETTEEEEEETTTCCEEEEEECC------TTCCEEEEEECT--TSSEEEEEETTSCEEEEET
T ss_pred ECCCeEEEeeCCCCcEeEeeecC------CCCCEEEEEECC--CCCEEEEECCCCeEEEEEC
Confidence 57899999999999877666533 456799998754 6678899999999999954
No 76
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=92.45 E-value=0.32 Score=48.35 Aligned_cols=49 Identities=14% Similarity=-0.013 Sum_probs=46.2
Q ss_pred HhccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCCc
Q psy5736 286 QMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGNK 334 (346)
Q Consensus 286 ~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~~ 334 (346)
....|++++|+.++++.|+.+.+++.|.||.+..+...|+..|...|+.
T Consensus 361 y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~ 409 (490)
T 3n71_A 361 LSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHI 409 (490)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCH
Confidence 4567999999999999999999999999999999999999999999985
No 77
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=92.41 E-value=0.15 Score=47.18 Aligned_cols=57 Identities=11% Similarity=0.025 Sum_probs=44.7
Q ss_pred cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeCC
Q psy5736 3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNY 65 (346)
Q Consensus 3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~~ 65 (346)
+-+|+|.|||..++.....+.... |...|+++.+ ++.+..++++|+.||.|++|..-
T Consensus 93 ~~dg~i~iwd~~~~~~~~~~~~~~-----h~~~v~~~~~-~~~~~~~l~s~~~d~~i~iwd~~ 149 (383)
T 3ei3_B 93 SKGGDIILWDYDVQNKTSFIQGMG-----PGDAITGMKF-NQFNTNQLFVSSIRGATTLRDFS 149 (383)
T ss_dssp EBTSCEEEEETTSTTCEEEECCCS-----TTCBEEEEEE-ETTEEEEEEEEETTTEEEEEETT
T ss_pred cCCCeEEEEeCCCcccceeeecCC-----cCCceeEEEe-CCCCCCEEEEEeCCCEEEEEECC
Confidence 357999999999988877765322 6778999996 33466788999999999999544
No 78
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=92.33 E-value=0.21 Score=47.54 Aligned_cols=51 Identities=18% Similarity=0.281 Sum_probs=37.3
Q ss_pred cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736 3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN 64 (346)
Q Consensus 3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~ 64 (346)
+.+|+|.|||..+++.+..+.. |...|+++.+ ++.++++|+.||.|++|..
T Consensus 313 ~~dg~i~iwd~~~~~~~~~~~~-------h~~~v~~~~~----~~~~l~sg~~dg~i~vwd~ 363 (435)
T 1p22_A 313 SSDNTIRLWDIECGACLRVLEG-------HEELVRCIRF----DNKRIVSGAYDGKIKVWDL 363 (435)
T ss_dssp ETTSCEEEEETTTCCEEEEECC-------CSSCEEEEEC----CSSEEEEEETTSCEEEEEH
T ss_pred eCCCeEEEEECCCCCEEEEEeC-------CcCcEEEEEe----cCCEEEEEeCCCcEEEEEC
Confidence 4577888888888877776642 4556788776 5667788888888888853
No 79
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=92.14 E-value=0.23 Score=46.19 Aligned_cols=54 Identities=17% Similarity=0.327 Sum_probs=43.3
Q ss_pred cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeCC
Q psy5736 3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNY 65 (346)
Q Consensus 3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~~ 65 (346)
+.+|+|.|||..+++.+..|. .|...|+++.+. ++..++++|+.||.+++|..-
T Consensus 217 s~Dg~v~~wd~~~~~~~~~~~-------~h~~~v~~v~~~--p~~~~l~s~s~D~~v~lwd~~ 270 (354)
T 2pbi_B 217 GCDKKAMVWDMRSGQCVQAFE-------THESDVNSVRYY--PSGDAFASGSDDATCRLYDLR 270 (354)
T ss_dssp ETTSCEEEEETTTCCEEEEEC-------CCSSCEEEEEEC--TTSSEEEEEETTSCEEEEETT
T ss_pred eCCCeEEEEECCCCcEEEEec-------CCCCCeEEEEEe--CCCCEEEEEeCCCeEEEEECC
Confidence 468999999999998877763 256789998864 356788999999999999643
No 80
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=92.11 E-value=0.21 Score=46.77 Aligned_cols=55 Identities=22% Similarity=0.290 Sum_probs=43.4
Q ss_pred cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736 3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN 64 (346)
Q Consensus 3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~ 64 (346)
+.+|+|.|||.++++.+..+... .|...|+++.+.. ++.++++|+.||.|++|..
T Consensus 151 ~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~ 205 (402)
T 2aq5_A 151 GCDNVILVWDVGTGAAVLTLGPD-----VHPDTIYSVDWSR--DGALICTSCRDKRVRVIEP 205 (402)
T ss_dssp ETTSCEEEEETTTTEEEEEECTT-----TCCSCEEEEEECT--TSSCEEEEETTSEEEEEET
T ss_pred cCCCEEEEEECCCCCccEEEecC-----CCCCceEEEEECC--CCCEEEEEecCCcEEEEeC
Confidence 46899999999999888777411 1567899998653 6678889999999999954
No 81
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=92.08 E-value=0.17 Score=46.74 Aligned_cols=56 Identities=11% Similarity=0.127 Sum_probs=41.5
Q ss_pred cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeCC
Q psy5736 3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNY 65 (346)
Q Consensus 3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~~ 65 (346)
+.+|+|.|||.+++...+...-. .|...|++|.+- +++.++++|+.||.|++|+.+
T Consensus 169 s~d~~i~~w~~~~~~~~~~~~~~-----~h~~~v~~l~~s--p~g~~l~s~s~D~~v~iW~~~ 224 (345)
T 3fm0_A 169 SYDDTVKLYREEEDDWVCCATLE-----GHESTVWSLAFD--PSGQRLASCSDDRTVRIWRQY 224 (345)
T ss_dssp ETTSCEEEEEEETTEEEEEEEEC-----CCSSCEEEEEEC--TTSSEEEEEETTSCEEEEEEE
T ss_pred eCCCcEEEEEecCCCEEEEEEec-----CCCCceEEEEEC--CCCCEEEEEeCCCeEEEeccc
Confidence 45799999999887544322211 266789999864 356788999999999999754
No 82
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=91.95 E-value=0.24 Score=45.39 Aligned_cols=53 Identities=28% Similarity=0.349 Sum_probs=42.8
Q ss_pred cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736 3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN 64 (346)
Q Consensus 3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~ 64 (346)
+.+|+|.|||..+++.+..+.. |...|++|.+- ++..++++|+.||.|++|..
T Consensus 183 ~~dg~i~iwd~~~~~~~~~~~~-------h~~~v~~l~~s--pd~~~l~s~s~dg~i~iwd~ 235 (321)
T 3ow8_A 183 AIDGIINIFDIATGKLLHTLEG-------HAMPIRSLTFS--PDSQLLVTASDDGYIKIYDV 235 (321)
T ss_dssp ETTSCEEEEETTTTEEEEEECC-------CSSCCCEEEEC--TTSCEEEEECTTSCEEEEET
T ss_pred cCCCeEEEEECCCCcEEEEEcc-------cCCceeEEEEc--CCCCEEEEEcCCCeEEEEEC
Confidence 4589999999999988877742 55678998864 36678899999999999964
No 83
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=91.82 E-value=0.27 Score=44.05 Aligned_cols=54 Identities=17% Similarity=0.173 Sum_probs=43.1
Q ss_pred cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeCC
Q psy5736 3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNY 65 (346)
Q Consensus 3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~~ 65 (346)
+.+++|.|||..+++.+..+.. |...|++|.+- +++.++++|+.||.|++|..-
T Consensus 192 ~~d~~i~i~d~~~~~~~~~~~~-------h~~~v~~~~~s--~~~~~l~s~s~Dg~i~iwd~~ 245 (340)
T 4aow_A 192 GWDKLVKVWNLANCKLKTNHIG-------HTGYLNTVTVS--PDGSLCASGGKDGQAMLWDLN 245 (340)
T ss_dssp ETTSCEEEEETTTTEEEEEECC-------CSSCEEEEEEC--TTSSEEEEEETTCEEEEEETT
T ss_pred cCCCEEEEEECCCCceeeEecC-------CCCcEEEEEEC--CCCCEEEEEeCCCeEEEEEec
Confidence 4578999999999988877642 55679998863 467788999999999999543
No 84
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=91.80 E-value=0.092 Score=48.37 Aligned_cols=60 Identities=10% Similarity=0.083 Sum_probs=39.1
Q ss_pred cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736 3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN 64 (346)
Q Consensus 3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~ 64 (346)
+.+|+|.|||..++.....+.........|...|+++.+- ++..++++|+.||.|++|..
T Consensus 46 s~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~--~~~~~l~s~s~D~~v~lwd~ 105 (343)
T 2xzm_R 46 SRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALS--QENCFAISSSWDKTLRLWDL 105 (343)
T ss_dssp ETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEEC--SSTTEEEEEETTSEEEEEET
T ss_pred cCCCEEEEEECCcCCcccccccccchhccCCCceEEEEEC--CCCCEEEEEcCCCcEEEEEC
Confidence 4689999999976532111100000012366789998864 46678899999999999954
No 85
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=91.77 E-value=0.28 Score=46.08 Aligned_cols=55 Identities=7% Similarity=0.195 Sum_probs=40.0
Q ss_pred cccceEEEEecCCCce-----------eeeeCCCCCCCCCCC------------CcccceeccccCCCceEEeeecCCce
Q psy5736 3 GLFLKEGIWDHITGSR-----------LISWRPDRGSWARNS------------ARCTALTLLNEHDDSLLLTGYDDGSL 59 (346)
Q Consensus 3 ~~~~~~~~w~~~~~~~-----------~~~~~~~~~~w~~~~------------~~~t~l~~ine~~~~lll~g~~dG~v 59 (346)
+.+|+|.|||++++.+ +..+.. |. ..|++|.+....+...+++|+.||.|
T Consensus 47 ~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~-------h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i 119 (447)
T 3dw8_B 47 DKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQS-------HEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTI 119 (447)
T ss_dssp ETTSEEEEEEECC-----CCCCCCEEEEEEEEC-------CCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCE
T ss_pred cCCCeEEEEEecCCCCCCcccccceeEeccccc-------ccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeE
Confidence 4689999999998873 444432 44 56999998765444788999999999
Q ss_pred EEEeC
Q psy5736 60 SVYRN 64 (346)
Q Consensus 60 ri~r~ 64 (346)
++|..
T Consensus 120 ~iw~~ 124 (447)
T 3dw8_B 120 KLWKI 124 (447)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 99953
No 86
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=91.73 E-value=0.28 Score=44.23 Aligned_cols=53 Identities=15% Similarity=0.191 Sum_probs=43.1
Q ss_pred cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736 3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN 64 (346)
Q Consensus 3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~ 64 (346)
+.+|+|.|||..+++.+..+.. |...|+++.+.. +..++++|+.||.|++|..
T Consensus 51 ~~dg~i~vwd~~~~~~~~~~~~-------h~~~v~~~~~~~--~~~~l~s~~~dg~i~iwd~ 103 (369)
T 3zwl_B 51 SKDSSASVWYSLNGERLGTLDG-------HTGTIWSIDVDC--FTKYCVTGSADYSIKLWDV 103 (369)
T ss_dssp ESSSCEEEEETTTCCEEEEECC-------CSSCEEEEEECT--TSSEEEEEETTTEEEEEET
T ss_pred eCCCEEEEEeCCCchhhhhhhh-------cCCcEEEEEEcC--CCCEEEEEeCCCeEEEEEC
Confidence 4589999999999988887742 556899998743 5678899999999999954
No 87
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=91.70 E-value=0.24 Score=44.67 Aligned_cols=56 Identities=16% Similarity=0.214 Sum_probs=43.2
Q ss_pred cccceEEEEecCCCc-eeeeeCCCCCCCCCCCCcccceeccc----cCCCceEEeeecCCceEEEeCC
Q psy5736 3 GLFLKEGIWDHITGS-RLISWRPDRGSWARNSARCTALTLLN----EHDDSLLLTGYDDGSLSVYRNY 65 (346)
Q Consensus 3 ~~~~~~~~w~~~~~~-~~~~~~~~~~~w~~~~~~~t~l~~in----e~~~~lll~g~~dG~vri~r~~ 65 (346)
+.+|+|.|||.+++. .+..+. .|...|+++.++. ..+..++++|+.||.|++|..-
T Consensus 87 ~~dg~i~iwd~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~ 147 (357)
T 3i2n_A 87 DFGGNLHIWNLEAPEMPVYSVK-------GHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPR 147 (357)
T ss_dssp ETTSCEEEECTTSCSSCSEEEC-------CCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTT
T ss_pred cCCCeEEEEeCCCCCccEEEEE-------ecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCC
Confidence 458999999999887 555553 2667899998775 2567788999999999999544
No 88
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=91.55 E-value=0.21 Score=45.03 Aligned_cols=53 Identities=11% Similarity=0.152 Sum_probs=40.3
Q ss_pred cccceEEEEecCC-Ccee-eeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736 3 GLFLKEGIWDHIT-GSRL-ISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN 64 (346)
Q Consensus 3 ~~~~~~~~w~~~~-~~~~-~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~ 64 (346)
+-+|+|.|||.++ +..+ ..+. .|...|+++.+.. +..++++|+.||.|++|..
T Consensus 61 ~~dg~i~iw~~~~~~~~~~~~~~-------~h~~~v~~~~~~~--~~~~l~s~~~dg~v~iwd~ 115 (368)
T 3mmy_A 61 SWANDVRCWEVQDSGQTIPKAQQ-------MHTGPVLDVCWSD--DGSKVFTASCDKTAKMWDL 115 (368)
T ss_dssp ETTSEEEEEEECTTSCEEEEEEE-------ECSSCEEEEEECT--TSSEEEEEETTSEEEEEET
T ss_pred CCCCcEEEEEcCCCCceeEEEec-------cccCCEEEEEECc--CCCEEEEEcCCCcEEEEEc
Confidence 4579999999998 5554 2332 2567899998754 6678889999999999954
No 89
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=91.46 E-value=0.24 Score=46.95 Aligned_cols=53 Identities=19% Similarity=0.260 Sum_probs=42.3
Q ss_pred cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736 3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN 64 (346)
Q Consensus 3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~ 64 (346)
+-+|+|.|||..++..+..+.. |...|+++.+. +++.++++|+.||.|++|..
T Consensus 315 s~D~~i~iwd~~~~~~~~~~~~-------h~~~v~~v~~~--~~g~~l~s~s~D~~i~vwd~ 367 (410)
T 1vyh_C 315 SRDKTIKMWDVSTGMCLMTLVG-------HDNWVRGVLFH--SGGKFILSCADDKTLRVWDY 367 (410)
T ss_dssp ETTSEEEEEETTTTEEEEEEEC-------CSSCEEEEEEC--SSSSCEEEEETTTEEEEECC
T ss_pred eCCCeEEEEECCCCceEEEEEC-------CCCcEEEEEEc--CCCCEEEEEeCCCeEEEEEC
Confidence 3578999999999988877642 55678888763 46677899999999999954
No 90
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=91.46 E-value=0.19 Score=50.30 Aligned_cols=55 Identities=7% Similarity=-0.098 Sum_probs=39.9
Q ss_pred cccceEEEEecCCCcee-eeeCCCCCCCCCCCCcccceeccccCCC-ceEEeeecCCceEEEeC
Q psy5736 3 GLFLKEGIWDHITGSRL-ISWRPDRGSWARNSARCTALTLLNEHDD-SLLLTGYDDGSLSVYRN 64 (346)
Q Consensus 3 ~~~~~~~~w~~~~~~~~-~~~~~~~~~w~~~~~~~t~l~~ine~~~-~lll~g~~dG~vri~r~ 64 (346)
+.+|+|.|||.+++... ..+. .|...|+++.+...++. .++++|+.||.+++|..
T Consensus 284 s~DgtV~lWD~~~~~~~~~~~~-------~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~ 340 (524)
T 2j04_B 284 FKNGFVAEFDLTDPEVPSFYDQ-------VHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNP 340 (524)
T ss_dssp ETTSEEEEEETTBCSSCSEEEE-------CSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECG
T ss_pred eCCCEEEEEECCCCCCceEEee-------cccccEEEEEEEcCCCCCeEEEEeccCCeEEEEEC
Confidence 46899999999976432 2231 26678999964333443 78899999999999953
No 91
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=91.43 E-value=0.18 Score=47.24 Aligned_cols=54 Identities=15% Similarity=0.207 Sum_probs=40.1
Q ss_pred cccceEEEEecCCCc-------eeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736 3 GLFLKEGIWDHITGS-------RLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN 64 (346)
Q Consensus 3 ~~~~~~~~w~~~~~~-------~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~ 64 (346)
+-+|+|.|||..++. .+..+ ..|...|+++.+. ++...++++|+.||.|++|..
T Consensus 101 s~dg~v~vw~~~~~~~~~~~~~~~~~~-------~~h~~~v~~~~~~-p~~~~~l~s~~~dg~i~iwd~ 161 (402)
T 2aq5_A 101 SEDCTVMVWEIPDGGLVLPLREPVITL-------EGHTKRVGIVAWH-PTAQNVLLSAGCDNVILVWDV 161 (402)
T ss_dssp ETTSEEEEEECCTTCCSSCBCSCSEEE-------ECCSSCEEEEEEC-SSBTTEEEEEETTSCEEEEET
T ss_pred eCCCeEEEEEccCCCCccccCCceEEe-------cCCCCeEEEEEEC-cCCCCEEEEEcCCCEEEEEEC
Confidence 458999999999873 33333 2366789999864 344468899999999999954
No 92
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=91.42 E-value=0.15 Score=48.06 Aligned_cols=60 Identities=8% Similarity=-0.012 Sum_probs=43.6
Q ss_pred cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceecc------ccCCCceEEeeecCCceEEEeC
Q psy5736 3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLL------NEHDDSLLLTGYDDGSLSVYRN 64 (346)
Q Consensus 3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~i------ne~~~~lll~g~~dG~vri~r~ 64 (346)
+-+++|.|||..++.......-+. ..-|...|.++.|- +..|+.++++|+.|+.+|+|..
T Consensus 108 ~~d~~v~lw~~~~~~~~~~~~~~~--~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~ 173 (393)
T 4gq1_A 108 CQDNTVRLIITKNETIITQHVLGG--KSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRL 173 (393)
T ss_dssp ETTSCEEEEEEETTEEEEEEEECT--TTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEE
T ss_pred eCCCcEEEEECCCCccceeeeecc--cCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEEC
Confidence 358999999999885543211010 12378899999985 3457889999999999999953
No 93
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=91.40 E-value=0.22 Score=46.35 Aligned_cols=56 Identities=16% Similarity=0.128 Sum_probs=42.4
Q ss_pred cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736 3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN 64 (346)
Q Consensus 3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~ 64 (346)
+.+|+|.|||.++++.+..+.... +...++++.+ +++.+.++++|+.||.|++|..
T Consensus 201 ~~dg~v~~wd~~~~~~~~~~~~~~-----~~~~v~~v~~-sp~~~~~la~g~~d~~i~~wd~ 256 (357)
T 4g56_B 201 GEDGRILLWDTRKPKPATRIDFCA-----SDTIPTSVTW-HPEKDDTFACGDETGNVSLVNI 256 (357)
T ss_dssp ETTSCEEECCTTSSSCBCBCCCTT-----CCSCEEEEEE-CTTSTTEEEEEESSSCEEEEES
T ss_pred ccCCceEEEECCCCceeeeeeecc-----ccccccchhh-hhcccceEEEeecccceeEEEC
Confidence 467999999999987776554332 4567888875 4455678889999999999954
No 94
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=91.39 E-value=0.35 Score=48.55 Aligned_cols=60 Identities=13% Similarity=0.142 Sum_probs=45.0
Q ss_pred cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736 3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN 64 (346)
Q Consensus 3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~ 64 (346)
+.+|+|.|||..+++.+..+......-..|...|+++.+- ++..++++|+.||.|++|..
T Consensus 209 s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~s--pdg~~l~s~s~D~~v~lWd~ 268 (611)
T 1nr0_A 209 GGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWS--PDGTKIASASADKTIKIWNV 268 (611)
T ss_dssp ETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEEC--TTSSEEEEEETTSEEEEEET
T ss_pred ECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEEC--CCCCEEEEEeCCCeEEEEeC
Confidence 5689999999999988877643211111367789999874 46678899999999999953
No 95
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=91.35 E-value=0.2 Score=45.58 Aligned_cols=56 Identities=23% Similarity=0.237 Sum_probs=42.8
Q ss_pred cccceEEEEecCCCc--eeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeCC
Q psy5736 3 GLFLKEGIWDHITGS--RLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNY 65 (346)
Q Consensus 3 ~~~~~~~~w~~~~~~--~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~~ 65 (346)
+.+|+|.|||..+++ .+..+. .|...|+++.+....+..++++|+.||.|++|..-
T Consensus 76 ~~dg~v~iwd~~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~ 133 (379)
T 3jrp_A 76 SYDGKVLIWKEENGRWSQIAVHA-------VHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFK 133 (379)
T ss_dssp ETTSCEEEEEEETTEEEEEEEEC-------CCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECC
T ss_pred ccCCEEEEEEcCCCceeEeeeec-------CCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecC
Confidence 457999999999986 444442 25678999997654447788999999999999644
No 96
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=91.28 E-value=0.24 Score=46.54 Aligned_cols=63 Identities=8% Similarity=0.038 Sum_probs=42.8
Q ss_pred CcccceEEEEecCCC-ceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeCC
Q psy5736 2 TGLFLKEGIWDHITG-SRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNY 65 (346)
Q Consensus 2 ~~~~~~~~~w~~~~~-~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~~ 65 (346)
+|-+|+|.|||.+++ ..+..+.........|...|+++.+. ++...++++|+.||.|++|..-
T Consensus 194 s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-p~~~~~l~s~~~dg~i~iwd~~ 257 (447)
T 3dw8_B 194 SADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFH-PNSCNTFVYSSSKGTIRLCDMR 257 (447)
T ss_dssp EECSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEEC-SSCTTEEEEEETTSCEEEEETT
T ss_pred EeCCCeEEEEECCCCCceeeeeecccccccccCcceEEEEEC-CCCCcEEEEEeCCCeEEEEECc
Confidence 356899999999954 44433322222234567789999864 3334788999999999999543
No 97
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=91.22 E-value=0.36 Score=44.25 Aligned_cols=54 Identities=7% Similarity=0.071 Sum_probs=43.6
Q ss_pred cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeCC
Q psy5736 3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNY 65 (346)
Q Consensus 3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~~ 65 (346)
+-+|+|.|||..+++.+..+.. |...|+++.+. ++..++++|+.||.|++|..-
T Consensus 311 ~~~~~i~v~d~~~~~~~~~~~~-------~~~~v~~~~~s--~~~~~l~s~~~dg~i~iw~~~ 364 (408)
T 4a11_B 311 PYGSTIAVYTVYSGEQITMLKG-------HYKTVDCCVFQ--SNFQELYSGSRDCNILAWVPS 364 (408)
T ss_dssp EETTEEEEEETTTCCEEEEECC-------CSSCEEEEEEE--TTTTEEEEEETTSCEEEEEEC
T ss_pred ecCCEEEEEECcCCcceeeecc-------CCCeEEEEEEc--CCCCEEEEECCCCeEEEEeCC
Confidence 3468999999999999888742 55689998865 456788999999999999543
No 98
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=91.16 E-value=0.15 Score=48.23 Aligned_cols=55 Identities=15% Similarity=0.239 Sum_probs=41.5
Q ss_pred cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeCC
Q psy5736 3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNY 65 (346)
Q Consensus 3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~~ 65 (346)
|-+++|.|||..++..+..+.. |...++++.| .+++..++++|+.||.|++|..-
T Consensus 163 s~D~tv~~Wd~~~~~~~~~~~~-------~~~~v~~v~~-~p~~~~~l~~~~~d~~v~~wd~~ 217 (393)
T 4gq1_A 163 GDDCTLIIWRLTDEGPILAGYP-------LSSPGISVQF-RPSNPNQLIVGERNGNIRIFDWT 217 (393)
T ss_dssp ETTSEEEEEEEETTEEEEEEEE-------CSSCEEEEEE-ETTEEEEEEEEETTSEEEEEETT
T ss_pred ECCCeEEEEECCCCceeeeecC-------CCCCcEEEEE-CCCCCceEEecCCCCEEEEEECC
Confidence 5689999999988866654431 4567888886 44455688999999999999543
No 99
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=91.11 E-value=0.32 Score=42.91 Aligned_cols=53 Identities=13% Similarity=0.207 Sum_probs=40.5
Q ss_pred cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeCC
Q psy5736 3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNY 65 (346)
Q Consensus 3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~~ 65 (346)
+.+|+|.|||..+++.+..+.. |...|+++.+.. +.. +++|+.||.|++|..-
T Consensus 243 ~~dg~v~iwd~~~~~~~~~~~~-------~~~~i~~~~~~~--~~~-~~~~~~dg~i~iw~~~ 295 (313)
T 3odt_A 243 GEDRTVRIWSKENGSLKQVITL-------PAISIWSVDCMS--NGD-IIVGSSDNLVRIFSQE 295 (313)
T ss_dssp ETTSEEEEECTTTCCEEEEEEC-------SSSCEEEEEECT--TSC-EEEEETTSCEEEEESC
T ss_pred ecCCEEEEEECCCCceeEEEec-------cCceEEEEEEcc--CCC-EEEEeCCCcEEEEeCC
Confidence 5689999999999988877743 345788888643 223 5779999999999654
No 100
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=91.07 E-value=0.33 Score=42.78 Aligned_cols=55 Identities=13% Similarity=0.012 Sum_probs=43.4
Q ss_pred cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeCCc
Q psy5736 3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNYA 66 (346)
Q Consensus 3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~~~ 66 (346)
+-+|+|.|||.+++.....+.. |...|+++.+.. +..++++|+.||.+++|+...
T Consensus 36 ~~dg~v~vw~~~~~~~~~~~~~-------~~~~v~~~~~~~--~~~~l~~~~~dg~i~~~~~~~ 90 (313)
T 3odt_A 36 SRDGTVRLWSKDDQWLGTVVYT-------GQGFLNSVCYDS--EKELLLFGGKDTMINGVPLFA 90 (313)
T ss_dssp ETTSEEEEEEESSSEEEEEEEE-------CSSCEEEEEEET--TTTEEEEEETTSCEEEEETTC
T ss_pred EcCCcEEEEECCCCEEEEEeec-------CCccEEEEEECC--CCCEEEEecCCCeEEEEEeee
Confidence 4689999999998877766542 456799988753 667889999999999997664
No 101
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=90.87 E-value=0.36 Score=44.43 Aligned_cols=62 Identities=18% Similarity=0.131 Sum_probs=44.2
Q ss_pred cccceEEEEecCCCceeeeeCCCCC--C------------CCCCCCcccceeccccC--------CCceEEeeecCCceE
Q psy5736 3 GLFLKEGIWDHITGSRLISWRPDRG--S------------WARNSARCTALTLLNEH--------DDSLLLTGYDDGSLS 60 (346)
Q Consensus 3 ~~~~~~~~w~~~~~~~~~~~~~~~~--~------------w~~~~~~~t~l~~ine~--------~~~lll~g~~dG~vr 60 (346)
+.+|+|.|||..+++.+..+..... . ...|...|+++.+.... +..++++|+.||.|+
T Consensus 310 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~ 389 (397)
T 1sq9_A 310 GWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIR 389 (397)
T ss_dssp ETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEE
T ss_pred eCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEE
Confidence 4589999999999998888862110 0 01126779999876432 226889999999999
Q ss_pred EEeC
Q psy5736 61 VYRN 64 (346)
Q Consensus 61 i~r~ 64 (346)
+|+.
T Consensus 390 iw~~ 393 (397)
T 1sq9_A 390 WFRE 393 (397)
T ss_dssp EEEE
T ss_pred EEEc
Confidence 9953
No 102
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=90.82 E-value=0.4 Score=44.59 Aligned_cols=56 Identities=14% Similarity=0.271 Sum_probs=43.3
Q ss_pred cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeCC
Q psy5736 3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNY 65 (346)
Q Consensus 3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~~ 65 (346)
+.+|+|.|||..++..+..+... |...|+++.+. ++...++++|+.||.|++|..-
T Consensus 266 ~~dg~i~i~d~~~~~~~~~~~~~------~~~~v~~~~~~-~~~~~~l~~g~~dg~i~vwd~~ 321 (420)
T 3vl1_A 266 HVSGVITVHNVFSKEQTIQLPSK------FTCSCNSLTVD-GNNANYIYAGYENGMLAQWDLR 321 (420)
T ss_dssp ETTSCEEEEETTTCCEEEEECCT------TSSCEEEEEEC-SSCTTEEEEEETTSEEEEEETT
T ss_pred cCCCeEEEEECCCCceeEEcccc------cCCCceeEEEe-CCCCCEEEEEeCCCeEEEEEcC
Confidence 45789999999999888777432 55689999863 3444488999999999999543
No 103
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=90.78 E-value=0.35 Score=43.28 Aligned_cols=57 Identities=14% Similarity=0.265 Sum_probs=39.4
Q ss_pred cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeCC
Q psy5736 3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNY 65 (346)
Q Consensus 3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~~ 65 (346)
+.+|+|.|||..+++.+..|..... ...+... .+...++.++++|+.||.|++|..-
T Consensus 211 ~~d~~i~iwd~~~~~~~~~~~~~~~-----~~~~~~~-~~~~~~~~~l~sg~~dg~i~vwd~~ 267 (312)
T 4ery_A 211 TLDNTLKLWDYSKGKCLKTYTGHKN-----EKYCIFA-NFSVTGGKWIVSGSEDNLVYIWNLQ 267 (312)
T ss_dssp ETTTEEEEEETTTTEEEEEECSSCC-----SSSCCCE-EEECSSSCEEEECCTTSCEEEEETT
T ss_pred cCCCeEEEEECCCCcEEEEEEecCC-----ceEEEEE-EEEeCCCcEEEEECCCCEEEEEECC
Confidence 4689999999999988877753321 1112211 1234567788999999999999643
No 104
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=90.68 E-value=0.43 Score=43.38 Aligned_cols=54 Identities=15% Similarity=0.145 Sum_probs=42.8
Q ss_pred cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeCC
Q psy5736 3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNY 65 (346)
Q Consensus 3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~~ 65 (346)
+-+|+|.+||..+++....|. .|...|+++.+. ++..++++|+.||.|++|..-
T Consensus 173 ~~d~~i~~wd~~~~~~~~~~~-------~h~~~v~~~~~s--p~g~~l~s~~~dg~i~iwd~~ 226 (319)
T 3frx_A 173 GNDKMVKAWNLNQFQIEADFI-------GHNSNINTLTAS--PDGTLIASAGKDGEIMLWNLA 226 (319)
T ss_dssp ETTSCEEEEETTTTEEEEEEC-------CCCSCEEEEEEC--TTSSEEEEEETTCEEEEEETT
T ss_pred eCCCEEEEEECCcchhheeec-------CCCCcEEEEEEc--CCCCEEEEEeCCCeEEEEECC
Confidence 467999999999887776663 256789988863 467788999999999999654
No 105
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=90.56 E-value=0.42 Score=42.75 Aligned_cols=53 Identities=17% Similarity=0.221 Sum_probs=42.2
Q ss_pred cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736 3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN 64 (346)
Q Consensus 3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~ 64 (346)
+.+|+|.|||..++.....+. .|...|+++.+.. +..++++|+.||.|++|..
T Consensus 42 ~~dg~i~iw~~~~~~~~~~~~-------~h~~~v~~~~~~~--~~~~l~s~~~d~~i~vwd~ 94 (312)
T 4ery_A 42 SADKLIKIWGAYDGKFEKTIS-------GHKLGISDVAWSS--DSNLLVSASDDKTLKIWDV 94 (312)
T ss_dssp ETTSCEEEEETTTCCEEEEEC-------CCSSCEEEEEECT--TSSEEEEEETTSEEEEEET
T ss_pred eCCCeEEEEeCCCcccchhhc-------cCCCceEEEEEcC--CCCEEEEECCCCEEEEEEC
Confidence 468999999999887776663 2556799988643 5678899999999999954
No 106
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=90.52 E-value=0.35 Score=44.72 Aligned_cols=55 Identities=13% Similarity=0.153 Sum_probs=43.5
Q ss_pred cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeCC
Q psy5736 3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNY 65 (346)
Q Consensus 3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~~ 65 (346)
+.+|+|.|||..+++.+..+.. |...|+++.+.. +...++++|+.||.|++|..-
T Consensus 282 ~~dg~v~~wd~~~~~~~~~~~~-------~~~~v~~~~~s~-~~~~~l~s~~~d~~i~iw~~~ 336 (416)
T 2pm9_A 282 GRDNTVLLWNPESAEQLSQFPA-------RGNWCFKTKFAP-EAPDLFACASFDNKIEVQTLQ 336 (416)
T ss_dssp ESSSEEEEECSSSCCEEEEEEC-------SSSCCCCEEECT-TCTTEEEECCSSSEEEEEESC
T ss_pred eCCCCEEEeeCCCCccceeecC-------CCCceEEEEECC-CCCCEEEEEecCCcEEEEEcc
Confidence 4579999999999988887752 456788888543 444788999999999999654
No 107
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=90.46 E-value=0.28 Score=50.83 Aligned_cols=54 Identities=7% Similarity=0.032 Sum_probs=42.2
Q ss_pred cccceEEEEecCCC--ceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEe
Q psy5736 3 GLFLKEGIWDHITG--SRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYR 63 (346)
Q Consensus 3 ~~~~~~~~w~~~~~--~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r 63 (346)
|-+|+|.|||.+++ ..+..+. .|...|+++.+....+..++++|+.||.|++|.
T Consensus 28 ~~dg~I~vwd~~~~~~~~~~~l~-------~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd 83 (753)
T 3jro_A 28 SSDKTIKIFEVEGETHKLIDTLT-------GHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK 83 (753)
T ss_dssp ETTTEEEEEEEETTEEEEEEEEC-------CCSSCEEEEEECCTTSCSEEEEEETTSCEEEEE
T ss_pred ECCCcEEEEecCCCCCccceecc-------CCcCceEEEEecCCCCCCEEEEEeCCCeEEEEE
Confidence 46899999999844 4444442 266789999987766678889999999999994
No 108
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=90.43 E-value=0.38 Score=47.03 Aligned_cols=56 Identities=23% Similarity=0.172 Sum_probs=44.3
Q ss_pred cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736 3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN 64 (346)
Q Consensus 3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~ 64 (346)
+.+|+|.|||..+++.+..+..... .|...|+++.+. +..++++|+.||.+++|..
T Consensus 226 ~~dg~i~vwd~~~~~~~~~~~~~~~---~~~~~v~~~~~~---~~~~l~~~~~d~~i~~wd~ 281 (615)
T 1pgu_A 226 GSDRKISCFDGKSGEFLKYIEDDQE---PVQGGIFALSWL---DSQKFATVGADATIRVWDV 281 (615)
T ss_dssp ETTCCEEEEETTTCCEEEECCBTTB---CCCSCEEEEEES---SSSEEEEEETTSEEEEEET
T ss_pred eCCCeEEEEECCCCCEeEEeccccc---ccCCceEEEEEc---CCCEEEEEcCCCcEEEEEC
Confidence 4579999999999998887732100 256789999987 7778899999999999954
No 109
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=90.41 E-value=0.37 Score=44.85 Aligned_cols=59 Identities=14% Similarity=0.266 Sum_probs=41.3
Q ss_pred cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccc-------------------cCCCceEEeeecCCceEEEe
Q psy5736 3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLN-------------------EHDDSLLLTGYDDGSLSVYR 63 (346)
Q Consensus 3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~in-------------------e~~~~lll~g~~dG~vri~r 63 (346)
+.+|+|.|||..+++.+..+..... +...++++.+.. .++..++++|+.||.|++|.
T Consensus 200 ~~d~~v~iwd~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d 275 (420)
T 3vl1_A 200 SLDGTIRLWECGTGTTIHTFNRKEN----PHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHN 275 (420)
T ss_dssp ETTSCEEEEETTTTEEEEEECBTTB----TTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEE
T ss_pred cCCCcEEEeECCCCceeEEeecCCC----CCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEE
Confidence 4689999999999998888864332 233344433321 14567889999999999996
Q ss_pred CC
Q psy5736 64 NY 65 (346)
Q Consensus 64 ~~ 65 (346)
.-
T Consensus 276 ~~ 277 (420)
T 3vl1_A 276 VF 277 (420)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 110
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=90.32 E-value=0.34 Score=44.31 Aligned_cols=55 Identities=13% Similarity=0.142 Sum_probs=40.7
Q ss_pred cccceEEEEecCCC--ceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736 3 GLFLKEGIWDHITG--SRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN 64 (346)
Q Consensus 3 ~~~~~~~~w~~~~~--~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~ 64 (346)
+.+|+|.|||..++ +.+..+. .|...|.++.+-...+..++++|+.||.|++|..
T Consensus 172 s~D~~i~iW~~~~~~~~~~~~~~-------~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~ 228 (330)
T 2hes_X 172 SYDDTVRIWKDYDDDWECVAVLN-------GHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKY 228 (330)
T ss_dssp ETTSCEEEEEEETTEEEEEEEEC-------CCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEE
T ss_pred cCCCeEEEEECCCCCeeEEEEcc-------CCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEe
Confidence 46899999998766 3444442 2567899988755444667889999999999954
No 111
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=89.83 E-value=0.38 Score=46.95 Aligned_cols=51 Identities=14% Similarity=0.239 Sum_probs=40.7
Q ss_pred cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEe
Q psy5736 3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYR 63 (346)
Q Consensus 3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r 63 (346)
+-+|+|.||| .+++.+..+. .|...|++|.|- ++..++++|+.||.|++|.
T Consensus 35 ~~d~~v~iWd-~~~~~~~~l~-------gh~~~V~~l~fs--pdg~~las~~~d~~i~vWd 85 (577)
T 2ymu_A 35 SDDKTVKLWN-RNGQLLQTLT-------GHSSSVWGVAFS--PDGQTIASASDDKTVKLWN 85 (577)
T ss_dssp ETTSEEEEEC-TTSCEEEEEE-------CCSSCEEEEEEC--TTSSEEEEEETTSCEEEEE
T ss_pred eCCCEEEEEE-CCCCEEEEEe-------CCCCCEEEEEEC--CCCCEEEEEeCCCEEEEEE
Confidence 4578999999 5677776663 266789999873 4678889999999999995
No 112
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=89.82 E-value=0.32 Score=45.00 Aligned_cols=56 Identities=14% Similarity=0.271 Sum_probs=40.3
Q ss_pred cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeCC
Q psy5736 3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNY 65 (346)
Q Consensus 3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~~ 65 (346)
+.+|+|.|||..++........- .|...|+++.+- ++..++++|+.||.|++|..-
T Consensus 42 ~~d~~v~iw~~~~~~~~~~~~~~-----~~~~~v~~~~~s--~~~~~l~~~~~dg~v~vw~~~ 97 (416)
T 2pm9_A 42 STDSSLELWSLLAADSEKPIASL-----QVDSKFNDLDWS--HNNKIIAGALDNGSLELYSTN 97 (416)
T ss_dssp CCCCCCEEEESSSGGGCSCSCCC-----CCSSCEEEEEEC--SSSSCEEEEESSSCEEEECCS
T ss_pred CCCCeEEEEEccCCCCCcEEEEE-----ecCCceEEEEEC--CCCCeEEEEccCCeEEEeecc
Confidence 46889999999988633111111 256789999973 466788999999999999544
No 113
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=89.70 E-value=0.41 Score=45.42 Aligned_cols=52 Identities=15% Similarity=0.280 Sum_probs=40.0
Q ss_pred cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeCC
Q psy5736 3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNY 65 (346)
Q Consensus 3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~~ 65 (346)
+.+|+|.|||.++++.+..+. .|...|+++.+ ++..+++|+.||.|++|..-
T Consensus 176 ~~dg~i~vwd~~~~~~~~~~~-------~h~~~v~~~~~----~~~~l~s~s~dg~i~~wd~~ 227 (445)
T 2ovr_B 176 STDRTLKVWNAETGECIHTLY-------GHTSTVRCMHL----HEKRVVSGSRDATLRVWDIE 227 (445)
T ss_dssp ETTSCEEEEETTTTEEEEEEC-------CCSSCEEEEEE----ETTEEEEEETTSEEEEEESS
T ss_pred eCCCeEEEEECCcCcEEEEEC-------CCCCcEEEEEe----cCCEEEEEeCCCEEEEEECC
Confidence 457889999999888777664 25567888886 34567889999999999543
No 114
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=89.69 E-value=0.52 Score=43.09 Aligned_cols=53 Identities=4% Similarity=0.056 Sum_probs=40.3
Q ss_pred cccceEEEEecCCCcee-eeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736 3 GLFLKEGIWDHITGSRL-ISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN 64 (346)
Q Consensus 3 ~~~~~~~~w~~~~~~~~-~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~ 64 (346)
+.+|+|.|||..++..+ ..|.. .|...|++|.|- ++..++++|+ |+.|++|..
T Consensus 189 ~~dg~i~iwd~~~~~~~~~~~~~------~h~~~v~~l~fs--~~g~~l~s~~-~~~v~iwd~ 242 (343)
T 3lrv_A 189 SPDGILDVYNLSSPDQASSRFPV------DEEAKIKEVKFA--DNGYWMVVEC-DQTVVCFDL 242 (343)
T ss_dssp CTTSCEEEEESSCTTSCCEECCC------CTTSCEEEEEEC--TTSSEEEEEE-SSBEEEEET
T ss_pred cCCCEEEEEECCCCCCCccEEec------cCCCCEEEEEEe--CCCCEEEEEe-CCeEEEEEc
Confidence 57899999999999877 55643 166789999974 3566777777 559999954
No 115
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=89.67 E-value=0.49 Score=46.22 Aligned_cols=57 Identities=16% Similarity=0.166 Sum_probs=45.2
Q ss_pred cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccC--------CCceEEeeecCCceEEEeCC
Q psy5736 3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEH--------DDSLLLTGYDDGSLSVYRNY 65 (346)
Q Consensus 3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~--------~~~lll~g~~dG~vri~r~~ 65 (346)
+.+|.|.|||..+++.+..+.. .|...|+++.+.... +..++++|+.||.|++|..-
T Consensus 507 ~~dg~i~iw~~~~~~~~~~~~~------~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~ 571 (615)
T 1pgu_A 507 DVMGKILLYDLQSREVKTSRWA------FRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVK 571 (615)
T ss_dssp ETTSCEEEEETTTTEEEECCSC------CCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESS
T ss_pred CCCCeEEEeeCCCCcceeEeec------CCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECC
Confidence 4689999999999988876532 156789999876522 78899999999999999653
No 116
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=89.26 E-value=0.51 Score=45.09 Aligned_cols=21 Identities=24% Similarity=0.322 Sum_probs=18.9
Q ss_pred cccceEEEEecCCCceeeeeC
Q psy5736 3 GLFLKEGIWDHITGSRLISWR 23 (346)
Q Consensus 3 ~~~~~~~~w~~~~~~~~~~~~ 23 (346)
+.+++|.|||..+|+.+..|.
T Consensus 200 S~D~TIkIWDl~TGk~l~tL~ 220 (356)
T 2w18_A 200 TIMNNIVIWNLKTGQLLKKMH 220 (356)
T ss_dssp ETTSEEEEEETTTCCEEEEEE
T ss_pred cCCCcEEEEECCCCcEEEEEc
Confidence 679999999999999888885
No 117
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=89.25 E-value=0.56 Score=43.44 Aligned_cols=54 Identities=11% Similarity=0.075 Sum_probs=39.2
Q ss_pred cccceEEEEecCCCce----------------eeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCc-eEEEeCC
Q psy5736 3 GLFLKEGIWDHITGSR----------------LISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGS-LSVYRNY 65 (346)
Q Consensus 3 ~~~~~~~~w~~~~~~~----------------~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~-vri~r~~ 65 (346)
+.+|+|.|||..++.. +..+ ..|...|+++.+- ++..++++|+.||. |++|..-
T Consensus 156 ~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~-------~~h~~~v~~~~~s--~~g~~l~s~s~d~~~v~iwd~~ 226 (355)
T 3vu4_A 156 FNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLI-------KAHTNPIKMVRLN--RKSDMVATCSQDGTIIRVFKTE 226 (355)
T ss_dssp SCTTCEEEEECCC------------------CCEEE-------CCCSSCEEEEEEC--TTSSEEEEEETTCSEEEEEETT
T ss_pred CcCcEEEEEECCCCCccccccccccccccCcccEEE-------EccCCceEEEEEC--CCCCEEEEEeCCCCEEEEEECC
Confidence 4678999999998752 2222 2367889999864 36788899999998 9999644
No 118
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=89.24 E-value=0.23 Score=48.05 Aligned_cols=57 Identities=14% Similarity=0.037 Sum_probs=39.9
Q ss_pred cccceEEEEecCCC--------ceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736 3 GLFLKEGIWDHITG--------SRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN 64 (346)
Q Consensus 3 ~~~~~~~~w~~~~~--------~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~ 64 (346)
+-+|+|.|||..++ +.+..+..- ..|+..|++|.+ ++.+..++++|+.||.|++|..
T Consensus 115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~----~~h~~~V~~v~~-~p~~~~~las~s~Dg~v~iwD~ 179 (434)
T 2oit_A 115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLL----KDAGGMVIDMKW-NPTVPSMVAVCLADGSIAVLQV 179 (434)
T ss_dssp TTEEEEEEEEHHHHHCTTCSSCCCSEEEECC----CSGGGSEEEEEE-CSSCTTEEEEEETTSCEEEEEE
T ss_pred CCCceEEEEEccccccCCcCCcceeeeeecc----CCCCCceEEEEE-CCCCCCEEEEEECCCeEEEEEc
Confidence 35899999998765 222222211 236778999986 4455778899999999999954
No 119
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=89.19 E-value=0.51 Score=51.10 Aligned_cols=55 Identities=25% Similarity=0.345 Sum_probs=46.4
Q ss_pred cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736 3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN 64 (346)
Q Consensus 3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~ 64 (346)
+.+|+|.|||+.+++.+..|. .|...++++.+....+..++++|+.||.|++|..
T Consensus 676 ~~d~~v~vwd~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~ 730 (1249)
T 3sfz_A 676 SADKKVKIWDSATGKLVHTYD-------EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDL 730 (1249)
T ss_dssp ETTSEEEEEETTTCCEEEEEE-------CCSSCEEEEEECSSSSCCEEEEEETTSCEEEEET
T ss_pred eCCCeEEEEECCCCceEEEEc-------CCCCcEEEEEEecCCCceEEEEEeCCCeEEEEEC
Confidence 467999999999998888774 2567899999887777888899999999999953
No 120
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=89.10 E-value=0.54 Score=42.61 Aligned_cols=54 Identities=9% Similarity=0.051 Sum_probs=40.6
Q ss_pred cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEe
Q psy5736 3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYR 63 (346)
Q Consensus 3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r 63 (346)
+.+|+|.|||.+++.....+.... |...|+++.+. ++..++++|+.||.+++|.
T Consensus 71 ~~dg~i~vwd~~~~~~~~~~~~~~-----~~~~v~~~~~~--~~~~~l~~~~~d~~v~i~d 124 (372)
T 1k8k_C 71 GTDRNAYVWTLKGRTWKPTLVILR-----INRAARCVRWA--PNEKKFAVGSGSRVISICY 124 (372)
T ss_dssp ETTSCEEEEEEETTEEEEEEECCC-----CSSCEEEEEEC--TTSSEEEEEETTSSEEEEE
T ss_pred cCCCeEEEEECCCCeeeeeEEeec-----CCCceeEEEEC--CCCCEEEEEeCCCEEEEEE
Confidence 457999999999886444443222 56789998865 3567889999999999984
No 121
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=89.10 E-value=0.64 Score=41.64 Aligned_cols=61 Identities=13% Similarity=0.060 Sum_probs=41.9
Q ss_pred cccceEEEEecCCC------ceeeeeCCCCCC--CCCCCCcccceeccccCCCceEEeeecCCceEEEeCC
Q psy5736 3 GLFLKEGIWDHITG------SRLISWRPDRGS--WARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNY 65 (346)
Q Consensus 3 ~~~~~~~~w~~~~~------~~~~~~~~~~~~--w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~~ 65 (346)
+.+|+|.|||+..+ ..+..|...... -..|...|+++.+.. +..++++|+.||.|++|..-
T Consensus 213 ~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~--~~~~l~~~~~dg~i~vwd~~ 281 (342)
T 1yfq_A 213 SIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSP--RHKFLYTAGSDGIISCWNLQ 281 (342)
T ss_dssp ETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECT--TTCCEEEEETTSCEEEEETT
T ss_pred ecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcC--CCCEEEEecCCceEEEEcCc
Confidence 45799999999887 666666543310 001234788887643 56678899999999999643
No 122
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=89.08 E-value=0.47 Score=48.22 Aligned_cols=54 Identities=9% Similarity=0.227 Sum_probs=43.3
Q ss_pred cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeCC
Q psy5736 3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNY 65 (346)
Q Consensus 3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~~ 65 (346)
+.+|+|.|||..++..+..+. .|...|+++.+. ++...+++|+.||.|++|...
T Consensus 449 s~Dg~v~vwd~~~~~~~~~~~-------~h~~~v~~~~~s--~~~~~l~s~s~D~~i~iwd~~ 502 (694)
T 3dm0_A 449 SWDGELRLWDLAAGVSTRRFV-------GHTKDVLSVAFS--LDNRQIVSASRDRTIKLWNTL 502 (694)
T ss_dssp ETTSEEEEEETTTTEEEEEEE-------CCSSCEEEEEEC--TTSSCEEEEETTSCEEEECTT
T ss_pred eCCCcEEEEECCCCcceeEEe-------CCCCCEEEEEEe--CCCCEEEEEeCCCEEEEEECC
Confidence 468999999999998877663 266789998864 456677999999999999643
No 123
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=88.91 E-value=0.4 Score=43.12 Aligned_cols=55 Identities=13% Similarity=0.050 Sum_probs=41.0
Q ss_pred cceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccC-CCceEEeeecCCceEEEeCC
Q psy5736 5 FLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEH-DDSLLLTGYDDGSLSVYRNY 65 (346)
Q Consensus 5 ~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~-~~~lll~g~~dG~vri~r~~ 65 (346)
+|+|.|||.+++........ .|...|+++.+.... +..++++|+.||.|++|..-
T Consensus 43 d~~v~iw~~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 98 (357)
T 3i2n_A 43 TGVIQLYEIQHGDLKLLREI------EKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLE 98 (357)
T ss_dssp CEEEEEEEECSSSEEEEEEE------EESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTT
T ss_pred CcEEEEEeCCCCcccceeee------cccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCC
Confidence 79999999998865443321 155689999876542 36888999999999999543
No 124
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=88.84 E-value=0.54 Score=44.02 Aligned_cols=52 Identities=17% Similarity=0.126 Sum_probs=42.5
Q ss_pred cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeCC
Q psy5736 3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNY 65 (346)
Q Consensus 3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~~ 65 (346)
+.+|+|.|||.++++.+..+. .|...|+++.+ +..++++|+.||.|++|..-
T Consensus 153 ~~dg~i~iwd~~~~~~~~~~~-------~~~~~v~~~~~----~~~~l~~~~~dg~i~i~d~~ 204 (401)
T 4aez_A 153 LGNGLVDIYDVESQTKLRTMA-------GHQARVGCLSW----NRHVLSSGSRSGAIHHHDVR 204 (401)
T ss_dssp ETTSCEEEEETTTCCEEEEEC-------CCSSCEEEEEE----ETTEEEEEETTSEEEEEETT
T ss_pred CCCCeEEEEECcCCeEEEEec-------CCCCceEEEEE----CCCEEEEEcCCCCEEEEecc
Confidence 357999999999998888775 25678999987 34688999999999999654
No 125
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=88.67 E-value=0.45 Score=43.78 Aligned_cols=58 Identities=9% Similarity=-0.083 Sum_probs=41.5
Q ss_pred cccceEEEEecCCCce-----eeeeCCCCCCCCCC--CCcccceecccc--CCCce-EEeeecCCceEEEeC
Q psy5736 3 GLFLKEGIWDHITGSR-----LISWRPDRGSWARN--SARCTALTLLNE--HDDSL-LLTGYDDGSLSVYRN 64 (346)
Q Consensus 3 ~~~~~~~~w~~~~~~~-----~~~~~~~~~~w~~~--~~~~t~l~~ine--~~~~l-ll~g~~dG~vri~r~ 64 (346)
+.+|+|.|||.+++.. +..+.... .+ ...|+++.+... ++... +++|+.||.|++|..
T Consensus 88 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~ 155 (397)
T 1sq9_A 88 SFSGDLLFYRITREDETKKVIFEKLDLLD----SDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKF 155 (397)
T ss_dssp ETTSCEEEEEEEECTTTCCEEEEEECCSC----TTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEE
T ss_pred cCCCCEEEEEccCCcccccccceeecccc----cccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeC
Confidence 4689999999998876 65554321 12 467999998744 45666 899999999999954
No 126
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=88.59 E-value=0.63 Score=47.23 Aligned_cols=58 Identities=5% Similarity=0.075 Sum_probs=42.5
Q ss_pred cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736 3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN 64 (346)
Q Consensus 3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~ 64 (346)
+.+|+|.|||.............. .|...|+++.+.......++++|+.||.|++|..
T Consensus 491 s~D~~i~iwd~~~~~~~~~~~~~~----~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~ 548 (694)
T 3dm0_A 491 SRDRTIKLWNTLGECKYTISEGGE----GHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNL 548 (694)
T ss_dssp ETTSCEEEECTTSCEEEEECSSTT----SCSSCEEEEEECSCSSSCEEEEEETTSCEEEEET
T ss_pred eCCCEEEEEECCCCcceeeccCCC----CCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEEC
Confidence 468999999987665444333222 3677799998765444678899999999999964
No 127
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=88.53 E-value=0.62 Score=42.20 Aligned_cols=53 Identities=11% Similarity=0.115 Sum_probs=42.0
Q ss_pred cccceEEEEecCCCc--eeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736 3 GLFLKEGIWDHITGS--RLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN 64 (346)
Q Consensus 3 ~~~~~~~~w~~~~~~--~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~ 64 (346)
+.+|+|.|||.+++. .+..+. .|...|+++.+.. +..++++|+.||.|++|..
T Consensus 27 ~~d~~v~i~~~~~~~~~~~~~~~-------~h~~~v~~~~~~~--~~~~l~~~~~dg~i~vwd~ 81 (372)
T 1k8k_C 27 PNNHEVHIYEKSGNKWVQVHELK-------EHNGQVTGVDWAP--DSNRIVTCGTDRNAYVWTL 81 (372)
T ss_dssp CSSSEEEEEEEETTEEEEEEEEE-------CCSSCEEEEEEET--TTTEEEEEETTSCEEEEEE
T ss_pred eCCCEEEEEeCCCCcEEeeeeec-------CCCCcccEEEEeC--CCCEEEEEcCCCeEEEEEC
Confidence 368999999999886 666664 2566899998754 6678899999999999954
No 128
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=88.48 E-value=0.63 Score=44.20 Aligned_cols=55 Identities=16% Similarity=0.235 Sum_probs=41.8
Q ss_pred cccceEEEEecCC-CceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeCC
Q psy5736 3 GLFLKEGIWDHIT-GSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNY 65 (346)
Q Consensus 3 ~~~~~~~~w~~~~-~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~~ 65 (346)
+.+|+|.|||..+ +..+..+. .|...|+++.+. ++...++++|+.||.|++|..-
T Consensus 297 ~~dg~v~vwd~~~~~~~~~~~~-------~h~~~v~~i~~s-p~~~~~l~s~~~d~~i~iwd~~ 352 (430)
T 2xyi_A 297 SADKTVALWDLRNLKLKLHSFE-------SHKDEIFQVQWS-PHNETILASSGTDRRLHVWDLS 352 (430)
T ss_dssp ETTSEEEEEETTCTTSCSEEEE-------CCSSCEEEEEEC-SSCTTEEEEEETTSCCEEEEGG
T ss_pred eCCCeEEEEeCCCCCCCeEEee-------cCCCCEEEEEEC-CCCCCEEEEEeCCCcEEEEeCC
Confidence 5689999999987 44555553 255679999864 4566788999999999999654
No 129
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=88.27 E-value=0.73 Score=40.87 Aligned_cols=58 Identities=16% Similarity=0.092 Sum_probs=39.8
Q ss_pred ccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeCC
Q psy5736 4 LFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNY 65 (346)
Q Consensus 4 ~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~~ 65 (346)
-+|+|.|||.+++.....+..-. ...|...++++.+.. +..++++|+.||.+++|..-
T Consensus 70 ~dg~i~iw~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~~~d~~ 127 (337)
T 1gxr_A 70 GKGCVKVWDISHPGNKSPVSQLD--CLNRDNYIRSCKLLP--DGCTLIVGGEASTLSIWDLA 127 (337)
T ss_dssp CBSEEEEEETTSTTCCSCSEEEE--CSCTTSBEEEEEECT--TSSEEEEEESSSEEEEEECC
T ss_pred CCCeEEEEECCCCCceeeeeccc--ccCCCCcEEEEEEcC--CCCEEEEEcCCCcEEEEECC
Confidence 38999999998875333221100 012567899988754 56778889999999999543
No 130
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=87.67 E-value=0.51 Score=44.88 Aligned_cols=62 Identities=13% Similarity=0.085 Sum_probs=41.2
Q ss_pred cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeCC
Q psy5736 3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNY 65 (346)
Q Consensus 3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~~ 65 (346)
+.+|+|.|||..++............+..|...|+++.+. +.+..++++|+.||.|++|..-
T Consensus 201 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~-p~~~~~l~s~~~dg~i~i~d~~ 262 (430)
T 2xyi_A 201 SDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWH-LLHESLFGSVADDQKLMIWDTR 262 (430)
T ss_dssp CTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEEC-SSCTTEEEEEETTSEEEEEETT
T ss_pred eCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEe-CCCCCEEEEEeCCCeEEEEECC
Confidence 4589999999998533211100111122366789999864 3567788899999999999544
No 131
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=87.51 E-value=0.88 Score=41.59 Aligned_cols=54 Identities=17% Similarity=0.074 Sum_probs=42.0
Q ss_pred cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736 3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN 64 (346)
Q Consensus 3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~ 64 (346)
+.+|.|.|||..++..+..+.. |...|+++.+. ++...++++|+.||.|++|..
T Consensus 163 ~~~~~v~~~d~~~~~~~~~~~~-------~~~~v~~~~~~-~~~~~ll~~~~~dg~i~i~d~ 216 (408)
T 4a11_B 163 TRGPKVQLCDLKSGSCSHILQG-------HRQEILAVSWS-PRYDYILATASADSRVKLWDV 216 (408)
T ss_dssp ESSSSEEEEESSSSCCCEEECC-------CCSCEEEEEEC-SSCTTEEEEEETTSCEEEEET
T ss_pred cCCCeEEEEeCCCcceeeeecC-------CCCcEEEEEEC-CCCCcEEEEEcCCCcEEEEEC
Confidence 4578999999999987776642 55679999864 344557889999999999954
No 132
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=87.19 E-value=0.93 Score=41.60 Aligned_cols=59 Identities=15% Similarity=0.199 Sum_probs=37.8
Q ss_pred cccceEEEEec----CCCc------eeeeeCCCCCC---CCCCCCcccceeccccCCCceEEeeecCCceEEEe
Q psy5736 3 GLFLKEGIWDH----ITGS------RLISWRPDRGS---WARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYR 63 (346)
Q Consensus 3 ~~~~~~~~w~~----~~~~------~~~~~~~~~~~---w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r 63 (346)
+.+|+|.|||. +++. ....+...-.. -..|...|+++.+-. +..++++|+.||.|++|.
T Consensus 65 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~i~~ 136 (425)
T 1r5m_A 65 EKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSH--DGNSIVTGVENGELRLWN 136 (425)
T ss_dssp ETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECT--TSSEEEEEETTSCEEEEE
T ss_pred cCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcC--CCCEEEEEeCCCeEEEEe
Confidence 45799999999 8887 44444332211 011456899998753 677889999999999996
No 133
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=86.85 E-value=1.1 Score=39.81 Aligned_cols=54 Identities=15% Similarity=0.196 Sum_probs=42.3
Q ss_pred cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeCC
Q psy5736 3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNY 65 (346)
Q Consensus 3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~~ 65 (346)
+-+|+|.|||.++++.+..+.. |...++++.+.. +..++++|+.||.+++|..-
T Consensus 160 ~~dg~v~~~d~~~~~~~~~~~~-------~~~~i~~~~~~~--~~~~l~~~~~dg~i~~~d~~ 213 (337)
T 1gxr_A 160 CSDGNIAVWDLHNQTLVRQFQG-------HTDGASCIDISN--DGTKLWTGGLDNTVRSWDLR 213 (337)
T ss_dssp ETTSCEEEEETTTTEEEEEECC-------CSSCEEEEEECT--TSSEEEEEETTSEEEEEETT
T ss_pred eCCCcEEEEeCCCCceeeeeec-------ccCceEEEEECC--CCCEEEEEecCCcEEEEECC
Confidence 3578999999999988877742 456788888643 56778899999999999543
No 134
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=86.63 E-value=0.76 Score=42.03 Aligned_cols=55 Identities=13% Similarity=0.030 Sum_probs=37.7
Q ss_pred cccceEEEEecCCCce---eeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeCC
Q psy5736 3 GLFLKEGIWDHITGSR---LISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNY 65 (346)
Q Consensus 3 ~~~~~~~~w~~~~~~~---~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~~ 65 (346)
+.+|+|.|||.+++.. +..+.. .|...|+++.+.. +..++++|+.||.+++|...
T Consensus 119 ~~d~~i~iwd~~~~~~~~~~~~~~~------~h~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~ 176 (377)
T 3dwl_C 119 SGARVISVCYFEQENDWWVSKHLKR------PLRSTILSLDWHP--NNVLLAAGCADRKAYVLSAY 176 (377)
T ss_dssp ESSSCEEECCC-----CCCCEEECS------SCCSCEEEEEECT--TSSEEEEEESSSCEEEEEEC
T ss_pred ecCCeEEEEEECCcccceeeeEeec------ccCCCeEEEEEcC--CCCEEEEEeCCCEEEEEEEE
Confidence 4578999999998864 334432 1567899998754 56788999999999999653
No 135
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=86.56 E-value=0.39 Score=44.00 Aligned_cols=53 Identities=9% Similarity=0.042 Sum_probs=34.2
Q ss_pred cccceEEEEecCCCc---eeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736 3 GLFLKEGIWDHITGS---RLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN 64 (346)
Q Consensus 3 ~~~~~~~~w~~~~~~---~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~ 64 (346)
+.+|+|.|||.+++. ....+. .|...|+++.+.. +..++++|+.||.|++|..
T Consensus 74 s~d~~v~vwd~~~~~~~~~~~~~~-------~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~ 129 (377)
T 3dwl_C 74 SQDRNAYVYEKRPDGTWKQTLVLL-------RLNRAATFVRWSP--NEDKFAVGSGARVISVCYF 129 (377)
T ss_dssp ETTSSEEEC------CCCCEEECC-------CCSSCEEEEECCT--TSSCCEEEESSSCEEECCC
T ss_pred eCCCeEEEEEcCCCCceeeeeEec-------ccCCceEEEEECC--CCCEEEEEecCCeEEEEEE
Confidence 457999999999887 222221 2567899998754 5667788999999999953
No 136
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=86.48 E-value=0.72 Score=47.12 Aligned_cols=52 Identities=17% Similarity=0.215 Sum_probs=42.4
Q ss_pred cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEe
Q psy5736 3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYR 63 (346)
Q Consensus 3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r 63 (346)
+-+|+|.|||++++..+..+.. |...|+++.+.. +..++++|+.||.|++|.
T Consensus 32 ~~~g~v~iwd~~~~~~~~~~~~-------~~~~v~~~~~s~--~~~~l~~~~~dg~i~vw~ 83 (814)
T 3mkq_A 32 LYSGRVEIWNYETQVEVRSIQV-------TETPVRAGKFIA--RKNWIIVGSDDFRIRVFN 83 (814)
T ss_dssp ETTSEEEEEETTTTEEEEEEEC-------CSSCEEEEEEEG--GGTEEEEEETTSEEEEEE
T ss_pred eCCCEEEEEECCCCceEEEEec-------CCCcEEEEEEeC--CCCEEEEEeCCCeEEEEE
Confidence 3578999999999988887752 456799988754 567788999999999994
No 137
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=86.19 E-value=1 Score=45.95 Aligned_cols=52 Identities=12% Similarity=0.306 Sum_probs=41.6
Q ss_pred cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEe
Q psy5736 3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYR 63 (346)
Q Consensus 3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r 63 (346)
+-+|+|.|||+.+++.+..+.. |...|+++.+. ++...+++|+.||.|++|.
T Consensus 74 ~~dg~i~vw~~~~~~~~~~~~~-------~~~~v~~~~~s--~~~~~l~~~~~dg~i~vw~ 125 (814)
T 3mkq_A 74 SDDFRIRVFNYNTGEKVVDFEA-------HPDYIRSIAVH--PTKPYVLSGSDDLTVKLWN 125 (814)
T ss_dssp ETTSEEEEEETTTCCEEEEEEC-------CSSCEEEEEEC--SSSSEEEEEETTSEEEEEE
T ss_pred eCCCeEEEEECCCCcEEEEEec-------CCCCEEEEEEe--CCCCEEEEEcCCCEEEEEE
Confidence 4579999999999988887742 55679998864 3556778999999999994
No 138
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=85.92 E-value=0.71 Score=41.32 Aligned_cols=52 Identities=13% Similarity=-0.025 Sum_probs=39.5
Q ss_pred cccceEEEEec-CCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEe
Q psy5736 3 GLFLKEGIWDH-ITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYR 63 (346)
Q Consensus 3 ~~~~~~~~w~~-~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r 63 (346)
+.+|+|.|||. +++.. ..+... .|...|++|.+.. ..++++|+.||.|++|.
T Consensus 76 ~~dg~i~~wd~~~~~~~-~~~~~~-----~~~~~v~~l~~~~---~~~l~s~~~d~~i~iwd 128 (342)
T 1yfq_A 76 TVQGEILKVDLIGSPSF-QALTNN-----EANLGICRICKYG---DDKLIAASWDGLIEVID 128 (342)
T ss_dssp ETTSCEEEECSSSSSSE-EECBSC-----CCCSCEEEEEEET---TTEEEEEETTSEEEEEC
T ss_pred cCCCeEEEEEeccCCce-Eecccc-----CCCCceEEEEeCC---CCEEEEEcCCCeEEEEc
Confidence 45799999999 87754 333221 1667899999765 67888999999999994
No 139
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=85.90 E-value=1 Score=48.69 Aligned_cols=53 Identities=17% Similarity=0.271 Sum_probs=43.7
Q ss_pred cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736 3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN 64 (346)
Q Consensus 3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~ 64 (346)
|-+|+|.|||..++..+..+. .|...|+++.+- +++.++++|+.||.|++|..
T Consensus 634 ~~d~~i~vw~~~~~~~~~~~~-------~h~~~v~~~~~s--~~~~~l~s~~~d~~v~vwd~ 686 (1249)
T 3sfz_A 634 GADKTLQVFKAETGEKLLDIK-------AHEDEVLCCAFS--SDDSYIATCSADKKVKIWDS 686 (1249)
T ss_dssp ETTSCEEEEETTTCCEEEEEC-------CCSSCEEEEEEC--TTSSEEEEEETTSEEEEEET
T ss_pred eCCCeEEEEECCCCCEEEEec-------cCCCCEEEEEEe--cCCCEEEEEeCCCeEEEEEC
Confidence 567999999999999888775 256789999874 45678899999999999954
No 140
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=85.86 E-value=1.2 Score=40.76 Aligned_cols=54 Identities=15% Similarity=0.130 Sum_probs=42.5
Q ss_pred cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeCC
Q psy5736 3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNY 65 (346)
Q Consensus 3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~~ 65 (346)
+.+|.|.|||..+++.+..+.. |...++++.+. ++..++++|+.||.|++|..-
T Consensus 307 ~~d~~i~i~d~~~~~~~~~~~~-------~~~~i~~~~~s--~~~~~l~~~~~dg~i~i~~~~ 360 (425)
T 1r5m_A 307 SMDGSVRLWSLKQNTLLALSIV-------DGVPIFAGRIS--QDGQKYAVAFMDGQVNVYDLK 360 (425)
T ss_dssp ETTSEEEEEETTTTEEEEEEEC-------TTCCEEEEEEC--TTSSEEEEEETTSCEEEEECH
T ss_pred eCCCcEEEEECCCCcEeEeccc-------CCccEEEEEEc--CCCCEEEEEECCCeEEEEECC
Confidence 5689999999999988877652 44578888753 356788999999999999643
No 141
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=85.63 E-value=1.1 Score=44.81 Aligned_cols=53 Identities=13% Similarity=0.108 Sum_probs=42.0
Q ss_pred cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736 3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN 64 (346)
Q Consensus 3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~ 64 (346)
+-+++|.|||..+++.+..+. .|...|+++.|- +++.++++|+.||.|++|..
T Consensus 167 s~D~~v~lwd~~~~~~~~~l~-------~H~~~V~~v~fs--pdg~~las~s~D~~i~lwd~ 219 (611)
T 1nr0_A 167 SDDNTVAIFEGPPFKFKSTFG-------EHTKFVHSVRYN--PDGSLFASTGGDGTIVLYNG 219 (611)
T ss_dssp ETTSCEEEEETTTBEEEEEEC-------CCSSCEEEEEEC--TTSSEEEEEETTSCEEEEET
T ss_pred eCCCeEEEEECCCCeEeeeec-------cccCceEEEEEC--CCCCEEEEEECCCcEEEEEC
Confidence 457999999998887666653 266789999864 35778899999999999963
No 142
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=85.57 E-value=0.71 Score=47.77 Aligned_cols=55 Identities=24% Similarity=0.254 Sum_probs=42.2
Q ss_pred cccceEEEEecCCCc--eeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736 3 GLFLKEGIWDHITGS--RLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN 64 (346)
Q Consensus 3 ~~~~~~~~w~~~~~~--~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~ 64 (346)
+.+|+|.|||..++. .+..+. .|...|+++.+....+..++++|+.||.|++|..
T Consensus 74 s~Dg~I~vwd~~~~~~~~~~~~~-------~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl 130 (753)
T 3jro_A 74 SYDGKVLIWKEENGRWSQIAVHA-------VHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEF 130 (753)
T ss_dssp ETTSCEEEEEEETTEEEEEEEEC-------CCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEC
T ss_pred eCCCeEEEEECCCCccccccccc-------CCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEe
Confidence 468999999999886 444432 2567899999765444778899999999999954
No 143
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=85.45 E-value=0.79 Score=44.21 Aligned_cols=52 Identities=10% Similarity=0.036 Sum_probs=39.8
Q ss_pred cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEe
Q psy5736 3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYR 63 (346)
Q Consensus 3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r 63 (346)
+.+|+|.|||..++..+.... .|...++++.+- .++.++++|+.||.|++|.
T Consensus 169 s~Dg~v~iwD~~~~~~~~~~~-------~~~~~v~~v~ws--pdg~~lasgs~dg~v~iwd 220 (434)
T 2oit_A 169 LADGSIAVLQVTETVKVCATL-------PSTVAVTSVCWS--PKGKQLAVGKQNGTVVQYL 220 (434)
T ss_dssp ETTSCEEEEEESSSEEEEEEE-------CGGGCEEEEEEC--TTSSCEEEEETTSCEEEEC
T ss_pred ECCCeEEEEEcCCCcceeecc-------CCCCceeEEEEc--CCCCEEEEEcCCCcEEEEc
Confidence 468999999999886554331 156689998863 3477788999999999994
No 144
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=85.15 E-value=1.1 Score=43.74 Aligned_cols=51 Identities=14% Similarity=0.261 Sum_probs=39.8
Q ss_pred cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEe
Q psy5736 3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYR 63 (346)
Q Consensus 3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r 63 (346)
+-+|+|.||| .+++.+..+. .|...|++|.+- ++..++++|+.||.|++|.
T Consensus 486 ~~d~~i~iw~-~~~~~~~~~~-------~h~~~v~~l~~s--~dg~~l~s~~~dg~v~lwd 536 (577)
T 2ymu_A 486 SDDKTVKLWN-RNGQLLQTLT-------GHSSSVRGVAFS--PDGQTIASASDDKTVKLWN 536 (577)
T ss_dssp ETTSEEEEEE-TTSCEEEEEE-------CCSSCEEEEEEC--TTSSCEEEEETTSEEEEEC
T ss_pred eCCCEEEEEc-CCCCEEEEEe-------CCCCCEEEEEEc--CCCCEEEEEECcCEEEEEe
Confidence 4578999999 4566666553 256789999874 4677889999999999996
No 145
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=84.79 E-value=1.1 Score=47.52 Aligned_cols=52 Identities=15% Similarity=0.097 Sum_probs=41.6
Q ss_pred cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736 3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN 64 (346)
Q Consensus 3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~ 64 (346)
+-+++|.|||.++++.+..+. |...|+++.+- ++..++++|+.||.|++|..
T Consensus 76 s~D~~v~lWd~~~~~~~~~~~--------~~~~V~~v~~s--p~g~~l~sgs~dg~V~lwd~ 127 (902)
T 2oaj_A 76 NAKDTVYVLSLYSQKVLTTVF--------VPGKITSIDTD--ASLDWMLIGLQNGSMIVYDI 127 (902)
T ss_dssp ETTCEEEEEETTTCSEEEEEE--------CSSCEEEEECC--TTCSEEEEEETTSCEEEEET
T ss_pred ECcCeEEEEECCCCcEEEEEc--------CCCCEEEEEEC--CCCCEEEEEcCCCcEEEEEC
Confidence 458999999999998887773 23578888863 46677899999999999953
No 146
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=84.74 E-value=0.7 Score=46.06 Aligned_cols=53 Identities=15% Similarity=0.082 Sum_probs=41.6
Q ss_pred cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736 3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN 64 (346)
Q Consensus 3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~ 64 (346)
+-+++|.|||..++..+..+. .|...|+++.+ . ++..++++|+.||.|++|..
T Consensus 374 ~~d~tv~lwd~~~~~~~~~l~-------gH~~~V~sva~-S-p~g~~l~Sgs~Dgtv~lwd~ 426 (524)
T 2j04_B 374 DGASSLRAVPSRAAFAVHPLV-------SRETTITAIGV-S-RLHPMVLAGSADGSLIITNA 426 (524)
T ss_dssp CSSSEEEEEETTCTTCCEEEE-------ECSSCEEEEEC-C-SSCCBCEEEETTTEEECCBS
T ss_pred CCCCcEEEEECcccccceeee-------cCCCceEEEEe-C-CCCCeEEEEECCCEEEEEec
Confidence 457899999999887655553 26678999987 3 46678899999999999954
No 147
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=84.46 E-value=1.6 Score=39.00 Aligned_cols=50 Identities=8% Similarity=0.100 Sum_probs=40.4
Q ss_pred eEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeCC
Q psy5736 7 KEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNY 65 (346)
Q Consensus 7 ~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~~ 65 (346)
.|.+||..+++.+..+.. |...|+++.+.. +..++++|+.||.|++|..-
T Consensus 296 ~i~~~d~~~~~~~~~~~~-------~~~~v~~~~~s~--~~~~l~s~~~dg~v~iw~~~ 345 (369)
T 3zwl_B 296 EARFYHKIFEEEIGRVQG-------HFGPLNTVAISP--QGTSYASGGEDGFIRLHHFE 345 (369)
T ss_dssp EEEEEETTTCCEEEEEEC-------CSSCEEEEEECT--TSSEEEEEETTSEEEEEEEC
T ss_pred eeEEEecCCCcchhheec-------ccCcEEEEEECC--CCCEEEEEcCCCeEEEEECc
Confidence 799999999988887742 456799988643 66788999999999999543
No 148
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=84.32 E-value=0.93 Score=48.20 Aligned_cols=61 Identities=15% Similarity=0.097 Sum_probs=43.2
Q ss_pred cccceEEEEecCCCceeeeeCCCCCCCC-CCCCcccceecc-----cc-CCCceEEeeecCCceEEEeCC
Q psy5736 3 GLFLKEGIWDHITGSRLISWRPDRGSWA-RNSARCTALTLL-----NE-HDDSLLLTGYDDGSLSVYRNY 65 (346)
Q Consensus 3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~-~~~~~~t~l~~i-----ne-~~~~lll~g~~dG~vri~r~~ 65 (346)
+-+|+|.|||.+++..+..... ..|. .|...|++|.|- .. .+...+++|+.||.|++|...
T Consensus 593 s~D~tv~lwd~~~~~~~~~~~~--~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~ 660 (902)
T 2oaj_A 593 YAAGSLMLIDRRGPAIIYMENI--REISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKIL 660 (902)
T ss_dssp ETTSEEEEEETTTTEEEEEEEG--GGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEE
T ss_pred eCCCcEEEEECCCCeEEEEeeh--hHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEe
Confidence 3579999999887765532111 1132 477889999986 32 235788999999999999864
No 149
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=84.27 E-value=1.6 Score=40.56 Aligned_cols=49 Identities=8% Similarity=-0.062 Sum_probs=35.5
Q ss_pred ccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEE
Q psy5736 4 LFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVY 62 (346)
Q Consensus 4 ~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~ 62 (346)
.+++|.|||.++++.+..+. |..+|++|.|- ++..+++++++++.+.+|
T Consensus 155 ~d~~i~iwd~~~~~~~~~~~--------~~~~V~~v~fs--pdg~~l~s~s~~~~~~~~ 203 (365)
T 4h5i_A 155 VPAIMRIIDPSDLTEKFEIE--------TRGEVKDLHFS--TDGKVVAYITGSSLEVIS 203 (365)
T ss_dssp SSCEEEEEETTTTEEEEEEE--------CSSCCCEEEEC--TTSSEEEEECSSCEEEEE
T ss_pred CCCEEEEeECCCCcEEEEeC--------CCCceEEEEEc--cCCceEEeccceeEEEEE
Confidence 57899999999998887663 44579998863 466777777765544443
No 150
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=84.19 E-value=2.1 Score=34.30 Aligned_cols=63 Identities=16% Similarity=0.310 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhcccC---CC-------cHhHHHHHHHHHHHHHHhCCc
Q psy5736 272 KLSELNEMFYRGIEQMNTSCFREAVESLTKFSDQIHELVV---PP-------YKLASLAHEALRNCWSLAGNK 334 (346)
Q Consensus 272 ~l~~~~~~~~~a~~~~~~~~~~~ai~~l~~~l~~~~~~l~---p~-------h~~~~~~~~~L~~~y~~~G~~ 334 (346)
.+..+..+...|...+..|++++|+..|.+.++.+..... |. .+....+...++.||..+|+.
T Consensus 7 ~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~ 79 (162)
T 3rkv_A 7 KLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDL 79 (162)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcH
Confidence 3445666777788889999999999999999988655432 22 556667888899999998874
No 151
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=84.15 E-value=1.7 Score=39.87 Aligned_cols=55 Identities=13% Similarity=0.066 Sum_probs=41.2
Q ss_pred cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736 3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN 64 (346)
Q Consensus 3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~ 64 (346)
+.+|+|.|||.++ ..+..+..... +...++++.+. ++..++++|+.||.|++|..
T Consensus 138 ~~d~~i~iwd~~~-~~~~~~~~~~~----~~~~v~~~~~~--~~~~~l~~~~~d~~i~i~d~ 192 (383)
T 3ei3_B 138 SIRGATTLRDFSG-SVIQVFAKTDS----WDYWYCCVDVS--VSRQMLATGDSTGRLLLLGL 192 (383)
T ss_dssp ETTTEEEEEETTS-CEEEEEECCCC----SSCCEEEEEEE--TTTTEEEEEETTSEEEEEET
T ss_pred eCCCEEEEEECCC-CceEEEeccCC----CCCCeEEEEEC--CCCCEEEEECCCCCEEEEEC
Confidence 4679999999995 45555544432 45678888864 35668899999999999975
No 152
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=83.46 E-value=4.1 Score=34.64 Aligned_cols=53 Identities=11% Similarity=0.049 Sum_probs=47.1
Q ss_pred HHHHHhccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCCc
Q psy5736 282 RGIEQMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGNK 334 (346)
Q Consensus 282 ~a~~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~~ 334 (346)
.+.-.+..|++++|+..+++.++.+.+...+.++....+...|+.+|...|+.
T Consensus 133 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 185 (283)
T 3edt_B 133 LALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKY 185 (283)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCH
Confidence 34445678999999999999999999999999999999999999999999875
No 153
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=82.94 E-value=3.1 Score=31.21 Aligned_cols=43 Identities=16% Similarity=0.070 Sum_probs=30.5
Q ss_pred hccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCCc
Q psy5736 287 MNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGNK 334 (346)
Q Consensus 287 ~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~~ 334 (346)
+..|++++|+..++++++.. |.++....+...++.+|..+|+.
T Consensus 50 ~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~~~~~la~~~~~~g~~ 92 (129)
T 2xev_A 50 YATRNFQLAEAQFRDLVSRY-----PTHDKAAGGLLKLGLSQYGEGKN 92 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-----TTSTTHHHHHHHHHHHHHHTTCH
T ss_pred HHhccHHHHHHHHHHHHHHC-----CCCcccHHHHHHHHHHHHHcCCH
Confidence 45677777777777777653 66666667777788888877765
No 154
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=82.21 E-value=1.9 Score=41.10 Aligned_cols=57 Identities=12% Similarity=-0.059 Sum_probs=41.0
Q ss_pred CcccceEEEEecCC-CceeeeeCCCCCCCCCCCCcccceeccc-cCCCceEEeeecCCceEEEeCC
Q psy5736 2 TGLFLKEGIWDHIT-GSRLISWRPDRGSWARNSARCTALTLLN-EHDDSLLLTGYDDGSLSVYRNY 65 (346)
Q Consensus 2 ~~~~~~~~~w~~~~-~~~~~~~~~~~~~w~~~~~~~t~l~~in-e~~~~lll~g~~dG~vri~r~~ 65 (346)
+|-+++|.+|+... |+.+.... .|..+++.+.|-. +.+..++++|+.|+.||+|..-
T Consensus 153 ~g~d~~V~~~~~s~dG~~~~s~~-------~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~ 211 (356)
T 2w18_A 153 TLSDQQVEVMTFAEDGGGKENQF-------LMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLK 211 (356)
T ss_dssp SSTTCEEEEEEECTTSCEEEEEE-------ECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETT
T ss_pred cCCCCcEEEEEECCCCceeeeec-------cCCCceeeEEeeccCCCCceEEEecCCCcEEEEECC
Confidence 45688999999944 65554332 2556777777666 4667888999999999999654
No 155
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=81.79 E-value=3.3 Score=35.31 Aligned_cols=40 Identities=8% Similarity=-0.093 Sum_probs=18.5
Q ss_pred ccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhC
Q psy5736 288 NTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAG 332 (346)
Q Consensus 288 ~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G 332 (346)
..|++++|+..+.++++.+ |.++....+...+..+|..+|
T Consensus 53 ~~~~~~~A~~~~~~~l~~~-----P~~~~~~~a~~~~g~~~~~~~ 92 (225)
T 2yhc_A 53 KNADLPLAQAAIDRFIRLN-----PTHPNIDYVMYMRGLTNMALD 92 (225)
T ss_dssp HTTCHHHHHHHHHHHHHHC-----TTCTTHHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHC-----cCCCcHHHHHHHHHHHHHhhh
Confidence 3444444444444444432 444444444444555544443
No 156
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=81.57 E-value=4.3 Score=34.45 Aligned_cols=53 Identities=8% Similarity=-0.083 Sum_probs=47.1
Q ss_pred HHHHHhccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCCc
Q psy5736 282 RGIEQMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGNK 334 (346)
Q Consensus 282 ~a~~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~~ 334 (346)
-+.-.+..|++++|++.+.+.++.+.+...+.++....+...|+.+|...|+.
T Consensus 91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 143 (283)
T 3edt_B 91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKA 143 (283)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCH
Confidence 34455678999999999999999999999999999999999999999999875
No 157
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=80.69 E-value=5.7 Score=29.70 Aligned_cols=46 Identities=24% Similarity=0.286 Sum_probs=33.2
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHH
Q psy5736 279 MFYRGIEQMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWS 329 (346)
Q Consensus 279 ~~~~a~~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~ 329 (346)
.+..|.-.+..|++++|+..++++++.+ |.++....++..|...-.
T Consensus 79 ~~~la~~~~~~g~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~l~~l~~ 124 (129)
T 2xev_A 79 LLKLGLSQYGEGKNTEAQQTLQQVATQY-----PGSDAARVAQERLQSIRL 124 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTSHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCChHHHHHHHHHHHHHh
Confidence 3444555577788999999999888865 778877777777766543
No 158
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=79.96 E-value=4.6 Score=31.28 Aligned_cols=47 Identities=11% Similarity=0.094 Sum_probs=25.8
Q ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCCc
Q psy5736 280 FYRGIEQMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGNK 334 (346)
Q Consensus 280 ~~~a~~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~~ 334 (346)
...+...+..|++++|++.|.+.++.- |.++ .+...++.+|..+|+.
T Consensus 17 ~~~G~~~~~~g~~~~A~~~~~~al~~~-----p~~~---~~~~~~~~~~~~~~~~ 63 (126)
T 4gco_A 17 KNKGNEYFKKGDYPTAMRHYNEAVKRD-----PENA---ILYSNRAACLTKLMEF 63 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCH---HHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCH---HHHHHHhhHHHhhccH
Confidence 344555566666666666666666542 3332 3444555566555543
No 159
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=79.85 E-value=3.1 Score=36.04 Aligned_cols=52 Identities=19% Similarity=0.124 Sum_probs=35.2
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCCc
Q psy5736 278 EMFYRGIEQMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGNK 334 (346)
Q Consensus 278 ~~~~~a~~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~~ 334 (346)
.++..|...+..|++++|+..++++++.. |.++....+...|+.+|...|+.
T Consensus 17 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~lg~~~~~~~~~ 68 (261)
T 3qky_A 17 EAFERAMEFYNQGKYDRAIEYFKAVFTYG-----RTHEWAADAQFYLARAYYQNKEY 68 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHGGGC-----SCSTTHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhC-----CCCcchHHHHHHHHHHHHHhCcH
Confidence 45556666677777777777777776644 55666666777777777776654
No 160
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=79.50 E-value=7.1 Score=29.22 Aligned_cols=56 Identities=11% Similarity=-0.013 Sum_probs=41.3
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCCc
Q psy5736 278 EMFYRGIEQMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGNK 334 (346)
Q Consensus 278 ~~~~~a~~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~~ 334 (346)
+.+.-|...++.+++..|+.+++..++.+..--. .-.....+...|+.||..+|+.
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~-~~~~~~~i~~~L~~~~~~~g~~ 62 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEI-STIDKVSVLDYLSYAVYQQGDL 62 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC-CSSCHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCC-CcccHHHHHHHHHHHHHHccCH
Confidence 3445566678889999999999999998754321 1123446678999999999975
No 161
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=79.42 E-value=1.8 Score=41.15 Aligned_cols=56 Identities=14% Similarity=0.003 Sum_probs=42.4
Q ss_pred cccceEEEEecC--CCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeCC
Q psy5736 3 GLFLKEGIWDHI--TGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNY 65 (346)
Q Consensus 3 ~~~~~~~~w~~~--~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~~ 65 (346)
+.+|+|.|||.. ++..+..+.... +...|+++.+- +++.++++|+.||.+.+|...
T Consensus 122 ~~dg~v~iwd~~~~~~~~~~~~~~~~-----~~~~v~~~~~s--p~~~~l~~~~~~g~v~~~~~~ 179 (450)
T 2vdu_B 122 DSDKSLLVFDVDKTSKNVLKLRKRFC-----FSKRPNAISIA--EDDTTVIIADKFGDVYSIDIN 179 (450)
T ss_dssp GGGTEEEEEEECSSSSSCEEEEEEEE-----CSSCEEEEEEC--TTSSEEEEEETTSEEEEEETT
T ss_pred CCCCeEEEEECcCCCCceeeeeeccc-----CCCCceEEEEc--CCCCEEEEEeCCCcEEEEecC
Confidence 367999999999 787776664322 45678898864 356778889999999999654
No 162
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=78.72 E-value=7.2 Score=28.86 Aligned_cols=60 Identities=7% Similarity=0.044 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhcccC--CCcHhHHHHHHHHHHHHHHh
Q psy5736 272 KLSELNEMFYRGIEQMNTSCFREAVESLTKFSDQIHELVV--PPYKLASLAHEALRNCWSLA 331 (346)
Q Consensus 272 ~l~~~~~~~~~a~~~~~~~~~~~ai~~l~~~l~~~~~~l~--p~h~~~~~~~~~L~~~y~~~ 331 (346)
.++++.++..+|++.=+.|++++|+.+|.+.++.+...+. |+...-...+..+...+.+.
T Consensus 7 ~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~~lk~e~d~~~k~~ir~K~~eY~~RA 68 (83)
T 2v6y_A 7 LEDMARKYAILAVKADKEGKVEDAITYYKKAIEVLSQIIVLYPESVARTAYEQMINEYKKRI 68 (83)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 4567778888898888889999999999999998887653 33333444555555555443
No 163
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=78.58 E-value=7.8 Score=33.49 Aligned_cols=53 Identities=11% Similarity=0.102 Sum_probs=47.0
Q ss_pred HHHHHhccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCCc
Q psy5736 282 RGIEQMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGNK 334 (346)
Q Consensus 282 ~a~~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~~ 334 (346)
.+.-.+..|++++|++.+++.++.+.+...+.++....+...|+.+|...|+.
T Consensus 159 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 211 (311)
T 3nf1_A 159 LALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKF 211 (311)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCH
Confidence 34455778999999999999999999988888999999999999999999875
No 164
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=77.15 E-value=7.7 Score=29.41 Aligned_cols=48 Identities=13% Similarity=0.093 Sum_probs=25.6
Q ss_pred HHHHHHhccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCC
Q psy5736 281 YRGIEQMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGN 333 (346)
Q Consensus 281 ~~a~~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~ 333 (346)
..+...+..+++++|++.+++.++. .|.+.....+...++.+|...|+
T Consensus 33 ~~a~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~~~~~a~~~~~~~~ 80 (148)
T 2dba_A 33 KEGNELFKCGDYGGALAAYTQALGL-----DATPQDQAVLHRNRAACHLKLED 80 (148)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHTS-----CCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHH-----cccchHHHHHHHHHHHHHHHHcc
Confidence 3344445556666666666665543 24444444555555555555554
No 165
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=77.11 E-value=7 Score=28.16 Aligned_cols=48 Identities=8% Similarity=-0.004 Sum_probs=26.3
Q ss_pred HHhccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCCc
Q psy5736 285 EQMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGNK 334 (346)
Q Consensus 285 ~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~~ 334 (346)
-.+..|++++|++.+.+.++..... +....+..+...+..++..+|+.
T Consensus 47 ~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~~~~~~~~~~~~~~~~~~ 94 (111)
T 2l6j_A 47 ALIKLGEYTQAIQMCQQGLRYTSTA--EHVAIRSKLQYRLELAQGAVGSV 94 (111)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSCSST--TSHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCCc--cHHHHHHHHHHHHHHHHHHHHhH
Confidence 3345566666666666666432111 12234466666777777777644
No 166
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=76.93 E-value=6.7 Score=29.50 Aligned_cols=41 Identities=15% Similarity=0.051 Sum_probs=20.9
Q ss_pred HhccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCCc
Q psy5736 286 QMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGNK 334 (346)
Q Consensus 286 ~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~~ 334 (346)
.+..|++++|+..+.+.++.. |.+ ..+...++.+|..+|+.
T Consensus 48 ~~~~~~~~~A~~~~~~al~~~-----p~~---~~~~~~lg~~~~~~~~~ 88 (126)
T 3upv_A 48 LAKLMSFPEAIADCNKAIEKD-----PNF---VRAYIRKATAQIAVKEY 88 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-----TTC---HHHHHHHHHHHHHTTCH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-----CCc---HHHHHHHHHHHHHHhCH
Confidence 344555555555555555542 222 23445555666665553
No 167
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=76.33 E-value=8.2 Score=30.60 Aligned_cols=39 Identities=10% Similarity=0.176 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccc
Q psy5736 272 KLSELNEMFYRGIEQMNTSCFREAVESLTKFSDQIHELV 310 (346)
Q Consensus 272 ~l~~~~~~~~~a~~~~~~~~~~~ai~~l~~~l~~~~~~l 310 (346)
.++++..++.+|++.=..+++++|+.+|...++.|...+
T Consensus 14 ~l~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~l~~al 52 (117)
T 2cpt_A 14 NLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVV 52 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHH
Confidence 355677777888877777999999999999999988876
No 168
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=75.56 E-value=9 Score=29.47 Aligned_cols=46 Identities=11% Similarity=-0.059 Sum_probs=32.1
Q ss_pred HHHHHHhccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCCc
Q psy5736 281 YRGIEQMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGNK 334 (346)
Q Consensus 281 ~~a~~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~~ 334 (346)
+.+...+..|++++|++.|.+.++. .|.+. .+...++.+|..+|+.
T Consensus 13 ~lG~~~~~~~~~~~A~~~y~~Al~~-----~p~~~---~~~~nlg~~~~~~~~~ 58 (127)
T 4gcn_A 13 DLGNAAYKQKDFEKAHVHYDKAIEL-----DPSNI---TFYNNKAAVYFEEKKF 58 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH---HHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH---HHHHhHHHHHHHhhhH
Confidence 3455567788888999888888875 34443 3556677777777764
No 169
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=74.74 E-value=5.4 Score=40.51 Aligned_cols=57 Identities=14% Similarity=0.000 Sum_probs=42.0
Q ss_pred cccceEEEEecCCCc-------eeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeCCc
Q psy5736 3 GLFLKEGIWDHITGS-------RLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNYA 66 (346)
Q Consensus 3 ~~~~~~~~w~~~~~~-------~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~~~ 66 (346)
|.+|+|.|||-.++. .+..+.++.. .|...|.++.+-. +. +++++.|+.+++|....
T Consensus 148 s~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~---gh~~~V~sVawSP---dg-Laass~D~tVrlWd~~~ 211 (588)
T 2j04_A 148 NEDGELQFFSIRKNSENTPEFYFESSIRLSDA---GSKDWVTHIVWYE---DV-LVAALSNNSVFSMTVSA 211 (588)
T ss_dssp ETTSEEEEEECCCCTTTCCCCEEEEEEECSCT---TCCCCEEEEEEET---TE-EEEEETTCCEEEECCCS
T ss_pred cCCCEEEEEECCCCccccccceeeeeeecccc---cccccEEEEEEcC---Cc-EEEEeCCCeEEEEECCC
Confidence 678999999999874 2456654443 2567888887763 33 68899999999997654
No 170
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=74.55 E-value=9 Score=33.08 Aligned_cols=55 Identities=7% Similarity=-0.068 Sum_probs=46.8
Q ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCCc
Q psy5736 280 FYRGIEQMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGNK 334 (346)
Q Consensus 280 ~~~a~~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~~ 334 (346)
+..+...+..|++++|+..+.+.++...+...+.++....+...++.+|...|+.
T Consensus 31 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 85 (311)
T 3nf1_A 31 HNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKY 85 (311)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCH
Confidence 3445556778999999999999999998887778888899999999999999875
No 171
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=74.37 E-value=1.8 Score=40.33 Aligned_cols=57 Identities=9% Similarity=0.163 Sum_probs=41.9
Q ss_pred ccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736 4 LFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN 64 (346)
Q Consensus 4 ~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~ 64 (346)
-+++|.|||.++++.+..+... .+..|...++++.+ .++..++++++.||.|++|..
T Consensus 142 ~~~~i~~~d~~~g~~~~~~~~~--~~~~~~~~v~~~~~--~~~~~~~~s~~~d~~v~~~d~ 198 (433)
T 3bws_A 142 EDEGMDVLDINSGQTVRLSPPE--KYKKKLGFVETISI--PEHNELWVSQMQANAVHVFDL 198 (433)
T ss_dssp TSSSEEEEETTTCCEEEECCCH--HHHTTCCEEEEEEE--GGGTEEEEEEGGGTEEEEEET
T ss_pred CCCeEEEEECCCCeEeeecCcc--cccccCCceeEEEE--cCCCEEEEEECCCCEEEEEEC
Confidence 3578999999999777543321 12336678899887 456778889999999999954
No 172
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=73.74 E-value=6.1 Score=33.06 Aligned_cols=62 Identities=10% Similarity=0.060 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhcccCC---Cc-HhHHHHHHHHHHHHHHhCCc
Q psy5736 273 LSELNEMFYRGIEQMNTSCFREAVESLTKFSDQIHELVVP---PY-KLASLAHEALRNCWSLAGNK 334 (346)
Q Consensus 273 l~~~~~~~~~a~~~~~~~~~~~ai~~l~~~l~~~~~~l~p---~h-~~~~~~~~~L~~~y~~~G~~ 334 (346)
+.++..++..+..++..|++++|+..|.+.|+.-...... .| +.-..+...+..++..+|+.
T Consensus 8 ~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~ 73 (159)
T 2hr2_A 8 VVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSF 73 (159)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCH
Confidence 4467777888888999999999999999999887652000 11 12334788888888888864
No 173
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=73.54 E-value=6.7 Score=28.74 Aligned_cols=47 Identities=11% Similarity=0.118 Sum_probs=31.3
Q ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCCc
Q psy5736 280 FYRGIEQMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGNK 334 (346)
Q Consensus 280 ~~~a~~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~~ 334 (346)
+..|...+..|++++|+..+++.++.. |.++ .+...|+.+|..+|+.
T Consensus 11 ~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~~~---~a~~~lg~~~~~~g~~ 57 (100)
T 3ma5_A 11 YALAQEHLKHDNASRALALFEELVETD-----PDYV---GTYYHLGKLYERLDRT 57 (100)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTCT---HHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCcH---HHHHHHHHHHHHcCCH
Confidence 344555567788888888888888764 3333 2566677777777764
No 174
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=72.36 E-value=15 Score=27.23 Aligned_cols=60 Identities=10% Similarity=0.035 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhcccC--CCcHhHHHHHHHHHHHHHH
Q psy5736 271 TKLSELNEMFYRGIEQMNTSCFREAVESLTKFSDQIHELVV--PPYKLASLAHEALRNCWSL 330 (346)
Q Consensus 271 ~~l~~~~~~~~~a~~~~~~~~~~~ai~~l~~~l~~~~~~l~--p~h~~~~~~~~~L~~~y~~ 330 (346)
..++++.+++.+|++.=+.|++++|+.+|.+.++.+...+. |+-..-...+..+...+.+
T Consensus 14 ~~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~alk~e~d~~~k~~ir~K~~eY~~R 75 (83)
T 2w2u_A 14 MLEEMARKYAINAVKADKEGNAEEAITNYKKAIEVLAQLVSLYRDGSTAAIYEQMINEYKRR 75 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSTTSSTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 45677888888999888889999999999999998887543 3333333344445444443
No 175
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=72.17 E-value=4.4 Score=41.17 Aligned_cols=56 Identities=14% Similarity=0.202 Sum_probs=39.2
Q ss_pred cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeCC
Q psy5736 3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNY 65 (346)
Q Consensus 3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~~ 65 (346)
+.+|+|.|||-++ .+..+. ..+ +.....+.++.| .+|+.++++|+.||.|++|..-
T Consensus 104 s~dg~V~iwd~~~--~l~~l~-~~~--~~~~~sv~svaf--SPDG~~LAsgs~DGtVkIWd~~ 159 (588)
T 2j04_A 104 SNNGNVSVFKDNK--MLTNLD-SKG--NLSSRTYHCFEW--NPIESSIVVGNEDGELQFFSIR 159 (588)
T ss_dssp ETTSCEEEEETTE--EEEECC-CSS--CSTTTCEEEEEE--CSSSSCEEEEETTSEEEEEECC
T ss_pred eCCCcEEEEeCCc--eeeecc-CCC--ccccccEEEEEE--cCCCCEEEEEcCCCEEEEEECC
Confidence 5689999999433 666554 321 112345788886 4678888999999999999643
No 176
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=69.55 E-value=14 Score=31.14 Aligned_cols=50 Identities=8% Similarity=0.002 Sum_probs=42.2
Q ss_pred HHHHHHhccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCCcc
Q psy5736 281 YRGIEQMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGNKW 335 (346)
Q Consensus 281 ~~a~~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~~~ 335 (346)
..|.-.+..|++++|+..++++++.+ |.++....+...++.+|..+|+.-
T Consensus 152 ~~a~~~~~~~~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~l~~~~~~~g~~~ 201 (225)
T 2yhc_A 152 SVAEYYTERGAWVAVVNRVEGMLRDY-----PDTQATRDALPLMENAYRQMQMNA 201 (225)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHS-----TTSHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHC-----cCCCccHHHHHHHHHHHHHcCCcH
Confidence 34455677899999999999999987 777888899999999999999864
No 177
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=69.52 E-value=18 Score=29.64 Aligned_cols=61 Identities=13% Similarity=0.126 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhcccCCCcHh----------HHHHHHHHHHHHHHhCCc
Q psy5736 272 KLSELNEMFYRGIEQMNTSCFREAVESLTKFSDQIHELVVPPYKL----------ASLAHEALRNCWSLAGNK 334 (346)
Q Consensus 272 ~l~~~~~~~~~a~~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~----------~~~~~~~L~~~y~~~G~~ 334 (346)
....+..++..|...+..+++++|+..+.+.++..... +.+.. ...+...++.+|..+|+.
T Consensus 34 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 104 (198)
T 2fbn_A 34 KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHT--EEWDDQILLDKKKNIEISCNLNLATCYNKNKDY 104 (198)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTC--TTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc--cccchhhHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 44556667777888889999999999999999876442 11111 136777888888888764
No 178
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=68.81 E-value=20 Score=27.42 Aligned_cols=53 Identities=19% Similarity=0.157 Sum_probs=41.3
Q ss_pred HHHHHHhccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCCc
Q psy5736 281 YRGIEQMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGNK 334 (346)
Q Consensus 281 ~~a~~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~~ 334 (346)
..|.-.+..|++++|++.+.+.++.... ..+.++.+..+...+..+|..+|+.
T Consensus 47 nlg~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~lg~~~~~~~~~ 99 (127)
T 4gcn_A 47 NKAAVYFEEKKFAECVQFCEKAVEVGRE-TRADYKLIAKAMSRAGNAFQKQNDL 99 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHHHHHHHHcCCH
Confidence 4455567789999999999999987654 3456677778888888888888775
No 179
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=68.53 E-value=6.5 Score=35.80 Aligned_cols=53 Identities=4% Similarity=-0.002 Sum_probs=37.9
Q ss_pred cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736 3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN 64 (346)
Q Consensus 3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~ 64 (346)
+-+++|.|||.++++.+..+..+ ..+.++.+ .++...+.++++.||.|++|..
T Consensus 9 ~~d~~v~v~d~~~~~~~~~~~~~--------~~~~~~~~-s~dg~~l~~~~~~d~~i~v~d~ 61 (391)
T 1l0q_A 9 SESDNISVIDVTSNKVTATIPVG--------SNPMGAVI-SPDGTKVYVANAHSNDVSIIDT 61 (391)
T ss_dssp TTTTEEEEEETTTTEEEEEEECS--------SSEEEEEE-CTTSSEEEEEEGGGTEEEEEET
T ss_pred CCCCEEEEEECCCCeEEEEeecC--------CCcceEEE-CCCCCEEEEECCCCCeEEEEEC
Confidence 45799999999999887766422 34677664 3344445577879999999954
No 180
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=67.48 E-value=9.8 Score=27.09 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=11.6
Q ss_pred HHHhccccHHHHHHHHHHHHHH
Q psy5736 284 IEQMNTSCFREAVESLTKFSDQ 305 (346)
Q Consensus 284 ~~~~~~~~~~~ai~~l~~~l~~ 305 (346)
...+..|++++|++.+++.++.
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~ 29 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQT 29 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 3344455555555555555553
No 181
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=66.71 E-value=16 Score=26.07 Aligned_cols=44 Identities=11% Similarity=0.044 Sum_probs=26.6
Q ss_pred HHHHhccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCCc
Q psy5736 283 GIEQMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGNK 334 (346)
Q Consensus 283 a~~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~~ 334 (346)
+.-.+..+++++|+..+.+.++.. |.++ .+...++.+|...|+.
T Consensus 45 a~~~~~~~~~~~A~~~~~~~~~~~-----~~~~---~~~~~~a~~~~~~~~~ 88 (118)
T 1elw_A 45 SAAYAKKGDYQKAYEDGCKTVDLK-----PDWG---KGYSRKAAALEFLNRF 88 (118)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-----TTCH---HHHHHHHHHHHHTTCH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhC-----cccH---HHHHHHHHHHHHHhhH
Confidence 333455677777777777777653 3332 3556677777777664
No 182
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=65.63 E-value=15 Score=28.96 Aligned_cols=40 Identities=18% Similarity=0.016 Sum_probs=19.6
Q ss_pred hccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCCc
Q psy5736 287 MNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGNK 334 (346)
Q Consensus 287 ~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~~ 334 (346)
+..+++++|+..+.+.++.. |.+ ..+...+..+|..+|+.
T Consensus 56 ~~~g~~~~A~~~~~~al~~~-----p~~---~~~~~~lg~~~~~~g~~ 95 (164)
T 3sz7_A 56 SASGQHEKAAEDAELATVVD-----PKY---SKAWSRLGLARFDMADY 95 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-----TTC---HHHHHHHHHHHHHTTCH
T ss_pred HHccCHHHHHHHHHHHHHhC-----CCC---HHHHHHHHHHHHHccCH
Confidence 44455555555555555442 222 23444555555555543
No 183
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=64.74 E-value=19 Score=29.95 Aligned_cols=31 Identities=13% Similarity=0.087 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Q psy5736 276 LNEMFYRGIEQMNTSCFREAVESLTKFSDQI 306 (346)
Q Consensus 276 ~~~~~~~a~~~~~~~~~~~ai~~l~~~l~~~ 306 (346)
++.++.++...++.|++++|+..+.+.++..
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~ 34 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALN 34 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 3456677888899999999999999999764
No 184
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=63.86 E-value=17 Score=29.27 Aligned_cols=23 Identities=13% Similarity=-0.032 Sum_probs=10.3
Q ss_pred HHHHHhccccHHHHHHHHHHHHH
Q psy5736 282 RGIEQMNTSCFREAVESLTKFSD 304 (346)
Q Consensus 282 ~a~~~~~~~~~~~ai~~l~~~l~ 304 (346)
.|...+..|++++|+..|.+.++
T Consensus 42 lg~~~~~~g~~~eA~~~~~~al~ 64 (151)
T 3gyz_A 42 YAYDFYNKGRIEEAEVFFRFLCI 64 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 33334444444444444444443
No 185
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=63.47 E-value=29 Score=25.98 Aligned_cols=45 Identities=18% Similarity=0.126 Sum_probs=20.1
Q ss_pred hccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCC
Q psy5736 287 MNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGN 333 (346)
Q Consensus 287 ~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~ 333 (346)
+..|++++|++.+++.++..... +.......+...++.+|...|+
T Consensus 60 ~~~g~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~ 104 (164)
T 3ro3_A 60 IFLGEFETASEYYKKTLLLARQL--KDRAVEAQSCYSLGNTYTLLQD 104 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHcCCHHHHHHHHHHHHHHHHHh--CCcHHHHHHHHHHHHHHHHHhh
Confidence 34455555555555555444432 2223333344444444444443
No 186
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=63.35 E-value=32 Score=25.83 Aligned_cols=57 Identities=9% Similarity=0.088 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhcccC-CCcHhH-HHHHHHHHHHHH
Q psy5736 273 LSELNEMFYRGIEQMNTSCFREAVESLTKFSDQIHELVV-PPYKLA-SLAHEALRNCWS 329 (346)
Q Consensus 273 l~~~~~~~~~a~~~~~~~~~~~ai~~l~~~l~~~~~~l~-p~h~~~-~~~~~~L~~~y~ 329 (346)
++++.+++.+|++.=..+++++|+.+|...++.|...+. .+.+.. ...+..+...+.
T Consensus 12 l~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~l~~alk~e~~~~~k~~l~~K~~eYl~ 70 (93)
T 1wfd_A 12 STAAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQVLKGTKESSKRCVLRTKISGYMD 70 (93)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 456667778888877789999999999999999988653 344433 223334444333
No 187
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=63.25 E-value=28 Score=25.51 Aligned_cols=58 Identities=12% Similarity=0.079 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhcccC-CCcHhH-HHHHHHHHHHHHH
Q psy5736 273 LSELNEMFYRGIEQMNTSCFREAVESLTKFSDQIHELVV-PPYKLA-SLAHEALRNCWSL 330 (346)
Q Consensus 273 l~~~~~~~~~a~~~~~~~~~~~ai~~l~~~l~~~~~~l~-p~h~~~-~~~~~~L~~~y~~ 330 (346)
++++..++.+|++.=..|++++|+..|...++.|...+. .+.+.. ...+..+...+.+
T Consensus 10 l~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~l~~a~k~e~~~~~k~~l~~k~~eYl~R 69 (85)
T 2v6x_A 10 LTKGIELVQKAIDLDTATQYEEAYTAYYNGLDYLMLALKYEKNPKSKDLIRAKFTEYLNR 69 (85)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 456667777888777789999999999999998887653 233332 3344444444433
No 188
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=63.11 E-value=27 Score=26.15 Aligned_cols=53 Identities=19% Similarity=0.089 Sum_probs=40.7
Q ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCCc
Q psy5736 280 FYRGIEQMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGNK 334 (346)
Q Consensus 280 ~~~a~~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~~ 334 (346)
+..+.-.+..+++++|+..+.+.++...+. +.......+...++.+|...|+.
T Consensus 13 ~~l~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~ 65 (164)
T 3ro3_A 13 GNLGNTHYLLGNFRDAVIAHEQRLLIAKEF--GDKAAERIAYSNLGNAYIFLGEF 65 (164)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHh--CCchHHHHHHHHHHHHHHHcCCH
Confidence 344555567899999999999999988763 44556667888888998888875
No 189
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=62.50 E-value=25 Score=23.94 Aligned_cols=21 Identities=19% Similarity=0.186 Sum_probs=11.4
Q ss_pred HHhccccHHHHHHHHHHHHHH
Q psy5736 285 EQMNTSCFREAVESLTKFSDQ 305 (346)
Q Consensus 285 ~~~~~~~~~~ai~~l~~~l~~ 305 (346)
..+..+++++|+..+.+.++.
T Consensus 18 ~~~~~~~~~~A~~~~~~a~~~ 38 (91)
T 1na3_A 18 AYYKQGDYDEAIEYYQKALEL 38 (91)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHhc
Confidence 334455566666655555543
No 190
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=62.48 E-value=20 Score=27.64 Aligned_cols=13 Identities=15% Similarity=0.179 Sum_probs=6.6
Q ss_pred HHHHHHHHHhCCc
Q psy5736 322 EALRNCWSLAGNK 334 (346)
Q Consensus 322 ~~L~~~y~~~G~~ 334 (346)
..+..+|..+|+.
T Consensus 90 ~~lg~~~~~~g~~ 102 (142)
T 2xcb_A 90 FHAAECHLQLGDL 102 (142)
T ss_dssp HHHHHHHHHTTCH
T ss_pred HHHHHHHHHcCCH
Confidence 4455555555543
No 191
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=62.08 E-value=30 Score=25.03 Aligned_cols=52 Identities=12% Similarity=0.039 Sum_probs=39.1
Q ss_pred HHHHHhccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCCc
Q psy5736 282 RGIEQMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGNK 334 (346)
Q Consensus 282 ~a~~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~~ 334 (346)
.+.-.+..+++++|+..+.+.++..... .+.+.....+...++.+|...|+.
T Consensus 44 la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~ 95 (131)
T 1elr_A 44 QAAVYFEKGDYNKCRELCEKAIEVGREN-REDYRQIAKAYARIGNSYFKEEKY 95 (131)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHHHHHHhccH
Confidence 3444566789999999999999877542 345555677888899999988875
No 192
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=62.03 E-value=18 Score=33.79 Aligned_cols=66 Identities=11% Similarity=0.019 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhcc--------cCCCcHhHHHHHHHHHHHHHHhCCc
Q psy5736 269 IKTKLSELNEMFYRGIEQMNTSCFREAVESLTKFSDQIHEL--------VVPPYKLASLAHEALRNCWSLAGNK 334 (346)
Q Consensus 269 ~~~~l~~~~~~~~~a~~~~~~~~~~~ai~~l~~~l~~~~~~--------l~p~h~~~~~~~~~L~~~y~~~G~~ 334 (346)
....+..+..+...|...+..+++++|++.|.+.++..... .....+....+...|+.+|..+|+.
T Consensus 216 ~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~ 289 (370)
T 1ihg_A 216 VDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDW 289 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCH
Confidence 34456667777788888899999999999999999866542 0013455667788888999888874
No 193
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=61.87 E-value=27 Score=26.79 Aligned_cols=24 Identities=4% Similarity=0.142 Sum_probs=10.7
Q ss_pred HHHHHHhccccHHHHHHHHHHHHH
Q psy5736 281 YRGIEQMNTSCFREAVESLTKFSD 304 (346)
Q Consensus 281 ~~a~~~~~~~~~~~ai~~l~~~l~ 304 (346)
..|...+..|++++|+..+.+.++
T Consensus 18 ~~a~~~~~~~~~~~A~~~~~~al~ 41 (166)
T 1a17_A 18 TQANDYFKAKDYENAIKFYSQAIE 41 (166)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHH
Confidence 333334444444444444444444
No 194
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=60.88 E-value=24 Score=26.14 Aligned_cols=46 Identities=15% Similarity=-0.008 Sum_probs=29.7
Q ss_pred HHHHHHhccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCCc
Q psy5736 281 YRGIEQMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGNK 334 (346)
Q Consensus 281 ~~a~~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~~ 334 (346)
..+.-.+..|++++|+..+++.++.. |.+ ..+...++.+|..+|+.
T Consensus 32 ~lg~~~~~~~~~~~A~~~~~~al~~~-----p~~---~~~~~~l~~~~~~~g~~ 77 (117)
T 3k9i_A 32 GLGSTFRTLGEYRKAEAVLANGVKQF-----PNH---QALRVFYAMVLYNLGRY 77 (117)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC---HHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-----CCc---hHHHHHHHHHHHHcCCH
Confidence 33444566778888888888887763 444 34555677777777664
No 195
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=60.24 E-value=21 Score=26.62 Aligned_cols=41 Identities=12% Similarity=-0.027 Sum_probs=24.4
Q ss_pred HhccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCCc
Q psy5736 286 QMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGNK 334 (346)
Q Consensus 286 ~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~~ 334 (346)
.+..+++++|+..+.+.++.. |.+ ..+...++.+|..+|+.
T Consensus 53 ~~~~~~~~~A~~~~~~al~~~-----p~~---~~~~~~l~~~~~~~~~~ 93 (137)
T 3q49_B 53 YLKMQQPEQALADCRRALELD-----GQS---VKAHFFLGQCQLEMESY 93 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-----TTC---HHHHHHHHHHHHHTTCH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-----chh---HHHHHHHHHHHHHHhhH
Confidence 345566667776666666643 332 23556667777776654
No 196
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=59.92 E-value=13 Score=34.36 Aligned_cols=53 Identities=11% Similarity=0.008 Sum_probs=38.4
Q ss_pred ccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736 4 LFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN 64 (346)
Q Consensus 4 ~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~ 64 (346)
-+|+|.+||.++++.+..+. .|...++++.+ +++...+..+++.||.|++|..
T Consensus 189 ~d~~v~~~d~~~~~~~~~~~-------~~~~~~~~~~~-~~~~~~l~~~~~~~~~i~~~d~ 241 (433)
T 3bws_A 189 QANAVHVFDLKTLAYKATVD-------LTGKWSKILLY-DPIRDLVYCSNWISEDISVIDR 241 (433)
T ss_dssp GGTEEEEEETTTCCEEEEEE-------CSSSSEEEEEE-ETTTTEEEEEETTTTEEEEEET
T ss_pred CCCEEEEEECCCceEEEEEc-------CCCCCeeEEEE-cCCCCEEEEEecCCCcEEEEEC
Confidence 46899999999988877664 14556777764 4444455566778999999954
No 197
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=59.73 E-value=18 Score=28.84 Aligned_cols=45 Identities=16% Similarity=0.086 Sum_probs=33.4
Q ss_pred HHHHHhccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCCc
Q psy5736 282 RGIEQMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGNK 334 (346)
Q Consensus 282 ~a~~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~~ 334 (346)
-|......|++++|++.+++.++. .|.++ .+...|+.+|..+|+.
T Consensus 11 lG~~~~~~g~~~~A~~~~~~al~~-----~p~~~---~~~~~la~~~~~~~~~ 55 (184)
T 3vtx_A 11 IGDKKRTKGDFDGAIRAYKKVLKA-----DPNNV---ETLLKLGKTYMDIGLP 55 (184)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH-----CTTCH---HHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHCCCH
Confidence 344456678999999999999876 35554 4667788888888775
No 198
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=59.43 E-value=27 Score=25.30 Aligned_cols=49 Identities=12% Similarity=0.044 Sum_probs=35.6
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCCc
Q psy5736 278 EMFYRGIEQMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGNK 334 (346)
Q Consensus 278 ~~~~~a~~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~~ 334 (346)
..+..+...+..+++++|+..+.+.++.. |.++ .+...++.+|...|+.
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-----~~~~---~~~~~la~~~~~~~~~ 54 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-----PTNM---TYITNQAAVYFEKGDY 54 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCH---HHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-----CccH---HHHHHHHHHHHHhccH
Confidence 34445566677899999999999999864 3333 4566778888888765
No 199
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=59.17 E-value=19 Score=27.34 Aligned_cols=39 Identities=18% Similarity=-0.009 Sum_probs=21.4
Q ss_pred hccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCC
Q psy5736 287 MNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGN 333 (346)
Q Consensus 287 ~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~ 333 (346)
+..|++++|+..+++.++.- |.+. .+...|+.+|...|+
T Consensus 62 ~~~g~~~~A~~~~~~al~l~-----P~~~---~~~~~la~~~~~~g~ 100 (121)
T 1hxi_A 62 AENEKDGLAIIALNHARMLD-----PKDI---AVHAALAVSHTNEHN 100 (121)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-----TTCH---HHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-----CCCH---HHHHHHHHHHHHcCC
Confidence 44556666666666665542 3333 245566666666554
No 200
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=58.95 E-value=13 Score=33.67 Aligned_cols=52 Identities=13% Similarity=0.136 Sum_probs=37.2
Q ss_pred ccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736 4 LFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN 64 (346)
Q Consensus 4 ~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~ 64 (346)
-+++|.|||.++++.+..+..+ ..++++.+ .++...+.++++.||.|++|..
T Consensus 52 ~d~~i~v~d~~~~~~~~~~~~~--------~~v~~~~~-spdg~~l~~~~~~~~~v~v~d~ 103 (391)
T 1l0q_A 52 HSNDVSIIDTATNNVIATVPAG--------SSPQGVAV-SPDGKQVYVTNMASSTLSVIDT 103 (391)
T ss_dssp GGTEEEEEETTTTEEEEEEECS--------SSEEEEEE-CTTSSEEEEEETTTTEEEEEET
T ss_pred CCCeEEEEECCCCeEEEEEECC--------CCccceEE-CCCCCEEEEEECCCCEEEEEEC
Confidence 5789999999999887766422 26777774 3344445566777899999953
No 201
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=58.43 E-value=25 Score=25.76 Aligned_cols=44 Identities=25% Similarity=0.277 Sum_probs=25.5
Q ss_pred HHHHhccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCCc
Q psy5736 283 GIEQMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGNK 334 (346)
Q Consensus 283 a~~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~~ 334 (346)
|.-.+..|++++|+..+++.++.. |.+ ..+...|+.+|...|+.
T Consensus 26 g~~~~~~g~~~~A~~~~~~al~~~-----p~~---~~~~~~la~~~~~~g~~ 69 (115)
T 2kat_A 26 GKTYAEHEQFDAALPHLRAALDFD-----PTY---SVAWKWLGKTLQGQGDR 69 (115)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-----TTC---HHHHHHHHHHHHHHTCH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHC-----CCc---HHHHHHHHHHHHHcCCH
Confidence 344455677777777777777643 333 23445566666666653
No 202
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=58.04 E-value=30 Score=24.95 Aligned_cols=39 Identities=18% Similarity=0.094 Sum_probs=19.0
Q ss_pred hccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCC
Q psy5736 287 MNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGN 333 (346)
Q Consensus 287 ~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~ 333 (346)
+..+++++|++.+.+.++. .|.+ ..+...++.+|...|+
T Consensus 57 ~~~~~~~~A~~~~~~~~~~-----~~~~---~~~~~~~~~~~~~~~~ 95 (131)
T 2vyi_A 57 SKLGNYAGAVQDCERAICI-----DPAY---SKAYGRMGLALSSLNK 95 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTC
T ss_pred HHhhchHHHHHHHHHHHhc-----CccC---HHHHHHHHHHHHHhCC
Confidence 3445555555555555543 1222 2344455555555554
No 203
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=56.84 E-value=30 Score=24.54 Aligned_cols=50 Identities=14% Similarity=0.137 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCCc
Q psy5736 277 NEMFYRGIEQMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGNK 334 (346)
Q Consensus 277 ~~~~~~a~~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~~ 334 (346)
...+..+...+..|++++|++.+.+.++.. |.++ .+...+..+|..+|+.
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-----p~~~---~~~~~lg~~~~~~g~~ 54 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQ-----PQNP---VGYSNKAMALIKLGEY 54 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-----TTCH---HHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCCH---HHHHHHHHHHHHhcCH
Confidence 345566777788999999999999999863 4443 4566788888888875
No 204
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=56.36 E-value=35 Score=25.26 Aligned_cols=56 Identities=11% Similarity=0.084 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhcccC-CCcHhH-HHHHHHHHHHHHH
Q psy5736 275 ELNEMFYRGIEQMNTSCFREAVESLTKFSDQIHELVV-PPYKLA-SLAHEALRNCWSL 330 (346)
Q Consensus 275 ~~~~~~~~a~~~~~~~~~~~ai~~l~~~l~~~~~~l~-p~h~~~-~~~~~~L~~~y~~ 330 (346)
.+..+..+|++.=..|++++|+..|...++.|-..+. .+.+.. ...+..+...+.+
T Consensus 15 ~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ll~alk~e~d~~~k~~lr~K~~eYl~R 72 (86)
T 4a5x_A 15 AAATVLKRAVELDSESRYPQALVCYQEGIDLLLQVLKGTKDNTKRCNLREKISKYMDR 72 (86)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH
Confidence 3455667788777889999999999999998887653 344433 3344444444433
No 205
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=56.00 E-value=5.8 Score=26.20 Aligned_cols=31 Identities=16% Similarity=0.373 Sum_probs=19.5
Q ss_pred cccccCCcCcCC-cccccccCCcccccCcccccccCCcCC
Q psy5736 227 IRIRCSNDNCGQ-IIATVKKLEPSAKKVEKKCESCNSTSD 265 (346)
Q Consensus 227 ~~~~C~~~~C~g-~~~~~~~~~~~~~~~~~~C~~C~~~~~ 265 (346)
..+.|| .|++ .+..... ...++|..||..+.
T Consensus 4 ~~~~CP--~C~~~~l~~d~~------~gelvC~~CG~v~~ 35 (50)
T 1pft_A 4 KQKVCP--ACESAELIYDPE------RGEIVCAKCGYVIE 35 (50)
T ss_dssp SCCSCT--TTSCCCEEEETT------TTEEEESSSCCBCC
T ss_pred ccEeCc--CCCCcceEEcCC------CCeEECcccCCccc
Confidence 346798 8877 4433321 12489999998654
No 206
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=55.89 E-value=3.3 Score=31.00 Aligned_cols=30 Identities=20% Similarity=0.368 Sum_probs=19.8
Q ss_pred cccccCCcCcCCcccccccCCcccccCcccccccCCcC
Q psy5736 227 IRIRCSNDNCGQIIATVKKLEPSAKKVEKKCESCNSTS 264 (346)
Q Consensus 227 ~~~~C~~~~C~g~~~~~~~~~~~~~~~~~~C~~C~~~~ 264 (346)
..+.|| .|++....... ...|.|..|+..+
T Consensus 26 ~~y~Cp--~CG~~~v~r~a------tGiW~C~~Cg~~~ 55 (83)
T 1vq8_Z 26 EDHACP--NCGEDRVDRQG------TGIWQCSYCDYKF 55 (83)
T ss_dssp SCEECS--SSCCEEEEEEE------TTEEEETTTCCEE
T ss_pred ccCcCC--CCCCcceeccC------CCeEECCCCCCEe
Confidence 567898 89875433221 1249999999864
No 207
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=55.43 E-value=30 Score=27.17 Aligned_cols=40 Identities=10% Similarity=-0.083 Sum_probs=20.3
Q ss_pred hccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCCc
Q psy5736 287 MNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGNK 334 (346)
Q Consensus 287 ~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~~ 334 (346)
...|++++|+..+.+.++.- |.++ .+...+..+|..+|+.
T Consensus 66 ~~~g~~~~A~~~~~~al~l~-----p~~~---~~~~~lg~~~~~~g~~ 105 (148)
T 2vgx_A 66 QAMGQYDLAIHSYSYGAVMD-----IXEP---RFPFHAAECLLQXGEL 105 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-----TTCT---HHHHHHHHHHHHTTCH
T ss_pred HHHhhHHHHHHHHHHHHhcC-----CCCc---hHHHHHHHHHHHcCCH
Confidence 34455555555555555432 3333 2344556666666554
No 208
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=52.50 E-value=34 Score=26.09 Aligned_cols=45 Identities=9% Similarity=-0.006 Sum_probs=28.2
Q ss_pred HHHHHhccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCCc
Q psy5736 282 RGIEQMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGNK 334 (346)
Q Consensus 282 ~a~~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~~ 334 (346)
.|.-.+..|++++|+..+.+.++. .|.+. .+...++.+|..+|+.
T Consensus 53 ~~~~~~~~~~~~~A~~~~~~al~~-----~p~~~---~a~~~lg~~~~~~~~~ 97 (126)
T 4gco_A 53 RAACLTKLMEFQRALDDCDTCIRL-----DSKFI---KGYIRKAACLVAMREW 97 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-----CTTCH---HHHHHHHHHHHHTTCH
T ss_pred HhhHHHhhccHHHHHHHHHHHHHh-----hhhhh---HHHHHHHHHHHHCCCH
Confidence 344455667777777777777764 23333 3556677777777654
No 209
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=52.14 E-value=39 Score=22.90 Aligned_cols=44 Identities=23% Similarity=0.175 Sum_probs=30.5
Q ss_pred HHHHHHhccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhC
Q psy5736 281 YRGIEQMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAG 332 (346)
Q Consensus 281 ~~a~~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G 332 (346)
..+.-.+..+++++|+..+++.++.. |.++ .+...|..++...|
T Consensus 48 ~l~~~~~~~~~~~~A~~~~~~a~~~~-----p~~~---~~~~~l~~~~~~~g 91 (91)
T 1na3_A 48 NLGNAYYKQGDYDEAIEYYQKALELD-----PNNA---EAKQNLGNAKQKQG 91 (91)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCH---HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcC-----CCCH---HHHHHHHHHHHhcC
Confidence 33444567789999999999998863 4443 45567777776654
No 210
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=52.00 E-value=33 Score=30.04 Aligned_cols=53 Identities=9% Similarity=0.056 Sum_probs=41.9
Q ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCCc
Q psy5736 280 FYRGIEQMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGNK 334 (346)
Q Consensus 280 ~~~a~~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~~ 334 (346)
+.-|.-.+..|++++|++++.+.++...+ ...++.+..+...+..+|..+|+.
T Consensus 200 ~nlg~~y~~~~~y~~Al~~~~kal~~~~~--~~~~~~~~~~~~~lg~~y~~~g~~ 252 (293)
T 2qfc_A 200 YNHAKALYLDSRYEESLYQVNKAIEISCR--INSMALIGQLYYQRGECLRKLEYE 252 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHH--TTBCSSHHHHHHHHHHHHHHTTCC
T ss_pred HhHHHHHHHHhhHHHHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHHHHHHcCCc
Confidence 34455567889999999999999988754 345556788889999999999875
No 211
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=51.23 E-value=33 Score=27.21 Aligned_cols=45 Identities=16% Similarity=0.149 Sum_probs=34.3
Q ss_pred HHHHHhccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCCc
Q psy5736 282 RGIEQMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGNK 334 (346)
Q Consensus 282 ~a~~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~~ 334 (346)
.+.-.+..|++++|++.+++.++.. |.++ .+...|+.+|..+|+.
T Consensus 113 lg~~~~~~g~~~~A~~~~~~~l~~~-----p~~~---~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 113 LGLVYDSMGEHDKAIEAYEKTISIK-----PGFI---RAYQSIGLAYEGKGLR 157 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-----TTCH---HHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhCCchhHHHHHHHHHHhc-----chhh---hHHHHHHHHHHHCCCH
Confidence 3445567799999999999999763 5444 4677888999998875
No 212
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=50.46 E-value=41 Score=24.43 Aligned_cols=44 Identities=14% Similarity=0.126 Sum_probs=28.2
Q ss_pred HHHHHhccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCC
Q psy5736 282 RGIEQMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGN 333 (346)
Q Consensus 282 ~a~~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~ 333 (346)
.+.-.+..+++++|++.+++.++.. |.+ ..+...|..+|...|+
T Consensus 90 la~~~~~~~~~~~A~~~~~~~~~~~-----p~~---~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 90 KAAALEAMKDYTKAMDVYQKALDLD-----SSC---KEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-----GGG---THHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhC-----CCc---hHHHHHHHHHHHHhcC
Confidence 3444566778888888888887653 222 3456667777776654
No 213
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=50.27 E-value=40 Score=24.91 Aligned_cols=25 Identities=24% Similarity=0.337 Sum_probs=12.2
Q ss_pred HHHHHHhccccHHHHHHHHHHHHHH
Q psy5736 281 YRGIEQMNTSCFREAVESLTKFSDQ 305 (346)
Q Consensus 281 ~~a~~~~~~~~~~~ai~~l~~~l~~ 305 (346)
..|...+..|++++|+..+.+.++.
T Consensus 9 ~~g~~~~~~~~~~~A~~~~~~al~~ 33 (126)
T 3upv_A 9 LEGKEYFTKSDWPNAVKAYTEMIKR 33 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 3344444455555555555555543
No 214
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=50.21 E-value=63 Score=25.58 Aligned_cols=53 Identities=11% Similarity=-0.007 Sum_probs=39.5
Q ss_pred HHHHHHhccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCCc
Q psy5736 281 YRGIEQMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGNK 334 (346)
Q Consensus 281 ~~a~~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~~ 334 (346)
..+.-.+..|++++|+..+.+.++.+.+. .........+...|..+|...|+.
T Consensus 71 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~lg~~~~~~g~~ 123 (203)
T 3gw4_A 71 QVGMVERMAGNWDAARRCFLEERELLASL-PEDPLAASANAYEVATVALHFGDL 123 (203)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHc-CccHHHHHHHHHHHHHHHHHhCCH
Confidence 33445567899999999999999988743 223446777888888888888874
No 215
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=49.92 E-value=28 Score=25.44 Aligned_cols=46 Identities=9% Similarity=-0.013 Sum_probs=30.8
Q ss_pred HHHHHHhccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCCc
Q psy5736 281 YRGIEQMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGNK 334 (346)
Q Consensus 281 ~~a~~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~~ 334 (346)
..+.-.+..+++++|++.+++.++.. |.+ ..+...++.+|...|+.
T Consensus 55 ~la~~~~~~~~~~~A~~~~~~a~~~~-----~~~---~~~~~~la~~~~~~~~~ 100 (133)
T 2lni_A 55 NRAACYTKLLEFQLALKDCEECIQLE-----PTF---IKGYTRKAAALEAMKDY 100 (133)
T ss_dssp HHHHHHTTTTCHHHHHHHHHHHHHHC-----TTC---HHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC-----CCc---hHHHHHHHHHHHHHhhH
Confidence 34444566778888888888888753 333 34566778888887764
No 216
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=49.84 E-value=55 Score=27.87 Aligned_cols=52 Identities=13% Similarity=0.013 Sum_probs=34.0
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHhhcccCCCcH-hHHHHHHHHHHHHHHhCCc
Q psy5736 278 EMFYRGIEQMNTSCFREAVESLTKFSDQIHELVVPPYK-LASLAHEALRNCWSLAGNK 334 (346)
Q Consensus 278 ~~~~~a~~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~-~~~~~~~~L~~~y~~~G~~ 334 (346)
.++..|...+..|++++|+..+++.++. .|.++ ....+...++.+|...|+.
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~l~~~~~~~g~~ 59 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQV-----GTEDLKTLSAIYSQLGNAYFYLHDY 59 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CCSCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhh-----CcccHHHHHHHHHHHHHHHHHcCCH
Confidence 3445566667778888888888888775 23333 3455666777777777664
No 217
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=49.45 E-value=48 Score=30.00 Aligned_cols=45 Identities=9% Similarity=0.104 Sum_probs=24.6
Q ss_pred hccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCC
Q psy5736 287 MNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGN 333 (346)
Q Consensus 287 ~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~ 333 (346)
...|++++|++.+.+.++...+. +.++....+...|..+|...|+
T Consensus 195 ~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~lg~~y~~~g~ 239 (383)
T 3ulq_A 195 LDLKQYEDAISHFQKAYSMAEAE--KQPQLMGRTLYNIGLCKNSQSQ 239 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHhcCHHHHHHHHHHHHHHHHHc--CChHHHHHHHHHHHHHHHHCCC
Confidence 34455666666666666555543 3344455555555555555554
No 218
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=49.31 E-value=37 Score=26.52 Aligned_cols=46 Identities=13% Similarity=-0.086 Sum_probs=27.6
Q ss_pred HHHHHHhccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCCc
Q psy5736 281 YRGIEQMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGNK 334 (346)
Q Consensus 281 ~~a~~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~~ 334 (346)
..|.-.+..|++++|+..+.+.++. .|.+ ..+...++.+|..+|+.
T Consensus 68 nla~~~~~~~~~~~A~~~~~~al~~-----~p~~---~~a~~~~g~~~~~~g~~ 113 (162)
T 3rkv_A 68 NMSQCYLNIGDLHEAEETSSEVLKR-----EETN---EKALFRRAKARIAAWKL 113 (162)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH-----STTC---HHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhc-----CCcc---hHHHHHHHHHHHHHhcH
Confidence 3444455667777777777777765 2333 24556666666666654
No 219
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=49.07 E-value=26 Score=29.94 Aligned_cols=49 Identities=12% Similarity=0.081 Sum_probs=38.8
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhC
Q psy5736 279 MFYRGIEQMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAG 332 (346)
Q Consensus 279 ~~~~a~~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G 332 (346)
.+..|.-.+..|++++|+..++++++.+ |.++....+...+..+|...|
T Consensus 55 ~~~lg~~~~~~~~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~lg~~~~~~~ 103 (261)
T 3qky_A 55 QFYLARAYYQNKEYLLAASEYERFIQIY-----QIDPRVPQAEYERAMCYYKLS 103 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCTTHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHHC-----CCCchhHHHHHHHHHHHHHhc
Confidence 3445556677899999999999999876 667777788888888888743
No 220
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=48.96 E-value=51 Score=29.78 Aligned_cols=55 Identities=16% Similarity=0.036 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhcccCCCcH-hHHHHHHHHHHHHHHhCCc
Q psy5736 275 ELNEMFYRGIEQMNTSCFREAVESLTKFSDQIHELVVPPYK-LASLAHEALRNCWSLAGNK 334 (346)
Q Consensus 275 ~~~~~~~~a~~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~-~~~~~~~~L~~~y~~~G~~ 334 (346)
.+..++..+...+..|++++|+..+++.++. .|.++ ....+...+..+|...|+.
T Consensus 47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~lg~~~~~~g~~ 102 (411)
T 4a1s_A 47 MCLELALEGERLCNAGDCRAGVAFFQAAIQA-----GTEDLRTLSAIYSQLGNAYFYLGDY 102 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CCSCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh-----cccChhHHHHHHHHHHHHHHHCCCH
Confidence 3445556677778889999999999999886 34444 3556778888888888765
No 221
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=48.22 E-value=46 Score=30.91 Aligned_cols=30 Identities=7% Similarity=0.045 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHH
Q psy5736 276 LNEMFYRGIEQMNTSCFREAVESLTKFSDQ 305 (346)
Q Consensus 276 ~~~~~~~a~~~~~~~~~~~ai~~l~~~l~~ 305 (346)
+..++..|...+..|++++|+..|.+.++.
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~ 35 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALEL 35 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence 344444555555556666666666666554
No 222
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=48.13 E-value=54 Score=30.59 Aligned_cols=53 Identities=23% Similarity=0.226 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHH
Q psy5736 276 LNEMFYRGIEQMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCW 328 (346)
Q Consensus 276 ~~~~~~~a~~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y 328 (346)
+.+.+++|-+++..|++++|+..+..+|...--+.........++++.|.-|.
T Consensus 114 L~~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icr 166 (325)
T 3mv2_A 114 VNEKMNEGYKNFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKILETAR 166 (325)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeeccHHHHHHHHHHHHHHH
Confidence 33455677888899999999999999988876666677677777776666543
No 223
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=47.82 E-value=34 Score=26.80 Aligned_cols=37 Identities=14% Similarity=-0.003 Sum_probs=16.3
Q ss_pred cccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCC
Q psy5736 289 TSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGN 333 (346)
Q Consensus 289 ~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~ 333 (346)
.|++++|+..+++.++. .|.++ .+...|+.+|...|+
T Consensus 78 ~~~~~~A~~~~~~al~~-----~p~~~---~~~~~la~~~~~~~~ 114 (150)
T 4ga2_A 78 EENTDKAVECYRRSVEL-----NPTQK---DLVLKIAELLCKNDV 114 (150)
T ss_dssp TTCHHHHHHHHHHHHHH-----CTTCH---HHHHHHHHHHHHHCS
T ss_pred cCchHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHcCC
Confidence 34444444444444443 23332 234445555555544
No 224
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=47.78 E-value=58 Score=29.46 Aligned_cols=51 Identities=8% Similarity=0.089 Sum_probs=43.0
Q ss_pred HHHHHhccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCCc
Q psy5736 282 RGIEQMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGNK 334 (346)
Q Consensus 282 ~a~~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~~ 334 (346)
.|.-.+..|++++|+..+.+.++..... +..+....+...|+.+|..+|+.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~~~~~~~~ 159 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFV--KDRIEKAEFFFKMSESYYYMKQT 159 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGC--CCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhC--CCHHHHHHHHHHHHHHHHHcCCH
Confidence 6666788899999999999999988775 56667888889999999998875
No 225
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=47.58 E-value=55 Score=30.48 Aligned_cols=50 Identities=20% Similarity=0.191 Sum_probs=37.8
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHH
Q psy5736 278 EMFYRGIEQMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNC 327 (346)
Q Consensus 278 ~~~~~a~~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~ 327 (346)
+.+++|-+++..|++++|+..+..+|...--+.........++++.|.-|
T Consensus 104 ~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~ic 153 (320)
T 3mkr_B 104 QRLQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQLITIC 153 (320)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhhheeeccHHHHHHHHHHHHHH
Confidence 45567788889999999999999988887666666766666666665544
No 226
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=47.51 E-value=16 Score=26.44 Aligned_cols=29 Identities=14% Similarity=0.155 Sum_probs=19.3
Q ss_pred cccccccCCcCChHHHHHHHHHHHHHHHH
Q psy5736 254 EKKCESCNSTSDLTEIKTKLSELNEMFYR 282 (346)
Q Consensus 254 ~~~C~~C~~~~~~~~~~~~l~~~~~~~~~ 282 (346)
-|.|+.||..+-..+..+.+.++-..|++
T Consensus 36 ~~~C~~CGE~~~~~e~~~~~~~~~~~f~~ 64 (78)
T 3ga8_A 36 GLYCVHCEESIMNKEESDAFMAQVKAFRA 64 (78)
T ss_dssp EEEETTTCCEECCHHHHHHHHHHHHHHHH
T ss_pred eEECCCCCCEEECHHHHHHHHHHHHHHHH
Confidence 49999999987655555555555444444
No 227
>2rkl_A Vacuolar protein sorting-associated protein VTA1; dimerization motif, cytoplasm, endosome, lipid transport, membrane, protein transport; 1.50A {Saccharomyces cerevisiae} PDB: 3mhv_A
Probab=46.85 E-value=62 Score=21.89 Aligned_cols=38 Identities=21% Similarity=0.301 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhc
Q psy5736 271 TKLSELNEMFYRGIEQMNTSCFREAVESLTKFSDQIHE 308 (346)
Q Consensus 271 ~~l~~~~~~~~~a~~~~~~~~~~~ai~~l~~~l~~~~~ 308 (346)
..+.+++...+=|+.+++-.+...|++.|.+.|+.+..
T Consensus 15 ~~i~~AqK~aK~AiSAL~feDv~tA~~~L~~AL~lL~~ 52 (53)
T 2rkl_A 15 SKIEQIQKLAKYAISALNYEDLPTAKDELTKALDLLNS 52 (53)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHhc
Confidence 34556777777788889989999999999999987753
No 228
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=46.59 E-value=32 Score=30.26 Aligned_cols=14 Identities=29% Similarity=0.221 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHhCC
Q psy5736 320 AHEALRNCWSLAGN 333 (346)
Q Consensus 320 ~~~~L~~~y~~~G~ 333 (346)
+...++.+|..+|+
T Consensus 74 ~~~~lg~~~~~~g~ 87 (281)
T 2c2l_A 74 AHFFLGQCQLEMES 87 (281)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCC
Confidence 44455555555554
No 229
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=46.35 E-value=51 Score=28.96 Aligned_cols=49 Identities=10% Similarity=-0.066 Sum_probs=35.9
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCCc
Q psy5736 278 EMFYRGIEQMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGNK 334 (346)
Q Consensus 278 ~~~~~a~~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~~ 334 (346)
..+..|...+..|++++|+..|++.++.. |.+. .+...|+.+|...|+.
T Consensus 119 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-----P~~~---~a~~~la~~~~~~g~~ 167 (287)
T 3qou_A 119 LXAQQAMQLMQESNYTDALPLLXDAWQLS-----NQNG---EIGLLLAETLIALNRS 167 (287)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHT-----TSCH---HHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHhC-----Ccch---hHHHHHHHHHHHCCCH
Confidence 34555666778899999999888888765 5554 5677778888877763
No 230
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=45.83 E-value=58 Score=23.00 Aligned_cols=42 Identities=21% Similarity=0.180 Sum_probs=26.8
Q ss_pred HHhccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCCc
Q psy5736 285 EQMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGNK 334 (346)
Q Consensus 285 ~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~~ 334 (346)
-.+..+++++|+..+.+.++.. |.+. .+...++.+|...|+.
T Consensus 52 ~~~~~~~~~~A~~~~~~~~~~~-----~~~~---~~~~~la~~~~~~~~~ 93 (125)
T 1na0_A 52 AYYKQGDYDEAIEYYQKALELD-----PNNA---EAWYNLGNAYYKQGDY 93 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-----TTCH---HHHHHHHHHHHHTTCH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-----CccH---HHHHHHHHHHHHhcCH
Confidence 3455677777777777777652 3332 3456677777777764
No 231
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=45.31 E-value=63 Score=28.89 Aligned_cols=52 Identities=10% Similarity=-0.056 Sum_probs=40.6
Q ss_pred HHHHhccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCCc
Q psy5736 283 GIEQMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGNK 334 (346)
Q Consensus 283 a~~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~~ 334 (346)
+.-.+..|++++|+..+++.++...+.-.+.++....+...|..+|...|+.
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 151 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARL 151 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCH
Confidence 4445678999999999999999988776665666667777788888887764
No 232
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=45.29 E-value=81 Score=24.90 Aligned_cols=52 Identities=19% Similarity=0.082 Sum_probs=40.4
Q ss_pred HHHHHHhccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCCc
Q psy5736 281 YRGIEQMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGNK 334 (346)
Q Consensus 281 ~~a~~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~~ 334 (346)
..+.-.+..|++++|+..+.+.++.+... ...+....+...|..+|...|+.
T Consensus 31 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 31 MLGYVYAFMDRFDEARASFQALQQQAQKS--GDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTT--CCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHHHHHc--CCcHHHHHHHHHHHHHHHHcCCH
Confidence 34455567899999999999999988765 34556677888888888888874
No 233
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=45.28 E-value=68 Score=26.52 Aligned_cols=57 Identities=12% Similarity=-0.177 Sum_probs=39.9
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHhhccc--CCCcHh-HHHHHHHHHHHHHHhCCc
Q psy5736 278 EMFYRGIEQMNTSCFREAVESLTKFSDQIHELV--VPPYKL-ASLAHEALRNCWSLAGNK 334 (346)
Q Consensus 278 ~~~~~a~~~~~~~~~~~ai~~l~~~l~~~~~~l--~p~h~~-~~~~~~~L~~~y~~~G~~ 334 (346)
.....+......|++++|+..+.+.|+.|.+.+ .|.+.. +..+...+..++..+|+.
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~ 118 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRG 118 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCH
Confidence 455667777888999999999999999755532 343332 223337888888888764
No 234
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=44.73 E-value=67 Score=27.94 Aligned_cols=51 Identities=6% Similarity=0.044 Sum_probs=40.3
Q ss_pred HHHHhccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCCc
Q psy5736 283 GIEQMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGNK 334 (346)
Q Consensus 283 a~~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~~ 334 (346)
|.-....|++++|+.++++.++.+.+. +..++....+...|+.+|..+|+.
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~nlg~~y~~~~~y 212 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEAL-HDNEEFDVKVRYNHAKALYLDSRY 212 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhc-ccchhHHHHHHHHHHHHHHHHhHH
Confidence 444456789999999999999988664 346677778888999999988875
No 235
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=44.73 E-value=60 Score=28.88 Aligned_cols=50 Identities=12% Similarity=-0.029 Sum_probs=30.2
Q ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhhcccCCCcH-hHHHHHHHHHHHHHHhCCc
Q psy5736 280 FYRGIEQMNTSCFREAVESLTKFSDQIHELVVPPYK-LASLAHEALRNCWSLAGNK 334 (346)
Q Consensus 280 ~~~a~~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~-~~~~~~~~L~~~y~~~G~~ 334 (346)
+..|...+..|++++|+..+++.++. .|.++ ....+...|+.+|...|+.
T Consensus 13 ~~~g~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~~~~~l~~~~~~~g~~ 63 (406)
T 3sf4_A 13 ALEGERLCKSGDCRAGVSFFEAAVQV-----GTEDLKTLSAIYSQLGNAYFYLHDY 63 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-----CCSCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhc-----CcccHHHHHHHHHHHHHHHHHhcCH
Confidence 34455556667777777777777765 23333 3445666666666666653
No 236
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=44.69 E-value=49 Score=25.84 Aligned_cols=46 Identities=11% Similarity=0.062 Sum_probs=27.2
Q ss_pred HHHHhccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCCc
Q psy5736 283 GIEQMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGNK 334 (346)
Q Consensus 283 a~~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~~ 334 (346)
+.-.+..|++++|+..+.+.++.. |.+.. ......|..+...++..
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~~~-----p~~~~-~~~~~~l~~~~~~~~~~ 131 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIEAE-----GNGGS-DAMKRGLETTKRKIEEA 131 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH-----SSSCC-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhC-----CCchH-HHHHHHHHHHHHHHHHH
Confidence 344456677888888888888765 44443 22444555555555433
No 237
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=44.63 E-value=52 Score=26.26 Aligned_cols=45 Identities=7% Similarity=-0.193 Sum_probs=32.2
Q ss_pred HHHHHhccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCCc
Q psy5736 282 RGIEQMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGNK 334 (346)
Q Consensus 282 ~a~~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~~ 334 (346)
.+.-....|++++|+..|.+.++.- |.++ .+...|..+|..+|+.
T Consensus 76 lg~~~~~~g~~~~Ai~~~~~al~l~-----P~~~---~~~~~lg~~~~~lg~~ 120 (151)
T 3gyz_A 76 LAAIYQIKEQFQQAADLYAVAFALG-----KNDY---TPVFHTGQCQLRLKAP 120 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-----SSCC---HHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHccHHHHHHHHHHHHhhC-----CCCc---HHHHHHHHHHHHcCCH
Confidence 3444566788999999999888765 4444 3566778888888764
No 238
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.16 E-value=85 Score=23.15 Aligned_cols=46 Identities=11% Similarity=-0.035 Sum_probs=31.8
Q ss_pred HHHHHHhccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCCc
Q psy5736 281 YRGIEQMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGNK 334 (346)
Q Consensus 281 ~~a~~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~~ 334 (346)
..+.-.+..+++++|+..+.+.++.. |.+ ..+...++.+|..+|+.
T Consensus 70 ~~a~~~~~~~~~~~A~~~~~~~~~~~-----~~~---~~~~~~~a~~~~~~~~~ 115 (148)
T 2dba_A 70 NRAACHLKLEDYDKAETEASKAIEKD-----GGD---VKALYRRSQALEKLGRL 115 (148)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHT-----SCC---HHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHccHHHHHHHHHHHHhhC-----ccC---HHHHHHHHHHHHHcCCH
Confidence 34445567788999999998888763 444 34556677777777764
No 239
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=42.24 E-value=64 Score=22.97 Aligned_cols=45 Identities=16% Similarity=0.017 Sum_probs=33.1
Q ss_pred HHHHHhccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCCc
Q psy5736 282 RGIEQMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGNK 334 (346)
Q Consensus 282 ~a~~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~~ 334 (346)
.+.-.+..+++++|+..+++.++.. |.++ .+...++.++..+|+.
T Consensus 86 ~~~~~~~~~~~~~A~~~~~~~~~~~-----p~~~---~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 86 MGLALSSLNKHVEAVAYYKKALELD-----PDNE---TYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-----TTCH---HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcC-----ccch---HHHHHHHHHHHHHhcC
Confidence 3444567789999999999998763 4443 4677888888888764
No 240
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=42.11 E-value=84 Score=29.87 Aligned_cols=62 Identities=13% Similarity=0.043 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhcccC-------CCcHhHHHHHHHHHHHHHHhCCc
Q psy5736 273 LSELNEMFYRGIEQMNTSCFREAVESLTKFSDQIHELVV-------PPYKLASLAHEALRNCWSLAGNK 334 (346)
Q Consensus 273 l~~~~~~~~~a~~~~~~~~~~~ai~~l~~~l~~~~~~l~-------p~h~~~~~~~~~L~~~y~~~G~~ 334 (346)
...+..++..+...+..+++++|+..|.+.++.....-. ...+....+...++.||..+|+.
T Consensus 265 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~ 333 (457)
T 1kt0_A 265 LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREY 333 (457)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 344556667788888999999999999999987643210 01223456777888888888765
No 241
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=41.71 E-value=74 Score=28.75 Aligned_cols=45 Identities=9% Similarity=0.204 Sum_probs=20.2
Q ss_pred hccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCC
Q psy5736 287 MNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGN 333 (346)
Q Consensus 287 ~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~ 333 (346)
...|++++|++.+.+.++...+. +.......+...|+.+|...|+
T Consensus 193 ~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~lg~~y~~~~~ 237 (378)
T 3q15_A 193 DDFKHYDKALPHLEAALELAMDI--QNDRFIAISLLNIANSYDRSGD 237 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHhCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHCCC
Confidence 33445555555555555444332 2222334444444444444443
No 242
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=41.59 E-value=85 Score=27.38 Aligned_cols=58 Identities=16% Similarity=0.092 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHH-hccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCCc
Q psy5736 275 ELNEMFYRGIEQ-MNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGNK 334 (346)
Q Consensus 275 ~~~~~~~~a~~~-~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~~ 334 (346)
++.+.|.++... ...|++++|++.+.+.++.+.+. ........+...+..+|..+|+.
T Consensus 35 ~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~~~~~g~~ 93 (292)
T 1qqe_A 35 EAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKA--GNEDEAGNTYVEAYKCFKSGGNS 93 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHCCCH
Confidence 344444444333 45788999999999999988764 23344566777788888877764
No 243
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=41.24 E-value=43 Score=23.29 Aligned_cols=48 Identities=17% Similarity=0.205 Sum_probs=34.0
Q ss_pred HHHHHHhccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHh-CCc
Q psy5736 281 YRGIEQMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLA-GNK 334 (346)
Q Consensus 281 ~~a~~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~-G~~ 334 (346)
..|.-.+..+++++|++.+++.++.. |. .....+...++.+|..+ |+.
T Consensus 45 ~~a~~~~~~~~~~~A~~~~~~a~~~~-----~~-~~~~~~~~~l~~~~~~~~~~~ 93 (112)
T 2kck_A 45 MKGKALYNLERYEEAVDCYNYVINVI-----ED-EYNKDVWAAKADALRYIEGKE 93 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTS-----CC-TTCHHHHHHHHHHHTTCSSCS
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhC-----cc-cchHHHHHHHHHHHHHHhCCH
Confidence 34455567789999999999998763 33 11235677888888888 775
No 244
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=41.03 E-value=66 Score=23.68 Aligned_cols=22 Identities=9% Similarity=0.013 Sum_probs=10.3
Q ss_pred HHHhccccHHHHHHHHHHHHHH
Q psy5736 284 IEQMNTSCFREAVESLTKFSDQ 305 (346)
Q Consensus 284 ~~~~~~~~~~~ai~~l~~~l~~ 305 (346)
...+..|++++|+..+.+.++.
T Consensus 17 ~~~~~~~~~~~A~~~~~~al~~ 38 (137)
T 3q49_B 17 NRLFVGRKYPEAAACYGRAITR 38 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHhh
Confidence 3334444555555555544443
No 245
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=41.02 E-value=66 Score=22.44 Aligned_cols=16 Identities=19% Similarity=0.038 Sum_probs=7.6
Q ss_pred ccccHHHHHHHHHHHH
Q psy5736 288 NTSCFREAVESLTKFS 303 (346)
Q Consensus 288 ~~~~~~~ai~~l~~~l 303 (346)
..|++++|++.+++.+
T Consensus 84 ~~~~~~~A~~~~~~~~ 99 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGL 99 (118)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHH
Confidence 3444555555444444
No 246
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=41.00 E-value=62 Score=26.55 Aligned_cols=50 Identities=14% Similarity=-0.014 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCCc
Q psy5736 276 LNEMFYRGIEQMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGNK 334 (346)
Q Consensus 276 ~~~~~~~a~~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~~ 334 (346)
++.++..|...+..|++++|++.+.+.++.. . + ..+...++.+|...|+.
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~-----~---~~~~~~~~~~~~~~~~~ 54 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH-K-----D---ITYLNNRAAAEYEKGEY 54 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-C-----C---THHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-c-----c---HHHHHHHHHHHHHcccH
Confidence 3445556666777888888888888888765 1 1 23555666677766654
No 247
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=40.85 E-value=61 Score=24.70 Aligned_cols=20 Identities=25% Similarity=0.346 Sum_probs=12.5
Q ss_pred ccccccCCcCChHHHHHHHH
Q psy5736 255 KKCESCNSTSDLTEIKTKLS 274 (346)
Q Consensus 255 ~~C~~C~~~~~~~~~~~~l~ 274 (346)
..||.||..++.+.....+.
T Consensus 48 ~~CPvCgs~l~~~~~~~~i~ 67 (112)
T 1l8d_A 48 GKCPVCGRELTDEHREELLS 67 (112)
T ss_dssp EECTTTCCEECHHHHHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHH
Confidence 56888888877654333333
No 248
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=40.74 E-value=46 Score=27.91 Aligned_cols=52 Identities=17% Similarity=0.160 Sum_probs=35.0
Q ss_pred cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeCC
Q psy5736 3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNY 65 (346)
Q Consensus 3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~~ 65 (346)
+.+++|.+||.++++....+. |...++++.+ . ++..++++++ +|.|.+|..-
T Consensus 19 ~~~~~i~~~d~~~~~~~~~~~--------~~~~v~~~~~-s-pdg~~l~~~~-~~~i~~~d~~ 70 (297)
T 2ojh_A 19 SMRSSIEIFNIRTRKMRVVWQ--------TPELFEAPNW-S-PDGKYLLLNS-EGLLYRLSLA 70 (297)
T ss_dssp CCCEEEEEEETTTTEEEEEEE--------ESSCCEEEEE-C-TTSSEEEEEE-TTEEEEEESS
T ss_pred CcceeEEEEeCCCCceeeecc--------CCcceEeeEE-C-CCCCEEEEEc-CCeEEEEeCC
Confidence 578999999999886554332 3456777775 2 3455555554 8889888543
No 249
>1wvo_A Sialic acid synthase; antifreeze protein like domain, N-acetylneuraminic acid phosphate synthase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.65 E-value=12 Score=27.49 Aligned_cols=19 Identities=11% Similarity=-0.011 Sum_probs=15.8
Q ss_pred EEEEeeccCCCCceeeccc
Q psy5736 166 IVKALRPLKPKEVVAENYG 184 (346)
Q Consensus 166 ~v~a~r~I~~Geel~~~Y~ 184 (346)
.|+|.++|++||.|+..=.
T Consensus 8 slvA~rdI~~Gevit~~dl 26 (79)
T 1wvo_A 8 SVVAKVKIPEGTILTMDML 26 (79)
T ss_dssp EEEESSCBCTTCBCCGGGE
T ss_pred EEEEeCccCCCCCcCHHHe
Confidence 5789999999999986543
No 250
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=40.56 E-value=80 Score=28.39 Aligned_cols=48 Identities=17% Similarity=0.159 Sum_probs=28.0
Q ss_pred HHhccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCCc
Q psy5736 285 EQMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGNK 334 (346)
Q Consensus 285 ~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~~ 334 (346)
-.+..|++++|++.+++.++...+. ..+.....+...|+.+|...|+.
T Consensus 272 ~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~ 319 (411)
T 4a1s_A 272 SHIFLGQFEDAAEHYKRTLALAVEL--GEREVEAQSCYSLGNTYTLLHEF 319 (411)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHCcCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHcCCH
Confidence 3445566666666666666666543 34444555566666666666553
No 251
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=40.53 E-value=49 Score=24.85 Aligned_cols=46 Identities=13% Similarity=0.135 Sum_probs=29.4
Q ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCC
Q psy5736 280 FYRGIEQMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGN 333 (346)
Q Consensus 280 ~~~a~~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~ 333 (346)
+..+...+..|++++|+..+++.++.. |.++ .+...|..+|...|+
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~-----P~~~---~a~~~lg~~~~~~g~ 66 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKE-----PERE---EAWRSLGLTQAENEK 66 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTCH---HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCCH---HHHHHHHHHHHHcCC
Confidence 344556677788888888888888753 4443 344555556655553
No 252
>2a9u_A Ubiquitin carboxyl-terminal hydrolase 8; coil-COIL, protease, SH3-binding, thiol protease, UBL conjugation pathway, structural genomics; 2.10A {Homo sapiens} SCOP: a.118.23.1
Probab=40.20 E-value=62 Score=26.43 Aligned_cols=51 Identities=8% Similarity=-0.055 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHH
Q psy5736 271 TKLSELNEMFYRGIEQMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEA 323 (346)
Q Consensus 271 ~~l~~~~~~~~~a~~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~ 323 (346)
.-++.+..+++.|......|+.+.|--.|.+++..+. ..|.|+.+......
T Consensus 37 ~y~rsa~~L~r~A~~y~~EGd~E~AYilymRy~~L~~--kIpkHpdyk~~~~~ 87 (144)
T 2a9u_A 37 SYVHSALKIFKTAEECRLDRDEERAYVLYMKYVTVYN--LIKKRPDFKQQQDY 87 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--HHTTSHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--HHhcCcchhhhhHH
Confidence 4566778888888888999999999999999999984 66999988766543
No 253
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=40.14 E-value=62 Score=26.13 Aligned_cols=23 Identities=9% Similarity=0.070 Sum_probs=11.7
Q ss_pred HHHHhccccHHHHHHHHHHHHHH
Q psy5736 283 GIEQMNTSCFREAVESLTKFSDQ 305 (346)
Q Consensus 283 a~~~~~~~~~~~ai~~l~~~l~~ 305 (346)
|.-.+..+++++|+..+.+.++.
T Consensus 95 a~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 95 ATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHh
Confidence 33334455555555555555543
No 254
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=39.80 E-value=66 Score=28.58 Aligned_cols=51 Identities=12% Similarity=-0.029 Sum_probs=41.3
Q ss_pred HHHhccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCCccc
Q psy5736 284 IEQMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGNKWV 336 (346)
Q Consensus 284 ~~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~~~~ 336 (346)
.-....|++++|++.+++.++...+. ...+....+...|+.+|..+|+.+.
T Consensus 315 ~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 315 NAYTALGNHDQAMHFAEKHLEISREV--GDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHh--cCCcchhHHHHHHHHHHHHhhHhHH
Confidence 33456789999999999999988776 4456778889999999999998754
No 255
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=39.13 E-value=58 Score=28.25 Aligned_cols=41 Identities=15% Similarity=0.027 Sum_probs=22.4
Q ss_pred HhccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCCc
Q psy5736 286 QMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGNK 334 (346)
Q Consensus 286 ~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~~ 334 (346)
.+..|++++|+..+.+.++. .|.+. .+...++.+|...|+.
T Consensus 47 ~~~~~~~~~A~~~~~~~~~~-----~~~~~---~~~~~l~~~~~~~~~~ 87 (359)
T 3ieg_A 47 FLAMGKSKAALPDLTKVIAL-----KMDFT---AARLQRGHLLLKQGKL 87 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHHH-----CTTCH---HHHHHHHHHHHHHTCH
T ss_pred HHHccCHHHHHHHHHHHHHh-----CCCcc---hHHHHHHHHHHHcCCh
Confidence 34455566666666666554 23332 4556666666666654
No 256
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=39.02 E-value=18 Score=24.79 Aligned_cols=34 Identities=18% Similarity=0.343 Sum_probs=21.0
Q ss_pred cCccccccCCcCcCC-cccccccCCcccccCcccccccCCcCC
Q psy5736 224 KYPIRIRCSNDNCGQ-IIATVKKLEPSAKKVEKKCESCNSTSD 265 (346)
Q Consensus 224 ~~~~~~~C~~~~C~g-~~~~~~~~~~~~~~~~~~C~~C~~~~~ 265 (346)
.++..+.|| .|++ .+..... ...+.|..||..+.
T Consensus 7 ~ll~~~~Cp--~C~~~~lv~D~~------~ge~vC~~CGlVl~ 41 (58)
T 1dl6_A 7 DALPRVTCP--NHPDAILVEDYR------AGDMICPECGLVVG 41 (58)
T ss_dssp CCCSCCSBT--TBSSSCCEECSS------SCCEECTTTCCEEC
T ss_pred hccccccCc--CCCCCceeEeCC------CCeEEeCCCCCEEe
Confidence 344566899 8976 3322211 22499999998754
No 257
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=38.93 E-value=87 Score=26.54 Aligned_cols=43 Identities=23% Similarity=0.177 Sum_probs=19.5
Q ss_pred cccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCC
Q psy5736 289 TSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGN 333 (346)
Q Consensus 289 ~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~ 333 (346)
.|++++|+..+.+.++...+. +.......+...+..+|...|+
T Consensus 96 ~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l~~~~~~~~~ 138 (338)
T 3ro2_A 96 LGNFDEAIVCCQRHLDISREL--NDKVGEARALYNLGNVYHAKGK 138 (338)
T ss_dssp TTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHHh--cCchHHHHHHHHHHHHHHHcCc
Confidence 444444444444444444432 3333444444444444444433
No 258
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=38.82 E-value=1.1e+02 Score=25.02 Aligned_cols=51 Identities=10% Similarity=0.156 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHh
Q psy5736 276 LNEMFYRGIEQMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLA 331 (346)
Q Consensus 276 ~~~~~~~a~~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~ 331 (346)
.+.+|.-|+..+..+++++|++++..+|+.= |.|..-..++..+.....+-
T Consensus 71 rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ie-----P~n~QA~~Lk~~ie~~~~kd 121 (152)
T 1pc2_A 71 RDYVFYLAVGNYRLKEYEKALKYVRGLLQTE-----PQNNQAKELERLIDKAMKKD 121 (152)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHh
Confidence 4456777788899999999999999999865 88887777777776665543
No 259
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=38.39 E-value=98 Score=25.95 Aligned_cols=54 Identities=17% Similarity=0.188 Sum_probs=37.7
Q ss_pred HHHHHHhccccHHHHHHHHHHHHHHhhcccCCCcH-----------------hHHHHHHHHHHHHHHhCCc
Q psy5736 281 YRGIEQMNTSCFREAVESLTKFSDQIHELVVPPYK-----------------LASLAHEALRNCWSLAGNK 334 (346)
Q Consensus 281 ~~a~~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~-----------------~~~~~~~~L~~~y~~~G~~ 334 (346)
--|......++|..|...|.+.|+....+.-.+.. .=.+++..++.||..+|+.
T Consensus 68 ~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~ 138 (167)
T 3ffl_A 68 YHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQD 138 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCH
Confidence 33445577899999999999999888765433211 1137889999999999875
No 260
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=38.21 E-value=89 Score=27.13 Aligned_cols=53 Identities=9% Similarity=0.055 Sum_probs=41.3
Q ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCCc
Q psy5736 280 FYRGIEQMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGNK 334 (346)
Q Consensus 280 ~~~a~~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~~ 334 (346)
+.-+.-....|++++|++++.+.++...+. ..++.+..+...+..+|..+|+.
T Consensus 200 ~nlg~~y~~~~~y~~A~~~~~~al~~~~~~--~~~~~~~~~~~~lg~~~~~~g~~ 252 (293)
T 3u3w_A 200 YNHAKALYLDSRYEESLYQVNKAIEISCRI--NSMALIGQLYYQRGECLRKLEYE 252 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TBCTTHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHc--CcHHHHHHHHHHHHHHHHHhCCc
Confidence 344455577899999999999999887664 44556788889999999999853
No 261
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=37.99 E-value=1.2e+02 Score=27.31 Aligned_cols=61 Identities=13% Similarity=0.066 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhcccC-------CCcHhHHHHHHHHHHHHHHhCCc
Q psy5736 274 SELNEMFYRGIEQMNTSCFREAVESLTKFSDQIHELVV-------PPYKLASLAHEALRNCWSLAGNK 334 (346)
Q Consensus 274 ~~~~~~~~~a~~~~~~~~~~~ai~~l~~~l~~~~~~l~-------p~h~~~~~~~~~L~~~y~~~G~~ 334 (346)
..+..++..+...+..+++++|+..|.+.++....... ...+....+...|+.||..+|+.
T Consensus 145 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~ 212 (336)
T 1p5q_A 145 EQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAF 212 (336)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 34455566677778889999999999999987643210 01223456777888888888775
No 262
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=37.76 E-value=85 Score=25.72 Aligned_cols=40 Identities=13% Similarity=-0.008 Sum_probs=19.3
Q ss_pred hccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCCc
Q psy5736 287 MNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGNK 334 (346)
Q Consensus 287 ~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~~ 334 (346)
+..|++++|++.+++.++.. |. ...+...++.+|...|+.
T Consensus 53 ~~~~~~~~A~~~~~~al~~~-----p~---~~~~~~~l~~~~~~~~~~ 92 (228)
T 4i17_A 53 DNIKKYKEAADYFDIAIKKN-----YN---LANAYIGKSAAYRDMKNN 92 (228)
T ss_dssp HHTTCHHHHHHHHHHHHHTT-----CS---HHHHHHHHHHHHHHTTCH
T ss_pred HHhhcHHHHHHHHHHHHHhC-----cc---hHHHHHHHHHHHHHcccH
Confidence 33445555555555555321 22 233455566666665553
No 263
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=37.58 E-value=15 Score=25.51 Aligned_cols=35 Identities=14% Similarity=0.422 Sum_probs=22.8
Q ss_pred cccccCCcCcCCcccccccCCcccccCcccccccCCc
Q psy5736 227 IRIRCSNDNCGQIIATVKKLEPSAKKVEKKCESCNST 263 (346)
Q Consensus 227 ~~~~C~~~~C~g~~~~~~~~~~~~~~~~~~C~~C~~~ 263 (346)
.-++|.+..|++++.|--.-+ .....|+|.-|+..
T Consensus 8 ~pvRC~r~~CraylNP~~~~~--~~~~~W~C~~C~~~ 42 (59)
T 2yrc_A 8 EPVLCSRTTCRAVLNPLCQVD--YRAKLWACNFCYQR 42 (59)
T ss_dssp CCCBCSCTTTCCBCCTTSEEE--GGGTEEECSSSCCE
T ss_pred CCcccCCCCCCeEECCceEEE--CCCCEEEcccCCCc
Confidence 557898444998887653211 11235999999875
No 264
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=37.45 E-value=1e+02 Score=25.15 Aligned_cols=53 Identities=19% Similarity=0.307 Sum_probs=41.2
Q ss_pred HHHHHHhccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCCc
Q psy5736 281 YRGIEQMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGNK 334 (346)
Q Consensus 281 ~~a~~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~~ 334 (346)
..+.-.+..|++++|++.+.+.++..... .+.++....+...++.+|...|+.
T Consensus 43 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~ 95 (258)
T 3uq3_A 43 NRAAAEYEKGEYETAISTLNDAVEQGREM-RADYKVISKSFARIGNAYHKLGDL 95 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHhCccc-ccchHHHHHHHHHHHHHHHHcccH
Confidence 34455567899999999999999877553 345666678889999999998875
No 265
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=36.26 E-value=78 Score=24.57 Aligned_cols=16 Identities=6% Similarity=0.160 Sum_probs=6.4
Q ss_pred cccHHHHHHHHHHHHH
Q psy5736 289 TSCFREAVESLTKFSD 304 (346)
Q Consensus 289 ~~~~~~ai~~l~~~l~ 304 (346)
.|++++|++.+.+.++
T Consensus 44 ~~~~~~A~~~~~~al~ 59 (150)
T 4ga2_A 44 AKEYDLAKKYICTYIN 59 (150)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 3344444444444433
No 266
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=36.17 E-value=90 Score=28.84 Aligned_cols=54 Identities=17% Similarity=0.151 Sum_probs=41.3
Q ss_pred HHHHHHhc---cccHHHHHHHHHHHHHHhhccc--CCCc----HhHHHHHHHHHHHHHHhCCc
Q psy5736 281 YRGIEQMN---TSCFREAVESLTKFSDQIHELV--VPPY----KLASLAHEALRNCWSLAGNK 334 (346)
Q Consensus 281 ~~a~~~~~---~~~~~~ai~~l~~~l~~~~~~l--~p~h----~~~~~~~~~L~~~y~~~G~~ 334 (346)
..+...+. .|++++|+..+.+.++.+...+ .|.+ +....+...++.+|...|+.
T Consensus 191 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (514)
T 2gw1_A 191 MNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDP 253 (514)
T ss_dssp HHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCH
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCH
Confidence 33444444 7899999999999999887766 6665 66777888888888888774
No 267
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=36.10 E-value=64 Score=25.14 Aligned_cols=44 Identities=9% Similarity=-0.089 Sum_probs=25.5
Q ss_pred HHHHhccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHh
Q psy5736 283 GIEQMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLA 331 (346)
Q Consensus 283 a~~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~ 331 (346)
+.-.+..|++++|+..+++.++.. |.++.....+..+...+..+
T Consensus 96 g~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~~~~~~~~l~~l 139 (148)
T 2vgx_A 96 AECLLQXGELAEAESGLFLAQELI-----ANXPEFXELSTRVSSMLEAI 139 (148)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH-----TTCGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-----cCCCcchHHHHHHHHHHHHH
Confidence 334455677777777777777665 44555555555555554444
No 268
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=36.02 E-value=86 Score=27.22 Aligned_cols=52 Identities=6% Similarity=0.000 Sum_probs=37.9
Q ss_pred HHHHHHhccccHHHHHHHHHHHHHHhhcccCCCcHhHH-HHHHHHHHHHHHhCCc
Q psy5736 281 YRGIEQMNTSCFREAVESLTKFSDQIHELVVPPYKLAS-LAHEALRNCWSLAGNK 334 (346)
Q Consensus 281 ~~a~~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~-~~~~~L~~~y~~~G~~ 334 (346)
..|.-....|++++|+..+++.++.+... +...... .+...++.+|...|+.
T Consensus 160 ~lg~~y~~~~~~~~A~~~~~kal~~~~~~--~~~~~~~~~~~~nlg~~y~~~~~y 212 (293)
T 2qfc_A 160 AIANIYAENGYLKKGIDLFEQILKQLEAL--HDNEEFDVKVRYNHAKALYLDSRY 212 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhc--CccccchHHHHHhHHHHHHHHhhH
Confidence 34555567899999999999999887654 2333322 6778888888888764
No 269
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=35.62 E-value=97 Score=21.69 Aligned_cols=39 Identities=23% Similarity=0.195 Sum_probs=24.5
Q ss_pred HhccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhC
Q psy5736 286 QMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAG 332 (346)
Q Consensus 286 ~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G 332 (346)
....+++++|+..+.+.++.. |.++ .+...|..++...|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~-----~~~~---~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD-----PNNA---EAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-----TTCH---HHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhC-----CCcH---HHHHHHHHHHHhcc
Confidence 355677888888888777652 4443 35566666666544
No 270
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=35.49 E-value=64 Score=29.21 Aligned_cols=49 Identities=18% Similarity=-0.018 Sum_probs=37.5
Q ss_pred HHHHhccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCCc
Q psy5736 283 GIEQMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGNK 334 (346)
Q Consensus 283 a~~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~~ 334 (346)
|.-....|++++|++.+++.++.+...-.|. ...+...|+.+|...|+.
T Consensus 229 g~~y~~~~~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~la~~~~~~g~~ 277 (378)
T 3q15_A 229 ANSYDRSGDDQMAVEHFQKAAKVSREKVPDL---LPKVLFGLSWTLCKAGQT 277 (378)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG---HHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHhhCChh---HHHHHHHHHHHHHHCCCH
Confidence 3344567889999999999999887764443 367788889999888875
No 271
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=35.25 E-value=1.2e+02 Score=26.10 Aligned_cols=48 Identities=13% Similarity=0.225 Sum_probs=27.7
Q ss_pred HHHHHhccccHHHHHHHHHHHHHHhhcccCCCcH-hHHHHHHHHHHHHHHhCCc
Q psy5736 282 RGIEQMNTSCFREAVESLTKFSDQIHELVVPPYK-LASLAHEALRNCWSLAGNK 334 (346)
Q Consensus 282 ~a~~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~-~~~~~~~~L~~~y~~~G~~ 334 (346)
.+...+..|++++|+..+.+.++.. |.++ ....+...++.+|...|+.
T Consensus 240 ~a~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~~la~~~~~~~~~ 288 (359)
T 3ieg_A 240 SAEELIRDGRYTDATSKYESVMKTE-----PSVAEYTVRSKERICHCFSKDEKP 288 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-----CSSHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC-----CCchHHHHHHHHHHHHHHHHccCH
Confidence 3444556677777777777776654 3333 2334455566666666653
No 272
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=35.23 E-value=87 Score=23.63 Aligned_cols=40 Identities=15% Similarity=0.106 Sum_probs=21.0
Q ss_pred HhccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCC
Q psy5736 286 QMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGN 333 (346)
Q Consensus 286 ~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~ 333 (346)
.+..+++++|++.+.+.++.. |.++ .+...++.+|...|+
T Consensus 57 ~~~~~~~~~A~~~~~~a~~~~-----~~~~---~~~~~~a~~~~~~~~ 96 (166)
T 1a17_A 57 YLRTECYGYALGDATRAIELD-----KKYI---KGYYRRAASNMALGK 96 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-----TTCH---HHHHHHHHHHHHTTC
T ss_pred HHHcCCHHHHHHHHHHHHHhC-----cccH---HHHHHHHHHHHHhcc
Confidence 344566666666666666542 2222 234455555555554
No 273
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=34.94 E-value=66 Score=28.30 Aligned_cols=53 Identities=23% Similarity=0.179 Sum_probs=39.0
Q ss_pred HHHHhccccHHHHHHHHHHHHHHhhcccC---CCcHhHHHHHHHHHHHHHHhCCcc
Q psy5736 283 GIEQMNTSCFREAVESLTKFSDQIHELVV---PPYKLASLAHEALRNCWSLAGNKW 335 (346)
Q Consensus 283 a~~~~~~~~~~~ai~~l~~~l~~~~~~l~---p~h~~~~~~~~~L~~~y~~~G~~~ 335 (346)
+.-.+..|++++|+..+++.++....... ..++....+...|+.+|..+|+.-
T Consensus 292 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 347 (368)
T 1fch_A 292 GISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSD 347 (368)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGG
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChH
Confidence 44446678999999999999988765522 234455678889999999999863
No 274
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=34.72 E-value=1e+02 Score=23.35 Aligned_cols=16 Identities=6% Similarity=-0.095 Sum_probs=6.8
Q ss_pred cccHHHHHHHHHHHHH
Q psy5736 289 TSCFREAVESLTKFSD 304 (346)
Q Consensus 289 ~~~~~~ai~~l~~~l~ 304 (346)
.|++++|++.+++.++
T Consensus 99 ~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 99 LGDLDGAESGFYSARA 114 (142)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 3444444444444443
No 275
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=34.20 E-value=35 Score=26.37 Aligned_cols=11 Identities=27% Similarity=0.610 Sum_probs=8.3
Q ss_pred cccccccCCcC
Q psy5736 254 EKKCESCNSTS 264 (346)
Q Consensus 254 ~~~C~~C~~~~ 264 (346)
.|.|.+|++.+
T Consensus 54 IW~C~kCg~~~ 64 (103)
T 4a17_Y 54 IWKCKPCKKII 64 (103)
T ss_dssp EEEETTTTEEE
T ss_pred eEEcCCCCCEE
Confidence 48888887753
No 276
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=33.82 E-value=1.2e+02 Score=26.69 Aligned_cols=49 Identities=18% Similarity=0.017 Sum_probs=32.3
Q ss_pred HHHHhccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCC
Q psy5736 283 GIEQMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGN 333 (346)
Q Consensus 283 a~~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~ 333 (346)
+.-.+..|++++|+..+++.++...+.-. ++....+...+..+|..+|+
T Consensus 162 g~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~~g~~~~~~g~ 210 (307)
T 2ifu_A 162 SRLLVRQQKFDEAAASLQKEKSMYKEMEN--YPTCYKKCIAQVLVQLHRAD 210 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCC--hhHHHHHHHHHHHHHHHcCC
Confidence 33445678899999999998888766422 33444455666666666665
No 277
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=33.51 E-value=35 Score=25.01 Aligned_cols=33 Identities=12% Similarity=0.052 Sum_probs=24.2
Q ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhhcccCC
Q psy5736 280 FYRGIEQMNTSCFREAVESLTKFSDQIHELVVP 312 (346)
Q Consensus 280 ~~~a~~~~~~~~~~~ai~~l~~~l~~~~~~l~p 312 (346)
.+.|-+..-.|+|+.|+.+|+..++...+.+..
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~g~~~qI~k~l~~ 48 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQGVLDQMNKYLYS 48 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHh
Confidence 344444555689999999999999877776543
No 278
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=33.45 E-value=26 Score=32.10 Aligned_cols=57 Identities=12% Similarity=0.012 Sum_probs=39.1
Q ss_pred HHHHHHhccccHHHHHHHHHHHHHHhhccc---------CCCcHhHHHHHHHHHHHHHHhCCcccc
Q psy5736 281 YRGIEQMNTSCFREAVESLTKFSDQIHELV---------VPPYKLASLAHEALRNCWSLAGNKWVI 337 (346)
Q Consensus 281 ~~a~~~~~~~~~~~ai~~l~~~l~~~~~~l---------~p~h~~~~~~~~~L~~~y~~~G~~~~~ 337 (346)
++|.++++.|++++|++.+.++++.....- .........+...|...|...|+.-..
T Consensus 9 ~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a 74 (434)
T 4b4t_Q 9 EEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKL 74 (434)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHH
Confidence 445556778999999999999998765421 112334555667788888888876443
No 279
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=33.36 E-value=81 Score=21.75 Aligned_cols=44 Identities=11% Similarity=0.043 Sum_probs=30.6
Q ss_pred HHHHhccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCCc
Q psy5736 283 GIEQMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGNK 334 (346)
Q Consensus 283 a~~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~~ 334 (346)
+...+..+++++|+..+.+.++.. |.+. .+...++.+|...|+.
T Consensus 13 ~~~~~~~~~~~~A~~~~~~a~~~~-----~~~~---~~~~~~a~~~~~~~~~ 56 (112)
T 2kck_A 13 GVLQYDAGNYTESIDLFEKAIQLD-----PEES---KYWLMKGKALYNLERY 56 (112)
T ss_dssp HHHHHSSCCHHHHHHHHHHHHHHC-----CCCH---HHHHHHHHHHHHTTCH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhC-----cCCH---HHHHHHHHHHHHccCH
Confidence 444567889999999999988764 3332 3456677777777664
No 280
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=33.34 E-value=1.1e+02 Score=27.66 Aligned_cols=47 Identities=13% Similarity=0.214 Sum_probs=30.8
Q ss_pred HHHHhccccHHHHHHHHHHHHHHhhcccCCCcHh-HHHHHHHHHHHHHHhCCc
Q psy5736 283 GIEQMNTSCFREAVESLTKFSDQIHELVVPPYKL-ASLAHEALRNCWSLAGNK 334 (346)
Q Consensus 283 a~~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~-~~~~~~~L~~~y~~~G~~ 334 (346)
+...+..|++++|+..+.+.++.. |.++. ...+...++.+|...|+.
T Consensus 264 ~~~~~~~g~~~~A~~~~~~~l~~~-----p~~~~~~~~~~~~l~~~~~~~g~~ 311 (450)
T 2y4t_A 264 AEELIRDGRYTDATSKYESVMKTE-----PSIAEYTVRSKERICHCFSKDEKP 311 (450)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-----CSSHHHHHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-----CcchHHHHHHHHHHHHHHHHCCCH
Confidence 445566788888888888887643 44443 345666777777777664
No 281
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=32.87 E-value=1e+02 Score=24.46 Aligned_cols=18 Identities=17% Similarity=0.030 Sum_probs=8.7
Q ss_pred hccccHHHHHHHHHHHHH
Q psy5736 287 MNTSCFREAVESLTKFSD 304 (346)
Q Consensus 287 ~~~~~~~~ai~~l~~~l~ 304 (346)
+..|++++|+..+.+.++
T Consensus 124 ~~~~~~~~A~~~~~~~~~ 141 (225)
T 2vq2_A 124 AKQGQFGLAEAYLKRSLA 141 (225)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 334445555555555444
No 282
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=32.74 E-value=96 Score=22.56 Aligned_cols=44 Identities=14% Similarity=0.095 Sum_probs=30.9
Q ss_pred HHHHHHhccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHH
Q psy5736 281 YRGIEQMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWS 329 (346)
Q Consensus 281 ~~a~~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~ 329 (346)
..+.-.+..|++++|+..+++.++.. |.++.+.....++...-.
T Consensus 66 ~l~~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~~~ai~~~~~ 109 (117)
T 3k9i_A 66 FYAMVLYNLGRYEQGVELLLKIIAET-----SDDETIQSYKQAILFYAD 109 (117)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHH-----CCCHHHHHTHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-----CCcHHHHHHHHHHHHHHH
Confidence 34555577899999999999999865 667766665555544333
No 283
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=32.49 E-value=77 Score=22.50 Aligned_cols=41 Identities=22% Similarity=0.180 Sum_probs=27.2
Q ss_pred HhccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCCc
Q psy5736 286 QMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGNK 334 (346)
Q Consensus 286 ~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~~ 334 (346)
....+++++|+..+++.++.. |.+. .+...++.+|...|+.
T Consensus 45 ~~~~~~~~~A~~~~~~~~~~~-----~~~~---~~~~~l~~~~~~~~~~ 85 (136)
T 2fo7_A 45 YYKQGDYDEAIEYYQKALELD-----PRSA---EAWYNLGNAYYKQGDY 85 (136)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-----TTCH---HHHHHHHHHHHTTTCH
T ss_pred HHHhcCHHHHHHHHHHHHHHC-----CCch---HHHHHHHHHHHHhcCH
Confidence 345677888888888877653 3332 3456677888887764
No 284
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=32.31 E-value=78 Score=28.66 Aligned_cols=65 Identities=9% Similarity=0.124 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhcccC-CCc--------HhHHHHHHHHHHHHHHhCCc
Q psy5736 270 KTKLSELNEMFYRGIEQMNTSCFREAVESLTKFSDQIHELVV-PPY--------KLASLAHEALRNCWSLAGNK 334 (346)
Q Consensus 270 ~~~l~~~~~~~~~a~~~~~~~~~~~ai~~l~~~l~~~~~~l~-p~h--------~~~~~~~~~L~~~y~~~G~~ 334 (346)
...+..+..++..+...+..+++++|+..|.+.++....... ... .....+...|+.||..+|+.
T Consensus 173 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~ 246 (338)
T 2if4_A 173 EERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRY 246 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 344566677778888889999999999999999976532110 000 00113667788888887764
No 285
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=32.28 E-value=1.4e+02 Score=26.11 Aligned_cols=45 Identities=7% Similarity=-0.127 Sum_probs=34.9
Q ss_pred hccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCCc
Q psy5736 287 MNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGNK 334 (346)
Q Consensus 287 ~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~~ 334 (346)
.. |++++|+..+++.++.+... ........+...|..+|..+|+.
T Consensus 127 ~~-g~~~~A~~~~~~Al~~~~~~--~~~~~~~~~~~~lg~~~~~~g~~ 171 (307)
T 2ifu_A 127 EP-LDLSKAVHLYQQAAAVFENE--ERLRQAAELIGKASRLLVRQQKF 171 (307)
T ss_dssp TT-TCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCH
T ss_pred Hc-CCHHHHHHHHHHHHHHHHhC--CChhHHHHHHHHHHHHHHHcCCH
Confidence 44 89999999999999988763 23345567788888888888874
No 286
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=32.26 E-value=18 Score=24.16 Aligned_cols=28 Identities=21% Similarity=0.451 Sum_probs=17.2
Q ss_pred ccccCCcCcCCcccccccCCcccccCcccccccCCc
Q psy5736 228 RIRCSNDNCGQIIATVKKLEPSAKKVEKKCESCNST 263 (346)
Q Consensus 228 ~~~C~~~~C~g~~~~~~~~~~~~~~~~~~C~~C~~~ 263 (346)
.-.|| .|+..+.-... ...+.|.+||.+
T Consensus 19 ~k~CP--~CG~~~fm~~~------~~R~~C~kCG~t 46 (50)
T 3j20_Y 19 NKFCP--RCGPGVFMADH------GDRWACGKCGYT 46 (50)
T ss_dssp SEECS--SSCSSCEEEEC------SSEEECSSSCCE
T ss_pred cccCC--CCCCceEEecC------CCeEECCCCCCE
Confidence 44688 89764332211 135999999875
No 287
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=31.93 E-value=90 Score=25.93 Aligned_cols=17 Identities=18% Similarity=0.304 Sum_probs=8.1
Q ss_pred ccccHHHHHHHHHHHHH
Q psy5736 288 NTSCFREAVESLTKFSD 304 (346)
Q Consensus 288 ~~~~~~~ai~~l~~~l~ 304 (346)
..|++++|++.+.+.++
T Consensus 89 ~~~~~~~A~~~~~~al~ 105 (275)
T 1xnf_A 89 QAGNFDAAYEAFDSVLE 105 (275)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHh
Confidence 33444445554444444
No 288
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=31.69 E-value=1.4e+02 Score=23.69 Aligned_cols=41 Identities=10% Similarity=-0.107 Sum_probs=24.5
Q ss_pred HhccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHh-CCc
Q psy5736 286 QMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLA-GNK 334 (346)
Q Consensus 286 ~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~-G~~ 334 (346)
.+..|++++|++.+.+.++.. |.+. .+...++.+|... |+.
T Consensus 52 ~~~~~~~~~A~~~~~~a~~~~-----~~~~---~~~~~l~~~~~~~~~~~ 93 (225)
T 2vq2_A 52 YQYLKVNDKAQESFRQALSIK-----PDSA---EINNNYGWFLCGRLNRP 93 (225)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-----TTCH---HHHHHHHHHHHTTTCCH
T ss_pred HHHcCChHHHHHHHHHHHHhC-----CCCh---HHHHHHHHHHHHhcCcH
Confidence 355667777777777776642 3232 3455667777766 654
No 289
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=31.32 E-value=1e+02 Score=24.74 Aligned_cols=46 Identities=11% Similarity=-0.060 Sum_probs=33.0
Q ss_pred HHHHHHhccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCCc
Q psy5736 281 YRGIEQMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGNK 334 (346)
Q Consensus 281 ~~a~~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~~ 334 (346)
..+...+..|++++|++.+.+.++.. |.+ ..+...++.+|...|+.
T Consensus 42 ~lg~~~~~~g~~~~A~~~~~~al~~~-----~~~---~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 42 NIGCMYTILKNMTEAEKAFTRSINRD-----KHL---AVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC---HHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-----ccc---hHHHHHHHHHHHHcccH
Confidence 34455567889999999999998864 333 34666778888887764
No 290
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=31.28 E-value=51 Score=30.47 Aligned_cols=49 Identities=12% Similarity=0.013 Sum_probs=37.1
Q ss_pred HhccccHHHHHHHHHHHHHHhhcccC-CCcHhHHHHHHHHHHHHHHhCCc
Q psy5736 286 QMNTSCFREAVESLTKFSDQIHELVV-PPYKLASLAHEALRNCWSLAGNK 334 (346)
Q Consensus 286 ~~~~~~~~~ai~~l~~~l~~~~~~l~-p~h~~~~~~~~~L~~~y~~~G~~ 334 (346)
....|++++|++.+++.++...+... ..++....+...|+.+|..+|+.
T Consensus 61 ~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~ 110 (472)
T 4g1t_A 61 KHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRL 110 (472)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCCh
Confidence 34569999999999999988776433 24566666777788888888875
No 291
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=30.32 E-value=75 Score=32.74 Aligned_cols=43 Identities=12% Similarity=0.040 Sum_probs=27.9
Q ss_pred HHHhccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCCc
Q psy5736 284 IEQMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGNK 334 (346)
Q Consensus 284 ~~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~~ 334 (346)
.-..+.|++++|++.|++.++.- |.+ ..+...|..+|..+|+.
T Consensus 51 ~~l~~~g~~~eA~~~~~~Al~l~-----P~~---~~a~~nLg~~l~~~g~~ 93 (723)
T 4gyw_A 51 SVLQQQGKLQEALMHYKEAIRIS-----PTF---ADAYSNMGNTLKEMQDV 93 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-----TTC---HHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-----CCC---HHHHHHHHHHHHHcCCH
Confidence 33455677777777777777652 333 35666777777777764
No 292
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=30.06 E-value=25 Score=23.67 Aligned_cols=26 Identities=27% Similarity=0.526 Sum_probs=18.4
Q ss_pred ccccccCCcCcCCcccccccCCcccccCcccccccCCc
Q psy5736 226 PIRIRCSNDNCGQIIATVKKLEPSAKKVEKKCESCNST 263 (346)
Q Consensus 226 ~~~~~C~~~~C~g~~~~~~~~~~~~~~~~~~C~~C~~~ 263 (346)
.....|+ .|...+ +. ..|.|.+||..
T Consensus 12 ~~k~iCp--kC~a~~-~~---------gaw~CrKCG~~ 37 (51)
T 3j21_g 12 FKKYVCL--RCGATN-PW---------GAKKCRKCGYK 37 (51)
T ss_dssp SSEEECT--TTCCEE-CT---------TCSSCSSSSSC
T ss_pred hCCccCC--CCCCcC-CC---------CceecCCCCCc
Confidence 3567899 898762 11 23999999986
No 293
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=30.03 E-value=76 Score=28.10 Aligned_cols=53 Identities=23% Similarity=0.165 Sum_probs=36.3
Q ss_pred HHHHHhccccHHHHHHHHHHHHHHhhcccCCCcHh----HHHHHHHHHHHHHHhCCc
Q psy5736 282 RGIEQMNTSCFREAVESLTKFSDQIHELVVPPYKL----ASLAHEALRNCWSLAGNK 334 (346)
Q Consensus 282 ~a~~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~----~~~~~~~L~~~y~~~G~~ 334 (346)
.+.-....|++++|+..+++.++...+...+.+.. ...+...|..++..+|+.
T Consensus 287 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 343 (365)
T 4eqf_A 287 LGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQP 343 (365)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcH
Confidence 34444667899999999999999887765554332 356778899999988875
No 294
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=29.72 E-value=1.5e+02 Score=25.07 Aligned_cols=53 Identities=11% Similarity=-0.001 Sum_probs=37.4
Q ss_pred HHHHhccccHHHHHHHHHHHHHHhhcccCCCc----HhHHHHHHHHHHHHHHhCCcc
Q psy5736 283 GIEQMNTSCFREAVESLTKFSDQIHELVVPPY----KLASLAHEALRNCWSLAGNKW 335 (346)
Q Consensus 283 a~~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h----~~~~~~~~~L~~~y~~~G~~~ 335 (346)
+.-.+..|++++|++.+++.++.....-.+.+ .....+...++.+|..+|+.-
T Consensus 247 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 303 (327)
T 3cv0_A 247 AVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPD 303 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHH
Confidence 34446678999999999999987755332222 225678889999999998763
No 295
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=29.72 E-value=11 Score=27.01 Aligned_cols=33 Identities=18% Similarity=0.183 Sum_probs=21.8
Q ss_pred ccccccCCcCcCCcccccccCCcccccCcccccccCCcCCh
Q psy5736 226 PIRIRCSNDNCGQIIATVKKLEPSAKKVEKKCESCNSTSDL 266 (346)
Q Consensus 226 ~~~~~C~~~~C~g~~~~~~~~~~~~~~~~~~C~~C~~~~~~ 266 (346)
+.-+.|| .|+|.+..... +....|..|+.....
T Consensus 6 L~iL~CP--~ck~~L~~~~~------~~~LiC~~cg~~YPI 38 (68)
T 2hf1_A 6 LEILVCP--LCKGPLVFDKS------KDELICKGDRLAFPI 38 (68)
T ss_dssp EEECBCT--TTCCBCEEETT------TTEEEETTTTEEEEE
T ss_pred hhheECC--CCCCcCeEeCC------CCEEEcCCCCcEecC
Confidence 3567898 89887665432 123789889886543
No 296
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=29.09 E-value=12 Score=26.80 Aligned_cols=33 Identities=12% Similarity=0.140 Sum_probs=22.3
Q ss_pred ccccccCCcCcCCcccccccCCcccccCcccccccCCcCCh
Q psy5736 226 PIRIRCSNDNCGQIIATVKKLEPSAKKVEKKCESCNSTSDL 266 (346)
Q Consensus 226 ~~~~~C~~~~C~g~~~~~~~~~~~~~~~~~~C~~C~~~~~~ 266 (346)
+.-+.|| .|+|.+..... +....|..|+.....
T Consensus 6 LeiL~CP--~ck~~L~~~~~------~~~LiC~~cg~~YPI 38 (69)
T 2pk7_A 6 LDILACP--ICKGPLKLSAD------KTELISKGAGLAYPI 38 (69)
T ss_dssp GGTCCCT--TTCCCCEECTT------SSEEEETTTTEEEEE
T ss_pred HhheeCC--CCCCcCeEeCC------CCEEEcCCCCcEecC
Confidence 4567899 89887765432 124789999886543
No 297
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=29.08 E-value=1.6e+02 Score=26.45 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=11.7
Q ss_pred HHHHhccccHHHHHHHHHHHHHH
Q psy5736 283 GIEQMNTSCFREAVESLTKFSDQ 305 (346)
Q Consensus 283 a~~~~~~~~~~~ai~~l~~~l~~ 305 (346)
|.-.+..+++++|+..+.+.++.
T Consensus 203 a~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 203 AMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 33344455555555555555543
No 298
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=28.99 E-value=63 Score=30.28 Aligned_cols=50 Identities=16% Similarity=0.232 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCC
Q psy5736 276 LNEMFYRGIEQMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGN 333 (346)
Q Consensus 276 ~~~~~~~a~~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~ 333 (346)
++.++..|...+..|++++|++.+.+.++.. |.++ .+...++.+|..+|+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-----p~~~---~~~~~la~~~~~~g~ 74 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-----PNEP---VFYSNISACYISTGD 74 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-----TTCH---HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-----CCCc---HHHHHHHHHHHHcCC
Confidence 3444445555555566666666666655542 2222 344445555555544
No 299
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=28.79 E-value=32 Score=27.82 Aligned_cols=33 Identities=15% Similarity=0.524 Sum_probs=22.8
Q ss_pred cccCCcCcCCcccccccCCcccccCcccccccCCcCC
Q psy5736 229 IRCSNDNCGQIIATVKKLEPSAKKVEKKCESCNSTSD 265 (346)
Q Consensus 229 ~~C~~~~C~g~~~~~~~~~~~~~~~~~~C~~C~~~~~ 265 (346)
-.|| .|++.+.|..+.+ .....+.|..|+....
T Consensus 25 ~FCP--eCgNmL~pked~~--~~~l~~~CrtCgY~~~ 57 (133)
T 3qt1_I 25 RFCR--DCNNMLYPREDKE--NNRLLFECRTCSYVEE 57 (133)
T ss_dssp CBCT--TTCCBCBCCBCTT--TCCBCCBCSSSCCBCC
T ss_pred eeCC--CCCCEeeECccCC--CceeEEECCCCCCcEE
Confidence 4699 9999998875321 1123599999988654
No 300
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=28.69 E-value=35 Score=25.22 Aligned_cols=15 Identities=7% Similarity=0.153 Sum_probs=9.6
Q ss_pred cccccccCCcCChHH
Q psy5736 254 EKKCESCNSTSDLTE 268 (346)
Q Consensus 254 ~~~C~~C~~~~~~~~ 268 (346)
..-|..|+..++...
T Consensus 51 ~yFC~~C~~LiSkkr 65 (81)
T 2jrp_A 51 DYFCQNGHGLISKKR 65 (81)
T ss_dssp EECCTTTTCCCCTTS
T ss_pred CeeeccCCCEeecce
Confidence 366777777666543
No 301
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=28.50 E-value=13 Score=26.52 Aligned_cols=33 Identities=9% Similarity=-0.015 Sum_probs=22.0
Q ss_pred ccccccCCcCcCCcccccccCCcccccCcccccccCCcCCh
Q psy5736 226 PIRIRCSNDNCGQIIATVKKLEPSAKKVEKKCESCNSTSDL 266 (346)
Q Consensus 226 ~~~~~C~~~~C~g~~~~~~~~~~~~~~~~~~C~~C~~~~~~ 266 (346)
+.-+.|| .|+|.+..... .....|..|+.....
T Consensus 6 L~iL~CP--~ck~~L~~~~~------~~~LiC~~cg~~YPI 38 (68)
T 2jr6_A 6 LDILVCP--VTKGRLEYHQD------KQELWSRQAKLAYPI 38 (68)
T ss_dssp SCCCBCS--SSCCBCEEETT------TTEEEETTTTEEEEE
T ss_pred hhheECC--CCCCcCeEeCC------CCEEEcCCCCcEecC
Confidence 4567898 89887665432 123789899886543
No 302
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=28.30 E-value=1.3e+02 Score=24.03 Aligned_cols=55 Identities=15% Similarity=0.064 Sum_probs=37.4
Q ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhhccc--------CCCcHhHHHHHHHHHHHHHHhCCc
Q psy5736 280 FYRGIEQMNTSCFREAVESLTKFSDQIHELV--------VPPYKLASLAHEALRNCWSLAGNK 334 (346)
Q Consensus 280 ~~~a~~~~~~~~~~~ai~~l~~~l~~~~~~l--------~p~h~~~~~~~~~L~~~y~~~G~~ 334 (346)
+..|.-.+..|++++|++.+.+.++.....- ...++....+...++.+|...|+.
T Consensus 75 ~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 137 (213)
T 1hh8_A 75 FQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEW 137 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCH
Confidence 3445555778999999999999998653321 012334556777888888888764
No 303
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=28.27 E-value=31 Score=25.55 Aligned_cols=19 Identities=26% Similarity=0.478 Sum_probs=15.0
Q ss_pred cccccccCCcCChHHHHHH
Q psy5736 254 EKKCESCNSTSDLTEIKTK 272 (346)
Q Consensus 254 ~~~C~~C~~~~~~~~~~~~ 272 (346)
+.+|+.||+.++.++..++
T Consensus 8 ~~~~PlCG~~L~W~eLIeQ 26 (95)
T 2k5c_A 8 MAKCPICGSPLKWEELIEE 26 (95)
T ss_dssp CEECSSSCCEECHHHHHHH
T ss_pred cccCCcCCCccCHHHHHHH
Confidence 4789999999998775543
No 304
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=28.23 E-value=85 Score=27.26 Aligned_cols=50 Identities=12% Similarity=0.135 Sum_probs=32.8
Q ss_pred cceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736 5 FLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN 64 (346)
Q Consensus 5 ~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~ 64 (346)
.++|.+||.++++.+..+..+. .+..+.+ .+ +...++++..+|.|++|..
T Consensus 274 ~~~v~~~d~~~~~~~~~~~~~~--------~~~~~~~-s~-dg~~l~~~~~~~~v~v~d~ 323 (349)
T 1jmx_B 274 LNRLAKYDLKQRKLIKAANLDH--------TYYCVAF-DK-KGDKLYLGGTFNDLAVFNP 323 (349)
T ss_dssp ESEEEEEETTTTEEEEEEECSS--------CCCEEEE-CS-SSSCEEEESBSSEEEEEET
T ss_pred cCeEEEEECccCeEEEEEcCCC--------CccceEE-CC-CCCEEEEecCCCeEEEEec
Confidence 5789999999988776664322 2445543 33 3344455777899999954
No 305
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=28.16 E-value=1.3e+02 Score=24.53 Aligned_cols=44 Identities=11% Similarity=0.069 Sum_probs=26.4
Q ss_pred HHHHhccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCCc
Q psy5736 283 GIEQMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGNK 334 (346)
Q Consensus 283 a~~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~~ 334 (346)
|.-....|++++|+..+.+.++.. |.+. .+...|..+|...|+.
T Consensus 61 g~~~~~~g~~~~A~~~~~~al~~~-----p~~~---~~~~~lg~~~~~~g~~ 104 (208)
T 3urz_A 61 ALAYKKNRNYDKAYLFYKELLQKA-----PNNV---DCLEACAEMQVCRGQE 104 (208)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-----TTCH---HHHHHHHHHHHHHTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHC-----CCCH---HHHHHHHHHHHHcCCH
Confidence 444456677777777777777653 3332 3455566666666553
No 306
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=28.10 E-value=41 Score=21.98 Aligned_cols=35 Identities=14% Similarity=0.325 Sum_probs=19.5
Q ss_pred cccccCCcCcCCccccccc--CCcccccCcccccccCCc
Q psy5736 227 IRIRCSNDNCGQIIATVKK--LEPSAKKVEKKCESCNST 263 (346)
Q Consensus 227 ~~~~C~~~~C~g~~~~~~~--~~~~~~~~~~~C~~C~~~ 263 (346)
..++|+ .|+-...+... +........|.|+.||..
T Consensus 3 ~~y~C~--vCGyvyd~~~Gd~t~f~~lP~dw~CP~Cg~~ 39 (46)
T 6rxn_A 3 QKYVCN--VCGYEYDPAEHDNVPFDQLPDDWCCPVCGVS 39 (46)
T ss_dssp CCEEET--TTCCEECGGGGTTCCGGGSCTTCBCTTTCCB
T ss_pred CEEECC--CCCeEEeCCcCCCcchhhCCCCCcCcCCCCc
Confidence 457888 88754443211 000011235999999985
No 307
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=27.97 E-value=82 Score=27.89 Aligned_cols=40 Identities=15% Similarity=0.119 Sum_probs=26.7
Q ss_pred hccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCCc
Q psy5736 287 MNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGNK 334 (346)
Q Consensus 287 ~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~~ 334 (346)
...|++++|++.+++.++.. |.+ ..+...|+.+|...|+.
T Consensus 110 ~~~g~~~~A~~~~~~al~~~-----p~~---~~~~~~l~~~~~~~g~~ 149 (365)
T 4eqf_A 110 AENENEQAAIVALQRCLELQ-----PNN---LKALMALAVSYTNTSHQ 149 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-----TTC---HHHHHHHHHHHHHTTCH
T ss_pred HHCCCHHHHHHHHHHHHhcC-----CCC---HHHHHHHHHHHHccccH
Confidence 44577777777777777652 333 34667777888877764
No 308
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=27.59 E-value=13 Score=26.65 Aligned_cols=33 Identities=12% Similarity=0.196 Sum_probs=21.6
Q ss_pred ccccccCCcCcCCcccccccCCcccccCcccccccCCcCCh
Q psy5736 226 PIRIRCSNDNCGQIIATVKKLEPSAKKVEKKCESCNSTSDL 266 (346)
Q Consensus 226 ~~~~~C~~~~C~g~~~~~~~~~~~~~~~~~~C~~C~~~~~~ 266 (346)
+.-+.|| .|+|.+..... +....|..|+.....
T Consensus 6 L~iL~CP--~ck~~L~~~~~------~~~LiC~~cg~~YPI 38 (70)
T 2js4_A 6 LDILVCP--VCKGRLEFQRA------QAELVCNADRLAFPV 38 (70)
T ss_dssp CCCCBCT--TTCCBEEEETT------TTEEEETTTTEEEEE
T ss_pred hhheECC--CCCCcCEEeCC------CCEEEcCCCCceecC
Confidence 4567888 88887655432 123788888876543
No 309
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=27.45 E-value=1.2e+02 Score=24.91 Aligned_cols=17 Identities=24% Similarity=0.303 Sum_probs=7.6
Q ss_pred ccccHHHHHHHHHHHHH
Q psy5736 288 NTSCFREAVESLTKFSD 304 (346)
Q Consensus 288 ~~~~~~~ai~~l~~~l~ 304 (346)
..|++++|++.+.++++
T Consensus 117 ~~g~~~~A~~~~~~~~~ 133 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQ 133 (252)
T ss_dssp HTTCHHHHHHHHHHHTT
T ss_pred HHhHHHHHHHHHHHHHh
Confidence 33444444444444443
No 310
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=27.39 E-value=97 Score=30.30 Aligned_cols=52 Identities=8% Similarity=-0.062 Sum_probs=37.6
Q ss_pred ccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeCC
Q psy5736 4 LFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRNY 65 (346)
Q Consensus 4 ~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~~ 65 (346)
.+++|.|||-.+++.+..+..+. .+..+. +. ++...+.+++.|+.|++|...
T Consensus 157 ~d~~V~v~D~~t~~~~~~i~~g~--------~~~~v~-~s-pdg~~l~v~~~d~~V~v~D~~ 208 (543)
T 1nir_A 157 DAGQIALVDGDSKKIVKVIDTGY--------AVHISR-MS-ASGRYLLVIGRDARIDMIDLW 208 (543)
T ss_dssp GGTEEEEEETTTCCEEEEEECST--------TEEEEE-EC-TTSCEEEEEETTSEEEEEETT
T ss_pred CCCeEEEEECCCceEEEEEecCc--------ccceEE-EC-CCCCEEEEECCCCeEEEEECc
Confidence 46899999999998888775433 133333 23 466777888888999999763
No 311
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=27.32 E-value=97 Score=24.43 Aligned_cols=49 Identities=12% Similarity=-0.031 Sum_probs=33.7
Q ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCCc
Q psy5736 280 FYRGIEQMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGNK 334 (346)
Q Consensus 280 ~~~a~~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~~ 334 (346)
+.-+.-.+..|++++|+..+.+.++.- |.+ .-..+...|..+|..+|+.
T Consensus 112 ~~la~~~~~~g~~~~A~~~~~~~l~~~-----p~~-~~~~a~~~l~~~~~~~g~~ 160 (176)
T 2r5s_A 112 CELAVQYNQVGRDEEALELLWNILKVN-----LGA-QDGEVKKTFMDILSALGQG 160 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTC-----TTT-TTTHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHhC-----ccc-ChHHHHHHHHHHHHHhCCC
Confidence 334455567899999999999888653 322 1124667788888888876
No 312
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=27.04 E-value=1.2e+02 Score=27.54 Aligned_cols=41 Identities=15% Similarity=0.045 Sum_probs=23.3
Q ss_pred HhccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCCc
Q psy5736 286 QMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGNK 334 (346)
Q Consensus 286 ~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~~ 334 (346)
.+..|++++|+..+.+.++.. |.+ ..+...++.+|...|+.
T Consensus 70 ~~~~g~~~~A~~~~~~al~~~-----p~~---~~~~~~l~~~~~~~g~~ 110 (450)
T 2y4t_A 70 FLAMGKSKAALPDLTKVIQLK-----MDF---TAARLQRGHLLLKQGKL 110 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-----TTC---HHHHHHHHHHHHHTTCH
T ss_pred HHHCCCHHHHHHHHHHHHhcC-----CCc---HHHHHHHHHHHHHcCCH
Confidence 345566666666666666542 322 34555666666666654
No 313
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=26.88 E-value=1.5e+02 Score=20.32 Aligned_cols=32 Identities=9% Similarity=0.044 Sum_probs=22.9
Q ss_pred HHHHHHhccccHHHHHHHHHHHHHHhhcccCCCcHhH
Q psy5736 281 YRGIEQMNTSCFREAVESLTKFSDQIHELVVPPYKLA 317 (346)
Q Consensus 281 ~~a~~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~ 317 (346)
..|.-.+..|++++|++.+++.++.. |.+...
T Consensus 40 ~lg~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~ 71 (99)
T 2kc7_A 40 LMGNAYRKLGDWQKALNNYQSAIELN-----PDSPAL 71 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-----TTSTHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC-----CCcHHH
Confidence 34445566789999999999999764 555543
No 314
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=26.65 E-value=99 Score=26.55 Aligned_cols=50 Identities=14% Similarity=0.134 Sum_probs=33.9
Q ss_pred cceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736 5 FLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN 64 (346)
Q Consensus 5 ~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~ 64 (346)
++.|.+||..+++.+..+..+ ..+..+.+ . .+...+.+++.+|.|++|..
T Consensus 259 ~~~v~~~d~~~~~~~~~~~~~--------~~~~~~~~-s-~dg~~l~~~~~~~~i~v~d~ 308 (337)
T 1pby_B 259 YNVLESFDLEKNASIKRVPLP--------HSYYSVNV-S-TDGSTVWLGGALGDLAAYDA 308 (337)
T ss_dssp ESEEEEEETTTTEEEEEEECS--------SCCCEEEE-C-TTSCEEEEESBSSEEEEEET
T ss_pred CCeEEEEECCCCcCcceecCC--------CceeeEEE-C-CCCCEEEEEcCCCcEEEEEC
Confidence 478999999998877666432 23445543 2 34455566788999999954
No 315
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=26.56 E-value=82 Score=25.98 Aligned_cols=40 Identities=8% Similarity=-0.205 Sum_probs=19.1
Q ss_pred hccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCCc
Q psy5736 287 MNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGNK 334 (346)
Q Consensus 287 ~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~~ 334 (346)
...|++++|++.+++.++.. |.+ ..+...++.+|...|+.
T Consensus 82 ~~~~~~~~A~~~~~~a~~~~-----~~~---~~~~~~la~~~~~~g~~ 121 (252)
T 2ho1_A 82 QTEMEPKLADEEYRKALASD-----SRN---ARVLNNYGGFLYEQKRY 121 (252)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-----TTC---HHHHHHHHHHHHHTTCH
T ss_pred HHcCCHHHHHHHHHHHHHHC-----cCc---HHHHHHHHHHHHHHhHH
Confidence 34455555555555555442 222 23444555555555543
No 316
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=26.44 E-value=58 Score=25.85 Aligned_cols=22 Identities=18% Similarity=0.225 Sum_probs=10.7
Q ss_pred HHHHhccccHHHHHHHHHHHHH
Q psy5736 283 GIEQMNTSCFREAVESLTKFSD 304 (346)
Q Consensus 283 a~~~~~~~~~~~ai~~l~~~l~ 304 (346)
+...+..|++++|+..+++.++
T Consensus 13 a~~~~~~g~~~~A~~~~~~al~ 34 (176)
T 2r5s_A 13 VSELLQQGEHAQALNVIQTLSD 34 (176)
T ss_dssp HHHHHHTTCHHHHHHHHHTSCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 3334445555555555544443
No 317
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=26.29 E-value=1.2e+02 Score=25.79 Aligned_cols=52 Identities=8% Similarity=-0.006 Sum_probs=34.4
Q ss_pred HHHHhccccHHHHHHHHHHHHHHhhcccCCCc-HhHHHHHHHHHHHHHHhCCc
Q psy5736 283 GIEQMNTSCFREAVESLTKFSDQIHELVVPPY-KLASLAHEALRNCWSLAGNK 334 (346)
Q Consensus 283 a~~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h-~~~~~~~~~L~~~y~~~G~~ 334 (346)
+.-.+..|++++|+..+++.++...+.-.+.. +....+...++.+|...|+.
T Consensus 200 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 200 GVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 44456678899999999999988765443322 22234556677777777764
No 318
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=26.29 E-value=84 Score=26.00 Aligned_cols=47 Identities=15% Similarity=0.032 Sum_probs=31.4
Q ss_pred HHHHHHhccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCCcc
Q psy5736 281 YRGIEQMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGNKW 335 (346)
Q Consensus 281 ~~a~~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~~~ 335 (346)
..+.-.+..|++++|+..+++.++. .|.++ .+...|+.+|...|+.-
T Consensus 156 ~la~~~~~~g~~~~A~~~~~~al~~-----~P~~~---~~~~~la~~~~~~g~~~ 202 (217)
T 2pl2_A 156 ALAELYLSMGRLDEALAQYAKALEQ-----APKDL---DLRVRYASALLLKGKAE 202 (217)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH-----STTCH---HHHHHHHHHHTC-----
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCh---HHHHHHHHHHHHccCHH
Confidence 3444456778999999999999985 35554 56678888888888753
No 319
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=26.11 E-value=1.2e+02 Score=26.49 Aligned_cols=49 Identities=10% Similarity=-0.008 Sum_probs=36.3
Q ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCCc
Q psy5736 280 FYRGIEQMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGNK 334 (346)
Q Consensus 280 ~~~a~~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~~ 334 (346)
+.-|.-.+..|++++|+..|.++++.- |.+ .-..++..|..+|..+|+.
T Consensus 223 ~~la~~l~~~g~~~~A~~~l~~~l~~~-----p~~-~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 223 TQLALQLHQVGRNEEALELLFGHLRXD-----LTA-ADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTG-GGGHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcc-----ccc-ccchHHHHHHHHHHHcCCC
Confidence 444555677899999999999999864 333 2246788888899988875
No 320
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=25.92 E-value=57 Score=30.99 Aligned_cols=12 Identities=17% Similarity=0.199 Sum_probs=7.0
Q ss_pred EeeecCCceEEE
Q psy5736 51 LTGYDDGSLSVY 62 (346)
Q Consensus 51 l~g~~dG~vri~ 62 (346)
.+|..||.+++|
T Consensus 176 ~vg~~dg~i~~~ 187 (388)
T 1xip_A 176 AVLLKDRSFQSF 187 (388)
T ss_dssp EEEETTSCEEEE
T ss_pred EEEEcCCcEEEE
Confidence 345566666666
No 321
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=25.59 E-value=30 Score=23.49 Aligned_cols=29 Identities=21% Similarity=0.438 Sum_probs=19.1
Q ss_pred cccccCCcCcCCcccccccCCcccccCcccccccCCc
Q psy5736 227 IRIRCSNDNCGQIIATVKKLEPSAKKVEKKCESCNST 263 (346)
Q Consensus 227 ~~~~C~~~~C~g~~~~~~~~~~~~~~~~~~C~~C~~~ 263 (346)
....|| .|++.+..... ...+.|.+|+.+
T Consensus 17 ~~~fCP--kCG~~~~ma~~------~dr~~C~kCgyt 45 (55)
T 2k4x_A 17 KHRFCP--RCGPGVFLAEH------ADRYSCGRCGYT 45 (55)
T ss_dssp SSCCCT--TTTTTCCCEEC------SSEEECTTTCCC
T ss_pred ccccCc--CCCCceeEecc------CCEEECCCCCCE
Confidence 357799 89875543321 125999999875
No 322
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=25.43 E-value=2.2e+02 Score=24.58 Aligned_cols=46 Identities=11% Similarity=0.062 Sum_probs=33.4
Q ss_pred hcc-ccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCCc
Q psy5736 287 MNT-SCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGNK 334 (346)
Q Consensus 287 ~~~-~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~~ 334 (346)
... |++++|+..+.+.++.+...- .......+...|..+|..+|+.
T Consensus 128 ~~~lg~~~~A~~~~~~Al~~~~~~~--~~~~~~~~~~~lg~~~~~~g~~ 174 (292)
T 1qqe_A 128 ENDLHDYAKAIDCYELAGEWYAQDQ--SVALSNKCFIKCADLKALDGQY 174 (292)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHhhcCHHHHHHHHHHHHHHHHhCC--ChHHHHHHHHHHHHHHHHhCCH
Confidence 444 899999999999999886532 2233456677788888888764
No 323
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=25.01 E-value=95 Score=26.78 Aligned_cols=51 Identities=14% Similarity=0.202 Sum_probs=29.7
Q ss_pred cccceEEEEecCC-C--ceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeec-CCceEEEe
Q psy5736 3 GLFLKEGIWDHIT-G--SRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYD-DGSLSVYR 63 (346)
Q Consensus 3 ~~~~~~~~w~~~~-~--~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~-dG~vri~r 63 (346)
+-+++|.|||... + +.+..+. +...+..+.+ . ++...++++.. +|.+++|.
T Consensus 12 ~~~~~v~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~-s-pdg~~l~~~~~~~~~v~~~~ 66 (343)
T 1ri6_A 12 PESQQIHVWNLNHEGALTLTQVVD--------VPGQVQPMVV-S-PDKRYLYVGVRPEFRVLAYR 66 (343)
T ss_dssp GGGTEEEEEEECTTSCEEEEEEEE--------CSSCCCCEEE-C-TTSSEEEEEETTTTEEEEEE
T ss_pred CCCCeEEEEEECCCCcEEEeeeEe--------cCCCCceEEE-C-CCCCEEEEeecCCCeEEEEE
Confidence 4578999999963 3 2233332 2334556654 3 34454455555 48999884
No 324
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=24.86 E-value=1.1e+02 Score=25.40 Aligned_cols=47 Identities=13% Similarity=0.107 Sum_probs=0.0
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCC
Q psy5736 279 MFYRGIEQMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGN 333 (346)
Q Consensus 279 ~~~~a~~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~ 333 (346)
++..|...+..|++++|+..+.+.++....... +...++.+|...|+
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~--------~~~~l~~~~~~~~~ 52 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPY--------IYNRRAVCYYELAK 52 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCST--------THHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHH--------HHHHHHHHHHHHhh
No 325
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=24.79 E-value=2e+02 Score=21.57 Aligned_cols=44 Identities=23% Similarity=0.290 Sum_probs=31.6
Q ss_pred HHHHhccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCCc
Q psy5736 283 GIEQMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGNK 334 (346)
Q Consensus 283 a~~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~~ 334 (346)
+.-....|++++|++.+++.++.. |.+ ..+...++.+|...|+.
T Consensus 117 a~~~~~~~~~~~A~~~~~~~~~~~-----~~~---~~~~~~la~~~~~~~~~ 160 (186)
T 3as5_A 117 GVALDNLGRFDEAIDSFKIALGLR-----PNE---GKVHRAIAFSYEQMGRH 160 (186)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-----TTC---HHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCcHHHHHHHHHHHHhcC-----ccc---hHHHHHHHHHHHHcCCH
Confidence 334456788999999999988764 333 34667788888888764
No 326
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=24.70 E-value=1e+02 Score=29.64 Aligned_cols=43 Identities=14% Similarity=0.133 Sum_probs=21.4
Q ss_pred HHHHhccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCC
Q psy5736 283 GIEQMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGN 333 (346)
Q Consensus 283 a~~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~ 333 (346)
|...+..+++++|++.+++.++. .|.+ ..+...|+.+|..+|+
T Consensus 47 g~~~~~~g~~~~A~~~~~~al~l-----~p~~---~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 47 SLAYLRTECYGYALGDATRAIEL-----DKKY---IKGYYRRAASNMALGK 89 (477)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHS-----CTTC---HHHHHHHHHHHHHHTC
T ss_pred HHHHHHhcCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCC
Confidence 33344556666666666666554 2322 2344445555555544
No 327
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=24.40 E-value=1.7e+02 Score=22.09 Aligned_cols=40 Identities=18% Similarity=0.056 Sum_probs=24.5
Q ss_pred hccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCCc
Q psy5736 287 MNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGNK 334 (346)
Q Consensus 287 ~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~~ 334 (346)
...+++++|++.+.+.++.. |.++ .+...++.+|...|+.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-----~~~~---~~~~~~a~~~~~~~~~ 126 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-----PINF---NVRFRLGVALDNLGRF 126 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-----TTCH---HHHHHHHHHHHHTTCH
T ss_pred HHhcCHHHHHHHHHHHHhcC-----cHhH---HHHHHHHHHHHHcCcH
Confidence 44566777777777766652 3333 4556677777777664
No 328
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.17 E-value=1.8e+02 Score=22.91 Aligned_cols=43 Identities=9% Similarity=0.050 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhc
Q psy5736 266 LTEIKTKLSELNEMFYRGIEQMNTSCFREAVESLTKFSDQIHE 308 (346)
Q Consensus 266 ~~~~~~~l~~~~~~~~~a~~~~~~~~~~~ai~~l~~~l~~~~~ 308 (346)
...+...-.++...+.+|++.=+.|+.++|+++|.+-|..+.+
T Consensus 12 l~~ik~~h~~AF~~Is~AL~~DE~g~k~~Al~lYk~GI~eLe~ 54 (116)
T 2dl1_A 12 IKIIREAYKKAFLFVNKGLNTDELGQKEEAKNYYKQGIGHLLR 54 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHH
Confidence 3344555566667777777776778899999999999988876
No 329
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=24.13 E-value=1.1e+02 Score=28.23 Aligned_cols=45 Identities=18% Similarity=0.124 Sum_probs=31.8
Q ss_pred HHHHHhccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCCc
Q psy5736 282 RGIEQMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGNK 334 (346)
Q Consensus 282 ~a~~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~~ 334 (346)
.|.-.+..+++++|++.+.+.++. .|.+ ..+...++.+|..+|+.
T Consensus 279 la~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~a~~~lg~~~~~~g~~ 323 (370)
T 1ihg_A 279 IGACKLKMSDWQGAVDSCLEALEI-----DPSN---TKALYRRAQGWQGLKEY 323 (370)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTT-----CTTC---HHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhccCHHHHHHHHHHHHHh-----Cchh---HHHHHHHHHHHHHccCH
Confidence 344456678899999999888874 2433 45667788888888764
No 330
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=23.87 E-value=1.5e+02 Score=21.51 Aligned_cols=43 Identities=14% Similarity=0.121 Sum_probs=29.4
Q ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHH
Q psy5736 280 FYRGIEQMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNC 327 (346)
Q Consensus 280 ~~~a~~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~ 327 (346)
+--+...++.|++++|+..++++++.- |..+....+...|.+.
T Consensus 47 ~~lg~~~~~~g~y~~Ai~~w~~~l~~~-----p~~~~~~~i~~~I~~A 89 (93)
T 3bee_A 47 SLIANDHFISFRFQEAIDTWVLLLDSN-----DPNLDRVTIIESINKA 89 (93)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTCC-----CTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-----CCCccHHHHHHHHHHH
Confidence 344566788999999999999988753 2244455555555554
No 331
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=23.72 E-value=1.4e+02 Score=25.60 Aligned_cols=56 Identities=9% Similarity=-0.228 Sum_probs=35.4
Q ss_pred cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736 3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN 64 (346)
Q Consensus 3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~ 64 (346)
+.+++|.+||.++++.+..+..+... ..+..+. +.++...+.++++.++.|.+|..
T Consensus 8 ~~~~~v~~~d~~~~~~~~~~~~~~~~-----~~~~~~~-~s~dg~~l~v~~~~~~~v~~~d~ 63 (337)
T 1pby_B 8 ARPDKLVVIDTEKMAVDKVITIADAG-----PTPMVPM-VAPGGRIAYATVNKSESLVKIDL 63 (337)
T ss_dssp ETTTEEEEEETTTTEEEEEEECTTCT-----TCCCCEE-ECTTSSEEEEEETTTTEEEEEET
T ss_pred CCCCeEEEEECCCCcEEEEEEcCCCC-----CCccceE-EcCCCCEEEEEeCCCCeEEEEEC
Confidence 35789999999999888776533210 0234444 33344455566667888988853
No 332
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=23.59 E-value=1.4e+02 Score=22.68 Aligned_cols=34 Identities=15% Similarity=0.138 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhc
Q psy5736 275 ELNEMFYRGIEQMNTSCFREAVESLTKFSDQIHE 308 (346)
Q Consensus 275 ~~~~~~~~a~~~~~~~~~~~ai~~l~~~l~~~~~ 308 (346)
.+...-++|.+.+..|+|++||+..++...-+..
T Consensus 14 ~AH~~~RrAe~ll~~gkydeAIech~kAa~yL~e 47 (97)
T 2crb_A 14 LAHQQSRRADRLLAAGKYEEAISCHRKATTYLSE 47 (97)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhhHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 3444446777888999999999888777655554
No 333
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=23.53 E-value=26 Score=22.58 Aligned_cols=19 Identities=37% Similarity=0.690 Sum_probs=14.4
Q ss_pred ccccccCCcCChHHHHHHH
Q psy5736 255 KKCESCNSTSDLTEIKTKL 273 (346)
Q Consensus 255 ~~C~~C~~~~~~~~~~~~l 273 (346)
-.|..||+.+..+.+...|
T Consensus 18 RvC~~CgkPi~lsAIvdHL 36 (44)
T 2lo3_A 18 RVCEKCGKPLALTAIVDHL 36 (44)
T ss_dssp EECTTTCCEEETTTHHHHH
T ss_pred hhhcccCCcchHHHHHHHH
Confidence 5799999998877655444
No 334
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=23.37 E-value=1e+02 Score=30.07 Aligned_cols=55 Identities=15% Similarity=0.088 Sum_probs=35.6
Q ss_pred cceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeee-cCCceEEEeC
Q psy5736 5 FLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGY-DDGSLSVYRN 64 (346)
Q Consensus 5 ~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~-~dG~vri~r~ 64 (346)
+++|.|||..+++.+-.+.-+.. +|..+... +..++...+..++. .|+.|++|..
T Consensus 345 ~~~v~v~D~~tg~l~~~i~~g~~---ph~g~g~~--~~~p~~g~~~~s~~~~d~~V~v~d~ 400 (543)
T 1nir_A 345 SNKVAVIDSKDRRLSALVDVGKT---PHPGRGAN--FVHPKYGPVWSTSHLGDGSISLIGT 400 (543)
T ss_dssp GTEEEEEETTTTEEEEEEECSSS---BCCTTCEE--EEETTTEEEEEEEBSSSSEEEEEEC
T ss_pred CCeEEEEECCCCeEEEeeccCCC---CCCCCCcc--cCCCCCccEEEeccCCCceEEEEEe
Confidence 57999999999987766654432 24333322 23444466666665 6899999954
No 335
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=23.37 E-value=1e+02 Score=25.43 Aligned_cols=19 Identities=11% Similarity=0.139 Sum_probs=10.3
Q ss_pred hccccHHHHHHHHHHHHHH
Q psy5736 287 MNTSCFREAVESLTKFSDQ 305 (346)
Q Consensus 287 ~~~~~~~~ai~~l~~~l~~ 305 (346)
+..|++++|+..+++.++.
T Consensus 50 ~~~g~~~~A~~~~~~al~~ 68 (217)
T 2pl2_A 50 LKLGLVNPALENGKTLVAR 68 (217)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 4445555555555555554
No 336
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=23.29 E-value=1.6e+02 Score=23.87 Aligned_cols=42 Identities=14% Similarity=0.142 Sum_probs=25.7
Q ss_pred HhccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCCcc
Q psy5736 286 QMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGNKW 335 (346)
Q Consensus 286 ~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~~~ 335 (346)
....|++++|++.+.+.++.. |.++. ....++.+|..+|..+
T Consensus 86 ~~~~~~~~~A~~~~~~al~~~-----p~~~~---~~~~~~~~~~~~g~~~ 127 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKAV-----PGNAT---IEKLYAIYYLKEGQKF 127 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-----TTCHH---HHHHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHC-----CCcHH---HHHHHHHHHHHHhHHH
Confidence 355677777877777777654 44443 3345556666666543
No 337
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=23.27 E-value=1.3e+02 Score=25.60 Aligned_cols=40 Identities=18% Similarity=-0.009 Sum_probs=27.0
Q ss_pred hccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCCc
Q psy5736 287 MNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGNK 334 (346)
Q Consensus 287 ~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~~ 334 (346)
...|++++|++.+++.++.. |.+ ..+...++.+|...|+.
T Consensus 66 ~~~~~~~~A~~~~~~a~~~~-----~~~---~~~~~~la~~~~~~~~~ 105 (327)
T 3cv0_A 66 AENEKDGLAIIALNHARMLD-----PKD---IAVHAALAVSHTNEHNA 105 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-----TTC---HHHHHHHHHHHHHTTCH
T ss_pred HHcCCHHHHHHHHHHHHhcC-----cCC---HHHHHHHHHHHHHcCCH
Confidence 45677777888777777652 333 34566777888877765
No 338
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=23.25 E-value=33 Score=26.78 Aligned_cols=34 Identities=12% Similarity=0.394 Sum_probs=22.9
Q ss_pred cccCCcCcCCcccccccCCcccccCcccccccCCcCCh
Q psy5736 229 IRCSNDNCGQIIATVKKLEPSAKKVEKKCESCNSTSDL 266 (346)
Q Consensus 229 ~~C~~~~C~g~~~~~~~~~~~~~~~~~~C~~C~~~~~~ 266 (346)
..|| .|++.+.|..+.. .....+.|..|+.....
T Consensus 5 ~FCp--~Cgn~L~~~~~~~--~~~~~~~C~~C~y~~~~ 38 (113)
T 3h0g_I 5 QYCI--ECNNMLYPREDKV--DRVLRLACRNCDYSEIA 38 (113)
T ss_dssp CCCS--SSCCCCEECCCTT--TCCCCEECSSSCCEECC
T ss_pred eeCc--CCCCEeeEcccCC--CCeeEEECCCCCCeEEc
Confidence 3588 9999888775421 11235999999886543
No 339
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=23.24 E-value=1.1e+02 Score=26.91 Aligned_cols=40 Identities=15% Similarity=0.057 Sum_probs=26.6
Q ss_pred hccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCCc
Q psy5736 287 MNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGNK 334 (346)
Q Consensus 287 ~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~~ 334 (346)
+..|++++|++.+.+.++.. |.+ ..+...++.+|...|+.
T Consensus 109 ~~~g~~~~A~~~~~~al~~~-----~~~---~~~~~~l~~~~~~~g~~ 148 (368)
T 1fch_A 109 AENEQELLAISALRRCLELK-----PDN---QTALMALAVSFTNESLQ 148 (368)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-----TTC---HHHHHHHHHHHHHTTCH
T ss_pred HHCcCHHHHHHHHHHHHhcC-----CCC---HHHHHHHHHHHHHcCCH
Confidence 45577777777777777653 333 34666777788877765
No 340
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=23.00 E-value=37 Score=24.06 Aligned_cols=32 Identities=9% Similarity=-0.032 Sum_probs=20.8
Q ss_pred ccccccCCcCcCCcccccccCCcccccCcccccccCCcCC
Q psy5736 226 PIRIRCSNDNCGQIIATVKKLEPSAKKVEKKCESCNSTSD 265 (346)
Q Consensus 226 ~~~~~C~~~~C~g~~~~~~~~~~~~~~~~~~C~~C~~~~~ 265 (346)
+.-+.|| .|+|.+..... +....|..|+....
T Consensus 8 LeiL~CP--~ck~~L~~~~~------~g~LvC~~c~~~YP 39 (67)
T 2jny_A 8 LEVLACP--KDKGPLRYLES------EQLLVNERLNLAYR 39 (67)
T ss_dssp TCCCBCT--TTCCBCEEETT------TTEEEETTTTEEEE
T ss_pred HHHhCCC--CCCCcCeEeCC------CCEEEcCCCCcccc
Confidence 4567888 88887655432 12377888887654
No 341
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=22.86 E-value=38 Score=24.01 Aligned_cols=31 Identities=19% Similarity=0.510 Sum_probs=15.6
Q ss_pred ccccccCCcCcCCc-ccccccCCcccccCcccccccCCcC
Q psy5736 226 PIRIRCSNDNCGQI-IATVKKLEPSAKKVEKKCESCNSTS 264 (346)
Q Consensus 226 ~~~~~C~~~~C~g~-~~~~~~~~~~~~~~~~~C~~C~~~~ 264 (346)
+..++|| .|.+. +..+.. .....|..|+..+
T Consensus 5 Fm~VKCp--~C~niq~VFShA------~tvV~C~~Cg~~L 36 (66)
T 1qxf_A 5 FVKVKCP--DCEHEQVIFDHP------STIVKCIICGRTV 36 (66)
T ss_dssp EEEEECT--TTCCEEEEESSC------SSCEECSSSCCEE
T ss_pred eEEEECC--CCCCceEEEecC------ceEEEcccCCCEE
Confidence 4556777 67543 122221 1236677776643
No 342
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=22.26 E-value=1.4e+02 Score=24.60 Aligned_cols=18 Identities=17% Similarity=0.063 Sum_probs=10.1
Q ss_pred hccccHHHHHHHHHHHHH
Q psy5736 287 MNTSCFREAVESLTKFSD 304 (346)
Q Consensus 287 ~~~~~~~~ai~~l~~~l~ 304 (346)
+..|++++|++.+.+.++
T Consensus 122 ~~~g~~~~A~~~~~~a~~ 139 (275)
T 1xnf_A 122 YYGGRDKLAQDDLLAFYQ 139 (275)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHH
Confidence 344555566665555555
No 343
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=22.25 E-value=60 Score=23.39 Aligned_cols=11 Identities=27% Similarity=0.595 Sum_probs=9.1
Q ss_pred cccccccCCcC
Q psy5736 254 EKKCESCNSTS 264 (346)
Q Consensus 254 ~~~C~~C~~~~ 264 (346)
.|.|.+|++.+
T Consensus 44 IW~C~~C~~~~ 54 (72)
T 3jyw_9 44 IWTCSCCKKTV 54 (72)
T ss_dssp CBCCSSSCCCC
T ss_pred eEECCCCCCEE
Confidence 49999998865
No 344
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=22.25 E-value=2e+02 Score=20.00 Aligned_cols=44 Identities=23% Similarity=0.197 Sum_probs=30.9
Q ss_pred HHHHhccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCCc
Q psy5736 283 GIEQMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGNK 334 (346)
Q Consensus 283 a~~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~~ 334 (346)
+.-....|++++|++.+.+.++.. |.+. .+...++.+|...|+.
T Consensus 76 ~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~---~~~~~la~~~~~~~~~ 119 (136)
T 2fo7_A 76 GNAYYKQGDYDEAIEYYQKALELD-----PRSA---EAWYNLGNAYYKQGDY 119 (136)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHC-----TTCH---HHHHHHHHHHHTTTCH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhC-----CCCh---HHHHHHHHHHHHHccH
Confidence 334466788999999999988753 3332 3556678888887764
No 345
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=22.17 E-value=1.8e+02 Score=23.39 Aligned_cols=40 Identities=10% Similarity=-0.067 Sum_probs=24.0
Q ss_pred hccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCCc
Q psy5736 287 MNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGNK 334 (346)
Q Consensus 287 ~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~~ 334 (346)
+..|++++|++.+++.++.. |.+. .+...++.+|...|+.
T Consensus 102 ~~~~~~~~A~~~~~~~~~~~-----~~~~---~~~~~~a~~~~~~~~~ 141 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRAG-----MENG---DLFYMLGTVLVKLEQP 141 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHT-----CCSH---HHHHHHHHHHHHTSCH
T ss_pred HHhccHHHHHHHHHHHHHhC-----CCCH---HHHHHHHHHHHHhccH
Confidence 44566777777777766643 3332 3455666777776654
No 346
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=22.10 E-value=1.7e+02 Score=25.86 Aligned_cols=52 Identities=10% Similarity=0.186 Sum_probs=37.2
Q ss_pred ceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEe
Q psy5736 6 LKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYR 63 (346)
Q Consensus 6 ~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r 63 (346)
.+|.+||..+++.+..|..... +......|.+ .+ +..+.++.+.++.|++|.
T Consensus 268 ~~v~~~~~~~g~~~~~~~~~~~----~~~~p~~ia~-~~-dG~lyvad~~~~~I~~~~ 319 (329)
T 3fvz_A 268 VQGFVMNFSSGEIIDVFKPVRK----HFDMPHDIVA-SE-DGTVYIGDAHTNTVWKFT 319 (329)
T ss_dssp CCEEEEETTTCCEEEEECCSSS----CCSSEEEEEE-CT-TSEEEEEESSSCCEEEEE
T ss_pred cEEEEEEcCCCeEEEEEcCCCC----ccCCeeEEEE-CC-CCCEEEEECCCCEEEEEe
Confidence 4899999999998888853322 3345666664 33 347888888899999884
No 347
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=21.66 E-value=1.6e+02 Score=27.92 Aligned_cols=46 Identities=11% Similarity=-0.078 Sum_probs=31.8
Q ss_pred HHHHHHhccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCCc
Q psy5736 281 YRGIEQMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGNK 334 (346)
Q Consensus 281 ~~a~~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~~ 334 (346)
..|...+..+++++|+..+.+.|+.. |.+ ..+...++.+|..+|+.
T Consensus 322 nla~~~~~~g~~~~A~~~~~~al~~~-----p~~---~~a~~~~g~a~~~~g~~ 367 (457)
T 1kt0_A 322 NLAMCYLKLREYTKAVECCDKALGLD-----SAN---EKGLYRRGEAQLLMNEF 367 (457)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-----TTC---HHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcC-----Ccc---HHHHHHHHHHHHHccCH
Confidence 44555567788888999888888753 333 34566777777777764
No 348
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=21.59 E-value=1.3e+02 Score=30.79 Aligned_cols=40 Identities=18% Similarity=0.206 Sum_probs=24.5
Q ss_pred hccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCCc
Q psy5736 287 MNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGNK 334 (346)
Q Consensus 287 ~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~~ 334 (346)
.+.|++++|++.|++.++. .|.++ .+...|+.+|..+|+.
T Consensus 122 ~~~g~~~eAi~~~~~Al~l-----~P~~~---~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 122 KDSGNIPEAIASYRTALKL-----KPDFP---DAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHTTCHHHHHHHHHHHHHH-----CSCCH---HHHHHHHHHHHHTTCC
T ss_pred HHcCCHHHHHHHHHHHHHh-----CCCCh---HHHhhhhhHHHhcccH
Confidence 4456666777777666654 24333 4566677777777665
No 349
>3iqc_A FLIS, flagellar protein; chaperone, flagellum; 2.70A {Helicobacter pylori} SCOP: a.24.19.0 PDB: 3k1i_A
Probab=21.45 E-value=3e+02 Score=21.69 Aligned_cols=64 Identities=8% Similarity=0.007 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhcccCCCcHh-HHHHHHHHHHHHHHh
Q psy5736 268 EIKTKLSELNEMFYRGIEQMNTSCFREAVESLTKFSDQIHELVVPPYKL-ASLAHEALRNCWSLA 331 (346)
Q Consensus 268 ~~~~~l~~~~~~~~~a~~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~-~~~~~~~L~~~y~~~ 331 (346)
-+.-.++.+...+..|...|+.++++++-..+.+.+..+..+..-=.+. -...-..|..+|..+
T Consensus 28 Li~mLydgal~~l~~A~~ai~~~d~~~k~~~i~KA~~Ii~~L~~sLd~e~GgeiA~nL~~LY~y~ 92 (131)
T 3iqc_A 28 LIEMLYEGILRFSSQAKRCIENEDIEKKIYYINRVTDIFTELLNILDYEKGGEVAVYLTGLYTHQ 92 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTBCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHH
Confidence 3444456677777888888999999887666666665554433222332 245555666666554
No 350
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=21.41 E-value=3e+02 Score=21.66 Aligned_cols=49 Identities=10% Similarity=0.179 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHH
Q psy5736 277 NEMFYRGIEQMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSL 330 (346)
Q Consensus 277 ~~~~~~a~~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~ 330 (346)
+-+|--|+..+..|+|++|++++..+|+.- |.|.--...+..+..-..+
T Consensus 75 d~lY~LAvg~yklg~Y~~A~~~~~~lL~~e-----P~n~QA~~Lk~~i~~~i~k 123 (126)
T 1nzn_A 75 DYVFYLAVGNYRLKEYEKALKYVRGLLQTE-----PQNNQAKELERLIDKAMKK 123 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHHHh
Confidence 345666788889999999999999999864 8888777777777665544
No 351
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=21.14 E-value=56 Score=23.62 Aligned_cols=31 Identities=19% Similarity=0.482 Sum_probs=20.5
Q ss_pred cccccCCcCcCCcccccccCCcccccCccccc-----ccCCc
Q psy5736 227 IRIRCSNDNCGQIIATVKKLEPSAKKVEKKCE-----SCNST 263 (346)
Q Consensus 227 ~~~~C~~~~C~g~~~~~~~~~~~~~~~~~~C~-----~C~~~ 263 (346)
...+||.+.|+..+..... .....|+ .|+..
T Consensus 24 ~~~~CP~p~C~~~v~~~~~------~~~v~C~~~~~~~C~~~ 59 (80)
T 2jmo_A 24 GGVLCPRPGCGAGLLPEPD------QRKVTCEGGNGLGCGFA 59 (80)
T ss_dssp SSCCCCSSSCCCCCCCCSC------TTSBCTTSSSTTCCSCC
T ss_pred CcEECCCCCCCcccEECCC------CCcCCCCCCCCCCCCCe
Confidence 3678999899887754421 1237787 78764
No 352
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=21.12 E-value=1.6e+02 Score=25.46 Aligned_cols=55 Identities=5% Similarity=-0.118 Sum_probs=34.5
Q ss_pred cccceEEEEecCCCceeeeeCCCCCCCCCCCCcccceeccccCCCceEEeeecCCceEEEeC
Q psy5736 3 GLFLKEGIWDHITGSRLISWRPDRGSWARNSARCTALTLLNEHDDSLLLTGYDDGSLSVYRN 64 (346)
Q Consensus 3 ~~~~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~t~l~~ine~~~~lll~g~~dG~vri~r~ 64 (346)
+..++|.|||..+++.+..+.-+.. .....+.+ .++...+.++++.++.|.+|..
T Consensus 18 ~~~~~v~~~d~~~~~~~~~~~~~~~------~~~~~~~~-s~dg~~~~v~~~~~~~i~~~d~ 72 (349)
T 1jmx_B 18 NYPNNLHVVDVASDTVYKSCVMPDK------FGPGTAMM-APDNRTAYVLNNHYGDIYGIDL 72 (349)
T ss_dssp ETTTEEEEEETTTTEEEEEEECSSC------CSSCEEEE-CTTSSEEEEEETTTTEEEEEET
T ss_pred CCCCeEEEEECCCCcEEEEEecCCC------CCCceeEE-CCCCCEEEEEeCCCCcEEEEeC
Confidence 3478999999999987776643321 12344443 3333345555667888888853
No 353
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=21.03 E-value=1.4e+02 Score=28.37 Aligned_cols=47 Identities=21% Similarity=0.167 Sum_probs=27.4
Q ss_pred HHHHHHHhccccH-HHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCCc
Q psy5736 280 FYRGIEQMNTSCF-REAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGNK 334 (346)
Q Consensus 280 ~~~a~~~~~~~~~-~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~~ 334 (346)
+..|...+..+++ ++|++.+.+.++.. |.+ ..+...|+.+|...|+.
T Consensus 106 ~~lg~~~~~~g~~~~~A~~~~~~al~~~-----p~~---~~a~~~lg~~~~~~g~~ 153 (474)
T 4abn_A 106 MLKGKALNVTPDYSPEAEVLLSKAVKLE-----PEL---VEAWNQLGEVYWKKGDV 153 (474)
T ss_dssp HHHHHHHTSSSSCCHHHHHHHHHHHHHC-----TTC---HHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHhhC-----CCC---HHHHHHHHHHHHHcCCH
Confidence 3344445566777 77777777777653 332 23555666666666653
No 354
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=20.77 E-value=26 Score=33.88 Aligned_cols=44 Identities=5% Similarity=0.021 Sum_probs=32.9
Q ss_pred HHHHhccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCCc
Q psy5736 283 GIEQMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGNK 334 (346)
Q Consensus 283 a~~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~~ 334 (346)
|...+..|++++|++.+++.++. .|.+ ..+...++.+|..+|+.
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~-----~p~~---~~~~~~lg~~~~~~g~~ 56 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIEL-----NPSN---AIYYGNRSLAYLRTECY 56 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHH-----CTTC---HHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHh-----CCcc---HHHHHHHHHHHHHhcCH
Confidence 44456778999999999999987 3333 56677888888888764
No 355
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=20.58 E-value=61 Score=23.11 Aligned_cols=36 Identities=22% Similarity=0.360 Sum_probs=20.3
Q ss_pred ccccccCCcCcCCccccccc---------CCcccccCcccccccCCc
Q psy5736 226 PIRIRCSNDNCGQIIATVKK---------LEPSAKKVEKKCESCNST 263 (346)
Q Consensus 226 ~~~~~C~~~~C~g~~~~~~~---------~~~~~~~~~~~C~~C~~~ 263 (346)
+..++|+ .|+-...+... +........|.|+.|+..
T Consensus 5 m~~y~C~--vCGyiYd~~~Gdp~~gi~pGT~f~~lPddw~CP~Cga~ 49 (70)
T 1dx8_A 5 EGKYECE--ACGYIYEPEKGDKFAGIPPGTPFVDLSDSFMCPACRSP 49 (70)
T ss_dssp SSCEEET--TTCCEECTTTCCTTTTCCSSCCGGGSCTTCBCTTTCCB
T ss_pred CceEEeC--CCCEEEcCCCCCcccCcCCCCchhhCCCCCcCCCCCCC
Confidence 3567888 88744433210 000111246999999985
No 356
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.45 E-value=2.7e+02 Score=25.03 Aligned_cols=49 Identities=6% Similarity=0.045 Sum_probs=39.7
Q ss_pred HhccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCCccc
Q psy5736 286 QMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGNKWV 336 (346)
Q Consensus 286 ~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~~~~ 336 (346)
..+.|++++|+..+.+++....+. ..++....+...+.++|..+|+.-+
T Consensus 145 ~~~~g~~~~A~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (434)
T 4b4t_Q 145 HYQKKQYKDSLALINDLLREFKKL--DDKPSLVDVHLLESKVYHKLRNLAK 193 (434)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTS--SCSTHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHccChHHHHHHHHHHHHHHHhc--ccchhHHHHHHHHHHHHHHhCcHHH
Confidence 456789999999999999888765 4566778888899999999988643
No 357
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=20.37 E-value=2.4e+02 Score=26.64 Aligned_cols=40 Identities=5% Similarity=-0.116 Sum_probs=26.4
Q ss_pred ccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCCc
Q psy5736 290 SCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGNK 334 (346)
Q Consensus 290 ~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~~ 334 (346)
+++++|++.|++.++.- |.++....+...|+.+|..+|+.
T Consensus 235 g~~~~A~~~~~~al~~~-----p~~~~~~~~~~~lg~~~~~~g~~ 274 (474)
T 4abn_A 235 KISQQALSAYAQAEKVD-----RKASSNPDLHLNRATLHKYEESY 274 (474)
T ss_dssp HHHHHHHHHHHHHHHHC-----GGGGGCHHHHHHHHHHHHHTTCH
T ss_pred chHHHHHHHHHHHHHhC-----CCcccCHHHHHHHHHHHHHcCCH
Confidence 66778888888887762 31224455667777777777764
No 358
>2ksn_A Ubiquitin domain-containing protein 2; UBTD2, DC-UBP, signaling protein; NMR {Homo sapiens}
Probab=20.14 E-value=29 Score=28.18 Aligned_cols=50 Identities=16% Similarity=0.346 Sum_probs=29.6
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCCccccCcc
Q psy5736 278 EMFYRGIEQMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGNKWVIPEN 340 (346)
Q Consensus 278 ~~~~~a~~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~~~~~~~~ 340 (346)
+.++.|.++|+.++.+.| +.+|+-- .+..|..- |..||-.+|+.|.+|+-
T Consensus 60 ~ALraA~~~~e~~Dl~tA----Q~IldaA-gItvp~gd--------L~~cYDe~G~~Y~LP~y 109 (137)
T 2ksn_A 60 DALKAAAHAFESNDHELA----QAIIDGA-NITLPHGA--------LTECYDELGNRYQLPVY 109 (137)
T ss_dssp HHHHHHHHHHHTTCHHHH----HHHHHHH-SCBCSSCC--------SSEEEETTTEEEECCGG
T ss_pred HHHHHHHHHHhcCCHHHH----HHHHHHc-CCcccCCc--------HHHHHhccCCccCCCee
Confidence 445566666777775543 2333332 23333332 34599999999999973
No 359
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=20.07 E-value=1.3e+02 Score=27.11 Aligned_cols=48 Identities=8% Similarity=-0.080 Sum_probs=34.8
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHhhcccCCCcHhHHHHHHHHHHHHHHhCCc
Q psy5736 279 MFYRGIEQMNTSCFREAVESLTKFSDQIHELVVPPYKLASLAHEALRNCWSLAGNK 334 (346)
Q Consensus 279 ~~~~a~~~~~~~~~~~ai~~l~~~l~~~~~~l~p~h~~~~~~~~~L~~~y~~~G~~ 334 (346)
.+..|.-.+..+++++|+..+.+.|+.. |.+ ..+...++.+|..+|+.
T Consensus 233 ~~nla~~~~~~g~~~~A~~~~~~al~~~-----p~~---~~a~~~lg~a~~~~g~~ 280 (338)
T 2if4_A 233 HLNIAACLIKLKRYDEAIGHCNIVLTEE-----EKN---PKALFRRGKAKAELGQM 280 (338)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHHC-----TTC---HHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCC---HHHHHHHHHHHHHcCCH
Confidence 3455666778899999999999998753 444 34667778888887764
Done!