RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5736
         (346 letters)



>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific
           methyltransferase SET7/9 catalytic domain {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 171

 Score = 31.7 bits (71), Expect = 0.068
 Identities = 15/92 (16%), Positives = 23/92 (25%), Gaps = 9/92 (9%)

Query: 125 TKHHFPNAKINYVGVGIY--PTVSLFNHDCYP-----AVTRYFNGKNIIVKALRPLKPKE 177
            +    +    Y  V  Y        NH   P            G    ++ LR ++  E
Sbjct: 77  DEETVIDVPEPYNHVSKYCASLGHKANHSFTPNCIYDMFVHPRFGPIKCIRTLRAVEADE 136

Query: 178 VVAENYGLVFSRKHLIDRQKVLSARYWFECKC 209
            +   YG  +               Y  E K 
Sbjct: 137 ELTVAYG--YDHSPPGKSGPEAPEWYQVELKA 166


>d1f6fb2 b.1.2.1 (B:101-203) Prolactin receptor {Rat (Rattus
           norvegicus) [TaxId: 10116]}
          Length = 103

 Score = 26.1 bits (56), Expect = 2.5
 Identities = 6/46 (13%), Positives = 16/46 (34%)

Query: 190 KHLIDRQKVLSARYWFECKCRACVENWPLMESLEKYPIRIRCSNDN 235
           ++ I  +   +  +               +   +KY ++ RC  D+
Sbjct: 43  EYEIRLKPEEAEEWEIHFTGHQTQFKVFDLYPGQKYLVQTRCKPDH 88


>d2e74d1 b.33.1.1 (D:46-179) ISP subunit from the cytochrome b6f
           complex, soluble domain {Mastigocladus laminosus [TaxId:
           83541]}
          Length = 134

 Score = 26.2 bits (57), Expect = 3.3
 Identities = 14/102 (13%), Positives = 21/102 (20%), Gaps = 27/102 (26%)

Query: 156 VTRYFNGKNIIVKALRPLKPKEVVAENYGLVFSRKHLIDRQKVLSARYWFECKC--RACV 213
             +   G N+ V                GL     +++   K     Y     C    CV
Sbjct: 10  TAKDKLGNNVKVSKFLESHNAGDRVLVQGLKGDPTYIVVESKEAIRDYGINAVCTHLGCV 69

Query: 214 ENW-------------------------PLMESLEKYPIRIR 230
             W                         P   SL      ++
Sbjct: 70  VPWNAAENKFKCPCHGSQYDETGKVIRGPAPLSLALCHATVQ 111


>d2peoa1 a.280.1.1 (A:1-115) RuBisCo chaperone RbcX {Anabaena sp.
           [TaxId: 1167]}
          Length = 115

 Score = 25.5 bits (56), Expect = 5.7
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 276 LNEMFYRGIEQMNTSCFREAVESLTKFSD 304
           L EM   GI+Q N    R+ +E +T+ S 
Sbjct: 85  LPEMVVTGIQQANMEKRRQHLERMTQVSL 113


>d1wfha_ g.80.1.1 (A:) Zinc finger A20 and AN1 domains containing
           protein At2g36320 {Thale cress (Arabidopsis thaliana)
           [TaxId: 3702]}
          Length = 64

 Score = 24.4 bits (53), Expect = 6.0
 Identities = 6/26 (23%), Positives = 10/26 (38%)

Query: 247 EPSAKKVEKKCESCNSTSDLTEIKTK 272
           +PS  +   +C  C     LT    +
Sbjct: 8   QPSPPQRPNRCTVCRKRVGLTGFMCR 33


>d2qtva5 g.41.10.1 (A:45-119) Sec23 {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 75

 Score = 24.4 bits (53), Expect = 7.7
 Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 2/50 (4%)

Query: 229 IRCSNDNCGQIIATVKKLEPSAKKVEKKCESCNSTSDLTEIKTKLSELNE 278
           + CS  +C  I+     ++P        C  CNS + L    T LS+ N 
Sbjct: 10  VVCSGPHCKSILNPYCVIDPRNSSW--SCPICNSRNHLPPQYTNLSQENM 57


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.133    0.407 

Gapped
Lambda     K      H
   0.267   0.0629    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,287,076
Number of extensions: 58145
Number of successful extensions: 158
Number of sequences better than 10.0: 1
Number of HSP's gapped: 158
Number of HSP's successfully gapped: 10
Length of query: 346
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 260
Effective length of database: 1,226,816
Effective search space: 318972160
Effective search space used: 318972160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.4 bits)