BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy574
(977 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|B Chain B, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|C Chain C, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|D Chain D, Drosophila Robo Ig1-2 (Monoclinic Form)
Length = 208
Score = 117 bits (293), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 57/105 (54%), Positives = 76/105 (72%), Gaps = 6/105 (5%)
Query: 1 ISLLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPID------FENSKR 54
I++LR++FRV+PK RVA G+TALLECGPP+G PEPTL+W K+G P+D F S R
Sbjct: 104 IAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSR 163
Query: 55 LRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVK 99
+R+VDG NL I + D+G Y+C+ +N+ GTRES+ A L V VK
Sbjct: 164 VRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQVK 208
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 89/194 (45%), Gaps = 18/194 (9%)
Query: 11 QPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPI--DFENSKRLRLVDGTNL---AI 65
P V + A L C G PEPT+ W K+G P+ + + S R++ DG +
Sbjct: 15 HPTDLVVKKNEPATLNCKV-EGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTM 73
Query: 66 QDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIR-GPKDTTVSASSIIVFECS-V 123
Q ++ D G Y CV KN G S A L++ V R PKDT V+ + EC
Sbjct: 74 QGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPP 133
Query: 124 GGDAVLTVHWKRLGSAMPE---------DRMSVLPSRSLQLSDVRLEDAGEYVCEAENAV 174
G T+ W + G + + R+ ++ +L +S+V D G Y C A+N V
Sbjct: 134 KGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLV 193
Query: 175 G-KISASATLTVQM 187
G + S+ A L VQ+
Sbjct: 194 GTRESSYAKLIVQV 207
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 60/141 (42%), Gaps = 17/141 (12%)
Query: 100 PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVR 159
P II P D V + C V G T+ W + G + + S +Q D
Sbjct: 10 PRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKK---SHRVQFKDGA 66
Query: 160 L-----------EDAGEYVCEAENAVGK-ISASATLTVQ-MAPIVRERPSDLRLEVGRDA 206
L +D GEY C A+N VG+ +S A+L + + R P D R+ G A
Sbjct: 67 LFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETA 126
Query: 207 VFLCG-IEGSPPPSTFWMLEG 226
+ CG +G P P+ W+ +G
Sbjct: 127 LLECGPPKGIPEPTLIWIKDG 147
Score = 33.9 bits (76), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 37/195 (18%), Positives = 75/195 (38%), Gaps = 19/195 (9%)
Query: 187 MAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITS 246
+P + E P+DL ++ A C +EG P P+ W +G + + + +
Sbjct: 8 QSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEP---VSTNEKKSHRVQFKD 64
Query: 247 DGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLAR-ASLTVSGPDPNPPPVILFGPANQTL 305
+ + + C+ N G ++R ASL ++ + P + +
Sbjct: 65 GALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDD----FRVEPKDTRV 120
Query: 306 PLRSEARLRC---QVRGEGSVQWWRG--------EREVGSGPRVNVTGDGSLVLTDVTKE 354
A L C + E ++ W + G+ RV + G+L++++V
Sbjct: 121 AKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPI 180
Query: 355 DSGEYTCVVKSPHGS 369
D G Y C+ ++ G+
Sbjct: 181 DEGNYKCIAQNLVGT 195
Score = 32.7 bits (73), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 12/96 (12%)
Query: 294 PVILFGPANQTLPLRSEARLRCQVRG--EGSVQWWRGEREVGSGP----RVNVTGDGSLV 347
P I+ P + + A L C+V G E +++W++ V + RV DG+L
Sbjct: 10 PRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFK-DGALF 68
Query: 348 LTDVTK----EDSGEYTCVVKSPHGSA-SWSASLRF 378
+ +D GEY CV K+ G A S ASL+
Sbjct: 69 FYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQI 104
>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|B Chain B, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|C Chain C, Drosophila Robo Ig1-2 (Tetragonal Form)
Length = 217
Score = 117 bits (293), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 57/105 (54%), Positives = 76/105 (72%), Gaps = 6/105 (5%)
Query: 1 ISLLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPID------FENSKR 54
I++LR++FRV+PK RVA G+TALLECGPP+G PEPTL+W K+G P+D F S R
Sbjct: 104 IAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSR 163
Query: 55 LRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVK 99
+R+VDG NL I + D+G Y+C+ +N+ GTRES+ A L V VK
Sbjct: 164 VRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQVK 208
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 89/194 (45%), Gaps = 18/194 (9%)
Query: 11 QPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPI--DFENSKRLRLVDGTNL---AI 65
P V + A L C G PEPT+ W K+G P+ + + S R++ DG +
Sbjct: 15 HPTDLVVKKNEPATLNCKV-EGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTM 73
Query: 66 QDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIR-GPKDTTVSASSIIVFECS-V 123
Q ++ D G Y CV KN G S A L++ V R PKDT V+ + EC
Sbjct: 74 QGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPP 133
Query: 124 GGDAVLTVHWKRLGSAMPE---------DRMSVLPSRSLQLSDVRLEDAGEYVCEAENAV 174
G T+ W + G + + R+ ++ +L +S+V D G Y C A+N V
Sbjct: 134 KGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLV 193
Query: 175 G-KISASATLTVQM 187
G + S+ A L VQ+
Sbjct: 194 GTRESSYAKLIVQV 207
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 60/141 (42%), Gaps = 17/141 (12%)
Query: 100 PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVR 159
P II P D V + C V G T+ W + G + + S +Q D
Sbjct: 10 PRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKK---SHRVQFKDGA 66
Query: 160 L-----------EDAGEYVCEAENAVGK-ISASATLTVQ-MAPIVRERPSDLRLEVGRDA 206
L +D GEY C A+N VG+ +S A+L + + R P D R+ G A
Sbjct: 67 LFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETA 126
Query: 207 VFLCG-IEGSPPPSTFWMLEG 226
+ CG +G P P+ W+ +G
Sbjct: 127 LLECGPPKGIPEPTLIWIKDG 147
Score = 33.9 bits (76), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 37/195 (18%), Positives = 75/195 (38%), Gaps = 19/195 (9%)
Query: 187 MAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITS 246
+P + E P+DL ++ A C +EG P P+ W +G + + + +
Sbjct: 8 QSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEP---VSTNEKKSHRVQFKD 64
Query: 247 DGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLAR-ASLTVSGPDPNPPPVILFGPANQTL 305
+ + + C+ N G ++R ASL ++ + P + +
Sbjct: 65 GALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDD----FRVEPKDTRV 120
Query: 306 PLRSEARLRC---QVRGEGSVQWWRG--------EREVGSGPRVNVTGDGSLVLTDVTKE 354
A L C + E ++ W + G+ RV + G+L++++V
Sbjct: 121 AKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPI 180
Query: 355 DSGEYTCVVKSPHGS 369
D G Y C+ ++ G+
Sbjct: 181 DEGNYKCIAQNLVGT 195
Score = 32.7 bits (73), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 12/96 (12%)
Query: 294 PVILFGPANQTLPLRSEARLRCQVRG--EGSVQWWRGEREVGSGP----RVNVTGDGSLV 347
P I+ P + + A L C+V G E +++W++ V + RV DG+L
Sbjct: 10 PRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFK-DGALF 68
Query: 348 LTDVTK----EDSGEYTCVVKSPHGSA-SWSASLRF 378
+ +D GEY CV K+ G A S ASL+
Sbjct: 69 FYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQI 104
>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor
Length = 403
Score = 103 bits (258), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 107/396 (27%), Positives = 164/396 (41%), Gaps = 37/396 (9%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQ 66
F +P G LL C P + WKK+G + R + + +L IQ
Sbjct: 23 HFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLPNGSLLIQ 82
Query: 67 D-----SRKTDDGRYQCVVK-NVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFE 120
+ K D+G YQC +G+ S A + V + + T ++ +
Sbjct: 83 NILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTESITAFMGDTVLLK 142
Query: 121 CSVGGDAVLTVHWKR----LGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAEN-AVG 175
C V GD + T+HW++ L + R+ VLPS +LQ+S ++ D+G Y C A N A
Sbjct: 143 CEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQPGDSGVYRCSARNPAST 202
Query: 176 KISASATLTVQMAP------IVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRS 229
+ A + + P +RPS++ G+DAV C + G PPPS W+
Sbjct: 203 RTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLR----- 257
Query: 230 LIYPGDRVDNIQAEITS--DGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSG 287
G+ V ++++ S G NLL I NV+ + C+ + A A LTV
Sbjct: 258 ----GEEVIQLRSKKYSLLGGSNLL-ISNVTDDDSGTYT-CVVTYKNENISASAELTVL- 310
Query: 288 PDPNPPPVILFGPANQTLPLRSEARLRCQVRGEG--SVQWWRGEREVGSGPRVNVTGDGS 345
PP L P+N + C V G+ +V W + V + G +
Sbjct: 311 ----VPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGSN 366
Query: 346 LVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESP 381
L + V K D G Y CV ++ G+A SA L P
Sbjct: 367 LRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVPKP 402
>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin
Length = 570
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 98/381 (25%), Positives = 176/381 (46%), Gaps = 26/381 (6%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGT-NLAIQ 66
F ++P S +A G++ +C P + W K+ I + ++ LV+ T L +
Sbjct: 200 FDLKPVSVDLALGESGTFKCHVTGTAP-IKITWAKDNREIRPGGNYKMTLVENTATLTVL 258
Query: 67 DSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDT-TVSASSIIVFECSVGG 125
K D G+Y C NVAG ++S A L V P I+ + + V +EC +GG
Sbjct: 259 KVTKGDAGQYTCYASNVAG-KDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGG 317
Query: 126 DAVLTVHWKRLGSAMPED---RMSVLPSRS-LQLSDVRLEDAGEYVCEAENAVGKISASA 181
+ V W + + + E RMS + S + L++ ++ +ED+G+Y CEA NA G S+S
Sbjct: 318 SPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSST 377
Query: 182 TLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQ 241
+L V+ P+ R++P + G D C ++G+PP W + R L R
Sbjct: 378 SLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWH-KDKREL-----RSGKKY 431
Query: 242 AEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPA 301
++ + + + I NV +A C N GSD S+T+ PP + +
Sbjct: 432 KIMSENFLTSIHILNVD-SADIGEYQCKASNDVGSDTCVGSITLKA-----PPRFVKKLS 485
Query: 302 NQTLPLRSEARLRCQVRGEG--SVQWWRGERE-VGSGPRVNVTGDGSLVLTDVTKED--- 355
+ + + E +L+ + G SV W++ + E V + ++ ++ ++ +
Sbjct: 486 DISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPAN 545
Query: 356 SGEYTCVVKSPHGSASWSASL 376
+G+YTC +K+ G+ A+L
Sbjct: 546 AGKYTCQIKNEAGTQECFATL 566
Score = 98.6 bits (244), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 106/393 (26%), Positives = 168/393 (42%), Gaps = 33/393 (8%)
Query: 18 AAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGT-NLAIQDSRKTDDGRY 76
A G+ L+C G PE + W K + + +++ + +L I +D G Y
Sbjct: 18 AIGEPITLQCKV-DGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLVINKVDHSDVGEY 76
Query: 77 QCVVKNVAGTRESTDAVLRVLVK---PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHW 133
C +N G S+ AVL + + P R KD + + FEC + G L V W
Sbjct: 77 TCKAENSVGAVASS-AVLVIKERKLPPSFARKLKDVHETLGFPVAFECRINGSEPLQVSW 135
Query: 134 KRLGSAMPED---RMSVLPS-RSLQLSDVRLEDAGEYVCEAENAVGKISASATLTV---Q 186
+ G + +D + S + + +LQ+ G+Y C A N +G S+SA LT+ +
Sbjct: 136 YKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHE 195
Query: 187 MAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITS 246
+ P +P + L +G F C + G+ P W + NR I PG E T+
Sbjct: 196 VPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWA-KDNRE-IRPGGNYKMTLVENTA 253
Query: 247 DGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLP 306
L + V++ A C N AG D A L V PP I ++ +
Sbjct: 254 ----TLTVLKVTKGDAGQYT-CYASNVAGKDSCSAQLGVQ----EPPRFIKKLEPSRIVK 304
Query: 307 LRSEARLRCQVRG--EGSVQWWRGEREVGSGPRVNVTGDGS---LVLTDVTKEDSGEYTC 361
R C++ G E V W++ E E+ + ++ S L + +++ EDSG+YTC
Sbjct: 305 QDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTC 364
Query: 362 VVKSPHGSASWSASLRFESPTNPNIGFFRAPEP 394
+ GSAS S SL+ + P F + P P
Sbjct: 365 EAHNAAGSASSSTSLKVKEPP----VFRKKPHP 393
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 87/321 (27%), Positives = 130/321 (40%), Gaps = 51/321 (15%)
Query: 100 PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAM---PEDRMSVLPS-RSLQL 155
PY I + + I +C V G + + W + + + P +M + SL +
Sbjct: 6 PYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLVI 65
Query: 156 SDVRLEDAGEYVCEAENAVGKISASATLTV---QMAPIVRERPSDLRLEVGRDAVFLCGI 212
+ V D GEY C+AEN+VG +++SA L + ++ P + D+ +G F C I
Sbjct: 66 NKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAFECRI 125
Query: 213 EGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLK--IQNVSRTAAPLIIL--- 267
GS P W +G E+ D NL I NV A L IL
Sbjct: 126 NGSEPLQVSWYKDG----------------ELLKDDANLQTSFIHNV----ATLQILQTD 165
Query: 268 --------CLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG 319
C N G+ + A LT+S + PP P + L L +C V G
Sbjct: 166 QSHVGQYNCSASNPLGTASSSAKLTLS--EHEVPPFFDLKPVSVDLALGESGTFKCHVTG 223
Query: 320 EGSVQ--WWRGEREVGSGPRVNVT---GDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSA 374
++ W + RE+ G +T +L + VTK D+G+YTC + G S SA
Sbjct: 224 TAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSA 283
Query: 375 SLRFESPTNPNIGFFRAPEPS 395
L + P F + EPS
Sbjct: 284 QLGVQEPPR----FIKKLEPS 300
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 78/186 (41%), Gaps = 12/186 (6%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG---TNLA 64
FR +P G LEC +G P + W K+ + + K+ +++ T++
Sbjct: 387 FRKKPHPVETLKGADVHLEC-ELQGTPPFQVSWHKDKR--ELRSGKKYKIMSENFLTSIH 443
Query: 65 IQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVG 124
I + D G YQC N G+ ++ + + P ++ D + + + ++
Sbjct: 444 ILNVDSADIGEYQCKASNDVGS-DTCVGSITLKAPPRFVKKLSDISTVVGEEVQLQATIE 502
Query: 125 GDAVLTVHWKRLGSAMPEDRMSVLPSRS-----LQLSDVRLEDAGEYVCEAENAVGKISA 179
G ++V W + + + ++ S S LQ S +AG+Y C+ +N G
Sbjct: 503 GAEPISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQEC 562
Query: 180 SATLTV 185
ATL+V
Sbjct: 563 FATLSV 568
>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1
pdb|2V9R|A Chain A, First And Second Ig Domains From Human Robo1 (Form 2)
Length = 212
Score = 97.1 bits (240), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 47/105 (44%), Positives = 69/105 (65%), Gaps = 2/105 (1%)
Query: 1 ISLLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG 60
+++LR++FR P VA G+ A++EC PPRGHPEPT+ WKK+G P+D + +R+ + G
Sbjct: 107 VAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLD-DKDERI-TIRG 164
Query: 61 TNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRG 105
L I +RK+D G+Y CV N+ G RES A L VL +P ++
Sbjct: 165 GKLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLERPSFVKA 209
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/204 (33%), Positives = 96/204 (47%), Gaps = 17/204 (8%)
Query: 2 SLLREEF--RV--QPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFEN----SK 53
SL +E+F R+ P V+ G+ A L C G P PT+ W K G ++ + S
Sbjct: 2 SLRQEDFPPRIVEHPSDLIVSKGEPATLNCKA-EGRPTPTIEWYKGGERVETDKDDPRSH 60
Query: 54 RLRLVDGT--NLAIQDSRKT--DDGRYQCVVKNVAGTRESTDAVLRV-LVKPYIIRGPKD 108
R+ L G+ L I RK+ D+G Y CV +N G S DA L V +++ + P D
Sbjct: 61 RMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSD 120
Query: 109 TTVSASSIIVFECSV-GGDAVLTVHWKRLGSAMPE-DRMSVLPSRSLQLSDVRLEDAGEY 166
V+ V EC G T+ WK+ GS + + D + L ++ R DAG+Y
Sbjct: 121 VMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGGKLMITYTRKSDAGKY 180
Query: 167 VCEAENAVG-KISASATLTVQMAP 189
VC N VG + S A LTV P
Sbjct: 181 VCVGTNMVGERESEVAELTVLERP 204
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 81/181 (44%), Gaps = 14/181 (7%)
Query: 189 PIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDG 248
P + E PSDL + G A C EG P P+ W G R + D + + + S
Sbjct: 10 PRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGER-VETDKDDPRSHRMLLPSGS 68
Query: 249 MNLLKIQNVSRTAAPL--IILCLGVNAAGSDLAR-ASLTVSGPDPNPPPVILFGPANQTL 305
+ L+I + R + P + +C+ N G ++ ASL V+ + P++ +
Sbjct: 69 LFFLRIVH-GRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDD----FRQNPSDVMV 123
Query: 306 PLRSEARLRCQ-VRG--EGSVQWWR-GEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTC 361
+ A + CQ RG E ++ W + G R+ + G G L++T K D+G+Y C
Sbjct: 124 AVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRG-GKLMITYTRKSDAGKYVC 182
Query: 362 V 362
V
Sbjct: 183 V 183
>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated
Variant
Length = 284
Score = 90.1 bits (222), Expect = 5e-18, Method: Composition-based stats.
Identities = 66/221 (29%), Positives = 110/221 (49%), Gaps = 8/221 (3%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGT-NLAIQ 66
F ++P S +A G++ +C G + W K+ I + ++ LV+ T L +
Sbjct: 8 FDLKPVSVDLALGESGTFKCHVT-GTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVL 66
Query: 67 DSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDT-TVSASSIIVFECSVGG 125
K D G+Y C NVAG ++S A L V P I+ + + V +EC +GG
Sbjct: 67 KVTKGDAGQYTCYASNVAG-KDSCSAQLGVQAPPRFIKKLEPSRIVKQDEHTRYECKIGG 125
Query: 126 DAVLTVHWKRLGSAMPED---RMSVLPSRS-LQLSDVRLEDAGEYVCEAENAVGKISASA 181
+ V W + + + E RMS + S + L++ ++ +ED+G+Y CEA NA G S+S
Sbjct: 126 SPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSST 185
Query: 182 TLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFW 222
+L V+ P+ R++P + G D C ++G+PP W
Sbjct: 186 SLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSW 226
Score = 58.9 bits (141), Expect = 1e-08, Method: Composition-based stats.
Identities = 72/295 (24%), Positives = 121/295 (41%), Gaps = 24/295 (8%)
Query: 97 LVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED---RMSVLP-SRS 152
+ P+ P ++ F+C V G A + + W + + +M+++ + +
Sbjct: 3 MAPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTAT 62
Query: 153 LQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAP--IVRERPSDLRLEVGRDAVFLC 210
L + V DAG+Y C A N GK S SA L VQ P I + PS + ++ + C
Sbjct: 63 LTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQAPPRFIKKLEPSRI-VKQDEHTRYEC 121
Query: 211 GIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLG 270
I GSP W + R+ +++ + NL + T C
Sbjct: 122 KIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYT-------CEA 174
Query: 271 VNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRGEGSVQ--WWRG 328
NAAGS + SL V PPV P ++ L C+++G Q W +
Sbjct: 175 HNAAGSASSSTSLKV-----KEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKD 229
Query: 329 EREVGSGPRVNVTGDG---SLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFES 380
+RE+ SG + + + S+ + +V D GEY C + GS + S+ ++
Sbjct: 230 KRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLKA 284
Score = 50.8 bits (120), Expect = 3e-06, Method: Composition-based stats.
Identities = 58/211 (27%), Positives = 86/211 (40%), Gaps = 20/211 (9%)
Query: 189 PIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDG 248
P +P + L +G F C + G+ P W + NR I PG E T+
Sbjct: 6 PFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWA-KDNRE-IRPGGNYKMTLVENTAT- 62
Query: 249 MNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLR 308
L + V++ A C N AG D A L V P P I ++ +
Sbjct: 63 ---LTVLKVTKGDAGQYT-CYASNVAGKDSCSAQLGVQAP----PRFIKKLEPSRIVKQD 114
Query: 309 SEARLRCQVRG--EGSVQWWRGEREVGSGPRVN---VTGDGSLVLTDVTKEDSGEYTCVV 363
R C++ G E V W++ E E+ + V L + +++ EDSG+YTC
Sbjct: 115 EHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEA 174
Query: 364 KSPHGSASWSASLRFESPTNPNIGFFRAPEP 394
+ GSAS S SL+ + P F + P P
Sbjct: 175 HNAAGSASSSTSLKVKEPPV----FRKKPHP 201
Score = 47.0 bits (110), Expect = 5e-05, Method: Composition-based stats.
Identities = 43/165 (26%), Positives = 68/165 (41%), Gaps = 16/165 (9%)
Query: 32 GHPEPTLVWKKNGHPIDFENSKRLRLVDGT------NLAIQDSRKTDDGRYQCVVKNVAG 85
G PE ++W K+ I + R+ V+ NL+++DS G Y C N A
Sbjct: 125 GSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDS-----GDYTCEAHNAA- 178
Query: 86 TRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHW----KRLGSAMP 141
S+ L+V P + P + + EC + G V W + L S
Sbjct: 179 GSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKK 238
Query: 142 EDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQ 186
MS S+ + +V D GEY C+A N VG + ++T++
Sbjct: 239 YKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLK 283
>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin
Length = 284
Score = 89.4 bits (220), Expect = 9e-18, Method: Composition-based stats.
Identities = 66/221 (29%), Positives = 110/221 (49%), Gaps = 8/221 (3%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGT-NLAIQ 66
F ++P S +A G++ +C G + W K+ I + ++ LV+ T L +
Sbjct: 8 FDLKPVSVDLALGESGTFKCHVT-GTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVL 66
Query: 67 DSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDT-TVSASSIIVFECSVGG 125
K D G+Y C NVAG ++S A L V P I+ + + V +EC +GG
Sbjct: 67 KVTKGDAGQYTCYASNVAG-KDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGG 125
Query: 126 DAVLTVHWKRLGSAMPED---RMSVLPSRS-LQLSDVRLEDAGEYVCEAENAVGKISASA 181
+ V W + + + E RMS + S + L++ ++ +ED+G+Y CEA NA G S+S
Sbjct: 126 SPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSST 185
Query: 182 TLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFW 222
+L V+ P+ R++P + G D C ++G+PP W
Sbjct: 186 SLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSW 226
Score = 58.9 bits (141), Expect = 1e-08, Method: Composition-based stats.
Identities = 72/295 (24%), Positives = 121/295 (41%), Gaps = 24/295 (8%)
Query: 97 LVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED---RMSVLP-SRS 152
+ P+ P ++ F+C V G A + + W + + +M+++ + +
Sbjct: 3 MAPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTAT 62
Query: 153 LQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAP--IVRERPSDLRLEVGRDAVFLC 210
L + V DAG+Y C A N GK S SA L VQ P I + PS + ++ + C
Sbjct: 63 LTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRI-VKQDEHTRYEC 121
Query: 211 GIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLG 270
I GSP W + R+ +++ + NL + T C
Sbjct: 122 KIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYT-------CEA 174
Query: 271 VNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRGEGSVQ--WWRG 328
NAAGS + SL V PPV P ++ L C+++G Q W +
Sbjct: 175 HNAAGSASSSTSLKV-----KEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKD 229
Query: 329 EREVGSGPRVNVTGDG---SLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFES 380
+RE+ SG + + + S+ + +V D GEY C + GS + S+ ++
Sbjct: 230 KRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLKA 284
Score = 50.8 bits (120), Expect = 4e-06, Method: Composition-based stats.
Identities = 58/211 (27%), Positives = 86/211 (40%), Gaps = 20/211 (9%)
Query: 189 PIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDG 248
P +P + L +G F C + G+ P W + NR I PG E T+
Sbjct: 6 PFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWA-KDNRE-IRPGGNYKMTLVENTAT- 62
Query: 249 MNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLR 308
L + V++ A C N AG D A L V PP I ++ +
Sbjct: 63 ---LTVLKVTKGDAGQYT-CYASNVAGKDSCSAQLGVQ----EPPRFIKKLEPSRIVKQD 114
Query: 309 SEARLRCQVRG--EGSVQWWRGEREVGSGPRVN---VTGDGSLVLTDVTKEDSGEYTCVV 363
R C++ G E V W++ E E+ + V L + +++ EDSG+YTC
Sbjct: 115 EHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEA 174
Query: 364 KSPHGSASWSASLRFESPTNPNIGFFRAPEP 394
+ GSAS S SL+ + P F + P P
Sbjct: 175 HNAAGSASSSTSLKVKEPPV----FRKKPHP 201
Score = 47.4 bits (111), Expect = 4e-05, Method: Composition-based stats.
Identities = 43/165 (26%), Positives = 68/165 (41%), Gaps = 16/165 (9%)
Query: 32 GHPEPTLVWKKNGHPIDFENSKRLRLVDGT------NLAIQDSRKTDDGRYQCVVKNVAG 85
G PE ++W K+ I + R+ V+ NL+++DS G Y C N A
Sbjct: 125 GSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDS-----GDYTCEAHNAA- 178
Query: 86 TRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHW----KRLGSAMP 141
S+ L+V P + P + + EC + G V W + L S
Sbjct: 179 GSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKK 238
Query: 142 EDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQ 186
MS S+ + +V D GEY C+A N VG + ++T++
Sbjct: 239 YKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLK 283
>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|B Chain B, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|C Chain C, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
Length = 816
Score = 89.0 bits (219), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 79/286 (27%), Positives = 119/286 (41%), Gaps = 33/286 (11%)
Query: 11 QPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRK 70
Q + + + AG+T ++ C P G+P ++VW+++ + N K+ +GT + R
Sbjct: 532 QMEKKAIVAGETLIVTC-PVAGYPIDSIVWERDNRALPI-NRKQKVFPNGTLIIENVERN 589
Query: 71 TDDGRYQCVVKNVAGTRESTDAVLRVLVKPYII-----RGPKDTTVSASSIIVFECSV-G 124
+D Y CV KN G ++V+V P II GP + CSV G
Sbjct: 590 SDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGP----AQVGQYLTLHCSVPG 645
Query: 125 GDAVLTVHWKRLGSAMPEDRMSVLPSRS------LQLSDVRLEDAGEYVCEAENAVGKIS 178
GD L + W G A+ ED + + SR L + V AG + C A N G
Sbjct: 646 GDLPLNIDWTLDGQAISED-LGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQ 704
Query: 179 ASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGD--- 235
+ L V + P P+D G DA C +G P P W + PG+
Sbjct: 705 FTTPLNVYVPPRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDT---PGEYKD 761
Query: 236 --RVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLA 279
+ DNI+ E L + N+ +T LC +N GS L+
Sbjct: 762 LKKSDNIRVE-----EGTLHVDNIQKTNEGY-YLCEAINGIGSGLS 801
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 103/408 (25%), Positives = 159/408 (38%), Gaps = 53/408 (12%)
Query: 2 SLLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLV--W----KKNGHPIDFENSKRL 55
+++ + + + V G++A+++C P + V W ++N P + K L
Sbjct: 135 AVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYL 194
Query: 56 RLVDGTNLAIQDSRKTDDGR-YQCVVKN--VAGTRESTDAVLRVLVKPYIIRGPKDT--- 109
L G L I++ D + YQC K+ TR S V+ +P PK
Sbjct: 195 VLPSG-ELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLA 253
Query: 110 -----TVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLS------DV 158
T S SS + C G V W + + VL R Q+S D
Sbjct: 254 KFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDA 313
Query: 159 RLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPP 218
+ED+G+Y+C N+VG S LTV + P ++ GR AVF C G+P
Sbjct: 314 VVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIK 373
Query: 219 STFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDL 278
+ WM +G + ++L+I++V + + C N S
Sbjct: 374 TVSWMKDG----------------KAIGHSESVLRIESVKKEDKGM-YQCFVRNDRESAE 416
Query: 279 ARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRGEGS--VQWWRGEREVGSGP 336
A A L + G PPVI +T+ L+C G + + W +++ +
Sbjct: 417 ASAELKLGG--RFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANND 474
Query: 337 R------VNVTGD--GSLVLTDVTKEDSGEYTCVVKSPHGSASWSASL 376
R V V GD L +T V D G Y C+ KS G A SA L
Sbjct: 475 RYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKL 522
Score = 77.4 bits (189), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 122/292 (41%), Gaps = 38/292 (13%)
Query: 9 RVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDS 68
++ P +Q V G A+ C G+P T+ W K+G I S L I+
Sbjct: 347 KIDPPTQTVDFGRPAVFTC-QYTGNPIKTVSWMKDGKAIGHSESV---------LRIESV 396
Query: 69 RKTDDGRYQCVVKNVAGTRESTDAVLRVLV-----KPYIIRGPKDTTVSASSIIVFECSV 123
+K D G YQC V+N RES +A + + P I + ++ T+ + +C
Sbjct: 397 KKEDKGMYQCFVRN---DRESAEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVA 453
Query: 124 GGDAVLTVHWKRLGSAMPE-DRMSVLPSRS--------LQLSDVRLEDAGEYVCEAENAV 174
GG+ + W+ G + DR V + L ++ V D G Y C A++ V
Sbjct: 454 GGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKV 513
Query: 175 GKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPG 234
G SA L V P +R+ + G + C + G P S W + NR+L P
Sbjct: 514 GVAEHSAKLNVYGLPYIRQMEKKA-IVAGETLIVTCPVAGYPIDSIVWERD-NRAL--PI 569
Query: 235 DRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVS 286
+R + ++ +G L I+NV R + C+ N G AR SL V
Sbjct: 570 NR----KQKVFPNGT--LIIENVERNSDQATYTCVAKNQEGYS-ARGSLEVQ 614
Score = 69.7 bits (169), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 100/413 (24%), Positives = 157/413 (38%), Gaps = 59/413 (14%)
Query: 23 ALLECGPPRGHPEPTLVW-KKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGR------ 75
A +EC G+P P ++W + +G + + LR + + + +D R
Sbjct: 57 AEIEC-KASGNPMPEIIWIRSDGTAVG--DVPGLRQISSDGKLVFPPFRAEDYRQEVHAQ 113
Query: 76 -YQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFEC---SVGGDAVLTV 131
Y C+ +N G+ S D +R +V Y V + V +C S D V V
Sbjct: 114 VYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVV 173
Query: 132 HW------KRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGE-YVCEAENAVG---KISASA 181
W A + + VLPS L + +V ED + Y C ++ + ++SA+
Sbjct: 174 SWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATK 233
Query: 182 TLTVQMAPIVRERPS-------DLRLEVGRDAV-FLCGIEGSPPPSTFW--MLEGN--RS 229
V PI P D++ G + LC +G P P W +EG +
Sbjct: 234 GRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQ 293
Query: 230 LIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPD 289
+ DRV + G ++K V + LC+ N+ G + LTV+ P
Sbjct: 294 AVVLNDRVKQVS------GTLIIKDAVVEDSGK---YLCVVNNSVGGESVETVLTVTAPL 344
Query: 290 PNPPPVILFGPANQTLPLRSEARLRCQVRGE--GSVQWWRGEREVGSGPRVNVTGDGSLV 347
P QT+ A CQ G +V W + + +G V L
Sbjct: 345 SAK-----IDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESV-------LR 392
Query: 348 LTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGP 400
+ V KED G Y C V++ SA SA L+ +P + E + PGP
Sbjct: 393 IESVKKEDKGMYQCFVRNDRESAEASAELKLGGRFDPPVIRQAFQEETMEPGP 445
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 7/82 (8%)
Query: 10 VQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKN-----GHPIDFENSKRLRLVDGTNLA 64
++P + A G A +EC G P+P + WKK G D + S +R+ +GT L
Sbjct: 719 LEPTDKAFAQGSDAKVEC-KADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGT-LH 776
Query: 65 IQDSRKTDDGRYQCVVKNVAGT 86
+ + +KT++G Y C N G+
Sbjct: 777 VDNIQKTNEGYYLCEAINGIGS 798
>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex
Length = 384
Score = 86.3 bits (212), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 75/292 (25%), Positives = 120/292 (41%), Gaps = 24/292 (8%)
Query: 6 EEFRVQPKSQ-RVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLA 64
E F+ + +S V G +L CGPP E + W N +P +++++R + NL
Sbjct: 102 ENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYP-SYQDNRRFVSQETGNLY 160
Query: 65 IQDSRKTDDGRYQCVVKNVAGTRE----------STDAVLRVLVKPYIIRGPKDTTVSAS 114
I K+D G Y CVV N + D V+ ++ P+
Sbjct: 161 IAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKG 220
Query: 115 SIIVFECSVGGDAVLTVHWKRL-GSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENA 173
+ + EC G+ V T+ W+R G + + L++ + + EDAG Y C AEN+
Sbjct: 221 TTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAENS 280
Query: 174 VGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYP 233
GK A LT P + +D+ + + + C G P P+ W+ G+ L
Sbjct: 281 RGKNVAKGQLTFYAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTR- 339
Query: 234 GDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTV 285
D IQ E G + I N+S + C+ N G + A L+V
Sbjct: 340 ----DRIQIE---QGTLNITIVNLSDAG---MYQCVAENKHGVIFSSAELSV 381
Score = 73.2 bits (178), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 83/363 (22%), Positives = 143/363 (39%), Gaps = 33/363 (9%)
Query: 31 RGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTREST 90
+G+P+P + WK NG +D R +VDG+ L ++ D G YQC+ N GT S
Sbjct: 33 KGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSLLINNPNKTQDAGTYQCIATNSFGTIVSR 92
Query: 91 DAVLRV-LVKPYIIRGPKDTTVSASSIIVFECS---VGGDAVLTVHWKRLGSAMPEDRMS 146
+A L+ ++ + R +V +V C G+ + S R
Sbjct: 93 EAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFV 152
Query: 147 VLPSRSLQLSDVRLEDAGEYVCEAENAVGK----------ISASATLTVQMAPIVR-ERP 195
+ +L ++ V D G Y C N V I + + + P + + P
Sbjct: 153 SQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFP 212
Query: 196 SDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQ 255
+ E G C G+P P+ W + + R S+G +L+I
Sbjct: 213 ETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHK-------SNG--ILEIP 263
Query: 256 NVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRC 315
N + A C+ N+ G ++A+ LT PN +I + + + C
Sbjct: 264 NFQQEDAGS-YECVAENSRGKNVAKGQLTFYA-QPNWVQII----NDIHVAMEESVFWEC 317
Query: 316 QVRG--EGSVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWS 373
+ G + + +W + + + R+ + G+L +T V D+G Y CV ++ HG S
Sbjct: 318 KANGRPKPTYRWLKNGDPLLTRDRIQIE-QGTLNITIVNLSDAGMYQCVAENKHGVIFSS 376
Query: 374 ASL 376
A L
Sbjct: 377 AEL 379
>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4
pdb|3JXA|B Chain B, Immunoglobulin Domains 1-4 Of Mouse Cntn4
Length = 383
Score = 85.9 bits (211), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 75/292 (25%), Positives = 120/292 (41%), Gaps = 24/292 (8%)
Query: 6 EEFRVQPKSQ-RVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLA 64
E F+ + +S V G +L CGPP E + W N +P +++++R + NL
Sbjct: 101 ENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYP-SYQDNRRFVSQETGNLY 159
Query: 65 IQDSRKTDDGRYQCVVKNVAGTRE----------STDAVLRVLVKPYIIRGPKDTTVSAS 114
I K+D G Y CVV N + D V+ ++ P+
Sbjct: 160 IAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKG 219
Query: 115 SIIVFECSVGGDAVLTVHWKRL-GSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENA 173
+ + EC G+ V T+ W+R G + + L++ + + EDAG Y C AEN+
Sbjct: 220 TTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAENS 279
Query: 174 VGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYP 233
GK A LT P + +D+ + + + C G P P+ W+ G+ L
Sbjct: 280 RGKNVAKGQLTFYAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTR- 338
Query: 234 GDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTV 285
D IQ E G + I N+S + C+ N G + A L+V
Sbjct: 339 ----DRIQIE---QGTLNITIVNLSDAG---MYQCVAENKHGVIFSSAELSV 380
Score = 73.2 bits (178), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 83/363 (22%), Positives = 143/363 (39%), Gaps = 33/363 (9%)
Query: 31 RGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTREST 90
+G+P+P + WK NG +D R +VDG+ L ++ D G YQC+ N GT S
Sbjct: 32 KGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSLLINNPNKTQDAGTYQCIATNSFGTIVSR 91
Query: 91 DAVLRV-LVKPYIIRGPKDTTVSASSIIVFECS---VGGDAVLTVHWKRLGSAMPEDRMS 146
+A L+ ++ + R +V +V C G+ + S R
Sbjct: 92 EAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFV 151
Query: 147 VLPSRSLQLSDVRLEDAGEYVCEAENAVGK----------ISASATLTVQMAPIVR-ERP 195
+ +L ++ V D G Y C N V I + + + P + + P
Sbjct: 152 SQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFP 211
Query: 196 SDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQ 255
+ E G C G+P P+ W + + R S+G +L+I
Sbjct: 212 ETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHK-------SNG--ILEIP 262
Query: 256 NVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRC 315
N + A C+ N+ G ++A+ LT PN +I + + + C
Sbjct: 263 NFQQEDAGS-YECVAENSRGKNVAKGQLTFYA-QPNWVQII----NDIHVAMEESVFWEC 316
Query: 316 QVRG--EGSVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWS 373
+ G + + +W + + + R+ + G+L +T V D+G Y CV ++ HG S
Sbjct: 317 KANGRPKPTYRWLKNGDPLLTRDRIQIE-QGTLNITIVNLSDAGMYQCVAENKHGVIFSS 375
Query: 374 ASL 376
A L
Sbjct: 376 AEL 378
>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken
Length = 382
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 96/379 (25%), Positives = 149/379 (39%), Gaps = 40/379 (10%)
Query: 18 AAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQ 77
+A + L C R +P T WK NG + R RLV G + + D G YQ
Sbjct: 20 SAEEKVTLTCRA-RANPPATYRWKMNGTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQ 78
Query: 78 CVVKNVAGTRESTDAVLRV-LVKPYIIRGPKDTTVSASSIIVFECSVGGDA-VLTVHW-- 133
CV N GT S +A LR ++ + ++ ++F CS L+ W
Sbjct: 79 CVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLL 138
Query: 134 KRLGSAMPED--RMSVLPSRSLQLSDVRLEDAGEYVCEAENAV-----------GKISAS 180
+ +P D R + +L ++ D G Y C A + + ++S +
Sbjct: 139 NEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLA 198
Query: 181 ATLTVQMAPIVRER-PSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDN 239
A Q AP ++ + P+D G+ C G+P P W ++D
Sbjct: 199 AEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWR------------KLDG 246
Query: 240 IQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFG 299
Q LL IQNV C N G D + + + P+ VI
Sbjct: 247 SQTSKWLSSEPLLHIQNVDFEDEG-TYECEAENIKGRDTYQGRIIIHA-QPDWLDVITDT 304
Query: 300 PANQTLPLRSEARLRCQVRGE--GSVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSG 357
A+ + S+ R C G+ +V+W R + + S R+ V+G G L + + EDSG
Sbjct: 305 EAD----IGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSG-GELRFSKLVLEDSG 359
Query: 358 EYTCVVKSPHGSASWSASL 376
Y CV ++ HG+ SA L
Sbjct: 360 MYQCVAENKHGTVYASAEL 378
Score = 76.3 bits (186), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 59/238 (24%), Positives = 98/238 (41%), Gaps = 21/238 (8%)
Query: 6 EEFRVQPKSQ-RVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGT--N 62
+EF + + ++ G + C PP +P + W N P +F + R V T N
Sbjct: 101 QEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFP-NFIPADGRRFVSQTTGN 159
Query: 63 LAIQDSRKTDDGRYQC--------VVKNVAG-----TRESTDAVLRVLVKPYIIRGPKDT 109
L I + +D G Y C + K+V + + DA R + P DT
Sbjct: 160 LYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDA--RQYAPSIKAKFPADT 217
Query: 110 TVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCE 169
++ EC G+ V + W++L + +S P L + +V ED G Y CE
Sbjct: 218 YALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSSEPL--LHIQNVDFEDEGTYECE 275
Query: 170 AENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGN 227
AEN G+ + + + P + +D ++G D + C G P P+ W+ +G
Sbjct: 276 AENIKGRDTYQGRIIIHAQPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQ 333
Score = 67.0 bits (162), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 76/175 (43%), Gaps = 7/175 (4%)
Query: 12 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKT 71
P G LEC G+P P + W+K +D + + L L IQ+
Sbjct: 214 PADTYALTGQMVTLECFA-FGNPVPQIKWRK----LDGSQTSKW-LSSEPLLHIQNVDFE 267
Query: 72 DDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTV 131
D+G Y+C +N+ G R++ + + +P + DT S + + C G V
Sbjct: 268 DEGTYECEAENIKG-RDTYQGRIIIHAQPDWLDVITDTEADIGSDLRWSCVASGKPRPAV 326
Query: 132 HWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQ 186
W R G + + L+ S + LED+G Y C AEN G + ASA LTVQ
Sbjct: 327 RWLRDGQPLASQNRIEVSGGELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQ 381
>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion
Complex In Space Group P6522
pdb|3P40|A Chain A, Crystal Structure Of Neurofascin Adhesion Complex In Space
Group P3221
Length = 404
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 80/294 (27%), Positives = 124/294 (42%), Gaps = 45/294 (15%)
Query: 17 VAAGDTALLECGPPRGHPEPTLVWKKNG-HPIDFENSKRLRLVDG-------TNLAIQDS 68
V G L+C PP G P P + W + PI ++ R+ G +N+ +QD
Sbjct: 128 VQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPI----TQDKRVSQGHNGDLYFSNVMLQDM 183
Query: 69 RKTDDGRYQCVVKN--VAGTRESTDAVLRVLVKPYIIRGPKDTTVS-------ASSIIVF 119
+TD Y C + ++ L+VL RG + T S ASS +V
Sbjct: 184 -QTD---YSCNARFHFTHTIQQKNPFTLKVLT----TRGVAERTPSFMYPQGTASSQMVL 235
Query: 120 -------ECSVGGDAVLTVHWKRLGSAMPEDRMSVLP-SRSLQLSDVRLEDAGEYVCEAE 171
EC G + W + G +P D+ +++L++++V ED+GEY C A
Sbjct: 236 RGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFENFNKALRITNVSEEDSGEYFCLAS 295
Query: 172 NAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLI 231
N +G I + ++ V+ AP + P +L L G D +C G+P P+ WM+ G
Sbjct: 296 NKMGSIRHTISVRVKAAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQS 355
Query: 232 YPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTV 285
P N E+ D + Q SR + C N G LA A ++V
Sbjct: 356 APP----NPNREVAGDTIIFRDTQISSRA----VYQCNTSNEHGYLLANAFVSV 401
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 93/386 (24%), Positives = 143/386 (37%), Gaps = 49/386 (12%)
Query: 13 KSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSR--- 69
K V D L+EC +G+P P+ W +N + R+ + + + D R
Sbjct: 25 KDHIVDPRDNILIECEA-KGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGG 83
Query: 70 --KTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKD-TTVSASSIIVFECS-VGG 125
+ +G YQC +N GT S L+V P + D V + + +C+ G
Sbjct: 84 RPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPG 143
Query: 126 DAVLTVHWKRLGSAMP----EDRMSVLPSRSLQLSDVRLEDAG-EYVCEAE-NAVGKISA 179
+ W + S+M + R+S + L S+V L+D +Y C A + I
Sbjct: 144 LPSPVIFW--MSSSMEPITQDKRVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQ 201
Query: 180 SATLTVQMAPI--VRER-PSDLRLE---------VGRDAVFLCGIEGSPPPSTFWMLEGN 227
T+++ V ER PS + + G D + C G P P W +G
Sbjct: 202 KNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGG 261
Query: 228 RSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSG 287
P D+ + L+I NVS + CL N GS S+ V
Sbjct: 262 D---LPSDKAK------FENFNKALRITNVSEEDSGE-YFCLASNKMGSIRHTISVRVKA 311
Query: 288 PDPNPPPVILFGPANQTLPLRSEARLRCQVRG--EGSVQWWRGEREVGSG---PRVNVTG 342
P L P N L + RL C+ G + +VQW + S P V G
Sbjct: 312 -----APYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAG 366
Query: 343 DGSLVLTDVTKEDSGEYTCVVKSPHG 368
D +++ D Y C + HG
Sbjct: 367 D-TIIFRDTQISSRAVYQCNTSNEHG 391
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 72/305 (23%), Positives = 114/305 (37%), Gaps = 49/305 (16%)
Query: 107 KDTTVSASSIIVFECSVGGDAVLTVHW---KRLGSAMPEDRMSVLPSRSLQLSDVR---- 159
KD V I+ EC G+ + HW R + + R+S+ + D R
Sbjct: 25 KDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGGR 84
Query: 160 -LEDAGEYVCEAENAVGK-ISASATLTVQMAPI-VRERPSDLRLEVGRDAVFLCGIE-GS 215
E GEY C A N G +S L V +P+ +E + ++ G C G
Sbjct: 85 PEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGL 144
Query: 216 PPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMN-LLKIQNVSRTAAPLIILCLGVNAA 274
P P FWM + Q + S G N L NV + +
Sbjct: 145 PSPVIFWMSSSMEPIT---------QDKRVSQGHNGDLYFSNV---------MLQDMQTD 186
Query: 275 GSDLARASLTVSGPDPNP--------------PPVILF--GPANQTLPLRS-EARLRCQV 317
S AR T + NP P ++ G A+ + LR + L C
Sbjct: 187 YSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIA 246
Query: 318 RG--EGSVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSAS 375
G + W++ ++ S + +L +T+V++EDSGEY C+ + GS + S
Sbjct: 247 SGVPTPDIAWYKKGGDLPSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTIS 306
Query: 376 LRFES 380
+R ++
Sbjct: 307 VRVKA 311
>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1
Length = 381
Score = 77.0 bits (188), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 60/233 (25%), Positives = 95/233 (40%), Gaps = 26/233 (11%)
Query: 24 LLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGT--NLAIQDSRKTDDGRYQCVVK 81
+L C PP +P + W N P +F + V T NL I + +D G Y C+
Sbjct: 119 MLPCNPPAHYPGLSYRWLLNEFP-NFIPTDGRHFVSQTTGNLYIARTNASDLGNYSCLA- 176
Query: 82 NVAGTRESTDAVL-------------RVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAV 128
+ ST +V R+ R P +T + EC G+ V
Sbjct: 177 -TSHMDFSTKSVFSKFAQLNLAAEDTRLFAPSIKARFPAETYALVGQQVTLECFAFGNPV 235
Query: 129 LTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMA 188
+ W+++ ++ + P+ LQ+ V ED G Y CEAEN+ G+ + + VQ
Sbjct: 236 PRIKWRKVDGSLSPQWTTAEPT--LQIPSVSFEDEGTYECEAENSKGRDTVQGRIIVQAQ 293
Query: 189 PIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEG------NRSLIYPGD 235
P + SD ++G + + C G P P+ W+ G NR + GD
Sbjct: 294 PEWLKVISDTEADIGSNLRWGCAAAGKPRPTVRWLRNGEPLASQNRVEVLAGD 346
Score = 73.9 bits (180), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 90/376 (23%), Positives = 146/376 (38%), Gaps = 40/376 (10%)
Query: 21 DTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVV 80
+ LL C R P T WK NG + E R +LV G + + ++ D G YQC+
Sbjct: 22 EQVLLACRA-RASPPATYRWKMNGTEMKLEPGSRHQLVGGNLVIMNPTKAQDAGVYQCLA 80
Query: 81 KNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSI-IVFECSVGGDAV-LTVHW--KRL 136
N GT S +A+LR + +D + ++ C+ L+ W
Sbjct: 81 SNPVGTVVSREAILRFGFLQEFSKEERDPVKAHEGWGVMLPCNPPAHYPGLSYRWLLNEF 140
Query: 137 GSAMPEDRMSVLPSRS--LQLSDVRLEDAGEYVCEAENAV-----------GKISASATL 183
+ +P D + + L ++ D G Y C A + + +++ +A
Sbjct: 141 PNFIPTDGRHFVSQTTGNLYIARTNASDLGNYSCLATSHMDFSTKSVFSKFAQLNLAAED 200
Query: 184 TVQMAPIVRER-PSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQA 242
T AP ++ R P++ VG+ C G+P P W +VD +
Sbjct: 201 TRLFAPSIKARFPAETYALVGQQVTLECFAFGNPVPRIKWR------------KVDGSLS 248
Query: 243 EITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPAN 302
+ L+I +VS C N+ G D + + V P L ++
Sbjct: 249 PQWTTAEPTLQIPSVSFEDEG-TYECEAENSKGRDTVQGRIIVQA-----QPEWLKVISD 302
Query: 303 QTLPLRSEARLRCQVRGE--GSVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYT 360
+ S R C G+ +V+W R + S RV V G L + ++ EDSG Y
Sbjct: 303 TEADIGSNLRWGCAAAGKPRPTVRWLRNGEPLASQNRVEVLA-GDLRFSKLSLEDSGMYQ 361
Query: 361 CVVKSPHGSASWSASL 376
CV ++ HG+ SA L
Sbjct: 362 CVAENKHGTIYASAEL 377
Score = 70.1 bits (170), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 82/176 (46%), Gaps = 9/176 (5%)
Query: 12 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKT 71
P G LEC G+P P + W+K +D S + + T L I
Sbjct: 213 PAETYALVGQQVTLECFA-FGNPVPRIKWRK----VDGSLSPQWTTAEPT-LQIPSVSFE 266
Query: 72 DDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTV 131
D+G Y+C +N G R++ + V +P ++ DT S + + C+ G TV
Sbjct: 267 DEGTYECEAENSKG-RDTVQGRIIVQAQPEWLKVISDTEADIGSNLRWGCAAAGKPRPTV 325
Query: 132 HWKRLGSAMP-EDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQ 186
W R G + ++R+ VL + L+ S + LED+G Y C AEN G I ASA L VQ
Sbjct: 326 RWLRNGEPLASQNRVEVL-AGDLRFSKLSLEDSGMYQCVAENKHGTIYASAELAVQ 380
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 71/176 (40%), Gaps = 43/176 (24%)
Query: 298 FGPANQTLPL---------RSEARLRCQVRGEGSVQW-WR---GEREVGSGPRVNVTGDG 344
FGP + PL + L C+ R + W+ E ++ G R + G G
Sbjct: 2 FGPVFEDQPLSVLFPEESTEEQVLLACRARASPPATYRWKMNGTEMKLEPGSRHQLVG-G 60
Query: 345 SLVLTDVTK-EDSGEYTCVVKSPHGS-ASWSASLRF----------ESPTNPNIGF---F 389
+LV+ + TK +D+G Y C+ +P G+ S A LRF P + G+
Sbjct: 61 NLVIMNPTKAQDAGVYQCLASNPVGTVVSREAILRFGFLQEFSKEERDPVKAHEGWGVML 120
Query: 390 RAPEPSTYPG----------PPTKPT----LVNQTANGLTLAWSRNNQIGSSSLLG 431
P+ YPG P PT V+QT L +A + + +G+ S L
Sbjct: 121 PCNPPAHYPGLSYRWLLNEFPNFIPTDGRHFVSQTTGNLYIARTNASDLGNYSCLA 176
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 59/281 (20%), Positives = 102/281 (36%), Gaps = 20/281 (7%)
Query: 99 KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAM---PEDRMSVLPSRSLQL 155
+P + P+++T ++ C T WK G+ M P R ++ + +
Sbjct: 9 QPLSVLFPEEST---EEQVLLACRARASPPATYRWKMNGTEMKLEPGSRHQLVGGNLVIM 65
Query: 156 SDVRLEDAGEYVCEAENAVGK-ISASATLTV-QMAPIVRERPSDLRLEVGRDAVFLCGIE 213
+ + +DAG Y C A N VG +S A L + +E ++ G + C
Sbjct: 66 NPTKAQDAGVYQCLASNPVGTVVSREAILRFGFLQEFSKEERDPVKAHEGWGVMLPCNPP 125
Query: 214 GSPPPSTF-WMLEGNRSLIYPGDR--VDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLG 270
P ++ W+L + I R V + N + N S A +
Sbjct: 126 AHYPGLSYRWLLNEFPNFIPTDGRHFVSQTTGNLYIARTNASDLGNYSCLATSHMD--FS 183
Query: 271 VNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRGE--GSVQWWRG 328
+ S A+ +L P + PA + + L C G ++W
Sbjct: 184 TKSVFSKFAQLNLAAEDTRLFAPSIKARFPAETYALVGQQVTLECFAFGNPVPRIKW--- 240
Query: 329 EREV-GSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHG 368
R+V GS T + +L + V+ ED G Y C ++ G
Sbjct: 241 -RKVDGSLSPQWTTAEPTLQIPSVSFEDEGTYECEAENSKG 280
>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4
Length = 192
Score = 76.3 bits (186), Expect = 7e-14, Method: Composition-based stats.
Identities = 53/166 (31%), Positives = 80/166 (48%), Gaps = 14/166 (8%)
Query: 32 GHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTD 91
G PEP + W +NG I+ EN K + T L +++ +D G Y C N AG E
Sbjct: 30 GSPEPAISWFRNGKLIE-ENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEK-Q 87
Query: 92 AVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRL--------GSAMPED 143
A L+V V+P+II+ +TT + + C G+ + + WKR G +
Sbjct: 88 AFLQVFVQPHIIQLKNETTYENGQVTLV-CDAEGEPIPEITWKRAVDGFTFTEGDKSLDG 146
Query: 144 RMSVLP---SRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQ 186
R+ V S SL + DV+L D+G Y CEA + +G S L ++
Sbjct: 147 RIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE 192
Score = 49.3 bits (116), Expect = 1e-05, Method: Composition-based stats.
Identities = 34/133 (25%), Positives = 55/133 (41%), Gaps = 11/133 (8%)
Query: 108 DTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLS--DVRLEDAGE 165
+ T + F C G + W R G + E+ +L + +L+ ++ D G
Sbjct: 13 NATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGP 72
Query: 166 YVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFW--- 222
YVC A N G+ A L V + P + + ++ E G+ +C EG P P W
Sbjct: 73 YVCRATNKAGEDEKQAFLQVFVQPHIIQLKNETTYENGQ-VTLVCDAEGEPIPEITWKRA 131
Query: 223 -----MLEGNRSL 230
EG++SL
Sbjct: 132 VDGFTFTEGDKSL 144
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 54/197 (27%), Positives = 70/197 (35%), Gaps = 39/197 (19%)
Query: 201 EVGRDAVFLCGIEGSPPPSTFW-----MLEGNRSLIYPGDRVD-NIQAEITSDGMNLLKI 254
E G + F C GSP P+ W ++E N I G + ++ I SDG
Sbjct: 17 ERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDG------ 70
Query: 255 QNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLR 314
P + C N AG D +A L V P +I N+T + L
Sbjct: 71 -------GPYV--CRATNKAGEDEKQAFLQVF----VQPHIIQL--KNETTYENGQVTLV 115
Query: 315 CQVRGEG--SVQWWRG-------EREVGSGPRVNVTG---DGSLVLTDVTKEDSGEYTCV 362
C GE + W R E + R+ V G SL + DV DSG Y C
Sbjct: 116 CDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCE 175
Query: 363 VKSPHGSASWSASLRFE 379
S G S L E
Sbjct: 176 AASRIGGHQKSMYLDIE 192
>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
pdb|2IEP|B Chain B, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
Length = 192
Score = 76.3 bits (186), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 79/145 (54%), Gaps = 3/145 (2%)
Query: 33 HPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKN-VAGTRESTD 91
+P+P + W +N I +++ +G L I +DDG Y C N V G ES
Sbjct: 34 YPQPEISWTRNKILIKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTANNGVGGAVESCG 93
Query: 92 AVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED-RMSVLPS 150
A L+V +KP I R P + + V C+ G+ +V W + SA+ E+ R++VL S
Sbjct: 94 A-LQVKMKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLES 152
Query: 151 RSLQLSDVRLEDAGEYVCEAENAVG 175
SL++ +V+ EDAG+Y C A+N++G
Sbjct: 153 GSLRIHNVQKEDAGQYRCVAKNSLG 177
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 78/176 (44%), Gaps = 15/176 (8%)
Query: 206 AVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLI 265
A F+C +E P P W N+ LI ++ + + I +G LL I +V + I
Sbjct: 25 ATFMCAVESYPQPEISWT--RNKILI----KLFDTRYSIRENG-QLLTILSVEDSDDG-I 76
Query: 266 ILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG--EGSV 323
C N G A + P I P N + +A L C G + SV
Sbjct: 77 YCCTANNGVGG----AVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSV 132
Query: 324 QWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFE 379
W +G+ + R+ V GSL + +V KED+G+Y CV K+ G+A +S ++ E
Sbjct: 133 SWIKGDSALRENSRIAVLESGSLRIHNVQKEDAGQYRCVAKNSLGTA-YSKLVKLE 187
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 72/160 (45%), Gaps = 13/160 (8%)
Query: 97 LVKPYIIRGPKDTTVS-ASSIIVFECSVGGDAVLTVHWKR--LGSAMPEDRMSVLPS-RS 152
L K +I P +T + + F C+V + W R + + + R S+ + +
Sbjct: 4 LPKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQL 63
Query: 153 LQLSDVRLEDAGEYVCEAENAVG-KISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCG 211
L + V D G Y C A N VG + + L V+M P + P ++++ G AV C
Sbjct: 64 LTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCT 123
Query: 212 IEGSPPPSTFW------MLEGNR-SLIYPGD-RVDNIQAE 243
G+P PS W + E +R +++ G R+ N+Q E
Sbjct: 124 TMGNPKPSVSWIKGDSALRENSRIAVLESGSLRIHNVQKE 163
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
Query: 12 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKT 71
P + ++ G A+L C G+P+P++ W K G ENS R+ +++ +L I + +K
Sbjct: 107 PINVKIIEGLKAVLPCTT-MGNPKPSVSWIK-GDSALRENS-RIAVLESGSLRIHNVQKE 163
Query: 72 DDGRYQCVVKNVAGTRESTDAVLRVLV 98
D G+Y+CV KN GT S L V V
Sbjct: 164 DAGQYRCVAKNSLGTAYSKLVKLEVEV 190
>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar
pdb|3PXJ|B Chain B, Tandem Ig Repeats Of Dlar
pdb|3PXJ|C Chain C, Tandem Ig Repeats Of Dlar
pdb|3PXJ|D Chain D, Tandem Ig Repeats Of Dlar
Length = 210
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 83/189 (43%), Gaps = 15/189 (7%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQ 66
E +P++Q V G A C RG P P++VW+KNG + S+ L ++I
Sbjct: 10 EIIRKPQNQGVRVGGVASFYCAA-RGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISIL 68
Query: 67 DSRKT----DDGRYQCVVKNVAGTRESTDAVLRVLVK-------PYIIRGPKDTTVSASS 115
DD Y+CV +N G S DA L + P I +GP +
Sbjct: 69 RIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGH 128
Query: 116 IIVFECSVGGDAVLTVHWKRLGSA--MPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENA 173
++ C G+ ++W + + M R S L LQ+ + R ED G+Y C AEN+
Sbjct: 129 TVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYS-LKDGFLQIENSREEDQGKYECVAENS 187
Query: 174 VGKISASAT 182
+G + AT
Sbjct: 188 MGTEHSKAT 196
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 91/199 (45%), Gaps = 23/199 (11%)
Query: 189 PIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEIT--- 245
P + +P + + VG A F C G PPPS W G +V Q+ T
Sbjct: 9 PEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGK--------KVSGTQSRYTVLE 60
Query: 246 -SDGMNLLKIQNVS--RTAAPLIILCLGVNAAGSDL-ARASLTVSGPDPNPP--PVILFG 299
G+++L+I+ V R AP C+ N G + A A+LT+ D P PVI G
Sbjct: 61 QPGGISILRIEPVRAGRDDAPY--ECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQG 118
Query: 300 PANQTLPLRSEARLRCQVRGEGS--VQWWRGEREVG-SGPRVNVTGDGSLVLTDVTKEDS 356
P + + + + C+ G + + W + + +V S PR ++ DG L + + +ED
Sbjct: 119 PGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLK-DGFLQIENSREEDQ 177
Query: 357 GEYTCVVKSPHGSASWSAS 375
G+Y CV ++ G+ A+
Sbjct: 178 GKYECVAENSMGTEHSKAT 196
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 90/199 (45%), Gaps = 27/199 (13%)
Query: 100 PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMP--EDRMSVLPSRS----L 153
P IIR P++ V + F C+ GD ++ W++ G + + R +VL L
Sbjct: 9 PEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISIL 68
Query: 154 QLSDVRL-EDAGEYVCEAENAVGK-ISASATLTVQMA-------PIVRERPSDLRLEVGR 204
++ VR D Y C AEN VG +SA ATLT+ P++ + P +EVG
Sbjct: 69 RIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGH 128
Query: 205 DAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEIT-SDGMNLLKIQNVSRTAAP 263
+ C G+P P+ +W+ +VD + DG L+I+N SR
Sbjct: 129 TVLMTCKAIGNPTPNIYWIKNQT--------KVDMSNPRYSLKDG--FLQIEN-SREEDQ 177
Query: 264 LIILCLGVNAAGSDLARAS 282
C+ N+ G++ ++A+
Sbjct: 178 GKYECVAENSMGTEHSKAT 196
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 12 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKT 71
P ++ + G T L+ C G+P P + W KN +D N R L DG L I++SR+
Sbjct: 119 PGTRVIEVGHTVLMTCKA-IGNPTPNIYWIKNQTKVDMSNP-RYSLKDGF-LQIENSREE 175
Query: 72 DDGRYQCVVKNVAGTRESTDAVLRVLVK 99
D G+Y+CV +N GT S L V V+
Sbjct: 176 DQGKYECVAENSMGTEHSKATNLYVKVR 203
>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 304
Score = 73.9 bits (180), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 89/183 (48%), Gaps = 9/183 (4%)
Query: 12 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSK-RLRLVDGTNLAIQDSRK 70
P+ + V TA + C G+P+P + W K+ P+D S R++ + L I+ S +
Sbjct: 115 PQLKVVERTRTATMLCAA-SGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEE 173
Query: 71 TDDGRYQCVVKNVAGTRESTDAVLRVLVK---PYIIRGPKDTTVSASSIIVFECSVGGDA 127
TD G+Y+CV N AG R S+ A L V V+ P P + + C G
Sbjct: 174 TDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSP 233
Query: 128 VLTVHWKRLGSAM-PEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQ 186
+ V W + + PED M V L+L+DV+ D+ Y C A +++G I A A +TV+
Sbjct: 234 MPYVKWMQGAEDLTPEDDMPV-GRNVLELTDVK--DSANYTCVAMSSLGVIEAVAQITVK 290
Query: 187 MAP 189
P
Sbjct: 291 SLP 293
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 82/302 (27%), Positives = 123/302 (40%), Gaps = 43/302 (14%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD-----GTN 62
F +PK Q +G A C G P+P + W K G + NS+R ++ G
Sbjct: 9 FIKEPKDQIGVSGGVASFVCQA-TGDPKPRVTWNKKGKKV---NSQRFETIEFDESAGAV 64
Query: 63 LAIQDSRK-TDDGRYQCVVKNVAGTRESTDAVLRVLVK-------PYIIRGPKDTTVSAS 114
L IQ R D+ Y+CV +N G + A L VL + P I GP+ V +
Sbjct: 65 LRIQPLRTPRDENVYECVAQNSVG-EITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERT 123
Query: 115 SIIVFECSVGGDAVLTVHWKRLGSAMPED------RMSVLPSRSLQLSDVRLEDAGEYVC 168
C+ G+ + W +P D R+ L S +LQ+ D G+Y C
Sbjct: 124 RTATMLCAASGNPDPEITW--FKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYEC 181
Query: 169 EAENAVG-KISASATLTVQ---MAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWML 224
A N+ G + S+ A L V+ +AP P + G + C GSP P WM
Sbjct: 182 VATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWM- 240
Query: 225 EGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLT 284
+G L D G N+L++ +V +A C+ +++ G A A +T
Sbjct: 241 QGAEDLTPEDD---------MPVGRNVLELTDVKDSAN---YTCVAMSSLGVIEAVAQIT 288
Query: 285 VS 286
V
Sbjct: 289 VK 290
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 76/303 (25%), Positives = 117/303 (38%), Gaps = 40/303 (13%)
Query: 100 PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVR 159
P I+ PKD + + F C GD V W + G + R + + +R
Sbjct: 7 PRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLR 66
Query: 160 LE------DAGEYVCEAENAVGKISASATLTVQMA-------PIVRERPSDLRLEVGRDA 206
++ D Y C A+N+VG+I+ A LTV P + P +E R A
Sbjct: 67 IQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTA 126
Query: 207 VFLCGIEGSPPPSTFWMLEGNRSLIYPGD------RVDNIQAEITSDGMNLLKIQNVSRT 260
LC G+P P W + P D R+ +++ L+I++ T
Sbjct: 127 TMLCAASGNPDPEITWFKD-----FLPVDPSASNGRIKQLRS-------GALQIESSEET 174
Query: 261 AAPLIILCLGVNAAGSDLAR-ASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG 319
C+ N+AG + A+L V + P IL P + + + C G
Sbjct: 175 DQGK-YECVATNSAGVRYSSPANLYVRVQNVAPRFSIL--PMSHEIMPGGNVNITCVAVG 231
Query: 320 E--GSVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLR 377
V+W +G ++ + V G L LTDV +DS YTCV S G A +
Sbjct: 232 SPMPYVKWMQGAEDLTPEDDMPV-GRNVLELTDV--KDSANYTCVAMSSLGVIEAVAQIT 288
Query: 378 FES 380
+S
Sbjct: 289 VKS 291
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 73/185 (39%), Gaps = 19/185 (10%)
Query: 206 AVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLI 265
A F+C G P P W +G + R + I E +L+IQ + +
Sbjct: 24 ASFVCQATGDPKPRVTWNKKGKK---VNSQRFETI--EFDESAGAVLRIQPLRTPRDENV 78
Query: 266 ILCLGVNAAGSDLARASLTVSGPDPNPP--PVILFGPANQTLPLRSEARLRCQVRG--EG 321
C+ N+ G A LTV D P P I GP + + A + C G +
Sbjct: 79 YECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDP 138
Query: 322 SVQWWRGEREV---GSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRF 378
+ W++ V S R+ G+L + + D G+Y CV A+ SA +R+
Sbjct: 139 EITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECV-------ATNSAGVRY 191
Query: 379 ESPTN 383
SP N
Sbjct: 192 SSPAN 196
>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Drosophila Receptor Protein Tyrosine Phosphatase Dlar
Length = 212
Score = 73.9 bits (180), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 83/189 (43%), Gaps = 15/189 (7%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQ 66
E +P++Q V G A C RG P P++VW+KNG + S+ L ++I
Sbjct: 8 EIIRKPQNQGVRVGGVASFYCAA-RGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISIL 66
Query: 67 DSRKT----DDGRYQCVVKNVAGTRESTDAVLRVLVK-------PYIIRGPKDTTVSASS 115
DD Y+CV +N G S DA L + P I +GP +
Sbjct: 67 RIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGH 126
Query: 116 IIVFECSVGGDAVLTVHWKRLGSA--MPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENA 173
++ C G+ ++W + + M R S L LQ+ + R ED G+Y C AEN+
Sbjct: 127 TVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYS-LKDGFLQIENSREEDQGKYECVAENS 185
Query: 174 VGKISASAT 182
+G + AT
Sbjct: 186 MGTEHSKAT 194
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 91/199 (45%), Gaps = 23/199 (11%)
Query: 189 PIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEIT--- 245
P + +P + + VG A F C G PPPS W G +V Q+ T
Sbjct: 7 PEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGK--------KVSGTQSRYTVLE 58
Query: 246 -SDGMNLLKIQNVS--RTAAPLIILCLGVNAAGSDL-ARASLTVSGPDPNPP--PVILFG 299
G+++L+I+ V R AP C+ N G + A A+LT+ D P PVI G
Sbjct: 59 QPGGISILRIEPVRAGRDDAPY--ECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQG 116
Query: 300 PANQTLPLRSEARLRCQVRGEGS--VQWWRGEREVG-SGPRVNVTGDGSLVLTDVTKEDS 356
P + + + + C+ G + + W + + +V S PR ++ DG L + + +ED
Sbjct: 117 PGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLK-DGFLQIENSREEDQ 175
Query: 357 GEYTCVVKSPHGSASWSAS 375
G+Y CV ++ G+ A+
Sbjct: 176 GKYECVAENSMGTEHSKAT 194
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 93/199 (46%), Gaps = 27/199 (13%)
Query: 100 PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMP--EDRMSVLPS----RSL 153
P IIR P++ V + F C+ GD ++ W++ G + + R +VL L
Sbjct: 7 PEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISIL 66
Query: 154 QLSDVRL-EDAGEYVCEAENAVGK-ISASATLTVQMA-------PIVRERPSDLRLEVGR 204
++ VR D Y C AEN VG +SA ATLT+ P++ + P +EVG
Sbjct: 67 RIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGH 126
Query: 205 DAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEIT-SDGMNLLKIQNVSRTAAP 263
+ C G+P P+ +W+ N++ +VD + DG L+I+N SR
Sbjct: 127 TVLMTCKAIGNPTPNIYWIK--NQT------KVDMSNPRYSLKDG--FLQIEN-SREEDQ 175
Query: 264 LIILCLGVNAAGSDLARAS 282
C+ N+ G++ ++A+
Sbjct: 176 GKYECVAENSMGTEHSKAT 194
Score = 56.6 bits (135), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 12 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKT 71
P ++ + G T L+ C G+P P + W KN +D N R L DG L I++SR+
Sbjct: 117 PGTRVIEVGHTVLMTC-KAIGNPTPNIYWIKNQTKVDMSNP-RYSLKDGF-LQIENSREE 173
Query: 72 DDGRYQCVVKNVAGTRESTDAVLRVLVK 99
D G+Y+CV +N GT S L V V+
Sbjct: 174 DQGKYECVAENSMGTEHSKATNLYVKVR 201
>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
pdb|3OJV|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
Length = 226
Score = 73.2 bits (178), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 65/202 (32%), Positives = 93/202 (46%), Gaps = 28/202 (13%)
Query: 9 RVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRL---RLVDGTNLAI 65
+++ K V A T +C P G P+PTL W KNG +F+ R+ ++ T I
Sbjct: 21 KMEKKLHAVPAAKTVKFKC-PSSGTPQPTLRWLKNGK--EFKPDHRIGGYKVRYATWSII 77
Query: 66 QDSR-KTDDGRYQCVVKNVAGTREST---DAVLRVLVKPYIIRG-PKDTTVSASSIIVFE 120
DS +D G Y C+V+N G+ T D V R +P + G P + TV+ S + F
Sbjct: 78 MDSVVPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALGSNVEFM 137
Query: 121 CSVGGDAVLTVHWKRL----GSAMPEDRM---SVLPS----------RSLQLSDVRLEDA 163
C V D + W + GS + D + +L + L L +V EDA
Sbjct: 138 CKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDA 197
Query: 164 GEYVCEAENAVGKISASATLTV 185
GEY C A N++G SA LTV
Sbjct: 198 GEYTCLAGNSIGLSHHSAWLTV 219
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 82/193 (42%), Gaps = 20/193 (10%)
Query: 111 VSASSIIVFECSVGGDAVLTVHWKRLGSAM-PEDRMSVLPSR----SLQLSDVRLEDAGE 165
V A+ + F+C G T+ W + G P+ R+ R S+ + V D G
Sbjct: 29 VPAAKTVKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGN 88
Query: 166 YVCEAENAVGKISASATLTV----QMAPIVRE-RPSDLRLEVGRDAVFLCGIEGSPPPST 220
Y C EN G I+ + L V PI++ P++ + +G + F+C + P P
Sbjct: 89 YTCIVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALGSNVEFMCKVYSDPQPHI 148
Query: 221 FWM--LEGNRSLIYPGDRVDNIQ------AEITSDGMNLLKIQNVSRTAAPLIILCLGVN 272
W+ +E N S I P D + +Q T M +L ++NVS A CL N
Sbjct: 149 QWLKHIEVNGSKIGP-DNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEYT-CLAGN 206
Query: 273 AAGSDLARASLTV 285
+ G A LTV
Sbjct: 207 SIGLSHHSAWLTV 219
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 73/187 (39%), Gaps = 24/187 (12%)
Query: 208 FLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIIL 267
F C G+P P+ W+ G P R+ + + + + + +
Sbjct: 37 FKCPSSGTPQPTLRWLKNGKE--FKPDHRIGGYKVRYATWSIIMDSVVPSDKGN----YT 90
Query: 268 CLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRGEGS--VQW 325
C+ N GS L V P+ P + PAN+T+ L S C+V + +QW
Sbjct: 91 CIVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALGSNVEFMCKVYSDPQPHIQW 150
Query: 326 WRGEREVGS--GPR------------VNVTGDGS--LVLTDVTKEDSGEYTCVVKSPHGS 369
+ GS GP VN T L L +V+ ED+GEYTC+ + G
Sbjct: 151 LKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEYTCLAGNSIGL 210
Query: 370 ASWSASL 376
+ SA L
Sbjct: 211 SHHSAWL 217
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/80 (21%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Query: 303 QTLPLRSEARLRCQVRG--EGSVQWWRGEREVGSGPRVN----VTGDGSLVLTDVTKEDS 356
+P + +C G + +++W + +E R+ S+++ V D
Sbjct: 27 HAVPAAKTVKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDK 86
Query: 357 GEYTCVVKSPHGSASWSASL 376
G YTC+V++ +GS + + L
Sbjct: 87 GNYTCIVENEYGSINHTYQL 106
>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1CVS|D Chain D, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1FQ9|C Chain C, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
pdb|1FQ9|D Chain D, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
Length = 225
Score = 73.2 bits (178), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 65/202 (32%), Positives = 93/202 (46%), Gaps = 28/202 (13%)
Query: 9 RVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRL---RLVDGTNLAI 65
+++ K V A T +C P G P+PTL W KNG +F+ R+ ++ T I
Sbjct: 20 KMEKKLHAVPAAKTVKFKC-PSSGTPQPTLRWLKNGK--EFKPDHRIGGYKVRYATWSII 76
Query: 66 QDSR-KTDDGRYQCVVKNVAGTREST---DAVLRVLVKPYIIRG-PKDTTVSASSIIVFE 120
DS +D G Y C+V+N G+ T D V R +P + G P + TV+ S + F
Sbjct: 77 MDSVVPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALGSNVEFM 136
Query: 121 CSVGGDAVLTVHWKRL----GSAMPEDRM---SVLPS----------RSLQLSDVRLEDA 163
C V D + W + GS + D + +L + L L +V EDA
Sbjct: 137 CKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDA 196
Query: 164 GEYVCEAENAVGKISASATLTV 185
GEY C A N++G SA LTV
Sbjct: 197 GEYTCLAGNSIGLSHHSAWLTV 218
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 82/193 (42%), Gaps = 20/193 (10%)
Query: 111 VSASSIIVFECSVGGDAVLTVHWKRLGSAM-PEDRMSVLPSR----SLQLSDVRLEDAGE 165
V A+ + F+C G T+ W + G P+ R+ R S+ + V D G
Sbjct: 28 VPAAKTVKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGN 87
Query: 166 YVCEAENAVGKISASATLTV----QMAPIVRE-RPSDLRLEVGRDAVFLCGIEGSPPPST 220
Y C EN G I+ + L V PI++ P++ + +G + F+C + P P
Sbjct: 88 YTCIVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALGSNVEFMCKVYSDPQPHI 147
Query: 221 FWM--LEGNRSLIYPGDRVDNIQ------AEITSDGMNLLKIQNVSRTAAPLIILCLGVN 272
W+ +E N S I P D + +Q T M +L ++NVS A CL N
Sbjct: 148 QWLKHIEVNGSKIGP-DNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEYT-CLAGN 205
Query: 273 AAGSDLARASLTV 285
+ G A LTV
Sbjct: 206 SIGLSHHSAWLTV 218
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 73/187 (39%), Gaps = 24/187 (12%)
Query: 208 FLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIIL 267
F C G+P P+ W+ G P R+ + + + + + +
Sbjct: 36 FKCPSSGTPQPTLRWLKNGKE--FKPDHRIGGYKVRYATWSIIMDSVVPSDKGN----YT 89
Query: 268 CLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRGEGS--VQW 325
C+ N GS L V P+ P + PAN+T+ L S C+V + +QW
Sbjct: 90 CIVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALGSNVEFMCKVYSDPQPHIQW 149
Query: 326 WRGEREVGS--GPR------------VNVTGDGS--LVLTDVTKEDSGEYTCVVKSPHGS 369
+ GS GP VN T L L +V+ ED+GEYTC+ + G
Sbjct: 150 LKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEYTCLAGNSIGL 209
Query: 370 ASWSASL 376
+ SA L
Sbjct: 210 SHHSAWL 216
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/80 (21%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Query: 303 QTLPLRSEARLRCQVRG--EGSVQWWRGEREVGSGPRVN----VTGDGSLVLTDVTKEDS 356
+P + +C G + +++W + +E R+ S+++ V D
Sbjct: 26 HAVPAAKTVKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDK 85
Query: 357 GEYTCVVKSPHGSASWSASL 376
G YTC+V++ +GS + + L
Sbjct: 86 GNYTCIVENEYGSINHTYQL 105
>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
pdb|1EVT|D Chain D, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
Length = 225
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/202 (32%), Positives = 92/202 (45%), Gaps = 28/202 (13%)
Query: 9 RVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRL---RLVDGTNLAI 65
+++ K V A T +C P G P PTL W KNG +F+ R+ ++ T I
Sbjct: 20 KMEKKLHAVPAAKTVKFKC-PSSGTPNPTLRWLKNGK--EFKPDHRIGGYKVRYATWSII 76
Query: 66 QDSR-KTDDGRYQCVVKNVAGTREST---DAVLRVLVKPYIIRG-PKDTTVSASSIIVFE 120
DS +D G Y C+V+N G+ T D V R +P + G P + TV+ S + F
Sbjct: 77 MDSVVPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALGSNVEFM 136
Query: 121 CSVGGDAVLTVHWKRL----GSAMPEDRM---SVLPS----------RSLQLSDVRLEDA 163
C V D + W + GS + D + +L + L L +V EDA
Sbjct: 137 CKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDA 196
Query: 164 GEYVCEAENAVGKISASATLTV 185
GEY C A N++G SA LTV
Sbjct: 197 GEYTCLAGNSIGLSHHSAWLTV 218
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 82/193 (42%), Gaps = 20/193 (10%)
Query: 111 VSASSIIVFECSVGGDAVLTVHWKRLGSAM-PEDRMSVLPSR----SLQLSDVRLEDAGE 165
V A+ + F+C G T+ W + G P+ R+ R S+ + V D G
Sbjct: 28 VPAAKTVKFKCPSSGTPNPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGN 87
Query: 166 YVCEAENAVGKISASATLTV----QMAPIVRE-RPSDLRLEVGRDAVFLCGIEGSPPPST 220
Y C EN G I+ + L V PI++ P++ + +G + F+C + P P
Sbjct: 88 YTCIVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALGSNVEFMCKVYSDPQPHI 147
Query: 221 FWM--LEGNRSLIYPGDRVDNIQ------AEITSDGMNLLKIQNVSRTAAPLIILCLGVN 272
W+ +E N S I P D + +Q T M +L ++NVS A CL N
Sbjct: 148 QWLKHIEVNGSKIGP-DNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEYT-CLAGN 205
Query: 273 AAGSDLARASLTV 285
+ G A LTV
Sbjct: 206 SIGLSHHSAWLTV 218
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 73/187 (39%), Gaps = 24/187 (12%)
Query: 208 FLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIIL 267
F C G+P P+ W+ G P R+ + + + + + +
Sbjct: 36 FKCPSSGTPNPTLRWLKNGKE--FKPDHRIGGYKVRYATWSIIMDSVVPSDKGN----YT 89
Query: 268 CLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG--EGSVQW 325
C+ N GS L V P+ P + PAN+T+ L S C+V + +QW
Sbjct: 90 CIVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALGSNVEFMCKVYSDPQPHIQW 149
Query: 326 WRGEREVGS--GPR------------VNVTGDGS--LVLTDVTKEDSGEYTCVVKSPHGS 369
+ GS GP VN T L L +V+ ED+GEYTC+ + G
Sbjct: 150 LKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDAGEYTCLAGNSIGL 209
Query: 370 ASWSASL 376
+ SA L
Sbjct: 210 SHHSAWL 216
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/80 (21%), Positives = 35/80 (43%), Gaps = 6/80 (7%)
Query: 303 QTLPLRSEARLRCQVRG--EGSVQWWRGEREVGSGPRVN----VTGDGSLVLTDVTKEDS 356
+P + +C G +++W + +E R+ S+++ V D
Sbjct: 26 HAVPAAKTVKFKCPSSGTPNPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDK 85
Query: 357 GEYTCVVKSPHGSASWSASL 376
G YTC+V++ +GS + + L
Sbjct: 86 GNYTCIVENEYGSINHTYQL 105
>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5S|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 394
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 97/390 (24%), Positives = 148/390 (37%), Gaps = 58/390 (14%)
Query: 23 ALLECGPPRGHPEPTLVW-KKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGR------ 75
A +EC G+P P ++W + +G + + LR + + + +D R
Sbjct: 28 AEIEC-KASGNPMPEIIWIRSDGTAVG--DVPGLRQISSDGKLVFPPFRAEDYRQEVHAQ 84
Query: 76 -YQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFEC---SVGGDAVLTV 131
Y C+ +N G+ S D +R +V Y V + V +C S D V V
Sbjct: 85 VYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVV 144
Query: 132 HW------KRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGE-YVCEAENAVG---KISASA 181
W A + + VLPS L + +V ED + Y C ++ + ++SA+
Sbjct: 145 SWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATK 204
Query: 182 TLTVQMAPIVRERPSD-------LRLEVGRDAVFLCGIEGSPPPSTFW--MLEG--NRSL 230
V PI P L L V LC +G P PS W +EG +
Sbjct: 205 GRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQA 264
Query: 231 IYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDP 290
+ DRV + G ++K V + LC+ N+ G + LTV+ P
Sbjct: 265 VVLNDRVKQVS------GTLIIKDAVVEDSGK---YLCVVNNSVGGESVETVLTVTAPLS 315
Query: 291 NPPPVILFGPANQTLPLRSEARLRCQVRGE--GSVQWWRGEREVGSGPRVNVTGDGSLVL 348
P QT+ A CQ G +V W + + +G V L +
Sbjct: 316 AK-----IDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESV-------LRI 363
Query: 349 TDVTKEDSGEYTCVVKSPHGSASWSASLRF 378
V KED G Y C V++ SA SA L+
Sbjct: 364 ESVKKEDKGMYQCFVRNDRESAEASAELKL 393
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 77/180 (42%), Gaps = 14/180 (7%)
Query: 10 VQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENS----KRLRLVDGTNLAI 65
VQ + + A +LL C P +G P P+ W K + + R++ V GT L I
Sbjct: 224 VQKPLELMVAHTISLL-C-PAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGT-LII 280
Query: 66 QDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGG 125
+D+ D G+Y CVV N G ES + VL V P TV VF C G
Sbjct: 281 KDAVVEDSGKYLCVVNNSVGG-ESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTG 339
Query: 126 DAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTV 185
+ + TV W + G A+ L++ V+ ED G Y C N ASA L +
Sbjct: 340 NPIKTVSWMKDGKAIGHS------ESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKL 393
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 79/182 (43%), Gaps = 19/182 (10%)
Query: 100 PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLS--- 156
P +++ P + V+ + I C G + W + + VL R Q+S
Sbjct: 221 PALVQKPLELMVAHT--ISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTL 278
Query: 157 ---DVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIE 213
D +ED+G+Y+C N+VG S LTV + P ++ GR AVF C
Sbjct: 279 IIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYT 338
Query: 214 GSPPPSTFWMLEG-----NRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILC 268
G+P + WM +G + S++ R+++++ E GM ++N +A L
Sbjct: 339 GNPIKTVSWMKDGKAIGHSESVL----RIESVKKE--DKGMYQCFVRNDRESAEASAELK 392
Query: 269 LG 270
LG
Sbjct: 393 LG 394
Score = 33.5 bits (75), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 344 GSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNI 386
G+L++ D EDSG+Y CVV + G S L +P + I
Sbjct: 276 GTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKI 318
>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity
Length = 388
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 97/390 (24%), Positives = 148/390 (37%), Gaps = 58/390 (14%)
Query: 23 ALLECGPPRGHPEPTLVW-KKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGR------ 75
A +EC G+P P ++W + +G + + LR + + + +D R
Sbjct: 22 AEIECKA-SGNPMPEIIWIRSDGTAVG--DVPGLRQISSDGKLVFPPFRAEDYRQEVHAQ 78
Query: 76 -YQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFEC---SVGGDAVLTV 131
Y C+ +N G+ S D +R +V Y V + V +C S D V V
Sbjct: 79 VYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVV 138
Query: 132 HW------KRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGE-YVCEAENAVG---KISASA 181
W A + + VLPS L + +V ED + Y C ++ + ++SA+
Sbjct: 139 SWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATK 198
Query: 182 TLTVQMAPIVRERPSD-------LRLEVGRDAVFLCGIEGSPPPSTFW--MLEG--NRSL 230
V PI P L L V LC +G P PS W +EG +
Sbjct: 199 GRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQA 258
Query: 231 IYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDP 290
+ DRV + G ++K V + LC+ N+ G + LTV+ P
Sbjct: 259 VVLNDRVKQVS------GTLIIKDAVVEDSGK---YLCVVNNSVGGESVETVLTVTAPLS 309
Query: 291 NPPPVILFGPANQTLPLRSEARLRCQVRGE--GSVQWWRGEREVGSGPRVNVTGDGSLVL 348
P QT+ A CQ G +V W + + +G V L +
Sbjct: 310 AK-----IDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESV-------LRI 357
Query: 349 TDVTKEDSGEYTCVVKSPHGSASWSASLRF 378
V KED G Y C V++ SA SA L+
Sbjct: 358 ESVKKEDKGMYQCFVRNDRESAEASAELKL 387
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 56/180 (31%), Positives = 77/180 (42%), Gaps = 14/180 (7%)
Query: 10 VQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENS----KRLRLVDGTNLAI 65
VQ + + A +LL C P +G P P+ W K + + R++ V GT L I
Sbjct: 218 VQKPLELMVAHTISLL-C-PAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGT-LII 274
Query: 66 QDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGG 125
+D+ D G+Y CVV N G ES + VL V P TV VF C G
Sbjct: 275 KDAVVEDSGKYLCVVNNSVGG-ESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTG 333
Query: 126 DAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTV 185
+ + TV W + G A+ L++ V+ ED G Y C N ASA L +
Sbjct: 334 NPIKTVSWMKDGKAIGHS------ESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKL 387
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 79/182 (43%), Gaps = 19/182 (10%)
Query: 100 PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLS--- 156
P +++ P + V+ + I C G + W + + VL R Q+S
Sbjct: 215 PALVQKPLELMVAHT--ISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTL 272
Query: 157 ---DVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIE 213
D +ED+G+Y+C N+VG S LTV + P ++ GR AVF C
Sbjct: 273 IIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYT 332
Query: 214 GSPPPSTFWMLEG-----NRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILC 268
G+P + WM +G + S++ R+++++ E GM ++N +A L
Sbjct: 333 GNPIKTVSWMKDGKAIGHSESVL----RIESVKKE--DKGMYQCFVRNDRESAEASAELK 386
Query: 269 LG 270
LG
Sbjct: 387 LG 388
Score = 33.5 bits (75), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 344 GSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNI 386
G+L++ D EDSG+Y CVV + G S L +P + I
Sbjct: 270 GTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKI 312
>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam
Length = 291
Score = 70.9 bits (172), Expect = 3e-12, Method: Composition-based stats.
Identities = 68/288 (23%), Positives = 115/288 (39%), Gaps = 18/288 (6%)
Query: 10 VQPKSQRVAAGDTALLECGPPRGHPEPTLVW-KKNGHPIDFENSKRLRLV----DGTNLA 64
+ P ++ G++ C + + W NG + N +R+ +V D + L
Sbjct: 7 IVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLS-PNQQRISVVWNDDDSSTLT 65
Query: 65 IQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVG 124
I ++ D G Y+CVV GT+ +++ K P V C V
Sbjct: 66 IYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVV 125
Query: 125 GDAVLTVHWKRLGSAM---PEDRMSVLPSRSLQLSDVRLEDAGEYVCEAEN-AVGKIS-A 179
T+ WK G + + R VL + LQ+ ++ D G Y CE A G+I+
Sbjct: 126 SSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFK 185
Query: 180 SATLTVQMAPIVRERPS--DLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRV 237
+ V + P V+ R S + +G+ +C +G P P+ W +G +
Sbjct: 186 DIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPI----ENEE 241
Query: 238 DNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTV 285
++ + I SD + L I+NV + + C+ N AG A L V
Sbjct: 242 EDDEKHIFSDDSSELTIRNVDKNDEAEYV-CIAENKAGEQDASIHLKV 288
Score = 63.2 bits (152), Expect = 8e-10, Method: Composition-based stats.
Identities = 50/187 (26%), Positives = 80/187 (42%), Gaps = 10/187 (5%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQD 67
F+ P Q G+ A++ C P PT++WK G + + R ++ L I+
Sbjct: 103 FKNAPTPQEFKEGEDAVIVCDVVSSLP-PTIIWKHKGRDVILKKDVRFIVLSNNYLQIRG 161
Query: 68 SRKTDDGRYQCVVKNVA-GTRESTDAVLRVLVKPYII--RGPKDTTVSASSIIVFECSVG 124
+KTD+G Y+C + +A G D + V V P + + + T + + C
Sbjct: 162 IKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDAD 221
Query: 125 GDAVLTVHWKRLGSAM----PEDRMSVLP--SRSLQLSDVRLEDAGEYVCEAENAVGKIS 178
G T+ W + G + +D + S L + +V D EYVC AEN G+
Sbjct: 222 GFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQD 281
Query: 179 ASATLTV 185
AS L V
Sbjct: 282 ASIHLKV 288
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 71/294 (24%), Positives = 117/294 (39%), Gaps = 37/294 (12%)
Query: 106 PKDTTVSASSIIVFECSVGGDAV-LTVHW-----KRLGSAMPEDRMSVL----PSRSLQL 155
P +S F C V GDA + W ++L + R+SV+ S +L +
Sbjct: 9 PSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPN--QQRISVVWNDDDSSTLTI 66
Query: 156 SDVRLEDAGEYVCEAENAVGKIS-ASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEG 214
+ ++DAG Y C G S A+ + + + + P+ + G DAV +C +
Sbjct: 67 YNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVS 126
Query: 215 SPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAA 274
S PP+ W +G R +I D ++ + S+ N L+I+ + +T
Sbjct: 127 SLPPTIIWKHKG-RDVILKKD----VRFIVLSN--NYLQIRGIKKTDEGT------YRCE 173
Query: 275 GSDLARASLTVSGPDP--NPPPVILFGPA--NQTLPLRSEARLRCQVRG--EGSVQWWRG 328
G LAR + N PP + + N T L L C G E ++ W +
Sbjct: 174 GRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKD 233
Query: 329 ----EREVGSGPRVNVTGDGS-LVLTDVTKEDSGEYTCVVKSPHGSASWSASLR 377
E E + + D S L + +V K D EY C+ ++ G S L+
Sbjct: 234 GEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLK 287
>pdb|3OJM|B Chain B, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring P253r Apert Mutation
Length = 231
Score = 69.7 bits (169), Expect = 7e-12, Method: Composition-based stats.
Identities = 61/207 (29%), Positives = 92/207 (44%), Gaps = 29/207 (14%)
Query: 9 RVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN----LA 64
+++ + V A +T C P G+P PT+ W KNG +F+ R+ N L
Sbjct: 23 KMEKRLHAVPAANTVKFRC-PAGGNPMPTMRWLKNGK--EFKQEHRIGGYKVRNQHWSLI 79
Query: 65 IQDSRKTDDGRYQCVVKNVAGTREST---DAVLRVLVKPYIIRG-PKDTTVSASSIIVFE 120
++ +D G Y CVV+N G+ T D V R +P + G P + + + F
Sbjct: 80 MESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFV 139
Query: 121 CSVGGDAVLTVHW----KRLGSAMPEDRMSVLP-----------SRSLQLSDVRLEDAGE 165
C V DA + W ++ GS D + L + L L +V DAGE
Sbjct: 140 CKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGE 199
Query: 166 YVCEAENAVGKISASATLTV---QMAP 189
Y+C+ N +G+ + SA LTV Q AP
Sbjct: 200 YICKVSNYIGQANQSAWLTVLPKQQAP 226
Score = 34.3 bits (77), Expect = 0.31, Method: Composition-based stats.
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 17/100 (17%)
Query: 294 PVILFG-PANQTLPLRSEARLRCQVRGEGS--VQWWRGEREVGS--GPR----------- 337
P++ G PAN + + + C+V + +QW + + GS GP
Sbjct: 118 PILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHS 177
Query: 338 -VNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASL 376
+N + L L +VT+ D+GEY C V + G A+ SA L
Sbjct: 178 GINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWL 217
Score = 33.1 bits (74), Expect = 0.84, Method: Composition-based stats.
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 6/73 (8%)
Query: 303 QTLPLRSEARLRCQVRGEG--SVQWWRGEREVGSGPRVN----VTGDGSLVLTDVTKEDS 356
+P + + RC G +++W + +E R+ SL++ V D
Sbjct: 29 HAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDK 88
Query: 357 GEYTCVVKSPHGS 369
G YTCVV++ +GS
Sbjct: 89 GNYTCVVENEYGS 101
>pdb|3S97|C Chain C, Ptprz Cntn1 Complex
pdb|3S97|D Chain D, Ptprz Cntn1 Complex
Length = 201
Score = 68.2 bits (165), Expect = 2e-11, Method: Composition-based stats.
Identities = 54/183 (29%), Positives = 79/183 (43%), Gaps = 13/183 (7%)
Query: 16 RVAAGDTALLECGPPRGHPEP-TLVWKKNGHPIDFENSKRLRLVDGTN--LAIQDSRKTD 72
RV G +L C PP P+ + W N P+ KR R V TN L I + +D
Sbjct: 19 RVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKR-RFVSQTNGNLYIANVEASD 77
Query: 73 DGRYQCVVKNVAGTRESTDAVLRVL------VKPY---IIRGPKDTTVSASSIIVFECSV 123
G Y C V + + T+ + ++ KPY I+ KD + EC
Sbjct: 78 KGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFA 137
Query: 124 GGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATL 183
G+ V + W+++ MP L++ +++LED G Y CEAEN GK A +
Sbjct: 138 LGNPVPDIRWRKVLEPMPSTAEISTSGAVLKIFNIQLEDEGIYECEAENIRGKDKHQARI 197
Query: 184 TVQ 186
VQ
Sbjct: 198 YVQ 200
>pdb|2FDB|P Chain P, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
pdb|2FDB|R Chain R, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
Length = 220
Score = 68.2 bits (165), Expect = 2e-11, Method: Composition-based stats.
Identities = 62/206 (30%), Positives = 91/206 (44%), Gaps = 28/206 (13%)
Query: 9 RVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN----LA 64
+++ + V A +T C P G+P PT+ W KNG +F+ R+ N L
Sbjct: 13 KMEKRLHAVPAANTVKFRC-PAGGNPMPTMRWLKNGK--EFKQEHRIGGYKVRNQHWSLI 69
Query: 65 IQDSRKTDDGRYQCVVKNVAGTREST---DAVLRVLVKPYIIRG-PKDTTVSASSIIVFE 120
++ +D G Y CVV+N G+ T D V R +P + G P + + + F
Sbjct: 70 MESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFV 129
Query: 121 CSVGGDAVLTVHW----KRLGSAMPED---RMSVLPSRSLQLSD----------VRLEDA 163
C V DA + W ++ GS D + VL + + +D V EDA
Sbjct: 130 CKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDA 189
Query: 164 GEYVCEAENAVGKISASATLTVQMAP 189
GEY C A N++G SA LTV AP
Sbjct: 190 GEYTCLAGNSIGISFHSAWLTVLPAP 215
Score = 32.7 bits (73), Expect = 0.97, Method: Composition-based stats.
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 6/73 (8%)
Query: 303 QTLPLRSEARLRCQVRGEG--SVQWWRGEREVGSGPRVN----VTGDGSLVLTDVTKEDS 356
+P + + RC G +++W + +E R+ SL++ V D
Sbjct: 19 HAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDK 78
Query: 357 GEYTCVVKSPHGS 369
G YTCVV++ +GS
Sbjct: 79 GNYTCVVENEYGS 91
Score = 30.0 bits (66), Expect = 5.8, Method: Composition-based stats.
Identities = 30/102 (29%), Positives = 46/102 (45%), Gaps = 19/102 (18%)
Query: 294 PVILFG-PANQTLPLRSEARLRCQVRGEGS--VQWWRGEREVGS--GPR----------- 337
P++ G PAN + + + C+V + +QW + + GS GP
Sbjct: 108 PILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAA 167
Query: 338 -VNVTGDG--SLVLTDVTKEDSGEYTCVVKSPHGSASWSASL 376
VN T L + +VT ED+GEYTC+ + G + SA L
Sbjct: 168 GVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWL 209
>pdb|1IIL|E Chain E, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|F Chain F, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|G Chain G, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|H Chain H, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 68.2 bits (165), Expect = 2e-11, Method: Composition-based stats.
Identities = 62/206 (30%), Positives = 91/206 (44%), Gaps = 28/206 (13%)
Query: 9 RVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN----LA 64
+++ + V A +T C P G+P PT+ W KNG +F+ R+ N L
Sbjct: 15 KMEKRLHAVPAANTVKFRC-PAGGNPMPTMRWLKNGK--EFKQEHRIGGYKVRNQHWSLI 71
Query: 65 IQDSRKTDDGRYQCVVKNVAGTREST---DAVLRVLVKPYIIRG-PKDTTVSASSIIVFE 120
++ +D G Y CVV+N G+ T D V R +P + G P + + + F
Sbjct: 72 MESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFV 131
Query: 121 CSVGGDAVLTVHW----KRLGSAMPED---RMSVLPSRSLQLSD----------VRLEDA 163
C V DA + W ++ GS D + VL + + +D V EDA
Sbjct: 132 CKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDA 191
Query: 164 GEYVCEAENAVGKISASATLTVQMAP 189
GEY C A N++G SA LTV AP
Sbjct: 192 GEYTCLAGNSIGISFHSAWLTVLPAP 217
Score = 32.7 bits (73), Expect = 1.00, Method: Composition-based stats.
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 6/73 (8%)
Query: 303 QTLPLRSEARLRCQVRGEG--SVQWWRGEREVGSGPRVN----VTGDGSLVLTDVTKEDS 356
+P + + RC G +++W + +E R+ SL++ V D
Sbjct: 21 HAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDK 80
Query: 357 GEYTCVVKSPHGS 369
G YTCVV++ +GS
Sbjct: 81 GNYTCVVENEYGS 93
Score = 30.0 bits (66), Expect = 6.2, Method: Composition-based stats.
Identities = 30/102 (29%), Positives = 46/102 (45%), Gaps = 19/102 (18%)
Query: 294 PVILFG-PANQTLPLRSEARLRCQVRGEGS--VQWWRGEREVGS--GPR----------- 337
P++ G PAN + + + C+V + +QW + + GS GP
Sbjct: 110 PILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAA 169
Query: 338 -VNVTGDG--SLVLTDVTKEDSGEYTCVVKSPHGSASWSASL 376
VN T L + +VT ED+GEYTC+ + G + SA L
Sbjct: 170 GVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWL 211
>pdb|3OJ2|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
pdb|3OJ2|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
Length = 231
Score = 68.2 bits (165), Expect = 2e-11, Method: Composition-based stats.
Identities = 61/207 (29%), Positives = 92/207 (44%), Gaps = 29/207 (14%)
Query: 9 RVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN----LA 64
+++ + V A +T C P G+P PT+ W KNG +F+ R+ N L
Sbjct: 23 KMEKRLHAVPAFNTVKFRC-PAGGNPMPTMRWLKNGK--EFKQEHRIGGYKVRNQHWSLI 79
Query: 65 IQDSRKTDDGRYQCVVKNVAGTREST---DAVLRVLVKPYIIRG-PKDTTVSASSIIVFE 120
++ +D G Y CVV+N G+ T D V R +P + G P + + + F
Sbjct: 80 MESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFV 139
Query: 121 CSVGGDAVLTVHW----KRLGSAMPEDRMSVLP-----------SRSLQLSDVRLEDAGE 165
C V DA + W ++ GS D + L + L L +V DAGE
Sbjct: 140 CKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGE 199
Query: 166 YVCEAENAVGKISASATLTV---QMAP 189
Y+C+ N +G+ + SA LTV Q AP
Sbjct: 200 YICKVSNYIGQANQSAWLTVLPKQQAP 226
Score = 36.2 bits (82), Expect = 0.087, Method: Composition-based stats.
Identities = 48/194 (24%), Positives = 75/194 (38%), Gaps = 40/194 (20%)
Query: 208 FLCGIEGSPPPSTFWMLEGN---RSLIYPGDRVDN------IQAEITSDGMNLLKIQNVS 258
F C G+P P+ W+ G + G +V N +++ + SD N
Sbjct: 39 FRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYT------ 92
Query: 259 RTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVR 318
C+ N GS L V P+ P + PAN + + + C+V
Sbjct: 93 ---------CVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVY 143
Query: 319 GEGS--VQWWRGEREVGS--GPR------------VNVTGDGSLVLTDVTKEDSGEYTCV 362
+ +QW + + GS GP +N + L L +VT+ D+GEY C
Sbjct: 144 SDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICK 203
Query: 363 VKSPHGSASWSASL 376
V + G A+ SA L
Sbjct: 204 VSNYIGQANQSAWL 217
Score = 33.1 bits (74), Expect = 0.87, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 8/90 (8%)
Query: 303 QTLPLRSEARLRCQVRGEG--SVQWWRGEREVGSGPRVN----VTGDGSLVLTDVTKEDS 356
+P + + RC G +++W + +E R+ SL++ V D
Sbjct: 29 HAVPAFNTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDK 88
Query: 357 GEYTCVVKSPHGSASWSASLRF--ESPTNP 384
G YTCVV++ +GS + + L SP P
Sbjct: 89 GNYTCVVENEYGSINHTYHLDVVERSPHRP 118
>pdb|1EV2|E Chain E, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|F Chain F, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|G Chain G, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|H Chain H, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
Length = 220
Score = 67.4 bits (163), Expect = 3e-11, Method: Composition-based stats.
Identities = 62/206 (30%), Positives = 91/206 (44%), Gaps = 28/206 (13%)
Query: 9 RVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN----LA 64
+++ + V A +T C P G+P PT+ W KNG +F+ R+ N L
Sbjct: 15 KMEKRLHAVPAANTVKFRC-PAGGNPMPTMRWLKNGK--EFKQEHRIGGYKVRNQHWSLI 71
Query: 65 IQDSRKTDDGRYQCVVKNVAGTREST---DAVLRVLVKPYIIRG-PKDTTVSASSIIVFE 120
++ +D G Y CVV+N G+ T D V R +P + G P + + + F
Sbjct: 72 MESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFV 131
Query: 121 CSVGGDAVLTVHW----KRLGSAMPED---RMSVLPSRSLQLSD----------VRLEDA 163
C V DA + W ++ GS D + VL + + +D V EDA
Sbjct: 132 CKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDA 191
Query: 164 GEYVCEAENAVGKISASATLTVQMAP 189
GEY C A N++G SA LTV AP
Sbjct: 192 GEYTCLAGNSIGISFHSAWLTVLPAP 217
Score = 33.1 bits (74), Expect = 0.81, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 8/90 (8%)
Query: 303 QTLPLRSEARLRCQVRGEG--SVQWWRGEREVGSGPRVN----VTGDGSLVLTDVTKEDS 356
+P + + RC G +++W + +E R+ SL++ V D
Sbjct: 21 HAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDK 80
Query: 357 GEYTCVVKSPHGSASWSASLRF--ESPTNP 384
G YTCVV++ +GS + + L SP P
Sbjct: 81 GNYTCVVENEYGSINHTYHLDVVERSPHRP 110
Score = 31.6 bits (70), Expect = 2.2, Method: Composition-based stats.
Identities = 49/196 (25%), Positives = 75/196 (38%), Gaps = 42/196 (21%)
Query: 208 FLCGIEGSPPPSTFWMLEGN---RSLIYPGDRVDN------IQAEITSDGMNLLKIQNVS 258
F C G+P P+ W+ G + G +V N +++ + SD N
Sbjct: 31 FRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYT------ 84
Query: 259 RTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVR 318
C+ N GS L V P+ P + PAN + + + C+V
Sbjct: 85 ---------CVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVY 135
Query: 319 GEGS--VQWWRGEREVGS--GPR------------VNVTGDG--SLVLTDVTKEDSGEYT 360
+ +QW + + GS GP VN T L + +VT ED+GEYT
Sbjct: 136 SDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYT 195
Query: 361 CVVKSPHGSASWSASL 376
C+ + G + SA L
Sbjct: 196 CLAGNSIGISFHSAWL 211
>pdb|1E0O|B Chain B, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
pdb|1E0O|D Chain D, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
Length = 219
Score = 67.4 bits (163), Expect = 4e-11, Method: Composition-based stats.
Identities = 62/206 (30%), Positives = 91/206 (44%), Gaps = 28/206 (13%)
Query: 9 RVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN----LA 64
+++ + V A +T C P G+P PT+ W KNG +F+ R+ N L
Sbjct: 14 KMEKRLHAVPAANTVKFRC-PAGGNPMPTMRWLKNGK--EFKQEHRIGGYKVRNQHWSLI 70
Query: 65 IQDSRKTDDGRYQCVVKNVAGTREST---DAVLRVLVKPYIIRG-PKDTTVSASSIIVFE 120
++ +D G Y CVV+N G+ T D V R +P + G P + + + F
Sbjct: 71 MESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFV 130
Query: 121 CSVGGDAVLTVHW----KRLGSAMPED---RMSVLPSRSLQLSD----------VRLEDA 163
C V DA + W ++ GS D + VL + + +D V EDA
Sbjct: 131 CKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDA 190
Query: 164 GEYVCEAENAVGKISASATLTVQMAP 189
GEY C A N++G SA LTV AP
Sbjct: 191 GEYTCLAGNSIGISFHSAWLTVLPAP 216
Score = 33.1 bits (74), Expect = 0.84, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 8/90 (8%)
Query: 303 QTLPLRSEARLRCQVRGEG--SVQWWRGEREVGSGPRVN----VTGDGSLVLTDVTKEDS 356
+P + + RC G +++W + +E R+ SL++ V D
Sbjct: 20 HAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDK 79
Query: 357 GEYTCVVKSPHGSASWSASLRF--ESPTNP 384
G YTCVV++ +GS + + L SP P
Sbjct: 80 GNYTCVVENEYGSINHTYHLDVVERSPHRP 109
Score = 31.6 bits (70), Expect = 2.5, Method: Composition-based stats.
Identities = 49/196 (25%), Positives = 75/196 (38%), Gaps = 42/196 (21%)
Query: 208 FLCGIEGSPPPSTFWMLEGN---RSLIYPGDRVDN------IQAEITSDGMNLLKIQNVS 258
F C G+P P+ W+ G + G +V N +++ + SD N
Sbjct: 30 FRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYT------ 83
Query: 259 RTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVR 318
C+ N GS L V P+ P + PAN + + + C+V
Sbjct: 84 ---------CVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVY 134
Query: 319 GEGS--VQWWRGEREVGS--GPR------------VNVTGDG--SLVLTDVTKEDSGEYT 360
+ +QW + + GS GP VN T L + +VT ED+GEYT
Sbjct: 135 SDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYT 194
Query: 361 CVVKSPHGSASWSASL 376
C+ + G + SA L
Sbjct: 195 CLAGNSIGISFHSAWL 210
>pdb|1II4|E Chain E, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|F Chain F, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|G Chain G, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|H Chain H, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 67.0 bits (162), Expect = 5e-11, Method: Composition-based stats.
Identities = 62/206 (30%), Positives = 91/206 (44%), Gaps = 28/206 (13%)
Query: 9 RVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN----LA 64
+++ + V A +T C P G+P PT+ W KNG +F+ R+ N L
Sbjct: 15 KMEKRLHAVPAANTVKFRC-PAGGNPMPTMRWLKNGK--EFKQEHRIGGYKVRNQHWSLI 71
Query: 65 IQDSRKTDDGRYQCVVKNVAGTREST---DAVLRVLVKPYIIRG-PKDTTVSASSIIVFE 120
++ +D G Y CVV+N G+ T D V R +P + G P + + + F
Sbjct: 72 MESVVPSDKGNYTCVVENEYGSINHTYHLDVVERWPHRPILQAGLPANASTVVGGDVEFV 131
Query: 121 CSVGGDAVLTVHW----KRLGSAMPED---RMSVLPSRSLQLSD----------VRLEDA 163
C V DA + W ++ GS D + VL + + +D V EDA
Sbjct: 132 CKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDA 191
Query: 164 GEYVCEAENAVGKISASATLTVQMAP 189
GEY C A N++G SA LTV AP
Sbjct: 192 GEYTCLAGNSIGISFHSAWLTVLPAP 217
Score = 32.7 bits (73), Expect = 1.1, Method: Composition-based stats.
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 6/73 (8%)
Query: 303 QTLPLRSEARLRCQVRGEG--SVQWWRGEREVGSGPRVN----VTGDGSLVLTDVTKEDS 356
+P + + RC G +++W + +E R+ SL++ V D
Sbjct: 21 HAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDK 80
Query: 357 GEYTCVVKSPHGS 369
G YTCVV++ +GS
Sbjct: 81 GNYTCVVENEYGS 93
Score = 30.0 bits (66), Expect = 6.7, Method: Composition-based stats.
Identities = 49/196 (25%), Positives = 75/196 (38%), Gaps = 42/196 (21%)
Query: 208 FLCGIEGSPPPSTFWMLEGN---RSLIYPGDRVDN------IQAEITSDGMNLLKIQNVS 258
F C G+P P+ W+ G + G +V N +++ + SD N
Sbjct: 31 FRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYT------ 84
Query: 259 RTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVR 318
C+ N GS L V P+ P + PAN + + + C+V
Sbjct: 85 ---------CVVENEYGSINHTYHLDVVERWPHRPILQAGLPANASTVVGGDVEFVCKVY 135
Query: 319 GEGS--VQWWRGEREVGS--GPR------------VNVTGDG--SLVLTDVTKEDSGEYT 360
+ +QW + + GS GP VN T L + +VT ED+GEYT
Sbjct: 136 SDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYT 195
Query: 361 CVVKSPHGSASWSASL 376
C+ + G + SA L
Sbjct: 196 CLAGNSIGISFHSAWL 211
>pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex
With Fgf1
Length = 334
Score = 66.2 bits (160), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 89/202 (44%), Gaps = 28/202 (13%)
Query: 9 RVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN----LA 64
R+ K V A +T C P G+P P++ W KNG +F R+ + + L
Sbjct: 127 RMDKKLLAVPAANTVRFRC-PAAGNPTPSISWLKNGR--EFRGEHRIGGIKLRHQQWSLV 183
Query: 65 IQDSRKTDDGRYQCVVKNVAGTREST---DAVLRVLVKPYIIRG-PKDTTVSASSIIVFE 120
++ +D G Y CVV+N G+ T D + R +P + G P + T S + F
Sbjct: 184 MESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFH 243
Query: 121 CSVGGDAVLTVHWKRL----GSAMPED---RMSVLPS----------RSLQLSDVRLEDA 163
C V DA + W + GS + D ++VL + L L +V EDA
Sbjct: 244 CKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDA 303
Query: 164 GEYVCEAENAVGKISASATLTV 185
GEY C A N++G SA L V
Sbjct: 304 GEYTCLAGNSIGFSHHSAWLVV 325
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 73/290 (25%), Positives = 110/290 (37%), Gaps = 55/290 (18%)
Query: 133 WKRLGSAM-PEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAPI- 190
W + G+ + P +R+ V P R LQ+ + ED+G Y C + ++ ++ V AP
Sbjct: 43 WVKDGTGLVPSERVLVGPQR-LQVLNASHEDSGAYSCR-QRLTQRVLCHFSVRVTDAPSS 100
Query: 191 ----------------------VRERPSDLRL---EVGRDAVFLCGIEGSPPPSTFWMLE 225
R D +L F C G+P PS W+
Sbjct: 101 GDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKN 160
Query: 226 GNRSLIYPGD-RVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLT 284
G + G+ R+ I+ + + + R C+ N GS +L
Sbjct: 161 GRE---FRGEHRIGGIKLRHQQWSLVMESVVPSDRGN----YTCVVENKFGSIRQTYTLD 213
Query: 285 VSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRGEGS--VQWWRGEREVGSG------P 336
V P+ P + PANQT L S+ C+V + +QW + GS P
Sbjct: 214 VLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTP 273
Query: 337 RVNV-------TGDGSL---VLTDVTKEDSGEYTCVVKSPHGSASWSASL 376
V V T D L L +VT ED+GEYTC+ + G + SA L
Sbjct: 274 YVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWL 323
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 78/310 (25%), Positives = 113/310 (36%), Gaps = 49/310 (15%)
Query: 19 AGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQC 78
+GD L C PP G P VW K+G S+R+ LV L + ++ D G Y C
Sbjct: 22 SGDAVELSCPPPGGGPMGPTVWVKDG--TGLVPSERV-LVGPQRLQVLNASHEDSGAYSC 78
Query: 79 VVKNVAGTRESTDAVLRVLV----------------------KPYIIR----GPKDTTVS 112
+ R +RV PY R K V
Sbjct: 79 --RQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVP 136
Query: 113 ASSIIVFECSVGGDAVLTVHWKRLGSAMP-EDRMSVLPSR----SLQLSDVRLEDAGEYV 167
A++ + F C G+ ++ W + G E R+ + R SL + V D G Y
Sbjct: 137 AANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYT 196
Query: 168 CEAENAVGKISASATLTV----QMAPIVRE-RPSDLRLEVGRDAVFLCGIEGSPPPSTFW 222
C EN G I + TL V PI++ P++ +G D F C + P W
Sbjct: 197 CVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQW 256
Query: 223 M--LEGNRSLIYPGDR-----VDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAG 275
+ +E N S + P + A T + +L + NV+ A CL N+ G
Sbjct: 257 LKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYT-CLAGNSIG 315
Query: 276 SDLARASLTV 285
A L V
Sbjct: 316 FSHHSAWLVV 325
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 37/88 (42%), Gaps = 8/88 (9%)
Query: 305 LPLRSEARLRCQVRGEG--SVQWWRGEREVGSGPRVN----VTGDGSLVLTDVTKEDSGE 358
+P + R RC G S+ W + RE R+ SLV+ V D G
Sbjct: 135 VPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGN 194
Query: 359 YTCVVKSPHGSASWSASLRF--ESPTNP 384
YTCVV++ GS + +L SP P
Sbjct: 195 YTCVVENKFGSIRQTYTLDVLERSPHRP 222
>pdb|1NUN|B Chain B, Crystal Structure Analysis Of The Fgf10-fgfr2b Complex
Length = 230
Score = 65.9 bits (159), Expect = 1e-10, Method: Composition-based stats.
Identities = 61/207 (29%), Positives = 89/207 (42%), Gaps = 29/207 (14%)
Query: 9 RVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN----LA 64
+ + + V A +T C P G+P PT W KNG +F+ R+ N L
Sbjct: 22 KXEKRLHAVPAANTVKFRC-PAGGNPXPTXRWLKNGK--EFKQEHRIGGYKVRNQHWSLI 78
Query: 65 IQDSRKTDDGRYQCVVKNVAGTREST---DAVLRVLVKPYIIRG-PKDTTVSASSIIVFE 120
+ +D G Y CVV+N G+ T D V R +P + G P + + + F
Sbjct: 79 XESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFV 138
Query: 121 CSVGGDAVLTVHW----KRLGSAMPEDRMSVLP-----------SRSLQLSDVRLEDAGE 165
C V DA + W ++ GS D + L + L L +V DAGE
Sbjct: 139 CKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGE 198
Query: 166 YVCEAENAVGKISASATLTV---QMAP 189
Y+C+ N +G+ + SA LTV Q AP
Sbjct: 199 YICKVSNYIGQANQSAWLTVLPKQQAP 225
Score = 36.2 bits (82), Expect = 0.095, Method: Composition-based stats.
Identities = 46/188 (24%), Positives = 73/188 (38%), Gaps = 28/188 (14%)
Query: 208 FLCGIEGSPPPSTFWMLEGN---RSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPL 264
F C G+P P+ W+ G + G +V N + + + N +
Sbjct: 38 FRCPAGGNPXPTXRWLKNGKEFKQEHRIGGYKVRNQHWSLIXESVVPSDKGNYT------ 91
Query: 265 IILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRGEGS-- 322
C+ N GS L V P+ P + PAN + + + C+V +
Sbjct: 92 ---CVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPH 148
Query: 323 VQWWRGEREVGS--GPR------------VNVTGDGSLVLTDVTKEDSGEYTCVVKSPHG 368
+QW + + GS GP +N + L L +VT+ D+GEY C V + G
Sbjct: 149 IQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIG 208
Query: 369 SASWSASL 376
A+ SA L
Sbjct: 209 QANQSAWL 216
Score = 30.8 bits (68), Expect = 3.6, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 8/90 (8%)
Query: 303 QTLPLRSEARLRCQVRGEG--SVQWWRGEREVGSGPRVN----VTGDGSLVLTDVTKEDS 356
+P + + RC G + +W + +E R+ SL+ V D
Sbjct: 28 HAVPAANTVKFRCPAGGNPXPTXRWLKNGKEFKQEHRIGGYKVRNQHWSLIXESVVPSDK 87
Query: 357 GEYTCVVKSPHGSASWSASLRF--ESPTNP 384
G YTCVV++ +GS + + L SP P
Sbjct: 88 GNYTCVVENEYGSINHTYHLDVVERSPHRP 117
>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
pdb|1BIH|B Chain B, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
Length = 395
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/237 (27%), Positives = 95/237 (40%), Gaps = 52/237 (21%)
Query: 25 LECGPPRGHPEPTLVWKK-------NGHPIDFENSKRLRLVDGTNLAIQDSRKTDDG--- 74
L+C P +P+P + WKK N DF+ +R+ NL K D
Sbjct: 120 LDCVLPNAYPKPLITWKKRLSGADPNADVTDFD--RRITAGPDGNLYFTIVTKEDVSDIY 177
Query: 75 RYQCVVKNVAGTRESTDAVLRVLVKPYIIRG-----------------PKDTTVSASSII 117
+Y C KN A E V++ Y I+G KD A +
Sbjct: 178 KYVCTAKNAAVDEE-------VVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVT 230
Query: 118 VFECSVGGDAVLTVHWKRLGSAM---PEDRMSVLPSRSLQLSDVRL-------EDAGEYV 167
+ C G + + ++ + G + PEDR++ R + S RL ED G Y
Sbjct: 231 MIYCMYGSNPMGYPNYFKNGKDVNGNPEDRIT----RHNRTSGKRLLFKTTLPEDEGVYT 286
Query: 168 CEAENAVGK-ISASATLTVQMAPIVRERPSD-LRLEVGRDAVFLCGIEGSPPPSTFW 222
CE +N VGK S LTV AP ++P + ++ G+D C + G P P+ W
Sbjct: 287 CEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVW 343
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 97/405 (23%), Positives = 145/405 (35%), Gaps = 63/405 (15%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDF-ENSKRLRLVDGTNLAIQ 66
+ QP + +LEC WKK+G ++ E++ LR +G+ L
Sbjct: 9 LKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGS-LVFL 67
Query: 67 DSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDT---TVSASSIIVFECSV 123
+ +D+G YQC + AG S R K Y+I P T T +C +
Sbjct: 68 RPQASDEGHYQCFAETPAGVASSRVISFR---KTYLIASPAKTHEKTPIEGRPFQLDCVL 124
Query: 124 -GGDAVLTVHW-KRLGSAMP-------EDRMSVLPSRSLQLSDVRLEDAGE---YVCEAE 171
+ W KRL A P + R++ P +L + V ED + YVC A+
Sbjct: 125 PNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAK 184
Query: 172 NAVGKISASATLT-------------VQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPP 218
NA + L + P+ + D+ + G + C +P
Sbjct: 185 NAA--VDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMYGSNPMG 242
Query: 219 STFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPL---IILCLGVNAAG 275
+ G P DR I + G LL +T P + C N G
Sbjct: 243 YPNYFKNGKDVNGNPEDR---ITRHNRTSGKRLL-----FKTTLPEDEGVYTCEVDNGVG 294
Query: 276 SDLARA-SLT-VSGP--DPNPPPVILFGPANQ-TLPLRSEARLRCQVRG--EGSVQWWRG 328
+ LT VS P + P VI+ T+P C+V G +V W
Sbjct: 295 KPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIP--------CKVTGLPAPNVVWSHN 346
Query: 329 EREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWS 373
+ + SG R VT D LV+ V D G Y C + HG +
Sbjct: 347 AKPL-SGGRATVT-DSGLVIKGVKNGDKGYYGCRATNEHGDKYFE 389
>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5R|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 391
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 94/394 (23%), Positives = 157/394 (39%), Gaps = 63/394 (15%)
Query: 23 ALLECGPPRGHPEPTLVW-KKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGR------ 75
A +EC G+P P ++W + +G + + LR + + + +D R
Sbjct: 22 AEIECKAS-GNPMPEIIWIRSDGTAVG--DVPGLRQISSDGKLVFPPFRAEDYRQEVHAQ 78
Query: 76 -YQCVVKNVAGTRESTDAVLR-VLVKPYIIRGPKDTTVSASSIIVFECSV---GGDAVLT 130
Y C+ +N G+ S D +R V+++ Y + + +S+ V +C + D V
Sbjct: 79 VYACLARNQFGSIISRDVHVRAVVIQSYESEADNEYVIRGNSV-VMKCEIPSYVADFVFV 137
Query: 131 VHWKRL--------GSAMPEDRMSVLPSRSLQLSDVRLEDAGE-YVCEAENAVG---KIS 178
W +A + + VLPS L + +V ED + Y C ++ + ++S
Sbjct: 138 DLWLDSEGRNYYPNNAAETDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLS 197
Query: 179 ASATLTVQMAPI--VRER--PSD----LRLEVGRDAVFLCGIEGSPPPSTFW--MLEG-- 226
A+ V P+ VR + P D + +E+ LC + P PS W +EG
Sbjct: 198 ATKGRLVITEPVGSVRPKVNPQDKHQFIDVELASSYSLLCMAQSYPTPSFRWYKFIEGTT 257
Query: 227 NRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVS 286
+ + DRV + G ++K V + LC+ N+ G + LTV+
Sbjct: 258 RKQAVVLNDRVKQVS------GTLIIKDAVVEDSGK---YLCVVNNSVGGESVETVLTVT 308
Query: 287 GPDPNPPPVILFGPANQTLPLRSEARLRCQVRGE--GSVQWWRGEREVGSGPRVNVTGDG 344
P P QT+ A CQ G +V W + + +G V
Sbjct: 309 APLSAK-----IDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESV------ 357
Query: 345 SLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRF 378
L + V KED G Y C V++ SA SA L+
Sbjct: 358 -LRIESVKKEDKGMYQCFVRNDRESAEASAELKL 390
Score = 33.1 bits (74), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 344 GSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNI 386
G+L++ D EDSG+Y CVV + G S L +P + I
Sbjct: 273 GTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKI 315
>pdb|2EDJ|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human
Roundabout Homolog 2
Length = 100
Score = 62.8 bits (151), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
Query: 293 PPVILFGPANQTLPLRSEARLRCQVRGEG--SVQWWR-GEREVGSGPRVNVTGDGSLVLT 349
PP+IL GPANQTL + A L+C+ G+ + W + G G PR + G+L +
Sbjct: 8 PPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQIK 67
Query: 350 DVTKEDSGEYTCVVKSPHGSASWSASL 376
++ D+G YTCV S G SWSA L
Sbjct: 68 NLRISDTGTYTCVATSSSGETSWSAVL 94
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 100 PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMP--EDRMSVLPSRSLQLSD 157
P I++GP + T++ + +C GD + + W + G P + R ++ +LQ+ +
Sbjct: 9 PIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQIKN 68
Query: 158 VRLEDAGEYVCEAENAVGKISASATLTV 185
+R+ D G Y C A ++ G+ S SA L V
Sbjct: 69 LRISDTGTYTCVATSSSGETSWSAVLDV 96
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Query: 12 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKT 71
P +Q +A TALL+C G P P + W K G + + GT L I++ R +
Sbjct: 15 PANQTLAVDGTALLKC-KATGDPLPVISWLKEGFTFPGRDPRATIQEQGT-LQIKNLRIS 72
Query: 72 DDGRYQCVVKNVAGTRESTDAVLRV 96
D G Y CV + +G S AVL V
Sbjct: 73 DTGTYTCVATSSSG-ETSWSAVLDV 96
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 11/99 (11%)
Query: 189 PIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPG-DRVDNIQAEITSD 247
PI+ + P++ L V A+ C G P P W+ EG +PG D IQ + T
Sbjct: 9 PIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEG---FTFPGRDPRATIQEQGT-- 63
Query: 248 GMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVS 286
L+I+N+ R + C+ +++G A L V+
Sbjct: 64 ----LQIKNL-RISDTGTYTCVATSSSGETSWSAVLDVT 97
>pdb|1UEM|A Chain A, Solution Structure Of The First Fibronectin Type Iii
Domain Of Human Kiaa1568 Protein
Length = 117
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 58/109 (53%), Gaps = 17/109 (15%)
Query: 395 STYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLL---GYQVEMYSRPLPSSSPSGDTA 451
S PGPP+KP + + T N +TL+W Q G+ L Y +E +S+ +
Sbjct: 13 SDLPGPPSKPQVTDVTKNSVTLSW----QPGTPGTLPASAYIIEAFSQ----------SV 58
Query: 452 TATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEI 500
+ +W VA +V + + TV L Y F+VRA+N GLS PSP+SD +
Sbjct: 59 SNSWQTVANHVKTTLYTVRGLRPNTIYLFMVRAINPQGLSDPSPMSDPV 107
>pdb|3GRW|A Chain A, Fgfr3 In Complex With A Fab
Length = 241
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 86/202 (42%), Gaps = 27/202 (13%)
Query: 9 RVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV----DGTNLA 64
R+ K V A +T C P G+P P++ W KNG +F R+ + +L
Sbjct: 19 RMDKKLLAVPAANTVRFRC-PAAGNPTPSISWLKNGR--EFRGEHRIGGIKLRHQQWSLV 75
Query: 65 IQDSRKTDDGRYQCVVKNVAGTREST---DAVLRVLVKPYIIRG-PKDTTVSASSIIVFE 120
++ +D G Y CVV+N G+ T D + R +P + G P + T S + F
Sbjct: 76 MESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFH 135
Query: 121 CSVGGDAVLTVHWKRL----GSAMPED------------RMSVLPSRSLQLSDVRLEDAG 164
C V DA + W + GS + D SV L+L++V D G
Sbjct: 136 CKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGG 195
Query: 165 EYVCEAENAVGKISASATLTVQ 186
EY+C A N +G + L+V
Sbjct: 196 EYLCRATNFIGVAEKAFWLSVH 217
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 67/172 (38%), Gaps = 25/172 (14%)
Query: 208 FLCGIEGSPPPSTFWMLEGNRSLIYPGD-RVDNIQAEITSDGMNLLKIQNVSRTAAPLII 266
F C G+P PS W+ G + G+ R+ I+ + + + R
Sbjct: 35 FRCPAAGNPTPSISWLKNGRE---FRGEHRIGGIKLRHQQWSLVMESVVPSDRGN----Y 87
Query: 267 LCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRGEGS--VQ 324
C+ N GS +L V P+ P + PANQT L S+ C+V + +Q
Sbjct: 88 TCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQ 147
Query: 325 WWRGEREVGS--GP-------------RVNVTGDGSLVLTDVTKEDSGEYTC 361
W + GS GP +V D L L +V++ D GEY C
Sbjct: 148 WLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLC 199
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 37/88 (42%), Gaps = 8/88 (9%)
Query: 305 LPLRSEARLRCQVRGEG--SVQWWRGEREVGSGPRVN----VTGDGSLVLTDVTKEDSGE 358
+P + R RC G S+ W + RE R+ SLV+ V D G
Sbjct: 27 VPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGN 86
Query: 359 YTCVVKSPHGSASWSASLRF--ESPTNP 384
YTCVV++ GS + +L SP P
Sbjct: 87 YTCVVENKFGSIRQTYTLDVLERSPHRP 114
>pdb|1DJS|A Chain A, Ligand-binding Portion Of Fibroblast Growth Factor
Receptor 2 In Complex With Fgf1
Length = 216
Score = 61.6 bits (148), Expect = 2e-09, Method: Composition-based stats.
Identities = 60/202 (29%), Positives = 86/202 (42%), Gaps = 28/202 (13%)
Query: 9 RVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN----LA 64
+ + + V A +T C P G+P PT W KNG +F+ R+ N L
Sbjct: 15 KXEKRLHAVPAANTVKFRC-PAGGNPXPTXRWLKNGK--EFKQEHRIGGYKVRNQHWSLI 71
Query: 65 IQDSRKTDDGRYQCVVKNVAGTREST---DAVLRVLVKPYIIRG-PKDTTVSASSIIVFE 120
+ +D G Y CVV+N G+ T D V R +P + G P + + + F
Sbjct: 72 XESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFV 131
Query: 121 CSVGGDAVLTVHW----KRLGSAMPED---RMSVLPSRSLQLSD----------VRLEDA 163
C V DA + W ++ GS D + VL + + +D V EDA
Sbjct: 132 CKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDA 191
Query: 164 GEYVCEAENAVGKISASATLTV 185
GEY C A N++G SA LTV
Sbjct: 192 GEYTCLAGNSIGISFHSAWLTV 213
Score = 31.6 bits (70), Expect = 2.3, Method: Composition-based stats.
Identities = 47/190 (24%), Positives = 73/190 (38%), Gaps = 30/190 (15%)
Query: 208 FLCGIEGSPPPSTFWMLEGN---RSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPL 264
F C G+P P+ W+ G + G +V N + + + N +
Sbjct: 31 FRCPAGGNPXPTXRWLKNGKEFKQEHRIGGYKVRNQHWSLIXESVVPSDKGNYT------ 84
Query: 265 IILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRGEGS-- 322
C+ N GS L V P+ P + PAN + + + C+V +
Sbjct: 85 ---CVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPH 141
Query: 323 VQWWRGEREVGS--GPR------------VNVTGDG--SLVLTDVTKEDSGEYTCVVKSP 366
+QW + + GS GP VN T L + +VT ED+GEYTC+ +
Sbjct: 142 IQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNS 201
Query: 367 HGSASWSASL 376
G + SA L
Sbjct: 202 IGISFHSAWL 211
Score = 30.8 bits (68), Expect = 4.0, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 8/90 (8%)
Query: 303 QTLPLRSEARLRCQVRGEG--SVQWWRGEREVGSGPRVN----VTGDGSLVLTDVTKEDS 356
+P + + RC G + +W + +E R+ SL+ V D
Sbjct: 21 HAVPAANTVKFRCPAGGNPXPTXRWLKNGKEFKQEHRIGGYKVRNQHWSLIXESVVPSDK 80
Query: 357 GEYTCVVKSPHGSASWSASLRF--ESPTNP 384
G YTCVV++ +GS + + L SP P
Sbjct: 81 GNYTCVVENEYGSINHTYHLDVVERSPHRP 110
>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar
pdb|2YD8|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar In Complex
With Sucrose Octasulphate
Length = 214
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 86/194 (44%), Gaps = 23/194 (11%)
Query: 12 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD-----GTNLAIQ 66
P+ Q +G A C G P+P + W K G + +S+R +++ G+ L IQ
Sbjct: 13 PEDQTGLSGGVASFVC-QATGEPKPRITWMKKGKKV---SSQRFEVIEFDDGAGSVLRIQ 68
Query: 67 DSR-KTDDGRYQCVVKNVAGTRESTDAVLRVLVK-------PYIIRGPKDTTVSASSIIV 118
R + D+ Y+C N G +T A L VL + P I GP+ V +
Sbjct: 69 PLRVQRDEAIYECTATNSLG-EINTSAKLSVLEEEQLPPGFPSIDMGPQLKVVEKARTAT 127
Query: 119 FECSVGGDAVLTVHWKR----LGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAV 174
C+ GG+ + W + + A R+ L S +LQ+ D G+Y C A N+
Sbjct: 128 MLCAAGGNPDPEISWFKDFLPVDPATSNGRIKQLRSGALQIESSEESDQGKYECVATNSA 187
Query: 175 G-KISASATLTVQM 187
G + SA A L V++
Sbjct: 188 GTRYSAPANLYVRV 201
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 49/89 (55%), Gaps = 2/89 (2%)
Query: 12 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSK-RLRLVDGTNLAIQDSRK 70
P+ + V TA + C G+P+P + W K+ P+D S R++ + L I+ S +
Sbjct: 115 PQLKVVEKARTATMLCAAG-GNPDPEISWFKDFLPVDPATSNGRIKQLRSGALQIESSEE 173
Query: 71 TDDGRYQCVVKNVAGTRESTDAVLRVLVK 99
+D G+Y+CV N AGTR S A L V V+
Sbjct: 174 SDQGKYECVATNSAGTRYSAPANLYVRVR 202
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 61/138 (44%), Gaps = 13/138 (9%)
Query: 99 KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRS-----L 153
KP I+ P+D T + + F C G+ + W + G + R V+ L
Sbjct: 6 KPVFIKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVL 65
Query: 154 QLSDVRLE-DAGEYVCEAENAVGKISASATLTV----QMA---PIVRERPSDLRLEVGRD 205
++ +R++ D Y C A N++G+I+ SA L+V Q+ P + P +E R
Sbjct: 66 RIQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEEQLPPGFPSIDMGPQLKVVEKART 125
Query: 206 AVFLCGIEGSPPPSTFWM 223
A LC G+P P W
Sbjct: 126 ATMLCAAGGNPDPEISWF 143
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 80/202 (39%), Gaps = 19/202 (9%)
Query: 189 PIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDG 248
P+ + P D G A F+C G P P WM +G + R + I E
Sbjct: 7 PVFIKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKK---VSSQRFEVI--EFDDGA 61
Query: 249 MNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPP--PVILFGPANQTLP 306
++L+IQ + I C N+ G A L+V + PP P I GP + +
Sbjct: 62 GSVLRIQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEEQLPPGFPSIDMGPQLKVVE 121
Query: 307 LRSEARLRCQVRG--EGSVQWWRGEREVG---SGPRVNVTGDGSLVLTDVTKEDSGEYTC 361
A + C G + + W++ V S R+ G+L + + D G+Y C
Sbjct: 122 KARTATMLCAAGGNPDPEISWFKDFLPVDPATSNGRIKQLRSGALQIESSEESDQGKYEC 181
Query: 362 VVKSPHGSASWSASLRFESPTN 383
V A+ SA R+ +P N
Sbjct: 182 V-------ATNSAGTRYSAPAN 196
>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar
Length = 201
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 81/194 (41%), Gaps = 17/194 (8%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN--LAI 65
F P+ Q +G A C G P+P + W K G + + + + DG L I
Sbjct: 10 FVKVPEDQTGLSGGVASFVC-QATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVLRI 68
Query: 66 QDSR-KTDDGRYQCVVKNVAGTRESTDAVLRVLVK-------PYIIRGPKDTTVSASSII 117
Q R + D+ Y+C N G +T A L VL + P I GP+ V
Sbjct: 69 QPLRVQRDEAIYECTATNSLG-EINTSAKLSVLEEDQLPSGFPTIDMGPQLKVVEKGRTA 127
Query: 118 VFECSVGGDAVLTVHWKR----LGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENA 173
C+ GG+ + W + + A R+ L S +LQ+ D G+Y C A N+
Sbjct: 128 TMLCAAGGNPDPEISWFKDFLPVDPAASNGRIKQLRSGALQIESSEESDQGKYECVATNS 187
Query: 174 VG-KISASATLTVQ 186
G + SA A L V+
Sbjct: 188 AGTRYSAPANLYVR 201
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 62/138 (44%), Gaps = 13/138 (9%)
Query: 99 KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRS-----L 153
KP ++ P+D T + + F C G+ + W + G + R V+ L
Sbjct: 7 KPVFVKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVL 66
Query: 154 QLSDVRLE-DAGEYVCEAENAVGKISASATLTV----QMA---PIVRERPSDLRLEVGRD 205
++ +R++ D Y C A N++G+I+ SA L+V Q+ P + P +E GR
Sbjct: 67 RIQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEDQLPSGFPTIDMGPQLKVVEKGRT 126
Query: 206 AVFLCGIEGSPPPSTFWM 223
A LC G+P P W
Sbjct: 127 ATMLCAAGGNPDPEISWF 144
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 80/202 (39%), Gaps = 19/202 (9%)
Query: 189 PIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDG 248
P+ + P D G A F+C G P P WM +G + R + I E
Sbjct: 8 PVFVKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKK---VSSQRFEVI--EFDDGA 62
Query: 249 MNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPD--PNPPPVILFGPANQTLP 306
++L+IQ + I C N+ G A L+V D P+ P I GP + +
Sbjct: 63 GSVLRIQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEDQLPSGFPTIDMGPQLKVVE 122
Query: 307 LRSEARLRCQVRG--EGSVQWWRGEREV---GSGPRVNVTGDGSLVLTDVTKEDSGEYTC 361
A + C G + + W++ V S R+ G+L + + D G+Y C
Sbjct: 123 KGRTATMLCAAGGNPDPEISWFKDFLPVDPAASNGRIKQLRSGALQIESSEESDQGKYEC 182
Query: 362 VVKSPHGSASWSASLRFESPTN 383
V A+ SA R+ +P N
Sbjct: 183 V-------ATNSAGTRYSAPAN 197
>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 202
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 85/200 (42%), Gaps = 27/200 (13%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD-----GTN 62
F +PK Q +G A C G P+P + W K G + NS+R ++ G
Sbjct: 9 FIKEPKDQIGVSGGVASFVCQA-TGDPKPRVTWNKKGKKV---NSQRFETIEFDESAGAV 64
Query: 63 LAIQDSRK-TDDGRYQCVVKNVAGTRESTDAVLRVLVK-------PYIIRGPKDTTVSAS 114
L IQ R D+ Y+CV +N G + A L VL + P I GP+ V +
Sbjct: 65 LRIQPLRTPRDENVYECVAQNSVG-EITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERT 123
Query: 115 SIIVFECSVGGDAVLTVHWKRLGSAMPED------RMSVLPSRSLQLSDVRLEDAGEYVC 168
C+ G+ + W +P D R+ L S +LQ+ D G+Y C
Sbjct: 124 RTATMLCAASGNPDPEITW--FKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYEC 181
Query: 169 EAENAVG-KISASATLTVQM 187
A N+ G + S+ A L V++
Sbjct: 182 VATNSAGVRYSSPANLYVRV 201
Score = 52.8 bits (125), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 49/89 (55%), Gaps = 2/89 (2%)
Query: 12 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSK-RLRLVDGTNLAIQDSRK 70
P+ + V TA + C G+P+P + W K+ P+D S R++ + L I+ S +
Sbjct: 115 PQLKVVERTRTATMLCAA-SGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEE 173
Query: 71 TDDGRYQCVVKNVAGTRESTDAVLRVLVK 99
TD G+Y+CV N AG R S+ A L V V+
Sbjct: 174 TDQGKYECVATNSAGVRYSSPANLYVRVR 202
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 54/137 (39%), Gaps = 13/137 (9%)
Query: 100 PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVR 159
P I+ PKD + + F C GD V W + G + R + + +R
Sbjct: 7 PRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLR 66
Query: 160 LE------DAGEYVCEAENAVGKISASATLTVQMA-------PIVRERPSDLRLEVGRDA 206
++ D Y C A+N+VG+I+ A LTV P + P +E R A
Sbjct: 67 IQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTA 126
Query: 207 VFLCGIEGSPPPSTFWM 223
LC G+P P W
Sbjct: 127 TMLCAASGNPDPEITWF 143
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 73/185 (39%), Gaps = 19/185 (10%)
Query: 206 AVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLI 265
A F+C G P P W +G + R + I E +L+IQ + +
Sbjct: 24 ASFVCQATGDPKPRVTWNKKGKK---VNSQRFETI--EFDESAGAVLRIQPLRTPRDENV 78
Query: 266 ILCLGVNAAGSDLARASLTVSGPDPNPP--PVILFGPANQTLPLRSEARLRCQVRG--EG 321
C+ N+ G A LTV D P P I GP + + A + C G +
Sbjct: 79 YECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDP 138
Query: 322 SVQWWRGEREV---GSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRF 378
+ W++ V S R+ G+L + + D G+Y CV A+ SA +R+
Sbjct: 139 EITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECV-------ATNSAGVRY 191
Query: 379 ESPTN 383
SP N
Sbjct: 192 SSPAN 196
>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 214
Score = 56.6 bits (135), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 85/200 (42%), Gaps = 27/200 (13%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD-----GTN 62
F +PK Q +G A C G P+P + W K G + NS+R ++ G
Sbjct: 9 FIKEPKDQIGVSGGVASFVCQA-TGDPKPRVTWNKKGKKV---NSQRFETIEFDESAGAV 64
Query: 63 LAIQDSRK-TDDGRYQCVVKNVAGTRESTDAVLRVLVK-------PYIIRGPKDTTVSAS 114
L IQ R D+ Y+CV +N G + A L VL + P I GP+ V +
Sbjct: 65 LRIQPLRTPRDENVYECVAQNSVG-EITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERT 123
Query: 115 SIIVFECSVGGDAVLTVHWKRLGSAMPED------RMSVLPSRSLQLSDVRLEDAGEYVC 168
C+ G+ + W +P D R+ L S +LQ+ D G+Y C
Sbjct: 124 RTATMLCAASGNPDPEITW--FKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYEC 181
Query: 169 EAENAVG-KISASATLTVQM 187
A N+ G + S+ A L V++
Sbjct: 182 VATNSAGVRYSSPANLYVRV 201
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 49/89 (55%), Gaps = 2/89 (2%)
Query: 12 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSK-RLRLVDGTNLAIQDSRK 70
P+ + V TA + C G+P+P + W K+ P+D S R++ + L I+ S +
Sbjct: 115 PQLKVVERTRTATMLCAA-SGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEE 173
Query: 71 TDDGRYQCVVKNVAGTRESTDAVLRVLVK 99
TD G+Y+CV N AG R S+ A L V V+
Sbjct: 174 TDQGKYECVATNSAGVRYSSPANLYVRVR 202
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 54/137 (39%), Gaps = 13/137 (9%)
Query: 100 PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVR 159
P I+ PKD + + F C GD V W + G + R + + +R
Sbjct: 7 PRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLR 66
Query: 160 LE------DAGEYVCEAENAVGKISASATLTVQMA-------PIVRERPSDLRLEVGRDA 206
++ D Y C A+N+VG+I+ A LTV P + P +E R A
Sbjct: 67 IQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTA 126
Query: 207 VFLCGIEGSPPPSTFWM 223
LC G+P P W
Sbjct: 127 TMLCAASGNPDPEITWF 143
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 73/185 (39%), Gaps = 19/185 (10%)
Query: 206 AVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLI 265
A F+C G P P W +G + R + I E +L+IQ + +
Sbjct: 24 ASFVCQATGDPKPRVTWNKKGKK---VNSQRFETI--EFDESAGAVLRIQPLRTPRDENV 78
Query: 266 ILCLGVNAAGSDLARASLTVSGPDPNPP--PVILFGPANQTLPLRSEARLRCQVRG--EG 321
C+ N+ G A LTV D P P I GP + + A + C G +
Sbjct: 79 YECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDP 138
Query: 322 SVQWWRGEREV---GSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRF 378
+ W++ V S R+ G+L + + D G+Y CV A+ SA +R+
Sbjct: 139 EITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECV-------ATNSAGVRY 191
Query: 379 ESPTN 383
SP N
Sbjct: 192 SSPAN 196
>pdb|3LPW|A Chain A, Crystal Structure Of The Fniii-Tandem A77-A78 From The
A-Band Of Titin
pdb|3LPW|B Chain B, Crystal Structure Of The Fniii-Tandem A77-A78 From The
A-Band Of Titin
Length = 197
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 53/109 (48%), Gaps = 12/109 (11%)
Query: 395 STYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATAT 454
S P PP K TL++ T N ++L+W + G S +LGY VEM ++ +
Sbjct: 100 SERPLPPGKITLMDVTRNSVSLSWEKPEHDGGSRILGYIVEMQTK-----------GSDK 148
Query: 455 WVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLR 503
W AT V T+T L G Y+F V A N G+S P LS ++ +
Sbjct: 149 WATCAT-VKVTEATITGLIQGEEYSFRVSAQNEKGISDPRQLSVPVIAK 196
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 79/225 (35%), Gaps = 64/225 (28%)
Query: 398 PGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVR 457
PGPP + T +TL W G S + Y VE ++ +
Sbjct: 6 PGPPQDLKVKEVTKTSVTLTWDPPLLDGGSKIKNYIVE-----------KRESTRKAYST 54
Query: 458 VATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKG 517
VATN V L G +Y F V A N +G+ P+ +
Sbjct: 55 VATNCHKTSWKVDQLQEGCSYYFRVLAENEYGIGLPAETA-------------------- 94
Query: 518 IFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPMTSTSVKLTWEILNTD------- 570
ES++ + + L G +L+++T SV L+WE D
Sbjct: 95 ------------ESVKASERPLPPGKITLMDVTR------NSVSLSWEKPEHDGGSRILG 136
Query: 571 YIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEF 615
YI V + ++G D A+ A + V A +TGL Y F
Sbjct: 137 YI--VEMQTKGSDKWATCATVKVTEA------TITGLIQGEEYSF 173
>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|B Chain B, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
Length = 212
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 82/204 (40%), Gaps = 22/204 (10%)
Query: 100 PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVR 159
P R P D T + + F C GD + W + G + R V+ S +R
Sbjct: 7 PRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLR 66
Query: 160 LE------DAGEYVCEAENAVGKISASATLTV-------QMAPIVRERPSDLRLEVGRDA 206
++ D Y C A N VG+IS S LTV + P + P +E R A
Sbjct: 67 IQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTA 126
Query: 207 VFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDN--IQAEITSDGMNLLKIQNVSRTAAPL 264
LC G+P P W + P D +N ++ S+ + L+I+ S +
Sbjct: 127 TMLCAASGNPDPEITWFKD-----FLPVDTSNNNGRIKQLRSESIGALQIEQ-SEESDQG 180
Query: 265 IILCLGVNAAGSDL-ARASLTVSG 287
C+ N+AG+ A A+L V G
Sbjct: 181 KYECVATNSAGTRYSAPANLYVRG 204
Score = 52.8 bits (125), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 48/89 (53%), Gaps = 5/89 (5%)
Query: 12 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENS----KRLRLVDGTNLAIQD 67
P+ + V TA + C G+P+P + W K+ P+D N+ K+LR L I+
Sbjct: 115 PQLKVVERTRTATMLCAAS-GNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQ 173
Query: 68 SRKTDDGRYQCVVKNVAGTRESTDAVLRV 96
S ++D G+Y+CV N AGTR S A L V
Sbjct: 174 SEESDQGKYECVATNSAGTRYSAPANLYV 202
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 79/199 (39%), Gaps = 24/199 (12%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN--LAI 65
F P Q +G A C G P P +VW K G + + + + DG+ L I
Sbjct: 9 FTRTPVDQTGVSGGVASFICQAT-GDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRI 67
Query: 66 QDSRK-TDDGRYQCVVKNVAGTRESTDAVLRVLVK-------PYIIRGPKDTTVSASSII 117
Q R D+ Y+CV N G S L VL + P I GP+ V +
Sbjct: 68 QPLRTPRDEAIYECVASNNVG-EISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTA 126
Query: 118 VFECSVGGDAVLTVHWKRLGSAMPED------RMSVLPSRS---LQLSDVRLEDAGEYVC 168
C+ G+ + W +P D R+ L S S LQ+ D G+Y C
Sbjct: 127 TMLCAASGNPDPEITW--FKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYEC 184
Query: 169 EAENAVG-KISASATLTVQ 186
A N+ G + SA A L V+
Sbjct: 185 VATNSAGTRYSAPANLYVR 203
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 74/191 (38%), Gaps = 28/191 (14%)
Query: 206 AVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEIT--SDGM-NLLKIQNVSRTAA 262
A F+C G P P W +G +V N + E+ DG ++L+IQ +
Sbjct: 24 ASFICQATGDPRPKIVWNKKGK--------KVSNQRFEVIEFDDGSGSVLRIQPLRTPRD 75
Query: 263 PLIILCLGVNAAGSDLARASLTVSGPDPNPP--PVILFGPANQTLPLRSEARLRCQVRG- 319
I C+ N G LTV D P P I GP + + A + C G
Sbjct: 76 EAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGN 135
Query: 320 -EGSVQWWRGEREV------GSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASW 372
+ + W++ V G ++ G+L + + D G+Y CV A+
Sbjct: 136 PDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECV-------ATN 188
Query: 373 SASLRFESPTN 383
SA R+ +P N
Sbjct: 189 SAGTRYSAPAN 199
>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii
Length = 389
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 68/164 (41%), Gaps = 15/164 (9%)
Query: 99 KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRL--------GSAMPEDRMSVLP- 149
+P+II+ +TT + + C G+ + + WKR G + R+ V
Sbjct: 1 QPHIIQLKNETTYENGQVTLV-CDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQ 59
Query: 150 --SRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAV 207
S SL + DV+L D+G Y CEA + +G S L ++ AP + G
Sbjct: 60 HGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPIN 119
Query: 208 FLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNL 251
C ++ +PP S W + L+ P N++ T M L
Sbjct: 120 ISCDVKSNPPASIHWRRD---KLVLPAKNTTNLKTYSTGRKMIL 160
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 72/180 (40%), Gaps = 16/180 (8%)
Query: 10 VQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDF-ENSKRL--RL-VDG----T 61
+Q K++ L C G P P + WK+ F E K L R+ V G +
Sbjct: 5 IQLKNETTYENGQVTLVCDA-EGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSS 63
Query: 62 NLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFEC 121
+L I+D + +D GRY C + G + + L + P I + I C
Sbjct: 64 SLHIKDVKLSDSGRYDCEAASRIGGHQKS-MYLDIEYAPKFISNQTIYYSWEGNPINISC 122
Query: 122 SVGGDAVLTVHWKRLGSAMPEDRMSVLPSRS------LQLSDVRLEDAGEYVCEAENAVG 175
V + ++HW+R +P + L + S L+++ D G Y C A N +G
Sbjct: 123 DVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIG 182
>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Chicken Receptor Protein Tyrosine Phosphatase Sigma
Length = 210
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 79/202 (39%), Gaps = 19/202 (9%)
Query: 189 PIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDG 248
P+ ++P D G A F+C G P P W +G + R + I E
Sbjct: 7 PVFIKKPVDQIGVSGGVASFVCQATGDPKPRVTWNKKGKK---VNSQRFETI--EFDESA 61
Query: 249 MNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPP--PVILFGPANQTLP 306
+L+IQ + I C+ N G A LTV D PP P I GP + +
Sbjct: 62 GAVLRIQPLRTPRDENIYECVAQNPHGEVTVHAKLTVLREDQLPPGFPNIDMGPQLKVVE 121
Query: 307 LRSEARLRCQVRG--EGSVQWWRGEREVG---SGPRVNVTGDGSLVLTDVTKEDSGEYTC 361
A + C G + + W++ V S R+ G L + + D G+Y C
Sbjct: 122 RTRTATMLCAASGNPDPEITWFKDFLPVDPSTSNGRIKQLRSGGLQIESSEETDQGKYEC 181
Query: 362 VVKSPHGSASWSASLRFESPTN 383
V AS SA +R+ SP N
Sbjct: 182 V-------ASNSAGVRYSSPAN 196
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Query: 12 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSK-RLRLVDGTNLAIQDSRK 70
P+ + V TA + C G+P+P + W K+ P+D S R++ + L I+ S +
Sbjct: 115 PQLKVVERTRTATMLCAA-SGNPDPEITWFKDFLPVDPSTSNGRIKQLRSGGLQIESSEE 173
Query: 71 TDDGRYQCVVKNVAGTRESTDAVLRVLV 98
TD G+Y+CV N AG R S+ A L V V
Sbjct: 174 TDQGKYECVASNSAGVRYSSPANLYVRV 201
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 83/200 (41%), Gaps = 27/200 (13%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD-----GTN 62
F +P Q +G A C G P+P + W K G + NS+R ++ G
Sbjct: 9 FIKKPVDQIGVSGGVASFVCQA-TGDPKPRVTWNKKGKKV---NSQRFETIEFDESAGAV 64
Query: 63 LAIQDSRK-TDDGRYQCVVKNVAGTRESTDAVLRVLVK-------PYIIRGPKDTTVSAS 114
L IQ R D+ Y+CV +N G + A L VL + P I GP+ V +
Sbjct: 65 LRIQPLRTPRDENIYECVAQNPHG-EVTVHAKLTVLREDQLPPGFPNIDMGPQLKVVERT 123
Query: 115 SIIVFECSVGGDAVLTVHWKRLGSAMPED------RMSVLPSRSLQLSDVRLEDAGEYVC 168
C+ G+ + W +P D R+ L S LQ+ D G+Y C
Sbjct: 124 RTATMLCAASGNPDPEITW--FKDFLPVDPSTSNGRIKQLRSGGLQIESSEETDQGKYEC 181
Query: 169 EAENAVG-KISASATLTVQM 187
A N+ G + S+ A L V++
Sbjct: 182 VASNSAGVRYSSPANLYVRV 201
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 52/139 (37%), Gaps = 13/139 (9%)
Query: 100 PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVR 159
P I+ P D + + F C GD V W + G + R + + +R
Sbjct: 7 PVFIKKPVDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLR 66
Query: 160 LE------DAGEYVCEAENAVGKISASATLTVQMA-------PIVRERPSDLRLEVGRDA 206
++ D Y C A+N G+++ A LTV P + P +E R A
Sbjct: 67 IQPLRTPRDENIYECVAQNPHGEVTVHAKLTVLREDQLPPGFPNIDMGPQLKVVERTRTA 126
Query: 207 VFLCGIEGSPPPSTFWMLE 225
LC G+P P W +
Sbjct: 127 TMLCAASGNPDPEITWFKD 145
>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin
pdb|2NZI|B Chain B, Crystal Structure Of Domains A168-A170 From Titin
Length = 305
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 77/335 (22%), Positives = 118/335 (35%), Gaps = 63/335 (18%)
Query: 187 MAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITS 246
MAP +E +L + +A +C + G P P W +G EI +
Sbjct: 3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGK---------------EIIA 47
Query: 247 DGMNLLKIQNVSRTAAPLIILCL-----------GVNAAGSDLARASLTVSGPDPNPPPV 295
DG+ +IQ LII + N GS ASL V P P
Sbjct: 48 DGLK-YRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPK 106
Query: 296 ILFGPANQTLPLRSEA---RLRCQVRGEGSVQWWRGEREVGSGPRVNVT---GDGSLVLT 349
L G LR E ++ + + + W +G+ + + V SLV
Sbjct: 107 TLEG-MGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFP 165
Query: 350 D-VTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVN 408
+ V ++D+G Y K+ G + L + + P PP + +
Sbjct: 166 NGVERKDAGFYVVCAKNRFGIDQKTVEL----------------DVADVPDPPRGVKVSD 209
Query: 409 QTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILT 468
+ + + L W+ G S + Y VE + T W+RV T
Sbjct: 210 VSRDSVNLTWTEPASDGGSKITNYIVEKCA-----------TTAERWLRVG-QARETRYT 257
Query: 469 VTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLR 503
V NL +Y F V A N GLS PS S+ + +
Sbjct: 258 VINLFGKTSYQFRVIAENKFGLSKPSEPSEPTITK 292
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 90/222 (40%), Gaps = 21/222 (9%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSK-RLRLVDGTNLAI 65
F+ + ++ V A L C GHP+P + W + G I + K R++ G +
Sbjct: 6 HFKEELRNLNVRYQSNATLVCKVT-GHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQL 64
Query: 66 QDSRKTDDGR--YQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDT----TVSA--SSII 117
+ TDD YQ N G+ T A L V V P I PK V A ++
Sbjct: 65 IIASVTDDDATVYQVRATNQGGSVSGT-ASLEVEV-PAKIHLPKTLEGMGAVHALRGEVV 122
Query: 118 VFECSVGGDAVLTVHWKRLGSAMPED-RMSVLPSRSLQL----SDVRLEDAGEYVCEAEN 172
+ G + W++ + + V+ +RS + V +DAG YV A+N
Sbjct: 123 SIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKN 182
Query: 173 AVGKISASATLTVQMAPIVRERPSDLRL-EVGRDAVFLCGIE 213
G + L V P + P +++ +V RD+V L E
Sbjct: 183 RFGIDQKTVELDVADVP---DPPRGVKVSDVSRDSVNLTWTE 221
>pdb|1X5H|A Chain A, The Solution Structure Of The Third Fibronectin Type Iii
Domain Of Human Neogenin
Length = 132
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
Query: 633 AVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINM 692
AVRTL PS PQ + N+ S+++ W+PP T NG I Y+I + + +
Sbjct: 10 AVRTLSDVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRKASRKSDVTE 69
Query: 693 T-VSASTPTLLLTNLSAGIRYSVSLAATNRAGTGP 726
T VS + + L+ L G Y+ +AA GTGP
Sbjct: 70 TLVSGTQLSQLIEGLDRGTEYNFRVAALTINGTGP 104
>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i
Length = 291
Score = 53.1 bits (126), Expect = 6e-07, Method: Composition-based stats.
Identities = 42/164 (25%), Positives = 68/164 (41%), Gaps = 15/164 (9%)
Query: 99 KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRL--------GSAMPEDRMSVLP- 149
+P+II+ +TT + + C G+ + + WKR G + R+ V
Sbjct: 1 QPHIIQLKNETTYENGQVTLV-CDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQ 59
Query: 150 --SRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAV 207
S SL + DV+L D+G Y CEA + +G S L ++ AP + G
Sbjct: 60 HGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPIN 119
Query: 208 FLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNL 251
C ++ +PP S W + L+ P N++ T M L
Sbjct: 120 ISCDVKSNPPASIHWRRD---KLVLPAKNTTNLKTYSTGRKMIL 160
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 44/183 (24%), Positives = 70/183 (38%), Gaps = 22/183 (12%)
Query: 10 VQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDF-ENSKRLRLVDG-------- 60
+Q K++ L C G P P + WK+ F E K L DG
Sbjct: 5 IQLKNETTYENGQVTLVCDA-EGEPIPEITWKRAVDGFTFTEGDKSL---DGRIEVKGQH 60
Query: 61 --TNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIV 118
++L I+D + +D GRY C + G + + L + P I + I
Sbjct: 61 GSSSLHIKDVKLSDSGRYDCEAASRIGGHQKS-MYLDIEYAPKFISNQTIYYSWEGNPIN 119
Query: 119 FECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRS------LQLSDVRLEDAGEYVCEAEN 172
C V + ++HW+R +P + L + S L+++ D G Y C A N
Sbjct: 120 ISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATN 179
Query: 173 AVG 175
+G
Sbjct: 180 HIG 182
>pdb|1VA9|A Chain A, Solution Structure Of The Second Fniii Domain Of Dscaml1
Protein
Length = 122
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 49/110 (44%), Gaps = 6/110 (5%)
Query: 636 TLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIV-----GGGNNSALI 690
T E P G P + + S+ + WK P NGVIR YQI G +++
Sbjct: 10 TEEAAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQYSIV 69
Query: 691 NMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPA-LLSLTSGP 739
M + + L NL +Y V + A NRAGTGP S +L SGP
Sbjct: 70 EMKATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSSEINATTLESGP 119
>pdb|1IE5|A Chain A, Nmr Structure Of The Third Immunoglobulin Domain From
The Neural Cell Adhesion Molecule
Length = 107
Score = 52.4 bits (124), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 38/61 (62%), Gaps = 2/61 (3%)
Query: 32 GHPEPTLVWKKNGHPIDFE-NSKRLRL-VDGTNLAIQDSRKTDDGRYQCVVKNVAGTRES 89
G PEPT+ W K+G PI+ E N ++ DG+ L I+ K+D+ Y C+ +N AG +++
Sbjct: 39 GFPEPTMTWTKDGEPIEQEDNEEKYSFNYDGSELIIKKVDKSDEAEYICIAENKAGEQDA 98
Query: 90 T 90
T
Sbjct: 99 T 99
Score = 30.0 bits (66), Expect = 6.4, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 5/83 (6%)
Query: 108 DTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMP----EDRMSV-LPSRSLQLSDVRLED 162
+ T + S + C G T+ W + G + E++ S L + V D
Sbjct: 22 NATANLSQSVTLACDADGFPEPTMTWTKDGEPIEQEDNEEKYSFNYDGSELIIKKVDKSD 81
Query: 163 AGEYVCEAENAVGKISASATLTV 185
EY+C AEN G+ A+ L V
Sbjct: 82 EAEYICIAENKAGEQDATIHLKV 104
>pdb|2EO9|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human
Roundabout Homo1
Length = 118
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 4/105 (3%)
Query: 100 PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLG--SAMPEDRMSVLPSRSLQLSD 157
P I +GP + TV+ V C G V T+ W++ G + + R+ L + LQ+
Sbjct: 9 PVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQIRY 68
Query: 158 VRLEDAGEYVCEAENAVGKISASATLTVQM--APIVRERPSDLRL 200
+L D G Y C A G+ + SA + VQ P+ RP+D L
Sbjct: 69 AKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVPVQPPRPTDPNL 113
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 12/106 (11%)
Query: 293 PPVILFGPANQTLPLRSEARLRCQVRGEG--SVQWWRGEREVGS-GPRVNVTGDGSLVLT 349
PPVI GP NQT+ + L C G ++ W + V + R+ +G L +
Sbjct: 8 PPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQIR 67
Query: 350 DVTKEDSGEYTCVVKSPHGSASWSASLRFES---------PTNPNI 386
D+G YTC+ +P G A+WSA + + PT+PN+
Sbjct: 68 YAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVPVQPPRPTDPNL 113
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQD 67
R P +Q VA T +L C G P PT++W+K+G + ++S+ +L +G L I+
Sbjct: 11 IRQGPVNQTVAVDGTFVLSCVA-TGSPVPTILWRKDGVLVSTQDSRIKQLENGV-LQIRY 68
Query: 68 SRKTDDGRYQCVVKNVAG 85
++ D GRY C+ +G
Sbjct: 69 AKLGDTGRYTCIASTPSG 86
>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3
pdb|2WIM|B Chain B, Crystal Structure Of Ncam2 Ig1-3
Length = 291
Score = 50.4 bits (119), Expect = 4e-06, Method: Composition-based stats.
Identities = 52/232 (22%), Positives = 85/232 (36%), Gaps = 19/232 (8%)
Query: 153 LQLSDVRLEDAGEYVCEAENAVGKIS-ASATLTVQMAPIVRERPSDLRLEVGRDAVFLCG 211
L + + +EDAG Y C+A +A G+ A+ L + RE S + G DA +C
Sbjct: 62 LTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCR 121
Query: 212 IEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLG- 270
+ SP P+ W+ +R + + + R C G
Sbjct: 122 VSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYR--------CEGR 173
Query: 271 VNAAGSDLARASLTVSGPDPNPPPVILFGPA--NQTLPLRSEARLRCQVRG--EGSVQWW 326
V A G R + + N PP I N T E C+ G E ++ W+
Sbjct: 174 VEARGEIDFRDIIVIV----NVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWF 229
Query: 327 RGEREVGSGPRVNVTGDGS-LVLTDVTKEDSGEYTCVVKSPHGSASWSASLR 377
R + + + + G + L + ++ D G Y C + G A L+
Sbjct: 230 RNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQ 281
Score = 49.3 bits (116), Expect = 1e-05, Method: Composition-based stats.
Identities = 47/183 (25%), Positives = 75/183 (40%), Gaps = 6/183 (3%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQD 67
FR Q G+ A + C P P + W + + + R ++ NL I +
Sbjct: 101 FREVVSPQEFKQGEDAEVVC-RVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILN 159
Query: 68 SRKTDDGRYQCVVKNVA-GTRESTDAVLRVLVKPYIIRGPK--DTTVSASSIIVFECSVG 124
K+D+G Y+C + A G + D ++ V V P I K + T + F C
Sbjct: 160 INKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRAS 219
Query: 125 GDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLS--DVRLEDAGEYVCEAENAVGKISASAT 182
G + W R G + E+ +L + +L+ ++ D G YVC A N G+ A
Sbjct: 220 GSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAF 279
Query: 183 LTV 185
L V
Sbjct: 280 LQV 282
>pdb|2EDX|A Chain A, Solution Structures Of The Fn3 Domain Of Human Receptor-
Type Tyrosine-Protein Phosphatase F
Length = 134
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 52/117 (44%), Gaps = 7/117 (5%)
Query: 635 RTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQI---IVGGGNNSALIN 691
RT + PS PQ V + +T+V + W PPP + NGVI Y + V G + +
Sbjct: 12 RTAQSTPSAPPQKVMCVSMGSTTVRVSWVPPPADSRNGVITQYSVAYEAVDGEDRGRHVV 71
Query: 692 MTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALL----SLTSGPEPRLE 744
+S + L L Y V + A G GP S P L+ + SGP ++E
Sbjct: 72 DGISREHSSWDLVGLEKWTEYRVWVRAHTDVGPGPESSPVLVRTDEDVPSGPPRKVE 128
>pdb|1EPF|A Chain A, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|B Chain B, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|C Chain C, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|D Chain D, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
Length = 191
Score = 49.3 bits (116), Expect = 1e-05, Method: Composition-based stats.
Identities = 39/169 (23%), Positives = 65/169 (38%), Gaps = 9/169 (5%)
Query: 10 VQPKSQRVAAGDTALLECGPPRGHPEPTLVW-KKNGHPIDFENSKRLRLV----DGTNLA 64
+ P ++ G++ C + + W NG + N +R+ +V D + L
Sbjct: 7 IVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLS-PNQQRISVVWNDDDSSTLT 65
Query: 65 IQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVG 124
I ++ D G Y+CVV GT+ +++ K P V C V
Sbjct: 66 IYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVV 125
Query: 125 GDAVLTVHWKRLGSAM---PEDRMSVLPSRSLQLSDVRLEDAGEYVCEA 170
T+ WK G + + R VL + LQ+ ++ D G Y CE
Sbjct: 126 SSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEG 174
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 42/166 (25%), Positives = 74/166 (44%), Gaps = 20/166 (12%)
Query: 106 PKDTTVSASSIIVFECSVGGDAV-LTVHW-----KRLGSAMPEDRMSVL----PSRSLQL 155
P +S F C V GDA + W ++L + R+SV+ S +L +
Sbjct: 9 PSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPN--QQRISVVWNDDDSSTLTI 66
Query: 156 SDVRLEDAGEYVCEAENAVGKIS-ASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEG 214
+ ++DAG Y C G S A+ + + + + P+ + G DAV +C +
Sbjct: 67 YNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVS 126
Query: 215 SPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRT 260
S PP+ W +G R +I D ++ + S+ N L+I+ + +T
Sbjct: 127 SLPPTIIWKHKG-RDVILKKD----VRFIVLSN--NYLQIRGIKKT 165
Score = 44.7 bits (104), Expect = 3e-04, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQD 67
F+ P Q G+ A++ C P PT++WK G + + R ++ L I+
Sbjct: 103 FKNAPTPQEFKEGEDAVIVCDVVSSLP-PTIIWKHKGRDVILKKDVRFIVLSNNYLQIRG 161
Query: 68 SRKTDDGRYQC 78
+KTD+G Y+C
Sbjct: 162 IKKTDEGTYRC 172
>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3
Length = 189
Score = 48.5 bits (114), Expect = 2e-05, Method: Composition-based stats.
Identities = 47/183 (25%), Positives = 75/183 (40%), Gaps = 6/183 (3%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQD 67
FR Q G+ A + C P P + W + + + R ++ NL I +
Sbjct: 5 FREVVSPQEFKQGEDAEVVC-RVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILN 63
Query: 68 SRKTDDGRYQCVVKNVA-GTRESTDAVLRVLVKPYIIRGPK--DTTVSASSIIVFECSVG 124
K+D+G Y+C + A G + D ++ V V P I K + T + F C
Sbjct: 64 INKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRAS 123
Query: 125 GDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLS--DVRLEDAGEYVCEAENAVGKISASAT 182
G + W R G + E+ +L + +L+ ++ D G YVC A N G+ A
Sbjct: 124 GSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAF 183
Query: 183 LTV 185
L V
Sbjct: 184 LQV 186
Score = 33.1 bits (74), Expect = 0.76, Method: Composition-based stats.
Identities = 40/192 (20%), Positives = 65/192 (33%), Gaps = 18/192 (9%)
Query: 192 RERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNL 251
RE S + G DA +C + SP P+ W+ +R +
Sbjct: 6 REVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNIN 65
Query: 252 LKIQNVSRTAAPLIILCLG-VNAAGSDLARASLTVSGPDPNPPPVILFGPA--NQTLPLR 308
+ + R C G V A G R + + N PP I N T
Sbjct: 66 KSDEGIYR--------CEGRVEARGEIDFRDIIVIV----NVPPAISMPQKSFNATAERG 113
Query: 309 SEARLRCQVRG--EGSVQWWRGEREVGSGPRVNVTGDGS-LVLTDVTKEDSGEYTCVVKS 365
E C+ G E ++ W+R + + + + G + L + ++ D G Y C +
Sbjct: 114 EEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATN 173
Query: 366 PHGSASWSASLR 377
G A L+
Sbjct: 174 KAGEDEKQAFLQ 185
>pdb|2ED9|A Chain A, Solution Structure Of The Third Fibronectin Type Iii
Domain Of Human Netrin Receptor Dcc
Length = 124
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
Query: 633 AVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINM 692
V TL PS PQ ++N+ S+ + W PPP GT NG I Y+I +
Sbjct: 20 TVVTLSDVPSAPPQNVSLEVVNSRSIKVSWLPPPSGTQNGFITGYKIRHRKTTRRGEME- 78
Query: 693 TVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGP 726
T+ + L T L G +YS ++A GTGP
Sbjct: 79 TLEPNNLWYLFTGLEKGSQYSFQVSAMTVNGTGP 112
>pdb|3PUC|A Chain A, Atomic Resolution Structure Of Titin Domain M7
Length = 99
Score = 47.0 bits (110), Expect = 6e-05, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 4/92 (4%)
Query: 99 KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRS----LQ 154
KP I+ G +DTTVS+ S+ F G+ T W + G A+ + L L+
Sbjct: 6 KPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLE 65
Query: 155 LSDVRLEDAGEYVCEAENAVGKISASATLTVQ 186
+ D+G Y C +N+ G +S+S LT++
Sbjct: 66 IHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIK 97
Score = 37.4 bits (85), Expect = 0.044, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 32 GHPEPTLVWKKNGHPIDFENSKRLRLVDGTN-LAIQDSRKTDDGRYQCVVKNVAGTREST 90
G P PT +W K+G I +L G L I + +D G Y C VKN AG+ S+
Sbjct: 32 GEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSS 91
Score = 34.7 bits (78), Expect = 0.28, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 5/92 (5%)
Query: 294 PVILFGPANQTLPLRSEARLRCQVRGEG--SVQWWRGEREVGSGPRVNVTGDGSLVLTDV 351
PVI+ G + T+ S A+ + GE + W + + + G + ++ D ++
Sbjct: 7 PVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEI 66
Query: 352 TK---EDSGEYTCVVKSPHGSASWSASLRFES 380
K DSG YTC VK+ GS S S L ++
Sbjct: 67 HKTDTSDSGLYTCTVKNSAGSVSSSCKLTIKA 98
>pdb|1E07|A Chain A, Model Of Human Carcinoembryonic Antigen By Homology
Modelling And Curve-Fitting To Experimental Solution
Scattering Data
Length = 642
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 84/387 (21%), Positives = 147/387 (37%), Gaps = 78/387 (20%)
Query: 7 EFRVQPK----------SQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLR 56
+FRV P+ S+ V D C P + T +W N + S RL+
Sbjct: 103 QFRVYPELPKPSISSNNSKPVEDKDAVAFTCEPETQ--DATYLWWVNNQSLPV--SPRLQ 158
Query: 57 LVDGT-NLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYI-IRGPKDTTVSAS 114
L +G L + + + D Y+C +N R S +L VL P P +T+ +
Sbjct: 159 LSNGNRTLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRSG 218
Query: 115 SIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAV 174
+ C + W G+ + +P ++ + ++G Y C+A N+
Sbjct: 219 ENLNLSCHAASNPPAQYSWFVNGTFQQSTQELFIP-------NITVNNSGSYTCQAHNSD 271
Query: 175 GKISASATLTVQM-----APIVRERPSDLRLEVGRDAVFL-CGIEGSPPPSTFWMLEGNR 228
++ + T+ + P + S+ + DAV L C E +W+ N+
Sbjct: 272 TGLNRTTVTTITVYAEPPKPFITSNNSNPVED--EDAVALTCEPEIQNTTYLWWV--NNQ 327
Query: 229 SL-IYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLA--RASLTV 285
SL + P L++ N +RT L +L + N G + L+V
Sbjct: 328 SLPVSPR-----------------LQLSNDNRT---LTLLSVTRNDVGPYECGIQNELSV 367
Query: 286 SGPDPNPPPVI---LFGPANQTL-PLRSEAR------LRCQVRGEGSVQW-WRGEREVGS 334
D PVI L+GP + T+ P + R L C Q+ W + +
Sbjct: 368 DHSD----PVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQ 423
Query: 335 GPRVNVTGDGSLVLTDVTKEDSGEYTC 361
+ L ++++T+++SG YTC
Sbjct: 424 HTQ-------ELFISNITEKNSGLYTC 443
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 79/369 (21%), Positives = 132/369 (35%), Gaps = 48/369 (13%)
Query: 10 VQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSR 69
+ P + +G+ L C +P W NG F+ S + + N+ + +S
Sbjct: 208 ISPLNTSYRSGENLNLSCHA-ASNPPAQYSWFVNG---TFQQSTQELFI--PNITVNNS- 260
Query: 70 KTDDGRYQCVVKNV-AGTRESTDAVLRVLV---KPYIIRGPKDTTVSASSIIVFECSVGG 125
G Y C N G +T + V KP+I V + C
Sbjct: 261 ----GSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSN-NSNPVEDEDAVALTCEPEI 315
Query: 126 DAVLTVHWKRLGSAMPEDRMSVL-PSRSLQLSDVRLEDAGEYVCEAENAVG-KISASATL 183
+ W S R+ + +R+L L V D G Y C +N + S L
Sbjct: 316 QNTTYLWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVIL 375
Query: 184 TVQMAPIVRE-RPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQA 242
V P PS G + C +PP W+++GN IQ
Sbjct: 376 NVLYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGN------------IQQ 423
Query: 243 EITSDGMNLLKIQNVSRTAAPLIILCLGVNAAG--SDLARASLTVSGPDPNPPPVILFGP 300
L I N++ + L C N+A S ++TVS P P
Sbjct: 424 HTQE-----LFISNITEKNSGLYT-CQANNSASGHSRTTVKTITVSAELPKPS-----IS 472
Query: 301 ANQTLPL--RSEARLRCQVRGEGSVQ-WWRGEREVGSGPRVNVT-GDGSLVLTDVTKEDS 356
+N + P+ + C+ + + WW + + PR+ ++ G+ +L L +VT+ D+
Sbjct: 473 SNNSKPVEDKDAVAFTCEPEAQNTTYLWWVNGQSLPVSPRLQLSNGNRTLTLFNVTRNDA 532
Query: 357 GEYTCVVKS 365
Y C +++
Sbjct: 533 RAYVCGIQN 541
Score = 36.6 bits (83), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 66/186 (35%), Gaps = 20/186 (10%)
Query: 57 LVDGT------NLAIQDSRKTDDGRYQCVVKNVAG----TRESTDAVLRVLVKPYIIRGP 106
L+DG L I + + + G Y C N A T T V L KP I
Sbjct: 416 LIDGNIQQHTQELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSN- 474
Query: 107 KDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPS--RSLQLSDVRLEDAG 164
V + F C + W G ++P L + R+L L +V DA
Sbjct: 475 NSKPVEDKDAVAFTCEPEAQNTTYLWWVN-GQSLPVSPRLQLSNGNRTLTLFNVTRNDAR 533
Query: 165 EYVCEAENAV-GKISASATLTVQM---APIVRERPSDLRLEVGRDAVFLCGIEGSPPPST 220
YVC +N+V S TL V PI+ P D G + C +P P
Sbjct: 534 AYVCGIQNSVSANRSDPVTLDVLYGPDTPII--SPPDSSYLSGANLNLSCHSASNPSPQY 591
Query: 221 FWMLEG 226
W + G
Sbjct: 592 SWRING 597
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 320 EGSVQWWRGEREVGSGPRVNVT-GDGSLVLTDVTKEDSGEYTCVVKSP 366
+ + WW + + PR+ ++ G+ +L L +VT+ D+ Y C ++P
Sbjct: 139 DATYLWWVNNQSLPVSPRLQLSNGNRTLTLFNVTRNDTASYKCETQNP 186
>pdb|2DL9|A Chain A, Solution Structure Of The Ig-Like Domain Of Human Leucine-
Rich Repeat-Containing Protein 4
Length = 103
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 41/95 (43%), Gaps = 7/95 (7%)
Query: 100 PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHW-----KRLGSAMPEDRMSVLPSRSLQ 154
P+I+ P+D +S + +C + +V W L A R+SVL +L
Sbjct: 8 PFIMDAPRDLNISEGRMAELKCRT--PPMSSVKWLLPNGTVLSHASRHPRISVLNDGTLN 65
Query: 155 LSDVRLEDAGEYVCEAENAVGKISASATLTVQMAP 189
S V L D G Y C N G +ASA L V P
Sbjct: 66 FSHVLLSDTGVYTCMVTNVAGNSNASAYLNVSSGP 100
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
Query: 294 PVILFGPANQTLPLRSEARLRCQVRGEGSVQWWRGEREVGSG----PRVNVTGDGSLVLT 349
P I+ P + + A L+C+ SV+W V S PR++V DG+L +
Sbjct: 8 PFIMDAPRDLNISEGRMAELKCRTPPMSSVKWLLPNGTVLSHASRHPRISVLNDGTLNFS 67
Query: 350 DVTKEDSGEYTCVVKSPHGSASWSASLRFES 380
V D+G YTC+V + G+++ SA L S
Sbjct: 68 HVLLSDTGVYTCMVTNVAGNSNASAYLNVSS 98
>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|B Chain B, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|C Chain C, Crystal Structure Of The N-Terminus Of Titin
Length = 194
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 82/190 (43%), Gaps = 19/190 (10%)
Query: 11 QP-KSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFEN--SKRLRLVDG-TNLAIQ 66
QP +S V G TA E G P P + W ++G I ++ DG L I
Sbjct: 10 QPLQSVVVLEGSTATFEAHI-SGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIP 68
Query: 67 DSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVK-----PYIIRGPKDTTVSASSIIVFEC 121
K + GRY N +G ST +LVK P ++ + TV S + +
Sbjct: 69 AVTKANSGRYSLKATNGSGQATST---AELLVKAETAPPNFVQRLQSMTVRQGSQVRLQV 125
Query: 122 SVGGDAVLTVHWKRLGSAMPEDRMSVLPSR-----SLQLSDVRLEDAGEYVCEAENAVGK 176
V G V + R G+ + + + S+ SL +++ ED+G Y A N+VG+
Sbjct: 126 RVTGIPTPVVKFYRDGAEI-QSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGR 184
Query: 177 ISASATLTVQ 186
+++A L VQ
Sbjct: 185 ATSTAELLVQ 194
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 79/183 (43%), Gaps = 20/183 (10%)
Query: 203 GRDAVFLCGIEGSPPPSTFWMLEGN--RSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRT 260
G A F I G P P W +G + PG ++ SDG L I V++
Sbjct: 20 GSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQIS------FSDGRAKLTIPAVTKA 73
Query: 261 AAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRGE 320
+ L N +G + A L V + PP F Q++ +R +++R QVR
Sbjct: 74 NSGRYSLK-ATNGSGQATSTAELLVKA-ETAPPN---FVQRLQSMTVRQGSQVRLQVRVT 128
Query: 321 G----SVQWWRGEREVGSGPRVNVTGDG---SLVLTDVTKEDSGEYTCVVKSPHGSASWS 373
G V+++R E+ S ++ +G SL++ + EDSG Y+ + G A+ +
Sbjct: 129 GIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATST 188
Query: 374 ASL 376
A L
Sbjct: 189 AEL 191
>pdb|2YR3|A Chain A, Solution Structure Of The Fourth Ig-Like Domain From
Myosin Light Chain Kinase, Smooth Muscle
Length = 99
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Query: 107 KDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRS-LQLSDVRLEDAGE 165
KD V V +CSV G V + W G + R + + L + D ED G
Sbjct: 19 KDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEAGVAELHIQDALPEDHGT 78
Query: 166 YVCEAENAVGKISASATLTVQ 186
Y C AENA+G++S SA +TV
Sbjct: 79 YTCLAENALGQVSCSAWVTVH 99
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Query: 13 KSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTD 72
K V G +L+C RG P P + W NG PI + S V L IQD+ D
Sbjct: 19 KDCAVIEGQDFVLQCSV-RGTPVPRITWLLNGQPIQYARSTCEAGV--AELHIQDALPED 75
Query: 73 DGRYQCVVKNVAG 85
G Y C+ +N G
Sbjct: 76 HGTYTCLAENALG 88
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 185 VQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGN 227
+++AP D + G+D V C + G+P P W+L G
Sbjct: 8 MEVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQ 50
>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|1YA5|B Chain B, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|2F8V|A Chain A, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|B Chain B, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|C Chain C, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|D Chain D, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
Length = 201
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 82/190 (43%), Gaps = 19/190 (10%)
Query: 11 QP-KSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFEN--SKRLRLVDG-TNLAIQ 66
QP +S V G TA E G P P + W ++G I ++ DG L I
Sbjct: 10 QPLQSVVVLEGSTATFEAHI-SGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIP 68
Query: 67 DSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVK-----PYIIRGPKDTTVSASSIIVFEC 121
K + GRY N +G ST +LVK P ++ + TV S + +
Sbjct: 69 AVTKANSGRYSLKATNGSGQATST---AELLVKAETAPPNFVQRLQSMTVRQGSQVRLQV 125
Query: 122 SVGGDAVLTVHWKRLGSAMPEDRMSVLPSR-----SLQLSDVRLEDAGEYVCEAENAVGK 176
V G V + R G+ + + + S+ SL +++ ED+G Y A N+VG+
Sbjct: 126 RVTGIPTPVVKFYRDGAEI-QSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGR 184
Query: 177 ISASATLTVQ 186
+++A L VQ
Sbjct: 185 ATSTAELLVQ 194
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 81/189 (42%), Gaps = 20/189 (10%)
Query: 203 GRDAVFLCGIEGSPPPSTFWMLEGN--RSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRT 260
G A F I G P P W +G + PG ++ SDG L I V++
Sbjct: 20 GSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISF------SDGRAKLTIPAVTKA 73
Query: 261 AAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRGE 320
+ L N +G + A L V + PP F Q++ +R +++R QVR
Sbjct: 74 NSGRYSLK-ATNGSGQATSTAELLVKA-ETAPPN---FVQRLQSMTVRQGSQVRLQVRVT 128
Query: 321 G----SVQWWRGEREVGSGPRVNVTGDG---SLVLTDVTKEDSGEYTCVVKSPHGSASWS 373
G V+++R E+ S ++ +G SL++ + EDSG Y+ + G A+ +
Sbjct: 129 GIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATST 188
Query: 374 ASLRFESPT 382
A L + T
Sbjct: 189 AELLVQGET 197
>pdb|2C5D|C Chain C, Structure Of A Minimal Gas6-Axl Complex
pdb|2C5D|D Chain D, Structure Of A Minimal Gas6-Axl Complex
Length = 195
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 80/182 (43%), Gaps = 19/182 (10%)
Query: 18 AAGDTALLECG-PPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG----------TNLAIQ 66
A G T L C +G P P + W ++G ++ +S + ++ G + L I
Sbjct: 15 ARGLTGTLRCQLQVQGEP-PEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRIT 73
Query: 67 DSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGG- 125
+ +D G+YQC+V T S + + PY + P+D TV+A++ C G
Sbjct: 74 SLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAANTPFNLSCQAQGP 133
Query: 126 DAVLTVHWKRLGSAMP-EDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVG-KISASATL 183
+ + W L A+P P RSL + L + CEA NA G S +AT+
Sbjct: 134 PEPVDLLW--LQDAVPLATAPGHGPQRSLHVPG--LNKTSSFSCEAHNAKGVTTSRTATI 189
Query: 184 TV 185
TV
Sbjct: 190 TV 191
>pdb|2XY2|A Chain A, Crystal Structure Of Ncam2 Ig1-2
Length = 189
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 153 LQLSDVRLEDAGEYVCEAENAVGKIS-ASATLTVQMAPIVRERPSDLRLEVGRDAVFLCG 211
L + + +EDAG Y C+A +A G+ A+ L + RE S + G DA +C
Sbjct: 60 LTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCR 119
Query: 212 IEGSPPPSTFWM 223
+ SP P+ W+
Sbjct: 120 VSSSPAPAVSWL 131
>pdb|2KKQ|A Chain A, Solution Nmr Structure Of The Ig-Like C2-Type 2 Domain Of
Human Myotilin. Northeast Structural Genomics Target
Hr3158
Length = 116
Score = 44.7 bits (104), Expect = 3e-04, Method: Composition-based stats.
Identities = 34/97 (35%), Positives = 47/97 (48%), Gaps = 7/97 (7%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV-DGT---NL 63
F +P+S++V GD+ LEC P P L WK+N + F N+ R+ L D T L
Sbjct: 18 FIYKPQSKKVLEGDSVKLEC-QISAIPPPKLFWKRNNEMVQF-NTDRISLYQDNTGRVTL 75
Query: 64 AIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKP 100
I+D K D G Y N AG + + L V +P
Sbjct: 76 LIKDVNKKDAGWYTVSAVNEAGV-TTCNTRLDVTARP 111
Score = 30.8 bits (68), Expect = 3.7, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 45/119 (37%), Gaps = 17/119 (14%)
Query: 188 APIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSD 247
AP+ +P ++ G C I PPP FW N + + DR+ Q +
Sbjct: 15 APMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWK-RNNEMVQFNTDRISLYQ---DNT 70
Query: 248 GMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLP 306
G L I++V++ A + VN AG L V+ NQTLP
Sbjct: 71 GRVTLLIKDVNKKDAGWYTVS-AVNEAGVTTCNTRLDVT------------ARPNQTLP 116
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 6/91 (6%)
Query: 100 PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKR-LGSAMPED----RMSVLPSRSLQ 154
P I+ P D V+ +C G ++ +V+W G+ M R+SVL +L
Sbjct: 313 PVIVEPPTDLNVTEGMAAELKCRTGT-SMTSVNWLTPNGTLMTHGSYRVRISVLHDGTLN 371
Query: 155 LSDVRLEDAGEYVCEAENAVGKISASATLTV 185
++V ++D G+Y C N+ G +ASATL V
Sbjct: 372 FTNVTVQDTGQYTCMVTNSAGNTTASATLNV 402
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 13/92 (14%)
Query: 294 PVILFGPANQTLPLRSEARLRCQV-RGEGSVQWW--------RGEREVGSGPRVNVTGDG 344
PVI+ P + + A L+C+ SV W G V R++V DG
Sbjct: 313 PVIVEPPTDLNVTEGMAAELKCRTGTSMTSVNWLTPNGTLMTHGSYRV----RISVLHDG 368
Query: 345 SLVLTDVTKEDSGEYTCVVKSPHGSASWSASL 376
+L T+VT +D+G+YTC+V + G+ + SA+L
Sbjct: 369 TLNFTNVTVQDTGQYTCMVTNSAGNTTASATL 400
>pdb|3NCM|A Chain A, Neural Cell Adhesion Molecule, Module 2, Nmr, 20
Structures
Length = 92
Score = 44.7 bits (104), Expect = 3e-04, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQD 67
F+ P Q G+ A++ C P PT++WK G + + R ++ L I+
Sbjct: 4 FKNAPTPQEFKEGEDAVIVCDVVSSLP-PTIIWKHKGRDVILKKDVRFIVLSNNYLQIRG 62
Query: 68 SRKTDDGRYQC 78
+KTD+G Y+C
Sbjct: 63 IKKTDEGTYRC 73
Score = 31.2 bits (69), Expect = 2.7, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 7/71 (9%)
Query: 190 IVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGM 249
+ + P+ + G DAV +C + S PP+ W +G R +I D ++ + S+
Sbjct: 3 MFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKG-RDVILKKD----VRFIVLSN-- 55
Query: 250 NLLKIQNVSRT 260
N L+I+ + +T
Sbjct: 56 NYLQIRGIKKT 66
>pdb|1TNM|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
pdb|1TNN|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
Length = 100
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Query: 102 IIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED-RMSVLPSR---SLQLSD 157
I+ P+ TV F C G+ V TV W R G + R V ++ + ++S
Sbjct: 11 ILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISS 70
Query: 158 VRLEDAGEYVCEAENAVGKISASATLTVQ 186
V+ D G Y EN+ GK A TLT+Q
Sbjct: 71 VQASDEGNYSVVVENSEGKQEAEFTLTIQ 99
Score = 37.7 bits (86), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
Query: 11 QPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD---GTNLAIQD 67
+P+S V G++A C G P PT+ W + G + S R ++ + I
Sbjct: 14 KPRSMTVYEGESARFSCDTD-GEPVPTVTWLRKGQVLS--TSARHQVTTTKYKSTFEISS 70
Query: 68 SRKTDDGRYQCVVKNVAGTRES 89
+ +D+G Y VV+N G +E+
Sbjct: 71 VQASDEGNYSVVVENSEGKQEA 92
>pdb|1NCT|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
pdb|1NCU|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
Length = 106
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Query: 102 IIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED-RMSVLPSR---SLQLSD 157
I+ P+ TV F C G+ V TV W R G + R V ++ + ++S
Sbjct: 17 ILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISS 76
Query: 158 VRLEDAGEYVCEAENAVGKISASATLTVQ 186
V+ D G Y EN+ GK A TLT+Q
Sbjct: 77 VQASDEGNYSVVVENSEGKQEAEFTLTIQ 105
Score = 37.7 bits (86), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Query: 11 QPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD-GTNLAIQDSR 69
+P+S V G++A C G P PT+ W + G + ++ + I +
Sbjct: 20 KPRSMTVYEGESARFSCDTD-GEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQ 78
Query: 70 KTDDGRYQCVVKNVAGTRES 89
+D+G Y VV+N G +E+
Sbjct: 79 ASDEGNYSVVVENSEGKQEA 98
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 41/94 (43%), Gaps = 7/94 (7%)
Query: 100 PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHW-----KRLGSAMPEDRMSVLPSRSLQ 154
P+I+ P+D +S + +C + +V W L A R+SVL +L
Sbjct: 353 PFIMDAPRDLNISEGRMAELKCRT--PPMSSVKWLLPNGTVLSHASRHPRISVLNDGTLN 410
Query: 155 LSDVRLEDAGEYVCEAENAVGKISASATLTVQMA 188
S V L D G Y C N G +ASA L V A
Sbjct: 411 FSHVLLSDTGVYTCMVTNVAGNSNASAYLNVSTA 444
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Query: 294 PVILFGPANQTLPLRSEARLRCQVRGEGSVQWWRGEREVGSG----PRVNVTGDGSLVLT 349
P I+ P + + A L+C+ SV+W V S PR++V DG+L +
Sbjct: 353 PFIMDAPRDLNISEGRMAELKCRTPPMSSVKWLLPNGTVLSHASRHPRISVLNDGTLNFS 412
Query: 350 DVTKEDSGEYTCVVKSPHGSASWSASL 376
V D+G YTC+V + G+++ SA L
Sbjct: 413 HVLLSDTGVYTCMVTNVAGNSNASAYL 439
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 51/123 (41%), Gaps = 17/123 (13%)
Query: 164 GEYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWM 223
G Y+ E + A + SA P + + P DL + GR A C +PP S+
Sbjct: 337 GRYLVEVDQASFQCSA---------PFIMDAPRDLNISEGRMAELKC---RTPPMSSVKW 384
Query: 224 LEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASL 283
L N +++ R I + +DG +S T + C+ N AG+ A A L
Sbjct: 385 LLPNGTVLSHASRHPRI--SVLNDGTLNFSHVLLSDTG---VYTCMVTNVAGNSNASAYL 439
Query: 284 TVS 286
VS
Sbjct: 440 NVS 442
>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure
Length = 772
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 66/155 (42%), Gaps = 11/155 (7%)
Query: 39 VWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKN-VAGTRESTDAVLRVL 97
+WK N F NS L+ + ++++ D G Y C+ ++ R L VL
Sbjct: 609 LWKLNA--TMFSNSTNDILI----MELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVL 662
Query: 98 --VKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLP--SRSL 153
V P I ++ T S I C+ G+ + W + + ED VL +R+L
Sbjct: 663 ERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNL 722
Query: 154 QLSDVRLEDAGEYVCEAENAVGKISASATLTVQMA 188
+ VR ED G Y C+A + +G A ++ A
Sbjct: 723 TIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGA 757
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 85/408 (20%), Positives = 151/408 (37%), Gaps = 68/408 (16%)
Query: 32 GHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKN-VAGTREST 90
G+P P + W KNG P++ ++ + G L I + + D G Y ++ N ++ ++S
Sbjct: 356 GYPPPEIKWYKNGIPLESNHTIKA----GHVLTIMEVSERDTGNYTVILTNPISKEKQSH 411
Query: 91 DAVLRVLVKPYI----IRGPKDT----TVSASSIIVF----------------ECSVGGD 126
L V V P I + P D+ T + V+ EC+
Sbjct: 412 VVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPS 471
Query: 127 AVLTV-------HWKRLGS-------AMPEDRMSVLPSRSLQLSDVRLEDAGE---YVCE 169
++V W+ + + +++ +++ ++ +S + ++ A Y CE
Sbjct: 472 QAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCE 531
Query: 170 AENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRS 229
A N VG+ + V P + +P D++ C + S + W G +
Sbjct: 532 AVNKVGRGERVISFHVTRGPEITLQP-DMQPTEQESVSLWCTADRSTFENLTWYKLGPQP 590
Query: 230 L-IYPG----------DRVDNIQAEITSDGMN---LLKIQNVS-RTAAPLIILCLGVNAA 274
L I+ G D + + A + S+ N +++++N S + + L
Sbjct: 591 LPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTK 650
Query: 275 GSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRGEG--SVQWWR-GERE 331
LTV P I NQT + + C G + W++ E
Sbjct: 651 KRHCVVRQLTVL---ERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETL 707
Query: 332 VGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFE 379
V V G+ +L + V KED G YTC S G A A E
Sbjct: 708 VEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIE 755
Score = 30.0 bits (66), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 44/104 (42%), Gaps = 16/104 (15%)
Query: 267 LCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRGEGSVQWW 326
LC+ AA L SL + P + IL AN TL ++ C RG+ + W
Sbjct: 13 LCVETRAASVGLPSVSLDL--PRLSIQKDILTIKANTTL------QITC--RGQRDLDWL 62
Query: 327 RGEREVGSGPRVNVT--GDG----SLVLTDVTKEDSGEYTCVVK 364
+ GS RV VT DG +L + V D+G Y C +
Sbjct: 63 WPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYR 106
>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165
pdb|3LCY|B Chain B, Titin Ig Tandem Domains A164-A165
pdb|3LCY|C Chain C, Titin Ig Tandem Domains A164-A165
pdb|3LCY|D Chain D, Titin Ig Tandem Domains A164-A165
Length = 197
Score = 43.5 bits (101), Expect = 5e-04, Method: Composition-based stats.
Identities = 46/175 (26%), Positives = 72/175 (41%), Gaps = 29/175 (16%)
Query: 100 PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPS----RSLQL 155
P I + KD T C + G + + W R G + + R + S +L +
Sbjct: 8 PGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTV 67
Query: 156 SDVRLEDAGEYVCEAENAVGKISASATLTVQMAP------IVRER-----PSDLRLEVGR 204
ED G Y C A N VG++ S+ L +Q P ++E+ S LRL V
Sbjct: 68 MTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHV-- 125
Query: 205 DAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSR 259
+++ G P P+ W G + L +NI E T +L+ ++NV R
Sbjct: 126 --MYI----GRPVPAMTW-FHGQKLL----QNSENITIENTEHYTHLV-MKNVQR 168
Score = 40.4 bits (93), Expect = 0.005, Method: Composition-based stats.
Identities = 29/118 (24%), Positives = 49/118 (41%), Gaps = 17/118 (14%)
Query: 304 TLPLRSEARLRCQVRGEG--SVQWWRGEREVGSGPRVNVTGDG---SLVLTDVTKEDSGE 358
T L A+L CQ+ G ++W+R +E+ + ++ DG +L + +ED G
Sbjct: 18 TTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGV 77
Query: 359 YTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGLTL 416
YTC+ + G S+ L ++ P +PG P K + L L
Sbjct: 78 YTCIATNEVGEVETSSKLLLQA------------TPQFHPGYPLKEKYYGAVGSTLRL 123
Score = 31.6 bits (70), Expect = 2.6, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 15/75 (20%)
Query: 32 GHPEPTLVW------KKNGHPIDFENSKRLRLVDGTNLAIQD-SRKTDDGRYQCVVKNVA 84
G P P + W +N I EN++ T+L +++ RKT G+Y+ + NV
Sbjct: 129 GRPVPAMTWFHGQKLLQNSENITIENTEHY-----THLVMKNVQRKTHAGKYKVQLSNVF 183
Query: 85 GTRESTDAVLRVLVK 99
GT DA+L V ++
Sbjct: 184 GT---VDAILDVEIQ 195
Score = 31.2 bits (69), Expect = 2.9, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 4/88 (4%)
Query: 9 RVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN--LAIQ 66
R + K G+ A L C G P P + W + G + ++ K DG L +
Sbjct: 11 RKEMKDVTTKLGEAAQLSC-QIVGRPLPDIKWYRFGKEL-IQSRKYKMSSDGRTHTLTVM 68
Query: 67 DSRKTDDGRYQCVVKNVAGTRESTDAVL 94
+ D+G Y C+ N G E++ +L
Sbjct: 69 TEEQEDEGVYTCIATNEVGEVETSSKLL 96
>pdb|1RHF|A Chain A, Crystal Structure Of Human Tyro3-D1d2
pdb|1RHF|B Chain B, Crystal Structure Of Human Tyro3-D1d2
Length = 182
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 76/186 (40%), Gaps = 23/186 (12%)
Query: 12 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN-----LAIQ 66
P V+ G L C G EP + W K+G + +N +L + L+++
Sbjct: 9 PVKLTVSQGQPVKLNCSV-EGXEEPDIQWVKDGAVV--QNLDQLYIPVSEQHWIGFLSLK 65
Query: 67 DSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGG- 125
++D GRY C V++ T S L V P+ PKD V ++ C G
Sbjct: 66 SVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCEAVGP 125
Query: 126 -DAVLTVHWK---RLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASA 181
+ V V W+ ++G P + L+ + + + CEA N G +++S
Sbjct: 126 PEPVTIVWWRGTTKIGGPAPSPSV---------LNVTGVTQSTXFSCEAHNLKG-LASSR 175
Query: 182 TLTVQM 187
T TV +
Sbjct: 176 TATVHL 181
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 50/127 (39%), Gaps = 7/127 (5%)
Query: 102 IIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPE-DRMSVLPSRS-----LQL 155
++ P TVS + CSV G + W + G+ + D++ + S L L
Sbjct: 5 LMGAPVKLTVSQGQPVKLNCSVEGXEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSL 64
Query: 156 SDVRLEDAGEYVCEAENA-VGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEG 214
V DAG Y C+ E+ +IS LTV+ P P DL + C G
Sbjct: 65 KSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCEAVG 124
Query: 215 SPPPSTF 221
P P T
Sbjct: 125 PPEPVTI 131
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 66/158 (41%), Gaps = 22/158 (13%)
Query: 195 PSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDG-MNLLK 253
P L + G+ C +EG P W+ +G +D + ++ + L
Sbjct: 9 PVKLTVSQGQPVKLNCSVEGXEEPDIQWVKDGAVV-----QNLDQLYIPVSEQHWIGFLS 63
Query: 254 IQNVSRTAAPLIILCLGVNAAGSDLAR-ASLTVSGPDPNPPPVILFGPANQTLPLRSEAR 312
+++V R+ A C + +++++ LTV G P P + +P + +
Sbjct: 64 LKSVERSDAGRY-WCQVEDGGETEISQPVWLTVEGV-----PFFTVEPKDLAVPPNAPFQ 117
Query: 313 LRCQVRGEG---SVQWWRGEREVGSGPR-----VNVTG 342
L C+ G ++ WWRG ++G GP +NVTG
Sbjct: 118 LSCEAVGPPEPVTIVWWRGTTKIG-GPAPSPSVLNVTG 154
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 5/88 (5%)
Query: 294 PVILFGPANQTLPLRSEARLRCQVRGE-GSVQWWRGEREVGS----GPRVNVTGDGSLVL 348
PVI+ PA+ + A L+C+ SV W V + R+ V DG+L
Sbjct: 342 PVIVEPPADLNVTEGMAAELKCRASTSLTSVSWITPNGTVMTHGAYKVRIAVLSDGTLNF 401
Query: 349 TDVTKEDSGEYTCVVKSPHGSASWSASL 376
T+VT +D+G YTC+V + G+ + SA+L
Sbjct: 402 TNVTVQDTGMYTCMVSNSVGNTTASATL 429
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 6/91 (6%)
Query: 100 PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKR-LGSAMPED----RMSVLPSRSLQ 154
P I+ P D V+ +C ++ +V W G+ M R++VL +L
Sbjct: 342 PVIVEPPADLNVTEGMAAELKCR-ASTSLTSVSWITPNGTVMTHGAYKVRIAVLSDGTLN 400
Query: 155 LSDVRLEDAGEYVCEAENAVGKISASATLTV 185
++V ++D G Y C N+VG +ASATL V
Sbjct: 401 FTNVTVQDTGMYTCMVSNSVGNTTASATLNV 431
>pdb|1BPV|A Chain A, Titin Module A71 From Human Cardiac Muscle, Nmr, 50
Structures
Length = 112
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 49/106 (46%), Gaps = 13/106 (12%)
Query: 400 PPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVA 459
PP KP +N T + +TL W++ G + Y VE R LP+ W++
Sbjct: 13 PPGKPVPLNITRHTVTLKWAKPEYTGGFKITSYIVE--KRDLPN---------GRWLKAN 61
Query: 460 -TNVPSPILTVTNLTVGLTYTFLVRALNSHG-LSAPSPLSDEIVLR 503
+N+ TV+ LT Y F V A N+ G +S PS SD I R
Sbjct: 62 FSNILENEFTVSGLTEDAAYEFRVIAKNAAGAISPPSEPSDAITCR 107
>pdb|2V9T|A Chain A, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 117
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 52/107 (48%), Gaps = 13/107 (12%)
Query: 2 SLLREEF--RV--QPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFEN----SK 53
SL +E+F R+ P V+ G+ A L C G P PT+ W K G ++ + S
Sbjct: 2 SLRQEDFPPRIVEHPSDLIVSKGEPATLNCKA-EGRPTPTIEWYKGGERVETDKDDPRSH 60
Query: 54 RLRLVDGT--NLAIQDSRKT--DDGRYQCVVKNVAGTRESTDAVLRV 96
R+ L G+ L I RK+ D+G Y CV +N G S DA L V
Sbjct: 61 RMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEV 107
Score = 36.2 bits (82), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 39/98 (39%), Gaps = 12/98 (12%)
Query: 100 PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAM------PEDRMSVLPSRSL 153
P I+ P D VS C G T+ W + G + P +LPS SL
Sbjct: 10 PRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSL 69
Query: 154 QLSDV-----RLEDAGEYVCEAENAVGK-ISASATLTV 185
+ D G YVC A N +G+ +S A+L V
Sbjct: 70 FFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEV 107
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 19/40 (47%)
Query: 189 PIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNR 228
P + E PSDL + G A C EG P P+ W G R
Sbjct: 10 PRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGER 49
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
Query: 104 RGPKDTTVSASSIIVFECSVGGDAVLTVHW----KRLGSAMPEDRMSVLPSRSLQLSDVR 159
R + V + F C GD + W K L SA R++V P +L++ +
Sbjct: 390 RKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGTLEVRYAQ 449
Query: 160 LEDAGEYVCEAENAVGKISASATLTVQ 186
++D G Y+C A NA G S A L V+
Sbjct: 450 VQDNGTYLCIAANAGGNDSMPAHLHVR 476
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/112 (21%), Positives = 42/112 (37%), Gaps = 25/112 (22%)
Query: 183 LTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWM---------LEGNRSLIYP 233
T + A I + + ++ G F+C +G PPP+ W+ R ++P
Sbjct: 380 FTCRRARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFP 439
Query: 234 GDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTV 285
++ A++ +G LC+ NA G+D A L V
Sbjct: 440 DGTLEVRYAQVQDNGT----------------YLCIAANAGGNDSMPAHLHV 475
Score = 29.6 bits (65), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Query: 13 KSQRVAA--GDTALLECGPPRGHPEPTLVWKK-NGHPIDFENSKRLRLVDGTNLAIQDSR 69
K+Q+V G T C G P P ++W H + +++ RL + L ++ ++
Sbjct: 391 KAQQVFVDEGHTVQFVCRAD-GDPPPAILWLSPRKHLVSAKSNGRLTVFPDGTLEVRYAQ 449
Query: 70 KTDDGRYQCVVKNVAGTRESTDAVLRV 96
D+G Y C+ N AG +S A L V
Sbjct: 450 VQDNGTYLCIAAN-AGGNDSMPAHLHV 475
>pdb|1MFN|A Chain A, Solution Nmr Structure Of Linked Cell Attachment Modules
Of Mouse Fibronectin Containing The Rgd And Synergy
Regions, 20 Structures
pdb|2MFN|A Chain A, Solution Nmr Structure Of Linked Cell Attachment Modules
Of Mouse Fibronectin Containing The Rgd And Synergy
Regions, 10 Structures
Length = 184
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 642 SGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVG-GGNNSALINMTVSASTPT 700
S +P+ + + TS+L+ W+PP V +R Y+I G G NS + TV S T
Sbjct: 92 SDIPRDLEVIASTPTSLLISWEPPAVS-----VRYYRITYGETGGNSPVQEFTVPGSKST 146
Query: 701 LLLTNLSAGIRYSVSLAATNRAGTGPYS 728
+ N+ G Y+++L A G P S
Sbjct: 147 ATINNIKPGADYTITLYAVTGRGDSPAS 174
>pdb|2EDH|A Chain A, Solution Structure Of The Pdz Domain (3614- 3713 ) From
Human Obscurin
Length = 113
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 311 ARLRCQVRGEGSVQWWRGEREVGSGPRVNVTGDGS---LVLTDVTKEDSGEYTCVVKSPH 367
A LRC++ V+WW+G + G R ++ DG+ L + + ED+GEY C+
Sbjct: 37 AVLRCELSKMAPVEWWKGHETLRDGDRHSLRQDGARCELQIRGLVAEDAGEYLCMCGKER 96
Query: 368 GSA 370
SA
Sbjct: 97 TSA 99
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 45/104 (43%), Gaps = 9/104 (8%)
Query: 90 TDAVLRVLVKPY-IIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVL 148
T A+L V P G ++ + + V C + A + WK + DR S+
Sbjct: 9 TSAMLTVRALPIKFTEGLRNEEATEGATAVLRCELSKMAPVE-WWKGHETLRDGDRHSLR 67
Query: 149 PSRS---LQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAP 189
+ LQ+ + EDAGEY+C GK SA LTV+ P
Sbjct: 68 QDGARCELQIRGLVAEDAGEYLC----MCGKERTSAMLTVRAMP 107
>pdb|2WV3|A Chain A, Neuroplastin-55 Binds To And Signals Through The
Fibroblast Growth Factor Receptor
Length = 190
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 38/165 (23%), Positives = 67/165 (40%), Gaps = 11/165 (6%)
Query: 117 IVFECSVGGDA--VLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAV 174
+ +C++ + ++ +W + G + R + + +++ R ED+GEY C + V
Sbjct: 21 VTLQCNLTSSSHTLMYSYWTKNGVELTATRKNA-SNMEYRINKPRAEDSGEYHC-VYHFV 78
Query: 175 GKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPG 234
A+AT+ V+ AP + G+DA+ C G P P W + N
Sbjct: 79 SAPKANATIEVKAAPDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVF---- 134
Query: 235 DRVDNIQAE---ITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGS 276
+ + N I + L I N+ T P C N+ GS
Sbjct: 135 EEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGS 179
Score = 37.4 bits (85), Expect = 0.039, Method: Composition-based stats.
Identities = 38/160 (23%), Positives = 67/160 (41%), Gaps = 20/160 (12%)
Query: 40 WKKNGHPIDFENSKRLRLVDGTNLA--IQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVL 97
W KNG ++ +++ + +N+ I R D G Y CV V+ + +A + V
Sbjct: 39 WTKNG--VELTATRK----NASNMEYRINKPRAEDSGEYHCVYHFVSAPK--ANATIEVK 90
Query: 98 VKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED------RMSVLPSR 151
P I + + + C G W++ + + E+ R ++
Sbjct: 91 AAPDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKE 150
Query: 152 SL-QLSDVRL---EDAGEYVCEAENAVGKISASATLTVQM 187
+ +L+ V L ED GEY C A N++G S S L V++
Sbjct: 151 NYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRVRV 190
>pdb|2Y25|A Chain A, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|B Chain B, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|C Chain C, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|D Chain D, Crystal Structure Of The Myomesin Domains My11-My13
Length = 317
Score = 40.4 bits (93), Expect = 0.005, Method: Composition-based stats.
Identities = 53/249 (21%), Positives = 93/249 (37%), Gaps = 37/249 (14%)
Query: 10 VQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGT-NLAIQDS 68
V+ S V LL+C E +VW K+ I + + DG L I +
Sbjct: 11 VEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFK--DGICTLLITEF 68
Query: 69 RKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAV 128
K D G Y+ ++K+ G +S ++ K ++ K +SA+ + + + G
Sbjct: 69 SKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQSTAEGIQLY 128
Query: 129 ---------LTVHWKRLGSAMP-EDRMSVLPSRS---LQLSDVRLEDAGEYVCE------ 169
L V+W GSA+ DR+ + LQ+++ D G+YV E
Sbjct: 129 SFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKT 188
Query: 170 ---------------AENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEG 214
A ++ +A A ++ P + ++ G+ C + G
Sbjct: 189 GHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWG 248
Query: 215 SPPPSTFWM 223
PPP W+
Sbjct: 249 DPPPEVSWL 257
Score = 32.3 bits (72), Expect = 1.5, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Query: 32 GHPEPTLVWKKNGHPIDFENSKRLRLVDGTN--LAIQDSRKTDDGRYQCVVKNVAGTRES 89
G P P + W KN + ++ L+ G I D G+Y VVKN G+ E+
Sbjct: 248 GDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGS-ET 306
Query: 90 TDAVLRVLV 98
+D + V +
Sbjct: 307 SDFTVSVFI 315
Score = 31.6 bits (70), Expect = 2.2, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Query: 313 LRCQVRGEG--SVQWWRGEREVGSGPRVNVTGDGS----LVLTDVTKEDSGEYTCVVKSP 366
L C V G+ V W + E+ + S N+ + + V+ DSG+Y VVK+
Sbjct: 242 LTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNK 301
Query: 367 HGSAS 371
+GS +
Sbjct: 302 YGSET 306
>pdb|1FHG|A Chain A, High Resolution Refinement Of Telokin
Length = 154
Score = 40.4 bits (93), Expect = 0.005, Method: Composition-based stats.
Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 11/114 (9%)
Query: 84 AGTRESTDAVLRVL------VKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLG 137
A E+ DA L + VKPY + D V S F+C V G V W +
Sbjct: 20 ANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDD 79
Query: 138 SAMPEDRMSVLP-----SRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQ 186
+ + E R + + SL +S+V +D +Y C+A N++G+ + +A L V+
Sbjct: 80 NPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVE 133
Score = 32.3 bits (72), Expect = 1.2, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
Query: 17 VAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN--LAIQDSRKTDDG 74
V G A +C G+P+P ++W K+ +P+ ++ + N L I + DD
Sbjct: 53 VVEGSAARFDC-KVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDA 111
Query: 75 RYQCVVKNVAGTRESTDAVL 94
+Y C N G T +L
Sbjct: 112 KYTCKAVNSLGEATCTAELL 131
>pdb|1TLK|A Chain A, X-Ray Structure Determination Of Telokin, The C-Terminal
Domain Of Myosin Light Chain Kinase, At 2.8 Angstroms
Resolution
Length = 154
Score = 40.4 bits (93), Expect = 0.005, Method: Composition-based stats.
Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 11/114 (9%)
Query: 84 AGTRESTDAVLRVL------VKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLG 137
A E+ DA L + VKPY + D V S F+C V G V W +
Sbjct: 20 ANKVENEDAFLEEVAEEKPHVKPYFTKTILDMDVVEGSAARFDCKVEGYPDPEVMWFKDD 79
Query: 138 SAMPEDRMSVLP-----SRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQ 186
+ + E R + + SL +S+V +D +Y C+A N++G+ + +A L V+
Sbjct: 80 NPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVE 133
Score = 32.3 bits (72), Expect = 1.2, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
Query: 17 VAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN--LAIQDSRKTDDG 74
V G A +C G+P+P ++W K+ +P+ ++ + N L I + DD
Sbjct: 53 VVEGSAARFDC-KVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDA 111
Query: 75 RYQCVVKNVAGTRESTDAVL 94
+Y C N G T +L
Sbjct: 112 KYTCKAVNSLGEATCTAELL 131
>pdb|3O4O|C Chain C, Crystal Structure Of An Interleukin-1 Receptor Complex
Length = 339
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 57/253 (22%), Positives = 95/253 (37%), Gaps = 39/253 (15%)
Query: 34 PEPTLVWKKN--GHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTR---- 87
P L W KN + E R+ DG L + + + D G Y C +N +
Sbjct: 53 PRINLTWHKNDSARTVPGEEETRMWAQDGA-LWLLPALQEDSGTYVCTTRNASYCDKMSI 111
Query: 88 -----ESTDAVLRVLVKPYIIRGPKDTTVSASSIIV---FECSVGGDAVLTVHWKRLGSA 139
E+TDA L + P I+ T+S S ++V + + W +
Sbjct: 112 ELRVFENTDAFLPFISYPQIL------TLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLL 165
Query: 140 MPEDRMSVLPSR---SLQLSDVRLEDAGEYVC----EAENAVGKISASATLTVQMA---- 188
+ +D L R L + DV LEDAG Y C E I+ S L ++
Sbjct: 166 LDKDNEKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEET 225
Query: 189 -PIVRERPSDLRLEVGRDAVFLCGI---EGSPPPSTFWMLEGNRSL--IYPGDRV-DNIQ 241
P++ + +G C + G+P + W + + YPG RV + +
Sbjct: 226 IPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPR 285
Query: 242 AEITSDGMNLLKI 254
E + + N +++
Sbjct: 286 QEYSENNENYIEV 298
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 25/50 (50%)
Query: 31 RGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVV 80
R + + W K+ +D +N K L + T+L + D D G Y+CV+
Sbjct: 150 RDKTDVKIQWYKDSLLLDKDNEKFLSVRGTTHLLVHDVALEDAGYYRCVL 199
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 23/51 (45%)
Query: 343 DGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPE 393
DG+L L +EDSG Y C ++ S LR T+ + F P+
Sbjct: 80 DGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQ 130
>pdb|3B5H|A Chain A, Crystal Structure Of The Extracellular Portion Of
Hab18gCD147
pdb|3B5H|B Chain B, Crystal Structure Of The Extracellular Portion Of
Hab18gCD147
pdb|3B5H|C Chain C, Crystal Structure Of The Extracellular Portion Of
Hab18gCD147
pdb|3B5H|D Chain D, Crystal Structure Of The Extracellular Portion Of
Hab18gCD147
Length = 184
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 76/185 (41%), Gaps = 31/185 (16%)
Query: 115 SIIVFECSVGGDAV-LTVH-WKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAEN 172
S I+ CS+ A +T H W + G + ED LP + + + GEY C
Sbjct: 14 SKILLTCSLNDSATEVTGHRWLKGGVVLKED---ALPGQKTEFKVDSDDQWGEYSCVF-- 68
Query: 173 AVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFW---------- 222
+ + +A + + P V+ S + G A+ +C E S PP T W
Sbjct: 69 -LPEPMGTANIQLHGPPRVKAVKSSEHINEGETAMLVCKSE-SVPPVTDWAWYKITDSED 126
Query: 223 --MLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLAR 280
++ G+ S + +S G + L I+N++ A P C G ++ GSD A
Sbjct: 127 KALMNGSESRFFVS----------SSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAI 176
Query: 281 ASLTV 285
+L V
Sbjct: 177 ITLRV 181
>pdb|3DAR|A Chain A, Crystal Structure Of D2 Domain From Human Fgfr2
pdb|3DAR|B Chain B, Crystal Structure Of D2 Domain From Human Fgfr2
Length = 105
Score = 40.0 bits (92), Expect = 0.007, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 7/86 (8%)
Query: 9 RVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN----LA 64
+++ + V A +T C P G+P PT+ W KNG +F+ R+ N L
Sbjct: 17 KMEKRLHAVPAANTVKFRC-PAGGNPMPTMRWLKNGK--EFKQEHRIGGYKVRNQHWSLI 73
Query: 65 IQDSRKTDDGRYQCVVKNVAGTREST 90
++ +D G Y CVV+N G+ T
Sbjct: 74 MESVVPSDKGNYTCVVENEYGSINHT 99
Score = 37.0 bits (84), Expect = 0.050, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Query: 111 VSASSIIVFECSVGGDAVLTVHWKRLGSAMP-EDRMSVLPSR----SLQLSDVRLEDAGE 165
V A++ + F C GG+ + T+ W + G E R+ R SL + V D G
Sbjct: 25 VPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGN 84
Query: 166 YVCEAENAVGKISASATLTV 185
Y C EN G I+ + L V
Sbjct: 85 YTCVVENEYGSINHTYHLDV 104
Score = 33.5 bits (75), Expect = 0.66, Method: Composition-based stats.
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 6/73 (8%)
Query: 303 QTLPLRSEARLRCQVRGEG--SVQWWRGEREVGSGPRVN----VTGDGSLVLTDVTKEDS 356
+P + + RC G +++W + +E R+ SL++ V D
Sbjct: 23 HAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDK 82
Query: 357 GEYTCVVKSPHGS 369
G YTCVV++ +GS
Sbjct: 83 GNYTCVVENEYGS 95
>pdb|1WVZ|A Chain A, Solution Structure Of The D2 Domain Of The Fibroblast
Growth Factor
Length = 104
Score = 39.7 bits (91), Expect = 0.008, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 7/86 (8%)
Query: 9 RVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN----LA 64
+++ + V A +T C P G+P PT+ W KNG +F+ R+ N L
Sbjct: 16 KMEKRLHAVPAANTVKFRC-PAGGNPMPTMRWLKNGK--EFKQEHRIGGYKVRNQHWSLI 72
Query: 65 IQDSRKTDDGRYQCVVKNVAGTREST 90
++ +D G Y CVV+N G+ T
Sbjct: 73 MESVVPSDKGNYTCVVENEYGSINHT 98
Score = 37.0 bits (84), Expect = 0.051, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Query: 111 VSASSIIVFECSVGGDAVLTVHWKRLGSAMP-EDRMSVLPSR----SLQLSDVRLEDAGE 165
V A++ + F C GG+ + T+ W + G E R+ R SL + V D G
Sbjct: 24 VPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGN 83
Query: 166 YVCEAENAVGKISASATLTV 185
Y C EN G I+ + L V
Sbjct: 84 YTCVVENEYGSINHTYHLDV 103
Score = 33.5 bits (75), Expect = 0.67, Method: Composition-based stats.
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 6/73 (8%)
Query: 303 QTLPLRSEARLRCQVRGEG--SVQWWRGEREVGSGPRVN----VTGDGSLVLTDVTKEDS 356
+P + + RC G +++W + +E R+ SL++ V D
Sbjct: 22 HAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDK 81
Query: 357 GEYTCVVKSPHGS 369
G YTCVV++ +GS
Sbjct: 82 GNYTCVVENEYGS 94
>pdb|3JZ7|A Chain A, Crystal Structure Of The Extracellular Domains Of
Coxsackie & Adenovirus Receptor From Mouse (Mcar)
Length = 214
Score = 39.7 bits (91), Expect = 0.008, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 54/121 (44%), Gaps = 9/121 (7%)
Query: 58 VDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSII 117
++ TNL + +D G YQC VK G + +L VLVKP R D + +
Sbjct: 86 INVTNLQL-----SDIGTYQCKVKKAPGV-ANKKFLLTVLVKPSGTRCFVDGSEEIGNDF 139
Query: 118 VFECSVG-GDAVLTVHWKRLGSA--MPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAV 174
+C G L W++L + MP ++ + S + + + E +G Y C +N V
Sbjct: 140 KLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVISVKNASSEYSGTYSCTVQNRV 199
Query: 175 G 175
G
Sbjct: 200 G 200
Score = 30.8 bits (68), Expect = 4.3, Method: Composition-based stats.
Identities = 38/139 (27%), Positives = 59/139 (42%), Gaps = 12/139 (8%)
Query: 152 SLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCG 211
S+ +++++L D G Y C+ + A G + LTV + P D E+G D C
Sbjct: 85 SINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCFVDGSEEIGNDFKLKCE 144
Query: 212 -IEGSPPPSTFWM-LEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCL 269
EGS P W L ++++ P AE+TS ++ ++N S + C
Sbjct: 145 PKEGSLPLQFEWQKLSDSQTMPTPW------LAEMTSP---VISVKNASSEYSG-TYSCT 194
Query: 270 GVNAAGSDLARASLTVSGP 288
N GSD L V P
Sbjct: 195 VQNRVGSDQCMLRLDVVPP 213
>pdb|3CAF|A Chain A, Crystal Structure Of Hfgfr2 D2 Domain
pdb|3CU1|A Chain A, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3CU1|C Chain C, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3EUU|A Chain A, Crystal Structure Of The Fgfr2 D2 Domain
pdb|3EUU|B Chain B, Crystal Structure Of The Fgfr2 D2 Domain
Length = 100
Score = 39.7 bits (91), Expect = 0.008, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 7/86 (8%)
Query: 9 RVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN----LA 64
+++ + V A +T C P G+P PT+ W KNG +F+ R+ N L
Sbjct: 12 KMEKRLHAVPAANTVKFRC-PAGGNPMPTMRWLKNGK--EFKQEHRIGGYKVRNQHWSLI 68
Query: 65 IQDSRKTDDGRYQCVVKNVAGTREST 90
++ +D G Y CVV+N G+ T
Sbjct: 69 MESVVPSDKGNYTCVVENEYGSINHT 94
Score = 37.0 bits (84), Expect = 0.054, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Query: 111 VSASSIIVFECSVGGDAVLTVHWKRLGSAMP-EDRMSVLPSR----SLQLSDVRLEDAGE 165
V A++ + F C GG+ + T+ W + G E R+ R SL + V D G
Sbjct: 20 VPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGN 79
Query: 166 YVCEAENAVGKISASATLTV 185
Y C EN G I+ + L V
Sbjct: 80 YTCVVENEYGSINHTYHLDV 99
Score = 33.1 bits (74), Expect = 0.69, Method: Composition-based stats.
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 6/73 (8%)
Query: 303 QTLPLRSEARLRCQVRGEG--SVQWWRGEREVGSGPRVN----VTGDGSLVLTDVTKEDS 356
+P + + RC G +++W + +E R+ SL++ V D
Sbjct: 18 HAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDK 77
Query: 357 GEYTCVVKSPHGS 369
G YTCVV++ +GS
Sbjct: 78 GNYTCVVENEYGS 90
>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human
Palladin
Length = 110
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 39/92 (42%), Gaps = 5/92 (5%)
Query: 99 KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSR-----SL 153
+P+ ++ P D TV + +C V G + W+ G + D + R SL
Sbjct: 9 RPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSL 68
Query: 154 QLSDVRLEDAGEYVCEAENAVGKISASATLTV 185
+ V DAG Y C A N G+ S S L V
Sbjct: 69 IIEPVTSRDAGIYTCIATNRAGQNSFSLELVV 100
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
Query: 4 LREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG--T 61
R F P V G ++C G P P L W+ +G P+ +++ ++ + +
Sbjct: 8 FRPHFLQAPGDLTVQEGKLCRMDC-KVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVH 66
Query: 62 NLAIQDSRKTDDGRYQCVVKNVAG 85
+L I+ D G Y C+ N AG
Sbjct: 67 SLIIEPVTSRDAGIYTCIATNRAG 90
Score = 33.5 bits (75), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 45/106 (42%), Gaps = 10/106 (9%)
Query: 189 PIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAE-ITSD 247
P + P DL ++ G+ C + G P P W L+G R D+ + +
Sbjct: 10 PHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPV------RPDSAHKMLVREN 63
Query: 248 GMNLLKIQNV-SRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNP 292
G++ L I+ V SR A I C+ N AG + L V+ + P
Sbjct: 64 GVHSLIIEPVTSRDAG--IYTCIATNRAGQNSFSLELVVAAKESGP 107
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
Query: 294 PVILFGPANQTLPLRSEARLRCQVRG--EGSVQWWRGEREV--GSGPRVNVTGDG--SLV 347
P L P + T+ R+ C+V G + W + V S ++ V +G SL+
Sbjct: 10 PHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLI 69
Query: 348 LTDVTKEDSGEYTCVVKSPHGSASWSASL 376
+ VT D+G YTC+ + G S+S L
Sbjct: 70 IEPVTSRDAGIYTCIATNRAGQNSFSLEL 98
>pdb|3MJ7|B Chain B, Crystal Structure Of The Complex Of Jaml And Coxsackie And
Adenovirus Receptor, Car
Length = 225
Score = 39.7 bits (91), Expect = 0.009, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 54/121 (44%), Gaps = 9/121 (7%)
Query: 58 VDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSII 117
++ TNL + +D G YQC VK G + +L VLVKP R D + +
Sbjct: 88 INVTNLQL-----SDIGTYQCKVKKAPGV-ANKKFLLTVLVKPSGTRCFVDGSEEIGNDF 141
Query: 118 VFECSVG-GDAVLTVHWKRLGSA--MPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAV 174
+C G L W++L + MP ++ + S + + + E +G Y C +N V
Sbjct: 142 KLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVISVKNASSEYSGTYSCTVQNRV 201
Query: 175 G 175
G
Sbjct: 202 G 202
Score = 30.4 bits (67), Expect = 4.5, Method: Composition-based stats.
Identities = 38/139 (27%), Positives = 59/139 (42%), Gaps = 12/139 (8%)
Query: 152 SLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLC- 210
S+ +++++L D G Y C+ + A G + LTV + P D E+G D C
Sbjct: 87 SINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCFVDGSEEIGNDFKLKCE 146
Query: 211 GIEGSPPPSTFWM-LEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCL 269
EGS P W L ++++ P AE+TS ++ ++N S + C
Sbjct: 147 PKEGSLPLQFEWQKLSDSQTMPTPW------LAEMTSP---VISVKNASSEYSG-TYSCT 196
Query: 270 GVNAAGSDLARASLTVSGP 288
N GSD L V P
Sbjct: 197 VQNRVGSDQCMLRLDVVPP 215
>pdb|2CR3|A Chain A, Solution Structure Of The First Ig-Like Domain Of Human
Fibroblast Growth Factor Receptor 1
Length = 99
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 4/79 (5%)
Query: 312 RLRCQVRGE-GSVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSA 370
+LRC++R + S+ W R ++ R +TG+ + + D DSG Y CV SP GS
Sbjct: 22 QLRCRLRDDVQSINWLRDGVQLAESNRTRITGE-EVEVQDSVPADSGLYACVTSSPSGSD 80
Query: 371 S--WSASLRFESPTNPNIG 387
+ +S ++ P+ P+ G
Sbjct: 81 TTYFSVNVSDALPSGPSSG 99
>pdb|1UJT|A Chain A, Solution Structure Of The Second Fibronectin Type Iii
Domain Of Human Kiaa1568 Protein
Length = 120
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 50/114 (43%), Gaps = 5/114 (4%)
Query: 529 GESLRRARQHLQEGGGSLIELTEVKPMTSTSVKLTWEI-LNTDYIEG---VYIYSRGLDP 584
G S RQ +E G L+ L +T T+V++TW + +I+G +Y + GL
Sbjct: 1 GSSGSSGRQVQKELGDVLVRLHNPVVLTPTTVQVTWTVDRQPQFIQGYRVMYRQTSGLQA 60
Query: 585 PASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVRTLE 638
+S L E S LV L YE + P+F G S + VRT E
Sbjct: 61 TSSWQNLDAKVPTERSAVLV-NLKKGVTYEIKVRPYFNEFQGMDSESKTVRTTE 113
>pdb|2WP3|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWM|C Chain C, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
Length = 109
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Query: 281 ASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRGEGS--VQWWRGEREVGSGPRV 338
+S+ S D PP L P + +EA L+C V GE V W +G +++ + R+
Sbjct: 2 SSMKASSGDQGSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERL 61
Query: 339 NVTGDGS---LVLTDVTKEDSGEYTC 361
+ DG+ L+LT D+G Y C
Sbjct: 62 SFPADGAEHGLLLTAALPTDAGVYVC 87
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Query: 12 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRL-VDGTN--LAIQDS 68
P+ RV +G A L+C G P P +VW+K G S+RL DG L + +
Sbjct: 21 PRPVRVVSGAEAELKCVV-LGEPPPVVVWEKGGQ--QLAASERLSFPADGAEHGLLLTAA 77
Query: 69 RKTDDGRYQCVVKN 82
TD G Y C +N
Sbjct: 78 LPTDAGVYVCRARN 91
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 4/94 (4%)
Query: 100 PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPS----RSLQL 155
P +R P+ V + + +C V G+ V W++ G + P+ L L
Sbjct: 15 PCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLL 74
Query: 156 SDVRLEDAGEYVCEAENAVGKISASATLTVQMAP 189
+ DAG YVC A NA G+ A+A +TV P
Sbjct: 75 TAALPTDAGVYVCRARNAAGEAYAAAAVTVLEPP 108
>pdb|3K0W|A Chain A, Crystal Structure Of The Tandem Ig-Like C2-Type 2 Domains
Of The Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
Length = 218
Score = 38.5 bits (88), Expect = 0.020, Method: Composition-based stats.
Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 12/83 (14%)
Query: 10 VQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSR 69
V+P SQ++ G T +L+C G P P W KN P+ E +K+L +V +L Q
Sbjct: 123 VEPTSQKLMPGSTLVLQC-VAVGSPIPHYQWFKNELPLTHE-TKKLYMVPYVDLEHQ--- 177
Query: 70 KTDDGRYQCVVKNVAGTRESTDA 92
G Y C V N R+S D+
Sbjct: 178 ----GTYWCHVYN---DRDSQDS 193
Score = 35.4 bits (80), Expect = 0.16, Method: Composition-based stats.
Identities = 33/137 (24%), Positives = 47/137 (34%), Gaps = 21/137 (15%)
Query: 102 IIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLE 161
I P+ V A + C G + W ++ +P S L + V ++
Sbjct: 21 ITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGNTS-----ELIFNAVHVK 75
Query: 162 DAGEYVCEAENAVG-KISASATLTVQMAPIVRER---------------PSDLRLEVGRD 205
DAG YVC N + S + L V P +R P+ +L G
Sbjct: 76 DAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGST 135
Query: 206 AVFLCGIEGSPPPSTFW 222
V C GSP P W
Sbjct: 136 LVLQCVAVGSPIPHYQW 152
>pdb|3BFO|A Chain A, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The
Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
pdb|3BFO|B Chain B, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The
Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
pdb|3BFO|C Chain C, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The
Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
pdb|3BFO|D Chain D, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The
Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
Length = 91
Score = 38.5 bits (88), Expect = 0.020, Method: Composition-based stats.
Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 12/83 (14%)
Query: 10 VQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSR 69
V+P SQ++ G T +L+C G P P W KN P+ E +K+L +V +L Q
Sbjct: 8 VEPTSQKLMPGSTLVLQC-VAVGSPIPHYQWFKNELPLTHE-TKKLYMVPYVDLEHQ--- 62
Query: 70 KTDDGRYQCVVKNVAGTRESTDA 92
G Y C V N R+S D+
Sbjct: 63 ----GTYWCHVYN---DRDSQDS 78
>pdb|2DM7|A Chain A, Solution Structure Of The 14th Ig-Like Domain Of Human
Kiaa1556 Protein
Length = 108
Score = 38.5 bits (88), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 13/102 (12%)
Query: 299 GPANQTLPLRSE-------ARLRCQVRGEGSVQWWRGEREVGSGPRVNVTGDGS---LVL 348
GPA T L+++ A L+C++ V+W +G + G R ++ DG+ L +
Sbjct: 7 GPARFTQDLKTKEASEGATATLQCELSKVAPVEWKKGPETLRDGGRYSLKQDGTRCELQI 66
Query: 349 TDVTKEDSGEYTCVVKSPHGSASWSAS---LRFESPTNPNIG 387
D++ D+GEY+C+ SA+ + RF + P+ G
Sbjct: 67 HDLSVADAGEYSCMCGQERTSATLTVRALPARFTEGSGPSSG 108
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
Query: 153 LQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAP 189
LQ+ D+ + DAGEY C G+ SATLTV+ P
Sbjct: 64 LQIHDLSVADAGEYSC----MCGQERTSATLTVRALP 96
>pdb|2WWK|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig F17r
Mutant Complex
Length = 109
Score = 38.5 bits (88), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Query: 281 ASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRGEGS--VQWWRGEREVGSGPRV 338
+S+ S D PP L P + +EA L+C V GE V W +G +++ + R+
Sbjct: 2 SSMKASSGDQGSPPCFLRRPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERL 61
Query: 339 NVTGDGS---LVLTDVTKEDSGEYTC 361
+ DG+ L+LT D+G Y C
Sbjct: 62 SFPADGAEHGLLLTAALPTDAGVYVC 87
Score = 37.0 bits (84), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRL-VDGTN--LA 64
F +P+ RV +G A L+C G P P +VW+K G S+RL DG L
Sbjct: 17 FLRRPRPVRVVSGAEAELKCVV-LGEPPPVVVWEKGGQ--QLAASERLSFPADGAEHGLL 73
Query: 65 IQDSRKTDDGRYQCVVKN 82
+ + TD G Y C +N
Sbjct: 74 LTAALPTDAGVYVCRARN 91
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 4/94 (4%)
Query: 100 PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPS----RSLQL 155
P +R P+ V + + +C V G+ V W++ G + P+ L L
Sbjct: 15 PCFLRRPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLL 74
Query: 156 SDVRLEDAGEYVCEAENAVGKISASATLTVQMAP 189
+ DAG YVC A NA G+ A+A +TV P
Sbjct: 75 TAALPTDAGVYVCRARNAAGEAYAAAAVTVLEPP 108
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 9/77 (11%)
Query: 189 PIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFW-----MLEGNRSLIYPGDRVDN---I 240
P RP +R+ G +A C + G PPP W L + L +P D ++ +
Sbjct: 15 PCFLRRPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLL 74
Query: 241 QAEITSD-GMNLLKIQN 256
A + +D G+ + + +N
Sbjct: 75 TAALPTDAGVYVCRARN 91
>pdb|2YUX|A Chain A, Solution Structure Of 3rd Fibronectin Type Three Domain Of
Slow Type Myosin-Binding Protein C
Length = 120
Score = 38.1 bits (87), Expect = 0.021, Method: Composition-based stats.
Identities = 24/102 (23%), Positives = 42/102 (41%), Gaps = 11/102 (10%)
Query: 398 PGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVR 457
PGPP + + + L W+ G++++ GY ++ D + W
Sbjct: 18 PGPPQIVKIEDVWGENVALTWTPPKDDGNAAITGYTIQ-----------KADKKSMEWFT 66
Query: 458 VATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDE 499
V + T+T L +G Y F V + N GLS + ++ E
Sbjct: 67 VIEHYHRTSATITELVIGNEYYFRVFSENMCGLSEDATMTKE 108
>pdb|3KVQ|A Chain A, Crystal Structure Of Vegfr2 Extracellular Domain D7
Length = 108
Score = 38.1 bits (87), Expect = 0.022, Method: Composition-based stats.
Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
Query: 98 VKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLP--SRSLQL 155
V P I ++ T S I C+ G+ + W + + ED VL +R+L +
Sbjct: 9 VAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTI 68
Query: 156 SDVRLEDAGEYVCEAENAVGKISASATLTVQMA 188
VR ED G Y C+A + +G A ++ A
Sbjct: 69 RRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGA 101
Score = 34.7 bits (78), Expect = 0.27, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Query: 13 KSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGT-NLAIQDSRKT 71
++Q + G++ + C G+P P ++W K+ + E+S + L DG NL I+ RK
Sbjct: 18 ENQTTSIGESIEVSC-TASGNPPPQIMWFKDNETL-VEDSG-IVLKDGNRNLTIRRVRKE 74
Query: 72 DDGRYQCVVKNVAG 85
D+G Y C +V G
Sbjct: 75 DEGLYTCQACSVLG 88
>pdb|1FNF|A Chain A, Fragment Of Human Fibronectin Encompassing Type-Iii
Repeats 7 Through 10
Length = 368
Score = 38.1 bits (87), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 642 SGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVG-GGNNSALINMTVSASTPT 700
S VP+ + V TS+L+ W P V +R Y+I G G NS + TV S T
Sbjct: 276 SDVPRDLEVVAATPTSLLISWDAPAV-----TVRYYRITYGETGGNSPVQEFTVPGSKST 330
Query: 701 LLLTNLSAGIRYSVSLAATNRAGTGPYS 728
++ L G+ Y++++ A G P S
Sbjct: 331 ATISGLKPGVDYTITVYAVTGRGDSPAS 358
>pdb|1TTF|A Chain A, The Three-Dimensional Structure Of The Tenth Type Iii
Module Of Fibronectin: An Insight Into Rgd-Mediated
Interactions
pdb|1TTG|A Chain A, The Three-Dimensional Structure Of The Tenth Type Iii
Module Of Fibronectin: An Insight Into Rgd-Mediated
Interactions
Length = 94
Score = 38.1 bits (87), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 642 SGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVG-GGNNSALINMTVSASTPT 700
S VP+ + V TS+L+ W P V +R Y+I G G NS + TV S T
Sbjct: 2 SDVPRDLEVVAATPTSLLISWDAPAV-----TVRYYRITYGETGGNSPVQEFTVPGSKST 56
Query: 701 LLLTNLSAGIRYSVSLAATNRAGTGPYS 728
++ L G+ Y++++ A G P S
Sbjct: 57 ATISGLKPGVDYTITVYAVTGRGDSPAS 84
>pdb|2EDF|A Chain A, Solution Structure Of The Second Ig-Like Domain(2826-2915)
From Human Obscurin
Length = 103
Score = 38.1 bits (87), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 11/96 (11%)
Query: 299 GPANQTLPLRSE-------ARLRCQVRGEGS-VQWWRGEREVGSGPRVNVTGDGS---LV 347
GPA PL + LRC++ G+ V W + + + + +V +G+ LV
Sbjct: 7 GPAAIIKPLEDQWVAPGEDVELRCELSRAGTPVHWLKDRKAIRKSQKYDVVCEGTMAMLV 66
Query: 348 LTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTN 383
+ + +D+GEYTC V++ +AS + P++
Sbjct: 67 IRGASLKDAGEYTCEVEASKSTASLHVEEKASGPSS 102
>pdb|3Q5T|A Chain A, V BetaV BETA HOMODIMERIZATION-Based Pre-Tcr Model
Suggested By Tcr Beta Crystal Structures
Length = 241
Score = 37.7 bits (86), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 71/172 (41%), Gaps = 26/172 (15%)
Query: 187 MAPIVRERPSDLRLEVGRDAVFLCG-IEGSPPPSTFWMLE----GNRSLIYPGDR--VDN 239
M V + P L+ G+ F C I G + +W + G + L+Y D +DN
Sbjct: 1 MEAGVTQSPRYAVLQEGQSVSFWCDPISGHD--TLYWYQQPRDQGPQLLVYFRDEAVIDN 58
Query: 240 IQ------AEITSDGMN-LLKIQNVSRTAAPLIILCLGVNAAGSDL-----ARASLTVSG 287
Q + + G N LKIQ+ ++ LC + G+++ R ++
Sbjct: 59 SQLPSDRFSAVRPKGTNSTLKIQS-AKQGDTATYLCASSSGVGTEVFFGKGTRLTVVEDL 117
Query: 288 PDPNPPPVILFGPANQTLPLRSEARLRCQVRG----EGSVQWWRGEREVGSG 335
+ PP V LF P+ + + +A L C RG + WW +EV SG
Sbjct: 118 RNVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVHSG 169
>pdb|2DLT|A Chain A, Solution Structure Of The Ig-Like Domain(433- 525) Of
Murine Myosin-Binding Protein C, Fast-Type
Length = 106
Score = 37.4 bits (85), Expect = 0.038, Method: Composition-based stats.
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 8/83 (9%)
Query: 301 ANQTLPLRSEARLRCQVRGEGSV-QWWRGEREVGSGPRVNVTGDG---SLVLTDVTKEDS 356
A+ T+ +A +C+V E +W++ EV R+ ++ G LV+ DV ED
Sbjct: 16 ADLTVKAAEQAVFKCEVSDEKVTGKWYKNGVEVRPSKRITISHVGRFHKLVIDDVRPEDE 75
Query: 357 GEYTCVVKSPHGSA-SWSASLRF 378
G+YT V P G A S SA L F
Sbjct: 76 GDYTFV---PDGYALSLSAKLNF 95
Score = 31.2 bits (69), Expect = 2.9, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 102 IIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPS---RSLQLSDV 158
+++ D TV A+ VF+C V + V +K P R+++ L + DV
Sbjct: 11 VLQDIADLTVKAAEQAVFKCEVSDEKVTGKWYKNGVEVRPSKRITISHVGRFHKLVIDDV 70
Query: 159 RLEDAGEY 166
R ED G+Y
Sbjct: 71 RPEDEGDY 78
>pdb|2EDR|A Chain A, Solution Structure Of The Ig-Like Domain (3361-3449) Of
Human Obscurin
Length = 102
Score = 37.4 bits (85), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 15/100 (15%)
Query: 299 GPANQTLPLRSE-------ARLRCQVRGEGSVQWWRGEREVGSGPRVNVTGDGS---LVL 348
GPA+ LR + A LRC++ V+W +G + G R ++ DG+ L +
Sbjct: 7 GPAHFIGRLRHQESIEGATATLRCELSKAAPVEWRKGRESLRDGDRHSLRQDGAVCELQI 66
Query: 349 TDVTKEDSGEYTCVVKSPHGSASWSASLRFES-PTNPNIG 387
+ D+GEY+CV G SA+L ++ P+ P+ G
Sbjct: 67 CGLAVADAGEYSCVC----GEERTSATLTVKALPSGPSSG 102
>pdb|3L5J|A Chain A, Crystal Structure Of Fniii Domains Of Human Gp130 (Domains
4
pdb|3L5J|B Chain B, Crystal Structure Of Fniii Domains Of Human Gp130 (Domains
4
Length = 288
Score = 37.4 bits (85), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 54/125 (43%), Gaps = 9/125 (7%)
Query: 602 FLVTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVRTLECEPSGVPQL-TDPVLLNATSVLL 660
+L LA Y + P + G P +++A + PS P + T V N +L
Sbjct: 159 YLRGNLAESKCYLITVTPVYADGPGSPESIKAYLK-QAPPSKGPTVRTKKVGKN--EAVL 215
Query: 661 KWKPPPVGTHNGVIRTYQIIVGG--GNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAA 718
+W PV NG IR Y I GN +A+ V +S L++L++ Y V +AA
Sbjct: 216 EWDQLPVDVQNGFIRNYTIFYRTIIGNETAV---NVDSSHTEYTLSSLTSDTLYMVRMAA 272
Query: 719 TNRAG 723
G
Sbjct: 273 YTDEG 277
>pdb|2CKN|A Chain A, Nmr Structure Of The First Ig Module Of Mouse Fgfr1
Length = 95
Score = 37.0 bits (84), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 312 RLRCQVRGE-GSVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGS 369
+LRC++R + S+ W R ++ R +TG+ + + D DSG Y CV SP GS
Sbjct: 28 QLRCRLRDDVQSINWLRDGVQLVESNRTRITGE-EVEVRDSIPADSGLYACVTSSPSGS 85
>pdb|3L5H|A Chain A, Crystal Structure Of The Full Ectodomain Of Human Gp130:
New Insights Into The Molecular Assembly Of Receptor
Complexes
Length = 589
Score = 36.6 bits (83), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 54/125 (43%), Gaps = 9/125 (7%)
Query: 602 FLVTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVRTLECEPSGVPQL-TDPVLLNATSVLL 660
+L LA Y + P + G P +++A + PS P + T V N +L
Sbjct: 458 YLRGNLAESKCYLITVTPVYADGPGSPESIKAYLK-QAPPSKGPTVRTKKVGKN--EAVL 514
Query: 661 KWKPPPVGTHNGVIRTYQIIVGG--GNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAA 718
+W PV NG IR Y I GN +A+ V +S L++L++ Y V +AA
Sbjct: 515 EWDQLPVDVQNGFIRNYTIFYRTIIGNETAV---NVDSSHTEYTLSSLTSDTLYMVRMAA 571
Query: 719 TNRAG 723
G
Sbjct: 572 YTDEG 576
>pdb|3KNB|B Chain B, Crystal Structure Of The Titin C-Terminus In Complex With
Obscurin- Like 1
Length = 107
Score = 36.6 bits (83), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Query: 283 LTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRGEGS--VQWWRGEREVGSGPRVNV 340
+ S D PP L P + +EA L+C V GE V W +G +++ + R++
Sbjct: 3 MKASSGDQGSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSF 62
Query: 341 TGDGS---LVLTDVTKEDSGEYTC 361
DG+ L+LT D+G Y C
Sbjct: 63 PADGAEHGLLLTAALPTDAGVYVC 86
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Query: 12 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRL-VDGTN--LAIQDS 68
P+ RV +G A L+C G P P +VW+K G S+RL DG L + +
Sbjct: 20 PRPVRVVSGAEAELKCVV-LGEPPPVVVWEKGGQ--QLAASERLSFPADGAEHGLLLTAA 76
Query: 69 RKTDDGRYQCVVKN 82
TD G Y C +N
Sbjct: 77 LPTDAGVYVCRARN 90
Score = 33.1 bits (74), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 4/94 (4%)
Query: 100 PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPS----RSLQL 155
P +R P+ V + + +C V G+ V W++ G + P+ L L
Sbjct: 14 PCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLL 73
Query: 156 SDVRLEDAGEYVCEAENAVGKISASATLTVQMAP 189
+ DAG YVC A NA G+ A+A +TV P
Sbjct: 74 TAALPTDAGVYVCRARNAAGEAYAAAAVTVLEPP 107
>pdb|3L5I|A Chain A, Crystal Structure Of Fniii Domains Of Human Gp130 (Domains
4-6)
Length = 290
Score = 36.2 bits (82), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 53/125 (42%), Gaps = 9/125 (7%)
Query: 602 FLVTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVRTLECEPSGVPQL-TDPVLLNATSVLL 660
+L LA Y + P + G P +++A + PS P + T V N +L
Sbjct: 159 YLRGNLAESKCYLITVTPVYADGPGSPESIKAYLK-QAPPSKGPTVRTKKVGKN--EAVL 215
Query: 661 KWKPPPVGTHNGVIRTYQIIVGG--GNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAA 718
+W PV NG IR Y I GN +A + V +S L++L++ Y V AA
Sbjct: 216 EWDQLPVDVQNGFIRNYTIFYRTIIGNETA---VNVDSSHTEYTLSSLTSDTLYXVRXAA 272
Query: 719 TNRAG 723
G
Sbjct: 273 YTDEG 277
>pdb|2IF7|A Chain A, Crystal Structure Of Ntb-A
pdb|2IF7|B Chain B, Crystal Structure Of Ntb-A
pdb|2IF7|C Chain C, Crystal Structure Of Ntb-A
pdb|2IF7|D Chain D, Crystal Structure Of Ntb-A
Length = 193
Score = 36.2 bits (82), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 65/150 (43%), Gaps = 14/150 (9%)
Query: 34 PEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAV 93
PE + K G ++F S L+L +NL ++D T R Q K A T +
Sbjct: 51 PEIHVTNPKQGKRLNFTQSYSLQL---SNLKMED---TGSYRAQISTKTSAKLSSYTLRI 104
Query: 94 LRVLVKPYIIRGPKDTTVSASSIIVFECSV-GGDAVLTVHWKRLGSAMPEDRMSVLPSRS 152
LR L + + + + + CSV D ++ W+ LG + +S P+ +
Sbjct: 105 LRQL-RNIQVTNHSQLFQNMTCELHLTCSVEDADDNVSFRWEALG-----NTLSSQPNLT 158
Query: 153 LQLSDVRLEDAGEYVCEAENAVGKISASAT 182
+ D R+ +Y C AENAV +S S +
Sbjct: 159 VSW-DPRISSEQDYTCIAENAVSNLSFSVS 187
Score = 33.1 bits (74), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Query: 144 RMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTV--QMAPIVRERPSDLRLE 201
R++ S SLQLS++++ED G Y + +S TL + Q+ I S L
Sbjct: 63 RLNFTQSYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQN 122
Query: 202 VGRDAVFLCGIEGSPPPSTF-WMLEGN 227
+ + C +E + +F W GN
Sbjct: 123 MTCELHLTCSVEDADDNVSFRWEALGN 149
>pdb|1X4Z|A Chain A, Solution Structure Of The 2nd Fibronectin Type Iii Domain
From Mouse Biregional Cell Adhesion
Molecule-RelatedDOWN- Regulated Oncogenes (Cdon) Binding
Protein
Length = 121
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 47/111 (42%), Gaps = 15/111 (13%)
Query: 398 PGPPTKPTLVNQTANGLTLAW-SRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWV 456
P P +PT+ + + + W R N G + ++VE W+
Sbjct: 18 PEAPDRPTISTASETSVYVTWIPRGN--GGFPIQSFRVEYKKL----------KKVGDWI 65
Query: 457 RVATNVPSPILTV--TNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGT 505
+ +P L+V T L G++Y F VRALN G S PS S V+ G+
Sbjct: 66 LATSAIPPSRLSVEITGLEKGISYKFRVRALNMLGESEPSAPSRPYVVSGS 116
>pdb|2KDG|A Chain A, Solution Structure Of The 1st Ig Domain Of Myotilin
Length = 100
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 41/99 (41%), Gaps = 9/99 (9%)
Query: 100 PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPS-----RSLQ 154
P I+ P++ ++ + V G V W G + D + + SL
Sbjct: 6 PRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLI 65
Query: 155 LSDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRE 193
VR DAG Y C A+N G+ AT TVQ+ + +E
Sbjct: 66 FEVVRASDAGAYACVAKNRAGE----ATFTVQLDVLAKE 100
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 6/90 (6%)
Query: 293 PPVILFGPANQTLPLRSEARLRCQVRG--EGSVQWWRGEREVGSGPR----VNVTGDGSL 346
PP + P N ++ R+ +V G V W+ R V S V+ G SL
Sbjct: 5 PPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSL 64
Query: 347 VLTDVTKEDSGEYTCVVKSPHGSASWSASL 376
+ V D+G Y CV K+ G A+++ L
Sbjct: 65 IFEVVRASDAGAYACVAKNRAGEATFTVQL 94
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
Query: 32 GHPEPTLVWKKNGHPIDFENSKRLRLVDG--TNLAIQDSRKTDDGRYQCVVKNVAGTRES 89
G P P + W NG + ++ ++ + + +L + R +D G Y CV KN AG E+
Sbjct: 31 GLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAKNRAG--EA 88
Query: 90 TDAV-LRVLVK 99
T V L VL K
Sbjct: 89 TFTVQLDVLAK 99
>pdb|2EDW|A Chain A, Solution Structure Of The I-Set Domain (3537-3630) Of
Human Obscurin
Length = 107
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Query: 293 PPVILFGPANQTLPLRSEARLRCQVRGEGSVQWWRGEREVGSGPRVNVTGDGS---LVLT 349
P + NQ + A L+C++ V+W +G + G R ++ DG+ L +
Sbjct: 8 PARFIEDVKNQEAREGATAVLQCELNSAAPVEWRKGSETLRDGDRYSLRQDGTKCELQIR 67
Query: 350 DVTKEDSGEYTCVVKSPHGSA 370
+ D+GEY+CV SA
Sbjct: 68 GLAMADTGEYSCVCGQERTSA 88
>pdb|3SO5|A Chain A, Crystal Structure Of An Immunoglobulin I-Set Domain Of
Lrig3 Protein (Lrig3) From Mus Musculus At 1.70 A
Resolution
pdb|3SO5|B Chain B, Crystal Structure Of An Immunoglobulin I-Set Domain Of
Lrig3 Protein (Lrig3) From Mus Musculus At 1.70 A
Resolution
Length = 112
Score = 35.8 bits (81), Expect = 0.13, Method: Composition-based stats.
Identities = 27/100 (27%), Positives = 40/100 (40%), Gaps = 10/100 (10%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEP-TLVWKKNGHPI---DFENSKRLRLVDG-- 60
+ VQP++Q G C P T W + + + EN LR G
Sbjct: 12 QITVQPETQSAIXGSDVSFTCSAASSSDSPXTFAWXXDNEALQDAEXENYAHLRAQGGEL 71
Query: 61 ----TNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRV 96
T L +++ T +G YQCV+ N G+ S A L +
Sbjct: 72 XEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTI 111
>pdb|2CQV|A Chain A, Solution Structure Of The Eighth Ig-Like Domain Of Human
Myosin Light Chain Kinase
Length = 114
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 38/94 (40%), Gaps = 4/94 (4%)
Query: 100 PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPE-DRMSVLPSRS---LQL 155
P II+ P+D V A + V G +T W + + E + M V S + L +
Sbjct: 8 PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTI 67
Query: 156 SDVRLEDAGEYVCEAENAVGKISASATLTVQMAP 189
R E G Y EN +G A LTV P
Sbjct: 68 LAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKP 101
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Query: 12 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPI-DFENSKRLRLVDGTNLAIQDSRK 70
P+ Q+V AG++ L G G T W K I + E+ K +G+ L I +R+
Sbjct: 14 PEDQKVRAGESVEL-FGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQ 72
Query: 71 TDDGRYQCVVKNVAGTRESTDAVLRVLVKP 100
G Y +V+N G+R++ L V+ KP
Sbjct: 73 EHCGCYTLLVENKLGSRQA-QVNLTVVDKP 101
>pdb|2CPC|A Chain A, Solution Structure Of Rsgi Ruh-030, An Ig Like Domain From
Human Cdna
Length = 113
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 8/64 (12%)
Query: 131 VHWKRLGSAMPEDRMSVLPS----RSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQ 186
V W + G + E +L R L L V+LED+GEY+CE ++ SAS T+TV
Sbjct: 44 VRWTKDGEEVVESPALLLQKEDTVRRLVLPAVQLEDSGEYLCEIDDE----SASFTVTVT 99
Query: 187 MAPI 190
P+
Sbjct: 100 EPPV 103
>pdb|2ED7|A Chain A, Solution Structure Of The First Fibronectin Type Iii
Domain Of Human Netrin Receptor Dcc
Length = 119
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 7/98 (7%)
Query: 645 PQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVG--GGNNSALINMTVSASTPTLL 702
P+ PVL+++ V L W+PP G I+T+ + G N +N T S L
Sbjct: 21 PRDVVPVLVSSRFVRLSWRPP--AEAKGNIQTFTVFFSREGDNRERALNTTQPGSL-QLT 77
Query: 703 LTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGPE 740
+ NL Y+ + A N G G S+P + + + PE
Sbjct: 78 VGNLKPEAMYTFRVVAYNEWGPGESSQP--IKVATQPE 113
>pdb|3KNB|A Chain A, Crystal Structure Of The Titin C-Terminus In Complex With
Obscurin- Like 1
pdb|3Q5O|A Chain A, Crystal Structure Of Human Titin Domain M10
pdb|3Q5O|B Chain B, Crystal Structure Of Human Titin Domain M10
Length = 100
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 5/99 (5%)
Query: 187 MAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITS 246
+ P + PSD+ ++ G+ C G P P W G + R +I+ +
Sbjct: 4 IPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRF-HIE---NT 59
Query: 247 DGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTV 285
D + L I +V + L L LG N GSD A ++ +
Sbjct: 60 DDLTTLIIMDVQKQDGGLYTLSLG-NEFGSDSATVNIHI 97
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 7/98 (7%)
Query: 290 PNPPPVILFGPANQTLPLRSEARLRCQVRGEGS--VQWWRGEREVGSGPR----VNVTGD 343
P PP I P++ ++ + C GE + V W G R++ S + + T D
Sbjct: 2 PGIPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDD 61
Query: 344 -GSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFES 380
+L++ DV K+D G YT + + GS S + ++ S
Sbjct: 62 LTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHIRS 99
>pdb|1FNA|A Chain A, Crystal Structure Of The Tenth Type Iii Cell Adhesion
Module Of Human Fibronectin
Length = 91
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Query: 656 TSVLLKWKPPPVGTHNGVIRTYQIIVG-GGNNSALINMTVSASTPTLLLTNLSAGIRYSV 714
TS+L+ W P V +R Y+I G G NS + TV S T ++ L G+ Y++
Sbjct: 11 TSLLISWDAPAV-----TVRYYRITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTI 65
Query: 715 SLAATNRAGTGPYS 728
++ A G P S
Sbjct: 66 TVYAVTGRGDSPAS 79
>pdb|2WP3|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWK|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig F17r
Mutant Complex
pdb|2WWM|D Chain D, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2Y9R|T Chain T, Crystal Structure Of The M10 Domain Of Titin
Length = 102
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 41/97 (42%), Gaps = 5/97 (5%)
Query: 189 PIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDG 248
P + PSD+ ++ G+ C G P P W G + R +I+ +D
Sbjct: 8 PKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRF-HIE---NTDD 63
Query: 249 MNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTV 285
+ L I +V + L L LG N GSD A ++ +
Sbjct: 64 LTTLIIMDVQKQDGGLYTLSLG-NEFGSDSATVNIHI 99
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 45/95 (47%), Gaps = 7/95 (7%)
Query: 293 PPVILFGPANQTLPLRSEARLRCQVRGEGS--VQWWRGEREVGSGPR----VNVTGD-GS 345
PP I P++ ++ + C GE + V W G R++ S + + T D +
Sbjct: 7 PPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTT 66
Query: 346 LVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFES 380
L++ DV K+D G YT + + GS S + ++ S
Sbjct: 67 LIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHIRS 101
>pdb|2OCF|D Chain D, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Estradiol And The E2#23 Fn3 Monobody
Length = 121
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 642 SGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVG-GGNNSALINMTVSASTPT 700
S VP + V TS+L+ W P V +R Y+I G G NS + TV S T
Sbjct: 29 SDVPTKLEVVAATPTSLLISWDAPAV-----TVRYYRITYGETGGNSPVQEFTVPGSKST 83
Query: 701 LLLTNLSAGIRYSVSLAA 718
++ L G+ Y++++ A
Sbjct: 84 ATISGLKPGVDYTITVYA 101
>pdb|2EDL|A Chain A, Solution Structure Of The Ig-Like Domain (3801-3897) Of
Human Obscurin
Length = 110
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 293 PPVILFGPANQTLPLRSEARLRCQVRGEGSVQWWRGEREVGSGPRVNVTGDGS---LVLT 349
P + NQ + A L+C++ V+W +G + G R ++ DG+ L +
Sbjct: 8 PARFIEDVKNQEAREGATAVLQCELSKAAPVEWRKGSETLRGGDRYSLRQDGTRCELQIH 67
Query: 350 DVTKEDSGEYTCVVKSPHGSAS 371
++ D+GEY+CV SA+
Sbjct: 68 GLSVADTGEYSCVCGQERTSAT 89
>pdb|2CK2|A Chain A, Structure Of Core-Swapped Mutant Of Fibronectin
pdb|2CK2|B Chain B, Structure Of Core-Swapped Mutant Of Fibronectin
Length = 96
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 7/96 (7%)
Query: 642 SGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVG-GGNNSALINMTVSASTPT 700
S VP+ + V + TS L+ W P V IR ++ G G NS + +T+ S T
Sbjct: 2 SDVPRDIEVVAVTPTSALISWDAPAV-----TIRYIRLTYGETGGNSPVQEITLPGSKST 56
Query: 701 LLLTNLSAGIRYSVSLAATNRAGTGPY-SRPALLSL 735
++ L G Y+V+L + G P S+PA ++
Sbjct: 57 YTISGLKPGTDYTVTLYSVTGRGDSPASSKPASINF 92
>pdb|2IFG|A Chain A, Structure Of The Extracellular Segment Of Human Trka In
Complex With Nerve Growth Factor
pdb|2IFG|B Chain B, Structure Of The Extracellular Segment Of Human Trka In
Complex With Nerve Growth Factor
Length = 347
Score = 34.3 bits (77), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 49/125 (39%), Gaps = 13/125 (10%)
Query: 108 DTTVSASSIIVFECSVGGDAVLTVHW--KRLGSAMPEDRMSVLPSRSLQLSDVRLE-DAG 164
+ +V ++ C V G + W L + + LPS L L++V + +
Sbjct: 167 NASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRK 226
Query: 165 EYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLC---GIEGSPPPSTF 221
C AEN VG+ S + V P+ ++L + C ++G P PS
Sbjct: 227 NVTCWAENDVGRAEVSVQVNVSF-------PASVQLHTAVEMHHWCIPFSVDGQPAPSLR 279
Query: 222 WMLEG 226
W+ G
Sbjct: 280 WLFNG 284
>pdb|3K2M|C Chain C, Crystal Structure Of Monobody Ha4ABL1 SH2 DOMAIN COMPLEX
pdb|3K2M|D Chain D, Crystal Structure Of Monobody Ha4ABL1 SH2 DOMAIN COMPLEX
Length = 101
Score = 33.9 bits (76), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 642 SGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVG-GGNNSALINMTVSASTPT 700
S VP + V TS+L+ W P + + Y+I G G NS + TV S+ T
Sbjct: 5 SSVPTKLEVVAATPTSLLISWDAP---MSSSSVYYYRITYGETGGNSPVQEFTVPYSSST 61
Query: 701 LLLTNLSAGIRYSVSLAA 718
++ LS G+ Y++++ A
Sbjct: 62 ATISGLSPGVDYTITVYA 79
>pdb|3VH8|G Chain G, Kir3dl1 In Complex With Hla-B5701
pdb|3VH8|H Chain H, Kir3dl1 In Complex With Hla-B5701
Length = 316
Score = 33.9 bits (76), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 10/63 (15%)
Query: 345 SLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNI----GFFRAPEPSTYPGP 400
S ++ VT +G YTC PH WSA P+NP + G R P +PGP
Sbjct: 75 SFNMSPVTTAHAGNYTCRGSHPHSPTGWSA------PSNPVVIMVTGNHRKPSLLAHPGP 128
Query: 401 PTK 403
K
Sbjct: 129 LVK 131
>pdb|1L6Z|A Chain A, Crystal Structure Of Murine Ceacam1a[1,4]: A Coronavirus
Receptor And Cell Adhesion Molecule In The Cea Family
Length = 216
Score = 33.9 bits (76), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 321 GSVQWWRGEREVGSGPRVNVTGDGSLVLTD-VTKEDSGEYTCVVKSPHGSASWSASLRFE 379
++QW + + R+ ++ + S++ D + +ED+GEY C + +P S S S++ +
Sbjct: 139 ANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNP-VSVRRSNSIKLD 197
Query: 380 SPTNP 384
+P
Sbjct: 198 IIFDP 202
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Query: 108 DTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMP-EDRMSVLPSRS-LQLSDVRLEDAGE 165
+TTV + C + D + W ++ +RM++ + S L++ ++ EDAGE
Sbjct: 119 NTTVKELDSVTLTC-LSNDIGANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGE 177
Query: 166 YVCEAENAVG-KISASATLTVQMAP 189
Y CE N V + S S L + P
Sbjct: 178 YQCEISNPVSVRRSNSIKLDIIFDP 202
>pdb|1GL4|B Chain B, Nidogen-1 G2PERLECAN IG3 COMPLEX
Length = 98
Score = 33.9 bits (76), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 14/78 (17%)
Query: 117 IVFECSVGGDA-VLTVHWKRLGSAMPEDRMSVLPSRS------LQLSDVRLEDAGEYVCE 169
+ F C+ + T+ W RL + LPSR+ L + +V+ DAG YVC
Sbjct: 28 VTFICTAKSKSPAYTLVWTRLHNGK-------LPSRAMDFNGILTIRNVQPSDAGTYVCT 80
Query: 170 AENAVGKISASATLTVQM 187
N +ATL VQ+
Sbjct: 81 GSNMFAMDQGTATLHVQV 98
>pdb|4FRW|A Chain A, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|B Chain B, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|C Chain C, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|D Chain D, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|E Chain E, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|F Chain F, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
Length = 218
Score = 33.5 bits (75), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 34/78 (43%), Gaps = 17/78 (21%)
Query: 343 DGSLVLTDVTKEDSGEYTCVVKS-PHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPP 401
DGS++L + + D GEY C V + P GS LR P P PS PGP
Sbjct: 78 DGSVLLRNAVQADEGEYECRVSTFPAGSFQARLRLRVLVP----------PLPSLNPGP- 126
Query: 402 TKPTLVNQTANGLTLAWS 419
+ GLTLA S
Sbjct: 127 -----ALEEGQGLTLAAS 139
>pdb|2BK8|A Chain A, M1 Domain From Titin
Length = 97
Score = 33.5 bits (75), Expect = 0.56, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 323 VQWWRGEREVGSGPRVNVT---GDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASL 376
V W+ G R++ + + +T G L + D+TK D G Y C V + +G S A L
Sbjct: 34 VTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGEDSSYAEL 90
>pdb|2EDY|A Chain A, Solution Structures Of The Fn3 Domain Of Human Receptor-
Type Tyrosine-Protein Phosphatase F
Length = 103
Score = 33.5 bits (75), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 5/85 (5%)
Query: 653 LNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSA-LINMTVSASTPTLLLTNLSAGIR 711
L ++ L W PP + NG I +Y ++ N+ L N+T LT L
Sbjct: 20 LTTSTTELAWDPPVLAERNGRIISYTVVFRDINSQQELQNITTDTR---FTLTGLKPDTT 76
Query: 712 YSVSLAATNRAGTGPYSRPALLSLT 736
Y + + A G+GP S P++ S T
Sbjct: 77 YDIKVRAWTSKGSGPLS-PSIQSRT 100
>pdb|3V6B|R Chain R, Vegfr-2VEGF-E Complex Structure
Length = 424
Score = 33.1 bits (74), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 32 GHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKN-VAGTREST 90
G+P P + W KNG P++ ++ + G L I + + D G Y ++ N ++ ++S
Sbjct: 226 GYPPPEIKWYKNGIPLESNHTIKA----GHVLTIMEVSERDTGNYTVILTNPISKEKQSH 281
Query: 91 DAVLRVLVKPYI 102
L V V P I
Sbjct: 282 VVSLVVYVPPQI 293
>pdb|1X5L|A Chain A, Solution Structure Of The Second Fn3 Domain Of Eph
Receptor A8 Protein
Length = 111
Score = 33.1 bits (74), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Query: 656 TSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRYSVS 715
TSV L W+ P NG+I Y+I + T+ A T ++ L G RY
Sbjct: 25 TSVSLLWQEPE--QPNGIILEYEIKYYEKDKEMQSYSTLKAVTTRATVSGLKPGTRYVFQ 82
Query: 716 LAATNRAGTGPYSR 729
+ A AG G +S+
Sbjct: 83 VRARTSAGCGRFSQ 96
>pdb|2E7C|A Chain A, Solution Structure Of The 6th Ig-Like Domain From Human
Myosin-Binding Protein C, Fast-Type
Length = 118
Score = 32.7 bits (73), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Query: 29 PPRGHPEPTLVWKKNGHPIDFENSKRLRLVD-GTNLAIQDSRKTDDGRYQCVVKNVAGTR 87
P +G P P +VW K G P+D + +R D T ++ + ++D G Y+ V+ + +
Sbjct: 47 PFQGKPRPQVVWTKGGAPLD-TSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQ-IENMK 104
Query: 88 ESTDAVLRVLVK 99
++ +RV+ K
Sbjct: 105 DTATIRIRVVEK 116
>pdb|3C6L|B Chain B, Crystal Structure Of Mouse Mhc Class Ii I-Ab3K PEPTIDE
Complexed With Mouse Tcr 2w20
pdb|3C6L|F Chain F, Crystal Structure Of Mouse Mhc Class Ii I-Ab3K PEPTIDE
Complexed With Mouse Tcr 2w20
Length = 236
Score = 32.7 bits (73), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 289 DPNPPPVILFGPANQTLPLRSEARLRCQVRG----EGSVQWWRGEREVGSG 335
D PP V LF P+ + + +A L C RG + WW +EV SG
Sbjct: 115 DVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVHSG 165
>pdb|3UYO|D Chain D, Crystal Structure Of Monobody Sh13ABL1 SH2 DOMAIN COMPLEX
Length = 95
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
Query: 642 SGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVG-GGNNSALINMTVSASTPT 700
S VP + V TS+L+ W P V + Y I G G NS + TV S T
Sbjct: 4 SSVPTKLEVVAATPTSLLISWDAPAV-----TVDFYVITYGETGGNSPVQEFTVPGSKST 58
Query: 701 LLLTNLSAGIRYSVSLAA 718
++ LS G+ Y++++ A
Sbjct: 59 ATISGLSPGVDYTITVYA 76
>pdb|2EDT|A Chain A, Solution Structure Of The Ig-Like Domain (3449-3537) From
Human Obscurin
Length = 102
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 10/83 (12%)
Query: 299 GPANQTLPLRSE-------ARLRCQVRGEGSVQWWRGEREVGSGPRVNVTGDGS---LVL 348
GPA T LR+E A L C++ V+W +G + G R + +G+ L +
Sbjct: 7 GPAKFTEGLRNEEAVEGATAMLWCELSKVAPVEWRKGPENLRDGDRYILRQEGTRCELQI 66
Query: 349 TDVTKEDSGEYTCVVKSPHGSAS 371
+ D+GEY CV SA+
Sbjct: 67 CGLAMADAGEYLCVCGQERTSAT 89
Score = 30.4 bits (67), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
Query: 153 LQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAP 189
LQ+ + + DAGEY+C G+ SATLT++ P
Sbjct: 64 LQICGLAMADAGEYLC----VCGQERTSATLTIRALP 96
>pdb|3O3U|N Chain N, Crystal Structure Of Human Receptor For Advanced Glycation
Endproducts (Rage)
Length = 581
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 6/86 (6%)
Query: 147 VLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASA----TLTVQMAPIVRERPSDLRLEV 202
VLP+ SL L V ++D G + C+A N GK + S + P + + S+L V
Sbjct: 428 VLPNGSLFLPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQIPGKPEIVDSASELTAGV 487
Query: 203 GRDAVFLCGIEGSPPPSTF-WMLEGN 227
+ V C EGS P T W L+G
Sbjct: 488 -PNKVGTCVSEGSYPAGTLSWHLDGK 512
>pdb|2ILL|A Chain A, Anomalous Substructure Of Titin-A168169
Length = 195
Score = 32.7 bits (73), Expect = 1.1, Method: Composition-based stats.
Identities = 47/200 (23%), Positives = 72/200 (36%), Gaps = 35/200 (17%)
Query: 187 MAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITS 246
MAP +E +L + +A +C + G P P W +G EI +
Sbjct: 1 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGK---------------EIIA 45
Query: 247 DGMNLLKIQNVSRTAAPLIILCL-----------GVNAAGSDLARASLTVSGPDPNPPPV 295
DG+ +IQ LII + N GS ASL V P P
Sbjct: 46 DGLK-YRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPK 104
Query: 296 ILFGPANQTLPLRSEA---RLRCQVRGEGSVQWWRGEREVGSGPRVNVT---GDGSLVLT 349
L G LR E ++ + + + W +G+ + + V SLV
Sbjct: 105 TLEG-MGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFP 163
Query: 350 D-VTKEDSGEYTCVVKSPHG 368
+ V ++D+G Y K+ G
Sbjct: 164 NGVERKDAGFYVVCAKNRFG 183
>pdb|2DLH|A Chain A, Solution Structure Of The Second Fn3 Domain Of Human
Receptor-Type Tyrosine-Protein Phosphatase Delta
Length = 121
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 4/96 (4%)
Query: 635 RTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTV 694
+T E PS P+ +L++T++L++WK P NG I+ Y++ + N
Sbjct: 12 QTSEQAPSSAPRDVQARMLSSTTILVQWKEPE--EPNGQIQGYRVYYTMDPTQHVNNWMK 69
Query: 695 S--ASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYS 728
A + + NL YSV + A G GP S
Sbjct: 70 HNVADSQITTIGNLVPQKTYSVKVLAFTSIGDGPLS 105
>pdb|4FQP|A Chain A, Crystal Structure Of Human Nectin-Like 5 Full Ectodomain
(D1-D3)
Length = 313
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 37/102 (36%), Gaps = 9/102 (8%)
Query: 49 FENSKRLRLV--------DGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKP 100
+ SKRL V +L + R D+G Y C+ S D LRVL KP
Sbjct: 59 YSESKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKP 118
Query: 101 YIIRGPKDTTVSASSIIVFEC-SVGGDAVLTVHWKRLGSAMP 141
+ ++ + + C S GG + W MP
Sbjct: 119 QNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMP 160
>pdb|2EDE|A Chain A, Solution Structure Of The Sixth Fibronectin Type Iii
Domain Of Human Netrin Receptor Dcc
Length = 114
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 37/88 (42%), Gaps = 7/88 (7%)
Query: 657 SVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSAL---INMTVSASTPTLLLTNLSAGIRYS 713
+V++ W+PP NG I Y + N + I T+S T + +L+ Y
Sbjct: 26 AVIVSWQPP--LEANGKITAYILFYTLDKNIPIDDWIMETISGDRLTHQIMDLNLDTMYY 83
Query: 714 VSLAATNRAGTGPYSRPALLSL--TSGP 739
+ A N G GP S P L SGP
Sbjct: 84 FRIQARNSKGVGPLSDPILFRTLKVSGP 111
>pdb|3MBE|D Chain D, Tcr 21.30 In Complex With Mhc Class Ii I-Ag7hel(11-27)
pdb|3MBE|H Chain H, Tcr 21.30 In Complex With Mhc Class Ii I-Ag7hel(11-27)
Length = 259
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 292 PPPVILFGPANQTLPLRSEARLRCQVRG----EGSVQWWRGEREVGSG 335
PP V LF P+ + + +A L C RG + WW +EV SG
Sbjct: 121 PPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVHSG 168
>pdb|2EDQ|A Chain A, Solution Structure Of The Ig-Like Domain (3713-3806) Of
Human Obscurin
Length = 107
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 311 ARLRCQVRGEGSVQWWRGEREVGSGPRVNVTGDGS---LVLTDVTKEDSGEYTCVVKSPH 367
A L C++ V+W +G + G R ++ DGS L + + D+GEY+CV
Sbjct: 26 ATLWCELSKAAPVEWRKGHETLRDGDRHSLRQDGSRCELQIRGLAVVDAGEYSCVCGQER 85
Query: 368 GSAS 371
SA+
Sbjct: 86 TSAT 89
>pdb|2DBJ|A Chain A, Solution Structures Of The Fn3 Domain Of Human Proto-
Oncogene Tyrosine-Protein Kinase Mer Precursor
Length = 124
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 50/123 (40%), Gaps = 33/123 (26%)
Query: 636 TLECEPSGVPQLTDPVLLNATS--VLLKWKPPPVGTHNGVIRTYQII------------- 680
T E PS P L V LN +S V ++W PP +G + Y+I
Sbjct: 13 TTEGAPSVAP-LNVTVFLNESSDNVDIRWMKPPTKQQDGELVGYRISHVWQSAGISKELL 71
Query: 681 --VGGGNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSL--T 736
VG + A I++ V +T T V +AA R G GP+S P + +
Sbjct: 72 EEVGQNGSRARISVQVHNATCT-------------VRIAAVTRGGVGPFSDPVKIFIPAH 118
Query: 737 SGP 739
SGP
Sbjct: 119 SGP 121
>pdb|1LP9|F Chain F, Xenoreactive Complex Ahiii 12.2 Tcr Bound To P1049HLA-A2.1
pdb|1LP9|M Chain M, Xenoreactive Complex Ahiii 12.2 Tcr Bound To P1049HLA-A2.1
pdb|2J8U|F Chain F, Large Cdr3a Loop Alteration As A Function Of Mhc Mutation.
pdb|2J8U|M Chain M, Large Cdr3a Loop Alteration As A Function Of Mhc Mutation.
pdb|2JCC|F Chain F, Ah3 Recognition Of Mutant Hla-A2 W167a
pdb|2JCC|M Chain M, Ah3 Recognition Of Mutant Hla-A2 W167a
pdb|2UWE|F Chain F, Large Cdr3a Loop Alteration As A Function Of Mhc Mutation
pdb|2UWE|M Chain M, Large Cdr3a Loop Alteration As A Function Of Mhc Mutation
Length = 238
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 292 PPPVILFGPANQTLPLRSEARLRCQVRG----EGSVQWWRGEREVGSG 335
PP V LF P+ + + +A L C RG + WW +EV SG
Sbjct: 121 PPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVHSG 168
>pdb|3S58|A Chain A, Rage Recognizes Nucleic Acids And Promotes Inflammatory
Responses To Dna
pdb|3S58|B Chain B, Rage Recognizes Nucleic Acids And Promotes Inflammatory
Responses To Dna
pdb|3S59|A Chain A, Rage Recognizes Nucleic Acids And Promotes Inflammatory
Responses To Dna
pdb|3S59|B Chain B, Rage Recognizes Nucleic Acids And Promotes Inflammatory
Responses To Dna
Length = 223
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 6/86 (6%)
Query: 147 VLPSRSLQLSDVRLEDAGEYVCEAENAVGKISAS----ATLTVQMAPIVRERPSDLRLEV 202
VLP+ SL L V ++D G + C+A N GK + S + P + + S+L V
Sbjct: 60 VLPNGSLFLPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQIPGKPEIVDSASELTAGV 119
Query: 203 GRDAVFLCGIEGSPPPSTF-WMLEGN 227
+ V C EGS P T W L+G
Sbjct: 120 P-NKVGTCVSEGSYPAGTLSWHLDGK 144
>pdb|3ALP|A Chain A, Cell Adhesion Protein
pdb|3ALP|B Chain B, Cell Adhesion Protein
pdb|3U83|A Chain A, Crystal Structure Of Nectin-1
Length = 331
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 52/123 (42%), Gaps = 13/123 (10%)
Query: 107 KDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEY 166
K T S ++ ++ S+G +VL + +R+ P +++LS + LED G Y
Sbjct: 54 KSTNGSKQNVAIYNPSMGV-SVLAPYRERVEFLRPS-----FTDGTIRLSRLELEDEGVY 107
Query: 167 VCE-AENAVGKISASATLTVQMAPI--VRERPSDLRLEVGRDAVFLCGI----EGSPPPS 219
+CE A G + LTV P + + LR + G+D L G PP
Sbjct: 108 ICEFATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSV 167
Query: 220 TFW 222
W
Sbjct: 168 VSW 170
>pdb|3MJ6|A Chain A, Crystal Structure Of The Gammadelta T Cell Costimulatory
Receptor Junctional Adhesion Molecule-Like Protein, Jaml
pdb|3MJ7|A Chain A, Crystal Structure Of The Complex Of Jaml And Coxsackie And
Adenovirus Receptor, Car
pdb|3MJ9|A Chain A, Crystal Structure Of Jaml In Complex With The Stimulatory
Antibody Hl4e10
Length = 268
Score = 32.0 bits (71), Expect = 1.5, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Query: 152 SLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCG 211
SL L DV+ D G Y CE + + + + P E P DLR+ VG C
Sbjct: 85 SLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLP---EEPRDLRVRVGDTTQMRCS 141
Query: 212 IEGS 215
I+ +
Sbjct: 142 IQST 145
Score = 31.6 bits (70), Expect = 2.2, Method: Composition-based stats.
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 343 DGSLVLTDVTKEDSGEYTCVVK 364
DGSL+L DV K D G YTC ++
Sbjct: 83 DGSLLLQDVQKADEGIYTCEIR 104
>pdb|2J8H|A Chain A, Structure Of The Immunoglobulin Tandem Repeat A168-A169 Of
Titin
pdb|2J8O|A Chain A, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
pdb|2J8O|B Chain B, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
Length = 197
Score = 32.0 bits (71), Expect = 1.5, Method: Composition-based stats.
Identities = 47/200 (23%), Positives = 72/200 (36%), Gaps = 35/200 (17%)
Query: 187 MAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITS 246
MAP +E +L + +A +C + G P P W +G EI +
Sbjct: 3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGK---------------EIIA 47
Query: 247 DGMNLLKIQNVSRTAAPLIILCL-----------GVNAAGSDLARASLTVSGPDPNPPPV 295
DG+ +IQ LII + N GS ASL V P P
Sbjct: 48 DGLK-YRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPK 106
Query: 296 ILFGPANQTLPLRSEA---RLRCQVRGEGSVQWWRGEREVGSGPRVNVT---GDGSLVLT 349
L G LR E ++ + + + W +G+ + + V SLV
Sbjct: 107 TLEG-MGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFP 165
Query: 350 D-VTKEDSGEYTCVVKSPHG 368
+ V ++D+G Y K+ G
Sbjct: 166 NGVERKDAGFYVVCAKNRFG 185
>pdb|3SKU|E Chain E, Herpes Simplex Virus Glycoprotein D Bound To The Human
Receptor Nectin-1
pdb|3SKU|D Chain D, Herpes Simplex Virus Glycoprotein D Bound To The Human
Receptor Nectin-1
pdb|3SKU|F Chain F, Herpes Simplex Virus Glycoprotein D Bound To The Human
Receptor Nectin-1
Length = 319
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 52/123 (42%), Gaps = 13/123 (10%)
Query: 107 KDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEY 166
K T S ++ ++ S+G +VL + +R+ P +++LS + LED G Y
Sbjct: 39 KSTNGSKQNVAIYNPSMGV-SVLAPYRERVEFLRPS-----FTDGTIRLSRLELEDEGVY 92
Query: 167 VCE-AENAVGKISASATLTVQMAPI--VRERPSDLRLEVGRDAVFLCGI----EGSPPPS 219
+CE A G + LTV P + + LR + G+D L G PP
Sbjct: 93 ICEFATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSV 152
Query: 220 TFW 222
W
Sbjct: 153 VSW 155
>pdb|3URO|R Chain R, Poliovirus Receptor Cd155 D1d2
Length = 221
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 38/103 (36%), Gaps = 9/103 (8%)
Query: 49 FENSKRLRLVDG--------TNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKP 100
+ SKRL V +L + R D+G Y C+ S D LRVL KP
Sbjct: 58 YSESKRLEFVAARLGAELRDASLRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWLRVLAKP 117
Query: 101 YIIRGPKDTTVSASSIIVFEC-SVGGDAVLTVHWKRLGSAMPE 142
+ ++ + + C S GG + W MP+
Sbjct: 118 QNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPQ 160
>pdb|1DGI|R Chain R, Cryo-Em Structure Of Human Poliovirus(Serotype 1)complexed
With Three Domain Cd155
pdb|1NN8|R Chain R, Cryoem Structure Of Poliovirus Receptor Bound To
Poliovirus
pdb|1NN8|S Chain S, Cryoem Structure Of Poliovirus Receptor Bound To
Poliovirus
pdb|1NN8|T Chain T, Cryoem Structure Of Poliovirus Receptor Bound To
Poliovirus
Length = 302
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 37/102 (36%), Gaps = 9/102 (8%)
Query: 49 FENSKRLRLV--------DGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKP 100
+ SKRL V +L + R D+G Y C+ S D LRVL KP
Sbjct: 59 YSESKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKP 118
Query: 101 YIIRGPKDTTVSASSIIVFEC-SVGGDAVLTVHWKRLGSAMP 141
+ ++ + + C S GG + W MP
Sbjct: 119 QNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMP 160
>pdb|3QWR|D Chain D, Crystal Structure Of Il-23 In Complex With An Adnectin
Length = 109
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 642 SGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGG--GNNSALINMTVSASTP 699
S VP+ + V TS+L+ W+ H+ R Y I G G NS + TV
Sbjct: 4 SDVPRDLEVVAATPTSLLISWE------HDYPYRRYYRITYGETGGNSPVQEFTVPKDVD 57
Query: 700 TLLLTNLSAGIRYSVSLAA 718
T ++ L G+ Y++++ A
Sbjct: 58 TATISGLKPGVDYTITVYA 76
>pdb|3EPC|R Chain R, Cryoem Structure Of Poliovirus Receptor Bound To
Poliovirus Type 1
pdb|3EPD|R Chain R, Cryoem Structure Of Poliovirus Receptor Bound To
Poliovirus Type 3
pdb|3EPF|R Chain R, Cryoem Structure Of Poliovirus Receptor Bound To
Poliovirus Type 2
Length = 213
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 38/103 (36%), Gaps = 9/103 (8%)
Query: 49 FENSKRLRLVDG--------TNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKP 100
+ SKRL V +L + R D+G Y C+ S D LRVL KP
Sbjct: 57 YSESKRLEFVAARLGAELRDASLRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWLRVLAKP 116
Query: 101 YIIRGPKDTTVSASSIIVFEC-SVGGDAVLTVHWKRLGSAMPE 142
+ ++ + + C S GG + W MP+
Sbjct: 117 QNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPQ 159
>pdb|3CJJ|A Chain A, Crystal Structure Of Human Rage Ligand-Binding Domain
Length = 219
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 6/86 (6%)
Query: 147 VLPSRSLQLSDVRLEDAGEYVCEAENAVGKISAS----ATLTVQMAPIVRERPSDLRLEV 202
VLP+ SL L V ++D G + C+A N GK + S + P + + S+L V
Sbjct: 57 VLPNGSLFLPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQIPGKPEIVDSASELTAGV 116
Query: 203 GRDAVFLCGIEGSPPPSTF-WMLEGN 227
+ V C EGS P T W L+G
Sbjct: 117 P-NKVGTCVSEGSYPAGTLSWHLDGK 141
>pdb|2Q86|B Chain B, Structure Of The Mouse Invariant Nkt Cell Receptor
Valpha14
pdb|2Q86|D Chain D, Structure Of The Mouse Invariant Nkt Cell Receptor
Valpha14
Length = 254
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 292 PPPVILFGPANQTLPLRSEARLRCQVRG----EGSVQWWRGEREVGSG 335
PP V LF P+ + + +A L C RG + WW +EV SG
Sbjct: 118 PPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVHSG 165
>pdb|4FMF|A Chain A, Crystal Structure Of Human Nectin-1 Full Ectodomain
(D1-D3)
pdb|4FMF|B Chain B, Crystal Structure Of Human Nectin-1 Full Ectodomain
(D1-D3)
pdb|4FMF|C Chain C, Crystal Structure Of Human Nectin-1 Full Ectodomain
(D1-D3)
pdb|4FMF|D Chain D, Crystal Structure Of Human Nectin-1 Full Ectodomain
(D1-D3)
Length = 313
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 52/123 (42%), Gaps = 13/123 (10%)
Query: 107 KDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEY 166
K T S ++ ++ S+G +VL + +R+ P +++LS + LED G Y
Sbjct: 39 KSTNGSKQNVAIYNPSMGV-SVLAPYRERVEFLRPS-----FTDGTIRLSRLELEDEGVY 92
Query: 167 VCE-AENAVGKISASATLTVQMAPI--VRERPSDLRLEVGRDAVFLCGI----EGSPPPS 219
+CE A G + LTV P + + LR + G+D L G PP
Sbjct: 93 ICEFATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSV 152
Query: 220 TFW 222
W
Sbjct: 153 VSW 155
>pdb|1NBQ|A Chain A, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
pdb|1NBQ|B Chain B, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
Length = 209
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 51/140 (36%), Gaps = 37/140 (26%)
Query: 61 TNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFE 120
T + + + D G Y C+V G ++ V VK ++ P TV+ S
Sbjct: 68 TGITFKSVTREDTGTYTCMVSEEGG-----NSYGEVKVKLIVLVPPSKPTVNIPS----S 118
Query: 121 CSVGGDAVLTVH-----------WKRLGSAMPEDRMSVLPSRSLQLSDVRLE-------- 161
++G AVLT W + G MP + S +R+ S L
Sbjct: 119 ATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKS---TRAFSNSSYVLNPTTGELVF 175
Query: 162 ------DAGEYVCEAENAVG 175
D GEY CEA N G
Sbjct: 176 DPLSASDTGEYSCEARNGYG 195
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 33/82 (40%), Gaps = 8/82 (9%)
Query: 20 GDTALLECGPPRGHPEPTLVWKKNG--HPID------FENSKRLRLVDGTNLAIQDSRKT 71
G+ A+L C G P W K+G P + F NS + L +
Sbjct: 122 GNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSAS 181
Query: 72 DDGRYQCVVKNVAGTRESTDAV 93
D G Y C +N GT +++AV
Sbjct: 182 DTGEYSCEARNGYGTPMTSNAV 203
>pdb|1TCR|B Chain B, Murine T-Cell Antigen Receptor 2c Clone
pdb|2CKB|B Chain B, Structure Of The 2cKBDEV8 COMPLEX
pdb|2CKB|D Chain D, Structure Of The 2cKBDEV8 COMPLEX
pdb|1G6R|B Chain B, A Functional Hot Spot For Antigen Recognition In A
Superagonist TcrMHC COMPLEX
pdb|1G6R|D Chain D, A Functional Hot Spot For Antigen Recognition In A
Superagonist TcrMHC COMPLEX
pdb|1MWA|B Chain B, 2cH-2kbm3DEV8 ALLOGENEIC COMPLEX
pdb|1MWA|D Chain D, 2cH-2kbm3DEV8 ALLOGENEIC COMPLEX
Length = 237
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 292 PPPVILFGPANQTLPLRSEARLRCQVRG----EGSVQWWRGEREVGSG 335
PP V LF P+ + + +A L C RG + WW +EV SG
Sbjct: 118 PPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVHSG 165
>pdb|3U82|B Chain B, Binding Of Herpes Simplex Virus Glycoprotein D To Nectin-1
Exploits Host Cell Adhesion
Length = 317
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 52/123 (42%), Gaps = 13/123 (10%)
Query: 107 KDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEY 166
K T S ++ ++ S+G +VL + +R+ P +++LS + LED G Y
Sbjct: 40 KSTNGSKQNVAIYNPSMGV-SVLAPYRERVEFLRPS-----FTDGTIRLSRLELEDEGVY 93
Query: 167 VCE-AENAVGKISASATLTVQMAPI--VRERPSDLRLEVGRDAVFLCGI----EGSPPPS 219
+CE A G + LTV P + + LR + G+D L G PP
Sbjct: 94 ICEFATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSV 153
Query: 220 TFW 222
W
Sbjct: 154 VSW 156
>pdb|3Q5Y|A Chain A, V BetaV BETA HOMODIMERIZATION-Based Pre-Tcr Model
Suggested By Tcr Beta Crystal Structures
pdb|3Q5Y|B Chain B, V BetaV BETA HOMODIMERIZATION-Based Pre-Tcr Model
Suggested By Tcr Beta Crystal Structures
pdb|3Q5Y|C Chain C, V BetaV BETA HOMODIMERIZATION-Based Pre-Tcr Model
Suggested By Tcr Beta Crystal Structures
pdb|3Q5Y|D Chain D, V BetaV BETA HOMODIMERIZATION-Based Pre-Tcr Model
Suggested By Tcr Beta Crystal Structures
Length = 240
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 292 PPPVILFGPANQTLPLRSEARLRCQVRG----EGSVQWWRGEREVGSG 335
PP V LF P+ + + +A L C RG + WW +EV SG
Sbjct: 121 PPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVHSG 168
>pdb|1NFD|B Chain B, An Alpha-Beta T Cell Receptor (Tcr) Heterodimer In Complex
With An Anti-Tcr Fab Fragment Derived From A Mitogenic
Antibody
pdb|1NFD|D Chain D, An Alpha-Beta T Cell Receptor (Tcr) Heterodimer In Complex
With An Anti-Tcr Fab Fragment Derived From A Mitogenic
Antibody
Length = 239
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 292 PPPVILFGPANQTLPLRSEARLRCQVRG----EGSVQWWRGEREVGSG 335
PP V LF P+ + + +A L C RG + WW +EV SG
Sbjct: 120 PPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVHSG 167
>pdb|2LQR|A Chain A, Nmr Structure Of Ig3 Domain Of Palladin
Length = 108
Score = 31.6 bits (70), Expect = 2.5, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 6/76 (7%)
Query: 117 IVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSR------SLQLSDVRLEDAGEYVCEA 170
+ F C V G+ ++W + G + R SL + L+D G Y A
Sbjct: 25 VTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMA 84
Query: 171 ENAVGKISASATLTVQ 186
N G++S + L VQ
Sbjct: 85 ANPQGRVSCTGRLMVQ 100
>pdb|1F97|A Chain A, Soluble Part Of The Junction Adhesion Molecule From Mouse
Length = 212
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 48/122 (39%), Gaps = 18/122 (14%)
Query: 70 KTDDGRYQCVVKNVAGTRESTDAV-LRVLVKPY--IIRGPKDTTVSASSIIVFECS---- 122
+ D+G Y C+V G ++ L VLV P I P T+ +++ CS
Sbjct: 74 RKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRAVLT--CSEHDG 131
Query: 123 ---------VGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENA 173
G ++LT K+ + M S L V D+GEY C+A+N
Sbjct: 132 SPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNG 191
Query: 174 VG 175
G
Sbjct: 192 YG 193
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 33/85 (38%), Gaps = 9/85 (10%)
Query: 17 VAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSR------- 69
V G+ A+L C G P W K+G + ++K+ R ++ I
Sbjct: 116 VTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDP 175
Query: 70 --KTDDGRYQCVVKNVAGTRESTDA 92
D G Y C +N GT ++A
Sbjct: 176 VTAFDSGEYYCQAQNGYGTAMRSEA 200
Score = 29.6 bits (65), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 42/116 (36%), Gaps = 32/116 (27%)
Query: 305 LPLRSEARLRCQVRGEGS--VQW------------WRGEREVGSGPRVNVTGDGSLVLTD 350
+P +L C G S V+W + + RV + G + +
Sbjct: 13 VPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSG-ITFSS 71
Query: 351 VTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTL 406
VT++D+GEYTC+V G S+ T PP+KPT+
Sbjct: 72 VTRKDNGEYTCMVSEEGGQNYGEVSIHL-----------------TVLVPPSKPTI 110
>pdb|1U2H|A Chain A, X-Ray Structure Of The N-Terminally Truncated Human
Apep-1
Length = 99
Score = 31.6 bits (70), Expect = 2.6, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG--TNLAI 65
F+V Q V G ++ +G P+P + W +N P+ + + +G L I
Sbjct: 8 FKVSLMDQSVREGQDVIMSI-RVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRI 66
Query: 66 QDSRKTDDGRYQCVVKNVAGTRE 88
+ + D G Y C N G R+
Sbjct: 67 LAAERGDAGFYTCKAVNEYGARQ 89
Score = 29.6 bits (65), Expect = 8.3, Method: Composition-based stats.
Identities = 27/99 (27%), Positives = 39/99 (39%), Gaps = 6/99 (6%)
Query: 189 PIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDG 248
P + D + G+D + ++G P P W+ NR + P R +AE G
Sbjct: 6 PTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLR--NRQPVRPDQRRFAEEAE---GG 60
Query: 249 MNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSG 287
+ L+I R A C VN G+ A L V G
Sbjct: 61 LCRLRILAAERGDAGFYT-CKAVNEYGARQCEARLEVRG 98
>pdb|2YWZ|A Chain A, Structure Of New Antigen Receptor Variable Domain From
Sharks
Length = 111
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 19/23 (82%)
Query: 149 PSRSLQLSDVRLEDAGEYVCEAE 171
S SL++SD+R+ED+G Y C+A+
Sbjct: 64 KSFSLRISDLRVEDSGTYKCQAD 86
>pdb|3F7P|C Chain C, Crystal Structure Of A Complex Between Integrin Beta4 And
Plectin
pdb|3F7P|D Chain D, Crystal Structure Of A Complex Between Integrin Beta4 And
Plectin
pdb|3F7P|E Chain E, Crystal Structure Of A Complex Between Integrin Beta4 And
Plectin
Length = 248
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 36/89 (40%), Gaps = 11/89 (12%)
Query: 643 GVPQLTDPVLLNATSVLLKWKPP---PVGTHNGVIRTYQIIVGGGNNSALINMTVSASTP 699
G PQ + + + W PP P+G R I G + A + + + P
Sbjct: 6 GAPQNPNAKAAGSRKIHFNWLPPSGKPMG-----YRVKYWIQGDSESEAHL---LDSKVP 57
Query: 700 TLLLTNLSAGIRYSVSLAATNRAGTGPYS 728
++ LTNL Y + + A G GPYS
Sbjct: 58 SVELTNLYPYCDYEMKVCAYGAQGEGPYS 86
>pdb|1JCK|A Chain A, T-Cell Receptor Beta Chain Complexed With Sec3
Superantigen
pdb|1JCK|C Chain C, T-Cell Receptor Beta Chain Complexed With Sec3
Superantigen
pdb|1SBB|A Chain A, T-Cell Receptor Beta Chain Complexed With Superantigen Seb
pdb|1SBB|C Chain C, T-Cell Receptor Beta Chain Complexed With Superantigen Seb
pdb|1L0X|A Chain A, Tcr Beta Chain Complexed With Streptococcal Superantigen
Spea
pdb|1L0X|C Chain C, Tcr Beta Chain Complexed With Streptococcal Superantigen
Spea
pdb|1BEC|A Chain A, Beta Chain Of A T Cell Antigen Receptor
Length = 238
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 292 PPPVILFGPANQTLPLRSEARLRCQVRG----EGSVQWWRGEREVGSG 335
PP V LF P+ + + +A L C RG + WW +EV SG
Sbjct: 120 PPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVHSG 167
>pdb|2Z8W|C Chain C, Structure Of An Ignar-Ama1 Complex
pdb|2Z8W|D Chain D, Structure Of An Ignar-Ama1 Complex
Length = 116
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 18/22 (81%)
Query: 149 PSRSLQLSDVRLEDAGEYVCEA 170
S SL++SD+R+ED+G Y C+A
Sbjct: 64 KSFSLRISDLRVEDSGTYKCQA 85
>pdb|3F7R|A Chain A, First Pair Of Fibronectin Type Iii Domains And Part Of The
Connecting Segment Of The Integrin Beta4
Length = 249
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 36/89 (40%), Gaps = 11/89 (12%)
Query: 643 GVPQLTDPVLLNATSVLLKWKPP---PVGTHNGVIRTYQIIVGGGNNSALINMTVSASTP 699
G PQ + + + W PP P+G R I G + A + + + P
Sbjct: 7 GAPQNPNAKAAGSRKIHFNWLPPSGKPMG-----YRVKYWIQGDSESEAHL---LDSKVP 58
Query: 700 TLLLTNLSAGIRYSVSLAATNRAGTGPYS 728
++ LTNL Y + + A G GPYS
Sbjct: 59 SVELTNLYPYCDYEMKVCAYGAQGEGPYS 87
>pdb|1VES|A Chain A, Structure Of New Antigen Receptor Variable Domain From
Sharks
pdb|1VES|B Chain B, Structure Of New Antigen Receptor Variable Domain From
Sharks
Length = 113
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 18/22 (81%)
Query: 149 PSRSLQLSDVRLEDAGEYVCEA 170
S SL++SD+R+ED+G Y C+A
Sbjct: 64 KSFSLRISDLRVEDSGTYKCQA 85
>pdb|3F7Q|A Chain A, First Pair Of Fibronectin Type Iii Domains And Part Of The
Connecting Segment Of The Integrin Beta4
pdb|3F7Q|B Chain B, First Pair Of Fibronectin Type Iii Domains And Part Of The
Connecting Segment Of The Integrin Beta4
Length = 234
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 36/89 (40%), Gaps = 11/89 (12%)
Query: 643 GVPQLTDPVLLNATSVLLKWKPP---PVGTHNGVIRTYQIIVGGGNNSALINMTVSASTP 699
G PQ + + + W PP P+G R I G + A + + + P
Sbjct: 7 GAPQNPNAKAAGSRKIHFNWLPPSGKPMG-----YRVKYWIQGDSESEAHL---LDSKVP 58
Query: 700 TLLLTNLSAGIRYSVSLAATNRAGTGPYS 728
++ LTNL Y + + A G GPYS
Sbjct: 59 SVELTNLYPYCDYEMKVCAYGAQGEGPYS 87
>pdb|2QBW|A Chain A, The Crystal Structure Of Pdz-Fibronectin Fusion Protein
Length = 195
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 7/89 (7%)
Query: 642 SGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVG-GGNNSALINMTVSASTPT 700
S VP + V TS+L+ W G + Y+I G G NS + TV S+ T
Sbjct: 104 SSVPTNLEVVAATPTSLLISWDASYYG-----VSYYRITYGETGGNSPVQEFTVPYSSST 158
Query: 701 LLLTNLSAGIRYSVSL-AATNRAGTGPYS 728
++ L G+ Y++++ A ++ G+ YS
Sbjct: 159 ATISGLKPGVDYTITVYAYSDYYGSHHYS 187
>pdb|2JIX|B Chain B, Crystal Structure Of Abt-007 Fab Fragment With The Soluble
Domain Of Epo Receptor
pdb|2JIX|C Chain C, Crystal Structure Of Abt-007 Fab Fragment With The Soluble
Domain Of Epo Receptor
pdb|2JIX|E Chain E, Crystal Structure Of Abt-007 Fab Fragment With The Soluble
Domain Of Epo Receptor
Length = 225
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 658 VLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALIN-MTVSASTPTLLLTNLSAGIRYSVSL 716
V+L+W PPP IR Y++ V GN + + + + +L+NL RY+ ++
Sbjct: 138 VVLRWLPPPETPMTSHIR-YEVDVSAGNGAGSVQRVEILEGRTECVLSNLRGRTRYTFAV 196
Query: 717 AA 718
A
Sbjct: 197 RA 198
>pdb|1EBP|A Chain A, Complex Between The Extracellular Domain Of Erythropoietin
(Epo) Receptor [ebp] And An Agonist Peptide [emp1]
pdb|1EBP|B Chain B, Complex Between The Extracellular Domain Of Erythropoietin
(Epo) Receptor [ebp] And An Agonist Peptide [emp1]
Length = 211
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 658 VLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALIN-MTVSASTPTLLLTNLSAGIRYSVSL 716
V+L+W PPP IR Y++ V GN + + + + +L+NL RY+ ++
Sbjct: 129 VVLRWLPPPETPMTSHIR-YEVDVSAGNGAGSVQRVEILEGRTECVLSNLRGRTRYTFAV 187
Query: 717 AA 718
A
Sbjct: 188 RA 189
>pdb|1ERN|A Chain A, Native Structure Of The Extracellular Domain Of
Erythropoietin (Epo) Receptor [ebp]
pdb|1ERN|B Chain B, Native Structure Of The Extracellular Domain Of
Erythropoietin (Epo) Receptor [ebp]
Length = 213
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 658 VLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALIN-MTVSASTPTLLLTNLSAGIRYSVSL 716
V+L+W PPP IR Y++ V GN + + + + +L+NL RY+ ++
Sbjct: 129 VVLRWLPPPETPMTSHIR-YEVDVSAGNGAGSVQRVEILEGRTECVLSNLRGRTRYTFAV 187
Query: 717 AA 718
A
Sbjct: 188 RA 189
>pdb|1L0Y|A Chain A, T Cell Receptor Beta Chain Complexed With Superantigen
Spea Soaked With Zinc
pdb|1L0Y|C Chain C, T Cell Receptor Beta Chain Complexed With Superantigen
Spea Soaked With Zinc
Length = 236
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 292 PPPVILFGPANQTLPLRSEARLRCQVRG----EGSVQWWRGEREVGSG 335
PP V LF P+ + + +A L C RG + WW +EV SG
Sbjct: 120 PPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVHSG 167
>pdb|2Z8V|C Chain C, Structure Of An Ignar-Ama1 Complex
pdb|2Z8V|D Chain D, Structure Of An Ignar-Ama1 Complex
Length = 116
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 18/22 (81%)
Query: 149 PSRSLQLSDVRLEDAGEYVCEA 170
S SL++SD+R+ED+G Y C+A
Sbjct: 64 KSFSLRISDLRVEDSGTYKCQA 85
>pdb|1EBA|A Chain A, Complex Between The Extracellular Domain Of Erythropoietin
(Epo) Receptor [ebp] And An Inactive Peptide [emp33]
Contains 3,5-Dibromotyrosine In Position 4 (Denoted Dby)
pdb|1EBA|B Chain B, Complex Between The Extracellular Domain Of Erythropoietin
(Epo) Receptor [ebp] And An Inactive Peptide [emp33]
Contains 3,5-Dibromotyrosine In Position 4 (Denoted Dby)
Length = 215
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 658 VLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALIN-MTVSASTPTLLLTNLSAGIRYSVSL 716
V+L+W PPP IR Y++ V GN + + + + +L+NL RY+ ++
Sbjct: 129 VVLRWLPPPETPMTSHIR-YEVDVSAGNGAGSVQRVEILEGRTECVLSNLRGRTRYTFAV 187
Query: 717 AA 718
A
Sbjct: 188 RA 189
>pdb|1WWC|A Chain A, Nt3 Binding Domain Of Human Trkc Receptor
Length = 118
Score = 31.2 bits (69), Expect = 3.1, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 7/66 (10%)
Query: 31 RGHPEPTLVWKKNGHP------IDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVA 84
RG+P PTL W NG P I E + + +G L ++G Y + KN
Sbjct: 30 RGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGC-LLFNKPTHYNNGNYTLIAKNPL 88
Query: 85 GTREST 90
GT T
Sbjct: 89 GTANQT 94
>pdb|2DM2|A Chain A, Solution Structure Of The First Ig Domain Of Human
Palladin
Length = 110
Score = 31.2 bits (69), Expect = 3.2, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 6/76 (7%)
Query: 117 IVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSR------SLQLSDVRLEDAGEYVCEA 170
+ F C V G+ ++W + G + R SL + L+D G Y A
Sbjct: 26 VTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMA 85
Query: 171 ENAVGKISASATLTVQ 186
N G+IS + L VQ
Sbjct: 86 ANPQGRISCTGRLMVQ 101
>pdb|3PV6|A Chain A, Crystal Structure Of Nkp30 Bound To Its Ligand B7-H6
pdb|3PV7|A Chain A, Crystal Structure Of Nkp30 Ligand B7-H6
Length = 248
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 54/127 (42%), Gaps = 12/127 (9%)
Query: 152 SLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCG 211
SL+L ++LE+AGEY CE K + L V +P R + ++ D ++C
Sbjct: 83 SLRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVVASPASRLLLDQVGMKENEDK-YMCE 141
Query: 212 IEGSPPPSTFWMLEGN-RSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLG 270
G P + E + +P EI+ D + I+N+ T + CL
Sbjct: 142 SSGFYPEAINITWEKQTQKFPHP--------IEISEDVITGPTIKNMDGTFN--VTSCLK 191
Query: 271 VNAAGSD 277
+N++ D
Sbjct: 192 LNSSQED 198
>pdb|1Z9M|A Chain A, Crystal Structure Of Nectin-Like Molecule-1 Protein Domain
1
pdb|1Z9M|B Chain B, Crystal Structure Of Nectin-Like Molecule-1 Protein Domain
1
Length = 145
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 20/101 (19%)
Query: 277 DLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG--EGSVQW--------W 326
D A A + +S D P +++T+ L+CQV+ + S+QW +
Sbjct: 28 DKAMADINLSQDDSQP------WTSDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLY 81
Query: 327 RGEREVGSGPRVNVT----GDGSLVLTDVTKEDSGEYTCVV 363
GE+ R+ + + S+ +++V D GEYTC +
Sbjct: 82 FGEKRALRDNRIQLVTSTPHELSISISNVALADEGEYTCSI 122
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 13/74 (17%)
Query: 108 DTTVSASSIIVFECSVGGDAVLTVHWKRLGS---------AMPEDRMSVLPSR----SLQ 154
D TV A +V +C V ++ W A+ ++R+ ++ S S+
Sbjct: 47 DETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTPHELSIS 106
Query: 155 LSDVRLEDAGEYVC 168
+S+V L D GEY C
Sbjct: 107 ISNVALADEGEYTC 120
>pdb|1QG3|A Chain A, Crystal Structure Of A Tandem Pair Of Fibronectin Type Iii
Domains From The Cytoplasmic Tail Of Integrin Alpha6
Beta4
pdb|1QG3|B Chain B, Crystal Structure Of A Tandem Pair Of Fibronectin Type Iii
Domains From The Cytoplasmic Tail Of Integrin Alpha6
Beta4
Length = 195
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 36/89 (40%), Gaps = 11/89 (12%)
Query: 643 GVPQLTDPVLLNATSVLLKWKPP---PVGTHNGVIRTYQIIVGGGNNSALINMTVSASTP 699
G PQ + + + W PP P+G R I G + A + + + P
Sbjct: 3 GAPQNPNAKAAGSRKIHFNWLPPSGKPMG-----YRVKYWIQGDSESEAHL---LDSKVP 54
Query: 700 TLLLTNLSAGIRYSVSLAATNRAGTGPYS 728
++ LTNL Y + + A G GPYS
Sbjct: 55 SVELTNLYPYCDYEMKVCAYGAQGEGPYS 83
>pdb|3OQ3|B Chain B, Structural Basis Of Type-I Interferon Sequestration By A
Poxvirus Decoy Receptor
Length = 329
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Query: 25 LECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVV 80
L CG + W KN + + +K + G NL I + D GRY C V
Sbjct: 148 LYCGILYAKHYNNITWYKNNQELIIDGTKYSQ--SGQNLIIHNPELEDSGRYDCYV 201
>pdb|3LOH|E Chain E, Structure Of The Insulin Receptor Ectodomain, Including Ct
P
Length = 917
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 12/87 (13%)
Query: 601 GFLVTGLAHYSRYEFFLVPFFGSVD-----GKPSNLRAVRTLECEPSGVPQLTDPVLLNA 655
G+L+ GL +++Y F+ D G S++ V+T PS VP DP+ ++
Sbjct: 550 GWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQTDATNPS-VP--LDPISVSN 606
Query: 656 TS--VLLKWKPPPVGTHNGVIRTYQII 680
+S ++LKWKPP NG I Y +
Sbjct: 607 SSSQIILKWKPP--SDPNGNITHYLVF 631
>pdb|2DTG|E Chain E, Insulin Receptor (Ir) Ectodomain In Complex With Fab's
Length = 897
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 12/87 (13%)
Query: 601 GFLVTGLAHYSRYEFFLVPFFGSVD-----GKPSNLRAVRTLECEPSGVPQLTDPVLLNA 655
G+L+ GL +++Y F+ D G S++ V+T PS VP DP+ ++
Sbjct: 550 GWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQTDATNPS-VP--LDPISVSN 606
Query: 656 TS--VLLKWKPPPVGTHNGVIRTYQII 680
+S ++LKWKPP NG I Y +
Sbjct: 607 SSSQIILKWKPP--SDPNGNITHYLVF 631
>pdb|3R4D|A Chain A, Crystal Structure Of Mouse Coronavirus Receptor-Binding
Domain Complexed With Its Murine Receptor
pdb|3R4D|C Chain C, Crystal Structure Of Mouse Coronavirus Receptor-Binding
Domain Complexed With Its Murine Receptor
Length = 208
Score = 30.8 bits (68), Expect = 4.1, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
Query: 108 DTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMP-EDRMSVLPSRS-LQLSDVRLEDAGE 165
+TTV + C + D + W ++ +RM++ + S L++ ++ EDAGE
Sbjct: 119 NTTVKELDSVTLTC-LSNDIGANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGE 177
Query: 166 YVCEAENAVG-KISASATLTVQMAP 189
Y CE N V + S S L + P
Sbjct: 178 YQCEISNPVSVRRSNSIKLDIIFDP 202
Score = 30.8 bits (68), Expect = 4.2, Method: Composition-based stats.
Identities = 12/47 (25%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 321 GSVQWWRGEREVGSGPRVNVTGDGSLVLTD-VTKEDSGEYTCVVKSP 366
++QW + + R+ ++ + S++ D + +ED+GEY C + +P
Sbjct: 139 ANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNP 185
Score = 30.0 bits (66), Expect = 6.4, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 7/57 (12%)
Query: 51 NSKRLRLVDGTNLAIQDS-------RKTDDGRYQCVVKNVAGTRESTDAVLRVLVKP 100
NS+ L+L + L+ +S ++ D G YQC + N R S L ++ P
Sbjct: 146 NSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIFDP 202
>pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
pdb|3UTO|B Chain B, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
Length = 573
Score = 30.8 bits (68), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 33/96 (34%), Gaps = 12/96 (12%)
Query: 398 PGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVR 457
P PP P + N + L+W G S + Y +E S SP +
Sbjct: 10 PEPPRFPIIENILDEAVILSWKPPALDGGSLVTNYTIEKREAMGGSWSPCAKSRYT---- 65
Query: 458 VATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAP 493
T+ L G Y F + A N HG S P
Sbjct: 66 --------YTTIEGLRAGKQYEFRIIAENKHGQSKP 93
>pdb|2EC8|A Chain A, Crystal Structure Of The Exctracellular Domain Of The
Receptor Tyrosine Kinase, Kit
Length = 524
Score = 30.8 bits (68), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 3/82 (3%)
Query: 152 SLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERP---SDLRLEVGRDAVF 208
+L +S R+ D+G ++C A N G + + TL V + P + + + G +
Sbjct: 274 TLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVNDGENVDL 333
Query: 209 LCGIEGSPPPSTFWMLEGNRSL 230
+ E P P + NR+
Sbjct: 334 IVEYEAFPKPEHQQWIYMNRTF 355
>pdb|2DMK|A Chain A, The Solution Structure Of The Fn3 Domain Of Human Midline
2 Protein
Length = 127
Score = 30.4 bits (67), Expect = 4.4, Method: Composition-based stats.
Identities = 24/101 (23%), Positives = 46/101 (45%), Gaps = 5/101 (4%)
Query: 396 TYPGPPT-KPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATAT 454
T P PP+ + L + + +T+ W +++ SS Y+++ ++ S + +
Sbjct: 14 TAPNPPSIREELCTASHDTITVHWISDDEFSISS---YELQYTIFTGQANFISLYNSVDS 70
Query: 455 WVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSP 495
W+ + N+ TV L G Y F+V+A+N G P
Sbjct: 71 WM-IVPNIKQNHYTVHGLQSGTRYIFIVKAINQAGSRNSEP 110
>pdb|2EDB|A Chain A, Solution Structure Of The Fourth Fibronectin Type Iii
Domain Of Human Netrin Receptor Dcc
Length = 116
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Query: 658 VLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRYSVSLA 717
+++ W PP N V+R Y I G G+ A + V + + L + Y +SL
Sbjct: 33 IIMSWTPPL--NPNIVVRGYIIGYGVGSPYAE-TVRVDSKQRYYSIERLESSSHYVISLK 89
Query: 718 ATNRAGTGP--YSRPALLSLTSGP 739
A N AG G Y S+TSGP
Sbjct: 90 AFNNAGEGVPLYESATTRSITSGP 113
>pdb|2E9W|A Chain A, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
pdb|2E9W|B Chain B, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
Length = 489
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 3/82 (3%)
Query: 152 SLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERP---SDLRLEVGRDAVF 208
+L +S R+ D+G ++C A N G + + TL V + P + + + G +
Sbjct: 249 TLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVNDGENVDL 308
Query: 209 LCGIEGSPPPSTFWMLEGNRSL 230
+ E P P + NR+
Sbjct: 309 IVEYEAFPKPEHQQWIYMNRTF 330
>pdb|1V5J|A Chain A, Solution Structure Of Rsgi Ruh-008, Fn3 Domain In Human
Cdna
Length = 108
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 20/41 (48%)
Query: 596 AGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVRT 636
AG + LV GL YEF LV F GS PSN V T
Sbjct: 59 AGTETELLVPGLIKDVLYEFRLVAFAGSFVSDPSNTANVST 99
>pdb|2OYP|A Chain A, T Cell Immunoglobulin Mucin-3 Crystal Structure Revealed A
Galectin-9-Independent Binding Surface
Length = 109
Score = 30.4 bits (67), Expect = 4.6, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 33/82 (40%), Gaps = 17/82 (20%)
Query: 300 PANQTLPLRSEARLRCQVRGEGSVQWWRGEREVGSGPRVNVT---------------GDG 344
P + TLP C G+G W + E+ NVT GD
Sbjct: 15 PCSYTLPTSGTLVPMCW--GKGFCPWSQCTNELLRTDERNVTYQKSSRYQLKGDLNKGDV 72
Query: 345 SLVLTDVTKEDSGEYTCVVKSP 366
SL++ +VT +D G Y C ++ P
Sbjct: 73 SLIIKNVTLDDHGTYCCRIQFP 94
>pdb|2GQH|A Chain A, Solution Structure Of The 15th Ig-Like Domain Of Human
Kiaa1556 Protein
Length = 107
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 6/83 (7%)
Query: 311 ARLRCQVRGEGSVQWWRGEREVGSGPRVNVTGDGS---LVLTDVTKEDSGEYTCVVKSPH 367
A L+C++ V+W +G + G + ++ DG+ L + + D+G Y+CV
Sbjct: 25 ATLQCELSKAAPVEWRKGLEALRDGDKYSLRQDGAVCELQIHGLAMADNGVYSCVCGQER 84
Query: 368 GSASWSAS---LRFESPTNPNIG 387
SA+ + RF + P+ G
Sbjct: 85 TSATLTVRALPARFIEDSGPSSG 107
>pdb|2O26|X Chain X, Structure Of A Class Iii Rtk Signaling Assembly
pdb|2O26|Y Chain Y, Structure Of A Class Iii Rtk Signaling Assembly
pdb|2O26|U Chain U, Structure Of A Class Iii Rtk Signaling Assembly
pdb|2O26|W Chain W, Structure Of A Class Iii Rtk Signaling Assembly
Length = 290
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 151 RSLQLSDVRLEDAGEYVCEAENAVGKISASATLTV 185
+L +S R++D+G ++C A N G + + TL V
Sbjct: 252 ETLTISSARVDDSGVFMCYANNTFGSANVTTTLKV 286
>pdb|3KAA|A Chain A, Structure Of Tim-3 In Complex With Phosphatidylserine
pdb|3KAA|B Chain B, Structure Of Tim-3 In Complex With Phosphatidylserine
Length = 118
Score = 30.4 bits (67), Expect = 5.5, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 33/82 (40%), Gaps = 17/82 (20%)
Query: 300 PANQTLPLRSEARLRCQVRGEGSVQWWRGEREVGSGPRVNVT---------------GDG 344
P + TLP C G+G W + E+ NVT GD
Sbjct: 18 PCSYTLPTSGTLVPMCW--GKGFCPWSQCTNELLRTDERNVTYQKSSRYQLKGDLNKGDV 75
Query: 345 SLVLTDVTKEDSGEYTCVVKSP 366
SL++ +VT +D G Y C ++ P
Sbjct: 76 SLIIKNVTLDDHGTYCCRIQFP 97
>pdb|3QWQ|B Chain B, Crystal Structure Of The Extracellular Domain Of The
Epidermal Growth Factor Receptor In Complex With An
Adnectin
Length = 114
Score = 30.4 bits (67), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
Query: 642 SGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVG-GGNNSALINMTVSASTPT 700
S VP+ + V TS+L+ W + G + Y+I G G NS + TV T
Sbjct: 4 SDVPRDLEVVAATPTSLLISWD-----SGRGSYQYYRITYGETGGNSPVQEFTVPGPVHT 58
Query: 701 LLLTNLSAGIRYSVSLAA 718
++ L G+ Y++++ A
Sbjct: 59 ATISGLKPGVDYTITVYA 76
>pdb|4HUK|B Chain B, Mate Transporter Norm-ng In Complex With Tpp And Monobody
pdb|4HUL|B Chain B, Mate Transporter Norm-ng In Complex With Cs+ And Monobody
pdb|4HUM|B Chain B, Mate Transporter Norm-ng In Complex With Ethidium And
Monobody
pdb|4HUN|B Chain B, Mate Transporter Norm-ng In Complex With R6g And Monobody
Length = 99
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
Query: 642 SGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVG-GGNNSALINMTVSASTPT 700
S VP + V TS+L+ W + Y+I G G NS + TV S+ T
Sbjct: 10 SSVPTKLEVVAATPTSLLISWD-----ARGEYVVYYRITYGETGGNSPVQEFTVPGSSST 64
Query: 701 LLLTNLSAGIRYSVSLAA 718
++ LS G+ Y++++ A
Sbjct: 65 ATISGLSPGVDYTITVYA 82
>pdb|1PD6|A Chain A, The Nmr Structure Of Domain C2 Of Human Cardiac Myosin
Binding Protein C
Length = 104
Score = 30.0 bits (66), Expect = 6.8, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 5/58 (8%)
Query: 40 WKKNGHPIDFENSKRLRLVDGT--NLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLR 95
W KNG I SK + G L I DD YQCV V G + ST+ ++
Sbjct: 49 WLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCV---VGGEKCSTELFVK 103
>pdb|3MOQ|A Chain A, Amyloid Beta(18-41) Peptide Fusion With New Antigen
Receptor Variable Domain From Sharks
pdb|3MOQ|B Chain B, Amyloid Beta(18-41) Peptide Fusion With New Antigen
Receptor Variable Domain From Sharks
pdb|3MOQ|C Chain C, Amyloid Beta(18-41) Peptide Fusion With New Antigen
Receptor Variable Domain From Sharks
pdb|3MOQ|D Chain D, Amyloid Beta(18-41) Peptide Fusion With New Antigen
Receptor Variable Domain From Sharks
Length = 126
Score = 30.0 bits (66), Expect = 7.1, Method: Composition-based stats.
Identities = 12/21 (57%), Positives = 18/21 (85%)
Query: 150 SRSLQLSDVRLEDAGEYVCEA 170
S SL++SD+R+ED+G Y C+A
Sbjct: 65 SFSLRISDLRVEDSGTYKCQA 85
>pdb|2NCM|A Chain A, Neural Cell Adhesion Molecule, Nmr, 20 Structures
Length = 99
Score = 30.0 bits (66), Expect = 7.3, Method: Composition-based stats.
Identities = 20/93 (21%), Positives = 39/93 (41%), Gaps = 6/93 (6%)
Query: 10 VQPKSQRVAAGDTALLECGPPRGHPEPTLVW-KKNGHPIDFENSKRLRLV----DGTNLA 64
+ P ++ G++ C + + W NG + N +R+ +V D + L
Sbjct: 7 IVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLS-PNQQRISVVWNDDDSSTLT 65
Query: 65 IQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVL 97
I ++ D G Y+CVV GT+ +++
Sbjct: 66 IYNANIDDAGIYKCVVTAEDGTQSEATVNVKIF 98
>pdb|3ZEN|D Chain D, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|3ZEN|E Chain E, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|3ZEN|F Chain F, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|A Chain A, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|B Chain B, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
pdb|4B3Y|C Chain C, Cryo-em Structure Of The Mycobacterial Fatty Acid Synthase
Length = 3089
Score = 30.0 bits (66), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 7/58 (12%)
Query: 623 SVDGKPSNLRAVRTLECE---PSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTY 677
VD + +RAV + P +P++ D N +V + W P V H GV T+
Sbjct: 1034 EVDDAATAMRAVLAIAAGVEGPENLPKVVD----NTATVTVDWDPERVADHTGVTATF 1087
>pdb|2YUZ|A Chain A, Solution Structure Of 4th Immunoglobulin Domain Of Slow
Type Myosin-Binding Protein C
Length = 100
Score = 29.6 bits (65), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Query: 296 ILFGPANQTLPLRSEARLRCQVRGEGSVQWWRGEREVGSGPRVNVTGDG---SLVLTDVT 352
IL +QT+ L E L+C++ +W + V R+ V G LV+ +
Sbjct: 10 ILTPLTDQTVNLGKEICLKCEISENIPGKWTKNGLPVQESDRLKVVQKGRIHKLVIANAL 69
Query: 353 KEDSGEYT 360
ED G+Y
Sbjct: 70 TEDEGDYV 77
>pdb|3QS9|E Chain E, Crystal Structure Of A Human Flt3 Ligand-Receptor Ternary
Complex
pdb|3QS9|F Chain F, Crystal Structure Of A Human Flt3 Ligand-Receptor Ternary
Complex
pdb|3QS9|G Chain G, Crystal Structure Of A Human Flt3 Ligand-Receptor Ternary
Complex
pdb|3QS9|H Chain H, Crystal Structure Of A Human Flt3 Ligand-Receptor Ternary
Complex
Length = 527
Score = 29.6 bits (65), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 45/235 (19%), Positives = 74/235 (31%), Gaps = 34/235 (14%)
Query: 70 KTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYI--IRGPKDTTVSASSIIVFECSVGGDA 127
+ D G Y C + S A++ ++ K +I +D + F
Sbjct: 299 RNDTGYYTCS----SSKHPSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYP 354
Query: 128 VLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQM 187
+ W + P ++ + S+ GEY+ AEN + + TL ++
Sbjct: 355 QIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRR 414
Query: 188 APIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSD 247
P V S + C +G P PS W D+ N EIT
Sbjct: 415 KPQVLAEASASQAS--------CFSDGYPLPSWTWK--------KCSDKSPNCTEEITEG 458
Query: 248 GMNLLKIQ------------NVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDP 290
N + N+S ++ C N+ G+ L GP P
Sbjct: 459 VWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAYNSLGTSCETILLNSPGPFP 513
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.133 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,655,001
Number of Sequences: 62578
Number of extensions: 1446837
Number of successful extensions: 4423
Number of sequences better than 100.0: 256
Number of HSP's better than 100.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 146
Number of HSP's that attempted gapping in prelim test: 3558
Number of HSP's gapped (non-prelim): 676
length of query: 977
length of database: 14,973,337
effective HSP length: 108
effective length of query: 869
effective length of database: 8,214,913
effective search space: 7138759397
effective search space used: 7138759397
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (26.2 bits)