Query psy574
Match_columns 977
No_of_seqs 494 out of 3689
Neff 9.5
Searched_HMMs 46136
Date Fri Aug 16 16:47:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy574.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/574hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4222|consensus 100.0 3.5E-84 7.5E-89 732.0 50.5 751 1-802 127-899 (1281)
2 KOG3513|consensus 100.0 3.7E-81 8E-86 719.9 70.5 648 5-739 240-917 (1051)
3 KOG4221|consensus 100.0 1.5E-72 3.1E-77 641.0 57.3 654 4-739 40-714 (1381)
4 KOG4221|consensus 100.0 1.3E-68 2.8E-73 608.8 59.9 650 6-739 141-1022(1381)
5 KOG3513|consensus 100.0 2.2E-64 4.8E-69 581.2 63.5 639 7-739 137-818 (1051)
6 KOG4222|consensus 100.0 1.1E-47 2.5E-52 435.8 36.9 660 5-739 31-744 (1281)
7 KOG4194|consensus 100.0 3.7E-30 8E-35 275.1 24.4 275 4-287 502-797 (873)
8 KOG0196|consensus 100.0 2.7E-29 5.8E-34 277.5 25.4 299 396-856 330-641 (996)
9 PHA02785 IL-beta-binding prote 100.0 4.6E-26 9.9E-31 248.3 29.8 257 14-277 35-318 (326)
10 KOG4194|consensus 99.9 8.3E-27 1.8E-31 249.6 21.8 272 98-380 502-797 (873)
11 PHA02785 IL-beta-binding prote 99.9 1.6E-23 3.5E-28 228.3 28.3 246 108-369 35-317 (326)
12 PHA02826 IL-1 receptor-like pr 99.8 9.3E-18 2E-22 171.3 19.8 166 12-185 29-226 (227)
13 KOG3515|consensus 99.7 1.4E-15 3E-20 173.7 29.5 353 12-381 14-398 (741)
14 KOG4258|consensus 99.7 2.1E-16 4.6E-21 176.6 21.2 300 399-739 489-926 (1025)
15 PHA02826 IL-1 receptor-like pr 99.7 5.6E-16 1.2E-20 158.2 18.0 156 107-277 30-214 (227)
16 cd05851 Ig3_Contactin-1 Third 99.5 9.1E-14 2E-18 120.4 12.0 88 99-186 1-88 (88)
17 KOG3515|consensus 99.5 8.5E-13 1.8E-17 151.2 23.0 484 15-583 216-732 (741)
18 cd05762 Ig8_MLCK Eighth immuno 99.5 1.7E-13 3.6E-18 121.2 12.2 91 6-100 1-94 (98)
19 cd05762 Ig8_MLCK Eighth immuno 99.5 2.9E-13 6.4E-18 119.6 12.1 91 100-190 1-95 (98)
20 cd05724 Ig2_Robo Second immuno 99.5 4.2E-13 9.1E-18 116.5 11.5 86 10-96 1-86 (86)
21 cd05851 Ig3_Contactin-1 Third 99.5 4E-13 8.7E-18 116.4 11.0 86 6-96 2-87 (88)
22 cd05722 Ig1_Neogenin First imm 99.5 4.7E-13 1E-17 118.3 11.1 88 8-96 2-95 (95)
23 cd05850 Ig1_Contactin-2 First 99.5 7.9E-13 1.7E-17 116.2 12.3 88 6-95 2-93 (94)
24 cd05848 Ig1_Contactin-5 First 99.4 7.6E-13 1.6E-17 116.2 11.4 87 6-94 2-92 (94)
25 cd04968 Ig3_Contactin_like Thi 99.4 2.4E-12 5.1E-17 112.0 12.5 88 99-186 1-88 (88)
26 cd05866 Ig1_NCAM-2 First immun 99.4 1.3E-12 2.9E-17 113.3 10.5 86 7-96 2-91 (92)
27 cd05865 Ig1_NCAM-1 First immun 99.4 1.4E-12 2.9E-17 114.5 10.6 88 7-96 2-95 (96)
28 cd05849 Ig1_Contactin-1 First 99.4 2.2E-12 4.7E-17 112.7 11.9 87 6-95 2-92 (93)
29 cd05852 Ig5_Contactin-1 Fifth 99.4 1.2E-12 2.6E-17 108.5 9.6 73 20-96 1-73 (73)
30 cd05728 Ig4_Contactin-2-like F 99.4 1.5E-12 3.3E-17 112.2 10.6 84 102-185 2-85 (85)
31 cd05728 Ig4_Contactin-2-like F 99.4 2.8E-12 6E-17 110.5 10.4 85 7-96 1-85 (85)
32 cd05738 Ig2_RPTP_IIa_LAR_like 99.4 1.7E-12 3.6E-17 108.6 8.7 74 23-97 1-74 (74)
33 cd05852 Ig5_Contactin-1 Fifth 99.4 2.6E-12 5.6E-17 106.6 9.5 72 114-185 1-73 (73)
34 cd05745 Ig3_Peroxidasin Third 99.4 2.7E-12 5.8E-17 107.5 9.6 73 113-185 1-74 (74)
35 cd05745 Ig3_Peroxidasin Third 99.4 2.6E-12 5.7E-17 107.5 9.2 74 19-96 1-74 (74)
36 cd05747 Ig5_Titin_like M5, fif 99.4 5E-12 1.1E-16 110.9 11.3 82 4-88 2-86 (92)
37 cd05740 Ig_CEACAM_D4 Fourth im 99.4 6.3E-12 1.4E-16 109.3 11.2 81 11-96 9-90 (91)
38 cd07693 Ig1_Robo First immunog 99.4 5.8E-12 1.3E-16 112.8 11.3 90 6-96 2-99 (100)
39 cd05737 Ig_Myomesin_like_C C-t 99.4 5.4E-12 1.2E-16 110.6 10.7 85 9-95 5-91 (92)
40 cd05853 Ig6_Contactin-4 Sixth 99.3 4.9E-12 1.1E-16 107.2 9.8 79 21-100 1-85 (85)
41 cd05892 Ig_Myotilin_C C-termin 99.3 4.3E-12 9.2E-17 105.6 9.1 71 23-96 1-75 (75)
42 cd05747 Ig5_Titin_like M5, fif 99.3 8.6E-12 1.9E-16 109.4 11.4 87 98-184 2-92 (92)
43 cd05894 Ig_C5_MyBP-C C5 immuno 99.3 9E-12 2E-16 107.2 11.2 80 14-96 4-86 (86)
44 cd05868 Ig4_NrCAM Fourth immun 99.3 7.6E-12 1.7E-16 105.1 10.3 75 20-96 1-75 (76)
45 cd04975 Ig4_SCFR_like Fourth i 99.3 7.5E-12 1.6E-16 110.7 10.5 81 14-97 12-100 (101)
46 cd05867 Ig4_L1-CAM_like Fourth 99.3 9E-12 2E-16 104.9 10.4 74 20-96 1-75 (76)
47 cd05893 Ig_Palladin_C C-termin 99.3 5.7E-12 1.2E-16 105.0 8.8 71 23-96 1-75 (75)
48 cd05892 Ig_Myotilin_C C-termin 99.3 7.6E-12 1.6E-16 104.1 9.4 69 117-185 1-75 (75)
49 cd04968 Ig3_Contactin_like Thi 99.3 1.1E-11 2.3E-16 107.9 10.6 86 6-96 2-87 (88)
50 cd05894 Ig_C5_MyBP-C C5 immuno 99.3 1.8E-11 3.8E-16 105.4 11.5 78 108-185 4-86 (86)
51 cd05867 Ig4_L1-CAM_like Fourth 99.3 1.5E-11 3.2E-16 103.5 10.8 72 114-185 1-75 (76)
52 PF07679 I-set: Immunoglobulin 99.3 1.5E-11 3.2E-16 107.8 11.2 89 6-96 1-90 (90)
53 cd05749 Ig2_Tyro3_like Second 99.3 7.7E-12 1.7E-16 105.6 8.9 79 8-94 1-80 (81)
54 cd05868 Ig4_NrCAM Fourth immun 99.3 1.4E-11 2.9E-16 103.5 10.3 73 114-186 1-76 (76)
55 cd05893 Ig_Palladin_C C-termin 99.3 9.6E-12 2.1E-16 103.7 9.1 69 117-185 1-75 (75)
56 cd04975 Ig4_SCFR_like Fourth i 99.3 1.4E-11 3.1E-16 109.0 10.5 80 107-186 11-100 (101)
57 cd05727 Ig2_Contactin-2-like S 99.3 6.3E-12 1.4E-16 108.4 8.0 81 6-86 3-85 (96)
58 cd05865 Ig1_NCAM-1 First immun 99.3 1.9E-11 4.2E-16 107.2 11.2 84 103-186 4-96 (96)
59 cd05725 Ig3_Robo Third immunog 99.3 1E-11 2.3E-16 102.3 8.9 69 117-185 1-69 (69)
60 PF07679 I-set: Immunoglobulin 99.3 2.1E-11 4.5E-16 106.8 11.3 86 100-185 1-90 (90)
61 cd05723 Ig4_Neogenin Fourth im 99.3 1.9E-11 4E-16 101.3 10.2 70 116-185 1-71 (71)
62 cd05730 Ig3_NCAM-1_like Third 99.3 3E-11 6.6E-16 106.8 12.1 84 12-98 10-94 (95)
63 cd05735 Ig8_DSCAM Eight immuno 99.3 2E-11 4.3E-16 105.7 10.6 79 20-101 1-86 (88)
64 cd04972 Ig_TrkABC_d4 Fourth do 99.3 2.6E-11 5.5E-16 105.9 11.0 83 103-185 4-90 (90)
65 cd05869 Ig5_NCAM-1 Fifth immun 99.3 3.5E-11 7.5E-16 106.7 11.8 87 99-185 2-97 (97)
66 cd05863 Ig2_VEGFR-3 Second imm 99.3 1.8E-11 3.8E-16 98.9 9.0 66 117-186 1-66 (67)
67 cd05854 Ig6_Contactin-2 Sixth 99.3 3E-11 6.5E-16 103.7 10.7 78 21-100 1-85 (85)
68 cd05740 Ig_CEACAM_D4 Fourth im 99.3 3.5E-11 7.6E-16 104.7 11.2 80 105-185 9-90 (91)
69 cd05853 Ig6_Contactin-4 Sixth 99.3 2.1E-11 4.6E-16 103.3 9.4 75 115-189 1-85 (85)
70 cd04969 Ig5_Contactin_like Fif 99.3 2.2E-11 4.7E-16 101.7 9.4 73 20-96 1-73 (73)
71 cd05737 Ig_Myomesin_like_C C-t 99.3 3.3E-11 7.2E-16 105.6 10.9 81 105-185 7-92 (92)
72 cd04972 Ig_TrkABC_d4 Fourth do 99.3 2.6E-11 5.7E-16 105.8 10.2 86 9-96 4-90 (90)
73 cd05735 Ig8_DSCAM Eight immuno 99.3 2.8E-11 6E-16 104.8 10.1 77 114-190 1-86 (88)
74 cd05730 Ig3_NCAM-1_like Third 99.3 4.8E-11 1E-15 105.5 11.7 81 107-187 11-94 (95)
75 cd05870 Ig5_NCAM-2 Fifth immun 99.3 3.5E-11 7.7E-16 106.9 10.9 86 99-185 2-98 (98)
76 cd05723 Ig4_Neogenin Fourth im 99.3 2.5E-11 5.4E-16 100.5 9.1 71 22-96 1-71 (71)
77 cd04978 Ig4_L1-NrCAM_like Four 99.3 3.7E-11 8E-16 101.4 10.4 75 20-96 1-75 (76)
78 cd05849 Ig1_Contactin-1 First 99.3 6E-11 1.3E-15 103.7 11.7 85 99-184 1-92 (93)
79 cd07693 Ig1_Robo First immunog 99.3 5E-11 1.1E-15 106.8 11.4 87 99-185 1-99 (100)
80 cd04977 Ig1_NCAM-1_like First 99.3 3.4E-11 7.4E-16 105.3 10.0 86 7-96 2-92 (92)
81 cd04970 Ig6_Contactin_like Six 99.3 3.5E-11 7.6E-16 103.8 9.9 78 21-100 1-85 (85)
82 cd04969 Ig5_Contactin_like Fif 99.2 3.6E-11 7.8E-16 100.3 9.7 72 114-185 1-73 (73)
83 cd04978 Ig4_L1-NrCAM_like Four 99.2 4.3E-11 9.3E-16 100.9 10.2 73 114-186 1-76 (76)
84 cd05859 Ig4_PDGFR-alpha Fourth 99.2 4.1E-11 8.8E-16 106.2 10.4 81 14-97 12-100 (101)
85 cd05850 Ig1_Contactin-2 First 99.2 8.8E-11 1.9E-15 103.2 12.4 85 100-184 2-93 (94)
86 cd05859 Ig4_PDGFR-alpha Fourth 99.2 4.3E-11 9.3E-16 106.1 10.5 79 108-186 12-100 (101)
87 cd05891 Ig_M-protein_C C-termi 99.2 5.1E-11 1.1E-15 104.2 10.6 77 11-88 7-85 (92)
88 cd05726 Ig4_Robo Fhird immunog 99.2 4.8E-11 1E-15 104.2 10.4 78 20-99 1-84 (90)
89 cd05854 Ig6_Contactin-2 Sixth 99.2 5.4E-11 1.2E-15 102.1 10.4 75 115-189 1-85 (85)
90 cd05739 Ig3_RPTP_IIa_LAR_like 99.2 5.8E-11 1.2E-15 97.3 10.0 69 114-184 1-69 (69)
91 cd04976 Ig2_VEGFR Second immun 99.2 4.5E-11 9.8E-16 98.8 9.4 70 117-186 1-70 (71)
92 cd05726 Ig4_Robo Fhird immunog 99.2 4.8E-11 1E-15 104.2 10.1 75 114-188 1-84 (90)
93 cd04973 Ig1_FGFR First immunog 99.2 5.3E-11 1.2E-15 100.8 10.1 71 12-87 1-71 (79)
94 cd05771 IgC_Tapasin_R Tapasin- 99.2 1.7E-10 3.7E-15 109.9 14.6 123 152-275 2-132 (139)
95 cd05848 Ig1_Contactin-5 First 99.2 8.8E-11 1.9E-15 103.1 11.6 84 100-183 2-92 (94)
96 cd04973 Ig1_FGFR First immunog 99.2 5.8E-11 1.3E-15 100.6 10.1 78 106-185 1-79 (79)
97 cd05876 Ig3_L1-CAM Third immun 99.2 5.1E-11 1.1E-15 98.7 9.2 69 117-185 1-70 (71)
98 cd05744 Ig_Myotilin_C_like Imm 99.2 7.2E-11 1.6E-15 98.8 9.6 69 117-185 1-75 (75)
99 cd05722 Ig1_Neogenin First imm 99.2 9.2E-11 2E-15 103.6 10.8 84 102-185 2-95 (95)
100 cd04967 Ig1_Contactin First Ig 99.2 7.8E-11 1.7E-15 103.1 10.2 84 6-91 2-89 (91)
101 cd05724 Ig2_Robo Second immuno 99.2 1E-10 2.3E-15 101.3 10.9 81 105-185 2-86 (86)
102 cd05866 Ig1_NCAM-2 First immun 99.2 1.1E-10 2.3E-15 101.4 10.8 82 103-185 4-91 (92)
103 cd05875 Ig6_hNeurofascin_like 99.2 8.2E-11 1.8E-15 98.9 9.8 71 23-94 1-76 (77)
104 cd05760 Ig2_PTK7 Second immuno 99.2 7.8E-11 1.7E-15 99.3 9.8 73 23-97 1-75 (77)
105 cd05732 Ig5_NCAM-1_like Fifth 99.2 9.5E-11 2.1E-15 103.9 10.8 86 99-185 2-96 (96)
106 cd05845 Ig2_L1-CAM_like Second 99.2 3.3E-11 7E-16 103.8 7.4 78 6-84 3-82 (95)
107 cd05873 Ig_Sema4D_like Immunog 99.2 1.3E-10 2.7E-15 99.0 10.8 70 10-83 1-70 (87)
108 cd05874 Ig6_NrCAM Sixth immuno 99.2 9.5E-11 2.1E-15 98.5 9.8 71 23-94 1-76 (77)
109 cd05870 Ig5_NCAM-2 Fifth immun 99.2 1.7E-10 3.6E-15 102.5 11.9 95 188-285 2-98 (98)
110 cd05869 Ig5_NCAM-1 Fifth immun 99.2 1.6E-10 3.5E-15 102.4 11.8 96 188-285 2-97 (97)
111 cd05857 Ig2_FGFR Second immuno 99.2 1.3E-10 2.8E-15 100.4 10.9 77 109-185 4-85 (85)
112 cd05863 Ig2_VEGFR-3 Second imm 99.2 6.5E-11 1.4E-15 95.6 8.2 65 23-96 1-65 (67)
113 cd05733 Ig6_L1-CAM_like Sixth 99.2 7.7E-11 1.7E-15 99.3 9.1 71 23-94 1-76 (77)
114 cd05746 Ig4_Peroxidasin Fourth 99.2 6.1E-11 1.3E-15 97.6 8.3 63 23-88 1-63 (69)
115 cd05773 Ig8_hNephrin_like Eigh 99.2 1.9E-10 4.2E-15 103.9 12.3 93 5-100 4-108 (109)
116 cd05746 Ig4_Peroxidasin Fourth 99.2 6.1E-11 1.3E-15 97.6 8.2 68 117-184 1-69 (69)
117 cd05864 Ig2_VEGFR-2 Second imm 99.2 8.6E-11 1.9E-15 96.2 8.8 68 117-185 1-68 (70)
118 cd05864 Ig2_VEGFR-2 Second imm 99.2 4.9E-11 1.1E-15 97.6 7.3 61 23-88 1-61 (70)
119 cd05771 IgC_Tapasin_R Tapasin- 99.2 2.6E-10 5.6E-15 108.7 13.4 112 62-174 2-131 (139)
120 cd04970 Ig6_Contactin_like Six 99.2 8.8E-11 1.9E-15 101.3 9.2 75 115-189 1-85 (85)
121 cd05773 Ig8_hNephrin_like Eigh 99.2 1.6E-10 3.5E-15 104.4 10.9 92 98-189 3-108 (109)
122 PF00041 fn3: Fibronectin type 99.2 1.1E-10 2.5E-15 100.8 9.5 83 644-728 2-85 (85)
123 cd05752 Ig1_FcgammaR_like Frst 99.2 9E-11 2E-15 98.5 8.3 77 6-96 1-78 (78)
124 cd05857 Ig2_FGFR Second immuno 99.2 2.4E-10 5.1E-15 98.8 11.3 81 14-96 3-85 (85)
125 cd05749 Ig2_Tyro3_like Second 99.2 1.2E-10 2.7E-15 98.3 9.2 78 102-183 1-80 (81)
126 cd05734 Ig7_DSCAM Seventh immu 99.2 8.5E-11 1.8E-15 99.8 8.3 73 23-96 1-79 (79)
127 cd05725 Ig3_Robo Third immunog 99.2 1.3E-10 2.8E-15 95.8 8.9 69 23-96 1-69 (69)
128 cd05738 Ig2_RPTP_IIa_LAR_like 99.2 1.2E-10 2.7E-15 97.3 8.9 69 117-185 1-73 (74)
129 cd05748 Ig_Titin_like Immunogl 99.2 1.9E-10 4.1E-15 96.3 10.0 70 116-185 1-74 (74)
130 cd04979 Ig_Semaphorin_C Immuno 99.2 2.2E-10 4.8E-15 99.8 10.7 84 11-97 2-87 (89)
131 cd07702 Ig2_VEGFR-1 Second imm 99.2 1.1E-10 2.3E-15 95.8 7.8 69 23-94 1-70 (72)
132 cd05891 Ig_M-protein_C C-termi 99.2 3E-10 6.6E-15 99.3 11.3 81 105-185 7-92 (92)
133 cd05758 Ig5_KIRREL3-like Fifth 99.2 2.7E-10 5.9E-15 101.2 11.1 78 10-88 6-92 (98)
134 cd05756 Ig1_IL1R_like First im 99.1 1.6E-10 3.5E-15 101.0 9.1 82 12-96 6-94 (94)
135 cd05731 Ig3_L1-CAM_like Third 99.1 1.7E-10 3.7E-15 95.8 8.8 69 117-185 1-70 (71)
136 cd05753 Ig2_FcgammaR_like Seco 99.1 1.6E-10 3.5E-15 98.6 8.7 80 10-96 4-83 (83)
137 cd05732 Ig5_NCAM-1_like Fifth 99.1 3.1E-10 6.7E-15 100.6 10.7 95 188-285 2-96 (96)
138 cd05876 Ig3_L1-CAM Third immun 99.1 1.8E-10 3.8E-15 95.4 8.4 70 23-96 1-70 (71)
139 cd05744 Ig_Myotilin_C_like Imm 99.1 3E-10 6.6E-15 95.0 9.8 75 206-285 1-75 (75)
140 cd05748 Ig_Titin_like Immunogl 99.1 3.2E-10 6.9E-15 94.9 9.9 71 22-96 1-74 (74)
141 cd05764 Ig_2 Subgroup of the i 99.1 3.4E-10 7.3E-15 94.8 10.0 73 20-96 1-74 (74)
142 cd05764 Ig_2 Subgroup of the i 99.1 3.3E-10 7.2E-15 94.9 9.7 72 114-185 1-74 (74)
143 cd05856 Ig2_FGFRL1-like Second 99.1 2.8E-10 6E-15 97.6 9.4 76 110-185 5-82 (82)
144 cd05760 Ig2_PTK7 Second immuno 99.1 3.2E-10 6.9E-15 95.5 9.5 69 117-185 1-74 (77)
145 cd04976 Ig2_VEGFR Second immun 99.1 2E-10 4.3E-15 94.9 7.9 69 23-96 1-69 (71)
146 cd05855 Ig_TrkB_d5 Fifth domai 99.1 2.8E-10 6.1E-15 95.0 8.5 67 118-184 2-77 (79)
147 cd04974 Ig3_FGFR Third immunog 99.1 2.9E-10 6.3E-15 99.1 9.0 76 20-97 1-90 (90)
148 cd05763 Ig_1 Subgroup of the i 99.1 3.6E-10 7.9E-15 94.8 9.3 72 23-96 1-74 (75)
149 cd04977 Ig1_NCAM-1_like First 99.1 5.8E-10 1.3E-14 97.5 10.8 82 103-185 4-92 (92)
150 cd05756 Ig1_IL1R_like First im 99.1 3E-10 6.5E-15 99.3 8.9 79 107-185 7-94 (94)
151 cd05763 Ig_1 Subgroup of the i 99.1 3.8E-10 8.3E-15 94.7 9.3 70 117-186 1-75 (75)
152 cd05743 Ig_Perlecan_D2_like Im 99.1 3.2E-10 6.9E-15 95.9 8.7 68 20-90 1-71 (78)
153 cd05736 Ig2_Follistatin_like S 99.1 5E-10 1.1E-14 94.3 9.5 73 23-97 1-74 (76)
154 cd05758 Ig5_KIRREL3-like Fifth 99.1 7.5E-10 1.6E-14 98.3 11.1 84 99-183 2-97 (98)
155 cd05743 Ig_Perlecan_D2_like Im 99.1 5.6E-10 1.2E-14 94.4 9.6 71 114-184 1-75 (78)
156 cd05858 Ig3_FGFR-2 Third immun 99.1 4.6E-10 9.9E-15 97.9 9.2 75 20-96 1-89 (90)
157 cd04971 Ig_TrKABC_d5 Fifth dom 99.1 5.1E-10 1.1E-14 94.8 9.1 63 25-88 3-73 (81)
158 cd05856 Ig2_FGFRL1-like Second 99.1 3.6E-10 7.7E-15 97.0 8.3 78 15-95 4-81 (82)
159 cd05739 Ig3_RPTP_IIa_LAR_like 99.1 6.6E-10 1.4E-14 91.0 9.4 63 20-88 1-63 (69)
160 cd05855 Ig_TrkB_d5 Fifth domai 99.1 4.7E-10 1E-14 93.7 8.5 63 25-88 3-71 (79)
161 cd04974 Ig3_FGFR Third immunog 99.1 3.3E-10 7.2E-15 98.7 7.9 73 114-186 1-90 (90)
162 cd04971 Ig_TrKABC_d5 Fifth dom 99.1 5.8E-10 1.3E-14 94.5 8.9 67 118-184 2-79 (81)
163 cd07702 Ig2_VEGFR-1 Second imm 99.1 6.6E-10 1.4E-14 91.1 8.7 67 117-183 1-68 (72)
164 cd05765 Ig_3 Subgroup of the i 99.1 8.4E-10 1.8E-14 94.3 9.8 75 20-96 1-81 (81)
165 cd05752 Ig1_FcgammaR_like Frst 99.1 4.3E-10 9.2E-15 94.4 7.4 77 100-185 1-78 (78)
166 cd05765 Ig_3 Subgroup of the i 99.1 8.7E-10 1.9E-14 94.3 9.3 72 114-185 1-81 (81)
167 cd05882 Ig1_Necl-1 First (N-te 99.0 1.1E-09 2.3E-14 95.7 9.9 83 11-96 3-95 (95)
168 cd05858 Ig3_FGFR-2 Third immun 99.0 1.2E-09 2.5E-14 95.4 9.1 72 114-185 1-89 (90)
169 cd05734 Ig7_DSCAM Seventh immu 99.0 1E-09 2.2E-14 93.1 8.4 69 117-185 1-79 (79)
170 cd05731 Ig3_L1-CAM_like Third 99.0 1E-09 2.3E-14 91.0 8.3 69 23-96 1-70 (71)
171 cd05757 Ig2_IL1R_like Second i 99.0 1.8E-09 3.9E-14 93.7 9.6 71 14-87 4-78 (92)
172 cd05873 Ig_Sema4D_like Immunog 99.0 3.2E-09 6.9E-14 90.4 10.7 69 105-174 2-71 (87)
173 cd04967 Ig1_Contactin First Ig 99.0 3.1E-09 6.7E-14 93.0 11.0 78 100-178 2-86 (91)
174 cd05754 Ig3_Perlecan_like Thir 99.0 2.9E-09 6.2E-14 91.9 10.0 79 103-183 5-84 (85)
175 PF00041 fn3: Fibronectin type 99.0 3.7E-09 8.1E-14 91.3 10.8 81 547-629 3-85 (85)
176 cd05754 Ig3_Perlecan_like Thir 99.0 2.5E-09 5.4E-14 92.2 9.4 75 9-88 5-79 (85)
177 cd05736 Ig2_Follistatin_like S 99.0 3E-09 6.5E-14 89.6 9.3 70 117-186 1-74 (76)
178 cd05742 Ig1_VEGFR_like First i 98.9 4.2E-09 9.1E-14 90.6 9.4 73 114-186 1-84 (84)
179 cd05895 Ig_Pro_neuregulin-1 Im 98.9 3.8E-09 8.3E-14 88.8 8.3 66 23-88 1-71 (76)
180 cd04979 Ig_Semaphorin_C Immuno 98.9 7.3E-09 1.6E-13 90.2 10.2 80 105-186 2-87 (89)
181 cd05875 Ig6_hNeurofascin_like 98.9 6.5E-09 1.4E-13 87.3 9.4 62 117-178 1-70 (77)
182 cd05757 Ig2_IL1R_like Second i 98.9 6.1E-09 1.3E-13 90.4 9.2 78 108-185 4-86 (92)
183 cd05750 Ig_Pro_neuregulin Immu 98.9 4E-09 8.6E-14 88.6 7.6 66 117-182 1-74 (75)
184 cd05733 Ig6_L1-CAM_like Sixth 98.9 5.4E-09 1.2E-13 88.0 8.3 67 117-183 1-76 (77)
185 cd07701 Ig1_Necl-3 First (N-te 98.9 1.1E-08 2.3E-13 89.9 10.1 79 106-185 4-95 (95)
186 cd05874 Ig6_NrCAM Sixth immuno 98.9 9.9E-09 2.1E-13 86.2 9.5 67 117-183 1-76 (77)
187 cd05861 Ig1_PDGFR-alphabeta Fr 98.9 1.2E-08 2.5E-13 87.5 10.0 77 20-97 1-83 (84)
188 cd05750 Ig_Pro_neuregulin Immu 98.9 7E-09 1.5E-13 87.1 8.1 65 23-88 1-70 (75)
189 cd05882 Ig1_Necl-1 First (N-te 98.9 1.9E-08 4.1E-13 87.9 10.8 87 196-284 5-94 (95)
190 cd05871 Ig_Semaphorin_classIII 98.9 2.2E-08 4.8E-13 86.9 11.0 80 14-97 5-89 (91)
191 PF13895 Ig_2: Immunoglobulin 98.9 1.1E-08 2.5E-13 87.0 9.1 79 6-96 2-80 (80)
192 cd05861 Ig1_PDGFR-alphabeta Fr 98.9 2E-08 4.2E-13 86.1 10.4 73 114-186 1-83 (84)
193 cd05774 Ig_CEACAM_D1 First imm 98.9 2.2E-08 4.8E-13 88.9 11.1 87 8-95 1-104 (105)
194 cd05753 Ig2_FcgammaR_like Seco 98.8 1.2E-08 2.5E-13 87.2 8.5 74 108-185 8-83 (83)
195 PHA03376 BARF1; Provisional 98.8 5.5E-08 1.2E-12 91.2 12.7 127 14-141 20-166 (221)
196 cd05897 Ig2_IL1R2_like Second 98.8 1.4E-08 3E-13 87.9 8.2 73 14-87 4-81 (95)
197 cd07701 Ig1_Necl-3 First (N-te 98.8 3.2E-08 7E-13 86.8 10.5 89 195-285 4-95 (95)
198 cd05729 Ig2_FGFR_like Second i 98.8 3.6E-08 7.7E-13 85.1 10.7 77 109-185 4-85 (85)
199 cd05898 Ig5_KIRREL3 Fifth immu 98.8 4.6E-08 9.9E-13 85.4 10.9 78 10-88 6-92 (98)
200 cd07690 Ig1_CD4 First immunogl 98.8 2.4E-08 5.3E-13 86.6 8.7 71 15-86 2-90 (94)
201 smart00408 IGc2 Immunoglobulin 98.8 3.3E-08 7.2E-13 79.4 8.7 63 19-85 1-63 (63)
202 cd05729 Ig2_FGFR_like Second i 98.8 7E-08 1.5E-12 83.3 11.2 79 15-95 4-84 (85)
203 cd05727 Ig2_Contactin-2-like S 98.7 3.2E-08 6.9E-13 85.5 7.6 69 107-175 11-84 (96)
204 cd05895 Ig_Pro_neuregulin-1 Im 98.7 4.4E-08 9.4E-13 82.4 8.3 66 117-182 1-75 (76)
205 cd05898 Ig5_KIRREL3 Fifth immu 98.7 1.2E-07 2.6E-12 82.7 11.0 91 188-283 2-97 (98)
206 cd05871 Ig_Semaphorin_classIII 98.7 1.1E-07 2.5E-12 82.5 10.3 76 109-186 6-89 (91)
207 smart00408 IGc2 Immunoglobulin 98.7 7.4E-08 1.6E-12 77.3 8.6 63 113-175 1-63 (63)
208 cd05717 Ig1_Necl-1-3_like Firs 98.7 1.1E-07 2.4E-12 83.8 10.3 79 106-185 4-95 (95)
209 cd05872 Ig_Sema4B_like Immunog 98.7 1.1E-07 2.4E-12 80.3 9.5 66 13-83 4-69 (85)
210 cd05742 Ig1_VEGFR_like First i 98.7 4.6E-08 1E-12 84.1 7.3 81 203-285 1-83 (84)
211 PF13895 Ig_2: Immunoglobulin 98.7 1.3E-07 2.8E-12 80.4 9.6 78 100-185 2-80 (80)
212 smart00410 IG_like Immunoglobu 98.7 2.3E-07 4.9E-12 79.7 11.3 81 12-96 1-85 (86)
213 smart00409 IG Immunoglobulin. 98.7 2.3E-07 4.9E-12 79.7 11.3 81 12-96 1-85 (86)
214 cd05885 Ig2_Necl-4 Second immu 98.6 2.2E-07 4.9E-12 77.3 9.0 63 23-87 2-69 (80)
215 KOG4802|consensus 98.6 1.1E-06 2.5E-11 91.7 16.0 151 454-636 198-352 (516)
216 cd05741 Ig_CEACAM_D1_like Firs 98.6 2.2E-07 4.7E-12 81.5 8.9 75 20-95 1-91 (92)
217 cd05845 Ig2_L1-CAM_like Second 98.6 1.2E-07 2.6E-12 81.8 6.8 70 106-175 10-83 (95)
218 cd05717 Ig1_Necl-1-3_like Firs 98.6 4.5E-07 9.7E-12 80.0 10.7 89 195-285 4-95 (95)
219 cd05862 Ig1_VEGFR First immuno 98.6 2.9E-07 6.3E-12 79.1 8.9 73 114-186 1-85 (86)
220 smart00409 IG Immunoglobulin. 98.6 8.1E-07 1.8E-11 76.2 11.8 79 107-185 2-85 (86)
221 smart00410 IG_like Immunoglobu 98.6 8.1E-07 1.8E-11 76.2 11.8 79 107-185 2-85 (86)
222 cd05751 Ig1_LILRB1_like First 98.6 1.5E-07 3.3E-12 82.0 7.0 87 5-96 2-90 (91)
223 cd05775 Ig_SLAM-CD84_like_N N- 98.6 2.9E-07 6.2E-12 81.3 8.8 80 18-97 2-97 (97)
224 TIGR00864 PCC polycystin catio 98.6 0.013 2.8E-07 77.5 60.1 318 14-381 1706-2041(2740)
225 TIGR00864 PCC polycystin catio 98.6 0.013 2.9E-07 77.4 56.7 363 10-422 1346-1735(2740)
226 cd05879 Ig_P0 Immunoglobulin ( 98.5 4.5E-07 9.8E-12 82.3 9.9 75 11-85 4-104 (116)
227 cd05897 Ig2_IL1R2_like Second 98.5 3E-07 6.5E-12 79.6 7.9 78 108-185 4-93 (95)
228 cd05896 Ig1_IL1RAPL-1_like Fir 98.5 5.3E-07 1.2E-11 78.1 9.2 73 13-86 8-95 (104)
229 KOG4258|consensus 98.5 8.8E-07 1.9E-11 100.9 12.8 136 547-685 491-652 (1025)
230 cd00063 FN3 Fibronectin type 3 98.5 1.2E-06 2.7E-11 76.2 11.4 88 644-733 3-91 (93)
231 KOG4802|consensus 98.5 1.4E-06 2.9E-11 91.1 13.0 169 552-726 154-341 (516)
232 PF00047 ig: Immunoglobulin do 98.5 1.1E-07 2.5E-12 76.8 4.2 59 20-80 1-64 (64)
233 KOG0196|consensus 98.5 2.8E-06 6.1E-11 96.6 16.1 135 343-502 397-535 (996)
234 cd05881 Ig1_Necl-2 First (N-te 98.5 1.4E-06 3.1E-11 75.6 10.7 70 13-83 5-84 (95)
235 cd07690 Ig1_CD4 First immunogl 98.5 4.7E-07 1E-11 78.6 7.4 68 109-176 2-90 (94)
236 cd05896 Ig1_IL1RAPL-1_like Fir 98.4 1.1E-06 2.4E-11 76.2 9.0 78 108-185 9-104 (104)
237 cd04983 IgV_TCR_alpha_like Imm 98.4 9.1E-07 2E-11 80.4 9.2 75 9-84 2-93 (109)
238 PF00047 ig: Immunoglobulin do 98.4 4.3E-07 9.2E-12 73.4 6.2 57 114-170 1-64 (64)
239 cd05862 Ig1_VEGFR First immuno 98.4 9.5E-07 2.1E-11 75.9 8.3 83 203-286 1-85 (86)
240 cd05885 Ig2_Necl-4 Second immu 98.4 1.1E-06 2.4E-11 73.2 8.2 68 117-184 2-79 (80)
241 PHA03376 BARF1; Provisional 98.4 9.2E-06 2E-10 76.6 14.9 120 108-227 20-163 (221)
242 cd05774 Ig_CEACAM_D1 First imm 98.4 2.1E-06 4.5E-11 76.3 10.1 81 105-185 4-105 (105)
243 cd05872 Ig_Sema4B_like Immunog 98.4 1.9E-06 4.2E-11 72.8 8.8 77 107-185 4-82 (85)
244 cd05759 Ig2_KIRREL3-like Secon 98.4 1.8E-06 3.9E-11 73.7 8.4 63 22-85 1-70 (82)
245 cd05900 Ig_Aggrecan Immunoglob 98.3 3.3E-06 7E-11 76.1 10.2 78 19-97 1-109 (112)
246 cd05860 Ig4_SCFR Fourth immuno 98.3 4.5E-06 9.8E-11 72.2 10.4 80 107-186 11-100 (101)
247 cd05899 IgV_TCR_beta Immunoglo 98.3 2.7E-06 6E-11 77.3 9.6 73 9-83 2-94 (110)
248 cd05880 Ig_EVA1 Immunoglobulin 98.3 2.3E-06 5E-11 78.1 9.0 85 11-95 4-114 (115)
249 cd04980 IgV_L_kappa Immunoglob 98.3 2.4E-06 5.1E-11 77.1 8.6 75 8-83 3-93 (106)
250 cd05881 Ig1_Necl-2 First (N-te 98.3 8.6E-06 1.9E-10 70.7 11.2 76 196-272 5-83 (95)
251 PF13927 Ig_3: Immunoglobulin 98.3 1.5E-06 3.2E-11 72.7 6.0 75 5-82 1-75 (75)
252 cd05877 Ig_LP_like Immunoglobu 98.3 5.7E-06 1.2E-10 74.6 10.2 78 19-97 1-103 (106)
253 PF10179 DUF2369: Uncharacteri 98.3 0.00029 6.4E-09 73.7 23.9 133 597-736 125-297 (300)
254 cd05718 Ig1_PVR_like First imm 98.3 4.9E-06 1.1E-10 73.9 9.2 75 21-96 1-97 (98)
255 cd05878 Ig_Aggrecan_like Immun 98.2 8E-06 1.7E-10 73.8 10.5 78 20-98 2-108 (110)
256 cd05846 Ig1_MRC-OX-2_like Firs 98.2 5.2E-06 1.1E-10 73.4 9.1 78 20-97 1-97 (97)
257 cd05860 Ig4_SCFR Fourth immuno 98.2 9.4E-06 2E-10 70.3 10.0 87 196-286 11-100 (101)
258 cd05715 Ig_P0-like Immunoglobu 98.2 6.2E-06 1.3E-10 75.6 9.6 75 11-85 4-104 (116)
259 PF13927 Ig_3: Immunoglobulin 98.2 2.2E-06 4.7E-11 71.7 6.1 73 99-172 1-75 (75)
260 cd05741 Ig_CEACAM_D1_like Firs 98.2 5.6E-06 1.2E-10 72.5 8.9 72 114-185 1-92 (92)
261 cd05751 Ig1_LILRB1_like First 98.2 3.9E-06 8.4E-11 73.1 7.4 73 99-173 2-75 (91)
262 cd05887 Ig1_Nectin-3_like Firs 98.2 9E-06 1.9E-10 70.7 9.5 75 21-96 1-95 (96)
263 cd05714 Ig_CSPGs_LP Immunoglob 98.2 1E-05 2.2E-10 73.0 10.0 78 19-97 1-103 (106)
264 PF07686 V-set: Immunoglobulin 98.2 4.3E-06 9.4E-11 76.5 7.4 90 7-96 3-114 (114)
265 cd05713 Ig_MOG_like Immunoglob 98.2 1E-05 2.2E-10 72.1 9.6 76 20-96 1-99 (100)
266 cd05886 Ig1_Nectin-1_like Firs 98.2 1.3E-05 2.9E-10 70.4 9.8 76 21-97 1-99 (99)
267 cd04983 IgV_TCR_alpha_like Imm 98.2 7.9E-06 1.7E-10 74.2 8.6 71 104-174 3-93 (109)
268 cd07706 IgV_TCR_delta Immunogl 98.1 1.2E-05 2.5E-10 73.9 9.5 75 8-82 2-93 (116)
269 cd00099 IgV Immunoglobulin var 98.1 6.3E-06 1.4E-10 74.2 7.3 70 15-85 1-91 (105)
270 PHA02987 Ig domain OX-2-like p 98.1 2.2E-05 4.7E-10 75.0 10.7 86 14-99 24-124 (189)
271 cd05759 Ig2_KIRREL3-like Secon 98.1 1.1E-05 2.4E-10 68.8 8.1 69 117-185 2-82 (82)
272 cd05888 Ig1_Nectin-4_like Frst 98.1 1.8E-05 3.8E-10 70.3 9.4 75 21-96 1-99 (100)
273 cd05902 Ig_Neurocan Immunoglob 98.1 1.6E-05 3.6E-10 71.2 9.2 77 20-97 2-107 (110)
274 cd05711 Ig_FcalphaRI Immunoglo 98.1 9.4E-06 2E-10 71.0 7.0 75 5-82 1-76 (94)
275 cd05899 IgV_TCR_beta Immunoglo 98.1 1.6E-05 3.4E-10 72.3 8.7 70 103-173 2-94 (110)
276 cd04982 IgV_TCR_gamma Immunogl 98.1 1.2E-05 2.6E-10 73.8 8.0 73 9-82 2-98 (116)
277 cd00063 FN3 Fibronectin type 3 98.1 2.7E-05 5.8E-10 67.6 9.7 85 548-634 5-91 (93)
278 cd05889 Ig1_DNAM-1_like First 98.1 3.7E-05 8.1E-10 67.0 10.2 66 21-86 1-86 (96)
279 cd05713 Ig_MOG_like Immunoglob 98.1 2.5E-05 5.4E-10 69.6 9.4 72 114-185 1-99 (100)
280 cd04984 IgV_L_lambda Immunoglo 98.0 1.8E-05 4E-10 70.1 8.1 66 16-82 2-84 (98)
281 cd05755 Ig2_ICAM-1_like Second 98.0 1.8E-05 3.9E-10 69.0 7.5 80 6-85 2-86 (100)
282 cd05716 Ig_pIgR Immunoglobulin 98.0 2.7E-05 5.9E-10 69.0 8.5 69 15-83 2-86 (98)
283 cd05883 Ig2_Necl-2 Second immu 98.0 5E-05 1.1E-09 63.5 9.3 74 23-97 2-80 (82)
284 cd05718 Ig1_PVR_like First imm 98.0 4.6E-05 1E-09 67.6 9.8 72 115-186 1-98 (98)
285 smart00060 FN3 Fibronectin typ 98.0 6.2E-05 1.3E-09 63.4 10.2 77 644-724 3-82 (83)
286 PF14575 EphA2_TM: Ephrin type 98.0 6.5E-07 1.4E-11 73.2 -2.1 21 815-835 48-68 (75)
287 cd05877 Ig_LP_like Immunoglobu 98.0 5.1E-05 1.1E-09 68.4 9.9 85 202-287 1-104 (106)
288 cd05714 Ig_CSPGs_LP Immunoglob 97.9 5.8E-05 1.3E-09 68.0 9.9 85 202-287 1-104 (106)
289 cd05775 Ig_SLAM-CD84_like_N N- 97.9 3E-05 6.6E-10 68.4 7.8 74 112-185 2-96 (97)
290 cd05901 Ig_Versican Immunoglob 97.9 8.5E-05 1.9E-09 66.7 10.4 77 20-97 2-114 (117)
291 KOG1480|consensus 97.9 3.1E-06 6.8E-11 95.5 1.3 180 4-186 23-219 (909)
292 cd04980 IgV_L_kappa Immunoglob 97.9 5E-05 1.1E-09 68.4 8.4 72 102-173 3-93 (106)
293 cd05900 Ig_Aggrecan Immunoglob 97.9 0.00013 2.7E-09 65.8 10.4 85 202-287 1-110 (112)
294 cd07705 Ig2_Necl-1 Second immu 97.9 7.1E-05 1.5E-09 63.7 8.3 61 23-84 2-69 (83)
295 cd05879 Ig_P0 Immunoglobulin ( 97.8 0.00017 3.8E-09 65.4 10.9 83 194-277 4-106 (116)
296 cd00099 IgV Immunoglobulin var 97.8 6.3E-05 1.4E-09 67.7 7.8 66 110-175 2-91 (105)
297 cd05712 Ig_Siglec_N Immunoglob 97.8 0.0001 2.2E-09 67.9 9.2 73 11-83 5-102 (119)
298 cd04982 IgV_TCR_gamma Immunogl 97.8 7.5E-05 1.6E-09 68.6 8.2 69 104-172 3-98 (116)
299 cd05761 Ig2_Necl-1-4_like Seco 97.8 0.00011 2.4E-09 62.5 8.5 62 23-86 2-70 (82)
300 PF07686 V-set: Immunoglobulin 97.8 0.00011 2.4E-09 67.0 9.3 81 105-185 7-114 (114)
301 cd04981 IgV_H Immunoglobulin ( 97.8 0.0001 2.2E-09 67.5 8.7 73 10-82 2-97 (117)
302 cd05886 Ig1_Nectin-1_like Firs 97.8 0.00022 4.8E-09 62.7 10.2 71 116-186 2-99 (99)
303 cd05888 Ig1_Nectin-4_like Frst 97.7 0.00022 4.7E-09 63.3 9.8 70 116-185 2-99 (100)
304 cd05878 Ig_Aggrecan_like Immun 97.7 0.00025 5.4E-09 64.1 10.2 85 202-287 1-108 (110)
305 cd07694 Ig2_CD4 Second immunog 97.7 0.00036 7.9E-09 58.2 10.0 77 108-186 8-86 (88)
306 cd05711 Ig_FcalphaRI Immunoglo 97.7 0.00012 2.6E-09 64.0 7.7 71 100-172 2-76 (94)
307 KOG0613|consensus 97.7 0.00018 3.8E-09 87.2 11.5 447 105-625 235-711 (1205)
308 cd05887 Ig1_Nectin-3_like Firs 97.7 0.00028 6E-09 61.5 9.5 72 115-186 1-96 (96)
309 cd05846 Ig1_MRC-OX-2_like Firs 97.7 0.00021 4.6E-09 63.0 9.0 73 114-186 1-97 (97)
310 cd05883 Ig2_Necl-2 Second immu 97.7 0.00025 5.3E-09 59.4 8.7 70 117-186 2-80 (82)
311 KOG3632|consensus 97.7 9.9E-05 2.1E-09 85.4 8.3 263 401-729 581-860 (1335)
312 cd05755 Ig2_ICAM-1_like Second 97.7 0.00019 4E-09 62.8 8.1 74 102-175 4-86 (100)
313 cd07700 IgV_CD8_beta Immunoglo 97.7 0.00015 3.3E-09 65.3 7.8 67 16-82 2-93 (107)
314 cd05902 Ig_Neurocan Immunoglob 97.7 0.00022 4.8E-09 64.0 8.7 75 113-187 1-108 (110)
315 PHA03269 envelope glycoprotein 97.6 0.0062 1.3E-07 66.2 20.4 157 62-228 290-470 (566)
316 cd05884 Ig2_Necl-3 Second immu 97.6 0.00023 4.9E-09 60.5 7.8 63 23-85 2-70 (83)
317 PF09294 Interfer-bind: Interf 97.6 0.0003 6.6E-09 63.3 9.0 90 643-735 4-105 (106)
318 KOG1480|consensus 97.6 1.6E-05 3.5E-10 90.0 0.6 100 1-102 125-224 (909)
319 cd05901 Ig_Versican Immunoglob 97.6 0.00069 1.5E-08 60.9 10.4 74 114-187 2-115 (117)
320 cd05715 Ig_P0-like Immunoglobu 97.6 0.0007 1.5E-08 62.0 10.7 82 194-276 4-105 (116)
321 smart00060 FN3 Fibronectin typ 97.5 0.00065 1.4E-08 56.9 9.6 80 400-490 3-82 (83)
322 cd00098 IgC Immunoglobulin Con 97.5 0.00011 2.5E-09 64.6 4.9 68 18-85 11-86 (95)
323 cd05880 Ig_EVA1 Immunoglobulin 97.5 0.00081 1.7E-08 61.4 10.4 82 194-276 4-104 (115)
324 cd07706 IgV_TCR_delta Immunogl 97.4 0.00057 1.2E-08 62.7 8.2 70 103-172 3-93 (116)
325 PHA03270 envelope glycoprotein 97.4 0.012 2.5E-07 63.4 18.6 158 62-229 183-361 (466)
326 cd07700 IgV_CD8_beta Immunoglo 97.4 0.00055 1.2E-08 61.7 7.5 63 110-172 2-93 (107)
327 PHA02987 Ig domain OX-2-like p 97.4 0.0017 3.7E-08 62.4 10.9 90 197-287 24-123 (189)
328 cd04984 IgV_L_lambda Immunoglo 97.4 0.00055 1.2E-08 60.6 7.3 73 199-273 2-85 (98)
329 cd05720 Ig_CD8_alpha Immunoglo 97.3 0.00055 1.2E-08 61.2 6.6 65 16-81 2-89 (104)
330 cd05889 Ig1_DNAM-1_like First 97.3 0.0022 4.8E-08 55.9 9.6 69 115-183 1-93 (96)
331 KOG4367|consensus 97.3 0.00031 6.7E-09 74.0 4.8 82 654-738 451-532 (699)
332 cd07705 Ig2_Necl-1 Second immu 97.2 0.0017 3.7E-08 55.2 8.5 59 117-175 2-70 (83)
333 cd00098 IgC Immunoglobulin Con 97.2 0.0014 3E-08 57.6 8.3 71 201-276 11-87 (95)
334 cd00096 Ig Immunoglobulin doma 97.2 0.00085 1.9E-08 54.4 6.5 61 23-84 1-66 (74)
335 cd05716 Ig_pIgR Immunoglobulin 97.2 0.0016 3.5E-08 57.6 8.1 75 199-274 3-87 (98)
336 cd05761 Ig2_Necl-1-4_like Seco 97.2 0.0033 7.2E-08 53.4 9.6 65 206-277 2-71 (82)
337 KOG0613|consensus 97.1 0.0014 3E-08 79.8 9.4 425 21-493 206-714 (1205)
338 cd07694 Ig2_CD4 Second immunog 97.1 0.0053 1.1E-07 51.4 9.6 76 197-285 8-85 (88)
339 cd00096 Ig Immunoglobulin doma 97.1 0.0022 4.8E-08 51.9 7.5 58 117-174 1-66 (74)
340 PHA03269 envelope glycoprotein 97.0 0.056 1.2E-06 59.1 19.2 198 151-364 289-511 (566)
341 PHA03270 envelope glycoprotein 97.0 0.074 1.6E-06 57.5 19.9 200 150-364 181-400 (466)
342 KOG4152|consensus 97.0 0.0028 6E-08 68.8 9.3 127 603-733 650-794 (830)
343 PHA03273 envelope glycoprotein 97.0 0.053 1.2E-06 59.1 18.8 154 63-226 200-376 (486)
344 cd05712 Ig_Siglec_N Immunoglob 97.0 0.0034 7.5E-08 57.7 8.8 79 194-273 5-102 (119)
345 cd07698 IgC_MHC_I_alpha3 Class 97.0 0.0022 4.7E-08 56.0 7.1 76 6-84 3-83 (93)
346 PF08205 C2-set_2: CD80-like C 97.0 0.0014 3E-08 56.8 5.7 64 20-85 14-85 (89)
347 smart00406 IGv Immunoglobulin 97.0 0.0017 3.7E-08 54.9 6.1 58 22-80 1-81 (81)
348 PF10179 DUF2369: Uncharacteri 96.9 0.29 6.3E-06 51.7 22.6 138 464-637 127-297 (300)
349 PHA03273 envelope glycoprotein 96.9 0.054 1.2E-06 59.1 17.5 198 152-364 199-420 (486)
350 smart00407 IGc1 Immunoglobulin 96.9 0.0033 7.1E-08 52.4 6.8 62 22-83 1-70 (75)
351 cd05720 Ig_CD8_alpha Immunoglo 96.9 0.0034 7.4E-08 56.1 7.2 72 199-272 2-90 (104)
352 cd05719 Ig2_PVR_like Second im 96.9 0.0059 1.3E-07 53.2 8.5 73 9-84 4-82 (95)
353 cd05766 IgC_MHC_II_beta Class 96.9 0.0045 9.8E-08 54.0 7.7 67 18-84 12-83 (94)
354 PHA02914 Immunoglobulin-like d 96.8 0.91 2E-05 48.6 30.5 123 199-333 275-422 (500)
355 cd05884 Ig2_Necl-3 Second immu 96.8 0.0047 1E-07 52.4 7.5 58 117-174 2-69 (83)
356 cd05772 IgC_SIRP Signal-regula 96.8 0.005 1.1E-07 55.4 8.0 69 14-84 15-92 (111)
357 cd04981 IgV_H Immunoglobulin ( 96.8 0.0066 1.4E-07 55.5 8.5 78 194-272 3-97 (117)
358 PF08205 C2-set_2: CD80-like C 96.8 0.0055 1.2E-07 53.0 7.6 62 114-175 14-85 (89)
359 cd07698 IgC_MHC_I_alpha3 Class 96.7 0.019 4.2E-07 50.0 10.6 80 188-275 2-84 (93)
360 cd05770 IgC_beta2m Class I maj 96.7 0.0049 1.1E-07 53.4 6.7 66 17-83 12-82 (93)
361 cd05772 IgC_SIRP Signal-regula 96.7 0.014 3E-07 52.6 9.7 72 197-276 15-94 (111)
362 cd05847 IgC_CH2_IgE CH2 domain 96.6 0.0055 1.2E-07 53.4 6.4 74 11-84 5-86 (94)
363 cd07703 Ig2_Nectin-2_like Seco 96.6 0.011 2.3E-07 51.5 8.0 68 15-84 10-82 (95)
364 cd07699 IgC_L Immunoglobulin C 96.6 0.0026 5.7E-08 56.2 4.3 73 12-84 9-89 (100)
365 cd07692 Ig_CD3_epsilon Immunog 96.6 0.0053 1.1E-07 48.1 5.3 52 17-82 4-55 (65)
366 cd07692 Ig_CD3_epsilon Immunog 96.5 0.0062 1.3E-07 47.8 5.1 53 111-173 4-56 (65)
367 PHA03271 envelope glycoprotein 96.4 0.36 7.9E-06 51.9 19.6 158 62-229 208-387 (490)
368 PHA03271 envelope glycoprotein 96.4 0.3 6.5E-06 52.5 19.0 199 152-364 208-429 (490)
369 smart00406 IGv Immunoglobulin 96.4 0.009 1.9E-07 50.4 6.6 64 205-269 1-80 (81)
370 cd05721 IgV_CTLA-4 Immunoglobu 96.4 0.015 3.2E-07 51.8 7.9 70 9-80 2-93 (115)
371 PF01108 Tissue_fac: Tissue fa 96.4 0.031 6.8E-07 50.2 10.4 81 641-725 21-105 (107)
372 cd07699 IgC_L Immunoglobulin C 96.4 0.013 2.7E-07 51.9 7.6 72 197-275 11-90 (100)
373 cd07696 IgC_CH3 CH3 domain (th 96.4 0.023 5E-07 49.7 8.9 75 194-275 5-87 (96)
374 smart00407 IGc1 Immunoglobulin 96.4 0.021 4.6E-07 47.4 8.3 64 206-274 2-71 (75)
375 cd05847 IgC_CH2_IgE CH2 domain 96.3 0.017 3.8E-07 50.2 7.7 66 112-177 12-89 (94)
376 PHA02982 hypothetical protein; 96.3 0.036 7.9E-07 53.5 10.1 121 13-139 32-173 (251)
377 PF01108 Tissue_fac: Tissue fa 96.2 0.038 8.2E-07 49.6 9.8 78 547-626 25-105 (107)
378 cd05768 IgC_CH4 CH4 domain (fo 96.2 0.0066 1.4E-07 53.8 4.7 74 11-84 7-91 (102)
379 cd07696 IgC_CH3 CH3 domain (th 96.2 0.0073 1.6E-07 52.8 4.8 75 10-84 4-86 (96)
380 KOG4228|consensus 96.2 0.018 3.8E-07 69.6 9.4 253 358-736 1-253 (1087)
381 cd07704 Ig2_Nectin-3-4_like Se 96.2 0.019 4.2E-07 49.8 7.2 68 15-84 11-84 (97)
382 cd05767 IgC_MHC_II_alpha Class 96.1 0.066 1.4E-06 46.6 10.5 66 201-274 13-84 (94)
383 cd05767 IgC_MHC_II_alpha Class 96.1 0.037 7.9E-07 48.2 8.8 60 307-366 14-83 (94)
384 cd05719 Ig2_PVR_like Second im 96.1 0.052 1.1E-06 47.3 9.6 70 202-278 14-86 (95)
385 cd05770 IgC_beta2m Class I maj 96.1 0.046 1E-06 47.4 9.1 61 306-366 13-82 (93)
386 cd05769 IgC_TCR_beta T cell re 96.1 0.011 2.4E-07 53.4 5.5 80 6-85 3-93 (115)
387 KOG4367|consensus 96.0 0.0061 1.3E-07 64.5 4.0 82 554-639 449-532 (699)
388 PF09294 Interfer-bind: Interf 96.0 0.042 9.2E-07 49.3 9.1 82 550-636 8-105 (106)
389 COG3401 Fibronectin type 3 dom 96.0 0.59 1.3E-05 49.3 18.2 248 411-726 83-333 (343)
390 cd05766 IgC_MHC_II_beta Class 96.0 0.091 2E-06 45.8 10.6 68 201-276 12-85 (94)
391 PF07654 C1-set: Immunoglobuli 95.9 0.02 4.3E-07 48.7 5.9 63 19-84 7-77 (83)
392 cd05769 IgC_TCR_beta T cell re 95.8 0.057 1.2E-06 48.9 8.8 77 195-278 10-96 (115)
393 cd07697 IgC_TCR_gamma T cell r 95.8 0.016 3.5E-07 50.5 4.9 71 12-84 8-85 (96)
394 PHA02633 hypothetical protein; 95.7 0.026 5.7E-07 43.3 5.3 41 149-189 16-56 (63)
395 PHA02633 hypothetical protein; 95.7 0.029 6.4E-07 43.1 5.5 41 59-100 16-56 (63)
396 cd05768 IgC_CH4 CH4 domain (fo 95.7 0.021 4.5E-07 50.7 5.7 66 109-174 11-91 (102)
397 cd07691 Ig_CD3_gamma_delta Imm 95.7 0.026 5.7E-07 44.6 5.4 50 113-172 5-54 (69)
398 cd07691 Ig_CD3_gamma_delta Imm 95.7 0.033 7.1E-07 44.1 5.9 51 18-82 4-54 (69)
399 PF11465 Receptor_2B4: Natural 95.5 0.13 2.8E-06 44.6 9.3 46 52-97 61-107 (108)
400 cd07689 Ig2_VCAM-1 Second immu 95.5 0.039 8.4E-07 47.6 6.2 66 17-83 12-85 (99)
401 cd07704 Ig2_Nectin-3-4_like Se 95.4 0.15 3.3E-06 44.2 9.7 71 199-276 12-86 (97)
402 cd07697 IgC_TCR_gamma T cell r 95.3 0.078 1.7E-06 46.2 7.6 68 298-366 6-84 (96)
403 cd07703 Ig2_Nectin-2_like Seco 95.3 0.13 2.8E-06 44.8 8.8 70 204-280 16-88 (95)
404 PF08204 V-set_CD47: CD47 immu 95.2 0.067 1.4E-06 48.8 7.0 74 112-186 25-120 (130)
405 PF08204 V-set_CD47: CD47 immu 95.1 0.027 5.8E-07 51.4 4.1 78 17-96 24-119 (130)
406 PF07654 C1-set: Immunoglobuli 94.9 0.25 5.5E-06 41.8 9.7 67 202-276 7-79 (83)
407 cd04985 IgC_CH1 CH1 domain (fi 94.8 0.15 3.2E-06 44.5 8.0 61 113-174 15-87 (95)
408 cd04985 IgC_CH1 CH1 domain (fi 94.8 0.28 6.1E-06 42.8 9.7 65 202-274 15-87 (95)
409 PF09067 EpoR_lig-bind: Erythr 94.4 0.34 7.3E-06 42.9 9.3 78 546-625 10-95 (104)
410 cd04986 IgC_CH2 CH2 domain (se 93.8 0.18 3.9E-06 44.1 6.3 76 293-368 4-90 (99)
411 PF11465 Receptor_2B4: Natural 93.7 1.1 2.4E-05 39.0 10.7 92 93-186 8-107 (108)
412 PF07354 Sp38: Zona-pellucida- 93.6 0.093 2E-06 53.2 4.7 49 33-82 10-58 (271)
413 cd07689 Ig2_VCAM-1 Second immu 93.5 0.28 6E-06 42.4 6.7 63 110-173 11-85 (99)
414 cd05721 IgV_CTLA-4 Immunoglobu 93.3 0.38 8.3E-06 42.9 7.6 75 194-269 4-92 (115)
415 cd04986 IgC_CH2 CH2 domain (se 93.2 0.47 1E-05 41.5 7.9 74 195-275 11-90 (99)
416 KOG4806|consensus 93.1 4.9 0.00011 42.5 16.2 125 606-737 290-448 (454)
417 PHA03042 CD47-like protein; Pr 93.0 0.27 5.7E-06 50.1 6.9 71 112-185 29-104 (286)
418 PHA02914 Immunoglobulin-like d 93.0 16 0.00034 39.7 28.2 107 302-441 273-410 (500)
419 COG3401 Fibronectin type 3 dom 92.8 2.5 5.5E-05 44.8 13.8 164 556-734 82-251 (343)
420 KOG4597|consensus 92.5 0.18 3.9E-06 55.0 5.2 93 190-287 198-293 (560)
421 KOG3632|consensus 91.8 1.2 2.5E-05 53.2 10.9 174 396-629 670-859 (1335)
422 PHA02982 hypothetical protein; 91.3 2.1 4.6E-05 41.8 10.3 116 106-227 31-172 (251)
423 KOG4597|consensus 91.0 0.28 6E-06 53.7 4.5 85 102-186 199-292 (560)
424 PHA03282 envelope glycoprotein 90.7 9.3 0.0002 42.3 15.6 45 52-97 116-161 (540)
425 KOG4152|consensus 90.6 0.75 1.6E-05 50.7 7.4 34 469-502 651-684 (830)
426 PF15102 TMEM154: TMEM154 prot 90.5 0.37 8.1E-06 44.4 4.4 18 786-803 70-87 (146)
427 PF07354 Sp38: Zona-pellucida- 89.9 0.45 9.8E-06 48.4 4.7 47 320-366 12-59 (271)
428 PHA03042 CD47-like protein; Pr 89.7 1.5 3.2E-05 44.9 8.2 60 19-86 30-95 (286)
429 PF09067 EpoR_lig-bind: Erythr 89.7 1.5 3.3E-05 38.7 7.5 81 396-490 6-95 (104)
430 PF06328 Lep_receptor_Ig: Ig-l 89.4 1.8 3.9E-05 37.1 7.4 66 105-170 9-81 (89)
431 KOG4228|consensus 89.4 0.84 1.8E-05 55.8 7.3 106 553-665 173-278 (1087)
432 PF01299 Lamp: Lysosome-associ 89.2 0.76 1.7E-05 50.0 6.4 19 711-730 243-261 (306)
433 PF09240 IL6Ra-bind: Interleuk 88.6 7 0.00015 34.3 11.0 80 547-626 2-87 (99)
434 COG4733 Phage-related protein, 88.2 4.4 9.6E-05 48.1 11.7 126 597-728 657-786 (952)
435 PF06328 Lep_receptor_Ig: Ig-l 88.1 2.7 5.8E-05 36.0 7.7 70 9-81 7-82 (89)
436 PHA03286 envelope glycoprotein 88.1 20 0.00042 39.8 15.6 76 61-136 127-226 (492)
437 PF02124 Marek_A: Marek's dise 86.7 37 0.00081 34.1 15.9 133 36-172 7-159 (211)
438 PHA03052 Hypothetical protein; 85.8 2.6 5.7E-05 33.2 5.5 47 11-57 3-54 (69)
439 PF02439 Adeno_E3_CR2: Adenovi 85.4 0.24 5.2E-06 33.8 -0.1 16 776-791 7-22 (38)
440 PF02480 Herpes_gE: Alphaherpe 85.2 4.2 9.1E-05 46.2 9.5 77 60-136 88-190 (439)
441 PF05454 DAG1: Dystroglycan (D 84.9 0.28 6.1E-06 51.6 0.0 18 647-664 39-56 (290)
442 PF05790 C2-set: Immunoglobuli 83.7 7.9 0.00017 32.4 8.1 52 128-185 26-78 (80)
443 PF07495 Y_Y_Y: Y_Y_Y domain; 83.5 3.7 7.9E-05 32.8 6.0 28 700-728 30-57 (66)
444 PHA03283 envelope glycoprotein 83.5 36 0.00078 38.6 15.2 75 61-136 134-234 (542)
445 KOG1225|consensus 82.6 2.5 5.4E-05 48.5 6.2 154 549-716 371-524 (525)
446 PF09240 IL6Ra-bind: Interleuk 82.2 8.3 0.00018 33.9 8.3 79 401-491 2-87 (99)
447 PRK14081 triple tyrosine motif 82.0 1.2E+02 0.0027 36.3 44.3 357 68-489 250-652 (667)
448 PLN02533 probable purple acid 81.5 12 0.00026 42.8 11.4 86 641-739 40-137 (427)
449 PF12273 RCR: Chitin synthesis 79.9 0.39 8.5E-06 44.7 -1.0 6 776-781 2-7 (130)
450 PF01102 Glycophorin_A: Glycop 78.7 0.43 9.4E-06 43.1 -1.1 14 788-801 78-91 (122)
451 PF03921 ICAM_N: Intercellular 78.6 27 0.00059 30.0 9.7 83 7-101 5-90 (91)
452 PHA02865 MHC-like TNF binding 76.8 5.7 0.00012 42.8 6.4 22 22-43 216-238 (338)
453 PF02124 Marek_A: Marek's dise 76.5 64 0.0014 32.5 13.0 133 219-364 8-158 (211)
454 PHA03052 Hypothetical protein; 75.9 9.7 0.00021 30.1 5.6 49 195-243 4-55 (69)
455 COG4733 Phage-related protein, 75.2 20 0.00044 42.9 10.5 38 454-493 650-687 (952)
456 PF07495 Y_Y_Y: Y_Y_Y domain; 75.0 8 0.00017 30.8 5.5 36 454-492 20-55 (66)
457 PF01034 Syndecan: Syndecan do 74.1 0.97 2.1E-05 35.2 -0.1 20 778-797 15-34 (64)
458 PF07204 Orthoreo_P10: Orthore 73.0 0.54 1.2E-05 39.2 -1.8 30 769-798 35-64 (98)
459 PF04478 Mid2: Mid2 like cell 71.0 1.1 2.4E-05 41.7 -0.5 14 789-802 65-78 (154)
460 PLN02533 probable purple acid 71.0 12 0.00025 42.9 7.5 84 546-638 43-135 (427)
461 PF15050 SCIMP: SCIMP protein 70.8 0.86 1.9E-05 39.9 -1.2 35 774-808 7-41 (133)
462 PF08693 SKG6: Transmembrane a 70.5 1.2 2.7E-05 31.1 -0.3 6 796-801 33-38 (40)
463 PF06832 BiPBP_C: Penicillin-B 70.4 46 0.001 28.4 9.5 72 293-372 10-86 (89)
464 PF14991 MLANA: Protein melan- 70.0 1 2.2E-05 39.3 -0.9 14 792-805 41-54 (118)
465 PF12877 DUF3827: Domain of un 69.8 1.8 3.9E-05 49.8 0.6 29 773-801 267-297 (684)
466 PF02009 Rifin_STEVOR: Rifin/s 69.4 0.86 1.9E-05 48.5 -1.8 17 785-801 267-283 (299)
467 PHA02865 MHC-like TNF binding 69.3 15 0.00033 39.6 7.4 57 310-366 216-303 (338)
468 cd05890 Ig2_Nectin-1_like Seco 67.7 40 0.00087 29.0 8.0 71 206-283 23-96 (98)
469 TIGR03503 conserved hypothetic 67.3 88 0.0019 34.6 12.7 27 601-627 174-200 (374)
470 TIGR01477 RIFIN variant surfac 66.6 1.5 3.2E-05 47.2 -0.8 30 778-807 314-343 (353)
471 PTZ00046 rifin; Provisional 66.3 1.5 3.2E-05 47.3 -0.8 29 779-807 320-348 (358)
472 PF03921 ICAM_N: Intercellular 65.7 69 0.0015 27.6 9.2 81 103-190 7-90 (91)
473 PF06024 DUF912: Nucleopolyhed 65.6 9.6 0.00021 33.6 4.3 25 778-802 66-90 (101)
474 PF05790 C2-set: Immunoglobuli 65.2 70 0.0015 26.8 9.0 38 35-81 26-63 (80)
475 PF04478 Mid2: Mid2 like cell 63.6 4.1 9E-05 38.0 1.6 16 788-803 61-76 (154)
476 KOG1026|consensus 62.5 10 0.00022 45.5 5.0 157 109-287 202-364 (774)
477 PF15330 SIT: SHP2-interacting 62.3 7.7 0.00017 34.4 3.0 20 778-797 3-22 (107)
478 PF12191 stn_TNFRSF12A: Tumour 59.6 3.2 7E-05 37.1 0.2 32 772-803 75-106 (129)
479 PTZ00382 Variant-specific surf 59.6 4.6 0.0001 35.1 1.1 14 789-802 82-95 (96)
480 PF07353 Uroplakin_II: Uroplak 57.1 27 0.00059 32.7 5.6 23 699-721 102-124 (184)
481 PF05568 ASFV_J13L: African sw 56.9 3.2 7E-05 37.6 -0.3 12 922-933 147-158 (189)
482 PF10577 UPF0560: Uncharacteri 56.0 5 0.00011 47.8 1.0 19 787-805 286-304 (807)
483 PF14292 SusE: SusE outer memb 55.7 1.1E+02 0.0024 27.9 9.7 70 648-719 37-121 (122)
484 PF15065 NCU-G1: Lysosomal tra 55.1 3.3E+02 0.0071 30.1 15.3 24 598-621 157-183 (350)
485 KOG1026|consensus 54.8 22 0.00049 42.8 6.0 159 14-189 201-366 (774)
486 PHA03240 envelope glycoprotein 54.4 23 0.0005 34.8 4.9 67 14-82 32-125 (258)
487 KOG1225|consensus 54.4 37 0.00081 39.3 7.5 111 460-617 413-524 (525)
488 TIGR01478 STEVOR variant surfa 54.0 4.3 9.3E-05 42.0 0.0 24 780-803 266-289 (295)
489 PF06365 CD34_antigen: CD34/Po 53.6 16 0.00035 36.4 3.9 28 775-802 100-129 (202)
490 PF06832 BiPBP_C: Penicillin-B 53.5 1.4E+02 0.0031 25.4 9.7 55 116-178 31-85 (89)
491 PHA03189 UL14 tegument protein 53.3 56 0.0012 34.3 7.7 74 11-84 58-156 (348)
492 PF11770 GAPT: GRB2-binding ad 53.0 15 0.00033 34.0 3.3 24 778-801 13-36 (158)
493 PF02010 REJ: REJ domain; Int 51.2 25 0.00055 40.5 5.9 278 22-318 2-327 (440)
494 PTZ00370 STEVOR; Provisional 49.3 4.9 0.00011 41.7 -0.4 26 779-804 261-286 (296)
495 PF01102 Glycophorin_A: Glycop 48.8 4.1 9E-05 36.9 -0.9 21 781-801 74-94 (122)
496 PHA03283 envelope glycoprotein 48.2 1E+02 0.0022 35.2 9.4 39 149-187 132-170 (542)
497 PF14292 SusE: SusE outer memb 47.0 1.9E+02 0.0041 26.3 9.8 66 552-619 39-120 (122)
498 PHA03281 envelope glycoprotein 46.8 1.8E+02 0.004 33.3 10.9 39 60-98 297-335 (642)
499 cd05890 Ig2_Nectin-1_like Seco 45.1 70 0.0015 27.6 5.8 71 115-185 21-98 (98)
500 KOG0200|consensus 44.5 1.8E+02 0.0039 35.2 11.8 195 56-286 8-221 (609)
No 1
>KOG4222|consensus
Probab=100.00 E-value=3.5e-84 Score=732.00 Aligned_cols=751 Identities=35% Similarity=0.632 Sum_probs=664.2
Q ss_pred CccccccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEE
Q psy574 1 ISLLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVV 80 (977)
Q Consensus 1 va~l~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a 80 (977)
||+||++|++.|+++.+..|+.++|+|..+.++|++.|.|.|||+.+......++.+..+|+|.|.+++++|+|+|.|++
T Consensus 127 vavlrddfrv~prd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~~~~~lisgG~LlIsnvrksD~GtY~CVa 206 (1281)
T KOG4222|consen 127 VAVLRDDFRVSPRDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDVPIIALISGGNLLISNVRKSDEGTYACVA 206 (1281)
T ss_pred EEEechhcccCcccccccccceeEEeccCCCCCCCCcceeecCCCccccccceeEEEecCCcEEEeccccCCCceeeeee
Confidence 68999999999999999999999999999999999999999999999766777888888999999999999999999999
Q ss_pred EecCceeeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceEEecc-ceEEEccCc
Q psy574 81 KNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPS-RSLQLSDVR 159 (977)
Q Consensus 81 ~n~~g~~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~~~-~~L~I~~v~ 159 (977)
+|+.|++++..++|.|+++|.|...|.+..+.+|..+.|.|.+.|+|.|.+.|.|++..++..++.+..+ .+|.|.+++
T Consensus 207 tNmvG~ReS~~A~lsv~e~P~f~~rp~~~~v~~g~~~~f~c~v~GdP~P~Vrwkk~~~~~P~~ry~i~~d~qtl~i~r~t 286 (1281)
T KOG4222|consen 207 TNMVGERESIPARLSVQEKPWFWKRPKDLAVLVGAAAEFDCRVGGDPQPTVRWKKDDPSLPRSRYSILDDTQTLRIDRVT 286 (1281)
T ss_pred cccccccccccceeeeccCCccccccccceeecccccccccccCCCCCCceeeeccCCCCCccceeeeeccccccccccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999877 899999999
Q ss_pred cCCCeEEEEEEEeCCeeEEEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecC---CCc
Q psy574 160 LEDAGEYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYP---GDR 236 (977)
Q Consensus 160 ~~D~G~Y~C~a~n~~g~~~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~---~~~ 236 (977)
..|+|.|.|.+.|..|...+.+.|+|+.+|.|...|.+..+..|..++|.|.+.|+|+|.++|.+.|....++. ...
T Consensus 287 p~deg~y~C~a~n~vG~l~asa~ltV~apP~f~kkp~dq~v~lg~~vt~pc~~~gnP~PavfW~keg~q~llf~~~p~~~ 366 (1281)
T KOG4222|consen 287 PTDEGTYVCPAENLVGGLEASATLTVQAPPSFGKKPRDQKVALGGTVTFPCETLGNPPPAVFWLKEGSQDLLFSASPPSS 366 (1281)
T ss_pred CCcccceeeeccccccccccccceEEecCcccccccCccccccCceEEeeeecCCCCCcceEEeccCcceecccCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998877773 344
Q ss_pred cccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEEC-C-CCCCCCeEEeCCCceeecCCCcEEEE
Q psy574 237 VDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSG-P-DPNPPPVILFGPANQTLPLRSEARLR 314 (977)
Q Consensus 237 ~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~-~-~~~~pp~i~~~p~~~~v~~g~~~~L~ 314 (977)
..+..+... | +|.|.+++..|.|.|. |...+..+.....+.+.+.+ . ...++|.|..++.++++.++..+.|.
T Consensus 367 ~~r~svs~~--g--~L~it~v~~~d~g~Yv-cq~~~~~~ss~~~a~~~qt~~~~~~rPpp~i~~g~~nQtl~v~s~a~l~ 441 (1281)
T KOG4222|consen 367 NGRGSVSPT--G--TLTITNVRQSDEGYYV-CQTQTSAGSSLTKAYLEQTDVLTDSRPPPIIEQGPANQTLPVGSTASLP 441 (1281)
T ss_pred CccceecCC--C--CcccccccccccceEe-ecccccccccccceeEEEEeeeccCCCCceeeecccccccccCcccccC
Confidence 566666653 5 9999999999999999 99999999888887777766 2 33788999999999999999999999
Q ss_pred EEEcc--CceEEEEECCEEcCCC-CcEEEecCceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEECCCCCCCcccCC
Q psy574 315 CQVRG--EGSVQWWRGEREVGSG-PRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRA 391 (977)
Q Consensus 315 C~~~~--~p~i~W~~~g~~l~~~-~~~~~~~~~sl~I~~v~~~d~G~Y~C~a~n~~G~~~~s~~l~v~~~~~~~~~~~~~ 391 (977)
|.+.+ .+.|.|.++|-.+... .+..+...++|+|.++...|.|.|+|.+.+..|+..+++.|.|.+.... ..|.+.
T Consensus 442 c~atg~P~p~i~wl~dg~~v~~~d~~~s~~~~~~l~i~dl~~~DtG~YTc~as~~~ges~wSatl~v~~~~~s-~q~~r~ 520 (1281)
T KOG4222|consen 442 CSATGAPTPNISWLKDGCNVMNPDSRISQQEIGSLRIRDLKGPDTGRYTCIASDESGESTWSATLTVEKAGSS-QQFCRC 520 (1281)
T ss_pred hhhhCCCCCCchhhhcccccccCCcccceeeeceeeeeeeecCCCcceeeeccCcccccccceeeEhhhcCcc-cccccC
Confidence 99999 7889999999876544 5666677789999999999999999999999999999999999887766 677888
Q ss_pred CCCCCCCCCCCCCeEEeeCCCceEEEEEcCCCCCCcccceEEEEEeecCCCCCCCCCCCCcccEEEeceecCcCeEEEEc
Q psy574 392 PEPSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTN 471 (977)
Q Consensus 392 ~~~~~~p~~P~~~~v~~~~~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~i~~ 471 (977)
.+++.+|++|....+.+++.+++.|+|.+....|..++.+|+|+++..+... .|.........+.+.|.+
T Consensus 521 ~D~S~~pS~p~~p~v~~v~~~~v~LsW~~~s~sg~vP~s~yiieafs~~~~e----------tw~~ta~~v~~t~~~I~g 590 (1281)
T KOG4222|consen 521 EDPSALPSPPGTPGVVNVSRTSVTLSWQPTSPSGAVPASGYIIEAFSPDLGE----------TWQTTAGRVKTTTYAIRG 590 (1281)
T ss_pred CChhhCCCCCCCCccccCCCceEEecccCCCCCCccccchhHHHHhhhhhcc----------cccccccccccceeeecC
Confidence 8899999999999999999999999999988878899999999999988776 999999899999999999
Q ss_pred cCCCCeEEEEEEEEcCCCCCCCCCCCceEEeeccccccccccCCcceeecCCCCCCCcchHHHHhhcccccCCceEEEEE
Q psy574 472 LTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTE 551 (977)
Q Consensus 472 L~p~t~Y~~~V~a~n~~G~s~~S~~s~~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~g~~~~~~~~~l~~~~~~~~~~l~ 551 (977)
|+|.+.|.|.|+|.|..|.+.+|..++.+++....+ .-.+.+...+.+++ .+..++...
T Consensus 591 L~P~~sylf~vRa~n~~Gis~Ps~~S~~vrta~a~~------------------~~a~ad~~k~~~~l---s~~l~~l~~ 649 (1281)
T KOG4222|consen 591 LKPNLSYLFLVRAENEQGISDPSTSSDPVRTAPADA------------------AAAGADHQKVQREL---SNELLRLSN 649 (1281)
T ss_pred cCccceeeeeeeccccccccCCcccCCccccCCCCh------------------hhhhhhHHHHHHhh---cccceeecc
Confidence 999999999999999999999999999988832222 11355566666666 356678888
Q ss_pred eeEeCCCeEEEEEEec---CCCccceEEEEEEecCC-CCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeec---ce
Q psy574 552 VKPMTSTSVKLTWEIL---NTDYIEGVYIYSRGLDP-PASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFG---SV 624 (977)
Q Consensus 552 ~~~~~~tsv~lsW~~p---~~~~i~~Y~v~y~~~~~-~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~---~g 624 (977)
...+++++|++.|..+ ....|.+|+|.||.... ..+|....+.. ....++.+.+|+|++.|+|++..+.. ..
T Consensus 650 ~~~L~asslr~~w~~~kq~~~~~i~g~~I~~r~~~~~~a~~s~~~v~~-~t~~s~v~~nl~p~t~ye~f~~Pf~~~~~s~ 728 (1281)
T KOG4222|consen 650 PNVLNASSLRLGWTKDKQHGSQYIQGYRISYRSLGSQLAQWSNAGVTV-PTPESVVVPNLKPGTNYEFFVRPFFPHGYSI 728 (1281)
T ss_pred ccccchhheeeeeeeecccCcccccceEEEeccCccccccccccceec-cCCcceeccccCCCccceeeccCccCCCcce
Confidence 8999999999999999 47889999999999987 56777777665 67788999999999999999999998 66
Q ss_pred eCCCCCceEEeccCCCCCCCCce---eEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecC-CcceEEEEecCCcCe
Q psy574 625 DGKPSNLRAVRTLECEPSGVPQL---TDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGN-NSALINMTVSASTPT 700 (977)
Q Consensus 625 ~g~~s~~~~~~T~~~~P~~~P~~---v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~-~~~~~~~~~~~~~~~ 700 (977)
.|.+++...+.|.+++|+.+|.+ ++.-..+.+++.|+|.+|+.+..||.+++|.|.+...+ .....+++++....+
T Consensus 729 ~g~pS~sk~alt~e~~PSapp~~~~~~s~~~~n~Ta~~Vsw~~pp~d~~ng~~qg~ki~~~~~e~tr~h~n~t~~a~~~s 808 (1281)
T KOG4222|consen 729 QGAPSNSKTALTLEEPPSAPPQGVQHVSKGSYNGTAGSVSWAPPPADVQNGILQGYKIECSGGEKTRIHINKTTNARTGS 808 (1281)
T ss_pred ecCCcccccccccccCCCCCCCCccccccccCCCceeeEEecCCcccccCCcccceeEEeecCccccccccccccCCCCc
Confidence 78899999999999999999998 45556688999999999999999999999999998866 677778888888999
Q ss_pred EEecCCCCCceEEEEEEEEcCCCcCCCCCceEEeecCCCCCCcccccccCCCCCCCCCCcccccccccc-cccccchhhh
Q psy574 701 LLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGPEPRLEDWASQSGRSRGDGTMETDLTDLTGG-AWLSAPWFIA 779 (977)
Q Consensus 701 ~~l~~L~p~t~Y~~~V~A~~~~G~g~~S~~~~~~t~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~i~ 779 (977)
++|.+|.+|..|.|+|.|+|.+|.|+.+++..+.++..... ... +. +......+.. +..++++|++
T Consensus 809 v~i~~l~~g~ay~vtv~a~T~aGvG~~s~p~~~~~~~~se~----~~~-------~~--~~ns~~~~~s~~v~~qp~f~a 875 (1281)
T KOG4222|consen 809 VTIGNLVTGIAYSVTVAARTGAGVGVKSPPQPIVFDTHSEV----LTA-------ES--DRNSETEQISVDVVNQPAFIA 875 (1281)
T ss_pred eEeccccccceEEEEEeeecCCccCCCCCCeeeecCCCcCC----ccc-------cc--ccchhhhhheeeeecCcchhe
Confidence 99999999999999999999999999999998877654410 000 00 0111223333 7788999999
Q ss_pred HHHHHHHHHHHHhe-eeEEEEeec
Q psy574 780 LLTSMVAVMALLFL-AMFFVRRRT 802 (977)
Q Consensus 780 ~v~~~~~lll~i~~-~~~~~~rr~ 802 (977)
++++.+++|++++. +|+|++|++
T Consensus 876 ~v~~a~~ii~~v~s~~~~y~~rk~ 899 (1281)
T KOG4222|consen 876 GVHRACLIIVMVFSIIWLYWRRKE 899 (1281)
T ss_pred eeeeeeeeeeeeeeeeeeeecccc
Confidence 99998888888887 666766663
No 2
>KOG3513|consensus
Probab=100.00 E-value=3.7e-81 Score=719.86 Aligned_cols=648 Identities=25% Similarity=0.410 Sum_probs=567.7
Q ss_pred cccceec-ccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEec-CcEEEEcCCCCCCCeEEEEEEEe
Q psy574 5 REEFRVQ-PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD-GTNLAIQDSRKTDDGRYQCVVKN 82 (977)
Q Consensus 5 ~~~~~~~-p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~-~g~L~I~~v~~~D~G~Y~C~a~n 82 (977)
.|.|.+. |.......|+.+.|+|.+ -|+|.|+|.|.|.|... . ..|.+... +..|.|.+++.+|+|.|+|.|.|
T Consensus 240 ~P~i~~~~p~~~~a~~G~~v~LECfA-~G~P~P~i~W~k~~g~~-~--~~r~~~~~~~~vL~I~nv~~~D~G~Y~C~AeN 315 (1051)
T KOG3513|consen 240 APKILVPFPETETALKGQSVKLECFA-LGNPTPQIKWRKVDGKP-P--PRRATYSNYGKVLKIPNVQYEDAGEYECIAEN 315 (1051)
T ss_pred CCccccCCCCcccccCCCeEEEEEEe-cCCCCCcEEEEeCCCCC-C--CcceeeeccccEEEecccCcCCCeEEEEEEec
Confidence 3555553 446889999999999999 99999999999977743 1 23444443 56799999999999999999999
Q ss_pred cCceeeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCce---EEeccceEEEccCc
Q psy574 83 VAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRM---SVLPSRSLQLSDVR 159 (977)
Q Consensus 83 ~~g~~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~---~~~~~~~L~I~~v~ 159 (977)
..| .....+.|+|+.+|.++..+++..+..|+++.|.|.+.|.|.|.|+|+||+.++..... ....++.|.|++|+
T Consensus 316 ~~G-~~~~~~~v~v~a~P~w~~~~~d~~~~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~~~~r~~~~~i~~g~L~is~v~ 394 (1051)
T KOG3513|consen 316 SRG-SATHSGHVTVYAPPYWLQKPQDTEADTGSNVTLECKASGKPNPTVKWLKNGEPLEPAERDPRYKIDDGTLIISNVQ 394 (1051)
T ss_pred ccc-cceeeEEEEEecCchhhcccceeEecCCCCeEEEEEecCCCCCceEEeeCCeecCccCCCcceEEeCCEEEEEecc
Confidence 999 56788999999999999999999999999999999999999999999999999864222 33478999999999
Q ss_pred cCCCeEEEEEEEeCCeeEEEEEEEEEeeC-CeEEecCCCc--EEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCc
Q psy574 160 LEDAGEYVCEAENAVGKISASATLTVQMA-PIVRERPSDL--RLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDR 236 (977)
Q Consensus 160 ~~D~G~Y~C~a~n~~g~~~~~~~L~V~~~-p~~~~~p~~~--~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~ 236 (977)
..|+|.|+|.|+|..|.+.+++.|.|.+. |.|...|.+. .+..|..+.|.|...+.|.+.+.|.|.+..+ ..
T Consensus 395 ~~dsg~YQC~A~Nk~G~i~anA~L~V~a~~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p~~~W~k~~~~~-----~~ 469 (1051)
T KOG3513|consen 395 ESDSGVYQCIAENKYGTIYANAELKVLASAPVFPLNPVERKVMAVVGGTVTIDCKPFASPKPKVSWLKGGEKL-----LQ 469 (1051)
T ss_pred cccCeEEEeeeecccceEeeeeEEEEEccCCCCCCCccceEEEEEeCCeEEEeeccCCCCcceEEEEcCCccc-----cc
Confidence 99999999999999999999999999965 8888887776 7789999999999999999999999998833 26
Q ss_pred cccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEECCCCCCCCeEEeCCCceeecCCCcEEEEEE
Q psy574 237 VDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQ 316 (977)
Q Consensus 237 ~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~~~~~~pp~i~~~p~~~~v~~g~~~~L~C~ 316 (977)
.+|+.+.. +| +|.|.+++.+|+|.|+ |.|.|..|.....+.|.|++ ++.|+..|.+..+..|+.+.|.|+
T Consensus 470 ~~r~~i~e--dG--tL~I~n~t~~DaG~Yt-C~A~N~~G~a~~~~~L~Vkd-----~tri~~~P~~~~v~~g~~v~l~Ce 539 (1051)
T KOG3513|consen 470 SGRIRILE--DG--TLEISNVTRSDAGKYT-CVAENKLGKAESTGNLIVKD-----ATRITLAPSNTDVKVGESVTLTCE 539 (1051)
T ss_pred CceEEECC--CC--cEEecccCcccCcEEE-EEEEcccCccceEEEEEEec-----CceEEeccchhhhccCceEEEEee
Confidence 78888876 47 9999999999999999 99999999999999999999 889999999999999999999999
Q ss_pred Ecc----CceEEEEECCEEcCCC---CcEEEecC---ceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEECCCCCCC
Q psy574 317 VRG----EGSVQWWRGEREVGSG---PRVNVTGD---GSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNI 386 (977)
Q Consensus 317 ~~~----~p~i~W~~~g~~l~~~---~~~~~~~~---~sl~I~~v~~~d~G~Y~C~a~n~~G~~~~s~~l~v~~~~~~~~ 386 (977)
+.. ...|.|.+||..+... ..+.+... +.|+|.+++..|+|.|.|.|.....+.+..+.+.|.
T Consensus 540 ~shD~~ld~~f~W~~nG~~id~~~~~~~~~~~~~~~~g~L~i~nv~l~~~G~Y~C~aqT~~Ds~s~~A~l~V~------- 612 (1051)
T KOG3513|consen 540 ASHDPSLDITFTWKKNGRPIDFNPDGDHFEINDGSDSGRLTIANVSLEDSGKYTCVAQTALDSASARADLLVR------- 612 (1051)
T ss_pred cccCCCcceEEEEEECCEEhhccCCCCceEEeCCcCccceEEEeeccccCceEEEEEEEeecchhcccceEEe-------
Confidence 997 5679999999977433 33433322 359999999999999999999988888889999998
Q ss_pred cccCCCCCCCCCCCCCCCeEEeeCCCceEEEEEcCCCCCCcccceEEEEEeecCCCCCCCCCCCCcccEEEeceecCc--
Q psy574 387 GFFRAPEPSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPS-- 464 (977)
Q Consensus 387 ~~~~~~~~~~~p~~P~~~~v~~~~~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~-- 464 (977)
.+|+||..+.+..++++++.|+|.+..+ ++++|..|.|+++..... .|..+......
T Consensus 613 ---------gpPgpP~~v~~~~i~~t~~~lsW~~g~d-n~SpI~~Y~iq~rt~~~~-----------~W~~v~~vp~~~~ 671 (1051)
T KOG3513|consen 613 ---------GPPGPPPDVHVDDISDTTARLSWSPGSD-NNSPIEKYTIQFRTPFPG-----------KWKAVTTVPGNIT 671 (1051)
T ss_pred ---------cCCCCCCceeEeeeccceEEEEeecCCC-CCCCceEEeEEecCCCCC-----------cceEeeECCCccc
Confidence 4588899999999999999999999988 678899999999877433 89887732221
Q ss_pred --CeEEEEccCCCCeEEEEEEEEcCCCCCCCCCCCceEEeeccccccccccCCcceeecCCCCCCCcchHHHHhhccccc
Q psy574 465 --PILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEG 542 (977)
Q Consensus 465 --~~~~i~~L~p~t~Y~~~V~a~n~~G~s~~S~~s~~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~g~~~~~~~~~l~~~ 542 (977)
.+.++-+|.|+..|+|||.|+|..|.|+||.+|+.+++.+..|...|
T Consensus 672 ~~~sa~vv~L~Pwv~YeFRV~AvN~iG~gePS~pS~~~rT~ea~P~~~P------------------------------- 720 (1051)
T KOG3513|consen 672 GDESATVVNLSPWVEYEFRVVAVNSIGIGEPSPPSEKVRTPEAAPSVNP------------------------------- 720 (1051)
T ss_pred CccceeEEccCCCcceEEEEEEEcccccCCCCCCccceecCCCCCccCC-------------------------------
Confidence 24679999999999999999999999999999999999777774444
Q ss_pred CCceEEEEEeeEeCCCeEEEEEEec----CCCccceEEEEEEecCCCCCceEEEEeecCccceEEECC--CCCCcEEEEE
Q psy574 543 GGSLIELTEVKPMTSTSVKLTWEIL----NTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTG--LAHYSRYEFF 616 (977)
Q Consensus 543 ~~~~~~~l~~~~~~~tsv~lsW~~p----~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~--L~p~t~Y~~~ 616 (977)
.+++......+.+.|+|++. .++.-.+|+|.||..+....|....+.. .++..+.+.+ ..|++.|+++
T Consensus 721 -----~nv~g~g~~~~eLvItW~Pl~~~~qNG~gfgY~Vswr~~g~~~~W~~~~v~~-~d~~~~V~~~~st~~~tpyevK 794 (1051)
T KOG3513|consen 721 -----SNVKGGGGSPTELVITWEPLPEEEQNGPGFGYRVSWRPQGADKEWKEVIVSN-QDQPRYVVSNESTEPFTPYEVK 794 (1051)
T ss_pred -----ccccccCCCCceEEEEeccCCHHHccCCCceEEEEEEeCCCCcccceeEecc-cCCceEEEcCCCCCCcceeEEE
Confidence 47888888999999999997 7788899999999999877999887765 4566777776 6789999999
Q ss_pred EEEeecceeCCCCCceEEeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecC--CcceEEEEe
Q psy574 617 LVPFFGSVDGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGN--NSALINMTV 694 (977)
Q Consensus 617 V~a~n~~g~g~~s~~~~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~--~~~~~~~~~ 694 (977)
|+|+|+.|.|+.|..+.+++.|+.|..+|..+.+...+++.+.|+|++| ...||.+++|+|+|+..+ .+......+
T Consensus 795 Vqa~N~~GeGp~s~~~v~~S~Ed~P~~ap~~~~~~~~s~s~~~v~W~~~--~~~nG~l~gY~v~Y~~~~~~~~~~~~~~i 872 (1051)
T KOG3513|consen 795 VQAINDQGEGPESQVTVGYSGEDEPPVAPTKLSAKPLSSSEVNLSWKPP--LWDNGKLTGYEVKYWKINEKEGSLSRVQI 872 (1051)
T ss_pred EEEecCCCCCCCCceEEEEcCCCCCCCCCccceeecccCceEEEEecCc--CccCCccceeEEEEEEcCCCcccccceee
Confidence 9999999999999999999999999999999999999999999999999 667799999999999976 355566777
Q ss_pred cCCcCeEEecCCCCCceEEEEEEEEcCCCcCCCCCceEEeecCCC
Q psy574 695 SASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGP 739 (977)
Q Consensus 695 ~~~~~~~~l~~L~p~t~Y~~~V~A~~~~G~g~~S~~~~~~t~~~~ 739 (977)
.++.++..|+||+++|.|.|.|+|+|.+|.|+.|..+..+|....
T Consensus 873 ~~~~~~~~ltgL~~~T~Y~~~vrA~nsaG~Gp~s~~~~~tt~k~p 917 (1051)
T KOG3513|consen 873 AGNRTSWRLTGLEPNTKYRFYVRAYTSAGGGPASSEENVTTKKAP 917 (1051)
T ss_pred cCCcceEeeeCCCCCceEEEEEEEecCCCCCCCccceeccccCCC
Confidence 799999999999999999999999999999999999998777766
No 3
>KOG4221|consensus
Probab=100.00 E-value=1.5e-72 Score=641.01 Aligned_cols=654 Identities=26% Similarity=0.396 Sum_probs=559.0
Q ss_pred ccccceecccceEEeCCCcEEEEEECC-CCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCC-----CCCeEEE
Q psy574 4 LREEFRVQPKSQRVAAGDTALLECGPP-RGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRK-----TDDGRYQ 77 (977)
Q Consensus 4 l~~~~~~~p~~~~v~~G~~v~L~C~~~-~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~-----~D~G~Y~ 77 (977)
..-.|.++|.+. .+|..+.|+|.+. .+.+.+.|+|+|||..+....+.|.....||+|.|.++.. -|+|.|+
T Consensus 40 ~~~~f~~ep~d~--~~~~svlLecs~~~~~~~~~~i~wkkDg~~l~e~~d~~~~~LsNgSl~i~~v~~~kh~~~~eg~Yq 117 (1381)
T KOG4221|consen 40 TPLQFLLEPSDA--MEGSSVLLECSAYAAGGTSVKIEWKKDGSQLNEVYDDRRQLLSNGSLYISSVLASKHNKVDEGVYQ 117 (1381)
T ss_pred CcceEEeccccc--ccccceEEeccccccCCCCeeEEEccCchhhhhhhhhHHhhccCCceeEeeecccccccccCceEE
Confidence 445788899866 8999999999872 2225789999999999977767788888899999999987 7899999
Q ss_pred EEEEec-CceeeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCC-CceEEeccceEEE
Q psy574 78 CVVKNV-AGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPE-DRMSVLPSRSLQL 155 (977)
Q Consensus 78 C~a~n~-~g~~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~-~~~~~~~~~~L~I 155 (977)
|.|+-. .|..-++.+.|.+...+.|...+.+.++..|+++.|.|.+.+.|.+.+.|.|+..+++. +++....++.|.|
T Consensus 118 c~atv~~~gsi~Sr~a~v~~a~~~~f~~~~~~~t~~~g~ta~f~c~vn~e~~p~i~w~kn~~pl~~~~r~i~lpsG~L~I 197 (1381)
T KOG4221|consen 118 CLATVEDVGSILSRTAKVALAGLADFALQPESTTLLYGQTALFSCEVNAEPVPTIMWLKNDQPLPLDSRVIVLPSGALEI 197 (1381)
T ss_pred EEEEccccceeecceEEEEecccCccccCccceeEecCCcEEEEEEEcCccCceeEEecccccccCCCcEEEcCCCcEEe
Confidence 999877 57778999999999999999999999999999999999999999999999999998764 4666678999999
Q ss_pred ccCccCCCeEEEEEEEeCCee-EEEEEEEEEeeCC------eEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCee
Q psy574 156 SDVRLEDAGEYVCEAENAVGK-ISASATLTVQMAP------IVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNR 228 (977)
Q Consensus 156 ~~v~~~D~G~Y~C~a~n~~g~-~~~~~~L~V~~~p------~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~ 228 (977)
.+++..|.|.|+|.+++.... .+..+.|+|..-| .|...|....+.+|+++.|.|.+.+.|.|.|.|.+||..
T Consensus 198 ~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvvs~~p~p~v~Wlrng~~ 277 (1381)
T KOG4221|consen 198 SGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVVSGVPKPSVKWLRNGEK 277 (1381)
T ss_pred cccccCCCceEEEEEecCCcCCccceeEEEecCCcccccceeeecCCCccccccCCcEEEEEEecCCCCCceEEeeCCee
Confidence 999999999999999986543 4667888888333 367789999999999999999999999999999999988
Q ss_pred eeecCCCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEECCCCCCCCeEEeCCCceeecCC
Q psy574 229 SLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLR 308 (977)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~~~~~~pp~i~~~p~~~~v~~g 308 (977)
+... ..++... |.+.|.|.+++..|+|.|+ |+|.|......+.+.|+|.. +|.|+..|.+.....+
T Consensus 278 i~~d----s~rivl~----g~~slliS~a~~~dSg~Yt-C~Atn~~D~idasaev~V~a-----~P~~~~~p~~l~A~e~ 343 (1381)
T KOG4221|consen 278 ISVD----SYRIVLV----GGSSLLISNATDDDSGKYT-CRATNTNDSIDASAEVTVLA-----PPGFTKAPTTLVAHES 343 (1381)
T ss_pred eeec----ceEEEEe----cccceEEeccccccCceEE-EEecCCCcccccceEEEEEc-----CCCCCCCCcceeeeec
Confidence 7532 1333333 4459999999999999999 99999988999999999998 7999999999999999
Q ss_pred CcEEEEEEEcc--CceEEEEECCEEcCCCCcEEEecCceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEECCCCCCC
Q psy574 309 SEARLRCQVRG--EGSVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNI 386 (977)
Q Consensus 309 ~~~~L~C~~~~--~p~i~W~~~g~~l~~~~~~~~~~~~sl~I~~v~~~d~G~Y~C~a~n~~G~~~~s~~l~v~~~~~~~~ 386 (977)
.++.|.|.+.+ .|.+.|+|||..+...+.+.+...+.|.|..+-..|.|.|+|.+.|..|.....+.+.+...+.
T Consensus 344 ~die~ec~~~g~p~p~v~w~kNgd~~ipsdy~ki~~~~~lrIlgi~~sdeg~yQcvaen~~G~a~a~a~l~vv~~p~--- 420 (1381)
T KOG4221|consen 344 MDIEFECPVSGKPIPTVRWYKNGDRIIPSDYFKIVGGGNLRILGIVKSDEGFYQCVAENDAGSAQAAAQLEVVPQPA--- 420 (1381)
T ss_pred cceeEeCCCCCCCcceEEEEecCcccCcccceEecCCCCcEEEEEecccchhhhhhhccCcccccchhhheeccCCc---
Confidence 99999999999 7789999999999888888888888899999999999999999999999999999886653321
Q ss_pred cccCCCCCCCCCCCCCCCeEEeeCCCceEEEEEcCCCCCCcccceEEEEEeecCCCCCCCCCCCCcccEEEec-eecCcC
Q psy574 387 GFFRAPEPSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVA-TNVPSP 465 (977)
Q Consensus 387 ~~~~~~~~~~~p~~P~~~~v~~~~~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~-~~~~~~ 465 (977)
.+.....|++|..+.+...+...+.++|.+|. ..++.+..|.+.|..... .|.... ......
T Consensus 421 ----~~~s~~~~sap~~lv~~~~~srfi~~tw~~p~-~~~g~i~~~~v~~~~~~~------------~rer~~~tss~g~ 483 (1381)
T KOG4221|consen 421 ----SASSDLLPSAPRDLVANLVSSRFIQLTWRPPA-QISGNISTYTVFYKVEGD------------VRERLQNTSSPGI 483 (1381)
T ss_pred ----ccccCccccCCcceecccccceeEEEeecCcc-ccCCCcceEEEEEecCCc------------hhhhheeccCCce
Confidence 22234678899999888888899999999888 478889999998876543 333322 233336
Q ss_pred eEEEEccCCCCeEEEEEEEEcCCCCCCCCCCCceEEeeccccccccccCCcceeecCCCCCCCcchHHHHhhcccccCCc
Q psy574 466 ILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGS 545 (977)
Q Consensus 466 ~~~i~~L~p~t~Y~~~V~a~n~~G~s~~S~~s~~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~g~~~~~~~~~l~~~~~~ 545 (977)
..++.+|.|.+.|.|+|+|.|.+|.+..|... .+.+ .+ ..
T Consensus 484 ~~tv~nl~p~t~Y~~rv~A~n~~g~g~sS~pL-kV~t---~p------------------------------------Eg 523 (1381)
T KOG4221|consen 484 QVTVQNLSPLTMYFFRVRAKNEAGSGESSAPL-KVTT---QP------------------------------------EG 523 (1381)
T ss_pred EEEeeecccceeEEEEEeccCcccCCccCCce-EEec---CC------------------------------------CC
Confidence 77899999999999999999999999877532 2222 11 11
Q ss_pred eEEEEEeeEeCCCeEEEEEEec--CCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeecc
Q psy574 546 LIELTEVKPMTSTSVKLTWEIL--NTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGS 623 (977)
Q Consensus 546 ~~~~l~~~~~~~tsv~lsW~~p--~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~ 623 (977)
++. +++...+..++.+.|++| ++++|++|++.|...+ ...|.... .+..+++|.+|+|+|.|.|+|+|+|..
T Consensus 524 p~~-~~a~ats~~ti~v~WepP~~~n~~I~~yk~~ys~~~-~~~~~~~~----~n~~e~ti~gL~k~TeY~~~vvA~N~~ 597 (1381)
T KOG4221|consen 524 PVQ-LQAYATSPTTILVTWEPPPFGNGPITGYKLFYSEDD-TGKELRVE----NNATEYTINGLEKYTEYSIRVVAYNSA 597 (1381)
T ss_pred Ccc-ccccccCcceEEEEecCCCCCCCCceEEEEEEEcCC-CCceEEEe----cCccEEEeecCCCccceEEEEEEecCC
Confidence 123 788899999999999999 8999999999999885 33343333 567999999999999999999999999
Q ss_pred eeCCCCCceEEeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecC-CcceEEEEecCCcCeEE
Q psy574 624 VDGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGN-NSALINMTVSASTPTLL 702 (977)
Q Consensus 624 g~g~~s~~~~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~-~~~~~~~~~~~~~~~~~ 702 (977)
|.|..|..+.+.|..+.|++||.||+++..++++|.|+|.+|+....||.|++|+|+|+... ........+.++.+.++
T Consensus 598 G~g~sS~~i~V~Tlsd~PsaPP~Nl~lev~sStsVrVsW~pP~~~t~ng~itgYkIRy~~~~~~~~~~~t~v~~n~~~~l 677 (1381)
T KOG4221|consen 598 GSGVSSADITVRTLSDVPSAPPQNLSLEVVSSTSVRVSWLPPPSETQNGQITGYKIRYRKLSREDEVNETVVKGNTTQYL 677 (1381)
T ss_pred CCCCCCCceEEEeccCCCCCCCcceEEEecCCCeEEEEccCCCcccccceEEEEEEEecccCcccccceeecccchhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999765 44444555666899999
Q ss_pred ecCCCCCceEEEEEEEEcCCCcCCCCCceEEeecCCC
Q psy574 703 LTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGP 739 (977)
Q Consensus 703 l~~L~p~t~Y~~~V~A~~~~G~g~~S~~~~~~t~~~~ 739 (977)
+.+|+|++.|.|+|.|.|..|.|++|+.+.+.|....
T Consensus 678 ~~~Lep~T~Y~vrIsa~t~nGtGpaS~w~~aeT~~~d 714 (1381)
T KOG4221|consen 678 FNGLEPNTQYRVRISAMTVNGTGPASEWVSAETPESD 714 (1381)
T ss_pred hhcCCCCceEEEEEEEeccCCCCCcccceeccCcccc
Confidence 9999999999999999999999999999999998765
No 4
>KOG4221|consensus
Probab=100.00 E-value=1.3e-68 Score=608.79 Aligned_cols=650 Identities=25% Similarity=0.388 Sum_probs=533.5
Q ss_pred ccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecCc
Q psy574 6 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAG 85 (977)
Q Consensus 6 ~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g 85 (977)
++|..++.++++..|+++.|.|.+ .+.|.+.+.|.||.+++..+. |+....+|.|.|.+++++|.|.|+|.+++...
T Consensus 141 ~~f~~~~~~~t~~~g~ta~f~c~v-n~e~~p~i~w~kn~~pl~~~~--r~i~lpsG~L~I~~~qp~d~g~yrc~vt~g~~ 217 (1381)
T KOG4221|consen 141 ADFALQPESTTLLYGQTALFSCEV-NAEPVPTIMWLKNDQPLPLDS--RVIVLPSGALEISGLQPSDTGEYRCVVTGGAS 217 (1381)
T ss_pred CccccCccceeEecCCcEEEEEEE-cCccCceeEEecccccccCCC--cEEEcCCCcEEecccccCCCceEEEEEecCCc
Confidence 678899999999999999999999 788889999999999885433 88888899999999999999999999999988
Q ss_pred eeeeEeEEEEEEcCC------eEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCC--ceEEeccceEEEcc
Q psy574 86 TRESTDAVLRVLVKP------YIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED--RMSVLPSRSLQLSD 157 (977)
Q Consensus 86 ~~~s~~~~l~V~~~P------~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~--~~~~~~~~~L~I~~ 157 (977)
.+.+..+.|+|...| .|+..|.+..+.+|+++.|.|.+.|.|.|+|.|.||+..|..+ ++.....+.|.|++
T Consensus 218 ~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~~ds~rivl~g~~slliS~ 297 (1381)
T KOG4221|consen 218 QRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVVSGVPKPSVKWLRNGEKISVDSYRIVLVGGSSLLISN 297 (1381)
T ss_pred CCccceeEEEecCCcccccceeeecCCCccccccCCcEEEEEEecCCCCCceEEeeCCeeeeecceEEEEecccceEEec
Confidence 888999999998443 4678899999999999999999999999999999999998766 44445678999999
Q ss_pred CccCCCeEEEEEEEeCCeeEEEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCcc
Q psy574 158 VRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRV 237 (977)
Q Consensus 158 v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~ 237 (977)
++.+|+|.|+|+|.|....+.+.+.|+|..+|.|...|.+..+.++.++.|.|.+.|.|.+.+.|+|+|..+. ..
T Consensus 298 a~~~dSg~YtC~Atn~~D~idasaev~V~a~P~~~~~p~~l~A~e~~die~ec~~~g~p~p~v~w~kNgd~~i-----ps 372 (1381)
T KOG4221|consen 298 ATDDDSGKYTCRATNTNDSIDASAEVTVLAPPGFTKAPTTLVAHESMDIEFECPVSGKPIPTVRWYKNGDRII-----PS 372 (1381)
T ss_pred cccccCceEEEEecCCCcccccceEEEEEcCCCCCCCCcceeeeeccceeEeCCCCCCCcceEEEEecCcccC-----cc
Confidence 9999999999999998888999999999999999999999999999999999999999999999999998774 34
Q ss_pred ccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEECC-CCCCCCeEEeCCCceeecCCCcEEEEEE
Q psy574 238 DNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGP-DPNPPPVILFGPANQTLPLRSEARLRCQ 316 (977)
Q Consensus 238 ~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~~-~~~~pp~i~~~p~~~~v~~g~~~~L~C~ 316 (977)
+.+++.. ++ .|+|..+-..|.|.|+ |.+.|..|.....+.+.|... .......+...|..+.+..-+.-.+.|+
T Consensus 373 dy~ki~~--~~--~lrIlgi~~sdeg~yQ-cvaen~~G~a~a~a~l~vv~~p~~~~s~~~~sap~~lv~~~~~srfi~~t 447 (1381)
T KOG4221|consen 373 DYFKIVG--GG--NLRILGIVKSDEGFYQ-CVAENDAGSAQAAAQLEVVPQPASASSDLLPSAPRDLVANLVSSRFIQLT 447 (1381)
T ss_pred cceEecC--CC--CcEEEEEecccchhhh-hhhccCcccccchhhheeccCCcccccCccccCCcceecccccceeEEEe
Confidence 5555554 23 4999999999999999 999999999998888855442 1111222333344444433333334444
Q ss_pred Ec------c-CceEEEEECCEEcCCCCcEEEecCc-eEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEECCCCCCCcc
Q psy574 317 VR------G-EGSVQWWRGEREVGSGPRVNVTGDG-SLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGF 388 (977)
Q Consensus 317 ~~------~-~p~i~W~~~g~~l~~~~~~~~~~~~-sl~I~~v~~~d~G~Y~C~a~n~~G~~~~s~~l~v~~~~~~~~~~ 388 (977)
.. + .+.++|++..........+.....| .+++.++++...+.++|.|.|..|....+..|.|..+
T Consensus 448 w~~p~~~~g~i~~~~v~~~~~~~~rer~~~tss~g~~~tv~nl~p~t~Y~~rv~A~n~~g~g~sS~pLkV~t~------- 520 (1381)
T KOG4221|consen 448 WRPPAQISGNISTYTVFYKVEGDVRERLQNTSSPGIQVTVQNLSPLTMYFFRVRAKNEAGSGESSAPLKVTTQ------- 520 (1381)
T ss_pred ecCccccCCCcceEEEEEecCCchhhhheeccCCceEEEeeecccceeEEEEEeccCcccCCccCCceEEecC-------
Confidence 33 3 4567886643322222222223333 3667788888888889999999999999999999854
Q ss_pred cCCCCCCCCCCCCCCCeEEeeCCCceEEEEEcCCCCCCcccceEEEEEeecCCCCCCCCCCCCcccEEEeceecCcCeEE
Q psy574 389 FRAPEPSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILT 468 (977)
Q Consensus 389 ~~~~~~~~~p~~P~~~~v~~~~~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 468 (977)
|.+|..+.....+..++.+.|.+|.. +++++++|++.|...+.+ .|..+ ..+..+++
T Consensus 521 ---------pEgp~~~~a~ats~~ti~v~WepP~~-~n~~I~~yk~~ys~~~~~-----------~~~~~--~~n~~e~t 577 (1381)
T KOG4221|consen 521 ---------PEGPVQLQAYATSPTTILVTWEPPPF-GNGPITGYKLFYSEDDTG-----------KELRV--ENNATEYT 577 (1381)
T ss_pred ---------CCCCccccccccCcceEEEEecCCCC-CCCCceEEEEEEEcCCCC-----------ceEEE--ecCccEEE
Confidence 33444578888888999999999987 899999999999766333 66665 45678999
Q ss_pred EEccCCCCeEEEEEEEEcCCCCCCCCCCCceEEeeccccccccccCCcceeecCCCCCCCcchHHHHhhcccccCCceEE
Q psy574 469 VTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIE 548 (977)
Q Consensus 469 i~~L~p~t~Y~~~V~a~n~~G~s~~S~~s~~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~g~~~~~~~~~l~~~~~~~~~ 548 (977)
|.+|.++|.|.|+|.|.|..|.|..|....+.+. .+.| + +| +.
T Consensus 578 i~gL~k~TeY~~~vvA~N~~G~g~sS~~i~V~Tl-sd~P----s---------aP-----------------------P~ 620 (1381)
T KOG4221|consen 578 INGLEKYTEYSIRVVAYNSAGSGVSSADITVRTL-SDVP----S---------AP-----------------------PQ 620 (1381)
T ss_pred eecCCCccceEEEEEEecCCCCCCCCCceEEEec-cCCC----C---------CC-----------------------Cc
Confidence 9999999999999999999999988876555555 3333 2 22 35
Q ss_pred EEEeeEeCCCeEEEEEEec----CCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeecce
Q psy574 549 LTEVKPMTSTSVKLTWEIL----NTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSV 624 (977)
Q Consensus 549 ~l~~~~~~~tsv~lsW~~p----~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g 624 (977)
|+++...++++|+|+|.+| .++.+.+|+|+|+......+.....+. .+..++.+.+|+|+|.|.|+|.|++..|
T Consensus 621 Nl~lev~sStsVrVsW~pP~~~t~ng~itgYkIRy~~~~~~~~~~~t~v~--~n~~~~l~~~Lep~T~Y~vrIsa~t~nG 698 (1381)
T KOG4221|consen 621 NLSLEVVSSTSVRVSWLPPPSETQNGQITGYKIRYRKLSREDEVNETVVK--GNTTQYLFNGLEPNTQYRVRISAMTVNG 698 (1381)
T ss_pred ceEEEecCCCeEEEEccCCCcccccceEEEEEEEecccCcccccceeecc--cchhhhHhhcCCCCceEEEEEEEeccCC
Confidence 8999999999999999999 678899999999977754443333332 4778999999999999999999999999
Q ss_pred eCCCCCceEEeccCC-----------------------------------------------------------------
Q psy574 625 DGKPSNLRAVRTLEC----------------------------------------------------------------- 639 (977)
Q Consensus 625 ~g~~s~~~~~~T~~~----------------------------------------------------------------- 639 (977)
.|++|+++.+.|.+.
T Consensus 699 tGpaS~w~~aeT~~~d~~e~vp~~ps~l~~~~g~~si~vsW~Pp~~~~~~vrgY~ig~r~g~~~p~~~tIrl~~~~s~y~ 778 (1381)
T KOG4221|consen 699 TGPASEWVSAETPESDLDERVPGKPSELHVHPGSNSIVVSWTPPPHPNIVVRGYKIGYRPGSGIPDTGTIRLDEKVSYYN 778 (1381)
T ss_pred CCCcccceeccCccccccccCCCCCceeeeccCceeEEEEeCCCCChhhhhcceEEeeecccCCCCCccEEecceeeEEE
Confidence 999999999888764
Q ss_pred --------------------------------------------------------------------------------
Q psy574 640 -------------------------------------------------------------------------------- 639 (977)
Q Consensus 640 -------------------------------------------------------------------------------- 639 (977)
T Consensus 779 l~~Le~~~~YvVkL~AfNn~gdG~p~y~~~~tR~~~~~~~~v~tp~~ppvgv~A~~~S~tsI~v~w~~~~~~t~~~~~yT 858 (1381)
T KOG4221|consen 779 LEQLEPNRDYVVKLRAFNNHGDGNPIYESVKTRSATDPTSPVDTPMLPPVGVRANALSSTSIRVTWADNKDQTTDNRIYT 858 (1381)
T ss_pred EEecccCceEEEEEEEeccCCCCcceeeeeeeccCCCcCCcCCCCCCCcccccccccccceEEEEEecCCCccccceEEE
Confidence
Q ss_pred --------------------------------------------------------------CCCCCCceeEEEEec-Cc
Q psy574 640 --------------------------------------------------------------EPSGVPQLTDPVLLN-AT 656 (977)
Q Consensus 640 --------------------------------------------------------------~P~~~P~~v~~~~~~-~~ 656 (977)
+|..||.++.+.... .+
T Consensus 859 Vr~~~~gi~~~~~~~~~~~t~ls~~v~glkpnt~yEfav~~~~~~~r~stwsmsv~~~tle~~P~sPP~d~tv~p~e~P~ 938 (1381)
T KOG4221|consen 859 VRWSLTGIRNGTLYRYDNSTDLSYLVGGLKPNTPYEFAVMVVKRNRRESTWSMSVENRTLELVPSSPPRDLTVQPDEKPT 938 (1381)
T ss_pred EEEeecccccceeEEEecccccceeccCcCcCChhhhhhhhhhccCcCCcccceeeeeecccCCCCCChhceecccCCCC
Confidence 455778888877544 68
Q ss_pred EEEEEeeCCCCCCCCeeeeEEEEEEEecC---CcceEEEEecCCcCeEEecCCCCCceEEEEEEEEcCCCcCCCCCceEE
Q psy574 657 SVLLKWKPPPVGTHNGVIRTYQIIVGGGN---NSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALL 733 (977)
Q Consensus 657 sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~---~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~~G~g~~S~~~~~ 733 (977)
++.|+|.|| ...||.|++|.|+|.... ...+...++.++..+..+.+|.+++.|.|+|+|+|.+|.|++|+++.+
T Consensus 939 ~v~v~WqPp--~e~nG~I~~Yii~Ys~~~n~~~~dWt~~t~~g~~L~~~v~~l~p~t~yffkiQAr~~kG~gp~s~~v~y 1016 (1381)
T KOG4221|consen 939 TVIVHWQPP--TEPNGEITEYIIYYSTDGNTPEHDWTIETTAGAELSHQVPNLDPDTGYFFKIQARNEKGPGPFSSPVLY 1016 (1381)
T ss_pred ccccccCCC--cCCCCceeeEEEEEecCCCCchhhceeeecccchhhhccCCCCCCCceEEEEEeeccCCCCccccceee
Confidence 999999999 999999999999998854 556677778889999999999999999999999999999999999999
Q ss_pred eecCCC
Q psy574 734 SLTSGP 739 (977)
Q Consensus 734 ~t~~~~ 739 (977)
+|....
T Consensus 1017 ~t~~~~ 1022 (1381)
T KOG4221|consen 1017 ETSKAE 1022 (1381)
T ss_pred eccccc
Confidence 988765
No 5
>KOG3513|consensus
Probab=100.00 E-value=2.2e-64 Score=581.24 Aligned_cols=639 Identities=24% Similarity=0.368 Sum_probs=508.9
Q ss_pred cce-ecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEe-ecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecC
Q psy574 7 EFR-VQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPI-DFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVA 84 (977)
Q Consensus 7 ~~~-~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l-~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~ 84 (977)
.|. .....+.+.+|+.+.|.|.+|.+.|.+.++|..++-.- ...+..|+.+..+|+|.|.++..+|.+.|.|.|.+..
T Consensus 137 ~F~~e~~~~v~v~eG~~~~L~C~pP~~~P~l~~~W~~~~~~~~~~~~~~r~~~~~~G~Lyfs~V~~~D~~~Y~C~a~~~~ 216 (1051)
T KOG3513|consen 137 KFKKEERSPVEVEEGDGVVLPCNPPAHFPPLRYYWMLNEFPHFVQIDNRRVFSQENGNLYFSNVETSDFGNYICSATFPS 216 (1051)
T ss_pred cCccccCCcEEEEeCCceEEeCCCCCCCCCccEEehhccCCcccccCcceeEecccceEEEeecchhhcCceEEEEEchh
Confidence 344 34556899999999999999999999999999876443 2344578999999999999999999999999999843
Q ss_pred c--eeeeEeEEEEEE-------cCCeEEeC-CCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceEEe-ccceE
Q psy574 85 G--TRESTDAVLRVL-------VKPYIIRG-PKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVL-PSRSL 153 (977)
Q Consensus 85 g--~~~s~~~~l~V~-------~~P~~~~~-p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~-~~~~L 153 (977)
- ......+.|++. .+|.+... |.+.....|+.+.|.|.+.|.|.|+|.|+|.++.....+.... ...+|
T Consensus 217 ~~~~v~~~~~~L~~~~~~~~~~~~P~i~~~~p~~~~a~~G~~v~LECfA~G~P~P~i~W~k~~g~~~~~r~~~~~~~~vL 296 (1051)
T KOG3513|consen 217 TQTIVQGPPFPLIVRSNNVMREYAPKILVPFPETETALKGQSVKLECFALGNPTPQIKWRKVDGKPPPRRATYSNYGKVL 296 (1051)
T ss_pred hcccccCCceeEEEcccccccccCCccccCCCCcccccCCCeEEEEEEecCCCCCcEEEEeCCCCCCCcceeeeccccEE
Confidence 2 122445566663 34655554 5577888999999999999999999999999886555554443 66899
Q ss_pred EEccCccCCCeEEEEEEEeCCeeEEEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecC
Q psy574 154 QLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYP 233 (977)
Q Consensus 154 ~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~ 233 (977)
.|.+++.+|+|.|+|.|+|..|.....+.|+|..+|.+...+.+..+..|++++|.|.+.|.|.|+|.|++||.++..
T Consensus 297 ~I~nv~~~D~G~Y~C~AeN~~G~~~~~~~v~v~a~P~w~~~~~d~~~~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~~-- 374 (1051)
T KOG3513|consen 297 KIPNVQYEDAGEYECIAENSRGSATHSGHVTVYAPPYWLQKPQDTEADTGSNVTLECKASGKPNPTVKWLKNGEPLEP-- 374 (1051)
T ss_pred EecccCcCCCeEEEEEEecccccceeeEEEEEecCchhhcccceeEecCCCCeEEEEEecCCCCCceEEeeCCeecCc--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998852
Q ss_pred CCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEECCCCCCCCeEEeCCCce--eecCCCcE
Q psy574 234 GDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQ--TLPLRSEA 311 (977)
Q Consensus 234 ~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~~~~~~pp~i~~~p~~~--~v~~g~~~ 311 (977)
.....++.+.. | +|.|++++..|+|.|+ |.|.|..|...+++.|.|... .|.+...|... .+..|..+
T Consensus 375 ~~r~~~~~i~~---g--~L~is~v~~~dsg~YQ-C~A~Nk~G~i~anA~L~V~a~----~P~f~~~p~~~~~~a~~g~~v 444 (1051)
T KOG3513|consen 375 AERDPRYKIDD---G--TLIISNVQESDSGVYQ-CIAENKYGTIYANAELKVLAS----APVFPLNPVERKVMAVVGGTV 444 (1051)
T ss_pred cCCCcceEEeC---C--EEEEEecccccCeEEE-eeeecccceEeeeeEEEEEcc----CCCCCCCccceEEEEEeCCeE
Confidence 22333466664 5 9999999999999999 999999999999999999985 57777777766 47889999
Q ss_pred EEEEEEcc--CceEEEEECCEEcCCCCcEEEecCceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEECCCCCCCccc
Q psy574 312 RLRCQVRG--EGSVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFF 389 (977)
Q Consensus 312 ~L~C~~~~--~p~i~W~~~g~~l~~~~~~~~~~~~sl~I~~v~~~d~G~Y~C~a~n~~G~~~~s~~l~v~~~~~~~~~~~ 389 (977)
.|.|...+ .|.+.|.+++..+..+.|+.+..+|+|.|.+++.+|+|.|+|.|.|..|.....+.|.|++++...+
T Consensus 445 ~i~C~~~asP~p~~~W~k~~~~~~~~~r~~i~edGtL~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L~Vkd~tri~~--- 521 (1051)
T KOG3513|consen 445 TIDCKPFASPKPKVSWLKGGEKLLQSGRIRILEDGTLEISNVTRSDAGKYTCVAENKLGKAESTGNLIVKDATRITL--- 521 (1051)
T ss_pred EEeeccCCCCcceEEEEcCCcccccCceEEECCCCcEEecccCcccCcEEEEEEEcccCccceEEEEEEecCceEEe---
Confidence 99999999 7789999999977888999999999999999999999999999999999999999999998764432
Q ss_pred CCCCCCCCCCCCCCCe----------EEeeCCC--ceEEEEEcCCC--CCCcccceEEEEEeecCCCCCCCCCCCCcccE
Q psy574 390 RAPEPSTYPGPPTKPT----------LVNQTAN--GLTLAWSRNNQ--IGSSSLLGYQVEMYSRPLPSSSPSGDTATATW 455 (977)
Q Consensus 390 ~~~~~~~~p~~P~~~~----------v~~~~~~--sv~lsW~~p~~--~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w 455 (977)
+|.+.. |....+. .+.+.|...+. +......+|.+.
T Consensus 522 ----------~P~~~~v~~g~~v~l~Ce~shD~~ld~~f~W~~nG~~id~~~~~~~~~~~-------------------- 571 (1051)
T KOG3513|consen 522 ----------APSNTDVKVGESVTLTCEASHDPSLDITFTWKKNGRPIDFNPDGDHFEIN-------------------- 571 (1051)
T ss_pred ----------ccchhhhccCceEEEEeecccCCCcceEEEEEECCEEhhccCCCCceEEe--------------------
Confidence 333322 2222121 24555655433 111111222221
Q ss_pred EEeceecCcCeEEEE--ccCCCCeEEEEEEEEcCCCCCCCCCCCceEEeeccccccccccCCcceeecCCCCCCCcchHH
Q psy574 456 VRVATNVPSPILTVT--NLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLR 533 (977)
Q Consensus 456 ~~~~~~~~~~~~~i~--~L~p~t~Y~~~V~a~n~~G~s~~S~~s~~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~g~~~~ 533 (977)
. ......++|. .|+..-.|.++++.. ..+..+.....++.
T Consensus 572 ---~-~~~~g~L~i~nv~l~~~G~Y~C~aqT~---~Ds~s~~A~l~V~g------------------------------- 613 (1051)
T KOG3513|consen 572 ---D-GSDSGRLTIANVSLEDSGKYTCVAQTA---LDSASARADLLVRG------------------------------- 613 (1051)
T ss_pred ---C-CcCccceEEEeeccccCceEEEEEEEe---ecchhcccceEEec-------------------------------
Confidence 1 1111334444 477788899988873 22222222222222
Q ss_pred HHhhcccccCCceEEEEEeeEeCCCeEEEEEEec--CCCccceEEEEEEecCCCCCceEEEEeecCccc---eEEECCCC
Q psy574 534 RARQHLQEGGGSLIELTEVKPMTSTSVKLTWEIL--NTDYIEGVYIYSRGLDPPASVAMLTVLHAGEAS---GFLVTGLA 608 (977)
Q Consensus 534 ~~~~~l~~~~~~~~~~l~~~~~~~tsv~lsW~~p--~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~---~~~i~~L~ 608 (977)
++.++.++++..++.++++|+|++. ++.+|..|.|+++..- ...|+... ..+.... +.++-+|.
T Consensus 614 ---------pPgpP~~v~~~~i~~t~~~lsW~~g~dn~SpI~~Y~iq~rt~~-~~~W~~v~-~vp~~~~~~~sa~vv~L~ 682 (1051)
T KOG3513|consen 614 ---------PPGPPPDVHVDDISDTTARLSWSPGSDNNSPIEKYTIQFRTPF-PGKWKAVT-TVPGNITGDESATVVNLS 682 (1051)
T ss_pred ---------CCCCCCceeEeeeccceEEEEeecCCCCCCCceEEeEEecCCC-CCcceEee-ECCCcccCccceeEEccC
Confidence 1222246899999999999999998 6688999999999884 78998877 3333333 68899999
Q ss_pred CCcEEEEEEEEeecceeCCCCC-ceEEeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecC-C
Q psy574 609 HYSRYEFFLVPFFGSVDGKPSN-LRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGN-N 686 (977)
Q Consensus 609 p~t~Y~~~V~a~n~~g~g~~s~-~~~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~-~ 686 (977)
|+..|+|+|+|.|..|.|.+|. +..++|.+++|...|.+|.......+.+.|+|+|.+...+||.-.+|+|.|+..+ .
T Consensus 683 Pwv~YeFRV~AvN~iG~gePS~pS~~~rT~ea~P~~~P~nv~g~g~~~~eLvItW~Pl~~~~qNG~gfgY~Vswr~~g~~ 762 (1051)
T KOG3513|consen 683 PWVEYEFRVVAVNSIGIGEPSPPSEKVRTPEAAPSVNPSNVKGGGGSPTELVITWEPLPEEEQNGPGFGYRVSWRPQGAD 762 (1051)
T ss_pred CCcceEEEEEEEcccccCCCCCCccceecCCCCCccCCccccccCCCCceEEEEeccCCHHHccCCCceEEEEEEeCCCC
Confidence 9999999999999999999996 6779999999999999999988888999999999998899999999999999987 4
Q ss_pred cceEEEEe-cCCcCeEEecC--CCCCceEEEEEEEEcCCCcCCCCCceEEeecCCC
Q psy574 687 SALINMTV-SASTPTLLLTN--LSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGP 739 (977)
Q Consensus 687 ~~~~~~~~-~~~~~~~~l~~--L~p~t~Y~~~V~A~~~~G~g~~S~~~~~~t~~~~ 739 (977)
..+....+ +.+...+.+.+ -.|.+.|.+.|+|+|..|.|+.|+.+.+...+..
T Consensus 763 ~~W~~~~v~~~d~~~~V~~~~st~~~tpyevKVqa~N~~GeGp~s~~~v~~S~Ed~ 818 (1051)
T KOG3513|consen 763 KEWKEVIVSNQDQPRYVVSNESTEPFTPYEVKVQAINDQGEGPESQVTVGYSGEDE 818 (1051)
T ss_pred cccceeEecccCCceEEEcCCCCCCcceeEEEEEEecCCCCCCCCceEEEEcCCCC
Confidence 25554444 44445555544 4568999999999999999999999999888766
No 6
>KOG4222|consensus
Probab=100.00 E-value=1.1e-47 Score=435.80 Aligned_cols=660 Identities=25% Similarity=0.324 Sum_probs=486.1
Q ss_pred cccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCC--CceEEEecCcEEEEcCCC-----CCCCeEEE
Q psy574 5 REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFEN--SKRLRLVDGTNLAIQDSR-----KTDDGRYQ 77 (977)
Q Consensus 5 ~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~--~~r~~~~~~g~L~I~~v~-----~~D~G~Y~ 77 (977)
.+.+...|.+..+..|+.++|.|.+ .|.|+|+|+|+|+|+...... +.|+-+ .+|+|.+-.+- ..|.|.|+
T Consensus 31 ~p~iiehp~d~vvs~~~patlnc~a-sG~ppPti~w~k~G~~~~~~e~~shR~~l-p~gsLf~l~~ahg~~a~~d~G~y~ 108 (1281)
T KOG4222|consen 31 PPRIIEHPHDLVVSKGEPATLNCKA-SGDPPPTIEWYKDGENVFKGEPGSHRFLL-PDGSLFLLRLAHGKKAGHDHGVYS 108 (1281)
T ss_pred CCceEecchhhhccCCCCceeecCC-CCCCCCceecccCCcccCCCCCCCcceec-CCccEEEEecccCCcccCCCceeE
Confidence 4667788999999999999999999 999999999999997554322 334444 46776654332 23999999
Q ss_pred EEEEecCceeeeEeEEEEEEcC-CeEEeCCCceEEeCCCeEEEEEEe-cccCceEEEEEECCeeCC---CCceEEeccce
Q psy574 78 CVVKNVAGTRESTDAVLRVLVK-PYIIRGPKDTTVSASSIIVFECSV-GGDAVLTVHWKRLGSAMP---EDRMSVLPSRS 152 (977)
Q Consensus 78 C~a~n~~g~~~s~~~~l~V~~~-P~~~~~p~~~~v~~G~~v~l~C~v-~g~p~~~i~W~k~~~~l~---~~~~~~~~~~~ 152 (977)
|++.|..|+..+..+.|.|... -.|-..|.+..+..|+.+.|.|.- .|.|.+.+.|.|+|..+. ..++.+..++.
T Consensus 109 cvasn~~g~avSr~a~L~vavlrddfrv~prd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~~~~~lisgG~ 188 (1281)
T KOG4222|consen 109 CVASNRLGEAVSRGASLIVAVLRDDFRVSPRDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDVPIIALISGGN 188 (1281)
T ss_pred eeecCccceeeecCceEEEEEechhcccCcccccccccceeEEeccCCCCCCCCcceeecCCCccccccceeEEEecCCc
Confidence 9999999999998888887743 467778888899999999999987 789999999999999886 24555668999
Q ss_pred EEEccCccCCCeEEEEEEEeCCee-EEEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeee
Q psy574 153 LQLSDVRLEDAGEYVCEAENAVGK-ISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLI 231 (977)
Q Consensus 153 L~I~~v~~~D~G~Y~C~a~n~~g~-~~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~ 231 (977)
|.|.++...|+|.|.|++.|.+|. .+..++|+|+..|.|...|.+..+..|..+.|.|.+.|.|.|.+.|.+++..+
T Consensus 189 LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~e~P~f~~rp~~~~v~~g~~~~f~c~v~GdP~P~Vrwkk~~~~~-- 266 (1281)
T KOG4222|consen 189 LLISNVRKSDEGTYACVATNMVGERESIPARLSVQEKPWFWKRPKDLAVLVGAAAEFDCRVGGDPQPTVRWKKDDPSL-- 266 (1281)
T ss_pred EEEeccccCCCceeeeeecccccccccccceeeeccCCccccccccceeecccccccccccCCCCCCceeeeccCCCC--
Confidence 999999999999999999999998 55679999999999999999999999999999999999999999999977655
Q ss_pred cCCCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEECCCCCCCCeEEeCCCceeecCCCcE
Q psy574 232 YPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEA 311 (977)
Q Consensus 232 ~~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~~~~~~pp~i~~~p~~~~v~~g~~~ 311 (977)
...++.+... ..+|.|.++...|.|.|. |.|.|..|.....+.++|+. +|.+...|.+..+..|..+
T Consensus 267 ----P~~ry~i~~d---~qtl~i~r~tp~deg~y~-C~a~n~vG~l~asa~ltV~a-----pP~f~kkp~dq~v~lg~~v 333 (1281)
T KOG4222|consen 267 ----PRSRYSILDD---TQTLRIDRVTPTDEGTYV-CPAENLVGGLEASATLTVQA-----PPSFGKKPRDQKVALGGTV 333 (1281)
T ss_pred ----Cccceeeeec---cccccccccCCCccccee-eeccccccccccccceEEec-----CcccccccCccccccCceE
Confidence 4567776652 348999999999999999 99999999999999999999 8899999999999999999
Q ss_pred EEEEEEcc--CceEEEEECCEEc--------CCCCcEEEecCceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEEC-
Q psy574 312 RLRCQVRG--EGSVQWWRGEREV--------GSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFES- 380 (977)
Q Consensus 312 ~L~C~~~~--~p~i~W~~~g~~l--------~~~~~~~~~~~~sl~I~~v~~~d~G~Y~C~a~n~~G~~~~s~~l~v~~- 380 (977)
+|.|.+.+ .|.+.|.+.|... ....+..+...++|+|.+++..|.|.|.|...+..|.....+.+.+.+
T Consensus 334 t~pc~~~gnP~PavfW~keg~q~llf~~~p~~~~~r~svs~~g~L~it~v~~~d~g~Yvcq~~~~~~ss~~~a~~~qt~~ 413 (1281)
T KOG4222|consen 334 TFPCETLGNPPPAVFWLKEGSQDLLFSASPPSSNGRGSVSPTGTLTITNVRQSDEGYYVCQTQTSAGSSLTKAYLEQTDV 413 (1281)
T ss_pred EeeeecCCCCCcceEEeccCcceecccCCCCCcCccceecCCCCcccccccccccceEeecccccccccccceeEEEEee
Confidence 99999999 7789999987643 223677777888999999999999999999999998876666665542
Q ss_pred ----CCCCCCcccCCCCCCCCC-CCCCCCeEEeeCCCceEEEEEcCCCCCCcccceEEEEEeecCCCCCCCCCCCCcccE
Q psy574 381 ----PTNPNIGFFRAPEPSTYP-GPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATW 455 (977)
Q Consensus 381 ----~~~~~~~~~~~~~~~~~p-~~P~~~~v~~~~~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w 455 (977)
.|.+.+... +....++ ..-..+.+.........+.|-.... .|. .|
T Consensus 414 ~~~~rPpp~i~~g--~~nQtl~v~s~a~l~c~atg~P~p~i~wl~dg~---------~v~------------------~~ 464 (1281)
T KOG4222|consen 414 LTDSRPPPIIEQG--PANQTLPVGSTASLPCSATGAPTPNISWLKDGC---------NVM------------------NP 464 (1281)
T ss_pred eccCCCCceeeec--ccccccccCcccccChhhhCCCCCCchhhhccc---------ccc------------------cC
Confidence 122211100 0000011 0011112223333344555543322 010 01
Q ss_pred EEeceecCcCeEEEEccCCCCeEEEEEEEEcCCCCCCCCCCCceEEeeccccccccccCCcceeecCCCCCCCcchHHHH
Q psy574 456 VRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRA 535 (977)
Q Consensus 456 ~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~G~s~~S~~s~~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~g~~~~~~ 535 (977)
..-.......+..+.+|+-...|.+.+.|.+..|.+.+|. ..++....... +-.+-.|+..+
T Consensus 465 d~~~s~~~~~~l~i~dl~~~DtG~YTc~as~~~ges~wSa---tl~v~~~~~s~---------------q~~r~~D~S~~ 526 (1281)
T KOG4222|consen 465 DSRISQQEIGSLRIRDLKGPDTGRYTCIASDESGESTWSA---TLTVEKAGSSQ---------------QFCRCEDPSAL 526 (1281)
T ss_pred CcccceeeeceeeeeeeecCCCcceeeeccCcccccccce---eeEhhhcCccc---------------ccccCCChhhC
Confidence 1000111234567888888888999999999988887663 23221110000 00000011111
Q ss_pred hhcccccCCceEEEEEeeEeCCCeEEEEEEec---CCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcE
Q psy574 536 RQHLQEGGGSLIELTEVKPMTSTSVKLTWEIL---NTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSR 612 (977)
Q Consensus 536 ~~~l~~~~~~~~~~l~~~~~~~tsv~lsW~~p---~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~ 612 (977)
+... .--.+..++.++++|+|.+. +..++.+|.++|...+....|....-. ...+.+.|.+|+|.+.
T Consensus 527 pS~p--------~~p~v~~v~~~~v~LsW~~~s~sg~vP~s~yiieafs~~~~etw~~ta~~--v~~t~~~I~gL~P~~s 596 (1281)
T KOG4222|consen 527 PSPP--------GTPGVVNVSRTSVTLSWQPTSPSGAVPASGYIIEAFSPDLGETWQTTAGR--VKTTTYAIRGLKPNLS 596 (1281)
T ss_pred CCCC--------CCCccccCCCceEEecccCCCCCCccccchhHHHHhhhhhcccccccccc--cccceeeecCcCccce
Confidence 1111 11345678899999999998 357889999999887777777665443 3568899999999999
Q ss_pred EEEEEEEeecceeCCCCC-ceEEeccCCCCCCCC------------ceeE---EEEecCcEEEEEeeCCCCCCCCeeeeE
Q psy574 613 YEFFLVPFFGSVDGKPSN-LRAVRTLECEPSGVP------------QLTD---PVLLNATSVLLKWKPPPVGTHNGVIRT 676 (977)
Q Consensus 613 Y~~~V~a~n~~g~g~~s~-~~~~~T~~~~P~~~P------------~~v~---~~~~~~~sv~v~W~~p~~~~~ng~i~~ 676 (977)
|.|.|+|+|..|.+.++. .-.++|.+..+...- ..++ ...++.++|.+.|..+. .+..+.|.+
T Consensus 597 ylf~vRa~n~~Gis~Ps~~S~~vrta~a~~~~a~ad~~k~~~~ls~~l~~l~~~~~L~asslr~~w~~~k-q~~~~~i~g 675 (1281)
T KOG4222|consen 597 YLFLVRAENEQGISDPSTSSDPVRTAPADAAAAGADHQKVQRELSNELLRLSNPNVLNASSLRLGWTKDK-QHGSQYIQG 675 (1281)
T ss_pred eeeeeeccccccccCCcccCCccccCCCChhhhhhhHHHHHHhhcccceeeccccccchhheeeeeeeec-ccCcccccc
Confidence 999999999999887764 333555544332110 0122 23457789999999874 445678999
Q ss_pred EEEEEEecC---CcceEEEEecCCcCeEEecCCCCCceEEEEEEEEcCCCc---CCCCCceEEeecCCC
Q psy574 677 YQIIVGGGN---NSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGT---GPYSRPALLSLTSGP 739 (977)
Q Consensus 677 Y~v~~~~~~---~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~~G~---g~~S~~~~~~t~~~~ 739 (977)
|+|.|+... ..............++.+.+|+|++.|+|.++-+...|. |..|.+..+.|....
T Consensus 676 ~~I~~r~~~~~~a~~s~~~v~~~t~~s~v~~nl~p~t~ye~f~~Pf~~~~~s~~g~pS~sk~alt~e~~ 744 (1281)
T KOG4222|consen 676 YRISYRSLGSQLAQWSNAGVTVPTPESVVVPNLKPGTNYEFFVRPFFPHGYSIQGAPSNSKTALTLEEP 744 (1281)
T ss_pred eEEEeccCccccccccccceeccCCcceeccccCCCccceeeccCccCCCcceecCCcccccccccccC
Confidence 999999865 222223333456788999999999999999999988664 667777766665433
No 7
>KOG4194|consensus
Probab=99.97 E-value=3.7e-30 Score=275.10 Aligned_cols=275 Identities=28% Similarity=0.454 Sum_probs=231.8
Q ss_pred ccccceecccceEEeCCCcEEEEEECCCC-CCCCeEEEEeCCEEeec---CCCceEEEec-----------CcEEEEcCC
Q psy574 4 LREEFRVQPKSQRVAAGDTALLECGPPRG-HPEPTLVWKKNGHPIDF---ENSKRLRLVD-----------GTNLAIQDS 68 (977)
Q Consensus 4 l~~~~~~~p~~~~v~~G~~v~L~C~~~~g-~P~~~v~W~k~g~~l~~---~~~~r~~~~~-----------~g~L~I~~v 68 (977)
++|+++.+|.++....|+.++|+|.+.+. ..+..+.|+|+++.... ++..++.... .+.|.+.||
T Consensus 502 pkpqI~~qPe~~~al~g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~nV 581 (873)
T KOG4194|consen 502 PKPQIVTQPETVSALIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLDNV 581 (873)
T ss_pred CCcceecCchHhhhhhccceEEEEEeccCCCCCceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhheeeeeee
Confidence 67899999999999999999999998332 33458999998875431 1111111111 145999999
Q ss_pred CCCCCeEEEEEEEecCceeeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCee-CCCC---c
Q psy574 69 RKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSA-MPED---R 144 (977)
Q Consensus 69 ~~~D~G~Y~C~a~n~~g~~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~-l~~~---~ 144 (977)
+..|+|.|+|+++|..|+..+..++|+|...|.|...|.+.++..|+.+.|.|.+.|.|.|+|.|.|+|+. .+.. |
T Consensus 582 t~td~grYQCVvtN~FGStysqk~KltV~~~PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFPAA~eRR 661 (873)
T KOG4194|consen 582 TFTDEGRYQCVVTNHFGSTYSQKAKLTVNQAPSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFPAARERR 661 (873)
T ss_pred ecccCceEEEEEecccCcchhheeEEEeeccCccccCcccceeecccceeeeeeccCCCCcceeehhcCCCCCchhhhhe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999876 5542 3
Q ss_pred eEEe-ccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEEecCCC-CeEEE
Q psy574 145 MSVL-PSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPP-PSTFW 222 (977)
Q Consensus 145 ~~~~-~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~-~~i~W 222 (977)
.++. .+..+.|.+|..+|.|.|+|.|.|.+|.+++.++|+|...|.+..+..+..|..|+++.|.|.+.+.|. |.+.|
T Consensus 662 l~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e~p~f~~PL~~~~V~~get~vlqC~a~~~~a~pr~~W 741 (873)
T KOG4194|consen 662 LHVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLETPSFSIPLEDQLVVVGETLVLQCLAEGAPADPRLEW 741 (873)
T ss_pred eeecCCCCEEEEecccccccceeEEeeeccccceeeceEEEEecCCcccccccceEEEecceEEEEEecCCCCCCccccc
Confidence 3443 678899999999999999999999999999999999999999999999999999999999999999888 89999
Q ss_pred EEcCeeeeecCCCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEEC
Q psy574 223 MLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSG 287 (977)
Q Consensus 223 ~~~g~~~~~~~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~ 287 (977)
+|+++++...... .. .++...|.+.+...+|+|.|+ |...|..|.......+.+..
T Consensus 742 ~k~d~pil~t~rh-----~f---~d~dQllvv~~~~~~daG~yT-cem~~~~~~~~~~i~l~~~~ 797 (873)
T KOG4194|consen 742 FKEDKPILITERH-----TF---PDGDQLLVVKENLVEDAGIYT-CEMSNTLGTERIHICLLVYQ 797 (873)
T ss_pred cCCCCceEEeecc-----cC---CCCCeEEEEEehhhhhcceEE-EEEEeeccceeeEEEEEEee
Confidence 9999988654321 11 134448889999999999999 99999999877666665554
No 8
>KOG0196|consensus
Probab=99.97 E-value=2.7e-29 Score=277.48 Aligned_cols=299 Identities=20% Similarity=0.240 Sum_probs=225.5
Q ss_pred CCCCCCCCCeEEeeCCCceEEEEEcCCCCCCcccceEEEEEeecCCCCCCCCCCCCcccEEEeceecCcCeEEEEccCCC
Q psy574 396 TYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVG 475 (977)
Q Consensus 396 ~~p~~P~~~~v~~~~~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~i~~L~p~ 475 (977)
.+|++|.++... ++.+++.|+|.+|.+.|+.....|.|.++.+....+.|..|.++..+..-...+.++++++.+|.|.
T Consensus 330 ~PPSaP~nlis~-vn~Ts~~L~W~~P~d~GGR~Di~y~v~Ck~c~~~~~~C~~Cg~~V~f~P~q~gLt~~~V~v~~L~ah 408 (996)
T KOG0196|consen 330 RPPSAPRNLISN-VNGTSLILEWSPPADTGGREDITYNVICKKCGGGRGACEPCGDNVRFTPRQRGLTETSVTVSDLLAH 408 (996)
T ss_pred CCCCccceeeee-cccceEEEEecCCcccCCCcceEEEEEeeccCCCCCccccCCCCceECCCCCCcccceEEEeccccc
Confidence 578999998654 9999999999999999999999999999999988889999999999999888999999999999999
Q ss_pred CeEEEEEEEEcCCCCCCCCCCCceEEeeccccccccccCCcceeecCCCCCCCcchHHHHhhcccccCCceEEEEEeeEe
Q psy574 476 LTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPM 555 (977)
Q Consensus 476 t~Y~~~V~a~n~~G~s~~S~~s~~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~g~~~~~~~~~l~~~~~~~~~~l~~~~~ 555 (977)
++|+|.|.|+| |.|..++. ++
T Consensus 409 ~~YTFeV~AvN--gVS~lsp~-------------------------~~-------------------------------- 429 (996)
T KOG0196|consen 409 TNYTFEVEAVN--GVSDLSPF-------------------------PR-------------------------------- 429 (996)
T ss_pred cccEEEEEEee--cccccCCC-------------------------CC--------------------------------
Confidence 99999999999 66543321 00
Q ss_pred CCCeEEEEEEecCCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeecceeCCCCCceEEe
Q psy574 556 TSTSVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVR 635 (977)
Q Consensus 556 ~~tsv~lsW~~p~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~g~~s~~~~~~ 635 (977)
....+.++
T Consensus 430 ------------------------------------------------------------------------~~a~vnIt 437 (996)
T KOG0196|consen 430 ------------------------------------------------------------------------QFASVNIT 437 (996)
T ss_pred ------------------------------------------------------------------------cceeEEee
Confidence 12236778
Q ss_pred ccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCcceEEEEecCCcCeEEecCCCCCceEEEE
Q psy574 636 TLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRYSVS 715 (977)
Q Consensus 636 T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~ 715 (977)
|.+.+|+ +..+++......++|.|+|..| +.+||.|..|+|+|.+++.+......+....+.++|.+|+|++.|.|+
T Consensus 438 t~qa~ps-~V~~~r~~~~~~~sitlsW~~p--~~png~ildYEvky~ek~~~e~~~~~~~t~~~~~ti~gL~p~t~Yvfq 514 (996)
T KOG0196|consen 438 TNQAAPS-PVSVLRQVSRTSDSITLSWSEP--DQPNGVILDYEVKYYEKDEDERSYSTLKTKTTTATITGLKPGTVYVFQ 514 (996)
T ss_pred ccccCCC-ccceEEEeeeccCceEEecCCC--CCCCCcceeEEEEEeeccccccceeEEecccceEEeeccCCCcEEEEE
Confidence 8888887 5568998998999999999999 899999999999999977555566677778899999999999999999
Q ss_pred EEEEcCCCcCCCCCceEEeecCCCCCCcccccccCCCCCCCCCCcccccccccccccccchhhhHHHHHHHHHH--HHhe
Q psy574 716 LAATNRAGTGPYSRPALLSLTSGPEPRLEDWASQSGRSRGDGTMETDLTDLTGGAWLSAPWFIALLTSMVAVMA--LLFL 793 (977)
Q Consensus 716 V~A~~~~G~g~~S~~~~~~t~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~lll--~i~~ 793 (977)
|||+|.+|.|++|.+..|+|.+... ......+..++++.++++++++| +++.
T Consensus 515 VRarT~aG~G~~S~~~~fqT~~~~~--------------------------~~~~~~~l~~i~g~~~~~v~~lll~~vv~ 568 (996)
T KOG0196|consen 515 VRARTAAGYGPYSGKHEFQTLPSES--------------------------SSQSGEQLPLIIGSILAGVVFLLLAAVVV 568 (996)
T ss_pred EEEecccCCCCCCCceeeeecCccc--------------------------ccccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999877520 00111233455544443333332 2222
Q ss_pred eeEEEEee-ccccccc--------ccCC--CCCCCCceeeccccccccCCCCCCCCCCCCCceeeecCCCCCCC
Q psy574 794 AMFFVRRR-TLHAKKS--------SLDH--NSAGPGLLATPISLKAASGLPHPGGGLTTANEGLWIDGKAGAGL 856 (977)
Q Consensus 794 ~~~~~~rr-~~~~k~~--------~~~~--~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~ 856 (977)
+.++++|| ..+.++. .+.. ...|+++|++|++||+|++|+|.-.. -...+++-|+.-=|.+.
T Consensus 569 ~~~~~~r~~~~~~~~~~~~t~~~~~~~~~~~~pG~k~YiDP~TYEDPnqAvreFak-EId~s~i~Ie~VIGaGE 641 (996)
T KOG0196|consen 569 VAIVCSRKRCGYSRAEQEYTEKLQHYSNGEQLPGTKTYIDPHTYEDPNQAVREFAK-EIDPSCVKIEKVIGAGE 641 (996)
T ss_pred HhheeecccccchhcccCCChhHhhhhcCCCCCCceeecCCccccCccHHHHHhhh-hcChhheEEEEEEeccc
Confidence 33333333 1222221 1111 23579999999999999999987421 12456666665544444
No 9
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.95 E-value=4.6e-26 Score=248.33 Aligned_cols=257 Identities=19% Similarity=0.318 Sum_probs=189.1
Q ss_pred ceEEeCCCcEEEEEEC----CCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecCceeee
Q psy574 14 SQRVAAGDTALLECGP----PRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRES 89 (977)
Q Consensus 14 ~~~v~~G~~v~L~C~~----~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~s 89 (977)
...+.+|+.+.|.|.+ ..|.|.+.|.|+|+|... ..++.+..+..|.|.+++.+|+|.|+|++.|..|...
T Consensus 35 ~~~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~----~~~~~~~~g~~l~i~~~~~~DsG~Y~C~a~N~~g~~~- 109 (326)
T PHA02785 35 SFMELENEPVILPCPQINTLSSGYNILDILWEKRGADN----DRIIPIDNGSNMLILNPTQSDSGIYICITKNETYCDM- 109 (326)
T ss_pred hhhhhcCCCEEEECCCccccccCCCCceEEEEECCCcc----ceEEEccCCceEEEcccCcccCeEEEEEEECCCcceE-
Confidence 3567899999999975 268899999999998543 1233444344599999999999999999999887633
Q ss_pred EeEEEEEEcC--CeEEeCCCceEEeCCCeEEEEEE-----ecccCceEEEEEECCeeCCCCceEEeccceEEEccCccCC
Q psy574 90 TDAVLRVLVK--PYIIRGPKDTTVSASSIIVFECS-----VGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLED 162 (977)
Q Consensus 90 ~~~~l~V~~~--P~~~~~p~~~~v~~G~~v~l~C~-----v~g~p~~~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~D 162 (977)
..+.|+|... |.+...+....+.+|+.+.|.|. ..++|.+.|+|+++. .+...++....++.|.|.+++.+|
T Consensus 110 ~s~~L~V~~~~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~-~~~~~r~~~~~~~~L~i~~v~~~d 188 (326)
T PHA02785 110 MSLNLTIVSVSESNIDLISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHR-RLRNKRLKQRTPGIITIEDVRKND 188 (326)
T ss_pred EEEEEEEEecCCCccceeeccceecccCcEEEECCChhhcccCCCCceEEEccCC-ccCCcceEecCCCeEEEeecChhh
Confidence 5577777643 33433445567789999999997 246788999999865 455556666567899999999999
Q ss_pred CeEEEEEEEeCCeeEE----EEEEEEEee--CCeEEecCCCcEEeeCCeEEEEEEEecCCCC---eEEEEEcCeeeeecC
Q psy574 163 AGEYVCEAENAVGKIS----ASATLTVQM--APIVRERPSDLRLEVGRDAVFLCGIEGSPPP---STFWMLEGNRSLIYP 233 (977)
Q Consensus 163 ~G~Y~C~a~n~~g~~~----~~~~L~V~~--~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~---~i~W~~~g~~~~~~~ 233 (977)
+|.|+|.|.|..|... ..+.|.|.. .|.....|....+..|+.++|.|.+.+.|.+ .+.|++||..+....
T Consensus 189 ~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~~~p~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~~~~ 268 (326)
T PHA02785 189 AGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTMQLPEGVVTSIGSNLTIACRVSLRPPTTDADVFWISNGMYYEEDD 268 (326)
T ss_pred CeEEEEEEEeccCCEEEeEEEEEEEEEeccCCCceecCCCcEEecCCCcEEEEEEEECCCCCCCceEEEEECCEECCCcC
Confidence 9999999999877543 344566652 2233455677788899999999999998864 799999998764322
Q ss_pred CCccccEEEEEcc-------CCceEEEEeecccCCCCeEEEEEEEcCCCce
Q psy574 234 GDRVDNIQAEITS-------DGMNLLKIQNVSRTAAPLIILCLGVNAAGSD 277 (977)
Q Consensus 234 ~~~~~~~~~~~~~-------~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~ 277 (977)
....+++...... .....|+|.+++.+|.|.|+ |.|.|..+..
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~-C~A~n~~~~~ 318 (326)
T PHA02785 269 EDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFT-CMAFTIPSIS 318 (326)
T ss_pred CCCceeEEEecCccccccceeeeEEEEECCcchhcCeeeE-EEEEeccCce
Confidence 1222344332210 01248999999999999999 9999987433
No 10
>KOG4194|consensus
Probab=99.95 E-value=8.3e-27 Score=249.61 Aligned_cols=272 Identities=26% Similarity=0.460 Sum_probs=228.2
Q ss_pred cCCeEEeCCCceEEeCCCeEEEEEEecc--cCceEEEEEECCeeCCCCceE----Ee-------------ccceEEEccC
Q psy574 98 VKPYIIRGPKDTTVSASSIIVFECSVGG--DAVLTVHWKRLGSAMPEDRMS----VL-------------PSRSLQLSDV 158 (977)
Q Consensus 98 ~~P~~~~~p~~~~v~~G~~v~l~C~v~g--~p~~~i~W~k~~~~l~~~~~~----~~-------------~~~~L~I~~v 158 (977)
.+|.+...|.++....|+.++|+|.+.+ ..+..+.|.+++...+....+ +. -.+.|.+.+|
T Consensus 502 pkpqI~~qPe~~~al~g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~nV 581 (873)
T KOG4194|consen 502 PKPQIVTQPETVSALIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLDNV 581 (873)
T ss_pred CCcceecCchHhhhhhccceEEEEEeccCCCCCceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhheeeeeee
Confidence 3578889999999999999999999955 456689999997754321110 00 1246999999
Q ss_pred ccCCCeEEEEEEEeCCee-EEEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCcc
Q psy574 159 RLEDAGEYVCEAENAVGK-ISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRV 237 (977)
Q Consensus 159 ~~~D~G~Y~C~a~n~~g~-~~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~ 237 (977)
+..|+|.|+|+++|..|+ .+..++|+|...|.|...|.+..+..|+.+.|.|.+.|.|.|+|.|.|+|.. .++....
T Consensus 582 t~td~grYQCVvtN~FGStysqk~KltV~~~PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggt--dFPAA~e 659 (873)
T KOG4194|consen 582 TFTDEGRYQCVVTNHFGSTYSQKAKLTVNQAPSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGT--DFPAARE 659 (873)
T ss_pred ecccCceEEEEEecccCcchhheeEEEeeccCccccCcccceeecccceeeeeeccCCCCcceeehhcCCC--CCchhhh
Confidence 999999999999999997 6778999999999999999999999999999999999999999999999875 2344556
Q ss_pred ccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEECCCCCCCCeEEeCCCceeecCCCcEEEEEEE
Q psy574 238 DNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQV 317 (977)
Q Consensus 238 ~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~~~~~~pp~i~~~p~~~~v~~g~~~~L~C~~ 317 (977)
.|..+... +. .+.|.++..+|.|.|+ |.|.|.+|...+.+.|.|.+ .|.+..+..+..+..|+++.|.|.+
T Consensus 660 RRl~Vmpe-dd--~f~Itnvk~eD~GiYt-C~A~n~AG~isanAtL~V~e-----~p~f~~PL~~~~V~~get~vlqC~a 730 (873)
T KOG4194|consen 660 RRLHVMPE-DD--VFFITNVKIEDQGIYT-CTAQNVAGQISANATLTVLE-----TPSFSIPLEDQLVVVGETLVLQCLA 730 (873)
T ss_pred heeeecCC-CC--EEEEecccccccceeE-EeeeccccceeeceEEEEec-----CCcccccccceEEEecceEEEEEec
Confidence 67777765 34 8999999999999999 99999999999999999999 5667777889999999999999999
Q ss_pred cc---CceEEEEECCEEcCCCCcEEEec-CceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEEC
Q psy574 318 RG---EGSVQWWRGEREVGSGPRVNVTG-DGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFES 380 (977)
Q Consensus 318 ~~---~p~i~W~~~g~~l~~~~~~~~~~-~~sl~I~~v~~~d~G~Y~C~a~n~~G~~~~s~~l~v~~ 380 (977)
.+ .|.+.|+|++.++.-.++-.... +.-+.+.+....|+|.|+|...|..|.......+.+..
T Consensus 731 ~~~~a~pr~~W~k~d~pil~t~rh~f~d~dQllvv~~~~~~daG~yTcem~~~~~~~~~~i~l~~~~ 797 (873)
T KOG4194|consen 731 EGAPADPRLEWFKEDKPILITERHTFPDGDQLLVVKENLVEDAGIYTCEMSNTLGTERIHICLLVYQ 797 (873)
T ss_pred CCCCCCccccccCCCCceEEeecccCCCCCeEEEEEehhhhhcceEEEEEEeeccceeeEEEEEEee
Confidence 99 47899999998876554444333 33578888889999999999999999888777776653
No 11
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.92 E-value=1.6e-23 Score=228.33 Aligned_cols=246 Identities=17% Similarity=0.281 Sum_probs=183.4
Q ss_pred ceEEeCCCeEEEEEEe-----cccCceEEEEEECCeeCCCCceEEeccceEEEccCccCCCeEEEEEEEeCCeeEEEEEE
Q psy574 108 DTTVSASSIIVFECSV-----GGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASAT 182 (977)
Q Consensus 108 ~~~v~~G~~v~l~C~v-----~g~p~~~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~ 182 (977)
...+.+|+.+.|.|.+ .|.|.+.+.|+|++..... ...+..+..|.|.++..+|+|.|+|.|.|..+.....+.
T Consensus 35 ~~~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~~~-~~~~~~g~~l~i~~~~~~DsG~Y~C~a~N~~g~~~~s~~ 113 (326)
T PHA02785 35 SFMELENEPVILPCPQINTLSSGYNILDILWEKRGADNDR-IIPIDNGSNMLILNPTQSDSGIYICITKNETYCDMMSLN 113 (326)
T ss_pred hhhhhcCCCEEEECCCccccccCCCCceEEEEECCCccce-EEEccCCceEEEcccCcccCeEEEEEEECCCcceEEEEE
Confidence 3356689999999997 6889999999999754321 122223445889999999999999999999988888888
Q ss_pred EEEeeC--CeEEecCCCcEEeeCCeEEEEEE-----EecCCCCeEEEEEcCeeeeecCCCccccEEEEEccCCceEEEEe
Q psy574 183 LTVQMA--PIVRERPSDLRLEVGRDAVFLCG-----IEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQ 255 (977)
Q Consensus 183 L~V~~~--p~~~~~p~~~~v~~G~~v~L~C~-----~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~s~L~I~ 255 (977)
|+|... +.+...+....+.+|..+.|.|. ..+.+++.+.|+++.. + ...++.... .+ .|.|.
T Consensus 114 L~V~~~~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~-~------~~~r~~~~~--~~--~L~i~ 182 (326)
T PHA02785 114 LTIVSVSESNIDLISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRR-L------RNKRLKQRT--PG--IITIE 182 (326)
T ss_pred EEEEecCCCccceeeccceecccCcEEEECCChhhcccCCCCceEEEccCCc-c------CCcceEecC--CC--eEEEe
Confidence 888743 33333444567789999999997 2467889999987542 1 234444432 24 89999
Q ss_pred ecccCCCCeEEEEEEEcCCCceeE----EEEEEEECCCCCCCCeEEeCCCceeecCCCcEEEEEEEcc-C----ceEEEE
Q psy574 256 NVSRTAAPLIILCLGVNAAGSDLA----RASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG-E----GSVQWW 326 (977)
Q Consensus 256 ~v~~~d~G~Y~~C~a~n~~g~~~~----~~~l~V~~~~~~~pp~i~~~p~~~~v~~g~~~~L~C~~~~-~----p~i~W~ 326 (977)
+++.+|.|.|+ |.|.|..|.... .+.|.|.. ...||.+ ..|....+..|+.++|.|.+.+ + +.+.|+
T Consensus 183 ~v~~~d~G~Y~-C~~~n~~g~~~~~~t~~v~l~V~~--~~~pp~~-~~p~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~ 258 (326)
T PHA02785 183 DVRKNDAGYYT-CVLKYIYGDKTYNVTRIVKLEVRD--RIIPPTM-QLPEGVVTSIGSNLTIACRVSLRPPTTDADVFWI 258 (326)
T ss_pred ecChhhCeEEE-EEEEeccCCEEEeEEEEEEEEEec--cCCCcee-cCCCcEEecCCCcEEEEEEEECCCCCCCceEEEE
Confidence 99999999999 999999887643 33455543 2335554 4467778889999999999998 2 479999
Q ss_pred ECCEEcCCC-----CcEEEec-----------CceEEEeccCCCCCeEEEEEEEcCCCc
Q psy574 327 RGEREVGSG-----PRVNVTG-----------DGSLVLTDVTKEDSGEYTCVVKSPHGS 369 (977)
Q Consensus 327 ~~g~~l~~~-----~~~~~~~-----------~~sl~I~~v~~~d~G~Y~C~a~n~~G~ 369 (977)
+||..+... .++.... .+.|+|.+++..|.|.|+|.|.|..|.
T Consensus 259 kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~ 317 (326)
T PHA02785 259 SNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIPSI 317 (326)
T ss_pred ECCEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEeccCc
Confidence 999987532 2332211 346999999999999999999998854
No 12
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.78 E-value=9.3e-18 Score=171.29 Aligned_cols=166 Identities=17% Similarity=0.236 Sum_probs=120.6
Q ss_pred ccceEEeCCCcEEEEEECCCCC-----------CCCeEEEEeCCEEeec-CCCce--------EE-EecCcEEEEcCCCC
Q psy574 12 PKSQRVAAGDTALLECGPPRGH-----------PEPTLVWKKNGHPIDF-ENSKR--------LR-LVDGTNLAIQDSRK 70 (977)
Q Consensus 12 p~~~~v~~G~~v~L~C~~~~g~-----------P~~~v~W~k~g~~l~~-~~~~r--------~~-~~~~g~L~I~~v~~ 70 (977)
...+.+.+|++|.|.|.+ .+. ..+.|.|+|++...-. ....| -. ...+++|.|.+++.
T Consensus 29 ~~~~~v~eGe~v~L~C~~-~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~ 107 (227)
T PHA02826 29 LTPVYAKFGDPMVLLCTG-KHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVIN 107 (227)
T ss_pred cceEEecCCCCEEEEccc-cccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCCh
Confidence 356889999999999987 343 3458999998865211 11111 01 12256899999999
Q ss_pred CCCeEEEEEEEecCceeeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEec-----ccCceEEEEEECCeeCCC-Cc
Q psy574 71 TDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVG-----GDAVLTVHWKRLGSAMPE-DR 144 (977)
Q Consensus 71 ~D~G~Y~C~a~n~~g~~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~-----g~p~~~i~W~k~~~~l~~-~~ 144 (977)
+|+|.|+|.|.|..+.. ...+.|.|..+ +.+..+.+|+++.|.|.+. +.|.|.|+|+|++..+.. ++
T Consensus 108 ~DsG~Y~C~a~N~~~~~-~~~i~L~V~~~------~~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~~r 180 (227)
T PHA02826 108 IDEGIYICTISSGNICE-ESTIRLTFDSG------TINYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYTDR 180 (227)
T ss_pred HHCEEEEEEEEECCcce-EEEEEEEEecC------CccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCCCCC
Confidence 99999999999977653 34567777432 2345678999999999985 346789999999999864 45
Q ss_pred eEEe-ccceEEEccCccCCCeEEEEEEEeCC-ee---EEEEEEEEE
Q psy574 145 MSVL-PSRSLQLSDVRLEDAGEYVCEAENAV-GK---ISASATLTV 185 (977)
Q Consensus 145 ~~~~-~~~~L~I~~v~~~D~G~Y~C~a~n~~-g~---~~~~~~L~V 185 (977)
+.+. .++.|.|.+++.+|+|.|+|.|.... |. +++.++|+|
T Consensus 181 ~~~~~~~~~L~I~~V~~~DsG~YtC~a~~~~~g~~y~~t~~~~~~~ 226 (227)
T PHA02826 181 IQLRNNNSTLVIKSATHDDSGIYTCNLRFNKNSNNYNITKEYKVTI 226 (227)
T ss_pred EEEeCCCCEEEECcCCHHhCEEEEEEEEEeECCEEEEEEEEEEEEE
Confidence 5444 34589999999999999999999753 32 455555554
No 13
>KOG3515|consensus
Probab=99.73 E-value=1.4e-15 Score=173.67 Aligned_cols=353 Identities=17% Similarity=0.252 Sum_probs=230.7
Q ss_pred ccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecCceeeeEe
Q psy574 12 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTD 91 (977)
Q Consensus 12 p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~ 91 (977)
+-+..+..|+.|.|.|.+..++|.+.|.|++.+..+. .|.....+..|......++.-+.|.|.+.|..+......
T Consensus 14 ~l~~~~~~g~~v~l~C~v~~~pp~~~~eW~h~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~c~a~ns~~~~~~~~ 89 (741)
T KOG3515|consen 14 SLTVGLRLGEDVPLPCRVNSNPPEIDVEWYHSTSGEH----GRYATIADPTLVTTGDVRDTVAELNCRAFNSVGMPSRCP 89 (741)
T ss_pred CCChhhccCCcceeeeecCCCCCCcceEEEecCcccc----cccccccCCceeeecchhhhhhhhhhhhcccccCceecc
Confidence 3345899999999999997778889999999988884 455555577888888888888999999999987777777
Q ss_pred EEEEEEcCCeEEeCCCceEEeCCCeEEEEEEe--cccCceEEEEEECCeeCCCC---ce---------EEeccceEEEcc
Q psy574 92 AVLRVLVKPYIIRGPKDTTVSASSIIVFECSV--GGDAVLTVHWKRLGSAMPED---RM---------SVLPSRSLQLSD 157 (977)
Q Consensus 92 ~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v--~g~p~~~i~W~k~~~~l~~~---~~---------~~~~~~~L~I~~ 157 (977)
..+.|..+|.-...........+..+.+.|.+ .+.|.+.+.|..++...... +. .......|.+..
T Consensus 90 ~~l~v~~~pa~~~~~~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~~s~l~~~v 169 (741)
T KOG3515|consen 90 MILDVDYPPACLPELGEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTEPSLLKQTV 169 (741)
T ss_pred eeeccccCccccccccchhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCceeccccceeeEE
Confidence 78888888876666666677889999999965 66788999999987643210 00 112345688888
Q ss_pred CccCCCeEEEEEEEeCCe---eEEEEEEEEEeeCC--eEEecC-CCcEEeeCCeEEEEEEEe-cCCCCeEEEEEcCeeee
Q psy574 158 VRLEDAGEYVCEAENAVG---KISASATLTVQMAP--IVRERP-SDLRLEVGRDAVFLCGIE-GSPPPSTFWMLEGNRSL 230 (977)
Q Consensus 158 v~~~D~G~Y~C~a~n~~g---~~~~~~~L~V~~~p--~~~~~p-~~~~v~~G~~v~L~C~~~-g~p~~~i~W~~~g~~~~ 230 (977)
...+|.|.|+|.|.|... ..-....+.|..+. ...... ....+.+|+.+.|.|.+. ++|.+.++|+++.....
T Consensus 170 ~Rka~~g~~tC~A~nr~s~~l~~~~~~~i~v~~~~~~~~~~~~~~~qsF~~g~~inlvc~~~gg~P~~~~~w~~~s~~~~ 249 (741)
T KOG3515|consen 170 SRKADNGNYTCPANNRNSPGLSFAKQLTIIVEAPCKGIGITGAQEQQSFTEGQTINLVCNAQGGNPSQQQTWYKDSRPQS 249 (741)
T ss_pred EEecCCceeEcccccccCccccccceeEeecccccccceecchhhcCcccccceEEEEehhhcCCcchhhhhccccccch
Confidence 889999999999998532 22233334443222 122222 235889999999999774 58889999999876653
Q ss_pred ecCCCccccEEEEEccCCc-eEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEECCCCCCCCeEEeCCCceeecCCC
Q psy574 231 IYPGDRVDNIQAEITSDGM-NLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRS 309 (977)
Q Consensus 231 ~~~~~~~~~~~~~~~~~g~-s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~~~~~~pp~i~~~p~~~~v~~g~ 309 (977)
.. .........+.. +++.+..-...+.-... |.+.| .+ .....+.+... +......+....+..|+
T Consensus 250 ~~-----sl~~~~~sg~~v~~~~~~~~~r~~~~~~~k-c~a~n-~~--~~~~~tav~~~----~~~~~Ist~~~~ls~g~ 316 (741)
T KOG3515|consen 250 ES-----SLLSQEPSGDTVSSTLVLRVGRQDLQAQLK-CKASN-LL--AASQITAVQVK----PTAVPISTSDSGLSSGR 316 (741)
T ss_pred hh-----hcccCCCCCCcccccccccccccchhhhhh-ccccC-cc--ccceeeecccc----cccccccCccccccccc
Confidence 21 001000110111 23333333333444556 99988 11 12222333321 11222333444588899
Q ss_pred cEEEEEEEcc---CceEEEEECCEEcCCCCcEEE--ecCc-----eEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEE
Q psy574 310 EARLRCQVRG---EGSVQWWRGEREVGSGPRVNV--TGDG-----SLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFE 379 (977)
Q Consensus 310 ~~~L~C~~~~---~p~i~W~~~g~~l~~~~~~~~--~~~~-----sl~I~~v~~~d~G~Y~C~a~n~~G~~~~s~~l~v~ 379 (977)
...+.|...+ ...+.|+++............ ...+ .+........+.|.|+|.|.+.......+....+.
T Consensus 317 s~r~~c~~sss~p~~~i~w~~~~~~~~~~~~~~~~t~~~~~v~~~~~~~q~~~~~~~g~v~c~a~~~~~~~~sss~~~l~ 396 (741)
T KOG3515|consen 317 SARSSCVSSSSKPPAHIAWYKDTKMPKGSQKASSKTSNMGGVAVISHYAQPSSQQDGGQVTCPADNLELAHSSSSSFLLP 396 (741)
T ss_pred ccccceeccCCCCccceeeeccCcccccccCcccCCCcccceeeEEeeecccchhcCceEEccccccccccccccceecc
Confidence 9999999988 567999996654433211110 1111 24445666779999999999988655555554444
Q ss_pred CC
Q psy574 380 SP 381 (977)
Q Consensus 380 ~~ 381 (977)
..
T Consensus 397 ~l 398 (741)
T KOG3515|consen 397 VL 398 (741)
T ss_pred cc
Confidence 33
No 14
>KOG4258|consensus
Probab=99.73 E-value=2.1e-16 Score=176.58 Aligned_cols=300 Identities=17% Similarity=0.270 Sum_probs=194.1
Q ss_pred CCCCCCeEEeeCCCceEEEEEcCCCCCCcccceEEEEEeecCCCCC---CCCCCCCcccEEEeceecC--------cCeE
Q psy574 399 GPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSS---SPSGDTATATWVRVATNVP--------SPIL 467 (977)
Q Consensus 399 ~~P~~~~v~~~~~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~---~~~~~~~~~~w~~~~~~~~--------~~~~ 467 (977)
....++.....+.+++.++|.+-...+-....+|.+.|+....... .-.....+..|........ ..-+
T Consensus 489 ~~~l~~~~~~~~~dsi~lrW~~~~~~d~r~llg~~~~yKEaP~qNvT~~dg~~aCg~~~W~~~~v~~~~~~p~~~~~~~~ 568 (1025)
T KOG4258|consen 489 DLVLQFSSTVTSADSILLRWERYQPPDMRDLLGFLLHYKEAPFQNVTEEDGRDACGSNSWNVVDVDPPDLIPNDGTHPGF 568 (1025)
T ss_pred cceeeeeeEEeecceeEEEecccCCcchhhhheeeEeeccCCccccceecCccccccCcceEEeccCCcCCCccccccce
Confidence 3344455566678899999987665556778999999987654320 0001233446776653322 2246
Q ss_pred EEEccCCCCeEEEEEEEEcC--CCCCC-CCCCCceEEeeccccccccccCCcceeecCCCCCCCcchHHHHhhcccccCC
Q psy574 468 TVTNLTVGLTYTFLVRALNS--HGLSA-PSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGG 544 (977)
Q Consensus 468 ~i~~L~p~t~Y~~~V~a~n~--~G~s~-~S~~s~~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~g~~~~~~~~~l~~~~~ 544 (977)
.+.+|+|+|.|.+.|++... .+... .-.....+.+..+.| + ||
T Consensus 569 ~l~~LkP~TqYAvfVkT~t~t~~~~~~~A~S~I~YvqT~~~~P----s---------pP--------------------- 614 (1025)
T KOG4258|consen 569 LLDGLKPWTQYAVFVKTLTVTEAHEAYEAKSKIGYVQTLPDIP----S---------PP--------------------- 614 (1025)
T ss_pred ehhcCCccceeEEEEeeeehhhhccccccccceEEEEecCCCC----C---------Cc---------------------
Confidence 79999999999999998732 22221 111223333322222 2 22
Q ss_pred ceEEEEEeeEeCCCeEEEEEEec--CCCccceEEEEEEecCCCC-----------------------CceEEE-------
Q psy574 545 SLIELTEVKPMTSTSVKLTWEIL--NTDYIEGVYIYSRGLDPPA-----------------------SVAMLT------- 592 (977)
Q Consensus 545 ~~~~~l~~~~~~~tsv~lsW~~p--~~~~i~~Y~v~y~~~~~~~-----------------------~~~~~~------- 592 (977)
.++-...-+++.|.|+|++| +++.++.|.|.|+....+. .|+...
T Consensus 615 ---l~~ls~snsSsqi~l~W~pP~~pNG~lt~Ylv~wer~~~~~yl~~~nYC~~~~k~p~~~~~p~~~~ed~d~~~e~e~ 691 (1025)
T KOG4258|consen 615 ---LDVLSKSNSSSQILLKWKPPSQPNGNLTHYLVVWERQAEDGYLEQRNYCHKGLKLPIRADLPSFDSEDMDPLLEMEG 691 (1025)
T ss_pred ---chhhhccCcchheeEEecCCCCCCCceeEEEEEEEeccCCchHHHhccccccccccccccCCCCchhhcchhhhhcc
Confidence 34445556677899999999 8999999999998654210 010000
Q ss_pred -------------------------------------Ee-------------------e---------------------
Q psy574 593 -------------------------------------VL-------------------H--------------------- 595 (977)
Q Consensus 593 -------------------------------------~~-------------------~--------------------- 595 (977)
+. .
T Consensus 692 ~~~~Cc~c~~~~~~~~~e~eea~~~~~FEd~L~n~i~vpr~~~~krk~l~~~~n~t~~~~~~~~~~p~t~~~t~p~ei~e 771 (1025)
T KOG4258|consen 692 HTGPCCSCPPTESYPQYEDEEASEQKTFEDFLHNAIFVPRRPDRKRKSLDDVENCTRLAPTRKAEEPTTPPTTAPTEIEE 771 (1025)
T ss_pred CCCCCCCCCcccccCchhhHHHHHHHHHhhhccceeeecccCcccccccccccceeeccccccccCCCCCCCCCCccccc
Confidence 00 0
Q ss_pred ------cCccceEEECCCCCCcEEEEEEEEeeccee----CCCCCceEEeccCCC-CCCCCceeEEEEe-cCcEEEEEee
Q psy574 596 ------AGEASGFLVTGLAHYSRYEFFLVPFFGSVD----GKPSNLRAVRTLECE-PSGVPQLTDPVLL-NATSVLLKWK 663 (977)
Q Consensus 596 ------~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~----g~~s~~~~~~T~~~~-P~~~P~~v~~~~~-~~~sv~v~W~ 663 (977)
..+..++.|++|+++|.|.+.++|+|..+. +.. ..+..+|.... -...|.-+..... +.+++.|+|.
T Consensus 772 ~~p~~~n~n~~~~vi~~Lrh~tlY~i~l~aCnh~~~~~~cS~a-~~v~~RT~~~~~aD~i~g~v~we~~~~~~~v~l~w~ 850 (1025)
T KOG4258|consen 772 PKPRLENGNKESYVISGLRHFTLYRIDLQACNHATPKCGCSHA-AFVFARTMPTMGADDIPGPVTWECHIEMNSVILRWL 850 (1025)
T ss_pred cCcccccccchhhhhhccccchhhhhhHhhhcccccccccchh-hhhhhccccccccccCCCceeEecccCcceEEEecC
Confidence 023347889999999999999999998776 322 22333443322 2223333444433 7789999999
Q ss_pred CCCCCCCCeeeeEEEEEEEecCCcceEE---EEecCCcCeEEecCCCCCceEEEEEEEEcCCCcCCCCCceEEeecCCC
Q psy574 664 PPPVGTHNGVIRTYQIIVGGGNNSALIN---MTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGP 739 (977)
Q Consensus 664 ~p~~~~~ng~i~~Y~v~~~~~~~~~~~~---~~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~~G~g~~S~~~~~~t~~~~ 739 (977)
+| ..+||.|..|.|.|+....+.... ...-.....+.+.+|.+| .|.++|+|.+.+|.|++.+++.|......
T Consensus 851 EP--~~pNGli~~Y~Vk~r~~~~et~v~cvsR~~~~k~~gv~l~~l~~G-~y~~~vratSlaGng~~t~~~~~~v~~~~ 926 (1025)
T KOG4258|consen 851 EP--KEPNGLILNYEVKYRRNGDETHVECVSRMDYAKAGGVYLKRLNPG-NYSVRVRATSLAGNGSWTESVIFYVSDED 926 (1025)
T ss_pred CC--CCCCccEEEEEEEEeeccCcchhhhhhhhhhhhcCceEEEecCCC-cEEEEEEEEeeccCCCCcCCcceEEecCc
Confidence 99 899999999999999754222111 111234567889999998 79999999999999999999987665433
No 15
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.70 E-value=5.6e-16 Score=158.24 Aligned_cols=156 Identities=19% Similarity=0.218 Sum_probs=119.0
Q ss_pred CceEEeCCCeEEEEEEecccC-----------ceEEEEEECCeeC----CCCc--------eE-EeccceEEEccCccCC
Q psy574 107 KDTTVSASSIIVFECSVGGDA-----------VLTVHWKRLGSAM----PEDR--------MS-VLPSRSLQLSDVRLED 162 (977)
Q Consensus 107 ~~~~v~~G~~v~l~C~v~g~p-----------~~~i~W~k~~~~l----~~~~--------~~-~~~~~~L~I~~v~~~D 162 (977)
....+.+|+++.|.|.+.+.| .+.+.|+|++... ...+ .. ...+++|.|.+++.+|
T Consensus 30 ~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~D 109 (227)
T PHA02826 30 TPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINID 109 (227)
T ss_pred ceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHH
Confidence 456788999999999986643 4589999997542 1111 01 1135689999999999
Q ss_pred CeEEEEEEEeCCeeEEEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEEe-----cCCCCeEEEEEcCeeeeecCCCcc
Q psy574 163 AGEYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIE-----GSPPPSTFWMLEGNRSLIYPGDRV 237 (977)
Q Consensus 163 ~G~Y~C~a~n~~g~~~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~-----g~p~~~i~W~~~g~~~~~~~~~~~ 237 (977)
+|.|+|.|.|..+.....+.|.|..+ +.+..+.+|+.++|.|.+. +.|.|+|.|+|+|.++. ..
T Consensus 110 sG~Y~C~a~N~~~~~~~~i~L~V~~~------~~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~-----~~ 178 (227)
T PHA02826 110 EGIYICTISSGNICEESTIRLTFDSG------TINYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVL-----YT 178 (227)
T ss_pred CEEEEEEEEECCcceEEEEEEEEecC------CccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECC-----CC
Confidence 99999999998888888888888532 2345678999999999985 34678999999998864 23
Q ss_pred ccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCce
Q psy574 238 DNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSD 277 (977)
Q Consensus 238 ~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~ 277 (977)
.++.+.. +...|.|.+++.+|+|.|+ |.|....+..
T Consensus 179 ~r~~~~~---~~~~L~I~~V~~~DsG~Yt-C~a~~~~~g~ 214 (227)
T PHA02826 179 DRIQLRN---NNSTLVIKSATHDDSGIYT-CNLRFNKNSN 214 (227)
T ss_pred CCEEEeC---CCCEEEECcCCHHhCEEEE-EEEEEeECCE
Confidence 3555443 2238999999999999999 9999875433
No 16
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.53 E-value=9.1e-14 Score=120.44 Aligned_cols=88 Identities=30% Similarity=0.440 Sum_probs=78.2
Q ss_pred CCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceEEeccceEEEccCccCCCeEEEEEEEeCCeeEE
Q psy574 99 KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKIS 178 (977)
Q Consensus 99 ~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~ 178 (977)
+|.+...+.+..+.+|+.+.|.|.+.|.|.|.++|+|++..+.........++.|.|.+++.+|+|.|+|.|.|..|...
T Consensus 1 ~p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~ 80 (88)
T cd05851 1 PADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEISMSGAVLKIFNIQPEDEGTYECEAENIKGKDK 80 (88)
T ss_pred CCceEEccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCEEecCCCEEEECcCChhhCEEEEEEEEcCCCceE
Confidence 57888899999999999999999999999999999999988865433333567899999999999999999999999999
Q ss_pred EEEEEEEe
Q psy574 179 ASATLTVQ 186 (977)
Q Consensus 179 ~~~~L~V~ 186 (977)
..++|.|+
T Consensus 81 ~~~~l~V~ 88 (88)
T cd05851 81 HQARVYVQ 88 (88)
T ss_pred EEEEEEEC
Confidence 99998874
No 17
>KOG3515|consensus
Probab=99.53 E-value=8.5e-13 Score=151.19 Aligned_cols=484 Identities=16% Similarity=0.135 Sum_probs=287.7
Q ss_pred eEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCc-----EEEEcCCCCCCCeEEEEEEEecCceeee
Q psy574 15 QRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGT-----NLAIQDSRKTDDGRYQCVVKNVAGTRES 89 (977)
Q Consensus 15 ~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g-----~L~I~~v~~~D~G~Y~C~a~n~~g~~~s 89 (977)
..+.+|+.+.|.|.+..++|.+.++|+++...+... ..+....+| ++....-+..+.-...|.+.|. . .
T Consensus 216 qsF~~g~~inlvc~~~gg~P~~~~~w~~~s~~~~~~--sl~~~~~sg~~v~~~~~~~~~r~~~~~~~kc~a~n~-~---~ 289 (741)
T KOG3515|consen 216 QSFTEGQTINLVCNAQGGNPSQQQTWYKDSRPQSES--SLLSQEPSGDTVSSTLVLRVGRQDLQAQLKCKASNL-L---A 289 (741)
T ss_pred CcccccceEEEEehhhcCCcchhhhhccccccchhh--hcccCCCCCCcccccccccccccchhhhhhccccCc-c---c
Confidence 678999999999988899999999999998877432 111111122 3555555555566888999871 1 1
Q ss_pred EeEEEEEEcCCeE-EeCCCceEEeCCCeEEEEEEe-cccCceEEEEEECCeeCCCC----c----eEEeccceEEEccCc
Q psy574 90 TDAVLRVLVKPYI-IRGPKDTTVSASSIIVFECSV-GGDAVLTVHWKRLGSAMPED----R----MSVLPSRSLQLSDVR 159 (977)
Q Consensus 90 ~~~~l~V~~~P~~-~~~p~~~~v~~G~~v~l~C~v-~g~p~~~i~W~k~~~~l~~~----~----~~~~~~~~L~I~~v~ 159 (977)
....+.|..+|.- ...+....+..|++..+.|.. ..+|...+.|+|+....... + ........+......
T Consensus 290 ~~~~tav~~~~~~~~Ist~~~~ls~g~s~r~~c~~sss~p~~~i~w~~~~~~~~~~~~~~~~t~~~~~v~~~~~~~q~~~ 369 (741)
T KOG3515|consen 290 ASQITAVQVKPTAVPISTSDSGLSSGRSARSSCVSSSSKPPAHIAWYKDTKMPKGSQKASSKTSNMGGVAVISHYAQPSS 369 (741)
T ss_pred cceeeecccccccccccCcccccccccccccceeccCCCCccceeeeccCcccccccCcccCCCcccceeeEEeeecccc
Confidence 2234455544432 233445568889999999986 66788899999965433211 0 001122346667777
Q ss_pred cCCCeEEEEEEEeCCee--EEEEEEEEEeeCCeEEe-cCCCcEEeeCCeEEEEEEEecCC-CCeEEEEEcCeeeeecCCC
Q psy574 160 LEDAGEYVCEAENAVGK--ISASATLTVQMAPIVRE-RPSDLRLEVGRDAVFLCGIEGSP-PPSTFWMLEGNRSLIYPGD 235 (977)
Q Consensus 160 ~~D~G~Y~C~a~n~~g~--~~~~~~L~V~~~p~~~~-~p~~~~v~~G~~v~L~C~~~g~p-~~~i~W~~~g~~~~~~~~~ 235 (977)
..|.|.|+|.+.+.... .+....|.+..+|.+.. ........+++.....-.+.++| .+.+.|.+.+.++...
T Consensus 370 ~~~~g~v~c~a~~~~~~~~sss~~~l~~l~~p~~L~~~~~~v~~~e~d~~~~~~~~~~~p~~~~~~w~~~~~~~~~~--- 446 (741)
T KOG3515|consen 370 QQDGGQVTCPADNLELAHSSSSSFLLPVLPSPAFLVRHKTAVVAMEQDHQAAPLPVRGAPAERTFYWTFRLYKLSQV--- 446 (741)
T ss_pred hhcCceEEccccccccccccccceeccccCCchhhhhcccceeeccCccccccCcccCCCcccchhheecceecccc---
Confidence 89999999999987654 33445556655555433 33333444555444443333544 4578999988776321
Q ss_pred ccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEECCCCCCCCeEEeCCCceeecCCCcEEEEE
Q psy574 236 RVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRC 315 (977)
Q Consensus 236 ~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~~~~~~pp~i~~~p~~~~v~~g~~~~L~C 315 (977)
....+.+... .+ ...+.++.+.|.|.|. |.+.|..|.......+.+.. .|.+..--.......+.++.+.|
T Consensus 447 ~g~~~~v~~~-~~--~~s~~~v~~~d~g~y~-~tatns~gg~~~~~~~~~~~-----sp~~~~~~~~~~~~~~ns~~~~~ 517 (741)
T KOG3515|consen 447 DGGVVRVGAG-AG--LGSGVNVSRSDGGSYG-LTATNSPGGAQAYLLLGVHT-----SPHNHHLQDQVEGATGNSVDGEC 517 (741)
T ss_pred cCceEEeecc-cc--ccccceeeeccCCcce-eeeccCCCceeeEEeecccc-----CCcccccccccccCCCCccccee
Confidence 1122222221 12 4556779999999999 99999999988887777776 33333222334455666788999
Q ss_pred EEcc----CceEEEEECCEEcCCC-----CcEEEecCceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEECCCCCCC
Q psy574 316 QVRG----EGSVQWWRGEREVGSG-----PRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNI 386 (977)
Q Consensus 316 ~~~~----~p~i~W~~~g~~l~~~-----~~~~~~~~~sl~I~~v~~~d~G~Y~C~a~n~~G~~~~s~~l~v~~~~~~~~ 386 (977)
.... .-.+.|.+.+...... .......++.+.+........+.|.|.+.+..--+.....+.+...+....
T Consensus 518 ~q~~~~~~~~m~~~~r~ge~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~pA~~~~~l~~~s~~~v~~ 597 (741)
T KOG3515|consen 518 MQDEQPQDQQMHHEPRSGEPPSDQIDQDAPQQQLMAHAQLLVSGNSSLQASETACVVDGSSPPAGLSLVLKAYSALIVTV 597 (741)
T ss_pred eccccccchhhhcccccCCCCcccccccccccccCCccceeecccccccccceEEeecCCCCccccceEEEecccccccc
Confidence 9988 2348899887755322 223334455677777777788999999998222233333343332211100
Q ss_pred cccCCCCCCCCCCCCC----CCeEEeeCCCceEEEEEcCCCCCCcccceEEEEEeecCCCCCCCCCCCCcccEEEeceec
Q psy574 387 GFFRAPEPSTYPGPPT----KPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNV 462 (977)
Q Consensus 387 ~~~~~~~~~~~p~~P~----~~~v~~~~~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 462 (977)
+.+...-..+. .+.+......+....|.......-.....|..-+ |.. ..
T Consensus 598 -----~tp~~~~~~~g~v~as~~~~a~~~~~~~~~~~k~p~~~~~~~~~~~~~~------------------~~~---~~ 651 (741)
T KOG3515|consen 598 -----RTPNMYTAQEGCVNASDDCVASGVPSTSFTTAKTPLQTTEGPHIREKAT------------------QQG---QT 651 (741)
T ss_pred -----cCCceeeeccCcccccccceecccccceeecccCCCcccCCceEEEeee------------------ecc---cc
Confidence 00000000011 1111222233455566554431111111111111 111 01
Q ss_pred CcCeEEEEccCCCCeEEEEEEEEcCCCCCCCCCCCceEEeeccccccccccCCcceeecCCCCCCCcchHHHHhhccccc
Q psy574 463 PSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEG 542 (977)
Q Consensus 463 ~~~~~~i~~L~p~t~Y~~~V~a~n~~G~s~~S~~s~~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~g~~~~~~~~~l~~~ 542 (977)
...+..+-+-.++..|.+.|.+.|..|.+.-+-.....+.
T Consensus 652 ~s~~~~~~~~~~~~~y~~~c~t~n~lg~~~v~~~~~~~t~---------------------------------------- 691 (741)
T KOG3515|consen 652 HSSSEWILNHIDGSDYENGCTTQNLLGSDHVSGAIHSGTA---------------------------------------- 691 (741)
T ss_pred ccccccccCCcchhhhcceeeecccCCCccccceecCCcC----------------------------------------
Confidence 1122235556778889999999999998765432221111
Q ss_pred CCceEEEEEeeEeCCCeEEEEEEec-CCCccceEEEEEEecC
Q psy574 543 GGSLIELTEVKPMTSTSVKLTWEIL-NTDYIEGVYIYSRGLD 583 (977)
Q Consensus 543 ~~~~~~~l~~~~~~~tsv~lsW~~p-~~~~i~~Y~v~y~~~~ 583 (977)
+..+.++.+..+...+|-|.|.+. .++-..+|.+.|...+
T Consensus 692 -~~~~~n~~~~~~~~~~i~l~~~p~fdgg~~q~f~~~~~~~~ 732 (741)
T KOG3515|consen 692 -SVGPINLTYDNLTYSTISLEWMPGFDGGLQQRFFLKYYDLG 732 (741)
T ss_pred -CCCccceEeeeeeeeeeceeeeeccccccccceeeehhhcC
Confidence 222357888899999999999999 7788888999988776
No 18
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.51 E-value=1.7e-13 Score=121.23 Aligned_cols=91 Identities=25% Similarity=0.417 Sum_probs=79.0
Q ss_pred ccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEe---cCcEEEEcCCCCCCCeEEEEEEEe
Q psy574 6 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV---DGTNLAIQDSRKTDDGRYQCVVKN 82 (977)
Q Consensus 6 ~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~---~~g~L~I~~v~~~D~G~Y~C~a~n 82 (977)
|.|...|.++.+.+|+.+.|.|.+ .|.|.+.+.|+|||+.|... .++.+. ..+.|.|.++..+|+|.|+|.|.|
T Consensus 1 p~~~~~p~~~~v~~G~~v~l~C~~-~G~p~p~v~W~kdg~~l~~~--~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N 77 (98)
T cd05762 1 PQIIQFPEDMKVRAGESVELFCKV-TGTQPITCTWMKFRKQIQEG--EGIKIENTENSSKLTITEGQQEHCGCYTLEVEN 77 (98)
T ss_pred CceEECCcCEEEECCCEEEEEEEE-cccCCCceEEEECCEEecCC--CcEEEEecCCeeEEEECCCChhhCEEEEEEEEc
Confidence 578899999999999999999999 89999999999999999533 355544 246799999999999999999999
Q ss_pred cCceeeeEeEEEEEEcCC
Q psy574 83 VAGTRESTDAVLRVLVKP 100 (977)
Q Consensus 83 ~~g~~~s~~~~l~V~~~P 100 (977)
..|... ..+.|.|..+|
T Consensus 78 ~~G~~~-~~~~l~V~~~P 94 (98)
T cd05762 78 KLGSRQ-AQVNLTVVDKP 94 (98)
T ss_pred CCCcee-EEEEEEEecCC
Confidence 999865 56899998776
No 19
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.49 E-value=2.9e-13 Score=119.64 Aligned_cols=91 Identities=30% Similarity=0.475 Sum_probs=81.2
Q ss_pred CeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCC-CceEEe---ccceEEEccCccCCCeEEEEEEEeCCe
Q psy574 100 PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPE-DRMSVL---PSRSLQLSDVRLEDAGEYVCEAENAVG 175 (977)
Q Consensus 100 P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~-~~~~~~---~~~~L~I~~v~~~D~G~Y~C~a~n~~g 175 (977)
|.|...|.+..+..|+.+.|.|.+.|.|.+.+.|+|++..+.. .++.+. ..+.|.|.++..+|+|.|+|.|.|..|
T Consensus 1 p~~~~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G 80 (98)
T cd05762 1 PQIIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLG 80 (98)
T ss_pred CceEECCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCC
Confidence 6788889999999999999999999999999999999999864 345444 356899999999999999999999999
Q ss_pred eEEEEEEEEEeeCCe
Q psy574 176 KISASATLTVQMAPI 190 (977)
Q Consensus 176 ~~~~~~~L~V~~~p~ 190 (977)
...+.+.|.|...|.
T Consensus 81 ~~~~~~~l~V~~~P~ 95 (98)
T cd05762 81 SRQAQVNLTVVDKPD 95 (98)
T ss_pred ceeEEEEEEEecCCC
Confidence 999999999997663
No 20
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.47 E-value=4.2e-13 Score=116.45 Aligned_cols=86 Identities=51% Similarity=1.047 Sum_probs=74.7
Q ss_pred ecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecCceeee
Q psy574 10 VQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRES 89 (977)
Q Consensus 10 ~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~s 89 (977)
++|.++.+.+|++++|.|.+..|.|.+.|.|+|+|+.+... ..++.+..++.|.|.+++.+|+|.|+|.|.|..|...+
T Consensus 1 ~~p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~-~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s 79 (86)
T cd05724 1 VEPSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLD-NERVRIVDDGNLLIAEARKSDEGTYKCVATNMVGERES 79 (86)
T ss_pred CCCccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCC-CCCEEEccCCEEEEeECCcccCEEEEEEEEeccCceee
Confidence 46889999999999999998678999999999999998543 45677776889999999999999999999999998877
Q ss_pred EeEEEEE
Q psy574 90 TDAVLRV 96 (977)
Q Consensus 90 ~~~~l~V 96 (977)
..+.|.|
T Consensus 80 ~~~~l~V 86 (86)
T cd05724 80 AAARLSV 86 (86)
T ss_pred eeEEEEC
Confidence 7777654
No 21
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.46 E-value=4e-13 Score=116.40 Aligned_cols=86 Identities=27% Similarity=0.535 Sum_probs=73.6
Q ss_pred ccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecCc
Q psy574 6 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAG 85 (977)
Q Consensus 6 ~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g 85 (977)
|+|.+.|.++.+.+|+.++|.|.+ .|.|.|.|.|+|++..+.. ..++.. .++.|.|.+++.+|+|.|+|.|.|..|
T Consensus 2 p~i~~~~~~~~~~~G~~v~l~C~~-~G~P~P~v~W~k~~~~~~~--~~~~~~-~~~~L~I~~v~~~D~G~Y~C~A~N~~G 77 (88)
T cd05851 2 ADINVKFKDTYALKGQNVTLECFA-LGNPVPVIRWRKILEPMPA--TAEISM-SGAVLKIFNIQPEDEGTYECEAENIKG 77 (88)
T ss_pred CceEEccccEEEeCCCcEEEEEEe-cccCCCEEEEEECCcCCCC--CCEEec-CCCEEEECcCChhhCEEEEEEEEcCCC
Confidence 789999999999999999999999 8999999999999988743 234443 367899999999999999999999999
Q ss_pred eeeeEeEEEEE
Q psy574 86 TRESTDAVLRV 96 (977)
Q Consensus 86 ~~~s~~~~l~V 96 (977)
... ..+.|.|
T Consensus 78 ~~~-~~~~l~V 87 (88)
T cd05851 78 KDK-HQARVYV 87 (88)
T ss_pred ceE-EEEEEEE
Confidence 754 4566666
No 22
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.46 E-value=4.7e-13 Score=118.28 Aligned_cols=88 Identities=32% Similarity=0.590 Sum_probs=76.7
Q ss_pred ceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCC-----CCCCCeEEEEEEEe
Q psy574 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDS-----RKTDDGRYQCVVKN 82 (977)
Q Consensus 8 ~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v-----~~~D~G~Y~C~a~n 82 (977)
|..+|.++.+.+|++++|.|.+ .+.|.+.|.|+|||+.+....+.+..+..+|+|.|.++ +.+|.|.|+|.|.|
T Consensus 2 f~~~P~~~~~~~g~~v~l~C~v-~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~a~N 80 (95)
T cd05722 2 FLSEPSDIVAVRGGPVVLNCSA-EGEPPPKIEWKKDGVLLNLVSDERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVAQN 80 (95)
T ss_pred cEECCCCeEEcCCCCEEEeeec-ccCCCCEEEEEECCeECccccCcceEEccCCeEEEeeeeccCCCCCcCEEEEEEEEC
Confidence 6789999999999999999999 88999999999999999655555566667888998887 58999999999999
Q ss_pred c-CceeeeEeEEEEE
Q psy574 83 V-AGTRESTDAVLRV 96 (977)
Q Consensus 83 ~-~g~~~s~~~~l~V 96 (977)
. .|...++.+.|+|
T Consensus 81 ~~~G~~~s~~~~l~v 95 (95)
T cd05722 81 DSLGSIVSRTARLTV 95 (95)
T ss_pred CccCcEEEeeeEEeC
Confidence 9 9998888888765
No 23
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.45 E-value=7.9e-13 Score=116.17 Aligned_cols=88 Identities=39% Similarity=0.625 Sum_probs=74.7
Q ss_pred ccceecccceEEeCC---CcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCC-CCCCeEEEEEEE
Q psy574 6 EEFRVQPKSQRVAAG---DTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSR-KTDDGRYQCVVK 81 (977)
Q Consensus 6 ~~~~~~p~~~~v~~G---~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~-~~D~G~Y~C~a~ 81 (977)
|.|..+|.++.+.+| ++++|.|.+ .|+|.+.|+|+|||..+......++.+. +++|.|.++. ..|+|.|+|+|.
T Consensus 2 P~f~~~P~~~~~~~~~~g~~v~l~C~a-~g~P~p~i~W~~~g~~l~~~~~~~~~~~-~g~L~I~~~~~~~D~G~Y~C~A~ 79 (94)
T cd05850 2 PVFEEQPSSLLFPEGSPEEKVTLGCRA-RASPPATYRWKMNGTEIKFAPESRYTLV-AGNLVINNPQKARDAGSYQCLAI 79 (94)
T ss_pred CeeEECCCCEEecCCCCCCeEEEEeEc-eeCCCCEEEEEECCEECccCCCceEEEE-CCeEEEccCCccCcCEEEEEEEE
Confidence 678899999988777 579999999 8999999999999999965555566665 6889998865 699999999999
Q ss_pred ecCceeeeEeEEEE
Q psy574 82 NVAGTRESTDAVLR 95 (977)
Q Consensus 82 n~~g~~~s~~~~l~ 95 (977)
|..|...+..+.|.
T Consensus 80 N~~G~~~s~~a~l~ 93 (94)
T cd05850 80 NRCGTVVSREANLR 93 (94)
T ss_pred cCcCcEEEEEEEEe
Confidence 99999888776664
No 24
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.44 E-value=7.6e-13 Score=116.19 Aligned_cols=87 Identities=36% Similarity=0.646 Sum_probs=72.7
Q ss_pred ccceecccceEEe---CCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCC-CCCCeEEEEEEE
Q psy574 6 EEFRVQPKSQRVA---AGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSR-KTDDGRYQCVVK 81 (977)
Q Consensus 6 ~~~~~~p~~~~v~---~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~-~~D~G~Y~C~a~ 81 (977)
|.|..+|.++.+. +|++++|.|.+ .|.|.|.|.|+|||..|....+.++.+. ++.|.|.++. .+|+|.|+|.|.
T Consensus 2 P~f~~~p~~~~~~~~~~g~~v~l~C~~-~G~P~P~i~W~k~g~~l~~~~~~~~~~~-~g~L~i~~~~~~~D~G~Y~C~A~ 79 (94)
T cd05848 2 PVFVQEPDDAIFPTDSDEKKVILNCEA-RGNPVPTYRWLRNGTEIDTESDYRYSLI-DGNLIISNPSEVKDSGRYQCLAT 79 (94)
T ss_pred CeeEECCCcEEccCCCCCCEEEEEEEe-eecCCCEEEEEECCeECccCCCceEEee-CCeEEEccCCccCcCEEEEEEEE
Confidence 6788999998765 47899999999 9999999999999999964444455544 6889999985 699999999999
Q ss_pred ecCceeeeEeEEE
Q psy574 82 NVAGTRESTDAVL 94 (977)
Q Consensus 82 n~~g~~~s~~~~l 94 (977)
|..|...+..+.|
T Consensus 80 N~~G~~~S~~~~l 92 (94)
T cd05848 80 NSIGSILSREALL 92 (94)
T ss_pred cCCCeEEeccEEE
Confidence 9999887776554
No 25
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.42 E-value=2.4e-12 Score=112.04 Aligned_cols=88 Identities=30% Similarity=0.548 Sum_probs=76.3
Q ss_pred CCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceEEeccceEEEccCccCCCeEEEEEEEeCCeeEE
Q psy574 99 KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKIS 178 (977)
Q Consensus 99 ~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~ 178 (977)
||.+...|.+..+.+|+++.|.|.+.|.|.|.+.|+|++..+.........++.|.|.+++.+|+|.|+|.|.|..|...
T Consensus 1 p~~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~ 80 (88)
T cd04968 1 PSIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEISMSGAVLKIPNIQFEDEGTYECEAENIKGKDT 80 (88)
T ss_pred CCcEEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEEEeCCEEEECCCCcccCEEEEEEEEECCCcEE
Confidence 45667778899999999999999999999999999999877655433334678999999999999999999999999999
Q ss_pred EEEEEEEe
Q psy574 179 ASATLTVQ 186 (977)
Q Consensus 179 ~~~~L~V~ 186 (977)
..++|.|+
T Consensus 81 ~~~~l~V~ 88 (88)
T cd04968 81 HQGRIYVQ 88 (88)
T ss_pred EEEEEEEC
Confidence 99998874
No 26
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.41 E-value=1.3e-12 Score=113.32 Aligned_cols=86 Identities=22% Similarity=0.508 Sum_probs=73.0
Q ss_pred cceecccceEEeCCCcEEEEEECCCCCCCCeEEEEe-CCEEeecCCCceEEEecCc---EEEEcCCCCCCCeEEEEEEEe
Q psy574 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKK-NGHPIDFENSKRLRLVDGT---NLAIQDSRKTDDGRYQCVVKN 82 (977)
Q Consensus 7 ~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k-~g~~l~~~~~~r~~~~~~g---~L~I~~v~~~D~G~Y~C~a~n 82 (977)
++.+.|.++.+.+|+++.|.|.+ .|.|. .+.|+| +|+.+.. ..|+.+..++ .|.|.+++.+|+|.|+|.|.|
T Consensus 2 ~~~~~~~~~~v~~G~~v~l~C~~-~G~P~-~v~W~k~~g~~~~~--~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N 77 (92)
T cd05866 2 QVSISLSKVELSVGESKFFTCTA-IGEPE-SIDWYNPQGEKIVS--SQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATD 77 (92)
T ss_pred eEEEEecceEEcCCCeEEEEEEE-EEeCC-eEEEEeCCCeEecC--CCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEc
Confidence 46788999999999999999999 88998 899998 5777732 3577776555 799999999999999999999
Q ss_pred cCceeeeEeEEEEE
Q psy574 83 VAGTRESTDAVLRV 96 (977)
Q Consensus 83 ~~g~~~s~~~~l~V 96 (977)
..|......+.|.|
T Consensus 78 ~~G~~~~~~i~l~~ 91 (92)
T cd05866 78 AKGQTQEATVVLEI 91 (92)
T ss_pred CCCcEEEEEEEEEE
Confidence 99987777777765
No 27
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.41 E-value=1.4e-12 Score=114.49 Aligned_cols=88 Identities=22% Similarity=0.515 Sum_probs=69.6
Q ss_pred cceecccceEEeCCCcEEEEEECCCCCCC-CeEEEEe-CCEEeecCCCceEEEecC----cEEEEcCCCCCCCeEEEEEE
Q psy574 7 EFRVQPKSQRVAAGDTALLECGPPRGHPE-PTLVWKK-NGHPIDFENSKRLRLVDG----TNLAIQDSRKTDDGRYQCVV 80 (977)
Q Consensus 7 ~~~~~p~~~~v~~G~~v~L~C~~~~g~P~-~~v~W~k-~g~~l~~~~~~r~~~~~~----g~L~I~~v~~~D~G~Y~C~a 80 (977)
++.+.|.+..+.+|++++|.|.+ .|.|. |.|+|+| ||+.+.. ...|+.+..+ ++|.|.+++.+|+|.|+|.|
T Consensus 2 ~~~~~p~~~~v~~G~~v~l~C~v-~G~P~~p~i~W~~~~g~~l~~-~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A 79 (96)
T cd05865 2 QVDIVPSQGEISVGESKFFLCQV-AGEAKDKDISWFSPNGEKLTP-NQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVV 79 (96)
T ss_pred cEEEeCCccEECCCCeEEEEEEE-eCCCCCCEEEEECCCCcCccc-cCCeEEEEeCCCCceEEEEeccChhhCEEEEEEE
Confidence 35678989999999999999999 88885 7999998 8877733 2346554432 57999999999999999999
Q ss_pred EecCceeeeEeEEEEE
Q psy574 81 KNVAGTRESTDAVLRV 96 (977)
Q Consensus 81 ~n~~g~~~s~~~~l~V 96 (977)
.|..|......+.|.|
T Consensus 80 ~N~~~g~~~~s~~l~v 95 (96)
T cd05865 80 SNEDEGESEATVNVKI 95 (96)
T ss_pred EcCCCCcEEEEEEEEE
Confidence 9997433445667665
No 28
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.41 E-value=2.2e-12 Score=112.74 Aligned_cols=87 Identities=33% Similarity=0.609 Sum_probs=72.9
Q ss_pred ccceecccceEEeCCC---cEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCC-CCCCeEEEEEEE
Q psy574 6 EEFRVQPKSQRVAAGD---TALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSR-KTDDGRYQCVVK 81 (977)
Q Consensus 6 ~~~~~~p~~~~v~~G~---~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~-~~D~G~Y~C~a~ 81 (977)
|.|..+|.++.+.++. .++|.|.+ .|.|.|.|.|+||+..+... ..++.+. ++.|.|.++. .+|+|.|+|.|.
T Consensus 2 P~f~~~P~~~~~~~~~~~~~v~l~C~a-~G~P~P~i~W~k~~~~i~~~-~~~~~~~-~g~L~I~~~~~~~D~G~Y~C~A~ 78 (93)
T cd05849 2 PVFEEQPIDTIYPEESTEGKVSVNCRA-RANPFPIYKWRKNNLDIDLT-NDRYSMV-GGNLVINNPDKYKDAGRYVCIVS 78 (93)
T ss_pred CEEEECCCCEEecCCccCCeEEEeCcC-ccCCCCEEEEEECCEEccCC-CCeEEEE-CCEEEECcCCcCCCCEEEEEEEE
Confidence 6788899988776655 89999999 89999999999999988432 3466554 7899999985 699999999999
Q ss_pred ecCceeeeEeEEEE
Q psy574 82 NVAGTRESTDAVLR 95 (977)
Q Consensus 82 n~~g~~~s~~~~l~ 95 (977)
|..|...++.+.|.
T Consensus 79 N~~G~~~s~~a~l~ 92 (93)
T cd05849 79 NIYGKVRSREATLS 92 (93)
T ss_pred eCcceEEEccEEEe
Confidence 99999888777664
No 29
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.41 E-value=1.2e-12 Score=108.54 Aligned_cols=73 Identities=32% Similarity=0.681 Sum_probs=63.1
Q ss_pred CCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecCceeeeEeEEEEE
Q psy574 20 GDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRV 96 (977)
Q Consensus 20 G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V 96 (977)
|++++|.|.+ .|.|.|.|.|+|+++.+. ...|+.+..+++|.|.+++.+|+|.|+|.|.|..|... ..+.|+|
T Consensus 1 G~~~~l~C~~-~g~P~p~v~W~k~~~~l~--~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~-~~~~l~~ 73 (73)
T cd05852 1 GGRVIIECKP-KAAPKPKFSWSKGTELLV--NNSRISIWDDGSLEILNITKLDEGSYTCFAENNRGKAN-STGVLSV 73 (73)
T ss_pred CCeEEEEEec-ceeCCCEEEEEeCCEecc--cCCCEEEcCCCEEEECcCChhHCEEEEEEEECCCCcee-EEEEEEC
Confidence 7899999999 899999999999999873 34688888889999999999999999999999999755 3455553
No 30
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.41 E-value=1.5e-12 Score=112.18 Aligned_cols=84 Identities=29% Similarity=0.500 Sum_probs=74.7
Q ss_pred EEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceEEeccceEEEccCccCCCeEEEEEEEeCCeeEEEEE
Q psy574 102 IIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASA 181 (977)
Q Consensus 102 ~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~ 181 (977)
|...|.+..+.+|+++.|.|.+.|.|.|.+.|+|++..+.........++.|.|.++..+|+|.|+|.|.|..|...+++
T Consensus 2 ~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~ 81 (85)
T cd05728 2 WLKVISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEVEAGDLRITKLSLSDSGMYQCVAENKHGTIYASA 81 (85)
T ss_pred ccccCCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEEeCCEEEEeeCCHHHCEEEEEEEECCCCeEEEEE
Confidence 56678899999999999999999999999999999999876433334678999999999999999999999999999998
Q ss_pred EEEE
Q psy574 182 TLTV 185 (977)
Q Consensus 182 ~L~V 185 (977)
.|.|
T Consensus 82 ~l~V 85 (85)
T cd05728 82 ELAV 85 (85)
T ss_pred EEEC
Confidence 8875
No 31
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.38 E-value=2.8e-12 Score=110.55 Aligned_cols=85 Identities=32% Similarity=0.549 Sum_probs=72.2
Q ss_pred cceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecCce
Q psy574 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGT 86 (977)
Q Consensus 7 ~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g~ 86 (977)
+|...|.++.+.+|++++|.|.+ .|.|.|.+.|+|||..+.. ..++... ++.|.|.+++.+|+|.|+|.|.|..|.
T Consensus 1 ~~~~~p~~~~~~~G~~~~l~C~~-~g~p~p~v~W~k~g~~~~~--~~~~~~~-~~~L~i~~~~~~D~G~Y~C~a~N~~G~ 76 (85)
T cd05728 1 EWLKVISDTEADIGSSLRWECKA-SGNPRPAYRWLKNGQPLAS--ENRIEVE-AGDLRITKLSLSDSGMYQCVAENKHGT 76 (85)
T ss_pred CccccCCccEEcCCCcEEEEEEe-eEeCCCEEEEEECCEECCC--CCeEEEe-CCEEEEeeCCHHHCEEEEEEEECCCCe
Confidence 47788999999999999999999 8999999999999999843 3466654 779999999999999999999999997
Q ss_pred eeeEeEEEEE
Q psy574 87 RESTDAVLRV 96 (977)
Q Consensus 87 ~~s~~~~l~V 96 (977)
.. ..+.|.|
T Consensus 77 ~~-~~~~l~V 85 (85)
T cd05728 77 IY-ASAELAV 85 (85)
T ss_pred EE-EEEEEEC
Confidence 43 4455543
No 32
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.38 E-value=1.7e-12 Score=108.58 Aligned_cols=74 Identities=36% Similarity=0.686 Sum_probs=65.9
Q ss_pred EEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecCceeeeEeEEEEEE
Q psy574 23 ALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVL 97 (977)
Q Consensus 23 v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V~ 97 (977)
++|.|.+ .|.|.|.|.|+||+..+......|+....+|.|.|.+++.+|+|.|+|.|.|..|...+..+.|.|.
T Consensus 1 a~l~C~~-~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v~ 74 (74)
T cd05738 1 ATMLCAA-SGNPDPEITWFKDFLPVDTTSNGRIKQLRSGALQIENSEESDQGKYECVATNSAGTRYSAPANLYVR 74 (74)
T ss_pred CEEEEEE-eEecCCEEEEEECCEECccCCCCCEEEcCCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEEC
Confidence 5799999 8999999999999999865556788888888999999999999999999999999888888888773
No 33
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.37 E-value=2.6e-12 Score=106.58 Aligned_cols=72 Identities=25% Similarity=0.478 Sum_probs=65.2
Q ss_pred CCeEEEEEEecccCceEEEEEECCeeCC-CCceEEeccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy574 114 SSIIVFECSVGGDAVLTVHWKRLGSAMP-EDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTV 185 (977)
Q Consensus 114 G~~v~l~C~v~g~p~~~i~W~k~~~~l~-~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V 185 (977)
|+++.|.|.+.|.|.|.|.|+|++..+. ..++.+..+++|.|.+++.+|+|.|+|.|.|..|..+..+.|+|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~ 73 (73)
T cd05852 1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWDDGSLEILNITKLDEGSYTCFAENNRGKANSTGVLSV 73 (73)
T ss_pred CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEEcCCCEEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence 7889999999999999999999998764 45677778889999999999999999999999999999998875
No 34
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.37 E-value=2.7e-12 Score=107.45 Aligned_cols=73 Identities=37% Similarity=0.592 Sum_probs=65.5
Q ss_pred CCCeEEEEEEecccCceEEEEEECCeeCCCC-ceEEeccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy574 113 ASSIIVFECSVGGDAVLTVHWKRLGSAMPED-RMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTV 185 (977)
Q Consensus 113 ~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~-~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V 185 (977)
+|+++.|.|.+.|.|.|.|.|+|++..+... +..+..+++|.|.+++.+|+|.|+|.|.|..|..+..+.|.|
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 74 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLSSGTLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV 74 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEEccCCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence 6899999999999999999999999988654 444556789999999999999999999999999999988875
No 35
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.37 E-value=2.6e-12 Score=107.49 Aligned_cols=74 Identities=30% Similarity=0.627 Sum_probs=62.7
Q ss_pred CCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecCceeeeEeEEEEE
Q psy574 19 AGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRV 96 (977)
Q Consensus 19 ~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V 96 (977)
+|+++.|.|.+ .|.|.|.|.|+|+|..+... .++.+..+++|.|.+++.+|+|.|+|.|.|..|... ..+.|.|
T Consensus 1 eG~~v~l~C~~-~g~P~p~i~W~k~g~~~~~~--~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~-~~~~L~V 74 (74)
T cd05745 1 EGQTVDFLCEA-QGYPQPVIAWTKGGSQLSVD--RRHLVLSSGTLRISRVALHDQGQYECQAVNIVGSQR-TVAQLTV 74 (74)
T ss_pred CCCeEEEEeEC-CEecCCEEEEEECCEECCCC--CCeEEccCCeEEEeeCCHHhCEEEEEEEEeCCCcee-EEEEEeC
Confidence 69999999999 89999999999999988533 355566678999999999999999999999999754 4456554
No 36
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.36 E-value=5e-12 Score=110.93 Aligned_cols=82 Identities=29% Similarity=0.609 Sum_probs=70.9
Q ss_pred ccccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEec---CcEEEEcCCCCCCCeEEEEEE
Q psy574 4 LREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD---GTNLAIQDSRKTDDGRYQCVV 80 (977)
Q Consensus 4 l~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~---~g~L~I~~v~~~D~G~Y~C~a 80 (977)
+.+.|...|.++.+.+|+++.|.|.+ .++|.+.+.|+|+|..+... .|+.+.. .+.|.|.+++.+|+|.|+|.|
T Consensus 2 ~~~~~~~~p~~~~~~~G~~~~L~C~~-~g~P~p~v~W~k~g~~l~~~--~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a 78 (92)
T cd05747 2 LPATILTKPRSLTVSEGESARFSCDV-DGEPAPTVTWMREGQIIVSS--QRHQITSTEYKSTFEISKVQMSDEGNYTVVV 78 (92)
T ss_pred CCCcccccCccEEEeCCCcEEEEEEE-eecCCCEEEEEECCEECCCC--CcEEEEEcCCeeEEEECCCCcccCEeEEEEE
Confidence 56889999999999999999999999 89999999999999988433 3555443 358999999999999999999
Q ss_pred EecCceee
Q psy574 81 KNVAGTRE 88 (977)
Q Consensus 81 ~n~~g~~~ 88 (977)
.|..|...
T Consensus 79 ~N~~G~~~ 86 (92)
T cd05747 79 ENSEGKQE 86 (92)
T ss_pred EcCCCCEe
Confidence 99998743
No 37
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.35 E-value=6.3e-12 Score=109.33 Aligned_cols=81 Identities=25% Similarity=0.443 Sum_probs=69.6
Q ss_pred cccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEec-CcEEEEcCCCCCCCeEEEEEEEecCceeee
Q psy574 11 QPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD-GTNLAIQDSRKTDDGRYQCVVKNVAGTRES 89 (977)
Q Consensus 11 ~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~-~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~s 89 (977)
.++.+.+.+|++++|.|.+ .|. .|.|.|+||+..+.. .|+.+.. ++.|.|.+++.+|+|.|+|.|.|..|...+
T Consensus 9 ~~~~~~v~~g~~v~l~C~a-~g~-~p~i~W~kng~~l~~---~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S 83 (91)
T cd05740 9 SVGNQPPEDNQPVTLTCEA-EGQ-ATYIWWVNNGSLLVP---PRLQLSNDNRTLTFNNVTRSDTGHYQCEASNEVSNMTS 83 (91)
T ss_pred ccCccccccCCcEEEEEEe-CCC-CCEEEEEECCEECCC---CCEEEeCCCCEEEECcCChhhCEEEEEEEEcCCCCEEe
Confidence 3456799999999999999 788 899999999998842 3455553 468999999999999999999999999888
Q ss_pred EeEEEEE
Q psy574 90 TDAVLRV 96 (977)
Q Consensus 90 ~~~~l~V 96 (977)
..+.|.|
T Consensus 84 ~~~~L~V 90 (91)
T cd05740 84 DPYILNV 90 (91)
T ss_pred eeEEEEe
Confidence 8888887
No 38
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.35 E-value=5.8e-12 Score=112.84 Aligned_cols=90 Identities=31% Similarity=0.581 Sum_probs=72.2
Q ss_pred ccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecC---CCceEEEecCcEEEEc-----CCCCCCCeEEE
Q psy574 6 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFE---NSKRLRLVDGTNLAIQ-----DSRKTDDGRYQ 77 (977)
Q Consensus 6 ~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~---~~~r~~~~~~g~L~I~-----~v~~~D~G~Y~ 77 (977)
|.|...|.++.+.+|++++|.|.+ .|.|.|.|.|+|||+.+... ...+..+..++.+.+. .++.+|+|.|+
T Consensus 2 P~i~~~p~~~~v~~G~~~~l~C~~-~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~ 80 (100)
T cd07693 2 PRIVEHPSDLIVSKGDPATLNCKA-EGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYV 80 (100)
T ss_pred CeEEecCceeEEcCCCeEEEEeeC-CcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEE
Confidence 678899999999999999999999 89999999999999998541 1223333445543322 34789999999
Q ss_pred EEEEecCceeeeEeEEEEE
Q psy574 78 CVVKNVAGTRESTDAVLRV 96 (977)
Q Consensus 78 C~a~n~~g~~~s~~~~l~V 96 (977)
|.|.|..|...+..+.|.|
T Consensus 81 C~a~N~~G~~~s~~~~l~v 99 (100)
T cd07693 81 CVAHNSLGEAVSRNASLEV 99 (100)
T ss_pred EEEEccccceecceEEEEe
Confidence 9999999987888888876
No 39
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.35 E-value=5.4e-12 Score=110.65 Aligned_cols=85 Identities=27% Similarity=0.520 Sum_probs=67.4
Q ss_pred eecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecC--cEEEEcCCCCCCCeEEEEEEEecCce
Q psy574 9 RVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG--TNLAIQDSRKTDDGRYQCVVKNVAGT 86 (977)
Q Consensus 9 ~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~--g~L~I~~v~~~D~G~Y~C~a~n~~g~ 86 (977)
.--|..+.+.+|+++.|.|.+ .|.|.|.|.|+|+|+.+......++....+ .+|.|.+++.+|+|.|+|.|.|..|.
T Consensus 5 ~~lp~~v~v~~G~~v~L~C~v-~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~ 83 (92)
T cd05737 5 GGLPDVVTIMEGKTLNLTCTV-FGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGG 83 (92)
T ss_pred ccCCceEEEeCCCcEEEEEEE-EecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCc
Confidence 345777899999999999999 899999999999999995444334433322 36999999999999999999999987
Q ss_pred eeeEeEEEE
Q psy574 87 RESTDAVLR 95 (977)
Q Consensus 87 ~~s~~~~l~ 95 (977)
.. ..+.|.
T Consensus 84 ~~-~~~~v~ 91 (92)
T cd05737 84 ET-VDVTVS 91 (92)
T ss_pred ce-EEEEEe
Confidence 44 334443
No 40
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.35 E-value=4.9e-12 Score=107.23 Aligned_cols=79 Identities=25% Similarity=0.459 Sum_probs=64.3
Q ss_pred CcEEEEEECCC-CCCCCeEEEEeCCEEeec-CCCceEEE----ecCcEEEEcCCCCCCCeEEEEEEEecCceeeeEeEEE
Q psy574 21 DTALLECGPPR-GHPEPTLVWKKNGHPIDF-ENSKRLRL----VDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVL 94 (977)
Q Consensus 21 ~~v~L~C~~~~-g~P~~~v~W~k~g~~l~~-~~~~r~~~----~~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~~~l 94 (977)
+++.|.|.+.. +.+.+.|.|+|||+.|.. ....++.. ..++.|+|.+++..|+|.|+|.|.|..+.. +..+.|
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~-~a~a~L 79 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKL-SAAADL 79 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCce-EEEEEE
Confidence 57899999832 356789999999999964 33446655 246789999999999999999999998874 567899
Q ss_pred EEEcCC
Q psy574 95 RVLVKP 100 (977)
Q Consensus 95 ~V~~~P 100 (977)
.|..||
T Consensus 80 ~V~~pP 85 (85)
T cd05853 80 IVRGPP 85 (85)
T ss_pred EEecCC
Confidence 999887
No 41
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.34 E-value=4.3e-12 Score=105.62 Aligned_cols=71 Identities=31% Similarity=0.563 Sum_probs=58.4
Q ss_pred EEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEec--Cc--EEEEcCCCCCCCeEEEEEEEecCceeeeEeEEEEE
Q psy574 23 ALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD--GT--NLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRV 96 (977)
Q Consensus 23 v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~--~g--~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V 96 (977)
|.|+|.+ .|.|.|.|.|+|||+.|..+ ..|+.+.. +| +|.|.+++.+|+|.|+|.|.|..|... ..+.|.|
T Consensus 1 v~l~C~v-~G~P~P~i~W~k~~~~i~~~-~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~-~~a~L~V 75 (75)
T cd05892 1 VKLECQI-SAIPPPKIFWKRNNEMVQYN-TDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVAT-CHARLDV 75 (75)
T ss_pred CEEEEEE-EecCCCeEEEEECCEECcCC-CCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEE-EEEEEeC
Confidence 5799999 99999999999999999533 34777643 33 799999999999999999999999865 4466654
No 42
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.34 E-value=8.6e-12 Score=109.43 Aligned_cols=87 Identities=32% Similarity=0.550 Sum_probs=75.7
Q ss_pred cCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCC-CceEEec---cceEEEccCccCCCeEEEEEEEeC
Q psy574 98 VKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPE-DRMSVLP---SRSLQLSDVRLEDAGEYVCEAENA 173 (977)
Q Consensus 98 ~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~-~~~~~~~---~~~L~I~~v~~~D~G~Y~C~a~n~ 173 (977)
.+|.++..|.+..+.+|+++.|.|.+.|.|.+.+.|+|++..+.. .++.+.. .++|.|.++..+|+|.|+|.|.|.
T Consensus 2 ~~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~ 81 (92)
T cd05747 2 LPATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVENS 81 (92)
T ss_pred CCCcccccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEcC
Confidence 368888999999999999999999999999999999999988764 3555442 358999999999999999999999
Q ss_pred CeeEEEEEEEE
Q psy574 174 VGKISASATLT 184 (977)
Q Consensus 174 ~g~~~~~~~L~ 184 (977)
.|..+..+.|+
T Consensus 82 ~G~~~~~~~l~ 92 (92)
T cd05747 82 EGKQEAQFTLT 92 (92)
T ss_pred CCCEeEEEEeC
Confidence 99988877763
No 43
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.34 E-value=9e-12 Score=107.25 Aligned_cols=80 Identities=24% Similarity=0.468 Sum_probs=66.3
Q ss_pred ceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEec---CcEEEEcCCCCCCCeEEEEEEEecCceeeeE
Q psy574 14 SQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD---GTNLAIQDSRKTDDGRYQCVVKNVAGTREST 90 (977)
Q Consensus 14 ~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~---~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~ 90 (977)
.+.+.+|+++.|.|.+ .|.|.|.+.|+|+++.+... ..|+.+.. .+.|.|.+++.+|+|.|+|.|.|..|.. +.
T Consensus 4 ~~~v~~G~~v~l~c~~-~G~P~P~v~W~k~~~~i~~~-~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~-~~ 80 (86)
T cd05894 4 TIVVVAGNKLRLDVPI-SGEPAPTVTWSRGDKAFTET-EGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGED-HA 80 (86)
T ss_pred EEEEEcCCEEEEEeeE-eecCCCeEEEEECCEECccC-CCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcE-EE
Confidence 5789999999999999 89999999999999999532 34666553 3579999999999999999999999974 34
Q ss_pred eEEEEE
Q psy574 91 DAVLRV 96 (977)
Q Consensus 91 ~~~l~V 96 (977)
.+.|.|
T Consensus 81 ~~~l~V 86 (86)
T cd05894 81 SLFVKV 86 (86)
T ss_pred EEEEEC
Confidence 455543
No 44
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.34 E-value=7.6e-12 Score=105.07 Aligned_cols=75 Identities=29% Similarity=0.601 Sum_probs=61.4
Q ss_pred CCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecCceeeeEeEEEEE
Q psy574 20 GDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRV 96 (977)
Q Consensus 20 G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V 96 (977)
|++++|.|.+ .|.|.|.|.|+|||+.+......+....+++.|.|.+++.+|+|.|+|.|.|..|... ..+.|.|
T Consensus 1 g~~~~l~C~a-~G~P~P~i~W~k~g~~i~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~-~~~~l~v 75 (76)
T cd05868 1 GEDGTLICRA-NGNPKPSISWLTNGVPIEIAPTDPSRKVDGDTIIFSKVQERSSAVYQCNASNEYGYLL-ANAFVNV 75 (76)
T ss_pred CCCEEEEEEe-eEeCCCeEEEEECCEEccccCCCceEEecCCEEEECCCCHhhCEEEEEEEEcCCCEEE-EEEEEEe
Confidence 7899999999 8999999999999999854332233334456899999999999999999999999855 4566665
No 45
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.33 E-value=7.5e-12 Score=110.74 Aligned_cols=81 Identities=16% Similarity=0.271 Sum_probs=65.8
Q ss_pred ceEEeCCCcEEEEEECCCC-CCCCeEEEEeCCEEeecCCCceEEEec-------CcEEEEcCCCCCCCeEEEEEEEecCc
Q psy574 14 SQRVAAGDTALLECGPPRG-HPEPTLVWKKNGHPIDFENSKRLRLVD-------GTNLAIQDSRKTDDGRYQCVVKNVAG 85 (977)
Q Consensus 14 ~~~v~~G~~v~L~C~~~~g-~P~~~v~W~k~g~~l~~~~~~r~~~~~-------~g~L~I~~v~~~D~G~Y~C~a~n~~g 85 (977)
.+.+.+|+++.|.|.+ .| .|.|.|.|+|||+.|... ...+.... .+.|.|..++++|+|.|+|+|.|..|
T Consensus 12 ~~~v~~G~~v~L~c~v-~g~~P~p~v~W~Kdg~~i~~~-~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G 89 (101)
T cd04975 12 TIFVNLGENLNLVVEV-EAYPPPPHINWTYDNRTLTNK-LTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDA 89 (101)
T ss_pred eEEEECCCCEEEEEEE-EecCCCCccEEEeCCeeCCCC-cceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCc
Confidence 5889999999999999 78 899999999999999532 22222222 36799999999999999999999999
Q ss_pred eeeeEeEEEEEE
Q psy574 86 TRESTDAVLRVL 97 (977)
Q Consensus 86 ~~~s~~~~l~V~ 97 (977)
.. +..+.|.|.
T Consensus 90 ~~-~~t~~L~V~ 100 (101)
T cd04975 90 SK-SLTFELYVN 100 (101)
T ss_pred cE-EEEEEEEEE
Confidence 74 456777765
No 46
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.33 E-value=9e-12 Score=104.86 Aligned_cols=74 Identities=32% Similarity=0.623 Sum_probs=61.5
Q ss_pred CCcEEEEEECCCCCCCCeEEEEeCCEEeecCC-CceEEEecCcEEEEcCCCCCCCeEEEEEEEecCceeeeEeEEEEE
Q psy574 20 GDTALLECGPPRGHPEPTLVWKKNGHPIDFEN-SKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRV 96 (977)
Q Consensus 20 G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~-~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V 96 (977)
|++++|.|.+ .|.|.|.|+|+|||+.+.... ..++.+ .++.|.|.+++.+|+|.|+|.|.|..|... ..+.|.|
T Consensus 1 G~~v~l~C~~-~G~P~p~i~W~k~g~~i~~~~~~~~~~~-~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~-~~~~l~V 75 (76)
T cd05867 1 GETARLDCQV-EGIPTPNITWSINGAPIEGTDPDPRRHV-SSGALILTDVQPSDTAVYQCEARNRHGNLL-ANAHVHV 75 (76)
T ss_pred CCeEEEEEEe-eEeCCCeEEEEECCEECCCCCCCceEEe-eCCEEEECCCChhhCEEEEEEEECCCCeEE-EEEEEEE
Confidence 7899999999 899999999999999985433 235544 478899999999999999999999999854 4566665
No 47
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.32 E-value=5.7e-12 Score=105.04 Aligned_cols=71 Identities=35% Similarity=0.581 Sum_probs=59.1
Q ss_pred EEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCc----EEEEcCCCCCCCeEEEEEEEecCceeeeEeEEEEE
Q psy574 23 ALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGT----NLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRV 96 (977)
Q Consensus 23 v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g----~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V 96 (977)
|+|+|.+ .|.|.|.|.|+|++..+.. ...|+.+..++ .|.|.+++.+|+|.|+|.|.|..|... ..+.|.|
T Consensus 1 v~l~C~v-~G~P~P~v~W~k~~~~l~~-~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~-~~a~L~V 75 (75)
T cd05893 1 VRLECRV-SGVPHPQIFWKKENESLTH-NTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVS-CTARLDV 75 (75)
T ss_pred CEEEEEE-eEecCCEEEEEECCEECCC-CCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEE-EEEEEeC
Confidence 5799999 9999999999999999943 34577775443 699999999999999999999999865 4566654
No 48
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.32 E-value=7.6e-12 Score=104.12 Aligned_cols=69 Identities=29% Similarity=0.485 Sum_probs=59.8
Q ss_pred EEEEEEecccCceEEEEEECCeeCCC--CceEEecc--c--eEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy574 117 IVFECSVGGDAVLTVHWKRLGSAMPE--DRMSVLPS--R--SLQLSDVRLEDAGEYVCEAENAVGKISASATLTV 185 (977)
Q Consensus 117 v~l~C~v~g~p~~~i~W~k~~~~l~~--~~~~~~~~--~--~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V 185 (977)
+.|.|.+.|.|.|.|.|+|++..+.. +++.+..+ + +|.|.++..+|+|.|+|.|.|..|..+..+.|.|
T Consensus 1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05892 1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV 75 (75)
T ss_pred CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence 47999999999999999999998863 45555432 2 7999999999999999999999999999999876
No 49
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.32 E-value=1.1e-11 Score=107.91 Aligned_cols=86 Identities=26% Similarity=0.506 Sum_probs=71.2
Q ss_pred ccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecCc
Q psy574 6 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAG 85 (977)
Q Consensus 6 ~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g 85 (977)
+.+...|.++.+.+|++++|.|.+ .|.|.|.+.|+|++..+.... +.. ..++.|.|.+++.+|+|.|+|.|.|..|
T Consensus 2 ~~~~~~p~~~~~~~g~~v~l~C~~-~g~P~p~v~W~k~~~~~~~~~--~~~-~~~~~L~i~~v~~~D~G~Y~C~a~N~~G 77 (88)
T cd04968 2 SIIVVFPKDTYALKGQNVTLECFA-LGNPVPQIKWRKVDGSMPSSA--EIS-MSGAVLKIPNIQFEDEGTYECEAENIKG 77 (88)
T ss_pred CcEEECCCceEEeCCCcEEEEEEe-eEeCCCEEEEEECCCcCCCcc--EEE-EeCCEEEECCCCcccCEEEEEEEEECCC
Confidence 356678889999999999999999 899999999999888764332 233 3578999999999999999999999999
Q ss_pred eeeeEeEEEEE
Q psy574 86 TRESTDAVLRV 96 (977)
Q Consensus 86 ~~~s~~~~l~V 96 (977)
.. ...+.|.|
T Consensus 78 ~~-~~~~~l~V 87 (88)
T cd04968 78 KD-THQGRIYV 87 (88)
T ss_pred cE-EEEEEEEE
Confidence 74 45567766
No 50
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.31 E-value=1.8e-11 Score=105.44 Aligned_cols=78 Identities=28% Similarity=0.401 Sum_probs=68.1
Q ss_pred ceEEeCCCeEEEEEEecccCceEEEEEECCeeCCC--CceEEe---ccceEEEccCccCCCeEEEEEEEeCCeeEEEEEE
Q psy574 108 DTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPE--DRMSVL---PSRSLQLSDVRLEDAGEYVCEAENAVGKISASAT 182 (977)
Q Consensus 108 ~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~--~~~~~~---~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~ 182 (977)
.+.+.+|+.+.|.|.+.|.|.|.+.|+|++..+.. .++.+. ..+.|.|.++..+|+|.|+|.|.|..|..++.+.
T Consensus 4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~ 83 (86)
T cd05894 4 TIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASLF 83 (86)
T ss_pred EEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEEE
Confidence 45788999999999999999999999999998864 355544 2367999999999999999999999999988888
Q ss_pred EEE
Q psy574 183 LTV 185 (977)
Q Consensus 183 L~V 185 (977)
|.|
T Consensus 84 l~V 86 (86)
T cd05894 84 VKV 86 (86)
T ss_pred EEC
Confidence 875
No 51
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.31 E-value=1.5e-11 Score=103.53 Aligned_cols=72 Identities=28% Similarity=0.468 Sum_probs=63.2
Q ss_pred CCeEEEEEEecccCceEEEEEECCeeCCCC---ceEEeccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy574 114 SSIIVFECSVGGDAVLTVHWKRLGSAMPED---RMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTV 185 (977)
Q Consensus 114 G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~---~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V 185 (977)
|+++.|.|.+.|.|.|.++|+|++..+... ......++.|.|.+++.+|+|.|+|.|.|..|...+.+.|.|
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 75 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHVSSGALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV 75 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEeeCCEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence 789999999999999999999999987542 122336688999999999999999999999999999999887
No 52
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.31 E-value=1.5e-11 Score=107.80 Aligned_cols=89 Identities=31% Similarity=0.629 Sum_probs=74.2
Q ss_pred ccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEec-CcEEEEcCCCCCCCeEEEEEEEecC
Q psy574 6 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD-GTNLAIQDSRKTDDGRYQCVVKNVA 84 (977)
Q Consensus 6 ~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~-~g~L~I~~v~~~D~G~Y~C~a~n~~ 84 (977)
|+|...|.++.+.+|++++|.|.+ .+.|.+.+.|+++|..+..+...++.... ...|.|.+++.+|+|.|+|.|.|..
T Consensus 1 P~~~~~~~~~~v~~G~~~~l~c~~-~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~ 79 (90)
T PF07679_consen 1 PVFTKKPKDVTVKEGESVTLECEV-SGNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSS 79 (90)
T ss_dssp EEEEEESSEEEEETTSEEEEEEEE-EESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETT
T ss_pred CEEEEecCCEEEeCCCEEEEEEEE-EeCCCCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECC
Confidence 678899999999999999999999 78899999999999999765544444443 3579999999999999999999997
Q ss_pred ceeeeEeEEEEE
Q psy574 85 GTRESTDAVLRV 96 (977)
Q Consensus 85 g~~~s~~~~l~V 96 (977)
|... ..+.|.|
T Consensus 80 g~~~-~~~~l~V 90 (90)
T PF07679_consen 80 GEAT-ASVNLTV 90 (90)
T ss_dssp EEEE-EEEEEEE
T ss_pred CEEE-EEEEEEC
Confidence 7643 4456654
No 53
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.31 E-value=7.7e-12 Score=105.62 Aligned_cols=79 Identities=24% Similarity=0.508 Sum_probs=66.3
Q ss_pred ceecccceEEeCCCcEEEEEECCCCCCCC-eEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecCce
Q psy574 8 FRVQPKSQRVAAGDTALLECGPPRGHPEP-TLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGT 86 (977)
Q Consensus 8 ~~~~p~~~~v~~G~~v~L~C~~~~g~P~~-~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g~ 86 (977)
|..+|.++.+.+|+++.|.|.+ .|.|.| .|.|+|||..+.. +... ..+.|.|.++ .|.|.|+|+|.|..|.
T Consensus 1 f~~~P~~~~v~~G~~v~l~C~a-~G~P~P~~I~W~k~g~~l~~----~~~~-~~s~L~i~~~--~d~g~Y~C~A~N~~G~ 72 (81)
T cd05749 1 FTVEPEDLSVTANTPFNLTCQA-VGPPEPVEILWWQGGSPLGD----PPAP-SPSVLNVPGL--NETSKFSCEAHNAKGV 72 (81)
T ss_pred CcCCCCceEEcCCCCEEEEEEe-eeecCCeEEEEEECCEECCC----CCCC-CCCEEEEccc--cCCeEEEEEEEeccCc
Confidence 6778999999999999999999 999999 7999999999843 1112 2567999887 4789999999999998
Q ss_pred eeeEeEEE
Q psy574 87 RESTDAVL 94 (977)
Q Consensus 87 ~~s~~~~l 94 (977)
..+..+.|
T Consensus 73 ~~s~~a~~ 80 (81)
T cd05749 73 TTSRTGTV 80 (81)
T ss_pred EEeeeEEe
Confidence 87776665
No 54
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.31 E-value=1.4e-11 Score=103.54 Aligned_cols=73 Identities=19% Similarity=0.322 Sum_probs=63.4
Q ss_pred CCeEEEEEEecccCceEEEEEECCeeCCCC---ceEEeccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEEe
Q psy574 114 SSIIVFECSVGGDAVLTVHWKRLGSAMPED---RMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQ 186 (977)
Q Consensus 114 G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~---~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~ 186 (977)
|+++.|.|.+.|+|.|.|.|+|++.++... ......++.|.|.+++.+|+|.|+|.|.|..|...+++.|.|.
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~ 76 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKVDGDTIIFSKVQERSSAVYQCNASNEYGYLLANAFVNVL 76 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEecCCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEeC
Confidence 688999999999999999999999988532 2233355689999999999999999999999999999999874
No 55
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.31 E-value=9.6e-12 Score=103.68 Aligned_cols=69 Identities=32% Similarity=0.550 Sum_probs=60.0
Q ss_pred EEEEEEecccCceEEEEEECCeeCCC--CceEEeccc----eEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy574 117 IVFECSVGGDAVLTVHWKRLGSAMPE--DRMSVLPSR----SLQLSDVRLEDAGEYVCEAENAVGKISASATLTV 185 (977)
Q Consensus 117 v~l~C~v~g~p~~~i~W~k~~~~l~~--~~~~~~~~~----~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V 185 (977)
+.|.|.+.|.|.|.|.|+|++..+.. .++.+..+. .|.|.++..+|+|.|+|.|.|..|..+..+.|.|
T Consensus 1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV 75 (75)
T ss_pred CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence 57999999999999999999998864 355554332 6999999999999999999999999999999876
No 56
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.30 E-value=1.4e-11 Score=108.98 Aligned_cols=80 Identities=18% Similarity=0.196 Sum_probs=68.8
Q ss_pred CceEEeCCCeEEEEEEecc-cCceEEEEEECCeeCCCCce-EEe-c-------cceEEEccCccCCCeEEEEEEEeCCee
Q psy574 107 KDTTVSASSIIVFECSVGG-DAVLTVHWKRLGSAMPEDRM-SVL-P-------SRSLQLSDVRLEDAGEYVCEAENAVGK 176 (977)
Q Consensus 107 ~~~~v~~G~~v~l~C~v~g-~p~~~i~W~k~~~~l~~~~~-~~~-~-------~~~L~I~~v~~~D~G~Y~C~a~n~~g~ 176 (977)
..+.+.+|+++.|.|.+.| .|.|.+.|+|||.++..... .+. . ...|.|.++..+|+|.|+|.|.|..|.
T Consensus 11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~ 90 (101)
T cd04975 11 TTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDAS 90 (101)
T ss_pred ceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCcc
Confidence 4568899999999999999 89999999999999975332 222 2 367999999999999999999999999
Q ss_pred EEEEEEEEEe
Q psy574 177 ISASATLTVQ 186 (977)
Q Consensus 177 ~~~~~~L~V~ 186 (977)
.+..+.|.|.
T Consensus 91 ~~~t~~L~V~ 100 (101)
T cd04975 91 KSLTFELYVN 100 (101)
T ss_pred EEEEEEEEEE
Confidence 9999999885
No 57
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.30 E-value=6.3e-12 Score=108.40 Aligned_cols=81 Identities=28% Similarity=0.521 Sum_probs=65.5
Q ss_pred ccceecccc-eEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeec-CCCceEEEecCcEEEEcCCCCCCCeEEEEEEEec
Q psy574 6 EEFRVQPKS-QRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDF-ENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNV 83 (977)
Q Consensus 6 ~~~~~~p~~-~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~-~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~ 83 (977)
+.|..++.+ +.+.+|+.+.|.|..+.+.|.+.|.|+||+..+.. ++..++....+|+|.|.+++++|+|.|+|.|+|.
T Consensus 3 ~~f~~~~~~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n~ 82 (96)
T cd05727 3 DEFPLEERDEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQTNGNLYIAKVEASDRGNYSCFVSSP 82 (96)
T ss_pred cccCcCCcCceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeCCCCcEEEeecCHhhCceeEEEEEec
Confidence 456665544 67999999999999999999999999999886533 2333454445899999999999999999999997
Q ss_pred Cce
Q psy574 84 AGT 86 (977)
Q Consensus 84 ~g~ 86 (977)
...
T Consensus 83 ~~~ 85 (96)
T cd05727 83 SST 85 (96)
T ss_pred ccC
Confidence 643
No 58
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.30 E-value=1.9e-11 Score=107.18 Aligned_cols=84 Identities=26% Similarity=0.474 Sum_probs=68.5
Q ss_pred EeCCCceEEeCCCeEEEEEEecccCc-eEEEEEE-CCeeCCC-C-ceEEec----cceEEEccCccCCCeEEEEEEEeCC
Q psy574 103 IRGPKDTTVSASSIIVFECSVGGDAV-LTVHWKR-LGSAMPE-D-RMSVLP----SRSLQLSDVRLEDAGEYVCEAENAV 174 (977)
Q Consensus 103 ~~~p~~~~v~~G~~v~l~C~v~g~p~-~~i~W~k-~~~~l~~-~-~~~~~~----~~~L~I~~v~~~D~G~Y~C~a~n~~ 174 (977)
...|.+..+.+|+++.|.|.+.|.|. |.+.|++ ++..+.. + ++.+.. .++|.|.+++.+|+|.|+|.|.|..
T Consensus 4 ~~~p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~ 83 (96)
T cd05865 4 DIVPSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNED 83 (96)
T ss_pred EEeCCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCC
Confidence 45577778999999999999999985 7999998 6665543 2 444432 2589999999999999999999997
Q ss_pred -eeEEEEEEEEEe
Q psy574 175 -GKISASATLTVQ 186 (977)
Q Consensus 175 -g~~~~~~~L~V~ 186 (977)
|..++++.|.|.
T Consensus 84 ~g~~~~s~~l~v~ 96 (96)
T cd05865 84 EGESEATVNVKIF 96 (96)
T ss_pred CCcEEEEEEEEEC
Confidence 888899988873
No 59
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.30 E-value=1e-11 Score=102.32 Aligned_cols=69 Identities=49% Similarity=0.889 Sum_probs=63.7
Q ss_pred EEEEEEecccCceEEEEEECCeeCCCCceEEeccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy574 117 IVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTV 185 (977)
Q Consensus 117 v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V 185 (977)
++|.|.+.|.|.|.+.|+|++..++..++.+..++.|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 69 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRKEDGELPKGRAEILDDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV 69 (69)
T ss_pred CEEEEECccCCCCEEEEEECCccCCCCcEEEeeCCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence 479999999999999999999988888888878889999999999999999999999999988888875
No 60
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.30 E-value=2.1e-11 Score=106.80 Aligned_cols=86 Identities=38% Similarity=0.653 Sum_probs=76.5
Q ss_pred CeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCC-CceEEe---ccceEEEccCccCCCeEEEEEEEeCCe
Q psy574 100 PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPE-DRMSVL---PSRSLQLSDVRLEDAGEYVCEAENAVG 175 (977)
Q Consensus 100 P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~-~~~~~~---~~~~L~I~~v~~~D~G~Y~C~a~n~~g 175 (977)
|.|...+.+..+.+|+++.|.|.+.|.|.+.+.|++++..+.. .++.+. ....|.|.++..+|+|.|+|.|.|..|
T Consensus 1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g 80 (90)
T PF07679_consen 1 PVFTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSG 80 (90)
T ss_dssp EEEEEESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTE
T ss_pred CEEEEecCCEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECCC
Confidence 6788889999999999999999999999999999999998865 344443 456899999999999999999999999
Q ss_pred eEEEEEEEEE
Q psy574 176 KISASATLTV 185 (977)
Q Consensus 176 ~~~~~~~L~V 185 (977)
..+..+.|.|
T Consensus 81 ~~~~~~~l~V 90 (90)
T PF07679_consen 81 EATASVNLTV 90 (90)
T ss_dssp EEEEEEEEEE
T ss_pred EEEEEEEEEC
Confidence 9999998876
No 61
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.29 E-value=1.9e-11 Score=101.29 Aligned_cols=70 Identities=36% Similarity=0.621 Sum_probs=62.3
Q ss_pred eEEEEEEecccCceEEEEEECCeeCCC-CceEEeccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy574 116 IIVFECSVGGDAVLTVHWKRLGSAMPE-DRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTV 185 (977)
Q Consensus 116 ~v~l~C~v~g~p~~~i~W~k~~~~l~~-~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V 185 (977)
++.|.|.+.|.|.|.++|+|++..+.. .++.+..++.|.|.+++.+|+|.|+|.|.|..|..++.+.|.|
T Consensus 1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 71 (71)
T cd05723 1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEHNLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII 71 (71)
T ss_pred CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEEEecCCEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence 478999999999999999999988754 4566667788999999999999999999999999999998875
No 62
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.29 E-value=3e-11 Score=106.79 Aligned_cols=84 Identities=29% Similarity=0.658 Sum_probs=69.8
Q ss_pred ccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecC-cEEEEcCCCCCCCeEEEEEEEecCceeeeE
Q psy574 12 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG-TNLAIQDSRKTDDGRYQCVVKNVAGTREST 90 (977)
Q Consensus 12 p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~-g~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~ 90 (977)
+.++.+..|++++|.|.+ .|.|.+.|.|+|+|..+... ..++.+..+ +.|.|.+++.+|+|.|+|.|.|..|.. ..
T Consensus 10 ~~~~~~~~G~~v~L~C~~-~g~P~p~v~W~k~g~~~~~~-~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~ 86 (95)
T cd05730 10 EVNATANLGQSVTLACDA-DGFPEPTMTWTKDGEPIESG-EEKYSFNEDGSEMTILDVDKLDEAEYTCIAENKAGEQ-EA 86 (95)
T ss_pred ccceEEeCCCCEEEEEec-cEeCCCEEEEEECCEECcCC-CCEEEEeCCCCEEEECCCChhhCEEEEEEEEcCCCeE-EE
Confidence 345689999999999999 89999999999999998543 346665544 469999999999999999999999975 45
Q ss_pred eEEEEEEc
Q psy574 91 DAVLRVLV 98 (977)
Q Consensus 91 ~~~l~V~~ 98 (977)
.+.|.|..
T Consensus 87 ~~~L~V~~ 94 (95)
T cd05730 87 EIHLKVFA 94 (95)
T ss_pred EEEEEEEe
Confidence 67777764
No 63
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.29 E-value=2e-11 Score=105.70 Aligned_cols=79 Identities=23% Similarity=0.363 Sum_probs=65.4
Q ss_pred CCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEec----C---cEEEEcCCCCCCCeEEEEEEEecCceeeeEeE
Q psy574 20 GDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD----G---TNLAIQDSRKTDDGRYQCVVKNVAGTRESTDA 92 (977)
Q Consensus 20 G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~----~---g~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~~ 92 (977)
|+.++|.|.+ .|.|.+.+.|+|+++.+... ..|+.+.. + ++|.|.+++.+|+|.|+|.|.|..|... ..+
T Consensus 1 g~~~~l~C~~-~g~p~~~i~W~k~~~~i~~~-~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~-~~~ 77 (88)
T cd05735 1 GQKKEMSCTA-HGEKPIIVRWEKEDRIINPE-MSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDR-GII 77 (88)
T ss_pred CCeEEEEEEE-ECCCCCEEEEeeCCEECCCC-CCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcce-EEE
Confidence 8999999999 88999999999999988543 34655432 1 4699999999999999999999999854 668
Q ss_pred EEEEEcCCe
Q psy574 93 VLRVLVKPY 101 (977)
Q Consensus 93 ~l~V~~~P~ 101 (977)
.|.|..+|.
T Consensus 78 ~L~V~~~P~ 86 (88)
T cd05735 78 QLTVQEPPD 86 (88)
T ss_pred EEEEeCCCC
Confidence 899987763
No 64
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.28 E-value=2.6e-11 Score=105.91 Aligned_cols=83 Identities=29% Similarity=0.489 Sum_probs=70.6
Q ss_pred EeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceEE----eccceEEEccCccCCCeEEEEEEEeCCeeEE
Q psy574 103 IRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSV----LPSRSLQLSDVRLEDAGEYVCEAENAVGKIS 178 (977)
Q Consensus 103 ~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~----~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~ 178 (977)
...|.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+...+... .....|.|.++..+|.|.|+|.|.|..|...
T Consensus 4 v~~p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~ 83 (90)
T cd04972 4 VDGPNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQAN 83 (90)
T ss_pred ccCCcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCcee
Confidence 456677789999999999999999999999999999876543211 1345899999999999999999999999999
Q ss_pred EEEEEEE
Q psy574 179 ASATLTV 185 (977)
Q Consensus 179 ~~~~L~V 185 (977)
+.+.|.|
T Consensus 84 ~~~~L~v 90 (90)
T cd04972 84 VSVQVTV 90 (90)
T ss_pred EEEEEeC
Confidence 9888875
No 65
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.28 E-value=3.5e-11 Score=106.69 Aligned_cols=87 Identities=30% Similarity=0.528 Sum_probs=71.4
Q ss_pred CCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCC------CceEEec---cceEEEccCccCCCeEEEEE
Q psy574 99 KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPE------DRMSVLP---SRSLQLSDVRLEDAGEYVCE 169 (977)
Q Consensus 99 ~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~------~~~~~~~---~~~L~I~~v~~~D~G~Y~C~ 169 (977)
+|.+...+....+..|+.+.|.|.+.|.|.|.++|++++..+.. +++.+.. .+.|.|.+++.+|+|.|+|.
T Consensus 2 ~p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~ 81 (97)
T cd05869 2 KPKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCT 81 (97)
T ss_pred CceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEE
Confidence 46777777666666789999999999999999999999877643 2233322 25799999999999999999
Q ss_pred EEeCCeeEEEEEEEEE
Q psy574 170 AENAVGKISASATLTV 185 (977)
Q Consensus 170 a~n~~g~~~~~~~L~V 185 (977)
|.|..|..++.+.|.|
T Consensus 82 A~N~~G~~~~~~~l~v 97 (97)
T cd05869 82 ASNTIGQDSQSMYLEV 97 (97)
T ss_pred EecCCCCeeEEEEEEC
Confidence 9999999999988875
No 66
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.28 E-value=1.8e-11 Score=98.91 Aligned_cols=66 Identities=20% Similarity=0.288 Sum_probs=57.1
Q ss_pred EEEEEEecccCceEEEEEECCeeCCCCceEEeccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEEe
Q psy574 117 IVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQ 186 (977)
Q Consensus 117 v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~ 186 (977)
+.|.|.+.|.|.|.+.|+|||..+... ...+.|.|.++..+|+|.|+|.|+|..|..++.+.|++.
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~----~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l~ 66 (67)
T cd05863 1 VKLPVKVAAYPPPEFQWYKDGKLISGK----HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLELI 66 (67)
T ss_pred CEEEEEEEEeCCCEEEEEECCEECccc----CCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEEE
Confidence 479999999999999999999988632 145689999999999999999999999987777776653
No 67
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.27 E-value=3e-11 Score=103.73 Aligned_cols=78 Identities=26% Similarity=0.509 Sum_probs=62.1
Q ss_pred CcEEEEEECCCCCCCC--eEEEEeCCEEeecCC-CceEE---Ee-cCcEEEEcCCCCCCCeEEEEEEEecCceeeeEeEE
Q psy574 21 DTALLECGPPRGHPEP--TLVWKKNGHPIDFEN-SKRLR---LV-DGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAV 93 (977)
Q Consensus 21 ~~v~L~C~~~~g~P~~--~v~W~k~g~~l~~~~-~~r~~---~~-~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~~~ 93 (977)
++++|.|.+ .|.|.| .|.|+|||+.|.... ..++. .. ..++|.|.+++.+|+|.|+|.|.|..|.. +..+.
T Consensus 1 ~~~~L~C~a-~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~-~~~~~ 78 (85)
T cd05854 1 ENLTLQCHA-SHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSA-SASAT 78 (85)
T ss_pred CcEEEEEEE-ecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCE-EEEEE
Confidence 579999999 888877 689999999985432 33332 22 35789999999999999999999999875 46789
Q ss_pred EEEEcCC
Q psy574 94 LRVLVKP 100 (977)
Q Consensus 94 l~V~~~P 100 (977)
|.|..+|
T Consensus 79 L~V~~~P 85 (85)
T cd05854 79 LVVRGPP 85 (85)
T ss_pred EEEECCC
Confidence 9998776
No 68
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.27 E-value=3.5e-11 Score=104.66 Aligned_cols=80 Identities=25% Similarity=0.467 Sum_probs=69.4
Q ss_pred CCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceEEe-ccceEEEccCccCCCeEEEEEEEeCCee-EEEEEE
Q psy574 105 GPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVL-PSRSLQLSDVRLEDAGEYVCEAENAVGK-ISASAT 182 (977)
Q Consensus 105 ~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~-~~~~L~I~~v~~~D~G~Y~C~a~n~~g~-~~~~~~ 182 (977)
.+.++.+.+|++++|.|.+.|. .|.|.|+|++..+...+..+. .+++|.|.+++.+|+|.|+|.|.|..|. .+..+.
T Consensus 9 ~~~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~~ 87 (91)
T cd05740 9 SVGNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPPRLQLSNDNRTLTFNNVTRSDTGHYQCEASNEVSNMTSDPYI 87 (91)
T ss_pred ccCccccccCCcEEEEEEeCCC-CCEEEEEECCEECCCCCEEEeCCCCEEEECcCChhhCEEEEEEEEcCCCCEEeeeEE
Confidence 3557789999999999999999 999999999999887776654 4468999999999999999999999997 455777
Q ss_pred EEE
Q psy574 183 LTV 185 (977)
Q Consensus 183 L~V 185 (977)
|.|
T Consensus 88 L~V 90 (91)
T cd05740 88 LNV 90 (91)
T ss_pred EEe
Confidence 776
No 69
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.27 E-value=2.1e-11 Score=103.30 Aligned_cols=75 Identities=31% Similarity=0.554 Sum_probs=63.9
Q ss_pred CeEEEEEEeccc--CceEEEEEECCeeCCC----CceEEe----ccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEE
Q psy574 115 SIIVFECSVGGD--AVLTVHWKRLGSAMPE----DRMSVL----PSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLT 184 (977)
Q Consensus 115 ~~v~l~C~v~g~--p~~~i~W~k~~~~l~~----~~~~~~----~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~ 184 (977)
+++.|.|.+.++ +.+.|.|+|||..|.. .++... .++.|.|.+++..|+|.|+|.|.|..+..++.+.|.
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~ 80 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLI 80 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEE
Confidence 468999999764 5789999999999962 244442 456899999999999999999999999999999999
Q ss_pred EeeCC
Q psy574 185 VQMAP 189 (977)
Q Consensus 185 V~~~p 189 (977)
|..||
T Consensus 81 V~~pP 85 (85)
T cd05853 81 VRGPP 85 (85)
T ss_pred EecCC
Confidence 99887
No 70
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.27 E-value=2.2e-11 Score=101.67 Aligned_cols=73 Identities=30% Similarity=0.662 Sum_probs=62.3
Q ss_pred CCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecCceeeeEeEEEEE
Q psy574 20 GDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRV 96 (977)
Q Consensus 20 G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V 96 (977)
|+.+.|.|.+ .|.|.+.+.|+|++..+.. ..++.+..+++|.|.+++.+|+|.|+|.|.|..|... ..+.|.|
T Consensus 1 G~~v~L~C~~-~g~P~p~v~W~k~~~~~~~--~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~-~~~~l~V 73 (73)
T cd04969 1 GGDVIIECKP-KAAPKPTISWSKGTELLTN--SSRICIWPDGSLEILNVTKSDEGKYTCFAENFFGKAN-STGSLSV 73 (73)
T ss_pred CCeEEEEEee-eEcCCCEEEEEECCEEccc--CCCEEECCCCeEEEccCChhHCEEEEEEEECCCCceE-EEEEEEC
Confidence 7899999998 8999999999999998843 4577777788999999999999999999999998754 4455543
No 71
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.27 E-value=3.3e-11 Score=105.64 Aligned_cols=81 Identities=27% Similarity=0.388 Sum_probs=69.0
Q ss_pred CCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCC-CceEEe-c---cceEEEccCccCCCeEEEEEEEeCCeeEEE
Q psy574 105 GPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPE-DRMSVL-P---SRSLQLSDVRLEDAGEYVCEAENAVGKISA 179 (977)
Q Consensus 105 ~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~-~~~~~~-~---~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~ 179 (977)
.|....+.+|+++.|.|.+.|.|.|.+.|+|++..+.. .++.+. . ..+|.|.+++.+|+|.|+|.|.|..|..+.
T Consensus 7 lp~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~ 86 (92)
T cd05737 7 LPDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETV 86 (92)
T ss_pred CCceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcceE
Confidence 46677899999999999999999999999999998864 344443 1 247999999999999999999999999888
Q ss_pred EEEEEE
Q psy574 180 SATLTV 185 (977)
Q Consensus 180 ~~~L~V 185 (977)
.+.|.|
T Consensus 87 ~~~v~v 92 (92)
T cd05737 87 DVTVSV 92 (92)
T ss_pred EEEEeC
Confidence 887765
No 72
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.27 E-value=2.6e-11 Score=105.83 Aligned_cols=86 Identities=23% Similarity=0.376 Sum_probs=66.9
Q ss_pred eecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEE-ecCcEEEEcCCCCCCCeEEEEEEEecCcee
Q psy574 9 RVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRL-VDGTNLAIQDSRKTDDGRYQCVVKNVAGTR 87 (977)
Q Consensus 9 ~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~-~~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~ 87 (977)
...|.++.+.+|+.+.|.|.+ .|.|.|.|.|+|||..+.......... ...+.|.|.+++.+|.|.|+|.|.|..|..
T Consensus 4 v~~p~~~~v~~G~~v~l~C~~-~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~ 82 (90)
T cd04972 4 VDGPNATVVYEGGTATIRCTA-EGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQA 82 (90)
T ss_pred ccCCcCEEEcCCCcEEEEEEE-EEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCce
Confidence 446777889999999999999 899999999999999884322211111 223579999999999999999999999974
Q ss_pred eeEeEEEEE
Q psy574 88 ESTDAVLRV 96 (977)
Q Consensus 88 ~s~~~~l~V 96 (977)
. ..+.|.|
T Consensus 83 ~-~~~~L~v 90 (90)
T cd04972 83 N-VSVQVTV 90 (90)
T ss_pred e-EEEEEeC
Confidence 4 4455543
No 73
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.26 E-value=2.8e-11 Score=104.79 Aligned_cols=77 Identities=26% Similarity=0.406 Sum_probs=66.5
Q ss_pred CCeEEEEEEecccCceEEEEEECCeeCCC--CceEEec----c---ceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEE
Q psy574 114 SSIIVFECSVGGDAVLTVHWKRLGSAMPE--DRMSVLP----S---RSLQLSDVRLEDAGEYVCEAENAVGKISASATLT 184 (977)
Q Consensus 114 G~~v~l~C~v~g~p~~~i~W~k~~~~l~~--~~~~~~~----~---~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~ 184 (977)
|+.++|.|.+.|.|.+.+.|+|++..+.. .++.+.. + .+|.|.++..+|+|.|+|.|.|..|..+..+.|.
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~ 80 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLT 80 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEEE
Confidence 78999999999999999999999988854 3454431 1 5799999999999999999999999999999999
Q ss_pred EeeCCe
Q psy574 185 VQMAPI 190 (977)
Q Consensus 185 V~~~p~ 190 (977)
|..+|.
T Consensus 81 V~~~P~ 86 (88)
T cd05735 81 VQEPPD 86 (88)
T ss_pred EeCCCC
Confidence 997653
No 74
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.26 E-value=4.8e-11 Score=105.51 Aligned_cols=81 Identities=25% Similarity=0.407 Sum_probs=69.7
Q ss_pred CceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCC--ceEEe-ccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEE
Q psy574 107 KDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED--RMSVL-PSRSLQLSDVRLEDAGEYVCEAENAVGKISASATL 183 (977)
Q Consensus 107 ~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~--~~~~~-~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L 183 (977)
.+..+..|+++.|.|.+.|.|.+.+.|+|++..+... ++... ....|.|.+++.+|+|.|+|.|.|..|..+..+.|
T Consensus 11 ~~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L 90 (95)
T cd05730 11 VNATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNEDGSEMTILDVDKLDEAEYTCIAENKAGEQEAEIHL 90 (95)
T ss_pred cceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEEeCCCCEEEECCCChhhCEEEEEEEEcCCCeEEEEEEE
Confidence 4557899999999999999999999999999988653 33333 33579999999999999999999999999999999
Q ss_pred EEee
Q psy574 184 TVQM 187 (977)
Q Consensus 184 ~V~~ 187 (977)
.|..
T Consensus 91 ~V~~ 94 (95)
T cd05730 91 KVFA 94 (95)
T ss_pred EEEe
Confidence 8863
No 75
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.26 E-value=3.5e-11 Score=106.87 Aligned_cols=86 Identities=31% Similarity=0.622 Sum_probs=69.9
Q ss_pred CCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEEC--CeeCC------CCceEEec---cceEEEccCccCCCeEEE
Q psy574 99 KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRL--GSAMP------EDRMSVLP---SRSLQLSDVRLEDAGEYV 167 (977)
Q Consensus 99 ~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~--~~~l~------~~~~~~~~---~~~L~I~~v~~~D~G~Y~ 167 (977)
+|.+.. +.+..+.+|++++|.|.+.|.|.|.|.|+|+ +..+. ..++.+.. ..+|.|.+++.+|+|.|+
T Consensus 2 ~p~i~~-~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~ 80 (98)
T cd05870 2 QPHIIQ-LKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYD 80 (98)
T ss_pred CCEEEe-eccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEE
Confidence 466654 6788999999999999999999999999995 33332 23454432 358999999999999999
Q ss_pred EEEEeCCeeEEEEEEEEE
Q psy574 168 CEAENAVGKISASATLTV 185 (977)
Q Consensus 168 C~a~n~~g~~~~~~~L~V 185 (977)
|.|.|..|...+++.|.|
T Consensus 81 C~A~N~~G~~~~~~~l~~ 98 (98)
T cd05870 81 CEAASRIGGHQKSMYLDI 98 (98)
T ss_pred EEEeccCCcceeEEEEeC
Confidence 999999999888888875
No 76
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.26 E-value=2.5e-11 Score=100.51 Aligned_cols=71 Identities=34% Similarity=0.631 Sum_probs=59.5
Q ss_pred cEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecCceeeeEeEEEEE
Q psy574 22 TALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRV 96 (977)
Q Consensus 22 ~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V 96 (977)
+++|.|.+ .|.|.|.|+|+|+|..+.. ..++.+..++.|.|.+++.+|+|.|+|.|.|..|... ..+.|.|
T Consensus 1 ~v~l~C~~-~G~P~p~v~W~k~g~~~~~--~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~-~~~~L~V 71 (71)
T cd05723 1 DVIFECEV-TGKPTPTVKWVKNGDMVIP--SDYFKIVKEHNLQVLGLVKSDEGFYQCIAENDVGNVQ-ASAQLII 71 (71)
T ss_pred CEEEEEEE-EEeCCCEEEEEECCeECCC--CCCEEEEecCCEEEEcCCcccCEEEEEEEEcCCCEEE-EEEEEEC
Confidence 58999999 8999999999999998843 3466776778899999999999999999999999855 4455543
No 77
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.26 E-value=3.7e-11 Score=101.36 Aligned_cols=75 Identities=36% Similarity=0.659 Sum_probs=61.8
Q ss_pred CCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecCceeeeEeEEEEE
Q psy574 20 GDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRV 96 (977)
Q Consensus 20 G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V 96 (977)
|++++|.|.+ .|.|.|.|.|++||..+............++.|.|.+++.+|+|.|+|.|.|..|... ..+.|.|
T Consensus 1 G~~~~l~C~~-~g~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~-~~~~l~V 75 (76)
T cd04978 1 GETGRLDCEA-EGIPQPTITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLL-ANAFVHV 75 (76)
T ss_pred CCeEEEEEEc-eeeCCCEEEEEECCEECCCCCCcceEEccCCEEEECCCChhhCEEEEEEEEccCCeEE-EeEEEEE
Confidence 7899999999 8999999999999999854433323444578999999999999999999999998754 5566665
No 78
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.25 E-value=6e-11 Score=103.67 Aligned_cols=85 Identities=27% Similarity=0.472 Sum_probs=68.2
Q ss_pred CCeEEeCCCceEEeCCC---eEEEEEEecccCceEEEEEECCeeCCC--CceEEeccceEEEccCc-cCCCeEEEEEEEe
Q psy574 99 KPYIIRGPKDTTVSASS---IIVFECSVGGDAVLTVHWKRLGSAMPE--DRMSVLPSRSLQLSDVR-LEDAGEYVCEAEN 172 (977)
Q Consensus 99 ~P~~~~~p~~~~v~~G~---~v~l~C~v~g~p~~~i~W~k~~~~l~~--~~~~~~~~~~L~I~~v~-~~D~G~Y~C~a~n 172 (977)
.|.|...|.++.+.++. .+.|.|.+.|.|.|.|+|+|++..+.. .++ ...++.|.|.++. .+|+|.|+|.|.|
T Consensus 1 ~P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~-~~~~g~L~I~~~~~~~D~G~Y~C~A~N 79 (93)
T cd05849 1 GPVFEEQPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRY-SMVGGNLVINNPDKYKDAGRYVCIVSN 79 (93)
T ss_pred CCEEEECCCCEEecCCccCCeEEEeCcCccCCCCEEEEEECCEEccCCCCeE-EEECCEEEECcCCcCCCCEEEEEEEEe
Confidence 37788888887665544 899999999999999999999988753 343 3457899999985 6899999999999
Q ss_pred CCeeE-EEEEEEE
Q psy574 173 AVGKI-SASATLT 184 (977)
Q Consensus 173 ~~g~~-~~~~~L~ 184 (977)
..|.. +..+.|.
T Consensus 80 ~~G~~~s~~a~l~ 92 (93)
T cd05849 80 IYGKVRSREATLS 92 (93)
T ss_pred CcceEEEccEEEe
Confidence 99985 4455553
No 79
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.25 E-value=5e-11 Score=106.75 Aligned_cols=87 Identities=33% Similarity=0.564 Sum_probs=69.8
Q ss_pred CCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCC------CceEEeccceEEEc-----cCccCCCeEEE
Q psy574 99 KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPE------DRMSVLPSRSLQLS-----DVRLEDAGEYV 167 (977)
Q Consensus 99 ~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~------~~~~~~~~~~L~I~-----~v~~~D~G~Y~ 167 (977)
+|.+...|.+..+.+|+++.|.|.+.|.|.|.+.|+|++..+.. .+.....++.+.+. .+..+|+|.|+
T Consensus 1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~ 80 (100)
T cd07693 1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYV 80 (100)
T ss_pred CCeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEE
Confidence 57888999999999999999999999999999999999988764 12222344443322 23689999999
Q ss_pred EEEEeCCee-EEEEEEEEE
Q psy574 168 CEAENAVGK-ISASATLTV 185 (977)
Q Consensus 168 C~a~n~~g~-~~~~~~L~V 185 (977)
|.|.|..|. .+..+.|.|
T Consensus 81 C~a~N~~G~~~s~~~~l~v 99 (100)
T cd07693 81 CVAHNSLGEAVSRNASLEV 99 (100)
T ss_pred EEEEccccceecceEEEEe
Confidence 999999998 777888876
No 80
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.25 E-value=3.4e-11 Score=105.31 Aligned_cols=86 Identities=22% Similarity=0.568 Sum_probs=66.9
Q ss_pred cceecccceEEeCCCcEEEEEECCCCCCCCeEEEEe-CCEEeecCCCceEEEecC----cEEEEcCCCCCCCeEEEEEEE
Q psy574 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKK-NGHPIDFENSKRLRLVDG----TNLAIQDSRKTDDGRYQCVVK 81 (977)
Q Consensus 7 ~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k-~g~~l~~~~~~r~~~~~~----g~L~I~~v~~~D~G~Y~C~a~ 81 (977)
.+.+.|..+.+..|+++.|.|.+ .|.|. .+.|++ +++.+... .++.+..+ ++|+|.+++.+|+|.|+|.|.
T Consensus 2 ~v~v~p~~~~v~~G~~~~l~C~~-~G~p~-~i~W~~~~~~~~~~~--~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~ 77 (92)
T cd04977 2 QVDIVPSQGEISVGESKFFLCQV-IGEPK-DISWFSPNGEKLVTQ--QQISVVQNDDVRSTLTIYNANIEDAGIYKCVAT 77 (92)
T ss_pred eEEEecCcEEECCCCeEEEEEEe-EeeCC-eEEEECCCCCEeccC--CCEEEEeCCCCEEEEEEecCCcccCEEEEEEEE
Confidence 45788999999999999999999 77774 999998 67766432 23333322 379999999999999999999
Q ss_pred ecCceeeeEeEEEEE
Q psy574 82 NVAGTRESTDAVLRV 96 (977)
Q Consensus 82 n~~g~~~s~~~~l~V 96 (977)
|..|.....++.|.|
T Consensus 78 N~~g~~~~~sv~l~~ 92 (92)
T cd04977 78 DAKGTESEATVNLKI 92 (92)
T ss_pred cCCCCcceeEEEEEC
Confidence 987765556666553
No 81
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.25 E-value=3.5e-11 Score=103.81 Aligned_cols=78 Identities=28% Similarity=0.529 Sum_probs=62.1
Q ss_pred CcEEEEEECCCCCCCC--eEEEEeCCEEeecCCC-ceE----EEecCcEEEEcCCCCCCCeEEEEEEEecCceeeeEeEE
Q psy574 21 DTALLECGPPRGHPEP--TLVWKKNGHPIDFENS-KRL----RLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAV 93 (977)
Q Consensus 21 ~~v~L~C~~~~g~P~~--~v~W~k~g~~l~~~~~-~r~----~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~~~ 93 (977)
++++|.|.+ .+.|.+ .+.|+|||+.|..+.. .++ ....++.|.|.+++.+|+|.|+|.|.|..|.. +..+.
T Consensus 1 e~~~L~C~~-~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~-~~~~~ 78 (85)
T cd04970 1 ESITLQCHA-SHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSL-SASAD 78 (85)
T ss_pred CcEEEEEEE-ecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcE-EEEEE
Confidence 579999999 788877 6799999999854322 222 22246789999999999999999999998874 56789
Q ss_pred EEEEcCC
Q psy574 94 LRVLVKP 100 (977)
Q Consensus 94 l~V~~~P 100 (977)
|.|..+|
T Consensus 79 l~V~~pP 85 (85)
T cd04970 79 LIVRGPP 85 (85)
T ss_pred EEEECCC
Confidence 9998876
No 82
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.25 E-value=3.6e-11 Score=100.31 Aligned_cols=72 Identities=28% Similarity=0.561 Sum_probs=64.7
Q ss_pred CCeEEEEEEecccCceEEEEEECCeeCCC-CceEEeccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy574 114 SSIIVFECSVGGDAVLTVHWKRLGSAMPE-DRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTV 185 (977)
Q Consensus 114 G~~v~l~C~v~g~p~~~i~W~k~~~~l~~-~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V 185 (977)
|+++.|.|.+.|.|.+.+.|+|++..+.. .++.+..+++|.|.++..+|+|.|+|.|.|..|..+..+.|.|
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 73 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWPDGSLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV 73 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEECCCCeEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence 78899999999999999999999988754 4666667789999999999999999999999999999888875
No 83
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.25 E-value=4.3e-11 Score=100.95 Aligned_cols=73 Identities=26% Similarity=0.382 Sum_probs=64.1
Q ss_pred CCeEEEEEEecccCceEEEEEECCeeCCCCc---eEEeccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEEe
Q psy574 114 SSIIVFECSVGGDAVLTVHWKRLGSAMPEDR---MSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQ 186 (977)
Q Consensus 114 G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~---~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~ 186 (977)
|+++.|.|.+.|.|.|.|.|++++..+.... .....++.|.|.+++.+|+|.|+|.|.|..|...+.+.|.|.
T Consensus 1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V~ 76 (76)
T cd04978 1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHVV 76 (76)
T ss_pred CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcceEEccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEEC
Confidence 7899999999999999999999999886432 233467899999999999999999999999999999998873
No 84
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.25 E-value=4.1e-11 Score=106.25 Aligned_cols=81 Identities=12% Similarity=0.215 Sum_probs=65.5
Q ss_pred ceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEe--------cCcEEEEcCCCCCCCeEEEEEEEecCc
Q psy574 14 SQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV--------DGTNLAIQDSRKTDDGRYQCVVKNVAG 85 (977)
Q Consensus 14 ~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~--------~~g~L~I~~v~~~D~G~Y~C~a~n~~g 85 (977)
...+..|+.+.|.|.+ .|.|.|.|.|+|||++|.... ..+... ..++|.|.+++.+|+|.|+|.|.|..|
T Consensus 12 ~~~~~~~~~~~l~~~v-~g~P~P~v~W~kdg~~l~~~~-~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g 89 (101)
T cd05859 12 LEFANLHEVKEFVVEV-EAYPPPQIRWLKDNRTLIENL-TEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDA 89 (101)
T ss_pred eEEEecCCcEEEEEEE-EEeCCCceEEEECCEECcCCc-ceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCc
Confidence 5789999999999999 999999999999999995322 222211 125799999999999999999999998
Q ss_pred eeeeEeEEEEEE
Q psy574 86 TRESTDAVLRVL 97 (977)
Q Consensus 86 ~~~s~~~~l~V~ 97 (977)
... .++.|.|+
T Consensus 90 ~~~-~t~~l~V~ 100 (101)
T cd05859 90 VKS-YTFALQIQ 100 (101)
T ss_pred eEE-EEEEEEEE
Confidence 754 55677764
No 85
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.25 E-value=8.8e-11 Score=103.16 Aligned_cols=85 Identities=22% Similarity=0.377 Sum_probs=67.8
Q ss_pred CeEEeCCCceEEeCC---CeEEEEEEecccCceEEEEEECCeeCCCC--ceEEeccceEEEccCc-cCCCeEEEEEEEeC
Q psy574 100 PYIIRGPKDTTVSAS---SIIVFECSVGGDAVLTVHWKRLGSAMPED--RMSVLPSRSLQLSDVR-LEDAGEYVCEAENA 173 (977)
Q Consensus 100 P~~~~~p~~~~v~~G---~~v~l~C~v~g~p~~~i~W~k~~~~l~~~--~~~~~~~~~L~I~~v~-~~D~G~Y~C~a~n~ 173 (977)
|.|...|.++.+.+| +++.|.|.+.|+|.+.|+|++++..+... ......++.|.|.++. ..|+|.|+|.|.|.
T Consensus 2 P~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~ 81 (94)
T cd05850 2 PVFEEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLVAGNLVINNPQKARDAGSYQCLAINR 81 (94)
T ss_pred CeeEECCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEEECCeEEEccCCccCcCEEEEEEEEcC
Confidence 678888888877666 58999999999999999999999988632 2222356789998865 69999999999999
Q ss_pred CeeEE-EEEEEE
Q psy574 174 VGKIS-ASATLT 184 (977)
Q Consensus 174 ~g~~~-~~~~L~ 184 (977)
.|.+. ..+.|.
T Consensus 82 ~G~~~s~~a~l~ 93 (94)
T cd05850 82 CGTVVSREANLR 93 (94)
T ss_pred cCcEEEEEEEEe
Confidence 99854 455553
No 86
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.25 E-value=4.3e-11 Score=106.10 Aligned_cols=79 Identities=19% Similarity=0.205 Sum_probs=68.2
Q ss_pred ceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceEEe----------ccceEEEccCccCCCeEEEEEEEeCCeeE
Q psy574 108 DTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVL----------PSRSLQLSDVRLEDAGEYVCEAENAVGKI 177 (977)
Q Consensus 108 ~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~----------~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~ 177 (977)
...+..|+.+.|.|.+.|.|.|.+.|+|++.++..+...+. ...+|.|.++..+|+|.|+|.|.|..|..
T Consensus 12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~ 91 (101)
T cd05859 12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVK 91 (101)
T ss_pred eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceE
Confidence 55788999999999999999999999999999875432221 13579999999999999999999999999
Q ss_pred EEEEEEEEe
Q psy574 178 SASATLTVQ 186 (977)
Q Consensus 178 ~~~~~L~V~ 186 (977)
+.++.|.|.
T Consensus 92 ~~t~~l~V~ 100 (101)
T cd05859 92 SYTFALQIQ 100 (101)
T ss_pred EEEEEEEEE
Confidence 889888875
No 87
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.24 E-value=5.1e-11 Score=104.21 Aligned_cols=77 Identities=30% Similarity=0.578 Sum_probs=63.2
Q ss_pred cccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecC--cEEEEcCCCCCCCeEEEEEEEecCceee
Q psy574 11 QPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG--TNLAIQDSRKTDDGRYQCVVKNVAGTRE 88 (977)
Q Consensus 11 ~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~--g~L~I~~v~~~D~G~Y~C~a~n~~g~~~ 88 (977)
.|..+.+.+|+++.|.|.+ .+.|.+.+.|+|+|..+.......+.+..+ ++|.|.+++.+|+|.|+|.|.|..|...
T Consensus 7 ~p~~v~v~eG~~v~L~C~v-~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~ 85 (92)
T cd05891 7 LPDVVTIMEGKTLNLTCTV-FGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGET 85 (92)
T ss_pred CCCcEEEcCCCEEEEEEEE-EEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCcee
Confidence 5778999999999999998 789999999999999885443223333332 3799999999999999999999988743
No 88
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.24 E-value=4.8e-11 Score=104.20 Aligned_cols=78 Identities=32% Similarity=0.571 Sum_probs=65.5
Q ss_pred CCcEEEEEECCCCCCCCeEEEEeCCEEee------cCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecCceeeeEeEE
Q psy574 20 GDTALLECGPPRGHPEPTLVWKKNGHPID------FENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAV 93 (977)
Q Consensus 20 G~~v~L~C~~~~g~P~~~v~W~k~g~~l~------~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~~~ 93 (977)
|++++|.|.+ .|.|.|.|.|+|+|..+. .....|+.+..++.|.|.+++.+|+|.|+|.|.|..|... ..+.
T Consensus 1 G~~v~L~C~~-~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~-~~~~ 78 (90)
T cd05726 1 GRTVTFQCEA-TGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYYICQTLNVAGSIL-TKAY 78 (90)
T ss_pred CCEEEEEEEC-CccCCCEEEEEeCCCcceeecccCCCCCCeEEECCCCeEEEeeCChhhCEEEEEEEEcCCCceE-EEEE
Confidence 7899999999 899999999999986531 1235688887788999999999999999999999999754 5688
Q ss_pred EEEEcC
Q psy574 94 LRVLVK 99 (977)
Q Consensus 94 l~V~~~ 99 (977)
|.|...
T Consensus 79 l~V~~~ 84 (90)
T cd05726 79 LEVTDV 84 (90)
T ss_pred EEEeec
Confidence 888753
No 89
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.24 E-value=5.4e-11 Score=102.14 Aligned_cols=75 Identities=28% Similarity=0.472 Sum_probs=63.3
Q ss_pred CeEEEEEEecccCce--EEEEEECCeeCCCC----ceEEe----ccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEE
Q psy574 115 SIIVFECSVGGDAVL--TVHWKRLGSAMPED----RMSVL----PSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLT 184 (977)
Q Consensus 115 ~~v~l~C~v~g~p~~--~i~W~k~~~~l~~~----~~~~~----~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~ 184 (977)
+.++|.|.+.|+|.| .+.|+|++..+... ++... ..++|.|.+++..|+|.|+|.|.|..|..++.+.|.
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~ 80 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLV 80 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEE
Confidence 468999999999887 68999999887532 22211 347899999999999999999999999999999999
Q ss_pred EeeCC
Q psy574 185 VQMAP 189 (977)
Q Consensus 185 V~~~p 189 (977)
|..+|
T Consensus 81 V~~~P 85 (85)
T cd05854 81 VRGPP 85 (85)
T ss_pred EECCC
Confidence 99876
No 90
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.24 E-value=5.8e-11 Score=97.33 Aligned_cols=69 Identities=22% Similarity=0.467 Sum_probs=57.9
Q ss_pred CCeEEEEEEecccCceEEEEEECCeeCCCCceEEeccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEE
Q psy574 114 SSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLT 184 (977)
Q Consensus 114 G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~ 184 (977)
|+++.|.|.+.|.|.|.|.|+|++..+............|.|.++. |+|.|+|.|.|..|..++.+.|+
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~~~~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l~ 69 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPVGRNVLELTNIY--ESANYTCVAISSLGMIEATAQVT 69 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEECCEECCCccceecCccEEEEeccc--cCeeEEEEEEeCCCEEEEEEEEC
Confidence 6889999999999999999999998886544333345679999974 89999999999999988887763
No 91
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.24 E-value=4.5e-11 Score=98.80 Aligned_cols=70 Identities=24% Similarity=0.364 Sum_probs=60.9
Q ss_pred EEEEEEecccCceEEEEEECCeeCCCCceEEeccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEEe
Q psy574 117 IVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQ 186 (977)
Q Consensus 117 v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~ 186 (977)
+.|.|.+.|.|.|.+.|+|++..+...........+|.|.+++.+|+|.|+|.|.|..|..++.+.+.|.
T Consensus 1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~~ 70 (71)
T cd04976 1 VRLPVKVKAYPPPEIQWYKNGKLISEKNRTKKSGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTLV 70 (71)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCEEEcCCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEEE
Confidence 4699999999999999999999987665455567899999999999999999999999988777777653
No 92
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.23 E-value=4.8e-11 Score=104.17 Aligned_cols=75 Identities=28% Similarity=0.565 Sum_probs=65.5
Q ss_pred CCeEEEEEEecccCceEEEEEECCeeC---------CCCceEEeccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEE
Q psy574 114 SSIIVFECSVGGDAVLTVHWKRLGSAM---------PEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLT 184 (977)
Q Consensus 114 G~~v~l~C~v~g~p~~~i~W~k~~~~l---------~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~ 184 (977)
|+++.|.|.+.|.|.|.+.|+|++..+ ...++.+..++.|.|.+++.+|+|.|+|.|.|..|.....+.|.
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~ 80 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYYICQTLNVAGSILTKAYLE 80 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECCCCeEEEeeCChhhCEEEEEEEEcCCCceEEEEEEE
Confidence 789999999999999999999997643 23456666678999999999999999999999999999999999
Q ss_pred EeeC
Q psy574 185 VQMA 188 (977)
Q Consensus 185 V~~~ 188 (977)
|...
T Consensus 81 V~~~ 84 (90)
T cd05726 81 VTDV 84 (90)
T ss_pred Eeec
Confidence 9853
No 93
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.23 E-value=5.3e-11 Score=100.85 Aligned_cols=71 Identities=28% Similarity=0.553 Sum_probs=59.8
Q ss_pred ccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecCcee
Q psy574 12 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTR 87 (977)
Q Consensus 12 p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~ 87 (977)
|.+..+.+|+.++|.|.+ .+. .+.|.|+|||..|.. +.|+.+. ++.|.|.+++.+|+|.|+|.|.|..|..
T Consensus 1 ~~~~~~~~G~~v~l~C~~-~~~-~~~v~W~k~g~~l~~--~~~~~~~-~~~L~I~~~~~~DsG~Y~C~a~n~~g~~ 71 (79)
T cd04973 1 VESYSAHPGDLLQLRCRL-RDD-VQSINWTKDGVQLGE--NNRTRIT-GEEVQIKDAVPRDSGLYACVTSSPSGSD 71 (79)
T ss_pred CCcEEecCCCCEEEEEEe-cCC-CceEEEeeCCcCCCC--CceEEEe-CCEEEECCCChhhCEEEEEEEeCCCCcc
Confidence 677899999999999999 554 468999999999843 3466665 5689999999999999999999987763
No 94
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=99.23 E-value=1.7e-10 Score=109.95 Aligned_cols=123 Identities=20% Similarity=0.275 Sum_probs=89.3
Q ss_pred eEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEEecC-CC-CeEEEEEcCeee
Q psy574 152 SLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGS-PP-PSTFWMLEGNRS 229 (977)
Q Consensus 152 ~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g~-p~-~~i~W~~~g~~~ 229 (977)
+|.|.+++.+|+|.|+|.+.+..+.....+.|.|..+|.+...+.......|+.++|.|.+.|. |. ..|.|+++|...
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~ 81 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEPPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTREPPGD 81 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecCCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEEECCCCC
Confidence 6899999999999999999998888889999999999999888877666689999999999986 44 389999998542
Q ss_pred eec--CCCccccEEEEEccCCc----eEEEEeecccCCCCeEEEEEEEcCCC
Q psy574 230 LIY--PGDRVDNIQAEITSDGM----NLLKIQNVSRTAAPLIILCLGVNAAG 275 (977)
Q Consensus 230 ~~~--~~~~~~~~~~~~~~~g~----s~L~I~~v~~~d~G~Y~~C~a~n~~g 275 (977)
... .......-......+|. +.|.+..-..++...|+ |.+.+...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~yt-C~V~H~~l 132 (139)
T cd05771 82 SPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYT-CRVSHVSL 132 (139)
T ss_pred ccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEE-EEEEcCCC
Confidence 110 00000000111222232 36777666666678999 99987643
No 95
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.23 E-value=8.8e-11 Score=103.08 Aligned_cols=84 Identities=27% Similarity=0.567 Sum_probs=67.1
Q ss_pred CeEEeCCCceEEe---CCCeEEEEEEecccCceEEEEEECCeeCCCC-ceE-EeccceEEEccCc-cCCCeEEEEEEEeC
Q psy574 100 PYIIRGPKDTTVS---ASSIIVFECSVGGDAVLTVHWKRLGSAMPED-RMS-VLPSRSLQLSDVR-LEDAGEYVCEAENA 173 (977)
Q Consensus 100 P~~~~~p~~~~v~---~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~-~~~-~~~~~~L~I~~v~-~~D~G~Y~C~a~n~ 173 (977)
|.|+..|.++.+. +|+++.|.|.+.|.|.|.|+|+|++..+... ... ...++.|.|.++. .+|+|.|+|.|.|.
T Consensus 2 P~f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~~~g~L~i~~~~~~~D~G~Y~C~A~N~ 81 (94)
T cd05848 2 PVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLIDGNLIISNPSEVKDSGRYQCLATNS 81 (94)
T ss_pred CeeEECCCcEEccCCCCCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEeeCCeEEEccCCccCcCEEEEEEEEcC
Confidence 6788888887664 4789999999999999999999999988642 222 2356889999985 69999999999999
Q ss_pred CeeEE-EEEEE
Q psy574 174 VGKIS-ASATL 183 (977)
Q Consensus 174 ~g~~~-~~~~L 183 (977)
.|... ..+.|
T Consensus 82 ~G~~~S~~~~l 92 (94)
T cd05848 82 IGSILSREALL 92 (94)
T ss_pred CCeEEeccEEE
Confidence 99853 44443
No 96
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.23 E-value=5.8e-11 Score=100.60 Aligned_cols=78 Identities=19% Similarity=0.469 Sum_probs=65.5
Q ss_pred CCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCC-ceEEeccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEE
Q psy574 106 PKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED-RMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLT 184 (977)
Q Consensus 106 p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~-~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~ 184 (977)
|++..+.+|+.+.|.|.+.+. .+.+.|+|+|.++..+ ++.+ .+..|.|.+++.+|+|.|+|.|.|..|.....+.|+
T Consensus 1 ~~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~-~~~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~~v~ 78 (79)
T cd04973 1 VESYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRI-TGEEVQIKDAVPRDSGLYACVTSSPSGSDTTYFSVN 78 (79)
T ss_pred CCcEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEE-eCCEEEECCCChhhCEEEEEEEeCCCCcccEEEEEe
Confidence 566788999999999999886 5689999999988754 4444 467899999999999999999999988877777665
Q ss_pred E
Q psy574 185 V 185 (977)
Q Consensus 185 V 185 (977)
|
T Consensus 79 V 79 (79)
T cd04973 79 V 79 (79)
T ss_pred C
Confidence 4
No 97
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.22 E-value=5.1e-11 Score=98.67 Aligned_cols=69 Identities=38% Similarity=0.644 Sum_probs=60.4
Q ss_pred EEEEEEecccCceEEEEEECCeeCCCCceEE-eccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy574 117 IVFECSVGGDAVLTVHWKRLGSAMPEDRMSV-LPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTV 185 (977)
Q Consensus 117 v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V 185 (977)
+.|.|.+.|.|.|.+.|+|++..+...+... ..+++|.|.+++.+|+|.|+|.|.|..|..++.+.|.|
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRIDGPLSPNRTKKLNNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCcCCCCCceeEEcCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence 4699999999999999999998876554433 35679999999999999999999999999999888887
No 98
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.21 E-value=7.2e-11 Score=98.77 Aligned_cols=69 Identities=30% Similarity=0.490 Sum_probs=59.2
Q ss_pred EEEEEEecccCceEEEEEECCeeCCC--CceEEecc----ceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy574 117 IVFECSVGGDAVLTVHWKRLGSAMPE--DRMSVLPS----RSLQLSDVRLEDAGEYVCEAENAVGKISASATLTV 185 (977)
Q Consensus 117 v~l~C~v~g~p~~~i~W~k~~~~l~~--~~~~~~~~----~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V 185 (977)
+.|.|.+.|.|.|.|.|+|++..+.. .++.+..+ .+|.|.+++.+|+|.|+|.|.|..|..+..+.|.|
T Consensus 1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 75 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV 75 (75)
T ss_pred CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence 47999999999999999999998863 35554322 26999999999999999999999999999998875
No 99
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.21 E-value=9.2e-11 Score=103.63 Aligned_cols=84 Identities=33% Similarity=0.563 Sum_probs=70.5
Q ss_pred EEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCC---ceEEeccceEEEccC-----ccCCCeEEEEEEEeC
Q psy574 102 IIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED---RMSVLPSRSLQLSDV-----RLEDAGEYVCEAENA 173 (977)
Q Consensus 102 ~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~---~~~~~~~~~L~I~~v-----~~~D~G~Y~C~a~n~ 173 (977)
|...|.+..+.+|+++.|.|.+.|.|.+.|.|+|++..+... +..+..+++|.|.++ ..+|+|.|+|.|.|.
T Consensus 2 f~~~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~a~N~ 81 (95)
T cd05722 2 FLSEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVAQND 81 (95)
T ss_pred cEECCCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEccCCeEEEeeeeccCCCCCcCEEEEEEEECC
Confidence 566788889999999999999999999999999999988643 245556778888877 588999999999999
Q ss_pred -CeeE-EEEEEEEE
Q psy574 174 -VGKI-SASATLTV 185 (977)
Q Consensus 174 -~g~~-~~~~~L~V 185 (977)
.|.. +..+.|.|
T Consensus 82 ~~G~~~s~~~~l~v 95 (95)
T cd05722 82 SLGSIVSRTARLTV 95 (95)
T ss_pred ccCcEEEeeeEEeC
Confidence 8875 66777765
No 100
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.21 E-value=7.8e-11 Score=103.09 Aligned_cols=84 Identities=39% Similarity=0.663 Sum_probs=69.0
Q ss_pred ccceecccceEEeCC---CcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCC-CCCCeEEEEEEE
Q psy574 6 EEFRVQPKSQRVAAG---DTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSR-KTDDGRYQCVVK 81 (977)
Q Consensus 6 ~~~~~~p~~~~v~~G---~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~-~~D~G~Y~C~a~ 81 (977)
|.|..+|.++.+.+| ++++|.|.+ .|.|.+.|.|+|+++.+......++.+. ++.|.|.++. .+|+|.|+|+|.
T Consensus 2 P~f~~~p~~~~~~~~~~~~~~~l~C~~-~g~p~p~i~W~k~~~~l~~~~~~~~~~~-~~~L~i~~~~~~~d~G~Y~C~a~ 79 (91)
T cd04967 2 PVFEEQPDDTIFPEESDEGKVSLNCRA-RGSPPPTYRWLMNGTEIDDEPDSRYSLV-GGNLVISNPSKAKDAGRYQCLAS 79 (91)
T ss_pred CeeEeCCCCEEccCCCCCCEEEEEEee-eEcCCCEEEEEECCEECCCCCCCCEEEE-CCEEEEecCCccCCCEEEEEEEE
Confidence 678889998876655 579999999 8899999999999999854444556554 6789999887 499999999999
Q ss_pred ecCceeeeEe
Q psy574 82 NVAGTRESTD 91 (977)
Q Consensus 82 n~~g~~~s~~ 91 (977)
|..|...++.
T Consensus 80 N~~G~~~S~~ 89 (91)
T cd04967 80 NIVGTVLSRE 89 (91)
T ss_pred cCCCEEEecc
Confidence 9999876654
No 101
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.21 E-value=1e-10 Score=101.32 Aligned_cols=81 Identities=36% Similarity=0.637 Sum_probs=68.7
Q ss_pred CCCceEEeCCCeEEEEEEe-cccCceEEEEEECCeeCCC--CceEEeccceEEEccCccCCCeEEEEEEEeCCeeE-EEE
Q psy574 105 GPKDTTVSASSIIVFECSV-GGDAVLTVHWKRLGSAMPE--DRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKI-SAS 180 (977)
Q Consensus 105 ~p~~~~v~~G~~v~l~C~v-~g~p~~~i~W~k~~~~l~~--~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~-~~~ 180 (977)
.|.+..+.+|+++.|.|.+ .|.|.+.+.|+|++..+.. .++.+..++.|.|.+++.+|+|.|+|.|.|..|.. +..
T Consensus 2 ~p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~ 81 (86)
T cd05724 2 EPSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVDDGNLLIAEARKSDEGTYKCVATNMVGERESAA 81 (86)
T ss_pred CCccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEccCCEEEEeECCcccCEEEEEEEEeccCceeeee
Confidence 4678889999999999998 7899999999999988764 35555567899999999999999999999999874 556
Q ss_pred EEEEE
Q psy574 181 ATLTV 185 (977)
Q Consensus 181 ~~L~V 185 (977)
+.|.|
T Consensus 82 ~~l~V 86 (86)
T cd05724 82 ARLSV 86 (86)
T ss_pred EEEEC
Confidence 66654
No 102
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.21 E-value=1.1e-10 Score=101.40 Aligned_cols=82 Identities=24% Similarity=0.469 Sum_probs=67.0
Q ss_pred EeCCCceEEeCCCeEEEEEEecccCceEEEEEEC-CeeCC-CCceEEeccc---eEEEccCccCCCeEEEEEEEeCCeeE
Q psy574 103 IRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRL-GSAMP-EDRMSVLPSR---SLQLSDVRLEDAGEYVCEAENAVGKI 177 (977)
Q Consensus 103 ~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~-~~~l~-~~~~~~~~~~---~L~I~~v~~~D~G~Y~C~a~n~~g~~ 177 (977)
...|.+..+.+|+++.|.|.+.|.|. .+.|+++ +..+. ..++.+..++ .|.|.++..+|+|.|+|.|.|..|..
T Consensus 4 ~~~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~ 82 (92)
T cd05866 4 SISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQT 82 (92)
T ss_pred EEEecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcE
Confidence 44567788999999999999999998 8999985 55544 3466665444 89999999999999999999999874
Q ss_pred -EEEEEEEE
Q psy574 178 -SASATLTV 185 (977)
Q Consensus 178 -~~~~~L~V 185 (977)
.+.+.|.|
T Consensus 83 ~~~~i~l~~ 91 (92)
T cd05866 83 QEATVVLEI 91 (92)
T ss_pred EEEEEEEEE
Confidence 66777765
No 103
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.21 E-value=8.2e-11 Score=98.87 Aligned_cols=71 Identities=31% Similarity=0.619 Sum_probs=58.7
Q ss_pred EEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEe-cCcEEEEcCCCC----CCCeEEEEEEEecCceeeeEeEEE
Q psy574 23 ALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV-DGTNLAIQDSRK----TDDGRYQCVVKNVAGTRESTDAVL 94 (977)
Q Consensus 23 v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~-~~g~L~I~~v~~----~D~G~Y~C~a~n~~g~~~s~~~~l 94 (977)
+.|.|.+ .|.|.|.|+|+|||+.+....+.++.+. .+++|.|.++.. +|+|.|+|.|.|..|...+..+.|
T Consensus 1 ~~l~C~~-~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~~ 76 (77)
T cd05875 1 IIIECEA-KGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSNKILL 76 (77)
T ss_pred CEEEEec-cccCCCEEEEEECCEEccCcCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEEEEEE
Confidence 4799999 8999999999999998765556677664 578999998742 469999999999999888876654
No 104
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.21 E-value=7.8e-11 Score=99.26 Aligned_cols=73 Identities=26% Similarity=0.551 Sum_probs=58.3
Q ss_pred EEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEec-CcEEEEcCCCCCCCeEEEEEEEecCceee-eEeEEEEEE
Q psy574 23 ALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD-GTNLAIQDSRKTDDGRYQCVVKNVAGTRE-STDAVLRVL 97 (977)
Q Consensus 23 v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~-~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~~~l~V~ 97 (977)
|+|.|.+ .|.|.|.|.|+|||..+... ..++.+.. ++.|.|.+++++|+|.|+|.|.|..|... +..+.|.|.
T Consensus 1 v~L~C~~-~g~P~p~v~W~k~g~~l~~~-~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v~ 75 (77)
T cd05760 1 VTLRCHI-DGHPRPTYQWFRDGTPLSDG-QGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSII 75 (77)
T ss_pred CEEEEEe-eecCCCcEEEEECCEECCCC-CccEEEeCCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEEe
Confidence 5899999 89999999999999998443 33555443 46899999999999999999999999754 345566554
No 105
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.21 E-value=9.5e-11 Score=103.93 Aligned_cols=86 Identities=35% Similarity=0.553 Sum_probs=70.5
Q ss_pred CCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCC------CceEEe---ccceEEEccCccCCCeEEEEE
Q psy574 99 KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPE------DRMSVL---PSRSLQLSDVRLEDAGEYVCE 169 (977)
Q Consensus 99 ~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~------~~~~~~---~~~~L~I~~v~~~D~G~Y~C~ 169 (977)
+|.+. .+.+..+.+|+++.|.|.+.|.|.+.+.|++++..+.. +++.+. ....|.|.+++.+|+|.|+|.
T Consensus 2 ~P~i~-~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 80 (96)
T cd05732 2 QPKIT-YLENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCE 80 (96)
T ss_pred Cccce-ecCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEE
Confidence 45654 45678899999999999999999999999999866543 233332 235899999999999999999
Q ss_pred EEeCCeeEEEEEEEEE
Q psy574 170 AENAVGKISASATLTV 185 (977)
Q Consensus 170 a~n~~g~~~~~~~L~V 185 (977)
|.|..|..+.++.|.|
T Consensus 81 a~N~~G~~~~s~~l~v 96 (96)
T cd05732 81 ASNRIGGDQQSMYLEV 96 (96)
T ss_pred EEeCCCCcEEEEEEeC
Confidence 9999999988888865
No 106
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.21 E-value=3.3e-11 Score=103.78 Aligned_cols=78 Identities=18% Similarity=0.397 Sum_probs=66.9
Q ss_pred ccceec-ccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCe-EEEEEEEec
Q psy574 6 EEFRVQ-PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDG-RYQCVVKNV 83 (977)
Q Consensus 6 ~~~~~~-p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G-~Y~C~a~n~ 83 (977)
+.|..+ .+.+.|.+|+.+.|.|.++.|.|.|.|.|++++... ...+.|+.+..+|+|.|.+++.+|+| .|.|.|.|.
T Consensus 3 ~~~~~~~~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~-i~~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~~~ 81 (95)
T cd05845 3 PKWPKEKIRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLH-ITQDERVSMGQNGNLYFANVEEQDSHPDYICHAHFP 81 (95)
T ss_pred CcCCccccceeEEecCCCEEEEecCCCCCCCCEEEEECCCCcc-ccccccEEECCCceEEEEEEehhhCCCCeEEEEEcc
Confidence 455555 467999999999999998899999999999887654 34578999988999999999999999 899999987
Q ss_pred C
Q psy574 84 A 84 (977)
Q Consensus 84 ~ 84 (977)
.
T Consensus 82 ~ 82 (95)
T cd05845 82 G 82 (95)
T ss_pred c
Confidence 4
No 107
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.20 E-value=1.3e-10 Score=98.98 Aligned_cols=70 Identities=30% Similarity=0.594 Sum_probs=59.8
Q ss_pred ecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEec
Q psy574 10 VQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNV 83 (977)
Q Consensus 10 ~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~ 83 (977)
.+|.+..+..|+++.|.|.+ . .|.+.|.|+|||+.|..+ ..|+.+. ++.|.|.+++.+|+|.|+|.+.+.
T Consensus 1 ~~P~~~~v~~G~~v~L~C~~-~-~~~~~i~W~~ng~~i~~~-~~r~~~~-~~~L~I~nv~~~DsG~Y~C~a~e~ 70 (87)
T cd05873 1 LDPRQRTFKLGNNAELKCSP-K-SNLARVVWKFDGKVLTPE-SAKYLLY-RDGLLIFNASEADAGRYQCLSVEK 70 (87)
T ss_pred CCcceEEEECCCCEEEEEEC-C-CCCCeEEEEECCEECCCC-CceEEEE-CCcEEEeCCCHHHCEEEEEEEEec
Confidence 36889999999999999998 3 367899999999999644 3466665 677999999999999999999876
No 108
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.20 E-value=9.5e-11 Score=98.49 Aligned_cols=71 Identities=25% Similarity=0.632 Sum_probs=58.1
Q ss_pred EEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEe-cCcEEEEcCCCC----CCCeEEEEEEEecCceeeeEeEEE
Q psy574 23 ALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV-DGTNLAIQDSRK----TDDGRYQCVVKNVAGTRESTDAVL 94 (977)
Q Consensus 23 v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~-~~g~L~I~~v~~----~D~G~Y~C~a~n~~g~~~s~~~~l 94 (977)
+.|.|.+ .|.|.|+|+|+|||..+......++.+. .+|+|.|..+.. .|+|.|+|.|.|..|...++.+.|
T Consensus 1 ~~l~C~a-~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~~ 76 (77)
T cd05874 1 IVIQCEA-KGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVSNNIVI 76 (77)
T ss_pred CEEEeeC-cccCCCeEEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEeeEEEE
Confidence 5799999 9999999999999999855555566554 368899988875 378999999999999887776554
No 109
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.20 E-value=1.7e-10 Score=102.54 Aligned_cols=95 Identities=17% Similarity=0.208 Sum_probs=73.1
Q ss_pred CCeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcC--eeeeecCCCccccEEEEEccCCceEEEEeecccCCCCeE
Q psy574 188 APIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEG--NRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLI 265 (977)
Q Consensus 188 ~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g--~~~~~~~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y 265 (977)
+|.+. .+.+..+.+|++++|.|.+.|.|.|.+.|+++. ..+.........++.+... .+...|.|.+++.+|+|.|
T Consensus 2 ~p~i~-~~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~-~~~~~L~I~~v~~~D~G~Y 79 (98)
T cd05870 2 QPHII-QLKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQ-HGESSLHIKDVKLSDSGRY 79 (98)
T ss_pred CCEEE-eeccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeec-CCeeEEEEeeCCcCCCEEE
Confidence 45554 467889999999999999999999999999953 3322111122456766542 2345899999999999999
Q ss_pred EEEEEEcCCCceeEEEEEEE
Q psy574 266 ILCLGVNAAGSDLARASLTV 285 (977)
Q Consensus 266 ~~C~a~n~~g~~~~~~~l~V 285 (977)
+ |.|.|..|....++.|.|
T Consensus 80 ~-C~A~N~~G~~~~~~~l~~ 98 (98)
T cd05870 80 D-CEAASRIGGHQKSMYLDI 98 (98)
T ss_pred E-EEEeccCCcceeEEEEeC
Confidence 9 999999999988888764
No 110
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.20 E-value=1.6e-10 Score=102.40 Aligned_cols=96 Identities=19% Similarity=0.263 Sum_probs=74.3
Q ss_pred CCeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCccccEEEEEccCCceEEEEeecccCCCCeEEE
Q psy574 188 APIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIIL 267 (977)
Q Consensus 188 ~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~ 267 (977)
.|+|...+....+..|+.++|.|.+.|.|.|.+.|++++..+........+++.+... ...+.|.|.+++.+|+|.|+
T Consensus 2 ~p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~-~~~~~L~I~~v~~~D~G~Y~- 79 (97)
T cd05869 2 KPKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSH-ARVSSLTLKYIQYTDAGEYL- 79 (97)
T ss_pred CceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcC-ccEEEEEEecCccCcCEEEE-
Confidence 4677777777677778999999999999999999999887653211112344444432 23358999999999999999
Q ss_pred EEEEcCCCceeEEEEEEE
Q psy574 268 CLGVNAAGSDLARASLTV 285 (977)
Q Consensus 268 C~a~n~~g~~~~~~~l~V 285 (977)
|.|.|..|....++.|.|
T Consensus 80 C~A~N~~G~~~~~~~l~v 97 (97)
T cd05869 80 CTASNTIGQDSQSMYLEV 97 (97)
T ss_pred EEEecCCCCeeEEEEEEC
Confidence 999999999999888865
No 111
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.20 E-value=1.3e-10 Score=100.41 Aligned_cols=77 Identities=29% Similarity=0.529 Sum_probs=65.8
Q ss_pred eEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCce----EE-eccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEE
Q psy574 109 TTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRM----SV-LPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATL 183 (977)
Q Consensus 109 ~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~----~~-~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L 183 (977)
+.+.+|+.+.|.|.+.|.|.+.+.|+|++..+..... .. .....|.|.++..+|+|.|+|.|.|..|.....+.|
T Consensus 4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 83 (85)
T cd05857 4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHL 83 (85)
T ss_pred EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEEE
Confidence 4578899999999999999999999999998864321 22 134679999999999999999999999999999888
Q ss_pred EE
Q psy574 184 TV 185 (977)
Q Consensus 184 ~V 185 (977)
.|
T Consensus 84 ~v 85 (85)
T cd05857 84 DV 85 (85)
T ss_pred EC
Confidence 75
No 112
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.20 E-value=6.5e-11 Score=95.59 Aligned_cols=65 Identities=26% Similarity=0.370 Sum_probs=53.2
Q ss_pred EEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecCceeeeEeEEEEE
Q psy574 23 ALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRV 96 (977)
Q Consensus 23 v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V 96 (977)
+.|.|.+ .|.|.|.+.|+|||+.|... ...+.|.|.++..+|+|.|+|+|.|..|... ..+.++|
T Consensus 1 ~~l~c~v-~g~P~P~v~W~kdg~~l~~~-------~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~-~~~~~~l 65 (67)
T cd05863 1 VKLPVKV-AAYPPPEFQWYKDGKLISGK-------HSQHSLQIKDVTEASAGTYTLVLWNSAAGLE-KRISLEL 65 (67)
T ss_pred CEEEEEE-EEeCCCEEEEEECCEECccc-------CCcCEEEECCCCHHHCEEEEEEEEECCccEE-EEEEEEE
Confidence 4799999 99999999999999999421 1256899999999999999999999988633 4445544
No 113
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.20 E-value=7.7e-11 Score=99.32 Aligned_cols=71 Identities=32% Similarity=0.652 Sum_probs=59.2
Q ss_pred EEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEe-cCcEEEEcCCCC----CCCeEEEEEEEecCceeeeEeEEE
Q psy574 23 ALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV-DGTNLAIQDSRK----TDDGRYQCVVKNVAGTRESTDAVL 94 (977)
Q Consensus 23 v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~-~~g~L~I~~v~~----~D~G~Y~C~a~n~~g~~~s~~~~l 94 (977)
++|.|.+ .|.|.|+|+|+|||..+....+.++.+. .+|.|.|.++.. +|+|.|+|+|.|..|...+..+.|
T Consensus 1 i~l~C~~-~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~l 76 (77)
T cd05733 1 IVIKCEA-KGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAISNEIHL 76 (77)
T ss_pred CEEEeeC-cccCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEccccEE
Confidence 5799999 8999999999999999865555566654 468999999864 799999999999999877766554
No 114
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.20 E-value=6.1e-11 Score=97.61 Aligned_cols=63 Identities=35% Similarity=0.759 Sum_probs=55.6
Q ss_pred EEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecCceee
Q psy574 23 ALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRE 88 (977)
Q Consensus 23 v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~ 88 (977)
|.|.|.+ .|.|.|.|.|+|+|..+. ...++.+..++.|.|.+++.+|+|.|+|.|.|..|...
T Consensus 1 v~L~C~~-~g~P~p~i~W~k~g~~~~--~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~ 63 (69)
T cd05746 1 VQIPCSA-QGDPEPTITWNKDGVQVT--ESGKFHISPEGYLAIRDVGVADQGRYECVARNTIGYAS 63 (69)
T ss_pred CEeEecc-eEeCCCEEEEEECCEECC--CCCCEEECCCCEEEECcCChhhCEEEEEEEECCCCcEE
Confidence 5799999 899999999999999884 34577777788999999999999999999999999744
No 115
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.19 E-value=1.9e-10 Score=103.88 Aligned_cols=93 Identities=26% Similarity=0.462 Sum_probs=72.2
Q ss_pred cccceecccceEE----eCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEe--c-----CcEEEEcCCC-CCC
Q psy574 5 REEFRVQPKSQRV----AAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV--D-----GTNLAIQDSR-KTD 72 (977)
Q Consensus 5 ~~~~~~~p~~~~v----~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~--~-----~g~L~I~~v~-~~D 72 (977)
.|.|...|....+ ..|.+++|.|.+ .|.|.+.+.|+|||..|... +.|+.+. . .+.|.|.+++ .+|
T Consensus 4 ~P~~~~~~~~~~~~~~~~~g~~v~L~C~a-~G~P~p~i~W~k~g~~l~~~-~~r~~~~~~~~~~~~~s~L~I~~v~~~~D 81 (109)
T cd05773 4 APDLQKGPQLRKVASRGDGSSDANLVCQA-QGVPRVQFRWAKNGVPLDLG-NPRYEETTEHTGTVHTSILTIINVSAALD 81 (109)
T ss_pred ccccccCCceEEEEEecCCCCEEEEEEEC-cccCCCEEEEEECCEECCCC-CCeEEEEeeccCccceeEEEECcCCccCC
Confidence 5777777764333 245799999999 89999999999999998533 3355422 1 3579999997 699
Q ss_pred CeEEEEEEEecCceeeeEeEEEEEEcCC
Q psy574 73 DGRYQCVVKNVAGTRESTDAVLRVLVKP 100 (977)
Q Consensus 73 ~G~Y~C~a~n~~g~~~s~~~~l~V~~~P 100 (977)
.|.|+|.|.|..|.. ...+.|.|..+|
T Consensus 82 ~G~Y~C~A~N~~G~~-~~~i~L~~~~~p 108 (109)
T cd05773 82 YALFTCTAHNSLGED-SLDIQLVSTSRP 108 (109)
T ss_pred CEEEEEEEEeCCccC-cEEEEEEecCCC
Confidence 999999999999985 566888888776
No 116
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.19 E-value=6.1e-11 Score=97.62 Aligned_cols=68 Identities=32% Similarity=0.626 Sum_probs=60.1
Q ss_pred EEEEEEecccCceEEEEEECCeeCCC-CceEEeccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEE
Q psy574 117 IVFECSVGGDAVLTVHWKRLGSAMPE-DRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLT 184 (977)
Q Consensus 117 v~l~C~v~g~p~~~i~W~k~~~~l~~-~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~ 184 (977)
+.|.|.+.|.|.|.|.|+|++..+.. .++.+..++.|.|.++..+|+|.|+|.|.|..|..+.++.|+
T Consensus 1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~Lt 69 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISPEGYLAIRDVGVADQGRYECVARNTIGYASVSMVLS 69 (69)
T ss_pred CEeEecceEeCCCEEEEEECCEECCCCCCEEECCCCEEEECcCChhhCEEEEEEEECCCCcEEEEEEeC
Confidence 47999999999999999999988754 466666788999999999999999999999999988887763
No 117
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.19 E-value=8.6e-11 Score=96.21 Aligned_cols=68 Identities=19% Similarity=0.267 Sum_probs=56.7
Q ss_pred EEEEEEecccCceEEEEEECCeeCCCCceEEeccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy574 117 IVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTV 185 (977)
Q Consensus 117 v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V 185 (977)
+.|.|.+.|.|.|.+.|+|++.++... ..+..+..|.|.++..+|+|.|+|.|.|..|..+....+++
T Consensus 1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~-~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l 68 (70)
T cd05864 1 VKIPVKYYGYPPPEVKWYKNGQLIVLN-HTFKRGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQL 68 (70)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCC-CEEccCCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEE
Confidence 468999999999999999999998754 33445668999999999999999999999997665555444
No 118
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.19 E-value=4.9e-11 Score=97.65 Aligned_cols=61 Identities=28% Similarity=0.484 Sum_probs=51.7
Q ss_pred EEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecCceee
Q psy574 23 ALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRE 88 (977)
Q Consensus 23 v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~ 88 (977)
+.|.|.+ .|+|.|.+.|+|||+.|... .+ +..++.|.|.+++.+|+|.|+|.|.|..|..+
T Consensus 1 ~~~~c~v-~G~P~P~v~W~k~g~~l~~~--~~--~~~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~ 61 (70)
T cd05864 1 VKIPVKY-YGYPPPEVKWYKNGQLIVLN--HT--FKRGVHLTIYEVTEKDAGNYTVVLTNPITKEE 61 (70)
T ss_pred CEEEeEE-EEeCCCEEEEEECCEECCCC--CE--EccCCEEEECcCCHHHCEEEEEEEEECCCcee
Confidence 4689999 99999999999999999432 23 33456899999999999999999999998654
No 119
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=99.19 E-value=2.6e-10 Score=108.69 Aligned_cols=112 Identities=16% Similarity=0.258 Sum_probs=84.3
Q ss_pred EEEEcCCCCCCCeEEEEEEEecCceeeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEeccc-Cc-eEEEEEECCee
Q psy574 62 NLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGD-AV-LTVHWKRLGSA 139 (977)
Q Consensus 62 ~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~-p~-~~i~W~k~~~~ 139 (977)
+|+|.+++.+|+|.|+|.+.+..+. ....+.|.|..+|.+...+......+|+.+.|.|.+.|. |. +.|.|+|++..
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~-~~~~~~l~v~~~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~ 80 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQ-AQQIIQLSVSEPPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTREPPG 80 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcc-eeeEEEEEEecCCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEEECCCC
Confidence 6999999999999999999987776 456789999999998888776666689999999999875 54 58999999864
Q ss_pred CCC-----Cc-----eEEecc------ceEEEccCccCCCeEEEEEEEeCC
Q psy574 140 MPE-----DR-----MSVLPS------RSLQLSDVRLEDAGEYVCEAENAV 174 (977)
Q Consensus 140 l~~-----~~-----~~~~~~------~~L~I~~v~~~D~G~Y~C~a~n~~ 174 (977)
... .. .....+ ..|.|..-..++...|+|.+.+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~ 131 (139)
T cd05771 81 DSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVS 131 (139)
T ss_pred CccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCC
Confidence 211 11 111233 345665555556779999998753
No 120
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.19 E-value=8.8e-11 Score=101.31 Aligned_cols=75 Identities=31% Similarity=0.531 Sum_probs=63.0
Q ss_pred CeEEEEEEecccCce--EEEEEECCeeCCCCc----eE----EeccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEE
Q psy574 115 SIIVFECSVGGDAVL--TVHWKRLGSAMPEDR----MS----VLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLT 184 (977)
Q Consensus 115 ~~v~l~C~v~g~p~~--~i~W~k~~~~l~~~~----~~----~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~ 184 (977)
+++.|.|.+.|.|.+ .+.|+|++..+.... +. ....+.|.|.+++.+|+|.|+|.|.|..|..++.+.|.
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~ 80 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLI 80 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEE
Confidence 468999999999877 679999998875321 11 12457899999999999999999999999999999999
Q ss_pred EeeCC
Q psy574 185 VQMAP 189 (977)
Q Consensus 185 V~~~p 189 (977)
|..||
T Consensus 81 V~~pP 85 (85)
T cd04970 81 VRGPP 85 (85)
T ss_pred EECCC
Confidence 99876
No 121
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.18 E-value=1.6e-10 Score=104.44 Aligned_cols=92 Identities=23% Similarity=0.367 Sum_probs=72.8
Q ss_pred cCCeEEeCCCceEE----eCCCeEEEEEEecccCceEEEEEECCeeCCC--CceEEe-------ccceEEEccCc-cCCC
Q psy574 98 VKPYIIRGPKDTTV----SASSIIVFECSVGGDAVLTVHWKRLGSAMPE--DRMSVL-------PSRSLQLSDVR-LEDA 163 (977)
Q Consensus 98 ~~P~~~~~p~~~~v----~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~--~~~~~~-------~~~~L~I~~v~-~~D~ 163 (977)
-+|.+...|....+ ..|.++.|.|.+.|.|.+.+.|+|++..+.. .++... ..+.|.|.++. .+|.
T Consensus 3 ~~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~ 82 (109)
T cd05773 3 FAPDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDY 82 (109)
T ss_pred cccccccCCceEEEEEecCCCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCC
Confidence 46666666653322 2468999999999999999999999998863 233321 13579999997 6999
Q ss_pred eEEEEEEEeCCeeEEEEEEEEEeeCC
Q psy574 164 GEYVCEAENAVGKISASATLTVQMAP 189 (977)
Q Consensus 164 G~Y~C~a~n~~g~~~~~~~L~V~~~p 189 (977)
|.|+|.|.|..|..+..+.|.|..+|
T Consensus 83 G~Y~C~A~N~~G~~~~~i~L~~~~~p 108 (109)
T cd05773 83 ALFTCTAHNSLGEDSLDIQLVSTSRP 108 (109)
T ss_pred EEEEEEEEeCCccCcEEEEEEecCCC
Confidence 99999999999999999999998766
No 122
>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []. They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....
Probab=99.18 E-value=1.1e-10 Score=100.85 Aligned_cols=83 Identities=31% Similarity=0.508 Sum_probs=73.9
Q ss_pred CCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecC-CcceEEEEecCCcCeEEecCCCCCceEEEEEEEEcCC
Q psy574 644 VPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGN-NSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRA 722 (977)
Q Consensus 644 ~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~-~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~~ 722 (977)
+|.++++...+.++|.|+|++| ...++.+.+|.|+|+..+ ........+..+.+.++|.+|+|++.|.|+|+|.+..
T Consensus 2 ~P~~l~v~~~~~~sv~v~W~~~--~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~v~a~~~~ 79 (85)
T PF00041_consen 2 APENLSVSNISPTSVTVSWKPP--SSGNGPITGYRVEYRSVNSTSDWQEVTVPGNETSYTITGLQPGTTYEFRVRAVNSD 79 (85)
T ss_dssp SSEEEEEEEECSSEEEEEEEES--SSTSSSESEEEEEEEETTSSSEEEEEEEETTSSEEEEESCCTTSEEEEEEEEEETT
T ss_pred cCcCeEEEECCCCEEEEEEECC--CCCCCCeeEEEEEEEecccceeeeeeeeeeeeeeeeeccCCCCCEEEEEEEEEeCC
Confidence 6799999999999999999999 477899999999999876 3336667777788899999999999999999999999
Q ss_pred CcCCCC
Q psy574 723 GTGPYS 728 (977)
Q Consensus 723 G~g~~S 728 (977)
|.|++|
T Consensus 80 g~g~~S 85 (85)
T PF00041_consen 80 GEGPPS 85 (85)
T ss_dssp EEEEEE
T ss_pred cCcCCC
Confidence 998875
No 123
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.17 E-value=9e-11 Score=98.50 Aligned_cols=77 Identities=22% Similarity=0.443 Sum_probs=62.6
Q ss_pred ccceecccceEEeCCCcEEEEEECCCCCCC-CeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecC
Q psy574 6 EEFRVQPKSQRVAAGDTALLECGPPRGHPE-PTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVA 84 (977)
Q Consensus 6 ~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~-~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~ 84 (977)
|++.+.|....+.+|++++|.|.+ .+.|. ..+.|+|||+.+.. .++.|.|.++ .+|+|.|+|.|.|.
T Consensus 1 ~vv~~~P~~~~v~~G~~V~L~C~~-~~~p~~~~~~W~kng~~l~~---------~~~~l~i~~~-~~dsG~Y~C~a~~~- 68 (78)
T cd05752 1 AVVSLDPPWTTIFQGEKVTLTCNG-FNSPEQNSTQWYHNGKLLET---------TTNSYRIRAA-NNDSGEYRCQTQGS- 68 (78)
T ss_pred CeEEeCCCCeEeeCCCCEEEEEeC-CCCCCCccEEEEECCEEeec---------cCCeEEEeec-ccCCEEeEEECCCC-
Confidence 467888999999999999999999 66665 47999999998821 2568999999 99999999999864
Q ss_pred ceeeeEeEEEEE
Q psy574 85 GTRESTDAVLRV 96 (977)
Q Consensus 85 g~~~s~~~~l~V 96 (977)
..|..+.|+|
T Consensus 69 --~~S~~v~l~V 78 (78)
T cd05752 69 --SLSDPVHLEV 78 (78)
T ss_pred --cCCCCEEEeC
Confidence 3455566654
No 124
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.17 E-value=2.4e-10 Score=98.78 Aligned_cols=81 Identities=30% Similarity=0.522 Sum_probs=64.0
Q ss_pred ceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCC-ceEEEe-cCcEEEEcCCCCCCCeEEEEEEEecCceeeeEe
Q psy574 14 SQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENS-KRLRLV-DGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTD 91 (977)
Q Consensus 14 ~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~-~r~~~~-~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~ 91 (977)
.+.+.+|+.+.|.|.+ .|.|.+.|.|+|||..+..... .++.+. ..+.|.|.+++.+|+|.|+|.|.|..|... ..
T Consensus 3 ~~~v~~G~~~~L~C~~-~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~-~~ 80 (85)
T cd05857 3 LHAVPAANTVKFRCPA-AGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSIN-HT 80 (85)
T ss_pred cEEcCCCCEEEEEEEc-CCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEE-EE
Confidence 3568899999999999 8899999999999999854322 122332 345799999999999999999999999754 44
Q ss_pred EEEEE
Q psy574 92 AVLRV 96 (977)
Q Consensus 92 ~~l~V 96 (977)
+.|.|
T Consensus 81 ~~l~v 85 (85)
T cd05857 81 YHLDV 85 (85)
T ss_pred EEEEC
Confidence 56654
No 125
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.17 E-value=1.2e-10 Score=98.28 Aligned_cols=78 Identities=22% Similarity=0.425 Sum_probs=63.3
Q ss_pred EEeCCCceEEeCCCeEEEEEEecccCce-EEEEEECCeeCCCCceEEeccceEEEccCccCCCeEEEEEEEeCCeeEE-E
Q psy574 102 IIRGPKDTTVSASSIIVFECSVGGDAVL-TVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKIS-A 179 (977)
Q Consensus 102 ~~~~p~~~~v~~G~~v~l~C~v~g~p~~-~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~-~ 179 (977)
|...|.++.+.+|+++.|.|.+.|.|.| .|.|+|++.++.. +.. ...+.|.|.++ .|+|.|+|.|.|..|... .
T Consensus 1 f~~~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~-~~~-~~~s~L~i~~~--~d~g~Y~C~A~N~~G~~~s~ 76 (81)
T cd05749 1 FTVEPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGD-PPA-PSPSVLNVPGL--NETSKFSCEAHNAKGVTTSR 76 (81)
T ss_pred CcCCCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCC-CCC-CCCCEEEEccc--cCCeEEEEEEEeccCcEEee
Confidence 3567889999999999999999999999 7999999998864 111 24568999887 488999999999999744 3
Q ss_pred EEEE
Q psy574 180 SATL 183 (977)
Q Consensus 180 ~~~L 183 (977)
.++|
T Consensus 77 ~a~~ 80 (81)
T cd05749 77 TGTV 80 (81)
T ss_pred eEEe
Confidence 5554
No 126
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.17 E-value=8.5e-11 Score=99.81 Aligned_cols=73 Identities=33% Similarity=0.539 Sum_probs=59.5
Q ss_pred EEEEEECCCCCCCCeEEEEeCCEEeec------CCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecCceeeeEeEEEEE
Q psy574 23 ALLECGPPRGHPEPTLVWKKNGHPIDF------ENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRV 96 (977)
Q Consensus 23 v~L~C~~~~g~P~~~v~W~k~g~~l~~------~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V 96 (977)
|+|.|.+ .|.|.|.|.|+|++..... ...+|+.+..+++|.|.+++.+|+|.|+|.|.|..|...++.+.|+|
T Consensus 1 v~l~C~~-~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l~~ 79 (79)
T cd05734 1 VTLNCSA-EGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVLTV 79 (79)
T ss_pred CEeEeeC-eEeCCCEEEEEECCCccccccccccccCCCEEEecCCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEEeC
Confidence 5899999 8999999999996432211 13467777778999999999999999999999999987777777664
No 127
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.17 E-value=1.3e-10 Score=95.83 Aligned_cols=69 Identities=30% Similarity=0.648 Sum_probs=57.3
Q ss_pred EEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecCceeeeEeEEEEE
Q psy574 23 ALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRV 96 (977)
Q Consensus 23 v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V 96 (977)
++|.|.+ .|.|.|.+.|+|++..+. ..++.+..++.|.|.+++.+|+|.|+|.|.|..|... ..+.|.|
T Consensus 1 v~l~C~~-~g~P~p~v~W~k~~~~~~---~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~-~~~~l~V 69 (69)
T cd05725 1 VEFQCEV-GGDPVPTVLWRKEDGELP---KGRAEILDDKSLKIRNVTAGDEGSYTCEAENMVGKIE-ASASLTV 69 (69)
T ss_pred CEEEEEC-ccCCCCEEEEEECCccCC---CCcEEEeeCCEEEECcCChhHCEEEEEEEEcCCCcEE-EEEEEEC
Confidence 5799999 899999999999988773 3366666788999999999999999999999998754 4455543
No 128
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.17 E-value=1.2e-10 Score=97.25 Aligned_cols=69 Identities=29% Similarity=0.468 Sum_probs=60.1
Q ss_pred EEEEEEecccCceEEEEEECCeeCC---CCceEEeccceEEEccCccCCCeEEEEEEEeCCee-EEEEEEEEE
Q psy574 117 IVFECSVGGDAVLTVHWKRLGSAMP---EDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGK-ISASATLTV 185 (977)
Q Consensus 117 v~l~C~v~g~p~~~i~W~k~~~~l~---~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~-~~~~~~L~V 185 (977)
++|.|.+.|.|.|.|.|+|++..+. ..++....++.|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|
T Consensus 1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v 73 (74)
T cd05738 1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLRSGALQIENSEESDQGKYECVATNSAGTRYSAPANLYV 73 (74)
T ss_pred CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEcCCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence 4799999999999999999998875 34666667789999999999999999999999997 567788876
No 129
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.17 E-value=1.9e-10 Score=96.31 Aligned_cols=70 Identities=26% Similarity=0.461 Sum_probs=60.2
Q ss_pred eEEEEEEecccCceEEEEEECCeeCCC-CceEEe---ccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy574 116 IIVFECSVGGDAVLTVHWKRLGSAMPE-DRMSVL---PSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTV 185 (977)
Q Consensus 116 ~v~l~C~v~g~p~~~i~W~k~~~~l~~-~~~~~~---~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V 185 (977)
++.|.|.+.|.|.|.+.|+|++..+.. .++.+. ....|.|.++..+|+|.|+|.|.|..|..+..+.|.|
T Consensus 1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 74 (74)
T cd05748 1 SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV 74 (74)
T ss_pred CEEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence 378999999999999999999998843 444443 2468999999999999999999999999998888875
No 130
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.16 E-value=2.2e-10 Score=99.78 Aligned_cols=84 Identities=26% Similarity=0.476 Sum_probs=67.9
Q ss_pred cccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCC--CceEEEecCcEEEEcCCCCCCCeEEEEEEEecCceee
Q psy574 11 QPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFEN--SKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRE 88 (977)
Q Consensus 11 ~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~--~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~ 88 (977)
.|..+.+.+|++++|.|.+ .+ |.+.+.|+|++..+.... ..++... .+.|.|.+++.+|+|.|+|.|.+..+...
T Consensus 2 ~~~~~~v~~g~~v~L~C~~-~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~-~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~ 78 (89)
T cd04979 2 EEKVVTVVEGNSVFLECSP-KS-NLASVVWLFQGGPLQRKEEPEERLLVT-EDGLLIRSVSPADAGVYTCQSVEHGFKQT 78 (89)
T ss_pred cceEEEEECCCcEEEEEeC-CC-CCceEEEEECCcccccccCcCceEEEc-CCCEEEccCCHHHCEEEEEEEecCcccee
Confidence 5778899999999999998 55 778999999998875432 2455555 35599999999999999999998776666
Q ss_pred eEeEEEEEE
Q psy574 89 STDAVLRVL 97 (977)
Q Consensus 89 s~~~~l~V~ 97 (977)
+..+.|.|.
T Consensus 79 ~~~~~l~V~ 87 (89)
T cd04979 79 LATYSLNVL 87 (89)
T ss_pred EeEEEEEEe
Confidence 676777775
No 131
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.16 E-value=1.1e-10 Score=95.80 Aligned_cols=69 Identities=25% Similarity=0.421 Sum_probs=53.4
Q ss_pred EEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecC-ceeeeEeEEE
Q psy574 23 ALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVA-GTRESTDAVL 94 (977)
Q Consensus 23 v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~-g~~~s~~~~l 94 (977)
+.|.|.+ .|.|.|.+.|+|||+++.. ...++.. .+++|.|.+++.+|+|.|+|.|.|.. +......+.|
T Consensus 1 ~~l~c~v-~g~P~P~v~W~kdg~~l~~-~~~~~~~-~~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i~~ 70 (72)
T cd07702 1 YRLTPKV-KAFPAPEVIWLKDGLPAAE-KCSRYHV-DGYSLVIKDVTEEDAGIYTILLGIKQYNLFKNLTITL 70 (72)
T ss_pred CeEEeeE-EEcCCCeEEEEECCEECCC-CCcEEEe-CCCEEEECcCCHHHCEEEEEEEEccccceEeeEEEEE
Confidence 4689999 8999999999999999843 2245544 35689999999999999999999985 3333333333
No 132
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.16 E-value=3e-10 Score=99.29 Aligned_cols=81 Identities=25% Similarity=0.369 Sum_probs=68.2
Q ss_pred CCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCC-ceEEe--cc--ceEEEccCccCCCeEEEEEEEeCCeeEEE
Q psy574 105 GPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED-RMSVL--PS--RSLQLSDVRLEDAGEYVCEAENAVGKISA 179 (977)
Q Consensus 105 ~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~-~~~~~--~~--~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~ 179 (977)
.|..+.+.+|+++.|.|.+.|.|.+.+.|+|++..+... ++.+. .+ .+|.|.+++.+|+|.|+|.|.|..|....
T Consensus 7 ~p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~ 86 (92)
T cd05891 7 LPDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGETV 86 (92)
T ss_pred CCCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCceee
Confidence 466788999999999999999999999999999887543 33332 21 37999999999999999999999999888
Q ss_pred EEEEEE
Q psy574 180 SATLTV 185 (977)
Q Consensus 180 ~~~L~V 185 (977)
.+.|.|
T Consensus 87 ~~~v~~ 92 (92)
T cd05891 87 DVTVSV 92 (92)
T ss_pred EEEEEC
Confidence 887765
No 133
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.15 E-value=2.7e-10 Score=101.16 Aligned_cols=78 Identities=23% Similarity=0.442 Sum_probs=65.3
Q ss_pred ecccceEEeCCCcEEEEEECCCCCCCC-eEEEEeCCEEeecCCCceEEEecC-------cEEEEcCCCCCC-CeEEEEEE
Q psy574 10 VQPKSQRVAAGDTALLECGPPRGHPEP-TLVWKKNGHPIDFENSKRLRLVDG-------TNLAIQDSRKTD-DGRYQCVV 80 (977)
Q Consensus 10 ~~p~~~~v~~G~~v~L~C~~~~g~P~~-~v~W~k~g~~l~~~~~~r~~~~~~-------g~L~I~~v~~~D-~G~Y~C~a 80 (977)
..+..+.+.+|++++|.|.+ .|.|.| .|.|++++..+......|+.+... +.|.|.+++.+| .|.|.|.|
T Consensus 6 ~~~~~~~~~~G~~v~L~C~~-~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A 84 (98)
T cd05758 6 TSEATQYAILGDKGRVECFI-FSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTA 84 (98)
T ss_pred cCCCcEEEeCCCcEEEEEEE-cccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeEEEEE
Confidence 45667889999999999999 899998 699999999986555567777643 379999999955 89999999
Q ss_pred EecCceee
Q psy574 81 KNVAGTRE 88 (977)
Q Consensus 81 ~n~~g~~~ 88 (977)
.|..|...
T Consensus 85 ~N~~G~~~ 92 (98)
T cd05758 85 WNSFGSGT 92 (98)
T ss_pred EcCCCccc
Confidence 99999744
No 134
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.15 E-value=1.6e-10 Score=100.97 Aligned_cols=82 Identities=23% Similarity=0.349 Sum_probs=64.4
Q ss_pred ccceEEeCCCcEEEEEECCCC-----CCCCeEEEEeCCEEeecC--CCceEEEecCcEEEEcCCCCCCCeEEEEEEEecC
Q psy574 12 PKSQRVAAGDTALLECGPPRG-----HPEPTLVWKKNGHPIDFE--NSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVA 84 (977)
Q Consensus 12 p~~~~v~~G~~v~L~C~~~~g-----~P~~~v~W~k~g~~l~~~--~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~ 84 (977)
+....+.+|+++.|.|.+ .+ .|.+.|.|+|+|..+... ...|+.. .++.|.|.+++.+|+|.|+|.+.|..
T Consensus 6 ~~~~~v~~G~~~~L~C~~-~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~-~~~~L~I~~~~~~DsG~Y~C~~~N~~ 83 (94)
T cd05756 6 DKKSYVLEGEPVVIKCPL-FYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQ-QKDLLWFLPAALEDSGLYTCVVRNST 83 (94)
T ss_pred eeEEEEecCCCeEEECCC-CCcccccCCCceEEEEEcCCCCcccccccceeee-cCCeEEEccCCcccCeEEEEEEcCCC
Confidence 356788999999999998 56 688999999999765322 2345544 36889999999999999999999998
Q ss_pred ceeeeEeEEEEE
Q psy574 85 GTRESTDAVLRV 96 (977)
Q Consensus 85 g~~~s~~~~l~V 96 (977)
|... ..+.|+|
T Consensus 84 g~~~-~~~~L~v 94 (94)
T cd05756 84 YCMK-VSISLTV 94 (94)
T ss_pred ccEE-EEEEEEC
Confidence 8754 3455553
No 135
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.14 E-value=1.7e-10 Score=95.79 Aligned_cols=69 Identities=30% Similarity=0.657 Sum_probs=60.0
Q ss_pred EEEEEEecccCceEEEEEECCeeCCCCceEEe-ccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy574 117 IVFECSVGGDAVLTVHWKRLGSAMPEDRMSVL-PSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTV 185 (977)
Q Consensus 117 v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~-~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V 185 (977)
+.|.|.+.|.|.|.+.|+|++..+...+.... ....|.|.++..+|+|.|+|.|.|..|..+..+.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKIGGELPADRTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCeECCCCceeEecCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence 47999999999999999999988766544433 4568999999999999999999999999988888877
No 136
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.14 E-value=1.6e-10 Score=98.63 Aligned_cols=80 Identities=21% Similarity=0.346 Sum_probs=66.1
Q ss_pred ecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecCceeee
Q psy574 10 VQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRES 89 (977)
Q Consensus 10 ~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~s 89 (977)
+++....|.+|++++|.|.+..+.+...+.|+|+|..+.. ...++.|.|.+++.+|+|.|+|.+.+..+...|
T Consensus 4 l~~p~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~-------~~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~s 76 (83)
T cd05753 4 LQVPSRVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKY-------SHSNSNLSIPQATLSDSGSYHCSGIIGSYDYSS 76 (83)
T ss_pred EECCcceecCCCCEEEEeeCCCCCcceEEEEEECCeEccc-------cCCCceEEECccCHHHCEEEEEEEEeCCceecC
Confidence 4455668999999999999855677789999999987731 123568999999999999999999999998888
Q ss_pred EeEEEEE
Q psy574 90 TDAVLRV 96 (977)
Q Consensus 90 ~~~~l~V 96 (977)
..+.|+|
T Consensus 77 ~~~~i~~ 83 (83)
T cd05753 77 EPVSITV 83 (83)
T ss_pred CCEEEEC
Confidence 8777765
No 137
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.14 E-value=3.1e-10 Score=100.64 Aligned_cols=95 Identities=19% Similarity=0.177 Sum_probs=73.2
Q ss_pred CCeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCccccEEEEEccCCceEEEEeecccCCCCeEEE
Q psy574 188 APIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIIL 267 (977)
Q Consensus 188 ~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~ 267 (977)
+|.+. .+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+........+++.+... .+.+.|.|.+++.+|+|.|+
T Consensus 2 ~P~i~-~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~- 78 (96)
T cd05732 2 QPKIT-YLENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGH-ARVSSLTLKDVQLTDAGRYD- 78 (96)
T ss_pred Cccce-ecCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCC-ccEEEEEECcCCcCcCEEeE-
Confidence 45554 4567889999999999999999999999999885443211112345554332 34469999999999999999
Q ss_pred EEEEcCCCceeEEEEEEE
Q psy574 268 CLGVNAAGSDLARASLTV 285 (977)
Q Consensus 268 C~a~n~~g~~~~~~~l~V 285 (977)
|.|.|..|....++.|.|
T Consensus 79 C~a~N~~G~~~~s~~l~v 96 (96)
T cd05732 79 CEASNRIGGDQQSMYLEV 96 (96)
T ss_pred EEEEeCCCCcEEEEEEeC
Confidence 999999999988888764
No 138
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.14 E-value=1.8e-10 Score=95.40 Aligned_cols=70 Identities=26% Similarity=0.587 Sum_probs=56.6
Q ss_pred EEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecCceeeeEeEEEEE
Q psy574 23 ALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRV 96 (977)
Q Consensus 23 v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V 96 (977)
++|.|.+ .|.|.|.|.|+|++..+... .+.....+++|.|.+++.+|+|.|+|.|.|..|... ..+.|.|
T Consensus 1 ~~L~C~~-~G~P~P~v~W~k~~~~~~~~--~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~-~~~~l~V 70 (71)
T cd05876 1 LVLECIA-EGLPTPEVHWDRIDGPLSPN--RTKKLNNNKTLQLDNVLESDDGEYVCTAENSEGSAR-HHYTVTV 70 (71)
T ss_pred CEEEEEe-eEecCCeEEEEECCcCCCCC--ceeEEcCCCEEEEcccCHHhCEEEEEEEEcCCCeEE-EEEEEEE
Confidence 4799999 89999999999999877432 222334568999999999999999999999999744 5566665
No 139
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.13 E-value=3e-10 Score=94.99 Aligned_cols=75 Identities=28% Similarity=0.365 Sum_probs=62.5
Q ss_pred EEEEEEEecCCCCeEEEEEcCeeeeecCCCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEE
Q psy574 206 AVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTV 285 (977)
Q Consensus 206 v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V 285 (977)
++|.|.+.|.|.|.|.|+|++..+.. ...++.+.....+...|.|.+++.+|+|.|+ |.|.|..|.....+.|.|
T Consensus 1 v~L~C~v~G~P~P~v~W~k~~~~i~~----~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~-C~a~N~~G~~~~~~~l~v 75 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKKNNEMLTY----NTDRISLYQDNCGRICLLIQNANKEDAGWYT-VSAVNEAGVVSCNARLDV 75 (75)
T ss_pred CEEEEEEeecCCCeEEEEECCEECCC----CCCcEEEEEcCCCeEEEEECCCCcccCEEEE-EEEEcCCCcEEEEEEEeC
Confidence 47999999999999999999987632 2346666554345567999999999999999 999999999999888765
No 140
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.13 E-value=3.2e-10 Score=94.94 Aligned_cols=71 Identities=32% Similarity=0.683 Sum_probs=57.0
Q ss_pred cEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEec---CcEEEEcCCCCCCCeEEEEEEEecCceeeeEeEEEEE
Q psy574 22 TALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD---GTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRV 96 (977)
Q Consensus 22 ~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~---~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V 96 (977)
++.|.|.+ .|.|.|.+.|+|||..+... .++.+.. .+.|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus 1 ~~~l~c~~-~G~P~p~v~W~k~g~~l~~~--~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~V 74 (74)
T cd05748 1 SVRLEVPI-SGRPTPTVTWSKDGKPLKLS--GRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEK-SATINVKV 74 (74)
T ss_pred CEEEEeeE-eeeCCCeEEEEECCEEcCCC--CeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccE-EEEEEEEC
Confidence 47899999 99999999999999998433 3555442 3579999999999999999999999874 34455543
No 141
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.13 E-value=3.4e-10 Score=94.82 Aligned_cols=73 Identities=34% Similarity=0.662 Sum_probs=59.6
Q ss_pred CCcEEEEEECCCCCCCCeEEEEe-CCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecCceeeeEeEEEEE
Q psy574 20 GDTALLECGPPRGHPEPTLVWKK-NGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRV 96 (977)
Q Consensus 20 G~~v~L~C~~~~g~P~~~v~W~k-~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V 96 (977)
|+.+.|.|.+ .|.|.|.+.|++ +++.+. ...+..+..+++|.|.++..+|.|.|+|+|.|..|.. +..+.|.|
T Consensus 1 G~~~~l~C~~-~g~P~p~v~W~~~~~~~~~--~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~v 74 (74)
T cd05764 1 GQRATLRCKA-RGDPEPAIHWISPDGKLIS--NSSRTLVYDNGTLDILITTVKDTGSFTCIASNAAGEA-TATVELHI 74 (74)
T ss_pred CCeEEEEEEc-cCcCCCEEEEEeCCCEEec--CCCeEEEecCCEEEEEECChhhCEEEEEEEECCCCeE-EEEEEEEC
Confidence 7899999999 899999999997 676663 3345666668899999999999999999999999874 34455543
No 142
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.13 E-value=3.3e-10 Score=94.85 Aligned_cols=72 Identities=25% Similarity=0.511 Sum_probs=61.5
Q ss_pred CCeEEEEEEecccCceEEEEEE-CCeeCCC-CceEEeccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy574 114 SSIIVFECSVGGDAVLTVHWKR-LGSAMPE-DRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTV 185 (977)
Q Consensus 114 G~~v~l~C~v~g~p~~~i~W~k-~~~~l~~-~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V 185 (977)
|+.+.|.|.+.|.|.|.+.|++ ++..+.. .+.....+++|.|.++..+|+|.|+|.|.|..|..++.+.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 74 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYDNGTLDILITTVKDTGSFTCIASNAAGEATATVELHI 74 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEEecCCEEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence 7899999999999999999997 5555543 3445557789999999999999999999999999888888765
No 143
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.12 E-value=2.8e-10 Score=97.63 Aligned_cols=76 Identities=21% Similarity=0.476 Sum_probs=63.7
Q ss_pred EEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceEEe--ccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy574 110 TVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVL--PSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTV 185 (977)
Q Consensus 110 ~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~--~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V 185 (977)
....|+++.|.|.+.|.|.|.+.|+|++..+........ ....|.|.+++.+|+|.|+|.|.|..|..++.+.|.|
T Consensus 5 ~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~v 82 (82)
T cd05856 5 ARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKVDV 82 (82)
T ss_pred eccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccceecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEEeC
Confidence 456799999999999999999999999988754332222 3468999999999999999999999999888887764
No 144
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.12 E-value=3.2e-10 Score=95.52 Aligned_cols=69 Identities=30% Similarity=0.590 Sum_probs=56.3
Q ss_pred EEEEEEecccCceEEEEEECCeeCCCC--ceEEe-ccceEEEccCccCCCeEEEEEEEeCCeeEE--EEEEEEE
Q psy574 117 IVFECSVGGDAVLTVHWKRLGSAMPED--RMSVL-PSRSLQLSDVRLEDAGEYVCEAENAVGKIS--ASATLTV 185 (977)
Q Consensus 117 v~l~C~v~g~p~~~i~W~k~~~~l~~~--~~~~~-~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~--~~~~L~V 185 (977)
++|.|.+.|.|.|.|.|+|++..+... ++.+. .++.|.|.++..+|+|.|+|.|.|..|... +.+.|.|
T Consensus 1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v 74 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSI 74 (77)
T ss_pred CEEEEEeeecCCCcEEEEECCEECCCCCccEEEeCCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEE
Confidence 579999999999999999999988653 33333 346899999999999999999999999864 4555554
No 145
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.12 E-value=2e-10 Score=94.94 Aligned_cols=69 Identities=28% Similarity=0.481 Sum_probs=55.0
Q ss_pred EEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecCceeeeEeEEEEE
Q psy574 23 ALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRV 96 (977)
Q Consensus 23 v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V 96 (977)
+.|.|.+ .|.|.|.+.|+|||+.+... .++. ..+++|.|.+++.+|+|.|+|.|.|..|... ..+.+.|
T Consensus 1 ~~l~c~v-~g~P~p~v~W~k~g~~l~~~--~~~~-~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~-~~~~~~~ 69 (71)
T cd04976 1 VRLPVKV-KAYPPPEIQWYKNGKLISEK--NRTK-KSGHSLTIKDVTEEDAGNYTVVLTNKQAKLE-KRLTFTL 69 (71)
T ss_pred CEEEeEE-EEeCCCEEEEEECCEECCCC--CEEE-cCCCEEEECcCCHHHCEEEEEEEEcCCccEE-EEEEEEE
Confidence 4799999 89999999999999999533 3443 3467899999999999999999999987633 3344443
No 146
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.11 E-value=2.8e-10 Score=95.00 Aligned_cols=67 Identities=21% Similarity=0.296 Sum_probs=56.2
Q ss_pred EEEEEecccCceEEEEEECCeeCCCCceE---Ee------ccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEE
Q psy574 118 VFECSVGGDAVLTVHWKRLGSAMPEDRMS---VL------PSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLT 184 (977)
Q Consensus 118 ~l~C~v~g~p~~~i~W~k~~~~l~~~~~~---~~------~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~ 184 (977)
-|.|.+.|+|.|+|+|+|++..|..++.. +. ..+.|.|.++..+|+|.|+|.|+|..|..++++.+.
T Consensus 2 ~i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 77 (79)
T cd05855 2 CIPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH 77 (79)
T ss_pred eEEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence 37899999999999999999999765432 11 235799999999999999999999999988877765
No 147
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.11 E-value=2.9e-10 Score=99.05 Aligned_cols=76 Identities=22% Similarity=0.450 Sum_probs=57.0
Q ss_pred CCcEEEEEECCCCCCCCeEEEEeC----CEEeecCCCceEEEe----------cCcEEEEcCCCCCCCeEEEEEEEecCc
Q psy574 20 GDTALLECGPPRGHPEPTLVWKKN----GHPIDFENSKRLRLV----------DGTNLAIQDSRKTDDGRYQCVVKNVAG 85 (977)
Q Consensus 20 G~~v~L~C~~~~g~P~~~v~W~k~----g~~l~~~~~~r~~~~----------~~g~L~I~~v~~~D~G~Y~C~a~n~~g 85 (977)
|++++|.|.+ .|.|.|.|+|+|+ |..+......+.... ..+.|.|.+++.+|+|.|+|.|.|..|
T Consensus 1 G~~v~l~C~v-~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G 79 (90)
T cd04974 1 GSDVEFHCKV-YSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIG 79 (90)
T ss_pred CCcEEEEEEE-eCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccC
Confidence 7899999999 8999999999996 344422222221111 135799999999999999999999999
Q ss_pred eeeeEeEEEEEE
Q psy574 86 TRESTDAVLRVL 97 (977)
Q Consensus 86 ~~~s~~~~l~V~ 97 (977)
.. +..+.|.|.
T Consensus 80 ~~-~~sa~L~V~ 90 (90)
T cd04974 80 PS-HHSAWLTVL 90 (90)
T ss_pred cc-cCCEEEEeC
Confidence 74 456777763
No 148
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.11 E-value=3.6e-10 Score=94.85 Aligned_cols=72 Identities=35% Similarity=0.689 Sum_probs=57.5
Q ss_pred EEEEEECCCCCCCCeEEEEeCCEEe-ecCCCceEEEe-cCcEEEEcCCCCCCCeEEEEEEEecCceeeeEeEEEEE
Q psy574 23 ALLECGPPRGHPEPTLVWKKNGHPI-DFENSKRLRLV-DGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRV 96 (977)
Q Consensus 23 v~L~C~~~~g~P~~~v~W~k~g~~l-~~~~~~r~~~~-~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V 96 (977)
++|.|.+ .|.|.|.|.|+|+|..+ ......|+.+. .++.|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus 1 a~l~C~~-~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~-~~~~~l~V 74 (75)
T cd05763 1 ARLECAA-TGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGSI-SANATLTV 74 (75)
T ss_pred CEeEeec-ccccCCEEEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCEE-EeeEEEEE
Confidence 4799999 89999999999998643 22334566554 35789999999999999999999999974 45677776
No 149
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.11 E-value=5.8e-10 Score=97.52 Aligned_cols=82 Identities=27% Similarity=0.483 Sum_probs=64.1
Q ss_pred EeCCCceEEeCCCeEEEEEEecccCceEEEEEE-CCeeCCC-CceEEecc----ceEEEccCccCCCeEEEEEEEeCCe-
Q psy574 103 IRGPKDTTVSASSIIVFECSVGGDAVLTVHWKR-LGSAMPE-DRMSVLPS----RSLQLSDVRLEDAGEYVCEAENAVG- 175 (977)
Q Consensus 103 ~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k-~~~~l~~-~~~~~~~~----~~L~I~~v~~~D~G~Y~C~a~n~~g- 175 (977)
...|.+..+..|+++.|.|.+.|.|. .+.|++ ++..+.. .++.+..+ .+|.|.+++.+|+|.|+|.|.|..|
T Consensus 4 ~v~p~~~~v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~ 82 (92)
T cd04977 4 DIVPSQGEISVGESKFFLCQVIGEPK-DISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGT 82 (92)
T ss_pred EEecCcEEECCCCeEEEEEEeEeeCC-eEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCC
Confidence 44567788999999999999999875 999998 4554433 44444322 4799999999999999999999865
Q ss_pred eEEEEEEEEE
Q psy574 176 KISASATLTV 185 (977)
Q Consensus 176 ~~~~~~~L~V 185 (977)
..++++.|.|
T Consensus 83 ~~~~sv~l~~ 92 (92)
T cd04977 83 ESEATVNLKI 92 (92)
T ss_pred cceeEEEEEC
Confidence 4677777764
No 150
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.11 E-value=3e-10 Score=99.31 Aligned_cols=79 Identities=25% Similarity=0.374 Sum_probs=65.3
Q ss_pred CceEEeCCCeEEEEEEecc-----cCceEEEEEECCeeCCC---CceEE-eccceEEEccCccCCCeEEEEEEEeCCeeE
Q psy574 107 KDTTVSASSIIVFECSVGG-----DAVLTVHWKRLGSAMPE---DRMSV-LPSRSLQLSDVRLEDAGEYVCEAENAVGKI 177 (977)
Q Consensus 107 ~~~~v~~G~~v~l~C~v~g-----~p~~~i~W~k~~~~l~~---~~~~~-~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~ 177 (977)
.+..+.+|+.+.|.|.+.| .|.+.|.|||++..+.. .+.++ ..++.|.|.++..+|+|.|+|.+.|..|..
T Consensus 7 ~~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~~~N~~g~~ 86 (94)
T cd05756 7 KKSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQKDLLWFLPAALEDSGLYTCVVRNSTYCM 86 (94)
T ss_pred eEEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeeecCCeEEEccCCcccCeEEEEEEcCCCccE
Confidence 4567889999999999988 68899999999876432 11222 246789999999999999999999999999
Q ss_pred EEEEEEEE
Q psy574 178 SASATLTV 185 (977)
Q Consensus 178 ~~~~~L~V 185 (977)
+..++|.|
T Consensus 87 ~~~~~L~v 94 (94)
T cd05756 87 KVSISLTV 94 (94)
T ss_pred EEEEEEEC
Confidence 88888875
No 151
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.11 E-value=3.8e-10 Score=94.71 Aligned_cols=70 Identities=39% Similarity=0.697 Sum_probs=58.3
Q ss_pred EEEEEEecccCceEEEEEECCeeC-CC---CceEEe-ccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEEe
Q psy574 117 IVFECSVGGDAVLTVHWKRLGSAM-PE---DRMSVL-PSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQ 186 (977)
Q Consensus 117 v~l~C~v~g~p~~~i~W~k~~~~l-~~---~~~~~~-~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~ 186 (977)
+.|.|.+.|.|.|.++|+|++... +. .++.+. .++.|.|.+++.+|+|.|+|.|.|..|..+..+.|.|.
T Consensus 1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V~ 75 (75)
T cd05763 1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTVL 75 (75)
T ss_pred CEeEeecccccCCEEEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEEC
Confidence 479999999999999999998642 22 234443 45689999999999999999999999999999999873
No 152
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.10 E-value=3.2e-10 Score=95.89 Aligned_cols=68 Identities=28% Similarity=0.516 Sum_probs=56.5
Q ss_pred CCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEec---CcEEEEcCCCCCCCeEEEEEEEecCceeeeE
Q psy574 20 GDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD---GTNLAIQDSRKTDDGRYQCVVKNVAGTREST 90 (977)
Q Consensus 20 G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~---~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~ 90 (977)
|++++|.|.+ .|.|.|.|.|+|++..+.. ..|+.+.. .+.|.|.+++.+|+|.|+|.|.|..|...+.
T Consensus 1 G~~v~l~C~~-~g~P~p~v~W~~~~~~~~~--~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~ 71 (78)
T cd05743 1 GETVEFTCVA-TGVPTPIINWRLNWGHVPD--SARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGI 71 (78)
T ss_pred CCEEEEEEEE-EEecCCEEEEEECCeECCC--CCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEec
Confidence 7899999999 8999999999999988843 23554432 2579999999999999999999999876543
No 153
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.09 E-value=5e-10 Score=94.32 Aligned_cols=73 Identities=41% Similarity=0.618 Sum_probs=61.2
Q ss_pred EEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCc-EEEEcCCCCCCCeEEEEEEEecCceeeeEeEEEEEE
Q psy574 23 ALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGT-NLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVL 97 (977)
Q Consensus 23 v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g-~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V~ 97 (977)
+.|.|.+ .|.|.|.|.|+|+++.+..+...++.+..++ .|.|.+++.+|.|.|+|.+.|..|..+ ..+.|.|.
T Consensus 1 ~~L~C~v-~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~-~~~~l~V~ 74 (76)
T cd05736 1 ASLRCHA-EGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDE-DISSLFVE 74 (76)
T ss_pred CEeEeEe-eecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcc-eEEEEEEE
Confidence 4799999 8999999999999999865555667766555 699999999999999999999998754 55677775
No 154
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.09 E-value=7.5e-10 Score=98.34 Aligned_cols=84 Identities=19% Similarity=0.251 Sum_probs=68.3
Q ss_pred CCeEEeCCCceEEeCCCeEEEEEEecccCce-EEEEEECCeeCCC---CceEEecc-------ceEEEccCcc-CCCeEE
Q psy574 99 KPYIIRGPKDTTVSASSIIVFECSVGGDAVL-TVHWKRLGSAMPE---DRMSVLPS-------RSLQLSDVRL-EDAGEY 166 (977)
Q Consensus 99 ~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~-~i~W~k~~~~l~~---~~~~~~~~-------~~L~I~~v~~-~D~G~Y 166 (977)
||.+ ..+....+.+|+++.|.|.+.|.|.| .|.|++++..+.. .++.+... ..|.|.++.. +|.|.|
T Consensus 2 pp~i-~~~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y 80 (98)
T cd05758 2 PPII-TSEATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSY 80 (98)
T ss_pred CCeE-cCCCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeE
Confidence 4555 44667788999999999999999999 6999999988753 45655432 4799999998 558999
Q ss_pred EEEEEeCCeeEEEEEEE
Q psy574 167 VCEAENAVGKISASATL 183 (977)
Q Consensus 167 ~C~a~n~~g~~~~~~~L 183 (977)
+|.|.|..|.....+.|
T Consensus 81 ~C~A~N~~G~~~~~~~L 97 (98)
T cd05758 81 NCTAWNSFGSGTAIISL 97 (98)
T ss_pred EEEEEcCCCcccEEEEe
Confidence 99999999988777765
No 155
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.09 E-value=5.6e-10 Score=94.38 Aligned_cols=71 Identities=25% Similarity=0.472 Sum_probs=59.0
Q ss_pred CCeEEEEEEecccCceEEEEEECCeeCCCC-ceEEe---ccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEE
Q psy574 114 SSIIVFECSVGGDAVLTVHWKRLGSAMPED-RMSVL---PSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLT 184 (977)
Q Consensus 114 G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~-~~~~~---~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~ 184 (977)
|+++.|.|.+.|.|.|.+.|++++..+... ++.+. ..+.|.|.++..+|+|.|+|.|.|..|.....+.+.
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~ 75 (78)
T cd05743 1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDGI 75 (78)
T ss_pred CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEecccEE
Confidence 789999999999999999999998887653 44443 236899999999999999999999999876555443
No 156
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.09 E-value=4.6e-10 Score=97.93 Aligned_cols=75 Identities=23% Similarity=0.408 Sum_probs=56.9
Q ss_pred CCcEEEEEECCCCCCCCeEEEEeC----CEEeecCCCceEEEec----------CcEEEEcCCCCCCCeEEEEEEEecCc
Q psy574 20 GDTALLECGPPRGHPEPTLVWKKN----GHPIDFENSKRLRLVD----------GTNLAIQDSRKTDDGRYQCVVKNVAG 85 (977)
Q Consensus 20 G~~v~L~C~~~~g~P~~~v~W~k~----g~~l~~~~~~r~~~~~----------~g~L~I~~v~~~D~G~Y~C~a~n~~g 85 (977)
|++++|.|.+ .|.|.|.|.|+|+ |..+..+...+..+.. .+.|.|.+++.+|+|.|+|+|.|..|
T Consensus 1 G~~v~L~C~~-~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G 79 (90)
T cd05858 1 GSTVEFVCKV-YSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIG 79 (90)
T ss_pred CCeEEEEEEE-ecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCC
Confidence 7899999999 8999999999984 5555333222222211 14799999999999999999999999
Q ss_pred eeeeEeEEEEE
Q psy574 86 TRESTDAVLRV 96 (977)
Q Consensus 86 ~~~s~~~~l~V 96 (977)
.. +..+.|.|
T Consensus 80 ~~-~~~a~L~V 89 (90)
T cd05858 80 IS-HHSAWLTV 89 (90)
T ss_pred cc-cceEEEEE
Confidence 74 45567766
No 157
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.08 E-value=5.1e-10 Score=94.78 Aligned_cols=63 Identities=25% Similarity=0.464 Sum_probs=50.7
Q ss_pred EEEECCCCCCCCeEEEEeCCEEeecCCCceEEEec--------CcEEEEcCCCCCCCeEEEEEEEecCceee
Q psy574 25 LECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD--------GTNLAIQDSRKTDDGRYQCVVKNVAGTRE 88 (977)
Q Consensus 25 L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~--------~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~ 88 (977)
|.|.+ .|.|.|.|+|+|||+.|......+..+.. .+.|.|.+++.+|+|.|+|+|.|..|...
T Consensus 3 i~~~v-~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~ 73 (81)
T cd04971 3 IPFTV-RGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDS 73 (81)
T ss_pred EEEEe-EeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCee
Confidence 68998 99999999999999999544322222221 35799999999999999999999999754
No 158
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.08 E-value=3.6e-10 Score=96.97 Aligned_cols=78 Identities=23% Similarity=0.466 Sum_probs=60.7
Q ss_pred eEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecCceeeeEeEEE
Q psy574 15 QRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVL 94 (977)
Q Consensus 15 ~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~~~l 94 (977)
+.+..|++++|.|.+ .+.|.|.+.|+|+|..+..... .......+.|.|.+++.+|+|.|+|.|.|..|.. ...+.|
T Consensus 4 ~~~~~G~~v~L~C~~-~g~p~p~i~W~k~~~~~~~~~~-~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~-~~~~~v 80 (82)
T cd05856 4 IARPVGSSVRLKCVA-SGNPRPDITWLKDNKPLTPTEI-GESRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEI-NATYKV 80 (82)
T ss_pred eeccCCCeEEEEEEe-eEeCCCcEEEEECCcCCcCCcc-ceecCceEEEEEccCChhhCEEEEEEEEcCCccE-EEEEEE
Confidence 557789999999999 8899999999999998843322 1122224679999999999999999999999864 344444
Q ss_pred E
Q psy574 95 R 95 (977)
Q Consensus 95 ~ 95 (977)
.
T Consensus 81 ~ 81 (82)
T cd05856 81 D 81 (82)
T ss_pred e
Confidence 4
No 159
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.08 E-value=6.6e-10 Score=91.04 Aligned_cols=63 Identities=24% Similarity=0.496 Sum_probs=51.8
Q ss_pred CCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecCceee
Q psy574 20 GDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRE 88 (977)
Q Consensus 20 G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~ 88 (977)
|++++|.|.+ .|.|.|.|.|+|+|+.+.. ..++.. .+..|.|.++. |+|.|+|.|.|..|...
T Consensus 1 G~~v~L~C~a-~G~P~P~v~W~k~g~~l~~--~~~~~~-~~~~L~i~~~~--d~G~Y~C~A~N~~G~~~ 63 (69)
T cd05739 1 GGSVNLTCVA-VGAPMPYVKWMKGGEELTK--EDEMPV-GRNVLELTNIY--ESANYTCVAISSLGMIE 63 (69)
T ss_pred CCeEEEEEEe-eecCCCEEEEEECCEECCC--ccceec-CccEEEEeccc--cCeeEEEEEEeCCCEEE
Confidence 7899999999 8999999999999998843 234433 34579999974 89999999999999754
No 160
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.08 E-value=4.7e-10 Score=93.67 Aligned_cols=63 Identities=24% Similarity=0.438 Sum_probs=49.9
Q ss_pred EEEECCCCCCCCeEEEEeCCEEeecCCCceEEE--e----cCcEEEEcCCCCCCCeEEEEEEEecCceee
Q psy574 25 LECGPPRGHPEPTLVWKKNGHPIDFENSKRLRL--V----DGTNLAIQDSRKTDDGRYQCVVKNVAGTRE 88 (977)
Q Consensus 25 L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~--~----~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~ 88 (977)
|.|.+ .|+|.|.|+|+|||+.|..+......+ . ..+.|.|.++..+|+|.|+|+|+|..|+..
T Consensus 3 i~~~v-~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~ 71 (79)
T cd05855 3 IPFTV-KGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDE 71 (79)
T ss_pred EEEEE-eEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccc
Confidence 68888 999999999999999995332111111 1 135799999999999999999999999744
No 161
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.08 E-value=3.3e-10 Score=98.72 Aligned_cols=73 Identities=38% Similarity=0.536 Sum_probs=58.1
Q ss_pred CCeEEEEEEecccCceEEEEEECC----eeCCC-C--ceEEe----------ccceEEEccCccCCCeEEEEEEEeCCee
Q psy574 114 SSIIVFECSVGGDAVLTVHWKRLG----SAMPE-D--RMSVL----------PSRSLQLSDVRLEDAGEYVCEAENAVGK 176 (977)
Q Consensus 114 G~~v~l~C~v~g~p~~~i~W~k~~----~~l~~-~--~~~~~----------~~~~L~I~~v~~~D~G~Y~C~a~n~~g~ 176 (977)
|++++|.|.+.|+|.|.|+|+|++ ..+.. + ..... ....|.|.+++.+|+|.|+|.|.|..|.
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP 80 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence 688999999999999999999963 22211 1 11111 2357999999999999999999999999
Q ss_pred EEEEEEEEEe
Q psy574 177 ISASATLTVQ 186 (977)
Q Consensus 177 ~~~~~~L~V~ 186 (977)
..+++.|.|.
T Consensus 81 ~~~sa~L~V~ 90 (90)
T cd04974 81 SHHSAWLTVL 90 (90)
T ss_pred ccCCEEEEeC
Confidence 9999999874
No 162
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.07 E-value=5.8e-10 Score=94.46 Aligned_cols=67 Identities=22% Similarity=0.300 Sum_probs=55.8
Q ss_pred EEEEEecccCceEEEEEECCeeCCCCceE-E--e--------ccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEE
Q psy574 118 VFECSVGGDAVLTVHWKRLGSAMPEDRMS-V--L--------PSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLT 184 (977)
Q Consensus 118 ~l~C~v~g~p~~~i~W~k~~~~l~~~~~~-~--~--------~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~ 184 (977)
.|.|.+.|.|.|.|+|+|+|..+..++.. . . ..+.|.|.+++.+|+|.|+|.|.|..|..++.+.|.
T Consensus 2 ~i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 79 (81)
T cd04971 2 CIPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH 79 (81)
T ss_pred eEEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence 37899999999999999999998754321 1 1 134799999999999999999999999988877765
No 163
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.07 E-value=6.6e-10 Score=91.11 Aligned_cols=67 Identities=22% Similarity=0.157 Sum_probs=53.5
Q ss_pred EEEEEEecccCceEEEEEECCeeCCCCce-EEeccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEE
Q psy574 117 IVFECSVGGDAVLTVHWKRLGSAMPEDRM-SVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATL 183 (977)
Q Consensus 117 v~l~C~v~g~p~~~i~W~k~~~~l~~~~~-~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L 183 (977)
+.|.|.+.|.|.|.+.|+|++.++..... ....+.+|.|.++..+|+|.|+|.|.|..........+
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i 68 (72)
T cd07702 1 YRLTPKVKAFPAPEVIWLKDGLPAAEKCSRYHVDGYSLVIKDVTEEDAGIYTILLGIKQYNLFKNLTI 68 (72)
T ss_pred CeEEeeEEEcCCCeEEEEECCEECCCCCcEEEeCCCEEEECcCCHHHCEEEEEEEEccccceEeeEEE
Confidence 46899999999999999999999865422 22355689999999999999999999986654444333
No 164
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.06 E-value=8.4e-10 Score=94.34 Aligned_cols=75 Identities=27% Similarity=0.530 Sum_probs=57.3
Q ss_pred CCcEEEEEECCCCCCCCeEEEEeCCE---E--eecC-CCceEEEecCcEEEEcCCCCCCCeEEEEEEEecCceeeeEeEE
Q psy574 20 GDTALLECGPPRGHPEPTLVWKKNGH---P--IDFE-NSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAV 93 (977)
Q Consensus 20 G~~v~L~C~~~~g~P~~~v~W~k~g~---~--l~~~-~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~~~ 93 (977)
|++++|.|.+ .|.|.|.|.|+|++. . +... ...++.....+.|.|.+++.+|+|.|+|.|.|..|... ..+.
T Consensus 1 G~~v~l~C~~-~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~-~~~~ 78 (81)
T cd05765 1 GETASFHCDV-TGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLLR-ANFP 78 (81)
T ss_pred CCcEEEEeec-cccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCceEE-EEEE
Confidence 7899999999 899999999999732 1 1111 12344555567899999999999999999999999744 4556
Q ss_pred EEE
Q psy574 94 LRV 96 (977)
Q Consensus 94 l~V 96 (977)
|.|
T Consensus 79 l~v 81 (81)
T cd05765 79 LSV 81 (81)
T ss_pred EeC
Confidence 554
No 165
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.06 E-value=4.3e-10 Score=94.42 Aligned_cols=77 Identities=19% Similarity=0.374 Sum_probs=62.7
Q ss_pred CeEEeCCCceEEeCCCeEEEEEEecccCc-eEEEEEECCeeCCCCceEEeccceEEEccCccCCCeEEEEEEEeCCeeEE
Q psy574 100 PYIIRGPKDTTVSASSIIVFECSVGGDAV-LTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKIS 178 (977)
Q Consensus 100 P~~~~~p~~~~v~~G~~v~l~C~v~g~p~-~~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~ 178 (977)
|.+...|....+.+|++++|.|.+.+.|. ..+.|+||+..+.. ....|.|.++ .+|+|.|+|.|.|. ..+
T Consensus 1 ~vv~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~------~~~~l~i~~~-~~dsG~Y~C~a~~~--~~S 71 (78)
T cd05752 1 AVVSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLET------TTNSYRIRAA-NNDSGEYRCQTQGS--SLS 71 (78)
T ss_pred CeEEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeec------cCCeEEEeec-ccCCEEeEEECCCC--cCC
Confidence 45677888899999999999999988775 46999999988732 4578999999 99999999999875 445
Q ss_pred EEEEEEE
Q psy574 179 ASATLTV 185 (977)
Q Consensus 179 ~~~~L~V 185 (977)
..+.|+|
T Consensus 72 ~~v~l~V 78 (78)
T cd05752 72 DPVHLEV 78 (78)
T ss_pred CCEEEeC
Confidence 5555544
No 166
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.05 E-value=8.7e-10 Score=94.25 Aligned_cols=72 Identities=26% Similarity=0.457 Sum_probs=59.1
Q ss_pred CCeEEEEEEecccCceEEEEEECCe---e--CCC----CceEEeccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEE
Q psy574 114 SSIIVFECSVGGDAVLTVHWKRLGS---A--MPE----DRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLT 184 (977)
Q Consensus 114 G~~v~l~C~v~g~p~~~i~W~k~~~---~--l~~----~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~ 184 (977)
|+++.|.|.+.|.|.|.+.|+|++. . +.. .++.....+.|.|.+++.+|+|.|+|.|.|..|.....+.|.
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 80 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRANFPLS 80 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCceEEEEEEEe
Confidence 7899999999999999999999742 1 111 123333557899999999999999999999999999999887
Q ss_pred E
Q psy574 185 V 185 (977)
Q Consensus 185 V 185 (977)
|
T Consensus 81 v 81 (81)
T cd05765 81 V 81 (81)
T ss_pred C
Confidence 6
No 167
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.05 E-value=1.1e-09 Score=95.75 Aligned_cols=83 Identities=24% Similarity=0.531 Sum_probs=61.1
Q ss_pred cccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeec------CCCceEEEec----CcEEEEcCCCCCCCeEEEEEE
Q psy574 11 QPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDF------ENSKRLRLVD----GTNLAIQDSRKTDDGRYQCVV 80 (977)
Q Consensus 11 ~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~------~~~~r~~~~~----~g~L~I~~v~~~D~G~Y~C~a 80 (977)
...++.+.+|++++|.|.+ .+.|.+.|.|+|++..+-. -.+.|+.+.. +.+|.|.+++.+|+|.|+|.+
T Consensus 3 ~~~~~tv~~G~tv~L~C~v-~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~ 81 (95)
T cd05882 3 VTQDETVAVGGTVTLKCGV-KEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSI 81 (95)
T ss_pred ccccEEEecCCcEEEEEEE-eCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEE
Confidence 3467899999999999999 8899999999997754311 1234665432 358999999999999999999
Q ss_pred EecCceeeeEeEEEEE
Q psy574 81 KNVAGTRESTDAVLRV 96 (977)
Q Consensus 81 ~n~~g~~~s~~~~l~V 96 (977)
.... ..++.+.|+|
T Consensus 82 ~t~~--~~~~~~~~~v 95 (95)
T cd05882 82 FTMP--VRTAKATVTV 95 (95)
T ss_pred Eeec--cccEEEEEEC
Confidence 8632 2234445543
No 168
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.02 E-value=1.2e-09 Score=95.39 Aligned_cols=72 Identities=40% Similarity=0.580 Sum_probs=57.6
Q ss_pred CCeEEEEEEecccCceEEEEEEC----CeeCCC-Cc--eEEe----------ccceEEEccCccCCCeEEEEEEEeCCee
Q psy574 114 SSIIVFECSVGGDAVLTVHWKRL----GSAMPE-DR--MSVL----------PSRSLQLSDVRLEDAGEYVCEAENAVGK 176 (977)
Q Consensus 114 G~~v~l~C~v~g~p~~~i~W~k~----~~~l~~-~~--~~~~----------~~~~L~I~~v~~~D~G~Y~C~a~n~~g~ 176 (977)
|+++.|.|.+.|.|.|.|.|+|+ +..+.. +. ..+. ....|.|.+++.+|+|.|+|.|.|..|.
T Consensus 1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd05858 1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI 80 (90)
T ss_pred CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence 78999999999999999999995 333321 11 1111 1147999999999999999999999999
Q ss_pred EEEEEEEEE
Q psy574 177 ISASATLTV 185 (977)
Q Consensus 177 ~~~~~~L~V 185 (977)
..+++.|.|
T Consensus 81 ~~~~a~L~V 89 (90)
T cd05858 81 SHHSAWLTV 89 (90)
T ss_pred ccceEEEEE
Confidence 999999987
No 169
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.02 E-value=1e-09 Score=93.13 Aligned_cols=69 Identities=35% Similarity=0.531 Sum_probs=56.1
Q ss_pred EEEEEEecccCceEEEEEECCeeC---------CCCceEEeccceEEEccCccCCCeEEEEEEEeCCeeE-EEEEEEEE
Q psy574 117 IVFECSVGGDAVLTVHWKRLGSAM---------PEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKI-SASATLTV 185 (977)
Q Consensus 117 v~l~C~v~g~p~~~i~W~k~~~~l---------~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~-~~~~~L~V 185 (977)
++|.|.+.|.|.|.+.|+|++... ..+++.+..+++|.|.++..+|+|.|+|.|.|..|.. ++.+.|+|
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l~~ 79 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVLTV 79 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEecCCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEEeC
Confidence 579999999999999999975421 2345555577899999999999999999999999974 66677664
No 170
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.02 E-value=1e-09 Score=91.03 Aligned_cols=69 Identities=30% Similarity=0.585 Sum_probs=54.8
Q ss_pred EEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEE-ecCcEEEEcCCCCCCCeEEEEEEEecCceeeeEeEEEEE
Q psy574 23 ALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRL-VDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRV 96 (977)
Q Consensus 23 v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~-~~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V 96 (977)
++|.|.+ .|.|.|.+.|+|++..+.. . +... ..++.|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus 1 v~l~C~~-~g~P~p~v~W~k~~~~~~~-~--~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~V 70 (71)
T cd05731 1 LLLECIA-EGLPTPEISWIKIGGELPA-D--RTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGSA-RHTISVTV 70 (71)
T ss_pred CEEEEEe-eEecCCeEEEEECCeECCC-C--ceeEecCCCEEEECCCCHHHCEEEEEEEEeCCceE-EEEEEEEE
Confidence 5799999 8999999999999988732 2 2222 235689999999999999999999999864 34556655
No 171
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=99.01 E-value=1.8e-09 Score=93.72 Aligned_cols=71 Identities=23% Similarity=0.431 Sum_probs=56.8
Q ss_pred ceEEeCCCcEEEEEECCCC----CCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecCcee
Q psy574 14 SQRVAAGDTALLECGPPRG----HPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTR 87 (977)
Q Consensus 14 ~~~v~~G~~v~L~C~~~~g----~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~ 87 (977)
.+.+.+|+++.|.|....+ +|.+.|.|+||++++... ..+ +..++.|.|.+++.+|+|.|+|++.|..+..
T Consensus 4 ~~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~-~~~--~~~~~~L~I~~v~~~DsG~YtC~~~n~~~~~ 78 (92)
T cd05757 4 KQILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGD-RKR--FVKGSKLLIQNVTEEDAGNYTCKLTFTHNGK 78 (92)
T ss_pred eEEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCC-ccE--EecCCEEEEeeCChhhCEEEEEEEEecCCCE
Confidence 3678999999999976322 367899999999999532 222 2367899999999999999999999987653
No 172
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.00 E-value=3.2e-09 Score=90.42 Aligned_cols=69 Identities=22% Similarity=0.362 Sum_probs=57.9
Q ss_pred CCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCC-ceEEeccceEEEccCccCCCeEEEEEEEeCC
Q psy574 105 GPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED-RMSVLPSRSLQLSDVRLEDAGEYVCEAENAV 174 (977)
Q Consensus 105 ~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~-~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~ 174 (977)
.|.+..+..|+++.|.|.+.+ +.+.|.|++|+..+..+ ......++.|.|.+++.+|+|.|+|.|.+..
T Consensus 2 ~P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~~r~~~~~~~L~I~nv~~~DsG~Y~C~a~e~~ 71 (87)
T cd05873 2 DPRQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPESAKYLLYRDGLLIFNASEADAGRYQCLSVEKS 71 (87)
T ss_pred CcceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCCceEEEECCcEEEeCCCHHHCEEEEEEEEecc
Confidence 467889999999999999864 67899999999998754 2223466789999999999999999999863
No 173
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.00 E-value=3.1e-09 Score=92.96 Aligned_cols=78 Identities=28% Similarity=0.508 Sum_probs=63.1
Q ss_pred CeEEeCCCceEEeC---CCeEEEEEEecccCceEEEEEECCeeCCC---CceEEeccceEEEccCc-cCCCeEEEEEEEe
Q psy574 100 PYIIRGPKDTTVSA---SSIIVFECSVGGDAVLTVHWKRLGSAMPE---DRMSVLPSRSLQLSDVR-LEDAGEYVCEAEN 172 (977)
Q Consensus 100 P~~~~~p~~~~v~~---G~~v~l~C~v~g~p~~~i~W~k~~~~l~~---~~~~~~~~~~L~I~~v~-~~D~G~Y~C~a~n 172 (977)
|.|...|.+..+.+ |+.+.|.|.+.|+|.+.|+|+|++..+.. .++ ...++.|.|.++. .+|+|.|+|.|.|
T Consensus 2 P~f~~~p~~~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~-~~~~~~L~i~~~~~~~d~G~Y~C~a~N 80 (91)
T cd04967 2 PVFEEQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRY-SLVGGNLVISNPSKAKDAGRYQCLASN 80 (91)
T ss_pred CeeEeCCCCEEccCCCCCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCE-EEECCEEEEecCCccCCCEEEEEEEEc
Confidence 67788888876654 46799999999999999999999998842 233 2356789999887 5899999999999
Q ss_pred CCeeEE
Q psy574 173 AVGKIS 178 (977)
Q Consensus 173 ~~g~~~ 178 (977)
..|...
T Consensus 81 ~~G~~~ 86 (91)
T cd04967 81 IVGTVL 86 (91)
T ss_pred CCCEEE
Confidence 999754
No 174
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=98.99 E-value=2.9e-09 Score=91.88 Aligned_cols=79 Identities=29% Similarity=0.573 Sum_probs=66.4
Q ss_pred EeCCCceEEeCCCeEEEEEEecc-cCceEEEEEECCeeCCCCceEEeccceEEEccCccCCCeEEEEEEEeCCeeEEEEE
Q psy574 103 IRGPKDTTVSASSIIVFECSVGG-DAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASA 181 (977)
Q Consensus 103 ~~~p~~~~v~~G~~v~l~C~v~g-~p~~~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~ 181 (977)
+..|....+.+|++++|.|.+.+ .|.+.+.|++++..++.. ....++.|.|.+++.+|+|.|+|.|.|..|..++.+
T Consensus 5 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~--~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~ 82 (85)
T cd05754 5 VEEPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSR--AMDFNGILTIRNVQLSDAGTYVCTGSNMLDTDEATA 82 (85)
T ss_pred ecCCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCc--ccccCCEEEECCCCHHHCEEEEEEEeccCCeEeEEE
Confidence 44677778999999999999964 788899999998776542 223467899999999999999999999999988877
Q ss_pred EE
Q psy574 182 TL 183 (977)
Q Consensus 182 ~L 183 (977)
.|
T Consensus 83 ~l 84 (85)
T cd05754 83 TL 84 (85)
T ss_pred EE
Confidence 76
No 175
>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []. They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....
Probab=98.98 E-value=3.7e-09 Score=91.26 Aligned_cols=81 Identities=26% Similarity=0.394 Sum_probs=69.0
Q ss_pred EEEEEeeEeCCCeEEEEEEec--CCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeecce
Q psy574 547 IELTEVKPMTSTSVKLTWEIL--NTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSV 624 (977)
Q Consensus 547 ~~~l~~~~~~~tsv~lsW~~p--~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g 624 (977)
|.++++..++.++|.|+|+++ .++.+.+|.|+|+.......+....+. .....++|.+|+|++.|.|+|+|.+..|
T Consensus 3 P~~l~v~~~~~~sv~v~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~--~~~~~~~i~~L~p~t~Y~~~v~a~~~~g 80 (85)
T PF00041_consen 3 PENLSVSNISPTSVTVSWKPPSSGNGPITGYRVEYRSVNSTSDWQEVTVP--GNETSYTITGLQPGTTYEFRVRAVNSDG 80 (85)
T ss_dssp SEEEEEEEECSSEEEEEEEESSSTSSSESEEEEEEEETTSSSEEEEEEEE--TTSSEEEEESCCTTSEEEEEEEEEETTE
T ss_pred CcCeEEEECCCCEEEEEEECCCCCCCCeeEEEEEEEecccceeeeeeeee--eeeeeeeeccCCCCCEEEEEEEEEeCCc
Confidence 478999999999999999999 588999999999988865445544443 4566999999999999999999999999
Q ss_pred eCCCC
Q psy574 625 DGKPS 629 (977)
Q Consensus 625 ~g~~s 629 (977)
.|++|
T Consensus 81 ~g~~S 85 (85)
T PF00041_consen 81 EGPPS 85 (85)
T ss_dssp EEEEE
T ss_pred CcCCC
Confidence 88654
No 176
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=98.98 E-value=2.5e-09 Score=92.25 Aligned_cols=75 Identities=29% Similarity=0.463 Sum_probs=61.6
Q ss_pred eecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecCceee
Q psy574 9 RVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRE 88 (977)
Q Consensus 9 ~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~ 88 (977)
...|..+.+.+|++++|.|.+..+.|.+.|.|+|++..+.. +. ...++.|.|.+++.+|+|.|+|.|.|..|...
T Consensus 5 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~----~~-~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~ 79 (85)
T cd05754 5 VEEPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPS----RA-MDFNGILTIRNVQLSDAGTYVCTGSNMLDTDE 79 (85)
T ss_pred ecCCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCC----cc-cccCCEEEECCCCHHHCEEEEEEEeccCCeEe
Confidence 34677889999999999999844578899999999877632 11 23468899999999999999999999988754
No 177
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=98.97 E-value=3e-09 Score=89.55 Aligned_cols=70 Identities=26% Similarity=0.547 Sum_probs=59.6
Q ss_pred EEEEEEecccCceEEEEEECCeeCCCC---ceEEecc-ceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEEe
Q psy574 117 IVFECSVGGDAVLTVHWKRLGSAMPED---RMSVLPS-RSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQ 186 (977)
Q Consensus 117 v~l~C~v~g~p~~~i~W~k~~~~l~~~---~~~~~~~-~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~ 186 (977)
+.|.|.+.|.|.|.+.|+|++..+..+ ++.+..+ ..|.|.++..+|.|.|+|.|.|..|..+..+.|.|.
T Consensus 1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 74 (76)
T cd05736 1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE 74 (76)
T ss_pred CEeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence 468999999999999999999887543 3444433 479999999999999999999999999999999885
No 178
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=98.94 E-value=4.2e-09 Score=90.57 Aligned_cols=73 Identities=19% Similarity=0.412 Sum_probs=58.9
Q ss_pred CCeEEEEEEeccc--CceEEEEEECCeeCCCCce----EE-----eccceEEEccCccCCCeEEEEEEEeCCeeEEEEEE
Q psy574 114 SSIIVFECSVGGD--AVLTVHWKRLGSAMPEDRM----SV-----LPSRSLQLSDVRLEDAGEYVCEAENAVGKISASAT 182 (977)
Q Consensus 114 G~~v~l~C~v~g~--p~~~i~W~k~~~~l~~~~~----~~-----~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~ 182 (977)
|+++.|.|.+.|. |.+.+.|++++..+..... .. .....|.|.+++.+|+|.|+|.|.|..+..++++.
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~ 80 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTK 80 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEE
Confidence 7899999999998 8899999998765532110 01 12358999999999999999999999999888888
Q ss_pred EEEe
Q psy574 183 LTVQ 186 (977)
Q Consensus 183 L~V~ 186 (977)
|.|+
T Consensus 81 v~v~ 84 (84)
T cd05742 81 VNIH 84 (84)
T ss_pred EEEC
Confidence 8763
No 179
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=98.93 E-value=3.8e-09 Score=88.85 Aligned_cols=66 Identities=26% Similarity=0.577 Sum_probs=51.9
Q ss_pred EEEEEECCCCCCCCeEEEEeCCEEeecCC--CceEEEec---CcEEEEcCCCCCCCeEEEEEEEecCceee
Q psy574 23 ALLECGPPRGHPEPTLVWKKNGHPIDFEN--SKRLRLVD---GTNLAIQDSRKTDDGRYQCVVKNVAGTRE 88 (977)
Q Consensus 23 v~L~C~~~~g~P~~~v~W~k~g~~l~~~~--~~r~~~~~---~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~ 88 (977)
+.|.|.+..+.|.+.+.|+|||+.+.... ..++.+.. .+.|.|.+++.+|+|.|+|+|.|..|...
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~ 71 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDS 71 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCcee
Confidence 47999985567889999999999985432 23444432 35799999999999999999999988643
No 180
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=98.92 E-value=7.3e-09 Score=90.17 Aligned_cols=80 Identities=26% Similarity=0.385 Sum_probs=63.7
Q ss_pred CCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCC-----ceEEeccceEEEccCccCCCeEEEEEEEeCCe-eEE
Q psy574 105 GPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED-----RMSVLPSRSLQLSDVRLEDAGEYVCEAENAVG-KIS 178 (977)
Q Consensus 105 ~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~-----~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g-~~~ 178 (977)
.|..+.+.+|+++.|.|.+.+ |.+.+.|+|++..+... ++.. ....|.|.+++.+|+|.|+|.|.+..+ ...
T Consensus 2 ~~~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~-~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~ 79 (89)
T cd04979 2 EEKVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLV-TEDGLLIRSVSPADAGVYTCQSVEHGFKQTL 79 (89)
T ss_pred cceEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEE-cCCCEEEccCCHHHCEEEEEEEecCccceeE
Confidence 356678899999999999987 77899999998876543 3333 445699999999999999999997654 466
Q ss_pred EEEEEEEe
Q psy574 179 ASATLTVQ 186 (977)
Q Consensus 179 ~~~~L~V~ 186 (977)
+...|.|.
T Consensus 80 ~~~~l~V~ 87 (89)
T cd04979 80 ATYSLNVL 87 (89)
T ss_pred eEEEEEEe
Confidence 77777775
No 181
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=98.92 E-value=6.5e-09 Score=87.34 Aligned_cols=62 Identities=32% Similarity=0.547 Sum_probs=49.9
Q ss_pred EEEEEEecccCceEEEEEECCeeCC---CCceEEe-ccceEEEccCc----cCCCeEEEEEEEeCCeeEE
Q psy574 117 IVFECSVGGDAVLTVHWKRLGSAMP---EDRMSVL-PSRSLQLSDVR----LEDAGEYVCEAENAVGKIS 178 (977)
Q Consensus 117 v~l~C~v~g~p~~~i~W~k~~~~l~---~~~~~~~-~~~~L~I~~v~----~~D~G~Y~C~a~n~~g~~~ 178 (977)
+.|.|.+.|+|.|.|+|+|++..+. ..++.+. .+++|.|..+. .+|+|.|+|.|.|..|...
T Consensus 1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~ 70 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTAL 70 (77)
T ss_pred CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEE
Confidence 4699999999999999999998763 3445443 56899998874 2479999999999999743
No 182
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=98.91 E-value=6.1e-09 Score=90.42 Aligned_cols=78 Identities=19% Similarity=0.272 Sum_probs=63.0
Q ss_pred ceEEeCCCeEEEEEEecc-----cCceEEEEEECCeeCCCCceEEeccceEEEccCccCCCeEEEEEEEeCCeeEEEEEE
Q psy574 108 DTTVSASSIIVFECSVGG-----DAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASAT 182 (977)
Q Consensus 108 ~~~v~~G~~v~l~C~v~g-----~p~~~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~ 182 (977)
.+.+.+|+++.|.|...+ +|.+.+.|+|++.++...+..+..++.|.|.++..+|+|.|+|.|.|..+.....+.
T Consensus 4 ~~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~~~~~~L~I~~v~~~DsG~YtC~~~n~~~~~~~~~t 83 (92)
T cd05757 4 KQILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRFVKGSKLLIQNVTEEDAGNYTCKLTFTHNGKQYNVT 83 (92)
T ss_pred eEEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEEecCCEEEEeeCChhhCEEEEEEEEecCCCEEEEEE
Confidence 457889999999998743 257899999999999876655557789999999999999999999998776554444
Q ss_pred EEE
Q psy574 183 LTV 185 (977)
Q Consensus 183 L~V 185 (977)
.++
T Consensus 84 ~t~ 86 (92)
T cd05757 84 RTI 86 (92)
T ss_pred EEE
Confidence 433
No 183
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=98.90 E-value=4e-09 Score=88.62 Aligned_cols=66 Identities=26% Similarity=0.555 Sum_probs=53.9
Q ss_pred EEEEEEecc-cCceEEEEEECCeeCCCCce-E---Ee---ccceEEEccCccCCCeEEEEEEEeCCeeEEEEEE
Q psy574 117 IVFECSVGG-DAVLTVHWKRLGSAMPEDRM-S---VL---PSRSLQLSDVRLEDAGEYVCEAENAVGKISASAT 182 (977)
Q Consensus 117 v~l~C~v~g-~p~~~i~W~k~~~~l~~~~~-~---~~---~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~ 182 (977)
+.|.|.+.| .|.+.+.|+|++..+..... . +. ....|.|.++..+|+|.|+|.|.|..|.....++
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 74 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTAN 74 (75)
T ss_pred CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence 469999988 99999999999988864321 1 21 2468999999999999999999999998776654
No 184
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=98.90 E-value=5.4e-09 Score=88.03 Aligned_cols=67 Identities=28% Similarity=0.527 Sum_probs=52.6
Q ss_pred EEEEEEecccCceEEEEEECCeeCCC---CceEEe-ccceEEEccCcc----CCCeEEEEEEEeCCeeEE-EEEEE
Q psy574 117 IVFECSVGGDAVLTVHWKRLGSAMPE---DRMSVL-PSRSLQLSDVRL----EDAGEYVCEAENAVGKIS-ASATL 183 (977)
Q Consensus 117 v~l~C~v~g~p~~~i~W~k~~~~l~~---~~~~~~-~~~~L~I~~v~~----~D~G~Y~C~a~n~~g~~~-~~~~L 183 (977)
+.|.|.+.|.|.|.|+|+|++..+.. .++.+. .++.|.|.++.. +|+|.|+|.|.|..|... ..+.|
T Consensus 1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~l 76 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAISNEIHL 76 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEccccEE
Confidence 47999999999999999999988743 234333 468999998854 789999999999999743 34443
No 185
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=98.89 E-value=1.1e-08 Score=89.91 Aligned_cols=79 Identities=25% Similarity=0.471 Sum_probs=61.7
Q ss_pred CCceEEeCCCeEEEEEEecccCceEEEEEECC--------e-eCCCCceEEe----ccceEEEccCccCCCeEEEEEEEe
Q psy574 106 PKDTTVSASSIIVFECSVGGDAVLTVHWKRLG--------S-AMPEDRMSVL----PSRSLQLSDVRLEDAGEYVCEAEN 172 (977)
Q Consensus 106 p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~--------~-~l~~~~~~~~----~~~~L~I~~v~~~D~G~Y~C~a~n 172 (977)
+.++.+.+|+++.|.|.+.+.|.+.+.|++.+ . .+..+|+... .+.+|.|.+++.+|+|.|+|.+.+
T Consensus 4 ~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t 83 (95)
T cd07701 4 TQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFT 83 (95)
T ss_pred cceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEe
Confidence 56788999999999999999999999998632 1 2344566553 336899999999999999999987
Q ss_pred CCeeEEEEEEEEE
Q psy574 173 AVGKISASATLTV 185 (977)
Q Consensus 173 ~~g~~~~~~~L~V 185 (977)
.. ..+..+.|+|
T Consensus 84 ~~-~~~~~~~l~v 95 (95)
T cd07701 84 MP-VKTSKAYLTV 95 (95)
T ss_pred ec-CccEEEEEEC
Confidence 53 3466777765
No 186
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=98.89 E-value=9.9e-09 Score=86.22 Aligned_cols=67 Identities=21% Similarity=0.425 Sum_probs=51.8
Q ss_pred EEEEEEecccCceEEEEEECCeeCCC---CceEEe-ccceEEEccCcc----CCCeEEEEEEEeCCeeEEE-EEEE
Q psy574 117 IVFECSVGGDAVLTVHWKRLGSAMPE---DRMSVL-PSRSLQLSDVRL----EDAGEYVCEAENAVGKISA-SATL 183 (977)
Q Consensus 117 v~l~C~v~g~p~~~i~W~k~~~~l~~---~~~~~~-~~~~L~I~~v~~----~D~G~Y~C~a~n~~g~~~~-~~~L 183 (977)
+.|.|.+.|.|.|+|+|+|++..+.. .++.+. .+++|.|..+.. .|+|.|+|.|.|..|...+ .+.|
T Consensus 1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~~ 76 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVSNNIVI 76 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEeeEEEE
Confidence 47999999999999999999988632 233333 468899988874 3789999999999997443 4433
No 187
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=98.89 E-value=1.2e-08 Score=87.51 Aligned_cols=77 Identities=17% Similarity=0.374 Sum_probs=56.8
Q ss_pred CCcEEEEEECCCCCCCCeEEEEeCCEEeecCCC--ceEEEec---CcEEEEcCCCCCCCeEEEEEEEecCc-eeeeEeEE
Q psy574 20 GDTALLECGPPRGHPEPTLVWKKNGHPIDFENS--KRLRLVD---GTNLAIQDSRKTDDGRYQCVVKNVAG-TRESTDAV 93 (977)
Q Consensus 20 G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~--~r~~~~~---~g~L~I~~v~~~D~G~Y~C~a~n~~g-~~~s~~~~ 93 (977)
|++++|.|.+ .+.|.+.+.|+++++....... .+..+.. ...|.|.+++.+|+|.|.|.|.|..+ ...+..+.
T Consensus 1 Ge~~~l~C~~-~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~ 79 (84)
T cd05861 1 GETITVNCIV-QGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVN 79 (84)
T ss_pred CCcEEEEEEE-ECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEE
Confidence 8999999999 7889999999997764321111 1222221 34799999999999999999998754 34567777
Q ss_pred EEEE
Q psy574 94 LRVL 97 (977)
Q Consensus 94 l~V~ 97 (977)
|+|.
T Consensus 80 i~V~ 83 (84)
T cd05861 80 ITVH 83 (84)
T ss_pred EEEe
Confidence 7775
No 188
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=98.87 E-value=7e-09 Score=87.12 Aligned_cols=65 Identities=28% Similarity=0.653 Sum_probs=51.6
Q ss_pred EEEEEECCCC-CCCCeEEEEeCCEEeecCCCce-EEEe---cCcEEEEcCCCCCCCeEEEEEEEecCceee
Q psy574 23 ALLECGPPRG-HPEPTLVWKKNGHPIDFENSKR-LRLV---DGTNLAIQDSRKTDDGRYQCVVKNVAGTRE 88 (977)
Q Consensus 23 v~L~C~~~~g-~P~~~v~W~k~g~~l~~~~~~r-~~~~---~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~ 88 (977)
++|.|.+ .| .|.+.+.|+|||+.+......+ +.+. ..+.|.|.+++.+|+|.|+|.|.|..|...
T Consensus 1 ~~l~C~~-~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~ 70 (75)
T cd05750 1 LVLKCEA-TSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDT 70 (75)
T ss_pred CEEEEEc-cCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCcee
Confidence 4799999 56 9999999999999996443322 2232 235799999999999999999999998743
No 189
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=98.87 E-value=1.9e-08 Score=87.90 Aligned_cols=87 Identities=21% Similarity=0.301 Sum_probs=65.6
Q ss_pred CCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCC---ccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEc
Q psy574 196 SDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGD---RVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVN 272 (977)
Q Consensus 196 ~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~---~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n 272 (977)
.+..+.+|+++.|.|.+.+.|.+.+.|++++..+...... ...|+.+.....+...|.|.+++.+|+|.|+ |.+..
T Consensus 5 ~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~Yt-C~~~t 83 (95)
T cd05882 5 QDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYT-CSIFT 83 (95)
T ss_pred ccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEE-EEEEe
Confidence 5678999999999999999999999999988754322211 2356665544334569999999999999999 99988
Q ss_pred CCCceeEEEEEE
Q psy574 273 AAGSDLARASLT 284 (977)
Q Consensus 273 ~~g~~~~~~~l~ 284 (977)
.....+.+.|.
T Consensus 84 -~~~~~~~~~~~ 94 (95)
T cd05882 84 -MPVRTAKATVT 94 (95)
T ss_pred -eccccEEEEEE
Confidence 44555555554
No 190
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=98.86 E-value=2.2e-08 Score=86.91 Aligned_cols=80 Identities=20% Similarity=0.402 Sum_probs=58.4
Q ss_pred ceEEeCCCcEEEEEECCCCCCCCeEEEEeC--CEEee--cCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEe-cCceee
Q psy574 14 SQRVAAGDTALLECGPPRGHPEPTLVWKKN--GHPID--FENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKN-VAGTRE 88 (977)
Q Consensus 14 ~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~--g~~l~--~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n-~~g~~~ 88 (977)
.+.+.+|++++|.|.. +.|.+.|.|+|+ +.... .....|+... ++.|.|.+++++|+|.|+|.+.+ ..+. .
T Consensus 5 ~~~~~eG~~v~L~C~~--~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~-~~~L~I~~~~~~DsG~Y~C~a~~~~~~~-~ 80 (91)
T cd05871 5 VVYGVENNSTFLECLP--KSPQASVKWLFQRGGDQRKEEVKTEERLIHT-ERGLLLRSLQRSDAGVYTCTAVEHSFSQ-T 80 (91)
T ss_pred EEEEecCCcEEEEEEC--CCCCceEEEEEECCCCCccccccccccEEEe-cCeEEEeeCChhHCEEEEEEEEccCCeE-E
Confidence 4678999999999996 478899999983 32221 1123466554 56799999999999999999985 4443 3
Q ss_pred eEeEEEEEE
Q psy574 89 STDAVLRVL 97 (977)
Q Consensus 89 s~~~~l~V~ 97 (977)
...+.|+|.
T Consensus 81 ~~~~~l~v~ 89 (91)
T cd05871 81 LAKYTLHVI 89 (91)
T ss_pred EEEEEEEEe
Confidence 446677765
No 191
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=98.86 E-value=1.1e-08 Score=86.99 Aligned_cols=79 Identities=34% Similarity=0.635 Sum_probs=63.6
Q ss_pred ccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecCc
Q psy574 6 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAG 85 (977)
Q Consensus 6 ~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g 85 (977)
|.+..++ ..+.+|+.++|.|.+ .+.|...+.|++++..+... ...|.|.++..+|.|.|+|.+.+..+
T Consensus 2 P~l~~~~--~~v~~g~~~~l~C~~-~~~p~~~~~w~~~~~~~~~~---------~~~~~~~~~~~~~~g~y~C~~~~~~~ 69 (80)
T PF13895_consen 2 PVLSSSP--QSVEEGDSVTLTCSV-SGNPPPQVQWYKNGSPINSS---------QNGLFIPNVSPEDSGNYTCRASNGSG 69 (80)
T ss_dssp -EEEEES--SEEETTSEEEEEEEE-ESSSSSEEEEEETTEEEEEE---------SSEEEESSEEGGGTEEEEEEEEETTE
T ss_pred cEEEccc--eEEeCCCcEEEEEEE-Ecccceeeeeeeeeeeeeee---------eeeeeeeeeccccCEEEEEEEEeCCC
Confidence 4455444 679999999999999 68888999999999888422 12288899999999999999999877
Q ss_pred eeeeEeEEEEE
Q psy574 86 TRESTDAVLRV 96 (977)
Q Consensus 86 ~~~s~~~~l~V 96 (977)
...+..+.|+|
T Consensus 70 ~~~s~~~~v~V 80 (80)
T PF13895_consen 70 SNTSTSVNVTV 80 (80)
T ss_dssp EEEEEEEEEEE
T ss_pred CeEeeeEEeeC
Confidence 77777777765
No 192
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=98.86 E-value=2e-08 Score=86.10 Aligned_cols=73 Identities=25% Similarity=0.490 Sum_probs=57.2
Q ss_pred CCeEEEEEEecccCceEEEEEECCeeCCCC-----ceEEe---ccceEEEccCccCCCeEEEEEEEeCCe--eEEEEEEE
Q psy574 114 SSIIVFECSVGGDAVLTVHWKRLGSAMPED-----RMSVL---PSRSLQLSDVRLEDAGEYVCEAENAVG--KISASATL 183 (977)
Q Consensus 114 G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~-----~~~~~---~~~~L~I~~v~~~D~G~Y~C~a~n~~g--~~~~~~~L 183 (977)
|++++|.|.+.|.|.+.+.|+++++..... +..+. ...+|.|.+++.+|+|.|+|.|.|..+ ...+++.|
T Consensus 1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i 80 (84)
T cd05861 1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNI 80 (84)
T ss_pred CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEE
Confidence 789999999999999999999877543211 11111 245899999999999999999999766 57788888
Q ss_pred EEe
Q psy574 184 TVQ 186 (977)
Q Consensus 184 ~V~ 186 (977)
+|+
T Consensus 81 ~V~ 83 (84)
T cd05861 81 TVH 83 (84)
T ss_pred EEe
Confidence 875
No 193
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.86 E-value=2.2e-08 Score=88.86 Aligned_cols=87 Identities=21% Similarity=0.204 Sum_probs=65.6
Q ss_pred ceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCC-----EEee------------cCCCceEEEecCcEEEEcCCCC
Q psy574 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNG-----HPID------------FENSKRLRLVDGTNLAIQDSRK 70 (977)
Q Consensus 8 ~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g-----~~l~------------~~~~~r~~~~~~g~L~I~~v~~ 70 (977)
++++|.+..+.+|++|+|.|.. ...+...+.|+|+. ..|. ....+|..+..+|+|.|.+++.
T Consensus 1 ~tie~~p~~~~~G~~V~L~v~~-~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~ 79 (105)
T cd05774 1 LTIELVPPQVAEGENVLLLVHN-LPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQ 79 (105)
T ss_pred CeEeccCCcccCCCCEEEEecC-CCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCc
Confidence 3678888899999999999965 22333489999952 2221 1246788899999999999999
Q ss_pred CCCeEEEEEEEecCceeeeEeEEEE
Q psy574 71 TDDGRYQCVVKNVAGTRESTDAVLR 95 (977)
Q Consensus 71 ~D~G~Y~C~a~n~~g~~~s~~~~l~ 95 (977)
+|+|.|+|.+.+.....+...+.|.
T Consensus 80 ~D~G~Y~~~v~~~~~~~~~~~v~l~ 104 (105)
T cd05774 80 KDTGFYTLQTITTNFQVEQATVHLQ 104 (105)
T ss_pred ccCEEEEEEEEeCCccEEEEEEEEE
Confidence 9999999999987755444444444
No 194
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=98.84 E-value=1.2e-08 Score=87.18 Aligned_cols=74 Identities=23% Similarity=0.324 Sum_probs=59.0
Q ss_pred ceEEeCCCeEEEEEEec-ccCceEEEEEECCeeCCCCceEEeccceEEEccCccCCCeEEEEEEEeCCee-EEEEEEEEE
Q psy574 108 DTTVSASSIIVFECSVG-GDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGK-ISASATLTV 185 (977)
Q Consensus 108 ~~~v~~G~~v~l~C~v~-g~p~~~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~-~~~~~~L~V 185 (977)
...+.+|+.++|.|.+. +.+...+.|+|++..+... .....|.|.+++.+|+|.|+|.+.+..+. .+..+.|+|
T Consensus 8 ~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~----~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~s~~~~i~~ 83 (83)
T cd05753 8 SRVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYS----HSNSNLSIPQATLSDSGSYHCSGIIGSYDYSSEPVSITV 83 (83)
T ss_pred cceecCCCCEEEEeeCCCCCcceEEEEEECCeEcccc----CCCceEEECccCHHHCEEEEEEEEeCCceecCCCEEEEC
Confidence 44789999999999984 4667789999999876531 14568999999999999999999998875 444555554
No 195
>PHA03376 BARF1; Provisional
Probab=98.82 E-value=5.5e-08 Score=91.20 Aligned_cols=127 Identities=17% Similarity=0.225 Sum_probs=80.8
Q ss_pred ceEEeCCCcEEEEEECC--CCCCCCeEEEEeCC----EE-e----------ecCCCceEEEec-Cc--EEEEcCCCCCCC
Q psy574 14 SQRVAAGDTALLECGPP--RGHPEPTLVWKKNG----HP-I----------DFENSKRLRLVD-GT--NLAIQDSRKTDD 73 (977)
Q Consensus 14 ~~~v~~G~~v~L~C~~~--~g~P~~~v~W~k~g----~~-l----------~~~~~~r~~~~~-~g--~L~I~~v~~~D~ 73 (977)
.+.+..||.++|.|... ..-+...|+|+|.+ +. + .-+.++|+.+.. .| +|.|.+++.+|.
T Consensus 20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDd 99 (221)
T PHA03376 20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD 99 (221)
T ss_pred chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCC
Confidence 57899999999999762 22356789999942 11 1 123456666632 23 599999999999
Q ss_pred eEEEEEEEecCceeeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCC
Q psy574 74 GRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMP 141 (977)
Q Consensus 74 G~Y~C~a~n~~g~~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~ 141 (977)
|.|+|.+........ ..-.|++-.|-.+....+......-+...+.|.+.|+|.|.++|.-+.+.-+
T Consensus 100 GtY~C~fQkge~~~~-k~ehLt~V~~~~Lsv~a~~~dFp~~~~~~i~C~sggfP~P~~~Wle~~~~~~ 166 (221)
T PHA03376 100 GNYLCRMKLGETEVT-KQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEP 166 (221)
T ss_pred ceEEEEEEcCCCcee-eeeeeeeeecceEEEEeccccCCCCCeeEEEEecCCcCCchheeccccCCCC
Confidence 999999986542221 1113333322222222211111225667899999999999999998865443
No 196
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.82 E-value=1.4e-08 Score=87.93 Aligned_cols=73 Identities=21% Similarity=0.321 Sum_probs=56.4
Q ss_pred ceEEeCCCcEEEEEECC----CCCCCCeEEEEeCCEEeecCCCceEEE-ecCcEEEEcCCCCCCCeEEEEEEEecCcee
Q psy574 14 SQRVAAGDTALLECGPP----RGHPEPTLVWKKNGHPIDFENSKRLRL-VDGTNLAIQDSRKTDDGRYQCVVKNVAGTR 87 (977)
Q Consensus 14 ~~~v~~G~~v~L~C~~~----~g~P~~~v~W~k~g~~l~~~~~~r~~~-~~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~ 87 (977)
.+.+.+|.+..|.|.-. ...+.+.|+||||+++|.. ...++.. ..++.|.|.++..+|+|.|+|++.+..|..
T Consensus 4 ~~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~-~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~~~~~~~g~ 81 (95)
T cd05897 4 PQILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDK-DNEKFYSLKGSTYLHIIDVSLNDSGYYTCKLQFTHEGK 81 (95)
T ss_pred eeEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcC-CCcceEecCCCCEEEEEEcChhhCEEEEEEEEEeeCCE
Confidence 35688999999999531 2346779999999999843 3345544 335689999999999999999999986543
No 197
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=98.81 E-value=3.2e-08 Score=86.81 Aligned_cols=89 Identities=19% Similarity=0.219 Sum_probs=66.4
Q ss_pred CCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecC---CCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEE
Q psy574 195 PSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYP---GDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGV 271 (977)
Q Consensus 195 p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~---~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~ 271 (977)
+.++.+.+|++++|.|.+.+.|.+.+.|++.+..++... ....+|+.+.....+..+|.|.+++.+|+|.|+ |.+.
T Consensus 4 ~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~-C~~~ 82 (95)
T cd07701 4 TQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYT-CSLF 82 (95)
T ss_pred cceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEE-EEeE
Confidence 466789999999999999999999999997554332211 113567776443334569999999999999999 9999
Q ss_pred cCCCceeEEEEEEE
Q psy574 272 NAAGSDLARASLTV 285 (977)
Q Consensus 272 n~~g~~~~~~~l~V 285 (977)
+. ......+.|.|
T Consensus 83 t~-~~~~~~~~l~v 95 (95)
T cd07701 83 TM-PVKTSKAYLTV 95 (95)
T ss_pred ee-cCccEEEEEEC
Confidence 84 44466666654
No 198
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=98.81 E-value=3.6e-08 Score=85.08 Aligned_cols=77 Identities=26% Similarity=0.500 Sum_probs=63.1
Q ss_pred eEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCc-eEEe----ccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEE
Q psy574 109 TTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDR-MSVL----PSRSLQLSDVRLEDAGEYVCEAENAVGKISASATL 183 (977)
Q Consensus 109 ~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~-~~~~----~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L 183 (977)
+.+..|+.+.|.|.+.+.|.+.+.|+|++..+.... .... ....|.|.++..+|+|.|.|.+.|..|..+.++.|
T Consensus 4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l 83 (85)
T cd05729 4 HAVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYKV 83 (85)
T ss_pred eEecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEEE
Confidence 356789999999999999999999999998875321 2211 23479999999999999999999999998888887
Q ss_pred EE
Q psy574 184 TV 185 (977)
Q Consensus 184 ~V 185 (977)
.|
T Consensus 84 ~v 85 (85)
T cd05729 84 DV 85 (85)
T ss_pred eC
Confidence 64
No 199
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=98.80 E-value=4.6e-08 Score=85.36 Aligned_cols=78 Identities=18% Similarity=0.350 Sum_probs=63.0
Q ss_pred ecccceEEeCCCcEEEEEECCCCCCC-CeEEEEeCCEEeecCCCceEEEecC-------cEEEEcCCCCCC-CeEEEEEE
Q psy574 10 VQPKSQRVAAGDTALLECGPPRGHPE-PTLVWKKNGHPIDFENSKRLRLVDG-------TNLAIQDSRKTD-DGRYQCVV 80 (977)
Q Consensus 10 ~~p~~~~v~~G~~v~L~C~~~~g~P~-~~v~W~k~g~~l~~~~~~r~~~~~~-------g~L~I~~v~~~D-~G~Y~C~a 80 (977)
...+.+.+.+|+++.|.|.+ .+.|. ..|.|.+++..|.....+|+.+.+. ..|.|.++..+| .|.|.|.|
T Consensus 6 ~~~~s~~~~~G~~~~L~C~~-~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a 84 (98)
T cd05898 6 SSEQVQYAVRGERGKVKCFI-GSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTA 84 (98)
T ss_pred ecCceEEEeCCCcEEEEEEE-ccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEE
Confidence 45567899999999999999 55555 4789999988886655678877642 369999998877 79999999
Q ss_pred EecCceee
Q psy574 81 KNVAGTRE 88 (977)
Q Consensus 81 ~n~~g~~~ 88 (977)
.|+.|...
T Consensus 85 ~N~~G~d~ 92 (98)
T cd05898 85 WNSFGSGT 92 (98)
T ss_pred EeCCccce
Confidence 99999753
No 200
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.79 E-value=2.4e-08 Score=86.60 Aligned_cols=71 Identities=21% Similarity=0.272 Sum_probs=53.2
Q ss_pred eEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecC------------CCceEEEec----Cc--EEEEcCCCCCCCeEE
Q psy574 15 QRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFE------------NSKRLRLVD----GT--NLAIQDSRKTDDGRY 76 (977)
Q Consensus 15 ~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~------------~~~r~~~~~----~g--~L~I~~v~~~D~G~Y 76 (977)
+.+.+|++|+|.|.+ .+.+.+.+.|+++++..... ...|+.... +| +|+|.+++.+|+|+|
T Consensus 2 v~~~~G~~VtL~C~~-s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY 80 (94)
T cd07690 2 VLGKKGDTAELPCTA-SQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTY 80 (94)
T ss_pred eEeeCCCCEEEEEEe-CCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEE
Confidence 578999999999999 77889999999877443111 122322222 22 599999999999999
Q ss_pred EEEEEecCce
Q psy574 77 QCVVKNVAGT 86 (977)
Q Consensus 77 ~C~a~n~~g~ 86 (977)
.|.+.|..++
T Consensus 81 ~C~v~~~~~~ 90 (94)
T cd07690 81 ICEVEDKKEE 90 (94)
T ss_pred EEEECCccce
Confidence 9999987554
No 201
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=98.77 E-value=3.3e-08 Score=79.39 Aligned_cols=63 Identities=33% Similarity=0.734 Sum_probs=52.0
Q ss_pred CCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecCc
Q psy574 19 AGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAG 85 (977)
Q Consensus 19 ~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g 85 (977)
+|++++|.|.+ .+.|.+.+.|+|++..+. ........++.|.|.+++.+|+|.|+|.+.|..|
T Consensus 1 ~g~~~~l~C~~-~~~~~~~v~W~~~~~~~~---~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 1 EGQSVTLTCPA-EGDPVPNITWLKDGKPLP---ESNRLSASGSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CCceEEEEeeC-ccCCCCeEEEEECCEECC---CCCEEecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence 58999999997 788889999999999885 2223334467899999999999999999988654
No 202
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=98.77 E-value=7e-08 Score=83.25 Aligned_cols=79 Identities=29% Similarity=0.593 Sum_probs=59.4
Q ss_pred eEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCce-EEEe-cCcEEEEcCCCCCCCeEEEEEEEecCceeeeEeE
Q psy574 15 QRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKR-LRLV-DGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDA 92 (977)
Q Consensus 15 ~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r-~~~~-~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~~ 92 (977)
..+..|+.++|.|.+ .+.|.+.+.|+|++..+....... .... ....|.|.+++.+|.|.|.|.+.|..|... .++
T Consensus 4 ~~~~~G~~~~l~C~~-~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~-~~~ 81 (85)
T cd05729 4 HAVPAGSTVRLKCPA-SGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSIN-HTY 81 (85)
T ss_pred eEecCCCcEEEEEEc-CCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEE-EEE
Confidence 567789999999999 788999999999998874322111 1111 124699999999999999999999888743 445
Q ss_pred EEE
Q psy574 93 VLR 95 (977)
Q Consensus 93 ~l~ 95 (977)
.|.
T Consensus 82 ~l~ 84 (85)
T cd05729 82 KVD 84 (85)
T ss_pred EEe
Confidence 554
No 203
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=98.73 E-value=3.2e-08 Score=85.54 Aligned_cols=69 Identities=20% Similarity=0.298 Sum_probs=56.9
Q ss_pred CceEEeCCCeEEEEEEe-cccCceEEEEEECCeeC--C-CCceEEe-ccceEEEccCccCCCeEEEEEEEeCCe
Q psy574 107 KDTTVSASSIIVFECSV-GGDAVLTVHWKRLGSAM--P-EDRMSVL-PSRSLQLSDVRLEDAGEYVCEAENAVG 175 (977)
Q Consensus 107 ~~~~v~~G~~v~l~C~v-~g~p~~~i~W~k~~~~l--~-~~~~~~~-~~~~L~I~~v~~~D~G~Y~C~a~n~~g 175 (977)
....+.+|+.+.|.|.. .|.|.+.|.|++++..+ . ..+..+. .++.|.|.+|+.+|+|.|+|.|.|...
T Consensus 11 ~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n~~~ 84 (96)
T cd05727 11 DEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQTNGNLYIAKVEASDRGNYSCFVSSPSS 84 (96)
T ss_pred CceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeCCCCcEEEeecCHhhCceeEEEEEeccc
Confidence 44578999999999987 78899999999998754 2 2333344 479999999999999999999999764
No 204
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=98.73 E-value=4.4e-08 Score=82.39 Aligned_cols=66 Identities=27% Similarity=0.521 Sum_probs=52.0
Q ss_pred EEEEEEec-ccCceEEEEEECCeeCCCC-----ceEEe---ccceEEEccCccCCCeEEEEEEEeCCeeEEEEEE
Q psy574 117 IVFECSVG-GDAVLTVHWKRLGSAMPED-----RMSVL---PSRSLQLSDVRLEDAGEYVCEAENAVGKISASAT 182 (977)
Q Consensus 117 v~l~C~v~-g~p~~~i~W~k~~~~l~~~-----~~~~~---~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~ 182 (977)
+.|.|.+. +.|.+.+.|+|++..+... ++.+. ....|.|.++..+|+|.|+|.|.|..|..+.++.
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~ 75 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN 75 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence 46999985 4688899999999887532 12222 2367999999999999999999999998776654
No 205
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=98.72 E-value=1.2e-07 Score=82.71 Aligned_cols=91 Identities=24% Similarity=0.316 Sum_probs=70.8
Q ss_pred CCeEEecCCCcEEeeCCeEEEEEEEecCCCC-eEEEEEcCeeeeecCCCccccEEEEEcc---CCceEEEEeecccCC-C
Q psy574 188 APIVRERPSDLRLEVGRDAVFLCGIEGSPPP-STFWMLEGNRSLIYPGDRVDNIQAEITS---DGMNLLKIQNVSRTA-A 262 (977)
Q Consensus 188 ~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~-~i~W~~~g~~~~~~~~~~~~~~~~~~~~---~g~s~L~I~~v~~~d-~ 262 (977)
||.+ .....+.+.+|+.++|.|.+.+.|+| .|.|..++..+. .....+|.+.... ...++|.|.++...| .
T Consensus 2 pP~i-~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~---~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~ 77 (98)
T cd05898 2 PPII-SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLE---SGTSERYTVERTSTGSGVLSTLTINNIMEADFQ 77 (98)
T ss_pred CCEE-ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEcccccc---CCCCCCEEEEEEccCCCcEEEEEECCCccccCC
Confidence 4555 55667789999999999999888887 678988876442 1234678776542 234899999998877 7
Q ss_pred CeEEEEEEEcCCCceeEEEEE
Q psy574 263 PLIILCLGVNAAGSDLARASL 283 (977)
Q Consensus 263 G~Y~~C~a~n~~g~~~~~~~l 283 (977)
|.|. |.|.|..|.....+.|
T Consensus 78 g~Y~-C~a~N~~G~d~~~i~L 97 (98)
T cd05898 78 THYN-CTAWNSFGSGTAIIQL 97 (98)
T ss_pred cEEE-EEEEeCCccceEEEEe
Confidence 9999 9999999999877665
No 206
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=98.70 E-value=1.1e-07 Score=82.48 Aligned_cols=76 Identities=25% Similarity=0.357 Sum_probs=58.5
Q ss_pred eEEeCCCeEEEEEEecccCceEEEEEECCe--e----CC-CCceEEeccceEEEccCccCCCeEEEEEEE-eCCeeEEEE
Q psy574 109 TTVSASSIIVFECSVGGDAVLTVHWKRLGS--A----MP-EDRMSVLPSRSLQLSDVRLEDAGEYVCEAE-NAVGKISAS 180 (977)
Q Consensus 109 ~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~--~----l~-~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~-n~~g~~~~~ 180 (977)
+.+.+|+++.|.|.. +.|.+.+.|+|.+. . +. ..++.. .++.|.|.+++.+|+|.|+|.|. |..+.....
T Consensus 6 ~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~-~~~~L~I~~~~~~DsG~Y~C~a~~~~~~~~~~~ 83 (91)
T cd05871 6 VYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIH-TERGLLLRSLQRSDAGVYTCTAVEHSFSQTLAK 83 (91)
T ss_pred EEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEE-ecCeEEEeeCChhHCEEEEEEEEccCCeEEEEE
Confidence 457899999999997 47889999998532 1 11 233333 55779999999999999999998 566666678
Q ss_pred EEEEEe
Q psy574 181 ATLTVQ 186 (977)
Q Consensus 181 ~~L~V~ 186 (977)
++|+|.
T Consensus 84 ~~l~v~ 89 (91)
T cd05871 84 YTLHVI 89 (91)
T ss_pred EEEEEe
Confidence 888875
No 207
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=98.70 E-value=7.4e-08 Score=77.33 Aligned_cols=63 Identities=33% Similarity=0.682 Sum_probs=53.0
Q ss_pred CCCeEEEEEEecccCceEEEEEECCeeCCCCceEEeccceEEEccCccCCCeEEEEEEEeCCe
Q psy574 113 ASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVG 175 (977)
Q Consensus 113 ~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g 175 (977)
+|++++|.|.+.+.+.+.+.|++++..+............|.|.+++.+|+|.|+|.+.|..|
T Consensus 1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPNITWLKDGKPLPESNRLSASGSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CCceEEEEeeCccCCCCeEEEEECCEECCCCCEEecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence 588999999998889999999999988873333334567899999999999999999988754
No 208
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=98.70 E-value=1.1e-07 Score=83.83 Aligned_cols=79 Identities=25% Similarity=0.482 Sum_probs=60.1
Q ss_pred CCceEEeCCCeEEEEEEecccCceEEEEEECCee---------CCCCceEEe----ccceEEEccCccCCCeEEEEEEEe
Q psy574 106 PKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSA---------MPEDRMSVL----PSRSLQLSDVRLEDAGEYVCEAEN 172 (977)
Q Consensus 106 p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~---------l~~~~~~~~----~~~~L~I~~v~~~D~G~Y~C~a~n 172 (977)
+++..+.+|++++|.|.+.+.+.+.+.|++.+.. +...|+.+. ....|.|.+++.+|+|.|+|.+.+
T Consensus 4 ~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~ 83 (95)
T cd05717 4 TQDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYT 83 (95)
T ss_pred CCcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEec
Confidence 4567899999999999998888899999863221 233455553 235799999999999999999987
Q ss_pred CCeeEEEEEEEEE
Q psy574 173 AVGKISASATLTV 185 (977)
Q Consensus 173 ~~g~~~~~~~L~V 185 (977)
... .++.+.|+|
T Consensus 84 ~~~-~~~~~~~~v 95 (95)
T cd05717 84 MPV-QTAKATVTV 95 (95)
T ss_pred CCC-ceEEEEEEC
Confidence 653 466666665
No 209
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=98.69 E-value=1.1e-07 Score=80.34 Aligned_cols=66 Identities=27% Similarity=0.470 Sum_probs=55.1
Q ss_pred cceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEec
Q psy574 13 KSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNV 83 (977)
Q Consensus 13 ~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~ 83 (977)
+.+.+.+|++++|+|.. .+ +.+.+.|++||..+.. +.|+....+| |.|.+++++|+|.|+|.+...
T Consensus 4 ~~~tv~~g~~v~L~C~~-~s-~~A~v~W~~ng~~l~~--~~r~~~~~~G-LlI~~~~~~dsG~Y~C~s~E~ 69 (85)
T cd05872 4 KNRTVAPGADVVLPCQL-RS-NLASPVWLFNGTPLNA--QFSYRVGTDG-LLILVTSPEHSGTYRCYSEEE 69 (85)
T ss_pred eEEEEecCCCEEEECCC-CC-CCccEEEEECCcccCC--CcceEEeCCC-CEEEECCHhhCEEEEEEEecC
Confidence 46889999999999988 44 4679999999999843 3677777666 789999999999999998743
No 210
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=98.69 E-value=4.6e-08 Score=84.05 Aligned_cols=81 Identities=11% Similarity=0.132 Sum_probs=59.0
Q ss_pred CCeEEEEEEEecC--CCCeEEEEEcCeeeeecCCCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEE
Q psy574 203 GRDAVFLCGIEGS--PPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLAR 280 (977)
Q Consensus 203 G~~v~L~C~~~g~--p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~ 280 (977)
|+.++|.|.+.+. |.+.+.|.+++..+....... .+..........+.|.|.+++.+|+|.|+ |.|.|..|....+
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~-~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~-C~a~n~~~~~~~s 78 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMV-TRQSLSEATELSSTLTIPNATLKDSGTYT-CAASSGTMDQKES 78 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEee-cccccccceEEEEEEEECCCChhhCEEEE-EEEccCCCceEEE
Confidence 7899999999999 888999998876542111000 01111111112359999999999999999 9999999999888
Q ss_pred EEEEE
Q psy574 281 ASLTV 285 (977)
Q Consensus 281 ~~l~V 285 (977)
+.|.|
T Consensus 79 ~~v~v 83 (84)
T cd05742 79 TKVNI 83 (84)
T ss_pred EEEEE
Confidence 88776
No 211
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=98.67 E-value=1.3e-07 Score=80.40 Aligned_cols=78 Identities=32% Similarity=0.624 Sum_probs=60.9
Q ss_pred CeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceEEeccceEEEccCccCCCeEEEEEEEeCCe-eEE
Q psy574 100 PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVG-KIS 178 (977)
Q Consensus 100 P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g-~~~ 178 (977)
|.+...+ ..+.+|+++.|.|.+.+.|...+.|++++..+... ...|.|.++..+|+|.|+|.+.+..+ ..+
T Consensus 2 P~l~~~~--~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~------~~~~~~~~~~~~~~g~y~C~~~~~~~~~~s 73 (80)
T PF13895_consen 2 PVLSSSP--QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSS------QNGLFIPNVSPEDSGNYTCRASNGSGSNTS 73 (80)
T ss_dssp -EEEEES--SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEE------SSEEEESSEEGGGTEEEEEEEEETTEEEEE
T ss_pred cEEEccc--eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeee------eeeeeeeeeccccCEEEEEEEEeCCCCeEe
Confidence 4444334 56899999999999999888999999998777632 12277899999999999999999665 466
Q ss_pred EEEEEEE
Q psy574 179 ASATLTV 185 (977)
Q Consensus 179 ~~~~L~V 185 (977)
..++|+|
T Consensus 74 ~~~~v~V 80 (80)
T PF13895_consen 74 TSVNVTV 80 (80)
T ss_dssp EEEEEEE
T ss_pred eeEEeeC
Confidence 7777765
No 212
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=98.67 E-value=2.3e-07 Score=79.70 Aligned_cols=81 Identities=32% Similarity=0.638 Sum_probs=64.1
Q ss_pred ccceEEeCCCcEEEEEECCCCCCCCeEEEEeC-CEEeecCCCceEEEecC---cEEEEcCCCCCCCeEEEEEEEecCcee
Q psy574 12 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKN-GHPIDFENSKRLRLVDG---TNLAIQDSRKTDDGRYQCVVKNVAGTR 87 (977)
Q Consensus 12 p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~-g~~l~~~~~~r~~~~~~---g~L~I~~v~~~D~G~Y~C~a~n~~g~~ 87 (977)
|..+.+.+|++++|.|.+ .+.+.+.+.|+++ ++.+. ...++.+... ..|.|.+++.+|+|.|.|.+.+..+..
T Consensus 1 ~~~~~~~~g~~~~l~C~~-~~~~~~~~~W~~~~~~~v~--~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~ 77 (86)
T smart00410 1 PPSVTVKEGESVTLSCEV-SGSPPPEVTWYKQGGKLLA--ESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSA 77 (86)
T ss_pred CCcEEEeCCCeEEEEEEE-ccCCCCeEEEEECCCEEcC--CCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeE
Confidence 456789999999999999 5568889999998 88774 3345555544 579999999999999999999877765
Q ss_pred eeEeEEEEE
Q psy574 88 ESTDAVLRV 96 (977)
Q Consensus 88 ~s~~~~l~V 96 (977)
... +.|.|
T Consensus 78 ~~~-~~l~V 85 (86)
T smart00410 78 SST-TTLTV 85 (86)
T ss_pred EEE-EEEEE
Confidence 444 66655
No 213
>smart00409 IG Immunoglobulin.
Probab=98.67 E-value=2.3e-07 Score=79.70 Aligned_cols=81 Identities=32% Similarity=0.638 Sum_probs=64.1
Q ss_pred ccceEEeCCCcEEEEEECCCCCCCCeEEEEeC-CEEeecCCCceEEEecC---cEEEEcCCCCCCCeEEEEEEEecCcee
Q psy574 12 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKN-GHPIDFENSKRLRLVDG---TNLAIQDSRKTDDGRYQCVVKNVAGTR 87 (977)
Q Consensus 12 p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~-g~~l~~~~~~r~~~~~~---g~L~I~~v~~~D~G~Y~C~a~n~~g~~ 87 (977)
|..+.+.+|++++|.|.+ .+.+.+.+.|+++ ++.+. ...++.+... ..|.|.+++.+|+|.|.|.+.+..+..
T Consensus 1 ~~~~~~~~g~~~~l~C~~-~~~~~~~~~W~~~~~~~v~--~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~ 77 (86)
T smart00409 1 PPSVTVKEGESVTLSCEV-SGSPPPEVTWYKQGGKLLA--ESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSA 77 (86)
T ss_pred CCcEEEeCCCeEEEEEEE-ccCCCCeEEEEECCCEEcC--CCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeE
Confidence 456789999999999999 5568889999998 88774 3345555544 579999999999999999999877765
Q ss_pred eeEeEEEEE
Q psy574 88 ESTDAVLRV 96 (977)
Q Consensus 88 ~s~~~~l~V 96 (977)
... +.|.|
T Consensus 78 ~~~-~~l~V 85 (86)
T smart00409 78 SST-TTLTV 85 (86)
T ss_pred EEE-EEEEE
Confidence 444 66655
No 214
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=98.61 E-value=2.2e-07 Score=77.28 Aligned_cols=63 Identities=22% Similarity=0.351 Sum_probs=50.8
Q ss_pred EEEEEECCCCCCCCeEEEEeCCEEeecCC-----CceEEEecCcEEEEcCCCCCCCeEEEEEEEecCcee
Q psy574 23 ALLECGPPRGHPEPTLVWKKNGHPIDFEN-----SKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTR 87 (977)
Q Consensus 23 v~L~C~~~~g~P~~~v~W~k~g~~l~~~~-----~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~ 87 (977)
+.|.|....+.|.+.|.|||||++|.... .++++ ..+.|.|...+.+|.+.|+|+|.|..+..
T Consensus 2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~~~~~~~t--~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~ 69 (80)
T cd05885 2 VELTCLSPRSKPAATLRWYRDRKELKGVISQQENGKTVS--VSNTIRFPVDRKDDGAILSCEASHPALVS 69 (80)
T ss_pred EEEEEeCCCccCCCeEEEEECCEECCCCcccccCCceEE--EEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence 78999999999999999999999995321 11122 24579999999999999999999988653
No 215
>KOG4802|consensus
Probab=98.61 E-value=1.1e-06 Score=91.69 Aligned_cols=151 Identities=18% Similarity=0.118 Sum_probs=97.1
Q ss_pred cEEEeceecCcCeEEEEccCCCCeEEEEEEEEcCCCCCCCCCCCceEEeeccccccccccCCcceeecCCCCCCCcchHH
Q psy574 454 TWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLR 533 (977)
Q Consensus 454 ~w~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~G~s~~S~~s~~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~g~~~~ 533 (977)
.|+++........+...+++|+..|.|+|.|+|..|.-..|.++..+.....+. +|+
T Consensus 198 hwQtv~~t~~e~~~~~t~~rPgRwyefrvaavn~~G~rGFs~PSkpf~ssk~pk--------------aPp--------- 254 (516)
T KOG4802|consen 198 HWQTVEKTMEENTYIFTDMRPGRWYEFRVAAVNAYGFRGFSEPSKPFPSSKNPK--------------APP--------- 254 (516)
T ss_pred cceeeeecCCCceeeeeecCcceeEEEEEeeeecccccccCCCCCCCCCCCCCC--------------CCc---------
Confidence 688887766777889999999999999999999988766666666655522211 110
Q ss_pred HHhhcccccCCceEEEEEeeEeCCCeEEEEEEec-CCCccceEEEEEEecCCCCCceEEE-EeecCccceEEECCCCCCc
Q psy574 534 RARQHLQEGGGSLIELTEVKPMTSTSVKLTWEIL-NTDYIEGVYIYSRGLDPPASVAMLT-VLHAGEASGFLVTGLAHYS 611 (977)
Q Consensus 534 ~~~~~l~~~~~~~~~~l~~~~~~~tsv~lsW~~p-~~~~i~~Y~v~y~~~~~~~~~~~~~-~~~~~~~~~~~i~~L~p~t 611 (977)
++.-.++..+...+.-...|.|.|+ .+-++..|+|.|...-...+-.+.+ ....-.+..+.|.+|.|+.
T Consensus 255 ---------~P~dl~l~~v~~dG~~~~~v~w~P~~sdlPv~~Yki~Ws~~v~s~k~~m~tks~~~k~thq~si~~L~Pns 325 (516)
T KOG4802|consen 255 ---------SPNDLKLIGVQFDGRYMLKVVWCPSKSDLPVEKYKITWSLYVNSAKASMITKSSYVKDTHQFSIKELLPNS 325 (516)
T ss_pred ---------CcccceeeeeeecceEEEEEEeCCCCCCCcceeeEEEeehhhhhhhhhcccccceeeccchhhhhhcCCCC
Confidence 0111122233333444578889888 7778999999997554211111111 0001123345599999999
Q ss_pred EEEEEEEEeecceeCCCC-C-ceEEec
Q psy574 612 RYEFFLVPFFGSVDGKPS-N-LRAVRT 636 (977)
Q Consensus 612 ~Y~~~V~a~n~~g~g~~s-~-~~~~~T 636 (977)
.|.+.|+|....|.+..- + ++.|.+
T Consensus 326 ~Y~VevqAi~y~g~~rLksek~~~F~~ 352 (516)
T KOG4802|consen 326 SYYVEVQAISYLGSRRLKSEKWMLFNT 352 (516)
T ss_pred eEEEEEEEEEeccCcccccceEEEEee
Confidence 999999999988876532 2 444444
No 216
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.59 E-value=2.2e-07 Score=81.54 Aligned_cols=75 Identities=23% Similarity=0.293 Sum_probs=57.5
Q ss_pred CCcEEEEEECCCCCCCCeEEEEeCCEEee----------------cCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEec
Q psy574 20 GDTALLECGPPRGHPEPTLVWKKNGHPID----------------FENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNV 83 (977)
Q Consensus 20 G~~v~L~C~~~~g~P~~~v~W~k~g~~l~----------------~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~ 83 (977)
|++|+|.|.. ...+...|.|+|+..... ....+|+.+..+++|.|.+++.+|+|.|+|.+...
T Consensus 1 G~~VtL~c~~-~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~l~~~DsG~Y~c~v~~~ 79 (92)
T cd05741 1 GESVTLPVSN-LPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLLIQNLTKEDSGTYTLQIIST 79 (92)
T ss_pred CCcEEEEccc-CCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEEEccCCchhcEEEEEEEEcC
Confidence 8999999988 445667899999653210 12356788888899999999999999999999987
Q ss_pred CceeeeEeEEEE
Q psy574 84 AGTRESTDAVLR 95 (977)
Q Consensus 84 ~g~~~s~~~~l~ 95 (977)
.+......+.|.
T Consensus 80 ~~~~~~~~~~l~ 91 (92)
T cd05741 80 NGVTENAKFFLR 91 (92)
T ss_pred CCcEEEEEEEEE
Confidence 766555555554
No 217
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=98.58 E-value=1.2e-07 Score=81.82 Aligned_cols=70 Identities=19% Similarity=0.351 Sum_probs=59.4
Q ss_pred CCceEEeCCCeEEEEEE-ecccCceEEEEEECCeeC-C-CCceEEeccceEEEccCccCCCe-EEEEEEEeCCe
Q psy574 106 PKDTTVSASSIIVFECS-VGGDAVLTVHWKRLGSAM-P-EDRMSVLPSRSLQLSDVRLEDAG-EYVCEAENAVG 175 (977)
Q Consensus 106 p~~~~v~~G~~v~l~C~-v~g~p~~~i~W~k~~~~l-~-~~~~~~~~~~~L~I~~v~~~D~G-~Y~C~a~n~~g 175 (977)
.+.+.+.+|+.+.|.|. ..|.|.|.|.|++++..+ . ..|+.+..++.|.|.+++.+|+| .|.|.|.|...
T Consensus 10 ~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~~~~~ 83 (95)
T cd05845 10 IRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMGQNGNLYFANVEEQDSHPDYICHAHFPGL 83 (95)
T ss_pred cceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEECCCceEEEEEEehhhCCCCeEEEEEcccc
Confidence 46778999999999998 599999999999876543 2 45666667899999999999999 89999998753
No 218
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=98.58 E-value=4.5e-07 Score=79.98 Aligned_cols=89 Identities=22% Similarity=0.266 Sum_probs=63.8
Q ss_pred CCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCC---CccccEEEEEccCCceEEEEeecccCCCCeEEEEEEE
Q psy574 195 PSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPG---DRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGV 271 (977)
Q Consensus 195 p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~---~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~ 271 (977)
+.+..+.+|++++|.|.+.+.+.+.+.|++.+..+..... ....|+.+.....+...|.|.+++.+|+|.|+ |.+.
T Consensus 4 ~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~-C~~~ 82 (95)
T cd05717 4 TQDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYT-CSLY 82 (95)
T ss_pred CCcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEE-EEEe
Confidence 3566889999999999998888889999875443322111 12357766443334468999999999999999 9998
Q ss_pred cCCCceeEEEEEEE
Q psy574 272 NAAGSDLARASLTV 285 (977)
Q Consensus 272 n~~g~~~~~~~l~V 285 (977)
+.. ...+.+.|.|
T Consensus 83 ~~~-~~~~~~~~~v 95 (95)
T cd05717 83 TMP-VQTAKATVTV 95 (95)
T ss_pred cCC-CceEEEEEEC
Confidence 765 3456666554
No 219
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=98.57 E-value=2.9e-07 Score=79.12 Aligned_cols=73 Identities=22% Similarity=0.402 Sum_probs=56.7
Q ss_pred CCeEEEEEEecccC--ceEEEEEECCeeCCC----Cc--eEE----eccceEEEccCccCCCeEEEEEEEeCCeeEEEEE
Q psy574 114 SSIIVFECSVGGDA--VLTVHWKRLGSAMPE----DR--MSV----LPSRSLQLSDVRLEDAGEYVCEAENAVGKISASA 181 (977)
Q Consensus 114 G~~v~l~C~v~g~p--~~~i~W~k~~~~l~~----~~--~~~----~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~ 181 (977)
|+++.|.|.+.+++ ...+.|.+.+..+.. .. ... .....|.|.+++.+|+|.|+|.|.|..+.....+
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t 80 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNST 80 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccE
Confidence 78999999997655 567899988764321 11 111 1246899999999999999999999999888888
Q ss_pred EEEEe
Q psy574 182 TLTVQ 186 (977)
Q Consensus 182 ~L~V~ 186 (977)
+|.|+
T Consensus 81 ~~~V~ 85 (86)
T cd05862 81 IVIVH 85 (86)
T ss_pred EEEEe
Confidence 88886
No 220
>smart00409 IG Immunoglobulin.
Probab=98.56 E-value=8.1e-07 Score=76.20 Aligned_cols=79 Identities=35% Similarity=0.606 Sum_probs=64.7
Q ss_pred CceEEeCCCeEEEEEEecccCceEEEEEEC-CeeCC-CCceEEecc---ceEEEccCccCCCeEEEEEEEeCCeeEEEEE
Q psy574 107 KDTTVSASSIIVFECSVGGDAVLTVHWKRL-GSAMP-EDRMSVLPS---RSLQLSDVRLEDAGEYVCEAENAVGKISASA 181 (977)
Q Consensus 107 ~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~-~~~l~-~~~~~~~~~---~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~ 181 (977)
....+..|+++.|.|.+.+.+.+.+.|+++ +..+. ..++..... ..|.|.++..+|+|.|+|.+.+..+.....+
T Consensus 2 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~ 81 (86)
T smart00409 2 PSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTT 81 (86)
T ss_pred CcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEE
Confidence 456788999999999998888889999998 77775 445554433 6899999999999999999998887766667
Q ss_pred EEEE
Q psy574 182 TLTV 185 (977)
Q Consensus 182 ~L~V 185 (977)
.|.|
T Consensus 82 ~l~V 85 (86)
T smart00409 82 TLTV 85 (86)
T ss_pred EEEE
Confidence 7766
No 221
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=98.56 E-value=8.1e-07 Score=76.20 Aligned_cols=79 Identities=35% Similarity=0.606 Sum_probs=64.7
Q ss_pred CceEEeCCCeEEEEEEecccCceEEEEEEC-CeeCC-CCceEEecc---ceEEEccCccCCCeEEEEEEEeCCeeEEEEE
Q psy574 107 KDTTVSASSIIVFECSVGGDAVLTVHWKRL-GSAMP-EDRMSVLPS---RSLQLSDVRLEDAGEYVCEAENAVGKISASA 181 (977)
Q Consensus 107 ~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~-~~~l~-~~~~~~~~~---~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~ 181 (977)
....+..|+++.|.|.+.+.+.+.+.|+++ +..+. ..++..... ..|.|.++..+|+|.|+|.+.+..+.....+
T Consensus 2 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~ 81 (86)
T smart00410 2 PSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTT 81 (86)
T ss_pred CcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEE
Confidence 456788999999999998888889999998 77775 445554433 6899999999999999999998887766667
Q ss_pred EEEE
Q psy574 182 TLTV 185 (977)
Q Consensus 182 ~L~V 185 (977)
.|.|
T Consensus 82 ~l~V 85 (86)
T smart00410 82 TLTV 85 (86)
T ss_pred EEEE
Confidence 7766
No 222
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.56 E-value=1.5e-07 Score=82.04 Aligned_cols=87 Identities=16% Similarity=0.268 Sum_probs=63.0
Q ss_pred cccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecC
Q psy574 5 REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVA 84 (977)
Q Consensus 5 ~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~ 84 (977)
+|.+.+.|. ..|.+|++|+|.|.. ..+...+.|+|+|........ ......+.|.|.+++.+|+|.|+|.+.+..
T Consensus 2 kP~L~a~p~-~vV~~G~~VtL~C~~--~~~~~~f~l~k~g~~~~~~~~--~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~~ 76 (91)
T cd05751 2 KPSLWAEPS-SVVPLGKPVTLRCQG--PYGAVEYRLYREGSTFAVKKP--PEPQNKAKFFIPSMKREHAGRYRCYYRSGV 76 (91)
T ss_pred CCEEEecCC-CccCCCCcEEEEEec--CCCCCEEEEEECCCCcccccc--CCCceeEEEEccCCChhHCEEEEEEEECCC
Confidence 577888885 579999999999987 367788999999987532110 011224579999999999999999998763
Q ss_pred -c-eeeeEeEEEEE
Q psy574 85 -G-TRESTDAVLRV 96 (977)
Q Consensus 85 -g-~~~s~~~~l~V 96 (977)
+ ...|..+.|.|
T Consensus 77 ~~~S~~Sd~lel~V 90 (91)
T cd05751 77 ALWSEPSDPLELVV 90 (91)
T ss_pred CccCCCCCcEEEEe
Confidence 1 22345455554
No 223
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.56 E-value=2.9e-07 Score=81.29 Aligned_cols=80 Identities=18% Similarity=0.328 Sum_probs=59.1
Q ss_pred eCCCcEEEEEECCCCCCCCeEEEEeCCEEeec---------------CCCceEEEec-CcEEEEcCCCCCCCeEEEEEEE
Q psy574 18 AAGDTALLECGPPRGHPEPTLVWKKNGHPIDF---------------ENSKRLRLVD-GTNLAIQDSRKTDDGRYQCVVK 81 (977)
Q Consensus 18 ~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~---------------~~~~r~~~~~-~g~L~I~~v~~~D~G~Y~C~a~ 81 (977)
..|++|+|.|....+.....|.|+|+...+-. .-..|+.+.. +++|.|.+++.+|+|.|.|.+.
T Consensus 2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~ 81 (97)
T cd05775 2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEIN 81 (97)
T ss_pred ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEE
Confidence 47999999998733345568999986532211 1124666655 3789999999999999999999
Q ss_pred ecCceeeeEeEEEEEE
Q psy574 82 NVAGTRESTDAVLRVL 97 (977)
Q Consensus 82 n~~g~~~s~~~~l~V~ 97 (977)
+..|..-...+.|.|+
T Consensus 82 ~~~~~~~~~~f~L~vy 97 (97)
T cd05775 82 TKNGVTITKEFTLHIY 97 (97)
T ss_pred cCCCCeEEEEEEEEeC
Confidence 8877766777777763
No 224
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=98.56 E-value=0.013 Score=77.49 Aligned_cols=318 Identities=13% Similarity=0.115 Sum_probs=188.7
Q ss_pred ceEEeCCCcEEEEEECCCCCCCCeEEEEeCCE-EeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEE--EecCceeeeE
Q psy574 14 SQRVAAGDTALLECGPPRGHPEPTLVWKKNGH-PIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVV--KNVAGTREST 90 (977)
Q Consensus 14 ~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~-~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a--~n~~g~~~s~ 90 (977)
...+..|+.|+|.-.. .......+.|..++. .... ....+.. +-...|.|...+ .|..|... .
T Consensus 1706 ~~~aavn~~V~fs~~l-t~GS~vty~W~~gdG~s~~~-s~p~~tH-----------tf~~~G~y~VtVta~N~vss~~-~ 1771 (2740)
T TIGR00864 1706 DNPAAVNALINLSAEL-AEGSGLQYRWFLEEGDDLET-SEPFMSH-----------SFPSAGLHLVTMKAFNELGSAN-A 1771 (2740)
T ss_pred CCcccCCCeEEEEEEe-cCCCCcEEEEEECCCCCccc-CCCceEE-----------EccCCceEEEEEEEEccccccc-e
Confidence 3456789999998776 566677899986442 2211 1111111 134567787655 45666544 4
Q ss_pred eEEEEEEcCCe---EEeC-CCce-EEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceEEeccceEEEccCccCCCeE
Q psy574 91 DAVLRVLVKPY---IIRG-PKDT-TVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGE 165 (977)
Q Consensus 91 ~~~l~V~~~P~---~~~~-p~~~-~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~D~G~ 165 (977)
...+.|+.+.. +... +... .+..|..+.|.-.+.-.-...+.|..++..-..++ . ...+..+.|.
T Consensus 1772 s~~V~VqepV~GL~i~~~~~~~~~~~~ag~~v~F~a~vstGsnVsw~W~f~~g~s~~gk-------~---v~~Tf~~aG~ 1841 (2740)
T TIGR00864 1772 SEEVDVQEPISGLKIRAADAGEQNFFAADSSVCFQGELATGTNVSWCWAIDGGSSKMGK-------H---ACMTFPDAGT 1841 (2740)
T ss_pred eEEEEEEeccccceEecCCCCcccceecCcEEEEEEEccCCCeeEEEEEeCCCCccccc-------e---eEEecCCCeE
Confidence 56777776542 2111 1122 45678888888876433345788888754312111 0 1155678899
Q ss_pred EEEE--EEeCCeeEEEEEEEEEeeCC-eEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCee-eeecCCCccccEE
Q psy574 166 YVCE--AENAVGKISASATLTVQMAP-IVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNR-SLIYPGDRVDNIQ 241 (977)
Q Consensus 166 Y~C~--a~n~~g~~~~~~~L~V~~~p-~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~-~~~~~~~~~~~~~ 241 (977)
|+-. |.|..+....+..+.|+.+. .+.+......+..|+.++|.+.........+.|...+.. ....++ .++.
T Consensus 1842 ytV~L~AsN~vs~~~~s~~~~VQe~I~~L~L~as~~~~~~n~~v~fsa~l~~GS~Vtf~w~fGdgs~~~~t~~---~t~~ 1918 (2740)
T TIGR00864 1842 FAIRLNASNAVSGKSASREFFAEEPIFGLELKASKKIAAIGEKVEFQILLAAGSAVNFRLQIGGAAPEVLQPG---PRFS 1918 (2740)
T ss_pred EEEEEEEEcccCcceeeeeEEEEEecceEEEecccccccCCCEEEEEEEecCCCceEEEEEeCCCCceeecCC---CeEE
Confidence 9765 66888887788888898776 455666777889999999999987777778889886533 221111 1121
Q ss_pred EEEccCCceEEEEeecccCCCCeEEE-EEEEcCCCceeEEEEEEEECCCCCCCCeEEeCCC-ceeecCCCcEEEEEEEcc
Q psy574 242 AEITSDGMNLLKIQNVSRTAAPLIIL-CLGVNAAGSDLARASLTVSGPDPNPPPVILFGPA-NQTLPLRSEARLRCQVRG 319 (977)
Q Consensus 242 ~~~~~~g~s~L~I~~v~~~d~G~Y~~-C~a~n~~g~~~~~~~l~V~~~~~~~pp~i~~~p~-~~~v~~g~~~~L~C~~~~ 319 (977)
.. ....|.|.. -.|.|..+.......+.|..+. .-...... ...+..|+..++.-.+..
T Consensus 1919 Hs---------------Y~~~G~Y~VtV~A~N~Vs~~~a~~~V~Vle~V----~gL~I~~~c~~~~~~g~~~tF~A~v~~ 1979 (2740)
T TIGR00864 1919 HS---------------FPRVDDHMVNLRAKNEVSCAQANLHIEVLEAV----RGLQIPDCCAAGIATGEEKNFTANVQR 1979 (2740)
T ss_pred ee---------------cCCCCcEEEEEEEEeccceeeeeEEEEEEEec----cceEecCCcccceecCceEEEEEEEec
Confidence 11 122344431 5677887877777676665521 11111111 112678999999888877
Q ss_pred --CceEEEEECCEEcCCCCcEEEecCceEEEeccCCCCCeEEE--EEEEcCCCceEEEEEEEEECC
Q psy574 320 --EGSVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYT--CVVKSPHGSASWSASLRFESP 381 (977)
Q Consensus 320 --~p~i~W~~~g~~l~~~~~~~~~~~~sl~I~~v~~~d~G~Y~--C~a~n~~G~~~~s~~l~v~~~ 381 (977)
+..+.|++.-..+.....+..... +.+.. ....|.|. ..|.|..|.......+.|+.+
T Consensus 1980 g~~V~f~W~f~~~~~~g~~~~~~~G~-~vty~---~~~~G~~~I~v~A~N~l~s~n~t~~i~VQ~~ 2041 (2740)
T TIGR00864 1980 GKPVAFAWTFDLHHLHGDSLVIHMGK-DVSYT---AEAAGLLEIQLGAFNALGAENITLQLEAQDA 2041 (2740)
T ss_pred CCceEEEEEeeecccCCCcceeecCC-ceEEc---cCCCcEEEEEEEEEcccCcccccEEEEEEeh
Confidence 567899876444443333222111 11111 12466654 568898898877777777654
No 225
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=98.56 E-value=0.013 Score=77.42 Aligned_cols=363 Identities=16% Similarity=0.180 Sum_probs=176.7
Q ss_pred ecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEE-eecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEE--ecCce
Q psy574 10 VQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHP-IDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVK--NVAGT 86 (977)
Q Consensus 10 ~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~-l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~--n~~g~ 86 (977)
..+....+..|+.+.+.=....+ ....+.|-.++.. ...... ..+. . -.-...|.|....+ |..+.
T Consensus 1346 ~t~s~~~v~lG~tV~Ftatss~g-~~~sw~WDFGDG~ts~t~st-------~qNp--t-HTY~~pGtYTVTLTVtN~~gs 1414 (2740)
T TIGR00864 1346 LQAEKQFFALGDEAQFQACAEPE-FNYRYEWDFGGEEAAPLPAA-------GAEV--T-FIYNDPGCYLVTVAASNNISA 1414 (2740)
T ss_pred ecccccccccCCeEEEEEecCCC-CcEEEEEEeCCCCccccccC-------CCcc--e-EEcCCCceEEEEEEEECCCcc
Confidence 33333446678888887554222 2346777764332 100000 0000 0 11234677776654 33332
Q ss_pred eeeEeEEEEEEcCCe---EEeCCCce-EEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceEEeccceEEEccCccCC
Q psy574 87 RESTDAVLRVLVKPY---IIRGPKDT-TVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLED 162 (977)
Q Consensus 87 ~~s~~~~l~V~~~P~---~~~~p~~~-~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~D 162 (977)
.+....+.|..+.. |....... .+..+..+.+.=...|. ...+.|...++.....+ ........
T Consensus 1415 -~T~s~~I~V~~Pv~~~~ft~ngT~g~~ltlg~pv~Ftd~StGt-~~Sy~WdFGDGstst~q----------nptHtY~~ 1482 (2740)
T TIGR00864 1415 -ANDSALIEVLEPVGATSFKHNGSHGNNLELGQPYLFSAFGRAR-NASYLWDFGDGGLLEGP----------EILHAFNS 1482 (2740)
T ss_pred -eeeeeEEEEecCCCcceeeecCCcccccccCcceEEeecCCCC-ceEEEEECCCCCccCcc----------ceEEEcCC
Confidence 23445667764421 21111100 12233344443222333 45788888665432211 11123456
Q ss_pred CeEEEEE--EEeCCeeEEEEEEEEEeeCC-eEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCcccc
Q psy574 163 AGEYVCE--AENAVGKISASATLTVQMAP-IVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDN 239 (977)
Q Consensus 163 ~G~Y~C~--a~n~~g~~~~~~~L~V~~~p-~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~ 239 (977)
.|.|+-. +.|..|..+....+.|..+. .+...+....+..+..+.|.-.........+.|...+...... ... .
T Consensus 1483 ~GtYtVtLTvtN~~Gsst~T~~VtV~~pV~~~tinas~~~vpl~~sV~Fta~~s~Gs~v~ysWdFGDg~ts~~-~np--t 1559 (2740)
T TIGR00864 1483 PGDFNIRLAAANEVGKNEATLNVAVKARVRGLTINASLTNVPLNGSVHFEAHLDAGDDVRFSWILCDHCTPIF-GGN--T 1559 (2740)
T ss_pred CceEEEEEEEECCCCceEEEEEEEEeccccceEEcCCCccccccceEEEEEEccCCCceeEEEEeCCCCcccc-CCC--c
Confidence 7999765 56888887777788887543 2444455556666777888754434445578898865422110 000 0
Q ss_pred EEEEEccCCceEEEEeecccCCCCeEEE-EEEEcCCCceeEEEEEEEECCCCCCCCeEEeC-----------CCceeecC
Q psy574 240 IQAEITSDGMNLLKIQNVSRTAAPLIIL-CLGVNAAGSDLARASLTVSGPDPNPPPVILFG-----------PANQTLPL 307 (977)
Q Consensus 240 ~~~~~~~~g~s~L~I~~v~~~d~G~Y~~-C~a~n~~g~~~~~~~l~V~~~~~~~pp~i~~~-----------p~~~~v~~ 307 (977)
. ..+ ....|.|+. -.+.|..|....+..+.|...... -.|... +....+..
T Consensus 1560 ~----------~yT-----Y~spGtYtVtLTvtN~~Gs~~~T~~i~V~~~I~G--lqI~~~~~~gg~~~~~~~~~~~~~t 1622 (2740)
T TIGR00864 1560 I----------FYT-----FRSVGTFNIIVTAENDVGAAQASIFLFVLQEIEG--LQILGETAEGGGGGVQELDGCYFET 1622 (2740)
T ss_pred e----------EEe-----ecCCceEEEEEEEecCCCccceeEEEEEeecccc--eEEEeecccccCCcccccccceecc
Confidence 0 011 123566751 467788888877777777763110 111111 11123455
Q ss_pred CCcEEEEEEEcc--CceEEEEECCEEcCCCCcEEEecCc-eEEEeccCCCCCeE--EEEEEEcCCCceEEEEEEEEECCC
Q psy574 308 RSEARLRCQVRG--EGSVQWWRGEREVGSGPRVNVTGDG-SLVLTDVTKEDSGE--YTCVVKSPHGSASWSASLRFESPT 382 (977)
Q Consensus 308 g~~~~L~C~~~~--~p~i~W~~~g~~l~~~~~~~~~~~~-sl~I~~v~~~d~G~--Y~C~a~n~~G~~~~s~~l~v~~~~ 382 (977)
+..+.|.-.... ..++.|...+......... ...| ...+. ..+.|. ++..|.|..|....+..+.+.++-
T Consensus 1623 ~~~v~l~~~~~~GTnvsysW~~~~~n~~dg~~~--~~tGk~~~vt---~~~pG~Y~VtL~aSN~vG~~t~s~~i~v~epi 1697 (2740)
T TIGR00864 1623 NHTVQFHAGFKDGTNLSFSWNAILDNEPDGPAF--AGSGKGAKLN---PLEAGPCDIFLQAANLLGQATADCTIDFLEPA 1697 (2740)
T ss_pred CCEEEeeeccCCCCeeEEEEEEecCCCCCCccc--cccCceeEEe---cCCCceEEEEEEEeecccceeeEEEEEEEEEc
Confidence 566666654444 5578886621100000001 1111 12222 234455 456789999999888888887653
Q ss_pred CCCCcccCCCCCCCCCCCCCCCeEEeeCCCceEEEEEcCC
Q psy574 383 NPNIGFFRAPEPSTYPGPPTKPTLVNQTANGLTLAWSRNN 422 (977)
Q Consensus 383 ~~~~~~~~~~~~~~~p~~P~~~~v~~~~~~sv~lsW~~p~ 422 (977)
.-.. ..........+.+.++.+.....+.++..|....
T Consensus 1698 ~~L~--L~aS~~~aavn~~V~fs~~lt~GS~vty~W~~gd 1735 (2740)
T TIGR00864 1698 GNLM--LQASDNPAAVNALINLSAELAEGSGLQYRWFLEE 1735 (2740)
T ss_pred CceE--EeccCCcccCCCeEEEEEEecCCCCcEEEEEECC
Confidence 2211 0111112334444445544445556666666443
No 226
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.54 E-value=4.5e-07 Score=82.26 Aligned_cols=75 Identities=21% Similarity=0.370 Sum_probs=55.7
Q ss_pred cccceEEeCCCcEEEEEECCCC---CCCCeEEE---------------EeCCEEee---cCCCceEEEe-----cCcEEE
Q psy574 11 QPKSQRVAAGDTALLECGPPRG---HPEPTLVW---------------KKNGHPID---FENSKRLRLV-----DGTNLA 64 (977)
Q Consensus 11 ~p~~~~v~~G~~v~L~C~~~~g---~P~~~v~W---------------~k~g~~l~---~~~~~r~~~~-----~~g~L~ 64 (977)
.|..+.+..|++++|.|..... .+...|.| +++|+... ..-.+|+.+. .+.+|.
T Consensus 4 ~~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~ 83 (116)
T cd05879 4 TDREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIV 83 (116)
T ss_pred ccceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEE
Confidence 4667899999999999998332 24568999 33454442 1223577664 346899
Q ss_pred EcCCCCCCCeEEEEEEEecCc
Q psy574 65 IQDSRKTDDGRYQCVVKNVAG 85 (977)
Q Consensus 65 I~~v~~~D~G~Y~C~a~n~~g 85 (977)
|.+++.+|+|.|+|.+.|..+
T Consensus 84 I~nv~~sD~G~Y~C~v~n~p~ 104 (116)
T cd05879 84 IHNLDYTDNGTFTCDVKNPPD 104 (116)
T ss_pred EccCCcccCEEEEEEEEcCCC
Confidence 999999999999999998764
No 227
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.53 E-value=3e-07 Score=79.63 Aligned_cols=78 Identities=19% Similarity=0.305 Sum_probs=58.8
Q ss_pred ceEEeCCCeEEEEEEe-c----ccCceEEEEEECCeeCCCCc--eEE-eccceEEEccCccCCCeEEEEEEEeCCee---
Q psy574 108 DTTVSASSIIVFECSV-G----GDAVLTVHWKRLGSAMPEDR--MSV-LPSRSLQLSDVRLEDAGEYVCEAENAVGK--- 176 (977)
Q Consensus 108 ~~~v~~G~~v~l~C~v-~----g~p~~~i~W~k~~~~l~~~~--~~~-~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~--- 176 (977)
.+.+.+|.+..|.|.- . ..+.+.+.||||+.++.... +.. .....|.|.++..+|+|.|+|++.+..+.
T Consensus 4 ~~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~~~~~~~g~~y 83 (95)
T cd05897 4 PQILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSLKGSTYLHIIDVSLNDSGYYTCKLQFTHEGKKY 83 (95)
T ss_pred eeEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEecCCCCEEEEEEcChhhCEEEEEEEEEeeCCEEE
Confidence 3567889999999973 2 23667999999999987433 222 23468999999999999999999997653
Q ss_pred -EEEEEEEEE
Q psy574 177 -ISASATLTV 185 (977)
Q Consensus 177 -~~~~~~L~V 185 (977)
+++.+.|.|
T Consensus 84 ~vtr~~~l~v 93 (95)
T cd05897 84 NITRIIKLRI 93 (95)
T ss_pred EEEEEEEEEE
Confidence 455556654
No 228
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.52 E-value=5.3e-07 Score=78.15 Aligned_cols=73 Identities=21% Similarity=0.306 Sum_probs=54.3
Q ss_pred cceEEeCCCcEEEEEECCC----------CCCCCeEEEEeCCEEeecCC-----CceEEEecCcEEEEcCCCCCCCeEEE
Q psy574 13 KSQRVAAGDTALLECGPPR----------GHPEPTLVWKKNGHPIDFEN-----SKRLRLVDGTNLAIQDSRKTDDGRYQ 77 (977)
Q Consensus 13 ~~~~v~~G~~v~L~C~~~~----------g~P~~~v~W~k~g~~l~~~~-----~~r~~~~~~g~L~I~~v~~~D~G~Y~ 77 (977)
....+.+||++.|.|..-. ......+.|+|++..+.... ..|+... +..|.|.++..+|+|.|+
T Consensus 8 ~~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~-~~~Lwf~Pa~~eDSG~Y~ 86 (104)
T cd05896 8 KKYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKE-EDSIWFRPAELQDSGLYT 86 (104)
T ss_pred eeEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEe-CCEEEEEeCChhhCeEEE
Confidence 4578999999999997411 12234899999975553322 1355554 678999999999999999
Q ss_pred EEEEecCce
Q psy574 78 CVVKNVAGT 86 (977)
Q Consensus 78 C~a~n~~g~ 86 (977)
|++.|....
T Consensus 87 C~~rN~t~C 95 (104)
T cd05896 87 CVLRNSTYC 95 (104)
T ss_pred EEECCCCcc
Confidence 999987654
No 229
>KOG4258|consensus
Probab=98.50 E-value=8.8e-07 Score=100.90 Aligned_cols=136 Identities=24% Similarity=0.367 Sum_probs=107.7
Q ss_pred EEEEEeeEeCCCeEEEEEEec---CCCccceEEEEEEecCC-------------CCCceEEEEeec------CccceEEE
Q psy574 547 IELTEVKPMTSTSVKLTWEIL---NTDYIEGVYIYSRGLDP-------------PASVAMLTVLHA------GEASGFLV 604 (977)
Q Consensus 547 ~~~l~~~~~~~tsv~lsW~~p---~~~~i~~Y~v~y~~~~~-------------~~~~~~~~~~~~------~~~~~~~i 604 (977)
+..+.....+.++|.|+|..- .-..+.+|.+.|++... ...|....+..+ ....-+.+
T Consensus 491 ~l~~~~~~~~~dsi~lrW~~~~~~d~r~llg~~~~yKEaP~qNvT~~dg~~aCg~~~W~~~~v~~~~~~p~~~~~~~~~l 570 (1025)
T KOG4258|consen 491 VLQFSSTVTSADSILLRWERYQPPDMRDLLGFLLHYKEAPFQNVTEEDGRDACGSNSWNVVDVDPPDLIPNDGTHPGFLL 570 (1025)
T ss_pred eeeeeeEEeecceeEEEecccCCcchhhhheeeEeeccCCccccceecCccccccCcceEEeccCCcCCCccccccceeh
Confidence 456778889999999999976 34557799999986532 467887777654 12336889
Q ss_pred CCCCCCcEEEEEEEEeecc--eeC--CCCCceEEeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEE
Q psy574 605 TGLAHYSRYEFFLVPFFGS--VDG--KPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQII 680 (977)
Q Consensus 605 ~~L~p~t~Y~~~V~a~n~~--g~g--~~s~~~~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~ 680 (977)
.+|+|+|.|-+.|++.... +.. ..|+...++|..+.|+ ||..+-....+++.|.|+|+|| ..+||.|+.|.|.
T Consensus 571 ~~LkP~TqYAvfVkT~t~t~~~~~~~A~S~I~YvqT~~~~Ps-pPl~~ls~snsSsqi~l~W~pP--~~pNG~lt~Ylv~ 647 (1025)
T KOG4258|consen 571 DGLKPWTQYAVFVKTLTVTEAHEAYEAKSKIGYVQTLPDIPS-PPLDVLSKSNSSSQILLKWKPP--SQPNGNLTHYLVV 647 (1025)
T ss_pred hcCCccceeEEEEeeeehhhhccccccccceEEEEecCCCCC-CcchhhhccCcchheeEEecCC--CCCCCceeEEEEE
Confidence 9999999999999998432 221 3577888999999998 8877776666777899999999 9999999999999
Q ss_pred EEecC
Q psy574 681 VGGGN 685 (977)
Q Consensus 681 ~~~~~ 685 (977)
|...+
T Consensus 648 wer~~ 652 (1025)
T KOG4258|consen 648 WERQA 652 (1025)
T ss_pred EEecc
Confidence 98754
No 230
>cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
Probab=98.50 E-value=1.2e-06 Score=76.18 Aligned_cols=88 Identities=26% Similarity=0.403 Sum_probs=68.1
Q ss_pred CCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCcceEEEEec-CCcCeEEecCCCCCceEEEEEEEEcCC
Q psy574 644 VPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVS-ASTPTLLLTNLSAGIRYSVSLAATNRA 722 (977)
Q Consensus 644 ~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~~~~~~~~~-~~~~~~~l~~L~p~t~Y~~~V~A~~~~ 722 (977)
+|.++++...+.+++.|+|+++. ..++.+..|.|.+...+...+...... .+...+.+.+|.|++.|.|+|+|.+..
T Consensus 3 ~p~~~~~~~~~~~~~~v~W~~~~--~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~p~~~Y~~~v~a~~~~ 80 (93)
T cd00063 3 PPTNLRVTDVTSTSVTLSWTPPE--DDGGPITGYVVEYREKGSGDWKEVEVTPGSETSYTLTGLKPGTEYEFRVRAVNGG 80 (93)
T ss_pred CCCCcEEEEecCCEEEEEECCCC--CCCCcceeEEEEEeeCCCCCCEEeeccCCcccEEEEccccCCCEEEEEEEEECCC
Confidence 56778887777899999999984 444778899999987542233222222 467889999999999999999999999
Q ss_pred CcCCCCCceEE
Q psy574 723 GTGPYSRPALL 733 (977)
Q Consensus 723 G~g~~S~~~~~ 733 (977)
|.|.++..+.+
T Consensus 81 ~~~~~s~~~~~ 91 (93)
T cd00063 81 GESPPSESVTV 91 (93)
T ss_pred ccCCCcccccc
Confidence 99888875554
No 231
>KOG4802|consensus
Probab=98.50 E-value=1.4e-06 Score=91.14 Aligned_cols=169 Identities=15% Similarity=0.116 Sum_probs=106.6
Q ss_pred eeEeCCCeEEEEEEecCCCccceE----EEEEEec--C-C--CCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeec
Q psy574 552 VKPMTSTSVKLTWEILNTDYIEGV----YIYSRGL--D-P--PASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFG 622 (977)
Q Consensus 552 ~~~~~~tsv~lsW~~p~~~~i~~Y----~v~y~~~--~-~--~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~ 622 (977)
......+++.+.|..--+..+.-. +..|+.. . . ...|+.... ......+.+++++|+.-|+|+|.|.|.
T Consensus 154 y~r~~~g~~av~w~~~~~~~v~~~~~~vr~~w~~g~hase~~~thwQtv~~--t~~e~~~~~t~~rPgRwyefrvaavn~ 231 (516)
T KOG4802|consen 154 YFRRSRGSHAVDWKIESSLLVYYVHVEVRSHWGRGFHASELGPTHWQTVEK--TMEENTYIFTDMRPGRWYEFRVAAVNA 231 (516)
T ss_pred hhhhccCceeeeeeeccccceeeeehhhhhhhcccccccccccccceeeee--cCCCceeeeeecCcceeEEEEEeeeec
Confidence 445566778888987622222111 1122111 1 1 344554444 345568999999999999999999998
Q ss_pred cee---CCCCCceEEeccCCCCCCCCceeEEEEecCc---EEEEEeeCCCCCCCCeeeeEEEEEEEecC----CcceEEE
Q psy574 623 SVD---GKPSNLRAVRTLECEPSGVPQLTDPVLLNAT---SVLLKWKPPPVGTHNGVIRTYQIIVGGGN----NSALINM 692 (977)
Q Consensus 623 ~g~---g~~s~~~~~~T~~~~P~~~P~~v~~~~~~~~---sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~----~~~~~~~ 692 (977)
.|. +.+|......-...+|+ +|.++++.....+ ...|.|.|++ .+-+|..|+|.|...- .....+.
T Consensus 232 ~G~rGFs~PSkpf~ssk~pkaPp-~P~dl~l~~v~~dG~~~~~v~w~P~~---sdlPv~~Yki~Ws~~v~s~k~~m~tks 307 (516)
T KOG4802|consen 232 YGFRGFSEPSKPFPSSKNPKAPP-SPNDLKLIGVQFDGRYMLKVVWCPSK---SDLPVEKYKITWSLYVNSAKASMITKS 307 (516)
T ss_pred ccccccCCCCCCCCCCCCCCCCc-CcccceeeeeeecceEEEEEEeCCCC---CCCcceeeEEEeehhhhhhhhhccccc
Confidence 765 44555555555555665 7888887654332 3567777764 4567899999986531 1111111
Q ss_pred EecCCcCeEEecCCCCCceEEEEEEEEcCCCcCC
Q psy574 693 TVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGP 726 (977)
Q Consensus 693 ~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~~G~g~ 726 (977)
...-++..+.|++|.|+..|.|+|+|.+..|.+.
T Consensus 308 ~~~k~thq~si~~L~Pns~Y~VevqAi~y~g~~r 341 (516)
T KOG4802|consen 308 SYVKDTHQFSIKELLPNSSYYVEVQAISYLGSRR 341 (516)
T ss_pred ceeeccchhhhhhcCCCCeEEEEEEEEEeccCcc
Confidence 1111223444999999999999999999988764
No 232
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=98.50 E-value=1.1e-07 Score=76.81 Aligned_cols=59 Identities=31% Similarity=0.619 Sum_probs=44.6
Q ss_pred CCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEec-Cc----EEEEcCCCCCCCeEEEEEE
Q psy574 20 GDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD-GT----NLAIQDSRKTDDGRYQCVV 80 (977)
Q Consensus 20 G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~-~g----~L~I~~v~~~D~G~Y~C~a 80 (977)
|++++|.|.+..+.+...+.|+|++..+.... ...... .. .|.|.+++.+|+|.|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~--~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGS--TTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEEE--EEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCcc--eeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 89999999885567788999999988763222 222221 22 2999999999999999986
No 233
>KOG0196|consensus
Probab=98.48 E-value=2.8e-06 Score=96.64 Aligned_cols=135 Identities=21% Similarity=0.339 Sum_probs=104.4
Q ss_pred CceEEEeccCCCCCeEEEEEEEcCCCce----EEEEEEEEECCCCCCCcccCCCCCCCCCCCCCCCeEEeeCCCceEEEE
Q psy574 343 DGSLVLTDVTKEDSGEYTCVVKSPHGSA----SWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGLTLAW 418 (977)
Q Consensus 343 ~~sl~I~~v~~~d~G~Y~C~a~n~~G~~----~~s~~l~v~~~~~~~~~~~~~~~~~~~p~~P~~~~v~~~~~~sv~lsW 418 (977)
+.+.+|.++.+...++|...|.|....- ...+.+.|.. ....|++...++....+.+++.|+|
T Consensus 397 ~~~V~v~~L~ah~~YTFeV~AvNgVS~lsp~~~~~a~vnItt-------------~qa~ps~V~~~r~~~~~~~sitlsW 463 (996)
T KOG0196|consen 397 ETSVTVSDLLAHTNYTFEVEAVNGVSDLSPFPRQFASVNITT-------------NQAAPSPVSVLRQVSRTSDSITLSW 463 (996)
T ss_pred cceEEEeccccccccEEEEEEeecccccCCCCCcceeEEeec-------------cccCCCccceEEEeeeccCceEEec
Confidence 3468999999999999999999966432 2233333332 2255777788899999999999999
Q ss_pred EcCCCCCCcccceEEEEEeecCCCCCCCCCCCCcccEEEeceecCcCeEEEEccCCCCeEEEEEEEEcCCCCCCCCCCCc
Q psy574 419 SRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSD 498 (977)
Q Consensus 419 ~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~G~s~~S~~s~ 498 (977)
..|.. .++.+..|.|+|+...... ..+..+ ....+..++.+|+|++.|.|+|||....|.|..|....
T Consensus 464 ~~p~~-png~ildYEvky~ek~~~e---------~~~~~~--~t~~~~~ti~gL~p~t~YvfqVRarT~aG~G~~S~~~~ 531 (996)
T KOG0196|consen 464 SEPDQ-PNGVILDYEVKYYEKDEDE---------RSYSTL--KTKTTTATITGLKPGTVYVFQVRARTAAGYGPYSGKHE 531 (996)
T ss_pred CCCCC-CCCcceeEEEEEeeccccc---------cceeEE--ecccceEEeeccCCCcEEEEEEEEecccCCCCCCCcee
Confidence 99988 6677999999999876432 133333 45667889999999999999999999999999998776
Q ss_pred eEEe
Q psy574 499 EIVL 502 (977)
Q Consensus 499 ~~~~ 502 (977)
+-+.
T Consensus 532 fqT~ 535 (996)
T KOG0196|consen 532 FQTL 535 (996)
T ss_pred eeec
Confidence 6555
No 234
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.48 E-value=1.4e-06 Score=75.56 Aligned_cols=70 Identities=17% Similarity=0.399 Sum_probs=53.6
Q ss_pred cceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEee------cCCCceEEEec-Cc---EEEEcCCCCCCCeEEEEEEEe
Q psy574 13 KSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPID------FENSKRLRLVD-GT---NLAIQDSRKTDDGRYQCVVKN 82 (977)
Q Consensus 13 ~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~------~~~~~r~~~~~-~g---~L~I~~v~~~D~G~Y~C~a~n 82 (977)
+++++.+|++++|.|.+ .+.....+.|++-+..+- ...+.|+.... ++ +|.|.+++.+|+|.|.|.+..
T Consensus 5 ~nvtv~~G~ta~L~C~v-~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t 83 (95)
T cd05881 5 EDVTVVEGEVAIISCRV-KNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYT 83 (95)
T ss_pred CceEEcCCCcEEEEEEE-ccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEc
Confidence 46899999999999999 666667788887654331 12456777654 23 599999999999999999975
Q ss_pred c
Q psy574 83 V 83 (977)
Q Consensus 83 ~ 83 (977)
.
T Consensus 84 ~ 84 (95)
T cd05881 84 D 84 (95)
T ss_pred c
Confidence 3
No 235
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.46 E-value=4.7e-07 Score=78.60 Aligned_cols=68 Identities=21% Similarity=0.438 Sum_probs=51.2
Q ss_pred eEEeCCCeEEEEEEecccCceEEEEEECCee-CC--------------CCceEEe------ccceEEEccCccCCCeEEE
Q psy574 109 TTVSASSIIVFECSVGGDAVLTVHWKRLGSA-MP--------------EDRMSVL------PSRSLQLSDVRLEDAGEYV 167 (977)
Q Consensus 109 ~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~-l~--------------~~~~~~~------~~~~L~I~~v~~~D~G~Y~ 167 (977)
+.+.+|++|+|.|.+.+.+.+.|.|++++.. +. .+|+... .+.+|+|.+++.+|+|.|+
T Consensus 2 v~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~ 81 (94)
T cd07690 2 VLGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYI 81 (94)
T ss_pred eEeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEE
Confidence 3567899999999999889999999977632 11 1122111 1236999999999999999
Q ss_pred EEEEeCCee
Q psy574 168 CEAENAVGK 176 (977)
Q Consensus 168 C~a~n~~g~ 176 (977)
|.+.|..+.
T Consensus 82 C~v~~~~~~ 90 (94)
T cd07690 82 CEVEDKKEE 90 (94)
T ss_pred EEECCccce
Confidence 999887654
No 236
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.44 E-value=1.1e-06 Score=76.21 Aligned_cols=78 Identities=23% Similarity=0.333 Sum_probs=58.4
Q ss_pred ceEEeCCCeEEEEEEe-c----------ccCceEEEEEECCeeCCCCc------eEEe-ccceEEEccCccCCCeEEEEE
Q psy574 108 DTTVSASSIIVFECSV-G----------GDAVLTVHWKRLGSAMPEDR------MSVL-PSRSLQLSDVRLEDAGEYVCE 169 (977)
Q Consensus 108 ~~~v~~G~~v~l~C~v-~----------g~p~~~i~W~k~~~~l~~~~------~~~~-~~~~L~I~~v~~~D~G~Y~C~ 169 (977)
...+.+|+.+.|.|.. . ......+.|+|++..+.... .++. .+..|.|.++..+|+|.|+|+
T Consensus 9 ~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~eDSG~Y~C~ 88 (104)
T cd05896 9 KYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAELQDSGLYTCV 88 (104)
T ss_pred eEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCCEEEEEeCChhhCeEEEEE
Confidence 3468899999999986 1 12234799999975443211 1222 678999999999999999999
Q ss_pred EEeCCeeEEEEEEEEE
Q psy574 170 AENAVGKISASATLTV 185 (977)
Q Consensus 170 a~n~~g~~~~~~~L~V 185 (977)
+.|......-.+.|+|
T Consensus 89 ~rN~t~C~~~~i~l~V 104 (104)
T cd05896 89 LRNSTYCMKVSMSLTV 104 (104)
T ss_pred ECCCCcceEEEEEEEC
Confidence 9998877777777665
No 237
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.44 E-value=9.1e-07 Score=80.37 Aligned_cols=75 Identities=21% Similarity=0.356 Sum_probs=56.8
Q ss_pred eecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCE---E---ee------cCCCceEEEec-----CcEEEEcCCCCC
Q psy574 9 RVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGH---P---ID------FENSKRLRLVD-----GTNLAIQDSRKT 71 (977)
Q Consensus 9 ~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~---~---l~------~~~~~r~~~~~-----~g~L~I~~v~~~ 71 (977)
...|..+.+.+|++|+|.|.+ .+.+...+.|+|... . +. ....+|+.+.. ..+|.|.+++.+
T Consensus 2 ~q~~~~v~~~~G~~v~L~C~~-~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~ 80 (109)
T cd04983 2 TQSPQSLSVQEGENVTLNCNY-STSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLS 80 (109)
T ss_pred eecCCceEEcCCCCEEEEEEE-CCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHH
Confidence 456888999999999999998 555788999998431 1 11 02346776653 236999999999
Q ss_pred CCeEEEEEEEecC
Q psy574 72 DDGRYQCVVKNVA 84 (977)
Q Consensus 72 D~G~Y~C~a~n~~ 84 (977)
|+|.|.|.+.+..
T Consensus 81 DsG~Y~C~~~~~~ 93 (109)
T cd04983 81 DSAVYFCALSESG 93 (109)
T ss_pred HCEEEEEEEecCC
Confidence 9999999998653
No 238
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=98.44 E-value=4.3e-07 Score=73.43 Aligned_cols=57 Identities=35% Similarity=0.637 Sum_probs=45.9
Q ss_pred CCeEEEEEEe-cccCceEEEEEECCeeCCCCceEEe--ccc----eEEEccCccCCCeEEEEEE
Q psy574 114 SSIIVFECSV-GGDAVLTVHWKRLGSAMPEDRMSVL--PSR----SLQLSDVRLEDAGEYVCEA 170 (977)
Q Consensus 114 G~~v~l~C~v-~g~p~~~i~W~k~~~~l~~~~~~~~--~~~----~L~I~~v~~~D~G~Y~C~a 170 (977)
|++++|.|.+ .+.+...+.|+|++........... ... .|.|.+++.+|+|.|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 7899999999 7788899999999887765433222 112 2999999999999999986
No 239
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=98.42 E-value=9.5e-07 Score=75.94 Aligned_cols=83 Identities=13% Similarity=0.123 Sum_probs=57.6
Q ss_pred CCeEEEEEEEecCCC--CeEEEEEcCeeeeecCCCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEE
Q psy574 203 GRDAVFLCGIEGSPP--PSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLAR 280 (977)
Q Consensus 203 G~~v~L~C~~~g~p~--~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~ 280 (977)
|+++.|.|.+.+.+. ..+.|.+.+............+..........+.|.|.+++.+|+|.|+ |.|.|..|.....
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~-C~a~n~~~~~~~~ 79 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYT-CTASSGQMIAKNS 79 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEE-EEEeecceEeccc
Confidence 788999999987654 4779998776432111001101111111123459999999999999999 9999999988888
Q ss_pred EEEEEE
Q psy574 281 ASLTVS 286 (977)
Q Consensus 281 ~~l~V~ 286 (977)
+.|.|.
T Consensus 80 t~~~V~ 85 (86)
T cd05862 80 TIVIVH 85 (86)
T ss_pred EEEEEe
Confidence 888875
No 240
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=98.42 E-value=1.1e-06 Score=73.20 Aligned_cols=68 Identities=18% Similarity=0.250 Sum_probs=52.1
Q ss_pred EEEEEEe-cccCceEEEEEECCeeCCCCce------EEeccceEEEccCccCCCeEEEEEEEeCCee---EEEEEEEE
Q psy574 117 IVFECSV-GGDAVLTVHWKRLGSAMPEDRM------SVLPSRSLQLSDVRLEDAGEYVCEAENAVGK---ISASATLT 184 (977)
Q Consensus 117 v~l~C~v-~g~p~~~i~W~k~~~~l~~~~~------~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~---~~~~~~L~ 184 (977)
++|.|.. .|.|+++|+|||++.+|..... .+...++|.|.....+|.+.|+|+|.|..+. .+....|.
T Consensus 2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~~~~~~~~~l~ 79 (80)
T cd05885 2 VELTCLSPRSKPAATLRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVSQKKQTQYSLD 79 (80)
T ss_pred EEEEEeCCCccCCCeEEEEECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCCCCeeEEEEEe
Confidence 7899998 7789999999999999864211 1123357999999999999999999998764 44444444
No 241
>PHA03376 BARF1; Provisional
Probab=98.41 E-value=9.2e-06 Score=76.59 Aligned_cols=120 Identities=13% Similarity=0.241 Sum_probs=77.5
Q ss_pred ceEEeCCCeEEEEEEec---ccCceEEEEEECCe---e--C-------------CCCceEEe---ccceEEEccCccCCC
Q psy574 108 DTTVSASSIIVFECSVG---GDAVLTVHWKRLGS---A--M-------------PEDRMSVL---PSRSLQLSDVRLEDA 163 (977)
Q Consensus 108 ~~~v~~G~~v~l~C~v~---g~p~~~i~W~k~~~---~--l-------------~~~~~~~~---~~~~L~I~~v~~~D~ 163 (977)
.+....|+.+.|.|.-. ..+...|.|+|.+. . + ..++..+. .+-+|.|.+++.+|.
T Consensus 20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDd 99 (221)
T PHA03376 20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD 99 (221)
T ss_pred chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCC
Confidence 44677899999999863 22556899999532 1 0 01223331 334799999999999
Q ss_pred eEEEEEEEeCCeeEEEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCe
Q psy574 164 GEYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGN 227 (977)
Q Consensus 164 G~Y~C~a~n~~g~~~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~ 227 (977)
|.|+|...-........-.|++..|-.+.+.........-...++.|...|+|.|.+.|.-+..
T Consensus 100 GtY~C~fQkge~~~~k~ehLt~V~~~~Lsv~a~~~dFp~~~~~~i~C~sggfP~P~~~Wle~~~ 163 (221)
T PHA03376 100 GNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEG 163 (221)
T ss_pred ceEEEEEEcCCCceeeeeeeeeeecceEEEEeccccCCCCCeeEEEEecCCcCCchheeccccC
Confidence 9999999865544433334444433333322211111225567899998899999999998754
No 242
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.40 E-value=2.1e-06 Score=76.35 Aligned_cols=81 Identities=17% Similarity=0.216 Sum_probs=59.8
Q ss_pred CCCceEEeCCCeEEEEEEecccCceEEEEEECCee-----C---------------CCCceEEeccceEEEccCccCCCe
Q psy574 105 GPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSA-----M---------------PEDRMSVLPSRSLQLSDVRLEDAG 164 (977)
Q Consensus 105 ~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~-----l---------------~~~~~~~~~~~~L~I~~v~~~D~G 164 (977)
.+.+..+.+|+++.|.|.........+.|+|.... + ..+|..+..+++|.|.+++.+|+|
T Consensus 4 e~~p~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~D~G 83 (105)
T cd05774 4 ELVPPQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQKDTG 83 (105)
T ss_pred eccCCcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcccCE
Confidence 34455788999999999764344458999996321 1 235666678899999999999999
Q ss_pred EEEEEEEeCCe-eEEEEEEEEE
Q psy574 165 EYVCEAENAVG-KISASATLTV 185 (977)
Q Consensus 165 ~Y~C~a~n~~g-~~~~~~~L~V 185 (977)
.|+|.+.+... .....+.|.|
T Consensus 84 ~Y~~~v~~~~~~~~~~~v~l~V 105 (105)
T cd05774 84 FYTLQTITTNFQVEQATVHLQV 105 (105)
T ss_pred EEEEEEEeCCccEEEEEEEEEC
Confidence 99999998773 4555555543
No 243
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=98.37 E-value=1.9e-06 Score=72.83 Aligned_cols=77 Identities=23% Similarity=0.413 Sum_probs=57.0
Q ss_pred CceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCC-ceEEeccceEEEccCccCCCeEEEEEEEeC-CeeEEEEEEEE
Q psy574 107 KDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED-RMSVLPSRSLQLSDVRLEDAGEYVCEAENA-VGKISASATLT 184 (977)
Q Consensus 107 ~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~-~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~-~g~~~~~~~L~ 184 (977)
.+.++.+|+++.|.|...+. ...+.|++++..+..+ ++.. ....|.|.+++.+|+|.|+|.+.-. ....-....|.
T Consensus 4 ~~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~~~r~~~-~~~GLlI~~~~~~dsG~Y~C~s~E~gf~~~~~~y~l~ 81 (85)
T cd05872 4 KNRTVAPGADVVLPCQLRSN-LASPVWLFNGTPLNAQFSYRV-GTDGLLILVTSPEHSGTYRCYSEEEGFQQLVASYSLN 81 (85)
T ss_pred eEEEEecCCCEEEECCCCCC-CccEEEEECCcccCCCcceEE-eCCCCEEEECCHhhCEEEEEEEecCCCeEEEEEEEEE
Confidence 45688999999999999754 5699999999988653 4333 4555789999999999999998732 22233444444
Q ss_pred E
Q psy574 185 V 185 (977)
Q Consensus 185 V 185 (977)
|
T Consensus 82 v 82 (85)
T cd05872 82 V 82 (85)
T ss_pred E
Confidence 4
No 244
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.36 E-value=1.8e-06 Score=73.70 Aligned_cols=63 Identities=21% Similarity=0.409 Sum_probs=46.0
Q ss_pred cEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecC-------cEEEEcCCCCCCCeEEEEEEEecCc
Q psy574 22 TALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG-------TNLAIQDSRKTDDGRYQCVVKNVAG 85 (977)
Q Consensus 22 ~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~-------g~L~I~~v~~~D~G~Y~C~a~n~~g 85 (977)
.+.|.|.+..+.|.+.|.|+|||+.+.... .......+ +.|.|.....+|.|.|+|+|.|...
T Consensus 1 ~~~L~C~v~g~~P~~~v~W~~~g~~l~~~~-~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l 70 (82)
T cd05759 1 PYNLTCRARGAKPAAEIIWFRDGEVLDGAT-YSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEAL 70 (82)
T ss_pred CEEEEEEEeCccCCCEEEEEECCEEccCce-eeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccC
Confidence 368999995558999999999999884321 11111222 2588888888899999999998763
No 245
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.35 E-value=3.3e-06 Score=76.07 Aligned_cols=78 Identities=22% Similarity=0.369 Sum_probs=52.5
Q ss_pred CCCcEEEEEECCCCCC-----------CCeEEEEeC--CE---Ee---------ecCCCceEEEec------CcEEEEcC
Q psy574 19 AGDTALLECGPPRGHP-----------EPTLVWKKN--GH---PI---------DFENSKRLRLVD------GTNLAIQD 67 (977)
Q Consensus 19 ~G~~v~L~C~~~~g~P-----------~~~v~W~k~--g~---~l---------~~~~~~r~~~~~------~g~L~I~~ 67 (977)
.|++|+|.|......+ .+.|.|+|- |+ .+ ..+..+|+++.. +.+|+|.+
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n 80 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE 80 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence 4899999998732221 468999983 21 11 112235777643 46899999
Q ss_pred CCCCCCeEEEEEEEecCceeeeEeEEEEEE
Q psy574 68 SRKTDDGRYQCVVKNVAGTRESTDAVLRVL 97 (977)
Q Consensus 68 v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V~ 97 (977)
++.+|+|+|+|.+.++.. .++..+.|.|.
T Consensus 81 l~~sDsG~Y~C~V~~g~~-~~~~~v~l~v~ 109 (112)
T cd05900 81 LRSNDSGTYRCEVMHGIE-DNYDTVEVQVK 109 (112)
T ss_pred cccccCEEEEEEEecCCC-CceeEEEEEEE
Confidence 999999999999986533 23455555554
No 246
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=98.34 E-value=4.5e-06 Score=72.23 Aligned_cols=80 Identities=13% Similarity=0.160 Sum_probs=64.9
Q ss_pred CceEEeCCCeEEEEEEecccCceE-EEEEECCeeCCCC---ceEEec------cceEEEccCccCCCeEEEEEEEeCCee
Q psy574 107 KDTTVSASSIIVFECSVGGDAVLT-VHWKRLGSAMPED---RMSVLP------SRSLQLSDVRLEDAGEYVCEAENAVGK 176 (977)
Q Consensus 107 ~~~~v~~G~~v~l~C~v~g~p~~~-i~W~k~~~~l~~~---~~~~~~------~~~L~I~~v~~~D~G~Y~C~a~n~~g~ 176 (977)
..+.|.+|+++.|.|.+.++|.|+ +.|.+++..+... ...... ...|.+.++..+|.|.|+|.|.|....
T Consensus 11 ~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~ 90 (101)
T cd05860 11 TTIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDAS 90 (101)
T ss_pred ceEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCe
Confidence 355789999999999999999998 9999998765321 111111 257999999999999999999999988
Q ss_pred EEEEEEEEEe
Q psy574 177 ISASATLTVQ 186 (977)
Q Consensus 177 ~~~~~~L~V~ 186 (977)
.+..+.|.|.
T Consensus 91 ~s~tF~l~v~ 100 (101)
T cd05860 91 ASVTFNVYVN 100 (101)
T ss_pred EEEEEEEEEe
Confidence 8888888774
No 247
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.34 E-value=2.7e-06 Score=77.26 Aligned_cols=73 Identities=15% Similarity=0.328 Sum_probs=54.7
Q ss_pred eecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCC--EEee--------------cCCCceEEEecC----cEEEEcCC
Q psy574 9 RVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNG--HPID--------------FENSKRLRLVDG----TNLAIQDS 68 (977)
Q Consensus 9 ~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g--~~l~--------------~~~~~r~~~~~~----g~L~I~~v 68 (977)
.+.|..+.+.+|++|+|.|.+ .+ +...+.|+|.. +.+. .....|+....+ .+|.|.++
T Consensus 2 ~Q~p~~~~v~~G~~v~l~C~~-~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~ 79 (110)
T cd05899 2 TQSPRYLIKGRGQSVTLRCSQ-TS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSA 79 (110)
T ss_pred EECCCceEEcCCCcEEEEEEE-CC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCC
Confidence 467888999999999999998 45 67889999943 1110 111356655432 36999999
Q ss_pred CCCCCeEEEEEEEec
Q psy574 69 RKTDDGRYQCVVKNV 83 (977)
Q Consensus 69 ~~~D~G~Y~C~a~n~ 83 (977)
+++|+|.|.|.+.+.
T Consensus 80 ~~~Dsg~Y~Ca~~~~ 94 (110)
T cd05899 80 EPEDSAVYLCASSLG 94 (110)
T ss_pred ChhhCEEEEEEeeCC
Confidence 999999999999764
No 248
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.33 E-value=2.3e-06 Score=78.10 Aligned_cols=85 Identities=22% Similarity=0.347 Sum_probs=55.8
Q ss_pred cccceEEeCCCcEEEEEECCCCCC---CCeEEEEeC----CEE--ee-------c----CCCceEEEe-----cCcEEEE
Q psy574 11 QPKSQRVAAGDTALLECGPPRGHP---EPTLVWKKN----GHP--ID-------F----ENSKRLRLV-----DGTNLAI 65 (977)
Q Consensus 11 ~p~~~~v~~G~~v~L~C~~~~g~P---~~~v~W~k~----g~~--l~-------~----~~~~r~~~~-----~~g~L~I 65 (977)
.|..+.+.+|++++|.|......+ ...|.|++. +.. +. . .-..|+.+. .+.+|.|
T Consensus 4 ~~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I 83 (115)
T cd05880 4 TSKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILI 83 (115)
T ss_pred cCceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEE
Confidence 467899999999999998732222 246999751 221 20 0 112344433 2457999
Q ss_pred cCCCCCCCeEEEEEEEecCce-eeeEeEEEE
Q psy574 66 QDSRKTDDGRYQCVVKNVAGT-RESTDAVLR 95 (977)
Q Consensus 66 ~~v~~~D~G~Y~C~a~n~~g~-~~s~~~~l~ 95 (977)
.+++.+|+|.|.|.+.|..+. .....+.|+
T Consensus 84 ~~v~~~D~G~Y~C~v~~~~~~~~~~~~~~~~ 114 (115)
T cd05880 84 WQLQPTDNGTYTCQVKNPPDVHGPIGEIRLR 114 (115)
T ss_pred eeCChhhCEEEEEEEEeCCCCCCCccEEEEe
Confidence 999999999999999987553 223444554
No 249
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.31 E-value=2.4e-06 Score=77.10 Aligned_cols=75 Identities=17% Similarity=0.299 Sum_probs=54.6
Q ss_pred ceecccceEEeCCCcEEEEEECCCCCC-CCeEEEEeCC-----EEee-------cCCCceEEEecC---cEEEEcCCCCC
Q psy574 8 FRVQPKSQRVAAGDTALLECGPPRGHP-EPTLVWKKNG-----HPID-------FENSKRLRLVDG---TNLAIQDSRKT 71 (977)
Q Consensus 8 ~~~~p~~~~v~~G~~v~L~C~~~~g~P-~~~v~W~k~g-----~~l~-------~~~~~r~~~~~~---g~L~I~~v~~~ 71 (977)
+.+.|..+.+.+|++|+|.|.+ .+.. ...+.|+|.. +.|- .....|+....+ ..|.|.+++.+
T Consensus 3 v~Q~p~~~~v~~G~~v~L~C~~-~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~ 81 (106)
T cd04980 3 LTQSPATLSVSPGESATISCKA-SQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPE 81 (106)
T ss_pred EEECCCcEEECCCCCEEEEEEE-CCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChH
Confidence 5677888999999999999998 4444 5689999832 1111 112246665432 35999999999
Q ss_pred CCeEEEEEEEec
Q psy574 72 DDGRYQCVVKNV 83 (977)
Q Consensus 72 D~G~Y~C~a~n~ 83 (977)
|+|.|.|.+.+.
T Consensus 82 Dsg~Y~Ca~~~~ 93 (106)
T cd04980 82 DAAVYYCQQYGT 93 (106)
T ss_pred HCEEEEEEEeCC
Confidence 999999998653
No 250
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.29 E-value=8.6e-06 Score=70.71 Aligned_cols=76 Identities=13% Similarity=0.162 Sum_probs=59.7
Q ss_pred CCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCC---ccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEc
Q psy574 196 SDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGD---RVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVN 272 (977)
Q Consensus 196 ~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~---~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n 272 (977)
+++.+.+|++++|.|.+.+.....+.|++.+..+...... ...|+..........+|+|.+++.+|.|.|. |.+..
T Consensus 5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~-Cqv~t 83 (95)
T cd05881 5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYF-CQLYT 83 (95)
T ss_pred CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEE-EEEEc
Confidence 5678899999999999998877889999888555422211 3567887764445578999999999999999 98865
No 251
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.28 E-value=1.5e-06 Score=72.68 Aligned_cols=75 Identities=25% Similarity=0.634 Sum_probs=52.9
Q ss_pred cccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEe
Q psy574 5 REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKN 82 (977)
Q Consensus 5 ~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n 82 (977)
+|.+.+.+.......++ ++|.|.+..+.|.+.+.|+ +.... .....+.....++.|.|.++..+|.|.|+|+|.|
T Consensus 1 kP~I~~~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~-~~~~~-~~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 1 KPQISVPPPPVVTSGGS-VTLTCSAEGGPPPPSISWY-DSNPS-FNSNSRGSSSSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp ESEEEEESTSEEETTEE-EEEEEEESSEESSEEEEEE-TEEEE-EEEEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred CCEEEEcCCCcEeecee-EEEEEEEccccCCeEEEEE-ecCCc-eeeeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence 46777778777666666 9999999444448899999 22221 1111223333467899999999999999999986
No 252
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.27 E-value=5.7e-06 Score=74.61 Aligned_cols=78 Identities=27% Similarity=0.339 Sum_probs=53.5
Q ss_pred CCCcEEEEEECCCC-----CCCCeEEEEeCCE------E--ee--------cCCCceEEEec----CcEEEEcCCCCCCC
Q psy574 19 AGDTALLECGPPRG-----HPEPTLVWKKNGH------P--ID--------FENSKRLRLVD----GTNLAIQDSRKTDD 73 (977)
Q Consensus 19 ~G~~v~L~C~~~~g-----~P~~~v~W~k~g~------~--l~--------~~~~~r~~~~~----~g~L~I~~v~~~D~ 73 (977)
.|++|+|.|..... .....|.|+|... . +. ....+|+.+.. +.+|.|.+++.+|+
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds 80 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY 80 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence 48999999987222 2345799999531 1 10 11235666642 35799999999999
Q ss_pred eEEEEEEEecCceeeeEeEEEEEE
Q psy574 74 GRYQCVVKNVAGTRESTDAVLRVL 97 (977)
Q Consensus 74 G~Y~C~a~n~~g~~~s~~~~l~V~ 97 (977)
|.|+|.+.+..+. ....+.|.|.
T Consensus 81 G~Y~C~v~~~~~~-~~~~~~l~v~ 103 (106)
T cd05877 81 GRYRCEVIDGLED-ESVVVALRLR 103 (106)
T ss_pred EEEEEEEEecccc-eEEEEEEEEE
Confidence 9999999887664 3455666664
No 253
>PF10179 DUF2369: Uncharacterised conserved protein (DUF2369); InterPro: IPR019326 This is a proline-rich region of a group of proteins found from plants to fungi. The function is largely unknown, although the entry contains Fibronectin type-III domain-containing protein C4orf31, which promotes matrix assembly and cell adhesiveness.
Probab=98.27 E-value=0.00029 Score=73.68 Aligned_cols=133 Identities=17% Similarity=0.176 Sum_probs=79.0
Q ss_pred CccceEEECCCCCCcEEEEEEEEeecceeCCCCCceE-EeccCC---CCCCCCceeEEEEec----CcEEEEEeeCCCCC
Q psy574 597 GEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLRA-VRTLEC---EPSGVPQLTDPVLLN----ATSVLLKWKPPPVG 668 (977)
Q Consensus 597 ~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~g~~s~~~~-~~T~~~---~P~~~P~~v~~~~~~----~~sv~v~W~~p~~~ 668 (977)
..-..+.+.++.|+..|.+++.+.+... +....-+. ..|.+. -|. -|.+..+...+ =++++|.|.+-+ +
T Consensus 125 ~~~~~f~l~~~~~g~~Yliri~~~~~~e-~~~~~kV~aast~~~~~~~P~-LP~d~~Ik~f~~lrtC~SvTIAW~~s~-d 201 (300)
T PF10179_consen 125 EGLRHFRLSGVKPGERYLIRIQISNSDE-GPSTFKVQAASTNPSKQPYPQ-LPDDTSIKEFNKLRTCNSVTIAWLGSP-D 201 (300)
T ss_pred cceEEEEECCCCCCCeEEEEEEccCCCC-CceEEEEEEecCCcccCCCCC-CCCCCceeEEcCCcccceEEEEEecCC-C
Confidence 3457899999999999999998876432 22222233 334333 232 56677765443 378999999864 2
Q ss_pred CCCeeeeEEEEEEEecCCc-------------------c-e----EEEEecC-----Cc---CeEEecCCCCCceEEEEE
Q psy574 669 THNGVIRTYQIIVGGGNNS-------------------A-L----INMTVSA-----ST---PTLLLTNLSAGIRYSVSL 716 (977)
Q Consensus 669 ~~ng~i~~Y~v~~~~~~~~-------------------~-~----~~~~~~~-----~~---~~~~l~~L~p~t~Y~~~V 716 (977)
.+ ..|-|+.++.+.. . . .+..... .. ...+|.+|+||+.|.|.|
T Consensus 202 -~~---~kYCvy~~~~~~~~~~~~~~~~~n~C~~~~sr~k~e~v~Ck~~~~~n~~~~~~~~v~tetI~~L~PG~~Yl~dV 277 (300)
T PF10179_consen 202 -RS---IKYCVYRREEHSNYQERSVSRMPNQCLGPESRKKSEKVLCKYFHSPNSSEDPQRAVTTETIKGLKPGTTYLFDV 277 (300)
T ss_pred -CC---ceEEEEEEEecCchhhhhhcccCccCCCCCccccceEEEEEEEcCCccccccccccceeecccCCCCcEEEEEE
Confidence 22 3566655532100 0 0 0000111 12 344899999999999999
Q ss_pred EEEcCCCcCCCCCceEEeec
Q psy574 717 AATNRAGTGPYSRPALLSLT 736 (977)
Q Consensus 717 ~A~~~~G~g~~S~~~~~~t~ 736 (977)
.|.=..|-...=....++|.
T Consensus 278 ~~~~~~G~sl~Y~s~~VkTr 297 (300)
T PF10179_consen 278 YVNGPSGQSLPYRSKWVKTR 297 (300)
T ss_pred EEecCCCceeecceEEEEec
Confidence 99866665544444455443
No 254
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.26 E-value=4.9e-06 Score=73.89 Aligned_cols=75 Identities=23% Similarity=0.420 Sum_probs=50.4
Q ss_pred CcEEEEEECCCCC--CCCeEEEEeCCE----Ee-----------ecCCCceEEEec----CcEEEEcCCCCCCCeEEEEE
Q psy574 21 DTALLECGPPRGH--PEPTLVWKKNGH----PI-----------DFENSKRLRLVD----GTNLAIQDSRKTDDGRYQCV 79 (977)
Q Consensus 21 ~~v~L~C~~~~g~--P~~~v~W~k~g~----~l-----------~~~~~~r~~~~~----~g~L~I~~v~~~D~G~Y~C~ 79 (977)
++|+|.|...... ....|.|+|... .+ .....+|+.+.. +.+|.|.+++.+|+|.|.|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~ 80 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE 80 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence 5799999883332 345799999542 11 112245666553 46899999999999999999
Q ss_pred EEec-CceeeeEeEEEEE
Q psy574 80 VKNV-AGTRESTDAVLRV 96 (977)
Q Consensus 80 a~n~-~g~~~s~~~~l~V 96 (977)
+... .|. ....+.|.|
T Consensus 81 v~~~~~g~-~~~~~~l~V 97 (98)
T cd05718 81 FATFPQGN-RQKVTTLTV 97 (98)
T ss_pred EEeCCCCc-EEEEEEEEe
Confidence 8753 444 345556665
No 255
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.25 E-value=8e-06 Score=73.82 Aligned_cols=78 Identities=26% Similarity=0.377 Sum_probs=53.4
Q ss_pred CCcEEEEEECCCCCC---------CCeEEEEeC--CEEe------------ecCCCceEEEe------cCcEEEEcCCCC
Q psy574 20 GDTALLECGPPRGHP---------EPTLVWKKN--GHPI------------DFENSKRLRLV------DGTNLAIQDSRK 70 (977)
Q Consensus 20 G~~v~L~C~~~~g~P---------~~~v~W~k~--g~~l------------~~~~~~r~~~~------~~g~L~I~~v~~ 70 (977)
|++|+|.|......+ ...|.|+|. ++.. ...-.+|+.+. .+.+|+|.+++.
T Consensus 2 G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~~ 81 (110)
T cd05878 2 SSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLRS 81 (110)
T ss_pred CCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCCh
Confidence 899999998832221 367999994 2211 12234577763 235799999999
Q ss_pred CCCeEEEEEEEecCceeeeEeEEEEEEc
Q psy574 71 TDDGRYQCVVKNVAGTRESTDAVLRVLV 98 (977)
Q Consensus 71 ~D~G~Y~C~a~n~~g~~~s~~~~l~V~~ 98 (977)
+|+|.|.|.+...... ....+.|.|..
T Consensus 82 sD~G~Y~C~v~~~~~~-~~~~v~l~V~g 108 (110)
T cd05878 82 SDSGVYRCEVMHGIED-EQDTVPLEVTG 108 (110)
T ss_pred hhCEEEEEEEEeCCCc-ceEEEEEEEEE
Confidence 9999999999876433 34556777653
No 256
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=98.25 E-value=5.2e-06 Score=73.41 Aligned_cols=78 Identities=21% Similarity=0.363 Sum_probs=51.4
Q ss_pred CCcEEEEEECCCCCCCCeEEEEeCCE----Eee-----------cCCCceEEEe----cCcEEEEcCCCCCCCeEEEEEE
Q psy574 20 GDTALLECGPPRGHPEPTLVWKKNGH----PID-----------FENSKRLRLV----DGTNLAIQDSRKTDDGRYQCVV 80 (977)
Q Consensus 20 G~~v~L~C~~~~g~P~~~v~W~k~g~----~l~-----------~~~~~r~~~~----~~g~L~I~~v~~~D~G~Y~C~a 80 (977)
|++|+|.|..........|.|+|... .+. ....+|..+. .+.+|.|.+++.+|+|.|+|.+
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~ 80 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF 80 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence 89999999873333334799998421 111 1113344442 2457999999999999999998
Q ss_pred EecCceeeeEeEEEEEE
Q psy574 81 KNVAGTRESTDAVLRVL 97 (977)
Q Consensus 81 ~n~~g~~~s~~~~l~V~ 97 (977)
........+..+-|+|+
T Consensus 81 ~~~p~g~~~~~~~L~v~ 97 (97)
T cd05846 81 NTFPDGSKSGTMCLTVY 97 (97)
T ss_pred EeCCCCCeeeEEEEEEC
Confidence 76543335566677763
No 257
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=98.24 E-value=9.4e-06 Score=70.30 Aligned_cols=87 Identities=14% Similarity=0.174 Sum_probs=67.3
Q ss_pred CCcEEeeCCeEEEEEEEecCCCCe-EEEEEcCeeeeecCCCccccEEEEEcc--CCceEEEEeecccCCCCeEEEEEEEc
Q psy574 196 SDLRLEVGRDAVFLCGIEGSPPPS-TFWMLEGNRSLIYPGDRVDNIQAEITS--DGMNLLKIQNVSRTAAPLIILCLGVN 272 (977)
Q Consensus 196 ~~~~v~~G~~v~L~C~~~g~p~~~-i~W~~~g~~~~~~~~~~~~~~~~~~~~--~g~s~L~I~~v~~~d~G~Y~~C~a~n 272 (977)
..+.|.+|+++.|.|.+.++|+|. +.|.+++..+.... ...+...... ...+.|+|..++.+|.|.|+ |.|.|
T Consensus 11 ~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~---~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YT-f~a~N 86 (101)
T cd05860 11 TTIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTS---DHYVKSRNESNNRYVSELHLTRLKGTEGGTYT-FLVSN 86 (101)
T ss_pred ceEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccc---cceeEEeccCceEEEEEEEEeecChhhCcEEE-EEEEC
Confidence 345789999999999999999997 99999987653221 1112222111 13479999999999999999 99999
Q ss_pred CCCceeEEEEEEEE
Q psy574 273 AAGSDLARASLTVS 286 (977)
Q Consensus 273 ~~g~~~~~~~l~V~ 286 (977)
.....+.+..|.|+
T Consensus 87 ~~~~~s~tF~l~v~ 100 (101)
T cd05860 87 SDASASVTFNVYVN 100 (101)
T ss_pred CCCeEEEEEEEEEe
Confidence 99999888888775
No 258
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=98.23 E-value=6.2e-06 Score=75.65 Aligned_cols=75 Identities=24% Similarity=0.436 Sum_probs=52.1
Q ss_pred cccceEEeCCCcEEEEEECCCCCC---CCeEEEEeCC------EEee------------cCCCceEEEec-----CcEEE
Q psy574 11 QPKSQRVAAGDTALLECGPPRGHP---EPTLVWKKNG------HPID------------FENSKRLRLVD-----GTNLA 64 (977)
Q Consensus 11 ~p~~~~v~~G~~v~L~C~~~~g~P---~~~v~W~k~g------~~l~------------~~~~~r~~~~~-----~g~L~ 64 (977)
.|..+.+.+|++|+|.|......+ ...|.|++.. ..+. .....|+.+.. +.+|.
T Consensus 4 ~p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~ 83 (116)
T cd05715 4 TPREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIV 83 (116)
T ss_pred cCCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEE
Confidence 477899999999999998733322 2569998621 1110 01124455432 25799
Q ss_pred EcCCCCCCCeEEEEEEEecCc
Q psy574 65 IQDSRKTDDGRYQCVVKNVAG 85 (977)
Q Consensus 65 I~~v~~~D~G~Y~C~a~n~~g 85 (977)
|.+++.+|+|.|.|.+.|...
T Consensus 84 I~~v~~~D~G~Y~C~v~~~~~ 104 (116)
T cd05715 84 IHNLQFTDNGTYTCDVKNPPD 104 (116)
T ss_pred EeeCCcccCEEEEEEEEeCCC
Confidence 999999999999999998754
No 259
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.23 E-value=2.2e-06 Score=71.65 Aligned_cols=73 Identities=30% Similarity=0.464 Sum_probs=50.5
Q ss_pred CCeEEeCCCceEEeCCCeEEEEEEecccC-ceEEEEEEC-CeeCCCCceEEeccceEEEccCccCCCeEEEEEEEe
Q psy574 99 KPYIIRGPKDTTVSASSIIVFECSVGGDA-VLTVHWKRL-GSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAEN 172 (977)
Q Consensus 99 ~P~~~~~p~~~~v~~G~~v~l~C~v~g~p-~~~i~W~k~-~~~l~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n 172 (977)
+|.+...+.......+. ++|.|.+.+.+ .+.++|+.. ................|.|.++..+|.|.|+|.|.|
T Consensus 1 kP~I~~~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 1 KPQISVPPPPVVTSGGS-VTLTCSAEGGPPPPSISWYDSNPSFNSNSRGSSSSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp ESEEEEESTSEEETTEE-EEEEEEESSEESSEEEEEETEEEEEEEEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred CCEEEEcCCCcEeecee-EEEEEEEccccCCeEEEEEecCCceeeeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence 35666666555544444 99999998776 899999911 111111122233567899999999999999999987
No 260
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.23 E-value=5.6e-06 Score=72.51 Aligned_cols=72 Identities=19% Similarity=0.285 Sum_probs=54.7
Q ss_pred CCeEEEEEEecccCceEEEEEECCeeCC-------------------CCceEEeccceEEEccCccCCCeEEEEEEEeCC
Q psy574 114 SSIIVFECSVGGDAVLTVHWKRLGSAMP-------------------EDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAV 174 (977)
Q Consensus 114 G~~v~l~C~v~g~p~~~i~W~k~~~~l~-------------------~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~ 174 (977)
|++|+|.|.+.......|.|+|...... .+|..+..+++|.|.+++.+|+|.|+|.+....
T Consensus 1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~l~~~DsG~Y~c~v~~~~ 80 (92)
T cd05741 1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLLIQNLTKEDSGTYTLQIISTN 80 (92)
T ss_pred CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEEEccCCchhcEEEEEEEEcCC
Confidence 7899999998766777999999753321 134445567899999999999999999998776
Q ss_pred ee-EEEEEEEEE
Q psy574 175 GK-ISASATLTV 185 (977)
Q Consensus 175 g~-~~~~~~L~V 185 (977)
+. ....+.|.|
T Consensus 81 ~~~~~~~~~l~v 92 (92)
T cd05741 81 GVTENAKFFLRV 92 (92)
T ss_pred CcEEEEEEEEEC
Confidence 43 555565543
No 261
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.21 E-value=3.9e-06 Score=73.13 Aligned_cols=73 Identities=18% Similarity=0.309 Sum_probs=56.0
Q ss_pred CCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceE-EeccceEEEccCccCCCeEEEEEEEeC
Q psy574 99 KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMS-VLPSRSLQLSDVRLEDAGEYVCEAENA 173 (977)
Q Consensus 99 ~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~a~n~ 173 (977)
+|.+...|. ..|.+|++|+|.|... .+...+.|+|+|......... ......|.|.+++.+|+|.|+|.+.+.
T Consensus 2 kP~L~a~p~-~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~ 75 (91)
T cd05751 2 KPSLWAEPS-SVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVKKPPEPQNKAKFFIPSMKREHAGRYRCYYRSG 75 (91)
T ss_pred CCEEEecCC-CccCCCCcEEEEEecC-CCCCEEEEEECCCCccccccCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence 466666664 4788999999999885 567789999998865432111 113467999999999999999999886
No 262
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=98.21 E-value=9e-06 Score=70.74 Aligned_cols=75 Identities=15% Similarity=0.268 Sum_probs=51.4
Q ss_pred CcEEEEEECCCCCCCCeEEEEeCC----EEee-----------cCCCceEEEe----cCcEEEEcCCCCCCCeEEEEEEE
Q psy574 21 DTALLECGPPRGHPEPTLVWKKNG----HPID-----------FENSKRLRLV----DGTNLAIQDSRKTDDGRYQCVVK 81 (977)
Q Consensus 21 ~~v~L~C~~~~g~P~~~v~W~k~g----~~l~-----------~~~~~r~~~~----~~g~L~I~~v~~~D~G~Y~C~a~ 81 (977)
++|+|.|.........+|.|.|.. +.+. ....+|+.+. .+++|.|.|++.+|+|.|+|.+.
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~ 80 (96)
T cd05887 1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAV 80 (96)
T ss_pred CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEE
Confidence 478999998433445689998832 2221 1224577764 25789999999999999999986
Q ss_pred ec-CceeeeEeEEEEE
Q psy574 82 NV-AGTRESTDAVLRV 96 (977)
Q Consensus 82 n~-~g~~~s~~~~l~V 96 (977)
+. .|.. ...+.|+|
T Consensus 81 tfP~G~~-~~~~~l~~ 95 (96)
T cd05887 81 TFPLGNT-QSSTTVTV 95 (96)
T ss_pred eCCCCCe-eEEEEEEE
Confidence 54 4553 35556665
No 263
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.20 E-value=1e-05 Score=73.00 Aligned_cols=78 Identities=27% Similarity=0.375 Sum_probs=52.9
Q ss_pred CCCcEEEEEECCCC-----CCCCeEEEEeCC-----E-Eee----------cCCCceEEEe----cCcEEEEcCCCCCCC
Q psy574 19 AGDTALLECGPPRG-----HPEPTLVWKKNG-----H-PID----------FENSKRLRLV----DGTNLAIQDSRKTDD 73 (977)
Q Consensus 19 ~G~~v~L~C~~~~g-----~P~~~v~W~k~g-----~-~l~----------~~~~~r~~~~----~~g~L~I~~v~~~D~ 73 (977)
.|++|+|.|..... .....|.|+|.. . .+. .....|+.+. .+.+|+|.+++.+|+
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~ 80 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS 80 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence 48999999997322 225689999962 1 111 1122344332 245799999999999
Q ss_pred eEEEEEEEecCceeeeEeEEEEEE
Q psy574 74 GRYQCVVKNVAGTRESTDAVLRVL 97 (977)
Q Consensus 74 G~Y~C~a~n~~g~~~s~~~~l~V~ 97 (977)
|.|+|.+.+..+. ....+.|.|.
T Consensus 81 G~Y~C~v~~~~~~-~~~~v~L~V~ 103 (106)
T cd05714 81 GRYRCEVIDGIED-EQDTVELEVR 103 (106)
T ss_pred EEEEEEEEcCCCc-eEEEEEEEEE
Confidence 9999999987553 4566777775
No 264
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=98.18 E-value=4.3e-06 Score=76.49 Aligned_cols=90 Identities=20% Similarity=0.353 Sum_probs=61.0
Q ss_pred cceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCE-----Eee------------cCCCceEEEecC-----cEEE
Q psy574 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGH-----PID------------FENSKRLRLVDG-----TNLA 64 (977)
Q Consensus 7 ~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~-----~l~------------~~~~~r~~~~~~-----g~L~ 64 (977)
.+...|..+.+.+|++++|.|..........+.|++... .+. ....+|+.+..+ .+|.
T Consensus 3 ~vt~~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~ 82 (114)
T PF07686_consen 3 QVTQPPSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLT 82 (114)
T ss_dssp EEEEEESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEE
T ss_pred eEEEeCCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEE
Confidence 345568889999999999999983134556899998321 111 111344544432 3599
Q ss_pred EcCCCCCCCeEEEEEEEecCceeeeEeEEEEE
Q psy574 65 IQDSRKTDDGRYQCVVKNVAGTRESTDAVLRV 96 (977)
Q Consensus 65 I~~v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V 96 (977)
|.+++.+|+|.|.|.+...........+.|.|
T Consensus 83 i~~l~~~DsG~Y~C~v~~~~~~~~~~~~~L~V 114 (114)
T PF07686_consen 83 IKNLQPSDSGTYFCQVSTSNEQSFGNGTKLTV 114 (114)
T ss_dssp ESSESGGGEEEEEEEEEESSEEEEEEEEEEEE
T ss_pred ECCCCcCcCEEEEEEEEECCCCEECCcEEEEC
Confidence 99999999999999998874333344445554
No 265
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.18 E-value=1e-05 Score=72.06 Aligned_cols=76 Identities=24% Similarity=0.384 Sum_probs=50.3
Q ss_pred CCcEEEEEECCCCC--CCCeEEEEeCC--EEe---------e----cCCCceEEEec------CcEEEEcCCCCCCCeEE
Q psy574 20 GDTALLECGPPRGH--PEPTLVWKKNG--HPI---------D----FENSKRLRLVD------GTNLAIQDSRKTDDGRY 76 (977)
Q Consensus 20 G~~v~L~C~~~~g~--P~~~v~W~k~g--~~l---------~----~~~~~r~~~~~------~g~L~I~~v~~~D~G~Y 76 (977)
|++|+|.|...... -...|.|+|.. ..+ . .+..+|+.+.. +.+|+|.+++.+|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y 80 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY 80 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence 78999999873221 12368888744 111 0 01235666532 24799999999999999
Q ss_pred EEEEEecCceeeeEeEEEEE
Q psy574 77 QCVVKNVAGTRESTDAVLRV 96 (977)
Q Consensus 77 ~C~a~n~~g~~~s~~~~l~V 96 (977)
+|.+.+..+. ....+.|+|
T Consensus 81 ~C~v~~~~~~-~~~~i~l~v 99 (100)
T cd05713 81 TCFFQSDGFY-EEATVELKV 99 (100)
T ss_pred EEEEecCCcE-EEEEEEEEE
Confidence 9999987664 445556655
No 266
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.17 E-value=1.3e-05 Score=70.39 Aligned_cols=76 Identities=18% Similarity=0.379 Sum_probs=52.4
Q ss_pred CcEEEEEECCCCCCC---CeEEEEeC--C--EEe-----------ecCCCceEEEec----CcEEEEcCCCCCCCeEEEE
Q psy574 21 DTALLECGPPRGHPE---PTLVWKKN--G--HPI-----------DFENSKRLRLVD----GTNLAIQDSRKTDDGRYQC 78 (977)
Q Consensus 21 ~~v~L~C~~~~g~P~---~~v~W~k~--g--~~l-----------~~~~~~r~~~~~----~g~L~I~~v~~~D~G~Y~C 78 (977)
.+|+|.|......|. .+|.|.|. + +.+ .....+|+.+.. +++|.|.+++.+|+|.|+|
T Consensus 1 ~~v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~~~~~daSi~i~nl~~~D~G~Y~C 80 (99)
T cd05886 1 TDVVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKNPSFEDGTISLSRLELEDEGVYIC 80 (99)
T ss_pred CcEEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcCCCCCcceEEEcCCccccCEEEEE
Confidence 468999998433332 26999983 1 111 112346777653 4789999999999999999
Q ss_pred EEEe-cCceeeeEeEEEEEE
Q psy574 79 VVKN-VAGTRESTDAVLRVL 97 (977)
Q Consensus 79 ~a~n-~~g~~~s~~~~l~V~ 97 (977)
.+.+ ..|. .+..+.|+|+
T Consensus 81 ~v~t~P~g~-~~~~~~L~V~ 99 (99)
T cd05886 81 EFATFPTGN-RESQLNLTVY 99 (99)
T ss_pred EEEeCCCCC-eEEEEEEEEC
Confidence 9999 4564 4566777763
No 267
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.16 E-value=7.9e-06 Score=74.17 Aligned_cols=71 Identities=21% Similarity=0.425 Sum_probs=55.2
Q ss_pred eCCCceEEeCCCeEEEEEEecccCceEEEEEECCee---------------CCCCceEEe-----ccceEEEccCccCCC
Q psy574 104 RGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSA---------------MPEDRMSVL-----PSRSLQLSDVRLEDA 163 (977)
Q Consensus 104 ~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~---------------l~~~~~~~~-----~~~~L~I~~v~~~D~ 163 (977)
..|..+.+.+|++++|.|.+.+.+...+.|+|.... ...+|+.+. ....|.|.+++.+|+
T Consensus 3 q~~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Ds 82 (109)
T cd04983 3 QSPQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDS 82 (109)
T ss_pred ecCCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHC
Confidence 456778899999999999998777889999986321 123455443 235799999999999
Q ss_pred eEEEEEEEeCC
Q psy574 164 GEYVCEAENAV 174 (977)
Q Consensus 164 G~Y~C~a~n~~ 174 (977)
|.|.|.+.+..
T Consensus 83 G~Y~C~~~~~~ 93 (109)
T cd04983 83 AVYFCALSESG 93 (109)
T ss_pred EEEEEEEecCC
Confidence 99999998653
No 268
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.14 E-value=1.2e-05 Score=73.90 Aligned_cols=75 Identities=16% Similarity=0.273 Sum_probs=55.7
Q ss_pred ceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeC--CEE---ee-------cCCCceEEEec-----CcEEEEcCCCC
Q psy574 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKN--GHP---ID-------FENSKRLRLVD-----GTNLAIQDSRK 70 (977)
Q Consensus 8 ~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~--g~~---l~-------~~~~~r~~~~~-----~g~L~I~~v~~ 70 (977)
+.+.|..+.+.+|++|+|.|..........+.|+|. +.. +- ...++|+.+.. +-+|.|.+++.
T Consensus 2 v~q~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~ 81 (116)
T cd07706 2 VTQAQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQL 81 (116)
T ss_pred cEEeCCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCH
Confidence 467788999999999999998843335578999982 221 10 12346777652 23699999999
Q ss_pred CCCeEEEEEEEe
Q psy574 71 TDDGRYQCVVKN 82 (977)
Q Consensus 71 ~D~G~Y~C~a~n 82 (977)
+|+|.|.|.+..
T Consensus 82 ~Dsg~Y~C~~~~ 93 (116)
T cd07706 82 EDSAKYFCALST 93 (116)
T ss_pred HHCEEEEEEEEC
Confidence 999999999985
No 269
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.13 E-value=6.3e-06 Score=74.24 Aligned_cols=70 Identities=20% Similarity=0.313 Sum_probs=51.0
Q ss_pred eEEeCCCcEEEEEECCCCC-CCCeEEEEeCCE-----Eee----------cCCCceEEEecC-----cEEEEcCCCCCCC
Q psy574 15 QRVAAGDTALLECGPPRGH-PEPTLVWKKNGH-----PID----------FENSKRLRLVDG-----TNLAIQDSRKTDD 73 (977)
Q Consensus 15 ~~v~~G~~v~L~C~~~~g~-P~~~v~W~k~g~-----~l~----------~~~~~r~~~~~~-----g~L~I~~v~~~D~ 73 (977)
+.+.+|++|+|.|.+ ... +...+.|+|... .+. .....|+.+..+ -+|.|.+++.+|+
T Consensus 1 ~~v~~G~~v~L~C~~-~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~ 79 (105)
T cd00099 1 LSVSEGESVTLSCTY-SGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDS 79 (105)
T ss_pred CeecCCCCEEEEEEE-eCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHC
Confidence 368899999999998 443 677899998432 110 123456665432 2699999999999
Q ss_pred eEEEEEEEecCc
Q psy574 74 GRYQCVVKNVAG 85 (977)
Q Consensus 74 G~Y~C~a~n~~g 85 (977)
|.|.|.+.+..+
T Consensus 80 G~Y~C~v~~~~~ 91 (105)
T cd00099 80 AVYYCAVSLSGG 91 (105)
T ss_pred EEEEEEEecCCC
Confidence 999999987654
No 270
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=98.11 E-value=2.2e-05 Score=75.00 Aligned_cols=86 Identities=17% Similarity=0.349 Sum_probs=62.5
Q ss_pred ceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEee----------cCCCceEEE-e---cCcEEEEcCCCCCCCeEEEEE
Q psy574 14 SQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPID----------FENSKRLRL-V---DGTNLAIQDSRKTDDGRYQCV 79 (977)
Q Consensus 14 ~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~----------~~~~~r~~~-~---~~g~L~I~~v~~~D~G~Y~C~ 79 (977)
.+.|.+|++|+|.|....+...++|.|+|..+.+. .+-.+|+.+ . .+..|+|.+++.+|+|.|.|.
T Consensus 24 ~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~ 103 (189)
T PHA02987 24 KITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCI 103 (189)
T ss_pred EEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEE
Confidence 57899999999999984455678899999643321 222346664 2 246799999999999999999
Q ss_pred EEecC-ceeeeEeEEEEEEcC
Q psy574 80 VKNVA-GTRESTDAVLRVLVK 99 (977)
Q Consensus 80 a~n~~-g~~~s~~~~l~V~~~ 99 (977)
...-. |..++..+-|+|...
T Consensus 104 F~tfp~G~~~~gt~CLtVt~~ 124 (189)
T PHA02987 104 FNTLLSKNNEKGVVCLNVTTD 124 (189)
T ss_pred EEecCCCCCceeEEEEEEEch
Confidence 86543 435667778888754
No 271
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.11 E-value=1.1e-05 Score=68.81 Aligned_cols=69 Identities=22% Similarity=0.367 Sum_probs=50.0
Q ss_pred EEEEEEecc-cCceEEEEEECCeeCCCCceEE--ec-------cceEEEccCccCCCeEEEEEEEeCCee--EEEEEEEE
Q psy574 117 IVFECSVGG-DAVLTVHWKRLGSAMPEDRMSV--LP-------SRSLQLSDVRLEDAGEYVCEAENAVGK--ISASATLT 184 (977)
Q Consensus 117 v~l~C~v~g-~p~~~i~W~k~~~~l~~~~~~~--~~-------~~~L~I~~v~~~D~G~Y~C~a~n~~g~--~~~~~~L~ 184 (977)
+.|.|.+.| .|.+.|+|+|++..+....... .. ...|.|.....+|.|.|+|.|.|.... ..+++.|.
T Consensus 2 ~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~~l~ 81 (82)
T cd05759 2 YNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKETSVTLD 81 (82)
T ss_pred EEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcEEEEEEc
Confidence 689999966 6888999999998876532211 11 135778877788899999999987643 55555554
Q ss_pred E
Q psy574 185 V 185 (977)
Q Consensus 185 V 185 (977)
|
T Consensus 82 v 82 (82)
T cd05759 82 V 82 (82)
T ss_pred C
Confidence 3
No 272
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.10 E-value=1.8e-05 Score=70.33 Aligned_cols=75 Identities=24% Similarity=0.458 Sum_probs=49.6
Q ss_pred CcEEEEEECCCCCC--CCeEEEEeC--CE---Eee-----------cCCCceEEEec-----CcEEEEcCCCCCCCeEEE
Q psy574 21 DTALLECGPPRGHP--EPTLVWKKN--GH---PID-----------FENSKRLRLVD-----GTNLAIQDSRKTDDGRYQ 77 (977)
Q Consensus 21 ~~v~L~C~~~~g~P--~~~v~W~k~--g~---~l~-----------~~~~~r~~~~~-----~g~L~I~~v~~~D~G~Y~ 77 (977)
.+|+|.|......+ ...|.|+|. +. .+. .+..+|..+.. +++|+|.+++.+|+|.|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~ 80 (100)
T cd05888 1 GDTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYK 80 (100)
T ss_pred CCEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEE
Confidence 47899998832221 348999993 21 111 11225666652 568999999999999999
Q ss_pred EEEEe-cCceeeeEeEEEEE
Q psy574 78 CVVKN-VAGTRESTDAVLRV 96 (977)
Q Consensus 78 C~a~n-~~g~~~s~~~~l~V 96 (977)
|.+.+ ..|.. ...+.|.|
T Consensus 81 C~v~~~p~g~~-~~~~~L~V 99 (100)
T cd05888 81 CRVITFPAGNF-EAELVLTV 99 (100)
T ss_pred EEEEeCCCCCe-eeEEEEEe
Confidence 99987 44543 45566665
No 273
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=98.10 E-value=1.6e-05 Score=71.20 Aligned_cols=77 Identities=23% Similarity=0.345 Sum_probs=53.5
Q ss_pred CCcEEEEEECCC------CCCCCeEEEEeC-----CEE------------eecCCCceEEEec------CcEEEEcCCCC
Q psy574 20 GDTALLECGPPR------GHPEPTLVWKKN-----GHP------------IDFENSKRLRLVD------GTNLAIQDSRK 70 (977)
Q Consensus 20 G~~v~L~C~~~~------g~P~~~v~W~k~-----g~~------------l~~~~~~r~~~~~------~g~L~I~~v~~ 70 (977)
|+.|+|.|.... ....+.|.|+|. .+. ...+..+|..+.. +.+|.|.+++.
T Consensus 2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~ 81 (110)
T cd05902 2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRY 81 (110)
T ss_pred CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCH
Confidence 789999998521 112478999984 111 1134457888754 35799999999
Q ss_pred CCCeEEEEEEEecCceeeeEeEEEEEE
Q psy574 71 TDDGRYQCVVKNVAGTRESTDAVLRVL 97 (977)
Q Consensus 71 ~D~G~Y~C~a~n~~g~~~s~~~~l~V~ 97 (977)
+|+|.|+|.+.... ..+...+.|.|.
T Consensus 82 ~D~G~Y~C~v~~g~-~~~~~~v~L~V~ 107 (110)
T cd05902 82 SDSGTYRCEVVLGI-NDEQDTVPLEVT 107 (110)
T ss_pred HHCEEEEEEEEECC-cccEEEEEEEEE
Confidence 99999999998854 334456677765
No 274
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=98.08 E-value=9.4e-06 Score=71.04 Aligned_cols=75 Identities=15% Similarity=0.234 Sum_probs=52.3
Q ss_pred cccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCC-CceEEEecCcEEEEcCCCCCCCeEEEEEEEe
Q psy574 5 REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFEN-SKRLRLVDGTNLAIQDSRKTDDGRYQCVVKN 82 (977)
Q Consensus 5 ~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~-~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n 82 (977)
+|.+.+.| ...|.+|++|+|.|..+. +...+.|+|+|....... .....-.....+.|.+++.+|+|.|+|....
T Consensus 1 kP~l~a~p-~~vV~~G~~VTL~C~~~~--~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~~ 76 (94)
T cd05711 1 KPFLSAHP-SPVVPSGENVTLQCHSDI--RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGSY 76 (94)
T ss_pred CCEEEecC-CCccCCCCeEEEEEecCC--CCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEEC
Confidence 46677777 466899999999998733 456899999887642110 0000001123689999999999999999753
No 275
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.07 E-value=1.6e-05 Score=72.28 Aligned_cols=70 Identities=21% Similarity=0.428 Sum_probs=53.2
Q ss_pred EeCCCceEEeCCCeEEEEEEecccCceEEEEEECCe--eC-----------------CCCceEEe----ccceEEEccCc
Q psy574 103 IRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGS--AM-----------------PEDRMSVL----PSRSLQLSDVR 159 (977)
Q Consensus 103 ~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~--~l-----------------~~~~~~~~----~~~~L~I~~v~ 159 (977)
...|....+.+|++++|.|.+.+ +...+.|||... .+ ..+++... ....|.|.+++
T Consensus 2 ~Q~p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~ 80 (110)
T cd05899 2 TQSPRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAE 80 (110)
T ss_pred EECCCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCC
Confidence 35677889999999999999977 677899999642 11 12344332 23479999999
Q ss_pred cCCCeEEEEEEEeC
Q psy574 160 LEDAGEYVCEAENA 173 (977)
Q Consensus 160 ~~D~G~Y~C~a~n~ 173 (977)
.+|+|.|.|.+.+.
T Consensus 81 ~~Dsg~Y~Ca~~~~ 94 (110)
T cd05899 81 PEDSAVYLCASSLG 94 (110)
T ss_pred hhhCEEEEEEeeCC
Confidence 99999999999864
No 276
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.07 E-value=1.2e-05 Score=73.83 Aligned_cols=73 Identities=16% Similarity=0.340 Sum_probs=54.4
Q ss_pred eecccceEEeCCCcEEEEEECCCC--CCCCeEEEEeC--CEE----e--e---------cCCCceEEEecC-----cEEE
Q psy574 9 RVQPKSQRVAAGDTALLECGPPRG--HPEPTLVWKKN--GHP----I--D---------FENSKRLRLVDG-----TNLA 64 (977)
Q Consensus 9 ~~~p~~~~v~~G~~v~L~C~~~~g--~P~~~v~W~k~--g~~----l--~---------~~~~~r~~~~~~-----g~L~ 64 (977)
.+.|..+.+.+|++|+|.|.+ .+ .+.+.+.|+|. |.. + . .....|+.+..+ ..|.
T Consensus 2 ~Q~p~~~~~~~G~~v~l~C~~-~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~ 80 (116)
T cd04982 2 EQPQLSITREESKSVTISCKV-SGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLT 80 (116)
T ss_pred CCcCCeEEeCCCCCEEEEEEE-eCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEE
Confidence 456888999999999999998 44 57788999994 211 1 0 112456766532 3599
Q ss_pred EcCCCCCCCeEEEEEEEe
Q psy574 65 IQDSRKTDDGRYQCVVKN 82 (977)
Q Consensus 65 I~~v~~~D~G~Y~C~a~n 82 (977)
|.+++.+|+|.|.|.+..
T Consensus 81 I~~~~~~Dsg~Y~C~~~~ 98 (116)
T cd04982 81 IQNLEKEDSATYYCAYWE 98 (116)
T ss_pred EEECCHHHCEEEEEEEec
Confidence 999999999999999864
No 277
>cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
Probab=98.06 E-value=2.7e-05 Score=67.57 Aligned_cols=85 Identities=27% Similarity=0.341 Sum_probs=65.3
Q ss_pred EEEEeeEeCCCeEEEEEEecCC--CccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeeccee
Q psy574 548 ELTEVKPMTSTSVKLTWEILNT--DYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVD 625 (977)
Q Consensus 548 ~~l~~~~~~~tsv~lsW~~p~~--~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~ 625 (977)
.++.+......++.|+|+++.. ..+.+|.|+|+... ...|....... .....+.|.+|.|++.|.|+|+|.+..+.
T Consensus 5 ~~~~~~~~~~~~~~v~W~~~~~~~~~~~~y~v~~~~~~-~~~~~~~~~~~-~~~~~~~i~~l~p~~~Y~~~v~a~~~~~~ 82 (93)
T cd00063 5 TNLRVTDVTSTSVTLSWTPPEDDGGPITGYVVEYREKG-SGDWKEVEVTP-GSETSYTLTGLKPGTEYEFRVRAVNGGGE 82 (93)
T ss_pred CCcEEEEecCCEEEEEECCCCCCCCcceeEEEEEeeCC-CCCCEEeeccC-CcccEEEEccccCCCEEEEEEEEECCCcc
Confidence 3467777889999999999832 56789999999875 44565544322 36688999999999999999999998787
Q ss_pred CCCCCceEE
Q psy574 626 GKPSNLRAV 634 (977)
Q Consensus 626 g~~s~~~~~ 634 (977)
|.++....+
T Consensus 83 ~~~s~~~~~ 91 (93)
T cd00063 83 SPPSESVTV 91 (93)
T ss_pred CCCcccccc
Confidence 766654443
No 278
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=98.06 E-value=3.7e-05 Score=66.96 Aligned_cols=66 Identities=21% Similarity=0.421 Sum_probs=47.6
Q ss_pred CcEEEEEECCCCCCCCeEEEEeCCE----Ee-----------ecCCCceEEEec----CcEEEEcCCCCCCCeEEEEEEE
Q psy574 21 DTALLECGPPRGHPEPTLVWKKNGH----PI-----------DFENSKRLRLVD----GTNLAIQDSRKTDDGRYQCVVK 81 (977)
Q Consensus 21 ~~v~L~C~~~~g~P~~~v~W~k~g~----~l-----------~~~~~~r~~~~~----~g~L~I~~v~~~D~G~Y~C~a~ 81 (977)
+.++|.|..+......+|.|.|-.. .+ .....+|+.+.. +++|.|.|++.+|+|.|+|.+.
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~ 80 (96)
T cd05889 1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLV 80 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEE
Confidence 5799999985444567899998321 12 122246777653 5789999999999999999997
Q ss_pred ec-Cce
Q psy574 82 NV-AGT 86 (977)
Q Consensus 82 n~-~g~ 86 (977)
.. .|.
T Consensus 81 t~P~g~ 86 (96)
T cd05889 81 TYPQGS 86 (96)
T ss_pred eCCCCC
Confidence 65 354
No 279
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.05 E-value=2.5e-05 Score=69.59 Aligned_cols=72 Identities=24% Similarity=0.322 Sum_probs=51.3
Q ss_pred CCeEEEEEEeccc---CceEEEEEECCee-----------CC-------CCceEEe------ccceEEEccCccCCCeEE
Q psy574 114 SSIIVFECSVGGD---AVLTVHWKRLGSA-----------MP-------EDRMSVL------PSRSLQLSDVRLEDAGEY 166 (977)
Q Consensus 114 G~~v~l~C~v~g~---p~~~i~W~k~~~~-----------l~-------~~~~~~~------~~~~L~I~~v~~~D~G~Y 166 (977)
|++++|.|..... ....+.|+|.... .. .+|..+. .+.+|.|.+++.+|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y 80 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY 80 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence 7889999998422 2346888886421 11 1244332 235799999999999999
Q ss_pred EEEEEeCCeeEEEEEEEEE
Q psy574 167 VCEAENAVGKISASATLTV 185 (977)
Q Consensus 167 ~C~a~n~~g~~~~~~~L~V 185 (977)
+|.+.+..+..++.+.|+|
T Consensus 81 ~C~v~~~~~~~~~~i~l~v 99 (100)
T cd05713 81 TCFFQSDGFYEEATVELKV 99 (100)
T ss_pred EEEEecCCcEEEEEEEEEE
Confidence 9999988777777788776
No 280
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.03 E-value=1.8e-05 Score=70.11 Aligned_cols=66 Identities=20% Similarity=0.386 Sum_probs=47.3
Q ss_pred EEeCCCcEEEEEECCCCC--CCCeEEEEeCC---EE--ee-------cCCCceEEEecC---cEEEEcCCCCCCCeEEEE
Q psy574 16 RVAAGDTALLECGPPRGH--PEPTLVWKKNG---HP--ID-------FENSKRLRLVDG---TNLAIQDSRKTDDGRYQC 78 (977)
Q Consensus 16 ~v~~G~~v~L~C~~~~g~--P~~~v~W~k~g---~~--l~-------~~~~~r~~~~~~---g~L~I~~v~~~D~G~Y~C 78 (977)
.+.+|++|+|.|.+ .+. ....+.|+|.. .+ |- .....|+....+ ..|.|.+++.+|+|.|.|
T Consensus 2 ~v~~G~~v~l~C~~-~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C 80 (98)
T cd04984 2 SVSPGETVTITCTG-SSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYC 80 (98)
T ss_pred ccCCCCCEEEEEEE-cCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEE
Confidence 57899999999998 443 55679999832 11 11 112346665533 359999999999999999
Q ss_pred EEEe
Q psy574 79 VVKN 82 (977)
Q Consensus 79 ~a~n 82 (977)
.+.+
T Consensus 81 ~~~~ 84 (98)
T cd04984 81 QVWD 84 (98)
T ss_pred EEcc
Confidence 9864
No 281
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=98.02 E-value=1.8e-05 Score=69.04 Aligned_cols=80 Identities=13% Similarity=0.241 Sum_probs=55.7
Q ss_pred ccceecccceEEeCCCcEEEEEECCCCCCCCe--EEEEeCCEEeecCCCceE---EEecCcEEEEcCCCCCCCeEEEEEE
Q psy574 6 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPT--LVWKKNGHPIDFENSKRL---RLVDGTNLAIQDSRKTDDGRYQCVV 80 (977)
Q Consensus 6 ~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~--v~W~k~g~~l~~~~~~r~---~~~~~g~L~I~~v~~~D~G~Y~C~a 80 (977)
+.+.+.+....+.+|+.++|.|.+..+.|.+. |.|+|+++.+........ ......+|.+.--+.+|...|+|+|
T Consensus 2 ~~V~l~~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~~~r~D~g~~~sC~A 81 (100)
T cd05755 2 DSVELSPLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITITVDREDHGANFSCET 81 (100)
T ss_pred ceEEEecCCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEecchhhCCcEEEEEE
Confidence 45667777778899999999999988899987 799999999943211000 0111235776544444444999999
Q ss_pred EecCc
Q psy574 81 KNVAG 85 (977)
Q Consensus 81 ~n~~g 85 (977)
.+..+
T Consensus 82 ~l~l~ 86 (100)
T cd05755 82 ELDLR 86 (100)
T ss_pred EeccC
Confidence 98654
No 282
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=98.00 E-value=2.7e-05 Score=69.05 Aligned_cols=69 Identities=25% Similarity=0.369 Sum_probs=50.5
Q ss_pred eEEeCCCcEEEEEECCCCCCCCeEEEEeCCE-----Ee------ecCCCceEEEecC-----cEEEEcCCCCCCCeEEEE
Q psy574 15 QRVAAGDTALLECGPPRGHPEPTLVWKKNGH-----PI------DFENSKRLRLVDG-----TNLAIQDSRKTDDGRYQC 78 (977)
Q Consensus 15 ~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~-----~l------~~~~~~r~~~~~~-----g~L~I~~v~~~D~G~Y~C 78 (977)
+.+.+|++|+|.|..........+.|+|... .| .....+|+.+..+ -+|.|.+++.+|+|.|.|
T Consensus 2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C 81 (98)
T cd05716 2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWC 81 (98)
T ss_pred EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEE
Confidence 5789999999999884334667899998531 11 0123456666422 269999999999999999
Q ss_pred EEEec
Q psy574 79 VVKNV 83 (977)
Q Consensus 79 ~a~n~ 83 (977)
.+...
T Consensus 82 ~~~~~ 86 (98)
T cd05716 82 GVGDD 86 (98)
T ss_pred EcccC
Confidence 98765
No 283
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=97.99 E-value=5e-05 Score=63.54 Aligned_cols=74 Identities=19% Similarity=0.270 Sum_probs=50.4
Q ss_pred EEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEec-----CcEEEEcCCCCCCCeEEEEEEEecCceeeeEeEEEEEE
Q psy574 23 ALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD-----GTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVL 97 (977)
Q Consensus 23 v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~-----~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V~ 97 (977)
+.|.|....+.|.+.|.|+|+++++...... ..... ...|.|..-+.+|...|+|+|.|..-........|.|.
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~-~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~ 80 (82)
T cd05883 2 IELNCTAMASKPAATIRWFKGNKELTGKSTV-EETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQ 80 (82)
T ss_pred EEEEEEecCCCCCCEEEEEECCEECcCcccc-eeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEEE
Confidence 6899999899999999999999999532110 11111 13578866666666699999998763333444566654
No 284
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=97.98 E-value=4.6e-05 Score=67.58 Aligned_cols=72 Identities=33% Similarity=0.652 Sum_probs=52.5
Q ss_pred CeEEEEEEecccC---ceEEEEEECCee---------------CC---CCceEEe----ccceEEEccCccCCCeEEEEE
Q psy574 115 SIIVFECSVGGDA---VLTVHWKRLGSA---------------MP---EDRMSVL----PSRSLQLSDVRLEDAGEYVCE 169 (977)
Q Consensus 115 ~~v~l~C~v~g~p---~~~i~W~k~~~~---------------l~---~~~~~~~----~~~~L~I~~v~~~D~G~Y~C~ 169 (977)
++|+|.|.....+ ...|.|+|.... .. .+|..+. .+.+|.|.+++.+|+|.|.|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~ 80 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE 80 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence 4789999986543 457999996531 00 1233332 356899999999999999999
Q ss_pred EEe-CCeeEEEEEEEEEe
Q psy574 170 AEN-AVGKISASATLTVQ 186 (977)
Q Consensus 170 a~n-~~g~~~~~~~L~V~ 186 (977)
+.. ..|..++.+.|.|.
T Consensus 81 v~~~~~g~~~~~~~l~V~ 98 (98)
T cd05718 81 FATFPQGNRQKVTTLTVL 98 (98)
T ss_pred EEeCCCCcEEEEEEEEeC
Confidence 875 66778888888873
No 285
>smart00060 FN3 Fibronectin type 3 domain. One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.
Probab=97.98 E-value=6.2e-05 Score=63.36 Aligned_cols=77 Identities=29% Similarity=0.408 Sum_probs=53.0
Q ss_pred CCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCC---cceEEEEecCCcCeEEecCCCCCceEEEEEEEEc
Q psy574 644 VPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNN---SALINMTVSASTPTLLLTNLSAGIRYSVSLAATN 720 (977)
Q Consensus 644 ~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~---~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~~ 720 (977)
+|.++.+...+.+++.|+|++|. ..++ .+|.+.|..... ..............+.+.+|+|++.|.|+|+|.+
T Consensus 3 ~p~~~~~~~~~~~~~~v~W~~~~--~~~~--~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~v~v~a~~ 78 (83)
T smart00060 3 PPSNLRVTDVTSTSVTLSWEPPP--DDGI--TGYIVGYRVEYREEGSSWKEVNVTPSSTSYTLTGLKPGTEYEFRVRAVN 78 (83)
T ss_pred CCCcEEEEEEeCCEEEEEECCCC--CCCC--CccEEEEEEEEecCCCccEEEEecCCccEEEEeCcCCCCEEEEEEEEEc
Confidence 34557777777779999999774 2222 567776665331 1233333333367899999999999999999999
Q ss_pred CCCc
Q psy574 721 RAGT 724 (977)
Q Consensus 721 ~~G~ 724 (977)
..|.
T Consensus 79 ~~g~ 82 (83)
T smart00060 79 GAGE 82 (83)
T ss_pred ccCC
Confidence 7664
No 286
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=97.97 E-value=6.5e-07 Score=73.22 Aligned_cols=21 Identities=10% Similarity=0.113 Sum_probs=11.9
Q ss_pred CCCCceeeccccccccCCCCC
Q psy574 815 AGPGLLATPISLKAASGLPHP 835 (977)
Q Consensus 815 ~g~~~~~~p~~~~~~~~~~~~ 835 (977)
.|.++|+||++||||++|+|.
T Consensus 48 ~~~ktYIDP~TYEDP~qAV~e 68 (75)
T PF14575_consen 48 PGVKTYIDPHTYEDPNQAVRE 68 (75)
T ss_dssp --------GGGSSSHHHHHHH
T ss_pred CCceeecCcccccCHHHHHHH
Confidence 357899999999999999875
No 287
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=97.97 E-value=5.1e-05 Score=68.40 Aligned_cols=85 Identities=14% Similarity=0.157 Sum_probs=60.6
Q ss_pred eCCeEEEEEEEecCC------CCeEEEEEcCe------eeeecC-------CCccccEEEEEccCCceEEEEeecccCCC
Q psy574 202 VGRDAVFLCGIEGSP------PPSTFWMLEGN------RSLIYP-------GDRVDNIQAEITSDGMNLLKIQNVSRTAA 262 (977)
Q Consensus 202 ~G~~v~L~C~~~g~p------~~~i~W~~~g~------~~~~~~-------~~~~~~~~~~~~~~g~s~L~I~~v~~~d~ 262 (977)
.|++++|.|.....| ...|.|+|... .+.... ....+|+.+.....+...|.|.+++.+|+
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds 80 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY 80 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence 489999999987653 34699999642 111111 11234565543323456899999999999
Q ss_pred CeEEEEEEEcCCCceeEEEEEEEEC
Q psy574 263 PLIILCLGVNAAGSDLARASLTVSG 287 (977)
Q Consensus 263 G~Y~~C~a~n~~g~~~~~~~l~V~~ 287 (977)
|.|. |.+.+..+.....+.|.|..
T Consensus 81 G~Y~-C~v~~~~~~~~~~~~l~v~~ 104 (106)
T cd05877 81 GRYR-CEVIDGLEDESVVVALRLRG 104 (106)
T ss_pred EEEE-EEEEecccceEEEEEEEEEE
Confidence 9999 99999888888888888865
No 288
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=97.94 E-value=5.8e-05 Score=68.01 Aligned_cols=85 Identities=16% Similarity=0.244 Sum_probs=58.7
Q ss_pred eCCeEEEEEEEecCC------CCeEEEEEcC-----e-eeeecCCC-------ccccEEEEEccCCceEEEEeecccCCC
Q psy574 202 VGRDAVFLCGIEGSP------PPSTFWMLEG-----N-RSLIYPGD-------RVDNIQAEITSDGMNLLKIQNVSRTAA 262 (977)
Q Consensus 202 ~G~~v~L~C~~~g~p------~~~i~W~~~g-----~-~~~~~~~~-------~~~~~~~~~~~~g~s~L~I~~v~~~d~ 262 (977)
.|++++|.|.....+ ...|.|+|.. . .+...... ...|+.......+...|+|.+++.+|+
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~ 80 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS 80 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence 489999999987653 4589999972 1 11111111 112232222234567999999999999
Q ss_pred CeEEEEEEEcCCCceeEEEEEEEEC
Q psy574 263 PLIILCLGVNAAGSDLARASLTVSG 287 (977)
Q Consensus 263 G~Y~~C~a~n~~g~~~~~~~l~V~~ 287 (977)
|.|. |.+.+..+.....+.|.|.+
T Consensus 81 G~Y~-C~v~~~~~~~~~~v~L~V~~ 104 (106)
T cd05714 81 GRYR-CEVIDGIEDEQDTVELEVRG 104 (106)
T ss_pred EEEE-EEEEcCCCceEEEEEEEEEE
Confidence 9999 99999877778888888865
No 289
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=97.94 E-value=3e-05 Score=68.36 Aligned_cols=74 Identities=23% Similarity=0.389 Sum_probs=54.6
Q ss_pred eCCCeEEEEEEecc-cCceEEEEEECCeeCC--------------C----CceEEec-cceEEEccCccCCCeEEEEEEE
Q psy574 112 SASSIIVFECSVGG-DAVLTVHWKRLGSAMP--------------E----DRMSVLP-SRSLQLSDVRLEDAGEYVCEAE 171 (977)
Q Consensus 112 ~~G~~v~l~C~v~g-~p~~~i~W~k~~~~l~--------------~----~~~~~~~-~~~L~I~~v~~~D~G~Y~C~a~ 171 (977)
..|++|+|.|.... .....+.|+|....+. . +|+.+.. +.+|+|.+++.+|+|.|.|.+.
T Consensus 2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~ 81 (97)
T cd05775 2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEIN 81 (97)
T ss_pred ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEE
Confidence 47999999998854 5566899998643211 0 1233323 4789999999999999999999
Q ss_pred eCCee-EEEEEEEEE
Q psy574 172 NAVGK-ISASATLTV 185 (977)
Q Consensus 172 n~~g~-~~~~~~L~V 185 (977)
+..|. ....+.|.|
T Consensus 82 ~~~~~~~~~~f~L~v 96 (97)
T cd05775 82 TKNGVTITKEFTLHI 96 (97)
T ss_pred cCCCCeEEEEEEEEe
Confidence 87665 567777776
No 290
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=97.93 E-value=8.5e-05 Score=66.69 Aligned_cols=77 Identities=22% Similarity=0.346 Sum_probs=52.7
Q ss_pred CCcEEEEEECCC----------CCCCCeEEEEeC-----CE-----Ee----------ecCCCceEEEec------CcEE
Q psy574 20 GDTALLECGPPR----------GHPEPTLVWKKN-----GH-----PI----------DFENSKRLRLVD------GTNL 63 (977)
Q Consensus 20 G~~v~L~C~~~~----------g~P~~~v~W~k~-----g~-----~l----------~~~~~~r~~~~~------~g~L 63 (977)
|++++|.|.... ....+.|.|+|- |+ .+ ..+..+|..+.. +.+|
T Consensus 2 ~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~~~~g~asL 81 (117)
T cd05901 2 SGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHPEDQGDASL 81 (117)
T ss_pred CCCEEEeeEEEecCCCCCcccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccCCcCCceEE
Confidence 789999998721 112358999873 11 11 123456777642 4689
Q ss_pred EEcCCCCCCCeEEEEEEEecCceeeeEeEEEEEE
Q psy574 64 AIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVL 97 (977)
Q Consensus 64 ~I~~v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V~ 97 (977)
.|.+++.+|+|.|+|.+.+.... ....+.|.|.
T Consensus 82 ~i~~v~~sD~G~Y~C~V~~g~~~-~~~~v~L~V~ 114 (117)
T cd05901 82 TIVKLRASDAGVYRCEVMHGIED-TQDTVSLDVS 114 (117)
T ss_pred EEcccccccCEEEEEEEEECCcc-cEEEEEEEEE
Confidence 99999999999999999887543 3455667665
No 291
>KOG1480|consensus
Probab=97.92 E-value=3.1e-06 Score=95.50 Aligned_cols=180 Identities=26% Similarity=0.422 Sum_probs=120.8
Q ss_pred ccccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEec--------CcEEEEcCCCCCCCe-
Q psy574 4 LREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD--------GTNLAIQDSRKTDDG- 74 (977)
Q Consensus 4 l~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~--------~g~L~I~~v~~~D~G- 74 (977)
+-+.|..+|.+..+..|.++.|.|.+ +|.+++..+-++.-+.......+.-.+ .-.+.|...+.++.|
T Consensus 23 ~l~~~~~~p~~~yii~~~p~~l~c~a---~~a~~i~~kc~~~wv~~~~~~~~~~~d~tsg~~~~~~si~Isr~~v~~~~~ 99 (909)
T KOG1480|consen 23 DLPHFTTEPKSAYIIKNKPLRLQCKA---NPATQIRFKCNSEWVHQSRHEKLEGTDETSGLGVREVSIDISRQQVETSGG 99 (909)
T ss_pred CcceeeecCCccceecCCCccceecC---CcccccccccChhhhcCccceeeeccCcccceeEEeeeeeeehhhhhcccC
Confidence 34778999999999999999999976 566666655555444221111111111 112344444433332
Q ss_pred --EEE--EEEEecCceeeeEeEEEEEE-cCCeEEeCCCceEEeCCCeEEEEEEe-cccCceEEEEEECCeeCCCC-ceEE
Q psy574 75 --RYQ--CVVKNVAGTRESTDAVLRVL-VKPYIIRGPKDTTVSASSIIVFECSV-GGDAVLTVHWKRLGSAMPED-RMSV 147 (977)
Q Consensus 75 --~Y~--C~a~n~~g~~~s~~~~l~V~-~~P~~~~~p~~~~v~~G~~v~l~C~v-~g~p~~~i~W~k~~~~l~~~-~~~~ 147 (977)
.|. |+|....|...++.+.+.+. ..-.|...|..+.|..+..+.+.|.. .+.|...+.|+|++..+... +...
T Consensus 100 ~~d~~cQc~a~~~~g~~~s~~a~vr~ay~rk~f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd~n~~~ 179 (909)
T KOG1480|consen 100 PEDYWCQCVAWSDDGTVKSRKATVRIAYLRKHFEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPDANVIR 179 (909)
T ss_pred ccceeeeeeeecCCCcchhhhHHHHHHHHHHhhccChhhheecccccccccccCcccchhhhhhccccCCCCCccccchh
Confidence 555 45655556555544433332 23456777888899999999999997 78899999999999887653 3334
Q ss_pred eccceEEEccCccCCCeEEEEEEEeCCee-EEEEEEEEEe
Q psy574 148 LPSRSLQLSDVRLEDAGEYVCEAENAVGK-ISASATLTVQ 186 (977)
Q Consensus 148 ~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~-~~~~~~L~V~ 186 (977)
..++.|.|..+...|.|+|+|+|.|.++. ....+.+.|.
T Consensus 180 ~~d~~li~~~arlsd~~nytc~a~ni~~~r~~~~~~v~vy 219 (909)
T KOG1480|consen 180 ASDHNLIISQARLSDSGNYTCEATNIVAKRKSDPATVQVY 219 (909)
T ss_pred hhcCCccccchhhhhcccceeeeehhhccccccceEEEEE
Confidence 47789999999999999999999998775 3334444443
No 292
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.89 E-value=5e-05 Score=68.39 Aligned_cols=72 Identities=22% Similarity=0.369 Sum_probs=52.3
Q ss_pred EEeCCCceEEeCCCeEEEEEEecccC-ceEEEEEECCe--e---C----------CCCceEEe---ccceEEEccCccCC
Q psy574 102 IIRGPKDTTVSASSIIVFECSVGGDA-VLTVHWKRLGS--A---M----------PEDRMSVL---PSRSLQLSDVRLED 162 (977)
Q Consensus 102 ~~~~p~~~~v~~G~~v~l~C~v~g~p-~~~i~W~k~~~--~---l----------~~~~~~~~---~~~~L~I~~v~~~D 162 (977)
+...|....+.+|++++|.|.+.+.. ...+.|+|... . + ...++... ....|.|.+++.+|
T Consensus 3 v~Q~p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~D 82 (106)
T cd04980 3 LTQSPATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPED 82 (106)
T ss_pred EEECCCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHH
Confidence 44567778899999999999997654 56799998631 1 0 01234332 22469999999999
Q ss_pred CeEEEEEEEeC
Q psy574 163 AGEYVCEAENA 173 (977)
Q Consensus 163 ~G~Y~C~a~n~ 173 (977)
+|.|.|.+.+.
T Consensus 83 sg~Y~Ca~~~~ 93 (106)
T cd04980 83 AAVYYCQQYGT 93 (106)
T ss_pred CEEEEEEEeCC
Confidence 99999998654
No 293
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=97.86 E-value=0.00013 Score=65.83 Aligned_cols=85 Identities=13% Similarity=0.241 Sum_probs=59.3
Q ss_pred eCCeEEEEEEEecCC------------CCeEEEEEcCe---eeee-c-------CCCccccEEEEEc--cCCceEEEEee
Q psy574 202 VGRDAVFLCGIEGSP------------PPSTFWMLEGN---RSLI-Y-------PGDRVDNIQAEIT--SDGMNLLKIQN 256 (977)
Q Consensus 202 ~G~~v~L~C~~~g~p------------~~~i~W~~~g~---~~~~-~-------~~~~~~~~~~~~~--~~g~s~L~I~~ 256 (977)
.|++++|.|...... .+.|.|+|... +..+ . .....+|+++... ..+...|+|.+
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n 80 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE 80 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence 489999999986532 35899998521 1111 1 1122346666541 23567999999
Q ss_pred cccCCCCeEEEEEEEcCCCceeEEEEEEEEC
Q psy574 257 VSRTAAPLIILCLGVNAAGSDLARASLTVSG 287 (977)
Q Consensus 257 v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~ 287 (977)
++.+|+|.|. |.+.+..........|.|+.
T Consensus 81 l~~sDsG~Y~-C~V~~g~~~~~~~v~l~v~g 110 (112)
T cd05900 81 LRSNDSGTYR-CEVMHGIEDNYDTVEVQVKG 110 (112)
T ss_pred cccccCEEEE-EEEecCCCCceeEEEEEEEe
Confidence 9999999999 99998777777777777764
No 294
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=97.86 E-value=7.1e-05 Score=63.69 Aligned_cols=61 Identities=18% Similarity=0.382 Sum_probs=43.0
Q ss_pred EEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecC-c------EEEEcCCCCCCCeEEEEEEEecC
Q psy574 23 ALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG-T------NLAIQDSRKTDDGRYQCVVKNVA 84 (977)
Q Consensus 23 v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~-g------~L~I~~v~~~D~G~Y~C~a~n~~ 84 (977)
++|.|.+..++|.+.|.|+|||+.+.... .......+ + .|.|.....+|...|+|+|.+..
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~-~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~ 69 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQELEGAP-TSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHES 69 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEECCCcc-eeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcc
Confidence 68999997778999999999999884322 12222222 2 35554555666779999999875
No 295
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=97.84 E-value=0.00017 Score=65.43 Aligned_cols=83 Identities=18% Similarity=0.151 Sum_probs=55.4
Q ss_pred cCCCcEEeeCCeEEEEEEEecCC----CCeEEEEEc---------------CeeeeecCCCccccEEEEEcc-CCceEEE
Q psy574 194 RPSDLRLEVGRDAVFLCGIEGSP----PPSTFWMLE---------------GNRSLIYPGDRVDNIQAEITS-DGMNLLK 253 (977)
Q Consensus 194 ~p~~~~v~~G~~v~L~C~~~g~p----~~~i~W~~~---------------g~~~~~~~~~~~~~~~~~~~~-~g~s~L~ 253 (977)
.+..+.+..|++++|.|...... ...|.|.+. |...........+|+...... .+..+|.
T Consensus 4 ~~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~ 83 (116)
T cd05879 4 TDREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIV 83 (116)
T ss_pred ccceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEE
Confidence 35667889999999999996642 347999442 221110011223455544322 2446999
Q ss_pred EeecccCCCCeEEEEEEEcCCCce
Q psy574 254 IQNVSRTAAPLIILCLGVNAAGSD 277 (977)
Q Consensus 254 I~~v~~~d~G~Y~~C~a~n~~g~~ 277 (977)
|.+++.+|.|.|+ |.+.|.-+..
T Consensus 84 I~nv~~sD~G~Y~-C~v~n~p~~~ 106 (116)
T cd05879 84 IHNLDYTDNGTFT-CDVKNPPDIV 106 (116)
T ss_pred EccCCcccCEEEE-EEEEcCCCcC
Confidence 9999999999999 9999876643
No 296
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.82 E-value=6.3e-05 Score=67.65 Aligned_cols=66 Identities=24% Similarity=0.467 Sum_probs=49.7
Q ss_pred EEeCCCeEEEEEEeccc-CceEEEEEECCee-----C-------------CCCceEEe-----ccceEEEccCccCCCeE
Q psy574 110 TVSASSIIVFECSVGGD-AVLTVHWKRLGSA-----M-------------PEDRMSVL-----PSRSLQLSDVRLEDAGE 165 (977)
Q Consensus 110 ~v~~G~~v~l~C~v~g~-p~~~i~W~k~~~~-----l-------------~~~~~~~~-----~~~~L~I~~v~~~D~G~ 165 (977)
.+.+|++++|.|.+.+. +...+.|+|.... + ..+|+.+. .+.+|.|.+++.+|+|.
T Consensus 2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~ 81 (105)
T cd00099 2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAV 81 (105)
T ss_pred eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEE
Confidence 57899999999999765 6778999996431 0 12333333 23489999999999999
Q ss_pred EEEEEEeCCe
Q psy574 166 YVCEAENAVG 175 (977)
Q Consensus 166 Y~C~a~n~~g 175 (977)
|.|.+.+..+
T Consensus 82 Y~C~v~~~~~ 91 (105)
T cd00099 82 YYCAVSLSGG 91 (105)
T ss_pred EEEEEecCCC
Confidence 9999987654
No 297
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=97.81 E-value=0.0001 Score=67.92 Aligned_cols=73 Identities=27% Similarity=0.399 Sum_probs=50.9
Q ss_pred cccceEEeCCCcEEEEEECCCCC-----CCCeEEEEeCCE------Eee---------cCCCceEEEec-----CcEEEE
Q psy574 11 QPKSQRVAAGDTALLECGPPRGH-----PEPTLVWKKNGH------PID---------FENSKRLRLVD-----GTNLAI 65 (977)
Q Consensus 11 ~p~~~~v~~G~~v~L~C~~~~g~-----P~~~v~W~k~g~------~l~---------~~~~~r~~~~~-----~g~L~I 65 (977)
.|..+.+.+|++|+|.|...... ....+.|+|... .+. ....+|+.+.. +.+|.|
T Consensus 5 ~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I 84 (119)
T cd05712 5 MPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLI 84 (119)
T ss_pred CCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEE
Confidence 57789999999999999762121 135689998421 110 11235766631 246999
Q ss_pred cCCCCCCCeEEEEEEEec
Q psy574 66 QDSRKTDDGRYQCVVKNV 83 (977)
Q Consensus 66 ~~v~~~D~G~Y~C~a~n~ 83 (977)
.+++.+|+|.|.|.+...
T Consensus 85 ~~l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 85 SDAQPEDSGKYFFRVELG 102 (119)
T ss_pred ccCChhhCeEEEEEEEcC
Confidence 999999999999998754
No 298
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=97.80 E-value=7.5e-05 Score=68.55 Aligned_cols=69 Identities=20% Similarity=0.421 Sum_probs=51.8
Q ss_pred eCCCceEEeCCCeEEEEEEecc--cCceEEEEEECC--eeC------------------CCCceEEec-----cceEEEc
Q psy574 104 RGPKDTTVSASSIIVFECSVGG--DAVLTVHWKRLG--SAM------------------PEDRMSVLP-----SRSLQLS 156 (977)
Q Consensus 104 ~~p~~~~v~~G~~v~l~C~v~g--~p~~~i~W~k~~--~~l------------------~~~~~~~~~-----~~~L~I~ 156 (977)
..|....+.+|++++|.|.+.+ .+...+.|+|.. ... ..+|+.+.. ...|+|.
T Consensus 3 Q~p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~ 82 (116)
T cd04982 3 QPQLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQ 82 (116)
T ss_pred CcCCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEE
Confidence 3466778899999999999976 677889999962 111 123444431 2479999
Q ss_pred cCccCCCeEEEEEEEe
Q psy574 157 DVRLEDAGEYVCEAEN 172 (977)
Q Consensus 157 ~v~~~D~G~Y~C~a~n 172 (977)
+++.+|+|.|.|.+..
T Consensus 83 ~~~~~Dsg~Y~C~~~~ 98 (116)
T cd04982 83 NLEKEDSATYYCAYWE 98 (116)
T ss_pred ECCHHHCEEEEEEEec
Confidence 9999999999999864
No 299
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=97.80 E-value=0.00011 Score=62.52 Aligned_cols=62 Identities=23% Similarity=0.318 Sum_probs=42.7
Q ss_pred EEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEe-cCc------EEEEcCCCCCCCeEEEEEEEecCce
Q psy574 23 ALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV-DGT------NLAIQDSRKTDDGRYQCVVKNVAGT 86 (977)
Q Consensus 23 v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~-~~g------~L~I~~v~~~D~G~Y~C~a~n~~g~ 86 (977)
++|.|.+..+.|.+.|.|+|||+.+.... ..... .++ .|.+.....+|.+.|+|+|.+....
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~--~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~ 70 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFKGDKELKGVK--LKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALK 70 (82)
T ss_pred EEEEEEecCcCcCCeEEEEECCEEccCce--eeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcC
Confidence 68999997778999999999999984221 11111 222 3555444455667999999987643
No 300
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=97.79 E-value=0.00011 Score=66.98 Aligned_cols=81 Identities=22% Similarity=0.419 Sum_probs=58.3
Q ss_pred CCCceEEeCCCeEEEEEEec-ccCceEEEEEECCe-----eCC---------------CCceEEec-----cceEEEccC
Q psy574 105 GPKDTTVSASSIIVFECSVG-GDAVLTVHWKRLGS-----AMP---------------EDRMSVLP-----SRSLQLSDV 158 (977)
Q Consensus 105 ~p~~~~v~~G~~v~l~C~v~-g~p~~~i~W~k~~~-----~l~---------------~~~~~~~~-----~~~L~I~~v 158 (977)
.|....+.+|+++.|.|... ......+.|++... .+. .++..+.. +.+|.|.++
T Consensus 7 ~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l 86 (114)
T PF07686_consen 7 PPSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNL 86 (114)
T ss_dssp EESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSE
T ss_pred eCCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCC
Confidence 35667889999999999998 55677899999532 111 12333322 246999999
Q ss_pred ccCCCeEEEEEEEeC-CeeEEEEEEEEE
Q psy574 159 RLEDAGEYVCEAENA-VGKISASATLTV 185 (977)
Q Consensus 159 ~~~D~G~Y~C~a~n~-~g~~~~~~~L~V 185 (977)
+.+|+|.|.|.+... .......+.|.|
T Consensus 87 ~~~DsG~Y~C~v~~~~~~~~~~~~~L~V 114 (114)
T PF07686_consen 87 QPSDSGTYFCQVSTSNEQSFGNGTKLTV 114 (114)
T ss_dssp SGGGEEEEEEEEEESSEEEEEEEEEEEE
T ss_pred CcCcCEEEEEEEEECCCCEECCcEEEEC
Confidence 999999999999886 334556666665
No 301
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=97.79 E-value=0.0001 Score=67.54 Aligned_cols=73 Identities=18% Similarity=0.264 Sum_probs=50.7
Q ss_pred ecccceEEeCCCcEEEEEECCCCC-CCCeEEEEeC--C-EE--e------------ecCCCceEEEecC-----cEEEEc
Q psy574 10 VQPKSQRVAAGDTALLECGPPRGH-PEPTLVWKKN--G-HP--I------------DFENSKRLRLVDG-----TNLAIQ 66 (977)
Q Consensus 10 ~~p~~~~v~~G~~v~L~C~~~~g~-P~~~v~W~k~--g-~~--l------------~~~~~~r~~~~~~-----g~L~I~ 66 (977)
++|....+.+|++|+|.|...... -...+.|||. | .+ | .....+|+....+ ..|.|.
T Consensus 2 ~~~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~ 81 (117)
T cd04981 2 VESGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLN 81 (117)
T ss_pred ccCCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEEC
Confidence 568889999999999999872221 2456999982 2 11 1 0111346665422 259999
Q ss_pred CCCCCCCeEEEEEEEe
Q psy574 67 DSRKTDDGRYQCVVKN 82 (977)
Q Consensus 67 ~v~~~D~G~Y~C~a~n 82 (977)
+++.+|+|.|.|.+..
T Consensus 82 ~~~~~Dsa~YyCa~~~ 97 (117)
T cd04981 82 SLTPEDTAVYYCARGL 97 (117)
T ss_pred CCCHHHCEEEEEEEEc
Confidence 9999999999998864
No 302
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=97.77 E-value=0.00022 Score=62.69 Aligned_cols=71 Identities=28% Similarity=0.532 Sum_probs=51.5
Q ss_pred eEEEEEEecc-cC---ceEEEEEECCe--e--C-----------C---CCceEEe----ccceEEEccCccCCCeEEEEE
Q psy574 116 IIVFECSVGG-DA---VLTVHWKRLGS--A--M-----------P---EDRMSVL----PSRSLQLSDVRLEDAGEYVCE 169 (977)
Q Consensus 116 ~v~l~C~v~g-~p---~~~i~W~k~~~--~--l-----------~---~~~~~~~----~~~~L~I~~v~~~D~G~Y~C~ 169 (977)
+++|.|.... .| ..+|.|.|... . + . .+|..+. .+.+|.|.+++.+|+|.|+|.
T Consensus 2 ~v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~~~~~daSi~i~nl~~~D~G~Y~C~ 81 (99)
T cd05886 2 DVVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKNPSFEDGTISLSRLELEDEGVYICE 81 (99)
T ss_pred cEEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcCCCCCcceEEEcCCccccCEEEEEE
Confidence 6889999853 22 23699988521 1 1 0 1344433 357999999999999999999
Q ss_pred EEe-CCeeEEEEEEEEEe
Q psy574 170 AEN-AVGKISASATLTVQ 186 (977)
Q Consensus 170 a~n-~~g~~~~~~~L~V~ 186 (977)
+.+ ..|..++.+.|+|.
T Consensus 82 v~t~P~g~~~~~~~L~V~ 99 (99)
T cd05886 82 FATFPTGNRESQLNLTVY 99 (99)
T ss_pred EEeCCCCCeEEEEEEEEC
Confidence 998 67888888999874
No 303
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=97.74 E-value=0.00022 Score=63.34 Aligned_cols=70 Identities=26% Similarity=0.407 Sum_probs=50.9
Q ss_pred eEEEEEEecccC---ceEEEEEECCee-----C----C----------CCceEEe-----ccceEEEccCccCCCeEEEE
Q psy574 116 IIVFECSVGGDA---VLTVHWKRLGSA-----M----P----------EDRMSVL-----PSRSLQLSDVRLEDAGEYVC 168 (977)
Q Consensus 116 ~v~l~C~v~g~p---~~~i~W~k~~~~-----l----~----------~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C 168 (977)
+++|.|...... ...|.|+|.... + . .+|..+. .+.+|.|.+++.+|+|.|.|
T Consensus 2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C 81 (100)
T cd05888 2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYKC 81 (100)
T ss_pred CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEEE
Confidence 689999985333 458999995211 1 0 0344443 25689999999999999999
Q ss_pred EEEe-CCeeEEEEEEEEE
Q psy574 169 EAEN-AVGKISASATLTV 185 (977)
Q Consensus 169 ~a~n-~~g~~~~~~~L~V 185 (977)
.+.+ ..|..++.+.|+|
T Consensus 82 ~v~~~p~g~~~~~~~L~V 99 (100)
T cd05888 82 RVITFPAGNFEAELVLTV 99 (100)
T ss_pred EEEeCCCCCeeeEEEEEe
Confidence 9987 6677788888887
No 304
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=97.73 E-value=0.00025 Score=64.09 Aligned_cols=85 Identities=14% Similarity=0.262 Sum_probs=59.1
Q ss_pred eCCeEEEEEEEecCC----------CCeEEEEEcC--eee--eec-------CCCccccEEEEE--ccCCceEEEEeecc
Q psy574 202 VGRDAVFLCGIEGSP----------PPSTFWMLEG--NRS--LIY-------PGDRVDNIQAEI--TSDGMNLLKIQNVS 258 (977)
Q Consensus 202 ~G~~v~L~C~~~g~p----------~~~i~W~~~g--~~~--~~~-------~~~~~~~~~~~~--~~~g~s~L~I~~v~ 258 (977)
.|++++|.|.....+ ...|.|+|.. ... ... .....+|+.+.. ...+...|+|.+++
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~ 80 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR 80 (110)
T ss_pred CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence 488999999997543 3579999962 211 111 111234665542 22355789999999
Q ss_pred cCCCCeEEEEEEEcCCCceeEEEEEEEEC
Q psy574 259 RTAAPLIILCLGVNAAGSDLARASLTVSG 287 (977)
Q Consensus 259 ~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~ 287 (977)
.+|+|.|. |.+..........+.|.|.+
T Consensus 81 ~sD~G~Y~-C~v~~~~~~~~~~v~l~V~g 108 (110)
T cd05878 81 SSDSGVYR-CEVMHGIEDEQDTVPLEVTG 108 (110)
T ss_pred hhhCEEEE-EEEEeCCCcceEEEEEEEEE
Confidence 99999999 99998777777788887764
No 305
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=97.72 E-value=0.00036 Score=58.18 Aligned_cols=77 Identities=13% Similarity=0.269 Sum_probs=57.7
Q ss_pred ceEEeCCCeEEEEEEeccc--CceEEEEEECCeeCCCCceEEeccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy574 108 DTTVSASSIIVFECSVGGD--AVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTV 185 (977)
Q Consensus 108 ~~~v~~G~~v~l~C~v~g~--p~~~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V 185 (977)
+..+..|++++|+|..... |.+.|+|...+...-. .......+|.+.++...|+|.++|.+....-.....+.+.|
T Consensus 8 ~~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~--~~~~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~~V~V 85 (88)
T cd07694 8 SDHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQ--ILNQDKKTLNLVQLGPNDSGTWDCIVSVNSSEKTLKLDIKV 85 (88)
T ss_pred CCeeecCCcEEEEEecCCCCCCCccEEEeCCCCccce--eccCCccEEEeceeCcccCCEEEEEEEECceEEEEEeeEEE
Confidence 4468899999999999443 4459999987765331 11236678999999999999999999876555566666666
Q ss_pred e
Q psy574 186 Q 186 (977)
Q Consensus 186 ~ 186 (977)
.
T Consensus 86 l 86 (88)
T cd07694 86 L 86 (88)
T ss_pred E
Confidence 4
No 306
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=97.72 E-value=0.00012 Score=64.03 Aligned_cols=71 Identities=18% Similarity=0.267 Sum_probs=50.8
Q ss_pred CeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCce----EEeccceEEEccCccCCCeEEEEEEEe
Q psy574 100 PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRM----SVLPSRSLQLSDVRLEDAGEYVCEAEN 172 (977)
Q Consensus 100 P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~----~~~~~~~L~I~~v~~~D~G~Y~C~a~n 172 (977)
|.+...| ...|.+|++|+|.|.... +...+.|+|++........ .......+.|..++.+|+|.|+|....
T Consensus 2 P~l~a~p-~~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~~ 76 (94)
T cd05711 2 PFLSAHP-SPVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGSY 76 (94)
T ss_pred CEEEecC-CCccCCCCeEEEEEecCC-CCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEEC
Confidence 5555555 457789999999998754 4567999999876432110 011234789999999999999999753
No 307
>KOG0613|consensus
Probab=97.72 E-value=0.00018 Score=87.21 Aligned_cols=447 Identities=13% Similarity=0.015 Sum_probs=240.6
Q ss_pred CCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceEEeccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEE
Q psy574 105 GPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLT 184 (977)
Q Consensus 105 ~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~ 184 (977)
.+.......++...|.|.+.+...+.+.|+.+....... .....++.|.+-...+.+.|+|...+..+.....+.-.
T Consensus 235 ~~~~s~t~e~s~~~i~~~l~~~~G~~~~~~~~~l~e~~~---~~~~~t~~i~~~~~~~~~s~t~~~~~~~~q~~~~v~~~ 311 (1205)
T KOG0613|consen 235 APSMSVTLEASDRKIQLTLRAPRGPYSAHILGYLIEQRK---HKGGNTKTIQNDGPEPELSWTVADKRQGCQDRFKVTEE 311 (1205)
T ss_pred ccccccccchhheeeeEEeecCCCchHHHHhcchhhhcc---cCCCccccccccCCccccceeeecccCCcccceeeeEE
Confidence 344556677888889999888888888887765433221 22445677888888889999999888776654444333
Q ss_pred Eee----------------CCeEE---ecCCCcEEeeCCeEEEEEEEecCCCCe-EEEEEcCeeeeecCCCccccEEEEE
Q psy574 185 VQM----------------APIVR---ERPSDLRLEVGRDAVFLCGIEGSPPPS-TFWMLEGNRSLIYPGDRVDNIQAEI 244 (977)
Q Consensus 185 V~~----------------~p~~~---~~p~~~~v~~G~~v~L~C~~~g~p~~~-i~W~~~g~~~~~~~~~~~~~~~~~~ 244 (977)
+.. ++... .......+..+..+++.|...+...+. +.|++.+.......+. .+....
T Consensus 312 ~~i~~~~~~p~~~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m~~~~~~~~~p~~~~~~~~~~~~~~~~~~---~~~~~~ 388 (1205)
T KOG0613|consen 312 APIGKGKPGPESLQAAAARPPEVPVGLVRNLSVTARDNTLVEMPTALSGTQKPDEAQGYHGEEVSSESLGA---LPCPVG 388 (1205)
T ss_pred eeccccccCchhhhhhccCCccccccccccceeccccCcceeecccccCCcCCchheeecccccccccccc---cccccc
Confidence 331 11111 111223455677899999999888775 8999876543221111 111111
Q ss_pred ccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEECCCCCCCCeEEeCCCceeecCC--CcEEEEEEEcc--C
Q psy574 245 TSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLR--SEARLRCQVRG--E 320 (977)
Q Consensus 245 ~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~~~~~~pp~i~~~p~~~~v~~g--~~~~L~C~~~~--~ 320 (977)
....+.+.|..+...+.+.|. |.|.|..|.........|......-.+....-....+...+ +.+.+.|...+ .
T Consensus 389 -~~ts~~~~~~~~~~~e~~~~~-~~a~n~~g~~~~~~~~~vs~~~~gt~~~~~kk~~~~t~~L~~~~~i~~~~~~~s~~~ 466 (1205)
T KOG0613|consen 389 -TVTSHTYTIKDAGPGEGYFTR-VPAVNKGGTEQTIAESTVSEEMPGTQPPKFKKDVSTTDLLTVKDEITVRTPDSSTSM 466 (1205)
T ss_pred -cccCcchhhhhcCcccccccc-cceeccCCcccccchhhcccccCCCCCccccccccccccccCCcccccccCCCCccc
Confidence 122358899999999999999 99999999887776666665332223332333333333333 77888888888 2
Q ss_pred c--eEEEEECCEEcCCC-CcEEEecCceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEECCCCCCCcccCCCCCCCC
Q psy574 321 G--SVQWWRGEREVGSG-PRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTY 397 (977)
Q Consensus 321 p--~i~W~~~g~~l~~~-~~~~~~~~~sl~I~~v~~~d~G~Y~C~a~n~~G~~~~s~~l~v~~~~~~~~~~~~~~~~~~~ 397 (977)
+ .++|.+++...... .......-.+|.+.-....+.+.|.-......|....+-...... ..
T Consensus 467 ~~~~~tt~~~~~~~s~~s~~l~r~~~tslLlk~~~~~~~A~~~~a~~~~~~k~~~~~~~~l~~---------------~~ 531 (1205)
T KOG0613|consen 467 PMTTVTTIKDGLPLSDRSVTLTRDVLTSLLLKVASLSDGAQYTRALRTLQGKPVPSLDRKLPA---------------AK 531 (1205)
T ss_pred cceeEeeccCCcccccccccccccchhhheeeccCCCccchhhhhhhccCCCCCCcccccccc---------------cc
Confidence 3 34455554433222 111112223466666666777777655444444322111111100 01
Q ss_pred CCCCCCCeEEeeCCCceEEEEEcCCCCCCcccceEEEEEeecCCCCCCCCCCCCcccEEEeceecCcCeEEEEccCCCCe
Q psy574 398 PGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVGLT 477 (977)
Q Consensus 398 p~~P~~~~v~~~~~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~i~~L~p~t~ 477 (977)
..+|..+.--..-.....+.|.+-.......-..|.+... . .+.|........ +..++.+..|+..
T Consensus 532 s~a~~~~~~~~~~~g~p~l~~~~~~~E~~~vs~~~~~a~~--q-----------lg~~~~~~~r~g-tt~t~~~~~p~~~ 597 (1205)
T KOG0613|consen 532 SSAPKPIHTQENQPGTPTLEWEPKPAEASKVSLHYASATR--Q-----------LGVWRVPESRPG-TTETIGSILPGHE 597 (1205)
T ss_pred cCCcccccccccCCCCcccccCCCcccccccchhhhhhhh--h-----------ccCCcccccCCC-ccccccccccccc
Confidence 1111111111111234566676543322222233333322 1 113433332222 7778899999999
Q ss_pred EEEEEEEEcCCCCCCCCCCCceEEeeccccccccccCCcceeecCCCCCCCcchHHHHhhcccccCCceEEEEEeeEeCC
Q psy574 478 YTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPMTS 557 (977)
Q Consensus 478 Y~~~V~a~n~~G~s~~S~~s~~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~g~~~~~~~~~l~~~~~~~~~~l~~~~~~~ 557 (977)
|.+.+.+.+..|.+.++.-+. +.+...+..... .| ..=.......
T Consensus 598 ~~~t~~~k~~~gE~~ps~~~~--t~k~~D~~q~~~---------~~------------------------~~~~~~ks~~ 642 (1205)
T KOG0613|consen 598 YHVTIKAKNELGESRPSSKST--TLKWQDPSQLKR---------RP------------------------VSEPSYKSPD 642 (1205)
T ss_pred ceeehhhhhcccccCCCCCCc--cccccccccccc---------cc------------------------cCCccccccc
Confidence 999999999999988774222 111111111111 00 0000222344
Q ss_pred CeEEEEEEec---CCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeeccee
Q psy574 558 TSVKLTWEIL---NTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVD 625 (977)
Q Consensus 558 tsv~lsW~~p---~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~ 625 (977)
.+..++|... .......|....-.......|....-. .......+....+.+.|.+.+.+.+..+.
T Consensus 643 ~~~k~s~l~~l~k~~~~a~~~~~~~~~vd~~~K~kv~~~~--~e~d~~i~~~~~t~si~~p~k~~e~~~~~ 711 (1205)
T KOG0613|consen 643 SSQKPSKLVGLSKMDLPANLESQVKPTVVSSPKKKVKKKK--QEKDLEILAKKGTTSIVEPEKPPESEAAT 711 (1205)
T ss_pred cccchhcccchhhccccccceeeeeccccCCccccccccc--cccchhhhccCCCCcccccccCCccccCC
Confidence 5667777777 222333344444333333444332221 23345666677777778877777765543
No 308
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=97.70 E-value=0.00028 Score=61.49 Aligned_cols=72 Identities=22% Similarity=0.506 Sum_probs=52.8
Q ss_pred CeEEEEEEecc-cCceEEEEEECCe----eC--------------CCCceEEe----ccceEEEccCccCCCeEEEEEEE
Q psy574 115 SIIVFECSVGG-DAVLTVHWKRLGS----AM--------------PEDRMSVL----PSRSLQLSDVRLEDAGEYVCEAE 171 (977)
Q Consensus 115 ~~v~l~C~v~g-~p~~~i~W~k~~~----~l--------------~~~~~~~~----~~~~L~I~~v~~~D~G~Y~C~a~ 171 (977)
++++|.|.... ....+|.|.|... .+ -.+|..+. .+.+|.|.+++.+|+|.|+|.+.
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~ 80 (96)
T cd05887 1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAV 80 (96)
T ss_pred CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEE
Confidence 36899999853 3456899988532 11 01243332 46799999999999999999975
Q ss_pred -eCCeeEEEEEEEEEe
Q psy574 172 -NAVGKISASATLTVQ 186 (977)
Q Consensus 172 -n~~g~~~~~~~L~V~ 186 (977)
...|..++.+.|+|.
T Consensus 81 tfP~G~~~~~~~l~~~ 96 (96)
T cd05887 81 TFPLGNTQSSTTVTVL 96 (96)
T ss_pred eCCCCCeeEEEEEEEC
Confidence 678889999999873
No 309
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=97.69 E-value=0.00021 Score=63.04 Aligned_cols=73 Identities=29% Similarity=0.452 Sum_probs=51.6
Q ss_pred CCeEEEEEEecccC-ceEEEEEECCee----C----C----------CCceEEe----ccceEEEccCccCCCeEEEEEE
Q psy574 114 SSIIVFECSVGGDA-VLTVHWKRLGSA----M----P----------EDRMSVL----PSRSLQLSDVRLEDAGEYVCEA 170 (977)
Q Consensus 114 G~~v~l~C~v~g~p-~~~i~W~k~~~~----l----~----------~~~~~~~----~~~~L~I~~v~~~D~G~Y~C~a 170 (977)
|++++|.|...... ...|.|+|.... + . .+|.... .+.+|.|.+++.+|+|.|+|..
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~ 80 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF 80 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence 78999999874332 347999986321 0 0 1122221 3467999999999999999998
Q ss_pred E-eCCeeEEEEEEEEEe
Q psy574 171 E-NAVGKISASATLTVQ 186 (977)
Q Consensus 171 ~-n~~g~~~~~~~L~V~ 186 (977)
. ...|..+..+.|+|.
T Consensus 81 ~~~p~g~~~~~~~L~v~ 97 (97)
T cd05846 81 NTFPDGSKSGTMCLTVY 97 (97)
T ss_pred EeCCCCCeeeEEEEEEC
Confidence 7 466778888888873
No 310
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=97.69 E-value=0.00025 Score=59.40 Aligned_cols=70 Identities=17% Similarity=0.330 Sum_probs=50.6
Q ss_pred EEEEEEe-cccCceEEEEEECCeeCCCCceE--Ee-----ccceEEEccCccCCCeEEEEEEEeCCee-EEEEEEEEEe
Q psy574 117 IVFECSV-GGDAVLTVHWKRLGSAMPEDRMS--VL-----PSRSLQLSDVRLEDAGEYVCEAENAVGK-ISASATLTVQ 186 (977)
Q Consensus 117 v~l~C~v-~g~p~~~i~W~k~~~~l~~~~~~--~~-----~~~~L~I~~v~~~D~G~Y~C~a~n~~g~-~~~~~~L~V~ 186 (977)
++|.|.+ .+.|.+.|+|+|++.++...... .. ..++|.|..-..+|...|+|+|.|..-. ......|.|+
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~ 80 (82)
T cd05883 2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQ 80 (82)
T ss_pred EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEEE
Confidence 6899998 55799999999999998653221 11 2246888777777778899999986532 5666667665
No 311
>KOG3632|consensus
Probab=97.68 E-value=9.9e-05 Score=85.40 Aligned_cols=263 Identities=16% Similarity=0.161 Sum_probs=157.1
Q ss_pred CCCCeEEeeCCCceEEEEEcCCC-CCCcccceEEEEEeecCCCCCCCCCCCCcccEEEeceecCcCeEEEEccCC-CCeE
Q psy574 401 PTKPTLVNQTANGLTLAWSRNNQ-IGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTV-GLTY 478 (977)
Q Consensus 401 P~~~~v~~~~~~sv~lsW~~p~~-~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~i~~L~p-~t~Y 478 (977)
|+...+......++.+.|.+|.. ....+...|.+..... ..........+...+..|.- ...|
T Consensus 581 pr~~~~vkqla~sv~vawepps~pP~~~~~~~~~~~v~~e---------------lrq~l~~gs~tka~~E~ld~~a~s~ 645 (1335)
T KOG3632|consen 581 PRTGAAVKQLAGSVHVAWEPPSSPPFTAPARMIGATVLME---------------LRQTLYAGSLTKAMQESLDNSAHSG 645 (1335)
T ss_pred ccchhhhhhhccceeeeccCCCCCCccccceeeeeecchh---------------hhhhcccccchHHHHhhccccCCce
Confidence 44555666677899999999776 3456666776643211 10100111112222233322 3357
Q ss_pred EEEEEEEcCCCCCCCCCCCceEEeeccccccccccCCcceeecCCCCCCCcchHHHHhhcccccCCceEEEEEeeEeCCC
Q psy574 479 TFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPMTST 558 (977)
Q Consensus 479 ~~~V~a~n~~G~s~~S~~s~~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~g~~~~~~~~~l~~~~~~~~~~l~~~~~~~t 558 (977)
.+.|.+....|.++... .+..-+.. .+.++.++++-.++.+
T Consensus 646 ~isvq~ltSrGsqd~lr---c~Llvgg~------------------------------------a~vvpsqlrv~n~tqt 686 (1335)
T KOG3632|consen 646 YISVQRLTSRGSQDQLR---CILLVGGA------------------------------------APVVPSQLRVWNATQT 686 (1335)
T ss_pred eeehhhhhccCCCCcce---eeEecccc------------------------------------ccccchhhhhhhhhch
Confidence 77888888778765432 11110111 1233467889999999
Q ss_pred eEEEEEEecCCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeecce---------eCCCC
Q psy574 559 SVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSV---------DGKPS 629 (977)
Q Consensus 559 sv~lsW~~p~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g---------~g~~s 629 (977)
+..++|-+-+..+. .+.|-.... ..........+++.+|.|++.|..+|-+.-..- .+...
T Consensus 687 Sa~itwvp~nsn~~---Hviyln~eE-------~~ps~a~~y~ytf~~lrpgt~y~a~vea~~p~q~pwdl~~v~~etr~ 756 (1335)
T KOG3632|consen 687 SAMITWVPFNSNFL---HVIYLNAEE-------PRPSVAEMYNYTFMRLRPGTDYWASVEAALPRQEPWDLRMVPMETRQ 756 (1335)
T ss_pred hhheeeeecCCCcc---eeeecCCcc-------CCCchhhhhHHHHhccCCCCccceecccccCcCCCcccccchhhhhc
Confidence 99999998643322 233322211 011124456789999999999999998876511 12234
Q ss_pred CceEEeccCCCCCCCCceeEEEEe-cCcEEEEEeeCCCCCC---CCe-eeeEEEEEEEecCCcceEEEEecCCcCeEEec
Q psy574 630 NLRAVRTLECEPSGVPQLTDPVLL-NATSVLLKWKPPPVGT---HNG-VIRTYQIIVGGGNNSALINMTVSASTPTLLLT 704 (977)
Q Consensus 630 ~~~~~~T~~~~P~~~P~~v~~~~~-~~~sv~v~W~~p~~~~---~ng-~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~l~ 704 (977)
..+.|+|..+-|.+||.+|+++.. +.+.+.++|.||-.+. .|| .+++|.|+... .+......-....+.+.+.
T Consensus 757 atv~f~tLpAGppappldV~vE~g~spg~l~vswrPptldsag~sngv~vtgYavyadg--qkv~Evafptagst~Vels 834 (1335)
T KOG3632|consen 757 ATVLFRTLPAGPPAPPLDVKVETGGSPGRLEVSWRPPTLDSAGCSNGVAVTGYAVYADG--QKVEEVAFPTAGSTKVELS 834 (1335)
T ss_pred cceeeecccCCCCCCchheeeecCCCCceeeeeccCceeccccccCceeeeeeeeeeCC--ceeeeeecccCCceEEEee
Confidence 678899999999999999998753 5578999999997443 455 58999997643 1111111112334455556
Q ss_pred CCCCC-ceEEEEEEEEcCCCcCCCCC
Q psy574 705 NLSAG-IRYSVSLAATNRAGTGPYSR 729 (977)
Q Consensus 705 ~L~p~-t~Y~~~V~A~~~~G~g~~S~ 729 (977)
.|+-+ ..=.|.||.....|++.-|-
T Consensus 835 Qlq~~l~~~~V~vRtms~~gesvdsi 860 (1335)
T KOG3632|consen 835 QLQDGLYHGAVGVRTMSVPGESVDSI 860 (1335)
T ss_pred eehhhheecceeEEecccCccccccc
Confidence 66553 33346777777777765553
No 312
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=97.68 E-value=0.00019 Score=62.76 Aligned_cols=74 Identities=14% Similarity=0.215 Sum_probs=51.9
Q ss_pred EEeCCCceEEeCCCeEEEEEEe-cccCceE--EEEEECCeeCCCCceEE------eccceEEEccCccCCCeEEEEEEEe
Q psy574 102 IIRGPKDTTVSASSIIVFECSV-GGDAVLT--VHWKRLGSAMPEDRMSV------LPSRSLQLSDVRLEDAGEYVCEAEN 172 (977)
Q Consensus 102 ~~~~p~~~~v~~G~~v~l~C~v-~g~p~~~--i~W~k~~~~l~~~~~~~------~~~~~L~I~~v~~~D~G~Y~C~a~n 172 (977)
+...+.+..+.+|+.++|.|.+ .+.|... |.|||++..+....+.. ....+|.+..-..+|.-.|+|+|.+
T Consensus 4 V~l~~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~~~r~D~g~~~sC~A~l 83 (100)
T cd05755 4 VELSPLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITITVDREDHGANFSCETEL 83 (100)
T ss_pred EEEecCCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEecchhhCCcEEEEEEEe
Confidence 3444555667899999999999 4577776 79999999986533221 1234577665555555589999998
Q ss_pred CCe
Q psy574 173 AVG 175 (977)
Q Consensus 173 ~~g 175 (977)
..+
T Consensus 84 ~l~ 86 (100)
T cd05755 84 DLR 86 (100)
T ss_pred ccC
Confidence 653
No 313
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=97.67 E-value=0.00015 Score=65.34 Aligned_cols=67 Identities=16% Similarity=0.311 Sum_probs=45.0
Q ss_pred EEeCCCcEEEEEECCCCCCCCeEEEEeC--C---EE----ee-c----------CCCceEEE--ecC---cEEEEcCCCC
Q psy574 16 RVAAGDTALLECGPPRGHPEPTLVWKKN--G---HP----ID-F----------ENSKRLRL--VDG---TNLAIQDSRK 70 (977)
Q Consensus 16 ~v~~G~~v~L~C~~~~g~P~~~v~W~k~--g---~~----l~-~----------~~~~r~~~--~~~---g~L~I~~v~~ 70 (977)
.+.+|++|+|.|.+........+.|+|. | +. +. . -...|+.+ ..+ ..|.|.+++.
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~ 81 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP 81 (107)
T ss_pred EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence 5889999999998832233457999983 2 11 10 0 01235544 222 2599999999
Q ss_pred CCCeEEEEEEEe
Q psy574 71 TDDGRYQCVVKN 82 (977)
Q Consensus 71 ~D~G~Y~C~a~n 82 (977)
+|+|.|.|...+
T Consensus 82 ~Dsg~YyCa~~~ 93 (107)
T cd07700 82 EDSGTYFCMTVG 93 (107)
T ss_pred HHCEEEEEeEcC
Confidence 999999999853
No 314
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=97.67 E-value=0.00022 Score=63.98 Aligned_cols=75 Identities=25% Similarity=0.378 Sum_probs=54.0
Q ss_pred CCCeEEEEEEecccC-------ceEEEEEECC-----eeC---------------CCCceEEe------ccceEEEccCc
Q psy574 113 ASSIIVFECSVGGDA-------VLTVHWKRLG-----SAM---------------PEDRMSVL------PSRSLQLSDVR 159 (977)
Q Consensus 113 ~G~~v~l~C~v~g~p-------~~~i~W~k~~-----~~l---------------~~~~~~~~------~~~~L~I~~v~ 159 (977)
.|++++|.|.+.-.| .+.|.|.|.. ..+ -.+|..+. .+.+|.|.+++
T Consensus 1 ~~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~ 80 (110)
T cd05902 1 LSSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLR 80 (110)
T ss_pred CCCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCC
Confidence 378899999974322 3689999852 111 01344443 24589999999
Q ss_pred cCCCeEEEEEEEeCCeeEEEEEEEEEee
Q psy574 160 LEDAGEYVCEAENAVGKISASATLTVQM 187 (977)
Q Consensus 160 ~~D~G~Y~C~a~n~~g~~~~~~~L~V~~ 187 (977)
.+|+|.|+|.+.......+..+.|.|.+
T Consensus 81 ~~D~G~Y~C~v~~g~~~~~~~v~L~V~g 108 (110)
T cd05902 81 YSDSGTYRCEVVLGINDEQDTVPLEVTG 108 (110)
T ss_pred HHHCEEEEEEEEECCcccEEEEEEEEEE
Confidence 9999999999998766678888888863
No 315
>PHA03269 envelope glycoprotein C; Provisional
Probab=97.64 E-value=0.0062 Score=66.16 Aligned_cols=157 Identities=17% Similarity=0.168 Sum_probs=97.2
Q ss_pred EEEEcCCCCCCCeEEEEEEEecC--ceeeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEeccc-C--ceEEEEEEC
Q psy574 62 NLAIQDSRKTDDGRYQCVVKNVA--GTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGD-A--VLTVHWKRL 136 (977)
Q Consensus 62 ~L~I~~v~~~D~G~Y~C~a~n~~--g~~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~-p--~~~i~W~k~ 136 (977)
.|.|.+++..++|.|.=++.+.. .......+.|.+..+|.+...+. .+.+|+...-.|.+..+ | ...+.|++|
T Consensus 290 pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVsV~p~--PVL~Ge~YkAtC~vA~YYPp~SvrlrWf~n 367 (566)
T PHA03269 290 SLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNITVIGD--PVLLGNPYAAYCKVNKYYPPHSVIVKWTSN 367 (566)
T ss_pred ceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCCCccccCC--ccccCCCceEEEEeeeecCCCceEEEEEeC
Confidence 39999999999999987765432 23345667778888887766654 47899999999999543 4 347999999
Q ss_pred CeeCCCC----ceEEeccce-EEEccCcc-C-CCe-----EEEEEEEe-CCee----EEEEEEEEEeeCCeEEecCCCcE
Q psy574 137 GSAMPED----RMSVLPSRS-LQLSDVRL-E-DAG-----EYVCEAEN-AVGK----ISASATLTVQMAPIVRERPSDLR 199 (977)
Q Consensus 137 ~~~l~~~----~~~~~~~~~-L~I~~v~~-~-D~G-----~Y~C~a~n-~~g~----~~~~~~L~V~~~p~~~~~p~~~~ 199 (977)
+.++... ......++. -.++-++. + ..+ ..+|.+.= ..+. .++.+.-.|..+|.+.+.
T Consensus 368 g~~V~~~~it~t~~~~~dGlFSrVSTLtlp~~~~~d~~PPsLrCeV~W~RDsVS~tRfnAaatP~VY~~PtISm~----- 442 (566)
T PHA03269 368 FGNIGKNFITDAIKENADGLFSSVSALHIPAQKNADYPPPAIQCNVLWIRDGVSHMKYSAAVTPDVYPFPNVSIE----- 442 (566)
T ss_pred CcccCccccccceeecCCCceEEEEEEeccCccccCCCCCCceEEEEEccCCchheecccccCCccccCCeEEEE-----
Confidence 9888642 122223332 22222222 2 223 45999863 2222 134444555566666543
Q ss_pred EeeCCeEEEEEEEecCCC--CeEEEEEcCee
Q psy574 200 LEVGRDAVFLCGIEGSPP--PSTFWMLEGNR 228 (977)
Q Consensus 200 v~~G~~v~L~C~~~g~p~--~~i~W~~~g~~ 228 (977)
+..|.- .|.+.-.|. ..+.|+.++..
T Consensus 443 FedG~A---VCtA~CVP~~~V~l~WlVgD~p 470 (566)
T PHA03269 443 IIDGHI---VCLAKCVPRGVVHFNWWINDIP 470 (566)
T ss_pred EeCCEE---EEecccccCCCceEEEEecCCC
Confidence 333332 377766655 37889987755
No 316
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=97.62 E-value=0.00023 Score=60.50 Aligned_cols=63 Identities=19% Similarity=0.267 Sum_probs=42.8
Q ss_pred EEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecC------cEEEEcCCCCCCCeEEEEEEEecCc
Q psy574 23 ALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG------TNLAIQDSRKTDDGRYQCVVKNVAG 85 (977)
Q Consensus 23 v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~------g~L~I~~v~~~D~G~Y~C~a~n~~g 85 (977)
++|.|.+..++|...|+|+|||+.+............+ ..|.|..-...|...|+|+|.+..-
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l 70 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESL 70 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhc
Confidence 68999997779999999999999984221111111122 2466665555566699999998653
No 317
>PF09294 Interfer-bind: Interferon-alpha/beta receptor, fibronectin type III; InterPro: IPR015373 Members of this family adopt a secondary structure consisting of seven beta-strands arranged in an immunoglobulin-like beta-sandwich, in a Greek-key topology. They are required for binding to interferon-alpha []. ; PDB: 1A21_A 3LQM_B 3ELA_T 1AHW_C 2A2Q_T 1TFH_B 1FAK_T 1WSS_T 1W2K_T 2FIR_T ....
Probab=97.61 E-value=0.0003 Score=63.30 Aligned_cols=90 Identities=20% Similarity=0.299 Sum_probs=60.7
Q ss_pred CCCceeEEEEecCcEEEEEeeCCCC----CCCCee------eeEEEEEEEecCCcceEEEEecCCcCeEEecCCCCCceE
Q psy574 643 GVPQLTDPVLLNATSVLLKWKPPPV----GTHNGV------IRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRY 712 (977)
Q Consensus 643 ~~P~~v~~~~~~~~sv~v~W~~p~~----~~~ng~------i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y 712 (977)
+||. +.+ ....++|.|.+.+|.. ...+.. -..|.|.|++.... ............++|.+|.|++.|
T Consensus 4 gPP~-v~v-~~~~~~l~V~i~~P~~~~~~~~~~~~l~~~~~~~~Y~v~~~~~~~~-~~~~~~~~~~~~~~l~~L~p~t~Y 80 (106)
T PF09294_consen 4 GPPS-VNV-SSCGGSLHVTIKPPMTPLRAGGKNSSLRDIYPSLSYNVSYWKNGSN-EKKKEIETKNSSVTLSDLKPGTNY 80 (106)
T ss_dssp -SSE-EEE-EEETTEEEEEEEESEEEEECSSSEEEHHHHHGG-EEEEEEEETTTS-CEEEEEESSSEEEEEES--TTSEE
T ss_pred cCCE-EEE-EECCCEEEEEEECCCcccccCCCCCcHHHhCCCeEEEEEEEeCCCc-cceEEEeecCCEEEEeCCCCCCCE
Confidence 3665 777 4467899999999940 111111 25699999996544 333445556778899999999999
Q ss_pred EEEEEEEcC--CCcCCCCCceEEee
Q psy574 713 SVSLAATNR--AGTGPYSRPALLSL 735 (977)
Q Consensus 713 ~~~V~A~~~--~G~g~~S~~~~~~t 735 (977)
.|+|+|... ...|.+|++.+++|
T Consensus 81 Cv~V~~~~~~~~~~s~~S~~~C~~t 105 (106)
T PF09294_consen 81 CVSVQAFSPSQNKNSQPSEPQCITT 105 (106)
T ss_dssp EEEEEEEECSSTEEEEEBSEEEEE-
T ss_pred EEEEEEEeccCCCcCCCCCCEeEeC
Confidence 999999433 34688999988876
No 318
>KOG1480|consensus
Probab=97.60 E-value=1.6e-05 Score=89.97 Aligned_cols=100 Identities=33% Similarity=0.547 Sum_probs=86.9
Q ss_pred CccccccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEE
Q psy574 1 ISLLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVV 80 (977)
Q Consensus 1 va~l~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a 80 (977)
+|++|-.|...|.-..|..+..++|.|..+.+.|...+.|+||+..+.. +..+....++.|+|..++..|.|+|+|+|
T Consensus 125 ~ay~rk~f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~p--d~n~~~~~d~~li~~~arlsd~~nytc~a 202 (909)
T KOG1480|consen 125 IAYLRKHFEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDP--DANVIRASDHNLIISQARLSDSGNYTCEA 202 (909)
T ss_pred HHHHHHhhccChhhheecccccccccccCcccchhhhhhccccCCCCCc--cccchhhhcCCccccchhhhhcccceeee
Confidence 4788899999999999999999999999999999999999999999965 44555566888999999999999999999
Q ss_pred EecCceeeeEeEEEEEEcCCeE
Q psy574 81 KNVAGTRESTDAVLRVLVKPYI 102 (977)
Q Consensus 81 ~n~~g~~~s~~~~l~V~~~P~~ 102 (977)
.|..+.+.+..+.+.|...-.+
T Consensus 203 ~ni~~~r~~~~~~v~vyv~ggw 224 (909)
T KOG1480|consen 203 TNIVAKRKSDPATVQVYVNGGW 224 (909)
T ss_pred ehhhccccccceEEEEEEcCcc
Confidence 9999888888888877754433
No 319
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=97.57 E-value=0.00069 Score=60.90 Aligned_cols=74 Identities=27% Similarity=0.496 Sum_probs=54.2
Q ss_pred CCeEEEEEEecccC-----------ceEEEEEEC-----Cee-----C-------------CCCceEEe------ccceE
Q psy574 114 SSIIVFECSVGGDA-----------VLTVHWKRL-----GSA-----M-------------PEDRMSVL------PSRSL 153 (977)
Q Consensus 114 G~~v~l~C~v~g~p-----------~~~i~W~k~-----~~~-----l-------------~~~~~~~~------~~~~L 153 (977)
|.+++|.|.+.-.| ...|.|++- +.. + -.+|..+. .+.+|
T Consensus 2 ~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~~~~g~asL 81 (117)
T cd05901 2 SGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHPEDQGDASL 81 (117)
T ss_pred CCCEEEeeEEEecCCCCCcccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccCCcCCceEE
Confidence 67899999986333 248999884 111 1 11344432 35689
Q ss_pred EEccCccCCCeEEEEEEEeCCeeEEEEEEEEEee
Q psy574 154 QLSDVRLEDAGEYVCEAENAVGKISASATLTVQM 187 (977)
Q Consensus 154 ~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~~ 187 (977)
.|.+++.+|+|.|+|.+.+.....+..+.|.|.+
T Consensus 82 ~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~G 115 (117)
T cd05901 82 TIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVSG 115 (117)
T ss_pred EEcccccccCEEEEEEEEECCcccEEEEEEEEEE
Confidence 9999999999999999999887788888888863
No 320
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=97.56 E-value=0.0007 Score=62.02 Aligned_cols=82 Identities=20% Similarity=0.220 Sum_probs=53.6
Q ss_pred cCCCcEEeeCCeEEEEEEEecCC----CCeEEEEEcCe------eeeec-C--------CCccccEEEEEc-cCCceEEE
Q psy574 194 RPSDLRLEVGRDAVFLCGIEGSP----PPSTFWMLEGN------RSLIY-P--------GDRVDNIQAEIT-SDGMNLLK 253 (977)
Q Consensus 194 ~p~~~~v~~G~~v~L~C~~~g~p----~~~i~W~~~g~------~~~~~-~--------~~~~~~~~~~~~-~~g~s~L~ 253 (977)
.|..+.+.+|++++|.|...... ...+.|++... .+... . ....+|+.+... ..+...|+
T Consensus 4 ~p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~ 83 (116)
T cd05715 4 TPREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIV 83 (116)
T ss_pred cCCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEE
Confidence 46677889999999999986532 24699987421 11111 0 111234444322 12346899
Q ss_pred EeecccCCCCeEEEEEEEcCCCc
Q psy574 254 IQNVSRTAAPLIILCLGVNAAGS 276 (977)
Q Consensus 254 I~~v~~~d~G~Y~~C~a~n~~g~ 276 (977)
|.+++.+|+|.|. |.+.|..+.
T Consensus 84 I~~v~~~D~G~Y~-C~v~~~~~~ 105 (116)
T cd05715 84 IHNLQFTDNGTYT-CDVKNPPDI 105 (116)
T ss_pred EeeCCcccCEEEE-EEEEeCCCC
Confidence 9999999999999 999887554
No 321
>smart00060 FN3 Fibronectin type 3 domain. One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.
Probab=97.53 E-value=0.00065 Score=56.94 Aligned_cols=80 Identities=30% Similarity=0.478 Sum_probs=56.0
Q ss_pred CCCCCeEEeeCCCceEEEEEcCCCCCCcccceEEEEEeecCCCCCCCCCCCCcccEEEeceecCcCeEEEEccCCCCeEE
Q psy574 400 PPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVGLTYT 479 (977)
Q Consensus 400 ~P~~~~v~~~~~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~i~~L~p~t~Y~ 479 (977)
+|.++.+......++.++|.++.... . .+|.+++....... ...|...........+.+.+|.|++.|.
T Consensus 3 ~p~~~~~~~~~~~~~~v~W~~~~~~~--~-~~y~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~i~~L~~~~~Y~ 71 (83)
T smart00060 3 PPSNLRVTDVTSTSVTLSWEPPPDDG--I-TGYIVGYRVEYREE--------GSSWKEVNVTPSSTSYTLTGLKPGTEYE 71 (83)
T ss_pred CCCcEEEEEEeCCEEEEEECCCCCCC--C-CccEEEEEEEEecC--------CCccEEEEecCCccEEEEeCcCCCCEEE
Confidence 34456677777779999999775522 1 77888877543321 0145555444446789999999999999
Q ss_pred EEEEEEcCCCC
Q psy574 480 FLVRALNSHGL 490 (977)
Q Consensus 480 ~~V~a~n~~G~ 490 (977)
|+|+|.+..|.
T Consensus 72 v~v~a~~~~g~ 82 (83)
T smart00060 72 FRVRAVNGAGE 82 (83)
T ss_pred EEEEEEcccCC
Confidence 99999987553
No 322
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=97.53 E-value=0.00011 Score=64.60 Aligned_cols=68 Identities=22% Similarity=0.312 Sum_probs=47.6
Q ss_pred eCCCcEEEEEECCCCCC-CCeEEEEeCCEEeecCCC-ceEEEecCc------EEEEcCCCCCCCeEEEEEEEecCc
Q psy574 18 AAGDTALLECGPPRGHP-EPTLVWKKNGHPIDFENS-KRLRLVDGT------NLAIQDSRKTDDGRYQCVVKNVAG 85 (977)
Q Consensus 18 ~~G~~v~L~C~~~~g~P-~~~v~W~k~g~~l~~~~~-~r~~~~~~g------~L~I~~v~~~D~G~Y~C~a~n~~g 85 (977)
..|+.++|.|.+....| ...|+|+|||+.+..... .......+| .|.|......|.|.|+|+|.+...
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~ 86 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESL 86 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence 57999999999944446 478999999999853321 122222333 366666666799999999998653
No 323
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=97.51 E-value=0.00081 Score=61.36 Aligned_cols=82 Identities=13% Similarity=0.169 Sum_probs=53.0
Q ss_pred cCCCcEEeeCCeEEEEEEEecCC----CCeEEEEEc----Cee--eeecCCC----c----cccEEEEEc-cCCceEEEE
Q psy574 194 RPSDLRLEVGRDAVFLCGIEGSP----PPSTFWMLE----GNR--SLIYPGD----R----VDNIQAEIT-SDGMNLLKI 254 (977)
Q Consensus 194 ~p~~~~v~~G~~v~L~C~~~g~p----~~~i~W~~~----g~~--~~~~~~~----~----~~~~~~~~~-~~g~s~L~I 254 (977)
.|..+.+.+|++++|.|.....+ ...|.|++. +.+ +...... . .+|+..... ..+...|.|
T Consensus 4 ~~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I 83 (115)
T cd05880 4 TSKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILI 83 (115)
T ss_pred cCceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEE
Confidence 45667899999999999986543 236999752 221 2111111 1 123333211 124468999
Q ss_pred eecccCCCCeEEEEEEEcCCCc
Q psy574 255 QNVSRTAAPLIILCLGVNAAGS 276 (977)
Q Consensus 255 ~~v~~~d~G~Y~~C~a~n~~g~ 276 (977)
.+++.+|+|.|+ |.+.|..+.
T Consensus 84 ~~v~~~D~G~Y~-C~v~~~~~~ 104 (115)
T cd05880 84 WQLQPTDNGTYT-CQVKNPPDV 104 (115)
T ss_pred eeCChhhCEEEE-EEEEeCCCC
Confidence 999999999999 999987654
No 324
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=97.42 E-value=0.00057 Score=62.66 Aligned_cols=70 Identities=23% Similarity=0.432 Sum_probs=52.0
Q ss_pred EeCCCceEEeCCCeEEEEEEeccc-CceEEEEEECC--ee---C----------CCCceEEe-----ccceEEEccCccC
Q psy574 103 IRGPKDTTVSASSIIVFECSVGGD-AVLTVHWKRLG--SA---M----------PEDRMSVL-----PSRSLQLSDVRLE 161 (977)
Q Consensus 103 ~~~p~~~~v~~G~~v~l~C~v~g~-p~~~i~W~k~~--~~---l----------~~~~~~~~-----~~~~L~I~~v~~~ 161 (977)
...|..+.+.+|++++|.|..... ....+.|+|.. .. + ..+|+.+. .+.+|.|.+++.+
T Consensus 3 ~q~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~ 82 (116)
T cd07706 3 TQAQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLE 82 (116)
T ss_pred EEeCCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHH
Confidence 456677889999999999998643 45679999952 11 0 12455543 2347999999999
Q ss_pred CCeEEEEEEEe
Q psy574 162 DAGEYVCEAEN 172 (977)
Q Consensus 162 D~G~Y~C~a~n 172 (977)
|+|.|.|.+..
T Consensus 83 Dsg~Y~C~~~~ 93 (116)
T cd07706 83 DSAKYFCALST 93 (116)
T ss_pred HCEEEEEEEEC
Confidence 99999999875
No 325
>PHA03270 envelope glycoprotein C; Provisional
Probab=97.40 E-value=0.012 Score=63.37 Aligned_cols=158 Identities=16% Similarity=0.212 Sum_probs=100.6
Q ss_pred EEEEcCCCCCCCeEEEEEEEecCc-eeeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEecc-cCc--eEEEEEECC
Q psy574 62 NLAIQDSRKTDDGRYQCVVKNVAG-TRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGG-DAV--LTVHWKRLG 137 (977)
Q Consensus 62 ~L~I~~v~~~D~G~Y~C~a~n~~g-~~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~g-~p~--~~i~W~k~~ 137 (977)
.|.|..++.+.+|.|+=...+..+ ....+.+.|..+.+|.+...+. .+.+|+...-.|.+.. +|. ..+.|++|+
T Consensus 183 ~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psvsv~~~--PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ng 260 (466)
T PHA03270 183 RLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRRPSLSIRPH--AVLEGEPFGATCVAANYYPGDRAAFRWFEGG 260 (466)
T ss_pred eEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEecCCcccccCC--ccccCCCceEEEEeeeecCCCceEEEEEeCC
Confidence 399999999999999999777654 3345557777788888776654 3789999999999944 343 479999999
Q ss_pred eeCCCCc-eE----EeccceEEEccCccCCCe------EEEEEEEe-CCe----eEEEEEEEEEeeCCeEEecCCCcEEe
Q psy574 138 SAMPEDR-MS----VLPSRSLQLSDVRLEDAG------EYVCEAEN-AVG----KISASATLTVQMAPIVRERPSDLRLE 201 (977)
Q Consensus 138 ~~l~~~~-~~----~~~~~~L~I~~v~~~D~G------~Y~C~a~n-~~g----~~~~~~~L~V~~~p~~~~~p~~~~v~ 201 (977)
..+...+ .. ...++...++-++.++.+ ..+|.+.= ... ...+.+.-.|..+|.+.+. +.
T Consensus 261 ~~V~~~~~i~~~~~~~~dGfs~vStvtsea~~~~~~PPsLrC~v~W~rd~vS~sR~nAa~~P~VY~~P~Isv~-----F~ 335 (466)
T PHA03270 261 DEVFAPERVRTRVDAQRDGFSATSTLTSEARAGLAPPRNLTCEFTWHRDSVSFSRRNATGAPTVLPRPTIEME-----FG 335 (466)
T ss_pred ccccCcceeeeeeEecCCCeeEEEEEeccccccCCCCCCceEEEEEccCCccceeecccccCccccCCeEEEE-----Ee
Confidence 9875321 11 113333344444444433 78999862 222 1234444555566666543 22
Q ss_pred eCCeEEEEEEEecCCC-CeEEEEEcCeee
Q psy574 202 VGRDAVFLCGIEGSPP-PSTFWMLEGNRS 229 (977)
Q Consensus 202 ~G~~v~L~C~~~g~p~-~~i~W~~~g~~~ 229 (977)
.|.- .|.+.-.|. ..+.|+.++...
T Consensus 336 dG~A---VCtA~CVPegV~l~W~V~D~~~ 361 (466)
T PHA03270 336 GDEA---VCTAACVPEGVTLAWLLGADPA 361 (466)
T ss_pred CCEE---EEeccccCCCCEEEEEecCCCC
Confidence 3332 366655443 378898877544
No 326
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=97.38 E-value=0.00055 Score=61.67 Aligned_cols=63 Identities=22% Similarity=0.480 Sum_probs=44.8
Q ss_pred EEeCCCeEEEEEEeccc-CceEEEEEECCee---------C--------------CCCceEEe--c---cceEEEccCcc
Q psy574 110 TVSASSIIVFECSVGGD-AVLTVHWKRLGSA---------M--------------PEDRMSVL--P---SRSLQLSDVRL 160 (977)
Q Consensus 110 ~v~~G~~v~l~C~v~g~-p~~~i~W~k~~~~---------l--------------~~~~~~~~--~---~~~L~I~~v~~ 160 (977)
.+.+|++++|.|.+.+. ....+.|||.... + ...++.+. . ...|+|.+++.
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~ 81 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP 81 (107)
T ss_pred EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence 57899999999998653 3457999996321 0 01234331 1 13599999999
Q ss_pred CCCeEEEEEEEe
Q psy574 161 EDAGEYVCEAEN 172 (977)
Q Consensus 161 ~D~G~Y~C~a~n 172 (977)
+|+|.|.|...+
T Consensus 82 ~Dsg~YyCa~~~ 93 (107)
T cd07700 82 EDSGTYFCMTVG 93 (107)
T ss_pred HHCEEEEEeEcC
Confidence 999999999863
No 327
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=97.38 E-value=0.0017 Score=62.37 Aligned_cols=90 Identities=13% Similarity=0.076 Sum_probs=63.3
Q ss_pred CcEEeeCCeEEEEEEEe-cCCCCeEEEEEcCeeeeecCCC-------ccccEEEEEccCCceEEEEeecccCCCCeEEEE
Q psy574 197 DLRLEVGRDAVFLCGIE-GSPPPSTFWMLEGNRSLIYPGD-------RVDNIQAEITSDGMNLLKIQNVSRTAAPLIILC 268 (977)
Q Consensus 197 ~~~v~~G~~v~L~C~~~-g~p~~~i~W~~~g~~~~~~~~~-------~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C 268 (977)
...|.+|++++|.|... +...+.+.|+|....+...... ..+|+.........+.|+|.++..+|+|.|+ |
T Consensus 24 ~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~-C 102 (189)
T PHA02987 24 KITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYT-C 102 (189)
T ss_pred EEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEE-E
Confidence 34678999999999984 5567789999975443322211 1245553332234469999999999999999 7
Q ss_pred EE-EcCCC-ceeEEEEEEEEC
Q psy574 269 LG-VNAAG-SDLARASLTVSG 287 (977)
Q Consensus 269 ~a-~n~~g-~~~~~~~l~V~~ 287 (977)
.. .-..| ..+..+-|.|..
T Consensus 103 ~F~tfp~G~~~~gt~CLtVt~ 123 (189)
T PHA02987 103 IFNTLLSKNNEKGVVCLNVTT 123 (189)
T ss_pred EEEecCCCCCceeEEEEEEEc
Confidence 54 44456 678888899987
No 328
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.37 E-value=0.00055 Score=60.56 Aligned_cols=73 Identities=14% Similarity=0.193 Sum_probs=51.3
Q ss_pred EEeeCCeEEEEEEEecC--CCCeEEEEEcCe---e-eeecC-----CCccccEEEEEccCCceEEEEeecccCCCCeEEE
Q psy574 199 RLEVGRDAVFLCGIEGS--PPPSTFWMLEGN---R-SLIYP-----GDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIIL 267 (977)
Q Consensus 199 ~v~~G~~v~L~C~~~g~--p~~~i~W~~~g~---~-~~~~~-----~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~ 267 (977)
.+.+|++++|.|...+. ....+.|++... + .+... .....++..... .+...|+|.+++.+|+|.|.
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~-~~~~~L~I~~~~~~Dsg~Y~- 79 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKS-GNTASLTISGAQTEDEADYY- 79 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEcc-CCEEEEEECCCChhhCEEEE-
Confidence 46789999999998765 456799998642 1 11110 112346776553 35578999999999999999
Q ss_pred EEEEcC
Q psy574 268 CLGVNA 273 (977)
Q Consensus 268 C~a~n~ 273 (977)
|.+.+.
T Consensus 80 C~~~~~ 85 (98)
T cd04984 80 CQVWDS 85 (98)
T ss_pred EEEccC
Confidence 987653
No 329
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=97.31 E-value=0.00055 Score=61.21 Aligned_cols=65 Identities=20% Similarity=0.298 Sum_probs=44.9
Q ss_pred EEeCCCcEEEEEECCCCCCCCeEEEEeCC----EE---ee---cC----------CCceEEEecC---cEEEEcCCCCCC
Q psy574 16 RVAAGDTALLECGPPRGHPEPTLVWKKNG----HP---ID---FE----------NSKRLRLVDG---TNLAIQDSRKTD 72 (977)
Q Consensus 16 ~v~~G~~v~L~C~~~~g~P~~~v~W~k~g----~~---l~---~~----------~~~r~~~~~~---g~L~I~~v~~~D 72 (977)
.+.+|++|+|.|.+ ...-...+.|+|.. .. |- .. ...|+....+ .+|.|.+++.+|
T Consensus 2 ~v~~G~~vtL~C~~-~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sD 80 (104)
T cd05720 2 DAELGQKVELKCEV-LNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKEN 80 (104)
T ss_pred cccCCCeEEEEEEe-cCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHH
Confidence 47899999999987 33344679999832 11 11 00 1345554322 359999999999
Q ss_pred CeEEEEEEE
Q psy574 73 DGRYQCVVK 81 (977)
Q Consensus 73 ~G~Y~C~a~ 81 (977)
+|.|.|.+.
T Consensus 81 sgtY~Ca~~ 89 (104)
T cd05720 81 EGYYFCSVA 89 (104)
T ss_pred CEEEEEEEc
Confidence 999999875
No 330
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=97.26 E-value=0.0022 Score=55.91 Aligned_cols=69 Identities=20% Similarity=0.413 Sum_probs=48.2
Q ss_pred CeEEEEEEecc-cCceEEEEEECCe----eC-----------C---CCceEEe----ccceEEEccCccCCCeEEEEEEE
Q psy574 115 SIIVFECSVGG-DAVLTVHWKRLGS----AM-----------P---EDRMSVL----PSRSLQLSDVRLEDAGEYVCEAE 171 (977)
Q Consensus 115 ~~v~l~C~v~g-~p~~~i~W~k~~~----~l-----------~---~~~~~~~----~~~~L~I~~v~~~D~G~Y~C~a~ 171 (977)
+.++|.|.... ....++.|.|... .+ . .+|..+. .+.+|.|.+++.+|+|.|+|.+.
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~ 80 (96)
T cd05889 1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLV 80 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEE
Confidence 46889999842 3466889998632 11 0 1344433 35789999999999999999986
Q ss_pred e-CCeeEEEEEEE
Q psy574 172 N-AVGKISASATL 183 (977)
Q Consensus 172 n-~~g~~~~~~~L 183 (977)
. ..|..++.+.+
T Consensus 81 t~P~g~~~~~i~~ 93 (96)
T cd05889 81 TYPQGSWEKVIEV 93 (96)
T ss_pred eCCCCCeEEEEEE
Confidence 4 56766666654
No 331
>KOG4367|consensus
Probab=97.25 E-value=0.00031 Score=73.95 Aligned_cols=82 Identities=22% Similarity=0.378 Sum_probs=67.6
Q ss_pred cCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCcceEEEEecCCcCeEEecCCCCCceEEEEEEEEcCCCcCCCCCceEE
Q psy574 654 NATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALL 733 (977)
Q Consensus 654 ~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~~G~g~~S~~~~~ 733 (977)
..++++|.|+.|+ .......||.++.-..+... ......+..+.+++.||.-++.|..+|.|+|.+|.+++|+.+.+
T Consensus 451 ~nns~t~~wkqp~--~~~~~~dg~~leld~g~~g~-frevy~g~etmctvdglhfns~y~arvka~n~tg~s~ys~tl~l 527 (699)
T KOG4367|consen 451 HNNSATLSWKQPP--LSTVPADGYILELDDGNGGQ-FREVYVGKETMCTVDGLHFNSTYNARVKAFNKTGVSPYSKTLVL 527 (699)
T ss_pred cCCceEEEeecCC--CCCCCCcceEEEeecCCCCc-eeEEEecCceeEEecceecchhHHHHHHHhhccCCCcccceeEe
Confidence 4578999999884 33456789999887754444 44556678999999999999999999999999999999999999
Q ss_pred eecCC
Q psy574 734 SLTSG 738 (977)
Q Consensus 734 ~t~~~ 738 (977)
+|..-
T Consensus 528 qts~v 532 (699)
T KOG4367|consen 528 QTSEV 532 (699)
T ss_pred eecce
Confidence 88753
No 332
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=97.24 E-value=0.0017 Score=55.20 Aligned_cols=59 Identities=19% Similarity=0.406 Sum_probs=41.4
Q ss_pred EEEEEEecc-cCceEEEEEECCeeCCCCceEEe--cc-------ceEEEccCccCCCeEEEEEEEeCCe
Q psy574 117 IVFECSVGG-DAVLTVHWKRLGSAMPEDRMSVL--PS-------RSLQLSDVRLEDAGEYVCEAENAVG 175 (977)
Q Consensus 117 v~l~C~v~g-~p~~~i~W~k~~~~l~~~~~~~~--~~-------~~L~I~~v~~~D~G~Y~C~a~n~~g 175 (977)
++|.|.+.| +|.+.|+|++++..+......+. .+ ..|.|.....+|...|+|+|.+...
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l 70 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQELEGAPTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESL 70 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEECCCcceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECccc
Confidence 689999955 59899999999998765332221 22 2344444556677899999998753
No 333
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=97.24 E-value=0.0014 Score=57.63 Aligned_cols=71 Identities=17% Similarity=0.279 Sum_probs=48.6
Q ss_pred eeCCeEEEEEEEecC-CC-CeEEEEEcCeeeeecCCCccccEEEEEccCCc----eEEEEeecccCCCCeEEEEEEEcCC
Q psy574 201 EVGRDAVFLCGIEGS-PP-PSTFWMLEGNRSLIYPGDRVDNIQAEITSDGM----NLLKIQNVSRTAAPLIILCLGVNAA 274 (977)
Q Consensus 201 ~~G~~v~L~C~~~g~-p~-~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~----s~L~I~~v~~~d~G~Y~~C~a~n~~ 274 (977)
..|+.++|.|.+.|. |. ..|+|+++|..+..... ........+|. +.|.|......|.+.|+ |+|.+..
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~----~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~-C~v~h~~ 85 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVT----TTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYT-CVVTHES 85 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCcee----ccccccCCCCCEEEEEEEEECHHHhCCCCCEE-EEEEeCC
Confidence 468899999999997 53 58999999987642111 01222222232 35677776667999999 9999876
Q ss_pred Cc
Q psy574 275 GS 276 (977)
Q Consensus 275 g~ 276 (977)
..
T Consensus 86 ~~ 87 (95)
T cd00098 86 LP 87 (95)
T ss_pred CC
Confidence 54
No 334
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.22 E-value=0.00085 Score=54.38 Aligned_cols=61 Identities=34% Similarity=0.609 Sum_probs=44.9
Q ss_pred EEEEEECCCCCCCCeEEEEeCCEEeecCCC-----ceEEEecCcEEEEcCCCCCCCeEEEEEEEecC
Q psy574 23 ALLECGPPRGHPEPTLVWKKNGHPIDFENS-----KRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVA 84 (977)
Q Consensus 23 v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~-----~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~ 84 (977)
++|.|.+ .+.+...+.|++++........ ..........|.|.+++.+|.|.|.|.+.+..
T Consensus 1 ~~l~C~~-~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 1 VTLTCLA-SGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred CEEEEEe-cCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence 4789999 5578889999998877643221 11112224569999999999999999998764
No 335
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=97.18 E-value=0.0016 Score=57.57 Aligned_cols=75 Identities=11% Similarity=0.200 Sum_probs=52.2
Q ss_pred EEeeCCeEEEEEEEec-CCCCeEEEEEcCee----eeec----CCCccccEEEEEc-cCCceEEEEeecccCCCCeEEEE
Q psy574 199 RLEVGRDAVFLCGIEG-SPPPSTFWMLEGNR----SLIY----PGDRVDNIQAEIT-SDGMNLLKIQNVSRTAAPLIILC 268 (977)
Q Consensus 199 ~v~~G~~v~L~C~~~g-~p~~~i~W~~~g~~----~~~~----~~~~~~~~~~~~~-~~g~s~L~I~~v~~~d~G~Y~~C 268 (977)
.+.+|++++|.|.... .....+.|+|.... ++.. .....+|+.+... ..+...|+|.+++.+|+|.|. |
T Consensus 3 ~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~-C 81 (98)
T cd05716 3 TGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYW-C 81 (98)
T ss_pred EEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEE-E
Confidence 5789999999998865 34567899986421 1110 1122456666532 245579999999999999999 9
Q ss_pred EEEcCC
Q psy574 269 LGVNAA 274 (977)
Q Consensus 269 ~a~n~~ 274 (977)
.+....
T Consensus 82 ~~~~~~ 87 (98)
T cd05716 82 GVGDDG 87 (98)
T ss_pred EcccCC
Confidence 877654
No 336
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=97.17 E-value=0.0033 Score=53.38 Aligned_cols=65 Identities=17% Similarity=0.218 Sum_probs=43.0
Q ss_pred EEEEEEEec-CCCCeEEEEEcCeeeeecCCCccccEEEEEccCC----ceEEEEeecccCCCCeEEEEEEEcCCCce
Q psy574 206 AVFLCGIEG-SPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDG----MNLLKIQNVSRTAAPLIILCLGVNAAGSD 277 (977)
Q Consensus 206 v~L~C~~~g-~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g----~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~ 277 (977)
+.|.|.+.+ .|.+.|+|++++..+... . .......++ .+.|.+.....++.+.|+ |.|.|.....
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~-----~-~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~-C~v~h~~l~~ 71 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFKGDKELKGV-----K-LKEEDENGKTFTVTSSLRFQVDREDDGAPII-CRVDHPALKS 71 (82)
T ss_pred EEEEEEecCcCcCCeEEEEECCEEccCc-----e-eeEecCCCCEEEEEEEEEEEcchhhCCCEEE-EEEeChhcCC
Confidence 689999976 488899999999876311 1 111111111 135666666666778999 9999987643
No 337
>KOG0613|consensus
Probab=97.14 E-value=0.0014 Score=79.76 Aligned_cols=425 Identities=11% Similarity=0.017 Sum_probs=227.2
Q ss_pred CcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEe----------------------------------cCcEEEEc
Q psy574 21 DTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV----------------------------------DGTNLAIQ 66 (977)
Q Consensus 21 ~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~----------------------------------~~g~L~I~ 66 (977)
..+.+.|.. |.|.+.+.|+.+|..+.....-++... ......|.
T Consensus 206 ~~v~~v~s~--gqp~~~~~~~~~g~~i~~~~~~~~s~t~e~s~~~i~~~l~~~~G~~~~~~~~~l~e~~~~~~~~t~~i~ 283 (1205)
T KOG0613|consen 206 SRVRAVVSA--GQPEPLERWEILGELIAPGSAPSMSVTLEASDRKIQLTLRAPRGPYSAHILGYLIEQRKHKGGNTKTIQ 283 (1205)
T ss_pred eeEEEEEec--CCCccchhhhhcccccCCCCccccccccchhheeeeEEeecCCCchHHHHhcchhhhcccCCCcccccc
Confidence 345567776 788888899888877753321111110 01136667
Q ss_pred CCCCCCCeEEEEEEEecCceeeeEeE-EEEEE--------------cCCe---EEeCCCceEEeCCCeEEEEEEecccCc
Q psy574 67 DSRKTDDGRYQCVVKNVAGTRESTDA-VLRVL--------------VKPY---IIRGPKDTTVSASSIIVFECSVGGDAV 128 (977)
Q Consensus 67 ~v~~~D~G~Y~C~a~n~~g~~~s~~~-~l~V~--------------~~P~---~~~~p~~~~v~~G~~v~l~C~v~g~p~ 128 (977)
+....+.+.|+|...+..+....... ...+. .+|. ............+..+++.|...+.+.
T Consensus 284 ~~~~~~~~s~t~~~~~~~~q~~~~v~~~~~i~~~~~~p~~~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m~~~~~~~~~ 363 (1205)
T KOG0613|consen 284 NDGPEPELSWTVADKRQGCQDRFKVTEEAPIGKGKPGPESLQAAAARPPEVPVGLVRNLSVTARDNTLVEMPTALSGTQK 363 (1205)
T ss_pred ccCCccccceeeecccCCcccceeeeEEeeccccccCchhhhhhccCCccccccccccceeccccCcceeecccccCCcC
Confidence 77778888999988877654332211 11111 0111 111122335566778999999988877
Q ss_pred eE-EEEEECCeeCCCCc---eEE---eccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEEeeC-----CeEEecCC
Q psy574 129 LT-VHWKRLGSAMPEDR---MSV---LPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMA-----PIVRERPS 196 (977)
Q Consensus 129 ~~-i~W~k~~~~l~~~~---~~~---~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~~~-----p~~~~~p~ 196 (977)
+. +.|+.++.....+- ... .....+.|..+...+.+.|.|.|.|..|........+|... +.......
T Consensus 364 p~~~~~~~~~~~~~~~~~~~~~~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~~~~~~~vs~~~~gt~~~~~kk~~ 443 (1205)
T KOG0613|consen 364 PDEAQGYHGEEVSSESLGALPCPVGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQTIAESTVSEEMPGTQPPKFKKDV 443 (1205)
T ss_pred CchheeecccccccccccccccccccccCcchhhhhcCcccccccccceeccCCcccccchhhcccccCCCCCccccccc
Confidence 76 99999866543221 111 13456889999999999999999999987655555555532 22222333
Q ss_pred CcEEeeC--CeEEEEEEEecCCCC--eEEEEEcCeeeeecCCCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEc
Q psy574 197 DLRLEVG--RDAVFLCGIEGSPPP--STFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVN 272 (977)
Q Consensus 197 ~~~v~~G--~~v~L~C~~~g~p~~--~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n 272 (977)
......+ +.+.+.|...+.+.+ .++|++++.+. .++...... +...+|.+.-....|.|.|. -....
T Consensus 444 ~~t~~L~~~~~i~~~~~~~s~~~~~~~~tt~~~~~~~-------s~~s~~l~r-~~~tslLlk~~~~~~~A~~~-~a~~~ 514 (1205)
T KOG0613|consen 444 STTDLLTVKDEITVRTPDSSTSMPMTTVTTIKDGLPL-------SDRSVTLTR-DVLTSLLLKVASLSDGAQYT-RALRT 514 (1205)
T ss_pred cccccccCCcccccccCCCCccccceeEeeccCCccc-------ccccccccc-cchhhheeeccCCCccchhh-hhhhc
Confidence 3344444 778889998887755 44555555432 112111111 24457888888889999985 22222
Q ss_pred CCCceeEE--EEEEEECCCCCCCCeEEeCCCceeecCCCcEEEEEEEccCceEEEEECCEEcC-------------CCCc
Q psy574 273 AAGSDLAR--ASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRGEGSVQWWRGEREVG-------------SGPR 337 (977)
Q Consensus 273 ~~g~~~~~--~~l~V~~~~~~~pp~i~~~p~~~~v~~g~~~~L~C~~~~~p~i~W~~~g~~l~-------------~~~~ 337 (977)
..+....+ ..+.-... .++.++....+. .+.+.+.|..-..... ...+
T Consensus 515 ~~~k~~~~~~~~l~~~~s---~a~~~~~~~~~~--------------~g~p~l~~~~~~~E~~~vs~~~~~a~~qlg~~~ 577 (1205)
T KOG0613|consen 515 LQGKPVPSLDRKLPAAKS---SAPKPIHTQENQ--------------PGTPTLEWEPKPAEASKVSLHYASATRQLGVWR 577 (1205)
T ss_pred cCCCCCCccccccccccc---CCcccccccccC--------------CCCcccccCCCcccccccchhhhhhhhhccCCc
Confidence 22221111 11110000 011000000000 0123344433222111 1111
Q ss_pred EEEecC-ceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEECCCCCCCcccCCCCCCCCCCCCCCCeEEeeCCCceEE
Q psy574 338 VNVTGD-GSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGLTL 416 (977)
Q Consensus 338 ~~~~~~-~sl~I~~v~~~d~G~Y~C~a~n~~G~~~~s~~l~v~~~~~~~~~~~~~~~~~~~p~~P~~~~v~~~~~~sv~l 416 (977)
...... .+.++-...+...+..+-.+.+..|....+..-.+. ...+...++..|..-.+..........
T Consensus 578 ~~~~r~gtt~t~~~~~p~~~~~~t~~~k~~~gE~~ps~~~~t~----------k~~D~~q~~~~~~~~~~~ks~~~~~k~ 647 (1205)
T KOG0613|consen 578 VPESRPGTTETIGSILPGHEYHVTIKAKNELGESRPSSKSTTL----------KWQDPSQLKRRPVSEPSYKSPDSSQKP 647 (1205)
T ss_pred ccccCCCcccccccccccccceeehhhhhcccccCCCCCCccc----------cccccccccccccCCccccccccccch
Confidence 111111 245666666677777777788877766444211110 111112233333333334445567788
Q ss_pred EEEcCCCCCCcccceEEEEEeecCCCCCCCCCCCCcccEEEeceecCcCeEEEEccCCCCeEEEEEEEEcCCCCCCC
Q psy574 417 AWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAP 493 (977)
Q Consensus 417 sW~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~G~s~~ 493 (977)
+|..+......+..-|.......+... .|............++....+.+.|.+...+.+..+....
T Consensus 648 s~l~~l~k~~~~a~~~~~~~~~vd~~~----------K~kv~~~~~e~d~~i~~~~~t~si~~p~k~~e~~~~~~~~ 714 (1205)
T KOG0613|consen 648 SKLVGLSKMDLPANLESQVKPTVVSSP----------KKKVKKKKQEKDLEILAKKGTTSIVEPEKPPESEAATPAE 714 (1205)
T ss_pred hcccchhhccccccceeeeeccccCCc----------cccccccccccchhhhccCCCCcccccccCCccccCCccc
Confidence 898887755555566666555544433 4444333334445567778888888888888887766443
No 338
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=97.10 E-value=0.0053 Score=51.37 Aligned_cols=76 Identities=12% Similarity=0.092 Sum_probs=52.1
Q ss_pred CcEEeeCCeEEEEEEEecCCC--CeEEEEEcCeeeeecCCCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCC
Q psy574 197 DLRLEVGRDAVFLCGIEGSPP--PSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAA 274 (977)
Q Consensus 197 ~~~v~~G~~v~L~C~~~g~p~--~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~ 274 (977)
+..+..|++++|+|.....+. +.|.|.-.++... +... .+..+|.+..+...|+|.++ |.+....
T Consensus 8 ~~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~----------~~~~--~~~ktL~~~qv~~qdSG~Wt-C~V~~~~ 74 (88)
T cd07694 8 SDHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSK----------QILN--QDKKTLNLVQLGPNDSGTWD-CIVSVNS 74 (88)
T ss_pred CCeeecCCcEEEEEecCCCCCCCccEEEeCCCCccc----------eecc--CCccEEEeceeCcccCCEEE-EEEEECc
Confidence 447889999999999965444 4999997765421 1111 13449999999999999999 9886543
Q ss_pred CceeEEEEEEE
Q psy574 275 GSDLARASLTV 285 (977)
Q Consensus 275 g~~~~~~~l~V 285 (977)
........+.|
T Consensus 75 k~~~~~~~V~V 85 (88)
T cd07694 75 SEKTLKLDIKV 85 (88)
T ss_pred eEEEEEeeEEE
Confidence 33333333333
No 339
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.07 E-value=0.0022 Score=51.86 Aligned_cols=58 Identities=31% Similarity=0.647 Sum_probs=45.8
Q ss_pred EEEEEEecccCceEEEEEECCeeCCCCce--------EEeccceEEEccCccCCCeEEEEEEEeCC
Q psy574 117 IVFECSVGGDAVLTVHWKRLGSAMPEDRM--------SVLPSRSLQLSDVRLEDAGEYVCEAENAV 174 (977)
Q Consensus 117 v~l~C~v~g~p~~~i~W~k~~~~l~~~~~--------~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~ 174 (977)
+.|.|.+.+.+...+.|++++........ .......|.|.++..+|.|.|.|.+.+..
T Consensus 1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred CEEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence 47899998778889999999877654321 12245679999999999999999998765
No 340
>PHA03269 envelope glycoprotein C; Provisional
Probab=97.04 E-value=0.056 Score=59.05 Aligned_cols=198 Identities=17% Similarity=0.231 Sum_probs=107.9
Q ss_pred ceEEEccCccCCCeEEEEEEEeCC-e--eEEEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEEecCCCC---eEEEEE
Q psy574 151 RSLQLSDVRLEDAGEYVCEAENAV-G--KISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPP---STFWML 224 (977)
Q Consensus 151 ~~L~I~~v~~~D~G~Y~C~a~n~~-g--~~~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~---~i~W~~ 224 (977)
-.|.|.+++..++|.|+-+..+.. + ..+..++|.+..+|.+.+.+ .-+.+|+...-.|.+..+-++ .+.|++
T Consensus 289 ~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVsV~p--~PVL~Ge~YkAtC~vA~YYPp~SvrlrWf~ 366 (566)
T PHA03269 289 FSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNITVIG--DPVLLGNPYAAYCKVNKYYPPHSVIVKWTS 366 (566)
T ss_pred cceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCCCccccC--CccccCCCceEEEEeeeecCCCceEEEEEe
Confidence 359999999999999997765432 2 35577778888888665543 467899999999999775443 588999
Q ss_pred cCeeeeecCCCccccEEEEEccCCc----eEEEEeecccCC--CCeEEEEEEEcCCCce-eEEEEEEEECCCCCCCCeEE
Q psy574 225 EGNRSLIYPGDRVDNIQAEITSDGM----NLLKIQNVSRTA--APLIILCLGVNAAGSD-LARASLTVSGPDPNPPPVIL 297 (977)
Q Consensus 225 ~g~~~~~~~~~~~~~~~~~~~~~g~----s~L~I~~v~~~d--~G~Y~~C~a~n~~g~~-~~~~~l~V~~~~~~~pp~i~ 297 (977)
|+.++.. ......+... .+|. ++|.+......| --..+ |.+.=..+.. .....-.+. +.-.++|.+.
T Consensus 367 ng~~V~~--~~it~t~~~~--~dGlFSrVSTLtlp~~~~~d~~PPsLr-CeV~W~RDsVS~tRfnAaat-P~VY~~PtIS 440 (566)
T PHA03269 367 NFGNIGK--NFITDAIKEN--ADGLFSSVSALHIPAQKNADYPPPAIQ-CNVLWIRDGVSHMKYSAAVT-PDVYPFPNVS 440 (566)
T ss_pred CCcccCc--cccccceeec--CCCceEEEEEEeccCccccCCCCCCce-EEEEEccCCchheecccccC-CccccCCeEE
Confidence 9887642 1111222222 2342 345443221112 34568 7654333332 221111111 1111233332
Q ss_pred eCCCceeecCCCcEEEEEEEcc----CceEEEEECCEEcCCCCcEEE----ecCceEEEec---cCCCC-CeEEEEEEE
Q psy574 298 FGPANQTLPLRSEARLRCQVRG----EGSVQWWRGEREVGSGPRVNV----TGDGSLVLTD---VTKED-SGEYTCVVK 364 (977)
Q Consensus 298 ~~p~~~~v~~g~~~~L~C~~~~----~p~i~W~~~g~~l~~~~~~~~----~~~~sl~I~~---v~~~d-~G~Y~C~a~ 364 (977)
+.+..|. ..|.+.- ...+.|..++........... ...|...|.+ +...| --.|+|.+.
T Consensus 441 -----m~FedG~---AVCtA~CVP~~~V~l~WlVgD~p~~~~~t~itG~C~ehPGLVNLRS~~pLS~~dgpveYTCrL~ 511 (566)
T PHA03269 441 -----IEIIDGH---IVCLAKCVPRGVVHFNWWINDIPIEHENSEILGVCDNNKRFVNLQSSCDTSELDGPITYSCHLD 511 (566)
T ss_pred -----EEEeCCE---EEEecccccCCCceEEEEecCCCCCCccceeeccCCCCCCceeecccccccccCCceeEEEEEe
Confidence 2233343 3466655 457999988766433222111 1234455555 23222 246999876
No 341
>PHA03270 envelope glycoprotein C; Provisional
Probab=97.04 E-value=0.074 Score=57.46 Aligned_cols=200 Identities=16% Similarity=0.203 Sum_probs=110.1
Q ss_pred cceEEEccCccCCCeEEEEEEEeCCee--EEEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEEecCCCC---eEEEEE
Q psy574 150 SRSLQLSDVRLEDAGEYVCEAENAVGK--ISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPP---STFWML 224 (977)
Q Consensus 150 ~~~L~I~~v~~~D~G~Y~C~a~n~~g~--~~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~---~i~W~~ 224 (977)
...|.|..++...+|.|+-...+..+. ..+.++|....+|.+.+.+ ..+.+|+...-.|.+..+-++ .+.|++
T Consensus 181 ~~~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psvsv~~--~PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ 258 (466)
T PHA03270 181 TQRLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRRPSLSIRP--HAVLEGEPFGATCVAANYYPGDRAAFRWFE 258 (466)
T ss_pred cceEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEecCCcccccC--CccccCCCceEEEEeeeecCCCceEEEEEe
Confidence 346999999999999999997776553 4456777777888766544 357899999999999765444 588999
Q ss_pred cCeeeeecCCCccccEEEEEccCCc---eEEEEeecccC-CCCeEEEEEEEcCCCce-eEEEEEEEECCCCCCCCeEEeC
Q psy574 225 EGNRSLIYPGDRVDNIQAEITSDGM---NLLKIQNVSRT-AAPLIILCLGVNAAGSD-LARASLTVSGPDPNPPPVILFG 299 (977)
Q Consensus 225 ~g~~~~~~~~~~~~~~~~~~~~~g~---s~L~I~~v~~~-d~G~Y~~C~a~n~~g~~-~~~~~l~V~~~~~~~pp~i~~~ 299 (977)
|+.++... ...+.......+|. ++|++...... ..-..+ |.+.=..+.. .....-.+ .+.-.++|.+.
T Consensus 259 ng~~V~~~---~~i~~~~~~~~dGfs~vStvtsea~~~~~~PPsLr-C~v~W~rd~vS~sR~nAa~-~P~VY~~P~Is-- 331 (466)
T PHA03270 259 GGDEVFAP---ERVRTRVDAQRDGFSATSTLTSEARAGLAPPRNLT-CEFTWHRDSVSFSRRNATG-APTVLPRPTIE-- 331 (466)
T ss_pred CCccccCc---ceeeeeeEecCCCeeEEEEEeccccccCCCCCCce-EEEEEccCCccceeecccc-cCccccCCeEE--
Confidence 99876321 11111122222341 34433332211 123678 8665433333 22211111 11111233332
Q ss_pred CCceeecCCCcEEEEEEEcc---CceEEEEECCEEcCCCCcEEE-----ecCceEEEeccCC-C-CCeEEEEEEE
Q psy574 300 PANQTLPLRSEARLRCQVRG---EGSVQWWRGEREVGSGPRVNV-----TGDGSLVLTDVTK-E-DSGEYTCVVK 364 (977)
Q Consensus 300 p~~~~v~~g~~~~L~C~~~~---~p~i~W~~~g~~l~~~~~~~~-----~~~~sl~I~~v~~-~-d~G~Y~C~a~ 364 (977)
+.+..| ...|.+.- ...+.|..++........... ...+...|.+..+ + +...|+|.+.
T Consensus 332 ---v~F~dG---~AVCtA~CVPegV~l~W~V~D~~~pa~~~~v~~G~C~~~PGlvNlrS~~plSd~~~eYTCrl~ 400 (466)
T PHA03270 332 ---MEFGGD---EAVCTAACVPEGVTLAWLLGADPAPAEKAAVAGGPCPGRPGLARVRSALPLSREHSEYTCRLV 400 (466)
T ss_pred ---EEEeCC---EEEEeccccCCCCEEEEEecCCCCCCccceeecccCCCCCCceeeecccccccCCceEEEEEe
Confidence 223333 34566666 457999988766544332221 1223344432211 1 2367999875
No 342
>KOG4152|consensus
Probab=97.02 E-value=0.0028 Score=68.81 Aligned_cols=127 Identities=20% Similarity=0.296 Sum_probs=86.0
Q ss_pred EECCCCCCcEEEEEEEEeecceeCCCCCceEEeccCC-CCCCCCceeEEEEecCcEEEEEeeCCCCCCC-CeeeeEEEEE
Q psy574 603 LVTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVRTLEC-EPSGVPQLTDPVLLNATSVLLKWKPPPVGTH-NGVIRTYQII 680 (977)
Q Consensus 603 ~i~~L~p~t~Y~~~V~a~n~~g~g~~s~~~~~~T~~~-~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~-ng~i~~Y~v~ 680 (977)
.-..|.+++-|+|+|.|.|..|.|++|....+.|... -|. +|..+++.. +-..+.+.|++| ..+ .|.|..|..+
T Consensus 650 ~k~~lv~Gq~yrfrV~aIng~G~gp~s~i~~~kTc~pG~P~-apS~~ri~k-~~eGi~l~wepp--t~p~sg~Iieys~y 725 (830)
T KOG4152|consen 650 VKTSLVTGQAYRFRVTAINGKGPGPASTILKLKTCAPGKPT-APSGARIKK-TIEGISLVWEPP--TKPGSGTIIEYSPY 725 (830)
T ss_pred cccccccccceeeeeeeeeccCCCchhhheeeeeccCCCCC-Ccccccccc-cccceeecccCC--CCCCCcceEEeehh
Confidence 3346999999999999999999999999888877644 454 677777654 445699999999 444 6889999876
Q ss_pred EEec------C-CcceEEEEecCCcCeEEe---------cCCCCCceEEEEEEEEcCCCcCCCCCceEE
Q psy574 681 VGGG------N-NSALINMTVSASTPTLLL---------TNLSAGIRYSVSLAATNRAGTGPYSRPALL 733 (977)
Q Consensus 681 ~~~~------~-~~~~~~~~~~~~~~~~~l---------~~L~p~t~Y~~~V~A~~~~G~g~~S~~~~~ 733 (977)
..-. + +........-+-.+.+.+ -+...+-.-.|+|.|.|..|+|+..+...+
T Consensus 726 lAi~tq~~~~~~sql~fmr~ycg~~t~c~vt~g~l~tA~~d~t~~paivfri~aknekGyGpatqvrwl 794 (830)
T KOG4152|consen 726 LAIITQAGATGVSQLPFMRSYCGIITTCVVTSGKLITAVPDITTGPAIVFRIVAKNEKGYGPATQVRWL 794 (830)
T ss_pred hHhhhhhhccCccccceeeeecccceeeEEecccceeeccccccCcceEEEEEecCCCCCCcceEEEec
Confidence 4221 1 111111111111222221 234456678899999999999997765544
No 343
>PHA03273 envelope glycoprotein C; Provisional
Probab=97.02 E-value=0.053 Score=59.14 Aligned_cols=154 Identities=19% Similarity=0.211 Sum_probs=95.5
Q ss_pred EEEcCCCCCCCeEEEEEEEecCce-eeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEecc-cC--ceEEEEEECCe
Q psy574 63 LAIQDSRKTDDGRYQCVVKNVAGT-RESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGG-DA--VLTVHWKRLGS 138 (977)
Q Consensus 63 L~I~~v~~~D~G~Y~C~a~n~~g~-~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~g-~p--~~~i~W~k~~~ 138 (977)
|.|..++..++|.|+=...+..+. .....+.|..+.+|.+...+. .+.+|+...-.|.+.. +| ...+.|++|+.
T Consensus 200 LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Psvsv~~~--PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~dg~ 277 (486)
T PHA03273 200 LTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPLVDLSVH--PSLKGENYRAVCVVASYFPHSSVKLRWYKNAK 277 (486)
T ss_pred eEEEecchhhceEEEEEEecCCCceeeeeEEEEEEecCCcccccCC--ccccCCCceEEEEeeeecCCCceEEEEEeCCe
Confidence 999999999999998776565443 233445566678888776654 4789999999999944 34 34799999999
Q ss_pred eCCC-Cc----eEEecc------ceEEEccCc-cCCCeEEEEEEEe-CCee----EEEEEEEEEeeCCeEEecCCCcEEe
Q psy574 139 AMPE-DR----MSVLPS------RSLQLSDVR-LEDAGEYVCEAEN-AVGK----ISASATLTVQMAPIVRERPSDLRLE 201 (977)
Q Consensus 139 ~l~~-~~----~~~~~~------~~L~I~~v~-~~D~G~Y~C~a~n-~~g~----~~~~~~L~V~~~p~~~~~p~~~~v~ 201 (977)
++.. .. .....+ ++|.+.... .+.-=..+|.+.= .... ..+.+.-.|..+|.+.+. +.
T Consensus 278 ~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~W~rd~vS~~RfsAt~~P~Vy~~P~Is~~-----F~ 352 (486)
T PHA03273 278 EVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIEWYRDEVSFARIAKAGTPSVFVAPTVSVT-----VE 352 (486)
T ss_pred eccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEEEccCCcceeeccccccCccccCCeEEEE-----Ee
Confidence 8872 21 111112 233333322 1222378999863 2221 123444455566666543 23
Q ss_pred eCCeEEEEEEEecCCC--CeEEEEEcC
Q psy574 202 VGRDAVFLCGIEGSPP--PSTFWMLEG 226 (977)
Q Consensus 202 ~G~~v~L~C~~~g~p~--~~i~W~~~g 226 (977)
.|+- .|.+.-.|. ..+.|+.++
T Consensus 353 ~G~A---VCtA~CVP~egV~l~W~v~D 376 (486)
T PHA03273 353 DGDA---VCTAKCVPSTGVFVSWSVND 376 (486)
T ss_pred CCEE---EEecccccCCCeeEEEEccC
Confidence 3332 377776665 578898876
No 344
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=97.00 E-value=0.0034 Score=57.71 Aligned_cols=79 Identities=8% Similarity=0.021 Sum_probs=53.4
Q ss_pred cCCCcEEeeCCeEEEEEEEecCC------CCeEEEEEcCe-----eeee-cC------CCccccEEEEEc-cCCceEEEE
Q psy574 194 RPSDLRLEVGRDAVFLCGIEGSP------PPSTFWMLEGN-----RSLI-YP------GDRVDNIQAEIT-SDGMNLLKI 254 (977)
Q Consensus 194 ~p~~~~v~~G~~v~L~C~~~g~p------~~~i~W~~~g~-----~~~~-~~------~~~~~~~~~~~~-~~g~s~L~I 254 (977)
.|..+.+.+|+.++|.|...... ...+.|++... .+.. .. ....+|+++... ..+...|.|
T Consensus 5 ~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I 84 (119)
T cd05712 5 MPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLI 84 (119)
T ss_pred CCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEE
Confidence 46667899999999999875322 24689998642 1111 11 112357776432 345578999
Q ss_pred eecccCCCCeEEEEEEEcC
Q psy574 255 QNVSRTAAPLIILCLGVNA 273 (977)
Q Consensus 255 ~~v~~~d~G~Y~~C~a~n~ 273 (977)
.+++.+|+|.|. |.....
T Consensus 85 ~~l~~~Dsg~Y~-C~~~~~ 102 (119)
T cd05712 85 SDAQPEDSGKYF-FRVELG 102 (119)
T ss_pred ccCChhhCeEEE-EEEEcC
Confidence 999999999999 987553
No 345
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=97.00 E-value=0.0022 Score=56.03 Aligned_cols=76 Identities=20% Similarity=0.320 Sum_probs=44.7
Q ss_pred ccceecccceEEeCCCcEEEEEECCCCCCCC-eEEEEeCCEEeecC-CCceEEEecCcEEE---EcCCCCCCCeEEEEEE
Q psy574 6 EEFRVQPKSQRVAAGDTALLECGPPRGHPEP-TLVWKKNGHPIDFE-NSKRLRLVDGTNLA---IQDSRKTDDGRYQCVV 80 (977)
Q Consensus 6 ~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~-~v~W~k~g~~l~~~-~~~r~~~~~~g~L~---I~~v~~~D~G~Y~C~a 80 (977)
|.+.+.+.... |+.++|.|.+....|.. .|.|+|||+.+... .........+|+.. .-.+..+|.+.|+|++
T Consensus 3 P~v~v~~~~~~---~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~V 79 (93)
T cd07698 3 PEVRVTRKRAP---DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCRV 79 (93)
T ss_pred CEEEEEecCCC---CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEEE
Confidence 44444443332 78899999994446664 89999999643221 11222333344322 1233345888999999
Q ss_pred EecC
Q psy574 81 KNVA 84 (977)
Q Consensus 81 ~n~~ 84 (977)
.+..
T Consensus 80 ~H~~ 83 (93)
T cd07698 80 EHSG 83 (93)
T ss_pred EeCC
Confidence 8753
No 346
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=96.98 E-value=0.0014 Score=56.79 Aligned_cols=64 Identities=20% Similarity=0.484 Sum_probs=44.3
Q ss_pred CCcEEEEEECCCCCCCCeEEEEeCCEEeec--------CCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecCc
Q psy574 20 GDTALLECGPPRGHPEPTLVWKKNGHPIDF--------ENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAG 85 (977)
Q Consensus 20 G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~--------~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g 85 (977)
|+.+.|.|.+..++|.+.|.|+.++..+.. ...+.+... ..|.+..-+..+...++|.|.+..-
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~--S~l~~~~~~~~~~~~~~C~~~~~~~ 85 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVS--STLTLTPTREDHGKTLTCRASHPAL 85 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEE--EEEEEETTGGGTTEEEEEEEEETTC
T ss_pred ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEE--EEEEEEcChHHCCeEEEEEEECCcc
Confidence 789999998878999999999999987711 111111111 2466765555567799999998753
No 347
>smart00406 IGv Immunoglobulin V-Type.
Probab=96.98 E-value=0.0017 Score=54.88 Aligned_cols=58 Identities=22% Similarity=0.467 Sum_probs=39.0
Q ss_pred cEEEEEECCCCCCC--CeEEEEeCCE-----Eeec-----------CCCceEEEecC-----cEEEEcCCCCCCCeEEEE
Q psy574 22 TALLECGPPRGHPE--PTLVWKKNGH-----PIDF-----------ENSKRLRLVDG-----TNLAIQDSRKTDDGRYQC 78 (977)
Q Consensus 22 ~v~L~C~~~~g~P~--~~v~W~k~g~-----~l~~-----------~~~~r~~~~~~-----g~L~I~~v~~~D~G~Y~C 78 (977)
+|+|.|.+ ..... ..+.|++... .+.. ...+|+.+... .+|.|.+++.+|+|.|.|
T Consensus 1 ~v~l~C~~-~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C 79 (81)
T smart00406 1 SVTLSCKA-SGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYC 79 (81)
T ss_pred CEEEEEEE-eccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEE
Confidence 47899988 33222 4799998431 1110 23456665543 369999999999999999
Q ss_pred EE
Q psy574 79 VV 80 (977)
Q Consensus 79 ~a 80 (977)
.+
T Consensus 80 ~v 81 (81)
T smart00406 80 AV 81 (81)
T ss_pred cC
Confidence 63
No 348
>PF10179 DUF2369: Uncharacterised conserved protein (DUF2369); InterPro: IPR019326 This is a proline-rich region of a group of proteins found from plants to fungi. The function is largely unknown, although the entry contains Fibronectin type-III domain-containing protein C4orf31, which promotes matrix assembly and cell adhesiveness.
Probab=96.88 E-value=0.29 Score=51.74 Aligned_cols=138 Identities=18% Similarity=0.133 Sum_probs=80.7
Q ss_pred cCeEEEEccCCCCeEEEEEEEEcCCCCCCCCCCCceEEeeccccccccccCCcceeecCCCCCCCcchHHHHhhcccccC
Q psy574 464 SPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGG 543 (977)
Q Consensus 464 ~~~~~i~~L~p~t~Y~~~V~a~n~~G~s~~S~~s~~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~g~~~~~~~~~l~~~~ 543 (977)
-..+.+.++.|+..|.+++.+.|.... .+ ...+......+...|-
T Consensus 127 ~~~f~l~~~~~g~~Yliri~~~~~~e~--~~--~~kV~aast~~~~~~~------------------------------- 171 (300)
T PF10179_consen 127 LRHFRLSGVKPGERYLIRIQISNSDEG--PS--TFKVQAASTNPSKQPY------------------------------- 171 (300)
T ss_pred eEEEEECCCCCCCeEEEEEEccCCCCC--ce--EEEEEEecCCcccCCC-------------------------------
Confidence 346789999999999999988764322 11 1111100111111111
Q ss_pred CceEEEEEee--E--eCCCeEEEEEEecCCCccceEEEEEEecCCC---------------------CCceEEEEeec--
Q psy574 544 GSLIELTEVK--P--MTSTSVKLTWEILNTDYIEGVYIYSRGLDPP---------------------ASVAMLTVLHA-- 596 (977)
Q Consensus 544 ~~~~~~l~~~--~--~~~tsv~lsW~~p~~~~i~~Y~v~y~~~~~~---------------------~~~~~~~~~~~-- 596 (977)
|..|.+..+. . .+=++++|.|.+-+... ..|-|+-++.... .+|..+.....
T Consensus 172 P~LP~d~~Ik~f~~lrtC~SvTIAW~~s~d~~-~kYCvy~~~~~~~~~~~~~~~~~n~C~~~~sr~k~e~v~Ck~~~~~n 250 (300)
T PF10179_consen 172 PQLPDDTSIKEFNKLRTCNSVTIAWLGSPDRS-IKYCVYRREEHSNYQERSVSRMPNQCLGPESRKKSEKVLCKYFHSPN 250 (300)
T ss_pred CCCCCCCceeEEcCCcccceEEEEEecCCCCC-ceEEEEEEEecCchhhhhhcccCccCCCCCccccceEEEEEEEcCCc
Confidence 2222334443 3 34479999999874444 6787776654431 11122211111
Q ss_pred ------CccceEEECCCCCCcEEEEEEEEeecceeCCCCCceEEecc
Q psy574 597 ------GEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVRTL 637 (977)
Q Consensus 597 ------~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~g~~s~~~~~~T~ 637 (977)
......+|.+|+||+.|.|.|.+.-..|..-+...+.++|.
T Consensus 251 ~~~~~~~~v~tetI~~L~PG~~Yl~dV~~~~~~G~sl~Y~s~~VkTr 297 (300)
T PF10179_consen 251 SSEDPQRAVTTETIKGLKPGTTYLFDVYVNGPSGQSLPYRSKWVKTR 297 (300)
T ss_pred cccccccccceeecccCCCCcEEEEEEEEecCCCceeecceEEEEec
Confidence 11234589999999999999999887777766666777664
No 349
>PHA03273 envelope glycoprotein C; Provisional
Probab=96.88 E-value=0.054 Score=59.10 Aligned_cols=198 Identities=17% Similarity=0.224 Sum_probs=107.8
Q ss_pred eEEEccCccCCCeEEEEEEEeCCeeEE--EEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEEecCCCC---eEEEEEcC
Q psy574 152 SLQLSDVRLEDAGEYVCEAENAVGKIS--ASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPP---STFWMLEG 226 (977)
Q Consensus 152 ~L~I~~v~~~D~G~Y~C~a~n~~g~~~--~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~---~i~W~~~g 226 (977)
.|.|..++..++|.|+-...+..+... ..+++....+|.+.+.+ ..+.+|+...-.|.+..+-++ .+.|++||
T Consensus 199 ~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Psvsv~~--~PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~dg 276 (486)
T PHA03273 199 PLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPLVDLSV--HPSLKGENYRAVCVVASYFPHSSVKLRWYKNA 276 (486)
T ss_pred ceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEecCCcccccC--CccccCCCceEEEEeeeecCCCceEEEEEeCC
Confidence 499999999999999987666555433 44444446777765543 467899999999999765443 68899999
Q ss_pred eeeeecCCCccccEEEEEccCC---ceEEEEeeccc-CCCCeEEEEEEEcCCCceeEEEEEEEEC-CCCCCCCeEEeCCC
Q psy574 227 NRSLIYPGDRVDNIQAEITSDG---MNLLKIQNVSR-TAAPLIILCLGVNAAGSDLARASLTVSG-PDPNPPPVILFGPA 301 (977)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~g---~s~L~I~~v~~-~d~G~Y~~C~a~n~~g~~~~~~~l~V~~-~~~~~pp~i~~~p~ 301 (977)
.++... ......+..... ++ .++|.+..... +..-..+ |.+.=..+..+.+ .+.-.. +.-.++|.+.
T Consensus 277 ~~V~~~-~~~~~~~~~~~~-gl~T~vStlt~~~~~~~~~PP~lr-C~v~W~rd~vS~~-RfsAt~~P~Vy~~P~Is---- 348 (486)
T PHA03273 277 KEVDFT-KYVTNASSVWVD-GLITRISTLSIPVDPDEEYTPSLR-CSIEWYRDEVSFA-RIAKAGTPSVFVAPTVS---- 348 (486)
T ss_pred eecccc-ccceeeEEEecC-CceEEEEEEeccCcccCCCCCCce-EEEEEccCCccee-eccccccCccccCCeEE----
Confidence 977411 111222222221 11 24555555322 3344678 8665433333221 111111 1111234332
Q ss_pred ceeecCCCcEEEEEEEcc----CceEEEEECCEEcCCCCcEEE-----ecCceEEEec---cCCCCCe--EEEEEEE
Q psy574 302 NQTLPLRSEARLRCQVRG----EGSVQWWRGEREVGSGPRVNV-----TGDGSLVLTD---VTKEDSG--EYTCVVK 364 (977)
Q Consensus 302 ~~~v~~g~~~~L~C~~~~----~p~i~W~~~g~~l~~~~~~~~-----~~~~sl~I~~---v~~~d~G--~Y~C~a~ 364 (977)
+.+..|+ ..|.+.- ...+.|..++..-....+..+ ...+...|.. +...| | .|+|.+.
T Consensus 349 -~~F~~G~---AVCtA~CVP~egV~l~W~v~D~~p~a~~~~~~tG~C~~~PglvNlrS~~pls~~d-gp~eYTCrl~ 420 (486)
T PHA03273 349 -VTVEDGD---AVCTAKCVPSTGVFVSWSVNDHLPGVPSQDMTTGVCSSHPGLVNMQSRRPLSEEN-GEREYSCIIE 420 (486)
T ss_pred -EEEeCCE---EEEecccccCCCeeEEEEccCCCCCCcccccccccCCCCCCceeeeccccccccC-CceeEEEEEe
Confidence 2233333 3466665 457999887631111111111 2334456655 33332 4 7999876
No 350
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=96.87 E-value=0.0033 Score=52.37 Aligned_cols=62 Identities=23% Similarity=0.276 Sum_probs=40.5
Q ss_pred cEEEEEECCCCCCC-CeEEEEeCCEEeecCCC-ceEEEecCc------EEEEcCCCCCCCeEEEEEEEec
Q psy574 22 TALLECGPPRGHPE-PTLVWKKNGHPIDFENS-KRLRLVDGT------NLAIQDSRKTDDGRYQCVVKNV 83 (977)
Q Consensus 22 ~v~L~C~~~~g~P~-~~v~W~k~g~~l~~~~~-~r~~~~~~g------~L~I~~v~~~D~G~Y~C~a~n~ 83 (977)
.++|.|.+....|. ..|.|+|||+.+..+.. .......+| .|.|.....++...|+|++.+.
T Consensus 1 ~~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~ 70 (75)
T smart00407 1 KATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHE 70 (75)
T ss_pred CeEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEc
Confidence 47899999555676 69999999997522110 111112233 4666666667778999999865
No 351
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=96.86 E-value=0.0034 Score=56.11 Aligned_cols=72 Identities=14% Similarity=0.337 Sum_probs=49.4
Q ss_pred EEeeCCeEEEEEEEecCCCCeEEEEEcCee-------eeecCC--C--------ccccEEEEEccCCceEEEEeecccCC
Q psy574 199 RLEVGRDAVFLCGIEGSPPPSTFWMLEGNR-------SLIYPG--D--------RVDNIQAEITSDGMNLLKIQNVSRTA 261 (977)
Q Consensus 199 ~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~-------~~~~~~--~--------~~~~~~~~~~~~g~s~L~I~~v~~~d 261 (977)
.+.+|++++|.|.........+.|++.... +..... . ...++..... .....|+|.+++.+|
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~-~~~~~L~I~~~~~sD 80 (104)
T cd05720 2 DAELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRS-SNSFVLTLKNFQKEN 80 (104)
T ss_pred cccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEec-CCEEEEEECCCCHHH
Confidence 467899999999986655567999986522 111110 0 1345655443 355689999999999
Q ss_pred CCeEEEEEEEc
Q psy574 262 APLIILCLGVN 272 (977)
Q Consensus 262 ~G~Y~~C~a~n 272 (977)
+|.|. |.+.+
T Consensus 81 sgtY~-Ca~~~ 90 (104)
T cd05720 81 EGYYF-CSVAS 90 (104)
T ss_pred CEEEE-EEEcc
Confidence 99999 97653
No 352
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=96.86 E-value=0.0059 Score=53.23 Aligned_cols=73 Identities=14% Similarity=0.279 Sum_probs=45.4
Q ss_pred eecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCc------EEEEcCCCCCCCeEEEEEEEe
Q psy574 9 RVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGT------NLAIQDSRKTDDGRYQCVVKN 82 (977)
Q Consensus 9 ~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g------~L~I~~v~~~D~G~Y~C~a~n 82 (977)
..++..+..-......+.|.+..|.|.+.|.|+++.... .........+| .|.+.....+|...|+|++.+
T Consensus 4 ~~~~~~~~~~~~~~~va~C~s~~gkP~a~ItW~~~~~~~---~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h 80 (95)
T cd05719 4 SAEAGPVALGGEPVTVATCVSANGKPPATISWETTLGGE---AETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSH 80 (95)
T ss_pred ccceeccccCCCccEEEEEECCCCcCCCEEEEEeCCCCc---ceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeC
Confidence 344544545555677889999899999999999971111 01111111222 466655555555599999988
Q ss_pred cC
Q psy574 83 VA 84 (977)
Q Consensus 83 ~~ 84 (977)
..
T Consensus 81 ~~ 82 (95)
T cd05719 81 PT 82 (95)
T ss_pred cc
Confidence 65
No 353
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=96.85 E-value=0.0045 Score=53.99 Aligned_cols=67 Identities=24% Similarity=0.291 Sum_probs=42.2
Q ss_pred eCCCcEEEEEECCCCCCCC-eEEEEeCCEEeecC-CCceEEEecCcEEEEc---CCCCCCCeEEEEEEEecC
Q psy574 18 AAGDTALLECGPPRGHPEP-TLVWKKNGHPIDFE-NSKRLRLVDGTNLAIQ---DSRKTDDGRYQCVVKNVA 84 (977)
Q Consensus 18 ~~G~~v~L~C~~~~g~P~~-~v~W~k~g~~l~~~-~~~r~~~~~~g~L~I~---~v~~~D~G~Y~C~a~n~~ 84 (977)
..|+.++|.|.+...+|.. .+.|+|||+.+... ......-..+|+..+. .+...+...|+|++....
T Consensus 12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~~~~~~~ysC~V~H~~ 83 (94)
T cd05766 12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETTPSRGDTYTCVVEHSS 83 (94)
T ss_pred cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEcCCCCCEEEEEEEeCC
Confidence 4689999999996657765 89999999997432 1111112223332211 223345669999998764
No 354
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=96.84 E-value=0.91 Score=48.62 Aligned_cols=123 Identities=15% Similarity=0.119 Sum_probs=74.3
Q ss_pred EEeeCCeEEEEEEEec---CCCCeEEEEEcCeeee------------ecCCCccccEEEEEcc---C--CceEEEEeecc
Q psy574 199 RLEVGRDAVFLCGIEG---SPPPSTFWMLEGNRSL------------IYPGDRVDNIQAEITS---D--GMNLLKIQNVS 258 (977)
Q Consensus 199 ~v~~G~~v~L~C~~~g---~p~~~i~W~~~g~~~~------------~~~~~~~~~~~~~~~~---~--g~s~L~I~~v~ 258 (977)
.+..|..+.|.|...- .....+.|...|-++- .........+.+..-. + ..++|+|.++.
T Consensus 275 ~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIkka~ 354 (500)
T PHA02914 275 MLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIKKAH 354 (500)
T ss_pred EeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEeeeEE
Confidence 5566999999998854 3445788987653321 0011112233333211 1 23799999999
Q ss_pred cCCCCeEEEEEEEcCCCceeEEEEEEEECCCCCCCCeEEeCCCceeecC-CCcEEEEEEEcc----CceEEEEECCEEcC
Q psy574 259 RTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPL-RSEARLRCQVRG----EGSVQWWRGEREVG 333 (977)
Q Consensus 259 ~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~~~~~~pp~i~~~p~~~~v~~-g~~~~L~C~~~~----~p~i~W~~~g~~l~ 333 (977)
...+|=|+ |+|....-......-|.|.+ .-.+ ..... .......|-+-. +++|.|+-+|....
T Consensus 355 I~N~GCY~-~~a~~g~~~~ec~~Cl~V~d-----~V~f------~W~~e~~n~T~V~Cyv~sy~~kp~si~wkvnGV~~~ 422 (500)
T PHA02914 355 INNAGCYE-AQAFMGKFKEECRHCFKVAD-----HVFF------KWNTEGDNETKVACYAAQYDMQPFSILWKSNGVSFG 422 (500)
T ss_pred EEcCCceE-EEEecCcchhhhhhheEecc-----EEEE------EEEeccCceEEEEEEEEecccCCceeEEEEccEEec
Confidence 99999999 99987644444444455543 1111 11222 334566788776 66799999987553
No 355
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=96.84 E-value=0.0047 Score=52.45 Aligned_cols=58 Identities=14% Similarity=0.354 Sum_probs=41.4
Q ss_pred EEEEEEecc-cCceEEEEEECCeeCCCCceEEe---c------cceEEEccCccCCCeEEEEEEEeCC
Q psy574 117 IVFECSVGG-DAVLTVHWKRLGSAMPEDRMSVL---P------SRSLQLSDVRLEDAGEYVCEAENAV 174 (977)
Q Consensus 117 v~l~C~v~g-~p~~~i~W~k~~~~l~~~~~~~~---~------~~~L~I~~v~~~D~G~Y~C~a~n~~ 174 (977)
++|.|.+.| +|...|+|+|++..+........ . ...|.+..-..+|...|+|++.+..
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~ 69 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHES 69 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechh
Confidence 689999955 78899999999998754322111 1 2356666555667789999999864
No 356
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=96.83 E-value=0.005 Score=55.44 Aligned_cols=69 Identities=20% Similarity=0.371 Sum_probs=45.7
Q ss_pred ceEEeCCCcEEEEEECCCCCCC-CeEEEEeCCEEeecCCCceEEEecCc-------EEEEcCCCCCCCe-EEEEEEEecC
Q psy574 14 SQRVAAGDTALLECGPPRGHPE-PTLVWKKNGHPIDFENSKRLRLVDGT-------NLAIQDSRKTDDG-RYQCVVKNVA 84 (977)
Q Consensus 14 ~~~v~~G~~v~L~C~~~~g~P~-~~v~W~k~g~~l~~~~~~r~~~~~~g-------~L~I~~v~~~D~G-~Y~C~a~n~~ 84 (977)
...+..|+.++|.|.+...+|. ..|+|+|||+.+... ........++ .|.+.. ...|.| .|.|.+.+..
T Consensus 15 ~~~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~-~~~~~p~~d~~ty~~~S~L~~~~-~~~d~~~~ytC~V~H~~ 92 (111)
T cd05772 15 SGRANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAE-QPNITPEGDSVSYNVTSTVQVKL-TEDDVHSQVTCEVQHRT 92 (111)
T ss_pred hhccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECccc-ccceeeCCCCCcEEEEEEEEEEC-ccccccCceEEEEEeCC
Confidence 3456688999999999777885 699999999998432 1222222222 354543 344444 6999998864
No 357
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=96.76 E-value=0.0066 Score=55.55 Aligned_cols=78 Identities=9% Similarity=0.151 Sum_probs=53.4
Q ss_pred cCCCcEEeeCCeEEEEEEEecCC--CCeEEEEEcCe---eeee---c--------CCCccccEEEEEccC-CceEEEEee
Q psy574 194 RPSDLRLEVGRDAVFLCGIEGSP--PPSTFWMLEGN---RSLI---Y--------PGDRVDNIQAEITSD-GMNLLKIQN 256 (977)
Q Consensus 194 ~p~~~~v~~G~~v~L~C~~~g~p--~~~i~W~~~g~---~~~~---~--------~~~~~~~~~~~~~~~-g~s~L~I~~ 256 (977)
.|....+.+|++++|.|...... ...+.|+|... +..+ . .....+|+....... ....|+|.+
T Consensus 3 ~~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~ 82 (117)
T cd04981 3 ESGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNS 82 (117)
T ss_pred cCCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECC
Confidence 45667889999999999886543 45689998642 2111 1 111235677664422 235799999
Q ss_pred cccCCCCeEEEEEEEc
Q psy574 257 VSRTAAPLIILCLGVN 272 (977)
Q Consensus 257 v~~~d~G~Y~~C~a~n 272 (977)
++.+|+|.|. |.+..
T Consensus 83 ~~~~Dsa~Yy-Ca~~~ 97 (117)
T cd04981 83 LTPEDTAVYY-CARGL 97 (117)
T ss_pred CCHHHCEEEE-EEEEc
Confidence 9999999999 97754
No 358
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=96.76 E-value=0.0055 Score=52.98 Aligned_cols=62 Identities=19% Similarity=0.338 Sum_probs=43.1
Q ss_pred CCeEEEEEEe-cccCceEEEEEECCeeCCCCceEE--e-------ccceEEEccCccCCCeEEEEEEEeCCe
Q psy574 114 SSIIVFECSV-GGDAVLTVHWKRLGSAMPEDRMSV--L-------PSRSLQLSDVRLEDAGEYVCEAENAVG 175 (977)
Q Consensus 114 G~~v~l~C~v-~g~p~~~i~W~k~~~~l~~~~~~~--~-------~~~~L~I~~v~~~D~G~Y~C~a~n~~g 175 (977)
|+.+.|.|.+ .|+|.+.|.|+.++..+....... . ....|.+..-..++...++|.|.+...
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~ 85 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPAL 85 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTC
T ss_pred ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCcc
Confidence 7899999987 788999999999998772111111 1 113566665556677889999998754
No 359
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=96.69 E-value=0.019 Score=50.04 Aligned_cols=80 Identities=18% Similarity=0.224 Sum_probs=45.1
Q ss_pred CCeEEecCCCcEEeeCCeEEEEEEEecC-CCC-eEEEEEcCeeeeecCCCccccEEEEEccCCc-eEEEEeecccCCCCe
Q psy574 188 APIVRERPSDLRLEVGRDAVFLCGIEGS-PPP-STFWMLEGNRSLIYPGDRVDNIQAEITSDGM-NLLKIQNVSRTAAPL 264 (977)
Q Consensus 188 ~p~~~~~p~~~~v~~G~~v~L~C~~~g~-p~~-~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~-s~L~I~~v~~~d~G~ 264 (977)
+|.+.+.+.... ++.++|.|.+.|+ |.. .+.|+++|..... ..... ....+.++. +....-.+...+...
T Consensus 2 pP~v~v~~~~~~---~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~--~~~~~--~~~~~~d~ty~~~s~l~v~~~~~~~ 74 (93)
T cd07698 2 PPEVRVTRKRAP---DGSLTLSCHATGFYPRDIEVTWLRDGEDSVD--DVESG--EILPNGDGTYQLWVTLEVPPEDKAR 74 (93)
T ss_pred CCEEEEEecCCC---CCcEEEEEEEEEEeCCCcEEEEEECCEECcc--ccccc--ceEECCCCeEEEEEEEEECCCCCCE
Confidence 444444433332 7789999999996 443 8899999963211 11111 122222332 122223344458899
Q ss_pred EEEEEEEcCCC
Q psy574 265 IILCLGVNAAG 275 (977)
Q Consensus 265 Y~~C~a~n~~g 275 (977)
|+ |.+.+...
T Consensus 75 yt-C~V~H~~~ 84 (93)
T cd07698 75 YS-CRVEHSGL 84 (93)
T ss_pred EE-EEEEeCCC
Confidence 99 99987654
No 360
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=96.69 E-value=0.0049 Score=53.37 Aligned_cols=66 Identities=21% Similarity=0.336 Sum_probs=43.0
Q ss_pred EeCCCcEEEEEECCCCCC-CCeEEEEeCCEEeecCCC-ceEEEecCcEEEEc---CCCCCCCeEEEEEEEec
Q psy574 17 VAAGDTALLECGPPRGHP-EPTLVWKKNGHPIDFENS-KRLRLVDGTNLAIQ---DSRKTDDGRYQCVVKNV 83 (977)
Q Consensus 17 v~~G~~v~L~C~~~~g~P-~~~v~W~k~g~~l~~~~~-~r~~~~~~g~L~I~---~v~~~D~G~Y~C~a~n~ 83 (977)
+..|+..+|.|.+...+| ...|.|+|||+.+. +.. ..+....+++..+. .+.+.+...|.|++...
T Consensus 12 ~~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~ 82 (93)
T cd05770 12 AENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHN 82 (93)
T ss_pred CcCCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEEC
Confidence 345777899999955466 45899999999985 221 12223334543322 33466777999999875
No 361
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=96.68 E-value=0.014 Score=52.62 Aligned_cols=72 Identities=15% Similarity=0.255 Sum_probs=43.7
Q ss_pred CcEEeeCCeEEEEEEEecCCC--CeEEEEEcCeeeeecCCCccccEEEEEccCC-c----eEEEEeecccCCC-CeEEEE
Q psy574 197 DLRLEVGRDAVFLCGIEGSPP--PSTFWMLEGNRSLIYPGDRVDNIQAEITSDG-M----NLLKIQNVSRTAA-PLIILC 268 (977)
Q Consensus 197 ~~~v~~G~~v~L~C~~~g~p~--~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g-~----s~L~I~~v~~~d~-G~Y~~C 268 (977)
......|+.++|.|.+.++-+ ..++|+|||..+... .. ......++ . +.|.+..- ..|. -.|+ |
T Consensus 15 ~~~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~----~~--~~~p~~d~~ty~~~S~L~~~~~-~~d~~~~yt-C 86 (111)
T cd05772 15 SGRANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAE----QP--NITPEGDSVSYNVTSTVQVKLT-EDDVHSQVT-C 86 (111)
T ss_pred hhccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECccc----cc--ceeeCCCCCcEEEEEEEEEECc-cccccCceE-E
Confidence 334557888999999988544 488999999886321 01 11111121 1 25556543 3444 4599 9
Q ss_pred EEEcCCCc
Q psy574 269 LGVNAAGS 276 (977)
Q Consensus 269 ~a~n~~g~ 276 (977)
.+.+....
T Consensus 87 ~V~H~~l~ 94 (111)
T cd05772 87 EVQHRTLQ 94 (111)
T ss_pred EEEeCCCC
Confidence 99887543
No 362
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=96.60 E-value=0.0055 Score=53.36 Aligned_cols=74 Identities=16% Similarity=0.268 Sum_probs=45.7
Q ss_pred cccceEEeCCCcEEEEEECCCCCCC-CeEEEEeCCEEeecCC-CceEEEecCc------EEEEcCCCCCCCeEEEEEEEe
Q psy574 11 QPKSQRVAAGDTALLECGPPRGHPE-PTLVWKKNGHPIDFEN-SKRLRLVDGT------NLAIQDSRKTDDGRYQCVVKN 82 (977)
Q Consensus 11 ~p~~~~v~~G~~v~L~C~~~~g~P~-~~v~W~k~g~~l~~~~-~~r~~~~~~g------~L~I~~v~~~D~G~Y~C~a~n 82 (977)
.|........+.++|.|.+....|. ..|.|+|||+.+.... ........++ .|.|..-...+...|.|++.+
T Consensus 5 ~ps~~~~~~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H 84 (94)
T cd05847 5 HSSCCDTGTSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTH 84 (94)
T ss_pred CcChHHcCCCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEE
Confidence 3444434466779999999555675 6899999999873211 0111112222 355654444466799999987
Q ss_pred cC
Q psy574 83 VA 84 (977)
Q Consensus 83 ~~ 84 (977)
..
T Consensus 85 ~~ 86 (94)
T cd05847 85 QG 86 (94)
T ss_pred CC
Confidence 64
No 363
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=96.57 E-value=0.011 Score=51.48 Aligned_cols=68 Identities=9% Similarity=0.235 Sum_probs=42.5
Q ss_pred eEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEee-----cCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecC
Q psy574 15 QRVAAGDTALLECGPPRGHPEPTLVWKKNGHPID-----FENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVA 84 (977)
Q Consensus 15 ~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~-----~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~ 84 (977)
+..-.-..+.+.|....|.|.+.|.|+++..... ...++++++. ..|.+..-..+|...|+|++.+..
T Consensus 10 ~~~~~~~~~va~C~s~~gkPaa~IsW~~~~~g~~~~~~~~~~~gt~tv~--S~l~~~P~~~d~Gk~ltC~v~h~a 82 (95)
T cd07703 10 VSAGTIPVPVAKCVSANGRPPARISWSSTLGGNANTTSKENGDGTVTVT--SEYSLVPTPEANGKEVTCKVEHET 82 (95)
T ss_pred eecCCCccEEEEEEcCCCCCCcEEEEEcCCCCCeeEEEEeCCCCCEEEE--EEEEEecCHHHCCCEEEEEEeCcc
Confidence 3333346778999988899999999999721110 1111222221 246665555555669999999864
No 364
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=96.57 E-value=0.0026 Score=56.23 Aligned_cols=73 Identities=21% Similarity=0.287 Sum_probs=46.8
Q ss_pred ccceEEeCCCcEEEEEECCCCCC-CCeEEEEeCCEEeecCCC-ceEEEecCc------EEEEcCCCCCCCeEEEEEEEec
Q psy574 12 PKSQRVAAGDTALLECGPPRGHP-EPTLVWKKNGHPIDFENS-KRLRLVDGT------NLAIQDSRKTDDGRYQCVVKNV 83 (977)
Q Consensus 12 p~~~~v~~G~~v~L~C~~~~g~P-~~~v~W~k~g~~l~~~~~-~r~~~~~~g------~L~I~~v~~~D~G~Y~C~a~n~ 83 (977)
|.......++.++|.|.+...+| ...|.|+|||+.+..+.. .......+| .|.+..-...+...|+|.+...
T Consensus 9 p~~~~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~ 88 (100)
T cd07699 9 PSSEELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHE 88 (100)
T ss_pred CCHHHHccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEec
Confidence 33344557888999999955577 568999999999842210 111112234 3555444445567999999875
Q ss_pred C
Q psy574 84 A 84 (977)
Q Consensus 84 ~ 84 (977)
.
T Consensus 89 ~ 89 (100)
T cd07699 89 G 89 (100)
T ss_pred C
Confidence 3
No 365
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=96.56 E-value=0.0053 Score=48.14 Aligned_cols=52 Identities=21% Similarity=0.414 Sum_probs=36.4
Q ss_pred EeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEe
Q psy574 17 VAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKN 82 (977)
Q Consensus 17 v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n 82 (977)
-..|.+|+|+|.. . .. .+.|++|++.+.. . +..+.+.+.. ++.|.|+|.+.+
T Consensus 4 sisGTtVtlTCP~-~--~~-~i~W~~n~~~~~g-~--------~~~~~~~~~~-e~~G~Y~C~~~~ 55 (65)
T cd07692 4 SISGTTVTVTCPL-S--GD-DIKWKKNDQVSQG-S--------DEKYLSLNHF-SSSGYYHCTADN 55 (65)
T ss_pred EEeccEEEEECCC-C--CC-CceEEeCCccCCC-C--------CceEEeeccC-CCCceEEEEeCC
Confidence 4679999999954 2 22 2999999977732 1 2234445555 889999999864
No 366
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=96.46 E-value=0.0062 Score=47.77 Aligned_cols=53 Identities=21% Similarity=0.465 Sum_probs=37.4
Q ss_pred EeCCCeEEEEEEecccCceEEEEEECCeeCCCCceEEeccceEEEccCccCCCeEEEEEEEeC
Q psy574 111 VSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENA 173 (977)
Q Consensus 111 v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~ 173 (977)
-..|.+|+|+|...+. .+.|++++..+... +..+.+.+-. +++|.|+|.+.+.
T Consensus 4 sisGTtVtlTCP~~~~---~i~W~~n~~~~~g~------~~~~~~~~~~-e~~G~Y~C~~~~~ 56 (65)
T cd07692 4 SISGTTVTVTCPLSGD---DIKWKKNDQVSQGS------DEKYLSLNHF-SSSGYYHCTADNA 56 (65)
T ss_pred EEeccEEEEECCCCCC---CceEEeCCccCCCC------CceEEeeccC-CCCceEEEEeCCC
Confidence 3579999999976422 29999999766542 2234444555 8899999999654
No 367
>PHA03271 envelope glycoprotein C; Provisional
Probab=96.45 E-value=0.36 Score=51.92 Aligned_cols=158 Identities=17% Similarity=0.256 Sum_probs=88.9
Q ss_pred EEEEcCCCCCCCeEEEEEEEecCcee-eeEeEEEEEE-cCCeEEeCCCceEEeCCCeEEEEEEeccc-Cc--eEEEEEEC
Q psy574 62 NLAIQDSRKTDDGRYQCVVKNVAGTR-ESTDAVLRVL-VKPYIIRGPKDTTVSASSIIVFECSVGGD-AV--LTVHWKRL 136 (977)
Q Consensus 62 ~L~I~~v~~~D~G~Y~C~a~n~~g~~-~s~~~~l~V~-~~P~~~~~p~~~~v~~G~~v~l~C~v~g~-p~--~~i~W~k~ 136 (977)
.|.|.++..+|+|.|+....+..... ..+.+.+.+. -+|.+...+. .+.+|+...-.|.+..+ |. ..+.|++|
T Consensus 208 ~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~RPPsVsV~a~--PVL~Ge~YkAtC~vAnYYPP~SvrlrWf~n 285 (490)
T PHA03271 208 GVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQRPASVDVLAP--PVLSGENYKASCIVRHFYPPGSVYVSWRQN 285 (490)
T ss_pred eEEEEEeecccceEEEEEecCCCCCccccceEEEEEEecCCCccccCC--ccccCCCceEEEEeeeecCCCceEEEEEeC
Confidence 49999999999997766665543221 1222334443 4555665554 37899999999999543 43 47999999
Q ss_pred CeeCCCCce---EE--e--cc-----ceEEEccCccCCCeEEEEEEEeCCe-e---EEEEEEEEEeeCCeEEecCCCcEE
Q psy574 137 GSAMPEDRM---SV--L--PS-----RSLQLSDVRLEDAGEYVCEAENAVG-K---ISASATLTVQMAPIVRERPSDLRL 200 (977)
Q Consensus 137 ~~~l~~~~~---~~--~--~~-----~~L~I~~v~~~D~G~Y~C~a~n~~g-~---~~~~~~L~V~~~p~~~~~p~~~~v 200 (977)
|..+..... .. . .+ ++|.+.+...+.-=..+|.+.=..+ . ..+.+.-.|..+|.+.+. .
T Consensus 286 G~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLRCeV~W~rd~v~s~rnAaatP~VY~~P~ISv~-----F 360 (490)
T PHA03271 286 GNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPPPKISCLVAWKQGDMISTTNATAIPTVYHHPRISLA-----F 360 (490)
T ss_pred CccccCccccceeEEEecCCCceeEEEEEEcccccCCCCCCceEEEEEccCCceeeeecccCCccccCCeEEEE-----E
Confidence 887643211 11 0 11 2333333322223378999873222 1 223333344455555433 3
Q ss_pred eeCCeEEEEEEEecCC-CCeEEEEEcCeee
Q psy574 201 EVGRDAVFLCGIEGSP-PPSTFWMLEGNRS 229 (977)
Q Consensus 201 ~~G~~v~L~C~~~g~p-~~~i~W~~~g~~~ 229 (977)
..|+- .|.+.-.| ...+.|+..+...
T Consensus 361 edG~A---VCtA~CVP~gV~lrWlVgD~p~ 387 (490)
T PHA03271 361 KDGYA---ICTIECVPSGITVRWLVHDEPQ 387 (490)
T ss_pred eCCEE---EEeccccCCCcEEEEEecCCCC
Confidence 33333 36665444 3478898877543
No 368
>PHA03271 envelope glycoprotein C; Provisional
Probab=96.44 E-value=0.3 Score=52.51 Aligned_cols=199 Identities=17% Similarity=0.222 Sum_probs=105.0
Q ss_pred eEEEccCccCCCeEEEEEEEeCCee--EEEEEEEEEe-eCCeEEecCCCcEEeeCCeEEEEEEEecCCCC---eEEEEEc
Q psy574 152 SLQLSDVRLEDAGEYVCEAENAVGK--ISASATLTVQ-MAPIVRERPSDLRLEVGRDAVFLCGIEGSPPP---STFWMLE 225 (977)
Q Consensus 152 ~L~I~~v~~~D~G~Y~C~a~n~~g~--~~~~~~L~V~-~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~---~i~W~~~ 225 (977)
.|.|.++...|+|.|+-...+.... ..+.+.+.+. .||.+.+.+ ..+..|+...-.|.+..+-++ .+.|++|
T Consensus 208 ~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~RPPsVsV~a--~PVL~Ge~YkAtC~vAnYYPP~SvrlrWf~n 285 (490)
T PHA03271 208 GVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQRPASVDVLA--PPVLSGENYKASCIVRHFYPPGSVYVSWRQN 285 (490)
T ss_pred eEEEEEeecccceEEEEEecCCCCCccccceEEEEEEecCCCccccC--CccccCCCceEEEEeeeecCCCceEEEEEeC
Confidence 6999999999999776555543333 3455555554 455555443 356899999999999775444 5889999
Q ss_pred CeeeeecCCCccccEEEEEccCC---ceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEEC-CCCCCCCeEEeCCC
Q psy574 226 GNRSLIYPGDRVDNIQAEITSDG---MNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSG-PDPNPPPVILFGPA 301 (977)
Q Consensus 226 g~~~~~~~~~~~~~~~~~~~~~g---~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~-~~~~~pp~i~~~p~ 301 (977)
|.++.... .....+-.....++ .++|.+.+...+..-..+ |.+.=..+....+. .-.. +.-.++|.+.
T Consensus 286 G~~V~~~~-~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLR-CeV~W~rd~v~s~r--nAaatP~VY~~P~IS---- 357 (490)
T PHA03271 286 GNIATPRK-DRDGSFWWFESGRGATLVSTITLGNSGIDPPPKIS-CLVAWKQGDMISTT--NATAIPTVYHHPRIS---- 357 (490)
T ss_pred CccccCcc-ccceeEEEecCCCceeEEEEEEcccccCCCCCCce-EEEEEccCCceeee--ecccCCccccCCeEE----
Confidence 98763221 11111111111122 134444443333344688 86643333222221 1111 1112233332
Q ss_pred ceeecCCCcEEEEEEEcc---CceEEEEECCEEcCCC--C----cEEEecCceEEEec-cCCCCC---eEEEEEEE
Q psy574 302 NQTLPLRSEARLRCQVRG---EGSVQWWRGEREVGSG--P----RVNVTGDGSLVLTD-VTKEDS---GEYTCVVK 364 (977)
Q Consensus 302 ~~~v~~g~~~~L~C~~~~---~p~i~W~~~g~~l~~~--~----~~~~~~~~sl~I~~-v~~~d~---G~Y~C~a~ 364 (977)
+.+..|+ ..|.+.- ...+.|..++...... + .......+...|.+ +..+|. -.|+|.+.
T Consensus 358 -v~FedG~---AVCtA~CVP~gV~lrWlVgD~p~pn~t~d~~itGvC~erPGlVNLrS~lPlSd~dgpveYTCrL~ 429 (490)
T PHA03271 358 -LAFKDGY---AICTIECVPSGITVRWLVHDEPQPNTTYDTVVTGLCRTIDRHRNLISRIPVQDNWQKTKYTCRLI 429 (490)
T ss_pred -EEEeCCE---EEEeccccCCCcEEEEEecCCCCCCcccccccccccCCCCCceeeeccCCchhcCCceeEEEEEe
Confidence 2233343 3466665 4579998877654322 1 01112234455555 333332 46999876
No 369
>smart00406 IGv Immunoglobulin V-Type.
Probab=96.43 E-value=0.009 Score=50.37 Aligned_cols=64 Identities=16% Similarity=0.200 Sum_probs=43.4
Q ss_pred eEEEEEEEecCCCC--eEEEEEcCe----eeeecCC---------CccccEEEEEcc-CCceEEEEeecccCCCCeEEEE
Q psy574 205 DAVFLCGIEGSPPP--STFWMLEGN----RSLIYPG---------DRVDNIQAEITS-DGMNLLKIQNVSRTAAPLIILC 268 (977)
Q Consensus 205 ~v~L~C~~~g~p~~--~i~W~~~g~----~~~~~~~---------~~~~~~~~~~~~-~g~s~L~I~~v~~~d~G~Y~~C 268 (977)
+++|.|.+.....+ .+.|++... .+..... ...+|+.+.... .+...|+|.+++.+|+|.|. |
T Consensus 1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~-C 79 (81)
T smart00406 1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYY-C 79 (81)
T ss_pred CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEE-E
Confidence 47899998765543 789998652 1111110 224566666543 45578999999999999999 8
Q ss_pred E
Q psy574 269 L 269 (977)
Q Consensus 269 ~ 269 (977)
.
T Consensus 80 ~ 80 (81)
T smart00406 80 A 80 (81)
T ss_pred c
Confidence 5
No 370
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=96.42 E-value=0.015 Score=51.77 Aligned_cols=70 Identities=16% Similarity=0.190 Sum_probs=49.0
Q ss_pred eecccceEEeCCCcEEEEEECCCCCC--C-CeEEEEe--CCEEee------------cCCCceEEEecC-----cEEEEc
Q psy574 9 RVQPKSQRVAAGDTALLECGPPRGHP--E-PTLVWKK--NGHPID------------FENSKRLRLVDG-----TNLAIQ 66 (977)
Q Consensus 9 ~~~p~~~~v~~G~~v~L~C~~~~g~P--~-~~v~W~k--~g~~l~------------~~~~~r~~~~~~-----g~L~I~ 66 (977)
.+++....+..|+.++|.|.+ +|.- . -.+.|.| +| .++ .....|+++..+ -+|.|.
T Consensus 2 l~~~~~~lv~p~~sv~LsC~~-sg~~~s~e~~~~wvRq~pg-~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~ 79 (115)
T cd05721 2 LVQQSPVLASSNGAASLVCEY-TYNGFSKEFRASLLKGADS-AVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQ 79 (115)
T ss_pred eeecCCeEEcCCCCEEEEEEe-cCCccccEEEEEEEEeCCC-CcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEc
Confidence 356778899999999999988 4432 2 4688988 33 211 112345544432 159999
Q ss_pred CCCCCCCeEEEEEE
Q psy574 67 DSRKTDDGRYQCVV 80 (977)
Q Consensus 67 ~v~~~D~G~Y~C~a 80 (977)
+++.+|++.|.|..
T Consensus 80 ~L~a~DTa~Y~Ca~ 93 (115)
T cd05721 80 NLRANQTDIYFCKI 93 (115)
T ss_pred CCCHHHCeEEEEEe
Confidence 99999999999975
No 371
>PF01108 Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH_E 1FG9_D 1JRH_I 3DGC_R 3DLQ_R 1LQS_R 1Y6M_R 1J7V_R ....
Probab=96.42 E-value=0.031 Score=50.16 Aligned_cols=81 Identities=19% Similarity=0.189 Sum_probs=56.3
Q ss_pred CCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCcceEEE--EecCCcCeEEecCCC--CCceEEEEE
Q psy574 641 PSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINM--TVSASTPTLLLTNLS--AGIRYSVSL 716 (977)
Q Consensus 641 P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~~~~~~--~~~~~~~~~~l~~L~--p~t~Y~~~V 716 (977)
...+|.+|++...+ ....|+|++++... .-..|.|+|+......+... -.....+++-|++.. +...|.++|
T Consensus 21 ~lp~P~nv~~~s~n-f~~iL~W~~~~~~~---~~~~ytVq~~~~~~~~W~~v~~C~~i~~~~Cdlt~~~~~~~~~Y~~rV 96 (107)
T PF01108_consen 21 SLPAPQNVTVDSVN-FKHILRWDPGPGSP---PNVTYTVQYKKYGSSSWKDVPGCQNITETSCDLTDETSDPSESYYARV 96 (107)
T ss_dssp SGSSCEEEEEEEET-TEEEEEEEESTTSS---STEEEEEEEEESSTSCEEEECCEEEESSSEEECTTCCTTTTSEEEEEE
T ss_pred cCCCCCeeEEEEEC-CceEEEeCCCCCCC---CCeEEEEEEEecCCcceeeccceecccccceeCcchhhcCcCCEEEEE
Confidence 33488999998876 56889999964222 33689999994344444443 234456888887754 788999999
Q ss_pred EEEcCCCcC
Q psy574 717 AATNRAGTG 725 (977)
Q Consensus 717 ~A~~~~G~g 725 (977)
+|......+
T Consensus 97 ~A~~~~~~S 105 (107)
T PF01108_consen 97 RAEVGNQTS 105 (107)
T ss_dssp EEEETTEEE
T ss_pred EEEeCCccC
Confidence 998765443
No 372
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=96.41 E-value=0.013 Score=51.91 Aligned_cols=72 Identities=14% Similarity=0.194 Sum_probs=45.3
Q ss_pred CcEEeeCCeEEEEEEEecC-C-CCeEEEEEcCeeeeecCC------CccccEEEEEccCCceEEEEeecccCCCCeEEEE
Q psy574 197 DLRLEVGRDAVFLCGIEGS-P-PPSTFWMLEGNRSLIYPG------DRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILC 268 (977)
Q Consensus 197 ~~~v~~G~~v~L~C~~~g~-p-~~~i~W~~~g~~~~~~~~------~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C 268 (977)
......++.++|.|.+.|. | ...|.|+++|..+..... ...+.|++. +.|.+..-...+...|+ |
T Consensus 11 ~~~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~------s~L~v~~~~w~~~~~~s-C 83 (100)
T cd07699 11 SEELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLS------SYLTLTKSDWNKHKVYT-C 83 (100)
T ss_pred HHHHccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEE------EEEEEcHHHhCCCCeEE-E
Confidence 3355567889999999885 4 347899999987631100 012222222 25666555555678999 9
Q ss_pred EEEcCCC
Q psy574 269 LGVNAAG 275 (977)
Q Consensus 269 ~a~n~~g 275 (977)
.+.....
T Consensus 84 ~V~H~~l 90 (100)
T cd07699 84 EVTHEGL 90 (100)
T ss_pred EEEecCC
Confidence 9987654
No 373
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.37 E-value=0.023 Score=49.70 Aligned_cols=75 Identities=11% Similarity=0.185 Sum_probs=45.6
Q ss_pred cCCCcEEeeCCeEEEEEEEecC-CCC--eEEEEEcCeeeeecC-----CCccccEEEEEccCCceEEEEeecccCCCCeE
Q psy574 194 RPSDLRLEVGRDAVFLCGIEGS-PPP--STFWMLEGNRSLIYP-----GDRVDNIQAEITSDGMNLLKIQNVSRTAAPLI 265 (977)
Q Consensus 194 ~p~~~~v~~G~~v~L~C~~~g~-p~~--~i~W~~~g~~~~~~~-----~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y 265 (977)
.|....+..|+.++|.|.+.|. -++ .+.|.|++....... ...++.|++.. .|.+..-...+.-.|
T Consensus 5 pPs~~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s------~l~v~~~~w~~g~~y 78 (96)
T cd07696 5 PPSPKQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTS------TLNVSTDDWISGDTF 78 (96)
T ss_pred CcCHHHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEE------EEEeCHHHccCCCcE
Confidence 4444566778999999999998 433 679999875332110 01122233222 555555444456689
Q ss_pred EEEEEEcCCC
Q psy574 266 ILCLGVNAAG 275 (977)
Q Consensus 266 ~~C~a~n~~g 275 (977)
+ |.+.....
T Consensus 79 s-C~V~H~~l 87 (96)
T cd07696 79 Q-CKVTHPDL 87 (96)
T ss_pred E-EEEECCCC
Confidence 9 99887654
No 374
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=96.36 E-value=0.021 Score=47.45 Aligned_cols=64 Identities=20% Similarity=0.405 Sum_probs=40.3
Q ss_pred EEEEEEEecC-CC-CeEEEEEcCeeeeecCCCccccEEEEEccCCc----eEEEEeecccCCCCeEEEEEEEcCC
Q psy574 206 AVFLCGIEGS-PP-PSTFWMLEGNRSLIYPGDRVDNIQAEITSDGM----NLLKIQNVSRTAAPLIILCLGVNAA 274 (977)
Q Consensus 206 v~L~C~~~g~-p~-~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~----s~L~I~~v~~~d~G~Y~~C~a~n~~ 274 (977)
++|.|.+.|+ |. ..+.|+|+|.++.. ...........+|. +.|.|.....++...|+ |.+.+..
T Consensus 2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~----~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~t-C~V~H~~ 71 (75)
T smart00407 2 ATLVCLVSGFYPPDITVTWLRNGQEVTS----GVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYT-CQVTHEG 71 (75)
T ss_pred eEEEEEEEeEeCCCCEEEEEECCEECCC----CEEECceEECCCCCEEEEEEEEEccccCCCCCEEE-EEEEEcC
Confidence 6899999986 44 48999999986321 11111122222332 35666666667888999 9987754
No 375
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=96.31 E-value=0.017 Score=50.24 Aligned_cols=66 Identities=15% Similarity=0.259 Sum_probs=42.8
Q ss_pred eCCCeEEEEEEeccc-Cc-eEEEEEECCeeCCCCce----EEeccc------eEEEccCccCCCeEEEEEEEeCCeeE
Q psy574 112 SASSIIVFECSVGGD-AV-LTVHWKRLGSAMPEDRM----SVLPSR------SLQLSDVRLEDAGEYVCEAENAVGKI 177 (977)
Q Consensus 112 ~~G~~v~l~C~v~g~-p~-~~i~W~k~~~~l~~~~~----~~~~~~------~L~I~~v~~~D~G~Y~C~a~n~~g~~ 177 (977)
..++.++|.|.+.|. |. ..|+|+|++..+..+.. ....++ .|.|..-...+...|+|.+.+.....
T Consensus 12 ~~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~~ 89 (94)
T cd05847 12 GTSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTTF 89 (94)
T ss_pred CCCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCeee
Confidence 356779999999774 54 68999999988643211 111222 34454443446689999999876543
No 376
>PHA02982 hypothetical protein; Provisional
Probab=96.26 E-value=0.036 Score=53.52 Aligned_cols=121 Identities=14% Similarity=0.281 Sum_probs=73.8
Q ss_pred cceEEeCCCcEEEEEECCCCCCCCeEEEEeCC-EEeecCC----------------CceEEEe---cCcEEEEcCCCCCC
Q psy574 13 KSQRVAAGDTALLECGPPRGHPEPTLVWKKNG-HPIDFEN----------------SKRLRLV---DGTNLAIQDSRKTD 72 (977)
Q Consensus 13 ~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g-~~l~~~~----------------~~r~~~~---~~g~L~I~~v~~~D 72 (977)
.++...+|+.|.|.|..+.+.--....|+++. ..|.... ...+.+. ..++|+|.++..+.
T Consensus 32 ~dv~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N 111 (251)
T PHA02982 32 ADVNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQN 111 (251)
T ss_pred hhhhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCccc
Confidence 35788899999999998666666788999854 2332110 1122222 13579999999999
Q ss_pred CeEEEEEEEecCceeeeEeEEEEEEcCCeEEeCCCceEEe-CCCeEEEEEEecccCceEEEEEECCee
Q psy574 73 DGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVS-ASSIIVFECSVGGDAVLTVHWKRLGSA 139 (977)
Q Consensus 73 ~G~Y~C~a~n~~g~~~s~~~~l~V~~~P~~~~~p~~~~v~-~G~~v~l~C~v~g~p~~~i~W~k~~~~ 139 (977)
.|-|+|++....+..+.-.-=|.|+..-.+.. .. -.....+.|-+...-.....|.-+|..
T Consensus 112 ~GCYtc~~ks~~~k~E~c~kCl~V~~~~V~~~------W~e~nNeT~V~CyVgS~~~dvp~W~V~GVv 173 (251)
T PHA02982 112 LGCFTCEAKDAEGKEETCEKCLEIQKEDILYV------VEEHNNETIITCFVGSKHGDVPRFIVAGIV 173 (251)
T ss_pred CCceEEEEecCCCchheeheeeeEecceEEEE------EEecCCeEEEEEEEEeccCCCccEEEeeEE
Confidence 99999999876655443333344432211111 11 223456789884332222388887764
No 377
>PF01108 Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH_E 1FG9_D 1JRH_I 3DGC_R 3DLQ_R 1LQS_R 1Y6M_R 1J7V_R ....
Probab=96.23 E-value=0.038 Score=49.62 Aligned_cols=78 Identities=9% Similarity=-0.066 Sum_probs=58.9
Q ss_pred EEEEEeeEeCCCeEEEEEEec-CCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCC--CCcEEEEEEEEeecc
Q psy574 547 IELTEVKPMTSTSVKLTWEIL-NTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLA--HYSRYEFFLVPFFGS 623 (977)
Q Consensus 547 ~~~l~~~~~~~tsv~lsW~~p-~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~--p~t~Y~~~V~a~n~~ 623 (977)
|.++++...+-. ..|.|+++ ....-..|.|+|+ ......|...........+++.|++.. +...|.++|+|..+.
T Consensus 25 P~nv~~~s~nf~-~iL~W~~~~~~~~~~~ytVq~~-~~~~~~W~~v~~C~~i~~~~Cdlt~~~~~~~~~Y~~rV~A~~~~ 102 (107)
T PF01108_consen 25 PQNVTVDSVNFK-HILRWDPGPGSPPNVTYTVQYK-KYGSSSWKDVPGCQNITETSCDLTDETSDPSESYYARVRAEVGN 102 (107)
T ss_dssp CEEEEEEEETTE-EEEEEEESTTSSSTEEEEEEEE-ESSTSCEEEECCEEEESSSEEECTTCCTTTTSEEEEEEEEEETT
T ss_pred CCeeEEEEECCc-eEEEeCCCCCCCCCeEEEEEEE-ecCCcceeeccceecccccceeCcchhhcCcCCEEEEEEEEeCC
Confidence 478888888655 79999996 4556678999999 434679988733333456889998844 789999999998765
Q ss_pred eeC
Q psy574 624 VDG 626 (977)
Q Consensus 624 g~g 626 (977)
..+
T Consensus 103 ~~S 105 (107)
T PF01108_consen 103 QTS 105 (107)
T ss_dssp EEE
T ss_pred ccC
Confidence 544
No 378
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.21 E-value=0.0066 Score=53.85 Aligned_cols=74 Identities=22% Similarity=0.352 Sum_probs=44.9
Q ss_pred cccceEEeCCCcEEEEEECCCCCCCC-eEEEEeCCEEeecCCCceE--EEe--cCc------EEEEcCCCCCCCeEEEEE
Q psy574 11 QPKSQRVAAGDTALLECGPPRGHPEP-TLVWKKNGHPIDFENSKRL--RLV--DGT------NLAIQDSRKTDDGRYQCV 79 (977)
Q Consensus 11 ~p~~~~v~~G~~v~L~C~~~~g~P~~-~v~W~k~g~~l~~~~~~r~--~~~--~~g------~L~I~~v~~~D~G~Y~C~ 79 (977)
.|....+..|+.++|.|.+...+|.. .|.|+|||+.+........ ... .+| .|.|..-...+...|+|+
T Consensus 7 ~p~~~~~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~ 86 (102)
T cd05768 7 PPPSEELSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCV 86 (102)
T ss_pred CcChHHhCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEE
Confidence 34344556688999999995556654 7899999998742211000 111 023 355533333455689999
Q ss_pred EEecC
Q psy574 80 VKNVA 84 (977)
Q Consensus 80 a~n~~ 84 (977)
+....
T Consensus 87 V~H~~ 91 (102)
T cd05768 87 VGHEA 91 (102)
T ss_pred eEeCC
Confidence 98753
No 379
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.20 E-value=0.0073 Score=52.83 Aligned_cols=75 Identities=13% Similarity=0.251 Sum_probs=44.1
Q ss_pred ecccceEEeCCCcEEEEEECCCC-CCC-CeEEEEeCCEEeecCCCceEEEecCcE------EEEcCCCCCCCeEEEEEEE
Q psy574 10 VQPKSQRVAAGDTALLECGPPRG-HPE-PTLVWKKNGHPIDFENSKRLRLVDGTN------LAIQDSRKTDDGRYQCVVK 81 (977)
Q Consensus 10 ~~p~~~~v~~G~~v~L~C~~~~g-~P~-~~v~W~k~g~~l~~~~~~r~~~~~~g~------L~I~~v~~~D~G~Y~C~a~ 81 (977)
..|....+..|+.++|.|.+... +|. ..|+|+|||...............+|+ |.+..-...+.-.|.|.+.
T Consensus 4 ~pPs~~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~ 83 (96)
T cd07696 4 LPPSPKQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVT 83 (96)
T ss_pred cCcCHHHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEE
Confidence 34555567789999999999555 354 589999987433111111112223443 4444333334458999998
Q ss_pred ecC
Q psy574 82 NVA 84 (977)
Q Consensus 82 n~~ 84 (977)
...
T Consensus 84 H~~ 86 (96)
T cd07696 84 HPD 86 (96)
T ss_pred CCC
Confidence 753
No 380
>KOG4228|consensus
Probab=96.19 E-value=0.018 Score=69.58 Aligned_cols=253 Identities=15% Similarity=0.106 Sum_probs=154.8
Q ss_pred EEEEEEEcCCCceEEEEEEEEECCCCCCCcccCCCCCCCCCCCCCCCeEEeeCCCceEEEEEcCCCCCCcccceEEEEEe
Q psy574 358 EYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMY 437 (977)
Q Consensus 358 ~Y~C~a~n~~G~~~~s~~l~v~~~~~~~~~~~~~~~~~~~p~~P~~~~v~~~~~~sv~lsW~~p~~~~~~~i~~Y~I~~~ 437 (977)
+|+|.+....|-......+.|.. .|..|..+.+......++...|..... ....|.+.++
T Consensus 1 ~Y~~~~~~~~~~~~~~~~v~v~~----------------~p~~~~~~~vt~~~~~~~~~~~~~~~t----~~~~y~v~~~ 60 (1087)
T KOG4228|consen 1 NYTCLARSGLGPGELITYVRVNG----------------GPPGPSTPNVTGSTATSWVQAELLGST----WPNYYQVIFK 60 (1087)
T ss_pred CeeeeecccCCCccceEEEEecC----------------CCCCCCCcccccccccceeehhhccCC----Chhhhheeee
Confidence 48999999999888888888873 344444555666667778888876544 4566777776
Q ss_pred ecCCCCCCCCCCCCcccEEEeceecCcCeEEEEccCCCCeEEEEEEEEcCCCCCCCCCCCceEEeeccccccccccCCcc
Q psy574 438 SRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKG 517 (977)
Q Consensus 438 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~G~s~~S~~s~~~~~~~~~p~~~p~~~~~~ 517 (977)
...... .... ......+....+.+...|.+ .++|..|.+.++.+....+......
T Consensus 61 ~~~s~~----------~~~~---~~~~~~~s~~~~~~~~~~~~--~evnt~~~a~~~~~~~~rt~~~~~~---------- 115 (1087)
T KOG4228|consen 61 ALSSGY----------GYID---VDLTTRLSYPCLSPPSFLEL--VEVNTIGRAPFQCPVAPRTGEQATL---------- 115 (1087)
T ss_pred EeccCc----------ceee---ccceeecccCCCCCcchhhh--hhcccccccccccccCCcccccccc----------
Confidence 554322 1111 11222355666777777777 7888888876664433222211100
Q ss_pred eeecCCCCCCCcchHHHHhhcccccCCceEEEEEeeEeCCCeEEEEEEecCCCccceEEEEEEecCCCCCceEEEEeecC
Q psy574 518 IFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPMTSTSVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVLHAG 597 (977)
Q Consensus 518 ~~~~~P~~~~~g~~~~~~~~~l~~~~~~~~~~l~~~~~~~tsv~lsW~~p~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~ 597 (977)
+ . .+...+.........++|..+. ..
T Consensus 116 -~--~------------------------~~~~~~~~~~a~~~~~~~~~~~------------------------~~--- 141 (1087)
T KOG4228|consen 116 -S--L------------------------QRDVQALMLSAATAHVNWRRFS------------------------AT--- 141 (1087)
T ss_pred -c--c------------------------ccchhhhhhhhhhhccCccccc------------------------cc---
Confidence 0 0 0111222233333444444330 00
Q ss_pred ccceEEECCCCCCcEEEEEEEEeecceeCCCCCceEEeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEE
Q psy574 598 EASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTY 677 (977)
Q Consensus 598 ~~~~~~i~~L~p~t~Y~~~V~a~n~~g~g~~s~~~~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y 677 (977)
+.+.+....+.++.+..+.+.|.+..|..++ ...+.+.+++.|.++. ...+..|
T Consensus 142 -----------------~~~~~~~~~~~~~~~t~i~i~~~~~~p~~~~-----~~~~~~~it~~w~~~~----~~~~~~y 195 (1087)
T KOG4228|consen 142 -----------------VGPLAIASPGLGPPSTYIQITTNANSPIQPG-----EEEEYTTITGSWSPPH----AVSLDTY 195 (1087)
T ss_pred -----------------ccccccCCcccCCCCceEEEeccCCCCCCCC-----cceEEEEEEecCCCCC----cccchhh
Confidence 0156666677777777889999999998665 4446678999999884 3567889
Q ss_pred EEEEEecCCcceEEEEecCCcCeEEecCCCCCceEEEEEEEEcCCCcCCCCCceEEeec
Q psy574 678 QIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLT 736 (977)
Q Consensus 678 ~v~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~~G~g~~S~~~~~~t~ 736 (977)
++.+...+.......... ...+....+|.|-..|.++..+....+.+.....+...+-
T Consensus 196 kl~~~~~d~~~~~~v~~~-~~~~~~t~~~~~~~~~~~~~ae~~~~~~~~~~a~i~~r~~ 253 (1087)
T KOG4228|consen 196 KLLHLDPDTGYEISVTLT-PPGSGGTGDLGPPSISRFKCAEPDRGPLGSSTAEIEARQL 253 (1087)
T ss_pred hhhhcCCcccceeeeecc-CCCCCcccCCCCcccccccccCccccccCCCCcceEEEeh
Confidence 998877544444443333 3344555678888889888888887777666666655443
No 381
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=96.17 E-value=0.019 Score=49.77 Aligned_cols=68 Identities=19% Similarity=0.351 Sum_probs=47.5
Q ss_pred eEEeCCCcEEE-EEECCCCCCCCeEEEEeCCEEee-----cCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecC
Q psy574 15 QRVAAGDTALL-ECGPPRGHPEPTLVWKKNGHPID-----FENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVA 84 (977)
Q Consensus 15 ~~v~~G~~v~L-~C~~~~g~P~~~v~W~k~g~~l~-----~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~ 84 (977)
+.+.+|+.+.+ .|.+..|.|.++|.|+.+..... ...++.++.. ..|.+...+..|.-.++|++.+..
T Consensus 11 ~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~~~~~~~~ngT~TV~--S~~~l~p~r~d~G~~vtC~V~H~a 84 (97)
T cd07704 11 LLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSESHSQEHPNGTTTVT--SEYIWVPSRHANGHPLTCVVSHPA 84 (97)
T ss_pred eEeecCcceeEEEEEccCCccCCEeEEeCCCCCccceeeecCCCCCEEEE--EEEEEEeCHHHCCcEEEEEEeCcc
Confidence 56789999999 99998999999999998632221 1112233322 356666666666679999998764
No 382
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=96.14 E-value=0.066 Score=46.58 Aligned_cols=66 Identities=17% Similarity=0.281 Sum_probs=40.1
Q ss_pred eeCCeEEEEEEEecCCCC--eEEEEEcCeeeeecCCCccccEEEEEccCCc----eEEEEeecccCCCCeEEEEEEEcCC
Q psy574 201 EVGRDAVFLCGIEGSPPP--STFWMLEGNRSLIYPGDRVDNIQAEITSDGM----NLLKIQNVSRTAAPLIILCLGVNAA 274 (977)
Q Consensus 201 ~~G~~v~L~C~~~g~p~~--~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~----s~L~I~~v~~~d~G~Y~~C~a~n~~ 274 (977)
..++..+|.|.+.|+-+. .+.|.++|..+... ........+.+++ +.|.+. ..+...|+ |.+....
T Consensus 13 ~~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~----~~~~~~~~~~Dgty~~~s~L~v~---~~~~~~yt-C~V~H~~ 84 (94)
T cd05767 13 ELGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDG----VSETRYYPRQDLSFQKFSYLNFT---PEEGDIYS-CIVEHWG 84 (94)
T ss_pred cCCCCeEEEEEEEEEECCcCEEEEEECCeEccCc----eEEeeeEeCCCCcEEEEEEEEEE---CCCCCeEE-EEEEeCC
Confidence 346668999999985443 67999999875311 1111222333342 244444 35667899 9987764
No 383
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=96.12 E-value=0.037 Score=48.16 Aligned_cols=60 Identities=27% Similarity=0.371 Sum_probs=39.2
Q ss_pred CCCcEEEEEEEcc----CceEEEEECCEEcCCC---CcEEEecCceEEEe---ccCCCCCeEEEEEEEcC
Q psy574 307 LRSEARLRCQVRG----EGSVQWWRGEREVGSG---PRVNVTGDGSLVLT---DVTKEDSGEYTCVVKSP 366 (977)
Q Consensus 307 ~g~~~~L~C~~~~----~p~i~W~~~g~~l~~~---~~~~~~~~~sl~I~---~v~~~d~G~Y~C~a~n~ 366 (977)
.++..+|.|.+.+ ...+.|.+||..+..+ .......++++.+. .+.+.+...|+|.+...
T Consensus 14 ~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~~~~~~~ytC~V~H~ 83 (94)
T cd05767 14 LGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFTPEEGDIYSCIVEHW 83 (94)
T ss_pred CCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEECCCCCeEEEEEEeC
Confidence 4566899999999 3468999999987553 12223344543332 23344566899998764
No 384
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=96.09 E-value=0.052 Score=47.34 Aligned_cols=70 Identities=10% Similarity=0.144 Sum_probs=42.7
Q ss_pred eCCeEEEEEEE-ecCCCCeEEEEEcCeee--eecCCCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCcee
Q psy574 202 VGRDAVFLCGI-EGSPPPSTFWMLEGNRS--LIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDL 278 (977)
Q Consensus 202 ~G~~v~L~C~~-~g~p~~~i~W~~~g~~~--~~~~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~ 278 (977)
......+.|.+ .|.|.+.|.|+++.... ........+.+.+. +.|.+.....+|.-.|+ |++.+..-...
T Consensus 14 ~~~~~va~C~s~~gkP~a~ItW~~~~~~~~~~~~~~~~~g~~tv~------S~l~~~p~~~d~G~~~t-C~v~h~~l~~~ 86 (95)
T cd05719 14 GEPVTVATCVSANGKPPATISWETTLGGEAETQSKENPNGTVTVT------SEYRLVPSREANGKELT-CVVSHPTLQEP 86 (95)
T ss_pred CCccEEEEEECCCCcCCCEEEEEeCCCCcceeEeecCCCCCEEEE------EEEEEecCHHHCCCEEE-EEEeCcccCCC
Confidence 34456789999 67899999999972111 00001112222222 37777766666777788 99999865443
No 385
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=96.06 E-value=0.046 Score=47.35 Aligned_cols=61 Identities=18% Similarity=0.326 Sum_probs=41.7
Q ss_pred cCCCcEEEEEEEcc----CceEEEEECCEEcCCC--CcEEEecCceEEEe---ccCCCCCeEEEEEEEcC
Q psy574 306 PLRSEARLRCQVRG----EGSVQWWRGEREVGSG--PRVNVTGDGSLVLT---DVTKEDSGEYTCVVKSP 366 (977)
Q Consensus 306 ~~g~~~~L~C~~~~----~p~i~W~~~g~~l~~~--~~~~~~~~~sl~I~---~v~~~d~G~Y~C~a~n~ 366 (977)
..|....|.|.+.+ ...+.|++||..+... ..+....++++.+. .+.+.+...|+|.+...
T Consensus 13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~ 82 (93)
T cd05770 13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIPKVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHN 82 (93)
T ss_pred cCCCceEEEEEEEEEeCCCCEEEEEECCEECCCcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEEC
Confidence 34667799999999 3468999999988622 12223445555443 34566777899998764
No 386
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=96.06 E-value=0.011 Score=53.39 Aligned_cols=80 Identities=19% Similarity=0.348 Sum_probs=49.6
Q ss_pred ccceec-ccceEEeCCCcEEEEEECCCCCCC-CeEEEEeCCEEeecCCC-ceEEEecC-c------EEEEcCCCCCC-Ce
Q psy574 6 EEFRVQ-PKSQRVAAGDTALLECGPPRGHPE-PTLVWKKNGHPIDFENS-KRLRLVDG-T------NLAIQDSRKTD-DG 74 (977)
Q Consensus 6 ~~~~~~-p~~~~v~~G~~v~L~C~~~~g~P~-~~v~W~k~g~~l~~~~~-~r~~~~~~-g------~L~I~~v~~~D-~G 74 (977)
|.+.+- |....+.+++.++|.|.+...+|. ..|.|+|||+.+..... ......++ | .|.|...+..| ..
T Consensus 3 P~V~v~~ps~~e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~ 82 (115)
T cd05769 3 PTVAIFPPSEAEIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRN 82 (115)
T ss_pred CEEEEECcChHHhccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCC
Confidence 344443 434455578889999999555777 48999999998743211 11122222 3 36665444444 45
Q ss_pred EEEEEEEecCc
Q psy574 75 RYQCVVKNVAG 85 (977)
Q Consensus 75 ~Y~C~a~n~~g 85 (977)
.|+|++.....
T Consensus 83 ~ytC~V~H~g~ 93 (115)
T cd05769 83 TFTCIVQFYGG 93 (115)
T ss_pred eEEEEEEEeCC
Confidence 99999987643
No 387
>KOG4367|consensus
Probab=96.02 E-value=0.0061 Score=64.49 Aligned_cols=82 Identities=20% Similarity=0.160 Sum_probs=67.2
Q ss_pred EeCCCeEEEEEEec--CCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeecceeCCCCCc
Q psy574 554 PMTSTSVKLTWEIL--NTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNL 631 (977)
Q Consensus 554 ~~~~tsv~lsW~~p--~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~g~~s~~ 631 (977)
....++++|+|+.| ......||.++....+ +.++....+ +..+.++|.+|.-++.|.-+|.++|+.|.++.|+.
T Consensus 449 ~t~nns~t~~wkqp~~~~~~~dg~~leld~g~-~g~frevy~---g~etmctvdglhfns~y~arvka~n~tg~s~ys~t 524 (699)
T KOG4367|consen 449 CTHNNSATLSWKQPPLSTVPADGYILELDDGN-GGQFREVYV---GKETMCTVDGLHFNSTYNARVKAFNKTGVSPYSKT 524 (699)
T ss_pred hccCCceEEEeecCCCCCCCCcceEEEeecCC-CCceeEEEe---cCceeEEecceecchhHHHHHHHhhccCCCcccce
Confidence 45678999999955 6678899999987654 344444333 67789999999999999999999999999999999
Q ss_pred eEEeccCC
Q psy574 632 RAVRTLEC 639 (977)
Q Consensus 632 ~~~~T~~~ 639 (977)
+..+|.+-
T Consensus 525 l~lqts~v 532 (699)
T KOG4367|consen 525 LVLQTSEV 532 (699)
T ss_pred eEeeecce
Confidence 98888764
No 388
>PF09294 Interfer-bind: Interferon-alpha/beta receptor, fibronectin type III; InterPro: IPR015373 Members of this family adopt a secondary structure consisting of seven beta-strands arranged in an immunoglobulin-like beta-sandwich, in a Greek-key topology. They are required for binding to interferon-alpha []. ; PDB: 1A21_A 3LQM_B 3ELA_T 1AHW_C 2A2Q_T 1TFH_B 1FAK_T 1WSS_T 1W2K_T 2FIR_T ....
Probab=96.01 E-value=0.042 Score=49.25 Aligned_cols=82 Identities=12% Similarity=0.059 Sum_probs=54.6
Q ss_pred EEeeEeCCCeEEEEEEecC-----CCc---------cceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEE
Q psy574 550 TEVKPMTSTSVKLTWEILN-----TDY---------IEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEF 615 (977)
Q Consensus 550 l~~~~~~~tsv~lsW~~p~-----~~~---------i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~ 615 (977)
+.+ ....++|.|.+.+|. +.. -..|.|.|++.+.. ...... ......+.|.+|.|++.|.|
T Consensus 8 v~v-~~~~~~l~V~i~~P~~~~~~~~~~~~l~~~~~~~~Y~v~~~~~~~~--~~~~~~--~~~~~~~~l~~L~p~t~YCv 82 (106)
T PF09294_consen 8 VNV-SSCGGSLHVTIKPPMTPLRAGGKNSSLRDIYPSLSYNVSYWKNGSN--EKKKEI--ETKNSSVTLSDLKPGTNYCV 82 (106)
T ss_dssp EEE-EEETTEEEEEEEESEEEEECSSSEEEHHHHHGG-EEEEEEEETTTS--CEEEEE--ESSSEEEEEES--TTSEEEE
T ss_pred EEE-EECCCEEEEEEECCCcccccCCCCCcHHHhCCCeEEEEEEEeCCCc--cceEEE--eecCCEEEEeCCCCCCCEEE
Confidence 555 778889999999993 111 13599999998854 112222 24556779999999999999
Q ss_pred EEEEee--cceeCCCCCceEEec
Q psy574 616 FLVPFF--GSVDGKPSNLRAVRT 636 (977)
Q Consensus 616 ~V~a~n--~~g~g~~s~~~~~~T 636 (977)
+|++.. ....|.+|....++|
T Consensus 83 ~V~~~~~~~~~~s~~S~~~C~~t 105 (106)
T PF09294_consen 83 SVQAFSPSQNKNSQPSEPQCITT 105 (106)
T ss_dssp EEEEEECSSTEEEEEBSEEEEE-
T ss_pred EEEEEeccCCCcCCCCCCEeEeC
Confidence 999933 244567777776665
No 389
>COG3401 Fibronectin type 3 domain-containing protein [General function prediction only]
Probab=95.99 E-value=0.59 Score=49.31 Aligned_cols=248 Identities=12% Similarity=0.060 Sum_probs=137.1
Q ss_pred CCceEEEEEcCCCCCCcccceEEEEEeecCCCCCCCCCCCCcccEEEec--eecCcCeEEEEccCCCCeEEEEEEEEcCC
Q psy574 411 ANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVA--TNVPSPILTVTNLTVGLTYTFLVRALNSH 488 (977)
Q Consensus 411 ~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~--~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~ 488 (977)
+..+.+-|.+..+ -+.-.|.|+....+.. ..... ...-.-.+.-.+|.++..|.+.|.|.+..
T Consensus 83 ~~~~~~~w~~~~d---~~~~~Y~i~~~~gD~~------------f~r~~~~~n~l~~~~i~s~~~~~~~~~~~Iia~~f~ 147 (343)
T COG3401 83 PKSVKVFWSPHPD---VSVGKYIIQRQNGDGK------------FLRTGLVKNRLFVEFIDSDLGHNEKYMELIIAADFQ 147 (343)
T ss_pred cceeeecccccCC---CCCCeEEEEEecCchh------------hhhhhHHHhccchhheecccccccceeeeEEeeccc
Confidence 4458899988765 4556799987544321 11111 11112234566999999999999998865
Q ss_pred CCCCCCCCCceEEeeccccccccccCCcceeecCCCCCCCcchHHHHhhcccccCCceEEEEEeeEeCCCeEEEEEEecC
Q psy574 489 GLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPMTSTSVKLTWEILN 568 (977)
Q Consensus 489 G~s~~S~~s~~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~g~~~~~~~~~l~~~~~~~~~~l~~~~~~~tsv~lsW~~p~ 568 (977)
+.-..| +..-...+.. .|..+.++++.....+.+.|+|+.+.
T Consensus 148 ~~~sfs-----f~gVE~~~~~---------------------------------~P~ei~~~~~~~d~~~~i~ls~dg~~ 189 (343)
T COG3401 148 MGKSFS-----FTGVEATPKA---------------------------------EPKEITNVRVSFDLGNNIELSEDGSE 189 (343)
T ss_pred ccceee-----eeeeeccccc---------------------------------CCceeeeeeeecCCCCcceeeccCcc
Confidence 543222 1111222211 12234677888888999999999873
Q ss_pred CCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEee-cceeCCCCCceEEeccCCCCCCCCce
Q psy574 569 TDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFF-GSVDGKPSNLRAVRTLECEPSGVPQL 647 (977)
Q Consensus 569 ~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n-~~g~g~~s~~~~~~T~~~~P~~~P~~ 647 (977)
... .|+|+=...+ ..++....... .+...-...+| +-.|...|.+.. ..+++..+...++....+.|. .|..
T Consensus 190 ~~~--yy~IY~~~~g-~e~~~~ia~t~-~n~y~d~~egl--ga~~~y~VTtVd~~~~es~lp~~~t~~~~~g~~e-~pt~ 262 (343)
T COG3401 190 AED--YYRIYASDSG-NEEYGFIAQTT-ENSYYDVKEGL--GAVEYYKVTTVDNTGFESDLPNEPTVGETGGRYE-VPTI 262 (343)
T ss_pred ccc--eEEEeccCCc-cccccceeecc-ccchhhhhhcc--CceeEEEEEEEcCCcceeccCCccccccccCCcc-cccC
Confidence 222 5666544433 23332222211 22222333344 666666777665 456677776555544334333 2211
Q ss_pred eEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCcceEEEEecCCcCeEEecCCCCCceEEEEEEEEcCCCcCC
Q psy574 648 TDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGP 726 (977)
Q Consensus 648 v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~~G~g~ 726 (977)
.. .....+.+.|.|+.-+ . -....|.+.-.+.+ ... .......+......+.++..|.+.|.|...+|...
T Consensus 263 ~g-~t~~~s~i~V~~E~~~--~--~~av~ytvyr~~~g-~~~--~~f~it~~d~~d~~~ltg~~~~y~v~~v~~~gls~ 333 (343)
T COG3401 263 PG-ETTEASFIGVAAEQNQ--L--RQAVTYTVYRVEDG-TPT--KFFTITETDGQDNDMLTGVEYRYEVVAVDKAGLSS 333 (343)
T ss_pred CC-ceeeeeeeeEEecccc--c--ceeeEEeeeeccCC-Ccc--eeeeeeeccccchhhccccceeEEEEEeccccccc
Confidence 11 2223455678887652 1 12345555432311 111 11222456667788899999999999999988654
No 390
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=95.96 E-value=0.091 Score=45.78 Aligned_cols=68 Identities=15% Similarity=0.260 Sum_probs=41.9
Q ss_pred eeCCeEEEEEEEecCCCC--eEEEEEcCeeeeecCCCccccEEEEEccCCc----eEEEEeecccCCCCeEEEEEEEcCC
Q psy574 201 EVGRDAVFLCGIEGSPPP--STFWMLEGNRSLIYPGDRVDNIQAEITSDGM----NLLKIQNVSRTAAPLIILCLGVNAA 274 (977)
Q Consensus 201 ~~G~~v~L~C~~~g~p~~--~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~----s~L~I~~v~~~d~G~Y~~C~a~n~~ 274 (977)
..|+.++|.|.+.|+-++ .+.|+++|..+... ........+.+|+ +.|.+ ...+...|+ |.+....
T Consensus 12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~----~~~~~~~~~~dgTy~~~s~L~~---~~~~~~~ys-C~V~H~~ 83 (94)
T cd05766 12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEG----VVSTELIPNGDWTYQILVMLET---TPSRGDTYT-CVVEHSS 83 (94)
T ss_pred cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCC----ceecceEECCCCcEEEEEEEEE---cCCCCCEEE-EEEEeCC
Confidence 368889999999985444 67999999875321 0111222222332 13333 345677899 9988765
Q ss_pred Cc
Q psy574 275 GS 276 (977)
Q Consensus 275 g~ 276 (977)
..
T Consensus 84 l~ 85 (94)
T cd05766 84 LQ 85 (94)
T ss_pred CC
Confidence 43
No 391
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=95.86 E-value=0.02 Score=48.74 Aligned_cols=63 Identities=21% Similarity=0.326 Sum_probs=42.5
Q ss_pred CCCcEEEEEECCCCCCCC-eEEEEeCCEEeecCCCceEEE-ecCc------EEEEcCCCCCCCeEEEEEEEecC
Q psy574 19 AGDTALLECGPPRGHPEP-TLVWKKNGHPIDFENSKRLRL-VDGT------NLAIQDSRKTDDGRYQCVVKNVA 84 (977)
Q Consensus 19 ~G~~v~L~C~~~~g~P~~-~v~W~k~g~~l~~~~~~r~~~-~~~g------~L~I~~v~~~D~G~Y~C~a~n~~ 84 (977)
.++.++|.|.+....|.. .|.|++||+.+.......... ..+| .|.+. ..+...|+|++.+..
T Consensus 7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~ 77 (83)
T PF07654_consen 7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHES 77 (83)
T ss_dssp STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETT
T ss_pred CCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECC
Confidence 389999999995556754 799999999884222111112 2344 35555 556669999998764
No 392
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=95.79 E-value=0.057 Score=48.85 Aligned_cols=77 Identities=18% Similarity=0.284 Sum_probs=47.2
Q ss_pred CCCcEEeeCCeEEEEEEEecCCCC--eEEEEEcCeeeeecCCC-------ccccEEEEEccCCceEEEEeecccCC-CCe
Q psy574 195 PSDLRLEVGRDAVFLCGIEGSPPP--STFWMLEGNRSLIYPGD-------RVDNIQAEITSDGMNLLKIQNVSRTA-APL 264 (977)
Q Consensus 195 p~~~~v~~G~~v~L~C~~~g~p~~--~i~W~~~g~~~~~~~~~-------~~~~~~~~~~~~g~s~L~I~~v~~~d-~G~ 264 (977)
|....+..+..++|.|.+.++-+. .+.|++||..+...... ..+.|+.. +.|.|...+..+ ...
T Consensus 10 ps~~e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~------S~L~v~~~~w~~~~~~ 83 (115)
T cd05769 10 PSEAEIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSIS------SRLRVSATEWFNPRNT 83 (115)
T ss_pred cChHHhccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEE------EEEEEChHHhccCCCe
Confidence 334445567789999999885444 78999999875321100 00222222 366666554433 678
Q ss_pred EEEEEEEcCCCcee
Q psy574 265 IILCLGVNAAGSDL 278 (977)
Q Consensus 265 Y~~C~a~n~~g~~~ 278 (977)
|+ |.+........
T Consensus 84 yt-C~V~H~g~~~~ 96 (115)
T cd05769 84 FT-CIVQFYGGTDT 96 (115)
T ss_pred EE-EEEEEeCCccc
Confidence 99 99988765554
No 393
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=95.75 E-value=0.016 Score=50.51 Aligned_cols=71 Identities=13% Similarity=0.307 Sum_probs=41.3
Q ss_pred ccceEEeCCCcEEEEEECCCCCCC-CeEEEEeCCEEeecCCCceE------EEecCcEEEEcCCCCCCCeEEEEEEEecC
Q psy574 12 PKSQRVAAGDTALLECGPPRGHPE-PTLVWKKNGHPIDFENSKRL------RLVDGTNLAIQDSRKTDDGRYQCVVKNVA 84 (977)
Q Consensus 12 p~~~~v~~G~~v~L~C~~~~g~P~-~~v~W~k~g~~l~~~~~~r~------~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~ 84 (977)
|....+..++.++|.|.+...+|. ..|.|+|||+.+..+..... +......|.|..-. ....|+|.+....
T Consensus 8 ps~~e~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~dty~~~S~L~vt~~~--~~~~ysC~V~H~g 85 (96)
T cd07697 8 PSKKEIEKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDNDVYSTTSWLTVTKDS--LGKKFRCIYKHEG 85 (96)
T ss_pred CCHHHHccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCCEEEEEEEEEECchh--CCCeEEEEEEECC
Confidence 333445557889999999555664 47899999998742211000 11111234444322 2336999998743
No 394
>PHA02633 hypothetical protein; Provisional
Probab=95.74 E-value=0.026 Score=43.34 Aligned_cols=41 Identities=15% Similarity=0.216 Sum_probs=35.1
Q ss_pred ccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEEeeCC
Q psy574 149 PSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAP 189 (977)
Q Consensus 149 ~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~~~p 189 (977)
....|.|-++..+|+|+|.|..+|..-...-++.|+|....
T Consensus 16 ~~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~~ 56 (63)
T PHA02633 16 NCNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLRI 56 (63)
T ss_pred ccccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeecc
Confidence 56789999999999999999999987778888888887443
No 395
>PHA02633 hypothetical protein; Provisional
Probab=95.73 E-value=0.029 Score=43.09 Aligned_cols=41 Identities=22% Similarity=0.377 Sum_probs=31.6
Q ss_pred cCcEEEEcCCCCCCCeEEEEEEEecCceeeeEeEEEEEEcCC
Q psy574 59 DGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKP 100 (977)
Q Consensus 59 ~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V~~~P 100 (977)
.+..|.|-++..+|+|.|.|..+|..-.. ...+.|+|....
T Consensus 16 ~~~nLwilpa~~sDSGiYiC~~rn~t~c~-~~si~l~V~~~~ 56 (63)
T PHA02633 16 NCNNMLILNPTQSDSGIYMCITKNETYSD-MMKFDLCICLRI 56 (63)
T ss_pred ccccEEEeccccccCcEEEEEEcCCCeeE-EEEEEEEEeecc
Confidence 45679999999999999999999765443 345677776543
No 396
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=95.73 E-value=0.021 Score=50.67 Aligned_cols=66 Identities=17% Similarity=0.359 Sum_probs=41.2
Q ss_pred eEEeCCCeEEEEEEeccc-Cc-eEEEEEECCeeCCCCceEE---e-c---cce------EEEccCccCCCeEEEEEEEeC
Q psy574 109 TTVSASSIIVFECSVGGD-AV-LTVHWKRLGSAMPEDRMSV---L-P---SRS------LQLSDVRLEDAGEYVCEAENA 173 (977)
Q Consensus 109 ~~v~~G~~v~l~C~v~g~-p~-~~i~W~k~~~~l~~~~~~~---~-~---~~~------L~I~~v~~~D~G~Y~C~a~n~ 173 (977)
..+..|+.++|.|.+.|. |. ..++|+|++..+....... . . +++ |.|..-...+...|+|.+...
T Consensus 11 ~~~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~ 90 (102)
T cd05768 11 EELSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHE 90 (102)
T ss_pred HHhCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeC
Confidence 334457889999999875 43 4689999998875322100 0 1 233 444333334567899999875
Q ss_pred C
Q psy574 174 V 174 (977)
Q Consensus 174 ~ 174 (977)
.
T Consensus 91 ~ 91 (102)
T cd05768 91 A 91 (102)
T ss_pred C
Confidence 4
No 397
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=95.72 E-value=0.026 Score=44.58 Aligned_cols=50 Identities=20% Similarity=0.502 Sum_probs=38.2
Q ss_pred CCCeEEEEEEecccCceEEEEEECCeeCCCCceEEeccceEEEccCccCCCeEEEEEEEe
Q psy574 113 ASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAEN 172 (977)
Q Consensus 113 ~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n 172 (977)
..+.|.|.|.+. ..|.|++ |..+... .+.+|.+-.+..+-.|.|+|.+.+
T Consensus 5 ~~~~V~L~C~~~----tsi~W~k-G~~~~~~-----~~~tlnLGs~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 5 SEGKVFLKCNGA----TNITWKK-GKEILEV-----SNTLLDLGSRINDPRGTYSCKESE 54 (69)
T ss_pred cCceEEEEecCC----CcEEEec-Ccccccc-----cccEEeccCcccCCCcceEecCcc
Confidence 356799999762 4699999 5544321 257788999999999999999876
No 398
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=95.72 E-value=0.033 Score=44.06 Aligned_cols=51 Identities=24% Similarity=0.460 Sum_probs=37.3
Q ss_pred eCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEe
Q psy574 18 AAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKN 82 (977)
Q Consensus 18 ~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n 82 (977)
...+.|.|+|.. ..+|.|+| |..+.... +.+|.+.....+=.|.|+|.+.+
T Consensus 4 e~~~~V~L~C~~-----~tsi~W~k-G~~~~~~~--------~~tlnLGs~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 4 ESEGKVFLKCNG-----ATNITWKK-GKEILEVS--------NTLLDLGSRINDPRGTYSCKESE 54 (69)
T ss_pred ecCceEEEEecC-----CCcEEEec-Cccccccc--------ccEEeccCcccCCCcceEecCcc
Confidence 345689999965 25699999 65552211 45677888888889999999875
No 399
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=95.53 E-value=0.13 Score=44.63 Aligned_cols=46 Identities=22% Similarity=0.356 Sum_probs=35.9
Q ss_pred CceEEEe-cCcEEEEcCCCCCCCeEEEEEEEecCceeeeEeEEEEEE
Q psy574 52 SKRLRLV-DGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVL 97 (977)
Q Consensus 52 ~~r~~~~-~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V~ 97 (977)
..|+.+. ++..|.|..+++.|+|.|.-++++..|......+.+.|.
T Consensus 61 n~r~~F~~enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsVF 107 (108)
T PF11465_consen 61 NNRFNFTSENLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSVF 107 (108)
T ss_dssp HHHEEEETTTTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEEE
T ss_pred cceEeeeccCceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEee
Confidence 3566655 467899999999999999999999999887777777664
No 400
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=95.50 E-value=0.039 Score=47.59 Aligned_cols=66 Identities=14% Similarity=0.154 Sum_probs=43.9
Q ss_pred EeCCCcEEEEEECCCCCCC--CeEEEEeCCEEeecCCCc-eEEE---e-cCcEEEEcCCCCCCCe-EEEEEEEec
Q psy574 17 VAAGDTALLECGPPRGHPE--PTLVWKKNGHPIDFENSK-RLRL---V-DGTNLAIQDSRKTDDG-RYQCVVKNV 83 (977)
Q Consensus 17 v~~G~~v~L~C~~~~g~P~--~~v~W~k~g~~l~~~~~~-r~~~---~-~~g~L~I~~v~~~D~G-~Y~C~a~n~ 83 (977)
+.+|+.+++.|.++...|. ..|.|+|++..+..+.-. .+.. . ....+.|.-. .+|.| .|.|.|.-.
T Consensus 12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftpt-reD~g~~fsC~A~L~ 85 (99)
T cd07689 12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTPT-IEDIGKVLVCRAKLH 85 (99)
T ss_pred ccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEecc-hhhCCcEEEEEEEEe
Confidence 5899999999999877887 689999987777432210 0000 0 1124555554 66666 999999754
No 401
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=95.43 E-value=0.15 Score=44.25 Aligned_cols=71 Identities=11% Similarity=0.134 Sum_probs=46.8
Q ss_pred EEeeCCeEEE-EEEE-ecCCCCeEEEEEcCeeee--ecCCCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCC
Q psy574 199 RLEVGRDAVF-LCGI-EGSPPPSTFWMLEGNRSL--IYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAA 274 (977)
Q Consensus 199 ~v~~G~~v~L-~C~~-~g~p~~~i~W~~~g~~~~--~~~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~ 274 (977)
.+.+|+.+.+ .|.+ .|.|.+.|.|+.+..... .......+.+++.. .|.+.....+|.-.++ |++.+..
T Consensus 12 ~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~~~~~~~~ngT~TV~S------~~~l~p~r~d~G~~vt-C~V~H~a 84 (97)
T cd07704 12 LIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSESHSQEHPNGTTTVTS------EYIWVPSRHANGHPLT-CVVSHPA 84 (97)
T ss_pred EeecCcceeEEEEEccCCccCCEeEEeCCCCCccceeeecCCCCCEEEEE------EEEEEeCHHHCCcEEE-EEEeCcc
Confidence 5678888888 8877 678999999998743211 00111233444443 6777666667777788 9998875
Q ss_pred Cc
Q psy574 275 GS 276 (977)
Q Consensus 275 g~ 276 (977)
-.
T Consensus 85 l~ 86 (97)
T cd07704 85 LQ 86 (97)
T ss_pred cC
Confidence 43
No 402
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=95.30 E-value=0.078 Score=46.24 Aligned_cols=68 Identities=21% Similarity=0.397 Sum_probs=40.7
Q ss_pred eCCCceeecCCCcEEEEEEEcc----CceEEEEECCEEcCCCC---cEEEecCceEEEe---ccCCC-CCeEEEEEEEcC
Q psy574 298 FGPANQTLPLRSEARLRCQVRG----EGSVQWWRGEREVGSGP---RVNVTGDGSLVLT---DVTKE-DSGEYTCVVKSP 366 (977)
Q Consensus 298 ~~p~~~~v~~g~~~~L~C~~~~----~p~i~W~~~g~~l~~~~---~~~~~~~~sl~I~---~v~~~-d~G~Y~C~a~n~ 366 (977)
..|....+..+..++|.|.+.+ ...+.|++||..+..+. ......+ ++.+. .+.+. ....|+|.+...
T Consensus 6 ~~ps~~e~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~d-ty~~~S~L~vt~~~~~~~ysC~V~H~ 84 (96)
T cd07697 6 FSPSKKEIEKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDND-VYSTTSWLTVTKDSLGKKFRCIYKHE 84 (96)
T ss_pred ECCCHHHHccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCC-EEEEEEEEEECchhCCCeEEEEEEEC
Confidence 3444455556778999999999 34689999999875431 1111222 43321 23333 233499998763
No 403
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=95.25 E-value=0.13 Score=44.76 Aligned_cols=70 Identities=10% Similarity=0.110 Sum_probs=41.7
Q ss_pred CeEEEEEEEe-cCCCCeEEEEEcCeeee--ecCCCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEE
Q psy574 204 RDAVFLCGIE-GSPPPSTFWMLEGNRSL--IYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLAR 280 (977)
Q Consensus 204 ~~v~L~C~~~-g~p~~~i~W~~~g~~~~--~~~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~ 280 (977)
....+.|.+. |.|.+.|.|+++..... .......+.+++. +.|.+.....+|...|+ |++.+..-.....
T Consensus 16 ~~~va~C~s~~gkPaa~IsW~~~~~g~~~~~~~~~~~gt~tv~------S~l~~~P~~~d~Gk~lt-C~v~h~al~~~~~ 88 (95)
T cd07703 16 PVPVAKCVSANGRPPARISWSSTLGGNANTTSKENGDGTVTVT------SEYSLVPTPEANGKEVT-CKVEHETLQEPQL 88 (95)
T ss_pred ccEEEEEEcCCCCCCcEEEEEcCCCCCeeEEEEeCCCCCEEEE------EEEEEecCHHHCCCEEE-EEEeCcccCCCeE
Confidence 4568899875 78899999999732110 0000111222222 36777666666666777 9999986544333
No 404
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=95.18 E-value=0.067 Score=48.82 Aligned_cols=74 Identities=18% Similarity=0.316 Sum_probs=47.4
Q ss_pred eCCCeEEEEEEecc-----cCceEEEEEECCeeCCC-----Cce--------EE----eccceEEEccCccCCCeEEEEE
Q psy574 112 SASSIIVFECSVGG-----DAVLTVHWKRLGSAMPE-----DRM--------SV----LPSRSLQLSDVRLEDAGEYVCE 169 (977)
Q Consensus 112 ~~G~~v~l~C~v~g-----~p~~~i~W~k~~~~l~~-----~~~--------~~----~~~~~L~I~~v~~~D~G~Y~C~ 169 (977)
.-+++|.|.|.+.. .+...|.|..++..+-. .+. .+ ..+.+|.+...+.- .|+|+|.
T Consensus 25 ~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTCe 103 (130)
T PF08204_consen 25 VCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTCE 103 (130)
T ss_dssp TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEEE
T ss_pred ecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEEE
Confidence 46889999999954 24567999999886521 111 01 02345888776554 8999999
Q ss_pred EEeCCeeEEEEEEEEEe
Q psy574 170 AENAVGKISASATLTVQ 186 (977)
Q Consensus 170 a~n~~g~~~~~~~L~V~ 186 (977)
+.......+..+.|...
T Consensus 104 Vt~~~~ege~~i~Lk~~ 120 (130)
T PF08204_consen 104 VTELSREGETTIELKYR 120 (130)
T ss_dssp EEETTEEEEEEEEEEE-
T ss_pred EEecCCCceEEEEEEEE
Confidence 99988888888888764
No 405
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=95.07 E-value=0.027 Score=51.37 Aligned_cols=78 Identities=21% Similarity=0.360 Sum_probs=41.9
Q ss_pred EeCCCcEEEEEECCC----CCCCCeEEEEeCCEEeecCCC--ceEE--------Ee----cCcEEEEcCCCCCCCeEEEE
Q psy574 17 VAAGDTALLECGPPR----GHPEPTLVWKKNGHPIDFENS--KRLR--------LV----DGTNLAIQDSRKTDDGRYQC 78 (977)
Q Consensus 17 v~~G~~v~L~C~~~~----g~P~~~v~W~k~g~~l~~~~~--~r~~--------~~----~~g~L~I~~v~~~D~G~Y~C 78 (977)
..=.++|.|+|.+.. ..+...|.|+.+|+.+..-++ .+.. +. .+.+|.+...+.- .|.|+|
T Consensus 24 t~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTC 102 (130)
T PF08204_consen 24 TVCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTC 102 (130)
T ss_dssp -TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEE
T ss_pred EecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEE
Confidence 445789999998821 124467999999998742211 1111 11 1234777664333 899999
Q ss_pred EEEecCceeeeEeEEEEE
Q psy574 79 VVKNVAGTRESTDAVLRV 96 (977)
Q Consensus 79 ~a~n~~g~~~s~~~~l~V 96 (977)
.+.....+.+ ..+.|..
T Consensus 103 eVt~~~~ege-~~i~Lk~ 119 (130)
T PF08204_consen 103 EVTELSREGE-TTIELKY 119 (130)
T ss_dssp EEEETTEEEE-EEEEEEE
T ss_pred EEEecCCCce-EEEEEEE
Confidence 9987655433 3344444
No 406
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=94.94 E-value=0.25 Score=41.85 Aligned_cols=67 Identities=18% Similarity=0.324 Sum_probs=41.5
Q ss_pred eCCeEEEEEEEecCCC-C-eEEEEEcCeeeeecCCCccccEEEEEccCCc----eEEEEeecccCCCCeEEEEEEEcCCC
Q psy574 202 VGRDAVFLCGIEGSPP-P-STFWMLEGNRSLIYPGDRVDNIQAEITSDGM----NLLKIQNVSRTAAPLIILCLGVNAAG 275 (977)
Q Consensus 202 ~G~~v~L~C~~~g~p~-~-~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~----s~L~I~~v~~~d~G~Y~~C~a~n~~g 275 (977)
.+..++|.|.+.++.+ . .|.|+++|..+.. ...........+|. +.|.+. ..+...|+ |.+.+...
T Consensus 7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~----~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ys-C~V~H~~l 78 (83)
T PF07654_consen 7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTE----GVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYS-CRVTHESL 78 (83)
T ss_dssp STSEEEEEEEEEEEBSSTEEEEEEETTEEETT----TEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEE-EEEEETTS
T ss_pred CCCCEEEEEEEEEEECCCcEEEEEeccceeee----eeeecccccccccceeeeEEEEec---CCCCCEEE-EEEEECCC
Confidence 3889999999988544 3 6899999987531 11111111122343 245555 56666899 99987654
Q ss_pred c
Q psy574 276 S 276 (977)
Q Consensus 276 ~ 276 (977)
.
T Consensus 79 ~ 79 (83)
T PF07654_consen 79 P 79 (83)
T ss_dssp S
T ss_pred C
Confidence 3
No 407
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=94.81 E-value=0.15 Score=44.54 Aligned_cols=61 Identities=16% Similarity=0.333 Sum_probs=37.7
Q ss_pred CCCeEEEEEEeccc-C-ceEEEEEECCeeCCCCce---EEec-cce------EEEccCccCCCeEEEEEEEeCC
Q psy574 113 ASSIIVFECSVGGD-A-VLTVHWKRLGSAMPEDRM---SVLP-SRS------LQLSDVRLEDAGEYVCEAENAV 174 (977)
Q Consensus 113 ~G~~v~l~C~v~g~-p-~~~i~W~k~~~~l~~~~~---~~~~-~~~------L~I~~v~~~D~G~Y~C~a~n~~ 174 (977)
.++.++|.|.+.|+ | ...++|+|||.. ..+.. .... +++ |.+..-.......|+|.+....
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~ 87 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS 87 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence 56679999999875 4 457899999987 32211 1111 333 3333322223567999998764
No 408
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=94.81 E-value=0.28 Score=42.79 Aligned_cols=65 Identities=12% Similarity=0.085 Sum_probs=39.7
Q ss_pred eCCeEEEEEEEecCCCC--eEEEEEcCeeeeecCCC------ccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcC
Q psy574 202 VGRDAVFLCGIEGSPPP--STFWMLEGNRSLIYPGD------RVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNA 273 (977)
Q Consensus 202 ~G~~v~L~C~~~g~p~~--~i~W~~~g~~~~~~~~~------~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~ 273 (977)
.++.++|.|.+.++-+. .+.|+++|.. ...... ..+.|+.. +.|++...+......|+ |.+...
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~------s~L~v~~~~w~~~~~yt-C~V~H~ 86 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTAS------SQLTVPASEWKGKESFY-CKVEHP 86 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEE------EEEEEeHHHcCCCCcEE-EEEEeC
Confidence 46679999999986443 6789999986 211000 02223222 25666554433466799 998876
Q ss_pred C
Q psy574 274 A 274 (977)
Q Consensus 274 ~ 274 (977)
.
T Consensus 87 ~ 87 (95)
T cd04985 87 S 87 (95)
T ss_pred C
Confidence 4
No 409
>PF09067 EpoR_lig-bind: Erythropoietin receptor, ligand binding; InterPro: IPR015152 Members of this entry include the growth hormone and erythropoietin receptors. The latter interacts with erythropoietin (EPO), with subsequent initiation of the downstream chain of events associated with binding of EPO to the receptor, including EPO-induced erythroblast proliferation and differentiation through induction of the JAK2/STAT5 signalling cascade. The domain adopts a secondary structure composed of a short amino-terminal helix, followed by two beta-sandwich regions []. ; PDB: 3NCB_B 3NCF_B 3NCE_B 3N0P_B 3NCC_B 1BP3_B 3N06_B 3MZG_B 3D48_R 1F6F_C ....
Probab=94.42 E-value=0.34 Score=42.87 Aligned_cols=78 Identities=5% Similarity=-0.054 Sum_probs=58.5
Q ss_pred eEEEEEeeEeCCCeEEEEEEec-CCCccceEEEEEEecCCCCCceEEEEeecCccce-----EEEC--CCCCCcEEEEEE
Q psy574 546 LIELTEVKPMTSTSVKLTWEIL-NTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASG-----FLVT--GLAHYSRYEFFL 617 (977)
Q Consensus 546 ~~~~l~~~~~~~tsv~lsW~~p-~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~-----~~i~--~L~p~t~Y~~~V 617 (977)
.++++.+...+...+++.|++. ....-+.|++.|...+ ..|............+ +.+. +..-++.|.|+|
T Consensus 10 ~P~~~~C~S~~~etftC~W~~g~~~~l~~~y~L~Y~~~~--~~~~eCp~~~~~~~ns~~~~~C~F~~~~t~lf~~y~i~V 87 (104)
T PF09067_consen 10 KPENLKCFSREMETFTCFWEPGSEGNLPTNYTLFYKKEG--EEWKECPDYSTSGPNSTVRHICYFPKSDTSLFVPYCIQV 87 (104)
T ss_dssp CCEEEEEEBSSSS-EEEEEEEESSSTSTCEEEEEEEETT--SEEEEESESSTTETTEEEEEEEEE-CCGCSSSSEEEEEE
T ss_pred CCccCccCCCCCCcEEEEeeCCCCCCCCCcEEEEEEeCC--CCCccCCCeEecCCCCceeEEEEcCCCCeEEEEEEEEEE
Confidence 3578999999999999999999 3333445999999876 5677666554333344 5555 789999999999
Q ss_pred EEeeccee
Q psy574 618 VPFFGSVD 625 (977)
Q Consensus 618 ~a~n~~g~ 625 (977)
.|.|..|.
T Consensus 88 ~a~~~~~~ 95 (104)
T PF09067_consen 88 EATNALGS 95 (104)
T ss_dssp EEEETTEE
T ss_pred EeccCCCc
Confidence 99988774
No 410
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=93.80 E-value=0.18 Score=44.06 Aligned_cols=76 Identities=24% Similarity=0.428 Sum_probs=45.0
Q ss_pred CCeEEeCCCceeecCCCcEEEEEEEcc-C-c---eEEEEECCEEcCCCCcEEEecCceEEEecc---CC---CCCeEEEE
Q psy574 293 PPVILFGPANQTLPLRSEARLRCQVRG-E-G---SVQWWRGEREVGSGPRVNVTGDGSLVLTDV---TK---EDSGEYTC 361 (977)
Q Consensus 293 pp~i~~~p~~~~v~~g~~~~L~C~~~~-~-p---~i~W~~~g~~l~~~~~~~~~~~~sl~I~~v---~~---~d~G~Y~C 361 (977)
|-+.+.+|.......+..++|.|.+.+ . | .+.|.++|..-..........++++.+... .. .....|+|
T Consensus 4 PsV~l~pPs~e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~~~~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC 83 (99)
T cd04986 4 PSLSLQRPALEDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGKEAVQTSAESDQCGCYSVSSVLPGCAEEWNKGEPFAC 83 (99)
T ss_pred CEEEEECcChHHhCcCCccEEEEEEeccCCCCCeEEEEEECCccCcEEcCcccCCCCCEEEEEEEEeCHHHhcCCCeEEE
Confidence 334455566666667889999999999 4 4 699999987511001111223454433321 11 22345999
Q ss_pred EEEcCCC
Q psy574 362 VVKSPHG 368 (977)
Q Consensus 362 ~a~n~~G 368 (977)
.+.....
T Consensus 84 ~V~H~~l 90 (99)
T cd04986 84 TVTHPEG 90 (99)
T ss_pred EEECCCc
Confidence 9987543
No 411
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=93.69 E-value=1.1 Score=38.98 Aligned_cols=92 Identities=17% Similarity=0.322 Sum_probs=52.6
Q ss_pred EEEEEcCCeEEeCCCceEEeCCCeEEEEEEecccCceE--EEEEECCeeCCC----CceEEe-ccceEEEccCccCCCeE
Q psy574 93 VLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLT--VHWKRLGSAMPE----DRMSVL-PSRSLQLSDVRLEDAGE 165 (977)
Q Consensus 93 ~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~--i~W~k~~~~l~~----~~~~~~-~~~~L~I~~v~~~D~G~ 165 (977)
.+-|...|..+.++ +..... ..++-.-.....+... ++|..+...... .++.+. .+-.|.|..++.+|+|.
T Consensus 8 VvgiSG~pl~LrP~-~~Qtk~-~sv~WK~~l~s~~~~~~IltW~n~~~~~~~~~~n~r~~F~~enlaLlIkaAq~qDSG~ 85 (108)
T PF11465_consen 8 VVGISGKPLQLRPS-NIQTKV-YSVQWKMQLPSQKKFEVILTWKNDSTPSYNSSFNNRFNFTSENLALLIKAAQPQDSGL 85 (108)
T ss_dssp EEEETTS-EEE--S-S---SS-EEEEEEEEETSSSEEE-EEEEETTEEEESSTTHHHHEEEETTTTEEEESS-SGGG-EE
T ss_pred eEEccCCEEEECCC-Ccccee-EEEEEEEEcccCCceEEEEEEcCCCcccccccccceEeeeccCceEEEeecCcccCce
Confidence 44555666666644 332222 2344444444444443 566655444322 345544 67799999999999999
Q ss_pred EEEEEEeCCeeE-EEEEEEEEe
Q psy574 166 YVCEAENAVGKI-SASATLTVQ 186 (977)
Q Consensus 166 Y~C~a~n~~g~~-~~~~~L~V~ 186 (977)
|..++++..|.. ...+.+.|.
T Consensus 86 Y~LEvT~~sG~V~~~~FqVsVF 107 (108)
T PF11465_consen 86 YCLEVTNESGKVCTKNFQVSVF 107 (108)
T ss_dssp EEEEEEETTSCEEEEEEEEEEE
T ss_pred EEEEEEcCCCcEEEEEEEEEee
Confidence 999999998874 456666664
No 412
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=93.62 E-value=0.093 Score=53.23 Aligned_cols=49 Identities=14% Similarity=0.405 Sum_probs=39.9
Q ss_pred CCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEe
Q psy574 33 HPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKN 82 (977)
Q Consensus 33 ~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n 82 (977)
...|.+.|.-.+..+ .....++.+.+.|+|++.+.+++++|.|+|...-
T Consensus 10 ~iDP~y~W~GP~g~~-l~gn~~~nIT~TG~L~~~~F~esmSG~YTCtLsY 58 (271)
T PF07354_consen 10 LIDPTYLWTGPNGKP-LSGNSYVNITETGKLMFKNFQESMSGSYTCTLSY 58 (271)
T ss_pred cCCCceEEECCCCcc-cCCCCeEEEccCceEEeeccccccCCceEEEEEE
Confidence 356889999854443 2456689999999999999999999999998764
No 413
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=93.50 E-value=0.28 Score=42.43 Aligned_cols=63 Identities=17% Similarity=0.298 Sum_probs=42.3
Q ss_pred EEeCCCeEEEEEEec-ccCc--eEEEEEECCeeCCCCceEE--------eccceEEEccCccCCCe-EEEEEEEeC
Q psy574 110 TVSASSIIVFECSVG-GDAV--LTVHWKRLGSAMPEDRMSV--------LPSRSLQLSDVRLEDAG-EYVCEAENA 173 (977)
Q Consensus 110 ~v~~G~~v~l~C~v~-g~p~--~~i~W~k~~~~l~~~~~~~--------~~~~~L~I~~v~~~D~G-~Y~C~a~n~ 173 (977)
.+.+|..+++.|.+. +.|. ..+.|+|....+....+.- .....+++... .+|.| .|+|+|.-.
T Consensus 11 ~l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftpt-reD~g~~fsC~A~L~ 85 (99)
T cd07689 11 PLEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTPT-IEDIGKVLVCRAKLH 85 (99)
T ss_pred cccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEecc-hhhCCcEEEEEEEEe
Confidence 358999999999994 4555 6899999877665432211 12234666554 56666 899999754
No 414
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=93.33 E-value=0.38 Score=42.94 Aligned_cols=75 Identities=11% Similarity=0.124 Sum_probs=49.0
Q ss_pred cCCCcEEeeCCeEEEEEEEecCCCC---eEEEEEcCeee---ee-------cCCCccccEEEEEcc-CCceEEEEeeccc
Q psy574 194 RPSDLRLEVGRDAVFLCGIEGSPPP---STFWMLEGNRS---LI-------YPGDRVDNIQAEITS-DGMNLLKIQNVSR 259 (977)
Q Consensus 194 ~p~~~~v~~G~~v~L~C~~~g~p~~---~i~W~~~g~~~---~~-------~~~~~~~~~~~~~~~-~g~s~L~I~~v~~ 259 (977)
.+....+..|..++|.|.+.|.... .+.|.|.-... .. ......+++....+. .+.-.|+|.+++.
T Consensus 4 ~~~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a 83 (115)
T cd05721 4 QQSPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRA 83 (115)
T ss_pred ecCCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCH
Confidence 3455678889999999999765443 57898853211 00 011124455544432 2346899999999
Q ss_pred CCCCeEEEEE
Q psy574 260 TAAPLIILCL 269 (977)
Q Consensus 260 ~d~G~Y~~C~ 269 (977)
+|.+.|. |.
T Consensus 84 ~DTa~Y~-Ca 92 (115)
T cd05721 84 NQTDIYF-CK 92 (115)
T ss_pred HHCeEEE-EE
Confidence 9999999 85
No 415
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=93.19 E-value=0.47 Score=41.51 Aligned_cols=74 Identities=18% Similarity=0.306 Sum_probs=44.5
Q ss_pred CCCcEEeeCCeEEEEEEEecCC-C--CeEEEEEcCeeeeec---CCCccccEEEEEccCCceEEEEeecccCCCCeEEEE
Q psy574 195 PSDLRLEVGRDAVFLCGIEGSP-P--PSTFWMLEGNRSLIY---PGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILC 268 (977)
Q Consensus 195 p~~~~v~~G~~v~L~C~~~g~p-~--~~i~W~~~g~~~~~~---~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C 268 (977)
|.......+..++|.|.+.++- + ..+.|.++|..-... ..+.++.|++. +.|.+..-.......|+ |
T Consensus 11 Ps~e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~~~~~t~~~~~~dgTys~~------S~L~v~~~~W~~g~~yt-C 83 (99)
T cd04986 11 PALEDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGKEAVQTSAESDQCGCYSVS------SVLPGCAEEWNKGEPFA-C 83 (99)
T ss_pred cChHHhCcCCccEEEEEEeccCCCCCeEEEEEECCccCcEEcCcccCCCCCEEEE------EEEEeCHHHhcCCCeEE-E
Confidence 4444555788999999998854 2 378999998641100 00112233333 26666644444556699 9
Q ss_pred EEEcCCC
Q psy574 269 LGVNAAG 275 (977)
Q Consensus 269 ~a~n~~g 275 (977)
.+.+...
T Consensus 84 ~V~H~~l 90 (99)
T cd04986 84 TVTHPEG 90 (99)
T ss_pred EEECCCc
Confidence 9887644
No 416
>KOG4806|consensus
Probab=93.15 E-value=4.9 Score=42.49 Aligned_cols=125 Identities=18% Similarity=0.143 Sum_probs=70.9
Q ss_pred CCCCCcEEEEEEEEeecceeCCCCCceEEec---cCCCCCCCCceeEEEEe--cCcEEEEEeeCCCCCCCCeeeeEEEEE
Q psy574 606 GLAHYSRYEFFLVPFFGSVDGKPSNLRAVRT---LECEPSGVPQLTDPVLL--NATSVLLKWKPPPVGTHNGVIRTYQII 680 (977)
Q Consensus 606 ~L~p~t~Y~~~V~a~n~~g~g~~s~~~~~~T---~~~~P~~~P~~v~~~~~--~~~sv~v~W~~p~~~~~ng~i~~Y~v~ 680 (977)
.+.++..|..++...|+.-. ..--.+...| ..+-|. -|++-++... .-++.+|.|...+.++ ..|-|+
T Consensus 290 vv~~~~~~~~rf~~~ndde~-~~~v~V~aSt~~t~~~~P~-LP~dTtVk~v~r~CSsAtIaW~gs~d~~-----~kyCIy 362 (454)
T KOG4806|consen 290 VVLPGERYLMRFEPSNDDEA-LQKVMVAASTEATFRDLPE-LPQDTTVKNVRRRCSSATIAWNGSPDEE-----LKYCIY 362 (454)
T ss_pred EecCCCceEEEEEecCCchh-hheeEeeeecccccCcCCC-CCCCceEeeeccccchheeeeccCcchh-----eeEEEE
Confidence 56788889999888875432 1111122222 223444 5566665543 4467999998775332 245554
Q ss_pred EEecCC-------------c---ceEEE-------------EecCCcCeEEecCCCCCceEEEEEEEEcCCCcCCCCCce
Q psy574 681 VGGGNN-------------S---ALINM-------------TVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPA 731 (977)
Q Consensus 681 ~~~~~~-------------~---~~~~~-------------~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~~G~g~~S~~~ 731 (977)
.+...+ + ..... ...-+...-+|.||.||.+|.+.|.|.-..|...+=+.+
T Consensus 363 ~~~~~~~e~~v~~~~N~C~g~~~~~~s~~v~c~y~hs~~~q~~~~~i~teTI~gL~PgssYlldv~a~~~~g~~lpyqa~ 442 (454)
T KOG4806|consen 363 VFNLPQRERSVVDFTNYCMGFVPKRVSQYVYCEYMHSRERQQSPDNIETETILGLMPGSSYLLDVTANLSMGKPLPYQAL 442 (454)
T ss_pred EecccchhhhhhhhhccccCccccceeEEEeEEEecChhhhcchhhhhhhhhcccccCceEEEEEEEcccCCccccceeE
Confidence 433110 0 00000 000112234788999999999999998877776666666
Q ss_pred EEeecC
Q psy574 732 LLSLTS 737 (977)
Q Consensus 732 ~~~t~~ 737 (977)
.+.|..
T Consensus 443 ~v~t~~ 448 (454)
T KOG4806|consen 443 TVHTAS 448 (454)
T ss_pred EEEech
Confidence 666644
No 417
>PHA03042 CD47-like protein; Provisional
Probab=93.04 E-value=0.27 Score=50.14 Aligned_cols=71 Identities=23% Similarity=0.392 Sum_probs=47.5
Q ss_pred eCCCeEEEEEEeccc-----CceEEEEEECCeeCCCCceEEeccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy574 112 SASSIIVFECSVGGD-----AVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTV 185 (977)
Q Consensus 112 ~~G~~v~l~C~v~g~-----p~~~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V 185 (977)
.-++++.+.|.+... ....+.|..++..+-..+.. +..+|.+.... .=.|+|+|+|.+........++|+-
T Consensus 29 ~CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t--n~aSL~~~f~~-~l~GNYTCEv~~l~n~gk~~IeLk~ 104 (286)
T PHA03042 29 TCNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT--NTSSLKFNFSK-NLSGNYTCEAINKFNKIKNTIELQY 104 (286)
T ss_pred ecCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC--cceEEEEeccc-cCCCceeEEEeecccCccEEEEEEE
Confidence 458899999998532 35679999999877432211 33557665543 3379999999986655555555543
No 418
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=92.99 E-value=16 Score=39.66 Aligned_cols=107 Identities=11% Similarity=0.275 Sum_probs=67.1
Q ss_pred ceeecCCCcEEEEEEEcc-----CceEEEEECCEEcCC-----------------CCcEEEe---------cCceEEEec
Q psy574 302 NQTLPLRSEARLRCQVRG-----EGSVQWWRGEREVGS-----------------GPRVNVT---------GDGSLVLTD 350 (977)
Q Consensus 302 ~~~v~~g~~~~L~C~~~~-----~p~i~W~~~g~~l~~-----------------~~~~~~~---------~~~sl~I~~ 350 (977)
+..+..|..+.|.|...- ...+.|..-|-++.. ...+.+. ..++|+|..
T Consensus 273 ~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIkk 352 (500)
T PHA02914 273 EVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIKK 352 (500)
T ss_pred eeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEeee
Confidence 455778999999999886 345889876544321 1222222 234799999
Q ss_pred cCCCCCeEEEEEEEcCCCceEEEEEEEEECCCCCCCcccCCCCCCCCCCCCCCCeEEeeCCCceEEEEEcCCCCCCcccc
Q psy574 351 VTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLL 430 (977)
Q Consensus 351 v~~~d~G~Y~C~a~n~~G~~~~s~~l~v~~~~~~~~~~~~~~~~~~~p~~P~~~~v~~~~~~sv~lsW~~p~~~~~~~i~ 430 (977)
+.....|-|.|+|....-..+..--|.| .+.|.+.|..... ....+.
T Consensus 353 a~I~N~GCY~~~a~~g~~~~ec~~Cl~V--------------------------------~d~V~f~W~~e~~-n~T~V~ 399 (500)
T PHA02914 353 AHINNAGCYEAQAFMGKFKEECRHCFKV--------------------------------ADHVFFKWNTEGD-NETKVA 399 (500)
T ss_pred EEEEcCCceEEEEecCcchhhhhhheEe--------------------------------ccEEEEEEEeccC-ceEEEE
Confidence 9999999999999875433322222222 2478999986544 233445
Q ss_pred eEEEEEeecCC
Q psy574 431 GYQVEMYSRPL 441 (977)
Q Consensus 431 ~Y~I~~~~~~~ 441 (977)
-|..++.....
T Consensus 400 Cyv~sy~~kp~ 410 (500)
T PHA02914 400 CYAAQYDMQPF 410 (500)
T ss_pred EEEEecccCCc
Confidence 56666644433
No 419
>COG3401 Fibronectin type 3 domain-containing protein [General function prediction only]
Probab=92.82 E-value=2.5 Score=44.78 Aligned_cols=164 Identities=12% Similarity=0.108 Sum_probs=96.5
Q ss_pred CCCeEEEEEEecCCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeecceeCCCCCceEEe
Q psy574 556 TSTSVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVR 635 (977)
Q Consensus 556 ~~tsv~lsW~~p~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~g~~s~~~~~~ 635 (977)
-+..+.+-|.+-+.-....|.|+-...+. . ..........-...+.-++|.++..|...|.+.+..+.-..+ +.
T Consensus 82 ~~~~~~~~w~~~~d~~~~~Y~i~~~~gD~-~-f~r~~~~~n~l~~~~i~s~~~~~~~~~~~Iia~~f~~~~sfs----f~ 155 (343)
T COG3401 82 RPKSVKVFWSPHPDVSVGKYIIQRQNGDG-K-FLRTGLVKNRLFVEFIDSDLGHNEKYMELIIAADFQMGKSFS----FT 155 (343)
T ss_pred CcceeeecccccCCCCCCeEEEEEecCch-h-hhhhhHHHhccchhheecccccccceeeeEEeecccccceee----ee
Confidence 34569999999877777889998776653 1 222111111223455666899999999999998765543333 22
Q ss_pred ccCCCCCCCC---ceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCcceEEEEecCCcCeE--EecCCCCCc
Q psy574 636 TLECEPSGVP---QLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTL--LLTNLSAGI 710 (977)
Q Consensus 636 T~~~~P~~~P---~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~--~l~~L~p~t 710 (977)
-.+..|...| .++++.....+.+.|+|+.++ ..+ .|+|+-.... ............+++ ...+| |.
T Consensus 156 gVE~~~~~~P~ei~~~~~~~d~~~~i~ls~dg~~--~~~----yy~IY~~~~g-~e~~~~ia~t~~n~y~d~~egl--ga 226 (343)
T COG3401 156 GVEATPKAEPKEITNVRVSFDLGNNIELSEDGSE--AED----YYRIYASDSG-NEEYGFIAQTTENSYYDVKEGL--GA 226 (343)
T ss_pred eeecccccCCceeeeeeeecCCCCcceeeccCcc--ccc----eEEEeccCCc-cccccceeeccccchhhhhhcc--Cc
Confidence 2233332233 345555556678999999983 333 7777544422 222222222233333 34455 77
Q ss_pred eEEEEEEEEc-CCCcCCCCCceEEe
Q psy574 711 RYSVSLAATN-RAGTGPYSRPALLS 734 (977)
Q Consensus 711 ~Y~~~V~A~~-~~G~g~~S~~~~~~ 734 (977)
.|...|.++- ..+.+..+.+....
T Consensus 227 ~~~y~VTtVd~~~~es~lp~~~t~~ 251 (343)
T COG3401 227 VEYYKVTTVDNTGFESDLPNEPTVG 251 (343)
T ss_pred eeEEEEEEEcCCcceeccCCccccc
Confidence 7888888876 45567777765543
No 420
>KOG4597|consensus
Probab=92.53 E-value=0.18 Score=55.03 Aligned_cols=93 Identities=15% Similarity=0.116 Sum_probs=71.9
Q ss_pred eEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEE---cCeeeeecCCCccccEEEEEccCCceEEEEeecccCCCCeEE
Q psy574 190 IVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWML---EGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLII 266 (977)
Q Consensus 190 ~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~---~g~~~~~~~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~ 266 (977)
.+..-|....+..+++++++|.+.|.+.+.|.|.+ ++..+.+.+....++..+.. +..|.|-+....|+|.|+
T Consensus 198 ~l~~cpa~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vts----tcql~ic~ewq~~a~w~t 273 (560)
T KOG4597|consen 198 ALVDCPAEWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTS----TCQLVICNEWQADAGWYT 273 (560)
T ss_pred ccccCcchhhcccchhhcccccccCCcCceeeeehhhccccceeecCccccCCcceee----eeeEEEcchhhcCCCcee
Confidence 34444566688899999999999999999999986 45555555555555544443 238999999999999999
Q ss_pred EEEEEcCCCceeEEEEEEEEC
Q psy574 267 LCLGVNAAGSDLARASLTVSG 287 (977)
Q Consensus 267 ~C~a~n~~g~~~~~~~l~V~~ 287 (977)
|.+.+.+|.....+.+.+.-
T Consensus 274 -Cs~rcg~g~~~rdv~c~s~~ 293 (560)
T KOG4597|consen 274 -CSARCGAGFLRRDVPCSSVK 293 (560)
T ss_pred -eccccccceeeccceeeeec
Confidence 99999999888777666543
No 421
>KOG3632|consensus
Probab=91.82 E-value=1.2 Score=53.21 Aligned_cols=174 Identities=14% Similarity=0.121 Sum_probs=99.8
Q ss_pred CCCCCCCCCeEEeeCCCceEEEEEcCCCCCCcccceEEEEEeecCCCCCCCCCCCCcccEEEeceecCcCeEEEEccCCC
Q psy574 396 TYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVG 475 (977)
Q Consensus 396 ~~p~~P~~~~v~~~~~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~i~~L~p~ 475 (977)
..+..|.++++-+++.++..++|-+-.. +- -++.|....... ........+++.+|.|+
T Consensus 670 ~a~vvpsqlrv~n~tqtSa~itwvp~ns--n~----~Hviyln~eE~~---------------ps~a~~y~ytf~~lrpg 728 (1335)
T KOG3632|consen 670 AAPVVPSQLRVWNATQTSAMITWVPFNS--NF----LHVIYLNAEEPR---------------PSVAEMYNYTFMRLRPG 728 (1335)
T ss_pred cccccchhhhhhhhhchhhheeeeecCC--Cc----ceeeecCCccCC---------------CchhhhhHHHHhccCCC
Confidence 4578899999999999999999987655 11 123332211110 01222345678899999
Q ss_pred CeEEEEEEEEcC-CC-----CCCCCCCCceEEeeccccccccccCCcceeecCCCCCCCcchHHHHhhcccccCCceEEE
Q psy574 476 LTYTFLVRALNS-HG-----LSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIEL 549 (977)
Q Consensus 476 t~Y~~~V~a~n~-~G-----~s~~S~~s~~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~g~~~~~~~~~l~~~~~~~~~~ 549 (977)
+.|..+|-+.-. .+ .-.++....++. ...|..|++-++.+
T Consensus 729 t~y~a~vea~~p~q~pwdl~~v~~etr~atv~----------------------------------f~tLpAGppappld 774 (1335)
T KOG3632|consen 729 TDYWASVEAALPRQEPWDLRMVPMETRQATVL----------------------------------FRTLPAGPPAPPLD 774 (1335)
T ss_pred CccceecccccCcCCCcccccchhhhhcccee----------------------------------eecccCCCCCCchh
Confidence 999999977543 11 111111111111 11222233444455
Q ss_pred EEeeE-eCCCeEEEEEEec--------CCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCC-CcEEEEEEEE
Q psy574 550 TEVKP-MTSTSVKLTWEIL--------NTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAH-YSRYEFFLVP 619 (977)
Q Consensus 550 l~~~~-~~~tsv~lsW~~p--------~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p-~t~Y~~~V~a 619 (977)
+.+.. .+++.+.++|.|| ++-.+++|.|+-.... ...........+.+.+..|.- ...=.|.|+.
T Consensus 775 V~vE~g~spg~l~vswrPptldsag~sngv~vtgYavyadgqk-----v~Evafptagst~VelsQlq~~l~~~~V~vRt 849 (1335)
T KOG3632|consen 775 VKVETGGSPGRLEVSWRPPTLDSAGCSNGVAVTGYAVYADGQK-----VEEVAFPTAGSTKVELSQLQDGLYHGAVGVRT 849 (1335)
T ss_pred eeeecCCCCceeeeeccCceeccccccCceeeeeeeeeeCCce-----eeeeecccCCceEEEeeeehhhheecceeEEe
Confidence 66654 6788999999999 4556789999864221 111111224445566666665 5555677777
Q ss_pred eecceeCCCC
Q psy574 620 FFGSVDGKPS 629 (977)
Q Consensus 620 ~n~~g~g~~s 629 (977)
..--|++..|
T Consensus 850 ms~~gesvds 859 (1335)
T KOG3632|consen 850 MSVPGESVDS 859 (1335)
T ss_pred cccCcccccc
Confidence 6666665443
No 422
>PHA02982 hypothetical protein; Provisional
Probab=91.28 E-value=2.1 Score=41.84 Aligned_cols=116 Identities=18% Similarity=0.346 Sum_probs=72.9
Q ss_pred CCceEEeCCCeEEEEEEe-cccCceEEEEEECCeeCCC--------------------CceEEe---ccceEEEccCccC
Q psy574 106 PKDTTVSASSIIVFECSV-GGDAVLTVHWKRLGSAMPE--------------------DRMSVL---PSRSLQLSDVRLE 161 (977)
Q Consensus 106 p~~~~v~~G~~v~l~C~v-~g~p~~~i~W~k~~~~l~~--------------------~~~~~~---~~~~L~I~~v~~~ 161 (977)
..++....++.|.|.|.. .++......|+++....-. ..+... ..++|+|.++..+
T Consensus 31 ~~dv~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~ 110 (251)
T PHA02982 31 TADVNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQ 110 (251)
T ss_pred hhhhhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcc
Confidence 345566789999999997 4455667899987543211 011111 4578999999999
Q ss_pred CCeEEEEEEEeCCeeEE-EEEEEEEeeCCeEEecCCCcEEeeC-CeEEEEEEEecCCCCeEEEEEcCe
Q psy574 162 DAGEYVCEAENAVGKIS-ASATLTVQMAPIVRERPSDLRLEVG-RDAVFLCGIEGSPPPSTFWMLEGN 227 (977)
Q Consensus 162 D~G~Y~C~a~n~~g~~~-~~~~L~V~~~p~~~~~p~~~~v~~G-~~v~L~C~~~g~p~~~i~W~~~g~ 227 (977)
..|=|+|++....+..+ ..--|.|+..-.+. ...++ ..-.+.|-+-+...+-..|..+|.
T Consensus 111 N~GCYtc~~ks~~~k~E~c~kCl~V~~~~V~~------~W~e~nNeT~V~CyVgS~~~dvp~W~V~GV 172 (251)
T PHA02982 111 NLGCFTCEAKDAEGKEETCEKCLEIQKEDILY------VVEEHNNETIITCFVGSKHGDVPRFIVAGI 172 (251)
T ss_pred cCCceEEEEecCCCchheeheeeeEecceEEE------EEEecCCeEEEEEEEEeccCCCccEEEeeE
Confidence 99999999987655432 24445553211111 12223 334678988666555448988875
No 423
>KOG4597|consensus
Probab=90.95 E-value=0.28 Score=53.65 Aligned_cols=85 Identities=18% Similarity=0.245 Sum_probs=67.1
Q ss_pred EEeCCCceEEeCCCeEEEEEEecccCceEEEEEEC---CeeC--C----CCceEEeccceEEEccCccCCCeEEEEEEEe
Q psy574 102 IIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRL---GSAM--P----EDRMSVLPSRSLQLSDVRLEDAGEYVCEAEN 172 (977)
Q Consensus 102 ~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~---~~~l--~----~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n 172 (977)
+..-|....+..+++..++|-+.|.+.+.|.|.+. ...+ . .++..+.....|.|-+....|+|.|+|.+.+
T Consensus 199 l~~cpa~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~rc 278 (560)
T KOG4597|consen 199 LVDCPAEWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSARC 278 (560)
T ss_pred cccCcchhhcccchhhcccccccCCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeecccc
Confidence 44456667888999999999999999999999874 2221 1 1233334556799999999999999999999
Q ss_pred CCeeEEEEEEEEEe
Q psy574 173 AVGKISASATLTVQ 186 (977)
Q Consensus 173 ~~g~~~~~~~L~V~ 186 (977)
..|...+.+.+.+.
T Consensus 279 g~g~~~rdv~c~s~ 292 (560)
T KOG4597|consen 279 GAGFLRRDVPCSSV 292 (560)
T ss_pred ccceeeccceeeee
Confidence 99998888888776
No 424
>PHA03282 envelope glycoprotein E; Provisional
Probab=90.74 E-value=9.3 Score=42.29 Aligned_cols=45 Identities=27% Similarity=0.375 Sum_probs=31.2
Q ss_pred CceEEEecCcEEEEcCCCCCCCeEEEEEEEecCc-eeeeEeEEEEEE
Q psy574 52 SKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAG-TRESTDAVLRVL 97 (977)
Q Consensus 52 ~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g-~~~s~~~~l~V~ 97 (977)
..|+... |++|.|.+++.+|+|.|+-.+..... ......+.|.|.
T Consensus 116 ~~rvs~~-n~tl~l~~a~~~DsG~Y~L~~~~~~~~~~~~~~v~l~V~ 161 (540)
T PHA03282 116 PPRVAVV-NGTLVLREARETDSGMYVLSVSRAPNSTAARAVVFLVVG 161 (540)
T ss_pred CcceeEe-cceEEEeeccccCCceEEEEecCCCCchhheEEEEEEec
Confidence 3466666 77899999999999999998754322 223344556664
No 425
>KOG4152|consensus
Probab=90.59 E-value=0.75 Score=50.74 Aligned_cols=34 Identities=29% Similarity=0.386 Sum_probs=28.6
Q ss_pred EEccCCCCeEEEEEEEEcCCCCCCCCCCCceEEe
Q psy574 469 VTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVL 502 (977)
Q Consensus 469 i~~L~p~t~Y~~~V~a~n~~G~s~~S~~s~~~~~ 502 (977)
-.+|.+++.|+|+|.|.|..|.+++|......+-
T Consensus 651 k~~lv~Gq~yrfrV~aIng~G~gp~s~i~~~kTc 684 (830)
T KOG4152|consen 651 KTSLVTGQAYRFRVTAINGKGPGPASTILKLKTC 684 (830)
T ss_pred ccccccccceeeeeeeeeccCCCchhhheeeeec
Confidence 4678999999999999999999988876665544
No 426
>PF15102 TMEM154: TMEM154 protein family
Probab=90.52 E-value=0.37 Score=44.44 Aligned_cols=18 Identities=6% Similarity=0.270 Sum_probs=8.2
Q ss_pred HHHHHHheeeEEEEeecc
Q psy574 786 AVMALLFLAMFFVRRRTL 803 (977)
Q Consensus 786 ~lll~i~~~~~~~~rr~~ 803 (977)
+|||+++++++++||||.
T Consensus 70 lLLl~vV~lv~~~kRkr~ 87 (146)
T PF15102_consen 70 LLLLSVVCLVIYYKRKRT 87 (146)
T ss_pred HHHHHHHHheeEEeeccc
Confidence 334444444444455544
No 427
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=89.88 E-value=0.45 Score=48.45 Aligned_cols=47 Identities=23% Similarity=0.485 Sum_probs=40.1
Q ss_pred CceEEEEEC-CEEcCCCCcEEEecCceEEEeccCCCCCeEEEEEEEcC
Q psy574 320 EGSVQWWRG-EREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSP 366 (977)
Q Consensus 320 ~p~i~W~~~-g~~l~~~~~~~~~~~~sl~I~~v~~~d~G~Y~C~a~n~ 366 (977)
.|.+.|..+ |..+....++.+++.|.|.+.+.+..++|.|+|...-.
T Consensus 12 DP~y~W~GP~g~~l~gn~~~nIT~TG~L~~~~F~esmSG~YTCtLsYk 59 (271)
T PF07354_consen 12 DPTYLWTGPNGKPLSGNSYVNITETGKLMFKNFQESMSGSYTCTLSYK 59 (271)
T ss_pred CCceEEECCCCcccCCCCeEEEccCceEEeeccccccCCceEEEEEEE
Confidence 578999875 55566668999999999999999999999999987643
No 428
>PHA03042 CD47-like protein; Provisional
Probab=89.70 E-value=1.5 Score=44.89 Aligned_cols=60 Identities=22% Similarity=0.315 Sum_probs=40.6
Q ss_pred CCCcEEEEEECCCCCC------CCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecCce
Q psy574 19 AGDTALLECGPPRGHP------EPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGT 86 (977)
Q Consensus 19 ~G~~v~L~C~~~~g~P------~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g~ 86 (977)
=.+++.++|.+ .++ +..|.|+.||+.+...+.. ...+|++.. ..+=.|+|+|+|.+...+
T Consensus 30 CN~TV~IpC~v--~n~~~~ni~~~~V~Wkf~~~~If~~n~t-----n~aSL~~~f-~~~l~GNYTCEv~~l~n~ 95 (286)
T PHA03042 30 CNKTIVIVCNL--NLLIYYNISNIHINWKFNNKVIFKKNNT-----NTSSLKFNF-SKNLSGNYTCEAINKFNK 95 (286)
T ss_pred cCceEEEEeec--CChhhcCccceEEEEEeCCeeEEEecCC-----cceEEEEec-cccCCCceeEEEeecccC
Confidence 36889999988 333 4579999999998533221 123466643 344489999999875543
No 429
>PF09067 EpoR_lig-bind: Erythropoietin receptor, ligand binding; InterPro: IPR015152 Members of this entry include the growth hormone and erythropoietin receptors. The latter interacts with erythropoietin (EPO), with subsequent initiation of the downstream chain of events associated with binding of EPO to the receptor, including EPO-induced erythroblast proliferation and differentiation through induction of the JAK2/STAT5 signalling cascade. The domain adopts a secondary structure composed of a short amino-terminal helix, followed by two beta-sandwich regions []. ; PDB: 3NCB_B 3NCF_B 3NCE_B 3N0P_B 3NCC_B 1BP3_B 3N06_B 3MZG_B 3D48_R 1F6F_C ....
Probab=89.70 E-value=1.5 Score=38.73 Aligned_cols=81 Identities=16% Similarity=0.245 Sum_probs=58.7
Q ss_pred CCCCCCCCCeEEeeCCCceEEEEEcCCCCCCcccceEEEEEeecCCCCCCCCCCCCcccEEEeceec----Cc-----Ce
Q psy574 396 TYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNV----PS-----PI 466 (977)
Q Consensus 396 ~~p~~P~~~~v~~~~~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~~~----~~-----~~ 466 (977)
.+|+.|.++.+.......+++-|.++.. ++. ...|.+.|.... . .|....... .+ ..
T Consensus 6 ~~p~~P~~~~C~S~~~etftC~W~~g~~-~~l-~~~y~L~Y~~~~-~-----------~~~eCp~~~~~~~ns~~~~~C~ 71 (104)
T PF09067_consen 6 LPPEKPENLKCFSREMETFTCFWEPGSE-GNL-PTNYTLFYKKEG-E-----------EWKECPDYSTSGPNSTVRHICY 71 (104)
T ss_dssp HHCCCCEEEEEEBSSSS-EEEEEEEESS-STS-TCEEEEEEEETT-S-----------EEEEESESSTTETTEEEEEEEE
T ss_pred cCCCCCccCccCCCCCCcEEEEeeCCCC-CCC-CCcEEEEEEeCC-C-----------CCccCCCeEecCCCCceeEEEE
Confidence 4688899999998888899999999887 332 344999998765 2 677665221 22 33
Q ss_pred EEEEccCCCCeEEEEEEEEcCCCC
Q psy574 467 LTVTNLTVGLTYTFLVRALNSHGL 490 (977)
Q Consensus 467 ~~i~~L~p~t~Y~~~V~a~n~~G~ 490 (977)
|.-.+..-++.|.++|.|.|..|.
T Consensus 72 F~~~~t~lf~~y~i~V~a~~~~~~ 95 (104)
T PF09067_consen 72 FPKSDTSLFVPYCIQVEATNALGS 95 (104)
T ss_dssp E-CCGCSSSSEEEEEEEEEETTEE
T ss_pred cCCCCeEEEEEEEEEEEeccCCCc
Confidence 344588999999999999997764
No 430
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=89.41 E-value=1.8 Score=37.11 Aligned_cols=66 Identities=21% Similarity=0.405 Sum_probs=46.4
Q ss_pred CCCceEEeCCCeEEEEEEecc-----cCceEEEEEECCeeCCCCceEEeccc--eEEEccCccCCCeEEEEEE
Q psy574 105 GPKDTTVSASSIIVFECSVGG-----DAVLTVHWKRLGSAMPEDRMSVLPSR--SLQLSDVRLEDAGEYVCEA 170 (977)
Q Consensus 105 ~p~~~~v~~G~~v~l~C~v~g-----~p~~~i~W~k~~~~l~~~~~~~~~~~--~L~I~~v~~~D~G~Y~C~a 170 (977)
.|+...+..|+.+++.|.... .....|.|+.++..++.+++....++ ++++.+......-.|-|..
T Consensus 9 ~p~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~~qy~~in~~~SsVT~~~~~~~~~~L~cC~l 81 (89)
T PF06328_consen 9 SPPSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPGSQYRVINDTVSSVTLPNLNPTGATLFCCKL 81 (89)
T ss_dssp ECSSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTCGCEEEESTTEEEEEESS--SSEEEEEEEEE
T ss_pred ecCCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECChhHcceeCCeEEEEEEccCCCCCceEEEEEE
Confidence 355667899999999999832 35668999999999999999888765 4556665555555666653
No 431
>KOG4228|consensus
Probab=89.36 E-value=0.84 Score=55.80 Aligned_cols=106 Identities=11% Similarity=0.000 Sum_probs=62.7
Q ss_pred eEeCCCeEEEEEEecCCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeecceeCCCCCce
Q psy574 553 KPMTSTSVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLR 632 (977)
Q Consensus 553 ~~~~~tsv~lsW~~p~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~g~~s~~~ 632 (977)
...+.++++++|.++....+..|++.+...+.. ....... ....+....++.|-..|.++..+....+.+.....+
T Consensus 173 ~~~~~~~it~~w~~~~~~~~~~ykl~~~~~d~~--~~~~v~~--~~~~~~~t~~~~~~~~~~~~~ae~~~~~~~~~~a~i 248 (1087)
T KOG4228|consen 173 EEEEYTTITGSWSPPHAVSLDTYKLLHLDPDTG--YEISVTL--TPPGSGGTGDLGPPSISRFKCAEPDRGPLGSSTAEI 248 (1087)
T ss_pred cceEEEEEEecCCCCCcccchhhhhhhcCCccc--ceeeeec--cCCCCCcccCCCCcccccccccCccccccCCCCcce
Confidence 556778999999999888888899888766421 1111111 233445556677777787777776666655555556
Q ss_pred EEeccCCCCCCCCceeEEEEecCcEEEEEeeCC
Q psy574 633 AVRTLECEPSGVPQLTDPVLLNATSVLLKWKPP 665 (977)
Q Consensus 633 ~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p 665 (977)
.+++...+ ...+........+.+..+|..+
T Consensus 249 ~~r~~~s~---~~~~~~~~~~~~~~~~~t~~~~ 278 (1087)
T KOG4228|consen 249 EARQLQSV---SKKNFETKHVFKNLVPGTWESF 278 (1087)
T ss_pred EEEehhhh---hccccccceeecccCCceeeee
Confidence 66655542 1122222233344455555544
No 432
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=89.20 E-value=0.76 Score=49.98 Aligned_cols=19 Identities=5% Similarity=0.064 Sum_probs=14.2
Q ss_pred eEEEEEEEEcCCCcCCCCCc
Q psy574 711 RYSVSLAATNRAGTGPYSRP 730 (977)
Q Consensus 711 ~Y~~~V~A~~~~G~g~~S~~ 730 (977)
...++|+|+...+.+ |+..
T Consensus 243 ~~~lqvQaF~~~~~~-Fg~a 261 (306)
T PF01299_consen 243 LSDLQVQAFRVKNNT-FGTA 261 (306)
T ss_pred EeEEEEEEEEecCCC-CCCh
Confidence 567899999887666 7654
No 433
>PF09240 IL6Ra-bind: Interleukin-6 receptor alpha chain, binding; InterPro: IPR015321 Members of this entry adopt a structure consisting of an immunoglobulin-like beta-sandwich, with seven strands in two beta-sheets, in a Greek-key topology. They are required for binding to the cytokine Interleukin-6 []. ; PDB: 1N26_A 1P9M_C 3LB6_C 1PVH_A 3L5H_A 1BQU_A 1I1R_A 3QT2_B 3BPN_C 3BPO_C ....
Probab=88.63 E-value=7 Score=34.31 Aligned_cols=80 Identities=10% Similarity=-0.067 Sum_probs=55.8
Q ss_pred EEEEEeeEeCCCeEEEEEEec-CCCccceEEEEEEecCCCCCceEEEEeec-CccceEEECCCCC----CcEEEEEEEEe
Q psy574 547 IELTEVKPMTSTSVKLTWEIL-NTDYIEGVYIYSRGLDPPASVAMLTVLHA-GEASGFLVTGLAH----YSRYEFFLVPF 620 (977)
Q Consensus 547 ~~~l~~~~~~~tsv~lsW~~p-~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~-~~~~~~~i~~L~p----~t~Y~~~V~a~ 620 (977)
+++|.+...+...|..+|++. ....-+.|.++|+................ +....+.+..... +..|.|.|...
T Consensus 2 ~~nlsC~~~~~~~m~CtW~~g~~~~~~t~y~L~~~~~~~~~~~eC~~y~~~~~~~~gC~~~~~~~~~~~~~~~~v~V~~s 81 (99)
T PF09240_consen 2 PQNLSCFIYNLEYMNCTWEPGKEAPPDTQYTLYYWYSPLEEEKECPHYSKDSGTRIGCQFPVSEIDSSEFSQYNVCVNGS 81 (99)
T ss_dssp -EEEEEEEETTTEEEEEEECCTTCSTTEEEEEEEEETTSSSEEEESEEEESTSSEEEEEEESCTT-TTTTSEEEEEEEEE
T ss_pred CeeCEEEEECCEEEEEEECCCCCCCCcccEEEEEEcCCCCccccCCCccccCCceeEEEecCCCccccccceEEEEEEec
Confidence 478999999999999999997 44455789999999764333333333222 2345666666555 46899999988
Q ss_pred ecceeC
Q psy574 621 FGSVDG 626 (977)
Q Consensus 621 n~~g~g 626 (977)
+..|.-
T Consensus 82 s~~~~i 87 (99)
T PF09240_consen 82 SSAGSI 87 (99)
T ss_dssp ETTEEE
T ss_pred cCCCcc
Confidence 877653
No 434
>COG4733 Phage-related protein, tail component [Function unknown]
Probab=88.24 E-value=4.4 Score=48.07 Aligned_cols=126 Identities=14% Similarity=0.103 Sum_probs=72.2
Q ss_pred CccceEEECCCCCCcEEEEEEEEeecceeCCCCC-ceEEecc-CCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeee
Q psy574 597 GEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSN-LRAVRTL-ECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVI 674 (977)
Q Consensus 597 ~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~g~~s~-~~~~~T~-~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i 674 (977)
.....+.+.+|-+ ..|.++|+|.|..+...... ...|+.. ..+|+..+..+...... -.+.+.|-.| . ..-.+
T Consensus 657 t~~~~~~~~gi~~-GqY~i~VrAiN~~g~~~~~a~s~~f~i~g~~~Ppp~~~t~~a~~it-~~~~l~v~dP--t-~~~d~ 731 (952)
T COG4733 657 TSAAGFDVEGIPA-GQYAIRVRAINVFEPNSPDATAYEFALNGKKVPPPKAMIYDAVIIT-LVIRLVVGDP--T-GAVDI 731 (952)
T ss_pred ccccceeecCcCc-cceEEEEEEeeccCCCCCCcceeEEEecCCCCCCCcccccceEEEE-eeeeEEEecC--C-cceEE
Confidence 4567899999998 89999999999988754444 4444432 23343344444444433 3478889877 2 11122
Q ss_pred eEEEEEEEecCCcceEEEEecCCcCeEEe--cCCCCCceEEEEEEEEcCCCcCCCC
Q psy574 675 RTYQIIVGGGNNSALINMTVSASTPTLLL--TNLSAGIRYSVSLAATNRAGTGPYS 728 (977)
Q Consensus 675 ~~Y~v~~~~~~~~~~~~~~~~~~~~~~~l--~~L~p~t~Y~~~V~A~~~~G~g~~S 728 (977)
..=++++....+.... ...-++.....+ .+|++|..|.|++|+++..|...+-
T Consensus 732 ~~sei~~s~~~d~~~~-Ar~LG~~~~~~~~~~~i~~g~~~~F~~R~Vn~vG~~~~~ 786 (952)
T COG4733 732 TSTEIRSAVIADGNFQ-ARSLGNLNYPGLFSVGIQAGLTFWFRNRNVDLVGNNDKW 786 (952)
T ss_pred eeeeeeeeccccchhH-HhhhhccccccccccCcCCCceEEEEeeecccccccccc
Confidence 2222332221111110 111112221122 5899999999999999999875543
No 435
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=88.13 E-value=2.7 Score=36.03 Aligned_cols=70 Identities=21% Similarity=0.438 Sum_probs=47.5
Q ss_pred eecccceEEeCCCcEEEEEECCCC----CCCCeEEEEeCCEEeecCCCceEEEecCc--EEEEcCCCCCCCeEEEEEEE
Q psy574 9 RVQPKSQRVAAGDTALLECGPPRG----HPEPTLVWKKNGHPIDFENSKRLRLVDGT--NLAIQDSRKTDDGRYQCVVK 81 (977)
Q Consensus 9 ~~~p~~~~v~~G~~v~L~C~~~~g----~P~~~v~W~k~g~~l~~~~~~r~~~~~~g--~L~I~~v~~~D~G~Y~C~a~ 81 (977)
.+.|....+..|.+++..|....+ .....|.|+.|++.++ ..+++...++ ++++.+.....+-.|-|...
T Consensus 7 ~i~p~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP---~~qy~~in~~~SsVT~~~~~~~~~~L~cC~l~ 82 (89)
T PF06328_consen 7 VISPPSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIP---GSQYRVINDTVSSVTLPNLNPTGATLFCCKLA 82 (89)
T ss_dssp EEECSSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCEST---CGCEEEESTTEEEEEESS--SSEEEEEEEEEC
T ss_pred EEecCCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECC---hhHcceeCCeEEEEEEccCCCCCceEEEEEEc
Confidence 456778889999999999988333 2456899999999773 3456655554 46777776666667777743
No 436
>PHA03286 envelope glycoprotein E; Provisional
Probab=88.06 E-value=20 Score=39.78 Aligned_cols=76 Identities=17% Similarity=0.110 Sum_probs=52.8
Q ss_pred cEEEEcCCCCCCCeEEEEEEEecCceeeeEeEEEEEEc-----CCeEE--------------eCCCceEEeCCCeEEEEE
Q psy574 61 TNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLV-----KPYII--------------RGPKDTTVSASSIIVFEC 121 (977)
Q Consensus 61 g~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V~~-----~P~~~--------------~~p~~~~v~~G~~v~l~C 121 (977)
+.|.|.+++.+++|.|+-...|+.|......+.|.|.. +|... ..+......+|+++.+.-
T Consensus 127 ~~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~~~~~~r~p~~~~pv~p~~~~~~f~l~ny~S~lF~~GDTF~vSv 206 (492)
T PHA03286 127 KELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVSGHGRARDPTMNIPITPPSTRVDLSLKNFKAFLYNVGDTVDASV 206 (492)
T ss_pred CceEEeeccccccceEEEEEcCCCCcEEEEEEEEEEecCCCCCCCCcccCCCCcccceEEEEecccceEecCCCeEEEEE
Confidence 46999999999999999999988777666777888842 12111 223444667899997765
Q ss_pred Eec-----ccCceEEEEEEC
Q psy574 122 SVG-----GDAVLTVHWKRL 136 (977)
Q Consensus 122 ~v~-----g~p~~~i~W~k~ 136 (977)
... +.-...|.|++-
T Consensus 207 ~l~~~~~d~~Fsl~i~W~y~ 226 (492)
T PHA03286 207 TAHLTNWAGAFSLEFRVLFL 226 (492)
T ss_pred EEeecccCCCceEEEEEEEe
Confidence 542 112357899874
No 437
>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []. EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.
Probab=86.68 E-value=37 Score=34.09 Aligned_cols=133 Identities=14% Similarity=0.264 Sum_probs=65.7
Q ss_pred CeEEEEeCCEEeecCC-CceEEEecCc------EEEE-cCCCCCCCeEEEEEEEecCceeeeEeEEEEEEcCCeEEeCCC
Q psy574 36 PTLVWKKNGHPIDFEN-SKRLRLVDGT------NLAI-QDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPK 107 (977)
Q Consensus 36 ~~v~W~k~g~~l~~~~-~~r~~~~~~g------~L~I-~~v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V~~~P~~~~~p~ 107 (977)
..+.|+.||..+.... ..+.....+| +|.+ .+...+-.=..+|.+.-.......+.+ .-...|.+...|.
T Consensus 7 ~~~~Wf~dg~~v~~~~~~~~~~~~~~G~~s~vStl~~~~~~~~~~pp~i~C~v~W~r~~v~~~r~--~a~~~P~Vy~~P~ 84 (211)
T PF02124_consen 7 VRFRWFEDGNPVEPRFIRDSSQVWSDGLFSRVSTLTLPGNSADSPPPSIRCQVTWYRDSVSETRF--NATATPSVYPKPR 84 (211)
T ss_pred EEEEEEECCEeCCccceeeEEEEecCCcEEEEEEEEecCCCCCCCCCcceEEEEEccCCCeeeEe--ecccccceecCCE
Confidence 4789999999885322 1222333344 3555 222333344899998765432222211 2222333443332
Q ss_pred ceEEeCCCeEEEEEEecccC--ceEEEEEECCeeCCCC-ceEEe-----ccceEEEccCc--cCCCe--EEEEEEEe
Q psy574 108 DTTVSASSIIVFECSVGGDA--VLTVHWKRLGSAMPED-RMSVL-----PSRSLQLSDVR--LEDAG--EYVCEAEN 172 (977)
Q Consensus 108 ~~~v~~G~~v~l~C~v~g~p--~~~i~W~k~~~~l~~~-~~~~~-----~~~~L~I~~v~--~~D~G--~Y~C~a~n 172 (977)
-..-.++ -...|.+.--| ...+.|.-++...... ..... ..+...|.+.. ....| .|+|....
T Consensus 85 vsv~F~~--g~AVC~A~CVP~~~v~l~W~v~d~~~~~~~~~~~~g~C~~~pglvnirs~~pls~~~~~~~YtC~l~G 159 (211)
T PF02124_consen 85 VSVRFED--GYAVCTARCVPRGNVTLRWSVGDDPSPAPAATEITGVCAEHPGLVNIRSRRPLSDEDGPVEYTCRLIG 159 (211)
T ss_pred EEEEecC--CEEEEEcceeeCCCeEEEEEECCccCCCCCceeecCcccCCcceeEeecccCCCccCCceeEEEEEee
Confidence 2211222 23446653222 3689999887754221 11211 22445555443 23345 89999864
No 438
>PHA03052 Hypothetical protein; Provisional
Probab=85.76 E-value=2.6 Score=33.18 Aligned_cols=47 Identities=17% Similarity=0.422 Sum_probs=34.7
Q ss_pred cccceEEeCCCcEEEEEECCCCCC--CCeEEEEeCCEEeecCC---CceEEE
Q psy574 11 QPKSQRVAAGDTALLECGPPRGHP--EPTLVWKKNGHPIDFEN---SKRLRL 57 (977)
Q Consensus 11 ~p~~~~v~~G~~v~L~C~~~~g~P--~~~v~W~k~g~~l~~~~---~~r~~~ 57 (977)
.|..+.+..|..++|.|.+.-+.| .+.|.|.-|+..++.++ ++|+..
T Consensus 3 ~P~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~e~~d~~g~gRI~~ 54 (69)
T PHA03052 3 LPEGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYYEEDDDDGDGRISI 54 (69)
T ss_pred CCccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEEeccccCCCcceEe
Confidence 356688999999999999833333 56899999999995443 455544
No 439
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=85.41 E-value=0.24 Score=33.82 Aligned_cols=16 Identities=13% Similarity=0.162 Sum_probs=6.4
Q ss_pred hhhhHHHHHHHHHHHH
Q psy574 776 WFIALLTSMVAVMALL 791 (977)
Q Consensus 776 ~~i~~v~~~~~lll~i 791 (977)
.+|+.+++++.+++++
T Consensus 7 aIIv~V~vg~~iiii~ 22 (38)
T PF02439_consen 7 AIIVAVVVGMAIIIIC 22 (38)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3444444333333333
No 440
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=85.18 E-value=4.2 Score=46.24 Aligned_cols=77 Identities=16% Similarity=0.253 Sum_probs=14.4
Q ss_pred CcEEEEcCCCCCCCeEEEEEEEecCceeeeEeEEEEEEcCCeE--------------------EeCCCceEEeCCCeEEE
Q psy574 60 GTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYI--------------------IRGPKDTTVSASSIIVF 119 (977)
Q Consensus 60 ~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V~~~P~~--------------------~~~p~~~~v~~G~~v~l 119 (977)
.|.|.|.+++.+|+|.|.-...+..+......+.|.|..+... +..+.......|+++.+
T Consensus 88 ~~~l~i~~a~~~~~GvY~l~~~~~~~~~~~~~~~v~v~~~~~~~~~p~p~~p~~p~~~~~~~~~~~~~s~vf~~Gdtf~~ 167 (439)
T PF02480_consen 88 KGGLSILNATEQDSGVYTLYVRNDSGWAHQSVVFVTVKGPAPDPRTPPPHHPIVPHRHGATFHLKNYHSHVFSPGDTFHL 167 (439)
T ss_dssp ----------------------------------------------------------SEEEEEE--SEEE--TT--EE-
T ss_pred CCceEEeccccccCeeEEEEecCCCCceEEEEEEEEEcCCCcCCCCCCCCCCCCCcccccEEEEeccceEEecCCCcEEE
Confidence 4679999999999999999998777665555566666642111 12233446678999888
Q ss_pred EEEeccc--C----ceEEEEEEC
Q psy574 120 ECSVGGD--A----VLTVHWKRL 136 (977)
Q Consensus 120 ~C~v~g~--p----~~~i~W~k~ 136 (977)
.-.+.-. . ...|.|++-
T Consensus 168 ~v~l~~~~~d~~~f~~~i~W~~~ 190 (439)
T PF02480_consen 168 SVHLQSEAHDDPPFSLEIDWYYM 190 (439)
T ss_dssp --EEEEEESSS--EEEEEEEEEE
T ss_pred eEEEEeccCCCCCeeEEEEEEEe
Confidence 7765211 1 347999884
No 441
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=84.85 E-value=0.28 Score=51.63 Aligned_cols=18 Identities=11% Similarity=0.279 Sum_probs=0.0
Q ss_pred eeEEEEecCcEEEEEeeC
Q psy574 647 LTDPVLLNATSVLLKWKP 664 (977)
Q Consensus 647 ~v~~~~~~~~sv~v~W~~ 664 (977)
.+++..++.+++.|+|.-
T Consensus 39 ~ItV~sIt~gstiVtwtN 56 (290)
T PF05454_consen 39 SITVRSITSGSTIVTWTN 56 (290)
T ss_dssp ------------------
T ss_pred eEEEEEecCCCEEEEEEc
Confidence 556666667788888854
No 442
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=83.70 E-value=7.9 Score=32.41 Aligned_cols=52 Identities=17% Similarity=0.245 Sum_probs=34.9
Q ss_pred ceEEEEEECCeeCCCCceEEeccceEEEccCccCCCeEEEEEE-EeCCeeEEEEEEEEE
Q psy574 128 VLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEA-ENAVGKISASATLTV 185 (977)
Q Consensus 128 ~~~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a-~n~~g~~~~~~~L~V 185 (977)
.+.+.|+..+.... .....+.+...+.+|+|.+.|.| .+..-.....+.|.|
T Consensus 26 ~~~~~l~~~~~k~~------~~~~~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~v 78 (80)
T PF05790_consen 26 KPSLFLENPGKKSL------ETKKLVSTFTPTTEDSGTWVCTASDNEPKERESKIEILV 78 (80)
T ss_dssp CEEEEEECSSCEEE------EESSEEEEESBTCGGSEEEEEEEEECTTEEEEEEEEEEE
T ss_pred ChhheeeccCcccc------ccceEEEEecCCCCCCEEEEEEEcCCceEEEEEEEEEEc
Confidence 45667776655432 13455677888899999999999 666555556666655
No 443
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=83.48 E-value=3.7 Score=32.80 Aligned_cols=28 Identities=25% Similarity=0.494 Sum_probs=20.8
Q ss_pred eEEecCCCCCceEEEEEEEEcCCCcCCCC
Q psy574 700 TLLLTNLSAGIRYSVSLAATNRAGTGPYS 728 (977)
Q Consensus 700 ~~~l~~L~p~t~Y~~~V~A~~~~G~g~~S 728 (977)
.+.+++|.|| .|.|+|+|.+..|.-...
T Consensus 30 ~~~~~~L~~G-~Y~l~V~a~~~~~~~~~~ 57 (66)
T PF07495_consen 30 SISYTNLPPG-KYTLEVRAKDNNGKWSSD 57 (66)
T ss_dssp EEEEES--SE-EEEEEEEEEETTS-B-SS
T ss_pred EEEEEeCCCE-EEEEEEEEECCCCCcCcc
Confidence 8999999999 699999999988765443
No 444
>PHA03283 envelope glycoprotein E; Provisional
Probab=83.46 E-value=36 Score=38.65 Aligned_cols=75 Identities=17% Similarity=0.208 Sum_probs=50.2
Q ss_pred cEEEEcCCCCCCCeEEEEEEEecCceeeeEeEEEEEEcCCe---------EEeCC------------CceEEeCCCeEEE
Q psy574 61 TNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPY---------IIRGP------------KDTTVSASSIIVF 119 (977)
Q Consensus 61 g~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V~~~P~---------~~~~p------------~~~~v~~G~~v~l 119 (977)
+.|.|.+++.+++|.|+-...+..+ .....+.|+|..++. ....| ......+|+++.+
T Consensus 134 ~~l~I~~at~~~aGVYtly~r~d~~-~~~~vflvtVk~~~~~~~~~Pp~~~pv~P~~h~a~f~v~nYhS~vf~~GDtf~l 212 (542)
T PHA03283 134 SVLQIQRATPNIAGVYTLHVSSDGM-MKHSVFFVTVKKPPKQPQTPPAPLVPQVPARHHTDFHVRGYHSRVYSPGDSFDL 212 (542)
T ss_pred CeeEEEecccccCeEEEEEecCCCc-eEEEEEEEEecCCCcCCCCCCCCccccCCccCCceEEEecceeEEecCCCceeE
Confidence 4699999999999999999998766 334556777875211 11111 2335678999988
Q ss_pred EEEeccc---C--ceEEEEEEC
Q psy574 120 ECSVGGD---A--VLTVHWKRL 136 (977)
Q Consensus 120 ~C~v~g~---p--~~~i~W~k~ 136 (977)
.-..... + ...|.|++-
T Consensus 213 si~l~s~~~d~~fs~~i~Wyy~ 234 (542)
T PHA03283 213 SVHLESDIGDPSFSATIDWYYM 234 (542)
T ss_pred eEEEeeccCCCCceEEEEEEEe
Confidence 6655221 2 347999874
No 445
>KOG1225|consensus
Probab=82.58 E-value=2.5 Score=48.55 Aligned_cols=154 Identities=14% Similarity=0.077 Sum_probs=99.9
Q ss_pred EEEeeEeCCCeEEEEEEecCCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeecceeCCC
Q psy574 549 LTEVKPMTSTSVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKP 628 (977)
Q Consensus 549 ~l~~~~~~~tsv~lsW~~p~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~g~~ 628 (977)
.+.+...+..++.+.|. .....+.|...|...+.+..-. ..........+.+..|.|++.|.++|++.-..-.+.+
T Consensus 371 ~~~~~~cs~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~ 446 (525)
T KOG1225|consen 371 LLLITECSPPSLCIAGV--GRRRVTHCAGTYCPLGESGGDL--QGRVPGDANSVDIQGLEPGDEYNCSVNTVAANIGSLP 446 (525)
T ss_pred hhcccccCCCceeeccc--cccccccccccccccccCCCcc--ceeeccceeeeeeeeecCCcceeeehhhhhhhhccCC
Confidence 34555667777888888 3333455665555543322212 2233467788999999999999999998865433322
Q ss_pred CCceEEeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCcceEEEEecCCcCeEEecCCCC
Q psy574 629 SNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSA 708 (977)
Q Consensus 629 s~~~~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~l~~L~p 708 (977)
.. ....|... -+..+.+.....+++.+.|..|. . ...+|++.|.....+-..........+.+..++|.|
T Consensus 447 ~~-~~~~~~~~----~~g~~~v~~~~~~s~e~~g~~~s--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 516 (525)
T KOG1225|consen 447 KD-KSETTVLC----WNGGLCVDGETESSLEVGGPCPS--S---GTCGWEVRCGPCGNDGGVNAEPPPECTSYDRTGLGP 516 (525)
T ss_pred cc-cccceEee----cCCceeeeeeeeccccccCCCCC--c---cccceEEEeeecCcccccccCCCCCCCCCCccCccc
Confidence 21 22223332 34577778888899999999984 2 235678877333344344455555778899999999
Q ss_pred CceEEEEE
Q psy574 709 GIRYSVSL 716 (977)
Q Consensus 709 ~t~Y~~~V 716 (977)
++.|.+.+
T Consensus 517 c~~~~~~~ 524 (525)
T KOG1225|consen 517 CTEYEVSV 524 (525)
T ss_pred ccceeccc
Confidence 99998865
No 446
>PF09240 IL6Ra-bind: Interleukin-6 receptor alpha chain, binding; InterPro: IPR015321 Members of this entry adopt a structure consisting of an immunoglobulin-like beta-sandwich, with seven strands in two beta-sheets, in a Greek-key topology. They are required for binding to the cytokine Interleukin-6 []. ; PDB: 1N26_A 1P9M_C 3LB6_C 1PVH_A 3L5H_A 1BQU_A 1I1R_A 3QT2_B 3BPN_C 3BPO_C ....
Probab=82.25 E-value=8.3 Score=33.86 Aligned_cols=79 Identities=11% Similarity=0.067 Sum_probs=51.0
Q ss_pred CCCCeEEeeCCCceEEEEEcCCCCCCcccceEEEEEeecCCCCCCCCCCCCcccEEEeceecC---cCeEEEEccCC---
Q psy574 401 PTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVP---SPILTVTNLTV--- 474 (977)
Q Consensus 401 P~~~~v~~~~~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~~~~---~~~~~i~~L~p--- 474 (977)
|.++.+.-.+...+.++|.+... ..+.+.|.+.|+...... ...+...... .....+.....
T Consensus 2 ~~nlsC~~~~~~~m~CtW~~g~~--~~~~t~y~L~~~~~~~~~----------~~eC~~y~~~~~~~~gC~~~~~~~~~~ 69 (99)
T PF09240_consen 2 PQNLSCFIYNLEYMNCTWEPGKE--APPDTQYTLYYWYSPLEE----------EKECPHYSKDSGTRIGCQFPVSEIDSS 69 (99)
T ss_dssp -EEEEEEEETTTEEEEEEECCTT--CSTTEEEEEEEEETTSSS----------EEEESEEEESTSSEEEEEEESCTT-TT
T ss_pred CeeCEEEEECCEEEEEEECCCCC--CCCcccEEEEEEcCCCCc----------cccCCCccccCCceeEEEecCCCcccc
Confidence 56777877788899999998776 445689999998865442 2222221111 22334444444
Q ss_pred -CCeEEEEEEEEcCCCCC
Q psy574 475 -GLTYTFLVRALNSHGLS 491 (977)
Q Consensus 475 -~t~Y~~~V~a~n~~G~s 491 (977)
+..|.|.|.+.+..|.-
T Consensus 70 ~~~~~~v~V~~ss~~~~i 87 (99)
T PF09240_consen 70 EFSQYNVCVNGSSSAGSI 87 (99)
T ss_dssp TTSEEEEEEEEEETTEEE
T ss_pred ccceEEEEEEeccCCCcc
Confidence 45899999998877643
No 447
>PRK14081 triple tyrosine motif-containing protein; Provisional
Probab=82.05 E-value=1.2e+02 Score=36.28 Aligned_cols=357 Identities=12% Similarity=0.104 Sum_probs=185.5
Q ss_pred CCCCCCeEE--EEEEEecCceee---eEeEEEEEE--cCCeE---EeCCCceEEeCCCeEEEEEEecccCceEEEEEECC
Q psy574 68 SRKTDDGRY--QCVVKNVAGTRE---STDAVLRVL--VKPYI---IRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLG 137 (977)
Q Consensus 68 v~~~D~G~Y--~C~a~n~~g~~~---s~~~~l~V~--~~P~~---~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~ 137 (977)
-.+..+|.| .|.+.+.....+ ......+|. .++.+ .... +.....|+.+.|.+.+.|.-...+...-.|
T Consensus 250 y~~~~~G~Y~i~~~VKD~~S~~eyDD~~~l~y~Vk~~~~vkI~~~~~d~-~s~ql~g~~I~ika~a~GG~~llYrf~I~G 328 (667)
T PRK14081 250 YKEKKSGDYKLLCLVKDMYSNNEFDDRAVLVYTVKPYKDIKIRNFTTDL-SSPQLTDTDIELKAVAEGGKELLYRFIIKG 328 (667)
T ss_pred EEeCCCccEEEEEEEeccCcccccccceEEEEEEecCCCcEEEEEEEcC-CCCeecCceEEEEEEecCCCceEEEEEECC
Confidence 346678877 566665543221 222233343 22222 2222 223468999999999976555555443344
Q ss_pred eeCCCCceEEeccceEEEccCccCCCeEEEEEEEeCCe----e--EEEEEEEEEeeC---Ce-EE--ecCCCcEEeeCCe
Q psy574 138 SAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVG----K--ISASATLTVQMA---PI-VR--ERPSDLRLEVGRD 205 (977)
Q Consensus 138 ~~l~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g----~--~~~~~~L~V~~~---p~-~~--~~p~~~~v~~G~~ 205 (977)
..+....+. ....+ +-.+..+|.|.-.+.-... . ....+...|... |. +. ..+.......|+.
T Consensus 329 ~~~e~~~Y~--~~n~~---~w~P~~~G~Y~I~v~VKDk~S~~eyD~~~~v~f~i~~~~~~p~~I~~vl~d~~~~~lvG~~ 403 (667)
T PRK14081 329 KESEDSGYI--RNNIY---TWKPKIAGKYSITLWVKDISSKGEYEDKSSIDYTIEEKSKEPIKIEDVILDKGKHILKGEE 403 (667)
T ss_pred cEEeecccc--ccceE---EEeeCCCceEEEEEEEEcCcCcccccceEEEEEEEcccCCCCeEEEEEEECCCCceEeCCe
Confidence 443222211 22233 2345578999887764321 1 344556666643 32 21 2344557888999
Q ss_pred EEEEEEEecCCCCeEE-EEE-cCeeeeecCCCccccEEEEEccCCceEEEEeecccCCCCeEEEEEE--EcCCCce----
Q psy574 206 AVFLCGIEGSPPPSTF-WML-EGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLG--VNAAGSD---- 277 (977)
Q Consensus 206 v~L~C~~~g~p~~~i~-W~~-~g~~~~~~~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a--~n~~g~~---- 277 (977)
+.+.|.+.+.....+. |.+ +|..+....=.... .+.+. +.-+|.|+ ..+ .+.....
T Consensus 404 i~i~v~a~gg~~~lY~f~ik~ng~~ve~~~Y~~~~------------~~~f~---P~~~G~Y~-IeV~vKdk~S~~~yD~ 467 (667)
T PRK14081 404 IKIRVIAEGGTNLRYSFIIKKDGKEEEKIDYGKNN------------WVNFI---PEEKGNYE-LEVRVKDKYSDKEYDA 467 (667)
T ss_pred EEEEEEecCCCeEEEEEEEEECCEEEEEeeccccc------------EEEEE---ECCCeeEE-EEEEEecccCchhccc
Confidence 9999999876544443 444 44433211000011 23332 35678887 433 3333322
Q ss_pred eEEEEEEEECCCCCCCCe-EE--eCCCceeecCCCcEEEEEEEcc--CceEE--EEECCEEcCCCCcEEEecCceEEEec
Q psy574 278 LARASLTVSGPDPNPPPV-IL--FGPANQTLPLRSEARLRCQVRG--EGSVQ--WWRGEREVGSGPRVNVTGDGSLVLTD 350 (977)
Q Consensus 278 ~~~~~l~V~~~~~~~pp~-i~--~~p~~~~v~~g~~~~L~C~~~~--~p~i~--W~~~g~~l~~~~~~~~~~~~sl~I~~ 350 (977)
...+.+.|... .|. +. .-|.......|+.+++.|.+.+ ...+. -+.||..+... . ......+.+.
T Consensus 468 ~k~v~l~V~e~----~P~~i~~il~~~~~~~~vg~~i~~~~~~~~~k~v~y~y~~~~NG~~v~~t-~--Ys~~~~ysf~- 539 (667)
T PRK14081 468 HTIVYIKVHEY----IPAEIDYILLPVKEYYLVGDDIEIEVIIQNTKDVLIKYILKINGHKVEET-D--YIKNKKYKFI- 539 (667)
T ss_pred ceEEEEEEecc----CceeeeeEEecccccEEeCCEEEEEEEEeCCCeEEEEEEEEECCEEEEEe-e--ccccceEEEe-
Confidence 34456777653 233 22 3355566889999999999998 33333 23455544211 0 1122233333
Q ss_pred cCCCCCeEEEEEEEcCCCc------eEEEEEEEEECCCCCCCcccCCCCCCCCCCCCCCCeEEeeCC---CceEEEEEcC
Q psy574 351 VTKEDSGEYTCVVKSPHGS------ASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTA---NGLTLAWSRN 421 (977)
Q Consensus 351 v~~~d~G~Y~C~a~n~~G~------~~~s~~l~v~~~~~~~~~~~~~~~~~~~p~~P~~~~v~~~~~---~sv~lsW~~p 421 (977)
+..+|.|+..+.-.... ......+.|.++ .|+.+..+..... -.-.++|...
T Consensus 540 --P~~~GkY~I~V~aKn~~s~~~~D~~k~v~~~V~e~-----------------~pi~nt~~~~~~~~~~~n~~~t~~~~ 600 (667)
T PRK14081 540 --PKCSGKYTIEVLAKNIKSTEEYDSKKEVKFYVREA-----------------LPITNTKIKTSKKKFKCNEEVTFSVK 600 (667)
T ss_pred --ecCCceEEEEEEEcccccccccccceEEEEEEcCC-----------------CCceeeEEEeecceEEcCCeEEEEEE
Confidence 55788888766533332 234555666543 2233333221111 1235667666
Q ss_pred CCCCCcccceEEEEEeecCCCCCCCCCCCCcccEEEeceecCcCeEEEEccCCCCeEEEEEEEEcCCC
Q psy574 422 NQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHG 489 (977)
Q Consensus 422 ~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~G 489 (977)
.. ++...-|+...... +.|..+..-....-++..-...| .|.+.|.+....+
T Consensus 601 ~~--gg~~v~Yef~v~~~-------------g~w~~vq~ys~k~~ysf~p~~~g-~Y~ilvl~ks~~~ 652 (667)
T PRK14081 601 SE--GGKDVCYEFYIMEK-------------GEWKLVQKYSRKNYYSFMPFNKG-KYKVLVLCKSYYK 652 (667)
T ss_pred cc--CCCcEEEEEEEEEC-------------CcEEEEeeccccCceEEEeccCC-cEEEEEEEecccc
Confidence 55 33444676665542 38988876666666665544444 4777777755443
No 448
>PLN02533 probable purple acid phosphatase
Probab=81.49 E-value=12 Score=42.76 Aligned_cols=86 Identities=8% Similarity=0.108 Sum_probs=52.3
Q ss_pred CCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCC---cc-e-EEEE-------ecCCcCeEEecCCCC
Q psy574 641 PSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNN---SA-L-INMT-------VSASTPTLLLTNLSA 708 (977)
Q Consensus 641 P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~---~~-~-~~~~-------~~~~~~~~~l~~L~p 708 (977)
....|..+++...+.+++.|+|.-.. ... .. |+|..... .. . ...+ ..+....++|++|+|
T Consensus 40 ~~~~P~qvhls~~~~~~m~V~W~T~~--~~~-~~----V~yG~~~~~l~~~a~g~~~~~~~~~~~~~g~iH~v~l~~L~p 112 (427)
T PLN02533 40 DPTHPDQVHISLVGPDKMRISWITQD--SIP-PS----VVYGTVSGKYEGSANGTSSSYHYLLIYRSGQINDVVIGPLKP 112 (427)
T ss_pred CCCCCceEEEEEcCCCeEEEEEECCC--CCC-CE----EEEecCCCCCcceEEEEEEEEeccccccCCeEEEEEeCCCCC
Confidence 33467888888778899999998873 222 22 44433210 00 0 0011 122335689999999
Q ss_pred CceEEEEEEEEcCCCcCCCCCceEEeecCCC
Q psy574 709 GIRYSVSLAATNRAGTGPYSRPALLSLTSGP 739 (977)
Q Consensus 709 ~t~Y~~~V~A~~~~G~g~~S~~~~~~t~~~~ 739 (977)
+|.|..+|. ....|....|+|.+..
T Consensus 113 ~T~Y~Yrvg------~~~~s~~~~F~T~p~~ 137 (427)
T PLN02533 113 NTVYYYKCG------GPSSTQEFSFRTPPSK 137 (427)
T ss_pred CCEEEEEEC------CCCCccceEEECCCCC
Confidence 999999994 2233666778776543
No 449
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=79.90 E-value=0.39 Score=44.71 Aligned_cols=6 Identities=17% Similarity=0.910 Sum_probs=2.2
Q ss_pred hhhhHH
Q psy574 776 WFIALL 781 (977)
Q Consensus 776 ~~i~~v 781 (977)
|++.++
T Consensus 2 W~l~~i 7 (130)
T PF12273_consen 2 WVLFAI 7 (130)
T ss_pred eeeHHH
Confidence 333333
No 450
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=78.74 E-value=0.43 Score=43.12 Aligned_cols=14 Identities=21% Similarity=0.643 Sum_probs=5.3
Q ss_pred HHHHheeeEEEEee
Q psy574 788 MALLFLAMFFVRRR 801 (977)
Q Consensus 788 ll~i~~~~~~~~rr 801 (977)
|++|+++++++||+
T Consensus 78 Ig~Illi~y~irR~ 91 (122)
T PF01102_consen 78 IGIILLISYCIRRL 91 (122)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 451
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=78.64 E-value=27 Score=29.98 Aligned_cols=83 Identities=22% Similarity=0.408 Sum_probs=51.5
Q ss_pred cceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecC---cEEEEcCCCCCCCeEEEEEEEec
Q psy574 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG---TNLAIQDSRKTDDGRYQCVVKNV 83 (977)
Q Consensus 7 ~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~---g~L~I~~v~~~D~G~Y~C~a~n~ 83 (977)
.+++.|....|..|+++.+.|...=..|. .+.|.-. - .+..+..+ ..+.+.|++. | ..-.|.+.=
T Consensus 5 ~v~v~P~~~vV~~G~Sv~VNCStsC~~p~-~~GLET~-------L-~k~~~~~g~~W~~f~LsnV~~-d-s~~~C~~~C- 72 (91)
T PF03921_consen 5 EVRVSPEEPVVPPGGSVWVNCSTSCPQPE-KIGLETS-------L-SKTELDSGPQWKAFQLSNVTE-D-SSPLCFFNC- 72 (91)
T ss_dssp -EEEESSEEEEETTEEEEEEEEESSSS-S-EEEEESS-------S-EEEEEEEETTEEEEEEEEE-S-C-EEEEEEEEE-
T ss_pred EEEEECCccEECCCCCEEEEEcCCCCCCC-cceEEEe-------c-CCcccCCCCcEEEEEEEcccc-C-CeEEEEEEc-
Confidence 45789999999999999999987323332 3445321 1 11111111 2477788886 4 567799874
Q ss_pred CceeeeEeEEEEEEcCCe
Q psy574 84 AGTRESTDAVLRVLVKPY 101 (977)
Q Consensus 84 ~g~~~s~~~~l~V~~~P~ 101 (977)
.|......+.|+|+.+|.
T Consensus 73 ~g~Q~~~~~~ItVY~~Pe 90 (91)
T PF03921_consen 73 SGEQSSASANITVYKPPE 90 (91)
T ss_dssp TTEEEEEEEEEEEEB--S
T ss_pred CCeEEEeEEeeEEeCCCC
Confidence 466667788999998774
No 452
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=76.83 E-value=5.7 Score=42.76 Aligned_cols=22 Identities=18% Similarity=0.297 Sum_probs=17.7
Q ss_pred cEEEEEECCCCCCC-CeEEEEeC
Q psy574 22 TALLECGPPRGHPE-PTLVWKKN 43 (977)
Q Consensus 22 ~v~L~C~~~~g~P~-~~v~W~k~ 43 (977)
.++|.|.+..-+|. ..+.|.||
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEec
Confidence 57999999555665 47899999
No 453
>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []. EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.
Probab=76.53 E-value=64 Score=32.48 Aligned_cols=133 Identities=20% Similarity=0.285 Sum_probs=65.9
Q ss_pred eEEEEEcCeeeeecCCCccccEEEEEccCC----ceEEEE-eecccCCCCeEEEEEEEcCCCceeEEEEEEEECCCCCCC
Q psy574 219 STFWMLEGNRSLIYPGDRVDNIQAEITSDG----MNLLKI-QNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPP 293 (977)
Q Consensus 219 ~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g----~s~L~I-~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~~~~~~p 293 (977)
.+.|+.||.++. +.......+.... | .++|.+ .+...+..-..+ |.+.=..+....+.......+.-.++
T Consensus 8 ~~~Wf~dg~~v~--~~~~~~~~~~~~~--G~~s~vStl~~~~~~~~~~pp~i~-C~v~W~r~~v~~~r~~a~~~P~Vy~~ 82 (211)
T PF02124_consen 8 RFRWFEDGNPVE--PRFIRDSSQVWSD--GLFSRVSTLTLPGNSADSPPPSIR-CQVTWYRDSVSETRFNATATPSVYPK 82 (211)
T ss_pred EEEEEECCEeCC--ccceeeEEEEecC--CcEEEEEEEEecCCCCCCCCCcce-EEEEEccCCCeeeEeecccccceecC
Confidence 578999998653 3223333333332 4 246666 233334455678 87654444333222211111111223
Q ss_pred CeEEeCCCceeecCCCcEEEEEEEcc----CceEEEEECCEEcCCCCcEEEe-----cCceEEEeccCCC--CCe--EEE
Q psy574 294 PVILFGPANQTLPLRSEARLRCQVRG----EGSVQWWRGEREVGSGPRVNVT-----GDGSLVLTDVTKE--DSG--EYT 360 (977)
Q Consensus 294 p~i~~~p~~~~v~~g~~~~L~C~~~~----~p~i~W~~~g~~l~~~~~~~~~-----~~~sl~I~~v~~~--d~G--~Y~ 360 (977)
|.+.. .+.. -...|.+.- ...+.|..++............ ..+...|.+..+- ..| .|+
T Consensus 83 P~vsv-----~F~~---g~AVC~A~CVP~~~v~l~W~v~d~~~~~~~~~~~~g~C~~~pglvnirs~~pls~~~~~~~Yt 154 (211)
T PF02124_consen 83 PRVSV-----RFED---GYAVCTARCVPRGNVTLRWSVGDDPSPAPAATEITGVCAEHPGLVNIRSRRPLSDEDGPVEYT 154 (211)
T ss_pred CEEEE-----EecC---CEEEEEcceeeCCCeEEEEEECCccCCCCCceeecCcccCCcceeEeecccCCCccCCceeEE
Confidence 33322 2222 245566665 4689999888765333333332 2334555544332 344 899
Q ss_pred EEEE
Q psy574 361 CVVK 364 (977)
Q Consensus 361 C~a~ 364 (977)
|.+.
T Consensus 155 C~l~ 158 (211)
T PF02124_consen 155 CRLI 158 (211)
T ss_pred EEEe
Confidence 9876
No 454
>PHA03052 Hypothetical protein; Provisional
Probab=75.87 E-value=9.7 Score=30.13 Aligned_cols=49 Identities=16% Similarity=0.317 Sum_probs=33.2
Q ss_pred CCCcEEeeCCeEEEEEEEec---CCCCeEEEEEcCeeeeecCCCccccEEEE
Q psy574 195 PSDLRLEVGRDAVFLCGIEG---SPPPSTFWMLEGNRSLIYPGDRVDNIQAE 243 (977)
Q Consensus 195 p~~~~v~~G~~v~L~C~~~g---~p~~~i~W~~~g~~~~~~~~~~~~~~~~~ 243 (977)
|....+..|..++|.|.+.- ...+.++|.-|+...........+|++..
T Consensus 4 P~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~e~~d~~g~gRI~~~ 55 (69)
T PHA03052 4 PEGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYYEEDDDDGDGRISIA 55 (69)
T ss_pred CccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEEeccccCCCcceEec
Confidence 45668899999999999952 33457889998877643333334555443
No 455
>COG4733 Phage-related protein, tail component [Function unknown]
Probab=75.20 E-value=20 Score=42.89 Aligned_cols=38 Identities=21% Similarity=0.436 Sum_probs=27.7
Q ss_pred cEEEeceecCcCeEEEEccCCCCeEEEEEEEEcCCCCCCC
Q psy574 454 TWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAP 493 (977)
Q Consensus 454 ~w~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~G~s~~ 493 (977)
.|.... ......|.+.+|-+ -.|.++|+|.|..|....
T Consensus 650 ~~vta~-rt~~~~~~~~gi~~-GqY~i~VrAiN~~g~~~~ 687 (952)
T COG4733 650 NWITAP-RTSAAGFDVEGIPA-GQYAIRVRAINVFEPNSP 687 (952)
T ss_pred ceEecc-cccccceeecCcCc-cceEEEEEEeeccCCCCC
Confidence 444433 34556788999888 679999999998886543
No 456
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=74.97 E-value=8 Score=30.78 Aligned_cols=36 Identities=31% Similarity=0.524 Sum_probs=24.7
Q ss_pred cEEEeceecCcCeEEEEccCCCCeEEEEEEEEcCCCCCC
Q psy574 454 TWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSA 492 (977)
Q Consensus 454 ~w~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~G~s~ 492 (977)
.|........ .+...+|.||+ |+|+|+|.+..|...
T Consensus 20 ~W~~~~~~~~--~~~~~~L~~G~-Y~l~V~a~~~~~~~~ 55 (66)
T PF07495_consen 20 EWITLGSYSN--SISYTNLPPGK-YTLEVRAKDNNGKWS 55 (66)
T ss_dssp SEEEESSTS---EEEEES--SEE-EEEEEEEEETTS-B-
T ss_pred eEEECCCCcE--EEEEEeCCCEE-EEEEEEEECCCCCcC
Confidence 8988753222 88899998885 999999999776543
No 457
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=74.09 E-value=0.97 Score=35.15 Aligned_cols=20 Identities=25% Similarity=0.200 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHheeeEE
Q psy574 778 IALLTSMVAVMALLFLAMFF 797 (977)
Q Consensus 778 i~~v~~~~~lll~i~~~~~~ 797 (977)
|+++++++++.++++++++|
T Consensus 15 IaG~Vvgll~ailLIlf~iy 34 (64)
T PF01034_consen 15 IAGGVVGLLFAILLILFLIY 34 (64)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 458
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=72.95 E-value=0.54 Score=39.24 Aligned_cols=30 Identities=7% Similarity=0.082 Sum_probs=12.0
Q ss_pred ccccccchhhhHHHHHHHHHHHHheeeEEE
Q psy574 769 GAWLSAPWFIALLTSMVAVMALLFLAMFFV 798 (977)
Q Consensus 769 ~~~~~~~~~i~~v~~~~~lll~i~~~~~~~ 798 (977)
.......|.....++.++++++++.++++|
T Consensus 35 tS~~~ayWpyLA~GGG~iLilIii~Lv~CC 64 (98)
T PF07204_consen 35 TSSFVAYWPYLAAGGGLILILIIIALVCCC 64 (98)
T ss_pred eehHHhhhHHhhccchhhhHHHHHHHHHHh
Confidence 333444565544333333333333333333
No 459
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=70.97 E-value=1.1 Score=41.70 Aligned_cols=14 Identities=36% Similarity=0.615 Sum_probs=6.6
Q ss_pred HHHheeeEEEEeec
Q psy574 789 ALLFLAMFFVRRRT 802 (977)
Q Consensus 789 l~i~~~~~~~~rr~ 802 (977)
++++++++||+|++
T Consensus 65 ~il~lvf~~c~r~k 78 (154)
T PF04478_consen 65 GILALVFIFCIRRK 78 (154)
T ss_pred HHHHhheeEEEecc
Confidence 33444455555553
No 460
>PLN02533 probable purple acid phosphatase
Probab=70.95 E-value=12 Score=42.92 Aligned_cols=84 Identities=7% Similarity=0.067 Sum_probs=51.0
Q ss_pred eEEEEEeeEeCCCeEEEEEEecCCCccceEEEEEEecCCCCCceEE----EE-----eecCccceEEECCCCCCcEEEEE
Q psy574 546 LIELTEVKPMTSTSVKLTWEILNTDYIEGVYIYSRGLDPPASVAML----TV-----LHAGEASGFLVTGLAHYSRYEFF 616 (977)
Q Consensus 546 ~~~~l~~~~~~~tsv~lsW~~p~~~~i~~Y~v~y~~~~~~~~~~~~----~~-----~~~~~~~~~~i~~L~p~t~Y~~~ 616 (977)
.|..+++.-.+.++++|+|.-.... .-.|+|-.....-..... .. ..+.-.+.+.|++|+|+|.|..+
T Consensus 43 ~P~qvhls~~~~~~m~V~W~T~~~~---~~~V~yG~~~~~l~~~a~g~~~~~~~~~~~~~g~iH~v~l~~L~p~T~Y~Yr 119 (427)
T PLN02533 43 HPDQVHISLVGPDKMRISWITQDSI---PPSVVYGTVSGKYEGSANGTSSSYHYLLIYRSGQINDVVIGPLKPNTVYYYK 119 (427)
T ss_pred CCceEEEEEcCCCeEEEEEECCCCC---CCEEEEecCCCCCcceEEEEEEEEeccccccCCeEEEEEeCCCCCCCEEEEE
Confidence 3456777777789999999987321 134667554321111110 00 01123356899999999999999
Q ss_pred EEEeecceeCCCCCceEEeccC
Q psy574 617 LVPFFGSVDGKPSNLRAVRTLE 638 (977)
Q Consensus 617 V~a~n~~g~g~~s~~~~~~T~~ 638 (977)
|.. ...+....|+|..
T Consensus 120 vg~------~~~s~~~~F~T~p 135 (427)
T PLN02533 120 CGG------PSSTQEFSFRTPP 135 (427)
T ss_pred ECC------CCCccceEEECCC
Confidence 831 2235667888865
No 461
>PF15050 SCIMP: SCIMP protein
Probab=70.80 E-value=0.86 Score=39.87 Aligned_cols=35 Identities=17% Similarity=0.255 Sum_probs=20.6
Q ss_pred cchhhhHHHHHHHHHHHHheeeEEEEeeccccccc
Q psy574 774 APWFIALLTSMVAVMALLFLAMFFVRRRTLHAKKS 808 (977)
Q Consensus 774 ~~~~i~~v~~~~~lll~i~~~~~~~~rr~~~~k~~ 808 (977)
..|||..++++++-+++.++++|.||++.|+.|+-
T Consensus 7 nFWiiLAVaII~vS~~lglIlyCvcR~~lRqGkkw 41 (133)
T PF15050_consen 7 NFWIILAVAIILVSVVLGLILYCVCRWQLRQGKKW 41 (133)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Confidence 36777666655555556666666676655544443
No 462
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=70.53 E-value=1.2 Score=31.14 Aligned_cols=6 Identities=67% Similarity=1.054 Sum_probs=2.4
Q ss_pred EEEEee
Q psy574 796 FFVRRR 801 (977)
Q Consensus 796 ~~~~rr 801 (977)
++++||
T Consensus 33 ~~~~rR 38 (40)
T PF08693_consen 33 FFWYRR 38 (40)
T ss_pred heEEec
Confidence 333444
No 463
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=70.44 E-value=46 Score=28.40 Aligned_cols=72 Identities=24% Similarity=0.358 Sum_probs=46.6
Q ss_pred CCeEEeCCCceeecCC----CcEEEEEEEcc-CceEEEEECCEEcCCCCcEEEecCceEEEeccCCCCCeEEEEEEEcCC
Q psy574 293 PPVILFGPANQTLPLR----SEARLRCQVRG-EGSVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPH 367 (977)
Q Consensus 293 pp~i~~~p~~~~v~~g----~~~~L~C~~~~-~p~i~W~~~g~~l~~~~~~~~~~~~sl~I~~v~~~d~G~Y~C~a~n~~ 367 (977)
++.|..++....+... +...|.+.+.+ ...+.|+.||..+..... ...+. ..+...|.|+..+....
T Consensus 10 ~l~I~~P~~g~~~~~~~~~~~~~~l~l~a~~~~~~~~W~vdg~~~g~~~~-----~~~~~---~~~~~~G~h~l~vvD~~ 81 (89)
T PF06832_consen 10 PLRITSPPDGAVLALDPGIPERQPLVLKAAGGRGPVYWFVDGEPLGTTQP-----GHQLF---WQPDRPGEHTLTVVDAQ 81 (89)
T ss_pred CCEEEecCCCCEEEeCCCCCccceEEEEEeCCCCcEEEEECCEEcccCCC-----CCeEE---eCCCCCeeEEEEEEcCC
Confidence 5666666665554322 35667777777 679999999998833211 11222 23357899999999988
Q ss_pred CceEE
Q psy574 368 GSASW 372 (977)
Q Consensus 368 G~~~~ 372 (977)
|....
T Consensus 82 G~~~~ 86 (89)
T PF06832_consen 82 GRSAS 86 (89)
T ss_pred CCEEE
Confidence 87643
No 464
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=69.99 E-value=1 Score=39.25 Aligned_cols=14 Identities=14% Similarity=0.470 Sum_probs=0.0
Q ss_pred heeeEEEEeecccc
Q psy574 792 FLAMFFVRRRTLHA 805 (977)
Q Consensus 792 ~~~~~~~~rr~~~~ 805 (977)
++.|.|||||..++
T Consensus 41 liGCWYckRRSGYk 54 (118)
T PF14991_consen 41 LIGCWYCKRRSGYK 54 (118)
T ss_dssp --------------
T ss_pred HHhheeeeecchhh
Confidence 34566677766554
No 465
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=69.75 E-value=1.8 Score=49.78 Aligned_cols=29 Identities=21% Similarity=0.448 Sum_probs=15.9
Q ss_pred ccchhhhHHH--HHHHHHHHHheeeEEEEee
Q psy574 773 SAPWFIALLT--SMVAVMALLFLAMFFVRRR 801 (977)
Q Consensus 773 ~~~~~i~~v~--~~~~lll~i~~~~~~~~rr 801 (977)
+..|||++++ ++++++|++|++|++||+.
T Consensus 267 ~NlWII~gVlvPv~vV~~Iiiil~~~LCRk~ 297 (684)
T PF12877_consen 267 NNLWIIAGVLVPVLVVLLIIIILYWKLCRKN 297 (684)
T ss_pred CCeEEEehHhHHHHHHHHHHHHHHHHHhccc
Confidence 3477765544 3344445555666666554
No 466
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=69.38 E-value=0.86 Score=48.50 Aligned_cols=17 Identities=18% Similarity=0.497 Sum_probs=6.1
Q ss_pred HHHHHHHheeeEEEEee
Q psy574 785 VAVMALLFLAMFFVRRR 801 (977)
Q Consensus 785 ~~lll~i~~~~~~~~rr 801 (977)
+++|+|+++.++++.||
T Consensus 267 iIVLIMvIIYLILRYRR 283 (299)
T PF02009_consen 267 IIVLIMVIIYLILRYRR 283 (299)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 467
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=69.34 E-value=15 Score=39.64 Aligned_cols=57 Identities=21% Similarity=0.420 Sum_probs=34.5
Q ss_pred cEEEEEEEcc----CceEEEEEC---------C---EEcCCCCc-----------EEEecC-ceEEEe---ccCCCCCeE
Q psy574 310 EARLRCQVRG----EGSVQWWRG---------E---REVGSGPR-----------VNVTGD-GSLVLT---DVTKEDSGE 358 (977)
Q Consensus 310 ~~~L~C~~~~----~p~i~W~~~---------g---~~l~~~~~-----------~~~~~~-~sl~I~---~v~~~d~G~ 358 (977)
.++|+|.|.| ...+.|.++ | ..+..+.. +....+ +++++. .+...+...
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd~~~~~~~~~g~e~~e~~~n~d~e~ge~~~~~~~~pn~DggTfQ~~~~v~v~~~~~~~ 295 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNSEDFAPEYRYGRYYPELGRDTDYEPGEPGFPTNTKKDNDKNTFSSTPSVRVPTDMSNQ 295 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEecccccccccCCccccccccCCCccccccccccceeeCCCCCeeEEEEEEEeCCCCCCC
Confidence 5799999999 446899999 4 22211111 222336 365443 344556667
Q ss_pred EEEEEEcC
Q psy574 359 YTCVVKSP 366 (977)
Q Consensus 359 Y~C~a~n~ 366 (977)
|+|.+...
T Consensus 296 Y~C~V~Hs 303 (338)
T PHA02865 296 IVCVVFHS 303 (338)
T ss_pred cEEEEEeC
Confidence 99988754
No 468
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=67.73 E-value=40 Score=29.00 Aligned_cols=71 Identities=13% Similarity=0.200 Sum_probs=41.9
Q ss_pred EEEEEE-EecCCCCeEEEEEc--CeeeeecCCCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEE
Q psy574 206 AVFLCG-IEGSPPPSTFWMLE--GNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARAS 282 (977)
Q Consensus 206 v~L~C~-~~g~p~~~i~W~~~--g~~~~~~~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~ 282 (977)
+.-.|. +.|.|++.|+|.-+ |..-........+.+++.. .+.+......|.-..+ |++.........+..
T Consensus 23 ~VA~CiSa~GrPpa~ItW~t~l~G~~etq~~~~~~GT~TV~S------~y~lVPs~~~~gk~lT-CvV~h~~~~~~~~~~ 95 (98)
T cd05890 23 LVATCVSANGKPPSVVRWDTRLKGEAEFQEIRNQNGTVTVIS------RYRLVPSREAHKQKLT-CIVNYRNDRFTDSVT 95 (98)
T ss_pred EEEEEEcCCCcCCcEeEEEccCCCceeeeeeCCCCCCEEEEE------EEEEeECHHHcCCEeE-EEEEeccccccccEE
Confidence 455788 48899999999853 2211111122233343333 5666666777888888 998876554444444
Q ss_pred E
Q psy574 283 L 283 (977)
Q Consensus 283 l 283 (977)
|
T Consensus 96 L 96 (98)
T cd05890 96 L 96 (98)
T ss_pred e
Confidence 3
No 469
>TIGR03503 conserved hypothetical protein TIGR03503. This set of conserved hypothetical protein has a phylogenetic range that closely matches that of TIGR03501, a putative C-terminal protein targeting signal.
Probab=67.31 E-value=88 Score=34.60 Aligned_cols=27 Identities=4% Similarity=-0.384 Sum_probs=19.1
Q ss_pred eEEECCCCCCcEEEEEEEEeecceeCC
Q psy574 601 GFLVTGLAHYSRYEFFLVPFFGSVDGK 627 (977)
Q Consensus 601 ~~~i~~L~p~t~Y~~~V~a~n~~g~g~ 627 (977)
...+.-..+-..|.+.|.+.|....-.
T Consensus 174 T~~l~l~~~~G~Y~~~v~~~n~vF~R~ 200 (374)
T TIGR03503 174 TGEFNLDVAPGEYRPTYQSRNPVFLRE 200 (374)
T ss_pred EEEeeccCCCceEEEEEEEcCceEEEE
Confidence 344555667789999999988766543
No 470
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=66.64 E-value=1.5 Score=47.22 Aligned_cols=30 Identities=17% Similarity=0.413 Sum_probs=14.6
Q ss_pred hhHHHHHHHHHHHHheeeEEEEeecccccc
Q psy574 778 IALLTSMVAVMALLFLAMFFVRRRTLHAKK 807 (977)
Q Consensus 778 i~~v~~~~~lll~i~~~~~~~~rr~~~~k~ 807 (977)
+.++++++++|+|+++.++++.||++++|+
T Consensus 314 aSiIAIvvIVLIMvIIYLILRYRRKKKMkK 343 (353)
T TIGR01477 314 ASIIAILIIVLIMVIIYLILRYRRKKKMKK 343 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcchhHH
Confidence 334444555555555555554454444443
No 471
>PTZ00046 rifin; Provisional
Probab=66.33 E-value=1.5 Score=47.35 Aligned_cols=29 Identities=21% Similarity=0.415 Sum_probs=14.0
Q ss_pred hHHHHHHHHHHHHheeeEEEEeecccccc
Q psy574 779 ALLTSMVAVMALLFLAMFFVRRRTLHAKK 807 (977)
Q Consensus 779 ~~v~~~~~lll~i~~~~~~~~rr~~~~k~ 807 (977)
.++++++++|+|+++.++++.||+.++|+
T Consensus 320 SiiAIvVIVLIMvIIYLILRYRRKKKMkK 348 (358)
T PTZ00046 320 SIVAIVVIVLIMVIIYLILRYRRKKKMKK 348 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcchhHH
Confidence 34444455555555555554454444443
No 472
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=65.71 E-value=69 Score=27.57 Aligned_cols=81 Identities=22% Similarity=0.233 Sum_probs=49.5
Q ss_pred EeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceEEe---ccceEEEccCccCCCeEEEEEEEeCCeeEEE
Q psy574 103 IRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVL---PSRSLQLSDVRLEDAGEYVCEAENAVGKISA 179 (977)
Q Consensus 103 ~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~---~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~ 179 (977)
...|....|..|+++.+.|...=.-+..+-|.-.-. +.... .-..+.+.+++. | ..-.|.+.=......+
T Consensus 7 ~v~P~~~vV~~G~Sv~VNCStsC~~p~~~GLET~L~-----k~~~~~g~~W~~f~LsnV~~-d-s~~~C~~~C~g~Q~~~ 79 (91)
T PF03921_consen 7 RVSPEEPVVPPGGSVWVNCSTSCPQPEKIGLETSLS-----KTELDSGPQWKAFQLSNVTE-D-SSPLCFFNCSGEQSSA 79 (91)
T ss_dssp EEESSEEEEETTEEEEEEEEESSSS-SEEEEESSSE-----EEEEEEETTEEEEEEEEE-S-C-EEEEEEEEETTEEEEE
T ss_pred EEECCccEECCCCCEEEEEcCCCCCCCcceEEEecC-----CcccCCCCcEEEEEEEcccc-C-CeEEEEEEcCCeEEEe
Confidence 345777889999999999998422112334432211 11111 234678888885 4 5678998865456788
Q ss_pred EEEEEEeeCCe
Q psy574 180 SATLTVQMAPI 190 (977)
Q Consensus 180 ~~~L~V~~~p~ 190 (977)
.+.|+|+.+|.
T Consensus 80 ~~~ItVY~~Pe 90 (91)
T PF03921_consen 80 SANITVYKPPE 90 (91)
T ss_dssp EEEEEEEB--S
T ss_pred EEeeEEeCCCC
Confidence 99999998774
No 473
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=65.64 E-value=9.6 Score=33.56 Aligned_cols=25 Identities=24% Similarity=0.404 Sum_probs=10.8
Q ss_pred hhHHHHHHHHHHHHheeeEEEEeec
Q psy574 778 IALLTSMVAVMALLFLAMFFVRRRT 802 (977)
Q Consensus 778 i~~v~~~~~lll~i~~~~~~~~rr~ 802 (977)
+++++++|+++++.++..+++.|.|
T Consensus 66 i~lls~v~IlVily~IyYFVILRer 90 (101)
T PF06024_consen 66 ISLLSFVCILVILYAIYYFVILRER 90 (101)
T ss_pred HHHHHHHHHHHHHhhheEEEEEecc
Confidence 3444444444444444444444443
No 474
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=65.19 E-value=70 Score=26.81 Aligned_cols=38 Identities=18% Similarity=0.383 Sum_probs=25.7
Q ss_pred CCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEE
Q psy574 35 EPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVK 81 (977)
Q Consensus 35 ~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~ 81 (977)
.+.+.|+-.+..+ ......+.....+..|+|.+.|.|.
T Consensus 26 ~~~~~l~~~~~k~---------~~~~~~~~~~~~~~~d~G~w~C~a~ 63 (80)
T PF05790_consen 26 KPSLFLENPGKKS---------LETKKLVSTFTPTTEDSGTWVCTAS 63 (80)
T ss_dssp CEEEEEECSSCEE---------EEESSEEEEESBTCGGSEEEEEEEE
T ss_pred ChhheeeccCccc---------cccceEEEEecCCCCCCEEEEEEEc
Confidence 4567777555444 1213446677888899999999994
No 475
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=63.60 E-value=4.1 Score=38.04 Aligned_cols=16 Identities=13% Similarity=-0.162 Sum_probs=7.5
Q ss_pred HHHHheeeEEEEeecc
Q psy574 788 MALLFLAMFFVRRRTL 803 (977)
Q Consensus 788 ll~i~~~~~~~~rr~~ 803 (977)
.||++++++++.-..+
T Consensus 61 ~ill~il~lvf~~c~r 76 (154)
T PF04478_consen 61 PILLGILALVFIFCIR 76 (154)
T ss_pred HHHHHHHHhheeEEEe
Confidence 4455444444444443
No 476
>KOG1026|consensus
Probab=62.53 E-value=10 Score=45.48 Aligned_cols=157 Identities=20% Similarity=0.194 Sum_probs=91.9
Q ss_pred eEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceEE--eccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEEe
Q psy574 109 TTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSV--LPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQ 186 (977)
Q Consensus 109 ~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~--~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~ 186 (977)
..+..|..+++.|.+.+.|.+.+.|+.+........... -.+....+.+ +.|.++|..+.....+.+.+.
T Consensus 202 ~~v~~~~~~~~~c~~~~~~vp~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~--------~~c~~E~~~~~~~~~v~~~~~ 273 (774)
T KOG1026|consen 202 LTVEEGSSITLKCSQAGIPVPCHYWFPNCLASSNTNQTSSLCRSECEVLEN--------DLCIAENAVARSNPSILLVVD 273 (774)
T ss_pred hhhcccchheeeeecccCCCcceeeecccccccCCCcccccccccceeeec--------hhhHHHHhhhhcCceeeeEEe
Confidence 356788999999999999999999999876654321111 0111111111 899999998887777777777
Q ss_pred eCCeEEecCCCcEEeeCCeEEEEEEE---ecCCCCeEEEEEcCeeeeecCCCccccEEEEEccCCc-eEEEEeecccCCC
Q psy574 187 MAPIVRERPSDLRLEVGRDAVFLCGI---EGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGM-NLLKIQNVSRTAA 262 (977)
Q Consensus 187 ~~p~~~~~p~~~~v~~G~~v~L~C~~---~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~-s~L~I~~v~~~d~ 262 (977)
.++..........- .-.|.. .+.+.+...|..++..+.. .+...+... +. .-+....-+..+.
T Consensus 274 ~p~~~~~~~~~~~~------~~~C~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~t~s--~~~~C~~~~~~~h~~~ 340 (774)
T KOG1026|consen 274 LPKAEVLLCSPLSD------HHNCIPIGITANPGPALHWCYNGSGLNY-----RGTVCVTKS--GKEQCLPWNDPPHSHN 340 (774)
T ss_pred cccccccCCCCccc------cCceeeeeccCCCCCceeeeecCccceE-----ecccccccc--cCcCCcccCcCccccc
Confidence 65433222111100 123433 3566677889888765321 111111111 10 1333333356789
Q ss_pred CeEEEEEEEcCCCceeEEEEEEEEC
Q psy574 263 PLIILCLGVNAAGSDLARASLTVSG 287 (977)
Q Consensus 263 G~Y~~C~a~n~~g~~~~~~~l~V~~ 287 (977)
|.|+ |++.+..|.........+..
T Consensus 341 ~~~~-~~~e~~~g~~~~r~~g~~~~ 364 (774)
T KOG1026|consen 341 GNYT-LFPELPGGKNYCRNPGGFMS 364 (774)
T ss_pred Ccce-eeecccCccccccCcCcccc
Confidence 9999 99999888765554444443
No 477
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=62.26 E-value=7.7 Score=34.45 Aligned_cols=20 Identities=5% Similarity=0.172 Sum_probs=8.6
Q ss_pred hhHHHHHHHHHHHHheeeEE
Q psy574 778 IALLTSMVAVMALLFLAMFF 797 (977)
Q Consensus 778 i~~v~~~~~lll~i~~~~~~ 797 (977)
+.++++++++|++++.++.+
T Consensus 3 Ll~il~llLll~l~asl~~w 22 (107)
T PF15330_consen 3 LLGILALLLLLSLAASLLAW 22 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444333
No 478
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=59.64 E-value=3.2 Score=37.10 Aligned_cols=32 Identities=19% Similarity=0.184 Sum_probs=2.0
Q ss_pred cccchhhhHHHHHHHHHHHHheeeEEEEeecc
Q psy574 772 LSAPWFIALLTSMVAVMALLFLAMFFVRRRTL 803 (977)
Q Consensus 772 ~~~~~~i~~v~~~~~lll~i~~~~~~~~rr~~ 803 (977)
....|.|++.+..+++++.++..+++++|.|+
T Consensus 75 ~~l~~pi~~sal~v~lVl~llsg~lv~rrcrr 106 (129)
T PF12191_consen 75 FPLLWPILGSALSVVLVLALLSGFLVWRRCRR 106 (129)
T ss_dssp SSSS----------------------------
T ss_pred cceehhhhhhHHHHHHHHHHHHHHHHHhhhhc
Confidence 44566665555444444444444444444433
No 479
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=59.62 E-value=4.6 Score=35.12 Aligned_cols=14 Identities=36% Similarity=0.532 Sum_probs=7.2
Q ss_pred HHHheeeEEEEeec
Q psy574 789 ALLFLAMFFVRRRT 802 (977)
Q Consensus 789 l~i~~~~~~~~rr~ 802 (977)
|+.+++|+|++|||
T Consensus 82 lv~~l~w~f~~r~k 95 (96)
T PTZ00382 82 LVGFLCWWFVCRGK 95 (96)
T ss_pred HHHHHhheeEEeec
Confidence 34445556655543
No 480
>PF07353 Uroplakin_II: Uroplakin II; InterPro: IPR009952 This family contains uroplakin II, which is approximately 180 residues long and seems to be restricted to mammals. Uroplakin II is an integral membrane protein, and is one of the components of the apical plaques of mammalian urothelium formed by the asymmetric unit membrane - this is believed to play a role in strengthening the urothelial apical surface to prevent the cells from rupturing during bladder distension [].; GO: 0016044 cellular membrane organization, 0030176 integral to endoplasmic reticulum membrane
Probab=57.07 E-value=27 Score=32.69 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=19.4
Q ss_pred CeEEecCCCCCceEEEEEEEEcC
Q psy574 699 PTLLLTNLSAGIRYSVSLAATNR 721 (977)
Q Consensus 699 ~~~~l~~L~p~t~Y~~~V~A~~~ 721 (977)
..|.+.+|.||+.|.|+-...+.
T Consensus 102 saYqVtNL~pGTkY~isY~Vtkg 124 (184)
T PF07353_consen 102 SAYQVTNLQPGTKYYISYLVTKG 124 (184)
T ss_pred eeEEeeccCCCcEEEEEEEEecC
Confidence 46889999999999999887654
No 481
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=56.90 E-value=3.2 Score=37.60 Aligned_cols=12 Identities=33% Similarity=0.454 Sum_probs=7.3
Q ss_pred CccCCCCcccee
Q psy574 922 GLSHPGGGLTTA 933 (977)
Q Consensus 922 ~~~~~~~~~~~~ 933 (977)
.+.|+.--||+.
T Consensus 147 a~ah~~e~ytt~ 158 (189)
T PF05568_consen 147 ASAHPAEPYTTV 158 (189)
T ss_pred CccCccccceee
Confidence 355777666654
No 482
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=55.99 E-value=5 Score=47.76 Aligned_cols=19 Identities=32% Similarity=0.646 Sum_probs=10.5
Q ss_pred HHHHHheeeEEEEeecccc
Q psy574 787 VMALLFLAMFFVRRRTLHA 805 (977)
Q Consensus 787 lll~i~~~~~~~~rr~~~~ 805 (977)
+|+++++++||||||+.+.
T Consensus 286 vl~lL~vLl~yCrrkc~~~ 304 (807)
T PF10577_consen 286 VLILLCVLLCYCRRKCLKP 304 (807)
T ss_pred HHHHHHHHHHhhhcccCCc
Confidence 3344445566777766543
No 483
>PF14292 SusE: SusE outer membrane protein
Probab=55.70 E-value=1.1e+02 Score=27.95 Aligned_cols=70 Identities=13% Similarity=0.127 Sum_probs=41.7
Q ss_pred eEEEEecCcEEEEEeeCCCCCCCCe-eeeEEEEEEEecC---CcceEEEEecCCcCeEEec-----------CCCCCceE
Q psy574 648 TDPVLLNATSVLLKWKPPPVGTHNG-VIRTYQIIVGGGN---NSALINMTVSASTPTLLLT-----------NLSAGIRY 712 (977)
Q Consensus 648 v~~~~~~~~sv~v~W~~p~~~~~ng-~i~~Y~v~~~~~~---~~~~~~~~~~~~~~~~~l~-----------~L~p~t~Y 712 (977)
+.+...+...++++|+++ ..... ....|.|+....+ .............+++.++ |+.||...
T Consensus 37 i~L~~~~~~a~tftW~~~--~~~~~~a~v~Y~lq~~~~~~~F~~~~~~~~~~~~~~s~~~t~~eLN~~l~~~g~~~~~~~ 114 (122)
T PF14292_consen 37 IVLDEASDNAVTFTWTAA--DYGGPDAPVTYTLQFDKKGNDFSSPVEIVTTDNGSTSVSITVKELNSILLKLGLEPGEAG 114 (122)
T ss_pred EEecccCCceEEEEEECC--ccCCCCCceEEEEEEeccCCCccCcEEEEeecCcceeEEecHHHHHHHHHHcCCCCCceE
Confidence 333334557899999998 44333 5668999887744 2222111111123555543 68899988
Q ss_pred EEEEEEE
Q psy574 713 SVSLAAT 719 (977)
Q Consensus 713 ~~~V~A~ 719 (977)
.+.+|..
T Consensus 115 ~l~~rV~ 121 (122)
T PF14292_consen 115 TLYWRVK 121 (122)
T ss_pred EEEEEEE
Confidence 8888753
No 484
>PF15065 NCU-G1: Lysosomal transcription factor, NCU-G1
Probab=55.13 E-value=3.3e+02 Score=30.10 Aligned_cols=24 Identities=13% Similarity=0.247 Sum_probs=12.9
Q ss_pred ccceEEECCCCCCc---EEEEEEEEee
Q psy574 598 EASGFLVTGLAHYS---RYEFFLVPFF 621 (977)
Q Consensus 598 ~~~~~~i~~L~p~t---~Y~~~V~a~n 621 (977)
.+-.+.|.|+.+.. ++-+.+.+..
T Consensus 157 tq~dv~L~~~~~~~n~SRFaLEl~~v~ 183 (350)
T PF15065_consen 157 TQVDVVLDGVTPRGNNSRFALELLTVG 183 (350)
T ss_pred eEEEEEEeCcEecCCCcceEEEEEEec
Confidence 33456677776544 4445555543
No 485
>KOG1026|consensus
Probab=54.79 E-value=22 Score=42.75 Aligned_cols=159 Identities=18% Similarity=0.230 Sum_probs=89.1
Q ss_pred ceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecCceeeeEeEE
Q psy574 14 SQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAV 93 (977)
Q Consensus 14 ~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~~~ 93 (977)
...+..|..+++.|.. .+.|.+.+.|+.++.........+ .+-.+-...+.+ +.|.++|..+... ..+.
T Consensus 201 ~~~v~~~~~~~~~c~~-~~~~vp~~~~~~~~~~~~~~~~~~-~~c~~~~~~~~~--------~~c~~E~~~~~~~-~~v~ 269 (774)
T KOG1026|consen 201 NLTVEEGSSITLKCSQ-AGIPVPCHYWFPNCLASSNTNQTS-SLCRSECEVLEN--------DLCIAENAVARSN-PSIL 269 (774)
T ss_pred hhhhcccchheeeeec-ccCCCcceeeecccccccCCCccc-ccccccceeeec--------hhhHHHHhhhhcC-ceee
Confidence 3567889999999999 899999999998776663322111 111111111111 8899998877543 2345
Q ss_pred EEEEcCCeEEeCCCceEEeCCCeEEEEEEe---cccCceEEEEEECCeeCCCCc-eEE--ecc-ceEEEccCccCCCeEE
Q psy574 94 LRVLVKPYIIRGPKDTTVSASSIIVFECSV---GGDAVLTVHWKRLGSAMPEDR-MSV--LPS-RSLQLSDVRLEDAGEY 166 (977)
Q Consensus 94 l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v---~g~p~~~i~W~k~~~~l~~~~-~~~--~~~-~~L~I~~v~~~D~G~Y 166 (977)
+.+..++.......... + .-.|.. .++|.+...|..++..+...+ ... ... .-+....-+-.+.|.|
T Consensus 270 ~~~~~p~~~~~~~~~~~----~--~~~C~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~t~s~~~~C~~~~~~~h~~~~~~ 343 (774)
T KOG1026|consen 270 LVVDLPKAEVLLCSPLS----D--HHNCIPIGITANPGPALHWCYNGSGLNYRGTVCVTKSGKEQCLPWNDPPHSHNGNY 343 (774)
T ss_pred eEEecccccccCCCCcc----c--cCceeeeeccCCCCCceeeeecCccceEecccccccccCcCCcccCcCcccccCcc
Confidence 55555443222211100 0 223332 467778888988876542111 001 111 2223333356678999
Q ss_pred EEEEEeCCeeEEEEEEEEEeeCC
Q psy574 167 VCEAENAVGKISASATLTVQMAP 189 (977)
Q Consensus 167 ~C~a~n~~g~~~~~~~L~V~~~p 189 (977)
+|.+.+..|.........+...|
T Consensus 344 ~~~~e~~~g~~~~r~~g~~~~~P 366 (774)
T KOG1026|consen 344 TLFPELPGGKNYCRNPGGFMSRP 366 (774)
T ss_pred eeeecccCccccccCcCccccCC
Confidence 99999988876555544444333
No 486
>PHA03240 envelope glycoprotein M; Provisional
Probab=54.40 E-value=23 Score=34.83 Aligned_cols=67 Identities=28% Similarity=0.399 Sum_probs=44.2
Q ss_pred ceEEeCCCcEEEEEECCCCCCCCeEEEEe--------CC---EEee---c---CC---------CceEEEe-cCcEEEEc
Q psy574 14 SQRVAAGDTALLECGPPRGHPEPTLVWKK--------NG---HPID---F---EN---------SKRLRLV-DGTNLAIQ 66 (977)
Q Consensus 14 ~~~v~~G~~v~L~C~~~~g~P~~~v~W~k--------~g---~~l~---~---~~---------~~r~~~~-~~g~L~I~ 66 (977)
++.+.+|++|+|.-.- .-+|...+.|++ +| ..|- . +. ..++... .+.+|.|-
T Consensus 32 evt~r~G~nVTLga~~-~lhpgq~v~Wy~~~c~~~~G~G~~~~plC~Ytppk~~r~ktl~~t~~nt~i~y~C~NstL~i~ 110 (258)
T PHA03240 32 EHTTREGDPLLLGGGH-GLGAGQKAHWYKHKCDGITGNGDKLHPICTYDPPKNGKGKTLDESAENSFILYECHNSTLIIA 110 (258)
T ss_pred ecccccCCceeeCCcc-cCCCCCEEEEEeeecccccCCCCCCceeEEecCCccccccccccccCCCceEEEeccceEEEE
Confidence 5789999999998644 446888999998 11 2221 1 00 1112111 35789999
Q ss_pred CCCCCCCeEEEEEEEe
Q psy574 67 DSRKTDDGRYQCVVKN 82 (977)
Q Consensus 67 ~v~~~D~G~Y~C~a~n 82 (977)
++..+|.|+| |+-.+
T Consensus 111 ~vn~sd~~nY-cr~k~ 125 (258)
T PHA03240 111 HLNLSDAGEY-CRKKC 125 (258)
T ss_pred EEeecCcchh-hhccC
Confidence 9999999999 55443
No 487
>KOG1225|consensus
Probab=54.37 E-value=37 Score=39.30 Aligned_cols=111 Identities=16% Similarity=0.121 Sum_probs=70.1
Q ss_pred eecCcCeEEEEccCCCCeEEEEEEEEcC-CCCCCCCCCCceEEeeccccccccccCCcceeecCCCCCCCcchHHHHhhc
Q psy574 460 TNVPSPILTVTNLTVGLTYTFLVRALNS-HGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQH 538 (977)
Q Consensus 460 ~~~~~~~~~i~~L~p~t~Y~~~V~a~n~-~G~s~~S~~s~~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~g~~~~~~~~~ 538 (977)
.......+.+..|.|++.|..+++++-. .|....+ .+....+ .. +
T Consensus 413 ~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~-~~~~~~~--~~----------------~--------------- 458 (525)
T KOG1225|consen 413 VPGDANSVDIQGLEPGDEYNCSVNTVAANIGSLPKD-KSETTVL--CW----------------N--------------- 458 (525)
T ss_pred eccceeeeeeeeecCCcceeeehhhhhhhhccCCcc-cccceEe--ec----------------C---------------
Confidence 4556677889999999999999988643 2322221 1111111 01 1
Q ss_pred ccccCCceEEEEEeeEeCCCeEEEEEEecCCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEE
Q psy574 539 LQEGGGSLIELTEVKPMTSTSVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFL 617 (977)
Q Consensus 539 l~~~~~~~~~~l~~~~~~~tsv~lsW~~p~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V 617 (977)
..+.+.....+++.+.|..|... ..++.++|..... + ...........+.+..++|.|.+.|.+.+
T Consensus 459 ---------g~~~v~~~~~~s~e~~g~~~s~~-~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~l~~c~~~~~~~ 524 (525)
T KOG1225|consen 459 ---------GGLCVDGETESSLEVGGPCPSSG-TCGWEVRCGPCGN--D-GGVNAEPPPECTSYDRTGLGPCTEYEVSV 524 (525)
T ss_pred ---------CceeeeeeeeccccccCCCCCcc-ccceEEEeeecCc--c-cccccCCCCCCCCCCccCcccccceeccc
Confidence 23677888899999999998333 4567888833221 1 11122222366789999999999998875
No 488
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=54.00 E-value=4.3 Score=42.00 Aligned_cols=24 Identities=17% Similarity=0.451 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHheeeEEEEeecc
Q psy574 780 LLTSMVAVMALLFLAMFFVRRRTL 803 (977)
Q Consensus 780 ~v~~~~~lll~i~~~~~~~~rr~~ 803 (977)
+|++++.++|+|+-+|+|.|||+.
T Consensus 266 lvllil~vvliiLYiWlyrrRK~s 289 (295)
T TIGR01478 266 LVLIILTVVLIILYIWLYRRRKKS 289 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccc
Confidence 333444444444455555555544
No 489
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=53.61 E-value=16 Score=36.39 Aligned_cols=28 Identities=36% Similarity=0.371 Sum_probs=13.3
Q ss_pred chhhhHHHHH--HHHHHHHheeeEEEEeec
Q psy574 775 PWFIALLTSM--VAVMALLFLAMFFVRRRT 802 (977)
Q Consensus 775 ~~~i~~v~~~--~~lll~i~~~~~~~~rr~ 802 (977)
+.||++++.+ ++++++++.++|++.||.
T Consensus 100 ~~lI~lv~~g~~lLla~~~~~~Y~~~~Rrs 129 (202)
T PF06365_consen 100 PTLIALVTSGSFLLLAILLGAGYCCHQRRS 129 (202)
T ss_pred eEEEehHHhhHHHHHHHHHHHHHHhhhhcc
Confidence 4666666655 433333333334444443
No 490
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=53.45 E-value=1.4e+02 Score=25.36 Aligned_cols=55 Identities=18% Similarity=0.227 Sum_probs=33.9
Q ss_pred eEEEEEEecccCceEEEEEECCeeCCCCceEEeccceEEEccCccCCCeEEEEEEEeCCeeEE
Q psy574 116 IIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKIS 178 (977)
Q Consensus 116 ~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~ 178 (977)
...|.+.+.+. ...+.|+-|+..+.... ....+.+ .....|.|+..+....|...
T Consensus 31 ~~~l~l~a~~~-~~~~~W~vdg~~~g~~~----~~~~~~~---~~~~~G~h~l~vvD~~G~~~ 85 (89)
T PF06832_consen 31 RQPLVLKAAGG-RGPVYWFVDGEPLGTTQ----PGHQLFW---QPDRPGEHTLTVVDAQGRSA 85 (89)
T ss_pred cceEEEEEeCC-CCcEEEEECCEEcccCC----CCCeEEe---CCCCCeeEEEEEEcCCCCEE
Confidence 34444454444 33899999999983321 2223333 33567999999988777643
No 491
>PHA03189 UL14 tegument protein; Provisional
Probab=53.25 E-value=56 Score=34.34 Aligned_cols=74 Identities=22% Similarity=0.396 Sum_probs=42.8
Q ss_pred cccceEEeCCCcEEEEEECCCC-CCCCeEE-----EEe----------CCEEeecCC-----CceEEEecCc---EEEEc
Q psy574 11 QPKSQRVAAGDTALLECGPPRG-HPEPTLV-----WKK----------NGHPIDFEN-----SKRLRLVDGT---NLAIQ 66 (977)
Q Consensus 11 ~p~~~~v~~G~~v~L~C~~~~g-~P~~~v~-----W~k----------~g~~l~~~~-----~~r~~~~~~g---~L~I~ 66 (977)
.|....+..|+.+++.|.++.. =|...|. |-- +|..+..+. ..+..+.+-| .|.++
T Consensus 58 spAP~l~pyGdrvtVpC~fp~H~WPevsIrarfCys~e~s~eLv~da~~G~~l~ndl~~~L~~~~W~Fedlg~aq~ltLt 137 (348)
T PHA03189 58 SPAPLLVPYGDRVTVPCTFPTHDWPEVSIRARFCYSPERSRELVVDADSGGELHNDLTYRLPEASWKFEDLGAAQRLTLT 137 (348)
T ss_pred CCCccccCCCceeeeeeeecCCCCceeeEEEEEeeccccceEEEEEcccCCEeccccceecccceeeeecccceeEEEEE
Confidence 3667889999999999998332 2443332 311 233332211 1233333333 13222
Q ss_pred -CCCCCCCeEEEEEEEecC
Q psy574 67 -DSRKTDDGRYQCVVKNVA 84 (977)
Q Consensus 67 -~v~~~D~G~Y~C~a~n~~ 84 (977)
++..+.+|+|.|+..|..
T Consensus 138 F~v~t~taG~Y~CvLrN~t 156 (348)
T PHA03189 138 FRVSTSTAGMYECVLRNET 156 (348)
T ss_pred EEEEecccceEEEEecccc
Confidence 566778999999999864
No 492
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=53.04 E-value=15 Score=34.01 Aligned_cols=24 Identities=4% Similarity=0.054 Sum_probs=11.6
Q ss_pred hhHHHHHHHHHHHHheeeEEEEee
Q psy574 778 IALLTSMVAVMALLFLAMFFVRRR 801 (977)
Q Consensus 778 i~~v~~~~~lll~i~~~~~~~~rr 801 (977)
++++.++++|+++.+.++++|++|
T Consensus 13 ~igi~Ll~lLl~cgiGcvwhwkhr 36 (158)
T PF11770_consen 13 SIGISLLLLLLLCGIGCVWHWKHR 36 (158)
T ss_pred HHHHHHHHHHHHHhcceEEEeecc
Confidence 333334444445555555555554
No 493
>PF02010 REJ: REJ domain; InterPro: IPR002859 The REJ (Receptor for Egg Jelly) domain is found in PKD1 P98161 from SWISSPROT and the sperm receptor for egg jelly Q26627 from SWISSPROT. The exact function of this domain is unknown. The domain is 600 amino acids long so is probably composed of multiple structural domains. There are six completely conserved cysteine residues that may form disulphide bridges. This region contains tandem PKD-like domains. Sequence similarity between a region of the autosomal dominant polycystic kidney disease (ADPKD) protein, polycystin-1 and a sea urchin sperm glycoprotein involved in fertilization, the receptor for egg jelly (suREJ) has been known for some time. The suREJ protein binds the glycoprotein coat of the egg (egg jelly), triggering the acrosome reaction, which transforms the sperm into a fusogenic cell. The sequence similarity and expression pattern suggests that the predicted human PKDREJ protein is a mammalian equivalent of the suREJ protein and therefore may have a central role in human fertilization [].; PDB: 2E7M_A 2YRL_A.
Probab=51.23 E-value=25 Score=40.51 Aligned_cols=278 Identities=18% Similarity=0.172 Sum_probs=26.8
Q ss_pred cEEEEEECCCCCCCCeEEEEeCCE---EeecCCCceEEEecCcEEEEcCCCC-CCCeEEEEEEE--ecCceeeeEeEEEE
Q psy574 22 TALLECGPPRGHPEPTLVWKKNGH---PIDFENSKRLRLVDGTNLAIQDSRK-TDDGRYQCVVK--NVAGTRESTDAVLR 95 (977)
Q Consensus 22 ~v~L~C~~~~g~P~~~v~W~k~g~---~l~~~~~~r~~~~~~g~L~I~~v~~-~D~G~Y~C~a~--n~~g~~~s~~~~l~ 95 (977)
.+.|.|.. .-...+.|..-.. ........ ......|.|..... .-...|...+. +..+......+.|.
T Consensus 2 ~~~~~C~~---~~~~~y~W~~~~~~~~~~~~~~~~---~~~~~~l~ip~~~L~~G~y~~~~~Vt~~~~~~~~~~~~~~v~ 75 (440)
T PF02010_consen 2 HVSLNCND---ASTVTYNWTVFSGPSNSIVQDMDN---SSNTPQLTIPPYTLPPGDYTFTLTVTASSNPGLSSTDSVTVT 75 (440)
T ss_dssp -----------------BEEEEES-TT-EEESTTT-----SSSECEEECES--SCEEEEEEEEE--BCTTEEEEEEEEEE
T ss_pred Cccccccc---ccceEEEEEEEecCCcCccccccc---cCCceEEEeCcccCCCCCEEEEEEEEEECCCCceEEEEEEEE
Confidence 36678933 2346788985211 11011111 12234677776554 22346677776 33344456667777
Q ss_pred EEcCCeEEeC--CCceEEeCCCeEEEEEEecccC-------ceEEEEEECCeeCCC--------CceEEeccceEEEccC
Q psy574 96 VLVKPYIIRG--PKDTTVSASSIIVFECSVGGDA-------VLTVHWKRLGSAMPE--------DRMSVLPSRSLQLSDV 158 (977)
Q Consensus 96 V~~~P~~~~~--p~~~~v~~G~~v~l~C~v~g~p-------~~~i~W~k~~~~l~~--------~~~~~~~~~~L~I~~v 158 (977)
|...|..... .....+..++.+.|.....-+| ...+.|.-....-.. ..........|.|..-
T Consensus 76 V~~s~l~~~I~gG~~~~~~~~~~i~ldgs~S~Dpd~~~~~~~l~y~W~C~~~~~~~~C~~~~~~~~~~~~~~~~l~i~~~ 155 (440)
T PF02010_consen 76 VEPSPLVAVIKGGSSRTVGYNSDITLDGSQSYDPDGPPGDSGLTYSWSCTDLSSNSACSTPSTNITLLNSSSSSLTIPAS 155 (440)
T ss_dssp EE------------------------------------------------------------------------------
T ss_pred EeeccceeEEcCCccceeecCceEEEeeEEEecccccccCCceEEEEEEeCCceeccccccccccccCCCCCEEEEEEhH
Confidence 7765533322 2233444456777776553343 246788665432220 0011123455666443
Q ss_pred ccCCCeEEEEEEE--eCCe-eEEEEEEEEEe--eCCeEEecCC---CcEEeeCCeEEEEEEEecC----CCCeEEEEE--
Q psy574 159 RLEDAGEYVCEAE--NAVG-KISASATLTVQ--MAPIVRERPS---DLRLEVGRDAVFLCGIEGS----PPPSTFWML-- 224 (977)
Q Consensus 159 ~~~D~G~Y~C~a~--n~~g-~~~~~~~L~V~--~~p~~~~~p~---~~~v~~G~~v~L~C~~~g~----p~~~i~W~~-- 224 (977)
...-.-.|...+. ...+ .......+.|. .+|.+.+... ...+..++.+.|...+.+. ....+.|..
T Consensus 156 ~l~~~~~y~f~ltv~k~~r~s~s~~~~v~v~~~~~p~v~I~~~~n~~~~vn~~~~l~L~~~~~~~~~~~~~~~y~Wsl~~ 235 (440)
T PF02010_consen 156 TLSPGSTYTFTLTVSKGSRSSSSASQTVTVVSGDPPTVSISCVSNCKGKVNPSERLVLQASCSSCDSDSSNVSYSWSLFS 235 (440)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HcCCCceEEEEEEEEeCCCCceeeEEEEEeccCCCCceeEccccccccccCCCCCEEEEEEEeCCCCcCCCEEEEEEEee
Confidence 3322222655554 3322 23334444443 3444433322 2247788888777665532 234677887
Q ss_pred ---c---CeeeeecCCCccccEEEEEccCCceEEEEeecccCCCCeEEE-EEEEcCCCce-eEEEEEEEECCCCCCCCe-
Q psy574 225 ---E---GNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIIL-CLGVNAAGSD-LARASLTVSGPDPNPPPV- 295 (977)
Q Consensus 225 ---~---g~~~~~~~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~-C~a~n~~g~~-~~~~~l~V~~~~~~~pp~- 295 (977)
. ...+.. ........ .....|.|..-.......|.+ +.+....+.. .+...+.+.. ||.
T Consensus 236 ~~~~~~~~~~~~~-----~~~~~~~~--~~~~~Lvi~~~~l~~g~~Y~~~l~v~~~~~~~~~a~~~~~~n~-----pP~~ 303 (440)
T PF02010_consen 236 LDGVSDSNSELPD-----WSSMTTTG--SSSSNLVIDPGVLEPGSTYTFRLTVTDSSGSSGSASISFTVNA-----PPSG 303 (440)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccc-----cccccccc--ccccccccccccccccccccccccccccccccccccccccccc-----cccc
Confidence 0 111100 00000011 112366776554555556651 3444443332 4444555543 332
Q ss_pred --EEeCCCceeecCCCcEEEEEEEc
Q psy574 296 --ILFGPANQTLPLRSEARLRCQVR 318 (977)
Q Consensus 296 --i~~~p~~~~v~~g~~~~L~C~~~ 318 (977)
+...|..- ......+.+.|...
T Consensus 304 g~c~v~P~~G-~al~T~Ft~~c~~~ 327 (440)
T PF02010_consen 304 GSCSVSPSSG-YALETTFTITCSGW 327 (440)
T ss_dssp -------------------------
T ss_pred cccccccccc-cccccccccccccc
Confidence 33333322 44456788888655
No 494
>PTZ00370 STEVOR; Provisional
Probab=49.32 E-value=4.9 Score=41.71 Aligned_cols=26 Identities=23% Similarity=0.461 Sum_probs=13.2
Q ss_pred hHHHHHHHHHHHHheeeEEEEeeccc
Q psy574 779 ALLTSMVAVMALLFLAMFFVRRRTLH 804 (977)
Q Consensus 779 ~~v~~~~~lll~i~~~~~~~~rr~~~ 804 (977)
++|++++.++|+|+-+|+|.|||+..
T Consensus 261 alvllil~vvliilYiwlyrrRK~sw 286 (296)
T PTZ00370 261 ALVLLILAVVLIILYIWLYRRRKNSW 286 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcchh
Confidence 34444444445555556666665543
No 495
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=48.84 E-value=4.1 Score=36.93 Aligned_cols=21 Identities=10% Similarity=0.412 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHheeeEEEEee
Q psy574 781 LTSMVAVMALLFLAMFFVRRR 801 (977)
Q Consensus 781 v~~~~~lll~i~~~~~~~~rr 801 (977)
+++++++|++++.++.-.+||
T Consensus 74 ~aGvIg~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 74 MAGVIGIILLISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 334444444444444444444
No 496
>PHA03283 envelope glycoprotein E; Provisional
Probab=48.18 E-value=1e+02 Score=35.20 Aligned_cols=39 Identities=18% Similarity=0.086 Sum_probs=32.7
Q ss_pred ccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEEee
Q psy574 149 PSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQM 187 (977)
Q Consensus 149 ~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~~ 187 (977)
..+.|+|.+++.+++|.|+-...+..+.....+.|+|..
T Consensus 132 ~~~~l~I~~at~~~aGVYtly~r~d~~~~~~vflvtVk~ 170 (542)
T PHA03283 132 ERSVLQIQRATPNIAGVYTLHVSSDGMMKHSVFFVTVKK 170 (542)
T ss_pred CCCeeEEEecccccCeEEEEEecCCCceEEEEEEEEecC
Confidence 346799999999999999999998777666777788875
No 497
>PF14292 SusE: SusE outer membrane protein
Probab=47.02 E-value=1.9e+02 Score=26.34 Aligned_cols=66 Identities=9% Similarity=0.115 Sum_probs=39.0
Q ss_pred eeEeCCCeEEEEEEec--CCC-ccceEEEEEEecCCCCCce-EEEEeecC-ccceEEEC-----------CCCCCcEEEE
Q psy574 552 VKPMTSTSVKLTWEIL--NTD-YIEGVYIYSRGLDPPASVA-MLTVLHAG-EASGFLVT-----------GLAHYSRYEF 615 (977)
Q Consensus 552 ~~~~~~tsv~lsW~~p--~~~-~i~~Y~v~y~~~~~~~~~~-~~~~~~~~-~~~~~~i~-----------~L~p~t~Y~~ 615 (977)
....+...++++|+.+ ... ....|.|+....+. ++. ...+.... ...++.++ ++.|+....+
T Consensus 39 L~~~~~~a~tftW~~~~~~~~~a~v~Y~lq~~~~~~--~F~~~~~~~~~~~~~~s~~~t~~eLN~~l~~~g~~~~~~~~l 116 (122)
T PF14292_consen 39 LDEASDNAVTFTWTAADYGGPDAPVTYTLQFDKKGN--DFSSPVEIVTTDNGSTSVSITVKELNSILLKLGLEPGEAGTL 116 (122)
T ss_pred ecccCCceEEEEEECCccCCCCCceEEEEEEeccCC--CccCcEEEEeecCcceeEEecHHHHHHHHHHcCCCCCceEEE
Confidence 3335667999999999 222 45689999887653 111 11111111 13444544 5788888777
Q ss_pred EEEE
Q psy574 616 FLVP 619 (977)
Q Consensus 616 ~V~a 619 (977)
.+|.
T Consensus 117 ~~rV 120 (122)
T PF14292_consen 117 YWRV 120 (122)
T ss_pred EEEE
Confidence 7764
No 498
>PHA03281 envelope glycoprotein E; Provisional
Probab=46.75 E-value=1.8e+02 Score=33.32 Aligned_cols=39 Identities=10% Similarity=0.120 Sum_probs=30.1
Q ss_pred CcEEEEcCCCCCCCeEEEEEEEecCceeeeEeEEEEEEc
Q psy574 60 GTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLV 98 (977)
Q Consensus 60 ~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V~~ 98 (977)
.+.|.|.+++..++|.|+-......|......+.|+|..
T Consensus 297 ~~vL~I~nAT~~naGVYtly~rg~~G~s~~svfLVtVkg 335 (642)
T PHA03281 297 PGVLKFEHMEAHHAGVYIWNLQGSDGENMYATFLVKLKG 335 (642)
T ss_pred CCeeEEEecccccceeEEEEecCCCCcceeEEEEEEecC
Confidence 467999999999999999888765564444456677764
No 499
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=45.11 E-value=70 Score=27.59 Aligned_cols=71 Identities=18% Similarity=0.279 Sum_probs=0.0
Q ss_pred CeEEEEEEe-cccCceEEEEEEC------CeeCCCCceEEeccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy574 115 SIIVFECSV-GGDAVLTVHWKRL------GSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTV 185 (977)
Q Consensus 115 ~~v~l~C~v-~g~p~~~i~W~k~------~~~l~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V 185 (977)
..+.-.|.+ .|.|+..|+|.-+ -......+..+.-.+.+.+-.....|.-.-+|++.........++.|.|
T Consensus 21 ~v~VA~CiSa~GrPpa~ItW~t~l~G~~etq~~~~~~GT~TV~S~y~lVPs~~~~gk~lTCvV~h~~~~~~~~~~L~v 98 (98)
T cd05890 21 KMLVATCVSANGKPPSVVRWDTRLKGEAEFQEIRNQNGTVTVISRYRLVPSREAHKQKLTCIVNYRNDRFTDSVTLNV 98 (98)
T ss_pred eEEEEEEEcCCCcCCcEeEEEccCCCceeeeeeCCCCCCEEEEEEEEEeECHHHcCCEeEEEEEeccccccccEEecC
No 500
>KOG0200|consensus
Probab=44.50 E-value=1.8e+02 Score=35.19 Aligned_cols=195 Identities=19% Similarity=0.168 Sum_probs=0.0
Q ss_pred EEecCcEEEEcCCCCCCCeEEEEEEEecCceeeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEE
Q psy574 56 RLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKR 135 (977)
Q Consensus 56 ~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k 135 (977)
.....+.+.+..+...|.|.|+|.+.+ ........ ......+-.....+.......+....+ +...+.+.+.|.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~y~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 82 (609)
T KOG0200|consen 8 TRINHWFLIIDSVVPGDKGFYTCLVSN-INLIISLD-DIVIHRPILLAGENANPNTVVTVGVPL---AFSIPQPFIKWGT 82 (609)
T ss_pred eeeccceEEEEEEEecCCccEEEEEec-CceeeEee-cccCcccccccCCCCCcceeeccccee---eeecCCCcceeee
Q ss_pred CC------eeCCCCceEEe-------------ccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEEeeCCeEEecCC
Q psy574 136 LG------SAMPEDRMSVL-------------PSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERPS 196 (977)
Q Consensus 136 ~~------~~l~~~~~~~~-------------~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~~~p~~~~~p~ 196 (977)
.. ........... ....+.+.++...+.|.|.|...+..+.......+.+..........
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 161 (609)
T KOG0200|consen 83 NLEIECEDGLFEYKTKKTLSFVEIEYNRLVDGTFESGLIYNVSLTEAGEYLCWTGRTVGDGPNKAFLEVSKSLKAQKSE- 161 (609)
T ss_pred eecccccccCcchhheeeeeeeeccccccccCceEeeeeeccChhhcceeeccCCCcccccccceEEeccccccccccc-
Q ss_pred CcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCc
Q psy574 197 DLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGS 276 (977)
Q Consensus 197 ~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~ 276 (977)
.+....+.|...........+.+-..... .+.+..+... +. |.+.+..+.
T Consensus 162 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~----~~-~~~~~~~~~ 211 (609)
T KOG0200|consen 162 -----EGDTVRLTCSIPHDEINWKVSWRFENSKS--------------------LLKISVITLN----LI-CKVRNITKL 211 (609)
T ss_pred -----ccCCccccccccccccceeccceeccccc--------------------eeEEEeeccc----eE-EEEEeeccc
Q ss_pred eeEEEEEEEE
Q psy574 277 DLARASLTVS 286 (977)
Q Consensus 277 ~~~~~~l~V~ 286 (977)
......+.+.
T Consensus 212 ~~~~~~~~~~ 221 (609)
T KOG0200|consen 212 FTGEYTCVVK 221 (609)
T ss_pred cccceeEEee
Done!