Query psy574
Match_columns 977
No_of_seqs 494 out of 3689
Neff 9.5
Searched_HMMs 29240
Date Fri Aug 16 16:48:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy574.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/574hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b43_A Titin; I-SET IG fold, e 100.0 4.6E-44 1.6E-48 427.9 55.8 445 4-491 4-466 (570)
2 3b43_A Titin; I-SET IG fold, e 100.0 3.4E-44 1.2E-48 429.0 53.6 447 4-491 100-560 (570)
3 2v5y_A Receptor-type tyrosine- 100.0 1.2E-42 4.2E-47 428.1 40.7 541 114-737 91-703 (731)
4 3laf_A Deleted in colorectal c 100.0 8.5E-42 2.9E-46 390.3 39.1 364 4-381 20-402 (403)
5 1e07_A Carcinoembryonic antige 100.0 9.6E-39 3.3E-43 388.3 66.1 608 7-734 1-639 (642)
6 3kld_A Contactin 4, axcam, BIG 100.0 7.1E-41 2.4E-45 379.9 36.5 358 4-379 4-382 (384)
7 2v5y_A Receptor-type tyrosine- 100.0 3.2E-40 1.1E-44 406.4 44.7 447 203-739 91-565 (731)
8 2jll_A NCAM2, neural cell adhe 100.0 1.2E-38 4E-43 362.5 49.6 377 188-738 1-387 (389)
9 1cs6_A Axonin-1; neural cell a 100.0 1.1E-39 3.8E-44 370.0 36.4 356 3-379 2-381 (382)
10 3dmk_A DOWN syndrome cell adhe 100.0 1.2E-38 4E-43 398.7 45.9 631 5-732 38-710 (816)
11 1bih_A Hemolin; insect immunit 100.0 9.2E-40 3.2E-44 372.3 31.4 360 5-378 6-394 (395)
12 2v5m_A Dscam; neurobiology SPL 100.0 1.2E-39 4.2E-44 370.4 31.4 354 5-378 3-387 (388)
13 1e07_A Carcinoembryonic antige 100.0 1.1E-36 3.8E-41 370.2 58.9 333 14-379 120-463 (642)
14 3dmk_A DOWN syndrome cell adhe 100.0 2.4E-38 8.4E-43 395.8 42.3 359 4-382 137-528 (816)
15 3p3y_A Neurofascin; IG domains 100.0 7.5E-39 2.6E-43 365.9 31.5 359 5-379 16-402 (404)
16 2ocw_A Polymeric-immunoglobuli 100.0 2.9E-36 1E-40 362.3 49.8 451 10-493 5-537 (585)
17 2ec8_A MAST/stem cell growth f 100.0 7.2E-38 2.5E-42 370.9 34.6 383 6-422 37-444 (524)
18 3qs7_E FL cytokine receptor; i 100.0 9.2E-38 3.1E-42 357.2 33.6 352 7-381 50-415 (423)
19 3qs9_E FL cytokine receptor; i 100.0 3.4E-37 1.2E-41 362.0 32.8 379 10-422 53-445 (527)
20 2ec8_A MAST/stem cell growth f 100.0 1.5E-37 5.3E-42 368.0 27.1 357 7-382 116-512 (524)
21 2rcj_C Light chain; immunoglob 100.0 2.9E-35 9.8E-40 348.4 41.8 357 8-377 3-417 (523)
22 2ocw_A Polymeric-immunoglobuli 100.0 6.2E-35 2.1E-39 350.7 41.1 363 5-382 112-548 (585)
23 2jll_A NCAM2, neural cell adhe 100.0 1.5E-33 5E-38 320.4 41.6 359 99-496 1-380 (389)
24 2rik_A Titin; I-SET IG fold, p 100.0 8.9E-34 3E-38 307.1 37.3 276 2-286 2-283 (284)
25 3qs9_E FL cytokine receptor; i 100.0 7.2E-35 2.4E-39 342.2 29.5 332 15-381 149-511 (527)
26 1z7z_I Intercellular adhesion 100.0 2.1E-34 7.2E-39 334.2 29.4 331 8-380 89-449 (450)
27 1wio_A CD4, T-cell surface gly 100.0 7.8E-35 2.7E-39 327.6 24.5 318 14-378 3-361 (363)
28 3l5h_A Interleukin-6 receptor 100.0 5.3E-36 1.8E-40 360.2 15.4 534 103-736 7-588 (589)
29 1qgc_4 Protein (immunoglobulin 100.0 8.3E-35 2.8E-39 336.3 22.9 366 7-376 3-435 (438)
30 1z7z_I Intercellular adhesion 100.0 6.9E-34 2.4E-38 329.9 30.3 338 7-382 1-369 (450)
31 2rcj_C Light chain; immunoglob 100.0 1.1E-32 3.9E-37 326.2 34.2 353 5-368 114-512 (523)
32 1qz1_A Neural cell adhesion mo 100.0 3.4E-32 1.2E-36 295.6 31.6 276 5-287 2-290 (291)
33 2yd9_A Receptor-type tyrosine- 100.0 4.1E-32 1.4E-36 297.2 30.4 269 3-287 4-291 (304)
34 2rik_A Titin; I-SET IG fold, p 100.0 4.5E-31 1.5E-35 285.8 38.1 271 97-379 3-283 (284)
35 3v2a_R Vascular endothelial gr 100.0 5.5E-33 1.9E-37 345.4 21.1 445 11-491 132-651 (772)
36 2wim_A N-CAM 2, NCAM2, neural 100.0 5.4E-32 1.9E-36 294.1 25.8 273 3-288 2-285 (291)
37 3kld_A Contactin 4, axcam, BIG 100.0 1.1E-31 3.7E-36 304.3 29.1 263 13-287 110-383 (384)
38 3v2a_R Vascular endothelial gr 100.0 4.6E-35 1.6E-39 364.1 0.2 358 13-382 338-758 (772)
39 3laf_A Deleted in colorectal c 100.0 3.2E-31 1.1E-35 302.5 28.7 271 6-287 122-401 (403)
40 1igt_B IGG2A intact antibody - 100.0 5.1E-31 1.8E-35 305.0 26.9 352 9-368 4-433 (444)
41 2yd9_A Receptor-type tyrosine- 100.0 4.8E-30 1.6E-34 280.8 29.6 274 97-382 4-293 (304)
42 1hzh_H IGG, immunoglobulin hea 100.0 1.8E-30 6E-35 301.7 27.2 348 10-369 5-443 (457)
43 3l5h_A Interleukin-6 receptor 100.0 7.5E-32 2.6E-36 324.1 15.2 445 193-738 8-494 (589)
44 2nzi_A Titin; IG-domain, FNIII 100.0 1.4E-29 4.7E-34 277.2 31.5 288 187-507 3-296 (305)
45 1cs6_A Axonin-1; neural cell a 100.0 4.2E-30 1.4E-34 291.0 27.2 262 12-286 108-381 (382)
46 1iga_A IGA1; immunoglobulin; N 100.0 9.5E-29 3.2E-33 288.5 39.1 349 8-369 4-443 (475)
47 2y25_A Myomesin; structural pr 100.0 1.5E-30 5.2E-35 286.4 20.7 272 5-287 7-315 (317)
48 3p3y_A Neurofascin; IG domains 100.0 7.5E-30 2.6E-34 291.2 25.6 268 11-287 122-403 (404)
49 1fnf_A Fibronectin; RGD, extra 100.0 8.6E-28 2.9E-32 270.6 42.0 305 344-733 58-364 (368)
50 2o26_X MAST/stem cell growth f 100.0 1.9E-29 6.5E-34 274.0 27.0 265 5-287 12-288 (290)
51 3l5i_A Interleukin-6 receptor 100.0 5.5E-29 1.9E-33 270.4 29.4 278 396-736 2-289 (290)
52 3t1w_A Four-domain fibronectin 100.0 7.9E-28 2.7E-32 271.6 38.8 304 343-730 58-362 (375)
53 1qz1_A Neural cell adhesion mo 100.0 1.4E-28 4.7E-33 267.2 31.1 269 99-380 2-290 (291)
54 3qs7_E FL cytokine receptor; i 100.0 9.2E-29 3.1E-33 282.6 29.7 331 70-423 4-365 (423)
55 2v5m_A Dscam; neurobiology SPL 100.0 4.2E-29 1.4E-33 283.4 26.5 262 5-285 103-387 (388)
56 1zlg_A Anosmin 1; insulin-like 100.0 1.6E-27 5.6E-32 289.1 41.8 337 343-739 222-633 (680)
57 2y23_A Myomesin; structural pr 100.0 5.6E-29 1.9E-33 273.2 25.5 261 12-286 8-311 (312)
58 3oq3_B IFN-alpha/beta binding 100.0 3.1E-29 1.1E-33 277.6 22.9 263 13-286 37-329 (329)
59 3rjd_A High affinity immunoglo 100.0 2.1E-28 7.1E-33 261.2 27.8 239 5-277 1-249 (262)
60 4fqp_A Poliovirus receptor; im 100.0 9.4E-29 3.2E-33 271.7 25.6 268 7-288 2-305 (313)
61 2wim_A N-CAM 2, NCAM2, neural 100.0 2.6E-28 9E-33 264.9 28.2 270 98-381 3-285 (291)
62 1igy_B IGG1 intact antibody MA 100.0 3.1E-31 1E-35 305.9 4.3 348 9-369 3-424 (434)
63 4fom_A Poliovirus receptor-rel 100.0 4.5E-29 1.6E-33 273.5 20.8 264 12-287 6-300 (308)
64 3r8q_A Fibronectin; heparin, F 100.0 1.6E-27 5.4E-32 258.8 32.6 264 396-727 19-283 (290)
65 2y25_A Myomesin; structural pr 100.0 3.9E-29 1.3E-33 275.1 19.5 276 98-381 6-316 (317)
66 3ejj_X Macrophage colony-stimu 100.0 3.8E-28 1.3E-32 263.4 25.9 265 5-287 4-281 (289)
67 1itb_B Type 1 interleukin-1 re 100.0 3.5E-29 1.2E-33 275.3 18.0 273 11-287 11-314 (315)
68 4dep_C Interleukin-1 receptor 100.0 1.6E-28 5.4E-33 274.4 23.1 272 12-287 14-333 (349)
69 1ry7_B FGFR-3, fibroblast grow 100.0 1.2E-29 4.3E-34 281.5 13.7 270 10-288 13-328 (334)
70 1bih_A Hemolin; insect immunit 100.0 6E-29 2E-33 282.9 19.5 264 8-285 103-394 (395)
71 3u83_A Poliovirus receptor-rel 100.0 4.2E-28 1.4E-32 268.8 25.7 268 7-288 16-321 (331)
72 3o4o_C Interleukin-1 receptor 100.0 2E-29 6.9E-34 280.4 14.6 276 5-286 18-334 (339)
73 1tdq_A Tenascin-R; extracellul 100.0 1E-26 3.5E-31 251.4 34.0 263 396-729 13-278 (283)
74 1zvo_C Myeloma immunoglobulin 100.0 3.4E-26 1.2E-30 268.6 38.3 347 10-370 5-493 (512)
75 2o26_X MAST/stem cell growth f 100.0 2E-27 6.8E-32 258.0 25.0 263 97-381 10-289 (290)
76 1zlg_A Anosmin 1; insulin-like 100.0 1E-26 3.5E-31 282.1 33.1 308 355-726 134-489 (680)
77 2wng_A Tyrosine-protein phosph 100.0 2E-27 6.8E-32 262.9 23.3 264 6-279 4-311 (327)
78 1ry7_B FGFR-3, fibroblast grow 100.0 9E-29 3.1E-33 274.5 12.0 271 104-382 13-329 (334)
79 1i1r_A GP130, interleukin-6 re 100.0 1.4E-26 4.8E-31 252.9 27.3 270 299-738 10-302 (303)
80 3lb6_C IL-13, interleukin-13 r 99.9 6.7E-27 2.3E-31 262.4 24.3 287 396-738 30-336 (380)
81 3t1w_A Four-domain fibronectin 99.9 1E-25 3.5E-30 254.3 32.5 268 397-729 2-271 (375)
82 1fnf_A Fibronectin; RGD, extra 99.9 1.5E-25 5E-30 252.3 33.2 267 397-729 1-269 (368)
83 2oz4_A Intercellular adhesion 99.9 1.2E-26 4E-31 248.3 21.9 239 15-287 13-264 (265)
84 4fqp_A Poliovirus receptor; im 99.9 1.6E-25 5.5E-30 245.9 31.5 266 102-382 3-306 (313)
85 4dkd_C Macrophage colony-stimu 99.9 3.2E-27 1.1E-31 256.5 17.5 269 3-288 2-282 (292)
86 3o4o_C Interleukin-1 receptor 99.9 6.6E-28 2.3E-32 268.2 12.2 275 95-378 14-333 (339)
87 3mjg_X Beta-type platelet-deri 99.9 3.6E-26 1.2E-30 247.8 25.6 262 6-287 1-278 (289)
88 2y23_A Myomesin; structural pr 99.9 2.6E-26 8.8E-31 251.9 23.3 262 108-379 10-311 (312)
89 3u83_A Poliovirus receptor-rel 99.9 1.4E-25 4.9E-30 248.3 29.0 267 100-381 15-321 (331)
90 3ejj_X Macrophage colony-stimu 99.9 4.3E-26 1.5E-30 247.2 24.1 268 98-380 3-281 (289)
91 3oq3_B IFN-alpha/beta binding 99.9 2E-26 6.7E-31 255.1 21.0 258 107-378 37-328 (329)
92 3rjd_A High affinity immunoglo 99.9 1.6E-25 5.5E-30 238.8 27.0 240 99-370 1-249 (262)
93 3vh8_G Killer cell immunoglobu 99.9 1.2E-26 4E-31 255.4 18.6 266 4-287 23-313 (316)
94 2dtg_E Insulin receptor; IR ec 99.9 1.5E-27 5E-32 297.4 12.0 303 396-739 467-890 (897)
95 1wio_A CD4, T-cell surface gly 99.9 7E-26 2.4E-30 254.4 22.7 266 109-423 4-322 (363)
96 2d9q_B Granulocyte colony-stim 99.9 2.7E-25 9.2E-30 243.9 26.6 281 300-643 7-312 (313)
97 4dep_C Interleukin-1 receptor 99.9 2.6E-26 8.9E-31 256.4 17.5 264 106-380 14-333 (349)
98 1itb_B Type 1 interleukin-1 re 99.9 1.6E-26 5.4E-31 254.1 15.5 262 107-379 13-313 (315)
99 1cfb_A Drosophila neuroglian; 99.9 7.4E-25 2.5E-29 224.4 25.4 192 544-737 6-203 (205)
100 2oz4_A Intercellular adhesion 99.9 4.5E-25 1.6E-29 236.0 23.2 236 109-380 13-264 (265)
101 3se4_A Interferon alpha/beta r 99.9 6.9E-26 2.3E-30 258.6 17.6 320 347-739 68-411 (414)
102 4fom_A Poliovirus receptor-rel 99.9 2.1E-25 7E-30 244.4 20.4 262 107-382 7-302 (308)
103 2nzi_A Titin; IG-domain, FNIII 99.9 1.4E-24 4.7E-29 237.3 26.8 264 98-374 3-284 (305)
104 3vh8_G Killer cell immunoglobu 99.9 2.8E-25 9.7E-30 244.3 20.3 263 92-369 17-297 (316)
105 2wng_A Tyrosine-protein phosph 99.9 1.6E-24 5.6E-29 239.4 25.3 258 101-370 5-309 (327)
106 4dkd_C Macrophage colony-stimu 99.9 2E-25 6.9E-30 242.3 17.5 265 98-381 3-282 (292)
107 3p4l_A Neogenin; iron homeosta 99.9 4.1E-24 1.4E-28 220.0 26.4 191 544-739 5-206 (211)
108 1qgc_4 Protein (immunoglobulin 99.9 7.5E-26 2.6E-30 261.2 14.4 267 6-283 117-435 (438)
109 3s98_A Interferon alpha/beta r 99.9 7E-24 2.4E-28 230.8 26.4 274 398-737 4-302 (306)
110 1za6_B IGG heavy chain; immuno 99.9 2.8E-24 9.6E-29 239.3 18.7 257 10-277 5-331 (344)
111 1n26_A IL-6 receptor alpha cha 99.9 1.7E-22 5.7E-27 222.7 32.4 281 294-737 7-297 (325)
112 3bpo_C Interleukin-13 receptor 99.9 8.5E-23 2.9E-27 224.0 29.0 281 398-736 4-311 (314)
113 2c5d_C AXL oncogene, tyrosine- 99.9 2E-23 6.7E-28 211.9 22.0 177 5-185 2-191 (195)
114 2yd1_A Tyrosine-protein phosph 99.9 6.2E-23 2.1E-27 211.2 24.7 184 3-189 4-202 (212)
115 2iep_A Muscle-specific kinase 99.9 1.6E-23 5.3E-28 211.8 19.8 183 5-189 7-192 (192)
116 3mjg_X Beta-type platelet-deri 99.9 1.6E-23 5.4E-28 227.0 20.8 258 100-382 1-280 (289)
117 2wqr_A IG epsilon chain C regi 99.9 1.9E-24 6.4E-29 238.5 12.5 264 5-276 7-309 (323)
118 2v5t_A NCAM2, N-CAM 2, neural 99.9 4.4E-23 1.5E-27 207.9 21.3 181 5-186 2-187 (189)
119 2vkw_A Neural cell adhesion mo 99.9 7.9E-23 2.7E-27 210.0 23.2 189 544-737 9-203 (209)
120 3se4_A Interferon alpha/beta r 99.9 3.6E-23 1.2E-27 236.1 22.1 275 398-739 8-308 (414)
121 1rhf_A Tyrosine-protein kinase 99.9 7.1E-23 2.4E-27 205.1 21.4 176 5-186 2-182 (182)
122 1epf_A NCAM, protein (neural c 99.9 1.5E-22 5E-27 204.5 23.1 178 6-185 3-189 (191)
123 3f7q_A Integrin beta-4, GP150; 99.9 8.4E-23 2.9E-27 213.8 21.7 189 544-739 6-201 (234)
124 2v44_A NCAM2, neural cell adhe 99.9 8.8E-23 3E-27 205.8 20.9 174 7-184 4-184 (189)
125 2yd6_A PTPRD protein; hydrolas 99.9 1.6E-22 5.4E-27 208.2 22.8 186 4-191 5-208 (212)
126 2a38_A Titin; Z1Z2, structural 99.9 1.4E-22 4.7E-27 205.2 21.2 183 2-186 2-194 (194)
127 1igt_B IGG2A intact antibody - 99.9 1.9E-22 6.4E-27 233.1 24.1 264 105-376 6-337 (444)
128 3rbs_A Myomesin-1; immunoglobu 99.9 2.3E-22 7.9E-27 205.7 20.7 177 5-186 3-206 (207)
129 2j8h_A Titin, connectin; cardi 99.9 4.1E-22 1.4E-26 202.3 21.7 180 4-186 3-196 (197)
130 2wv3_A Neuroplastin; igcam, me 99.9 1.5E-21 5.1E-26 197.0 24.7 183 98-287 2-190 (190)
131 2ibg_A CG9211-PA, GH03927P; IH 99.9 3.3E-22 1.1E-26 206.2 19.4 188 549-737 7-212 (214)
132 1cfb_A Drosophila neuroglian; 99.9 1.6E-21 5.6E-26 199.5 24.1 195 396-640 4-205 (205)
133 1za6_B IGG heavy chain; immuno 99.9 2.6E-22 8.9E-27 223.4 19.4 257 104-369 5-330 (344)
134 2wv3_A Neuroplastin; igcam, me 99.9 1.5E-21 5.1E-26 197.1 22.9 174 5-186 3-189 (190)
135 2v9r_A Roundabout homolog 1; p 99.9 4.2E-22 1.4E-26 204.8 19.0 193 3-196 7-211 (212)
136 2gys_A Cytokine receptor commo 99.9 4.2E-21 1.4E-25 219.4 29.0 280 396-735 107-418 (419)
137 2wqr_A IG epsilon chain C regi 99.9 1E-22 3.5E-27 224.5 15.0 246 115-369 25-309 (323)
138 2a38_A Titin; Z1Z2, structural 99.9 2.8E-21 9.6E-26 195.5 24.1 182 98-286 4-194 (194)
139 4fa8_A Secreted protein BARF1; 99.9 2.2E-22 7.6E-27 204.7 15.9 166 13-179 1-194 (203)
140 2yd6_A PTPRD protein; hydrolas 99.9 3.6E-21 1.2E-25 198.0 25.1 187 97-287 4-204 (212)
141 1hzh_H IGG, immunoglobulin hea 99.9 7.5E-22 2.6E-26 228.9 21.1 264 105-376 6-346 (457)
142 2vr9_A Roundabout 1, ROBO; imm 99.9 8.3E-22 2.8E-26 203.5 18.9 182 3-186 7-205 (217)
143 3lcy_A Titin; A-BAND, IG tande 99.9 2.3E-21 7.8E-26 196.6 21.6 180 4-187 6-196 (197)
144 3k0w_A Mucosa-associated lymph 99.9 1.7E-21 5.8E-26 201.4 20.9 171 5-189 18-204 (218)
145 2j8h_A Titin, connectin; cardi 99.9 2.7E-21 9.4E-26 196.2 21.3 183 98-287 3-197 (197)
146 3s97_C Contactin-1; carbonic a 99.9 2E-21 6.9E-26 197.7 20.1 181 6-186 8-200 (201)
147 1iga_A IGA1; immunoglobulin; N 99.9 2.4E-21 8.3E-26 225.7 22.8 251 18-276 139-443 (475)
148 2yd1_A Tyrosine-protein phosph 99.9 6.1E-21 2.1E-25 196.3 23.0 181 98-288 5-201 (212)
149 3lpw_A A77-A78 domain from tit 99.9 9.3E-21 3.2E-25 192.2 24.0 183 544-733 6-192 (197)
150 3sgj_C Human FCG3A receptor; r 99.9 1.9E-21 6.5E-26 198.6 18.6 169 4-190 6-177 (204)
151 2q7n_A Leukemia inhibitory fac 99.9 5.2E-21 1.8E-25 218.7 23.3 276 293-640 203-488 (488)
152 2ibg_A CG9211-PA, GH03927P; IH 99.9 9.5E-21 3.2E-25 195.2 22.3 196 398-638 2-212 (214)
153 3r4d_A CEA-related cell adhesi 99.9 8.3E-21 2.9E-25 194.5 21.3 181 7-191 1-204 (208)
154 2gee_A Hypothetical protein; f 99.9 2.3E-20 8E-25 190.4 24.4 173 546-729 25-198 (203)
155 1f97_A Junction adhesion molec 99.9 2.6E-21 8.9E-26 198.7 17.2 179 6-186 2-206 (212)
156 3jz7_A MCAR, CAR, coxsackievir 99.9 1.9E-21 6.4E-26 200.0 16.1 180 8-189 3-214 (214)
157 1igy_B IGG1 intact antibody MA 99.9 9.8E-23 3.4E-27 234.7 7.1 259 104-370 4-321 (434)
158 1bqu_A Protein (GP130); cytoki 99.9 5.6E-21 1.9E-25 197.0 19.6 191 543-739 7-207 (215)
159 2va4_A NCAM2, N-CAM 2, neural 99.9 1.3E-20 4.4E-25 190.2 21.7 176 6-186 3-192 (192)
160 2x1w_L Vascular endothelial gr 99.9 4.2E-21 1.4E-25 197.7 17.9 177 11-191 13-211 (213)
161 1uct_A Immunoglobulin alpha FC 99.9 2.5E-21 8.4E-26 199.8 16.1 181 4-189 8-200 (218)
162 3lcy_A Titin; A-BAND, IG tande 99.9 2.2E-20 7.4E-25 189.3 22.6 184 97-287 5-196 (197)
163 1fnl_A Low affinity immunoglob 99.9 1.2E-20 4E-25 187.7 20.2 167 3-187 5-174 (175)
164 3f7q_A Integrin beta-4, GP150; 99.9 3.3E-21 1.1E-25 201.6 16.7 221 396-683 4-231 (234)
165 2ha1_A Fibronectin; beta sandw 99.9 5.4E-21 1.9E-25 194.9 17.9 176 548-731 4-197 (201)
166 2va4_A NCAM2, N-CAM 2, neural 99.9 4.2E-20 1.4E-24 186.4 24.1 185 99-286 2-192 (192)
167 1f2q_A High affinity immunoglo 99.9 6.6E-21 2.3E-25 189.7 17.7 169 4-190 3-174 (176)
168 2iep_A Muscle-specific kinase 99.9 5.4E-21 1.8E-25 193.1 17.1 181 97-287 5-190 (192)
169 2d3v_A Leukocyte immunoglobuli 99.9 2E-21 6.8E-26 197.2 13.1 167 4-175 4-180 (196)
170 3p2t_A Leukocyte immunoglobuli 99.9 3.8E-21 1.3E-25 195.2 14.7 178 3-185 3-194 (196)
171 1oll_A NK receptor; immune sys 99.9 4.4E-21 1.5E-25 193.3 15.0 179 3-186 2-187 (188)
172 3p4l_A Neogenin; iron homeosta 99.9 3.3E-20 1.1E-24 190.6 21.8 194 396-639 3-205 (211)
173 2r15_A Myomesin-1; sarcomeric 99.8 5.5E-20 1.9E-24 188.9 23.0 170 16-188 13-211 (212)
174 2c5d_C AXL oncogene, tyrosine- 99.8 4.7E-20 1.6E-24 186.8 22.2 174 98-285 1-191 (195)
175 3fl7_A Ephrin receptor; ATP-bi 99.8 1.1E-20 3.7E-25 217.4 18.8 183 548-738 338-534 (536)
176 2v5t_A NCAM2, N-CAM 2, neural 99.8 2.6E-20 8.9E-25 187.4 19.0 180 99-287 2-188 (189)
177 4fa8_A Secreted protein BARF1; 99.8 7.7E-21 2.6E-25 193.3 14.7 168 108-279 2-194 (203)
178 1ugn_A LIR1, leukocyte immunog 99.8 7.6E-21 2.6E-25 193.3 14.3 178 4-186 4-197 (198)
179 3ojm_B Fibroblast growth facto 99.8 4.3E-20 1.5E-24 192.3 20.1 185 5-191 15-225 (231)
180 1vca_A VCAM-D1,2, human vascul 99.8 2.1E-20 7.3E-25 190.4 17.1 178 7-190 2-200 (202)
181 2gi7_A GPVI protein; IG-like d 99.8 8.6E-21 2.9E-25 190.4 13.9 158 4-175 7-168 (184)
182 3n06_B PRL-R, prolactin recept 99.8 2.3E-19 7.7E-24 184.2 24.5 193 544-739 4-206 (210)
183 2v44_A NCAM2, neural cell adhe 99.8 1.1E-19 3.9E-24 182.9 21.7 176 102-286 5-186 (189)
184 1zvo_C Myeloma immunoglobulin 99.8 3.3E-18 1.1E-22 200.6 37.5 260 104-371 5-388 (512)
185 3grw_A Fibroblast growth facto 99.8 6.4E-20 2.2E-24 192.7 20.6 180 12-193 22-224 (241)
186 1epf_A NCAM, protein (neural c 99.8 7.6E-20 2.6E-24 184.5 20.2 180 99-286 2-190 (191)
187 1hng_A CD2; T lymphocyte adhes 99.8 2E-20 6.8E-25 186.0 15.0 161 13-185 4-174 (176)
188 2vkw_A Neural cell adhesion mo 99.8 1.3E-19 4.5E-24 185.9 21.5 191 396-638 7-203 (209)
189 3fl7_A Ephrin receptor; ATP-bi 99.8 3.3E-20 1.1E-24 213.4 18.7 230 352-639 303-534 (536)
190 2c1o_A IGK-C protein; FAB frag 99.8 3E-20 1E-24 197.0 16.8 199 68-277 11-245 (254)
191 1nbq_A JAM, junctional adhesio 99.8 4.3E-21 1.5E-25 196.6 9.5 178 6-185 5-207 (209)
192 2fbo_J V1V2;, variable region- 99.8 2.2E-20 7.4E-25 197.4 14.9 177 8-185 5-250 (250)
193 3ry4_A Low affinity immunoglob 99.8 7.2E-20 2.5E-24 180.9 17.4 163 5-185 4-169 (170)
194 1i1r_A GP130, interleukin-6 re 99.8 5.5E-19 1.9E-23 192.6 25.7 257 192-502 8-297 (303)
195 1qr4_A Protein (tenascin); fib 99.8 3.2E-19 1.1E-23 179.2 21.9 170 544-728 7-176 (186)
196 3mj6_A Junctional adhesion mol 99.8 7.3E-20 2.5E-24 195.6 18.2 197 5-207 5-258 (268)
197 2ny1_B T-cell surface glycopro 99.8 1.1E-19 3.7E-24 182.3 18.1 161 14-190 4-182 (184)
198 1rhf_A Tyrosine-protein kinase 99.8 9.3E-20 3.2E-24 182.3 17.6 172 99-286 2-182 (182)
199 3rbs_A Myomesin-1; immunoglobu 99.8 5E-20 1.7E-24 188.3 15.8 174 100-286 4-206 (207)
200 3bp6_B Programmed cell death 1 99.8 4.2E-20 1.4E-24 188.4 15.1 175 9-188 6-194 (202)
201 1cd9_B G-CSF-R, protein (G-CSF 99.8 2.2E-19 7.6E-24 185.0 20.6 192 544-738 5-214 (215)
202 2v9r_A Roundabout homolog 1; p 99.8 1E-19 3.4E-24 186.9 17.9 188 98-300 8-210 (212)
203 3lpw_A A77-A78 domain from tit 99.8 3.7E-19 1.3E-23 180.3 21.7 184 396-632 4-190 (197)
204 2ifg_A High affinity nerve gro 99.8 8.8E-21 3E-25 211.2 10.2 178 5-189 158-347 (347)
205 3b5h_A Cervical EMMPRIN, HAB18 99.8 3E-19 1E-23 178.9 19.8 161 15-186 8-182 (184)
206 3k0w_A Mucosa-associated lymph 99.8 2.2E-19 7.6E-24 185.5 19.2 170 98-288 17-203 (218)
207 3mj8_L Stimulatory hamster ant 99.8 8E-20 2.8E-24 188.0 15.5 175 6-182 2-208 (213)
208 1f97_A Junction adhesion molec 99.8 2.3E-19 8E-24 184.0 17.6 183 100-287 2-207 (212)
209 1p6f_A NKP46, natural cytotoxi 99.8 1.3E-19 4.4E-24 189.9 15.8 179 4-187 6-191 (242)
210 3r8q_A Fibronectin; heparin, F 99.8 2.2E-18 7.5E-23 186.6 25.7 174 544-728 21-194 (290)
211 2gee_A Hypothetical protein; f 99.8 3E-18 1E-22 174.7 24.9 178 395-630 21-198 (203)
212 2r15_A Myomesin-1; sarcomeric 99.8 6.3E-19 2.2E-23 180.9 20.0 170 112-287 15-210 (212)
213 3sbw_C Programmed cell death 1 99.8 3.7E-19 1.3E-23 184.2 18.4 180 9-191 5-215 (222)
214 3ojm_B Fibroblast growth facto 99.8 5.4E-19 1.8E-23 184.0 18.3 188 97-288 13-222 (231)
215 3grw_A Fibroblast growth facto 99.8 1.3E-18 4.6E-23 182.5 21.4 187 98-288 10-219 (241)
216 3sgj_C Human FCG3A receptor; r 99.8 2.7E-19 9.1E-24 182.6 15.4 167 98-288 6-175 (204)
217 2q7n_A Leukemia inhibitory fac 99.8 2.5E-18 8.7E-23 196.5 24.7 365 342-738 51-487 (488)
218 1bqu_A Protein (GP130); cytoki 99.8 3.1E-19 1E-23 184.0 15.3 198 396-645 6-212 (215)
219 2vr9_A Roundabout 1, ROBO; imm 99.8 4.7E-19 1.6E-23 182.7 16.6 185 98-287 8-206 (217)
220 1n26_A IL-6 receptor alpha cha 99.8 5.3E-18 1.8E-22 186.6 26.0 278 102-502 9-293 (325)
221 2if7_A SLAM family member 6; N 99.8 1.2E-18 4.2E-23 176.0 19.1 162 10-181 3-186 (193)
222 3d9a_L Light chain of hyhel10 99.8 2.2E-19 7.7E-24 184.6 13.5 169 7-176 3-202 (213)
223 2d9q_B Granulocyte colony-stim 99.8 2.5E-18 8.5E-23 188.3 22.7 188 547-739 102-309 (313)
224 1b6u_A KIR2DL3, P58 killer cel 99.8 1.9E-19 6.6E-24 190.0 12.3 215 4-226 6-240 (257)
225 1vca_A VCAM-D1,2, human vascul 99.8 1.9E-18 6.5E-23 175.9 19.1 179 105-287 6-197 (202)
226 1jbj_A CD3 epsilon and gamma e 99.8 2.7E-19 9.2E-24 179.7 12.0 146 14-177 8-179 (186)
227 1lk3_L 9D7 light chain; antige 99.8 6.5E-19 2.2E-23 180.8 15.1 166 8-175 4-200 (210)
228 3jz7_A MCAR, CAR, coxsackievir 99.8 7.9E-19 2.7E-23 180.3 15.4 174 105-287 6-212 (214)
229 2pet_A Lutheran blood group gl 99.8 6.7E-19 2.3E-23 183.4 14.4 176 10-186 5-230 (231)
230 2ifg_A High affinity nerve gro 99.8 3.5E-20 1.2E-24 206.3 4.8 201 72-287 136-345 (347)
231 3s97_C Contactin-1; carbonic a 99.8 1.8E-18 6.1E-23 175.7 16.9 174 102-286 11-200 (201)
232 3nl4_L Antigen binding fragmen 99.8 1.5E-18 5.3E-23 178.3 16.5 165 6-171 2-198 (213)
233 1fnl_A Low affinity immunoglob 99.8 1.3E-18 4.5E-23 172.8 15.3 166 98-287 6-174 (175)
234 3uzq_A Anti-dengue MAB 4E11; d 99.8 1.6E-18 5.6E-23 183.4 16.8 185 7-192 3-249 (253)
235 1ugn_A LIR1, leukocyte immunog 99.8 1.6E-18 5.4E-23 176.0 16.0 169 98-275 4-181 (198)
236 3mtr_A N-CAM-1, NCAM-1, neural 99.8 9.4E-18 3.2E-22 172.8 21.9 178 292-498 18-206 (215)
237 1q0x_L FAB 9B1, light chain; a 99.8 1.9E-18 6.4E-23 177.5 16.6 171 8-180 4-208 (212)
238 4frw_A Poliovirus receptor-rel 99.8 2.6E-18 8.8E-23 176.7 17.4 175 11-186 5-210 (218)
239 4f80_A Butyrophilin subfamily 99.8 1.7E-18 5.8E-23 179.9 16.1 178 7-188 4-214 (226)
240 1nqb_A Single-chain antibody f 99.8 2.5E-18 8.6E-23 182.3 17.6 178 9-187 4-233 (256)
241 3p2t_A Leukocyte immunoglobuli 99.8 1.5E-18 5.2E-23 175.9 15.2 168 98-275 4-179 (196)
242 1tdq_A Tenascin-R; extracellul 99.8 1.9E-17 6.5E-22 178.5 24.8 170 545-727 16-188 (283)
243 2p1y_A Bispecific alpha/beta T 99.8 4.3E-18 1.5E-22 178.3 19.0 166 7-174 2-222 (238)
244 2zg1_A Sialic acid-binding IG- 99.8 2.3E-18 7.9E-23 177.1 16.6 171 10-185 5-213 (214)
245 3b5h_A Cervical EMMPRIN, HAB18 99.8 3.5E-18 1.2E-22 171.1 17.4 169 109-287 8-183 (184)
246 1nkr_A P58-CL42 KIR; inhibitor 99.8 2.5E-18 8.4E-23 175.1 16.5 164 4-174 7-184 (201)
247 3l5i_A Interleukin-6 receptor 99.8 1.4E-17 4.9E-22 180.1 23.4 222 347-637 64-289 (290)
248 2c1o_A IGK-C protein; FAB frag 99.8 1.7E-18 5.9E-23 183.4 15.5 206 158-370 11-245 (254)
249 1f2q_A High affinity immunoglo 99.8 1.2E-18 4.1E-23 173.3 13.1 167 97-287 2-171 (176)
250 2ha1_A Fibronectin; beta sandw 99.8 2.5E-18 8.6E-23 175.0 15.8 193 399-630 1-195 (201)
251 3auv_A SC-DSFV derived from th 99.8 3.1E-18 1.1E-22 183.9 17.3 181 5-186 12-253 (276)
252 4i0k_A CD276 antigen; immunogl 99.8 1.1E-18 3.7E-23 180.7 13.1 179 13-195 3-214 (222)
253 2d3v_A Leukocyte immunoglobuli 99.8 1.2E-18 4.1E-23 176.6 12.8 168 98-275 4-180 (196)
254 1hnf_A CD2; T lymphocyte adhes 99.8 6.9E-18 2.4E-22 167.9 17.7 157 12-183 6-177 (182)
255 3s96_B 3B5H10 FAB light chain; 99.8 2.3E-18 7.8E-23 177.7 14.4 174 6-181 2-214 (218)
256 3bp6_B Programmed cell death 1 99.8 1.9E-17 6.3E-22 168.7 21.0 174 103-287 6-193 (202)
257 3tv3_L PGT128 light chain, IG 99.8 1.1E-18 3.6E-23 179.3 11.7 172 7-182 3-206 (211)
258 1nbq_A JAM, junctional adhesio 99.8 6.7E-19 2.3E-23 180.2 10.1 182 99-285 4-207 (209)
259 2x1w_L Vascular endothelial gr 99.8 4.8E-18 1.6E-22 174.7 16.1 180 105-287 13-207 (213)
260 1qr4_A Protein (tenascin); fib 99.8 2.9E-17 9.9E-22 164.9 21.3 180 396-638 5-184 (186)
261 1f3r_B FV antibody fragment; I 99.8 4E-18 1.4E-22 180.9 15.7 179 10-189 5-247 (257)
262 3esu_F Antibody 14B7* light ch 99.8 1.2E-17 4.1E-22 176.4 19.1 166 6-172 5-231 (250)
263 3umt_A SCFV heavy chain and li 99.8 4.5E-18 1.5E-22 180.5 15.7 180 9-189 6-247 (256)
264 3r06_A Anti-mouse CD3epsilon a 99.8 5.6E-18 1.9E-22 174.1 15.8 169 6-175 2-201 (213)
265 1hng_A CD2; T lymphocyte adhes 99.8 5.4E-18 1.9E-22 168.4 14.9 154 109-285 6-174 (176)
266 2ghw_B Anti-SARS SCFV antibody 99.8 1.4E-17 4.7E-22 175.6 18.9 176 10-186 7-241 (247)
267 1dr9_A B7-1 (CD80), T lymphocy 99.8 9.6E-18 3.3E-22 170.6 17.0 166 14-183 3-197 (201)
268 1moe_A Anti-CEA MAB T84.66; an 99.8 6.7E-18 2.3E-22 177.1 16.1 165 7-172 3-219 (240)
269 3r4d_A CEA-related cell adhesi 99.8 1.3E-17 4.3E-22 170.6 17.8 170 106-287 6-200 (208)
270 2gi7_A GPVI protein; IG-like d 99.8 5.6E-18 1.9E-22 169.8 14.2 159 97-276 6-169 (184)
271 3mj8_L Stimulatory hamster ant 99.8 1.2E-17 3.9E-22 171.7 16.9 174 100-281 2-207 (213)
272 3sob_L Antibody light chain; b 99.8 8.3E-18 2.8E-22 175.9 16.1 170 6-176 25-225 (237)
273 2znx_A SCFV; fluorotryptohpan, 99.7 1.1E-17 3.7E-22 175.8 16.7 167 6-173 2-222 (242)
274 3ry4_A Low affinity immunoglob 99.7 1.2E-17 4.1E-22 164.8 15.6 163 99-285 4-169 (170)
275 2xzc_L FAB A.17 light chain; i 99.7 7.6E-18 2.6E-22 173.6 14.7 168 8-176 4-204 (216)
276 2fbo_J V1V2;, variable region- 99.7 8.2E-18 2.8E-22 177.5 14.7 170 103-277 6-239 (250)
277 2dru_A Chimera of CD48 antigen 99.7 2.6E-17 9.1E-22 163.9 17.5 157 12-183 6-177 (180)
278 1oll_A NK receptor; immune sys 99.7 2.5E-17 8.5E-22 165.6 17.4 162 98-274 3-172 (188)
279 1sy6_A T-cell surface glycopro 99.7 3.3E-18 1.1E-22 174.3 10.7 152 17-185 15-202 (204)
280 1qok_A MFE-23 recombinant anti 99.7 2.9E-17 9.9E-22 176.8 18.3 177 8-186 29-267 (282)
281 1svz_A Immunoglobulin;, single 99.7 3E-17 1E-21 173.0 18.0 166 7-173 3-228 (247)
282 3e0g_A Leukemia inhibitory fac 99.7 3.5E-17 1.2E-21 185.5 19.4 326 396-738 83-482 (483)
283 3juy_B 3B3 single chain varian 99.7 1.6E-17 5.3E-22 176.3 15.6 180 5-185 6-255 (256)
284 4f80_A Butyrophilin subfamily 99.7 7.1E-17 2.4E-21 167.6 20.2 174 106-287 11-213 (226)
285 3tf7_C 42F3 MUT7 SCFV (42F3 al 99.7 2.4E-17 8E-22 174.8 16.9 179 6-186 4-247 (256)
286 3d9a_L Light chain of hyhel10 99.7 2.3E-17 7.8E-22 169.5 16.2 175 102-283 4-209 (213)
287 1c1e_H Catalytic antibody 1E9 99.7 8.8E-18 3E-22 173.5 13.2 172 10-183 5-216 (219)
288 1uct_A Immunoglobulin alpha FC 99.7 1.2E-17 4.3E-22 172.0 14.0 176 98-287 8-198 (218)
289 3sbw_C Programmed cell death 1 99.7 8.8E-17 3E-21 166.2 20.5 177 105-287 7-211 (222)
290 1ccz_A Protein (CD58); LFA-3, 99.7 2.7E-17 9.4E-22 162.3 15.9 153 12-184 2-168 (171)
291 3ux9_B SCFV antibody; five hel 99.7 2.9E-17 9.8E-22 174.2 17.0 166 8-174 5-236 (256)
292 3bkj_L WO2 IGG2A FAB fragment 99.7 8E-18 2.7E-22 178.0 12.5 170 6-176 35-240 (252)
293 1pz5_B Heavy chain of FAB (SYA 99.7 1.7E-17 6E-22 171.4 14.1 171 10-182 5-216 (220)
294 2ny1_B T-cell surface glycopro 99.7 3.2E-17 1.1E-21 164.1 15.5 156 108-288 4-180 (184)
295 3mj6_A Junctional adhesion mol 99.7 3E-17 1E-21 175.2 16.3 202 100-311 6-257 (268)
296 4fmk_A Poliovirus receptor-rel 99.7 2.4E-17 8.1E-22 170.3 15.0 176 11-187 7-219 (225)
297 2pet_A Lutheran blood group gl 99.7 2.2E-17 7.6E-22 171.8 14.8 169 103-273 4-211 (231)
298 3lqm_A Interleukin-10 receptor 99.7 1.4E-16 4.9E-21 161.3 20.0 180 547-739 5-197 (201)
299 1mju_H Immunoglobulin MS6-12; 99.7 2.8E-17 9.4E-22 170.8 14.9 181 9-191 4-221 (227)
300 1lk3_L 9D7 light chain; antige 99.7 5.9E-17 2E-21 166.0 17.2 169 102-278 4-203 (210)
301 3gkz_A Anti-methamphetamine si 99.7 8.1E-17 2.8E-21 170.8 18.8 179 9-188 12-250 (257)
302 1nfd_E H57 FAB; complex (immun 99.7 3.2E-18 1.1E-22 175.8 7.6 167 8-176 3-201 (212)
303 4frw_A Poliovirus receptor-rel 99.7 6.5E-17 2.2E-21 166.1 17.4 177 104-286 4-210 (218)
304 3nl4_L Antigen binding fragmen 99.7 7.3E-17 2.5E-21 165.7 17.6 165 100-271 2-198 (213)
305 3s98_A Interferon alpha/beta r 99.7 1.7E-17 5.9E-22 180.3 13.2 184 547-739 7-201 (306)
306 2gjj_A A21 single-chain antibo 99.7 6.7E-17 2.3E-21 172.1 17.4 168 5-173 5-239 (264)
307 1q9r_B S25-2 FAB (IGG1K) heavy 99.7 2.5E-17 8.4E-22 170.5 13.5 172 10-183 5-219 (222)
308 3s96_B 3B5H10 FAB light chain; 99.7 8.5E-17 2.9E-21 165.8 16.8 173 100-280 2-213 (218)
309 2gki_A Nuclease; anti-DNA anti 99.7 1.1E-16 3.7E-21 173.1 18.1 182 8-190 25-275 (291)
310 2ed9_A Netrin receptor DCC; tu 99.7 3.8E-17 1.3E-21 151.9 12.5 121 616-737 3-123 (124)
311 3pv7_A B7-H6, IG-like domain-c 99.7 4.6E-17 1.6E-21 171.7 14.7 173 10-185 8-224 (248)
312 1cd9_B G-CSF-R, protein (G-CSF 99.7 3.4E-16 1.2E-20 161.0 20.8 198 396-640 3-215 (215)
313 3n06_B PRL-R, prolactin recept 99.7 3.4E-16 1.2E-20 160.3 20.6 190 396-640 2-206 (210)
314 2j6e_L IGM, FAB light chain; a 99.7 1E-17 3.5E-22 175.0 9.0 171 8-180 23-228 (234)
315 1x9q_A SCFV, 4M5.3 anti-fluore 99.7 7.4E-17 2.5E-21 172.3 15.7 167 6-173 16-254 (268)
316 1mq8_A ICAM-1, intercellular a 99.7 2.8E-17 9.7E-22 175.2 12.1 257 8-287 2-282 (291)
317 2if7_A SLAM family member 6; N 99.7 3.1E-16 1.1E-20 158.3 19.0 156 105-280 4-185 (193)
318 4go6_B HCF C-terminal chain 1; 99.7 1.1E-17 3.8E-22 173.9 8.6 163 568-737 18-201 (232)
319 3eow_R Poliovirus receptor; im 99.7 7.6E-18 2.6E-22 174.2 7.0 172 11-183 5-208 (221)
320 3pv7_A B7-H6, IG-like domain-c 99.7 2.1E-16 7.1E-21 166.6 18.2 180 104-285 8-224 (248)
321 4i0k_A CD276 antigen; immunogl 99.7 8.9E-17 3E-21 166.2 14.9 174 107-287 3-206 (222)
322 2dbj_A Proto-oncogene tyrosine 99.7 1.5E-16 5.1E-21 147.7 14.9 116 624-739 1-119 (124)
323 3tv3_L PGT128 light chain, IG 99.7 9.1E-17 3.1E-21 164.8 14.4 170 102-281 4-205 (211)
324 3shs_A HOC head outer capsid p 99.7 1.8E-15 6.1E-20 152.0 23.0 244 7-272 4-279 (304)
325 3d9a_H Heavy chain of hyhel10 99.7 5.7E-17 1.9E-21 166.2 12.5 165 10-178 5-205 (210)
326 3bqu_C 3H6 FAB light chain; be 99.7 3.6E-18 1.2E-22 178.3 3.3 169 6-175 24-223 (233)
327 1jbj_A CD3 epsilon and gamma e 99.7 1.9E-17 6.4E-22 166.2 8.3 144 110-277 10-179 (186)
328 3omz_A Human vdelta1 gamma del 99.7 1.1E-16 3.7E-21 170.1 14.7 167 5-172 2-230 (259)
329 2fbj_H IGA-kappa J539 FAB (hea 99.7 2.7E-16 9.4E-21 162.4 17.1 167 10-178 5-212 (220)
330 2dtg_E Insulin receptor; IR ec 99.7 1E-17 3.6E-22 208.6 7.4 248 344-641 549-891 (897)
331 3mtr_A N-CAM-1, NCAM-1, neural 99.7 1.8E-16 6.2E-21 163.1 15.5 181 4-189 18-211 (215)
332 1axi_B HGHBP, growth hormone r 99.7 1.1E-16 3.7E-21 166.6 13.8 188 544-737 30-235 (236)
333 2p1y_A Bispecific alpha/beta T 99.7 2.8E-16 9.6E-21 164.4 17.1 171 102-274 3-222 (238)
334 1wj3_A KIAA1496 protein; beta 99.7 1.3E-16 4.4E-21 146.0 12.5 112 624-739 1-112 (117)
335 3r06_A Anti-mouse CD3epsilon a 99.7 3.5E-16 1.2E-20 160.6 17.2 172 100-278 2-204 (213)
336 2ghw_B Anti-SARS SCFV antibody 99.7 4E-16 1.4E-20 164.3 18.0 179 106-286 9-241 (247)
337 1dee_B IGM RF 2A2; FAB-IBP com 99.7 6.2E-16 2.1E-20 160.1 18.9 170 10-180 5-220 (223)
338 4dzb_B Vbeta2 (MAIT T cell rec 99.7 1.8E-16 6.2E-21 166.8 15.1 169 7-176 3-220 (246)
339 1b6u_A KIR2DL3, P58 killer cel 99.7 9.8E-17 3.3E-21 169.2 12.9 216 97-329 5-240 (257)
340 1nqb_A Single-chain antibody f 99.7 5.1E-16 1.7E-20 164.4 18.4 182 104-287 5-233 (256)
341 1nkr_A P58-CL42 KIR; inhibitor 99.7 3.3E-16 1.1E-20 159.2 16.1 166 97-274 6-184 (201)
342 3esu_F Antibody 14B7* light ch 99.7 4.1E-16 1.4E-20 164.6 17.4 172 100-272 5-231 (250)
343 1q0x_L FAB 9B1, light chain; a 99.7 4E-16 1.4E-20 160.0 16.8 170 102-277 4-205 (212)
344 1c1e_H Catalytic antibody 1E9 99.7 4.1E-16 1.4E-20 160.9 16.4 171 104-282 5-215 (219)
345 2xzc_L FAB A.17 light chain; i 99.7 6.6E-16 2.3E-20 159.0 17.8 169 106-281 7-209 (216)
346 3tf7_C 42F3 MUT7 SCFV (42F3 al 99.7 4.8E-16 1.6E-20 164.7 17.1 185 101-287 5-248 (256)
347 1op3_H FAB 2G12, heavy chain; 99.7 2.3E-16 7.9E-21 163.6 14.3 164 10-176 5-214 (225)
348 3fku_X Neutralizing antibody F 99.7 1.9E-16 6.6E-21 170.1 14.1 177 7-186 3-249 (280)
349 3umt_A SCFV heavy chain and li 99.7 9E-16 3.1E-20 162.6 19.0 180 106-287 9-245 (256)
350 1f3r_B FV antibody fragment; I 99.7 2.8E-16 9.6E-21 166.6 14.8 181 105-287 6-245 (257)
351 3uzq_A Anti-dengue MAB 4E11; d 99.7 3.5E-16 1.2E-20 165.4 15.3 185 102-288 4-245 (253)
352 1p6f_A NKP46, natural cytotoxi 99.7 8.9E-16 3E-20 160.6 17.9 176 98-288 6-192 (242)
353 3sob_L Antibody light chain; b 99.7 7.4E-16 2.5E-20 161.0 17.4 177 99-282 24-231 (237)
354 1gsm_A Madcam-1, mucosal addre 99.7 1.9E-15 6.5E-20 151.9 19.3 158 7-174 7-192 (210)
355 2zg1_A Sialic acid-binding IG- 99.7 9.8E-16 3.3E-20 157.3 17.4 166 103-284 4-210 (214)
356 3auv_A SC-DSFV derived from th 99.7 9E-16 3.1E-20 164.6 17.5 188 99-287 12-254 (276)
357 4ei6_B Vbeta16 XV19 type II na 99.7 8.9E-16 3.1E-20 161.4 17.1 168 6-175 3-218 (245)
358 3qib_D 2B4 beta chain; IG doma 99.7 4.1E-16 1.4E-20 166.7 14.7 195 68-277 3-245 (270)
359 3nfj_J T cell receptor beta ch 99.7 3.5E-16 1.2E-20 164.6 13.7 170 6-176 2-219 (245)
360 3bkj_L WO2 IGG2A FAB fragment 99.7 1E-15 3.5E-20 161.8 17.1 172 99-277 34-241 (252)
361 1dr9_A B7-1 (CD80), T lymphocy 99.7 1.3E-15 4.3E-20 154.9 17.0 164 108-282 3-196 (201)
362 3juy_B 3B3 single chain varian 99.7 1.9E-15 6.5E-20 160.1 19.0 175 99-275 6-244 (256)
363 3q5y_A TCR N15 beta; IG, T cel 99.7 1.7E-15 5.7E-20 158.8 18.3 168 6-175 3-212 (240)
364 3bae_H WO2 IGG2A FAB fragment 99.7 7.8E-16 2.7E-20 159.9 15.7 167 10-178 5-217 (228)
365 2ee2_A Contactin-1; neural cel 99.7 1.1E-15 3.7E-20 140.8 14.8 112 624-739 1-114 (119)
366 3pl6_D MBP peptide / T-cell re 99.7 8.1E-16 2.8E-20 164.2 15.9 168 6-175 27-240 (268)
367 1moe_A Anti-CEA MAB T84.66; an 99.7 1.1E-15 3.9E-20 160.0 16.7 171 101-272 3-219 (240)
368 3gkz_A Anti-methamphetamine si 99.7 2.5E-15 8.4E-20 159.3 19.2 183 103-287 12-249 (257)
369 1wfo_A Sidekick 2; FN3, cell a 99.7 3.3E-16 1.1E-20 146.9 11.0 121 616-739 2-125 (130)
370 1dn0_B IGM-kappa cold agglutin 99.7 1.5E-15 5.1E-20 158.2 17.2 175 10-186 5-226 (232)
371 4fmk_A Poliovirus receptor-rel 99.6 3E-15 1E-19 154.4 18.9 173 106-285 8-215 (225)
372 2rgs_A I, IG gamma-2B heavy ch 99.6 4.9E-17 1.7E-21 167.8 5.1 168 5-175 9-204 (218)
373 3e0g_A Leukemia inhibitory fac 99.6 4.6E-15 1.6E-19 168.1 21.5 263 299-639 204-482 (483)
374 3n1f_C Cell adhesion molecule- 99.6 1E-15 3.5E-20 136.1 12.7 98 639-736 2-102 (102)
375 1gsm_A Madcam-1, mucosal addre 99.6 9.8E-15 3.4E-19 146.7 21.0 161 109-282 17-200 (210)
376 3d9a_H Heavy chain of hyhel10 99.6 9.1E-16 3.1E-20 157.2 13.7 167 105-280 6-207 (210)
377 3d85_D IL-12B, interleukin-12 99.6 1E-14 3.4E-19 157.8 22.4 116 611-732 184-302 (306)
378 1nfd_E H57 FAB; complex (immun 99.6 3.8E-16 1.3E-20 160.2 10.7 164 106-277 6-202 (212)
379 1q9r_B S25-2 FAB (IGG1K) heavy 99.6 7.8E-16 2.7E-20 159.2 12.9 170 106-283 7-219 (222)
380 2znx_A SCFV; fluorotryptohpan, 99.6 3.1E-15 1.1E-19 156.9 17.7 172 101-273 3-222 (242)
381 1pz5_B Heavy chain of FAB (SYA 99.6 1.6E-15 5.6E-20 156.5 15.0 169 105-281 6-215 (220)
382 3m8o_H Immunoglobulin A1 heavy 99.6 4E-15 1.4E-19 153.7 17.9 162 10-176 5-212 (221)
383 1hnf_A CD2; T lymphocyte adhes 99.6 3.2E-15 1.1E-19 148.6 16.4 153 106-284 6-178 (182)
384 3nl4_H Antigen binding fragmen 99.6 5.1E-16 1.7E-20 159.7 11.0 174 9-184 3-211 (215)
385 2rgs_A I, IG gamma-2B heavy ch 99.6 5E-16 1.7E-20 160.2 10.8 174 98-277 8-206 (218)
386 1mju_H Immunoglobulin MS6-12; 99.6 2.8E-15 9.6E-20 155.6 16.6 177 103-287 4-217 (227)
387 1qok_A MFE-23 recombinant anti 99.6 3.5E-15 1.2E-19 160.5 17.9 182 103-287 30-268 (282)
388 3liz_H 4C3 monoclonal antibody 99.6 9.9E-16 3.4E-20 161.9 13.4 175 10-186 5-219 (253)
389 3eow_R Poliovirus receptor; im 99.6 2.1E-16 7.3E-21 163.3 8.0 173 105-285 5-210 (221)
390 2vol_A Murine IGG FC; FC, zinc 99.6 2.7E-16 9.2E-21 160.7 8.4 164 9-175 6-196 (207)
391 1svz_A Immunoglobulin;, single 99.6 4.3E-15 1.5E-19 156.4 17.7 171 102-273 4-228 (247)
392 2vol_A Murine IGG FC; FC, zinc 99.6 6.8E-16 2.3E-20 157.7 11.1 169 102-276 5-197 (207)
393 1hxm_B Gamma-delta T-cell rece 99.6 2.4E-15 8.2E-20 157.8 15.2 169 6-177 2-219 (242)
394 2wbj_D OB TCR; transmembrane, 99.6 2.8E-15 9.7E-20 161.0 15.7 171 5-176 24-245 (279)
395 1sy6_A T-cell surface glycopro 99.6 7.4E-16 2.5E-20 156.9 10.5 155 111-285 15-202 (204)
396 2edx_A Protein tyrosine phosph 99.6 3.7E-15 1.3E-19 140.5 14.5 116 624-739 1-119 (134)
397 3qib_D 2B4 beta chain; IG doma 99.6 2.3E-15 8E-20 160.8 14.7 168 6-175 28-243 (270)
398 2xqy_G A13-D6.3 monoclonal ant 99.6 2.4E-15 8.1E-20 159.5 14.4 168 7-176 8-214 (261)
399 4doh_B Interleukin-20 receptor 99.6 9.4E-15 3.2E-19 148.1 18.0 183 547-738 10-201 (206)
400 3bqu_C 3H6 FAB light chain; be 99.6 3.7E-16 1.3E-20 162.9 7.7 171 99-276 23-224 (233)
401 1x5h_A Neogenin; RGM binding, 99.6 1E-15 3.4E-20 144.0 9.9 115 624-738 1-116 (132)
402 4dzb_B Vbeta2 (MAIT T cell rec 99.6 2.8E-15 9.5E-20 157.7 14.3 171 101-278 3-222 (246)
403 3qt2_A Interleukin-5 receptor 99.6 2.9E-13 9.8E-18 146.1 30.3 278 395-733 9-313 (317)
404 3ux9_B SCFV antibody; five hel 99.6 6.9E-15 2.4E-19 155.7 17.4 170 104-274 7-236 (256)
405 1ccz_A Protein (CD58); LFA-3, 99.6 2.4E-15 8.3E-20 148.2 12.2 147 108-283 4-167 (171)
406 1eer_B Epobp, erythropoietin r 99.6 5.5E-15 1.9E-19 153.1 15.4 185 547-738 24-224 (227)
407 2gjj_A A21 single-chain antibo 99.6 1.1E-14 3.6E-19 155.0 18.0 173 100-273 6-239 (264)
408 3omz_A Human vdelta1 gamma del 99.6 3.4E-15 1.2E-19 158.4 14.1 174 99-273 2-231 (259)
409 1uen_A KIAA0343 protein; immun 99.6 2.5E-15 8.5E-20 139.8 11.2 111 629-739 2-120 (125)
410 4doh_R Interleukin-20 receptor 99.6 2.2E-14 7.6E-19 147.0 19.0 187 547-739 12-215 (221)
411 1c5d_H Monoclonal antibody aga 99.6 6.7E-15 2.3E-19 151.3 15.1 166 10-177 5-206 (215)
412 3shs_A HOC head outer capsid p 99.6 1.1E-13 3.7E-18 139.2 23.0 237 101-364 4-278 (304)
413 1mq8_A ICAM-1, intercellular a 99.6 5.4E-15 1.8E-19 157.6 14.7 255 104-380 4-282 (291)
414 2j6e_L IGM, FAB light chain; a 99.6 9.1E-16 3.1E-20 160.0 8.6 175 100-280 21-228 (234)
415 1dee_B IGM RF 2A2; FAB-IBP com 99.6 1.8E-14 6.3E-19 148.9 18.2 169 106-281 7-221 (223)
416 2fbj_H IGA-kappa J539 FAB (hea 99.6 1.3E-14 4.5E-19 149.7 16.8 165 106-278 7-212 (220)
417 2gki_A Nuclease; anti-DNA anti 99.6 1.2E-14 4.2E-19 156.9 17.0 181 105-287 28-272 (291)
418 1op3_H FAB 2G12, heavy chain; 99.6 7.4E-15 2.5E-19 152.2 14.6 164 106-277 7-215 (225)
419 3bn9_D E2 FAB heavy chain; ant 99.6 3.2E-15 1.1E-19 157.8 11.9 165 10-176 5-219 (257)
420 3liz_H 4C3 monoclonal antibody 99.6 7.7E-15 2.6E-19 155.0 14.6 174 105-286 6-219 (253)
421 1x4y_A Biregional cell adhesio 99.6 1.1E-14 3.6E-19 132.9 13.6 104 636-739 3-109 (114)
422 3bae_H WO2 IGG2A FAB fragment 99.6 7.1E-15 2.4E-19 152.6 13.8 168 106-281 7-220 (228)
423 2djs_A Ephrin type-B receptor 99.6 7.1E-15 2.4E-19 132.7 12.0 102 635-739 2-103 (108)
424 1x9q_A SCFV, 4M5.3 anti-fluore 99.6 1.5E-14 5.2E-19 154.2 16.7 175 98-273 14-254 (268)
425 1bec_A 14.3.D T cell antigen r 99.6 9.8E-15 3.4E-19 152.7 14.8 165 8-174 2-210 (238)
426 2dlh_A Receptor-type tyrosine- 99.6 2.8E-15 9.6E-20 138.5 9.3 114 624-739 1-116 (121)
427 2e7h_A Ephrin type-B receptor 99.6 7.2E-15 2.5E-19 132.8 11.8 102 635-739 2-104 (109)
428 2ede_A Netrin receptor DCC; tu 99.6 2E-14 6.8E-19 131.2 14.4 103 635-739 2-109 (114)
429 2dru_A Chimera of CD48 antigen 99.6 3.3E-14 1.1E-18 141.4 17.1 151 107-282 7-176 (180)
430 3to4_D NKT vbeta2 (mouse varia 99.6 1.1E-14 3.8E-19 153.9 14.4 166 8-174 4-217 (253)
431 1x5i_A Neogenin; RGM binding, 99.6 1.6E-14 5.3E-19 134.3 13.7 109 622-735 3-117 (126)
432 1l6x_A Immunoglobulin gamma-1 99.6 1.1E-15 3.9E-20 156.0 6.1 169 6-175 2-196 (207)
433 1x5f_A Neogenin; RGM binding, 99.6 1.7E-14 5.9E-19 132.9 13.2 112 626-739 3-115 (120)
434 3pl6_D MBP peptide / T-cell re 99.6 1.7E-14 5.7E-19 153.9 14.9 171 99-277 26-242 (268)
435 3g9v_A Interleukin 22 receptor 99.6 7E-15 2.4E-19 149.4 11.1 184 547-735 11-210 (211)
436 1wfn_A Sidekick 2; FN3, cell a 99.6 8.5E-15 2.9E-19 134.8 10.6 105 624-731 1-106 (119)
437 3fku_X Neutralizing antibody F 99.6 1.4E-14 4.9E-19 155.4 13.9 182 102-287 4-250 (280)
438 1hxm_B Gamma-delta T-cell rece 99.6 3.8E-14 1.3E-18 148.6 16.6 176 101-285 3-227 (242)
439 1va9_A DOWN syndrome cell adhe 99.6 1.3E-14 4.4E-19 134.3 11.4 112 628-739 2-118 (122)
440 2w59_A IGY FCU3-4; immunoglobu 99.6 1.8E-15 6.3E-20 157.4 6.3 165 5-175 12-216 (231)
441 1oga_E TRBC1, T-cell receptor 99.6 2.5E-14 8.6E-19 151.0 14.5 169 6-176 4-218 (252)
442 3nfj_J T cell receptor beta ch 99.6 4E-14 1.4E-18 148.7 15.8 170 102-278 4-221 (245)
443 2xqy_G A13-D6.3 monoclonal ant 99.5 5.2E-14 1.8E-18 149.1 16.7 167 103-277 10-215 (261)
444 4ei6_B Vbeta16 XV19 type II na 99.5 3.7E-14 1.3E-18 149.0 15.3 170 100-277 3-220 (245)
445 3o3u_N Maltose-binding peripla 99.5 1.7E-14 5.8E-19 172.4 14.4 164 12-175 373-565 (581)
446 1dn0_B IGM-kappa cold agglutin 99.5 6.2E-14 2.1E-18 145.9 16.7 175 105-287 6-227 (232)
447 1x5l_A Ephrin type-A receptor 99.5 1.3E-14 4.4E-19 131.7 10.1 105 632-739 2-106 (111)
448 1i1c_A IGG2A, IG gamma-2A chai 99.5 1.7E-15 5.9E-20 158.2 4.9 167 6-175 16-210 (239)
449 3bpo_C Interleukin-13 receptor 99.5 5.6E-13 1.9E-17 145.6 25.1 230 345-637 54-311 (314)
450 3v6o_A Leptin receptor; recept 99.5 1.7E-13 5.9E-18 139.4 19.4 181 548-732 5-203 (206)
451 3lqm_A Interleukin-10 receptor 99.5 1.2E-13 4E-18 139.8 18.1 181 399-640 3-197 (201)
452 3knb_B Obscurin-like protein 1 99.5 3.7E-14 1.3E-18 127.3 12.7 92 98-189 12-107 (107)
453 1ujt_A KIAA1568 protein; fibro 99.5 2.1E-14 7.3E-19 130.9 11.3 112 528-643 3-119 (120)
454 4go6_B HCF C-terminal chain 1; 99.5 1.3E-14 4.5E-19 150.6 11.2 168 425-642 18-205 (232)
455 1x3d_A Fibronectin type-III do 99.5 5.2E-14 1.8E-18 129.3 13.0 112 624-739 1-113 (118)
456 1ypz_F T-cell receptor gamma c 99.5 2.5E-14 8.5E-19 148.7 12.2 167 7-176 3-216 (230)
457 3m8o_H Immunoglobulin A1 heavy 99.5 1.6E-13 5.6E-18 141.5 18.0 164 105-277 6-213 (221)
458 1i1c_A IGG2A, IG gamma-2A chai 99.5 1.4E-14 4.7E-19 151.4 9.8 170 102-277 19-212 (239)
459 3q5y_A TCR N15 beta; IG, T cel 99.5 7.4E-14 2.5E-18 146.2 15.3 172 101-277 4-214 (240)
460 4acp_A IG gamma-1 chain C regi 99.5 1.5E-14 5.1E-19 150.7 9.8 193 74-276 1-218 (240)
461 3nl4_H Antigen binding fragmen 99.5 2.2E-14 7.5E-19 147.4 10.9 171 104-284 4-211 (215)
462 3knb_B Obscurin-like protein 1 99.5 2.7E-14 9.3E-19 128.1 10.0 92 5-100 13-107 (107)
463 3knb_A Titin; IG-like, titin, 99.5 3.1E-14 1.1E-18 126.1 10.1 92 4-97 4-98 (100)
464 2ed7_A Netrin receptor DCC; tu 99.5 9E-14 3.1E-18 127.9 13.6 105 632-739 9-114 (119)
465 1l6x_A Immunoglobulin gamma-1 99.5 3E-14 1E-18 145.4 11.4 167 104-276 7-197 (207)
466 3d85_D IL-12B, interleukin-12 99.5 1.1E-13 3.7E-18 149.6 16.2 246 199-499 17-303 (306)
467 2edd_A Netrin receptor DCC; tu 99.5 4.6E-14 1.6E-18 130.2 11.4 111 626-738 3-117 (123)
468 3tv3_H PGT128 heavy chain, IG 99.5 5.2E-14 1.8E-18 147.2 13.2 174 10-185 5-235 (239)
469 2wbj_D OB TCR; transmembrane, 99.5 9.9E-14 3.4E-18 148.8 15.8 172 100-278 25-247 (279)
470 1x5g_A Neogenin; RGM binding, 99.5 6.7E-14 2.3E-18 128.1 12.0 109 626-739 1-111 (116)
471 2w59_A IGY FCU3-4; immunoglobu 99.5 1.8E-14 6.3E-19 149.7 9.3 168 103-277 17-218 (231)
472 1ypz_E T cell receptor delta, 99.5 6.9E-14 2.4E-18 142.6 13.3 166 7-177 3-199 (207)
473 3qhz_H Human monoclonal antibo 99.5 3.6E-14 1.2E-18 147.8 11.0 174 10-185 5-227 (232)
474 3u2s_H PG9 heavy chain; greek 99.5 6.9E-14 2.4E-18 146.9 13.3 176 9-185 3-236 (248)
475 2crm_A Fibronectin type-III do 99.5 1.2E-13 4E-18 127.3 13.1 112 624-739 1-115 (120)
476 1c5d_H Monoclonal antibody aga 99.5 8.3E-14 2.8E-18 143.1 13.4 165 106-280 7-209 (215)
477 2haz_A N-CAM 1, neural cell ad 99.5 4.5E-14 1.5E-18 126.5 9.5 98 636-737 2-104 (105)
478 3n9g_H FAB fragment of MAB CR4 99.5 1.4E-13 4.8E-18 143.0 14.3 173 11-186 6-224 (230)
479 3bn9_D E2 FAB heavy chain; ant 99.5 6.2E-14 2.1E-18 147.9 11.7 165 106-278 7-221 (257)
480 1x5z_A Receptor-type tyrosine- 99.5 6.5E-14 2.2E-18 127.9 10.2 110 624-739 1-110 (115)
481 2edx_A Protein tyrosine phosph 99.5 1.9E-13 6.4E-18 128.7 13.2 109 546-654 21-133 (134)
482 2ed8_A Netrin receptor DCC; tu 99.5 2.5E-13 8.6E-18 121.9 13.1 99 636-739 3-101 (106)
483 2gys_A Cytokine receptor commo 99.5 1.1E-12 3.8E-17 149.4 21.5 271 400-723 5-312 (419)
484 3o3u_N Maltose-binding peripla 99.5 2.4E-13 8.3E-18 162.4 16.6 166 107-277 374-567 (581)
485 2edy_A Receptor-type tyrosine- 99.5 4.1E-14 1.4E-18 126.4 7.4 101 635-737 2-102 (103)
486 1x5j_A Neogenin; RGM binding, 99.5 1.7E-13 5.7E-18 124.3 11.3 99 638-738 5-107 (113)
487 3to4_D NKT vbeta2 (mouse varia 99.5 2E-13 6.9E-18 144.1 13.6 166 103-275 5-218 (253)
488 3knb_A Titin; IG-like, titin, 99.5 3.4E-13 1.2E-17 119.4 12.8 89 98-186 4-98 (100)
489 2yrz_A Integrin beta-4; GP150, 99.5 1.6E-13 5.4E-18 126.0 10.6 106 626-735 3-110 (118)
490 1axi_B HGHBP, growth hormone r 99.5 4.5E-13 1.5E-17 139.2 15.1 189 396-638 28-235 (236)
491 1x5a_A Ephrin type-A receptor 99.5 4.3E-13 1.5E-17 120.3 13.0 98 634-739 3-102 (107)
492 3iu4_H CHP3 FAB heavy chain; a 99.5 1.4E-13 4.8E-18 146.0 11.4 170 11-184 6-221 (263)
493 1bec_A 14.3.D T cell antigen r 99.5 4.1E-13 1.4E-17 140.3 14.2 170 102-276 2-212 (238)
494 1oga_E TRBC1, T-cell receptor 99.5 6.5E-13 2.2E-17 140.1 15.7 170 101-278 5-220 (252)
495 2dm4_A Sortilin-related recept 99.4 5E-13 1.7E-17 120.4 12.4 99 636-739 3-103 (108)
496 2kdg_A Myotilin; immonoglobuli 99.4 4.7E-13 1.6E-17 118.6 12.0 95 3-99 3-99 (100)
497 2dn7_A Receptor-type tyrosine- 99.4 4.4E-13 1.5E-17 120.6 11.7 100 635-739 2-101 (107)
498 3t04_D Monobody 7C12; engineer 99.4 9.1E-13 3.1E-17 117.3 13.5 89 643-734 9-100 (103)
499 3lb6_C IL-13, interleukin-13 r 99.4 2.7E-12 9.3E-17 143.5 20.6 179 548-736 36-233 (380)
500 1v5j_A KIAA1355 protein, RSGI 99.4 2E-13 6.9E-18 121.5 9.0 94 643-739 9-103 (108)
No 1
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}
Probab=100.00 E-value=4.6e-44 Score=427.91 Aligned_cols=445 Identities=24% Similarity=0.424 Sum_probs=343.3
Q ss_pred ccccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEec-CcEEEEcCCCCCCCeEEEEEEEe
Q psy574 4 LREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD-GTNLAIQDSRKTDDGRYQCVVKN 82 (977)
Q Consensus 4 l~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~-~g~L~I~~v~~~D~G~Y~C~a~n 82 (977)
-.|.|...+.++.+.+|++++|.|.+ .|.|.+.|.|+|||..+......++.... .++|.|.+++.+|+|.|+|.|.|
T Consensus 4 ~pP~f~~~~~~~~v~~G~~v~L~C~~-~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N 82 (570)
T 3b43_A 4 EPPYFIEPLEHVEAAIGEPITLQCKV-DGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLVINKVDHSDVGEYTCKAEN 82 (570)
T ss_dssp CCCEEEECCCCEEECTTSCEEEEEEE-ESSSSCEEEEECSSSBCCCCSSEEEECCTTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred CCCcceEECCceEEcCCCEEEEEEEE-ccCCCCEEEEEECCEEccCCCCEEEEEECCEEEEEEccCChhhCEEEEEEEEe
Confidence 45677777888999999999999999 89999999999999999554433443332 25799999999999999999999
Q ss_pred cCceeeeEeEEEEEE---cCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCC-ceEE---eccceEEE
Q psy574 83 VAGTRESTDAVLRVL---VKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED-RMSV---LPSRSLQL 155 (977)
Q Consensus 83 ~~g~~~s~~~~l~V~---~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~-~~~~---~~~~~L~I 155 (977)
..|...+ .+.|.|. .+|.+...+.+..+.+|+++.|.|.+.|.|.+.|.|+|++..+... ++.. ....+|.|
T Consensus 83 ~~g~~~~-~~~l~v~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i 161 (570)
T 3b43_A 83 SVGAVAS-SAVLVIKERKLPPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQI 161 (570)
T ss_dssp TTEEEEE-EEEEEECCCCCCCEESSCCCCEEEETTSCEEEEEEEESSSSCEEEEEETTEECCCCSSEEEEEETTEEEEEE
T ss_pred CCceEEE-EEEEEECCCCCCCcccccCCCeEecCCCeEEEEEEEccCCCCEEEEEECCEECcCCCCEEEEEECCEEEEEE
Confidence 9887554 3566665 3678888888889999999999999999999999999999988654 3322 23468999
Q ss_pred ccCccCCCeEEEEEEEeCCeeEEEEEEEEEe---eCCeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeec
Q psy574 156 SDVRLEDAGEYVCEAENAVGKISASATLTVQ---MAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIY 232 (977)
Q Consensus 156 ~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~---~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~ 232 (977)
.++..+|+|.|+|.|.|..|.....+.|.|. .+|.+...|....+.+|+.++|.|.+.|.|.+.+.|+|++..+.
T Consensus 162 ~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~pp~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~i~W~k~g~~i~-- 239 (570)
T 3b43_A 162 LQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIR-- 239 (570)
T ss_dssp SSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCCCCEEEECCCCBCCBSBSCEEEEEEEESSSCCEEEEEETTEECC--
T ss_pred CcCChHHCEEEEEEEEeCCcEEEEEEEEEEcCCCCCCccccCCceeEecCCCeEEEEEEEEECCCCEEEEEECCEECc--
Confidence 9999999999999999999998888888876 46788888888899999999999999999999999999998763
Q ss_pred CCCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEECCCCCCCCeEEeCCC-ceeecCCCcE
Q psy574 233 PGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPA-NQTLPLRSEA 311 (977)
Q Consensus 233 ~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~~~~~~pp~i~~~p~-~~~v~~g~~~ 311 (977)
...++.+... .+...|.|.+++.+|+|.|+ |.|.|..|....++.|.|.. +|.+...+. ...+..|+.+
T Consensus 240 ---~~~~~~~~~~-~~~~~L~i~~v~~~D~G~Y~-C~a~N~~g~~~~~~~l~V~~-----~p~~~~~~~~~~~v~~g~~~ 309 (570)
T 3b43_A 240 ---PGGNYKMTLV-ENTATLTVLKVTKGDAGQYT-CYASNVAGKDSCSAQLGVQE-----PPRFIKKLEPSRIVKQDEHT 309 (570)
T ss_dssp ---TTSSEEEEEE-TTEEEEEESSBCGGGCEEEE-EEEEETTEEEEEEEEECCBC-----CCEEEECCCSBCCEESSCEE
T ss_pred ---CCCcEEEEEE-CCEEEEEEcccCcccCEEEE-EEEECCCCcEEEEEEEEeec-----CCcccccCCCccEEcCCCcE
Confidence 2344444332 23458999999999999999 99999999999899999887 677665543 3457899999
Q ss_pred EEEEEEcc--CceEEEEECCEEcCCCCcEEEe---cCceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEECCCCCCC
Q psy574 312 RLRCQVRG--EGSVQWWRGEREVGSGPRVNVT---GDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNI 386 (977)
Q Consensus 312 ~L~C~~~~--~p~i~W~~~g~~l~~~~~~~~~---~~~sl~I~~v~~~d~G~Y~C~a~n~~G~~~~s~~l~v~~~~~~~~ 386 (977)
.|.|.+.+ .+.+.|++++..+....++.+. ..+.|.|.++...|+|.|+|.|.|..|....++.|.|..++....
T Consensus 310 ~l~C~~~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~P~~~~ 389 (570)
T 3b43_A 310 RYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRK 389 (570)
T ss_dssp EEEEEEESSSSCEEEEEETTEECCCSSSEEEEEETTEEEEEEESCCGGGCEEEEEEEEBTTBCCEEEEEECEECCCEECS
T ss_pred EEEEEEeeCCCCEEEEeECCEECCCCCcEEEEEECCEEEEEECCCCcccCEEEEEEEEeCCCEEEEEEEEEecCCCeeec
Confidence 99999999 6789999999999877665543 234699999999999999999999999999999999987652211
Q ss_pred cccCCCCC-CCCCCCCCCCeEEeeCCCceEEEEEcCCCCCCcccceEEEEEeecCCCCCCCCCCCCcccEEEeceecCcC
Q psy574 387 GFFRAPEP-STYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSP 465 (977)
Q Consensus 387 ~~~~~~~~-~~~p~~P~~~~v~~~~~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 465 (977)
.+.. ....+....+.|...+.....+.|....... ..-..|.+. ......
T Consensus 390 ----~~~~~~~~~G~~v~l~C~~~g~P~p~v~W~k~g~~l-~~~~~~~~~------------------------~~~~~~ 440 (570)
T 3b43_A 390 ----KPHPVETLKGADVHLECELQGTPPFQVSWHKDKREL-RSGKKYKIM------------------------SENFLT 440 (570)
T ss_dssp ----CCCCEEECTTCCEEEEEEEESSSSCCCEEEETTEEC-CSSSSEEEE------------------------EETTEE
T ss_pred ----CCCceeecCCCEEEEEEEEecCCCCEEEEEECCEEC-cCCCCEEEE------------------------EcCCEE
Confidence 1110 1122223333444444444556665543200 000112221 111224
Q ss_pred eEEEEccCCCCeEEEEEEEEcCCCCC
Q psy574 466 ILTVTNLTVGLTYTFLVRALNSHGLS 491 (977)
Q Consensus 466 ~~~i~~L~p~t~Y~~~V~a~n~~G~s 491 (977)
.+.|.++.......|.|.|.|..|..
T Consensus 441 ~L~i~~v~~~D~G~Y~C~A~N~~G~~ 466 (570)
T 3b43_A 441 SIHILNVDSADIGEYQCKASNDVGSD 466 (570)
T ss_dssp EEEECSCCGGGCEEEEEEEECSSCEE
T ss_pred EEEECCCChhhCEEEEEEEEECCCeE
Confidence 56788888888899999999998864
No 2
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}
Probab=100.00 E-value=3.4e-44 Score=428.97 Aligned_cols=447 Identities=22% Similarity=0.360 Sum_probs=355.4
Q ss_pred ccccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEe-cCcEEEEcCCCCCCCeEEEEEEEe
Q psy574 4 LREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV-DGTNLAIQDSRKTDDGRYQCVVKN 82 (977)
Q Consensus 4 l~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~-~~g~L~I~~v~~~D~G~Y~C~a~n 82 (977)
+.|.|...+.++.+.+|++++|.|.+ .|.|.+.|.|+|||+.+......+.... ..++|.|.+++.+|+|.|+|.|.|
T Consensus 100 ~~p~~~~~~~~~~~~~G~~v~l~C~~-~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n 178 (570)
T 3b43_A 100 LPPSFARKLKDVHETLGFPVAFECRI-NGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASN 178 (570)
T ss_dssp CCCEESSCCCCEEEETTSCEEEEEEE-ESSSSCEEEEEETTEECCCCSSEEEEEETTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred CCCcccccCCCeEecCCCeEEEEEEE-ccCCCCEEEEEECCEECcCCCCEEEEEECCEEEEEECcCChHHCEEEEEEEEe
Confidence 35677777888999999999999999 7889999999999999954433333333 246899999999999999999999
Q ss_pred cCceeeeEeEEEEEE---cCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCC-CceEEe---ccceEEE
Q psy574 83 VAGTRESTDAVLRVL---VKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPE-DRMSVL---PSRSLQL 155 (977)
Q Consensus 83 ~~g~~~s~~~~l~V~---~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~-~~~~~~---~~~~L~I 155 (977)
..|... ..+.|.|. .+|.+...|.+..+.+|+++.|.|.+.|.|.+.|.|+|++..+.. .++.+. ....|.|
T Consensus 179 ~~g~~~-~~~~l~v~~~~~pp~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~i~W~k~g~~i~~~~~~~~~~~~~~~~L~i 257 (570)
T 3b43_A 179 PLGTAS-SSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTV 257 (570)
T ss_dssp TTEEEE-EEEEEEEECCCCCCEEEECCCCBCCBSBSCEEEEEEEESSSCCEEEEEETTEECCTTSSEEEEEETTEEEEEE
T ss_pred CCcEEE-EEEEEEEcCCCCCCccccCCceeEecCCCeEEEEEEEEECCCCEEEEEECCEECcCCCcEEEEEECCEEEEEE
Confidence 988654 44667765 467888888888999999999999999999999999999998864 344432 3468999
Q ss_pred ccCccCCCeEEEEEEEeCCeeEEEEEEEEEeeCCeEEecCCC-cEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCC
Q psy574 156 SDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERPSD-LRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPG 234 (977)
Q Consensus 156 ~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~~~p~~~~~p~~-~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~ 234 (977)
.+++.+|+|.|+|.|.|..|..+..+.|.|..+|.+...+.. ..+.+|+.+.|.|.+.|.|.+.+.|+|++..+.
T Consensus 258 ~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~P~p~v~W~k~~~~l~---- 333 (570)
T 3b43_A 258 LKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQ---- 333 (570)
T ss_dssp SSBCGGGCEEEEEEEEETTEEEEEEEEECCBCCCEEEECCCSBCCEESSCEEEEEEEEESSSSCEEEEEETTEECC----
T ss_pred cccCcccCEEEEEEEECCCCcEEEEEEEEeecCCcccccCCCccEEcCCCcEEEEEEEeeCCCCEEEEeECCEECC----
Confidence 999999999999999999999999999999999998776544 468899999999999999999999999998764
Q ss_pred CccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEECCCCCCCCeEEeCCCceeecCCCcEEEE
Q psy574 235 DRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLR 314 (977)
Q Consensus 235 ~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~~~~~~pp~i~~~p~~~~v~~g~~~~L~ 314 (977)
...++.+... ++...|.|.+++.+|+|.|+ |.|.|..|.....+.|.|.. +|.+...|....+..|+.+.|.
T Consensus 334 -~~~~~~~~~~-~~~~~L~i~~v~~~D~G~Y~-C~a~N~~g~~~~~~~l~V~~-----~P~~~~~~~~~~~~~G~~v~l~ 405 (570)
T 3b43_A 334 -ESSKFRMSFV-ESVAVLEMYNLSVEDSGDYT-CEAHNAAGSASSSTSLKVKE-----PPVFRKKPHPVETLKGADVHLE 405 (570)
T ss_dssp -CSSSEEEEEE-TTEEEEEEESCCGGGCEEEE-EEEEBTTBCCEEEEEECEEC-----CCEECSCCCCEEECTTCCEEEE
T ss_pred -CCCcEEEEEE-CCEEEEEECCCCcccCEEEE-EEEEeCCCEEEEEEEEEecC-----CCeeecCCCceeecCCCEEEEE
Confidence 2334444332 24458999999999999999 99999999999999999998 7888888888899999999999
Q ss_pred EEEcc--CceEEEEECCEEcCCCCcEEEecC---ceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEECCCCCCCccc
Q psy574 315 CQVRG--EGSVQWWRGEREVGSGPRVNVTGD---GSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFF 389 (977)
Q Consensus 315 C~~~~--~p~i~W~~~g~~l~~~~~~~~~~~---~sl~I~~v~~~d~G~Y~C~a~n~~G~~~~s~~l~v~~~~~~~~~~~ 389 (977)
|.+.+ .|.+.|+++|..+....++.+..+ ++|.|.++...|+|.|+|.|.|..|.....+.|.|..++....
T Consensus 406 C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~P~~~~--- 482 (570)
T 3b43_A 406 CELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAPPRFVK--- 482 (570)
T ss_dssp EEEESSSSCCCEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECCCCEEEE---
T ss_pred EEEecCCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEECCCChhhCEEEEEEEEECCCeEEEEEEEEeccCCcccc---
Confidence 99999 678999999999987777766544 3699999999999999999999999999999999987653211
Q ss_pred CCCCCCCCCCCCCCCeEEeeCCCceEEEEEcCCCCCCcccceEEEEEeecCCCCCCCCCCCCcccEEEeceecCcCeEEE
Q psy574 390 RAPEPSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTV 469 (977)
Q Consensus 390 ~~~~~~~~p~~P~~~~v~~~~~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~i 469 (977)
.........+.+..+.+...+...+.+.|..........-..+.+. .......+.|
T Consensus 483 ~~~~~~~~~g~~~~l~c~~~g~p~~~v~W~k~~~~~~~~~~~~~~~------------------------~~~~~~~L~i 538 (570)
T 3b43_A 483 KLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWIS------------------------YSENIATLQF 538 (570)
T ss_dssp CCCCBCCBTTCCEEEEEEEESCSSCCCEEEETTEECCCCTTTEEEC------------------------CCSSEEEEEE
T ss_pred cCCCceecCCCeEEEEEEEecCCCCEEEEEeCCeEeccCCCeEEEE------------------------ECCCEEEEEE
Confidence 1112223345555556666566667788876542000001112221 1112346778
Q ss_pred EccCCCCeEEEEEEEEcCCCCC
Q psy574 470 TNLTVGLTYTFLVRALNSHGLS 491 (977)
Q Consensus 470 ~~L~p~t~Y~~~V~a~n~~G~s 491 (977)
.+..+...-.|.|.|.|..|..
T Consensus 539 ~~~~~~d~G~Y~C~a~N~~G~~ 560 (570)
T 3b43_A 539 SRAEPANAGKYTCQIKNEAGTQ 560 (570)
T ss_dssp SSCCTTCCEEEEEEEECSSCEE
T ss_pred CcCCHHHCEEEEEEEEECCcEE
Confidence 8888888899999999998865
No 3
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}
Probab=100.00 E-value=1.2e-42 Score=428.06 Aligned_cols=541 Identities=15% Similarity=0.159 Sum_probs=316.1
Q ss_pred CCeEEEEEEecccCceEEEEEECCeeCCCCceEEeccceEEEccCccC-CCeEEEEEEEeCCeeEEE-EEEEEEe---eC
Q psy574 114 SSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLE-DAGEYVCEAENAVGKISA-SATLTVQ---MA 188 (977)
Q Consensus 114 G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~-D~G~Y~C~a~n~~g~~~~-~~~L~V~---~~ 188 (977)
..++.|.|.+.|.|.+.+.|.|+|..+... ....+.|..+... ..+.|+|.+.+..|.... .+.+.+. .+
T Consensus 91 ~g~l~v~c~~~g~P~p~i~W~k~g~~~~~~-----~~~~~~i~~~~~~~~~l~~~~va~~~~G~~~~~~v~~~~~~~~~~ 165 (731)
T 2v5y_A 91 PGLLNVYVKVNNGPLGNPIWNISGDPTRTW-----NRAELAISTFWPNFYQVIFEVITSGHQGYLAIDEVKVLGHPCTRT 165 (731)
T ss_dssp SEEEEEEEEETTCCCCSEEEEECCCCCSSC-----EEEEEEECCCTTSCEEEEEEEEECSSCCEEEECCBEEESSCCSSS
T ss_pred cceEEEEEecCCCCccceeEEEeCCcCCce-----eEEEEEEeecCCCceEEEEEEEecCCceEEEEeeEEeeecccccc
Confidence 458999999999999999999999887532 2234666655333 348899988888776432 2223222 56
Q ss_pred CeEEecCCCcEEeeCCeEEEEEEEecCCCCeEE-EE--EcCeeeeecCCCccccEEEEEccCCceEEEEeecccCCCCeE
Q psy574 189 PIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTF-WM--LEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLI 265 (977)
Q Consensus 189 p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~-W~--~~g~~~~~~~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y 265 (977)
|.+. .+.+..+.+|++++|.|.+.|.|.+.+. |+ ++|..+... .+.........+.|.|.+++..|.|.|
T Consensus 166 p~~~-~~~~~~v~~G~~v~l~C~~~g~P~p~i~~W~~~~~g~~l~~~------~~~~~~~~~~~~~l~I~~~~~~d~g~Y 238 (731)
T 2v5y_A 166 PHFL-RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLK------EIKVTSSRRFIASFNVVNTTKRDAGKY 238 (731)
T ss_dssp CEEC-CCCCEEEETTSCEEEEEEEESCCCTTCEEEEEESSSCCEEEE------EEEECCSSEEEEEEEECSCCTTTCEEE
T ss_pred cccc-cccceEEeCCCcEEEEEEeCCCCCCceeEEEecCCCcccccc------ceEEeccccceEEEEEcccccccCeEE
Confidence 7766 6778899999999999999999999887 77 566654321 111111001124999999999999999
Q ss_pred EEEEEEcCCCc-eeEEEEEEEECCCCCCCCeEEeCCCceeecCCCcEEEEEEEcc----Cc----eEEEEECCEEcCCCC
Q psy574 266 ILCLGVNAAGS-DLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG----EG----SVQWWRGEREVGSGP 336 (977)
Q Consensus 266 ~~C~a~n~~g~-~~~~~~l~V~~~~~~~pp~i~~~p~~~~v~~g~~~~L~C~~~~----~p----~i~W~~~g~~l~~~~ 336 (977)
+ |.|.|..|. .+..+.|.|... |.....|....+ ....+.|.|.... .+ .|.|...+... .
T Consensus 239 ~-c~A~n~~G~~~s~~~~l~V~~~-----P~~~~~p~~~~~-~~~~v~l~w~~~~~~g~~~i~~Y~v~~~~~~~~~---~ 308 (731)
T 2v5y_A 239 R-CMIRTEGGVGISNYAELVVKEP-----PVPIAPPQLASV-GATYLWIQLNANSINGDGPIVAREVEYCTASGSW---N 308 (731)
T ss_dssp E-EEEEETTEEEECCCEEEEEECC-----CCBSSCCEEEEE-CSSCEEEECCCSSBSSCSCCCEEEEEEEESSSSC---E
T ss_pred E-EEEECCCCCcceeeEEEEEecC-----CCCCCCcceecc-CCceEEEEeCCcccCCCCccEEEEEEEEECCCCc---e
Confidence 9 999999997 677788999873 332222322222 4467888887643 12 46776543211 1
Q ss_pred cEEEecCceEEEeccCCCCCeEEEEEEE--cCCCceEEEEEEEEECCCCCCCcccCCCCCCCCCCCCCCCeEEeeCCCce
Q psy574 337 RVNVTGDGSLVLTDVTKEDSGEYTCVVK--SPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGL 414 (977)
Q Consensus 337 ~~~~~~~~sl~I~~v~~~d~G~Y~C~a~--n~~G~~~~s~~l~v~~~~~~~~~~~~~~~~~~~p~~P~~~~v~~~~~~sv 414 (977)
.+......++.|.++.+.+.|.|+|.|. |..|.+..+..+.+.... ..+|.+|.++.+...+.+++
T Consensus 309 ~~~~~~~~~~~i~~L~p~t~Y~~~V~A~~~N~~G~s~~S~~~~~~t~~------------~~p~~~P~~~~~~~~~~~sv 376 (731)
T 2v5y_A 309 DRQPVDSTSYKIGHLDPDTEYEISVLLTRPGEGGTGSPGPALRTRTKC------------ADPMRGPRKLEVVEVKSRQI 376 (731)
T ss_dssp EEEECCSSEEEECSCCTTCEEEEEEEEECSSTTCSCCBCCCEEEECCC------------CCCSCCCEEEEEEEECSSCE
T ss_pred EEeccCcceEEEeCCCCCCEEEEEEEEEecCCCccccCCCcEEeeecC------------CCCCCCCceeEEEeccCCeE
Confidence 2223345679999999999999999999 999988766656555332 24578899999999999999
Q ss_pred EEEEEcCCC-CCCcccceEEEEEeecCCCCCCCCCCCCcccEEE--eceecCcCeEEEEccCCCCeEEEEEEEEcCCCCC
Q psy574 415 TLAWSRNNQ-IGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVR--VATNVPSPILTVTNLTVGLTYTFLVRALNSHGLS 491 (977)
Q Consensus 415 ~lsW~~p~~-~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~--~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~G~s 491 (977)
.|+|.++.. .++..+.+|.|+|+...... ...|.. .........++|.+|.|++.|.|+|+|.|..|.|
T Consensus 377 ~l~W~~p~~~~~~~~~~~y~v~y~~~~~~~--------~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~s 448 (731)
T 2v5y_A 377 TIRWEPFGYNVTRCHSYNLTVHYCYQVGGQ--------EQVREEVSWDTENSHPQHTITNLSPYTNVSVKLILMNPEGRK 448 (731)
T ss_dssp EEEEECCCHHHHCSSSCEEEEEEEEESSSS--------EEEEEEEECCSSCSSCEEEECSCCSSCEEEEEEEEECSSCEE
T ss_pred EEEEECCCcccccceeeeEEEEEEEccCCC--------CccceeEEEEecCCcceEEECCCCCCCEEEEEEEEEcCCCCC
Confidence 999999865 23456789999998765321 012222 2334567889999999999999999999999987
Q ss_pred CCCCCCceEEeeccccccccccCCcceeecCCCCCCCcchHHHHhhcccccCCceEEEEEeeEeCCCeEEEEEEec--CC
Q psy574 492 APSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPMTSTSVKLTWEIL--NT 569 (977)
Q Consensus 492 ~~S~~s~~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~g~~~~~~~~~l~~~~~~~~~~l~~~~~~~tsv~lsW~~p--~~ 569 (977)
. |. ...+++....| . +|+ . ..+.+.. .+++|.|+|++| .+
T Consensus 449 ~-S~-~~~~~T~~~~P----~---------~p~-------------------~---~~~~~~~-~~~si~l~W~~P~~~~ 490 (731)
T 2v5y_A 449 E-SQ-ELIVQTDEDLP----G---------AVP-------------------T---ESIQGST-FEEKIFLQWREPTQTY 490 (731)
T ss_dssp E-CC-CEEEECCCCCC----C---------CCC-------------------T---TTCEEEE-ETTEEEEECCCCSCCS
T ss_pred C-Cc-eEEEEccCCCC----C---------CCC-------------------c---ceEEeee-cCCeEEEEEcCCCCCC
Confidence 4 43 23333322222 2 110 0 0133333 478999999999 57
Q ss_pred CccceEEEEEEecCCCCCc-----eEEEEeecCccceEEECCCCCCcEEEEEEEEeecceeCCCCCceEEeccCCCCCCC
Q psy574 570 DYIEGVYIYSRGLDPPASV-----AMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVRTLECEPSGV 644 (977)
Q Consensus 570 ~~i~~Y~v~y~~~~~~~~~-----~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~g~~s~~~~~~T~~~~P~~~ 644 (977)
+.|.+|+|+|+..+....+ ....+......++++|.+|+|++.|.|+|+|+|..|.|+++. +.++|.+.+|..|
T Consensus 491 g~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~s~-~~~~T~~~~P~~p 569 (731)
T 2v5y_A 491 GVITLYEITYKAVSSFDPEIDLSNQSGRVSKLGNETHFLFFGLYPGTTYSFTIRASTAKGFGPPAT-NQFTTKISAPSMP 569 (731)
T ss_dssp SCCCEEEEEEEEEEECC---CCCCCEEEEEEETTCCEEEECSCCTTEEEEEEEEEEETTEEEEEEE-EEEECCCCCCCC-
T ss_pred CCccceEEEEEECcCCCccccccCcceEEeecCCcceEEecCCCCCCEEEEEEEEEeCCccCCCcc-cEEEcCCCCCCCC
Confidence 7999999999987642211 122223336778999999999999999999999999998884 8899999999865
Q ss_pred CceeE-EEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCcce-EE-------------------------------
Q psy574 645 PQLTD-PVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSAL-IN------------------------------- 691 (977)
Q Consensus 645 P~~v~-~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~~~-~~------------------------------- 691 (977)
+..+. ....+.++|.|+|.+| ...+|.|.+|.|.|+..+.... ..
T Consensus 570 ~~~~~~~~~~~~~si~l~W~pp--~~~~g~I~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aa~~~p 647 (731)
T 2v5y_A 570 AYELETPLNQTDNTVTVMLKPA--HSRGAPVSVYQIVVEEERPRRTKKTTEILKCYPVPIHFQNASLLNSQYYFAAEFPA 647 (731)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcccccccccCCceEEEEEeCC--CCCCCceEEEEEEEEecCCCCCccccccccCcccccCHHHHhhcCCcceEEEEcCh
Confidence 54332 2345778899999988 8889999999999887541100 00
Q ss_pred --------EEecC--CcCeEEecCCCCCceEEEEEEEEcCCCcCCCCCceEEeecC
Q psy574 692 --------MTVSA--STPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTS 737 (977)
Q Consensus 692 --------~~~~~--~~~~~~l~~L~p~t~Y~~~V~A~~~~G~g~~S~~~~~~t~~ 737 (977)
.++.. ....+.+..|+|++.|.|+|+|+|.+|.|..+..+.+.|..
T Consensus 648 ~~~~~~~~~~vg~~~~~~~~~n~~L~p~~~Y~i~v~A~s~~g~~~~~~~v~~~t~~ 703 (731)
T 2v5y_A 648 DSLQAAQPFTIGDNKTYNGYWNTPLLPYKSYRIYFQAASRANGETKIDCVQVATKG 703 (731)
T ss_dssp --------------------------------------------------------
T ss_pred hhCcccCCEEECCCCeECCEECCCCCCCCceEEEEEEEEecCCCcEeeeEEEeccc
Confidence 00000 00123345599999999999999999999999999998883
No 4
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}
Probab=100.00 E-value=8.5e-42 Score=390.30 Aligned_cols=364 Identities=27% Similarity=0.432 Sum_probs=314.4
Q ss_pred ccccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCC-----CCCCCeEEEE
Q psy574 4 LREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDS-----RKTDDGRYQC 78 (977)
Q Consensus 4 l~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v-----~~~D~G~Y~C 78 (977)
....|..+|.++.+.+|+.++|.|.+..+.|.+.|.|+|||..+......|+....++.|.|.++ +.+|+|.|+|
T Consensus 20 ~~~~~~~~P~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~D~G~Y~C 99 (403)
T 3laf_A 20 RSLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQC 99 (403)
T ss_dssp CSSEEEECCCCEEECTTCCEEECCEEECTTCCCEEEEEETTEECCTTSCTTEEECTTSCEEECSCCCBTTBCSSCEEEEE
T ss_pred eeEEEEeCCCceEEecCCcEEEEEEcCCCCCCceEEEEECCEECccCCcccEEEecCCcEEEeeeeccCCCCCcceEEEE
Confidence 34667889999999999999999999555788999999999999766677888888999999988 6779999999
Q ss_pred EEEecC-ceeeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCC----CCceEEeccceE
Q psy574 79 VVKNVA-GTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMP----EDRMSVLPSRSL 153 (977)
Q Consensus 79 ~a~n~~-g~~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~----~~~~~~~~~~~L 153 (977)
.+.+.. +...+..+.|.|..+|.+...+....+.+|+++.|.|.+.|.|.+.+.|+|++..+. ..+.....++.|
T Consensus 100 ~~~~~~~~~~~s~~~~l~v~~p~~~~~~~~~~~~~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L 179 (403)
T 3laf_A 100 EASLGDSGSIISRTAKVMVAGPLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGAL 179 (403)
T ss_dssp EEECGGGCEEECCCEEEEECCCCEECSCCCCEEEETTSCEEECCCEECSSCCEEEEEESSSBCCCCTTCCSEEECTTSCE
T ss_pred EEEeCCCccEEEEEEEEEecCCCccccCCCcEEEEcCCeEEEEEEEcccCCCeEEEEECCEeccccCCceEEEEcCCceE
Confidence 999654 554567788999999999988999999999999999999999999999999998873 234555577899
Q ss_pred EEccCccCCCeEEEEEEEeCCee-EEEEEEEEEeeCC------eEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcC
Q psy574 154 QLSDVRLEDAGEYVCEAENAVGK-ISASATLTVQMAP------IVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEG 226 (977)
Q Consensus 154 ~I~~v~~~D~G~Y~C~a~n~~g~-~~~~~~L~V~~~p------~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g 226 (977)
.|.+++.+|+|.|+|.|.|..+. ....+.|.|...| .+...+....+.+|+.++|.|.+.+.|.+.+.|++++
T Consensus 180 ~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~ 259 (403)
T 3laf_A 180 QISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGE 259 (403)
T ss_dssp EECSCCGGGCEEEEEEEECSSCCCBCCCEEEEEECCCCCCEEEEEEECCCCEEEETTSCEEECCEEEEESCCEEEEEETT
T ss_pred EEcccccccCEEEEEEEEcCCCceeccceeEEEecCCCcccCceEecCCCceEecCCCcEEEEEEcCCCCCCeEEEEECC
Confidence 99999999999999999998776 3456778887555 3455677788999999999999999999999999999
Q ss_pred eeeeecCCCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEECCCCCCCCeEEeCCCceeec
Q psy574 227 NRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLP 306 (977)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~~~~~~pp~i~~~p~~~~v~ 306 (977)
..+.. ...++.... ...|.|.++..+|+|.|+ |.|.|..|.....+.|.|.. +|.+...+.+..+.
T Consensus 260 ~~~~~----~~~~~~~~~----~~~L~i~~~~~~d~G~Y~-C~a~n~~g~~~~~~~l~V~~-----~p~~~~~~~~~~~~ 325 (403)
T 3laf_A 260 EVIQL----RSKKYSLLG----GSNLLISNVTDDDSGTYT-CVVTYKNENISASAELTVLV-----PPWFLNHPSNLYAY 325 (403)
T ss_dssp EECCC----SSSSEEEET----TTEEEECSCCGGGCEEEE-EEEEETTEEEEEEEEEEEEE-----EEEEEECCCCEECC
T ss_pred eeccC----CCceEEECC----ccEEEEeCCCHHHCEEEE-EEEEcCCCceEEEEEEEEEC-----CCcEeecCcceEEe
Confidence 87642 223333332 238999999999999999 99999999999999999988 78888889899999
Q ss_pred CCCcEEEEEEEcc--CceEEEEECCEEcCCCCcEEEecCceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEECC
Q psy574 307 LRSEARLRCQVRG--EGSVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESP 381 (977)
Q Consensus 307 ~g~~~~L~C~~~~--~p~i~W~~~g~~l~~~~~~~~~~~~sl~I~~v~~~d~G~Y~C~a~n~~G~~~~s~~l~v~~~ 381 (977)
.|+.+.|.|.+.+ .+.+.|+++|..+....++.+...++|.|.++...|.|.|+|.|.|..|....++.|.|.+|
T Consensus 326 ~g~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~P 402 (403)
T 3laf_A 326 ESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGSNLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVPKP 402 (403)
T ss_dssp TTCCEEECCEEEEESCCEEEEEETTEECCCSSSEEEETTTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEECCCC
T ss_pred cCCeEEEEEEEeeccCCEEEEEECCEECCCCCcEEEecCccEEEeccccccCEEEEEEEEcCCceEEEEEEEEEeCC
Confidence 9999999999998 67899999999998888888888889999999999999999999999999999999988754
No 5
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Probab=100.00 E-value=9.6e-39 Score=388.32 Aligned_cols=608 Identities=17% Similarity=0.198 Sum_probs=390.5
Q ss_pred cceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEee--------c---------CCCceEEEecCcEEEEcCCC
Q psy574 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPID--------F---------ENSKRLRLVDGTNLAIQDSR 69 (977)
Q Consensus 7 ~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~--------~---------~~~~r~~~~~~g~L~I~~v~ 69 (977)
+|.++|.++.+.+|++++|.|.. .+.+...|.|+|+..... . ...+|..+..+++|.|.+++
T Consensus 1 ~v~~~p~~~~v~~G~~v~L~C~~-~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~gr~~~~~~~sL~I~~v~ 79 (642)
T 1e07_A 1 KLTIESTPFNVAEGKEVLLLVHN-LPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNASLLIQNII 79 (642)
T ss_pred CceEeccCCcccccccEEEEEcc-CCCCceEEEEECCcccCCcceEEEEEccccccccCccccCceeeccCCcEEECCCC
Confidence 37789999999999999999987 445677999999442210 0 11346677778899999999
Q ss_pred CCCCeEEEEEEEecCceeeeEeEEEEEEc---CCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCC-ce
Q psy574 70 KTDDGRYQCVVKNVAGTRESTDAVLRVLV---KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED-RM 145 (977)
Q Consensus 70 ~~D~G~Y~C~a~n~~g~~~s~~~~l~V~~---~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~-~~ 145 (977)
.+|+|.|+|.+.+.........+.|.|.. +|.+.. +....+.+|+.+.|.|.+.+ |.+.+.|+|++..+..+ ++
T Consensus 80 ~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~i~~-~~~~~v~~g~~v~l~C~~~~-p~~~v~W~~~g~~l~~~~~~ 157 (642)
T 1e07_A 80 QNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISS-NNSKPVEDKDAVAFTCEPET-QDATYLWWVNNQSLPVSPRL 157 (642)
T ss_pred cccCcEEEEEEEcCCCeEEEEEEEEEecccCCCCcEEc-cCceeEecCCcEEEEEECCC-CCeeEEEEECCeECCCCCce
Confidence 99999999999986543345566788875 344443 33567889999999999988 89999999999988653 44
Q ss_pred EEe-ccceEEEccCccCCCeEEEEEEEeCCee-EEEEEEEEEeeCC-eEEecCCCcEEeeCCeEEEEEEEecCCCCeEEE
Q psy574 146 SVL-PSRSLQLSDVRLEDAGEYVCEAENAVGK-ISASATLTVQMAP-IVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFW 222 (977)
Q Consensus 146 ~~~-~~~~L~I~~v~~~D~G~Y~C~a~n~~g~-~~~~~~L~V~~~p-~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W 222 (977)
.+. .++.|.|.+++.+|+|.|+|.|.|..+. .+..+.|.|..+| .+...|.+..+.+|+.++|.|.+.+.|.+.+.|
T Consensus 158 ~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~G~~~~l~C~~~g~p~~~i~W 237 (642)
T 1e07_A 158 QLSNGNRTLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSW 237 (642)
T ss_pred EEcCCCCEEEEeCCCcccCeeEEEEEecCCCCcccceEEEEEEeCCCCcEEecCCcccccCCEEEEEEEcCCCCCcEEEE
Confidence 443 4578999999999999999999998876 4567889998544 455567778899999999999999999999999
Q ss_pred EEcCeeeeecCCCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEE--EEEEECCCCCCCCeEEeCC
Q psy574 223 MLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARA--SLTVSGPDPNPPPVILFGP 300 (977)
Q Consensus 223 ~~~g~~~~~~~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~--~l~V~~~~~~~pp~i~~~p 300 (977)
+++|..+. ....|.|.++..+|+|.|+ |.|.|..|....+. .|.|... ..+|.+.. +
T Consensus 238 ~~~g~~i~-----------------~~~~L~i~~~~~~d~G~Y~-C~a~n~~g~~~~s~~~~v~v~~~--~~~p~i~~-~ 296 (642)
T 1e07_A 238 FVNGTFQQ-----------------STQELFIPNITVNNSGSYT-CQAHNSDTGLNRTTVTTITVYAE--PPKPFITS-N 296 (642)
T ss_pred EECCeEcc-----------------cCCceEEecccccCCeEEE-EEEEeCCCceEEeeeEEEEEEcc--CCCCEEEc-C
Confidence 99997652 1127999999999999999 99999998765544 4555442 22444443 3
Q ss_pred CceeecCCCcEEEEEEEcc-CceEEEEECCEEcCCCCcEEEec-CceEEEeccCCCCCeEEEEEEEcCCCce-EEEEEEE
Q psy574 301 ANQTLPLRSEARLRCQVRG-EGSVQWWRGEREVGSGPRVNVTG-DGSLVLTDVTKEDSGEYTCVVKSPHGSA-SWSASLR 377 (977)
Q Consensus 301 ~~~~v~~g~~~~L~C~~~~-~p~i~W~~~g~~l~~~~~~~~~~-~~sl~I~~v~~~d~G~Y~C~a~n~~G~~-~~s~~l~ 377 (977)
....+..|+.+.|.|.+.+ ++.+.|+++|..+....++.+.. .++|.|.++...|+|.|+|.|.|..|.. +..+.|.
T Consensus 297 ~~~~~~~g~~v~l~C~~~~~p~~v~W~~~g~~l~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~ 376 (642)
T 1e07_A 297 NSNPVEDEDAVALTCEPEIQNTTYLWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILN 376 (642)
T ss_pred CceeEecCCcEEEEEECCCCCccEEEEECCccCCCcCCEEEeCCCCEEEEeccCcccCeeEEEEEeCCCCCcceeeEEEE
Confidence 3445666888999999999 77999999999987777776653 4689999999999999999999999874 4557787
Q ss_pred EECCCCCCCcccCCCCCCCCCCCCCCCeEEeeCCCceEEEEEcCCCCCCcccceEEEEEeecCCCCCCCCCCCCcccEEE
Q psy574 378 FESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVR 457 (977)
Q Consensus 378 v~~~~~~~~~~~~~~~~~~~p~~P~~~~v~~~~~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~ 457 (977)
|..++.... . .|.... ......+.|....... +.. .| .|..
T Consensus 377 V~~~p~~~~---------~---~~~~~~--~~~g~~~~l~C~~~g~----p~~--~i-------------------~W~~ 417 (642)
T 1e07_A 377 VLYGPDDPT---------I---SPSYTY--YRPGVNLSLSCHAASN----PPA--QY-------------------SWLI 417 (642)
T ss_pred EEcCCCCCe---------e---cCCceE--ecCCCcEEEEEEcCcc----CCC--eE-------------------EEEE
Confidence 775432111 0 111111 1122344444443221 000 12 2222
Q ss_pred ecee-cCcCeEEEEccCCCCeEEEEEEEEcCCCCCCCCCCCceEEeeccccccccccCCcceeecCCCCCCCcchHHHHh
Q psy574 458 VATN-VPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRAR 536 (977)
Q Consensus 458 ~~~~-~~~~~~~i~~L~p~t~Y~~~V~a~n~~G~s~~S~~s~~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~g~~~~~~~ 536 (977)
.... .....+.|.++.+.....|+|.|.|..|....+.. ..+.+....+ .|. +. ++
T Consensus 418 ~g~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~-~~v~v~~~~~--~p~------i~-~~------------- 474 (642)
T 1e07_A 418 DGNIQQHTQELFISNITEKNSGLYTCQANNSASGHSRTTV-KTITVSAELP--KPS------IS-SN------------- 474 (642)
T ss_pred CCEEcCCCceEEEccCChhhCeEEEEEEEcCCCCCcccce-EEEEEeccCC--Cce------Ee-cC-------------
Confidence 1111 12345788899999999999999999886644321 2222211100 000 00 00
Q ss_pred hcccccCCceEEEEEeeEeCCCeEEEEEEecCCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEE
Q psy574 537 QHLQEGGGSLIELTEVKPMTSTSVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFF 616 (977)
Q Consensus 537 ~~l~~~~~~~~~~l~~~~~~~tsv~lsW~~p~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~ 616 (977)
-.........+.|.+.... ..-.+.|...+....... ..........+.|.++.......++
T Consensus 475 -------------~~~~v~~g~~v~l~C~~~~----~~~~i~W~~~g~~l~~~~-~~~~~~~~~~L~i~~v~~~d~G~Y~ 536 (642)
T 1e07_A 475 -------------NSKPVEDKDAVAFTCEPEA----QNTTYLWWVNGQSLPVSP-RLQLSNGNRTLTLFNVTRNDARAYV 536 (642)
T ss_pred -------------CceeecCCCeEEEEEECCC----CCcEEEEEECCEeCCCCC-cEEEcCCCcEEEEeecChhcCceEE
Confidence 0011112334444444331 012233332221000000 0011122356888887766666667
Q ss_pred EEEeecceeCCC-CCceEEeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCcceEEEEec
Q psy574 617 LVPFFGSVDGKP-SNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVS 695 (977)
Q Consensus 617 V~a~n~~g~g~~-s~~~~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~~~~~~~~~ 695 (977)
..|.|..|.... +..+.+...+..+...|.++.+.. ...+.|....- ..+. -.|.|...+.. +.
T Consensus 537 C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~v~~--g~~~~l~C~~~--g~p~-----p~v~W~~~g~~------i~ 601 (642)
T 1e07_A 537 CGIQNSVSANRSDPVTLDVLYGPDTPIISPPDSSYLS--GANLNLSCHSA--SNPS-----PQYSWRINGIP------QQ 601 (642)
T ss_pred EEeEcCCCCccCCCEEEEEEeCCCcceecCCceeEEc--CCcEEEEEEec--cCCC-----CeEEEEECCEE------Cc
Confidence 777787775322 223334332222322344443332 34566666532 1111 13444442211 11
Q ss_pred CCcCeEEecCCCCCceEEEEEEEEcCCCcCCCCCceEEe
Q psy574 696 ASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLS 734 (977)
Q Consensus 696 ~~~~~~~l~~L~p~t~Y~~~V~A~~~~G~g~~S~~~~~~ 734 (977)
....+.|.++.+...-.++..|.|.+|....+..+.++
T Consensus 602 -~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~s~~l~V~ 639 (642)
T 1e07_A 602 -HTQVLFIAKITPNNNGTYACFVSNLATGRNNSIVKSIT 639 (642)
T ss_pred -cCceEEECcccccCCeEEEEEEEecccCcceeEEEEEE
Confidence 23467888888877777888899999987666555554
No 6
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*
Probab=100.00 E-value=7.1e-41 Score=379.86 Aligned_cols=358 Identities=23% Similarity=0.397 Sum_probs=289.0
Q ss_pred ccccceecccceEE---eCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCC-CCCCCeEEEEE
Q psy574 4 LREEFRVQPKSQRV---AAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDS-RKTDDGRYQCV 79 (977)
Q Consensus 4 l~~~~~~~p~~~~v---~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v-~~~D~G~Y~C~ 79 (977)
..|.|..+|.++.+ .+|+.+.|.|.+ .|.|.|.|.|+|||..+....+.|+.+. +|.|.|.++ +.+|+|.|+|+
T Consensus 4 ~~P~f~~~P~~~~~~~~~eg~~v~L~C~~-~g~P~p~i~W~k~g~~l~~~~~~~~~~~-~g~l~i~~~~~~~D~G~Y~C~ 81 (384)
T 3kld_A 4 SGPVFVQEPSHVMFPLDSEEKKVKLSCEV-KGNPKPHIRWKLNGTDVDIGMDFRYSVV-DGSLLINNPNKTQDAGTYQCI 81 (384)
T ss_dssp EEEEEEECCCCEEEETTCSCSEEEECCEE-EEESCCEEEEEETTEECCC----CEEEE-TTEEEEESCCHHHHCEEEEEE
T ss_pred CCCEEEeCCcceEeecCCCCCeEEEEeEe-cCCCCCEEEEEECCEECcCCCCccEEEE-CCEEEEcCCCCcccCEEEEEE
Confidence 35789999999877 689999999999 8999999999999999965556677665 678888876 78999999999
Q ss_pred EEecCceeeeEeEEEEEEcCCeEEeC-CCceEEeCCCeEEEEEEe-cccCceEEEEEECCeeCCCC-ceEE-eccceEEE
Q psy574 80 VKNVAGTRESTDAVLRVLVKPYIIRG-PKDTTVSASSIIVFECSV-GGDAVLTVHWKRLGSAMPED-RMSV-LPSRSLQL 155 (977)
Q Consensus 80 a~n~~g~~~s~~~~l~V~~~P~~~~~-p~~~~v~~G~~v~l~C~v-~g~p~~~i~W~k~~~~l~~~-~~~~-~~~~~L~I 155 (977)
|.|..|...+..+.|.|...+.+... +....+.+|+.+.|.|.+ .+.|.+.+.|++++..+... +..+ ..++.|.|
T Consensus 82 A~N~~G~~~s~~~~l~v~~~~~~~~~~~~~~~v~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~L~I 161 (384)
T 3kld_A 82 ATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGNLYI 161 (384)
T ss_dssp EEETTEEEECCCEEEEEEEECCCSCCCCCCEEEEETCCEEECCCCCSEESCEEEEEEETTEECCCSSSEEECTTTCCEEE
T ss_pred EEcCcccEEecceEEEEecccccccCCCCceeEEcCCCeEEecCCCCCCCCeEEEEEECCCCCEeeccEEEEcCCCcEEE
Confidence 99999987777788888765555443 355788999999999986 35678899999999887543 2222 25678999
Q ss_pred ccCccCCCeEEEEEEEeCCeeEEE---EEEEEEe-------eCCeEE-ecCCCcEEeeCCeEEEEEEEecCCCCeEEEEE
Q psy574 156 SDVRLEDAGEYVCEAENAVGKISA---SATLTVQ-------MAPIVR-ERPSDLRLEVGRDAVFLCGIEGSPPPSTFWML 224 (977)
Q Consensus 156 ~~v~~~D~G~Y~C~a~n~~g~~~~---~~~L~V~-------~~p~~~-~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~ 224 (977)
.+++.+|+|.|+|.|.|..+.... ...+.+. .+|.+. ..|....+.+|+.+.|.|.+.|.|.|.+.|++
T Consensus 162 ~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k 241 (384)
T 3kld_A 162 AKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRR 241 (384)
T ss_dssp SSCCGGGCEEEEEEEEETTTTEEEECCCEEEEEEEEEECCCEEEEEEEECCSEEEEETTSCEEEEEEEEEESCCEEEEEE
T ss_pred eecCHHHCceEEEEEecccccceeeCCceEEEEccCCcccccCCceeecCCCceEecCCCcEEEEEEEeecCCCcEEEEe
Confidence 999999999999999998764321 1222222 234443 34666788999999999999999999999999
Q ss_pred cCeeeeecCCCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEECCCCCCCCeEEeCCCcee
Q psy574 225 EGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQT 304 (977)
Q Consensus 225 ~g~~~~~~~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~~~~~~pp~i~~~p~~~~ 304 (977)
++..... ...+ . .. ....|.|.+++.+|+|.|+ |.|.|..|.....+.|.|.. +|.+...+.+..
T Consensus 242 ~~~~~~~----~~~~--~-~~--~~~~L~I~~v~~~D~G~Y~-C~a~N~~G~~~~~~~l~v~~-----~P~~~~~~~~~~ 306 (384)
T 3kld_A 242 ADGKPIA----RKAR--R-HK--SNGILEIPNFQQEDAGSYE-CVAENSRGKNVAKGQLTFYA-----QPNWVQIINDIH 306 (384)
T ss_dssp TTCCCCC----TTCE--E-CT--TSCEEEECSCCGGGCEEEE-EEEEETTEEEEEEEEEEEEE-----EEEEEECCCCEE
T ss_pred CCCcccc----ccce--e-cC--CCcEEEECCCChhhCEEEE-EEEEcCCCeEEEEEEEEEec-----CCccccCCCceE
Confidence 6543211 1111 1 11 2238999999999999999 99999999999999999988 788888888999
Q ss_pred ecCCCcEEEEEEEcc--CceEEEEECCEEcCCCCcEEEecCceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEE
Q psy574 305 LPLRSEARLRCQVRG--EGSVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFE 379 (977)
Q Consensus 305 v~~g~~~~L~C~~~~--~p~i~W~~~g~~l~~~~~~~~~~~~sl~I~~v~~~d~G~Y~C~a~n~~G~~~~s~~l~v~ 379 (977)
+..|+.+.|.|.+.| .|.|.|+++|..+....++.+ .+++|.|.++...|+|.|+|.|.|..|....++.|.|.
T Consensus 307 v~~g~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~-~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V~ 382 (384)
T 3kld_A 307 VAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQI-EQGTLNITIVNLSDAGMYQCVAENKHGVIFSSAELSVI 382 (384)
T ss_dssp ECTTCCEEEECEEEEESCCEEEEEETTEECCCBTTEEE-ETTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred ecCCCCEEEEeECCccCCCeEEEEECCEECCCCccEEE-eCCEEEEeecChhhCEEEEEEEEeCCceEEeceEEEEe
Confidence 999999999999999 689999999999987777775 46799999999999999999999999999999999885
No 7
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}
Probab=100.00 E-value=3.2e-40 Score=406.43 Aligned_cols=447 Identities=18% Similarity=0.225 Sum_probs=337.5
Q ss_pred CCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCccccEEEEEccCCceEEEEeec-ccCCCCeEEEEEEEcCCCceeEEE
Q psy574 203 GRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNV-SRTAAPLIILCLGVNAAGSDLARA 281 (977)
Q Consensus 203 G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~s~L~I~~v-~~~d~G~Y~~C~a~n~~g~~~~~~ 281 (977)
...+.|.|.+.|.|.+.+.|.++|.++... .. + .+.|..+ .....+.|. |++.+..|.... .
T Consensus 91 ~g~l~v~c~~~g~P~p~i~W~k~g~~~~~~---~~----------~--~~~i~~~~~~~~~l~~~-~va~~~~G~~~~-~ 153 (731)
T 2v5y_A 91 PGLLNVYVKVNNGPLGNPIWNISGDPTRTW---NR----------A--ELAISTFWPNFYQVIFE-VITSGHQGYLAI-D 153 (731)
T ss_dssp SEEEEEEEEETTCCCCSEEEEECCCCCSSC---EE----------E--EEEECCCTTSCEEEEEE-EEECSSCCEEEE-C
T ss_pred cceEEEEEecCCCCccceeEEEeCCcCCce---eE----------E--EEEEeecCCCceEEEEE-EEecCCceEEEE-e
Confidence 357899999999999999999999765211 01 1 3444433 222235666 666666554332 2
Q ss_pred EEEEECCCCCCCCeEEeCCCceeecCCCcEEEEEEEcc--CceEE-EE--ECCEEcCCCCcEEEec---CceEEEeccCC
Q psy574 282 SLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG--EGSVQ-WW--RGEREVGSGPRVNVTG---DGSLVLTDVTK 353 (977)
Q Consensus 282 ~l~V~~~~~~~pp~i~~~p~~~~v~~g~~~~L~C~~~~--~p~i~-W~--~~g~~l~~~~~~~~~~---~~sl~I~~v~~ 353 (977)
.+.+.......+|.+. .+.+..+..|+.+.|.|.+.+ .|.+. |+ ++|..+.......+.. .++|.|.++..
T Consensus 154 ~v~~~~~~~~~~p~~~-~~~~~~v~~G~~v~l~C~~~g~P~p~i~~W~~~~~g~~l~~~~~~~~~~~~~~~~l~I~~~~~ 232 (731)
T 2v5y_A 154 EVKVLGHPCTRTPHFL-RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTK 232 (731)
T ss_dssp CBEEESSCCSSSCEEC-CCCCEEEETTSCEEEEEEEESCCCTTCEEEEEESSSCCEEEEEEEECCSSEEEEEEEECSCCT
T ss_pred eEEeeecccccccccc-cccceEEeCCCcEEEEEEeCCCCCCceeEEEecCCCccccccceEEeccccceEEEEEccccc
Confidence 2334333334477776 566889999999999999999 56677 77 6776553322111111 35799999999
Q ss_pred CCCeEEEEEEEcCCCc-eEEEEEEEEECCCCCCCcccCCCCCCCCCCCCCCCeEEeeCCCceEEEEEcCCCCCCcccceE
Q psy574 354 EDSGEYTCVVKSPHGS-ASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGY 432 (977)
Q Consensus 354 ~d~G~Y~C~a~n~~G~-~~~s~~l~v~~~~~~~~~~~~~~~~~~~p~~P~~~~v~~~~~~sv~lsW~~p~~~~~~~i~~Y 432 (977)
.|.|.|+|.|.|..|. .+..+.|.|..+ |.+|..+.+...+.+++.|+|.++...++.++.+|
T Consensus 233 ~d~g~Y~c~A~n~~G~~~s~~~~l~V~~~----------------P~~~~~p~~~~~~~~~v~l~w~~~~~~g~~~i~~Y 296 (731)
T 2v5y_A 233 RDAGKYRCMIRTEGGVGISNYAELVVKEP----------------PVPIAPPQLASVGATYLWIQLNANSINGDGPIVAR 296 (731)
T ss_dssp TTCEEEEEEEEETTEEEECCCEEEEEECC----------------CCBSSCCEEEEECSSCEEEECCCSSBSSCSCCCEE
T ss_pred ccCeEEEEEEECCCCCcceeeEEEEEecC----------------CCCCCCcceeccCCceEEEEeCCcccCCCCccEEE
Confidence 9999999999999998 666788888743 56666777778888999999998876567889999
Q ss_pred EEEEeecCCCCCCCCCCCCcccEEEeceecCcCeEEEEccCCCCeEEEEEEEE--cCCCCCCCCCCCceEEeeccccccc
Q psy574 433 QVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVGLTYTFLVRAL--NSHGLSAPSPLSDEIVLRGTFSEGI 510 (977)
Q Consensus 433 ~I~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~--n~~G~s~~S~~s~~~~~~~~~p~~~ 510 (977)
.|+|+.... .|.... .....+++|.+|.|++.|.|+|+|. |..|.+.+|... .+.+....|
T Consensus 297 ~v~~~~~~~------------~~~~~~-~~~~~~~~i~~L~p~t~Y~~~V~A~~~N~~G~s~~S~~~-~~~t~~~~p--- 359 (731)
T 2v5y_A 297 EVEYCTASG------------SWNDRQ-PVDSTSYKIGHLDPDTEYEISVLLTRPGEGGTGSPGPAL-RTRTKCADP--- 359 (731)
T ss_dssp EEEEEESSS------------SCEEEE-ECCSSEEEECSCCTTCEEEEEEEEECSSTTCSCCBCCCE-EEECCCCCC---
T ss_pred EEEEEECCC------------CceEEe-ccCcceEEEeCCCCCCEEEEEEEEEecCCCccccCCCcE-EeeecCCCC---
Confidence 999987532 676554 3456899999999999999999999 999999887653 233312222
Q ss_pred cccCCcceeecCCCCCCCcchHHHHhhcccccCCceEEEEEeeEeCCCeEEEEEEec----CCCccceEEEEEEecCCCC
Q psy574 511 FSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPMTSTSVKLTWEIL----NTDYIEGVYIYSRGLDPPA 586 (977)
Q Consensus 511 p~~~~~~~~~~~P~~~~~g~~~~~~~~~l~~~~~~~~~~l~~~~~~~tsv~lsW~~p----~~~~i~~Y~v~y~~~~~~~ 586 (977)
+.+|.++++...++++|.|+|++| .+..+.+|.|+|+.... .
T Consensus 360 ---------------------------------~~~P~~~~~~~~~~~sv~l~W~~p~~~~~~~~~~~y~v~y~~~~~-~ 405 (731)
T 2v5y_A 360 ---------------------------------MRGPRKLEVVEVKSRQITIRWEPFGYNVTRCHSYNLTVHYCYQVG-G 405 (731)
T ss_dssp ---------------------------------SCCCEEEEEEEECSSCEEEEEECCCHHHHCSSSCEEEEEEEEESS-S
T ss_pred ---------------------------------CCCCceeEEEeccCCeEEEEEECCCcccccceeeeEEEEEEEccC-C
Confidence 223478999999999999999998 25678899999998864 2
Q ss_pred CceEE---EEeecCccceEEECCCCCCcEEEEEEEEeecceeCCCCCceEEeccCCCCCCCC-ceeEEEEecCcEEEEEe
Q psy574 587 SVAML---TVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVRTLECEPSGVP-QLTDPVLLNATSVLLKW 662 (977)
Q Consensus 587 ~~~~~---~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~g~~s~~~~~~T~~~~P~~~P-~~v~~~~~~~~sv~v~W 662 (977)
.+... .+........++|.+|+|++.|.|+|+|+|..|.| .|..+.++|.+++|..+| .++.... ++++|.|+|
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~s-~S~~~~~~T~~~~P~~p~~~~~~~~~-~~~si~l~W 483 (731)
T 2v5y_A 406 QEQVREEVSWDTENSHPQHTITNLSPYTNVSVKLILMNPEGRK-ESQELIVQTDEDLPGAVPTESIQGST-FEEKIFLQW 483 (731)
T ss_dssp SEEEEEEEECCSSCSSCEEEECSCCSSCEEEEEEEEECSSCEE-ECCCEEEECCCCCCCCCCTTTCEEEE-ETTEEEEEC
T ss_pred CCccceeEEEEecCCcceEEECCCCCCCEEEEEEEEEcCCCCC-CCceEEEEccCCCCCCCCcceEEeee-cCCeEEEEE
Confidence 22211 23444667899999999999999999999999998 488999999999998766 4666554 468999999
Q ss_pred eCCCCCCCCeeeeEEEEEEEecCC--------cceEEEEecCCcCeEEecCCCCCceEEEEEEEEcCCCcCCCCCceEEe
Q psy574 663 KPPPVGTHNGVIRTYQIIVGGGNN--------SALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLS 734 (977)
Q Consensus 663 ~~p~~~~~ng~i~~Y~v~~~~~~~--------~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~~G~g~~S~~~~~~ 734 (977)
++| ...||.|.+|+|+|+..+. .........++.++++|.+|+|++.|.|+|+|+|.+|.|++|. +.++
T Consensus 484 ~~P--~~~~g~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~s~-~~~~ 560 (731)
T 2v5y_A 484 REP--TQTYGVITLYEITYKAVSSFDPEIDLSNQSGRVSKLGNETHFLFFGLYPGTTYSFTIRASTAKGFGPPAT-NQFT 560 (731)
T ss_dssp CCC--SCCSSCCCEEEEEEEEEEECC---CCCCCEEEEEEETTCCEEEECSCCTTEEEEEEEEEEETTEEEEEEE-EEEE
T ss_pred cCC--CCCCCCccceEEEEEECcCCCccccccCcceEEeecCCcceEEecCCCCCCEEEEEEEEEeCCccCCCcc-cEEE
Confidence 998 6789999999999988541 1234455677889999999999999999999999999999994 7777
Q ss_pred ecCCC
Q psy574 735 LTSGP 739 (977)
Q Consensus 735 t~~~~ 739 (977)
|....
T Consensus 561 T~~~~ 565 (731)
T 2v5y_A 561 TKISA 565 (731)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 76544
No 8
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Probab=100.00 E-value=1.2e-38 Score=362.47 Aligned_cols=377 Identities=16% Similarity=0.239 Sum_probs=292.3
Q ss_pred CCeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEc--CeeeeecCCCccccEEEEEccCCceEEEEeecccCCCCeE
Q psy574 188 APIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLE--GNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLI 265 (977)
Q Consensus 188 ~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~--g~~~~~~~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y 265 (977)
+|.+.. +.+..+.+|+.++|.|.+.|.|.+.|.|+|+ |..+.........++.+... .+...|.|.+++.+|+|.|
T Consensus 1 ~P~i~~-~~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~L~i~~v~~~D~G~Y 78 (389)
T 2jll_A 1 QPHIIQ-LKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQ-HGSSSLHIKDVKLSDSGRY 78 (389)
T ss_dssp CCEEEE-CCCEEEETTSEEEEEEEEECSSCCEEEEEETTTTEEECC--CCSSSSEEEEEC-SSEEEEEEESCCGGGCEEE
T ss_pred CCeEEe-cCceEEeCCCeEEEEEEeecccCCeEEEEeCCCCceeccCcCCCCCeEEEecc-CCcceEEEcccChhhCEEE
Confidence 355555 6677888999999999999999999999999 76664322223567776653 3456999999999999999
Q ss_pred EEEEEEcCCCceeEEEEEEEECCCCCCCCeEEeCCCceeecCCCcEEEEEEEcc--CceEEEEECCEEcCCCC--cEEEe
Q psy574 266 ILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG--EGSVQWWRGEREVGSGP--RVNVT 341 (977)
Q Consensus 266 ~~C~a~n~~g~~~~~~~l~V~~~~~~~pp~i~~~p~~~~v~~g~~~~L~C~~~~--~p~i~W~~~g~~l~~~~--~~~~~ 341 (977)
+ |.|.|..|.....+.|.|.. +|.+...+....+..|+.+.|.|.+.+ .+.+.|+++|..+.... ++.+.
T Consensus 79 ~-C~a~n~~g~~~~~~~l~V~~-----~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~l~~~~~~~~~~~ 152 (389)
T 2jll_A 79 D-CEAASRIGGHQKSMYLDIEY-----APKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTY 152 (389)
T ss_dssp E-EEEECSSCEEEEEEEEEEEE-----EEEECCSCCEEEECTTCCEEEEECEEEESCCEEEEEETTEESSCTTCTTEEEE
T ss_pred E-EEEEeCCCCcceEEEEEEEe-----CCEEecCcceEEeccCCEEEEEEEEEecCCCeEEEEECCccCCcccCceEEEe
Confidence 9 99999999999999999997 677777666667899999999999999 77899999999987653 55554
Q ss_pred cC---ceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEECCCCCCCcccCCCCCCCCCCCCCCCeEEeeCCCceEEEE
Q psy574 342 GD---GSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGLTLAW 418 (977)
Q Consensus 342 ~~---~sl~I~~v~~~d~G~Y~C~a~n~~G~~~~s~~l~v~~~~~~~~~~~~~~~~~~~p~~P~~~~v~~~~~~sv~lsW 418 (977)
.+ ..|.|.++...|.|.|+|.|.|..|.......+.+. ..|.+|.++.+...+..++.|+|
T Consensus 153 ~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~----------------~~P~~P~~~~~~~~~~~~~~l~w 216 (389)
T 2jll_A 153 STGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALA----------------DVPSSPYGVKIIELSQTTAKVSF 216 (389)
T ss_dssp ECSSCEEEEECCCSTTSSEEEEEEEEETTEEEEEEEEEEEC----------------CCCCCCEEEEEEEECSSCEEEEE
T ss_pred ccCCEEEEEECCCChhhCEEEEEEEEcCCCcEEEEEEEEec----------------CCCCCCcceEEeeccCCEEEEEE
Confidence 33 369999999999999999999999998888877774 44778888888888889999999
Q ss_pred EcCCCCCCcccceEEEEEeecCCCCCCCCCCCCcccEEEeceecCcCeEEEEccCCCCeEEEEEEEEcCCCCCCCCCCCc
Q psy574 419 SRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSD 498 (977)
Q Consensus 419 ~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~G~s~~S~~s~ 498 (977)
.++...++.++..|.|+++..... .|.........
T Consensus 217 ~~p~~~~g~pi~~y~v~~~~~~~~-----------~~~~~~~~~~~---------------------------------- 251 (389)
T 2jll_A 217 NKPDSHGGVPIHHYQVDVKEVASE-----------IWKIVRSHGVQ---------------------------------- 251 (389)
T ss_dssp ECCSCCTTSCEEEEEEEEEETTCS-----------CCEEEECSTTC----------------------------------
T ss_pred eCCCCCCCcceEEEEEEEEECCCc-----------ccEEeeccCCc----------------------------------
Confidence 988776677889999998865433 45433222222
Q ss_pred eEEeeccccccccccCCcceeecCCCCCCCcchHHHHhhcccccCCceEEEEEeeEeCCCeEEEEEEecCCCccceEEEE
Q psy574 499 EIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPMTSTSVKLTWEILNTDYIEGVYIY 578 (977)
Q Consensus 499 ~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~g~~~~~~~~~l~~~~~~~~~~l~~~~~~~tsv~lsW~~p~~~~i~~Y~v~ 578 (977)
T Consensus 252 -------------------------------------------------------------------------------- 251 (389)
T 2jll_A 252 -------------------------------------------------------------------------------- 251 (389)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeecceeCCCCCceEEeccCCCCCCCCceeEEEEecCcEE
Q psy574 579 SRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSV 658 (977)
Q Consensus 579 y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~g~~s~~~~~~T~~~~P~~~P~~v~~~~~~~~sv 658 (977)
..+.|.+|.+++.|.|+|.|.|..|.|.++..+.+.|.+..|+.+|. +.....+.+++
T Consensus 252 ---------------------~~~~i~~l~~~~~y~~~v~A~N~~G~~~~s~~~~~~t~~~~~p~~p~-~~~~~~~~~~v 309 (389)
T 2jll_A 252 ---------------------TMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPVREPSPPS-IHGQPSSGKSF 309 (389)
T ss_dssp ---------------------SEEEECSCCTTCEEEEEEEEEESSCBCCCCCCEEEECCCCCCCCCCC-EEEEEETTTEE
T ss_pred ---------------------ceEEECCccCCCEEEEEEEEEcCCccCCCCcceEEEecCCCCCCCCc-cccccCcCCEE
Confidence 33455556666666666666666666656665666676665555774 66666788999
Q ss_pred EEEeeCCCCCCCCeeeeEEEEEEEecC-CcceEEEEecCCcCeEEecCCCCCceEEEEEEEEcCCCcCCCCCceEEeecC
Q psy574 659 LLKWKPPPVGTHNGVIRTYQIIVGGGN-NSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTS 737 (977)
Q Consensus 659 ~v~W~~p~~~~~ng~i~~Y~v~~~~~~-~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~~G~g~~S~~~~~~t~~ 737 (977)
.|+|.+| .+.++.|.+|.|+|+..+ ........+.++.++++|.+|+|++.|.|+|+|+|.+|.|++|.. .++|.+
T Consensus 310 ~l~W~~p--~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~t~Y~~~V~A~n~~G~s~~s~~-~~~T~~ 386 (389)
T 2jll_A 310 KLSITKQ--DDGGAPILEYIVKYRSKDKEDQWLEKKVQGNKDHIILEHLQWTMGYEVQITAANRLGYSEPTVY-EFSMPP 386 (389)
T ss_dssp EEEECCC--CCCSSCCCEEEEEEEC-----CCBCCEECTTCCEEEECSCCTTCEEEEEEEEEC-CCBCCCEEE-EEECCC
T ss_pred EEEEECC--CCCCCcccEEEEEEEeCCCCcceeEeeccCCcceEEeCCcCCCCEEEEEEEEEcCCcCCCceee-EecCCC
Confidence 9999988 678899999999999855 333334556778899999999999999999999999999999965 676655
Q ss_pred C
Q psy574 738 G 738 (977)
Q Consensus 738 ~ 738 (977)
.
T Consensus 387 ~ 387 (389)
T 2jll_A 387 K 387 (389)
T ss_dssp C
T ss_pred C
Confidence 4
No 9
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A
Probab=100.00 E-value=1.1e-39 Score=369.97 Aligned_cols=356 Identities=27% Similarity=0.401 Sum_probs=297.6
Q ss_pred cccccceecccceEE---eCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCC-CCCeEEEE
Q psy574 3 LLREEFRVQPKSQRV---AAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRK-TDDGRYQC 78 (977)
Q Consensus 3 ~l~~~~~~~p~~~~v---~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~-~D~G~Y~C 78 (977)
+.+|.|..+|.+..+ .+|++++|.|.+ .|.|.+.|.|+|||..+....+.|+.+. +++|.|.++.. +|+|.|+|
T Consensus 2 ~~~P~~~~~p~~~~~~~~~~g~~v~l~C~~-~g~p~~~v~W~k~g~~~~~~~~~~~~~~-~~~L~i~~~~~~~D~G~Y~C 79 (382)
T 1cs6_A 2 SYGPVFEEQPAHTLFPEGSAEEKVTLTCRA-RANPPATYRWKMNGTELKMGPDSRYRLV-AGDLVISNPVKAKDAGSYQC 79 (382)
T ss_dssp CEEEEEEECCCCEEEETTCSCCEEEECCEE-EEESCCEEEEEETTEECCCSTTSSEEEE-TTEEEEESCCHHHHCEEEEE
T ss_pred CCCCEEEECCCcEEEecCCCCCcEEEEEEe-cCCCCCEEEEEECCEECCcCCCccEEee-CCeEEEecccccccCEEEEE
Confidence 357899999999887 799999999999 7889999999999999976656777775 78999999997 99999999
Q ss_pred EEEecCceeeeEeEEEEEEcCCeEEeC-CCceEEeCCCeEEEEEEe-cccCceEEEEEECCeeCC---CCceEEe-ccce
Q psy574 79 VVKNVAGTRESTDAVLRVLVKPYIIRG-PKDTTVSASSIIVFECSV-GGDAVLTVHWKRLGSAMP---EDRMSVL-PSRS 152 (977)
Q Consensus 79 ~a~n~~g~~~s~~~~l~V~~~P~~~~~-p~~~~v~~G~~v~l~C~v-~g~p~~~i~W~k~~~~l~---~~~~~~~-~~~~ 152 (977)
+|.|..|...+..+.|.|...|.+... +....+.+|+++.|.|.+ .+.|.+.+.|+|++..+. ..+..+. .++.
T Consensus 80 ~a~n~~g~~~s~~~~l~v~~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~ 159 (382)
T 1cs6_A 80 VATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGN 159 (382)
T ss_dssp EEEETTEEEECCCEEEEEEEECCCCSSCCCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEECTTTCC
T ss_pred EEEcCCcEEEecceEEEeeccccccccCCCceEEecCCcEEEEeCCCCCCCCcEEEEEECCCccccccCceEEEecCceE
Confidence 999998877777788888876665543 566789999999999996 567889999999987652 2333333 4478
Q ss_pred EEEccCccCCCeEEEEEEEeCCeeE-----EEEEEEEEe------eCCeEEe-cCCCcEEeeCCeEEEEEEEecCCCCeE
Q psy574 153 LQLSDVRLEDAGEYVCEAENAVGKI-----SASATLTVQ------MAPIVRE-RPSDLRLEVGRDAVFLCGIEGSPPPST 220 (977)
Q Consensus 153 L~I~~v~~~D~G~Y~C~a~n~~g~~-----~~~~~L~V~------~~p~~~~-~p~~~~v~~G~~v~L~C~~~g~p~~~i 220 (977)
|.|.+++.+|+|.|+|.+.|..|.. +..+.|.|. .+|.+.. .+....+.+|+.++|.|.+.+.|.+.+
T Consensus 160 L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~s~~~~l~v~~~~~~~~~P~~~~~~~~~~~~~~G~~v~l~C~~~g~p~~~i 239 (382)
T 1cs6_A 160 LYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQI 239 (382)
T ss_dssp EEESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCCCEEEEEEECCCSEEEEETTCCEEEECEEEEESCCEE
T ss_pred EEEEeeCcccCeeEEEEEEEccccccceeEccceeeccchhhcccCCCceeccCCCceEEeCCCeEEEEEEEccCCCCEE
Confidence 9999999999999999999877422 223455543 2455544 356778999999999999999999999
Q ss_pred EEEEcCeeeeecCCCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEECCCCCCCCeEEeCC
Q psy574 221 FWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGP 300 (977)
Q Consensus 221 ~W~~~g~~~~~~~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~~~~~~pp~i~~~p 300 (977)
.|++++..+.. .+ ......|.|.+++.+|+|.|+ |.|.|..|.....+.|.|.. +|.+...+
T Consensus 240 ~W~~~~~~~~~-------~~-----~~~~~~L~i~~~~~~d~G~Y~-C~a~n~~g~~~~~~~l~V~~-----~p~~~~~~ 301 (382)
T 1cs6_A 240 KWRKLDGSQTS-------KW-----LSSEPLLHIQNVDFEDEGTYE-CEAENIKGRDTYQGRIIIHA-----QPDWLDVI 301 (382)
T ss_dssp EEEECCSCCSC-------CC-----SBSSSEEEECSCCGGGCEEEE-EEEEETTEEEEEEEEEEEEE-----EEEEEECC
T ss_pred EEEECCccccc-------EE-----ecCCcEEEEccCChhhCEEEE-EEEEcCCCeEEEEEEEEEec-----CCCcccCC
Confidence 99998876421 00 012348999999999999999 99999999988889999987 78888888
Q ss_pred CceeecCCCcEEEEEEEcc--CceEEEEECCEEcCCCCcEEEecCceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEE
Q psy574 301 ANQTLPLRSEARLRCQVRG--EGSVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRF 378 (977)
Q Consensus 301 ~~~~v~~g~~~~L~C~~~~--~p~i~W~~~g~~l~~~~~~~~~~~~sl~I~~v~~~d~G~Y~C~a~n~~G~~~~s~~l~v 378 (977)
....+..|+.+.|.|.+.+ .|.+.|+++|..+....++.+ .+++|.|.++...|+|.|+|.|.|..|....++.|.|
T Consensus 302 ~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~-~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V 380 (382)
T 1cs6_A 302 TDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEV-SGGELRFSKLVLEDSGMYQCVAENKHGTVYASAELTV 380 (382)
T ss_dssp CCEEEETTCCEEEECEEEEESCCEEEEEETTEECCCCSSEEE-ETTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred CccEEcCCCeEEEEEEeeeecCCEEEEEECCEECCCCceEEE-ECCEEEECcCCcccCEEEEEEEEeCCCeEEEEEEEEE
Confidence 8889999999999999998 778999999999988877766 4578999999999999999999999999999999988
Q ss_pred E
Q psy574 379 E 379 (977)
Q Consensus 379 ~ 379 (977)
.
T Consensus 381 ~ 381 (382)
T 1cs6_A 381 Q 381 (382)
T ss_dssp E
T ss_pred e
Confidence 5
No 10
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}
Probab=100.00 E-value=1.2e-38 Score=398.70 Aligned_cols=631 Identities=18% Similarity=0.232 Sum_probs=404.2
Q ss_pred cccceecccc-eEEeCCCcEEEEEECCCCCCCCeEEEEe-CCEEeecCCCceEEEecCcEEEEcCCCCCC------CeEE
Q psy574 5 REEFRVQPKS-QRVAAGDTALLECGPPRGHPEPTLVWKK-NGHPIDFENSKRLRLVDGTNLAIQDSRKTD------DGRY 76 (977)
Q Consensus 5 ~~~~~~~p~~-~~v~~G~~v~L~C~~~~g~P~~~v~W~k-~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D------~G~Y 76 (977)
.|.|..+|.+ +.+.+|+.++|.|.+ .|.|.+.|.|+| ||+.+.... ....+..+|+|.|.+++.+| +|.|
T Consensus 38 ~P~~~~~p~~~~~~~~g~~~~l~C~a-~g~p~p~~~W~k~~g~~~~~~~-~~~~~~~~g~l~i~~~~~~~~~~~~d~G~Y 115 (816)
T 3dmk_A 38 GPVFLKEPTNRIDFSNSTGAEIECKA-SGNPMPEIIWIRSDGTAVGDVP-GLRQISSDGKLVFPPFRAEDYRQEVHAQVY 115 (816)
T ss_dssp EEEEEECCCSEEEEETTTCEEEECEE-EEESCCEEEEEETTSCBCCCBT-TTBEECSTTEEEECCCCGGGCCHHHHEEEE
T ss_pred CCcEEeCCCCeEEEECCCCeEEEeee-cCCCCCEEEEEeCCCCCccCCC-ceEEEeeCCcEEEcCCChHHccccccceEE
Confidence 4889999988 568899999999999 889999999999 898885332 23344668999999999887 8999
Q ss_pred EEEEEecCceeeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEecccC---ceEEEEEECCeeC------CCCceEE
Q psy574 77 QCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDA---VLTVHWKRLGSAM------PEDRMSV 147 (977)
Q Consensus 77 ~C~a~n~~g~~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p---~~~i~W~k~~~~l------~~~~~~~ 147 (977)
+|.|.|..|...+..+.|.+...+.+...+....+.+|+++.|.|.+.+.+ .+.+.|+|++..+ ..+|+.+
T Consensus 116 ~C~a~n~~G~~~S~~~~v~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~r~~~ 195 (816)
T 3dmk_A 116 ACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLV 195 (816)
T ss_dssp EEEEEETTEEEEEEEEEEEEECCCCCCCBCCCEEEETTSCEEECCBCCHHHHTTEEEEEEEETTSCEECBSSCBTTTEEE
T ss_pred EEEEecCcceEEccceEEEEEEccccEEEEecceEecCceEEEEECCCccccccEEEEEEEecCceEeccccCCCceEEE
Confidence 999999999877888888888777777778888999999999999985432 2789999997654 2568888
Q ss_pred eccceEEEccCccCCC-eEEEEEEEeCCee-EE---EEEEEEEee-----CCeEEecC--CCcEEeeCCeEEEEEEEecC
Q psy574 148 LPSRSLQLSDVRLEDA-GEYVCEAENAVGK-IS---ASATLTVQM-----APIVRERP--SDLRLEVGRDAVFLCGIEGS 215 (977)
Q Consensus 148 ~~~~~L~I~~v~~~D~-G~Y~C~a~n~~g~-~~---~~~~L~V~~-----~p~~~~~p--~~~~v~~G~~v~L~C~~~g~ 215 (977)
..+++|.|.+++.+|+ |.|+|.+.|..+. .. ....|.|.. +|.+...+ ....+..|+.++|.|.+.|.
T Consensus 196 ~~~g~L~I~~v~~~D~~g~Y~C~~~~~~~~~~~~s~~~~~l~v~~~~~~~~P~i~~~~~~~~~~v~~g~~v~L~C~~~g~ 275 (816)
T 3dmk_A 196 LPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGY 275 (816)
T ss_dssp CTTSCEEESSCCGGGSSCEEEEEEEETTTCCEEECSBCEEEEEECCCSCCCCBCCGGGGEEEEEECTTSCEEECCCCBCS
T ss_pred ecCceEEEecCChhhccceeEEEEeeeeeeeeeecccccceEEeCCCCCCCCccccccCccceEEeCCCeEEEEEEeeec
Confidence 8889999999999999 9999999976532 11 223555553 34443222 34578899999999999999
Q ss_pred CCCeEEEEEcCeeeeec-CCCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEECCCCCCCC
Q psy574 216 PPPSTFWMLEGNRSLIY-PGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPP 294 (977)
Q Consensus 216 p~~~i~W~~~g~~~~~~-~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~~~~~~pp 294 (977)
|.+.+.|+|++...... ......++... .+ .|.|.+++.+|+|.|+ |.|.|..|.....+.|.|.. ++
T Consensus 276 p~p~v~W~k~~~~~~~~~~~~~~~~~~~~---~~--~L~i~~v~~~D~G~Y~-C~a~n~~g~~~~~~~l~V~~-----~~ 344 (816)
T 3dmk_A 276 PVPVFRWYKFIEGTTRKQAVVLNDRVKQV---SG--TLIIKDAVVEDSGKYL-CVVNNSVGGESVETVLTVTA-----PL 344 (816)
T ss_dssp SCCEEEEEEECTTSSCEEECCCSSSEEEE---TT--EEEECSCCGGGCEEEE-EEEECSSCEEEEEEEEEECE-----EE
T ss_pred CCCeEEEEeCCCCCccCcceecCCceEec---cc--eEEECCCCHhHCEEEE-EEEEcCCCceEEEEEEEEcC-----CC
Confidence 99999999965422110 00112233222 24 9999999999999999 99999999888888888876 56
Q ss_pred eEEeCCCceeecCCCcEEEEEEEcc--CceEEEEECCEEcCCCCcEEEecCceEEEeccCCCCCeEEEEEEEcCCCceEE
Q psy574 295 VILFGPANQTLPLRSEARLRCQVRG--EGSVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASW 372 (977)
Q Consensus 295 ~i~~~p~~~~v~~g~~~~L~C~~~~--~p~i~W~~~g~~l~~~~~~~~~~~~sl~I~~v~~~d~G~Y~C~a~n~~G~~~~ 372 (977)
.+...|....+..|+.+.|.|.+.+ .+.+.|+++|..+... ++.|.|.++...|+|.|+|.|.|..|....
T Consensus 345 ~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~~~~~-------~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~ 417 (816)
T 3dmk_A 345 SAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHS-------ESVLRIESVKKEDKGMYQCFVRNDRESAEA 417 (816)
T ss_dssp EEEEESSEEECCTTSCEEEEEEEEEECCCEEEEEETTEECSCC-------SSEEEESSCCGGGCEEEEEEEECSSCEEEE
T ss_pred ceeeCCCceEecCCCCEEEEEEEeccCCCEEEEEECCEECCCC-------CCEEEEcCCCHHHCEEEEEEEECCCCcEEE
Confidence 6677778888999999999999998 6789999999988543 467999999999999999999999998888
Q ss_pred EEEEEEECCCCCCCcccCCCCCCCCCCCCCCCeEEeeCCCceEEEEEcCCCCCCcccceEEEEEeecCCCCCCCCCCCCc
Q psy574 373 SASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTAT 452 (977)
Q Consensus 373 s~~l~v~~~~~~~~~~~~~~~~~~~p~~P~~~~v~~~~~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~ 452 (977)
+..+.+.....+..............+....+.|...+.....+.|....... .....|.+......
T Consensus 418 ~~~l~v~~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~g~~l-~~~~~~~~~~~~~~------------ 484 (816)
T 3dmk_A 418 SAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKI-ANNDRYQVGQYVTV------------ 484 (816)
T ss_dssp CCEEECCCSSCCCEEEEECCCEEECSSSCEEEEEEEECSSCCEEEEEETTEEC-CSCTTEEEEEEECT------------
T ss_pred EEEEEEccccCCCceEecCcceEEcCCCCEEEEEEEecCCCCEEEEEECCEEC-CCCCCcccccEEec------------
Confidence 88777753222211111111112233434444554444455677777644310 01112222111100
Q ss_pred ccEEEeceecCcCeEEEEccCCCCeEEEEEEEEcCCCCCCCCCCCceEEeeccccccccccCCcceeecCCCCCCCcchH
Q psy574 453 ATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESL 532 (977)
Q Consensus 453 ~~w~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~G~s~~S~~s~~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~g~~~ 532 (977)
.......+.|.++.......|+|.|.|..|.... +..+.+. ..| . ..++
T Consensus 485 -------~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~---~~~l~V~-~~p----~-------~~~~--------- 533 (816)
T 3dmk_A 485 -------NGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEH---SAKLNVY-GLP----Y-------IRQM--------- 533 (816)
T ss_dssp -------TSCEEEEEEESSCCTTTCEEEEEEEEETTEEEEE---EEEEEEC-SSC----E-------ECCC---------
T ss_pred -------CCCcEEEEEEeeccccCCEEEEEEEEECCCeEEE---EEEEEEe-cCC----e-------eEcc---------
Confidence 0111234778888888889999999998875422 1222221 111 0 0000
Q ss_pred HHHhhcccccCCceEEEEEeeEeCCCeEEEEEEecCCCccceEEEEEEecCCC--CCceEEEEeecCccceEEECCCC-C
Q psy574 533 RRARQHLQEGGGSLIELTEVKPMTSTSVKLTWEILNTDYIEGVYIYSRGLDPP--ASVAMLTVLHAGEASGFLVTGLA-H 609 (977)
Q Consensus 533 ~~~~~~l~~~~~~~~~~l~~~~~~~tsv~lsW~~p~~~~i~~Y~v~y~~~~~~--~~~~~~~~~~~~~~~~~~i~~L~-p 609 (977)
-.........+.|.+...... .-.|.|...+.. ..... .. .....+.|.++. .
T Consensus 534 -----------------~~~~v~~G~~v~l~C~~~g~p---~~~i~W~k~~~~l~~~~~~-~~---~~~~~l~i~~v~~~ 589 (816)
T 3dmk_A 534 -----------------EKKAIVAGETLIVTCPVAGYP---IDSIVWERDNRALPINRKQ-KV---FPNGTLIIENVERN 589 (816)
T ss_dssp -----------------CCEEEETTCCEEEECCEECSS---EEEEEEEETTEESCCSTTE-EE---CTTSEEEESSCCHH
T ss_pred -----------------CCeEEecCCeEEEEEEecCCC---CCEEEEEECCeEcccCCce-EE---ecCCeEEEEecCcc
Confidence 001111223333333322100 012333322210 00000 00 123467888876 4
Q ss_pred CcEEEEEEEEeecceeCCCCCceEE--eccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecC--
Q psy574 610 YSRYEFFLVPFFGSVDGKPSNLRAV--RTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGN-- 685 (977)
Q Consensus 610 ~t~Y~~~V~a~n~~g~g~~s~~~~~--~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~-- 685 (977)
.....++..|.|..|... +..+.+ ...+......+.... ......+.|.+.... ... ...|.|...+
T Consensus 590 ~d~G~Y~C~a~n~~g~~~-~~~~~v~v~~~p~~~~~~~~~~~--~~~G~~v~L~C~~~~--~~~----~~~i~W~~~g~~ 660 (816)
T 3dmk_A 590 SDQATYTCVAKNQEGYSA-RGSLEVQVMVLPRIIPFAFEEGP--AQVGQYLTLHCSVPG--GDL----PLNIDWTLDGQA 660 (816)
T ss_dssp HHCEEEEEEEEESSSCEE-EEEEEEEEECCCCCBCCCCCSSC--EESSCEEEEEEBCCC--SSS----CCEEEEEETTBC
T ss_pred ccCEEEEEEEEECCCcee-eeeEEEEEecCCccccccccccc--cCCCCeEEEEEEEeC--CCC----CCEEEEEECCeE
Confidence 444555566677766431 122222 222111111112222 224567888887541 111 1134444432
Q ss_pred ---CcceEEEEecCCcCeEEecCCCCCceEEEEEEEEcCCCcCCCCCceE
Q psy574 686 ---NSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPAL 732 (977)
Q Consensus 686 ---~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~~G~g~~S~~~~ 732 (977)
...............+.|.++.......++..|.|.+|....+..+.
T Consensus 661 l~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~ 710 (816)
T 3dmk_A 661 ISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLN 710 (816)
T ss_dssp CCGGGTCEEEEETTTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEEC
T ss_pred cCCCCCeeEEEcCCCeeEEEEccCChhhCEEEEEEEEeCCccEEEEEEEE
Confidence 11112222333456788999999888899999999988765443333
No 11
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4
Probab=100.00 E-value=9.2e-40 Score=372.31 Aligned_cols=360 Identities=20% Similarity=0.312 Sum_probs=287.4
Q ss_pred cccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecC
Q psy574 5 REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVA 84 (977)
Q Consensus 5 ~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~ 84 (977)
.|.|...|.++.+.+|+.++|.|.+..+.|.+.|.|+|||+.+............+++|.|.+++.+|+|.|+|.|.|..
T Consensus 6 ~P~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~ 85 (395)
T 1bih_A 6 YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQCFAETPA 85 (395)
T ss_dssp CCEECCCCSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTTTEEECTTSCCEEESSCCGGGCEEEEEEEEETT
T ss_pred CCEeecCCCceEEeCCCEEEEEEEEecCCCCceEEEEECCcCcccccceEEEecCCceEEEecCCCCCCcEEEEEEEeCC
Confidence 57888999999999999999999993338999999999999996544333334457889999999999999999999988
Q ss_pred ceeeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEe-cccCceEEEEEECC---eeCC-----CCceEEeccceEEE
Q psy574 85 GTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSV-GGDAVLTVHWKRLG---SAMP-----EDRMSVLPSRSLQL 155 (977)
Q Consensus 85 g~~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v-~g~p~~~i~W~k~~---~~l~-----~~~~~~~~~~~L~I 155 (977)
|...+..+.|.|...+.....+.+..+.+|+++.|.|.+ .+.|.+.+.|+|++ .... ..++....++.|.|
T Consensus 86 g~~~s~~~~l~v~~~~~p~~~~~~~~~~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i 165 (395)
T 1bih_A 86 GVASSRVISFRKTYLIASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYF 165 (395)
T ss_dssp EEEECCCEEEEEEEEECCCCEEEEECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEECTTSCEEE
T ss_pred CeEEeEEEEEEEEEeecCCcCCcceeeeeCCcEEEEecCCCCCCCCeEEEEecCCCcCcccccccccccEEEcCCCcEEE
Confidence 876666667766533222223456678899999999996 88999999999986 2211 34666667889999
Q ss_pred ccCccCCCe---EEEEEEEeCCeeEEEEEE---EEEee----------CCeEEecCCCcEEeeCCeEEEEEEEecCCCCe
Q psy574 156 SDVRLEDAG---EYVCEAENAVGKISASAT---LTVQM----------APIVRERPSDLRLEVGRDAVFLCGIEGSPPPS 219 (977)
Q Consensus 156 ~~v~~~D~G---~Y~C~a~n~~g~~~~~~~---L~V~~----------~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~ 219 (977)
.+++.+|+| .|+|.|.|..+....... +.+.. +|.+ .+....+.+|+.++|.|.+.|.|.+.
T Consensus 166 ~~v~~~d~G~~~~Y~C~a~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~~G~~v~l~C~~~g~p~~~ 243 (395)
T 1bih_A 166 TIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQY--VSKDMMAKAGDVTMIYCMYGSNPMGY 243 (395)
T ss_dssp EEECGGGCCSSEEEEEEEECTTCSSCEEEEEEEECCCBCCSSCCCCCCEEEE--ECCSEEEETTSCEEEEEEEECSSCCC
T ss_pred EEEeeccCCCceEEEEEEEecccceEEEeeeEEecccccccccccCCcCcee--cCCceEEECCCcEEEEEEeccCCCCe
Confidence 999999999 999999998876332222 22211 2222 46777899999999999999999999
Q ss_pred EEEEEcCeeeeecCCCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeE-EEEEEEECCCCCCCCeEEe
Q psy574 220 TFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLA-RASLTVSGPDPNPPPVILF 298 (977)
Q Consensus 220 i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~-~~~l~V~~~~~~~pp~i~~ 298 (977)
+.|+++|..+... ...++..... .+.+.|.|.++..+|+|.|+ |.|.|..|.... .+.|.|.. +|.+..
T Consensus 244 i~W~~~g~~~~~~---~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~-C~a~n~~g~~~~~~~~l~V~~-----~P~~~~ 313 (395)
T 1bih_A 244 PNYFKNGKDVNGN---PEDRITRHNR-TSGKRLLFKTTLPEDEGVYT-CEVDNGVGKPQKHSLKLTVVS-----APKYEQ 313 (395)
T ss_dssp CEEEETTEECCCC---TTSSEESCSS-STTSEEEESSCCGGGCEEEE-EEECCSSSSCEEEEEEEEEEE-----EEEEEE
T ss_pred EEEEECCEEcCCC---CceeEEEEec-CCCceEEEccCChhhCEEEE-EEEEeCCCCceEEEEEEEEEc-----CCcccc
Confidence 9999999876432 1223322211 12248999999999999999 999999998765 88999987 788888
Q ss_pred CCCc-eeecCCCcEEEEEEEcc--CceEEEEECCEEcCCCCcEEEecCceEEEeccCCCCCeEEEEEEEcCCCceEEEEE
Q psy574 299 GPAN-QTLPLRSEARLRCQVRG--EGSVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSAS 375 (977)
Q Consensus 299 ~p~~-~~v~~g~~~~L~C~~~~--~p~i~W~~~g~~l~~~~~~~~~~~~sl~I~~v~~~d~G~Y~C~a~n~~G~~~~s~~ 375 (977)
.+.. ..+..|+.+.|.|.+.+ .|.+.|+++|..+... ++.+. ++.|.|.++...|+|.|+|.|.|..|....++.
T Consensus 314 ~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~-~~~~~-~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~ 391 (395)
T 1bih_A 314 KPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGG-RATVT-DSGLVIKGVKNGDKGYYGCRATNEHGDKYFETL 391 (395)
T ss_dssp CCCSEEEECTTSCEEEECEEEEESCCCCEEEETTEECCSS-SEEEE-TTEEEESSCCSTTCEEEEEEEEETTEEEEEEEE
T ss_pred CCCcceEecCCCeEEEEEEECcccCCeeEEEECCEECCCC-ceEEE-CCEEEEeeCCcccCEEEEEEEEccCCCceEEEE
Confidence 8877 78999999999999998 7789999999998654 66554 459999999999999999999999999988888
Q ss_pred EEE
Q psy574 376 LRF 378 (977)
Q Consensus 376 l~v 378 (977)
|.|
T Consensus 392 l~V 394 (395)
T 1bih_A 392 VQV 394 (395)
T ss_dssp EEE
T ss_pred EEE
Confidence 876
No 12
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Probab=100.00 E-value=1.2e-39 Score=370.40 Aligned_cols=354 Identities=25% Similarity=0.407 Sum_probs=288.6
Q ss_pred cccceecccc-eEEeCCCcEEEEEECCCCCCCCeEEEEe-CCEEeecCCCceEEEecCcEEEEcCCCCCC------CeEE
Q psy574 5 REEFRVQPKS-QRVAAGDTALLECGPPRGHPEPTLVWKK-NGHPIDFENSKRLRLVDGTNLAIQDSRKTD------DGRY 76 (977)
Q Consensus 5 ~~~~~~~p~~-~~v~~G~~v~L~C~~~~g~P~~~v~W~k-~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D------~G~Y 76 (977)
.|.|..+|.+ +.+.+|+.++|.|.+ .|.|.+.|.|+| ||..+......+ .+..+|+|.|.+++.+| +|.|
T Consensus 3 ~P~f~~~p~~~~~~~~G~~v~l~C~~-~g~p~p~v~W~k~~g~~~~~~~~~~-~~~~~~~L~i~~~~~~d~~~~~d~G~Y 80 (388)
T 2v5m_A 3 GPVFLKEPTNRIDFSNSTGAEIECKA-SGNPMPEIIWIRSDGTAVGDVPGLR-QISSDGKLVFPPFRAEDYRQEVHAQVY 80 (388)
T ss_dssp EEEEEECCCSEEEEETTTCEEEECEE-EEESCCEEEEEETTSCBCCCBTTTB-EECSTTEEEECCCCGGGCCHHHHEEEE
T ss_pred CCchhhCCCceEEEEcCccEEEEEEC-CCCCCCEEEEEcCCCCccccCCCce-EEcCCceEEecccChhhccccccCceE
Confidence 4788898887 568899999999999 889999999999 888885433323 34568899999999997 9999
Q ss_pred EEEEEecCceeeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEecccC---ceEEEEEECCeeCC------CCceEE
Q psy574 77 QCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDA---VLTVHWKRLGSAMP------EDRMSV 147 (977)
Q Consensus 77 ~C~a~n~~g~~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p---~~~i~W~k~~~~l~------~~~~~~ 147 (977)
+|.|.|..|...+..+.|.|..+|.+...+....+.+|+++.|.|.+.+.+ .+.+.|++++..+. ..++.+
T Consensus 81 ~C~a~n~~g~~~s~~~~v~v~~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~ 160 (388)
T 2v5m_A 81 ACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLV 160 (388)
T ss_dssp EEEEEETTEEEECCCEEEEEECCCCCCCBCCCEEEETTSCEEECCBCCTTTTTTEEEEEEEETTCCEECSSSCBTTTEEE
T ss_pred EEEEEccCCeEEecceEEEEccccccccCccceeeecCCcEEEEEECcCCCCCCcceEEEEeCCCcccccccCCCCcEEE
Confidence 999999998776778889999889888888888999999999999997654 38999999987652 346666
Q ss_pred eccceEEEccCccCCC-eEEEEEEEeCCee-EEEE---EEEEEeeC-----CeEE-ecCCCcEEeeCCeEEEEEEEecCC
Q psy574 148 LPSRSLQLSDVRLEDA-GEYVCEAENAVGK-ISAS---ATLTVQMA-----PIVR-ERPSDLRLEVGRDAVFLCGIEGSP 216 (977)
Q Consensus 148 ~~~~~L~I~~v~~~D~-G~Y~C~a~n~~g~-~~~~---~~L~V~~~-----p~~~-~~p~~~~v~~G~~v~L~C~~~g~p 216 (977)
..++.|.|.+++.+|+ |.|+|.+.|..+. .... ..|.|..+ |.+. .......+.+|+.++|.|.+.|.|
T Consensus 161 ~~~~~L~i~~v~~~d~~G~Y~C~~~n~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~g~p 240 (388)
T 2v5m_A 161 LPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFP 240 (388)
T ss_dssp CTTSCEEESSCCGGGGGCCEEEEEEETTTCCEEECSSCBCEEEECCCSCEEEECCSSCCCCEEEETTSCEEECCCCEEES
T ss_pred ccCCcEEEecCCccccCeeEEEEeccCCCCceeeccccceEEEecCCcCCCCcCccccCCceEEeeCCcEEEEEECCCCC
Confidence 7788999999999999 9999999997643 2221 35666644 2211 123345788999999999999999
Q ss_pred CCeEEEEEcCeeeeec-CCCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEECCCCCCCCe
Q psy574 217 PPSTFWMLEGNRSLIY-PGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPV 295 (977)
Q Consensus 217 ~~~i~W~~~g~~~~~~-~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~~~~~~pp~ 295 (977)
.+.+.|++++..+... ......++... .+ .|.|.+++.+|+|.|+ |.|.|..|.....+.|.|.. +|.
T Consensus 241 ~p~v~W~~~~~~~~~~~~~~~~~~~~~~---~~--~L~i~~v~~~d~G~Y~-C~a~n~~g~~~~~~~l~V~~-----~p~ 309 (388)
T 2v5m_A 241 APSFRWYKFIEGTTRKQAVVLNDRVKQV---SG--TLIIKDAVVEDSGKYL-CVVNNSVGGESVETVLTVTA-----PLS 309 (388)
T ss_dssp CCEEEEEEECTTSSCEEECCCSSSEEEE---TT--EEEESSCCGGGCEEEE-EEEECSSCEEEEEEEEEEEE-----EEE
T ss_pred CCEEEEEecCCCCcccccccccCceecc---cC--EEEECcCCHHHCeEEE-EEEecCCCceeEEEEEEEeC-----CCc
Confidence 9999999986432110 00112233322 23 8999999999999999 99999999998889999987 677
Q ss_pred EEeCCCceeecCCCcEEEEEEEcc--CceEEEEECCEEcCCCCcEEEecCceEEEeccCCCCCeEEEEEEEcCCCceEEE
Q psy574 296 ILFGPANQTLPLRSEARLRCQVRG--EGSVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWS 373 (977)
Q Consensus 296 i~~~p~~~~v~~g~~~~L~C~~~~--~p~i~W~~~g~~l~~~~~~~~~~~~sl~I~~v~~~d~G~Y~C~a~n~~G~~~~s 373 (977)
+...|....+..|+.+.|.|.+.+ .|.+.|+++|..+... ++.|.|.++...|+|.|+|.|.|..|....+
T Consensus 310 ~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~i~~~-------~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~ 382 (388)
T 2v5m_A 310 AKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHS-------ESVLRIESVKKEDKGMYQCFVRNDRESAEAS 382 (388)
T ss_dssp EEEESSEEEECTTSCEEEEEEEEEECCCEEEEEETTEECSCC-------SSEEEESSCCGGGCEEEEEEEECSSCEEEEE
T ss_pred cccCCCcEEecCCCCEEEEEEeccccCCeEEEEECCEECccC-------CCEEEEecCChhhCEEEEEEEEcCCCcEEEE
Confidence 777788889999999999999998 6789999999988542 4689999999999999999999999999998
Q ss_pred EEEEE
Q psy574 374 ASLRF 378 (977)
Q Consensus 374 ~~l~v 378 (977)
+.|.|
T Consensus 383 ~~l~V 387 (388)
T 2v5m_A 383 AELKL 387 (388)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 88876
No 13
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Probab=100.00 E-value=1.1e-36 Score=370.17 Aligned_cols=333 Identities=19% Similarity=0.331 Sum_probs=266.7
Q ss_pred ceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEec-CcEEEEcCCCCCCCeEEEEEEEecCceeeeEeE
Q psy574 14 SQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD-GTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDA 92 (977)
Q Consensus 14 ~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~-~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~~ 92 (977)
...+.+|+.++|.|.+ .+ |.+.|.|+|||+.+.. ..|+.+.. ++.|.|.+++.+|+|.|+|.|.|..|...+..+
T Consensus 120 ~~~v~~g~~v~l~C~~-~~-p~~~v~W~~~g~~l~~--~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~ 195 (642)
T 1e07_A 120 SKPVEDKDAVAFTCEP-ET-QDATYLWWVNNQSLPV--SPRLQLSNGNRTLTLFNVTRNDTASYKCETQNPVSARRSDSV 195 (642)
T ss_pred ceeEecCCcEEEEEEC-CC-CCeeEEEEECCeECCC--CCceEEcCCCCEEEEeCCCcccCeeEEEEEecCCCCcccceE
Confidence 4668899999999999 55 8999999999999853 34565543 568999999999999999999998887667778
Q ss_pred EEEEEcCC-eEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceEEeccceEEEccCccCCCeEEEEEEE
Q psy574 93 VLRVLVKP-YIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAE 171 (977)
Q Consensus 93 ~l~V~~~P-~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~ 171 (977)
.|.|..+| .+...|.+..+.+|+.+.|.|.+.|.|.+.+.|+|++..+. .+..|.|.+++.+|+|.|+|.|.
T Consensus 196 ~l~V~~~p~~~~~~~~~~~~~~G~~~~l~C~~~g~p~~~i~W~~~g~~i~-------~~~~L~i~~~~~~d~G~Y~C~a~ 268 (642)
T 1e07_A 196 ILNVLYGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQ-------STQELFIPNITVNNSGSYTCQAH 268 (642)
T ss_pred EEEEEeCCCCcEEecCCcccccCCEEEEEEEcCCCCCcEEEEEECCeEcc-------cCCceEEecccccCCeEEEEEEE
Confidence 99998655 34556777789999999999999999999999999998874 34679999999999999999999
Q ss_pred eCCeeEE--EEEEEEEeeCC--eEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCccccEEEEEccC
Q psy574 172 NAVGKIS--ASATLTVQMAP--IVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSD 247 (977)
Q Consensus 172 n~~g~~~--~~~~L~V~~~p--~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~ 247 (977)
|..|... ..+.|.|..++ .+...+....+..|+.+.|.|.+.+.| +.+.|+++|..+. ...++.+...
T Consensus 269 n~~g~~~~s~~~~v~v~~~~~~p~i~~~~~~~~~~g~~v~l~C~~~~~p-~~v~W~~~g~~l~-----~~~~~~~~~~-- 340 (642)
T 1e07_A 269 NSDTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDEDAVALTCEPEIQN-TTYLWWVNNQSLP-----VSPRLQLSND-- 340 (642)
T ss_pred eCCCceEEeeeEEEEEEccCCCCEEEcCCceeEecCCcEEEEEECCCCC-ccEEEEECCccCC-----CcCCEEEeCC--
Confidence 9887643 45667776432 222233344566688899999999886 6999999998763 2345555432
Q ss_pred CceEEEEeecccCCCCeEEEEEEEcCCCce-eEEEEEEEECCCCCCCCeEEeCCCceeecCCCcEEEEEEEcc--CceEE
Q psy574 248 GMNLLKIQNVSRTAAPLIILCLGVNAAGSD-LARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG--EGSVQ 324 (977)
Q Consensus 248 g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~-~~~~~l~V~~~~~~~pp~i~~~p~~~~v~~g~~~~L~C~~~~--~p~i~ 324 (977)
...|.|.++..+|+|.|+ |.|.|..|.. +..+.|.|... |+.....+....+..|+.+.|.|.+.+ .+.+.
T Consensus 341 -~~~L~i~~~~~~d~G~Y~-C~a~n~~g~~~s~~~~l~V~~~----p~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~i~ 414 (642)
T 1e07_A 341 -NRTLTLLSVTRNDVGPYE-CGIQNELSVDHSDPVILNVLYG----PDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYS 414 (642)
T ss_pred -CCEEEEeccCcccCeeEE-EEEeCCCCCcceeeEEEEEEcC----CCCCeecCCceEecCCCcEEEEEEcCccCCCeEE
Confidence 238999999999999999 9999999875 45578888863 333344566778899999999999998 67999
Q ss_pred EEECCEEcCCCCcEEEecCceEEEeccCCCCCeEEEEEEEcCCCceEEEE--EEEEE
Q psy574 325 WWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSA--SLRFE 379 (977)
Q Consensus 325 W~~~g~~l~~~~~~~~~~~~sl~I~~v~~~d~G~Y~C~a~n~~G~~~~s~--~l~v~ 379 (977)
|+++|..+.. ...|.|.++...|.|.|+|.|.|..|....+. .+.+.
T Consensus 415 W~~~g~~~~~--------~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~v~v~ 463 (642)
T 1e07_A 415 WLIDGNIQQH--------TQELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVS 463 (642)
T ss_pred EEECCEEcCC--------CceEEEccCChhhCeEEEEEEEcCCCCCcccceEEEEEe
Confidence 9999987743 35699999999999999999999998776554 44444
No 14
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}
Probab=100.00 E-value=2.4e-38 Score=395.84 Aligned_cols=359 Identities=25% Similarity=0.419 Sum_probs=293.2
Q ss_pred ccccceecccceEEeCCCcEEEEEECCCCCCC--CeEEEEeCCEEeec---CCCceEEEecCcEEEEcCCCCCCC-eEEE
Q psy574 4 LREEFRVQPKSQRVAAGDTALLECGPPRGHPE--PTLVWKKNGHPIDF---ENSKRLRLVDGTNLAIQDSRKTDD-GRYQ 77 (977)
Q Consensus 4 l~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~--~~v~W~k~g~~l~~---~~~~r~~~~~~g~L~I~~v~~~D~-G~Y~ 77 (977)
..+.|...+.++.+.+|++++|.|.++.+.|. +.+.|+|++..+.. ..++|+.+..+|+|.|.+++.+|+ |.|+
T Consensus 137 ~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~r~~~~~~g~L~I~~v~~~D~~g~Y~ 216 (816)
T 3dmk_A 137 VAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQ 216 (816)
T ss_dssp CCCCCCCBCCCEEEETTSCEEECCBCCHHHHTTEEEEEEEETTSCEECBSSCBTTTEEECTTSCEEESSCCGGGSSCEEE
T ss_pred EccccEEEEecceEecCceEEEEECCCccccccEEEEEEEecCceEeccccCCCceEEEecCceEEEecCChhhccceeE
Confidence 45667778888999999999999988544444 68999998876542 246789998899999999999998 9999
Q ss_pred EEEEecCceee---eEeEEEEEEc-----CCeEEeCC--CceEEeCCCeEEEEEEecccCceEEEEEECCeeCC------
Q psy574 78 CVVKNVAGTRE---STDAVLRVLV-----KPYIIRGP--KDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMP------ 141 (977)
Q Consensus 78 C~a~n~~g~~~---s~~~~l~V~~-----~P~~~~~p--~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~------ 141 (977)
|.+.+...... .....|.|.. +|.+...+ ....+.+|+++.|.|.+.|.|.+.+.|+|++....
T Consensus 217 C~~~~~~~~~~~~s~~~~~l~v~~~~~~~~P~i~~~~~~~~~~v~~g~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~ 296 (816)
T 3dmk_A 217 CRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVV 296 (816)
T ss_dssp EEEEETTTCCEEECSBCEEEEEECCCSCCCCBCCGGGGEEEEEECTTSCEEECCCCBCSSCCEEEEEEECTTSSCEEECC
T ss_pred EEEeeeeeeeeeecccccceEEeCCCCCCCCccccccCccceEEeCCCeEEEEEEeeecCCCeEEEEeCCCCCccCccee
Confidence 99997653211 2224566654 34443322 35688999999999999999999999999643321
Q ss_pred -CCceEEeccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEEecCCCCeE
Q psy574 142 -EDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPST 220 (977)
Q Consensus 142 -~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i 220 (977)
..+.. ..+++|.|.+++.+|+|.|+|.|.|..|..+..+.|.|..++.+...+....+.+|+.++|.|.+.+.|.+.+
T Consensus 297 ~~~~~~-~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v 375 (816)
T 3dmk_A 297 LNDRVK-QVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTV 375 (816)
T ss_dssp CSSSEE-EETTEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECEEEEEEEESSEEECCTTSCEEEEEEEEEECCCEE
T ss_pred cCCceE-eccceEEECCCCHhHCEEEEEEEEcCCCceEEEEEEEEcCCCceeeCCCceEecCCCCEEEEEEEeccCCCEE
Confidence 12322 2467999999999999999999999999988899999999988888888899999999999999999999999
Q ss_pred EEEEcCeeeeecCCCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEECCCCCCCCeEEeCC
Q psy574 221 FWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGP 300 (977)
Q Consensus 221 ~W~~~g~~~~~~~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~~~~~~pp~i~~~p 300 (977)
.|+++|..+.. ....|.|.+++.+|+|.|+ |.|.|..|....++.|.|.. ...+|.+...+
T Consensus 376 ~W~k~g~~~~~----------------~~~~L~i~~v~~~d~G~Y~-C~a~n~~g~~~~~~~l~v~~--~~~~p~i~~~~ 436 (816)
T 3dmk_A 376 SWMKDGKAIGH----------------SESVLRIESVKKEDKGMYQ-CFVRNDRESAEASAELKLGG--RFDPPVIRQAF 436 (816)
T ss_dssp EEEETTEECSC----------------CSSEEEESSCCGGGCEEEE-EEEECSSCEEEECCEEECCC--SSCCCEEEEEC
T ss_pred EEEECCEECCC----------------CCCEEEEcCCCHHHCEEEE-EEEECCCCcEEEEEEEEEcc--ccCCCceEecC
Confidence 99999987631 1228999999999999999 99999999877777777754 23478888888
Q ss_pred CceeecCCCcEEEEEEEcc--CceEEEEECCEEcCCCCcEEEe----cCc----eEEEeccCCCCCeEEEEEEEcCCCce
Q psy574 301 ANQTLPLRSEARLRCQVRG--EGSVQWWRGEREVGSGPRVNVT----GDG----SLVLTDVTKEDSGEYTCVVKSPHGSA 370 (977)
Q Consensus 301 ~~~~v~~g~~~~L~C~~~~--~p~i~W~~~g~~l~~~~~~~~~----~~~----sl~I~~v~~~d~G~Y~C~a~n~~G~~ 370 (977)
....+..|+.+.|.|.+.+ .+.+.|+++|..+....++... .++ .|.|.++...|.|.|+|.|.|..|..
T Consensus 437 ~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~ 516 (816)
T 3dmk_A 437 QEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVA 516 (816)
T ss_dssp CCEEECSSSCEEEEEEEECSSCCEEEEEETTEECCSCTTEEEEEEECTTSCEEEEEEESSCCTTTCEEEEEEEEETTEEE
T ss_pred cceEEcCCCCEEEEEEEecCCCCEEEEEECCEECCCCCCcccccEEecCCCcEEEEEEeeccccCCEEEEEEEEECCCeE
Confidence 8889999999999999998 6789999999999877666542 222 59999999999999999999999999
Q ss_pred EEEEEEEEECCC
Q psy574 371 SWSASLRFESPT 382 (977)
Q Consensus 371 ~~s~~l~v~~~~ 382 (977)
..++.|.|..++
T Consensus 517 ~~~~~l~V~~~p 528 (816)
T 3dmk_A 517 EHSAKLNVYGLP 528 (816)
T ss_dssp EEEEEEEECSSC
T ss_pred EEEEEEEEecCC
Confidence 999999997653
No 15
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*
Probab=100.00 E-value=7.5e-39 Score=365.89 Aligned_cols=359 Identities=24% Similarity=0.379 Sum_probs=291.9
Q ss_pred cccceec-ccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEe-cCcEEEEc----CCCCCCCeEEEE
Q psy574 5 REEFRVQ-PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV-DGTNLAIQ----DSRKTDDGRYQC 78 (977)
Q Consensus 5 ~~~~~~~-p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~-~~g~L~I~----~v~~~D~G~Y~C 78 (977)
+|.|... +.++.+.+|+.++|.|.+ .|.|.+.|.|+|||..+....+.++.+. .++.|.|. +++.+|+|.|+|
T Consensus 16 ~P~i~~~~~~~~~v~~G~~v~l~C~~-~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~~D~G~Y~C 94 (404)
T 3p3y_A 16 PPTITKQSAKDHIVDPRDNILIECEA-KGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGGRPEEYEGEYQC 94 (404)
T ss_dssp CCCEEEECCTTCEECSSSCCCCCEEE-CCSSCCEEEEEETTEECCGGGCSSCBCCSSSCCCBCCCTTTCCTTSSCEEEEE
T ss_pred CCcccccCCccEEEcCCCCEEEEEEe-cCCCCCeEEEEECCEEeeeecCCcceEecCCceEEEEeccCCCCccCCEEEEE
Confidence 4666653 667899999999999999 8899999999999999865555565554 45677775 889999999999
Q ss_pred EEEecCceeeeEeEEEEEEcCCeEEeC-CCceEEeCCCeEEEEEEe-cccCceEEEEEECCeeCC--CCceEEeccceEE
Q psy574 79 VVKNVAGTRESTDAVLRVLVKPYIIRG-PKDTTVSASSIIVFECSV-GGDAVLTVHWKRLGSAMP--EDRMSVLPSRSLQ 154 (977)
Q Consensus 79 ~a~n~~g~~~s~~~~l~V~~~P~~~~~-p~~~~v~~G~~v~l~C~v-~g~p~~~i~W~k~~~~l~--~~~~~~~~~~~L~ 154 (977)
.|.|..|...+..+.|.|..+|.+... +....+.+|+++.|.|.+ .+.|.+.+.|++++.... ..++....++.|.
T Consensus 95 ~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~l~ 174 (404)
T 3p3y_A 95 FARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGDLY 174 (404)
T ss_dssp EEECSSCEEEEEEEEEEECCCCCCCCCCCCCEEEETTSCEEECCCCCCCSSCCEEEEECTTSCBCCCCSSEEECTTSCEE
T ss_pred EEEcCCCeEeeeeEEEEEeccCccccCCCCCeEEccCCcEEEEeCCCCCCCCCeEEEeCCCccccCCCCcEEEcCCCcEE
Confidence 999998887778889999988866544 456789999999999999 888999999999975442 3455566788999
Q ss_pred EccCccCC-CeEEEEEEEeCCeeE---EEEEEEEEee-------CCeEEecC---CCcEEeeCCeEEEEEEEecCCCCeE
Q psy574 155 LSDVRLED-AGEYVCEAENAVGKI---SASATLTVQM-------APIVRERP---SDLRLEVGRDAVFLCGIEGSPPPST 220 (977)
Q Consensus 155 I~~v~~~D-~G~Y~C~a~n~~g~~---~~~~~L~V~~-------~p~~~~~p---~~~~v~~G~~v~L~C~~~g~p~~~i 220 (977)
|.+++.+| .|.|+|.|.|..+.. ...+.|.|.. +|.+...+ ....+.+|+.++|.|.+.+.|.+.+
T Consensus 175 i~~v~~~d~~G~Y~C~a~n~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~~~~G~~v~l~C~~~g~p~~~v 254 (404)
T 3p3y_A 175 FSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDI 254 (404)
T ss_dssp ESSCCSGGGSSCBEEEEECTTTCCEEECCCBCEEEECCSCCCCCCCCBSSSCSSEEEEEEETTSCEEEECCBCCSSCCEE
T ss_pred EEeeeeccCCcceEEEEEeccccceeccCceeEEEeccCCccccCCccccccCCCCCceEecCCCEEEEEEECCCCCCcE
Confidence 99999999 599999999987752 2235566653 23332222 2346889999999999999999999
Q ss_pred EEEEcCeeeeecCCCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEECCCCCCCCeEEeCC
Q psy574 221 FWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGP 300 (977)
Q Consensus 221 ~W~~~g~~~~~~~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~~~~~~pp~i~~~p 300 (977)
.|++++..+.. ...... . ....|.|.+++.+|+|.|+ |.|.|..|.....+.|.|.. +|.+...+
T Consensus 255 ~W~~~~~~~~~------~~~~~~-~--~~~~L~i~~~~~~d~G~Y~-C~a~n~~g~~~~~~~l~V~~-----~p~~~~~~ 319 (404)
T 3p3y_A 255 AWYKKGGDLPS------DKAKFE-N--FNKALRITNVSEEDSGEYF-CLASNKMGSIRHTISVRVKA-----APYWLDEP 319 (404)
T ss_dssp EEEETTBCCCT------TTEEEE-G--GGTEEEESSCCGGGCEEEE-EEEECSSCEEEEEEEEEEEE-----EEEEEECC
T ss_pred EEEECCEECCC------Cccccc-c--cCceEEEccCCHhHCEEEE-EEEEeCCCcEEEEEEEEEeC-----CCeeeccC
Confidence 99999987631 111222 1 2238999999999999999 99999999999999999988 78888889
Q ss_pred CceeecCCCcEEEEEEEcc--CceEEEEECCEEcCCCC--cEEEecCceEEEeccCCCCCeEEEEEEEcCCCceEEEEEE
Q psy574 301 ANQTLPLRSEARLRCQVRG--EGSVQWWRGEREVGSGP--RVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASL 376 (977)
Q Consensus 301 ~~~~v~~g~~~~L~C~~~~--~p~i~W~~~g~~l~~~~--~~~~~~~~sl~I~~v~~~d~G~Y~C~a~n~~G~~~~s~~l 376 (977)
.+..+..|+.+.|.|.+.+ .+.+.|+++|..+.... ......+++|.|.++...|+|.|+|.|.|..|....++.|
T Consensus 320 ~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l 399 (404)
T 3p3y_A 320 KNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTIIFRDTQISSRAVYQCNTSNEHGYLLANAFV 399 (404)
T ss_dssp CCEEECTTCCEEEECEEEEESCCEEEEEETTEEGGGSCCCTTEEEETTEEEESSCCSSCCCEEEEEEEETTEEEEEEEEE
T ss_pred CcceeecCCcEEEEEEccccCCCceEEEECCEecCCCCCCceEEecCCEEEEeecCHHHCEEEEEEEEeCCCcEEEEEEE
Confidence 9999999999999999998 77899999999986542 1222346789999999999999999999999999999988
Q ss_pred EEE
Q psy574 377 RFE 379 (977)
Q Consensus 377 ~v~ 379 (977)
.|.
T Consensus 400 ~V~ 402 (404)
T 3p3y_A 400 SVL 402 (404)
T ss_dssp EEC
T ss_pred EEE
Confidence 875
No 16
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J
Probab=100.00 E-value=2.9e-36 Score=362.26 Aligned_cols=451 Identities=18% Similarity=0.216 Sum_probs=317.7
Q ss_pred ecccceEEeCCCcEEEEEECCCCCCCC---eEEEEeCCEEe------e------cCCCceEEEec---Cc--EEEEcCCC
Q psy574 10 VQPKSQRVAAGDTALLECGPPRGHPEP---TLVWKKNGHPI------D------FENSKRLRLVD---GT--NLAIQDSR 69 (977)
Q Consensus 10 ~~p~~~~v~~G~~v~L~C~~~~g~P~~---~v~W~k~g~~l------~------~~~~~r~~~~~---~g--~L~I~~v~ 69 (977)
..|.++.+.+|++++|.|.+ .+.|.+ .|.|+|++..+ . ....+|+.+.. +| .|.|.+++
T Consensus 5 ~~P~~v~v~~G~~v~L~C~~-~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~ 83 (585)
T 2ocw_A 5 FGPEEVNSVEGNSVSITCYY-PPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLS 83 (585)
T ss_pred cCcceeEEecCCcEEEEEeC-CCCcCCCcccEEEEeCCCCCCceEEEECCCcccceeeceEEEEecCCCCEEEEEECCCC
Confidence 46788999999999999999 566543 89999998532 1 11235777653 33 59999999
Q ss_pred CCCCeEEEEEEEecCceeeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEeccc-CceEEEEEECCeeCC-------
Q psy574 70 KTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGD-AVLTVHWKRLGSAMP------- 141 (977)
Q Consensus 70 ~~D~G~Y~C~a~n~~g~~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~-p~~~i~W~k~~~~l~------- 141 (977)
.+|+|.|+|.|.|..+.. +..+.|.|..+|.+...+....+.+|+++.|.|.+.+. |.+.+.|+|++....
T Consensus 84 ~~D~G~Y~C~~~n~~~~~-~~~~~l~V~~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~ 162 (585)
T 2ocw_A 84 QDDSGRYKCGLGINSRGL-SFDVSLEVSQGPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSS 162 (585)
T ss_pred cccCEEEEEEcccCCCCc-eEEEEEEEecCccccCCCccEEEEcCCCEEEEEEecCCCCCccEEEEECCCCCceEEecCC
Confidence 999999999999887754 56689999999999999999999999999999999754 567899999976432
Q ss_pred -------CCceEEeccc------eEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEEeeCCeEEecCCCcEEeeCCeEEE
Q psy574 142 -------EDRMSVLPSR------SLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVF 208 (977)
Q Consensus 142 -------~~~~~~~~~~------~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L 208 (977)
.+++.+..++ +|.|.+++.+|+|.|+|.|.|..|.....+.|.|..++ |....+.+|+.++|
T Consensus 163 ~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~-----p~~~~~~~G~~v~l 237 (585)
T 2ocw_A 163 GYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPE-----PELVYEDLRGSVTF 237 (585)
T ss_pred cccCccccCcEEEEeccCCCcEEEEEEccCChhHCeEEEEEeccCCccccceEEEEEccCC-----CceeEEcCCCcEEE
Confidence 2455554333 79999999999999999999999988889999998654 34456789999999
Q ss_pred EEEEecCCC---CeEEEE-EcCe---eeeecCC----CccccEEEEEc-cCCceEEEEeecccCCCCeEEEEEEEcCCCc
Q psy574 209 LCGIEGSPP---PSTFWM-LEGN---RSLIYPG----DRVDNIQAEIT-SDGMNLLKIQNVSRTAAPLIILCLGVNAAGS 276 (977)
Q Consensus 209 ~C~~~g~p~---~~i~W~-~~g~---~~~~~~~----~~~~~~~~~~~-~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~ 276 (977)
.|.+ +.+. +.+.|+ ++|. .+..... ...+++.+... ..|...|.|.+++.+|+|.|+ |.|.|. |.
T Consensus 238 ~C~~-~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~i~~v~~~d~G~Y~-C~a~n~-g~ 314 (585)
T 2ocw_A 238 HCAL-GPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYL-CGAHSD-GQ 314 (585)
T ss_pred EEEc-CCCCCCceEEEEEeCCCCCcceEEeCCCcCCcccCCceEeeccCCCcEEEEEEccCChhhCEEEE-EEEEcC-CC
Confidence 9997 4444 578886 7773 2211111 12345554432 235458999999999999999 999995 44
Q ss_pred ee-----EEEEEEEECCCCCCCCeEEeCCCceeecCCCcEEEEEEEcc--CceE----EEEE--CCE--EcC--------
Q psy574 277 DL-----ARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG--EGSV----QWWR--GER--EVG-------- 333 (977)
Q Consensus 277 ~~-----~~~~l~V~~~~~~~pp~i~~~p~~~~v~~g~~~~L~C~~~~--~p~i----~W~~--~g~--~l~-------- 333 (977)
.. ..+.|.|.. +|.+...|....+..|+.+.|.|.+.+ .+.+ .|++ +|. .+.
T Consensus 315 ~~~~~~~~~~~l~V~~-----~p~~~~~~~~~~~~~G~~v~l~C~~~~~p~p~i~~w~~W~~~~~g~~~~l~~~~~~~~~ 389 (585)
T 2ocw_A 315 LQEGSPIQAWQLFVNE-----ESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKA 389 (585)
T ss_pred ccccCceeeEEEEEec-----ccccccCCcceEEEeCCcEEEEEecCCCCCccEEEEEEEEccCCCCCceeeeecceeec
Confidence 43 778888887 677777788888999999999999998 5555 7999 886 442
Q ss_pred -CCCcEEEe---cCce--EEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEECCCCCCCcccCCCCCCCCCCCCCCCeEE
Q psy574 334 -SGPRVNVT---GDGS--LVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLV 407 (977)
Q Consensus 334 -~~~~~~~~---~~~s--l~I~~v~~~d~G~Y~C~a~n~~G~~~~s~~l~v~~~~~~~~~~~~~~~~~~~p~~P~~~~v~ 407 (977)
...++.+. .+++ |.|.++...|+|.|+|.| |..|.....+.|.|...+.... .|....
T Consensus 390 ~~~~r~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a-n~~g~~~~~~~l~V~~~~p~~~-------------~~~~~~-- 453 (585)
T 2ocw_A 390 QYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLT-NGDTLWRTTVEIKIIEGEPNLK-------------VPGNVT-- 453 (585)
T ss_pred ccCCCEEEeccCCCcEEEEEECCCChhhCEEEEEcc-cCCCccceeEEEEEecCccccc-------------cCCcee--
Confidence 23455554 2344 999999999999999999 9999888889998876422111 122222
Q ss_pred eeCCCceEEEEEcCCCCCCcccceEEEEEeecCCCCCCCCCCCCcccEEEeceecCcCeEEEEccCCCCeEEEEEEEEcC
Q psy574 408 NQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNS 487 (977)
Q Consensus 408 ~~~~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~ 487 (977)
......+.|.+.......+ .-.+.|.++..+..............+...........++|.++.....-.|.|.|.|.
T Consensus 454 v~~G~~v~L~C~~~~~~~~--~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~ 531 (585)
T 2ocw_A 454 AVLGETLKVPCHFPCKFSS--YEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQG 531 (585)
T ss_pred EecCCcEEEEEEecCCCCC--CccEEEEEeecCceeeeccCCCCCcceEEecCcccEEEEEECCCCcccCeEEEEEeEeC
Confidence 2223456666654322001 11233433332211000000000001222211222357889999998889999999999
Q ss_pred CCCCCC
Q psy574 488 HGLSAP 493 (977)
Q Consensus 488 ~G~s~~ 493 (977)
.|.+..
T Consensus 532 ~G~~~~ 537 (585)
T 2ocw_A 532 HFYGET 537 (585)
T ss_pred CCccEE
Confidence 887643
No 17
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Probab=100.00 E-value=7.2e-38 Score=370.85 Aligned_cols=383 Identities=16% Similarity=0.195 Sum_probs=300.0
Q ss_pred ccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecCc
Q psy574 6 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAG 85 (977)
Q Consensus 6 ~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g 85 (977)
|.+...+.++.+.+|+.++|.|.+ .+ .|.|+|+|..+. ....+++|.|.+++.+|+|.|+|.+.| |
T Consensus 37 P~i~~~~~~~~v~~G~~v~l~C~~-~~----~v~W~~~~~~~~-------~~~~~~~L~I~~~~~~D~G~Y~C~a~n--g 102 (524)
T 2ec8_A 37 PSIHPGKSDLIVRVGDEIRLLCTD-PG----FVKWTFEILDET-------NENKQNEWITEKAEATNTGKYTCTNKH--G 102 (524)
T ss_dssp CEEESCCSEEECCTTSCEEEEEEC-TT----EEEEEEESSSCC-------EEECSSEEEESSCCSTTCEEEEEEETT--S
T ss_pred CccCCCCceEEEeCCCeEEEEEeC-Cc----eEEEcCCCcccc-------ccCccceEEEcccchhhCEEEEEeecC--C
Confidence 445556678899999999999998 44 899999998771 223467899999999999999999998 4
Q ss_pred eeeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEE-CCeeCCC-CceEEeccceEEEccCccCCC
Q psy574 86 TRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKR-LGSAMPE-DRMSVLPSRSLQLSDVRLEDA 163 (977)
Q Consensus 86 ~~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k-~~~~l~~-~~~~~~~~~~L~I~~v~~~D~ 163 (977)
. +..+.|.|..+|.+...+.+..+.+|+++.|.|.+.+.+.+.|.|++ ++..+.. .++.+..++.|.|.+++.+|+
T Consensus 103 ~--~~~~~l~V~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~v~W~~~~g~~l~~~~~~~~~~~~~L~i~~~~~~d~ 180 (524)
T 2ec8_A 103 L--SNSIYVFVRDPAKLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAYH 180 (524)
T ss_dssp C--EEEEEEECCCSSCSBCCCCCCCEETTSCEEECCCBSCCCCSCEEEECSSSCCCCSSCEEEEETTTEEEEESCCGGGT
T ss_pred c--ceEEEEEECCCCcccccccceEEEcCCeEEEECcCCCCccceEEEEccCCcCcCCCCceeECCCccEEEeccchhhC
Confidence 3 56788899888877777888899999999999999987778999998 7777754 455556788999999999999
Q ss_pred e-EEEEEEEeCCeeE-EEEEEEEEe----eCCeEEecCCCcEEeeCCeEEEEEEEecCCCCe-EEEEEcCeeeeecCCCc
Q psy574 164 G-EYVCEAENAVGKI-SASATLTVQ----MAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPS-TFWMLEGNRSLIYPGDR 236 (977)
Q Consensus 164 G-~Y~C~a~n~~g~~-~~~~~L~V~----~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~-i~W~~~g~~~~~~~~~~ 236 (977)
| .|+|.|.|..+.. +..+.|.|. .+|.+...+....+.+|+.++|.|.+.+.|.+. +.|++++..+.+. .
T Consensus 181 G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~~i~W~~~~~~~~~~---~ 257 (524)
T 2ec8_A 181 RLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQ---E 257 (524)
T ss_dssp TCEEEEEEC----CCCCCCEECCEECCCCSCCEEECSCSEEEEETTSCEEEEEEEEESSTTCEEEEEETTCSCCCC---E
T ss_pred CceEEEEEEECCceEEEEEEEEEEEeCCCCCCcEEecCCcceEEcCCcEEEEEEEecCCCcEEEEEEeCCCCCccc---c
Confidence 9 9999999987664 447888886 788898888888999999999999999999886 9999999773110 1
Q ss_pred cccEEEEE--ccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEECCCCCCCCeEEeCC---CceeecCCCcE
Q psy574 237 VDNIQAEI--TSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGP---ANQTLPLRSEA 311 (977)
Q Consensus 237 ~~~~~~~~--~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~~~~~~pp~i~~~p---~~~~v~~g~~~ 311 (977)
..+..... ...+.+.|.|.+++.+|+|.|+ |.|.|..|.....+.|.|.. +|.+...| ....+..|+.+
T Consensus 258 ~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~-C~a~n~~g~~~~~~~l~V~~-----~p~~~~~~~~~~~~~v~~G~~v 331 (524)
T 2ec8_A 258 KYNSWHHGDFNYERQATLTISSARVNDSGVFM-CYANNTFGSANVTTTLEVVD-----KGFINIFPMINTTVFVNDGENV 331 (524)
T ss_dssp EEEEEECSSSCEEEEEEEEESSCCTTTCEEEE-EEEECSSCEEEEEEEEEEES-----SCEEEEEESSCSEEEECTTCCE
T ss_pred ccccccccCCccceEEEEEECCCCHHHCEEEE-EEEEecCCceEEEEEEEEec-----cCceEeecCCCceEEEcCCCcE
Confidence 11111110 0012349999999999999999 99999999998899999997 66665544 36789999999
Q ss_pred EEEEEEcc--Cce-EEEEECCEEcCCCC-cEEEecC-------ceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEEC
Q psy574 312 RLRCQVRG--EGS-VQWWRGEREVGSGP-RVNVTGD-------GSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFES 380 (977)
Q Consensus 312 ~L~C~~~~--~p~-i~W~~~g~~l~~~~-~~~~~~~-------~sl~I~~v~~~d~G~Y~C~a~n~~G~~~~s~~l~v~~ 380 (977)
.|.|.+.+ .|. +.|+++|..+.... ++....+ .+|.|.++...|+|.|+|.|.|..|..+.++.|.|..
T Consensus 332 ~l~C~~~g~P~p~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~ 411 (524)
T 2ec8_A 332 DLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNT 411 (524)
T ss_dssp EEEEEEEEESCCCEEEEESSSCBCSSSBCCEESCCSSSCCEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECE
T ss_pred EEEEEEeecCCCcEEEEEECCeeccCCccceeEEccCCCceeEEEEEEeecCcccCeEEEEEEEecCceEEEEEEEEEec
Confidence 99999998 667 99999999887654 4443322 4799999999999999999999999999999998876
Q ss_pred CCCCCCcccCCCCCCCCCCCCCCCeEEeeCCCceEEEEEcCC
Q psy574 381 PTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGLTLAWSRNN 422 (977)
Q Consensus 381 ~~~~~~~~~~~~~~~~~p~~P~~~~v~~~~~~sv~lsW~~p~ 422 (977)
+|.... .+. ...+ .+.|...+.....+.|....
T Consensus 412 ~P~i~~----~~~--~~~g---~l~C~~~g~P~p~i~W~~~~ 444 (524)
T 2ec8_A 412 KPEILT----YDR--LVNG---MLQCVAAGFPEPTIDWYFCP 444 (524)
T ss_dssp EEEEEE----EEC--CSSS---CEEEEEEEESCCEEECCCC-
T ss_pred CCeEee----ccc--CcCc---EEEEEEEeecCCEEEEEECC
Confidence 543221 110 1112 66666666666788997764
No 18
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}
Probab=100.00 E-value=9.2e-38 Score=357.17 Aligned_cols=352 Identities=12% Similarity=0.094 Sum_probs=243.6
Q ss_pred cceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEec--CcEEEEcCCCCCCCeEEEEEEEecC
Q psy574 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD--GTNLAIQDSRKTDDGRYQCVVKNVA 84 (977)
Q Consensus 7 ~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~--~g~L~I~~v~~~D~G~Y~C~a~n~~ 84 (977)
.+..+|.++.|.+|++++|.|.+ .+.|.+.|.|+|++..+.... ++.... ..+|.|.+++.+|+|.|+|.|.|..
T Consensus 50 ~~~~~~~~v~V~~G~~v~L~C~v-~g~P~p~i~W~~~~~~l~~~~--~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~ 126 (423)
T 3qs7_E 50 GTVYEAAAVEVDVSASITLQVLV-DAPGNISCLWVFKHSSLNCQP--HFDLQNRGVVSMVILKMTETQAGEYLLFIQSEA 126 (423)
T ss_dssp ------CEEEECSSCCEEEEEEC-SCCSSCEEEEEETTEEECCCC--BC-----CEEEEEESSCCSSSCSEEEEEEEC--
T ss_pred cceeccccEEEecCCcEEEEEEE-EcCCCCeEEEEECCCccCccc--eeccccceEEEEEEeecCcccCEEEEEEEEcCC
Confidence 34556678999999999999999 789999999999998874321 111111 1369999999999999999999998
Q ss_pred ceeeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceEEeccceEEEcc-CccCCC
Q psy574 85 GTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSD-VRLEDA 163 (977)
Q Consensus 85 g~~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~~~~~L~I~~-v~~~D~ 163 (977)
|.. +..+.|.|..+|.+.. .....+..|+.+.|.|.+.|.|.|.|.|+|++..+....... ....+.... +...|+
T Consensus 127 g~~-~~~~~l~V~~~p~~~~-~~p~~~~~~~~~~L~C~a~G~P~P~i~W~k~~~~~~~~~~~~-~~~~~~~~~~l~~~d~ 203 (423)
T 3qs7_E 127 TNY-TILFTVSIRNTLLYTL-RRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEES-PAVVKKEEKVLHELFG 203 (423)
T ss_dssp CEE-EEEEEEEEC-----CE-EEEEEEECSSSSCEEEEEEESSCCEEEEEEC--------------CEEECCSEECCCCS
T ss_pred CcE-EEEEEEEEecCccccc-cCCcEeccCCceEEEEEEeeecCCeEEEEECCCCCccccccc-cccccccceEEecccC
Confidence 864 4567888886665421 122345678889999999999999999999987654211110 001111111 157899
Q ss_pred eEEEEEEEeCCeeEE-EEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEEec-CCCCeEEEEEcCeeeeecCCCccccEE
Q psy574 164 GEYVCEAENAVGKIS-ASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEG-SPPPSTFWMLEGNRSLIYPGDRVDNIQ 241 (977)
Q Consensus 164 G~Y~C~a~n~~g~~~-~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g-~p~~~i~W~~~g~~~~~~~~~~~~~~~ 241 (977)
|.|+|.|.|..|... ..+.|.|..+|.+ .+.+..+.+|+.++|.|.+.| .|.+.|.|+|++..+.. ...+.
T Consensus 204 G~Y~C~A~N~~G~~~~~~~~l~V~~~p~~--~~~~~~v~~G~~v~L~C~~~g~~p~p~i~W~k~g~~l~~-----~~~~~ 276 (423)
T 3qs7_E 204 TDIRCCARNELGRECTRLFTIDLNQTPQT--TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEE-----GNYFE 276 (423)
T ss_dssp SCEEEEEECSSCEEEEECEEEESSSCCCS--STTEEEEETTSCEEEEEEEEESSSCCCEEEEESSSBCCG-----GGEEE
T ss_pred eEEEEEEEcCCCCcceeeEEEEEecCCcc--CCCceEEeCCCeEEEEEEEEcCCCCcEEEEEECCEEccc-----cceee
Confidence 999999999999754 3477888766655 455778999999999999998 67799999999987631 11111
Q ss_pred EEEc-----cCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEECCCCCCCCeEEeCC--CceeecCCCcEEEE
Q psy574 242 AEIT-----SDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGP--ANQTLPLRSEARLR 314 (977)
Q Consensus 242 ~~~~-----~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~~~~~~pp~i~~~p--~~~~v~~g~~~~L~ 314 (977)
.... ......|.|.+++.+|+|.|+ |.|.|. ....+.|.|.. +|.+...+ ....+..|+.+.|.
T Consensus 277 ~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~-C~A~N~---~~~~~~L~V~~-----~p~i~~~~~~~~~~v~~G~~v~l~ 347 (423)
T 3qs7_E 277 MSTYSTNRTMIRILFAFVSSVARNDTGYYT-CSSSKH---PSQSALVTIVE-----KGFINATNSSEDYEIDQYEEFCFS 347 (423)
T ss_dssp EEEEETTTEEEEEEEEEESSCCTTTCEEEE-EEETTE---EEEEEEEEEES-----SCEEEEC---CEECCCTTCCCCEE
T ss_pred cccccCCceeEEEEEEEEeecCHHHCEEEE-EEEecC---CCceEEEEEEe-----CCcceEcCCCccEEecCCCeEEEE
Confidence 0000 001237999999999999999 999998 77778899987 56666555 34567889999999
Q ss_pred EEEcc--CceEEEEECCEEcCCCCcEEEecCceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEECC
Q psy574 315 CQVRG--EGSVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESP 381 (977)
Q Consensus 315 C~~~~--~p~i~W~~~g~~l~~~~~~~~~~~~sl~I~~v~~~d~G~Y~C~a~n~~G~~~~s~~l~v~~~ 381 (977)
|.+.+ .|.|.|+++|..+....+.. .....+.+......|+|.|+|.|.|..|..+.++.|.|...
T Consensus 348 C~~~g~P~p~i~W~k~g~~l~~~~~~~-~~~~~~~~~~~~~~D~G~YtC~A~N~~G~~~~s~~L~v~~~ 415 (423)
T 3qs7_E 348 VRFKAYPQIRCTWTFSRKSFPCEQKGL-DNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRSG 415 (423)
T ss_dssp EEEEEESCCEEEEEETTEEEECBCCBC-SSSSEEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC----
T ss_pred EEEEEcCCCeEEEEECCEECCCccccc-cCCcEEEEEecccccCEEEEEEEEcCCceEEEEEEEEEecC
Confidence 99999 77999999999885542100 01112223556678999999999999999999999998754
No 19
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}
Probab=100.00 E-value=3.4e-37 Score=362.00 Aligned_cols=379 Identities=11% Similarity=0.097 Sum_probs=262.4
Q ss_pred ecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecC--cEEEEcCCCCCCCeEEEEEEEecCcee
Q psy574 10 VQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG--TNLAIQDSRKTDDGRYQCVVKNVAGTR 87 (977)
Q Consensus 10 ~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~--g~L~I~~v~~~D~G~Y~C~a~n~~g~~ 87 (977)
.++..+.|.+|++++|+|.+ .+.|...+.|++|+..+... ..+..... .+|.|.+++.+|+|.|+|.|.|..+..
T Consensus 53 ~~~~~~~v~~g~~~~L~c~~-~~~~~~~~~W~~~~~~l~~~--~~~~~~~r~~~SL~I~~v~~~D~G~Y~C~~~n~~~~~ 129 (527)
T 3qs9_E 53 YEAAAVEVDVSASITLQVLV-DAPGNISCLWVFKHSSLNCQ--PHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNY 129 (527)
T ss_dssp ---CEEEECSSCCEEEEEEC-SCCSSCEEEEEETTEEECCC--CBC-----CEEEEEESSCCSSSCSEEEEEEEC--CEE
T ss_pred eeeeeEEEeccccEEEEEEE-ecCCceeEEEEecCCccCcc--cccCCCcceEEEEEECcCChhhCeeEEEEEEeccccE
Confidence 45557999999999999999 78888999999999987421 12222212 259999999999999999999987653
Q ss_pred eeEeEEEEEEcCCeEEeCC-CceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceEEeccceEEEccCccCCCeEE
Q psy574 88 ESTDAVLRVLVKPYIIRGP-KDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEY 166 (977)
Q Consensus 88 ~s~~~~l~V~~~P~~~~~p-~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~D~G~Y 166 (977)
. ..+.|.|. |.+...+ .......|+.+.|.|.+.|.|.|.|.|++++..+...+.............+..+|+|.|
T Consensus 130 ~-~~~~v~v~--~~~~~~~~~p~~~~~~~~~~L~C~a~G~P~P~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~G~Y 206 (527)
T 3qs9_E 130 T-ILFTVSIR--NTLLYTLRRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHELFGTDI 206 (527)
T ss_dssp E-EEEEEEEC-------CEEEEEEEECSSSSCEEEEEEESSCCEEEEEEC-------------CEEECCSEECCCCSSCE
T ss_pred E-EEEEEEEC--CceeeccCCCcEEecCCceEEEEEEceecCCeEEEEECCCCCccccccCCcEEEEeeeeccccCCEEE
Confidence 3 33344443 4333222 223445688889999999999999999999876542211100111122233457899999
Q ss_pred EEEEEeCCeeEEEE-EEEEEeeCCeEEecCCCcEEeeCCeEEEEEEEe-cCCCCeEEEEEcCeeeeecCCCccccEEEEE
Q psy574 167 VCEAENAVGKISAS-ATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIE-GSPPPSTFWMLEGNRSLIYPGDRVDNIQAEI 244 (977)
Q Consensus 167 ~C~a~n~~g~~~~~-~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~-g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~ 244 (977)
+|.|.|..|..... +.|.|..+|.+ .|.+..+.+|+.+.|.|.+. +.|.+.|.|++++..+.. ...+....
T Consensus 207 ~C~A~N~~G~~~~~~~~l~V~~~p~~--~p~~~~v~~G~~v~L~C~~~~g~p~p~i~W~k~g~~l~~-----~~~~~~~~ 279 (527)
T 3qs9_E 207 RCCARNELGRECTRLFTIDLNQTPQT--TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEE-----GNYFEMST 279 (527)
T ss_dssp EEEEECSSCEEEEECEEEESSSCCCC--SCCEEEECTTSCEEEEEEEEESSSCCCEEEECSSSCCCG-----GGEEEEEE
T ss_pred EEEEEeCCCcccceEEEEEEeccCcc--CCCceEEeCCCeEEEEEEEccCCCCeEEEEEECCEECCC-----Cceeeeee
Confidence 99999999986544 78888877776 66778899999999999996 899999999999986532 11121111
Q ss_pred cc-----CCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEECCCCCCCCeEEeCCC--ceeecCCCcEEEEEEE
Q psy574 245 TS-----DGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPA--NQTLPLRSEARLRCQV 317 (977)
Q Consensus 245 ~~-----~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~~~~~~pp~i~~~p~--~~~v~~g~~~~L~C~~ 317 (977)
.. ....+|.|.+++.+|+|.|+ |.|.|. ....+.|.|.. +|.+...+. ...+..|+.+.|.|.+
T Consensus 280 ~~~~~~~~~~~~L~I~~v~~~DsG~Y~-C~a~N~---~~~~~~L~V~~-----~p~i~~~~~~~~~~v~~G~~v~L~C~~ 350 (527)
T 3qs9_E 280 YSTNRTMIRILFAFVSSVARNDTGYYT-CSSSKH---PSQSALVTIVE-----KGFINATNSSEDYEIDQYEEFCFSVRF 350 (527)
T ss_dssp EETTTEEEEEEEEEESSCCGGGCEEEE-EEETTE---EEEEEEEEEC-------CEEECCCSCCEECCCTTCCCCEEEEE
T ss_pred eccCcceeeEEEEEEccCCcccCeEEE-EEEEeC---CCceEEEEEEc-----cCccccccCcccEEEcCCCeEEEEEEE
Confidence 00 01237999999999999999 999998 66777888876 566655543 3567889999999999
Q ss_pred cc--CceEEEEECCEEcCCCCcEEEecCceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEECCCCCCCcccCCCCCC
Q psy574 318 RG--EGSVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPS 395 (977)
Q Consensus 318 ~~--~p~i~W~~~g~~l~~~~~~~~~~~~sl~I~~v~~~d~G~Y~C~a~n~~G~~~~s~~l~v~~~~~~~~~~~~~~~~~ 395 (977)
.+ .|.|.|+++|..+....+.. ...++|.|.++...|+|.|+|.|.|..|....++.|.|..+|.... .+
T Consensus 351 ~g~P~p~i~W~k~g~~l~~~~~~~-~~~~~L~I~~v~~~D~G~YtC~A~N~~g~~~~~~~L~V~~~P~i~~----~~--- 422 (527)
T 3qs9_E 351 KAYPQIRCTWTFSRKSFPCEQKGL-DNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRRKPQVLA----EA--- 422 (527)
T ss_dssp EEESCCEEEEEETTEEEECBCCBC-SSSSEEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC--CCCEEEE----CC---
T ss_pred EecCCCEEEEEECCEECcCCcccc-cCCcEEEEecCCcccCEEEEEEEEeCCCcEEEEEEEEEecCCeEEE----eC---
Confidence 99 77899999999886654422 2556899999999999999999999999999999999886653221 11
Q ss_pred CCCCCCCCCeEEeeCCCceEEEEEcCC
Q psy574 396 TYPGPPTKPTLVNQTANGLTLAWSRNN 422 (977)
Q Consensus 396 ~~p~~P~~~~v~~~~~~sv~lsW~~p~ 422 (977)
. -..+.|...+.....+.|....
T Consensus 423 ---~-~~~l~C~a~g~P~p~i~W~~~~ 445 (527)
T 3qs9_E 423 ---S-ASQASCFSDGYPLPSWTWKKCS 445 (527)
T ss_dssp ---C-CE---EEEECSSCCEEEEECCC
T ss_pred ---C-CCEEEEEEEEEcCCeEEEEECC
Confidence 1 1234566566666789997543
No 20
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Probab=100.00 E-value=1.5e-37 Score=368.02 Aligned_cols=357 Identities=17% Similarity=0.232 Sum_probs=274.2
Q ss_pred cceecccceEEeCCCcEEEEEECCCCCCCCeEEEEe-CCEEeecCCCceEEEecCcEEEEcCCCCCCCe-EEEEEEEecC
Q psy574 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKK-NGHPIDFENSKRLRLVDGTNLAIQDSRKTDDG-RYQCVVKNVA 84 (977)
Q Consensus 7 ~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k-~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G-~Y~C~a~n~~ 84 (977)
.+...|.++.+.+|+.++|.|.+ .+.|.+.|.|+| ||+.+. ...++.+..++.|.|.+++.+|+| .|+|.|.|..
T Consensus 116 ~~~~~~~~~~v~~G~~v~l~C~~-~~~~~~~v~W~~~~g~~l~--~~~~~~~~~~~~L~i~~~~~~d~G~~Y~C~a~n~~ 192 (524)
T 2ec8_A 116 KLFLVDRSLYGKEDNDTLVRCPL-TDPEVTNYSLKGCQGKPLP--KDLRFIPDPKAGIMIKSVKRAYHRLCLHCSVDQEG 192 (524)
T ss_dssp CSBCCCCCCCEETTSCEEECCCB-SCCCCSCEEEECSSSCCCC--SSCEEEEETTTEEEEESCCGGGTTCEEEEEEC---
T ss_pred cccccccceEEEcCCeEEEECcC-CCCccceEEEEccCCcCcC--CCCceeECCCccEEEeccchhhCCceEEEEEEECC
Confidence 34467778899999999999999 677779999988 888884 345788888899999999999999 9999999987
Q ss_pred ceeeeEeEEEEEE----cCCeEEeCCCceEEeCCCeEEEEEEecccCceE-EEEEECCeeC--CCC-ceE------Eecc
Q psy574 85 GTRESTDAVLRVL----VKPYIIRGPKDTTVSASSIIVFECSVGGDAVLT-VHWKRLGSAM--PED-RMS------VLPS 150 (977)
Q Consensus 85 g~~~s~~~~l~V~----~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~-i~W~k~~~~l--~~~-~~~------~~~~ 150 (977)
+...+..+.|.|. .+|.+...|.+..+.+|+++.|.|.+.|.|.+. +.|+|++..+ ... +.. ....
T Consensus 193 ~~~~s~~~~l~V~~~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (524)
T 2ec8_A 193 KSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQ 272 (524)
T ss_dssp -CCCCCCEECCEECCCCSCCEEECSCSEEEEETTSCEEEEEEEEESSTTCEEEEEETTCSCCCCEEEEEEECSSSCEEEE
T ss_pred ceEEEEEEEEEEEeCCCCCCcEEecCCcceEEcCCcEEEEEEEecCCCcEEEEEEeCCCCCccccccccccccCCccceE
Confidence 7666667889887 788998999899999999999999999988876 9999999883 221 111 2245
Q ss_pred ceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEEeeCCeEEecCC---CcEEeeCCeEEEEEEEecCCCCe-EEEEEcC
Q psy574 151 RSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERPS---DLRLEVGRDAVFLCGIEGSPPPS-TFWMLEG 226 (977)
Q Consensus 151 ~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~~~p~~~~~p~---~~~v~~G~~v~L~C~~~g~p~~~-i~W~~~g 226 (977)
+.|.|.+++.+|+|.|+|.|.|..|.....+.|.|..+|.+...|. ...+.+|+.++|.|.+.|.|.+. +.|+++|
T Consensus 273 ~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~~v~W~k~g 352 (524)
T 2ec8_A 273 ATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMN 352 (524)
T ss_dssp EEEEESSCCTTTCEEEEEEEECSSCEEEEEEEEEEESSCEEEEEESSCSEEEECTTCCEEEEEEEEEESCCCEEEEESSS
T ss_pred EEEEECCCCHHHCEEEEEEEEecCCceEEEEEEEEeccCceEeecCCCceEEEcCCCcEEEEEEEeecCCCcEEEEEECC
Confidence 7899999999999999999999999988899999999998887664 57899999999999999999998 9999999
Q ss_pred eeeeecCCCccccEEEEEcc---CCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEECCCCCCCCeEEeCCCce
Q psy574 227 NRSLIYPGDRVDNIQAEITS---DGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQ 303 (977)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~---~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~~~~~~pp~i~~~p~~~ 303 (977)
..+... ..++...... .+.+.|.|.+++.+|+|.|+ |.|.|..|.....+.|.|.. +|.+...+.
T Consensus 353 ~~~~~~----~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~-C~a~N~~g~~~~~~~l~V~~-----~P~i~~~~~-- 420 (524)
T 2ec8_A 353 RTFTDK----WEDYPKSENESNIRYVSELHLTRLKGTEGGTYT-FLVSNSDVNAAIAFNVYVNT-----KPEILTYDR-- 420 (524)
T ss_dssp CBCSSS----BCCEESCCSSSCCEEEEEEEECSCCGGGCEEEE-EEEECSSCEEEEEEEEEECE-----EEEEEEEEC--
T ss_pred eeccCC----ccceeEEccCCCceeEEEEEEeecCcccCeEEE-EEEEecCceEEEEEEEEEec-----CCeEeeccc--
Confidence 876421 1133222110 02359999999999999999 99999999999999999987 677665443
Q ss_pred eecCCCcEEEEEEEcc--CceEEEEECCEEcC--------CCC---cEEEecCceEEE----eccCCCCCeEEEEEEEcC
Q psy574 304 TLPLRSEARLRCQVRG--EGSVQWWRGEREVG--------SGP---RVNVTGDGSLVL----TDVTKEDSGEYTCVVKSP 366 (977)
Q Consensus 304 ~v~~g~~~~L~C~~~~--~p~i~W~~~g~~l~--------~~~---~~~~~~~~sl~I----~~v~~~d~G~Y~C~a~n~ 366 (977)
...| .|.|.+.| .|.|.|++++..+. .+. ......++.+.+ ......|.|.|+|.|.|.
T Consensus 421 -~~~g---~l~C~~~g~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~l~~~~~~d~G~Y~C~a~N~ 496 (524)
T 2ec8_A 421 -LVNG---MLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAYND 496 (524)
T ss_dssp -CSSS---CEEEEEEEESCCEEECCCC----------CCCCCCCCCCC-CCSSSCEEEEEEECCCSCCC-----CEEECS
T ss_pred -CcCc---EEEEEEEeecCCEEEEEECCCcccccccccCCCCceeeeeccCCCCcceEEEEEEEEEccCCEEEEEEEEcC
Confidence 3445 99999999 77999999987652 111 122344555553 333458999999999999
Q ss_pred CCceEEEEEEEEECCC
Q psy574 367 HGSASWSASLRFESPT 382 (977)
Q Consensus 367 ~G~~~~s~~l~v~~~~ 382 (977)
.|..+..+.|.|.+.+
T Consensus 497 ~G~~~~~~~l~V~e~~ 512 (524)
T 2ec8_A 497 VGKTSAYFNFAFKGNN 512 (524)
T ss_dssp SCEEECCCCCCC----
T ss_pred CCceEEEEEEEEecCC
Confidence 9999999988888654
No 21
>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}
Probab=100.00 E-value=2.9e-35 Score=348.45 Aligned_cols=357 Identities=17% Similarity=0.223 Sum_probs=264.5
Q ss_pred ceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCC--EEee----------cCCCceEEEecC---cEEEEcCCCCCC
Q psy574 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNG--HPID----------FENSKRLRLVDG---TNLAIQDSRKTD 72 (977)
Q Consensus 8 ~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g--~~l~----------~~~~~r~~~~~~---g~L~I~~v~~~D 72 (977)
+..+|.++.+.+|++++|.|.+ .+.|.+.|.|+|++ ..+. .....|+....+ ++|.|.+++.+|
T Consensus 3 v~~~p~~~~v~~G~~v~L~C~~-~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D 81 (523)
T 2rcj_C 3 VLTQPPSASGTPGQRVTISCTG-TSSGSITVNWYQQLPGMAPKLLIYRDAMRPSGVPTRFSGSKSGTSASLAISGLEAED 81 (523)
T ss_pred ccccCCceEEecCCcEEEEEEE-eccCCceEEEEEeCCCCCcEEEEEeccccCcccCCcEEEecCCCEEEEEECCCChhh
Confidence 4456888999999999999999 77889999999974 2211 112356665433 379999999999
Q ss_pred CeEEEEEEEecCcee--eeEeEEEEE----EcCCeEEeCCCceEEeCCCeEEEEEEecccCce--EEEEEECCeeCCCCc
Q psy574 73 DGRYQCVVKNVAGTR--ESTDAVLRV----LVKPYIIRGPKDTTVSASSIIVFECSVGGDAVL--TVHWKRLGSAMPEDR 144 (977)
Q Consensus 73 ~G~Y~C~a~n~~g~~--~s~~~~l~V----~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~--~i~W~k~~~~l~~~~ 144 (977)
+|.|+|.|.|..|.. .+..+.|.| ..+|.+...+....+.+|+.+.|.|.+.|.|.+ .|.|+|++..+..+.
T Consensus 82 ~G~Y~C~a~n~~g~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~ 161 (523)
T 2rcj_C 82 ESDYYCASWNSSDNSYVFGTGTKVTVLGQPKANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGV 161 (523)
T ss_pred CEEEEEEEccCCCccccccCceEEEeccCCCcCCeEEecCCcccccCCCceEEEEEeccccCCceEEEEecCCCCCCCce
Confidence 999999999976532 234567888 456777777777778899999999999887653 999999998886542
Q ss_pred eEE----ecc------ceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEE----eeCCeEEecCCCcEEeeCCeEEEEE
Q psy574 145 MSV----LPS------RSLQLSDVRLEDAGEYVCEAENAVGKISASATLTV----QMAPIVRERPSDLRLEVGRDAVFLC 210 (977)
Q Consensus 145 ~~~----~~~------~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V----~~~p~~~~~p~~~~v~~G~~v~L~C 210 (977)
... ..+ ..|.|.++..+|+|.|+|.|.|..+.....+.+.+ ..+|.+...+....+.+|+.++|.|
T Consensus 162 ~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~~~~~~~~P~v~~~~~~~~~~~G~~~~l~C 241 (523)
T 2rcj_C 162 ETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECSASTKGPSVFPLAPSSKSTSGGTAALGC 241 (523)
T ss_pred EeccccccCCCCEEEEEEEEEechhcCCCceEEEEEEecCcccccceeeeecCCCCcCCEEEecCCCcccccCCceEEEE
Confidence 211 111 36999999999999999999999887665555432 3566666444455678999999999
Q ss_pred EEecC-CCC-eEEEEEcCeeeeecCC----CccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEE
Q psy574 211 GIEGS-PPP-STFWMLEGNRSLIYPG----DRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLT 284 (977)
Q Consensus 211 ~~~g~-p~~-~i~W~~~g~~~~~~~~----~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~ 284 (977)
.+.|. |.+ .|.|+++|..+..... ...+.+.. .+.|.|.+++.+| |.|+ |.|.|..|.....+.|.
T Consensus 242 ~~~g~~P~p~~v~W~k~g~~~~~~~~~~~~~~~g~~~~------~s~L~i~~~~~~d-G~Y~-C~a~n~~g~~~~~~~l~ 313 (523)
T 2rcj_C 242 LVKDYFPQPVTVSWNSGALTSGVHTFPAVLQSSGLYSL------SSVVTVPSSSLGT-QTYI-CNVNHKPSNTKVDKRVE 313 (523)
T ss_pred EEeceeCCCeEEEEecCCcccceEeCCcEecCCCcEEE------EEEEEechhhcCC-ceEE-EEEEeCCCCcceEEecC
Confidence 99886 777 8999999976421110 01111111 2489999999999 9999 99999999877777776
Q ss_pred EECCCCCCCCeEEeCCCcee-ecCCCcEEEEEEEcc-C-----ceEEEEECCEEcCCCCcE--EEecC------ceEEEe
Q psy574 285 VSGPDPNPPPVILFGPANQT-LPLRSEARLRCQVRG-E-----GSVQWWRGEREVGSGPRV--NVTGD------GSLVLT 349 (977)
Q Consensus 285 V~~~~~~~pp~i~~~p~~~~-v~~g~~~~L~C~~~~-~-----p~i~W~~~g~~l~~~~~~--~~~~~------~sl~I~ 349 (977)
|... |..+...|.... +..|+.+.|.|.+.+ + +.|.|+++|..+...... ....+ +.|.|.
T Consensus 314 v~~~----P~~~~~~p~~~~~v~~g~~~~l~C~~~g~~p~~~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~L~i~ 389 (523)
T 2rcj_C 314 PLSL----PSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPQVKFNWYVDGVQVHNAKTKPREQQYNSTYRVVSVLTVL 389 (523)
T ss_pred CCcC----ceEEecCCCchhhcccCCceEEEEEEecccCCCCceEEEEEECCeEccCCccCCceecCCCcEEEEEEEEEC
Confidence 6542 334455565454 788999999999998 2 389999999988654321 11222 248888
Q ss_pred ccCCCCCeEEEEEEEcCCCceEEEEEEE
Q psy574 350 DVTKEDSGEYTCVVKSPHGSASWSASLR 377 (977)
Q Consensus 350 ~v~~~d~G~Y~C~a~n~~G~~~~s~~l~ 377 (977)
.+...|.|.|+|.|.|..+.......+.
T Consensus 390 ~~~~~d~G~Y~C~a~n~~~~~~~~~~~~ 417 (523)
T 2rcj_C 390 HQNWLDGKEYKCKVSNKALPAPIEKTIS 417 (523)
T ss_pred HHHhcCCCeEEEEEeCCCCCCceeEEEE
Confidence 8999999999999999888765555454
No 22
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J
Probab=100.00 E-value=6.2e-35 Score=350.73 Aligned_cols=363 Identities=20% Similarity=0.277 Sum_probs=279.3
Q ss_pred cccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEee-----------cCCCceEEEecCc------EEEEcC
Q psy574 5 REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPID-----------FENSKRLRLVDGT------NLAIQD 67 (977)
Q Consensus 5 ~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~-----------~~~~~r~~~~~~g------~L~I~~ 67 (977)
.|.|...|..+.+.+|+.++|.|.+..+.|.+.|.|+|++..+. .....|+.+..++ +|.|.+
T Consensus 112 ~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~ 191 (585)
T 2ocw_A 112 GPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQ 191 (585)
T ss_pred CccccCCCccEEEEcCCCEEEEEEecCCCCCccEEEEECCCCCceEEecCCcccCccccCcEEEEeccCCCcEEEEEEcc
Confidence 35677788889999999999999994456678899999885421 0123566666544 699999
Q ss_pred CCCCCCeEEEEEEEecCceeeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEecccCc---eEEEEE-ECCeeC---
Q psy574 68 SRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAV---LTVHWK-RLGSAM--- 140 (977)
Q Consensus 68 v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~---~~i~W~-k~~~~l--- 140 (977)
++.+|+|.|+|.|.|..|. .+..+.|.|..+| |..+.+.+|+.+.|.|.+. .+. +.+.|+ +++...
T Consensus 192 v~~~D~G~Y~C~a~n~~g~-~~~~~~l~V~~~~-----p~~~~~~~G~~v~l~C~~~-~~~~~~~~~~w~~~~g~~~~~~ 264 (585)
T 2ocw_A 192 LRLSDAGQYLCQAGDDSNS-NKKNADLQVLKPE-----PELVYEDLRGSVTFHCALG-PEVANVAKFLCRQSSGENCDVV 264 (585)
T ss_pred CChhHCeEEEEEeccCCcc-ccceEEEEEccCC-----CceeEEcCCCcEEEEEEcC-CCCCCceEEEEEeCCCCCcceE
Confidence 9999999999999998876 4466788887643 4556788999999999984 333 789997 777321
Q ss_pred ----------CCCceEEec---cc--eEEEccCccCCCeEEEEEEEeCCeeEE-----EEEEEEEeeCCeEEecCCCcEE
Q psy574 141 ----------PEDRMSVLP---SR--SLQLSDVRLEDAGEYVCEAENAVGKIS-----ASATLTVQMAPIVRERPSDLRL 200 (977)
Q Consensus 141 ----------~~~~~~~~~---~~--~L~I~~v~~~D~G~Y~C~a~n~~g~~~-----~~~~L~V~~~p~~~~~p~~~~v 200 (977)
..+++.+.. ++ .|.|.+++.+|+|.|+|.|.|. |... ..+.|.|..+|.+...|....+
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~g~~~L~i~~v~~~d~G~Y~C~a~n~-g~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~ 343 (585)
T 2ocw_A 265 VNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSD-GQLQEGSPIQAWQLFVNEESTIPRSPTVVKG 343 (585)
T ss_pred EeCCCcCCcccCCceEeeccCCCcEEEEEEccCChhhCEEEEEEEEcC-CCccccCceeeEEEEEecccccccCCcceEE
Confidence 123444432 34 7999999999999999999995 4433 7889999999999888888999
Q ss_pred eeCCeEEEEEEEecCCCCeE----EEEE--cCe--eeeecC----CCccccEEEEEc-cCCceEEEEeecccCCCCeEEE
Q psy574 201 EVGRDAVFLCGIEGSPPPST----FWML--EGN--RSLIYP----GDRVDNIQAEIT-SDGMNLLKIQNVSRTAAPLIIL 267 (977)
Q Consensus 201 ~~G~~v~L~C~~~g~p~~~i----~W~~--~g~--~~~~~~----~~~~~~~~~~~~-~~g~s~L~I~~v~~~d~G~Y~~ 267 (977)
.+|+.++|.|.+.+.|.+.+ .|++ +|. .+.... ....+++.+... ..|...|.|.+++.+|+|.|+
T Consensus 344 ~~G~~v~l~C~~~~~p~p~i~~w~~W~~~~~g~~~~l~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~~~D~G~Y~- 422 (585)
T 2ocw_A 344 VAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYW- 422 (585)
T ss_pred EeCCcEEEEEecCCCCCccEEEEEEEEccCCCCCceeeeecceeecccCCCEEEeccCCCcEEEEEECCCChhhCEEEE-
Confidence 99999999999999999977 7999 776 443211 112445655532 235456999999999999999
Q ss_pred EEEEcCCCceeEEEEEEEECCCCCCCCeEEeCCCceeecCCCcEEEEEEEc----c--CceEEEEECCEEcCCCCc----
Q psy574 268 CLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVR----G--EGSVQWWRGEREVGSGPR---- 337 (977)
Q Consensus 268 C~a~n~~g~~~~~~~l~V~~~~~~~pp~i~~~p~~~~v~~g~~~~L~C~~~----~--~p~i~W~~~g~~l~~~~~---- 337 (977)
|.| |..|.....+.|.|... +|.+. .|.+..+..|+.+.|.|.+. + .+.|.|+++|..+.....
T Consensus 423 C~a-n~~g~~~~~~~l~V~~~----~p~~~-~~~~~~v~~G~~v~L~C~~~~~~~~~p~~~v~W~k~g~~~~~~~~~~~~ 496 (585)
T 2ocw_A 423 CLT-NGDTLWRTTVEIKIIEG----EPNLK-VPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPS 496 (585)
T ss_pred Ecc-cCCCccceeEEEEEecC----ccccc-cCCceeEecCCcEEEEEEecCCCCCCccEEEEEeecCceeeeccCCCCC
Confidence 999 99998888899999873 34433 36788899999999999997 3 567999999987743311
Q ss_pred ---EEEecC---ceEEEeccCCCCCeEEEEEEEcCCCceEE-EEEEEEECCC
Q psy574 338 ---VNVTGD---GSLVLTDVTKEDSGEYTCVVKSPHGSASW-SASLRFESPT 382 (977)
Q Consensus 338 ---~~~~~~---~sl~I~~v~~~d~G~Y~C~a~n~~G~~~~-s~~l~v~~~~ 382 (977)
+.+..+ ++|.|.++...|+|.|+|.|.|..|.... .+.|.|.+++
T Consensus 497 ~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~~l~V~~~p 548 (585)
T 2ocw_A 497 KAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVEERK 548 (585)
T ss_pred cceEEecCcccEEEEEECCCCcccCeEEEEEeEeCCCccEEEEEEEEEEeee
Confidence 222222 47999999999999999999999997654 4889998764
No 23
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Probab=100.00 E-value=1.5e-33 Score=320.38 Aligned_cols=359 Identities=20% Similarity=0.294 Sum_probs=273.0
Q ss_pred CCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEEC--CeeCCC------CceEEe---ccceEEEccCccCCCeEEE
Q psy574 99 KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRL--GSAMPE------DRMSVL---PSRSLQLSDVRLEDAGEYV 167 (977)
Q Consensus 99 ~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~--~~~l~~------~~~~~~---~~~~L~I~~v~~~D~G~Y~ 167 (977)
+|.+.. +.+..+.+|+++.|.|.+.|.|.+.|.|+|+ +..+.. +++.+. ..+.|.|.+++.+|+|.|+
T Consensus 1 ~P~i~~-~~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~ 79 (389)
T 2jll_A 1 QPHIIQ-LKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYD 79 (389)
T ss_dssp CCEEEE-CCCEEEETTSEEEEEEEEECSSCCEEEEEETTTTEEECC--CCSSSSEEEEECSSEEEEEEESCCGGGCEEEE
T ss_pred CCeEEe-cCceEEeCCCeEEEEEEeecccCCeEEEEeCCCCceeccCcCCCCCeEEEeccCCcceEEEcccChhhCEEEE
Confidence 466666 6677888999999999999999999999999 777643 455554 3468999999999999999
Q ss_pred EEEEeCCeeEEEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCccccEEEEEccC
Q psy574 168 CEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSD 247 (977)
Q Consensus 168 C~a~n~~g~~~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~ 247 (977)
|.|.|..|..+..+.|.|..+|.+...+....+.+|+.+.|.|.+.|.|.+.+.|+++|..+.. ....++.+... .
T Consensus 80 C~a~n~~g~~~~~~~l~V~~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~l~~---~~~~~~~~~~~-~ 155 (389)
T 2jll_A 80 CEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPA---KNTTNLKTYST-G 155 (389)
T ss_dssp EEEECSSCEEEEEEEEEEEEEEEECCSCCEEEECTTCCEEEEECEEEESCCEEEEEETTEESSC---TTCTTEEEEEC-S
T ss_pred EEEEeCCCCcceEEEEEEEeCCEEecCcceEEeccCCEEEEEEEEEecCCCeEEEEECCccCCc---ccCceEEEecc-C
Confidence 9999999999999999999999988776666789999999999999999999999999987642 12235555543 3
Q ss_pred CceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEECCCCCCCCeEEeCCCceeecCCCcEEEEEEEcc----Cc--
Q psy574 248 GMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG----EG-- 321 (977)
Q Consensus 248 g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~~~~~~pp~i~~~p~~~~v~~g~~~~L~C~~~~----~p-- 321 (977)
+.+.|.|.++...|+|.|+ |.|.|..|.....+.|.+...+. +|... ......+..+.|.|.... .+
T Consensus 156 ~~~~L~i~~~~~~d~G~Y~-C~a~N~~G~~~~~~~l~v~~~P~--~P~~~----~~~~~~~~~~~l~w~~p~~~~g~pi~ 228 (389)
T 2jll_A 156 RKMILEIAPTSDNDFGRYN-CTATNHIGTRFQEYILALADVPS--SPYGV----KIIELSQTTAKVSFNKPDSHGGVPIH 228 (389)
T ss_dssp SCEEEEECCCSTTSSEEEE-EEEEETTEEEEEEEEEEECCCCC--CCEEE----EEEEECSSCEEEEEECCSCCTTSCEE
T ss_pred CEEEEEECCCChhhCEEEE-EEEEcCCCcEEEEEEEEecCCCC--CCcce----EEeeccCCEEEEEEeCCCCCCCcceE
Confidence 4468999999999999999 99999999988888887765321 22111 112234567899997432 23
Q ss_pred --eEEEEECCEEcCCCCcEEEe-cCceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEECCCCCCCcccCCCCCCCCC
Q psy574 322 --SVQWWRGEREVGSGPRVNVT-GDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYP 398 (977)
Q Consensus 322 --~i~W~~~g~~l~~~~~~~~~-~~~sl~I~~v~~~d~G~Y~C~a~n~~G~~~~s~~l~v~~~~~~~~~~~~~~~~~~~p 398 (977)
.+.|.+++..... .+... ....+.|.++.+.+.|.|+|.|.|..|.+..+..+.+...+ ..+|
T Consensus 229 ~y~v~~~~~~~~~~~--~~~~~~~~~~~~i~~l~~~~~y~~~v~A~N~~G~~~~s~~~~~~t~~------------~~~p 294 (389)
T 2jll_A 229 HYQVDVKEVASEIWK--IVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLP------------VREP 294 (389)
T ss_dssp EEEEEEEETTCSCCE--EEECSTTCSEEEECSCCTTCEEEEEEEEEESSCBCCCCCCEEEECCC------------CCCC
T ss_pred EEEEEEEECCCcccE--EeeccCCcceEEECCccCCCEEEEEEEEEcCCccCCCCcceEEEecC------------CCCC
Confidence 4678877642110 11111 23569999999999999999999999987666655554321 1356
Q ss_pred CCCCCCeEEeeCCCceEEEEEcCCCCCCcccceEEEEEeecCCCCCCCCCCCCcccEEE-eceecCcCeEEEEccCCCCe
Q psy574 399 GPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVR-VATNVPSPILTVTNLTVGLT 477 (977)
Q Consensus 399 ~~P~~~~v~~~~~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~-~~~~~~~~~~~i~~L~p~t~ 477 (977)
.+|. +.....+.+++.|+|.++.+ +++++.+|.|+|+..+.. .|.. ........++++.+|.|++.
T Consensus 295 ~~p~-~~~~~~~~~~v~l~W~~p~~-~~~~i~~Y~v~~~~~~~~-----------~~~~~~~~~~~~~~~~i~~L~~~t~ 361 (389)
T 2jll_A 295 SPPS-IHGQPSSGKSFKLSITKQDD-GGAPILEYIVKYRSKDKE-----------DQWLEKKVQGNKDHIILEHLQWTMG 361 (389)
T ss_dssp CCCC-EEEEEETTTEEEEEECCCCC-CSSCCCEEEEEEEC----------------CCBCCEECTTCCEEEECSCCTTCE
T ss_pred CCCc-cccccCcCCEEEEEEECCCC-CCCcccEEEEEEEeCCCC-----------cceeEeeccCCcceEEeCCcCCCCE
Confidence 7774 66666789999999998876 788999999999874433 4542 22445667899999999999
Q ss_pred EEEEEEEEcCCCCCCCCCC
Q psy574 478 YTFLVRALNSHGLSAPSPL 496 (977)
Q Consensus 478 Y~~~V~a~n~~G~s~~S~~ 496 (977)
|.|+|+|.|..|.|.+|..
T Consensus 362 Y~~~V~A~n~~G~s~~s~~ 380 (389)
T 2jll_A 362 YEVQITAANRLGYSEPTVY 380 (389)
T ss_dssp EEEEEEEEC-CCBCCCEEE
T ss_pred EEEEEEEEcCCcCCCceee
Confidence 9999999999999988754
No 24
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Probab=100.00 E-value=8.9e-34 Score=307.09 Aligned_cols=276 Identities=25% Similarity=0.470 Sum_probs=238.4
Q ss_pred ccccccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEec-CcEEEEcCCCCCCCeEEEEEE
Q psy574 2 SLLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD-GTNLAIQDSRKTDDGRYQCVV 80 (977)
Q Consensus 2 a~l~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~-~g~L~I~~v~~~D~G~Y~C~a 80 (977)
++..|.|.+.|.++.+.+|+.++|.|.+ .+.|.+.|.|+|+|..+......++.... ++.|.|.+++.+|+|.|+|.+
T Consensus 2 ~~~pP~~~~~p~~~~~~~G~~v~l~C~~-~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~ 80 (284)
T 2rik_A 2 AMAPPFFDLKPVSVDLALGESGTFKCHV-TGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYA 80 (284)
T ss_dssp CCCCCEEEECCCCEEEETTCCEEEEEEE-ESSSCCEEEEEETTEECCSSSSEEEEEETTEEEEEESSCCGGGCEEEEEEE
T ss_pred CcCCCEEEccccceEecCCCcEEEEEEE-EcCCCCEEEEEECCEECcCCCcEEEEEcCCEEEEEEecCCcccCEEEEEEE
Confidence 4567899999999999999999999999 78899999999999999655555555544 367999999999999999999
Q ss_pred EecCceeeeEeEEEEEEcCCeEEeCCC-ceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCC-ceEEe---ccceEEE
Q psy574 81 KNVAGTRESTDAVLRVLVKPYIIRGPK-DTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED-RMSVL---PSRSLQL 155 (977)
Q Consensus 81 ~n~~g~~~s~~~~l~V~~~P~~~~~p~-~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~-~~~~~---~~~~L~I 155 (977)
.|..|. .+..+.|.|..+|.+...+. ...+.+|+.+.|.|.+.|.|.+.+.|+|++..+... ++.+. ....|.|
T Consensus 81 ~n~~g~-~~~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i 159 (284)
T 2rik_A 81 SNVAGK-DSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEM 159 (284)
T ss_dssp EETTEE-EEEEEEEEEECCCEEEECCCSEEEEETTCCEEEEEEEESSSCCEEEEEETTEECCCSSSEEEEEETTEEEEEE
T ss_pred EECCce-EEEEEEEEccCCCcccccCCCceEecCCceEEEEEEEeeeCCCEEEEEECCEECcCCCcEEEEEcCCEEEEEE
Confidence 998876 45778999999998877654 457899999999999999999999999999988654 33322 3467999
Q ss_pred ccCccCCCeEEEEEEEeCCeeEEEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCC
Q psy574 156 SDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGD 235 (977)
Q Consensus 156 ~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~ 235 (977)
.+++.+|+|.|+|.|.|..|.....+.|.|..+|.+...+....+.+|+.++|.|.+.|.|.+.+.|++++..+.
T Consensus 160 ~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~----- 234 (284)
T 2rik_A 160 YNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELR----- 234 (284)
T ss_dssp CSCCGGGCEEEEEEEECSSCEEEEEEEEEEECCCBCCSCCCCEEECTTCCEEEEEECBSSSCCEEEEEETTEEEC-----
T ss_pred CCCCcccCEEEEEEEEcCCCceeEEEEEEEecCCcceeCCCcceecCCCeEEEEEEEEecCCCEEEEEECCEECc-----
Confidence 999999999999999999999999999999999999888888899999999999999999999999999998774
Q ss_pred ccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEE
Q psy574 236 RVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVS 286 (977)
Q Consensus 236 ~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~ 286 (977)
...++.+... ++...|.|.+++.+|+|.|+ |.|.|..|.....+.|.|+
T Consensus 235 ~~~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~-C~a~N~~G~~~~~~~l~V~ 283 (284)
T 2rik_A 235 SGKKYKIMSE-NFLTSIHILNVDSADIGEYQ-CKASNDVGSYTCVGSITLK 283 (284)
T ss_dssp BTTTEEEEEE-TTEEEEEECSCCGGGCEEEE-EEEEETTEEEEEEEEEEEC
T ss_pred CCCCEEEEEc-CCEEEEEEcCCCcccCEEEE-EEEEeCCCceeEEEEEEEc
Confidence 3345555443 34468999999999999999 9999999999999988886
No 25
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}
Probab=100.00 E-value=7.2e-35 Score=342.24 Aligned_cols=332 Identities=14% Similarity=0.116 Sum_probs=238.9
Q ss_pred eEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCc--EEEEcCCCCCCCeEEEEEEEecCceeeeEeE
Q psy574 15 QRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGT--NLAIQDSRKTDDGRYQCVVKNVAGTRESTDA 92 (977)
Q Consensus 15 ~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g--~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~~ 92 (977)
.....|+.++|.|.+ .|.|.|.|.|++++..+.... ....+ ...+..++.+|+|.|+|.|.|..|...+..+
T Consensus 149 ~~~~~~~~~~L~C~a-~G~P~P~i~W~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~~~~~ 222 (527)
T 3qs9_E 149 YFRKMENQDALVCIS-ESVPEPIVEWVLCDSQGESCK-----EESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLF 222 (527)
T ss_dssp EEEECSSSSCEEEEE-EESSCCEEEEEEC------------------CEEECCSEECCCCSSCEEEEEECSSCEEEEECE
T ss_pred cEEecCCceEEEEEE-ceecCCeEEEEECCCCCcccc-----ccCCcEEEEeeeeccccCCEEEEEEEEeCCCcccceEE
Confidence 455678889999999 899999999999887763111 11111 1223345689999999999999998777668
Q ss_pred EEEEEcCCeEEeCCCceEEeCCCeEEEEEEec-ccCceEEEEEECCeeCCCCceE----------EeccceEEEccCccC
Q psy574 93 VLRVLVKPYIIRGPKDTTVSASSIIVFECSVG-GDAVLTVHWKRLGSAMPEDRMS----------VLPSRSLQLSDVRLE 161 (977)
Q Consensus 93 ~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~-g~p~~~i~W~k~~~~l~~~~~~----------~~~~~~L~I~~v~~~ 161 (977)
.|.|..+|.+ .|.+..+.+|+++.|.|.+. |.|.+.|.|+|++..+...... .....+|.|.+++.+
T Consensus 223 ~l~V~~~p~~--~p~~~~v~~G~~v~L~C~~~~g~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~ 300 (527)
T 3qs9_E 223 TIDLNQTPQT--TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARN 300 (527)
T ss_dssp EEESSSCCCC--SCCEEEECTTSCEEEEEEEEESSSCCCEEEECSSSCCCGGGEEEEEEEETTTEEEEEEEEEESSCCGG
T ss_pred EEEEeccCcc--CCCceEEeCCCeEEEEEEEccCCCCeEEEEEECCEECCCCceeeeeeeccCcceeeEEEEEEccCCcc
Confidence 8888888776 67788999999999999996 8999999999999887653211 123356999999999
Q ss_pred CCeEEEEEEEeCCeeEEEEEEEEEeeCCeEEecCC--CcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCcccc
Q psy574 162 DAGEYVCEAENAVGKISASATLTVQMAPIVRERPS--DLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDN 239 (977)
Q Consensus 162 D~G~Y~C~a~n~~g~~~~~~~L~V~~~p~~~~~p~--~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~ 239 (977)
|+|.|+|.|.|. .++.+.|.|..+|.+...+. ...+.+|+.+.|.|.+.|.|.|.|.|+|+|..+.... +
T Consensus 301 DsG~Y~C~a~N~---~~~~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~k~g~~l~~~~-----~ 372 (527)
T 3qs9_E 301 DTGYYTCSSSKH---PSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQ-----K 372 (527)
T ss_dssp GCEEEEEEETTE---EEEEEEEEEC--CEEECCCSCCEECCCTTCCCCEEEEEEEESCCEEEEEETTEEEECBC-----C
T ss_pred cCeEEEEEEEeC---CCceEEEEEEccCccccccCcccEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCc-----c
Confidence 999999999987 67888999998888776653 3567889999999999999999999999998874321 1
Q ss_pred EEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEECCCCCCCCeEEeCCCceeecCCCcEEEEEEEcc
Q psy574 240 IQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG 319 (977)
Q Consensus 240 ~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~~~~~~pp~i~~~p~~~~v~~g~~~~L~C~~~~ 319 (977)
+. .+...|.|.+++.+|+|.|+ |.|.|..|.....+.|.|.. +|.+...+. ...|.|.+.+
T Consensus 373 ~~-----~~~~~L~I~~v~~~D~G~Yt-C~A~N~~g~~~~~~~L~V~~-----~P~i~~~~~--------~~~l~C~a~g 433 (527)
T 3qs9_E 373 GL-----DNGYSISKFCNHKHQPGEYI-FHAENDDAQFTKMFTLNIRR-----KPQVLAEAS--------ASQASCFSDG 433 (527)
T ss_dssp BC-----SSSSEEEEECCCTTCCSCEE-EEEEETTEEEEEEEEEC--C-----CCEEEECCC--------CE---EEEEC
T ss_pred cc-----cCCcEEEEecCCcccCEEEE-EEEEeCCCcEEEEEEEEEec-----CCeEEEeCC--------CCEEEEEEEE
Confidence 11 12238999999999999999 99999999999999999987 777766543 2357999999
Q ss_pred --CceEEEEECCEEcCCCCc-------------EEEecC-ceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEECC
Q psy574 320 --EGSVQWWRGEREVGSGPR-------------VNVTGD-GSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESP 381 (977)
Q Consensus 320 --~p~i~W~~~g~~l~~~~~-------------~~~~~~-~sl~I~~v~~~d~G~Y~C~a~n~~G~~~~s~~l~v~~~ 381 (977)
.|.|.|++++........ ...... ....+.-....|.|.|+|.|.|..|..+..+.|.|..+
T Consensus 434 ~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~d~G~Y~C~A~N~~G~~~~~~~L~V~~p 511 (527)
T 3qs9_E 434 YPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAYNSLGTSCETILLNSPGP 511 (527)
T ss_dssp SSCCEEEEECCC-----CCCCCCCCEEEC---------CEEEEECCCCCSSCSCEEEEEEECSSCEEEEEEEC-----
T ss_pred EcCCeEEEEECCCCcCCCccccccccceeccccccCCceEEEEEEEEEEcCCCEEEEEEEEeCCCCceeEEEEecCCC
Confidence 678999988664421100 000010 11223223345999999999999999999998877643
No 26
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4
Probab=100.00 E-value=2.1e-34 Score=334.19 Aligned_cols=331 Identities=16% Similarity=0.192 Sum_probs=242.6
Q ss_pred ceecccceEEeCCCcEEEEEECCCCCCCC---eEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecC
Q psy574 8 FRVQPKSQRVAAGDTALLECGPPRGHPEP---TLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVA 84 (977)
Q Consensus 8 ~~~~p~~~~v~~G~~v~L~C~~~~g~P~~---~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~ 84 (977)
+...|.+..+.+|++++|.|.+ .+.|.+ .|.|+|||+.+.... +.....++.|.|.+++.+|+|.|+|.|.|..
T Consensus 89 ~~~~~~~~~v~~G~~v~L~C~~-~g~~~~~~~~v~W~k~g~~l~~~~--~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~ 165 (450)
T 1z7z_I 89 VELAPLPSWQPVGKNLTLRCQV-EGGAPRANLTVVLLRGEKELKREP--AVGEPAEVTTTVLVRRDHHGANFSCRTELDL 165 (450)
T ss_dssp EEECCCCSEECTTSEEEEEEEE-ECCBCGGGEEEEEEETTEEEEEEE--CCTTTEEEEEEEECCSSCSSCEEEEEEEEEC
T ss_pred ceecCCCceEeeCCeEEEEEEe-cCCCCCcCcEEEEeeCCEEeeccc--ccccccceEEEEEeeccccCceEEEEEEccc
Confidence 3367777889999999999999 677776 999999999985322 1111124589999999999999999999987
Q ss_pred cee-------eeEeEEEEEEcC----CeEEeCCCceEEeCCCeEEEEEEeccc-C--ceEEEEEECCeeCCCCceEEecc
Q psy574 85 GTR-------ESTDAVLRVLVK----PYIIRGPKDTTVSASSIIVFECSVGGD-A--VLTVHWKRLGSAMPEDRMSVLPS 150 (977)
Q Consensus 85 g~~-------~s~~~~l~V~~~----P~~~~~p~~~~v~~G~~v~l~C~v~g~-p--~~~i~W~k~~~~l~~~~~~~~~~ 150 (977)
|.. .+....|.|... |.+.. ...+.+|+.+.|.|.+.|. | .+.+.|++++..+.. +.....+
T Consensus 166 g~~~~~~~~~~s~~~~l~v~~~~~~~p~~~~---~~~v~~G~~v~l~C~~~g~~P~~~~~~~W~~~~~~~~~-~~~~~~~ 241 (450)
T 1z7z_I 166 RPQGLELFENTSAPYQLQTFVLPATPPQLVS---PRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNP-TVTYGND 241 (450)
T ss_dssp GGGTSCEEEEECCCEECEECCCCSSCCEEEC---CSEEETTSEEEEEEEEESCTTGGGCEEEEEETTEECCC-EEEEETT
T ss_pred CCCCceEEeeccCccceeeeccCCCCCEecC---ceeEEeCCcEEEEEEeeCCCCCCceEEEEeCCCEeCCc-eEEecCC
Confidence 632 124445666533 22221 1688999999999999888 7 789999999998876 4433333
Q ss_pred ceEEEc---cCccCCCe--EEEEEEEeCCeeEEEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEc
Q psy574 151 RSLQLS---DVRLEDAG--EYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLE 225 (977)
Q Consensus 151 ~~L~I~---~v~~~D~G--~Y~C~a~n~~g~~~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~ 225 (977)
.+.+. +++.+|+| .|+|.|.|..|.....+.|.|...|.....+....+.+|+.++|.|.+. |.+.+.| +
T Consensus 242 -~~~~~~~~~v~~~d~G~~~Y~C~a~n~~g~~~~~~~l~V~~~~~p~i~~~~~~v~~G~~v~l~C~~~--p~p~i~W--~ 316 (450)
T 1z7z_I 242 -SFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSEGTEVTVKCEAH--PRAKVTL--N 316 (450)
T ss_dssp -EEEEEEEEECCGGGCEEEEEEEEEEETTEEEEEEEEEEEECCCCCEEEESCSEEETTCEEEEEEEC-------------
T ss_pred -ceeEEEEEEeEhhhCCcEEEEEEEccCCccEEEEEEEEEecCCCCeEecCCeeEeCCCcEEEEEecC--CCCEeEE--C
Confidence 22222 77999999 9999999999998889999998733333334456899999999999998 8889999 6
Q ss_pred CeeeeecCCCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCC-c---eeEEEEEEEECCCCCCCCeEEeCC-
Q psy574 226 GNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAG-S---DLARASLTVSGPDPNPPPVILFGP- 300 (977)
Q Consensus 226 g~~~~~~~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g-~---~~~~~~l~V~~~~~~~pp~i~~~p- 300 (977)
|..+.. . +....|.|.++..+|+|.|+ |.|.|..+ . ....+.|.|.. +|.+...+
T Consensus 317 g~~~~~-~-------------~~~~~L~i~~~~~~d~G~Y~-C~a~n~~~g~~~~~~~~~~l~V~~-----~P~~~~~~~ 376 (450)
T 1z7z_I 317 GVPAQP-L-------------GPRAQLLLKATPEDNGRSFS-CSATLEVAGQLIHKNQTRELRVLY-----GPRLDERDC 376 (450)
T ss_dssp ---------------------CCCCCEEEECCGGGTTCEEE-EEEEEEETTEEEEEEEEEECEEEE-----EEECCSTTS
T ss_pred CEEcCC-C-------------CceEEEEEecCcccCCceEE-EEEEcCCCCcccccceeEEEEEec-----CCceeeccC
Confidence 765411 0 12238999999999999999 99997665 3 34667888877 55555443
Q ss_pred -CceeecCCCcEEEEEEEcc--CceEEEEECCEEcCCCCcEEEecCceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEE
Q psy574 301 -ANQTLPLRSEARLRCQVRG--EGSVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLR 377 (977)
Q Consensus 301 -~~~~v~~g~~~~L~C~~~~--~p~i~W~~~g~~l~~~~~~~~~~~~sl~I~~v~~~d~G~Y~C~a~n~~G~~~~s~~l~ 377 (977)
.+..+..|+.+.|.|.+.| .|.+.|+++|..+... +.+. .+...|+|.|+|.|.|..|..+.++.|.
T Consensus 377 p~~~~~~~g~~~~l~C~~~g~P~p~i~W~~~g~~~~~~--------g~~~--~v~~~d~G~Y~C~a~N~~G~~~~~~~l~ 446 (450)
T 1z7z_I 377 PGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPI--------GESV--TVTRDLEGTYLCRARSTQGEVTREVTVN 446 (450)
T ss_dssp CSEEEEETTCEECCCCCCEEESCCEEEEEETTTEECCT--------TSCE--ECCGGGCEEEEEEEEETTEEEEEEEEEE
T ss_pred CCceeEcCCCeEEEEEecccCCCCcEEEEECCcccCCC--------CCeE--eEehhhCeEEEEEEEeCCCceeEEEEEE
Confidence 6778999999999999998 7799999999744322 2222 5778899999999999999999999999
Q ss_pred EEC
Q psy574 378 FES 380 (977)
Q Consensus 378 v~~ 380 (977)
|..
T Consensus 447 V~~ 449 (450)
T 1z7z_I 447 VLS 449 (450)
T ss_dssp EEC
T ss_pred EEc
Confidence 874
No 27
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E
Probab=100.00 E-value=7.8e-35 Score=327.56 Aligned_cols=318 Identities=14% Similarity=0.161 Sum_probs=249.2
Q ss_pred ceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEee------------cCCCceEEEec------CcEEEEcCCCCCCCeE
Q psy574 14 SQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPID------------FENSKRLRLVD------GTNLAIQDSRKTDDGR 75 (977)
Q Consensus 14 ~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~------------~~~~~r~~~~~------~g~L~I~~v~~~D~G~ 75 (977)
.+.+.+|++++|.|.+ .+.|.+.|.|+|++..+. .....|+.+.. +.+|.|.+++.+|+|.
T Consensus 3 ~v~~~~G~~v~L~C~~-~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~ 81 (363)
T 1wio_A 3 VVLGKKGDTVELTCTA-SQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDT 81 (363)
T ss_dssp EEEEETTSCEEECCCC-TTCSSCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCHHHHHTTCCCEEECSCCGGGCEE
T ss_pred eEEEeCCCeEEEEEEe-cCCCceEEEEEeCCccceeccCccEEecCCcccccceeeeeccccCCeEEEEECCCCHHHCEE
Confidence 4689999999999998 689999999999986421 12245666542 4579999999999999
Q ss_pred EEEEEEecCceeeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceEEeccceEEE
Q psy574 76 YQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQL 155 (977)
Q Consensus 76 Y~C~a~n~~g~~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~~~~~L~I 155 (977)
|+|.|.|.. ..+.|.|.. +...|. ..+.+|+++.|.|.+.+.|.+.+.|+|++..+ ......|.|
T Consensus 82 Y~C~~~n~~-----~~~~l~V~~---~~~~~~-~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~------~~~~~~L~i 146 (363)
T 1wio_A 82 YICEVEDQK-----EEVQLLVFG---LTANSD-THLLQGQSLTLTLESPPGSSPSVQCRSPRGKN------IQGGKTLSV 146 (363)
T ss_dssp EEEEETTEE-----EEEEEEEEE---EEESSC-SSEESBSCEEEEEECCTTCCCCEEEECSSSCE------EEESSEEEE
T ss_pred EEEEEEECC-----CcEEEEEEe---CCCCCc-eEEecCCCEEEEEEcCCCCCCeEEEEcCCCcc------cccceEEEE
Confidence 999998753 356777764 333443 46789999999999988999999999997654 236688999
Q ss_pred ccCccCCCeEEEEEEEeCCeeEEEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEEec-----CCCCeEEEEEcCeeee
Q psy574 156 SDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEG-----SPPPSTFWMLEGNRSL 230 (977)
Q Consensus 156 ~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g-----~p~~~i~W~~~g~~~~ 230 (977)
.+++.+|+|.|+|.|.|..+.....+.|.|..+|... ....+.+|+.++|.|.+.+ .|.+.+.|+++|..+.
T Consensus 147 ~~v~~~d~G~Y~C~a~~~~~~~~~~~~l~v~~~p~~~---~~~~~~~G~~v~l~C~~~~~~~~~~P~p~i~W~~~g~~~~ 223 (363)
T 1wio_A 147 SQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKAS---SIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSS 223 (363)
T ss_dssp CSBCGGGCEECEEEEEETTEEEEECCEECEECCSCSE---EEEEEETBCCEEEECCCCCCCCSSCEEEEEEEEESSCCCC
T ss_pred eeCChhcCCEEEEEEecCCCeEEEEEEEEEecCCCCC---CceEEecCCEEEEEEEEecccccCCCceeEEEecCCCCcc
Confidence 9999999999999999998888888888888666533 4557889999999998877 7788999999997653
Q ss_pred ecC---CCccccEEEEEc---------cCCceEEEEeecccCCCCeEEEEEEEcC--CCceeEEEEEEEECCCCCCCCeE
Q psy574 231 IYP---GDRVDNIQAEIT---------SDGMNLLKIQNVSRTAAPLIILCLGVNA--AGSDLARASLTVSGPDPNPPPVI 296 (977)
Q Consensus 231 ~~~---~~~~~~~~~~~~---------~~g~s~L~I~~v~~~d~G~Y~~C~a~n~--~g~~~~~~~l~V~~~~~~~pp~i 296 (977)
... .....++.+... .++...|.|.++..+|+|.|+ |.|.|. .|.....+.|.|...
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~-C~a~n~~~~g~~~~~~~l~V~~v-------- 294 (363)
T 1wio_A 224 KSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGN-LTLALEAKTGKLHQEVNLVVMRA-------- 294 (363)
T ss_dssp CCEEEEEECSSCEEEEEEECSSCCBCCSSSSCEEEESSBCGGGCEEEE-EEECBTTTTCCEEEEEEEEEEEE--------
T ss_pred ceEEEEEecCCeeeccccccchhhhcccCCceEEEEccCCcCcCcEEE-EEEEEhhhcCeEEEEEeEEEEEe--------
Confidence 200 000334444321 123459999999999999999 999999 998888888888731
Q ss_pred EeCCCceeecCCCcEEEEEEEcc--Cce--EEEEECCEEcCCCCcEEEecCceEEEeccCCCCCeEEEEEEEcCCCceEE
Q psy574 297 LFGPANQTLPLRSEARLRCQVRG--EGS--VQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASW 372 (977)
Q Consensus 297 ~~~p~~~~v~~g~~~~L~C~~~~--~p~--i~W~~~g~~l~~~~~~~~~~~~sl~I~~v~~~d~G~Y~C~a~n~~G~~~~ 372 (977)
.|+.+.|.|.+.+ .|. +.|++++..+.. .+.|.|.++...|+|.|+|.|.|. |....
T Consensus 295 ----------~g~~~~l~C~~~g~p~p~~~i~W~~~~~~~~~--------~~~l~i~~v~~~d~G~Y~C~a~~~-~~~~~ 355 (363)
T 1wio_A 295 ----------TQLQKNLTCEVWGPTSPKLMLSLKLENKEAKV--------SKREKAVWVLNPEAGMWQCLLSDS-GQVLL 355 (363)
T ss_dssp ----------CCCSSSEEEEEESSCCTTCCEEEECSSSSCSE--------EESSSEEEESSCCSEEEEEEECSS-SSCCE
T ss_pred ----------cCCCeeEEEEEccccCCCccEEEEeCCCceee--------eeeeeeeeeccccceeEEEEEecC-CeEEE
Confidence 1888999999999 566 999999976642 345788999999999999999964 56666
Q ss_pred EEEEEE
Q psy574 373 SASLRF 378 (977)
Q Consensus 373 s~~l~v 378 (977)
+..+.|
T Consensus 356 ~~~~~V 361 (363)
T 1wio_A 356 ESNIKV 361 (363)
T ss_dssp EEEEEE
T ss_pred ecceEe
Confidence 666665
No 28
>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens}
Probab=100.00 E-value=5.3e-36 Score=360.25 Aligned_cols=534 Identities=16% Similarity=0.158 Sum_probs=346.2
Q ss_pred EeCCCceEEeCCCeEEEEEEec-------ccCceEEEEEECCeeCCCCceEEe--ccceEEEccCccCCCeEEEEEEEeC
Q psy574 103 IRGPKDTTVSASSIIVFECSVG-------GDAVLTVHWKRLGSAMPEDRMSVL--PSRSLQLSDVRLEDAGEYVCEAENA 173 (977)
Q Consensus 103 ~~~p~~~~v~~G~~v~l~C~v~-------g~p~~~i~W~k~~~~l~~~~~~~~--~~~~L~I~~v~~~D~G~Y~C~a~n~ 173 (977)
...|.+..+.+|++++|.|.+. +.+.+.|.|++++..++...+.+. ....|+|.++...|.+ |+|.+...
T Consensus 7 ~i~p~~~~v~~G~~v~l~C~~~~~~~~~~~~~~~~i~W~~~~~~i~~~~~~~~~~~~~~l~i~~~~~~~~~-y~C~~~~~ 85 (589)
T 3l5h_A 7 YISPESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASSVTFTDIASLNIQ-LTCNILTF 85 (589)
T ss_dssp CCSCSCCCCCSSSCCCCCC-CCTTTTTTTTCCTTTCCCBCSSSBSCGGGCBCCSSSCCBCCCCCCCSSCCC-CCCC-CCT
T ss_pred EEecCCCEEeCCCCEEEEEEEeCccCccccccccceEEEeCCEECChHHccccCCcEeEEEEecCCCccee-eEEecccC
Confidence 3467788899999999999996 667789999999988876554433 2357999999988765 77987642
Q ss_pred Ce--eEEEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCccccEEEE--------
Q psy574 174 VG--KISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAE-------- 243 (977)
Q Consensus 174 ~g--~~~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~-------- 243 (977)
.. .....+.|.|..+| +....|.|...+.....+.|....... ....|.+.
T Consensus 86 ~~~~~~~~~~~l~v~~pP-------------~~P~nl~c~~~~~~~~~~~W~~~~~~~------~~~~y~l~~~~~~~~~ 146 (589)
T 3l5h_A 86 GQLEQNVYGITIISGLPP-------------EKPKNLSCIVNEGKKMRCEWDGGRETH------LETNFTLKSEWATHKF 146 (589)
T ss_dssp TCC-CCCCCCCCCC-CCC-------------CCCEEEEEEEETTSCEEEEEECCSCCS------SCEEEEECCBCSSSBC
T ss_pred CCcccEEEeEEEeccCCC-------------CCCEeeEEEECCCceEEEEECCCCcCC------cCceEEEEEEEcCCCc
Confidence 11 12233445454443 344568888877666677887643210 01111111
Q ss_pred ----EccCCceEEEEe-ecccCCCCeEEEEEEEcCCCceeE-EEEEEEECCCCCCCCeEEeCCCceeec----CCCcEEE
Q psy574 244 ----ITSDGMNLLKIQ-NVSRTAAPLIILCLGVNAAGSDLA-RASLTVSGPDPNPPPVILFGPANQTLP----LRSEARL 313 (977)
Q Consensus 244 ----~~~~g~s~L~I~-~v~~~d~G~Y~~C~a~n~~g~~~~-~~~l~V~~~~~~~pp~i~~~p~~~~v~----~g~~~~L 313 (977)
....+.....|. ++.......|. |.|.|..|.... ...+.+... ....+|.+..+. ....+.|
T Consensus 147 ~~c~~~~~~~~~c~~~~~l~~~~~Y~~~-v~a~n~~G~~~s~~~~~~~~~~------~~p~pP~~~~~~~~~~~~~~v~l 219 (589)
T 3l5h_A 147 ADCKAKRDTPTSCTVDYSTVYFVNIEVW-VEAENALGKVTSDHINFDPVYK------VKPNPPHNLSVINSEELSSILKL 219 (589)
T ss_dssp CCEECBTTBSSCCBCCSCCCSSSCEEEC-EEEEESSCCBCCCCEEECGGGS------EECCCCCSCEEECTTTCTTCEEE
T ss_pred ccCCCCCCCcEEEEECCCCchheeEEEE-EEEEeCCCCcccccEEEccccE------EEcCCCceEEEEecCCCCCeEEE
Confidence 011112234444 34444556677 899999987532 222222211 112234444441 2345666
Q ss_pred EEEEcc---Cc----eEEEEECCEEcCCCC-c-EEEecCceEEEeccCCCCCeEEEEEEEcCCCceEE---EEEEEEECC
Q psy574 314 RCQVRG---EG----SVQWWRGEREVGSGP-R-VNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASW---SASLRFESP 381 (977)
Q Consensus 314 ~C~~~~---~p----~i~W~~~g~~l~~~~-~-~~~~~~~sl~I~~v~~~d~G~Y~C~a~n~~G~~~~---s~~l~v~~~ 381 (977)
.+.... .+ .|.|...+....... . ........+.|.++.+...+.|++.|.|..|.+.+ +..+.+...
T Consensus 220 ~W~~p~~~~~~~~~Y~v~~~~~~~~~w~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~g~~S~~S~~~~~~T~ 299 (589)
T 3l5h_A 220 TWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITY 299 (589)
T ss_dssp ECCCCGGGGTSCEEEEEEEEETTCSCCBCCCTTSSCSCCSEEEECSCCSSCCEEEEEEEEESSSCSCCCCCCCCBCCCCC
T ss_pred EeCCCCCCCeeeEEEEEEECCCCCCCcEEEccccCcCceeEEEECCCCCCCEEEEEEEEEeCCCCCccCCCCCccccccC
Confidence 665433 11 344544432110000 0 00012346889999999999999999998886533 222222211
Q ss_pred CCCCCcccCCCCCCCCC-CCCCCCeEE----eeCCCceEEEEEcCC-CCCCcccceEEEEEeecCCCCCCCCCCCCcccE
Q psy574 382 TNPNIGFFRAPEPSTYP-GPPTKPTLV----NQTANGLTLAWSRNN-QIGSSSLLGYQVEMYSRPLPSSSPSGDTATATW 455 (977)
Q Consensus 382 ~~~~~~~~~~~~~~~~p-~~P~~~~v~----~~~~~sv~lsW~~p~-~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w 455 (977)
...| .+|..+... ..+.+++.|+|.++. ...++.+.+|.|+++..... |
T Consensus 300 -------------~~~P~~~p~~~~~v~~~~~~~~~~v~l~W~p~~~~~~~g~i~~Y~v~~~~~~~~------------~ 354 (589)
T 3l5h_A 300 -------------EDRPSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKSH------------L 354 (589)
T ss_dssp -------------CCCCCSCCCEEEECCSCSSTTSCCEEEEECCCCTTTSSSCCCEEEEEECCTTSC------------C
T ss_pred -------------ccCCCCCCcEEEEeecCcCCCcceEEEEEeeCCchhccCceeeEEEEEecCCCC------------c
Confidence 1233 456544332 346789999999743 34778999999998654332 2
Q ss_pred EEeceecCcCeEEEEccCCCCeEEEEEEEEcCCCCCCCCCCCceEEeeccccccccccCCcceeecCCCCCCCcchHHHH
Q psy574 456 VRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRA 535 (977)
Q Consensus 456 ~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~G~s~~S~~s~~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~g~~~~~~ 535 (977)
.. .......+++ |.+++.|.|+|+|.|..|.|.++..... . .+.+
T Consensus 355 ~~--~~~~~~~~~~--l~~~~~Y~~~V~A~n~~G~~~~s~~~~~--~-~~~~---------------------------- 399 (589)
T 3l5h_A 355 QN--YTVNATKLTV--NLTNDRYLATLTVRNLVGKSDAAVLTIP--A-CDFQ---------------------------- 399 (589)
T ss_dssp CB--CCCSSSCCEE--CCCSSCCCEEEEEEBTTBCCCCCCCCCC--C-TTCC----------------------------
T ss_pred ee--eccCCceEEE--EeCCCCEEEEEEEEeCCccCCCeEEEee--c-cccc----------------------------
Confidence 22 1233344444 8899999999999999999987753221 1 0001
Q ss_pred hhcccccCCceEEEEEeeEeCCCeEEEEEEecCCCccceEEEEEEecCCCCCceEEEE-eecCccceEEECCCCCCcEEE
Q psy574 536 RQHLQEGGGSLIELTEVKPMTSTSVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTV-LHAGEASGFLVTGLAHYSRYE 614 (977)
Q Consensus 536 ~~~l~~~~~~~~~~l~~~~~~~tsv~lsW~~p~~~~i~~Y~v~y~~~~~~~~~~~~~~-~~~~~~~~~~i~~L~p~t~Y~ 614 (977)
.+.++.++++... .+++.|+|++|.. .+.+|.|+|+..+....-..... ........+.+.+|+|++.|.
T Consensus 400 -------~~~p~~~l~~~~~-~~si~l~W~~p~~-~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~ 470 (589)
T 3l5h_A 400 -------ATHPVMDLKAFPK-DNMLWVEWTTPRE-SVKKYILEWCVLSDKAPCITDWQQEDGTVHRTYLRGNLAESKCYL 470 (589)
T ss_dssp -------CCSCCCSCEEEEC-SSSEEEECCCCSS-CCSCBCCEEEEECSSSCCCEEECCBCSSCCEEECCSCCCSSSEEE
T ss_pred -------CCCCcceEEEEEC-CCeEEEEEECCCC-CccEEEEEEEECCCCCCCccCcEEeeCCcceEEehhccccCcEEE
Confidence 0111234555554 6899999999954 79999999998875322111111 122344567779999999999
Q ss_pred EEEEEeecceeCCCCCceEEeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCcceEEEEe
Q psy574 615 FFLVPFFGSVDGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTV 694 (977)
Q Consensus 615 ~~V~a~n~~g~g~~s~~~~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~~~~~~~~ 694 (977)
|+|+|.|..|.|..+ .+.+.|.+.+|..+| ++++...+.+++.|+|++|+....+|.|.+|.|+|+..+.... ...+
T Consensus 471 ~~V~A~~~~g~g~~~-~~~~~t~~~~P~~pp-~l~~~~~~~~sv~l~W~~~~~~~~~g~i~~Y~v~~~~~~~~~~-~~~~ 547 (589)
T 3l5h_A 471 ITVTPVYADGPGSPE-SIKAYLKQAPPSKGP-TVRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTIFYRTIIGNET-AVNV 547 (589)
T ss_dssp EEECBEETTEECCCE-EEEEESSCCCCSSCC-CCCEECCCSSCBEEBCCCCCHHHHCSCEEEEEECCBCSSCCCC-CEEE
T ss_pred EEEEEEeCCcccCCE-EEEEEeccCCCCCCC-eEEEeecccceEEEEecCCCHHHcCccceeEEEEEEeCCCCeE-EEEe
Confidence 999999999999775 477889999998666 6888888899999999997667889999999999988653322 4566
Q ss_pred cCCcCeEEecCCCCCceEEEEEEEEcCCCcCCCCCceEEeec
Q psy574 695 SASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLT 736 (977)
Q Consensus 695 ~~~~~~~~l~~L~p~t~Y~~~V~A~~~~G~g~~S~~~~~~t~ 736 (977)
.++.++++|.+|+|++.|.|+|+|.|.+| |++|.++.|+|.
T Consensus 548 ~~~~~~~~~~~L~p~t~Y~~~V~A~n~~G-~~~S~~~~~~T~ 588 (589)
T 3l5h_A 548 DSSHTEYTLSSLTSDTLYMVRMAAYTDEG-GKDGPEFTFTTP 588 (589)
T ss_dssp CTTCCBCCBCSCCSSCCEECCEEEEETTE-EEECCCCEECCC
T ss_pred CCcccEEEecCCCCCCEEEEEEEEEeCCC-CCCCCCeEEecC
Confidence 78899999999999999999999999999 999999999875
No 29
>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1
Probab=100.00 E-value=8.3e-35 Score=336.33 Aligned_cols=366 Identities=18% Similarity=0.239 Sum_probs=259.1
Q ss_pred cceecccceEEeCCCcEEEEEECCCCCCC----CeEEEEeCC--EEee----------cCCCceEEEec---CcEEEEcC
Q psy574 7 EFRVQPKSQRVAAGDTALLECGPPRGHPE----PTLVWKKNG--HPID----------FENSKRLRLVD---GTNLAIQD 67 (977)
Q Consensus 7 ~~~~~p~~~~v~~G~~v~L~C~~~~g~P~----~~v~W~k~g--~~l~----------~~~~~r~~~~~---~g~L~I~~ 67 (977)
.|...|.++.+.+|++++|.|.+ .+.|. +.|.|+|++ ..+. .....|+.+.. ..+|.|.+
T Consensus 3 ~v~~~p~~~~v~~G~~v~L~C~~-~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~ 81 (438)
T 1qgc_4 3 VLTQSPASLAVSLGQRATISCRA-SESVDSSGHSFMHWYQQKPGQPPKLLIYRASNLESGIPDRFSGSGSRTDFTLTIDP 81 (438)
T ss_dssp CEEEECSEEEECTTSCEEEEEEE-SSCCEETTEECEEEEEECTTSCCEEEESSSSCBCSSCCTTEEEEEETTEEEEEESS
T ss_pred ceEecCCeEEeeCCCCEEEEEec-CCCcccCCcceEEEEEECCCCCcEEEEEECcccCCCccCcEEEEccCCcEEEEeCC
Confidence 45667889999999999999998 67765 489999963 3221 12235666553 24799999
Q ss_pred CCCCCCeEEEEEEEecCceeeeEeEEEEEEc---CCeEEeCCCceEEeCCCeEEEEEEecc-cCce-EEEEEECCeeCCC
Q psy574 68 SRKTDDGRYQCVVKNVAGTRESTDAVLRVLV---KPYIIRGPKDTTVSASSIIVFECSVGG-DAVL-TVHWKRLGSAMPE 142 (977)
Q Consensus 68 v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V~~---~P~~~~~p~~~~v~~G~~v~l~C~v~g-~p~~-~i~W~k~~~~l~~ 142 (977)
++.+|+|.|+|.|.|..+...+..+.|.|.. +|.+...+....+.+|+.+.|.|.+.| .|.+ .|.|+|++..+..
T Consensus 82 v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~ 161 (438)
T 1qgc_4 82 VEADDVATYYCQQSNEVPLTFGAGTKLDLKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQN 161 (438)
T ss_dssp CCGGGCEEEEEEECSSTTCCBCCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEETTEEECT
T ss_pred CcCcCCeeEEEEEecCCCccccCceeEEecCCCCCCEEEecCCChhhccCCceEEEEEEccccCCCcEEEEEECCEEcCC
Confidence 9999999999999998765444556777763 666665444444457889999999976 6776 9999999988865
Q ss_pred CceE---E--------eccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEE
Q psy574 143 DRMS---V--------LPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCG 211 (977)
Q Consensus 143 ~~~~---~--------~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~ 211 (977)
.... . ...+.|.|.++..+|+|.|+|.|.|..+.......+.+..++.....|....+.+|+.++|.|.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~ 241 (438)
T 1qgc_4 162 GVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNECEVMLVESGGGLVKPGGSLKLSCT 241 (438)
T ss_dssp TEEEEEECCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSSCEEEEEETTC-CCEEEEECCEEECTTCCEEEEEE
T ss_pred CceeccccccCCCCcEEEEEEEEEeCcccCCCCeEEEEEEecccCCceecccccccceeEEecCCceEEecCCcEEEEEE
Confidence 5111 1 1134799999999999999999999887643333333323334444567778999999999999
Q ss_pred EecCC--CCeEEEEEc--Ceeeeec------------CCCccccEEEEEcc-CCceEEEEeecccCCCCeEEEEEEEcCC
Q psy574 212 IEGSP--PPSTFWMLE--GNRSLIY------------PGDRVDNIQAEITS-DGMNLLKIQNVSRTAAPLIILCLGVNAA 274 (977)
Q Consensus 212 ~~g~p--~~~i~W~~~--g~~~~~~------------~~~~~~~~~~~~~~-~g~s~L~I~~v~~~d~G~Y~~C~a~n~~ 274 (977)
+.|.| .+.+.|+|+ +..+... .....+++.+.... .+...|.|.+++.+|+|.|+ |.|.|..
T Consensus 242 ~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~-C~a~n~~ 320 (438)
T 1qgc_4 242 ASGFIFNRCAMSWVRQTPEKRLEWVATISSGGTYTYYPDSVKGRFTISRDNAKNTLYLQMSSLRSADTAMYY-CVRREDG 320 (438)
T ss_dssp EESSCGGGSCEEEEEEETTTEEEEEEEECTTSCCEECCGGGTTTEEEEEETTTTEEEEEECSCCGGGCCEEE-EEECCSS
T ss_pred EcccccCCcEEEEEECCCCCCcEEEEEEeecCCceecCcccCCcEEEEeecCCCeEEEEECCCChhhCEEEE-EEEEccC
Confidence 99988 679999997 5433210 01124577766532 23468999999999999999 9999854
Q ss_pred C-----ceeEEEEEEEECCCCCCCCeEEeCCCceeecCCCcEEEEEEEcc---Cc-eEEEEECCEEcCCC--CcEEEe--
Q psy574 275 G-----SDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG---EG-SVQWWRGEREVGSG--PRVNVT-- 341 (977)
Q Consensus 275 g-----~~~~~~~l~V~~~~~~~pp~i~~~p~~~~v~~g~~~~L~C~~~~---~p-~i~W~~~g~~l~~~--~~~~~~-- 341 (977)
+ .....+.|.|..... .+|.+...+....+..|+.++|.|.+.+ .+ .+.|+++|..+... ..+...
T Consensus 321 ~~~~~~~~~~~~~l~V~~~~~-~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~g~~~~~~~~~~~~~~g~ 399 (438)
T 1qgc_4 321 GDEGFAYWGQGTVVTVSAAKT-TPPSVYPLAPGSAAAAASMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDL 399 (438)
T ss_dssp SCCCCCSBCCCEEEEECSSCC-BCCEEEEECCCGGGCCSSEEEEEEEEESCBSSCCEEEEGGGTCCSSEEECCCEEETTE
T ss_pred CCccceeeCCCEEEEEecCCC-CCCeEEEcCcccccccCCcEEEEEEeccccCCCcEEEEecCCCCCceeecCccccCCc
Confidence 4 223446777775322 2444433333445678999999999988 23 89999999876421 222111
Q ss_pred --cCceEEEeccCCCCCeEEEEEEEcCCCceEEEEEE
Q psy574 342 --GDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASL 376 (977)
Q Consensus 342 --~~~sl~I~~v~~~d~G~Y~C~a~n~~G~~~~s~~l 376 (977)
-.+.|.|..+...| |.|+|.|.|..|.......+
T Consensus 400 ~~~~s~L~i~~~~~~d-g~Y~C~a~n~~g~~~~~~~i 435 (438)
T 1qgc_4 400 YTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKI 435 (438)
T ss_dssp EEEEEEEEEEEEHHHH-SCCEEEEEEGGGTEEEEEEC
T ss_pred EEEEEEEEEehhhcCC-ceEEEEEEeCCCCcceeeec
Confidence 11258888888778 99999999999986655443
No 30
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4
Probab=100.00 E-value=6.9e-34 Score=329.88 Aligned_cols=338 Identities=15% Similarity=0.219 Sum_probs=245.9
Q ss_pred cceecccceEEeCCCcEEEEEECCCCCCCCeE-----EEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEE
Q psy574 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTL-----VWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVK 81 (977)
Q Consensus 7 ~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v-----~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~ 81 (977)
++.++|.++.+.+|++++|.|.+ .+ |.+.+ .|+|++..+.. .+ .+.|.|.+++. |+| |+|.|.
T Consensus 1 ~i~~~P~~~~v~~G~~v~L~C~~-~g-p~p~~~~~~~~w~k~~~~~~~---~~-----~~~l~i~~v~~-d~g-Y~C~a~ 68 (450)
T 1z7z_I 1 QTSVSPSKVILPRGGSVLVTCST-SC-DQPMLLGIETPLPKKELLLPG---NN-----RKVYELSNVQE-DSQ-PMCYSN 68 (450)
T ss_dssp CCEEESSEEEEETTEEEEEEEEC-CS-SCCCEEEECSSSCEEECCSST---TT-----EEEEEEEEECS-CBC-CEEEEE
T ss_pred CcccCCCceEEecCCcEEEEEEc-cC-CCcccccccceeeecceEecC---CC-----ceEEEEEeccc-CCe-eEEEEe
Confidence 46789999999999999999999 66 88888 99998876521 12 13789999988 999 999997
Q ss_pred ecCceeeeEeEEEEEEcCCeEE-eCCCceEEeCCCeEEEEEEecccCce---EEEEEECCeeCCCCceE-EeccceEEEc
Q psy574 82 NVAGTRESTDAVLRVLVKPYII-RGPKDTTVSASSIIVFECSVGGDAVL---TVHWKRLGSAMPEDRMS-VLPSRSLQLS 156 (977)
Q Consensus 82 n~~g~~~s~~~~l~V~~~P~~~-~~p~~~~v~~G~~v~l~C~v~g~p~~---~i~W~k~~~~l~~~~~~-~~~~~~L~I~ 156 (977)
+..+ ..+..+.|.|..+|.+. ..+.+..+.+|+++.|.|.+.|.|.+ .|.|+|++..+...... ...++.|.|.
T Consensus 69 ~~~~-~~~~~~~l~V~~~P~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~~v~W~k~g~~l~~~~~~~~~~~~~L~i~ 147 (450)
T 1z7z_I 69 CPDG-QSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEVTTTVL 147 (450)
T ss_dssp ETTE-EEEEECEEEEEBCCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECCTTTEEEEEEEE
T ss_pred CCCC-cceeEEEEEEEeCCCcceecCCCceEeeCCeEEEEEEecCCCCCcCcEEEEeeCCEEeecccccccccceEEEEE
Confidence 5543 45667889999888766 57777899999999999999988877 99999999887532211 1124589999
Q ss_pred cCccCCCeEEEEEEEeCCee--------EEEEEEEEEeeC----CeEEecCCCcEEeeCCeEEEEEEEecC-C--CCeEE
Q psy574 157 DVRLEDAGEYVCEAENAVGK--------ISASATLTVQMA----PIVRERPSDLRLEVGRDAVFLCGIEGS-P--PPSTF 221 (977)
Q Consensus 157 ~v~~~D~G~Y~C~a~n~~g~--------~~~~~~L~V~~~----p~~~~~p~~~~v~~G~~v~L~C~~~g~-p--~~~i~ 221 (977)
++..+|+|.|+|.|.|..|. .+....|.|... |.+.. ...+.+|+.++|.|.+.+. | .+.+.
T Consensus 148 ~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~s~~~~l~v~~~~~~~p~~~~---~~~v~~G~~v~l~C~~~g~~P~~~~~~~ 224 (450)
T 1z7z_I 148 VRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVS---PRVLEVDTQGTVVCSLDGLFPVSEAQVH 224 (450)
T ss_dssp CCSSCSSCEEEEEEEEECGGGTSCEEEEECCCEECEECCCCSSCCEEEC---CSEEETTSEEEEEEEEESCTTGGGCEEE
T ss_pred eeccccCceEEEEEEcccCCCCceEEeeccCccceeeeccCCCCCEecC---ceeEEeCCcEEEEEEeeCCCCCCceEEE
Confidence 99999999999999998653 123445556533 33221 2688999999999999998 7 68999
Q ss_pred EEEcCeeeeecCCCccccEEEEEccCCceEEEEeecccCCCC--eEEEEEEEcCCCceeEEEEEEEECCCCCCCCeEEeC
Q psy574 222 WMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAP--LIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFG 299 (977)
Q Consensus 222 W~~~g~~~~~~~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G--~Y~~C~a~n~~g~~~~~~~l~V~~~~~~~pp~i~~~ 299 (977)
|++++..+.. ++.... ++.......+++.+|+| .|+ |.|.|..|.....+.|.|...+ +|.+...
T Consensus 225 W~~~~~~~~~-------~~~~~~--~~~~~~~~~~v~~~d~G~~~Y~-C~a~n~~g~~~~~~~l~V~~~~---~p~i~~~ 291 (450)
T 1z7z_I 225 LALGDQRLNP-------TVTYGN--DSFSAKASVSVTAEDEGTQRLT-CAVILGNQSQETLQTVTIYSFP---APNVILT 291 (450)
T ss_dssp EEETTEECCC-------EEEEET--TEEEEEEEEECCGGGCEEEEEE-EEEEETTEEEEEEEEEEEECCC---CCEEEES
T ss_pred EeCCCEeCCc-------eEEecC--CceeEEEEEEeEhhhCCcEEEE-EEEccCCccEEEEEEEEEecCC---CCeEecC
Confidence 9999987631 222221 12111112277899999 999 9999999999889999998743 4666543
Q ss_pred CCceeecCCCcEEEEEEEccCceEEEEECCEEcCCCCcEEEecCceEEEeccCCCCCeEEEEEEEcCCC-c---eEEEEE
Q psy574 300 PANQTLPLRSEARLRCQVRGEGSVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHG-S---ASWSAS 375 (977)
Q Consensus 300 p~~~~v~~g~~~~L~C~~~~~p~i~W~~~g~~l~~~~~~~~~~~~sl~I~~v~~~d~G~Y~C~a~n~~G-~---~~~s~~ 375 (977)
...+..|+.+.|.|.+.+.|.+.| +|..+... .....|.|..+...|.|.|+|.|.|..+ . ...++.
T Consensus 292 --~~~v~~G~~v~l~C~~~p~p~i~W--~g~~~~~~-----~~~~~L~i~~~~~~d~G~Y~C~a~n~~~g~~~~~~~~~~ 362 (450)
T 1z7z_I 292 --KPEVSEGTEVTVKCEAHPRAKVTL--NGVPAQPL-----GPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRE 362 (450)
T ss_dssp --CSEEETTCEEEEEEEC-----------------------CCCCCEEEECCGGGTTCEEEEEEEEEETTEEEEEEEEEE
T ss_pred --CeeEeCCCcEEEEEecCCCCEeEE--CCEEcCCC-----CceEEEEEecCcccCCceEEEEEEcCCCCcccccceeEE
Confidence 458899999999999998889999 77766211 1234799999999999999999997665 3 346677
Q ss_pred EEEECCC
Q psy574 376 LRFESPT 382 (977)
Q Consensus 376 l~v~~~~ 382 (977)
|.|..+|
T Consensus 363 l~V~~~P 369 (450)
T 1z7z_I 363 LRVLYGP 369 (450)
T ss_dssp CEEEEEE
T ss_pred EEEecCC
Confidence 7777554
No 31
>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}
Probab=100.00 E-value=1.1e-32 Score=326.17 Aligned_cols=353 Identities=15% Similarity=0.216 Sum_probs=245.4
Q ss_pred cccceecccceEEeCCCcEEEEEECCCCCCC--CeEEEEeCCEEeecCCCce-EEEecC------cEEEEcCCCCCCCeE
Q psy574 5 REEFRVQPKSQRVAAGDTALLECGPPRGHPE--PTLVWKKNGHPIDFENSKR-LRLVDG------TNLAIQDSRKTDDGR 75 (977)
Q Consensus 5 ~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~--~~v~W~k~g~~l~~~~~~r-~~~~~~------g~L~I~~v~~~D~G~ 75 (977)
.|.+.+.|....+.+|+.++|.|.+ .|.|. +.|.|+|||+.+....... .....+ ..|.|.+++.+|+|.
T Consensus 114 ~P~~~~~~~~~~~~~g~~v~l~C~~-~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~ 192 (523)
T 2rcj_C 114 NPTVTLFPPSSEELQANKATLVCLI-SDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRS 192 (523)
T ss_pred CCeEEecCCcccccCCCceEEEEEe-ccccCCceEEEEecCCCCCCCceEeccccccCCCCEEEEEEEEEechhcCCCce
Confidence 4566777777778899999999999 56554 3999999999884321100 001112 369999999999999
Q ss_pred EEEEEEecCceeeeEeEEEE----EEcCCeEEeCCCceEEeCCCeEEEEEEeccc-Cce-EEEEEECCeeCCCC---ceE
Q psy574 76 YQCVVKNVAGTRESTDAVLR----VLVKPYIIRGPKDTTVSASSIIVFECSVGGD-AVL-TVHWKRLGSAMPED---RMS 146 (977)
Q Consensus 76 Y~C~a~n~~g~~~s~~~~l~----V~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~-p~~-~i~W~k~~~~l~~~---~~~ 146 (977)
|+|.|.|..+.... .+.+. +..+|.+...+....+.+|+.+.|.|.+.|. |.+ .|.|+|++..+... +..
T Consensus 193 Y~C~a~n~~~~~~~-~~~~~~~~~~~~~P~v~~~~~~~~~~~G~~~~l~C~~~g~~P~p~~v~W~k~g~~~~~~~~~~~~ 271 (523)
T 2rcj_C 193 YSCQVTHEGSTVEK-TVAPTECSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPQPVTVSWNSGALTSGVHTFPAVL 271 (523)
T ss_pred EEEEEEecCccccc-ceeeeecCCCCcCCEEEecCCCcccccCCceEEEEEEeceeCCCeEEEEecCCcccceEeCCcEe
Confidence 99999998775432 23332 2345666644445567899999999999876 777 89999999875421 111
Q ss_pred -----EeccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEEeeCCeEEe-cCCCcE-EeeCCeEEEEEEEecCCC--
Q psy574 147 -----VLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRE-RPSDLR-LEVGRDAVFLCGIEGSPP-- 217 (977)
Q Consensus 147 -----~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~~~p~~~~-~p~~~~-v~~G~~v~L~C~~~g~p~-- 217 (977)
......|.|.++..+| |.|+|.|.|..|.....+.|.|...|.+.. .|.... +.+|+.++|.|.+.|.++
T Consensus 272 ~~~g~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~g~~~~~~~l~v~~~P~~~~~~p~~~~~v~~g~~~~l~C~~~g~~p~~ 350 (523)
T 2rcj_C 272 QSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPLSLPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHED 350 (523)
T ss_pred cCCCcEEEEEEEEechhhcCC-ceEEEEEEeCCCCcceEEecCCCcCceEEecCCCchhhcccCCceEEEEEEecccCCC
Confidence 0112479999999999 999999999999877777887776676544 444444 889999999999998654
Q ss_pred --CeEEEEEcCeeeeecCCCccccEEEEEccCC----ceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEECCCCC
Q psy574 218 --PSTFWMLEGNRSLIYPGDRVDNIQAEITSDG----MNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPN 291 (977)
Q Consensus 218 --~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g----~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~~~~~ 291 (977)
+.|.|+|+|..+.... ........+| .+.|.|.++..+|+|.|+ |.|.|..+.......+.+... ..
T Consensus 351 ~~~~v~W~k~g~~l~~~~-----~~~~~~~~~g~~~~~s~L~i~~~~~~d~G~Y~-C~a~n~~~~~~~~~~~~~~~~-~~ 423 (523)
T 2rcj_C 351 PQVKFNWYVDGVQVHNAK-----TKPREQQYNSTYRVVSVLTVLHQNWLDGKEYK-CKVSNKALPAPIEKTISKAKG-QP 423 (523)
T ss_pred CceEEEEEECCeEccCCc-----cCCceecCCCcEEEEEEEEECHHHhcCCCeEE-EEEeCCCCCCceeEEEEcccC-CC
Confidence 4899999998764221 1111111112 137999999999999999 999998887765555553211 12
Q ss_pred CCCeEEe-CCCceeecCCCcEEEEEEEcc--Cc--eEEEEECCEEcCCCC--cEEEecCce------EEEeccCCCCCeE
Q psy574 292 PPPVILF-GPANQTLPLRSEARLRCQVRG--EG--SVQWWRGEREVGSGP--RVNVTGDGS------LVLTDVTKEDSGE 358 (977)
Q Consensus 292 ~pp~i~~-~p~~~~v~~g~~~~L~C~~~~--~p--~i~W~~~g~~l~~~~--~~~~~~~~s------l~I~~v~~~d~G~ 358 (977)
.+|.+.. .+....+..|+ +.|.|.+.+ ++ .+.|++||..+.... ......+++ |.|......|.|.
T Consensus 424 ~~P~v~~~~~~~~~~~~~~-~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~gt~~~~~~l~v~~~~~~~~g~ 502 (523)
T 2rcj_C 424 REPQVYTLPPSREEMTKNQ-VSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNV 502 (523)
T ss_pred CCCEEEEeCCChHHccCCc-eEEEEEEEeeECCCCEEEEEECCEECCCeeeccceeCCCCCEEEEEEEEEChHHccCCCe
Confidence 2555443 33333344444 999999998 44 899999999886442 222344554 3344444467999
Q ss_pred EEEEEEcCCC
Q psy574 359 YTCVVKSPHG 368 (977)
Q Consensus 359 Y~C~a~n~~G 368 (977)
|+|.|.|...
T Consensus 503 Y~C~a~n~~l 512 (523)
T 2rcj_C 503 FSCSVMHEAL 512 (523)
T ss_pred EEEEEEcCCc
Confidence 9999999754
No 32
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A
Probab=100.00 E-value=3.4e-32 Score=295.65 Aligned_cols=276 Identities=23% Similarity=0.412 Sum_probs=229.4
Q ss_pred cccceecccceEEeCCCcEEEEEECCCCCC-CCeEEEEe-CCEEeecCCCceEEEe----cCcEEEEcCCCCCCCeEEEE
Q psy574 5 REEFRVQPKSQRVAAGDTALLECGPPRGHP-EPTLVWKK-NGHPIDFENSKRLRLV----DGTNLAIQDSRKTDDGRYQC 78 (977)
Q Consensus 5 ~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P-~~~v~W~k-~g~~l~~~~~~r~~~~----~~g~L~I~~v~~~D~G~Y~C 78 (977)
.+.|.+.|.++.+.+|++++|.|.+ .+.| .+.|.|+| ||..+.. ...|+.+. .++.|.|.+++.+|+|.|+|
T Consensus 2 ~~~v~~~p~~~~v~~G~~v~l~C~~-~~~~~~~~i~W~~~~g~~~~~-~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C 79 (291)
T 1qz1_A 2 VLQVDIVPSQGEISVGESKFFLCQV-AGDAKDKDISWFSPNGEKLSP-NQQRISVVWNDDDSSTLTIYNANIDDAGIYKC 79 (291)
T ss_dssp CCCEEEESSSEEEETTCCEEEEEEE-SSCCSCCEEEEECTTSCBCCS-SCSSEEEEEEETTEEEEEECSCCGGGCEEEEE
T ss_pred CcceEecCCCceEeCCCeEEEEEEe-CCCCCCcEeEEECCCCeECcc-CCceEEEEEcCCCeEEEEEecCCCCCCEEEEE
Confidence 3678899999999999999999999 5655 79999999 8888843 34455553 23579999999999999999
Q ss_pred EEEecCceeeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCC---CceEEeccceEEE
Q psy574 79 VVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPE---DRMSVLPSRSLQL 155 (977)
Q Consensus 79 ~a~n~~g~~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~---~~~~~~~~~~L~I 155 (977)
.+.|..|...+..+.|.|..+|.+...|....+.+|+.+.|.|.+.|.|.+.+.|++++..+.. .++....++.|.|
T Consensus 80 ~~~n~~g~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i 159 (291)
T 1qz1_A 80 VVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQI 159 (291)
T ss_dssp EEECTTSCEEEEEEEEEEECCSEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEETTSCSSTTCCTTEEECTTSCEEE
T ss_pred EEEcCCCCeeEEEEEEEeeccccccCCCCcccccCCCeEEEEEEeccCCCCEEEEEECCEEcccCCCceEEEccCCcEEE
Confidence 9999987666778899999999999999999999999999999999999999999999988743 4556667789999
Q ss_pred ccCccCCCeEEEEEEEeCCee--EEEEEEEEEeeCCeEEecCC--CcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeee
Q psy574 156 SDVRLEDAGEYVCEAENAVGK--ISASATLTVQMAPIVRERPS--DLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLI 231 (977)
Q Consensus 156 ~~v~~~D~G~Y~C~a~n~~g~--~~~~~~L~V~~~p~~~~~p~--~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~ 231 (977)
.++..+|+|.|+|.|.|..+. ....+.|.|..+|.+...+. ...+.+|+.++|.|.+.|.|.+.+.|+++|..+..
T Consensus 160 ~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~g~~~~~ 239 (291)
T 1qz1_A 160 RGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIEN 239 (291)
T ss_dssp TTCCGGGCEEEEEEEEEGGGTEEEEEEEEEEEEEEEEEEESCSEEEEETTSCCCEEEEEEEEEESCCEEEEEETTEECCC
T ss_pred ccCccccCeEEEEEEEecCCCceeeEEEEEEEecCCcccccccccccccccCceEEEEEEEEEeCCCcEEEEECCEECcC
Confidence 999999999999999997543 45678888888888876544 44677899999999999999999999999987642
Q ss_pred cCCCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEEC
Q psy574 232 YPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSG 287 (977)
Q Consensus 232 ~~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~ 287 (977)
... ...++.... +.+.|.|.++..+|+|.|+ |.|.|..|.....+.|.|..
T Consensus 240 ~~~-~~~~~~~~~---~~~~L~i~~v~~~d~G~Y~-C~a~N~~G~~~~~~~l~V~~ 290 (291)
T 1qz1_A 240 EEE-DDEKHIFSD---DSSELTIRNVDKNDEAEYV-CIAENKAGEQDASIHLKVFA 290 (291)
T ss_dssp C---CCSSEEECT---TSCEEEECSCCGGGCEEEE-EEEEETTEEEEEEEEEEEEC
T ss_pred CCC-CCcceEEcC---CCcEEEEEecChhcCEEEE-EEEEeCCCceEEEEEEEEEc
Confidence 210 112343332 3358999999999999999 99999999999999998864
No 33
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}
Probab=100.00 E-value=4.1e-32 Score=297.23 Aligned_cols=269 Identities=27% Similarity=0.419 Sum_probs=214.9
Q ss_pred cccccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecC---cEEEEcCCCC-CCCeEEEE
Q psy574 3 LLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG---TNLAIQDSRK-TDDGRYQC 78 (977)
Q Consensus 3 ~l~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~---g~L~I~~v~~-~D~G~Y~C 78 (977)
...|.|...|.++.+.+|++++|.|.+ .|.|.+.|.|+|||..+.. ...++....+ ..|.|.+++. +|+|.|+|
T Consensus 4 ~~~P~~~~~p~~~~v~~G~~v~l~C~~-~g~p~~~i~W~k~g~~i~~-~~~~~~~~~~~~~~~L~i~~~~~~~D~G~Y~C 81 (304)
T 2yd9_A 4 EEPPRFIKEPKDQIGVSGGVASFVCQA-TGDPKPRVTWNKKGKKVNS-QRFETIEFDESAGAVLRIQPLRTPRDENVYEC 81 (304)
T ss_dssp CCCCEEEECCCCEEEETTSCEEEEEEE-ECSSCCEEEEC-------C-TTEEEEEETTTTEEEEEECSCCTTTTCSEEEE
T ss_pred ccCCeeeecCCceEecCCCeEEEEEEE-EEeCCCeEEEEECCEECCC-CceEEEEecCCCceEEEEecccccCCCeEEEE
Confidence 457889999999999999999999999 7899999999999999843 2222222233 4699999998 99999999
Q ss_pred EEEecCceeeeEeEEEEEEcC-------CeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCC----ceEE
Q psy574 79 VVKNVAGTRESTDAVLRVLVK-------PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED----RMSV 147 (977)
Q Consensus 79 ~a~n~~g~~~s~~~~l~V~~~-------P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~----~~~~ 147 (977)
.|.|..|. .+..+.|.|..+ |.+...|....+.+|+++.|.|.+.|.|.+.+.|+|++..+... ++..
T Consensus 82 ~a~n~~g~-~~~~~~l~V~~~~~~p~~~p~i~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~ 160 (304)
T 2yd9_A 82 VAQNSVGE-ITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQ 160 (304)
T ss_dssp EEECSSCE-ECCEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEECCEEECSSCCEEEEEETTEECCGGGGTTSEEE
T ss_pred EEECCCCe-EEEEEEEEEeccccCCCCCCeeecCCccEEEeCCCeEEEEEECccCCCCeEEEEECCEECcCCCCcceEEe
Confidence 99998887 456788999865 77888888889999999999999999999999999999887542 4555
Q ss_pred eccceEEEccCccCCCeEEEEEEEeCCeeEEEE-EEEEEe---eCCeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEE
Q psy574 148 LPSRSLQLSDVRLEDAGEYVCEAENAVGKISAS-ATLTVQ---MAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWM 223 (977)
Q Consensus 148 ~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~-~~L~V~---~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~ 223 (977)
..++.|.|.+++.+|+|.|+|.|.|..|..... +.|.|. .+|.+...+....+.+|+.++|.|.+.|.|.+.+.|+
T Consensus 161 ~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~ 240 (304)
T 2yd9_A 161 LRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWM 240 (304)
T ss_dssp CTTSCEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEECCCEEEEEEECCCCBCCCTTCCEEEEEEEEEESCCEEEEE
T ss_pred CCCeEEEEccCCcccCEEEEEEEEeCCCCEEeccEEEEEEeeccCCcEEecCCceEEcCCCeEEEEEEEeeeCCCEEEEE
Confidence 677899999999999999999999999875532 455553 6788888888888999999999999999999999999
Q ss_pred EcCeeeeecCCCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEEC
Q psy574 224 LEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSG 287 (977)
Q Consensus 224 ~~g~~~~~~~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~ 287 (977)
+++..+.... ++ ..+...|.|.++ +|+|.|+ |.|.|..|.....+.|.|..
T Consensus 241 ~~~~~l~~~~-----~~-----~~~~~~L~i~~~--~d~G~Y~-C~a~N~~G~~~~~~~l~V~~ 291 (304)
T 2yd9_A 241 QGAEDLTPED-----DM-----PVGRNVLELTDV--KDSANYT-CVAMSSLGVIEAVAQITVKS 291 (304)
T ss_dssp ETTEECSCSS-----SC-----CBSEEEEEECSC--CSCEEEE-EEEEETTEEEEEEEEEC---
T ss_pred ECCEECCCcc-----cc-----cCCcEEEEEccc--ccCEEEE-EEEEeCCCcEEEEEEEEEec
Confidence 9998764221 11 124346777665 6999999 99999999999999999987
No 34
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Probab=100.00 E-value=4.5e-31 Score=285.81 Aligned_cols=271 Identities=25% Similarity=0.435 Sum_probs=234.6
Q ss_pred EcCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCC-ceEEe---ccceEEEccCccCCCeEEEEEEEe
Q psy574 97 LVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED-RMSVL---PSRSLQLSDVRLEDAGEYVCEAEN 172 (977)
Q Consensus 97 ~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~-~~~~~---~~~~L~I~~v~~~D~G~Y~C~a~n 172 (977)
..+|.|...|.+..+.+|++++|.|.+.|.|.+.|.|+|++..+..+ ++.+. ....|.|.+++.+|+|.|+|.|.|
T Consensus 3 ~~pP~~~~~p~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n 82 (284)
T 2rik_A 3 MAPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASN 82 (284)
T ss_dssp CCCCEEEECCCCEEEETTCCEEEEEEEESSSCCEEEEEETTEECCSSSSEEEEEETTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred cCCCEEEccccceEecCCCcEEEEEEEEcCCCCEEEEEECCEECcCCCcEEEEEcCCEEEEEEecCCcccCEEEEEEEEE
Confidence 35789999999999999999999999999999999999999988653 33332 347899999999999999999999
Q ss_pred CCeeEEEEEEEEEeeCCeEEecCCC-cEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCccccEEEEEccCCceE
Q psy574 173 AVGKISASATLTVQMAPIVRERPSD-LRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNL 251 (977)
Q Consensus 173 ~~g~~~~~~~L~V~~~p~~~~~p~~-~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~s~ 251 (977)
..|..+..+.|.|..+|.+...+.. ..+.+|+.+.|.|.+.+.|.+.+.|++++..+. ...++..... .+...
T Consensus 83 ~~g~~~~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~-----~~~~~~~~~~-~~~~~ 156 (284)
T 2rik_A 83 VAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQ-----ESSKFRMSFV-ESVAV 156 (284)
T ss_dssp TTEEEEEEEEEEEECCCEEEECCCSEEEEETTCCEEEEEEEESSSCCEEEEEETTEECC-----CSSSEEEEEE-TTEEE
T ss_pred CCceEEEEEEEEccCCCcccccCCCceEecCCceEEEEEEEeeeCCCEEEEEECCEECc-----CCCcEEEEEc-CCEEE
Confidence 9999999999999999988776554 468899999999999999999999999998764 2234443332 34468
Q ss_pred EEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEECCCCCCCCeEEeCCCceeecCCCcEEEEEEEcc--CceEEEEECC
Q psy574 252 LKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG--EGSVQWWRGE 329 (977)
Q Consensus 252 L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~~~~~~pp~i~~~p~~~~v~~g~~~~L~C~~~~--~p~i~W~~~g 329 (977)
|.|.+++.+|+|.|+ |.|.|..|.....+.|.|.. +|.+...|....+..|+.+.|.|.+.+ .+.+.|++++
T Consensus 157 L~i~~~~~~d~G~Y~-C~a~n~~g~~~~~~~l~V~~-----~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~~ 230 (284)
T 2rik_A 157 LEMYNLSVEDSGDYT-CEAHNAAGSASSSTSLKVKE-----PPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDK 230 (284)
T ss_dssp EEECSCCGGGCEEEE-EEEECSSCEEEEEEEEEEEC-----CCBCCSCCCCEEECTTCCEEEEEECBSSSCCEEEEEETT
T ss_pred EEECCCCcccCEEEE-EEEEcCCCceeEEEEEEEec-----CCcceeCCCcceecCCCeEEEEEEEEecCCCEEEEEECC
Confidence 999999999999999 99999999999999999998 677777888888999999999999998 6789999999
Q ss_pred EEcCCCCcEEEecC---ceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEE
Q psy574 330 REVGSGPRVNVTGD---GSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFE 379 (977)
Q Consensus 330 ~~l~~~~~~~~~~~---~sl~I~~v~~~d~G~Y~C~a~n~~G~~~~s~~l~v~ 379 (977)
..+....++.+..+ .+|.|.++...|.|.|+|.|.|..|....++.|.|+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 283 (284)
T 2rik_A 231 RELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLK 283 (284)
T ss_dssp EEECBTTTEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred EECcCCCCEEEEEcCCEEEEEEcCCCcccCEEEEEEEEeCCCceeEEEEEEEc
Confidence 99988777766554 369999999999999999999999999999988875
No 35
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R
Probab=100.00 E-value=5.5e-33 Score=345.38 Aligned_cols=445 Identities=15% Similarity=0.169 Sum_probs=132.0
Q ss_pred cccceEEeCC--CcEEEEEECCCCCCCCeEEEEeC--CEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecCce
Q psy574 11 QPKSQRVAAG--DTALLECGPPRGHPEPTLVWKKN--GHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGT 86 (977)
Q Consensus 11 ~p~~~~v~~G--~~v~L~C~~~~g~P~~~v~W~k~--g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g~ 86 (977)
.|..+.+.+| +.++|.|.+ .+ |.+.|.|+|+ |..+..+ ..++.......|.|.+++.+|+|.|+|.+.+....
T Consensus 132 ~~~~~~v~~G~~~~v~L~C~~-~~-p~~~v~w~~~~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 208 (772)
T 3v2a_R 132 QHGVVYITENKNKTVVIPCLG-SI-SNLNVSLCARYPEKRFVPD-GNRISWDSKKGFTIPSYMISYAGMVFCEAKINDES 208 (772)
T ss_dssp CEEEEEEESSCCCEEEECCCC-SC-SSCCEEEEEETTTEEECCC-SSSCEEETTTEEEEEGGGTTTCSEEEEEEEETTEE
T ss_pred cceeEEEecCCCCeEEEEccC-CC-CCcEEEEEecCCCccccCC-CceeecCCCCCeEecCCChhhCeEEEEEEEECCce
Confidence 3556788999 899999998 44 7789999998 7766333 23344555678999999999999999999987555
Q ss_pred eeeEeEEEEEEcC--CeEEe-CCCceEEeCCCeEEEEEEecc--cCceEEEEEECCeeCCCCceE------------Eec
Q psy574 87 RESTDAVLRVLVK--PYIIR-GPKDTTVSASSIIVFECSVGG--DAVLTVHWKRLGSAMPEDRMS------------VLP 149 (977)
Q Consensus 87 ~~s~~~~l~V~~~--P~~~~-~p~~~~v~~G~~v~l~C~v~g--~p~~~i~W~k~~~~l~~~~~~------------~~~ 149 (977)
..+..+.+.+... |.+.. .+....+.+|++++|.|.+.+ .+.+.+.|++++..+...... ...
T Consensus 209 ~~s~~~~~~v~~~~~~~v~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (772)
T 3v2a_R 209 YQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKF 288 (772)
T ss_dssp EECCEEEEEEECCCEEEEEEECCSCEEEETTCCEEEEEEEEECTTCCCEEEEECC--------CEEEEC-----CCCEEE
T ss_pred EEEEEEEEEEecCccceeeeCCCCceEEecCCcEEEEEEEecCCCCceeEEEecCCccCCCceeeeccccccccccceEE
Confidence 4555455655533 33333 344578999999999999977 456789999998876442211 113
Q ss_pred cceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEEeeCCeEEecC---CCcEEeeCCeEEEEEEEecCCCCeEEEEEcC
Q psy574 150 SRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERP---SDLRLEVGRDAVFLCGIEGSPPPSTFWMLEG 226 (977)
Q Consensus 150 ~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~~~p~~~~~p---~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g 226 (977)
...|.|.+++.+|+|.|+|.+.|..+..+..+.|.|..+|.+...+ ....+.+|+.++|.|.+.+.|.+.+.|+++|
T Consensus 289 ~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~g 368 (772)
T 3v2a_R 289 LSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNG 368 (772)
T ss_dssp EEEEEESSCCSTTCSEEEEEEECSSCEEEEEEEEEEECCCC---------------------------------------
T ss_pred EEEEEECcCCcCCCeEEEEEEEcCCcceeEEEEEEEeCCCeeEeccCCCCcEEEcCCCcEEEEEEEeeeCCCeEEEEECC
Confidence 4579999999999999999999999988899999999888766543 4567899999999999999999999999999
Q ss_pred eeeeecCCCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeE--EEEEEEECCCCCCCCeEEeC---CC
Q psy574 227 NRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLA--RASLTVSGPDPNPPPVILFG---PA 301 (977)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~--~~~l~V~~~~~~~pp~i~~~---p~ 301 (977)
..+.. ++.+. +...|.|.++..+|+|.|+ |.|.|..|.... .+.|.|.. +|.+... +.
T Consensus 369 ~~l~~-------~~~~~----~~~~L~i~~v~~~d~G~Y~-C~a~n~~g~~~~s~~~~l~v~~-----~P~~~~~~~~~~ 431 (772)
T 3v2a_R 369 IPLES-------NHTIK----AGHVLTIMEVSERDTGNYT-VILTNPISKEKQSHVVSLVVYV-----PPQIGEKSLISP 431 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EeCCC-------CceEc----cceeEEEecCChhcCceEE-EEEEECCcCeEEEEEEEEEEec-----CCcccccccCCC
Confidence 87642 11111 2248999999999999999 999999887643 44566655 4444322 11
Q ss_pred ceeecCCCcEEEEEEEcc--Cce-EEEEECCEE--------------------------------cCC-CCcEEEec---
Q psy574 302 NQTLPLRSEARLRCQVRG--EGS-VQWWRGERE--------------------------------VGS-GPRVNVTG--- 342 (977)
Q Consensus 302 ~~~v~~g~~~~L~C~~~~--~p~-i~W~~~g~~--------------------------------l~~-~~~~~~~~--- 342 (977)
...+..|+.+.|.|.+.+ .|. +.|++++.. +.. ..+.....
T Consensus 432 ~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~ 511 (772)
T 3v2a_R 432 VDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKN 511 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccCCCCcEEEEeEeccCCCCcEEEEEEcCCccccccccccccccCcCccccccccccccCCCcEEEeccceeeccCcc
Confidence 123788999999999999 554 999997432 100 01111111
Q ss_pred --CceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEECCCCCCCcccCCCCCCCCCCCCCCCeEEeeCCCceEEEEEc
Q psy574 343 --DGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGLTLAWSR 420 (977)
Q Consensus 343 --~~sl~I~~v~~~d~G~Y~C~a~n~~G~~~~s~~l~v~~~~~~~~~~~~~~~~~~~p~~P~~~~v~~~~~~sv~lsW~~ 420 (977)
...|.|..+ .|+|.|+|.|.|..|..+..+.+.|..++.... .+......+....+.|.........+.|..
T Consensus 512 ~~~~~L~i~~~--~d~G~Y~C~a~N~~g~~~~~~~l~V~~~p~i~~----~p~~~~~~G~~v~l~C~~~~~p~~~v~W~k 585 (772)
T 3v2a_R 512 KTVSTLVIQAA--NVSALYKCEAVNKVGRGERVISFHVTRGPEITL----QPDMQPTEQESVSLWCTADRSTFENLTWYK 585 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eEEEEEEEeec--ccCeEEEEEEEccccccceeEEEEEECCceeec----cCCcccccCCceEEEEeccCCCCCCcEEEE
Confidence 135777766 589999999999999988888888876443221 111112233333444443344445677876
Q ss_pred CCCCCCcccceEEEEEeecCCCCCCCCCCCCcccEEEec-----eecCcCeEEEEccCCCCeEEEEEEEEcCCCCC
Q psy574 421 NNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVA-----TNVPSPILTVTNLTVGLTYTFLVRALNSHGLS 491 (977)
Q Consensus 421 p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~-----~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~G~s 491 (977)
...... ......+....... ....|.... .......+.|.++.......|+|.|.|..|..
T Consensus 586 ~~~~~~-~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~ 651 (772)
T 3v2a_R 586 LGPQPL-PIHVGELPTPVCKN---------LDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKK 651 (772)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred cCCccc-ccccCccccccccc---------ccceeeccceeeecCCCceEEEEECCCCccCCcEEEEEEEeCCCCe
Confidence 443100 00000000000000 000111110 01112347789999999999999999966543
No 36
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}
Probab=100.00 E-value=5.4e-32 Score=294.07 Aligned_cols=273 Identities=20% Similarity=0.359 Sum_probs=225.6
Q ss_pred cccccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEe-CCEEeecCCCceEEEecCc---EEEEcCCCCCCCeEEEE
Q psy574 3 LLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKK-NGHPIDFENSKRLRLVDGT---NLAIQDSRKTDDGRYQC 78 (977)
Q Consensus 3 ~l~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k-~g~~l~~~~~~r~~~~~~g---~L~I~~v~~~D~G~Y~C 78 (977)
+..+.|.+.|.++.+.+|+.++|.|.+ .+.|. .|.|+| +|..+.. ..|+.+..++ .|.|.+++.+|+|.|+|
T Consensus 2 ~~~p~v~~~~~~~~v~~G~~v~l~C~~-~~~p~-~v~W~~~~g~~~~~--~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C 77 (291)
T 2wim_A 2 MALLQVTISLSKVELSVGESKFFTCTA-IGEPE-SIDWYNPQGEKIIS--TQRVVVQKEGVRSRLTIYNANIEDAGIYRC 77 (291)
T ss_dssp -CCCEEEESCSEEEEETTCCEEEEEEE-ESCCS-EEECBCTTCCBCCC--BTTEEEEEETTEEEEEECSCCGGGCEEEEE
T ss_pred CCCceEEEeccceEecCCCcEEEEEEE-eCCCC-ceEEECCCCcCccC--CCcEEEecCCCEEEEEEccCCcccCEEEEE
Confidence 456889999999999999999999999 67774 899999 7777743 3466665544 79999999999999999
Q ss_pred EEEecCceeeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCC---CCceEEeccceEEE
Q psy574 79 VVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMP---EDRMSVLPSRSLQL 155 (977)
Q Consensus 79 ~a~n~~g~~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~---~~~~~~~~~~~L~I 155 (977)
.+.|..|...+..+.|.|..+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+. ..++.+..++.|.|
T Consensus 78 ~~~n~~g~~~~~~~~l~v~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i 157 (291)
T 2wim_A 78 QATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQI 157 (291)
T ss_dssp EEECSSSCEEEEEEEEEEECCCBCCSCCCSEEEETTSCEEECCCCBCSSCCEEEEECC----CBCCCSSEEECTTSCEEE
T ss_pred EEecccCceEEEEEEEEecCCcceEeCCCChhhcCCCCEEEEEEEccCCCCEEEEEECCccccccCCceEEEccCCCEEE
Confidence 999998877677888999999998888888999999999999999999999999999988764 45666677889999
Q ss_pred ccCccCCCeEEEEEEEeCCee--EEEEEEEEEeeCCeEEecCC--CcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeee
Q psy574 156 SDVRLEDAGEYVCEAENAVGK--ISASATLTVQMAPIVRERPS--DLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLI 231 (977)
Q Consensus 156 ~~v~~~D~G~Y~C~a~n~~g~--~~~~~~L~V~~~p~~~~~p~--~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~ 231 (977)
.+++.+|+|.|+|.+.|..+. ....+.|.|..+|.+...+. ...+.+|+.++|.|.+.|.|.+.+.|+++|..+.
T Consensus 158 ~~v~~~d~G~Y~C~~~n~~~~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~- 236 (291)
T 2wim_A 158 LNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIE- 236 (291)
T ss_dssp TTCCGGGCEEEEEEEEETTTTEEEEEEEEEEEEBCCCCBCSCSEEECCSSSCCEEEEECBCCCBSCCEEEEEETTEECC-
T ss_pred EecchhhCEEEEEEEEECCCCeeEEeeEEEEeccCCccccCcccccceecCCCeEEEEEEeecCCCCeEEEEECCEECc-
Confidence 999999999999999998743 44667888888888766554 3467899999999999999999999999998763
Q ss_pred cCCCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEECC
Q psy574 232 YPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGP 288 (977)
Q Consensus 232 ~~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~~ 288 (977)
...++.+.. ....|.|.++..+|+|.|+ |.|.|..|....++.|.|..+
T Consensus 237 ----~~~~~~~~~---~~~~L~i~~~~~~d~G~Y~-C~a~N~~G~~~~~~~l~v~~~ 285 (291)
T 2wim_A 237 ----ENEKYILKG---SNTELTVRNIINSDGGPYV-CRATNKAGEDEKQAFLQVFVQ 285 (291)
T ss_dssp ----CTTTEEECS---TTCEEEEESCCSTTCEEEE-EEEEETTEEEEEEEEEEC---
T ss_pred ----CCccEEEcC---CccEEEEeeCCcccCEEEE-EEEEECCCceeeeEEEEEEEe
Confidence 233444332 2348999999999999999 999999999999999999874
No 37
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*
Probab=100.00 E-value=1.1e-31 Score=304.29 Aligned_cols=263 Identities=27% Similarity=0.459 Sum_probs=217.3
Q ss_pred cceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecCceee--eE
Q psy574 13 KSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRE--ST 90 (977)
Q Consensus 13 ~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~--s~ 90 (977)
..+.+.+|+.++|.|.++.+.|.+.+.|++|+..+. ....++....++.|.|.+++.+|+|.|+|.|.|..+... +.
T Consensus 110 ~~~~v~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~-~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~ 188 (384)
T 3kld_A 110 STVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSY-QDNRRFVSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGP 188 (384)
T ss_dssp CCEEEEETCCEEECCCCCSEESCEEEEEEETTEECC-CSSSEEECTTTCCEEESSCCGGGCEEEEEEEEETTTTEEEECC
T ss_pred CceeEEcCCCeEEecCCCCCCCCeEEEEEECCCCCE-eeccEEEEcCCCcEEEeecCHHHCceEEEEEecccccceeeCC
Confidence 458899999999999876677889999999999884 334455555678999999999999999999999876432 12
Q ss_pred eEEEEEE-------cCCe-EEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCe-eCCCCceEEeccceEEEccCccC
Q psy574 91 DAVLRVL-------VKPY-IIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGS-AMPEDRMSVLPSRSLQLSDVRLE 161 (977)
Q Consensus 91 ~~~l~V~-------~~P~-~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~-~l~~~~~~~~~~~~L~I~~v~~~ 161 (977)
...+.+. .+|. ....|....+.+|+++.|.|.+.|.|.|.+.|+|++. .+.........++.|.|.+++.+
T Consensus 189 ~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~L~I~~v~~~ 268 (384)
T 3kld_A 189 PTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQE 268 (384)
T ss_dssp CEEEEEEEEEECCCEEEEEEEECCSEEEEETTSCEEEEEEEEEESCCEEEEEETTCCCCCTTCEECTTSCEEEECSCCGG
T ss_pred ceEEEEccCCcccccCCceeecCCCceEecCCCcEEEEEEEeecCCCcEEEEeCCCccccccceecCCCcEEEECCCChh
Confidence 2233332 1233 3445777889999999999999999999999999654 55443333335678999999999
Q ss_pred CCeEEEEEEEeCCeeEEEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCccccEE
Q psy574 162 DAGEYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQ 241 (977)
Q Consensus 162 D~G~Y~C~a~n~~g~~~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~ 241 (977)
|+|.|+|.|.|..|.....+.|.|..+|.+...+.+..+.+|+.+.|.|.+.|.|.|.|.|+|+|..+. ...++.
T Consensus 269 D~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~i~W~k~g~~l~-----~~~~~~ 343 (384)
T 3kld_A 269 DAGSYECVAENSRGKNVAKGQLTFYAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLL-----TRDRIQ 343 (384)
T ss_dssp GCEEEEEEEEETTEEEEEEEEEEEEEEEEEEECCCCEEECTTCCEEEECEEEEESCCEEEEEETTEECC-----CBTTEE
T ss_pred hCEEEEEEEEcCCCeEEEEEEEEEecCCccccCCCceEecCCCCEEEEeECCccCCCeEEEEECCEECC-----CCccEE
Confidence 999999999999999999999999999999999999999999999999999999999999999998763 344555
Q ss_pred EEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEEC
Q psy574 242 AEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSG 287 (977)
Q Consensus 242 ~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~ 287 (977)
+. ++ .|.|.++..+|+|.|+ |.|.|..|....++.|.|..
T Consensus 344 ~~---~~--~L~i~~v~~~D~G~Y~-C~A~N~~G~~~~~a~L~V~~ 383 (384)
T 3kld_A 344 IE---QG--TLNITIVNLSDAGMYQ-CVAENKHGVIFSSAELSVIA 383 (384)
T ss_dssp EE---TT--EEEESSCCGGGCEEEE-EEEEETTEEEEEEEEEEEC-
T ss_pred Ee---CC--EEEEeecChhhCEEEE-EEEEeCCceEEeceEEEEec
Confidence 43 34 8999999999999999 99999999999999998863
No 38
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R
Probab=100.00 E-value=4.6e-35 Score=364.12 Aligned_cols=358 Identities=20% Similarity=0.326 Sum_probs=0.0
Q ss_pred cceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecCceee-eEe
Q psy574 13 KSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRE-STD 91 (977)
Q Consensus 13 ~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~-s~~ 91 (977)
....+.+|+.++|.|.+ .+.|.+.|.|+|||..+.. +..+..++.|.|.+++.+|+|.|+|.|.|..|... +..
T Consensus 338 ~~~~v~~G~~v~l~C~~-~~~p~~~v~W~~~g~~l~~----~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~ 412 (772)
T 3v2a_R 338 SLVEATVGERVRIPAKY-LGYPPPEIKWYKNGIPLES----NHTIKAGHVLTIMEVSERDTGNYTVILTNPISKEKQSHV 412 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcEEEcCCCcEEEEEEE-eeeCCCeEEEEECCEeCCC----CceEccceeEEEecCChhcCceEEEEEEECCcCeEEEEE
Confidence 35779999999999999 7899999999999999843 33333457899999999999999999999877543 556
Q ss_pred EEEEEEcCCeEEeCC---CceEEeCCCeEEEEEEecccCceE-EEEEECCee----------------------------
Q psy574 92 AVLRVLVKPYIIRGP---KDTTVSASSIIVFECSVGGDAVLT-VHWKRLGSA---------------------------- 139 (977)
Q Consensus 92 ~~l~V~~~P~~~~~p---~~~~v~~G~~v~l~C~v~g~p~~~-i~W~k~~~~---------------------------- 139 (977)
+.|.|..+|.+.... ....+.+|+.++|.|.+.|.|.+. |.|++++..
T Consensus 413 ~~l~v~~~P~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (772)
T 3v2a_R 413 VSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQ 492 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEecCCcccccccCCCccccCCCCcEEEEeEeccCCCCcEEEEEEcCCccccccccccccccCcCcccccccccccc
Confidence 788888888775432 122488999999999999999997 999997322
Q ss_pred ----CCC--CceEEec-----cceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEEeeCCeEEecCCCcEEeeCCeEEE
Q psy574 140 ----MPE--DRMSVLP-----SRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVF 208 (977)
Q Consensus 140 ----l~~--~~~~~~~-----~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L 208 (977)
+.. .+..+.. ...|.|.++ +|+|.|+|.|.|..|..+..+.|.|..+|.+...|. ..+.+|+.++|
T Consensus 493 ~g~~i~~~~~~~~~~~~~~~~~~~L~i~~~--~d~G~Y~C~a~N~~g~~~~~~~l~V~~~p~i~~~p~-~~~~~G~~v~l 569 (772)
T 3v2a_R 493 GGNKIEVNKNQFALIEGKNKTVSTLVIQAA--NVSALYKCEAVNKVGRGERVISFHVTRGPEITLQPD-MQPTEQESVSL 569 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCcEEEeccceeeccCcceEEEEEEEeec--ccCeEEEEEEEccccccceeEEEEEECCceeeccCC-cccccCCceEE
Confidence 110 1111111 146777776 799999999999999988899999998888877665 45789999999
Q ss_pred EEEEecCCCCeEEEEEcCeeeeecCCCccc--------cE------EEEEccCCceEEEEeecccCCCCeEEEEEEEcCC
Q psy574 209 LCGIEGSPPPSTFWMLEGNRSLIYPGDRVD--------NI------QAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAA 274 (977)
Q Consensus 209 ~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~--------~~------~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~ 274 (977)
.|.+.+.|.+.+.|++++..+......... .+ .+.....+...|.|.+++.+|+|.|+ |.|.|..
T Consensus 570 ~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~-C~a~n~~ 648 (772)
T 3v2a_R 570 WCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYV-CLAQDRK 648 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEeccCCCCCCcEEEEcCCcccccccCcccccccccccceeeccceeeecCCCceEEEEECCCCccCCcEEE-EEEEeCC
Confidence 999999999999999998765321100000 00 00011122346999999999999999 9999976
Q ss_pred Ccee--EEEEEEEECCCCCCCCeEEeCCCceeecCCCcEEEEEEEcc--CceEEEEECCEEcCCCCcEEEec-CceEEEe
Q psy574 275 GSDL--ARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG--EGSVQWWRGEREVGSGPRVNVTG-DGSLVLT 349 (977)
Q Consensus 275 g~~~--~~~~l~V~~~~~~~pp~i~~~p~~~~v~~g~~~~L~C~~~~--~p~i~W~~~g~~l~~~~~~~~~~-~~sl~I~ 349 (977)
+... ..+.|.|.. ..+|.+...+.+..+..|+.++|.|.+.+ .|.|.|+++|..+....++.+.. .++|.|.
T Consensus 649 ~~~~~s~~~~l~v~~---~~~P~~~~~~~~~~v~~g~~~~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~L~I~ 725 (772)
T 3v2a_R 649 TKKRHCVVRQLTVLE---RVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIR 725 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCeEEEEEEeecccc---cCCCEeecCCCceEEeCCCCEEEEEEeCccCCCeEEEEECCeECcCCCCeEEcCCCcEEEEC
Confidence 5543 344555542 12677888888888999999999999998 77899999999987766655543 5689999
Q ss_pred ccCCCCCeEEEEEEEcCCCceEEEEEEEEECCC
Q psy574 350 DVTKEDSGEYTCVVKSPHGSASWSASLRFESPT 382 (977)
Q Consensus 350 ~v~~~d~G~Y~C~a~n~~G~~~~s~~l~v~~~~ 382 (977)
++...|+|.|+|.|.|..|..+.++.|.|.+++
T Consensus 726 ~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~p 758 (772)
T 3v2a_R 726 RVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQ 758 (772)
T ss_dssp ---------------------------------
T ss_pred cCCHHHCEEEEEEEEeCCcceeEEEEEEEECCC
Confidence 999999999999999999999999999998654
No 39
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}
Probab=99.98 E-value=3.2e-31 Score=302.51 Aligned_cols=271 Identities=30% Similarity=0.499 Sum_probs=235.1
Q ss_pred ccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeec-CCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecC
Q psy574 6 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDF-ENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVA 84 (977)
Q Consensus 6 ~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~-~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~ 84 (977)
+.|...+..+.+.+|++++|.|.+ .+.|.+.|.|+|+|..+.. ....++....++.|.|.+++.+|+|.|+|.+.|..
T Consensus 122 ~~~~~~~~~~~~~~G~~v~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~ 200 (403)
T 3laf_A 122 LRFLSQTESITAFMGDTVLLKCEV-IGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQPGDSGVYRCSARNPA 200 (403)
T ss_dssp CEECSCCCCEEEETTSCEEECCCE-ECSSCCEEEEEESSSBCCCCTTCCSEEECTTSCEEECSCCGGGCEEEEEEEECSS
T ss_pred CccccCCCcEEEEcCCeEEEEEEE-cccCCCeEEEEECCEeccccCCceEEEEcCCceEEEcccccccCEEEEEEEEcCC
Confidence 456667778899999999999998 7889999999999998843 33456777778899999999999999999999988
Q ss_pred ceeeeEeEEEEEEcCC------eEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCC--CceEEeccceEEEc
Q psy574 85 GTRESTDAVLRVLVKP------YIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPE--DRMSVLPSRSLQLS 156 (977)
Q Consensus 85 g~~~s~~~~l~V~~~P------~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~--~~~~~~~~~~L~I~ 156 (977)
+...+..+.|.|...| .+...+.+..+.+|+++.|.|.+.|.|.+.+.|+|++..+.. .++....++.|.|.
T Consensus 201 ~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~L~i~ 280 (403)
T 3laf_A 201 STRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLIS 280 (403)
T ss_dssp CCCBCCCEEEEEECCCCCCEEEEEEECCCCEEEETTSCEEECCEEEEESCCEEEEEETTEECCCSSSSEEEETTTEEEEC
T ss_pred CceeccceeEEEecCCCcccCceEecCCCceEecCCCcEEEEEEcCCCCCCeEEEEECCeeccCCCceEEECCccEEEEe
Confidence 7766667788888665 355677888899999999999999999999999999998764 44555577899999
Q ss_pred cCccCCCeEEEEEEEeCCeeEEEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCc
Q psy574 157 DVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDR 236 (977)
Q Consensus 157 ~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~ 236 (977)
+++.+|+|.|+|.|.|..|..+..+.|.|..+|.+...+.+..+.+|+.++|.|.+.|.|.+.+.|+++|..+. .
T Consensus 281 ~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~~~-----~ 355 (403)
T 3laf_A 281 NVTDDDSGTYTCVVTYKNENISASAELTVLVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVI-----P 355 (403)
T ss_dssp SCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEECCCCEECCTTCCEEECCEEEEESCCEEEEEETTEECC-----C
T ss_pred CCCHHHCEEEEEEEEcCCCceEEEEEEEEECCCcEeecCcceEEecCCeEEEEEEEeeccCCEEEEEECCEECC-----C
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998763 2
Q ss_pred cccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEEC
Q psy574 237 VDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSG 287 (977)
Q Consensus 237 ~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~ 287 (977)
..++.... .+ .|.|.++..+|+|.|+ |.|.|..|.....+.|.|..
T Consensus 356 ~~~~~~~~--~~--~L~i~~v~~~d~G~Y~-C~a~N~~G~~~~~~~l~V~~ 401 (403)
T 3laf_A 356 SDYFQIVG--GS--NLRILGVVKSDEGFYQ-CVAENEAGNAQSSAQLIVPK 401 (403)
T ss_dssp SSSEEEET--TT--EEEESSCCGGGCEEEE-EEEEETTEEEEEEEEEECCC
T ss_pred CCcEEEec--Cc--cEEEeccccccCEEEE-EEEEcCCceEEEEEEEEEeC
Confidence 33344332 23 8999999999999999 99999999999999999886
No 40
>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2
Probab=99.97 E-value=5.1e-31 Score=305.03 Aligned_cols=352 Identities=14% Similarity=0.192 Sum_probs=237.2
Q ss_pred eecccceEEeCCCcEEEEEECCCCCC--CCeEEEEeC--CEEee---------------cCCCceEEEec-----CcEEE
Q psy574 9 RVQPKSQRVAAGDTALLECGPPRGHP--EPTLVWKKN--GHPID---------------FENSKRLRLVD-----GTNLA 64 (977)
Q Consensus 9 ~~~p~~~~v~~G~~v~L~C~~~~g~P--~~~v~W~k~--g~~l~---------------~~~~~r~~~~~-----~g~L~ 64 (977)
..+|..+.+.+|++++|.|.+ .+.+ .+.|.|+|+ |..+. ....+|+.+.. +++|.
T Consensus 4 ~~~p~~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~ 82 (444)
T 1igt_B 4 LQESGGGLVQPGGSLKLSCAT-SGFTFSDYYMYWVRQTPEKRLEWVAYISNGGGSTYYPDTVKGRFTISRDNAKNTLYLQ 82 (444)
T ss_dssp EEEECCCEECTTCCEEEEEEE-ESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCGGGTTTEEEEEETTTTEEEEE
T ss_pred EecCCCeEEcCCCCEEEEEEc-CCCccCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEeCCCCeEEEE
Confidence 346778999999999999998 4543 578999985 33211 11235777653 34799
Q ss_pred EcCCCCCCCeEEEEEEEecCce--eeeEeEEEEEEc----CCeEEeCCCceEEeCCCeEEEEEEeccc-Cce-EEEEEEC
Q psy574 65 IQDSRKTDDGRYQCVVKNVAGT--RESTDAVLRVLV----KPYIIRGPKDTTVSASSIIVFECSVGGD-AVL-TVHWKRL 136 (977)
Q Consensus 65 I~~v~~~D~G~Y~C~a~n~~g~--~~s~~~~l~V~~----~P~~~~~p~~~~v~~G~~v~l~C~v~g~-p~~-~i~W~k~ 136 (977)
|.+++.+|+|.|+|.+.|..+. .....+.|.|.. +|.+...+....+.+|+.++|.|.+.|. |.+ .|.|+|+
T Consensus 83 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~ 162 (444)
T 1igt_B 83 MSRLKSEDTAMYYCARHGGYYAMDYWGQGTTVTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSG 162 (444)
T ss_dssp ECSCCGGGCEEEEEEEECSSSCEEEEBCCEEEEECSCCCBCCEEEEECCCSSCCCSSCEEEEEEEEEEBSSCCEEEEGGG
T ss_pred ECCCCHHHCEEEEEEEecCCcccccccCcEEEEecCCCCCCCceeEecccccCCCCCcEEEEEEEcceeCCCcEEEEecC
Confidence 9999999999999999987654 233446788873 4555433333345899999999999875 776 9999999
Q ss_pred CeeCCC---Cc----eEEeccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEE------------------eeCCeE
Q psy574 137 GSAMPE---DR----MSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTV------------------QMAPIV 191 (977)
Q Consensus 137 ~~~l~~---~~----~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V------------------~~~p~~ 191 (977)
+..+.. .. ........|.|.++..+| |.|+|.|.|..+.......+.+ ..+|.+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~v 241 (444)
T 1igt_B 163 SLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKIEPRGPTIKPCPPCKCPAPNLLGGPSV 241 (444)
T ss_dssp TBCTTEEECCCEEETTEEEEEEEEEECSTTTTT-SCCEEEEEETTTTEEEEEECCCCCCSCCCCCCCSCCCSCCCCCCEE
T ss_pred CCCCCeEecCccccCCcEEEEEEEEEchhhcCC-CeEEEEEEeCCCCcceEEEeccCCCCcccCCccccCCcccCCCceE
Confidence 876421 11 011123579999999999 9999999999887544444432 235665
Q ss_pred EecCCCc-E-EeeCCeEEEEEEEecCC----CCeEEEEEcCeeeeecCCCccccEEEEEcc--CCceEEEEeecccCCCC
Q psy574 192 RERPSDL-R-LEVGRDAVFLCGIEGSP----PPSTFWMLEGNRSLIYPGDRVDNIQAEITS--DGMNLLKIQNVSRTAAP 263 (977)
Q Consensus 192 ~~~p~~~-~-v~~G~~v~L~C~~~g~p----~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~--~g~s~L~I~~v~~~d~G 263 (977)
...+... . +.+|+.++|.|.+.|.+ .+.+.|++++..+.... .......... ...+.|.|.+++.+|.|
T Consensus 242 ~~~~p~~~~~~~~G~~~~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~---~~~~~~~~~~~~~~~~~L~I~~v~~~d~G 318 (444)
T 1igt_B 242 FIFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQ---TQTHREDYNSTLRVVSALPIQHQDWMSGK 318 (444)
T ss_dssp EEECCCHHHHHCTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTT---CBCCEEECSSSEEEEEEEECCHHHHHTTC
T ss_pred EecCCchhheeecCCCcEEEEEEeecccCCCCeEEEEEECCccccCcc---cccceeCCCCcEEEEEEEEEcHHHhccCC
Confidence 3444333 3 58999999999999874 35999999997753211 1111111000 01248999999999999
Q ss_pred eEEEEEEEcCCCceeEEEEEEEECCCCCCCCeEEe-CCCceeecCCCcEEEEEEEcc--C-c-eEEEEECCEEcCCC--C
Q psy574 264 LIILCLGVNAAGSDLARASLTVSGPDPNPPPVILF-GPANQTLPLRSEARLRCQVRG--E-G-SVQWWRGEREVGSG--P 336 (977)
Q Consensus 264 ~Y~~C~a~n~~g~~~~~~~l~V~~~~~~~pp~i~~-~p~~~~v~~g~~~~L~C~~~~--~-p-~i~W~~~g~~l~~~--~ 336 (977)
.|+ |.|.|..+.......+.+.. ....+|.+.. .+....+..| .++|.|.+.+ + + .|.|+++|..+... .
T Consensus 319 ~Y~-C~a~n~~~~~~~~~~v~~~~-~~~~~P~v~~~~~~~~~~~~~-~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~ 395 (444)
T 1igt_B 319 EFK-CKVNNKDLPAPIERTISKPK-GSVRAPQVYVLPPPEEEMTKK-QVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNT 395 (444)
T ss_dssp EEE-EEEECTTCSSCEEEEEECCC-CCCBCCEEEEECCCGGGTTSS-EEEEEEEEEEEBSSCCEEEEEETTEECSSEEEC
T ss_pred cEE-EEEEcCCCCCceEEEEeccC-CCCCCCEEEEeCCChHHccCC-eEEEEEEEEeeeCCCCEEEEEECCEEccccccc
Confidence 999 99999988774444443211 1123566543 3333334445 4999999988 2 2 89999999988432 1
Q ss_pred cEEEecCce------EEEeccCCCCCeEEEEEEEcCCC
Q psy574 337 RVNVTGDGS------LVLTDVTKEDSGEYTCVVKSPHG 368 (977)
Q Consensus 337 ~~~~~~~~s------l~I~~v~~~d~G~Y~C~a~n~~G 368 (977)
......+++ |.|......|.|.|+|.|.|..-
T Consensus 396 ~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~a~n~~l 433 (444)
T 1igt_B 396 EPVLDSDGSYFMYSKLRVEKKNWVERNSYSCSVVHEGL 433 (444)
T ss_dssp CCEECTTSCEEEEEEEEEEHHHHHTCCCEEEEEECTTS
T ss_pred cceeCCCCCEEEEEEEEEChHHhcCCCeEEEEEECCCc
Confidence 222234554 44555555579999999999754
No 41
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}
Probab=99.97 E-value=4.8e-30 Score=280.80 Aligned_cols=274 Identities=27% Similarity=0.431 Sum_probs=215.9
Q ss_pred EcCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceEEe--cc---ceEEEccCcc-CCCeEEEEEE
Q psy574 97 LVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVL--PS---RSLQLSDVRL-EDAGEYVCEA 170 (977)
Q Consensus 97 ~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~--~~---~~L~I~~v~~-~D~G~Y~C~a 170 (977)
..+|.|...|.+..+.+|+++.|.|.+.|.|.+.|.|+|++..+...++.+. .+ ..|.|.+++. +|+|.|+|.|
T Consensus 4 ~~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~i~W~k~g~~i~~~~~~~~~~~~~~~~~L~i~~~~~~~D~G~Y~C~a 83 (304)
T 2yd9_A 4 EEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENVYECVA 83 (304)
T ss_dssp CCCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEC-------CTTEEEEEETTTTEEEEEECSCCTTTTCSEEEEEE
T ss_pred ccCCeeeecCCceEecCCCeEEEEEEEEEeCCCeEEEEECCEECCCCceEEEEecCCCceEEEEecccccCCCeEEEEEE
Confidence 4689999999999999999999999999999999999999999887776654 22 5799999998 9999999999
Q ss_pred EeCCeeEEEEEEEEEeeC-------CeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCccccEEEE
Q psy574 171 ENAVGKISASATLTVQMA-------PIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAE 243 (977)
Q Consensus 171 ~n~~g~~~~~~~L~V~~~-------p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~ 243 (977)
.|..|..+..+.|.|..+ |.+...|....+.+|+.++|.|.+.|.|.+.+.|++++..+... ....++.
T Consensus 84 ~n~~g~~~~~~~l~V~~~~~~p~~~p~i~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~k~~~~~~~~--~~~~~~~-- 159 (304)
T 2yd9_A 84 QNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPS--ASNGRIK-- 159 (304)
T ss_dssp ECSSCEECCEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEECCEEECSSCCEEEEEETTEECCGG--GGTTSEE--
T ss_pred ECCCCeEEEEEEEEEeccccCCCCCCeeecCCccEEEeCCCeEEEEEECccCCCCeEEEEECCEECcCC--CCcceEE--
Confidence 999999888999999865 77888888889999999999999999999999999999876421 1122333
Q ss_pred EccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEE-EEEEEECCCCCCCCeEEeCCCceeecCCCcEEEEEEEcc--C
Q psy574 244 ITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLAR-ASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG--E 320 (977)
Q Consensus 244 ~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~-~~l~V~~~~~~~pp~i~~~p~~~~v~~g~~~~L~C~~~~--~ 320 (977)
...++ .|.|.+++.+|+|.|+ |.|.|..|..... +.|.|... ..+|.+...|....+..|+.+.|.|.+.+ .
T Consensus 160 ~~~~~--~L~i~~~~~~d~G~Y~-C~a~n~~g~~~~~~~~l~v~~~--~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~ 234 (304)
T 2yd9_A 160 QLRSG--ALQIESSEETDQGKYE-CVATNSAGVRYSSPANLYVRVQ--NVAPRFSILPMSHEIMPGGNVNITCVAVGSPM 234 (304)
T ss_dssp ECTTS--CEEECSCCGGGCEEEE-EEEEETTEEEECCCEEEEEECC--CEEEEEEECCCCBCCCTTCCEEEEEEEEEESC
T ss_pred eCCCe--EEEEccCCcccCEEEE-EEEEeCCCCEEeccEEEEEEee--ccCCcEEecCCceEEcCCCeEEEEEEEeeeCC
Confidence 22234 8999999999999999 9999999876543 56666542 12677888888888999999999999998 7
Q ss_pred ceEEEEECCEEcCCCCcEEEecCceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEECCC
Q psy574 321 GSVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPT 382 (977)
Q Consensus 321 p~i~W~~~g~~l~~~~~~~~~~~~sl~I~~v~~~d~G~Y~C~a~n~~G~~~~s~~l~v~~~~ 382 (977)
|.+.|+++|..+....++. .....|.|.++ .|+|.|+|.|.|..|....++.|.|.+++
T Consensus 235 p~v~W~~~~~~l~~~~~~~-~~~~~L~i~~~--~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~ 293 (304)
T 2yd9_A 235 PYVKWMQGAEDLTPEDDMP-VGRNVLELTDV--KDSANYTCVAMSSLGVIEAVAQITVKSLP 293 (304)
T ss_dssp CEEEEEETTEECSCSSSCC-BSEEEEEECSC--CSCEEEEEEEEETTEEEEEEEEEC-----
T ss_pred CEEEEEECCEECCCccccc-CCcEEEEEccc--ccCEEEEEEEEeCCCcEEEEEEEEEecCc
Confidence 7899999999987664432 11223666555 58999999999999999999999987653
No 42
>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*
Probab=99.97 E-value=1.8e-30 Score=301.68 Aligned_cols=348 Identities=14% Similarity=0.231 Sum_probs=231.4
Q ss_pred ecccceEEeCCCcEEEEEECCCCCC--CCeEEEEeC--CE---Ee------------ecCCCceEEEecC-----cEEEE
Q psy574 10 VQPKSQRVAAGDTALLECGPPRGHP--EPTLVWKKN--GH---PI------------DFENSKRLRLVDG-----TNLAI 65 (977)
Q Consensus 10 ~~p~~~~v~~G~~v~L~C~~~~g~P--~~~v~W~k~--g~---~l------------~~~~~~r~~~~~~-----g~L~I 65 (977)
.+|..+.+.+|++++|.|.+ .+.| .+.|.|+|+ |. .+ .....+|+.+..+ .+|.|
T Consensus 5 ~~~~~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I 83 (457)
T 1hzh_H 5 VQSGAEVKKPGASVKVSCQA-SGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMEL 83 (457)
T ss_dssp EECCCEEECTTCCEEECEEE-ESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEE
T ss_pred ecCCceEEcCCCCEEEEEEe-cCccccCcEEEEEEeCCCCCcEEEEEEecCCCceecCccccCceEEEEeCCCCEEEEEE
Confidence 45677999999999999998 5655 678999984 32 11 0112467776532 37999
Q ss_pred cCCCCCCCeEEEEEEEecCc--------e---eeeEeEEEEEEc----CCeEEeCCCceEEeCCCeEEEEEEeccc-Cc-
Q psy574 66 QDSRKTDDGRYQCVVKNVAG--------T---RESTDAVLRVLV----KPYIIRGPKDTTVSASSIIVFECSVGGD-AV- 128 (977)
Q Consensus 66 ~~v~~~D~G~Y~C~a~n~~g--------~---~~s~~~~l~V~~----~P~~~~~p~~~~v~~G~~v~l~C~v~g~-p~- 128 (977)
.+++.+|+|.|+|.+.|..| . .....+.|.|.. +|.+...+....+.+|+.++|.|.+.|. |.
T Consensus 84 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~ 163 (457)
T 1hzh_H 84 RSLRSADTAVYYCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEP 163 (457)
T ss_dssp CSCCGGGCEEEEEEECCCCCSSCCTTTTCSCCBCCCCEEEEECSCCCBCCEEEEECCCSCCCTTCCEEEEEEEESBBSCC
T ss_pred CCCCcccCEEEEEEEecCCccccccccccccceECCcEEEEecCCCCCCCeEEecCccccccCCCcEEEEEEEeEEeCCC
Confidence 99999999999999998765 1 123446788865 5665554444457899999999999876 64
Q ss_pred eEEEEEECCeeCCCCceE--Eec------cceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEEe--------------
Q psy574 129 LTVHWKRLGSAMPEDRMS--VLP------SRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQ-------------- 186 (977)
Q Consensus 129 ~~i~W~k~~~~l~~~~~~--~~~------~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~-------------- 186 (977)
+.|.|+|++..+...... ... ...|.|.++..+| |.|+|.|.|..+.......+.+.
T Consensus 164 ~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 242 (457)
T 1hzh_H 164 VTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKAEPKSCDKTHTCPPCPAP 242 (457)
T ss_dssp CEEEETTTTBCTTEEEEEEEECTTSCEEEEEEEEECSGGGGT-SCCEEEEEEGGGTEEEEEECCCCCSCSSCSCCSCCCC
T ss_pred eEEEEEeCCEeccceEcCceECCCCCEEEEEEEEecccccCC-ceEEEEEEeCCCCcceeEEecccCCCcccccCCCCCc
Confidence 799999999765321111 111 2379999999999 99999999987765544444432
Q ss_pred ---eCCeE-EecCCCcE-EeeCCeEEEEEEEecCCCC----eEEEEEcCeeeeecCCCccccEEEEEccCCceEEEEe--
Q psy574 187 ---MAPIV-RERPSDLR-LEVGRDAVFLCGIEGSPPP----STFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQ-- 255 (977)
Q Consensus 187 ---~~p~~-~~~p~~~~-v~~G~~v~L~C~~~g~p~~----~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~s~L~I~-- 255 (977)
.+|.+ ...|.... +.+|+.++|.|.+.|.+++ .|.|+|++..+.. ..........+| .|.+.
T Consensus 243 ~~~~~p~v~~~~p~~~~~~~~G~~v~L~C~~~g~~p~p~~~~i~W~k~~~~~~~-----~~~~~~~~~~~g--~~~~~~~ 315 (457)
T 1hzh_H 243 ELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHN-----AKTKPREEQYNS--TYRVVSV 315 (457)
T ss_dssp CCSSSCEEEEECCCHHHHHCTTSCCCEEEEEECCCTTCCCCEEEEEETTEEECC-----CEEEEEEECTTS--CEEEEEE
T ss_pred cccCCceEEeECcCchhhcccCCceEEEEEEEcccCCCCceEEEEEeCCccccc-----cccccceecCCC--cEEEEEE
Confidence 24555 33333333 6789999999999998653 9999999987631 111111112233 33333
Q ss_pred ----ecccCCCCeEEEEEEEcCCCceeEEEEEEEECCCCCCCCeEEe-CCCceeecCCCcEEEEEEEcc--Cc--eEEEE
Q psy574 256 ----NVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILF-GPANQTLPLRSEARLRCQVRG--EG--SVQWW 326 (977)
Q Consensus 256 ----~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~~~~~~pp~i~~-~p~~~~v~~g~~~~L~C~~~~--~p--~i~W~ 326 (977)
.....|.|.|+ |.|.|..+.......+.+.. ....+|.+.. .+....+..|+ +.|.|.+.+ ++ .|.|+
T Consensus 316 l~i~~~d~~d~G~Y~-C~a~n~~~~~~~~~~v~~~~-~~~~~P~v~~~~~~~~~~~~~~-~~l~C~~~g~~p~~~~v~W~ 392 (457)
T 1hzh_H 316 LTVLHQDWLNGKEYK-CKVSNKALPAPIEKTISKAK-GQPREPQVYTLPPSRDELTKNQ-VSLTCLVKGFYPSDIAVEWE 392 (457)
T ss_dssp ECCCHHHHHHTCCEE-EEEECTTSSSCEEEEECCCC-CCCBCCEEEEECCCGGGGGSSE-EEEEEEEEEEBSSCCEEEEE
T ss_pred EEECHHHccCCCcEE-EEEeCCCCCCcceEEEEccc-CCCCCCeEEEECCCccccCCCc-EEEEEEEEeEECCCCEEEEE
Confidence 33334499999 99998766554444443211 1122555543 34444455566 999999998 33 89999
Q ss_pred ECCEEcCCC--CcEEEecCce------EEEeccCCCCCeEEEEEEEcCCCc
Q psy574 327 RGEREVGSG--PRVNVTGDGS------LVLTDVTKEDSGEYTCVVKSPHGS 369 (977)
Q Consensus 327 ~~g~~l~~~--~~~~~~~~~s------l~I~~v~~~d~G~Y~C~a~n~~G~ 369 (977)
++|..+... .+.....+++ |.|......|.|.|+|.|.|....
T Consensus 393 k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~YtC~a~n~~l~ 443 (457)
T 1hzh_H 393 SNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALH 443 (457)
T ss_dssp ETTEECCCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred ECCEECcceeecCceeCCCCCEEEEEEEEEChHHccCCCeEEEEEEECCCC
Confidence 999988543 1222234443 444555446799999999997654
No 43
>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens}
Probab=99.97 E-value=7.5e-32 Score=324.06 Aligned_cols=445 Identities=14% Similarity=0.158 Sum_probs=296.2
Q ss_pred ecCCCcEEeeCCeEEEEEEEe-------cCCCCeEEEEEcCeeeeecCCCccccEEEEEccCCceEEEEeecccCCCCeE
Q psy574 193 ERPSDLRLEVGRDAVFLCGIE-------GSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLI 265 (977)
Q Consensus 193 ~~p~~~~v~~G~~v~L~C~~~-------g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y 265 (977)
+.|.+..+..|++++|.|.+. +.+.+.|.|+++|..+.. ..+.+.. +..+.|+|.++...|.+ |
T Consensus 8 i~p~~~~v~~G~~v~l~C~~~~~~~~~~~~~~~~i~W~~~~~~i~~------~~~~~~~--~~~~~l~i~~~~~~~~~-y 78 (589)
T 3l5h_A 8 ISPESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPK------EQYTIIN--RTASSVTFTDIASLNIQ-L 78 (589)
T ss_dssp CSCSCCCCCSSSCCCCCC-CCTTTTTTTTCCTTTCCCBCSSSBSCG------GGCBCCS--SSCCBCCCCCCCSSCCC-C
T ss_pred EecCCCEEeCCCCEEEEEEEeCccCccccccccceEEEeCCEECCh------HHccccC--CcEeEEEEecCCCccee-e
Confidence 467788899999999999997 667789999999865521 1222221 23458999999988765 7
Q ss_pred EEEEEEcCCC--ceeEEEEEEEECCCCCCCCeEEeCCCceeecCCCcEEEEEEEcc--CceEEEEECCEEcCCCCcEEEe
Q psy574 266 ILCLGVNAAG--SDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG--EGSVQWWRGEREVGSGPRVNVT 341 (977)
Q Consensus 266 ~~C~a~n~~g--~~~~~~~l~V~~~~~~~pp~i~~~p~~~~v~~g~~~~L~C~~~~--~p~i~W~~~g~~l~~~~~~~~~ 341 (977)
+ |.+..... .....+.|.|.. ..+...+|.|.... ...+.|........ ...+.+.
T Consensus 79 ~-C~~~~~~~~~~~~~~~~l~v~~------------------pP~~P~nl~c~~~~~~~~~~~W~~~~~~~~-~~~y~l~ 138 (589)
T 3l5h_A 79 T-CNILTFGQLEQNVYGITIISGL------------------PPEKPKNLSCIVNEGKKMRCEWDGGRETHL-ETNFTLK 138 (589)
T ss_dssp C-CC-CCTTCC-CCCCCCCCCC-C------------------CCCCCEEEEEEEETTSCEEEEEECCSCCSS-CEEEEEC
T ss_pred E-EecccCCCcccEEEeEEEeccC------------------CCCCCEeeEEEECCCceEEEEECCCCcCCc-CceEEEE
Confidence 7 66543111 112222333322 12345678888877 56788876432110 0111110
Q ss_pred --------------c--CceEEEe-ccCCCCCeEEEEEEEcCCCceEEEEEEEEECCCCCCCcccCCCCCCCCCCCCCCC
Q psy574 342 --------------G--DGSLVLT-DVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKP 404 (977)
Q Consensus 342 --------------~--~~sl~I~-~v~~~d~G~Y~C~a~n~~G~~~~s~~l~v~~~~~~~~~~~~~~~~~~~p~~P~~~ 404 (977)
. ..++.+. ++.....+.|+|.|.|..|.... ..+.+. ......|.||.++
T Consensus 139 ~~~~~~~~~~c~~~~~~~~~c~~~~~l~~~~~Y~~~v~a~n~~G~~~s-~~~~~~------------~~~~~~p~pP~~~ 205 (589)
T 3l5h_A 139 SEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTS-DHINFD------------PVYKVKPNPPHNL 205 (589)
T ss_dssp CBCSSSBCCCEECBTTBSSCCBCCSCCCSSSCEEECEEEEESSCCBCC-CCEEEC------------GGGSEECCCCCSC
T ss_pred EEEcCCCcccCCCCCCCcEEEEECCCCchheeEEEEEEEEeCCCCccc-ccEEEc------------cccEEEcCCCceE
Confidence 0 1235555 56677789999999999997532 122221 1112468999999
Q ss_pred eEE--eeCCCceEEEEEcCCCCCCcccceEEEEEeecCCCCCCCCCCCCcccEEEec---eecCcCeEEEEccCCCCeEE
Q psy574 405 TLV--NQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVA---TNVPSPILTVTNLTVGLTYT 479 (977)
Q Consensus 405 ~v~--~~~~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~---~~~~~~~~~i~~L~p~t~Y~ 479 (977)
.+. ..+.+++.|+|.+|.. .++.+..|.|+|+..... .|.... ......++.+.+|.|++.|.
T Consensus 206 ~~~~~~~~~~~v~l~W~~p~~-~~~~~~~Y~v~~~~~~~~-----------~w~~~~~~~~~~~~~~~~i~~L~p~t~Y~ 273 (589)
T 3l5h_A 206 SVINSEELSSILKLTWTNPSI-KSVIILKYNIQYRTKDAS-----------TWSQIPPEDTASTRSSFTVQDLKPFTEYV 273 (589)
T ss_dssp EEECTTTCTTCEEEECCCCGG-GGTSCEEEEEEEEETTCS-----------CCBCCCTTSSCSCCSEEEECSCCSSCCEE
T ss_pred EEEecCCCCCeEEEEeCCCCC-CCeeeEEEEEEECCCCCC-----------CcEEEccccCcCceeEEEECCCCCCCEEE
Confidence 884 4678899999998876 456789999999987543 576553 23356889999999999999
Q ss_pred EEEEEEcCCCCCCCCCCCceEEeeccccccccccCCcceeecCCCCCCCcchHHHHhhcccccCCceEEEEEe-eEeCCC
Q psy574 480 FLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEV-KPMTST 558 (977)
Q Consensus 480 ~~V~a~n~~G~s~~S~~s~~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~g~~~~~~~~~l~~~~~~~~~~l~~-~~~~~t 558 (977)
|+|+|.|..|.|.+|.++..+.... .+..|. .| +..+..+.+ ...+.+
T Consensus 274 ~~V~a~~~~g~g~~S~~S~~~~~~T--~~~~P~---------~~--------------------p~~~~~v~~~~~~~~~ 322 (589)
T 3l5h_A 274 FRIRCMKEDGKGYWSDWSEEASGIT--YEDRPS---------KA--------------------PSFWYKIDPSHTQGYR 322 (589)
T ss_dssp EEEEEEESSSCSCCCCCCCCBCCCC--CCCCCC---------SC--------------------CCEEEECCSCSSTTSC
T ss_pred EEEEEEeCCCCCccCCCCCcccccc--CccCCC---------CC--------------------CcEEEEeecCcCCCcc
Confidence 9999999999998887777654411 111221 01 111122222 356789
Q ss_pred eEEEEEEec----CCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeecceeCCCCCceEE
Q psy574 559 SVKLTWEIL----NTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLRAV 634 (977)
Q Consensus 559 sv~lsW~~p----~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~g~~s~~~~~ 634 (977)
+|.|+|+++ .++.+.+|+|+|+..+. .+.. .....+.+++ |.+++.|.|+|+|.|..|.|+.+.. .+
T Consensus 323 ~v~l~W~p~~~~~~~g~i~~Y~v~~~~~~~--~~~~----~~~~~~~~~~--l~~~~~Y~~~V~A~n~~G~~~~s~~-~~ 393 (589)
T 3l5h_A 323 TVQLVWKTLPPFEANGKILDYEVTLTRWKS--HLQN----YTVNATKLTV--NLTNDRYLATLTVRNLVGKSDAAVL-TI 393 (589)
T ss_dssp CEEEEECCCCTTTSSSCCCEEEEEECCTTS--CCCB----CCCSSSCCEE--CCCSSCCCEEEEEEBTTBCCCCCCC-CC
T ss_pred eEEEEEeeCCchhccCceeeEEEEEecCCC--Ccee----eccCCceEEE--EeCCCCEEEEEEEEeCCccCCCeEE-Ee
Confidence 999999974 57789999999987663 2221 1123344554 8999999999999999999988864 34
Q ss_pred eccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCcc---eEEEEecC-CcCeEEecCCCCCc
Q psy574 635 RTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSA---LINMTVSA-STPTLLLTNLSAGI 710 (977)
Q Consensus 635 ~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~~---~~~~~~~~-~~~~~~l~~L~p~t 710 (977)
.+....|+.||.++.+... ++++.|+|++|. . .+.+|.|+|+..+... .....+.. ....+++.+|+|++
T Consensus 394 ~~~~~~~~~p~~~l~~~~~-~~si~l~W~~p~--~---~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t 467 (589)
T 3l5h_A 394 PACDFQATHPVMDLKAFPK-DNMLWVEWTTPR--E---SVKKYILEWCVLSDKAPCITDWQQEDGTVHRTYLRGNLAESK 467 (589)
T ss_dssp CCTTCCCCSCCCSCEEEEC-SSSEEEECCCCS--S---CCSCBCCEEEEECSSSCCCEEECCBCSSCCEEECCSCCCSSS
T ss_pred ecccccCCCCcceEEEEEC-CCeEEEEEECCC--C---CccEEEEEEEECCCCCCCccCcEEeeCCcceEEehhccccCc
Confidence 4443345557778887765 689999999984 2 6889999998854211 11122233 34456679999999
Q ss_pred eEEEEEEEEcCCCcCCCCCceEEeecCC
Q psy574 711 RYSVSLAATNRAGTGPYSRPALLSLTSG 738 (977)
Q Consensus 711 ~Y~~~V~A~~~~G~g~~S~~~~~~t~~~ 738 (977)
.|.|+|+|+|..|.|..+. +.+.|...
T Consensus 468 ~Y~~~V~A~~~~g~g~~~~-~~~~t~~~ 494 (589)
T 3l5h_A 468 CYLITVTPVYADGPGSPES-IKAYLKQA 494 (589)
T ss_dssp EEEEEECBEETTEECCCEE-EEEESSCC
T ss_pred EEEEEEEEEeCCcccCCEE-EEEEeccC
Confidence 9999999999999998764 55555443
No 44
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Probab=99.97 E-value=1.4e-29 Score=277.16 Aligned_cols=288 Identities=24% Similarity=0.373 Sum_probs=238.0
Q ss_pred eCCeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCccccEEEEEccCCceEEEEeecccCCCCeEE
Q psy574 187 MAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLII 266 (977)
Q Consensus 187 ~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~ 266 (977)
.+|.|...|.+..+.+|+.++|.|.+.+.|.+.+.|++++..+.. ...++.+....++.+.|.|.+++.+|+|.|+
T Consensus 3 ~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~----~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~ 78 (305)
T 2nzi_A 3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIA----DGLKYRIQEFKGGYHQLIIASVTDDDATVYQ 78 (305)
T ss_dssp CCCEEEECCCCEEECTTCCEEEEEEEECSSCCEEEEEETTEECCC----CSSSEEEEEETTTEEEEEESSCCGGGCSEEE
T ss_pred CCCeeeecccceEEeCCCcEEEEEEEeCCCCCeEEEEECCEEccc----CCCeEEEEECCCCEEEEEEccCChhhCeEEE
Confidence 478888899999999999999999999999999999999987642 2345665554456679999999999999999
Q ss_pred EEEEEcCCCceeEEEEEEEECCCCCCCCeEEeCCCceeecCCCcEEEEEEEcc--CceEEEEECCEEcCCCCcEEEe---
Q psy574 267 LCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG--EGSVQWWRGEREVGSGPRVNVT--- 341 (977)
Q Consensus 267 ~C~a~n~~g~~~~~~~l~V~~~~~~~pp~i~~~p~~~~v~~g~~~~L~C~~~~--~p~i~W~~~g~~l~~~~~~~~~--- 341 (977)
|.|.|..|.....+.|.|...+....|.....+....+..|+.+.|.|.+.+ .+.+.|++++..+....++.+.
T Consensus 79 -C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~ 157 (305)
T 2nzi_A 79 -VRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTR 157 (305)
T ss_dssp -EEEEETTEEEEEEEEEEECEEEEECCCHHHHSSCCEEEETTCCEEEEEEEEEESCCEEEEEESSSBCCSSSSCEEEECS
T ss_pred -EEEEcCCCCccceEEEEEecCCccCCCccccccccEEecCCCEEEEEEEECCCCCCEEEEEECCEECCCCCcEEEEEcC
Confidence 9999999988888899987622111122222345677889999999999999 7789999999988777666554
Q ss_pred cCceEEEec-cCCCCCeEEEEEEEcCCCceEEEEEEEEECCCCCCCcccCCCCCCCCCCCCCCCeEEeeCCCceEEEEEc
Q psy574 342 GDGSLVLTD-VTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGLTLAWSR 420 (977)
Q Consensus 342 ~~~sl~I~~-v~~~d~G~Y~C~a~n~~G~~~~s~~l~v~~~~~~~~~~~~~~~~~~~p~~P~~~~v~~~~~~sv~lsW~~ 420 (977)
..++|.|.+ +...|.|.|+|.|.|..|....++.|.|. ..|.+|.++.+.....+++.|+|.+
T Consensus 158 ~~~~l~i~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~----------------~~P~~p~~~~~~~~~~~~v~l~w~~ 221 (305)
T 2nzi_A 158 SFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVA----------------DVPDPPRGVKVSDVSRDSVNLTWTE 221 (305)
T ss_dssp SEEEEEETTCCCSTTCEEEEEEEEETTEEEEEEEEEEEE----------------BCCCCCEEEEEESCCSSCEEEEEEC
T ss_pred CceEEEEecCCccCccEEEEEEEEeCCCceeeEEEEEEe----------------cCCCCCCCceeeeccCCEEEEEEcC
Confidence 335799999 99999999999999999999999999987 3478888888888899999999999
Q ss_pred CCCCCCcccceEEEEEeecCCCCCCCCCCCCcccEEEeceecCcCeEEEEccCCCCeEEEEEEEEcCCCCCCCCCCCceE
Q psy574 421 NNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEI 500 (977)
Q Consensus 421 p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~G~s~~S~~s~~~ 500 (977)
|...++..+..|.|+++..... .|...... ....+.|.+|.+++.|.|+|+|.|..|.+.+|..+..+
T Consensus 222 p~~~g~~~i~~y~v~~~~~~~~-----------~w~~~~~~-~~~~~~i~~l~~~~~y~~~~~A~N~~G~~~~S~~~~~~ 289 (305)
T 2nzi_A 222 PASDGGSKITNYIVEKCATTAE-----------RWLRVGQA-RETRYTVINLFGKTSYQFRVIAENKFGLSKPSEPSEPT 289 (305)
T ss_dssp CSCCSBSCEEEEEEEEEETTSC-----------CEEEEEEE-SSSEEEECSCCSSCEEEEEEEEEETTEECCCCCCCCCE
T ss_pred CccCCCCceeEEEEEEecCCCC-----------ccEECccc-cCceEEecCCCCCCeEEEEEEEEeCCcccCCcCCCCCE
Confidence 8776778899999999876543 79877643 37789999999999999999999999999999999888
Q ss_pred Eeecccc
Q psy574 501 VLRGTFS 507 (977)
Q Consensus 501 ~~~~~~p 507 (977)
+++...|
T Consensus 290 ~t~~~~p 296 (305)
T 2nzi_A 290 ITKEDKT 296 (305)
T ss_dssp ECCC---
T ss_pred EcCCccc
Confidence 8744333
No 45
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A
Probab=99.97 E-value=4.2e-30 Score=291.03 Aligned_cols=262 Identities=24% Similarity=0.416 Sum_probs=219.1
Q ss_pred ccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEe-cCcEEEEcCCCCCCCeEEEEEEEecCcee---
Q psy574 12 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV-DGTNLAIQDSRKTDDGRYQCVVKNVAGTR--- 87 (977)
Q Consensus 12 p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~-~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~--- 87 (977)
+..+.+.+|++++|.|.+..+.|.+.|.|+|++..+....+.+..+. .++.|.|.+++.+|+|.|+|.+.|..|..
T Consensus 108 ~~~~~v~~G~~v~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~ 187 (382)
T 1cs6_A 108 RDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKS 187 (382)
T ss_dssp CCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEECTTTCCEEESSCCGGGCEEEEEEEEEEETTEEEE
T ss_pred CCceEEecCCcEEEEeCCCCCCCCcEEEEEECCCccccccCceEEEecCceEEEEEeeCcccCeeEEEEEEEccccccce
Confidence 55688999999999998756788999999999987644444454444 45789999999999999999999876422
Q ss_pred -eeEeEEEEEEc------CCeEEe-CCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceEEeccceEEEccCc
Q psy574 88 -ESTDAVLRVLV------KPYIIR-GPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVR 159 (977)
Q Consensus 88 -~s~~~~l~V~~------~P~~~~-~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~ 159 (977)
.+..+.|.|.. +|.+.. .|....+.+|+.+.|.|.+.|.|.+.+.|+|++..+... .......|.|.+++
T Consensus 188 ~~s~~~~l~v~~~~~~~~~P~~~~~~~~~~~~~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~--~~~~~~~L~i~~~~ 265 (382)
T 1cs6_A 188 VFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSK--WLSSEPLLHIQNVD 265 (382)
T ss_dssp EECCCEEEEEESCCCCCEEEEEEECCCSEEEEETTCCEEEECEEEEESCCEEEEEECCSCCSCC--CSBSSSEEEECSCC
T ss_pred eEccceeeccchhhcccCCCceeccCCCceEEeCCCeEEEEEEEccCCCCEEEEEECCcccccE--EecCCcEEEEccCC
Confidence 23345566542 455554 466788999999999999999999999999998877541 12256789999999
Q ss_pred cCCCeEEEEEEEeCCeeEEEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCcccc
Q psy574 160 LEDAGEYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDN 239 (977)
Q Consensus 160 ~~D~G~Y~C~a~n~~g~~~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~ 239 (977)
.+|+|.|+|.|.|..|.....+.|.|..+|.+...+....+.+|+.++|.|.+.|.|.+.+.|+++|..+. ...+
T Consensus 266 ~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~-----~~~~ 340 (382)
T 1cs6_A 266 FEDEGTYECEAENIKGRDTYQGRIIIHAQPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLA-----SQNR 340 (382)
T ss_dssp GGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEECCCCEEEETTCCEEEECEEEEESCCEEEEEETTEECC-----CCSS
T ss_pred hhhCEEEEEEEEcCCCeEEEEEEEEEecCCCcccCCCccEEcCCCeEEEEEEeeeecCCEEEEEECCEECC-----CCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999998764 2345
Q ss_pred EEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEE
Q psy574 240 IQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVS 286 (977)
Q Consensus 240 ~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~ 286 (977)
+.+. ++ .|.|.++..+|+|.|+ |.|.|..|....++.|.|.
T Consensus 341 ~~~~---~~--~L~i~~v~~~d~G~Y~-C~a~N~~G~~~~~~~l~V~ 381 (382)
T 1cs6_A 341 IEVS---GG--ELRFSKLVLEDSGMYQ-CVAENKHGTVYASAELTVQ 381 (382)
T ss_dssp EEEE---TT--EEEESSCCGGGCEEEE-EEEEETTEEEEEEEEEEEE
T ss_pred EEEE---CC--EEEECcCCcccCEEEE-EEEEeCCCeEEEEEEEEEe
Confidence 5543 24 8999999999999999 9999999999999999886
No 46
>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A
Probab=99.97 E-value=9.5e-29 Score=288.46 Aligned_cols=349 Identities=17% Similarity=0.259 Sum_probs=235.1
Q ss_pred ceecccceEEeCCCcEEEEEECCCCCC--CCeEEEEeC--CEE---ee------------cCCCceEEEecC-----cEE
Q psy574 8 FRVQPKSQRVAAGDTALLECGPPRGHP--EPTLVWKKN--GHP---ID------------FENSKRLRLVDG-----TNL 63 (977)
Q Consensus 8 ~~~~p~~~~v~~G~~v~L~C~~~~g~P--~~~v~W~k~--g~~---l~------------~~~~~r~~~~~~-----g~L 63 (977)
..++|..+.+.+|++++|.|.+ .+.+ .+.|.|+|+ |+. +. ....+|+.+..+ .+|
T Consensus 4 ~~~~p~~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L 82 (475)
T 1iga_A 4 LLEQSGAEVKKPGASVKVSCKA-SGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYM 82 (475)
T ss_pred eeccCCcEEEeCCCCEEEEEEe-cCCCCCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEcCCCCeEEE
Confidence 3567888999999999999998 5543 678999995 221 10 112457776532 479
Q ss_pred EEcCCCCCCCeEEEEEEEecCce-----eeeEeEEEEEEc----CCeEEeCCCceEEeCCCeEEEEEEeccc-Cc-e-EE
Q psy574 64 AIQDSRKTDDGRYQCVVKNVAGT-----RESTDAVLRVLV----KPYIIRGPKDTTVSASSIIVFECSVGGD-AV-L-TV 131 (977)
Q Consensus 64 ~I~~v~~~D~G~Y~C~a~n~~g~-----~~s~~~~l~V~~----~P~~~~~p~~~~v~~G~~v~l~C~v~g~-p~-~-~i 131 (977)
.|.+++.+|+|.|+|.+.+..|. .....+.|.|.. +|.+...+.. .+.+|+.++|.|.+.|. |. + .|
T Consensus 83 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~-~~~~g~~v~L~C~~~g~~P~~p~~v 161 (475)
T 1iga_A 83 GLSSLRPEDTAVYYCARDPYGGGKSEFDYWGQGTLVTVSSASPTSPKVFPLSLC-STQPDGNVVIACLVQGFFPQEPLSV 161 (475)
T ss_pred EECCCChhhCEEEEEEEeccCCCccceeeecCceEEEeccCCCcCCeEEecCcc-ccCCCCeEEEEEEEeeecCCCceEE
Confidence 99999999999999999987652 123445777763 4555544322 23789999999999886 65 4 99
Q ss_pred EEEECCeeCCCCc---------eEEeccceEEEccCccCCCeEEEEEEEeCCee-EEEEEEEEEe---------------
Q psy574 132 HWKRLGSAMPEDR---------MSVLPSRSLQLSDVRLEDAGEYVCEAENAVGK-ISASATLTVQ--------------- 186 (977)
Q Consensus 132 ~W~k~~~~l~~~~---------~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~-~~~~~~L~V~--------------- 186 (977)
.|++++....... ........|.|..+..+|+|.|+|.|.|..+. .+..+.|.|.
T Consensus 162 ~W~~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~~v~l~V~~~~~~~~~~~~~~~~ 241 (475)
T 1iga_A 162 TWSESGQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPSQDVTVPCPVPSTPPTPSPSTPPTPS 241 (475)
T ss_pred EEcCCCcccceEeCCceecCCCCcEEEEEEEEechhHcCCCceEEEEEEECCCCceeeeEecccccCcccccccccccCC
Confidence 9999875322100 01111236889899999999999999998764 2333443331
Q ss_pred ---eCCeE-EecCCCcEEeeCCeEEEEEEEecCCC---CeEEEEEcCeeeeecCCC-----ccccEEEEEccCCceEEEE
Q psy574 187 ---MAPIV-RERPSDLRLEVGRDAVFLCGIEGSPP---PSTFWMLEGNRSLIYPGD-----RVDNIQAEITSDGMNLLKI 254 (977)
Q Consensus 187 ---~~p~~-~~~p~~~~v~~G~~v~L~C~~~g~p~---~~i~W~~~g~~~~~~~~~-----~~~~~~~~~~~~g~s~L~I 254 (977)
.+|.+ ...|....+.+|+.++|.|.+.|.++ +.|.| ++..+...... ..+.+. ..+.|.|
T Consensus 242 ~~~~~p~v~~~~p~~~~~~~G~~v~L~C~~~g~~p~~~~~i~W--~~~~~~~~~~~~~~~~~~g~~~------~~~~L~I 313 (475)
T 1iga_A 242 PSCCHPRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTW--TPSSGKSAVQGPPERDLCGCYS------VSSVLPG 313 (475)
T ss_pred CCCCCcEEEEcCCChHHhccCCceEEEEEEEcccCCCceEEEE--CCCCcCCccccCceECCCCCEE------EEEEEEE
Confidence 24554 33344445689999999999998754 58999 44433211000 011111 1248999
Q ss_pred eecccCCCCeEEEEEEEcCCCceeEEEEEEEECCCCCCCCeEEe-CCCceeecCCCcEEEEEEEcc--C--ceEEEEECC
Q psy574 255 QNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILF-GPANQTLPLRSEARLRCQVRG--E--GSVQWWRGE 329 (977)
Q Consensus 255 ~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~~~~~~pp~i~~-~p~~~~v~~g~~~~L~C~~~~--~--p~i~W~~~g 329 (977)
.+++.+|.|.|+ |.|.|..+.......|.+.. ...+|.+.. .+....+..|+.+.|.|.+.+ + +.|.|+++|
T Consensus 314 ~~~~~~d~G~Y~-C~a~n~~~~~~~~~~v~~~~--~~~~P~v~~~~~~~~~v~~g~~~~L~C~~~g~~P~~~~v~W~k~g 390 (475)
T 1iga_A 314 CAEPWNHGKTFT-CTAAYPESKTPLTATLSKSG--NTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGS 390 (475)
T ss_pred chHHhccCCcEE-EEEEcCCCCCceEEEeecCC--CCCCCeEEEECCChHHhccCCceEEEEEEeeeECCCCEEEEEECC
Confidence 999999999999 99999998865555554321 122555543 444445778999999999998 2 389999999
Q ss_pred EEcCCCCcE----EEe---cCc------eEEEeccCCCCCeEEEEEEEcCCCc
Q psy574 330 REVGSGPRV----NVT---GDG------SLVLTDVTKEDSGEYTCVVKSPHGS 369 (977)
Q Consensus 330 ~~l~~~~~~----~~~---~~~------sl~I~~v~~~d~G~Y~C~a~n~~G~ 369 (977)
..+...... ... .++ .|.|......|.|.|+|.|.|....
T Consensus 391 ~~l~~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~~~g~YtC~a~n~~l~ 443 (475)
T 1iga_A 391 QELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEALP 443 (475)
T ss_pred EECCCCceeecccccccCCCCCcEEEEEEEEEChHHhcCCCEEEEEEEcCCCC
Confidence 988654211 112 233 3556666667899999999997654
No 47
>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}
Probab=99.97 E-value=1.5e-30 Score=286.35 Aligned_cols=272 Identities=21% Similarity=0.275 Sum_probs=213.7
Q ss_pred cccceecccceEEeCCCcEEEEEECCCCC-CCCeEEEEeCCEEeecCCCceEEEec-CcEEEEcCCCCCCCeEEEEEEEe
Q psy574 5 REEFRVQPKSQRVAAGDTALLECGPPRGH-PEPTLVWKKNGHPIDFENSKRLRLVD-GTNLAIQDSRKTDDGRYQCVVKN 82 (977)
Q Consensus 5 ~~~~~~~p~~~~v~~G~~v~L~C~~~~g~-P~~~v~W~k~g~~l~~~~~~r~~~~~-~g~L~I~~v~~~D~G~Y~C~a~n 82 (977)
.|.|. .|.++.+.+|++++|.|.+ .+. |.+.|.|+|||..+... .++.+.. ++.|.|.+++.+|+|.|+|.+.|
T Consensus 7 ~P~~~-~~~~~~v~~G~~v~l~C~~-~~~~p~~~v~W~~~~~~~~~~--~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n 82 (317)
T 2y25_A 7 GPHFV-EYLSWEVTGECNVLLKCKV-ANIKKETHIVWYKDEREISVD--EKHDFKDGICTLLITEFSKKDAGIYEVILKD 82 (317)
T ss_dssp CCEEE-EEEEEEEETTTEEEEEEEE-ESCCTTCEEEEEETTEEECCS--CC-----CCEEEEETTCCSTTCSCEEEEEES
T ss_pred CCcEe-eeeeEEECCCCeEEEEEEE-cCCCCCCEEEEEECCeEcCCC--CcEEEECCeEEEEEccCCcccCeEEEEEEEC
Confidence 45665 5667999999999999998 454 88999999999999533 3444443 35899999999999999999999
Q ss_pred cCceeeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEecc----------cCceEEEEEECCeeCCC-CceEEecc-
Q psy574 83 VAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGG----------DAVLTVHWKRLGSAMPE-DRMSVLPS- 150 (977)
Q Consensus 83 ~~g~~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~g----------~p~~~i~W~k~~~~l~~-~~~~~~~~- 150 (977)
..|... ..+.|.|..+|.+...+....+.+|+.+.|.|.+.+ .|.+.+.|++++..+.. .++.+...
T Consensus 83 ~~g~~~-~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~l~c~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~ 161 (317)
T 2y25_A 83 DRGKDK-SRLKLVDEAFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTG 161 (317)
T ss_dssp SSCEEE-EEECCSTHHHHHHHHHHHHHHHTCBCCCEEEECSSEEEEEEEBSSCCSSCEEEEEESSSBCCCCSSEEEEECS
T ss_pred CCCcEE-EEEEEEEecCccccccCCceecccCCCeEEEeeccccEEEEEeccCCCCcEEEEEECCEECCCCCCeEEeccC
Confidence 888643 445666665555554455556677888888887766 78999999999998865 34444322
Q ss_pred --ceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEEee--------------------CCeEEe-cCCCcEEeeCCeEE
Q psy574 151 --RSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQM--------------------APIVRE-RPSDLRLEVGRDAV 207 (977)
Q Consensus 151 --~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~~--------------------~p~~~~-~p~~~~v~~G~~v~ 207 (977)
..|.|.+++.+|+|.|+|.|.|..|.....+.|.|.. +|.+.. .|....+.+|+.++
T Consensus 162 ~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~ 241 (317)
T 2y25_A 162 EQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALN 241 (317)
T ss_dssp SEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTTSCEEEEBCCSEEEEETTSBBC
T ss_pred CEEEEEECcCCcccCeeEEEEEEeCCceEEEEEEEeeeeccccchhhcccCCcccCcCCCCcccccCCccEEEEcCCEEE
Confidence 3599999999999999999999999888888887642 344444 35567899999999
Q ss_pred EEEEEecCCCCeEEEEEcCeeeeecCCCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEEC
Q psy574 208 FLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSG 287 (977)
Q Consensus 208 L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~ 287 (977)
|.|.+.|.|.+.+.|+++|..+. ...++.+....++.+.|.|.+++.+|+|.|+ |.|.|..|.....+.|.|..
T Consensus 242 l~C~~~g~p~p~i~W~~~g~~~~-----~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~-C~a~N~~g~~~~~~~l~V~~ 315 (317)
T 2y25_A 242 LTCNVWGDPPPEVSWLKNEKALA-----SDDHCNLKFEAGRTAYFTINGVSTADSGKYG-LVVKNKYGSETSDFTVSVFI 315 (317)
T ss_dssp EEEEEECSSCCEEEEEESSSEEC-----CCSSEEECCBTTTEEEEEEBSCCSTTCEEEE-EEEEETTEEEEEEEEEEEEC
T ss_pred EEEEEecCCCCEEEEEECCEeCC-----CCCcEEEEEcCCCEEEEEECCCCHHHCEEEE-EEEEeCCCeEEEEEEEEEEc
Confidence 99999999999999999998773 3345555543344579999999999999999 99999999999999999886
No 48
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*
Probab=99.97 E-value=7.5e-30 Score=291.21 Aligned_cols=268 Identities=24% Similarity=0.442 Sum_probs=221.7
Q ss_pred cccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCC-CeEEEEEEEecCceee-
Q psy574 11 QPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTD-DGRYQCVVKNVAGTRE- 88 (977)
Q Consensus 11 ~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D-~G~Y~C~a~n~~g~~~- 88 (977)
.+..+.+.+|+.++|.|.+..+.|.+.+.|+|++... .....++.+..++.|.|.+++.+| +|.|+|.+.|..+...
T Consensus 122 ~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~-~~~~~~~~~~~~~~l~i~~v~~~d~~G~Y~C~a~n~~~~~~~ 200 (404)
T 3p3y_A 122 NLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEP-ITQDKRVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQ 200 (404)
T ss_dssp CCCCEEEETTSCEEECCCCCCCSSCCEEEEECTTSCB-CCCCSSEEECTTSCEEESSCCSGGGSSCBEEEEECTTTCCEE
T ss_pred CCCCeEEccCCcEEEEeCCCCCCCCCeEEEeCCCccc-cCCCCcEEEcCCCcEEEEeeeeccCCcceEEEEEecccccee
Confidence 3455889999999999998788999999999988655 334567888888999999999999 5999999999876533
Q ss_pred -eEeEEEEEEc-------CCeEEeCC---CceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceEEe-ccceEEEc
Q psy574 89 -STDAVLRVLV-------KPYIIRGP---KDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVL-PSRSLQLS 156 (977)
Q Consensus 89 -s~~~~l~V~~-------~P~~~~~p---~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~-~~~~L~I~ 156 (977)
+..+.|.|.. +|.+...+ ....+.+|+++.|.|.+.|.|.+.+.|+|++..+........ .++.|.|.
T Consensus 201 ~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~L~i~ 280 (404)
T 3p3y_A 201 QKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFENFNKALRIT 280 (404)
T ss_dssp ECCCBCEEEECCSCCCCCCCCBSSSCSSEEEEEEETTSCEEEECCBCCSSCCEEEEEETTBCCCTTTEEEEGGGTEEEES
T ss_pred ccCceeEEEeccCCccccCCccccccCCCCCceEecCCCEEEEEEECCCCCCcEEEEECCEECCCCcccccccCceEEEc
Confidence 2334566653 23333322 345789999999999999999999999999999876654443 46789999
Q ss_pred cCccCCCeEEEEEEEeCCeeEEEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCc
Q psy574 157 DVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDR 236 (977)
Q Consensus 157 ~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~ 236 (977)
+++.+|+|.|+|.|.|..|..+..+.|.|..+|.+...+.+..+.+|+.++|.|.+.|.|.+.+.|+++|..+.... .
T Consensus 281 ~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~--~ 358 (404)
T 3p3y_A 281 NVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAP--P 358 (404)
T ss_dssp SCCGGGCEEEEEEEECSSCEEEEEEEEEEEEEEEEEECCCCEEECTTCCEEEECEEEEESCCEEEEEETTEEGGGSC--C
T ss_pred cCCHhHCEEEEEEEEeCCCcEEEEEEEEEeCCCeeeccCCcceeecCCcEEEEEEccccCCCceEEEECCEecCCCC--C
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998764321 1
Q ss_pred cccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEEC
Q psy574 237 VDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSG 287 (977)
Q Consensus 237 ~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~ 287 (977)
..+.... ++ .|.|.++..+|+|.|+ |.|.|..|.....+.|.|.+
T Consensus 359 ~~~~~~~---~~--~L~i~~v~~~d~G~Y~-C~a~N~~G~~~~~~~l~V~d 403 (404)
T 3p3y_A 359 NPNREVA---GD--TIIFRDTQISSRAVYQ-CNTSNEHGYLLANAFVSVLD 403 (404)
T ss_dssp CTTEEEE---TT--EEEESSCCSSCCCEEE-EEEEETTEEEEEEEEEEEC-
T ss_pred CceEEec---CC--EEEEeecCHHHCEEEE-EEEEeCCCcEEEEEEEEEEe
Confidence 2223222 24 8999999999999999 99999999999999988864
No 49
>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A
Probab=99.97 E-value=8.6e-28 Score=270.57 Aligned_cols=305 Identities=18% Similarity=0.217 Sum_probs=238.5
Q ss_pred ceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEECCCCCCCcccCCCCCCCCCCCCCCCeEEeeCCCceEEEEEcCCC
Q psy574 344 GSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGLTLAWSRNNQ 423 (977)
Q Consensus 344 ~sl~I~~v~~~d~G~Y~C~a~n~~G~~~~s~~l~v~~~~~~~~~~~~~~~~~~~p~~P~~~~v~~~~~~sv~lsW~~p~~ 423 (977)
.++.|.++.+...+.|++.|.|..|.+.... ..+. ..+.+|.++.+...+.+++.|+|.++..
T Consensus 58 ~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~~~-~~~~----------------~~~~~p~~l~~~~~~~~si~l~W~~p~~ 120 (368)
T 1fnf_A 58 SSCTFDNLSPGLEYNVSVYTVKDDKESVPIS-DTII----------------PAVPPPTDLRFTNIGPDTMRVTWAPPPS 120 (368)
T ss_dssp CEEECCCCCTTSCEEEEEEEEETTEECCCEE-EEEC----------------CCCCCCEEEEEESCCSSCEEEEEECCTT
T ss_pred CEEEECCCCCCCEEEEEEEEEcCCCccCcee-eeec----------------CCCcCCceeEEEEcCCCeEEEEeeCCCC
Confidence 4688999999999999999999988654332 2221 1134788899988899999999999853
Q ss_pred CCCcccceEEEEEeecCCCCCCCCCCCCcccEEEeceecCcCeEEEEccCCCCeEEEEEEEEcCCCCCCCCCCCceEEee
Q psy574 424 IGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLR 503 (977)
Q Consensus 424 ~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~G~s~~S~~s~~~~~~ 503 (977)
+.+.+|.|+++...... .|..........++.+.+|.|++.|.|+|+|.|..|.+.+.. ...
T Consensus 121 ---~~~~~Y~v~~~~~~~~~----------~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~~~----~~~- 182 (368)
T 1fnf_A 121 ---IDLTNFLVRYSPVKNEE----------DVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLR----GRQ- 182 (368)
T ss_dssp ---CCCSEEEEEEEETTCTT----------CCEEEEECTTCCEEEECSCCTTCEEEEEEEEEETTEECCCEE----EEE-
T ss_pred ---CCCcEEEEEEEECCCCC----------ccEEEEcCCCcceEEecCCCCCCEEEEEEEEEeCCCCCCCeE----eee-
Confidence 57899999998765443 566665566778999999999999999999999988765421 111
Q ss_pred ccccccccccCCcceeecCCCCCCCcchHHHHhhcccccCCceEEEEEeeEeCCCeEEEEEEecCCCccceEEEEEEecC
Q psy574 504 GTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPMTSTSVKLTWEILNTDYIEGVYIYSRGLD 583 (977)
Q Consensus 504 ~~~p~~~p~~~~~~~~~~~P~~~~~g~~~~~~~~~l~~~~~~~~~~l~~~~~~~tsv~lsW~~p~~~~i~~Y~v~y~~~~ 583 (977)
..+ +.++.++.+...+.++|.|+|++|. +.+.+|+|+|+..+
T Consensus 183 -~~~------------------------------------~~~P~~l~~~~~~~~sv~l~W~~p~-~~i~~Y~v~~~~~~ 224 (368)
T 1fnf_A 183 -KTG------------------------------------LDSPTGIDFSDITANSFTVHWIAPR-ATITGYRIRHHPEH 224 (368)
T ss_dssp -ECC------------------------------------CCCCEEEEEESCCSSEEEEEEECCS-SCCSEEEEEEECSC
T ss_pred -cCC------------------------------------CCCCCccEEEEccCCEEEEEEeCCC-CCcCEEEEEEecCC
Confidence 111 1123678888999999999999985 56899999999887
Q ss_pred CCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeecceeCCCCCceEEeccCCCCCCCCceeEEEEecCcEEEEEee
Q psy574 584 PPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWK 663 (977)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~g~~s~~~~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~ 663 (977)
....+....+ .....++.|.+|.|++.|.|+|+|.|..|.|..+. ....+ .| .+|.++++...+.++|.|+|+
T Consensus 225 ~~~~~~~~~~--~~~~~~~~i~~L~p~t~Y~~~V~A~n~~g~~~~~~-~~~~t---~p-~~P~~l~~~~~~~~sv~l~W~ 297 (368)
T 1fnf_A 225 FSGRPREDRV--PHSRNSITLTNLTPGTEYVVSIVALNGREESPLLI-GQQST---VS-DVPRDLEVVAATPTSLLISWD 297 (368)
T ss_dssp CSSCCEEEEE--ETTCCEEEEESCCTTCEEEEEEEEEETTEECCCEE-EEEEC---CC-CSCEEEEEEEEETTEEEEEEE
T ss_pred CCCCccEEEe--CCCcCEEEECCCCCCCEEEEEEEEEeCCccCCccc-ccccC---CC-CCCCeeEEEecCCCEEEEEee
Confidence 5445544433 25778999999999999999999999999987654 22333 33 477899999889999999999
Q ss_pred CCCCCCCCeeeeEEEEEEEecC-CcceEEEEecCCcCeEEecCCCCCceEEEEEEEEcCCCcCCCCC-ceEE
Q psy574 664 PPPVGTHNGVIRTYQIIVGGGN-NSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSR-PALL 733 (977)
Q Consensus 664 ~p~~~~~ng~i~~Y~v~~~~~~-~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~~G~g~~S~-~~~~ 733 (977)
+|. . .|.+|.|+|+..+ ........+.++.+++++.+|+|++.|.|+|+|+|.+|.|++|. ++.+
T Consensus 298 ~p~--~---~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~L~p~t~Y~~~V~A~~~~G~g~~s~~~~~i 364 (368)
T 1fnf_A 298 APA--V---TVRYYRITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAVTGRGDSPASSKPISI 364 (368)
T ss_dssp CCS--S---CCSEEEEEEEETTCCSCCEEEEEETTCCEEEECSCCTTCCEEEEEEEECCCSSSCCBCCCEEE
T ss_pred CCC--C---ccceEEEEEEECCCCCccEEEEcCCCeeEEEecCCCCCCEEEEEEEEeCCCCcCcccCceeee
Confidence 984 2 4889999999865 33445566778899999999999999999999999999999886 5544
No 50
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}
Probab=99.97 E-value=1.9e-29 Score=273.98 Aligned_cols=265 Identities=17% Similarity=0.195 Sum_probs=212.2
Q ss_pred cccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecC
Q psy574 5 REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVA 84 (977)
Q Consensus 5 ~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~ 84 (977)
.|.|...+.++.+.+|++++|.|.+ .+ .|.|+|+|..+ +.....++.|.|.+++.+|+|.|+|.|.|
T Consensus 12 ~P~i~~~~~~~~v~~G~~v~l~C~~-~~----~i~W~~~~~~~------~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n-- 78 (290)
T 2o26_X 12 PPSIHPAQSELIVEAGDTLSLTCID-PD----FVRWTFKTYFN------EMVENKKNEWIQEKAEATRTGTYTCSNSN-- 78 (290)
T ss_dssp CCEESSCSSEEEEETTSCEEEEEEC-TT----EEEEEEECSSS------CEEEECSSEEEETTCCGGGCEEEEEEESS--
T ss_pred CCEEeCCCCeEEEcCCCcEEEEECC-CC----cEEEecCCcce------eeecCCCceEEEeccCHHhCeEEEEEeeC--
Confidence 4677778888999999999999998 44 89999999877 22333458899999999999999999998
Q ss_pred ceeeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEecccCc-eEEEEE-ECCeeCCCC-ceEEeccceEEEccCccC
Q psy574 85 GTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAV-LTVHWK-RLGSAMPED-RMSVLPSRSLQLSDVRLE 161 (977)
Q Consensus 85 g~~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~-~~i~W~-k~~~~l~~~-~~~~~~~~~L~I~~v~~~ 161 (977)
|. +..+.|.|..+|.+...+.+..+.+|+.+.|.|.+.+ |. +.+.|+ +++..+..+ ++....++.|.|.+++.+
T Consensus 79 g~--~~~~~l~V~~~~~~~~~~~~~~~~~g~~v~l~C~~~~-p~~~~v~W~~~~g~~l~~~~~~~~~~~~~L~i~~v~~~ 155 (290)
T 2o26_X 79 GL--TSSIYVFVRDPAKLFLVGLPLFGKEDSDALVRCPLTD-PQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKRA 155 (290)
T ss_dssp SC--EEEEEEEEECSSCCBCCCCCEEEETTSCEEECCCBSC-CSCEEEEEEETTSCCCCTTCEEEEETTTEEEEESCCGG
T ss_pred Cc--cEEEEEEEeCCCcccccccceEEecCCeEEEeCcCCC-CCCceEEEEeCCCcCCCCCCceeeCCCCCEEEecccHH
Confidence 43 5678899998887777778889999999999999985 77 999995 677777653 444556789999999999
Q ss_pred CCe-EEEEEEEeCCeeE-EEEEEEEEe----eCCeEEecCCCcEEeeCCeEEEEEEEecCCCCe-EEEEEcCeeeeecCC
Q psy574 162 DAG-EYVCEAENAVGKI-SASATLTVQ----MAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPS-TFWMLEGNRSLIYPG 234 (977)
Q Consensus 162 D~G-~Y~C~a~n~~g~~-~~~~~L~V~----~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~-i~W~~~g~~~~~~~~ 234 (977)
|+| .|+|.|.|..+.. +..+.|.|. .+|.+...+....+.+|+.++|.|.+.+.|.+. +.|++++..+....
T Consensus 156 d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~~i~W~~~~~~~~~~~- 234 (290)
T 2o26_X 156 YHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIA- 234 (290)
T ss_dssp GTTCEEEEEEEETTEEEECCCEEEEEECCCCSCCEEECSCSBCCCCTTCCEEEEEEEEESSTTCEEEEEEESSSEEECC-
T ss_pred HCCCEEEEEEEECCceEEeEEEEEEEEeCCCCCCccccCCCcceEecCCcEEEEEEEecCCcceeEEEecCCCCCccce-
Confidence 999 9999999986653 345788887 788888888888999999999999999999996 99999998731000
Q ss_pred CccccEEEEE--ccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEEC
Q psy574 235 DRVDNIQAEI--TSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSG 287 (977)
Q Consensus 235 ~~~~~~~~~~--~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~ 287 (977)
.......... .....+.|.|.+++.+|+|.|+ |.|.|..|.....+.|.|..
T Consensus 235 ~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~-C~a~N~~g~~~~~~~l~V~~ 288 (290)
T 2o26_X 235 QVKHNSWHRGDFNYERQETLTISSARVDDSGVFM-CYANNTFGSANVTTTLKVVE 288 (290)
T ss_dssp CEECCEEEEETTEEEEEEEEEESSCCSSSCEEEE-EEEECSSCEEEEEEEECC--
T ss_pred eecccccccCceeeEEEEEEEEcCCCcccCeEEE-EEEeCCCCcEEEEEEEEEEe
Confidence 0111111110 0012349999999999999999 99999999998888888876
No 51
>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin type III domain, alternative cell membrane, disulfide bond; 1.90A {Homo sapiens} PDB: 3l5j_A
Probab=99.97 E-value=5.5e-29 Score=270.35 Aligned_cols=278 Identities=16% Similarity=0.164 Sum_probs=215.0
Q ss_pred CCCCCCCCCeEEe-----eCCCceEEEEEcCCC-CCCcccceEEEEEeecCCCCCCCCCCCCcccEEEeceecCcCeEEE
Q psy574 396 TYPGPPTKPTLVN-----QTANGLTLAWSRNNQ-IGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTV 469 (977)
Q Consensus 396 ~~p~~P~~~~v~~-----~~~~sv~lsW~~p~~-~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~i 469 (977)
..|++|.++.... .+.+++.|+|.++.. .+++.+.+|.|+|+..... .+ .. ......+
T Consensus 2 ~~Ps~p~~~~~~~~~~~~~g~~sv~l~W~p~~~~~~~g~i~~Y~V~~~~~~~~-----------~~-~~----~~~~~~~ 65 (290)
T 3l5i_A 2 DRPSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKSH-----------LQ-NY----TVNATKL 65 (290)
T ss_dssp CCCSSCCCEEEEEEECSSTTCEEEEEEECCCCHHHHCSCEEEEEEEEEETTSC-----------CE-EE----EESSSEE
T ss_pred CCCCCCCceeEEecccccCCCceEEEEEccCCchhcCCceEeEEEEEEeCCcC-----------ce-eE----ecCCcEE
Confidence 3477777775432 235789999998542 3678899999999876543 11 11 1233467
Q ss_pred EccCCCCeEEEEEEEEcCCCCCCCCCCCceEEeeccccccccccCCcceeecCCCCCCCcchHHHHhhcccccCCceEEE
Q psy574 470 TNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIEL 549 (977)
Q Consensus 470 ~~L~p~t~Y~~~V~a~n~~G~s~~S~~s~~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~g~~~~~~~~~l~~~~~~~~~~ 549 (977)
.+|.|++.|.|+|+|.|..|.|.++ .+.+..... + ++.++.+
T Consensus 66 ~~l~p~t~Y~~~V~A~n~~G~s~~s----~~~~~~~~~--------------~--------------------~~~p~~~ 107 (290)
T 3l5i_A 66 TVNLTNDRYLATLTVRNLVGKSDAA----VLTIPACDF--------------Q--------------------ATHPVMD 107 (290)
T ss_dssp EEEECSSCEEEEEEEEESSCBCCCE----EEEECCTTC--------------C--------------------CCCCCEE
T ss_pred EEEcCCceEEEEEEEEcCCCCCCCc----eEEeecccc--------------c--------------------CCCccce
Confidence 8999999999999999999988665 222311100 0 1223467
Q ss_pred EEeeEeCCCeEEEEEEecCCCccceEEEEEEecCCCC----CceEEEEeecCccceEEECCCCCCcEEEEEEEEeeccee
Q psy574 550 TEVKPMTSTSVKLTWEILNTDYIEGVYIYSRGLDPPA----SVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVD 625 (977)
Q Consensus 550 l~~~~~~~tsv~lsW~~p~~~~i~~Y~v~y~~~~~~~----~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~ 625 (977)
+++...+ ++|.|+|++|.. .+.+|.|+|+..+... .|... .......+.+.+|+|++.|.|+|+|+|..|.
T Consensus 108 ~~~~~~~-~si~l~W~~p~~-~i~~Y~v~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~L~p~t~Y~~~V~A~n~~g~ 182 (290)
T 3l5i_A 108 LKAFPKD-NMLWVEWTTPRE-SVKKYILEWCVLSDKAPCITDWQQE---DGTVHRTYLRGNLAESKCYLITVTPVYADGP 182 (290)
T ss_dssp EEEEEET-TEEEEEEECCSS-CCCEEEEEEEEECSSSCCCCEEEEE---ETTCSEEECCSCCCTTCEEEEEEEEEETTEE
T ss_pred eEEEeCC-CeEEEEEeCCCC-CCCcEEEEEEECCCCCCCCcCeEEc---cCCCcceEEecCcCCccEEEEEEEEEeCCcc
Confidence 7777775 699999999955 7999999999887532 24333 2355677889999999999999999999999
Q ss_pred CCCCCceEEeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCcceEEEEecCCcCeEEecC
Q psy574 626 GKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTN 705 (977)
Q Consensus 626 g~~s~~~~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~l~~ 705 (977)
|. +..+.++|.+.+|..+| ++.+...+.++|.|+|++|+....+|.|.+|.|+|+..+.. .....+.++.++++|.+
T Consensus 183 g~-~~~~~~~t~~~~P~~~p-~~~~~~~~~~sv~l~W~~~~~~~~~g~i~~Y~v~~~~~~~~-~~~~~~~~~~~~~~~~~ 259 (290)
T 3l5i_A 183 GS-PESIKAYLKQAPPSKGP-TVRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTIFYRTIIGN-ETAVNVDSSHTEYTLSS 259 (290)
T ss_dssp CC-CEEEEEESSCCCCSSCC-CEEEEEECSSCEEEEECCCCHHHHSSCCCEEEEEEEETTSC-CEEEEEETTCSEEEECS
T ss_pred cc-cEEEEeEccccCCCCCC-eeeEeeccCCEEEEEEcCCChhccCCEEEEEEEEEEeCCCC-eEEEEeCCCceEEEeCC
Confidence 97 56677889999998777 67778888999999999776678899999999999986433 34556688899999999
Q ss_pred CCCCceEEEEEEEEcCCCcCCCCCceEEeec
Q psy574 706 LSAGIRYSVSLAATNRAGTGPYSRPALLSLT 736 (977)
Q Consensus 706 L~p~t~Y~~~V~A~~~~G~g~~S~~~~~~t~ 736 (977)
|+|++.|.|+|+|+|.+| |++|..+.|+|.
T Consensus 260 L~p~t~Y~~~V~A~n~~G-g~~s~~~~~~T~ 289 (290)
T 3l5i_A 260 LTSDTLYMVRMAAYTDEG-GKDGPEFTFTTP 289 (290)
T ss_dssp CCTTCEEEEEEEEEETTE-EEECCCEEEECC
T ss_pred CCCCCEEEEEEEEEeCCC-CCCCCceEeecC
Confidence 999999999999999999 999999999885
No 52
>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} PDB: 4gh7_B
Probab=99.97 E-value=7.9e-28 Score=271.63 Aligned_cols=304 Identities=19% Similarity=0.216 Sum_probs=241.5
Q ss_pred CceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEECCCCCCCcccCCCCCCCCCCCCCCCeEEeeCCCceEEEEEcCC
Q psy574 343 DGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGLTLAWSRNN 422 (977)
Q Consensus 343 ~~sl~I~~v~~~d~G~Y~C~a~n~~G~~~~s~~l~v~~~~~~~~~~~~~~~~~~~p~~P~~~~v~~~~~~sv~lsW~~p~ 422 (977)
..++.|.++.+...+.|++.|.|..|.+...... ... ..| +|.++.+...+.+++.|+|.++.
T Consensus 58 ~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~~~~~-~~~---------------~~p-~p~~l~~~~~~~~si~l~W~~~~ 120 (375)
T 3t1w_A 58 QSSCTFDNLSPGLEYNVSVYTVKDDKESVPISDT-IIP---------------EVP-QLTDLSFVDITDSSIGLRWTPLN 120 (375)
T ss_dssp CCEEEECCCCTTCCEEEEEEEEETTEECCCEEEE-ECC---------------CCC-CCSCCEEECCCSSEEEEECCCCC
T ss_pred ccEEEEcCCcCCCEEEEEEEEEcCCCCCCcEEee-EcC---------------CCC-CCceEEEEecCCCeEEEEEECCC
Confidence 4568999999999999999999987765433222 110 234 48899999999999999999875
Q ss_pred CCCCcccceEEEEEeecCCCCCCCCCCCCcccEEEeceecCcCeEEEEccCCCCeEEEEEEEEcCCCCCCCCCCCceEEe
Q psy574 423 QIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVL 502 (977)
Q Consensus 423 ~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~G~s~~S~~s~~~~~ 502 (977)
++.+.+|.|+++..+... .+..........++.+.+|.|++.|.|+|+|.|..|.|.++.. ...+
T Consensus 121 ---~~~i~~Y~v~~~~~~~~~----------~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~s~~--~~~t 185 (375)
T 3t1w_A 121 ---SSTIIGYRITVVAAGEGI----------PIFEDFVDSSVGYYTVTGLEPGIDYDISVITLINGGESAPTTL--TQQT 185 (375)
T ss_dssp ---CTTEEEEEEEEEESSSCC----------SCEEEEECTTCCEEEEECCCTTCEEEEEEEEEETTEECCCEEE--EEEC
T ss_pred ---CCCceEEEEEEEECCCCC----------ceeEEEcCCCcceEEEeCCCCCCEEEEEEEEEeCCcccCCeee--eeec
Confidence 357899999998765432 4444445667789999999999999999999999998876542 1111
Q ss_pred eccccccccccCCcceeecCCCCCCCcchHHHHhhcccccCCceEEEEEeeEeCCCeEEEEEEecCCCccceEEEEEEec
Q psy574 503 RGTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPMTSTSVKLTWEILNTDYIEGVYIYSRGL 582 (977)
Q Consensus 503 ~~~~p~~~p~~~~~~~~~~~P~~~~~g~~~~~~~~~l~~~~~~~~~~l~~~~~~~tsv~lsW~~p~~~~i~~Y~v~y~~~ 582 (977)
.+ .++.++++...+.+++.|+|++|.++.+.+|.|+|+..
T Consensus 186 ---~~-------------------------------------~~p~~l~~~~~~~~si~l~W~~p~~~~i~~Y~v~~~~~ 225 (375)
T 3t1w_A 186 ---AV-------------------------------------PPPTDLRFTNIGPDTMRVTWAPPPSIDLTNFLVRYSPV 225 (375)
T ss_dssp ---CC-------------------------------------CCCEEEEEESCCSSCEEEEEECCSSCCCCEEEEEEEEG
T ss_pred ---CC-------------------------------------CCCceeEEEecccCEEEEEEcCCCCCCccEEEEEEEeC
Confidence 11 12367888889999999999999778899999999988
Q ss_pred CCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeecceeCCCCCceEEeccCCCCCCCCceeEEEEecCcEEEEEe
Q psy574 583 DPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKW 662 (977)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~g~~s~~~~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W 662 (977)
+....|....+. ....++.|.+|.|++.|.|+|+|.|..|.|.++. ..+.|. | .+|.++++...+.+++.|+|
T Consensus 226 ~~~~~~~~~~~~--~~~~~~~i~~L~p~t~Y~~~V~A~~~~g~s~~~~-~~~~t~---p-~~P~~l~~~~~~~~sv~l~W 298 (375)
T 3t1w_A 226 KNEEDVAELSIS--PSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLR-GRQKTG---L-DSPTGIDFSDITANSFTVHW 298 (375)
T ss_dssp GGTTCCEEEEEC--TTCCEEEECSCCTTCEEEEEEEEEETTEECCCEE-EEEECC---C-CCCEEEEEESCCSSCEEEEE
T ss_pred CCCCCcEEEEcC--CCcCEEEeCCCCCCCEEEEEEEEEcCCCcCCcee-eEEecC---C-CCCCccEeeeccCCEEEEEE
Confidence 755556554443 5678999999999999999999999999986654 444553 3 37789999888899999999
Q ss_pred eCCCCCCCCeeeeEEEEEEEecCC-cceEEEEecCCcCeEEecCCCCCceEEEEEEEEcCCCcCCCCCc
Q psy574 663 KPPPVGTHNGVIRTYQIIVGGGNN-SALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRP 730 (977)
Q Consensus 663 ~~p~~~~~ng~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~~G~g~~S~~ 730 (977)
++| .|.+.+|.|+|+..+. .......+..+.++++|.+|+|++.|.|+|+|+|.+|.|++..-
T Consensus 299 ~~p-----~~~~~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~~~~G~s~p~s~ 362 (375)
T 3t1w_A 299 IAP-----RATITGYRIRHHPEHFSGRPREDRVPHSRNSITLTNLTPGTEYVVSIVALNGREESPLLIG 362 (375)
T ss_dssp ECC-----SSCCSEEEEEEEETTCCSSCEEEEEETTCCEEEECSCCTTCEEEEEEEEEETTEECCCEEE
T ss_pred CCC-----CcceeeEEEEEEECCCCCcceeEEcCCCccEEEECCCCCCCEEEEEEEEECCCCCCCceee
Confidence 998 2789999999998653 55666777888999999999999999999999999999986653
No 53
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A
Probab=99.97 E-value=1.4e-28 Score=267.15 Aligned_cols=269 Identities=23% Similarity=0.428 Sum_probs=219.8
Q ss_pred CCeEEeCCCceEEeCCCeEEEEEEecccC-ceEEEEEE-CCeeCCC--CceEEe----ccceEEEccCccCCCeEEEEEE
Q psy574 99 KPYIIRGPKDTTVSASSIIVFECSVGGDA-VLTVHWKR-LGSAMPE--DRMSVL----PSRSLQLSDVRLEDAGEYVCEA 170 (977)
Q Consensus 99 ~P~~~~~p~~~~v~~G~~v~l~C~v~g~p-~~~i~W~k-~~~~l~~--~~~~~~----~~~~L~I~~v~~~D~G~Y~C~a 170 (977)
++.+...|.+..+.+|+++.|.|.+.+.| .+.|.|+| ++..+.. .++.+. ....|.|.+++.+|+|.|+|.+
T Consensus 2 ~~~v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~i~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~ 81 (291)
T 1qz1_A 2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVV 81 (291)
T ss_dssp CCCEEEESSSEEEETTCCEEEEEEESSCCSCCEEEEECTTSCBCCSSCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEE
T ss_pred CcceEecCCCceEeCCCeEEEEEEeCCCCCCcEeEEECCCCeECccCCceEEEEEcCCCeEEEEEecCCCCCCEEEEEEE
Confidence 46777888899999999999999998876 68999999 7776653 344443 3468999999999999999999
Q ss_pred EeCCe-eEEEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCccccEEEEEccCCc
Q psy574 171 ENAVG-KISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGM 249 (977)
Q Consensus 171 ~n~~g-~~~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~ 249 (977)
.|..| ..+..+.|.|..+|.+...|....+.+|+.+.|.|.+.+.|.+.+.|++++..+... ...++.... ++
T Consensus 82 ~n~~g~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~---~~~~~~~~~--~~- 155 (291)
T 1qz1_A 82 TAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILK---KDVRFIVLS--NN- 155 (291)
T ss_dssp ECTTSCEEEEEEEEEEECCSEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEETTSCSSTT---CCTTEEECT--TS-
T ss_pred EcCCCCeeEEEEEEEeeccccccCCCCcccccCCCeEEEEEEeccCCCCEEEEEECCEEcccC---CCceEEEcc--CC-
Confidence 99885 467888999999999999999999999999999999999999999999999876421 223333322 34
Q ss_pred eEEEEeecccCCCCeEEEEEEEcCCCce--eEEEEEEEECCCCCCCCeEEeCCC--ceeecCCCcEEEEEEEcc--CceE
Q psy574 250 NLLKIQNVSRTAAPLIILCLGVNAAGSD--LARASLTVSGPDPNPPPVILFGPA--NQTLPLRSEARLRCQVRG--EGSV 323 (977)
Q Consensus 250 s~L~I~~v~~~d~G~Y~~C~a~n~~g~~--~~~~~l~V~~~~~~~pp~i~~~p~--~~~v~~g~~~~L~C~~~~--~p~i 323 (977)
.|.|.++..+|+|.|+ |.|.|..+.. ...+.|.|.. +|.+...+. ...+..|+.+.|.|.+.+ .|.+
T Consensus 156 -~L~i~~~~~~d~G~Y~-C~a~n~~~~~~~~~~~~l~v~~-----~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i 228 (291)
T 1qz1_A 156 -YLQIRGIKKTDEGTYR-CEGRILARGEINFKDIQVIVNV-----PPTVQARQSIVNATANLGQSVTLVCDADGFPEPTM 228 (291)
T ss_dssp -CEEETTCCGGGCEEEE-EEEEEGGGTEEEEEEEEEEEEE-----EEEEEESCSEEEEETTSCCCEEEEEEEEEESCCEE
T ss_pred -cEEEccCccccCeEEE-EEEEecCCCceeeEEEEEEEec-----CCcccccccccccccccCceEEEEEEEEEeCCCcE
Confidence 8999999999999999 9999976543 3445666665 566655443 456789999999999998 6789
Q ss_pred EEEECCEEcCCCC----cEEEecC-ceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEEC
Q psy574 324 QWWRGEREVGSGP----RVNVTGD-GSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFES 380 (977)
Q Consensus 324 ~W~~~g~~l~~~~----~~~~~~~-~sl~I~~v~~~d~G~Y~C~a~n~~G~~~~s~~l~v~~ 380 (977)
.|+++|..+.... ++..... ..|.|.++...|+|.|+|.|.|..|..+.++.|.|.+
T Consensus 229 ~W~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 290 (291)
T 1qz1_A 229 SWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFA 290 (291)
T ss_dssp EEEETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred EEEECCEECcCCCCCCcceEEcCCCcEEEEEecChhcCEEEEEEEEeCCCceEEEEEEEEEc
Confidence 9999999987653 5555444 4699999999999999999999999999999998863
No 54
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}
Probab=99.97 E-value=9.2e-29 Score=282.60 Aligned_cols=331 Identities=15% Similarity=0.160 Sum_probs=197.8
Q ss_pred CCCCeEEEEEEEecCceeeeEeEE------------EEEEcC---CeEEeCCCceEEeCCCeEEEEEEecccCceEEEEE
Q psy574 70 KTDDGRYQCVVKNVAGTRESTDAV------------LRVLVK---PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWK 134 (977)
Q Consensus 70 ~~D~G~Y~C~a~n~~g~~~s~~~~------------l~V~~~---P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~ 134 (977)
..|.|.|.|+..+..+...+.... |..... +.++..|.++.+.+|+++.|.|.+.|.|.+.|.|+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~c~~~p~~~~~~~~~~~v~V~~G~~v~L~C~v~g~P~p~i~W~ 83 (423)
T 3qs7_E 4 NQDLPVIKCVLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWV 83 (423)
T ss_dssp ----------------------------------------------------CEEEECSSCCEEEEEECSCCSSCEEEEE
T ss_pred cCCCCeeEEEEEeccCCCccccccccchhhhCCHHHcCCccCCCCCcceeccccEEEecCCcEEEEEEEEcCCCCeEEEE
Confidence 468899999998765433222111 222221 24455566889999999999999999999999999
Q ss_pred ECCeeCCCCceEEe---ccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEE
Q psy574 135 RLGSAMPEDRMSVL---PSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCG 211 (977)
Q Consensus 135 k~~~~l~~~~~~~~---~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~ 211 (977)
+++..++....... ...+|.|.+++.+|+|.|+|.|.|..|.....+.|.|..+|.+.. .....+..|+.+.|.|.
T Consensus 84 ~~~~~l~~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p~~~~-~~p~~~~~~~~~~L~C~ 162 (423)
T 3qs7_E 84 FKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTL-RRPYFRKMENQDALVCI 162 (423)
T ss_dssp ETTEEECCCCBC-----CEEEEEESSCCSSSCSEEEEEEEC--CEEEEEEEEEEC-----CE-EEEEEEECSSSSCEEEE
T ss_pred ECCCccCccceeccccceEEEEEEeecCcccCEEEEEEEEcCCCcEEEEEEEEEecCccccc-cCCcEeccCCceEEEEE
Confidence 99987654221111 123699999999999999999999999988899999987665421 12234566888999999
Q ss_pred EecCCCCeEEEEEcCeeeeecCCCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEE-EEEEEECCCC
Q psy574 212 IEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLAR-ASLTVSGPDP 290 (977)
Q Consensus 212 ~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~-~~l~V~~~~~ 290 (977)
+.|.|.|.|.|++++..+..... .....+... . ..+ ...|+|.|+ |.|.|..|..... +.|.|...
T Consensus 163 a~G~P~P~i~W~k~~~~~~~~~~--~~~~~~~~~--~-~~l-----~~~d~G~Y~-C~A~N~~G~~~~~~~~l~V~~~-- 229 (423)
T 3qs7_E 163 SESVPEPIVEWVLCDSQGESCKE--ESPAVVKKE--E-KVL-----HELFGTDIR-CCARNELGRECTRLFTIDLNQT-- 229 (423)
T ss_dssp EEESSCCEEEEEEC---------------CEEEC--C-SEE-----CCCCSSCEE-EEEECSSCEEEEECEEEESSSC--
T ss_pred EeeecCCeEEEEECCCCCccccc--ccccccccc--c-eEE-----ecccCeEEE-EEEEcCCCCcceeeEEEEEecC--
Confidence 99999999999998875421100 000001110 0 011 578999999 9999999976542 45555542
Q ss_pred CCCCeEEeCCCceeecCCCcEEEEEEEcc---CceEEEEECCEEcCCCCcEE---------EecCceEEEeccCCCCCeE
Q psy574 291 NPPPVILFGPANQTLPLRSEARLRCQVRG---EGSVQWWRGEREVGSGPRVN---------VTGDGSLVLTDVTKEDSGE 358 (977)
Q Consensus 291 ~~pp~i~~~p~~~~v~~g~~~~L~C~~~~---~p~i~W~~~g~~l~~~~~~~---------~~~~~sl~I~~v~~~d~G~ 358 (977)
|.+ .+.+..+..|+.+.|.|.+.+ .|.|.|+++|..+.....+. ....++|.|.++...|+|.
T Consensus 230 ---p~~--~~~~~~v~~G~~v~L~C~~~g~~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~ 304 (423)
T 3qs7_E 230 ---PQT--TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGY 304 (423)
T ss_dssp ---CCS--STTEEEEETTSCEEEEEEEEESSSCCCEEEEESSSBCCGGGEEEEEEEETTTEEEEEEEEEESSCCTTTCEE
T ss_pred ---Ccc--CCCceEEeCCCeEEEEEEEEcCCCCcEEEEEECCEEccccceeecccccCCceeEEEEEEEEeecCHHHCEE
Confidence 221 344677899999999999998 36899999998775432211 1223479999999999999
Q ss_pred EEEEEEcCCCceEEEEEEEEECCCCCCCcccCCCCCCCCCCCCCCCeEEeeCCCceEEEEEcCCC
Q psy574 359 YTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGLTLAWSRNNQ 423 (977)
Q Consensus 359 Y~C~a~n~~G~~~~s~~l~v~~~~~~~~~~~~~~~~~~~p~~P~~~~v~~~~~~sv~lsW~~p~~ 423 (977)
|+|.|.|. .+.++.|.|..++...+... ........+....+.+.........+.|..+..
T Consensus 305 Y~C~A~N~---~~~~~~L~V~~~p~i~~~~~-~~~~~v~~G~~v~l~C~~~g~P~p~i~W~k~g~ 365 (423)
T 3qs7_E 305 YTCSSSKH---PSQSALVTIVEKGFINATNS-SEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRK 365 (423)
T ss_dssp EEEEETTE---EEEEEEEEEESSCEEEEC----CEECCCTTCCCCEEEEEEEESCCEEEEEETTE
T ss_pred EEEEEecC---CCceEEEEEEeCCcceEcCC-CccEEecCCCeEEEEEEEEEcCCCeEEEEECCE
Confidence 99999998 77788888886543211000 011122334445555555555556788876543
No 55
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Probab=99.97 E-value=4.2e-29 Score=283.42 Aligned_cols=262 Identities=23% Similarity=0.377 Sum_probs=214.2
Q ss_pred cccceecccceEEeCCCcEEEEEECCCCCC---CCeEEEEeCCEEeecC---CCceEEEecCcEEEEcCCCCCCC-eEEE
Q psy574 5 REEFRVQPKSQRVAAGDTALLECGPPRGHP---EPTLVWKKNGHPIDFE---NSKRLRLVDGTNLAIQDSRKTDD-GRYQ 77 (977)
Q Consensus 5 ~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P---~~~v~W~k~g~~l~~~---~~~r~~~~~~g~L~I~~v~~~D~-G~Y~ 77 (977)
.+.|...+....+.+|+.++|.|.+ .+.| .+.|.|+|++..+... ...|+.+..+++|.|.+++.+|+ |.|+
T Consensus 103 ~p~~~~~~~~~~v~~G~~v~l~C~~-~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~ 181 (388)
T 2v5m_A 103 AQYYEADVNKEHVIRGNSAVIKCLI-PSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQ 181 (388)
T ss_dssp CCCCCCBCCCEEEETTSCEEECCBC-CTTTTTTEEEEEEEETTCCEECSSSCBTTTEEECTTSCEEESSCCGGGGGCCEE
T ss_pred ccccccCccceeeecCCcEEEEEEC-cCCCCCCcceEEEEeCCCcccccccCCCCcEEEccCCcEEEecCCccccCeeEE
Confidence 4566777788899999999999998 4443 3789999999877432 24678888889999999999999 9999
Q ss_pred EEEEecCceeee---EeEEEEEEcC-----CeEEe-CCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCC-------
Q psy574 78 CVVKNVAGTRES---TDAVLRVLVK-----PYIIR-GPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMP------- 141 (977)
Q Consensus 78 C~a~n~~g~~~s---~~~~l~V~~~-----P~~~~-~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~------- 141 (977)
|.+.|..+.... ....|.|..+ |.+.. ......+.+|+.+.|.|.+.|.|.+.|.|+|++..+.
T Consensus 182 C~~~n~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~ 261 (388)
T 2v5m_A 182 CRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVL 261 (388)
T ss_dssp EEEEETTTCCEEECSSCBCEEEECCCSCEEEECCSSCCCCEEEETTSCEEECCCCEEESCCEEEEEEECTTSSCEEECCC
T ss_pred EEeccCCCCceeeccccceEEEecCCcCCCCcCccccCCceEEeeCCcEEEEEECCCCCCCEEEEEecCCCCcccccccc
Confidence 999997643221 1235666654 22211 2344578899999999999999999999999854332
Q ss_pred CCceEEeccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEEecCCCCeEE
Q psy574 142 EDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTF 221 (977)
Q Consensus 142 ~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~ 221 (977)
..++. ..++.|.|.+++.+|+|.|+|.|.|..|..+..+.|.|..+|.+...|....+.+|+.++|.|.+.|.|.+.+.
T Consensus 262 ~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~ 340 (388)
T 2v5m_A 262 NDRVK-QVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVS 340 (388)
T ss_dssp SSSEE-EETTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEEEEEEEEESSEEEECTTSCEEEEEEEEEECCCEEE
T ss_pred cCcee-cccCEEEECcCCHHHCeEEEEEEecCCCceeEEEEEEEeCCCccccCCCcEEecCCCCEEEEEEeccccCCeEE
Confidence 12332 35679999999999999999999999999999999999999999888988899999999999999999999999
Q ss_pred EEEcCeeeeecCCCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEE
Q psy574 222 WMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTV 285 (977)
Q Consensus 222 W~~~g~~~~~~~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V 285 (977)
|+++|..+.. +.+.|.|.++..+|+|.|+ |.|.|..|....++.|.|
T Consensus 341 W~~~g~~i~~----------------~~~~L~i~~v~~~d~G~Y~-C~a~N~~G~~~~~~~l~V 387 (388)
T 2v5m_A 341 WMKDGKAIGH----------------SESVLRIESVKKEDKGMYQ-CFVRNDRESAEASAELKL 387 (388)
T ss_dssp EEETTEECSC----------------CSSEEEESSCCGGGCEEEE-EEEECSSCEEEEEEEEEE
T ss_pred EEECCEECcc----------------CCCEEEEecCChhhCEEEE-EEEEcCCCcEEEEEEEEe
Confidence 9999987631 1238999999999999999 999999999999888876
No 56
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY acidic protein fold, fibronectin type III fold, hormone- growth factor complex; NMR {Homo sapiens}
Probab=99.97 E-value=1.6e-27 Score=289.09 Aligned_cols=337 Identities=15% Similarity=0.153 Sum_probs=238.1
Q ss_pred CceEEEeccCCCCCeEEEEEEEcCCCce-EEEEEEEEECCCCCCCcccCCCCCCCCCCCCCCCeEEee--CCC---ceEE
Q psy574 343 DGSLVLTDVTKEDSGEYTCVVKSPHGSA-SWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQ--TAN---GLTL 416 (977)
Q Consensus 343 ~~sl~I~~v~~~d~G~Y~C~a~n~~G~~-~~s~~l~v~~~~~~~~~~~~~~~~~~~p~~P~~~~v~~~--~~~---sv~l 416 (977)
...+.|.++.+...|.|++.|.|..|.. ..+....+... ....+|++|.++.+... +.+ ++.|
T Consensus 222 ~~~~~i~~L~P~t~Y~frV~A~n~~G~~~~ss~s~~~~t~-----------~~~~pp~~P~~l~~~~~~~~~~g~~sv~l 290 (680)
T 1zlg_A 222 DERVQLTDIRPSRWYQFRVAAVNVHGTRGFTAPSKHFRSS-----------KDPSAPPAPANLRLANSTVNSDGSVTVTI 290 (680)
T ss_pred CCeEEeCCCCCCCEEEEEEEEEeCCCCCCCCCCccceEcC-----------CCCCCCCCCCceEeeeeeecCCCceEEEE
Confidence 4468899999999999999999998832 21111222111 11146899999999888 778 9999
Q ss_pred EEEcCCCCCCcccceEEEEEeec-CCCCCCCCCCCCcccEEEeceecCcCeEEEEccCCCCeEEEEEEEEcCCCCCCCCC
Q psy574 417 AWSRNNQIGSSSLLGYQVEMYSR-PLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSP 495 (977)
Q Consensus 417 sW~~p~~~~~~~i~~Y~I~~~~~-~~~~~~~~~~~~~~~w~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~G~s~~S~ 495 (977)
+|.+|.. .++++.+|.|+|+.. +... ......|..........+++|.+|.|++.|.|+|+|.|..|.|.+|.
T Consensus 291 ~W~pP~~-~~g~i~~Y~V~~~~~~~~~~-----~~~~~~~~~~~v~~~~~~~~l~~L~p~t~Y~~~V~A~n~~G~g~~S~ 364 (680)
T 1zlg_A 291 VWDLPEE-PDIPVHHYKVFWSWMVSSKS-----LVPTKKKRRKTTDGFQNSVILEKLQPDCDYVVELQAITYWGQTRLKS 364 (680)
T ss_pred EecCCCC-CCCceeEEEEEEEecccccc-----cCCccceEEEEEcCCeeEEEeCCCCCCCEEEEEEEEEECCCcCCCCC
Confidence 9998876 568899999999832 1110 01122677766555668899999999999999999999999998877
Q ss_pred CCceEEee--ccccccccccCCcceeecCCCCCCCcchHHHHhhcccccCCceEEEEEeeEeCCCeEEE-----------
Q psy574 496 LSDEIVLR--GTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPMTSTSVKL----------- 562 (977)
Q Consensus 496 ~s~~~~~~--~~~p~~~p~~~~~~~~~~~P~~~~~g~~~~~~~~~l~~~~~~~~~~l~~~~~~~tsv~l----------- 562 (977)
....+.+. ...| . +.++++...+.++|.|
T Consensus 365 ~~~~v~~~T~~~~P-------------------------------------~-p~~l~~~~~s~tsi~lp~~~~~~~~~l 406 (680)
T 1zlg_A 365 AKVSLHFTSTHATN-------------------------------------N-KEQLVKTRKGGIQTQLPFQRRRPTRPL 406 (680)
T ss_pred CceeEEEECCCCCC-------------------------------------C-ccccccccccCccccccccccCCCccc
Confidence 64333331 1111 1 2456677777777766
Q ss_pred EEEec-CCCccceEEEEEEecCCCC--C----c------------eEEEEeecCccceEEECCCCCCcEEEEEEEEeecc
Q psy574 563 TWEIL-NTDYIEGVYIYSRGLDPPA--S----V------------AMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGS 623 (977)
Q Consensus 563 sW~~p-~~~~i~~Y~v~y~~~~~~~--~----~------------~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~ 623 (977)
+|++| ....+.+|+|.|+..+... . | ..... .....++++|.+|+|++.|.|+|+|.|..
T Consensus 407 ~W~~P~~~~~~~~y~v~w~~~~~~~v~~Y~V~w~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~L~p~t~Y~~~V~A~n~~ 485 (680)
T 1zlg_A 407 EVGAPFYQDGQLQVKVYWKKTEDPTVNRYHVRWFPEACAHNRTTGSEASS-GMTHENYIILQDLSFSCKYKVTVQPIRPK 485 (680)
T ss_pred cccCCcccCCcceEEEEEeCCCCCccceEEEEEeeeecccCCCCcceeee-eeccCceEEecCCCCCCeEEEEEEEecCC
Confidence 99988 4445668888887765321 1 1 11111 12456789999999999999999999999
Q ss_pred eeCCCCCceEEeccC-----------------CCCC-----CCCce----eEEEEecCcEEEEEeeCCCCCCCCeeeeEE
Q psy574 624 VDGKPSNLRAVRTLE-----------------CEPS-----GVPQL----TDPVLLNATSVLLKWKPPPVGTHNGVIRTY 677 (977)
Q Consensus 624 g~g~~s~~~~~~T~~-----------------~~P~-----~~P~~----v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y 677 (977)
|.+. +....|.|.. ..|. ++|.+ +.+...+.+ |.|+|++|. ...||.|++|
T Consensus 486 G~s~-~~~~~f~T~~~~~~~~~~~~~v~~~~~~~P~~~~v~~~P~~l~~~v~v~~~~~t-i~lsW~pP~-~~~ng~I~gY 562 (680)
T 1zlg_A 486 SHSK-AEAVFFTTPPCSALKGKSHKPIGCLGEAGHVLSKVLAKPENLSASFIVQDVNIT-GHFSWKMAK-ANLYQPMTGF 562 (680)
T ss_pred CCCC-ccccceeCCCccccccCCccccccCCCCccccccccCCccccceeEEEeccCce-EEEEecCCC-CCCCCCceeE
Confidence 9664 2222222221 1122 57888 666666666 999999985 3459999999
Q ss_pred EEEEEecCCcc----eEE------EEecCCcCeEEecCCCCCceEEEEEEEEcCCCcCCCCCceEEeecCCC
Q psy574 678 QIIVGGGNNSA----LIN------MTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGP 739 (977)
Q Consensus 678 ~v~~~~~~~~~----~~~------~~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~~G~g~~S~~~~~~t~~~~ 739 (977)
+|+|+..+... ... ..+.++.++++|.+|+|++.|.|+|+|+|.+|.|++ .++.++|....
T Consensus 563 ~V~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~n~~G~G~~-~~~~~~T~~~~ 633 (680)
T 1zlg_A 563 QVTWAEVTTESRQNSLPNSIISQSQILPSDHYVLTVPNLRPSTLYRLEVQVLTPGGEGPA-TIKTFRTPELP 633 (680)
T ss_pred EEEEEEccCCCccccccceeeecccccCCcccEEEecCCCCCceEEEEEEEEcCCCcCCC-cceEEECCCCC
Confidence 99998653111 111 123456789999999999999999999999999998 78888887654
No 57
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}
Probab=99.96 E-value=5.6e-29 Score=273.16 Aligned_cols=261 Identities=15% Similarity=0.194 Sum_probs=203.0
Q ss_pred ccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecC---cEEEEcCCCCCCCeEEEEEEEecCceee
Q psy574 12 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG---TNLAIQDSRKTDDGRYQCVVKNVAGTRE 88 (977)
Q Consensus 12 p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~---g~L~I~~v~~~D~G~Y~C~a~n~~g~~~ 88 (977)
+..+.+.+|+.++|.|....+.|.+.|.|+|||+.+.. ..|+.+..+ .+|.|.+++.+|+|.|+|.+.|..|...
T Consensus 8 ~~~~~v~eg~~v~l~~~~~~~~p~~~v~W~k~~~~i~~--~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~~~n~~g~~~ 85 (312)
T 2y23_A 8 EVVVNVDDDGVISLNFECDKMTPKSEFSWSKDYVSTED--SPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIAS 85 (312)
T ss_dssp CCEEEECTTCCEEEEEECSSCCTTCCEEEEETTEECTT--CTTEEEEEETTEEEEEESSCCGGGCEEEEEEESSSCCCCE
T ss_pred ceeEEEecCCeEEEEEEEeCCCCCcEEEEEECCEECCC--CCCEEEEEeCCEEEEEECcCCccCCEEEEEEEEeCCCcEE
Confidence 34578999999999999876789999999999999953 346665543 3799999999999999999999887543
Q ss_pred eEeEEEEEEc------------CCeEEeCCC-ceEEeCCCeEEEEEEec-ccCceEEEEEECCeeCCC-CceEEecc---
Q psy574 89 STDAVLRVLV------------KPYIIRGPK-DTTVSASSIIVFECSVG-GDAVLTVHWKRLGSAMPE-DRMSVLPS--- 150 (977)
Q Consensus 89 s~~~~l~V~~------------~P~~~~~p~-~~~v~~G~~v~l~C~v~-g~p~~~i~W~k~~~~l~~-~~~~~~~~--- 150 (977)
.+.|.|.. +|.+...+. ...+.+|+++.|.|.+. +.|.+.+.|+|++..+.. .++.+..+
T Consensus 86 --s~~l~v~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~ 163 (312)
T 2y23_A 86 --SYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNT 163 (312)
T ss_dssp --EEEECHHHHHHHHHHHHHHHSCBCCEEEEEEEEECSSSCEEEEEEESCCCSSCEEEEEETTEEECSSSSCEEEEETTT
T ss_pred --EEEEEEeeeeeeecccccCCCCccccccCCceEEeeCCCEEEEEEEEeCCCCCEEEEEECCEECeeCCcEEEEEccCC
Confidence 45566653 666555443 77899999999999998 899999999999998865 44444432
Q ss_pred --ceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEE-------------------EeeCCeEEecCCCcEEeeCCeEEEE
Q psy574 151 --RSLQLSDVRLEDAGEYVCEAENAVGKISASATLT-------------------VQMAPIVRERPSDLRLEVGRDAVFL 209 (977)
Q Consensus 151 --~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~-------------------V~~~p~~~~~p~~~~v~~G~~v~L~ 209 (977)
..|.|.+++.+|+|.|+|.|.+..........+. ...+|.+.... ...+.+|+.++|.
T Consensus 164 ~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~v~~G~~~~l~ 242 (312)
T 2y23_A 164 GIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYL-SWEVTGECNVLLK 242 (312)
T ss_dssp TEEEEEESCCCGGGCEEEEEEEESSSCEEEEEEEECTHHHHHHHHHHHHHHHHHHHHHSSEEEEEE-EEEEETTTEEEEE
T ss_pred CEEEEEEccCCcccCEeEEEEEEeCCceEEEEEEEcchhhhhhcccccccccchhhccCCceeecc-eEEEeCCCEEEEE
Confidence 2399999999999999999987554433333331 01235555333 3688999999999
Q ss_pred EEEecCCCC-eEEEEEcCeeeeecCCCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEE
Q psy574 210 CGIEGSPPP-STFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVS 286 (977)
Q Consensus 210 C~~~g~p~~-~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~ 286 (977)
|.+.+.|.+ .+.|++++..+.. ..++.+. ++...|.|.+++.+|+|.|+ |.|.|..|....++.|.|+
T Consensus 243 C~~~~~p~~~~v~W~~~g~~~~~-----~~~~~~~---~~~~~L~I~~v~~~d~G~Y~-C~a~N~~G~~~~~~~l~i~ 311 (312)
T 2y23_A 243 CKVANIKKETHIVWYKDEREISV-----DEKHDFK---DGICTLLITEFSKKDAGIYE-VILKDDRGKDKSRLKLVDE 311 (312)
T ss_dssp EEEESCCSSCEEEEEETTEEEEE-----ECCC-------CEEEEEECSCSGGGCEEEE-EEEESTTCCEEEEEEECSC
T ss_pred EEEcCCCCCCEEEEeeCCEECCC-----CCcEEEE---CCEEEEEECcCCHHHCEEEE-EEEEcCCCceeeeeEEEec
Confidence 999999988 9999999988752 2333333 24569999999999999999 9999999999998888764
No 58
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}
Probab=99.96 E-value=3.1e-29 Score=277.65 Aligned_cols=263 Identities=17% Similarity=0.207 Sum_probs=204.0
Q ss_pred cceEEeCCCcEEEEEECCCC---------CCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCe-EEEEEEEe
Q psy574 13 KSQRVAAGDTALLECGPPRG---------HPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDG-RYQCVVKN 82 (977)
Q Consensus 13 ~~~~v~~G~~v~L~C~~~~g---------~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G-~Y~C~a~n 82 (977)
..+.+.+|++++|.|.+ .+ +|.+.|.|+|+|..+.... .+ ..+++|.|.+++.+|+| .|+|.|.|
T Consensus 37 ~~v~v~eG~~v~L~C~~-~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~-~~---~~~~~L~i~~v~~~D~Gs~Y~C~a~n 111 (329)
T 3oq3_B 37 MNDMAALGEPFSAKCPP-IEDSLLSHRYNDKDNVVNWEKIGKTRRPLN-RR---VKNGDLWIANYTSNDSHRRYLCTVTT 111 (329)
T ss_dssp EEEEECTTSCEEECCHH-HHCTTTGGGSCCTTCEEEEEECSSSCEECS-TT---EETTEEEESSCCGGGGGCCEEEEEEC
T ss_pred ceEEEECCCeEEEEccC-CCCccccccccCCCCeeEEEECCCCccccC-ce---eecceEEEcCCChHhCCCcEEEEEEe
Confidence 56789999999999988 34 3678999999998875422 22 34789999999999999 99999999
Q ss_pred cCceeeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEecccC-ceEEEEEECCeeCCC--CceEEeccceEEEccCc
Q psy574 83 VAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDA-VLTVHWKRLGSAMPE--DRMSVLPSRSLQLSDVR 159 (977)
Q Consensus 83 ~~g~~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p-~~~i~W~k~~~~l~~--~~~~~~~~~~L~I~~v~ 159 (977)
..|......+.+.+..+|.+...+....+.+|+++.|.|.+.|.| .+.+.|+|++..+.. .++.. .++.|.|.+++
T Consensus 112 ~~g~~~~~~~~~v~~~~p~~~~~~~~~~~~~G~~v~L~C~~~g~p~~~~i~W~k~~~~l~~~~~~~~~-~~~~L~I~~v~ 190 (329)
T 3oq3_B 112 KNGDCVQGIVRSHIRKPPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQ-SGQNLIIHNPE 190 (329)
T ss_dssp TTSCEEEEEEEEEECCCCSCEEEEEETTSSTTTCEEEECCCCSCCCCCEEEEEETTEECCCSSSSEEE-ETTEEEECSCC
T ss_pred CCCceeeEEEEEEEcCCCcEeccccceEEeCCCcEEEEeccCCCCCCceEEEEECCccCCCCCceEec-CCCEEEEeecC
Confidence 887655444444555566655444444567899999999999999 899999999998853 34444 37899999999
Q ss_pred cCCCeEEEEEEEeC--Cee----EEEEEEEEEeeCC----eEEecCCCcEEeeCCeEEEEEEEecCC---CC-eEEEEEc
Q psy574 160 LEDAGEYVCEAENA--VGK----ISASATLTVQMAP----IVRERPSDLRLEVGRDAVFLCGIEGSP---PP-STFWMLE 225 (977)
Q Consensus 160 ~~D~G~Y~C~a~n~--~g~----~~~~~~L~V~~~p----~~~~~p~~~~v~~G~~v~L~C~~~g~p---~~-~i~W~~~ 225 (977)
.+|+|.|+|.|.|. .|. .+..+.|.|..+| .+. .|....+.+|+.++|.|.+.+.| .+ .+.|+++
T Consensus 191 ~~D~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~~~~~~~~~~~-~~~~~~v~~G~~~~l~C~~~g~p~~~~~i~v~W~~~ 269 (329)
T 3oq3_B 191 LEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLI-LDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENP 269 (329)
T ss_dssp GGGCEEEEEEEEECCTTSSSCEEEEEEEEEEEECCCCCCEEEE-CCSEEEECTTSCEEEEEEEEETTCCTTCCEEEEECT
T ss_pred hhhCEEEEEEEEecccCCCceeEEEeeEEEEEECCCCCCCcee-cCCeeEEecCCCEEEEEEEEECCCCCCCcEEEEEEC
Confidence 99999999999986 443 3445888998776 444 67778999999999999999998 77 8899999
Q ss_pred CeeeeecCCCccccEEE--EEccCCceEEEEeecccCCCC-eEEEEEEEcCCCceeEEEEEEEE
Q psy574 226 GNRSLIYPGDRVDNIQA--EITSDGMNLLKIQNVSRTAAP-LIILCLGVNAAGSDLARASLTVS 286 (977)
Q Consensus 226 g~~~~~~~~~~~~~~~~--~~~~~g~s~L~I~~v~~~d~G-~Y~~C~a~n~~g~~~~~~~l~V~ 286 (977)
|..+.... ...+.. .......+.|.|.+++.+|+| .|+ |.|.|..|.....+.|.|+
T Consensus 270 g~~i~~~~---~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~~Y~-C~a~N~~G~~~~~~~l~v~ 329 (329)
T 3oq3_B 270 SGWIIGLD---FGVYSILTSSGGITEATLYFENVTEEYIGNTYT-CRGHNYYFDKTLTTTVVLE 329 (329)
T ss_dssp TSCBCCBC---SSEEEEEEEETTEEEEEEEESSCCGGGTTCEEE-EEEECSSCEEEEEEEEEEC
T ss_pred CeeeeccC---CceeeeecccCceeEeEEEEEeccHHHCCCcEE-EEEEecCCceEEEEEEEeC
Confidence 98753211 111111 110012358999999999999 999 9999999999888888763
No 59
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Probab=99.96 E-value=2.1e-28 Score=261.23 Aligned_cols=239 Identities=18% Similarity=0.231 Sum_probs=198.8
Q ss_pred cccceecccceEEeCCCcEEEEEECCCCCCCC-eEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEec
Q psy574 5 REEFRVQPKSQRVAAGDTALLECGPPRGHPEP-TLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNV 83 (977)
Q Consensus 5 ~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~-~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~ 83 (977)
+|.|.+.|.++.+.+|+.++|.|.+ .+.|.+ .|.|+|||..+... ++.|.|.+++.+|+|.|+|.+.|.
T Consensus 1 kP~i~~~p~~~~v~~G~~v~l~C~~-~~~~~~~~~~W~~~g~~~~~~---------~~~l~i~~~~~~d~G~Y~C~~~~~ 70 (262)
T 3rjd_A 1 KAVITLQPPWVSVFQEETVTLHCEV-LHLPGSSSTQWFLNGTATQTS---------TPSYRITSASVNDSGEYRCQRGLS 70 (262)
T ss_dssp CCEEEESSCCSEEETTCCEEEEEEC-SSCCCTTCEEEEETTEECSCC---------SSEEEESSCCGGGCEEEEEEESSS
T ss_pred CCeEecCCCcEEeeCCCeEEEEEEC-CCCCCCceEEEEECCEEeecc---------CCeEEEecCCcccCeEEEEEEecC
Confidence 5889999999999999999999999 677777 99999999998422 567999999999999999999876
Q ss_pred CceeeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEe-cccCceEEEEEECCeeCCCCceEEeccceEEEccCccCC
Q psy574 84 AGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSV-GGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLED 162 (977)
Q Consensus 84 ~g~~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v-~g~p~~~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~D 162 (977)
.+ +..+.|.|..++... .+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+... ..+..|.|.+++.+|
T Consensus 71 ~~---s~~~~l~v~~~~~~~-~~~~~~~~~g~~v~l~C~~~~~~p~~~v~W~~~g~~~~~~----~~~~~l~i~~~~~~d 142 (262)
T 3rjd_A 71 GR---SDPIQLEIHRGWLLL-QVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFF----HWNSNLTILKTNISH 142 (262)
T ss_dssp CC---CCCEEEEEECSSEEE-EESCSEEETTSCEEEEEEEGGGCCCEEEEEEETTEEEEEE----EECCCEEESSCCGGG
T ss_pred Cc---cccEEEEEeccceEe-cCCCeEEecCCeEEEEEEccCCCCCceEEEEECCcccccc----CCCCeEEEEECChhh
Confidence 54 346788888766444 4556678899999999999 78889999999999887421 246789999999999
Q ss_pred CeEEEEEEEeCCeeEEEEEEEEEee---CCeEEecCCCcEEeeCCeEEEEEEEecCCC-Ce----EEEEEcCeeeeecCC
Q psy574 163 AGEYVCEAENAVGKISASATLTVQM---APIVRERPSDLRLEVGRDAVFLCGIEGSPP-PS----TFWMLEGNRSLIYPG 234 (977)
Q Consensus 163 ~G~Y~C~a~n~~g~~~~~~~L~V~~---~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~-~~----i~W~~~g~~~~~~~~ 234 (977)
+|.|+|.|.|..+..+..+.|.|.. +|.+...+ ...+.+|+.++|.|.+.+.|. +. +.|++++..+...
T Consensus 143 ~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~p~~~~~~-~~~~~~g~~~~l~C~~~~~p~~p~~~~~~~w~~~~~~~~~~-- 219 (262)
T 3rjd_A 143 NGTYHCSGMGKHRYTSAGISVTVKELFPAPVLNASV-TSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGR-- 219 (262)
T ss_dssp CEEEEEEEESSSEEEEECEEEEEECSSCCCEEEESS-CSSEETTCCEEEEEECCCCCC-----EEEEEEETTEEEEEE--
T ss_pred CEEEEEEEeCCCCccccceEEEeccCCCCCeEeecC-ceeecCCCeEEEEeEcccCCCCCCccEEEEEEeCCcEeccc--
Confidence 9999999999998888888999984 45555555 667999999999999999886 53 6788988765311
Q ss_pred CccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCce
Q psy574 235 DRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSD 277 (977)
Q Consensus 235 ~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~ 277 (977)
.+...|.|.++..+|+|.|+ |.|.|..|..
T Consensus 220 ------------~~~~~L~i~~v~~~d~G~Y~-C~a~n~~G~~ 249 (262)
T 3rjd_A 220 ------------NTSSEYQILTARREDSGLYW-CEAATEDGNV 249 (262)
T ss_dssp ------------ESCCEEEESSCCGGGCEEEE-EEEEETTSSC
T ss_pred ------------CCCceEEEEEechhhCeEEE-EEEEcccCce
Confidence 12348999999999999999 9999999975
No 60
>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R
Probab=99.96 E-value=9.4e-29 Score=271.74 Aligned_cols=268 Identities=21% Similarity=0.290 Sum_probs=209.6
Q ss_pred cceecccceEEeCCCcEEEEEECCCCCCCC-----eEEEEeCCEEee-----------cCCCceEEEe--------cCcE
Q psy574 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEP-----TLVWKKNGHPID-----------FENSKRLRLV--------DGTN 62 (977)
Q Consensus 7 ~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~-----~v~W~k~g~~l~-----------~~~~~r~~~~--------~~g~ 62 (977)
.+...|.++.+..|++++|.|.+ .+.|.+ .|.|+|+|.... .....|+.+. .+++
T Consensus 2 Vvv~~P~~v~~~~G~~v~L~C~v-~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~s 80 (313)
T 4fqp_A 2 VVVQAPTQVPGFLGDSVTLPCYL-QVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNAS 80 (313)
T ss_dssp CEEECCSEECCBTTSCEEECCEE-ECCTTSCCCCCEEEEEETTSSSCSEEEETTTEEEESSTTTEEESSCCTTSCCCBCC
T ss_pred eEEcCCCEEEEecCCCEEEEEEE-ECCCCCccceEEEEEEECCCCcceEEEecCCCceeccCcceEEEeeccCCcccceE
Confidence 45568889999999999999998 554443 589999875321 1223444442 1357
Q ss_pred EEEcCCCCCCCeEEEEEEEecCceeeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEe-cccCceEEEEEECCeeCC
Q psy574 63 LAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSV-GGDAVLTVHWKRLGSAMP 141 (977)
Q Consensus 63 L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v-~g~p~~~i~W~k~~~~l~ 141 (977)
|.|.+++.+|+|.|+|.+.+..+...+..+.|.|..+|.+...+....+..|+.+.+.|.+ .+.|.+.+.|++++..+.
T Consensus 81 L~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~l~v~~~P~~~~~~~~~~~~~~~~~~~~C~~~~~~P~~~i~W~~~~~~~~ 160 (313)
T 4fqp_A 81 LRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMP 160 (313)
T ss_dssp EEECSCCGGGCEEEEEEEECSSSCEEEEEEEECCBBCCEEEEEECCBCCCSSCEEEEEEEEEEEBSCCEEEEEETTCCEE
T ss_pred EEECcCChhhCEEEEEEEeeccCcceeeeeeeeeccCCcceecccceEeecCceEEEEEEccCccCCcEEEeecCCcccc
Confidence 9999999999999999987654444566778888889988887777788889999999987 578999999999988765
Q ss_pred CCceEEe-c------cceEEEccCccCCCeEEEEEEEeCCee--EEEEEEEEEeeCCeEEecC-CCcEEeeCCeEEEEEE
Q psy574 142 EDRMSVL-P------SRSLQLSDVRLEDAGEYVCEAENAVGK--ISASATLTVQMAPIVRERP-SDLRLEVGRDAVFLCG 211 (977)
Q Consensus 142 ~~~~~~~-~------~~~L~I~~v~~~D~G~Y~C~a~n~~g~--~~~~~~L~V~~~p~~~~~p-~~~~v~~G~~v~L~C~ 211 (977)
....... . ...|.|..+..+|.|.|+|.|.|..+. ....+.|.|..+|.+...+ ....+.+|+.++|.|.
T Consensus 161 ~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~v~~~~~~~~~~~~g~~v~l~C~ 240 (313)
T 4fqp_A 161 NTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCD 240 (313)
T ss_dssp EEEEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTSSSCEEEEEECCBCEEEEEEEECCCSCEETTCCCEEEEEE
T ss_pred ccceeeeecccccccceeeeecccccccCeeEEEEEEccCcCccceeeeecccccCCccccccccceeecCCCeEEEEEE
Confidence 3221111 1 235899999999999999999997654 5667788888889886654 4446778899999999
Q ss_pred EecCCCC-eEEEEEcCeeeeecCCCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEECC
Q psy574 212 IEGSPPP-STFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGP 288 (977)
Q Consensus 212 ~~g~p~~-~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~~ 288 (977)
+.|+|.| .|.|+|+|..+.. . .. .. ++ .|.|.+++.+|+|.|+ |.|.|..|....++.|.|.+.
T Consensus 241 ~~g~P~p~~v~W~~~~~~l~~-----~--~~-~~--~~--~L~i~~v~~~d~G~Y~-C~a~N~~G~~~~~~~l~V~~~ 305 (313)
T 4fqp_A 241 ARSNPEPTGYNWSTTMGPLPP-----F--AV-AQ--GA--QLLIRPVDKPINTTLI-CNVTNALGARQAELTVQVKEG 305 (313)
T ss_dssp EEEESCCCEEEEEETTBSCCT-----T--EE-EE--TT--EEEECCCSSCCEEEEE-EEEECSSCEEEEEEEEEEECC
T ss_pred ecCCCCCcEEEEEECCEECCC-----c--eE-Ee--CC--EEEECcCChhhCEEEE-EEEEeCCCcEEEEEEEEEEeC
Confidence 9999999 6999999987631 1 11 11 23 8999999999999999 999999999999999999984
No 61
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}
Probab=99.96 E-value=2.6e-28 Score=264.95 Aligned_cols=270 Identities=21% Similarity=0.408 Sum_probs=217.7
Q ss_pred cCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEE-CCeeCCC-CceEEecc---ceEEEccCccCCCeEEEEEEEe
Q psy574 98 VKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKR-LGSAMPE-DRMSVLPS---RSLQLSDVRLEDAGEYVCEAEN 172 (977)
Q Consensus 98 ~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k-~~~~l~~-~~~~~~~~---~~L~I~~v~~~D~G~Y~C~a~n 172 (977)
.+|.+...|.+..+.+|+.+.|.|.+.|.|. .+.|+| ++..+.. .++.+..+ ..|.|.+++.+|+|.|+|.+.|
T Consensus 3 ~~p~v~~~~~~~~v~~G~~v~l~C~~~~~p~-~v~W~~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~n 81 (291)
T 2wim_A 3 ALLQVTISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATD 81 (291)
T ss_dssp CCCEEEESCSEEEEETTCCEEEEEEEESCCS-EEECBCTTCCBCCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred CCceEEEeccceEecCCCcEEEEEEEeCCCC-ceEEECCCCcCccCCCcEEEecCCCEEEEEEccCCcccCEEEEEEEec
Confidence 4688888999999999999999999998875 899999 5666543 45555433 4899999999999999999999
Q ss_pred CCeeE-EEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCccccEEEEEccCCceE
Q psy574 173 AVGKI-SASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNL 251 (977)
Q Consensus 173 ~~g~~-~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~s~ 251 (977)
..|.. +..+.|.|..+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+... ...++.... ++ .
T Consensus 82 ~~g~~~~~~~~l~v~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~---~~~~~~~~~--~~--~ 154 (291)
T 2wim_A 82 AKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTI---SDNRFAMLA--NN--N 154 (291)
T ss_dssp SSSCEEEEEEEEEEECCCBCCSCCCSEEEETTSCEEECCCCBCSSCCEEEEECC----CBC---CCSSEEECT--TS--C
T ss_pred ccCceEEEEEEEEecCCcceEeCCCChhhcCCCCEEEEEEEccCCCCEEEEEECCcccccc---CCceEEEcc--CC--C
Confidence 88865 5678899999998888888889999999999999999999999999999776421 233444332 24 8
Q ss_pred EEEeecccCCCCeEEEEEEEcCCCcee--EEEEEEEECCCCCCCCeEEeCCC--ceeecCCCcEEEEEEEcc--CceEEE
Q psy574 252 LKIQNVSRTAAPLIILCLGVNAAGSDL--ARASLTVSGPDPNPPPVILFGPA--NQTLPLRSEARLRCQVRG--EGSVQW 325 (977)
Q Consensus 252 L~I~~v~~~d~G~Y~~C~a~n~~g~~~--~~~~l~V~~~~~~~pp~i~~~p~--~~~v~~g~~~~L~C~~~~--~p~i~W 325 (977)
|.|.+++.+|+|.|+ |.+.|..+... ....+.|.. +|.+...+. ...+..|+.+.|.|.+.+ .|.+.|
T Consensus 155 L~i~~v~~~d~G~Y~-C~~~n~~~~~~~~~~~~~~v~~-----~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W 228 (291)
T 2wim_A 155 LQILNINKSDEGIYR-CEGRVEARGEIDFRDIIVIVNV-----PPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISW 228 (291)
T ss_dssp EEETTCCGGGCEEEE-EEEEETTTTEEEEEEEEEEEEB-----CCCCBCSCSEEECCSSSCCEEEEECBCCCBSCCEEEE
T ss_pred EEEEecchhhCEEEE-EEEEECCCCeeEEeeEEEEecc-----CCccccCcccccceecCCCeEEEEEEeecCCCCeEEE
Confidence 999999999999999 99999886543 445666666 455444443 445788999999999998 678999
Q ss_pred EECCEEcCCCCcEEEec-CceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEECC
Q psy574 326 WRGEREVGSGPRVNVTG-DGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESP 381 (977)
Q Consensus 326 ~~~g~~l~~~~~~~~~~-~~sl~I~~v~~~d~G~Y~C~a~n~~G~~~~s~~l~v~~~ 381 (977)
+++|..+....++.+.. .++|.|.++...|+|.|+|.|.|..|..+.++.|.|..+
T Consensus 229 ~~~g~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~ 285 (291)
T 2wim_A 229 FRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQ 285 (291)
T ss_dssp EETTEECCCTTTEEECSTTCEEEEESCCSTTCEEEEEEEEETTEEEEEEEEEEC---
T ss_pred EECCEECcCCccEEEcCCccEEEEeeCCcccCEEEEEEEEECCCceeeeEEEEEEEe
Confidence 99999998877776654 457999999999999999999999999999999998764
No 62
>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2
Probab=99.96 E-value=3.1e-31 Score=305.88 Aligned_cols=348 Identities=14% Similarity=0.203 Sum_probs=233.1
Q ss_pred eecccceEEeCCCcEEEEEECCCCC--CCCeEEEEeC--CEEe----ec-----------CCCceEEEecC-----cEEE
Q psy574 9 RVQPKSQRVAAGDTALLECGPPRGH--PEPTLVWKKN--GHPI----DF-----------ENSKRLRLVDG-----TNLA 64 (977)
Q Consensus 9 ~~~p~~~~v~~G~~v~L~C~~~~g~--P~~~v~W~k~--g~~l----~~-----------~~~~r~~~~~~-----g~L~ 64 (977)
..+|..+.+.+|++++|.|.+ .+. +.+.|.|+|+ +..+ .. ...+|+.+..+ ++|.
T Consensus 3 l~~~~~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~ 81 (434)
T 1igy_B 3 LQESGAELARPGASVKMSCKA-SGYTFTTYTIHWIKQRPGQGLEWIGYINPSSVYTNYNQRFKDKATLTRDRSSNTANIH 81 (434)
T ss_dssp EECCCCCEECTBCCEEECCEE-CSSCGGGCCCEEEEECTTCCEEEEEECCSSSCCCCCCGGGTTTEECCBCGGGCBBCEE
T ss_pred eECCCCeEecCCCCEEEEEEc-cCCcccCceEEEEEECCCCCCEEEEEEccCCCceecCccccccEEEEEECCCCEEEEE
Confidence 346778899999999999999 554 3678999996 3221 10 12457777643 3799
Q ss_pred EcCCCCCCCeEEEEEEEecCceeeeEeEEEEEEc----CCeEEeCCCceEEeCCCeEEEEEEeccc-Cce-EEEEEECCe
Q psy574 65 IQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLV----KPYIIRGPKDTTVSASSIIVFECSVGGD-AVL-TVHWKRLGS 138 (977)
Q Consensus 65 I~~v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V~~----~P~~~~~p~~~~v~~G~~v~l~C~v~g~-p~~-~i~W~k~~~ 138 (977)
|.+++.+|+|.|+|.+.|..+. ....+.|.|.. +|.+...+....+.+|+.++|.|.+.|. |.+ .|.|+|++.
T Consensus 82 I~~v~~~D~G~Y~C~~~~~~~~-~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~G~~v~L~C~~~g~~P~p~~v~W~k~~~ 160 (434)
T 1igy_B 82 LSSLTSDDSAVYYCVREGEVPY-WGQGTTVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSL 160 (434)
T ss_dssp ECSBCGGGCSEECCCCSSSSCC-CCCCEECEECCSCCBCCCEEEECCCCCCCCTTEEEEEEEEEEEBSSCCEEEETTTTB
T ss_pred ECCCChHHCEEEEEEEEccccc-cCCceEEEEccCCCCCCeEEEcCCccccCCCCcEEEEEEEeeecCCCeEEEEeeCCc
Confidence 9999999999999999885432 23445778763 4555443333346899999999999876 776 999999987
Q ss_pred eCCC---------CceEEeccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEEee----------C--CeEEecCCC
Q psy574 139 AMPE---------DRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQM----------A--PIVRERPSD 197 (977)
Q Consensus 139 ~l~~---------~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~~----------~--p~~~~~p~~ 197 (977)
.+.. +.+. ..+.|.|.++..+| |.|+|.|.|..+.......+.+.. + |.+...+..
T Consensus 161 ~~~~~~~~~~~~~~~~~--~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~v~~~~p~ 237 (434)
T 1igy_B 161 SSGVHTFPAVLQSDLYT--LSSSVTVPSSPRPS-ETVTCNVAHPASSTKVDKKIVPRDCGCKPCICTVPEVSSVFIFPPK 237 (434)
T ss_dssp CSSEEECCCEECSSCEE--EEEEEEEETTTTTS-SCCEEEEECTTTTCCEEEECCCCCCCCCCCCCCCSSSCCEEEECCC
T ss_pred CCCeEecCceecCCcEE--EEEEEEEcchhcCC-CcEEEEEEeCCCCccceeeccCCCCCCccccCCCCcCcEEEEeCCC
Confidence 5321 1111 23569999999889 999999999988744344443321 1 444333333
Q ss_pred cE--EeeCCeEEEEEEEecCC----CCeEEEEEcCeeeeecCCC-----ccccEEEEEccCCceEEEEeecccCCCCeEE
Q psy574 198 LR--LEVGRDAVFLCGIEGSP----PPSTFWMLEGNRSLIYPGD-----RVDNIQAEITSDGMNLLKIQNVSRTAAPLII 266 (977)
Q Consensus 198 ~~--v~~G~~v~L~C~~~g~p----~~~i~W~~~g~~~~~~~~~-----~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~ 266 (977)
.. +.+|+.++|.|.+.+.+ .+.|.|+|++..+...... ..+.+. ..+.|.|.+++.+|.|.|+
T Consensus 238 ~~~~v~~G~~~~L~C~~~g~~p~P~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~------~~~~L~i~~~~~~d~G~Y~ 311 (434)
T 1igy_B 238 PKDTLLITVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFR------VVSALPIMHQDWLNGKEFK 311 (434)
T ss_dssp HHHHHSTTSCCEEEEEECCCCSSCCCCCBCBBSSSCCBCCCSCCCCCCCCSSSCC------CCCCEECCHHHHHHTCCCB
T ss_pred hHHhcccCCCcEEEEEEeccccCCCCeEEEEEeCCcccCCcccCcceeCCCCcEE------EEEEEEECHHHccCCCcEE
Confidence 32 88999999999999884 3589999999765321100 011110 1247999999999999999
Q ss_pred EEEEEcCCCceeEEEEEEEECCCCCCCCeEEeCCCceeecCCCcEEEEEEEcc--Cc--eEEEEECCEEcCCCCcEE--E
Q psy574 267 LCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG--EG--SVQWWRGEREVGSGPRVN--V 340 (977)
Q Consensus 267 ~C~a~n~~g~~~~~~~l~V~~~~~~~pp~i~~~p~~~~v~~g~~~~L~C~~~~--~p--~i~W~~~g~~l~~~~~~~--~ 340 (977)
|.|.|..|.......+.+.. ....+|.+...+.......|+.+.|.|.+.+ ++ .|.|+++|..+....... .
T Consensus 312 -C~a~n~~~~~~~~~~v~~~~-~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~ 389 (434)
T 1igy_B 312 -CRVNSAAFPAPIEKTISKTK-GKPRAPQVYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQSDGQAPENYKNTQPIM 389 (434)
T ss_dssp -CCBCCSSCSSCCCCCCCCCC-SCCBCCCCEEECCCSSSSSSSEEEEEEEEEEEBCSCEEEEEEETTSCCSCCEECCCCC
T ss_pred -EEEECCCCCCceeEEEeccC-CCCcCCEEEEECCCHHHhcCCcEEEEEEEEeeECCCeEEEEEECCEecCCceecccee
Confidence 99999988653333332211 1112454433333333345778999999998 32 799999999874331111 1
Q ss_pred ecCc------eEEEeccCCCCCeEEEEEEEcCCCc
Q psy574 341 TGDG------SLVLTDVTKEDSGEYTCVVKSPHGS 369 (977)
Q Consensus 341 ~~~~------sl~I~~v~~~d~G~Y~C~a~n~~G~ 369 (977)
..++ .|.|......|.|.|+|.|.|....
T Consensus 390 ~~~g~~~~~s~l~i~~~~~~~~g~YtC~a~n~~l~ 424 (434)
T 1igy_B 390 DTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEGLH 424 (434)
T ss_dssp CSSSCEEEEEEEEEEHHHHHTTCCEEEEEEETTSG
T ss_pred CCCCcEEEEEEEEECchhccCCCEEEEEEEcCCCC
Confidence 2344 3556666666799999999997653
No 63
>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}
Probab=99.96 E-value=4.5e-29 Score=273.54 Aligned_cols=264 Identities=17% Similarity=0.267 Sum_probs=204.8
Q ss_pred ccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEE---------------eecCCCceEEEec----CcEEEEcCCCCCC
Q psy574 12 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHP---------------IDFENSKRLRLVD----GTNLAIQDSRKTD 72 (977)
Q Consensus 12 p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~---------------l~~~~~~r~~~~~----~g~L~I~~v~~~D 72 (977)
|.++++.+|++++|.|.+..+.|.+.|.|+|++.. +......|+.+.. +++|.|.+++.+|
T Consensus 6 ~p~vtv~~G~~v~L~C~v~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D 85 (308)
T 4fom_A 6 EPHVTAVWGKNVSLKCLIEVNETITQISWEKIHGKSSQTVAVHHPQYGFSVQGEYQGRVLFKNYSLNDATITLHNIGFSD 85 (308)
T ss_dssp CCSCEEETTSCEEECCBCCCSSCEEEEEEEEESSSCEEEEEEECSSSCEEECTTTTTTEEESCCSSSBCCEEECSCCGGG
T ss_pred CCEeEEEcCCcEEEEEEecCCCCCcEEEEEECCCCCCceEEEecCCCCceecCcccceEEeeccCCCceEEEEccCCHHH
Confidence 33688999999999999855566678999995422 2222345555542 3579999999999
Q ss_pred CeEEEEEEEecCceeeeEeEEEEEEcCCeE--EeCCCceEEeCCCeEEEEEEe-cccCceEEEEEECCeeCCCCceEEe-
Q psy574 73 DGRYQCVVKNVAGTRESTDAVLRVLVKPYI--IRGPKDTTVSASSIIVFECSV-GGDAVLTVHWKRLGSAMPEDRMSVL- 148 (977)
Q Consensus 73 ~G~Y~C~a~n~~g~~~s~~~~l~V~~~P~~--~~~p~~~~v~~G~~v~l~C~v-~g~p~~~i~W~k~~~~l~~~~~~~~- 148 (977)
+|.|+|.|.|..+...+..+.+.+...|.+ ...+.......|+.+.|.|.+ .|.|.+.|.|+|++..+........
T Consensus 86 ~G~Y~C~a~n~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~C~~~~g~P~~~i~W~~~~~~~~~~~~~~~~ 165 (308)
T 4fom_A 86 SGKYICKAVTFPLGNAQSSTTVTVLVEPTVSLIKGPDSLIDGGNETVAAICIAATGKPVAHIDWEGDLGEMESTTTSFPN 165 (308)
T ss_dssp CEEEEEEEEETTTEEEEEEEEEEEEBCCEEEEEECSSCCCTTCSCEEEEEEEEEEEBSCCEEEECCCSSBCCEEEEECTT
T ss_pred CEEEEEEEeeCCCcceeeeeEEEeeeccccccccccceeEEcCCceEEEEEEecCCcCCceEEEEECCcccccccceeee
Confidence 999999999875544556677787776644 445666677789999999986 7899999999999988754322221
Q ss_pred ----ccceEEEccCccCCCeEEEEEEEeCCee--EEEEEEEEEeeCCeEEecCCC-cEEeeCCeEEEEEEEecCCCC-eE
Q psy574 149 ----PSRSLQLSDVRLEDAGEYVCEAENAVGK--ISASATLTVQMAPIVRERPSD-LRLEVGRDAVFLCGIEGSPPP-ST 220 (977)
Q Consensus 149 ----~~~~L~I~~v~~~D~G~Y~C~a~n~~g~--~~~~~~L~V~~~p~~~~~p~~-~~v~~G~~v~L~C~~~g~p~~-~i 220 (977)
....|.|..+..+|.|.|+|.|.|..+. .+..+.|.|..+|.+...+.. ..+..|+.++|.|.+.|.|.| .+
T Consensus 166 ~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~~v 245 (308)
T 4fom_A 166 ETATIISQYKLFPTRFARGRRITCVVKHPALEKDIRYSFILDIQYAPEVSVTGYDGNWFVGRKGVNLKCNADANPPPFKS 245 (308)
T ss_dssp SCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCCCEEEEECCBCCCSCEETTCCSCEEECCEEEESCEEEE
T ss_pred ecccccccceEEeeeecCCccEEEEEEccCCCCceEEeEEEEEecCCeeEEcccceeeeeccccEEEEEEEecCCCCcEE
Confidence 2246999999999999999999998765 566778888888888766544 467788999999999999988 69
Q ss_pred EEEEcCeeeeecCCCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEEC
Q psy574 221 FWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSG 287 (977)
Q Consensus 221 ~W~~~g~~~~~~~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~ 287 (977)
.|+|++..+.... . ..+...|.|.+++.+|+|.|+ |.|.|..|....++.|.|.+
T Consensus 246 ~W~k~~~~~~~~~-----~------~~~~~~l~i~~v~~~d~G~Y~-C~A~N~~G~~~~~~~l~V~~ 300 (308)
T 4fom_A 246 VWSRLDGQWPDGL-----L------ASDNTLHFVHPLTFNYSGVYI-CKVTNSLGQRSDQKVIYISD 300 (308)
T ss_dssp ECCBSSSCCCSSC-----B------CSTTEEECCSCCCSCCCSEEE-EEEEETTEEEEEEEECCEEC
T ss_pred EEEECCeECCCcE-----E------EcCCeEEEECCCChhhCEEEE-EEEEeCCCcEEEEEEEEEEc
Confidence 9999987653210 0 013346778999999999999 99999999999999999998
No 64
>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A {Homo sapiens} PDB: 1fnh_A
Probab=99.96 E-value=1.6e-27 Score=258.79 Aligned_cols=264 Identities=19% Similarity=0.255 Sum_probs=208.9
Q ss_pred CCCCCCCCCeEEeeCCCceEEEEEcCCCCCCcccceEEEEEeecCCCCCCCCCCCCcccEEEeceecCcCeEEEEccCCC
Q psy574 396 TYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVG 475 (977)
Q Consensus 396 ~~p~~P~~~~v~~~~~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~i~~L~p~ 475 (977)
..|.+|.++.+...+.+++.|+|.++. +.+.+|.|+|+...... .|..........++++.+|.|+
T Consensus 19 ~~p~~P~~l~~~~~~~~sv~l~W~~p~----~~~~~Y~v~~~~~~~~~----------~~~~~~~~~~~~~~~i~~L~p~ 84 (290)
T 3r8q_A 19 PAIPAPTDLKFTQVTPTSLSAQWTPPN----VQLTGYRVRVTPKEKTG----------PMKEINLAPDSSSVVVSGLMVA 84 (290)
T ss_dssp -CCCCCEEEEEEEECSSCEEEEEECCS----SCCCEEEEEEEESSSSS----------CCEEEEECTTCCEEEECSCCSS
T ss_pred CCCCCCCceEEEECCCCEEEEEEeCCC----CCeeEEEEEEEeCCCCC----------ceEEEEcCCCccEEEeCCCCCC
Confidence 468899999999999999999999983 47899999998865433 6777666667889999999999
Q ss_pred CeEEEEEEEEcCCCCCCCCCCCceEEeeccccccccccCCcceeecCCCCCCCcchHHHHhhcccccCCceEEEEEeeEe
Q psy574 476 LTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPM 555 (977)
Q Consensus 476 t~Y~~~V~a~n~~G~s~~S~~s~~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~g~~~~~~~~~l~~~~~~~~~~l~~~~~ 555 (977)
+.|.|+|+|.|..|.|.++. ..+++... +.++.++++...
T Consensus 85 t~Y~~~V~a~~~~g~s~~s~--~~~~t~~~--------------------------------------~~~P~~l~~~~~ 124 (290)
T 3r8q_A 85 TKYEVSVYALKDTLTSRPAQ--GVVTTLEN--------------------------------------VSPPRRARVTDA 124 (290)
T ss_dssp CEEEEEEEEEETTEECCCEE--EEEECCCC--------------------------------------CCCCEEEEEEEE
T ss_pred CEEEEEEEEEeCCCCCCCcc--eeEecCCC--------------------------------------CCCCceeEEEEc
Confidence 99999999999999887662 22222111 112368899999
Q ss_pred CCCeEEEEEEecCCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeecceeCCCCCceEEe
Q psy574 556 TSTSVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVR 635 (977)
Q Consensus 556 ~~tsv~lsW~~p~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~g~~s~~~~~~ 635 (977)
+.++|.|+|++| ++.+.+|.|+|+..+....+ .. .......++.|.+|.|++.|.|+|+|.|..|.|.+.. +.+.
T Consensus 125 ~~~sv~l~W~~p-~~~~~~Y~v~~~~~~~~~~~-~~--~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~g~s~~~~-~~~~ 199 (290)
T 3r8q_A 125 TETTITISWRTK-TETITGFQVDAVPANGQTPI-QR--TIKPDVRSYTITGLQPGTDYKIYLYTLNDNARSSPVV-IDAS 199 (290)
T ss_dssp CSSCEEEEEECC-SCCCCEEEEEEEESSSCCCE-EE--EECTTCSEEEECSCCTTCEEEEEEEEEETTEECCCEE-EEEE
T ss_pred CCCeEEEEEeCC-CCcccEEEEEEEECCCCcce-EE--ecCCCccEEEECCCCCCCEEEEEEEEEeCCcccCCEE-EEec
Confidence 999999999998 45789999999987743322 22 2235778999999999999999999999999876543 4444
Q ss_pred ccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCcceE-EEEecCCcCeEEecCCCCCceEEE
Q psy574 636 TLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALI-NMTVSASTPTLLLTNLSAGIRYSV 714 (977)
Q Consensus 636 T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~~~~-~~~~~~~~~~~~l~~L~p~t~Y~~ 714 (977)
|. | .+|.++++...+.+++.|+|++|. |.+.+|.|+|+..+..... .....++.++++|.+|+|++.|.|
T Consensus 200 t~---p-~~P~~l~~~~~~~~sv~l~W~~p~-----~~~~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~ 270 (290)
T 3r8q_A 200 TA---I-DAPSNLRFLATTPNSLLVSWQPPR-----ARITGYIIKYEKPGSPPREVVPRPRPGVTEATITGLEPGTEYTI 270 (290)
T ss_dssp CC---C-CCCEEEEEEEEETTEEEEEEECCS-----SCCCEEEEEEECTTSCCEECSSCCCTTCCEEEECSCCTTCEEEE
T ss_pred CC---C-CCCCccEEEeeCCCEEEEEEeCCC-----CcccEEEEEEEeCCCCcceeEeccCCCccEEEECCCCCCCEEEE
Confidence 43 3 377899999889999999999983 5789999999986533222 223446788999999999999999
Q ss_pred EEEEEcCCCcCCC
Q psy574 715 SLAATNRAGTGPY 727 (977)
Q Consensus 715 ~V~A~~~~G~g~~ 727 (977)
+|+|+|.+|.|.+
T Consensus 271 ~V~A~~~~g~s~p 283 (290)
T 3r8q_A 271 YVIALKNNQKSEP 283 (290)
T ss_dssp EEEEEETTEECCC
T ss_pred EEEEEeCCCcCCc
Confidence 9999999998763
No 65
>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}
Probab=99.96 E-value=3.9e-29 Score=275.05 Aligned_cols=276 Identities=18% Similarity=0.223 Sum_probs=218.4
Q ss_pred cCCeEEeCCCceEEeCCCeEEEEEEeccc-CceEEEEEECCeeCCCC-ceEEe-ccceEEEccCccCCCeEEEEEEEeCC
Q psy574 98 VKPYIIRGPKDTTVSASSIIVFECSVGGD-AVLTVHWKRLGSAMPED-RMSVL-PSRSLQLSDVRLEDAGEYVCEAENAV 174 (977)
Q Consensus 98 ~~P~~~~~p~~~~v~~G~~v~l~C~v~g~-p~~~i~W~k~~~~l~~~-~~~~~-~~~~L~I~~v~~~D~G~Y~C~a~n~~ 174 (977)
.+|.|... .+..+.+|+++.|.|.+.+. |.+.|.|+|++..+... ++.+. ....|.|.+++.+|+|.|+|.|.|..
T Consensus 6 ~~P~~~~~-~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~ 84 (317)
T 2y25_A 6 TGPHFVEY-LSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDR 84 (317)
T ss_dssp SCCEEEEE-EEEEEETTTEEEEEEEEESCCTTCEEEEEETTEEECCSCC-----CCEEEEETTCCSTTCSCEEEEEESSS
T ss_pred CCCcEeee-eeEEECCCCeEEEEEEEcCCCCCCEEEEEECCeEcCCCCcEEEECCeEEEEEccCCcccCeEEEEEEECCC
Confidence 46777644 46889999999999999877 78999999999988743 33332 34689999999999999999999999
Q ss_pred eeEEEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEEec----------CCCCeEEEEEcCeeeeecCCCccccEEEEE
Q psy574 175 GKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEG----------SPPPSTFWMLEGNRSLIYPGDRVDNIQAEI 244 (977)
Q Consensus 175 g~~~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g----------~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~ 244 (977)
|.....+.|.|..+|.+...+....+.+|+.+.|.|.+.+ .|.+.+.|++++..+. ...++....
T Consensus 85 g~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~l~c~~~~~~p~~~i~W~~~~~~~~-----~~~~~~~~~ 159 (317)
T 2y25_A 85 GKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIR-----YSDRVKTGV 159 (317)
T ss_dssp CEEEEEECCSTHHHHHHHHHHHHHHHTCBCCCEEEECSSEEEEEEEBSSCCSSCEEEEEESSSBCC-----CCSSEEEEE
T ss_pred CcEEEEEEEEEecCccccccCCceecccCCCeEEEeeccccEEEEEeccCCCCcEEEEEECCEECC-----CCCCeEEec
Confidence 9888787777776665544444555667777777777766 7889999999998764 334555554
Q ss_pred ccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEEC----------------CCCCCCCeEEeCCCceeecCC
Q psy574 245 TSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSG----------------PDPNPPPVILFGPANQTLPLR 308 (977)
Q Consensus 245 ~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~----------------~~~~~pp~i~~~p~~~~v~~g 308 (977)
. .+...|.|.+++.+|+|.|+ |.|.|..|....+..|.|.. .....|+.+...|....+..|
T Consensus 160 ~-~~~~~L~i~~~~~~d~G~Y~-C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g 237 (317)
T 2y25_A 160 T-GEQIWLQINEPTPNDKGKYV-MELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEG 237 (317)
T ss_dssp C-SSEEEEEEESCCGGGCEEEE-EEEECSSCEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTTSCEEEEBCCSEEEEETT
T ss_pred c-CCEEEEEECcCCcccCeeEE-EEEEeCCceEEEEEEEeeeeccccchhhcccCCcccCcCCCCcccccCCccEEEEcC
Confidence 3 34467999999999999999 99999999888877776541 111223344445667889999
Q ss_pred CcEEEEEEEcc--CceEEEEECCEEcCCCCcEEEecC-c---eEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEECC
Q psy574 309 SEARLRCQVRG--EGSVQWWRGEREVGSGPRVNVTGD-G---SLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESP 381 (977)
Q Consensus 309 ~~~~L~C~~~~--~p~i~W~~~g~~l~~~~~~~~~~~-~---sl~I~~v~~~d~G~Y~C~a~n~~G~~~~s~~l~v~~~ 381 (977)
+.+.|.|.+.+ .|.+.|+++|..+....++.+... + .|.|.++...|+|.|+|.|.|..|..+.++.|.|..|
T Consensus 238 ~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~P 316 (317)
T 2y25_A 238 KALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFIP 316 (317)
T ss_dssp SBBCEEEEEECSSCCEEEEEESSSEECCCSSEEECCBTTTEEEEEEBSCCSTTCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred CEEEEEEEEecCCCCEEEEEECCEeCCCCCcEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEeCCCeEEEEEEEEEEcC
Confidence 99999999998 678999999999988877777654 4 7999999999999999999999999999999988743
No 66
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*
Probab=99.96 E-value=3.8e-28 Score=263.41 Aligned_cols=265 Identities=20% Similarity=0.244 Sum_probs=208.5
Q ss_pred cccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEe-cCcEEEEcCCCCCCCeEEEEEEEec
Q psy574 5 REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV-DGTNLAIQDSRKTDDGRYQCVVKNV 83 (977)
Q Consensus 5 ~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~-~~g~L~I~~v~~~D~G~Y~C~a~n~ 83 (977)
+|.+...|.++.+.+|++++|.|.+ .+ .|.|++++.... +.... .++.|.|.+++.+|+|.|+|.+.|.
T Consensus 4 ~p~i~~~~~~~~v~~G~~v~L~C~~-~~----~v~W~~~~~~~~-----~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 73 (289)
T 3ejj_X 4 APVIEPSGPELVVEPGETVTLRCVS-NG----SVEWDGPISPYW-----TLDPESPGSTLTTRNATFKNTGTYRCTELED 73 (289)
T ss_dssp CCEEESCSSEEEECTTCCEEEEEEC-SS----CCEEECSCSSSS-----EECCCSSCCEEEESSCCGGGCEEEEEECCC-
T ss_pred CcEecCCCceEEECCCCCEEEEEEe-CC----cEEEccCCCceE-----EEeccCCccEEEEeeeccccCEEEEEEEecc
Confidence 4566677788999999999999998 44 499998764331 11111 2468999999999999999999987
Q ss_pred CceeeeEeEEEEEEcCCe-EEeCCCceEEeCCCeEEEEEEecccCceE-EEEEE-CCeeCC-CCceEEeccceEEEccCc
Q psy574 84 AGTRESTDAVLRVLVKPY-IIRGPKDTTVSASSIIVFECSVGGDAVLT-VHWKR-LGSAMP-EDRMSVLPSRSLQLSDVR 159 (977)
Q Consensus 84 ~g~~~s~~~~l~V~~~P~-~~~~p~~~~v~~G~~v~l~C~v~g~p~~~-i~W~k-~~~~l~-~~~~~~~~~~~L~I~~v~ 159 (977)
.+. .+..+.|.|..+|. +...+....+.+|+++.|.|.+.+.+.+. +.|++ ++..+. ..++.+..++.|.|.+++
T Consensus 74 ~~~-~~~~~~l~V~~~~~~~~~~~~~~~v~~g~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~ 152 (289)
T 3ejj_X 74 PMA-GSTTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWRGFIIRKAK 152 (289)
T ss_dssp -----CEEEEEEECCSSCSEEESCSEEEEETTSCEEECEEESCGGGGGSEEEEEGGGEECCTTCCEEEETTTEEEESSCC
T ss_pred CCc-ceeEEEEEEeCCCcceecccceEEEecCCceEeEEEccCCCcceEEEEEecCCeecCCCccEEECCCCCEEEeecc
Confidence 765 46778899988776 67778888999999999999998877665 99987 555554 346666678899999999
Q ss_pred cCCCeEEEEEEE-eCCeeEEEEEEEEEe----eCCeEEecCCCcEEeeCCeEEEEEEEec-CCCCeEEEEEcCeeeeecC
Q psy574 160 LEDAGEYVCEAE-NAVGKISASATLTVQ----MAPIVRERPSDLRLEVGRDAVFLCGIEG-SPPPSTFWMLEGNRSLIYP 233 (977)
Q Consensus 160 ~~D~G~Y~C~a~-n~~g~~~~~~~L~V~----~~p~~~~~p~~~~v~~G~~v~L~C~~~g-~p~~~i~W~~~g~~~~~~~ 233 (977)
.+|+|.|+|.|. +..+..+..+.|.|. .+|.+...+....+.+|+.++|.|.+.+ .|.+.+.|++++..+....
T Consensus 153 ~~d~G~Y~C~a~~~~~~~~~~~~~l~V~~~~~~~p~i~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~ 232 (289)
T 3ejj_X 153 VLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPL 232 (289)
T ss_dssp GGGCEEEEEEEEETTEEEECCCEEEEEESSCCCCCEEEEESSSEECCSSSCEEEEEEEEESSSCCEEEEEETTEECCCCE
T ss_pred cccCEEEEEEEEeCCCccccccEEEEEEECCCCCCeEEecCCceEEEeCCcEEEEEEeCCCCCceEEEEEECCEEeeccC
Confidence 999999999999 455556778899998 6888988888888899999999999998 7899999999998763210
Q ss_pred CCc--cccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEEC
Q psy574 234 GDR--VDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSG 287 (977)
Q Consensus 234 ~~~--~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~ 287 (977)
... ...+. ..+.|.|.+++.+|+|.|+ |.|.|..|....++.|.+..
T Consensus 233 ~~~~~~~~~~------~~~~L~i~~v~~~d~G~Y~-C~a~N~~G~~~~s~~L~~~~ 281 (289)
T 3ejj_X 233 NSDFQDNYYK------KVRALSLNAVDFQDAGIYS-CVASNDVGTRTATMNFQVVE 281 (289)
T ss_dssp EEEECSSSEE------EEEEEEESSCCSSSCEEEE-EEEECSSCEEEEEEEEECC-
T ss_pred CcccccceEE------eeEEEEEEeecccCCEEEE-EEEEcCCCCccccEEEEEEe
Confidence 000 00111 1248999999999999999 99999999999999998876
No 67
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R
Probab=99.96 E-value=3.5e-29 Score=275.33 Aligned_cols=273 Identities=15% Similarity=0.269 Sum_probs=206.2
Q ss_pred cccceEEeCCCcEEEEEECCCCCC-CCeEEEEeCCEEee--cCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecCcee
Q psy574 11 QPKSQRVAAGDTALLECGPPRGHP-EPTLVWKKNGHPID--FENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTR 87 (977)
Q Consensus 11 ~p~~~~v~~G~~v~L~C~~~~g~P-~~~v~W~k~g~~l~--~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~ 87 (977)
....+.+.+|++++|.|.+ .+.| .+.|.|+|+|..+. .....|+... ++.|.|.+++.+|+|.|+|.|.|..|..
T Consensus 11 ~~~~~~v~~G~~v~L~C~~-~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~-~~~L~i~~v~~~D~G~Y~C~a~n~~g~~ 88 (315)
T 1itb_B 11 EKIILVSSANEIDVRPCPL-NPNEHKGTITWYKDDSKTPVSTEQASRIHQH-KEKLWFVPAKVEDSGHYYCVVRNSSYCL 88 (315)
T ss_dssp CCCCCEEETTSCCCCBCCC-CSCCCSSCCCEECTTSCSCSCCCTTSSSEEC-SSBEECTTCCGGGCSCCEECCCSSSCCC
T ss_pred CceEEEEcCCCcEEEEeec-cCcCCCceEEEEeCCCcCccccccCCcEecc-CCeEEECCCChhhCEEEEEEEeCCceEE
Confidence 3446889999999999998 5555 78999999997543 2335566655 5689999999999999999999987764
Q ss_pred eeEeEEEEEE-cCCeEEeCC---CceEEeCCCeEEEEEEe------cccCceEEEEEECCeeCCCCce-EEeccceEEEc
Q psy574 88 ESTDAVLRVL-VKPYIIRGP---KDTTVSASSIIVFECSV------GGDAVLTVHWKRLGSAMPEDRM-SVLPSRSLQLS 156 (977)
Q Consensus 88 ~s~~~~l~V~-~~P~~~~~p---~~~~v~~G~~v~l~C~v------~g~p~~~i~W~k~~~~l~~~~~-~~~~~~~L~I~ 156 (977)
. ..+.+.|. .+|.+...+ ....+.+|+++.|.|.+ .|.|.+.+.|+|++..+..... ....++.|.|.
T Consensus 89 ~-~~~~v~v~~~~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~g~p~~~i~W~k~~~~l~~~~~~~~~~~~~L~i~ 167 (315)
T 1itb_B 89 R-IKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVM 167 (315)
T ss_dssp C-EECCCEEECCCTTSSSCGGGEEEEEEETTSCEEEECSSCTTTCTTTTCCCCCEEEETTEECCCCSSSEEEETTEEEES
T ss_pred E-EEEEEEEeCCCCCcccccccccceEEecCCCeEEEEecccccccCCCCCCEEEEEECCEECCCccceEeecCceEEEE
Confidence 3 23344433 345443333 23578899999999998 8899999999999999864322 23356799999
Q ss_pred cCccCCCeEEEEEEE-eCCeeE---EEEEEEEEe-----eCCeEEecCCC-cEEeeCCeEEEEEEEecCCCCeEEEEEcC
Q psy574 157 DVRLEDAGEYVCEAE-NAVGKI---SASATLTVQ-----MAPIVRERPSD-LRLEVGRDAVFLCGIEGSPPPSTFWMLEG 226 (977)
Q Consensus 157 ~v~~~D~G~Y~C~a~-n~~g~~---~~~~~L~V~-----~~p~~~~~p~~-~~v~~G~~v~L~C~~~g~p~~~i~W~~~g 226 (977)
+++.+|+|.|+|.|. |..|.. ...+.+.+. .+|.+...+.. ..+.+|+.++|.|.+.|.|.+.+.|+++|
T Consensus 168 ~v~~~d~G~Y~C~a~~n~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g 247 (315)
T 1itb_B 168 NVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNG 247 (315)
T ss_dssp SCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCCCCCCCEECSCCSEEEECCSSSCEEEEEEEEECTTSEEEEEETT
T ss_pred eceehhCcEEEEEEEcCCCCcEEEEEEEEEEEEecCCCCCCCEEecCCCCcEEEeCCCcEEEEEEEecCCCCeeEEEECC
Confidence 999999999999999 777764 445555554 56777665554 47889999999999999999999999999
Q ss_pred eeeeecCCCcccc-EEEEEcc-----CCceEEEEeecccCC-CCeEEEEEEEcCCCceeEEEEEEEEC
Q psy574 227 NRSLIYPGDRVDN-IQAEITS-----DGMNLLKIQNVSRTA-APLIILCLGVNAAGSDLARASLTVSG 287 (977)
Q Consensus 227 ~~~~~~~~~~~~~-~~~~~~~-----~g~s~L~I~~v~~~d-~G~Y~~C~a~n~~g~~~~~~~l~V~~ 287 (977)
..+.......... +.+.... ...+.|.|.+++.+| +|.|+ |.|.|..|....++.|.|+.
T Consensus 248 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~-C~a~N~~G~~~~~~~l~v~~ 314 (315)
T 1itb_B 248 SVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFT-CFAKNTHGIDAAYIQLIYPV 314 (315)
T ss_dssp EECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGTSCEE-EEEECTTCCEEEEEEEECCC
T ss_pred EECCcccccccccceeeeccCCCceeEEEEEEEEeecCHHHcCCceE-EEEecCCCceeEEEEEEecC
Confidence 8764321111111 1111100 012489999999999 99999 99999999999998888754
No 68
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*
Probab=99.96 E-value=1.6e-28 Score=274.40 Aligned_cols=272 Identities=16% Similarity=0.250 Sum_probs=177.7
Q ss_pred ccceEEeCCCcEEEEEECCCCCCC-----------CeEEEEeCCEE----eecC---CCceEEEecCcEEEEcCCCCCCC
Q psy574 12 PKSQRVAAGDTALLECGPPRGHPE-----------PTLVWKKNGHP----IDFE---NSKRLRLVDGTNLAIQDSRKTDD 73 (977)
Q Consensus 12 p~~~~v~~G~~v~L~C~~~~g~P~-----------~~v~W~k~g~~----l~~~---~~~r~~~~~~g~L~I~~v~~~D~ 73 (977)
..++.+.+|++++|.|.+ .+.|. +.|.|+|++.. .... ...|+... ++.|.|.+++.+|+
T Consensus 14 ~~~v~v~~G~~v~L~C~~-~~~p~~~~ys~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~-~~~L~i~~~~~~D~ 91 (349)
T 4dep_C 14 MRQIQVFEDEPARIKCPL-FEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKE-KDVLWFRPTLLNDT 91 (349)
T ss_dssp CCCCEEETTSCEEEECTC-CCCCSSSCHHHHHHTTCEEEEEEEESSCCCEEECCCCCGGGCEEEE-TTEEEESSCCGGGC
T ss_pred eeeEEEecCCeEEEEccc-cccccccccccccCCCceEEEEECCCCCcccccccccccCceEeec-CCEEEEccCChhhC
Confidence 556889999999999998 66554 89999998842 1111 34455544 67899999999999
Q ss_pred eEEEEEEEecCceeeeEeEEEEEEcCCeEE----eCCCceEEeCCCeEEEEEEe-----cccCceEEEEEECCeeCCCCc
Q psy574 74 GRYQCVVKNVAGTRESTDAVLRVLVKPYII----RGPKDTTVSASSIIVFECSV-----GGDAVLTVHWKRLGSAMPEDR 144 (977)
Q Consensus 74 G~Y~C~a~n~~g~~~s~~~~l~V~~~P~~~----~~p~~~~v~~G~~v~l~C~v-----~g~p~~~i~W~k~~~~l~~~~ 144 (977)
|.|+|.|.|..+... ..+.|.|..+|... ..|....+.+|+.+.|.|.+ .|.|.+.+.|+|++..+....
T Consensus 92 G~Y~C~a~n~~~~~~-~~~~l~V~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~g~p~~~v~W~k~~~~l~~~~ 170 (349)
T 4dep_C 92 GNYTCMLRNTTYCSK-VAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFN 170 (349)
T ss_dssp EEEEEEEECSSCEEE-EEEEEEEECCCTTSCCSCCCCEEEEETTCSEEEEECCSCTTSSCTTSCCEEEEEETTEECCSCS
T ss_pred EEEEEEEecCCceEE-EEEEEEEecCCcccCcccccCcceeeecCccEEEEcCCCcccccCCCCceEEEeeCCEECCCcc
Confidence 999999999877644 46788888766433 22446688999999999985 778999999999999986533
Q ss_pred eEEeccceEEEccCccCCCeEEEEEEEeCC-eeE---EEEEEEEEee------CCeEEecCCCc--EEeeCCeEEEEEEE
Q psy574 145 MSVLPSRSLQLSDVRLEDAGEYVCEAENAV-GKI---SASATLTVQM------APIVRERPSDL--RLEVGRDAVFLCGI 212 (977)
Q Consensus 145 ~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~-g~~---~~~~~L~V~~------~p~~~~~p~~~--~v~~G~~v~L~C~~ 212 (977)
.....+..|.|.+++.+|+|.|+|.|.|.. |.. ++.+.|.|.. +|.+...+... .+.+|+.++|.|.+
T Consensus 171 ~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~~~~~~~~~p~i~~~~~~~~~~v~~G~~v~l~C~~ 250 (349)
T 4dep_C 171 NVIPEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTV 250 (349)
T ss_dssp SEEEETTEEEEESCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCGGGCCSCEEC----------------CCCEEE
T ss_pred ceeecCCEEEEeeeeecCCcEEEEEEEEeeCCEEEEEEEEEEEEEEccCCCCCCCeEecCCCceeEEEecCCcEEEEEEE
Confidence 333355789999999999999999999976 443 6777788875 56665555433 78899999999999
Q ss_pred e----cCCCCeEEEEEcCeeeeecCCC-ccccEEEEEccC---CceEEEEeecccCCC-CeEEEEEEEcCCCceeEEEEE
Q psy574 213 E----GSPPPSTFWMLEGNRSLIYPGD-RVDNIQAEITSD---GMNLLKIQNVSRTAA-PLIILCLGVNAAGSDLARASL 283 (977)
Q Consensus 213 ~----g~p~~~i~W~~~g~~~~~~~~~-~~~~~~~~~~~~---g~s~L~I~~v~~~d~-G~Y~~C~a~n~~g~~~~~~~l 283 (977)
. +.|.+.+.|+++|..+...... ............ ..+.|.|.++..+|. |.|+ |.|.|..|.....+.|
T Consensus 251 ~~~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~-C~a~N~~G~~~~~~~l 329 (349)
T 4dep_C 251 YFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYV-CHARSAKGEVAKAAKV 329 (349)
T ss_dssp EECCCTTCCCEEEEESSCC--------CCCCEEEECCTTCCEEEEECC-------------CE-EEEECSSCEEEEECC-
T ss_pred EEccCCCCCCEEEEEECCEEccccCCccccccceeeecCCCcEEEEEEEEeeccHHHcCCcEE-EEEEcCCCcEEEEEEE
Confidence 8 5788999999999876431100 000000000001 123699999999999 9999 9999999999999888
Q ss_pred EEEC
Q psy574 284 TVSG 287 (977)
Q Consensus 284 ~V~~ 287 (977)
.|..
T Consensus 330 ~v~~ 333 (349)
T 4dep_C 330 KQKV 333 (349)
T ss_dssp ----
T ss_pred eeec
Confidence 8865
No 69
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.96 E-value=1.2e-29 Score=281.48 Aligned_cols=270 Identities=26% Similarity=0.414 Sum_probs=141.8
Q ss_pred ecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecCceeee
Q psy574 10 VQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRES 89 (977)
Q Consensus 10 ~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~s 89 (977)
..|.++.+.+|++++|.|.+....|.+.|.|+|||..+.. ..|+.+. ++.|.|.+++.+|+|.|+|.+.|. |. .+
T Consensus 13 ~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~--~~~~~~~-~~~L~i~~v~~~D~G~Y~C~a~n~-~~-~~ 87 (334)
T 1ry7_B 13 GQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVP--SERVLVG-PQRLQVLNASHEDSGAYSCRQRLT-QR-VL 87 (334)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcCcEEEecCCcEEEEeeCCCCCCCcceEEEECCeeCCC--cccEEec-cceEEEeecccccCEEEEEEEEeC-Ce-EE
Confidence 3488899999999999999943447789999999998843 3455553 678999999999999999999988 54 44
Q ss_pred EeEEEEEEcC----------------------CeEEeC----CCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCC
Q psy574 90 TDAVLRVLVK----------------------PYIIRG----PKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED 143 (977)
Q Consensus 90 ~~~~l~V~~~----------------------P~~~~~----p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~ 143 (977)
..+.|.|... |.+... +....+.+|+++.|.|.+.|.|.+.+.|+|++..+...
T Consensus 88 ~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~~ 167 (334)
T 1ry7_B 88 CHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGE 167 (334)
T ss_dssp -------------------------------CCCCSCCTTCCCCEEEEETTCCEEEECCCCCSSCCEEECCBTTBCCCTT
T ss_pred EEEEEEEeccCccccccccccccccccccCCCCEEeccccccceeEEecCCCcEEEEEEccCCCCCeEEEEECCEECccc
Confidence 5667777643 333221 12357889999999999999999999999999887643
Q ss_pred ce----EE-eccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEEeeC----CeEEe-cCCCcEEeeCCeEEEEEEEe
Q psy574 144 RM----SV-LPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMA----PIVRE-RPSDLRLEVGRDAVFLCGIE 213 (977)
Q Consensus 144 ~~----~~-~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~~~----p~~~~-~p~~~~v~~G~~v~L~C~~~ 213 (977)
.. .. .....|.|.+++.+|+|.|+|.|.|..|.....+.|.|... |.+.. .|....+.+|+.++|.|.+.
T Consensus 168 ~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~ 247 (334)
T 1ry7_B 168 HRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVY 247 (334)
T ss_dssp SSTTCCCCCTTTTEEEECSCCGGGCCCEEEEEEETTEEEEEEEEEEEECCCCSSCBCCTTCSCCEEEESSCCEEECCCCB
T ss_pred ccccceecccceEEEEECCCCcccCEEEEEEEEeCCCCEEEEEEEEEecCCCCCCceEecCCCceEEeCCCCEEEEEEEe
Confidence 21 11 14468999999999999999999999999888999999852 33332 35677899999999999999
Q ss_pred cCCCCeEEEEE----cCeeeeecCCCccccEEEEEc------cCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEE
Q psy574 214 GSPPPSTFWML----EGNRSLIYPGDRVDNIQAEIT------SDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASL 283 (977)
Q Consensus 214 g~p~~~i~W~~----~g~~~~~~~~~~~~~~~~~~~------~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l 283 (977)
+.|.+.+.|++ +|..+.... ...+.+... ....+.|.|.+++.+|+|.|+ |.|.|..|....++.|
T Consensus 248 g~p~p~v~W~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~-C~a~N~~G~~~~~~~l 323 (334)
T 1ry7_B 248 SDAQPHIQWLKHVEVNGSKVGPDG---TPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYT-CLAGNSIGFSHHSAWL 323 (334)
T ss_dssp CSSCEEEEEEECCCGGGCSBCTTS---SBCCCCCCCSSCSCSCTTCCCEEECSCCTTSCSEEE-EEEEESSCCEEEEEEE
T ss_pred cCCCCeEEEEECCcCCCccccCCC---CeeEEEeecCccccccccccEEEEccCCHHHCEEEE-EEEeCCCCeEEEEEEE
Confidence 99999999999 665543211 111111111 011248999999999999999 9999999999999999
Q ss_pred EEECC
Q psy574 284 TVSGP 288 (977)
Q Consensus 284 ~V~~~ 288 (977)
.|...
T Consensus 324 ~V~~~ 328 (334)
T 1ry7_B 324 VVLPA 328 (334)
T ss_dssp EEECS
T ss_pred EEEEC
Confidence 99874
No 70
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4
Probab=99.96 E-value=6e-29 Score=282.86 Aligned_cols=264 Identities=23% Similarity=0.360 Sum_probs=213.5
Q ss_pred ceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCE--EeecC---CCceEEEecCcEEEEcCCCCCCCe---EEEEE
Q psy574 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGH--PIDFE---NSKRLRLVDGTNLAIQDSRKTDDG---RYQCV 79 (977)
Q Consensus 8 ~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~--~l~~~---~~~r~~~~~~g~L~I~~v~~~D~G---~Y~C~ 79 (977)
+.+.|.+..+.+|+.++|.|.+..+.|.+.|.|+|++. ..... ...++.+..+++|.|.+++.+|+| .|+|.
T Consensus 103 p~~~~~~~~~~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~~~~Y~C~ 182 (395)
T 1bih_A 103 SPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCT 182 (395)
T ss_dssp CCCEEEEECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEECTTSCEEEEEECGGGCCSSEEEEEE
T ss_pred CCcCCcceeeeeCCcEEEEecCCCCCCCCeEEEEecCCCcCcccccccccccEEEcCCCcEEEEEEeeccCCCceEEEEE
Confidence 34456678889999999999975788999999999862 11111 156788888899999999999999 99999
Q ss_pred EEecCceeeeEeEE--EEEEc----------CCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCC---c
Q psy574 80 VKNVAGTRESTDAV--LRVLV----------KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED---R 144 (977)
Q Consensus 80 a~n~~g~~~s~~~~--l~V~~----------~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~---~ 144 (977)
|.|..|........ +.+.. +|.+ .+.+..+.+|+.+.|.|.+.|.|.+.+.|+|++..+... +
T Consensus 183 a~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~~G~~v~l~C~~~g~p~~~i~W~~~g~~~~~~~~~~ 260 (395)
T 1bih_A 183 AKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQY--VSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDR 260 (395)
T ss_dssp EECTTCSSCEEEEEEEECCCBCCSSCCCCCCEEEE--ECCSEEEETTSCEEEEEEEECSSCCCCEEEETTEECCCCTTSS
T ss_pred EEecccceEEEeeeEEecccccccccccCCcCcee--cCCceEEECCCcEEEEEEeccCCCCeEEEEECCEEcCCCCcee
Confidence 99988764432211 11111 2333 356778999999999999999999999999999988542 2
Q ss_pred eEEe---ccceEEEccCccCCCeEEEEEEEeCCeeEEE-EEEEEEeeCCeEEecCCC-cEEeeCCeEEEEEEEecCCCCe
Q psy574 145 MSVL---PSRSLQLSDVRLEDAGEYVCEAENAVGKISA-SATLTVQMAPIVRERPSD-LRLEVGRDAVFLCGIEGSPPPS 219 (977)
Q Consensus 145 ~~~~---~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~-~~~L~V~~~p~~~~~p~~-~~v~~G~~v~L~C~~~g~p~~~ 219 (977)
+... ....|.|.++..+|+|.|+|.|.|..|.... .+.|.|..+|.+...+.. ..+.+|+.++|.|.+.|.|.+.
T Consensus 261 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~ 340 (395)
T 1bih_A 261 ITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPN 340 (395)
T ss_dssp EESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEEEEEEEEEEEEEEEEECCCSEEEECTTSCEEEECEEEEESCCC
T ss_pred EEEEecCCCceEEEccCChhhCEEEEEEEEeCCCCceEEEEEEEEEcCCccccCCCcceEecCCCeEEEEEEECcccCCe
Confidence 2221 2237999999999999999999999988554 899999999999998888 7899999999999999999999
Q ss_pred EEEEEcCeeeeecCCCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEE
Q psy574 220 TFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTV 285 (977)
Q Consensus 220 i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V 285 (977)
+.|+++|..+. .+++.+.. + .|.|.++..+|+|.|+ |.|.|..|.....+.|.|
T Consensus 341 v~W~~~g~~~~------~~~~~~~~---~--~L~i~~~~~~d~G~Y~-C~a~N~~G~~~~~~~l~V 394 (395)
T 1bih_A 341 VVWSHNAKPLS------GGRATVTD---S--GLVIKGVKNGDKGYYG-CRATNEHGDKYFETLVQV 394 (395)
T ss_dssp CEEEETTEECC------SSSEEEET---T--EEEESSCCSTTCEEEE-EEEEETTEEEEEEEEEEE
T ss_pred eEEEECCEECC------CCceEEEC---C--EEEEeeCCcccCEEEE-EEEEccCCCceEEEEEEE
Confidence 99999998763 23555542 4 9999999999999999 999999999998888877
No 71
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A
Probab=99.96 E-value=4.2e-28 Score=268.75 Aligned_cols=268 Identities=16% Similarity=0.248 Sum_probs=206.3
Q ss_pred cceecccceEEeCCCcEEEEEECCCCC----CCCeEEEEeCC--E-------------EeecCCCceEEEe----cCcEE
Q psy574 7 EFRVQPKSQRVAAGDTALLECGPPRGH----PEPTLVWKKNG--H-------------PIDFENSKRLRLV----DGTNL 63 (977)
Q Consensus 7 ~~~~~p~~~~v~~G~~v~L~C~~~~g~----P~~~v~W~k~g--~-------------~l~~~~~~r~~~~----~~g~L 63 (977)
.+...|.++.+.+|++++|.|.+ .+. +.+.|.|+|++ . .+.....+|+.+. .+++|
T Consensus 16 ~~~~~~~~~~v~~G~~v~L~C~~-~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L 94 (331)
T 3u83_A 16 QVVQVNDSMYGFIGTDVVLHCSF-ANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRPSFTDGTI 94 (331)
T ss_dssp -----CEEEEEETTCCEEECCBC-SSCCSSCEEEEEEEEEEETTEEEEEEEEETTTEEEECTTCTTTEEESSCSSSBCCE
T ss_pred ceEEcCCcEEEEecCCEEEeeec-CCCCCCCceEEEEEEEcCCCCCceEEEEeccCCCCcCcccCCceEecccCCCCceE
Confidence 44556778999999999999998 444 45689999954 1 2223345677765 34679
Q ss_pred EEcCCCCCCCeEEEEEEEecCceeeeEeEEEEEEcCCeEEe--CCCceEEeCC---CeEEEEEE-ecccCceEEEEEECC
Q psy574 64 AIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIR--GPKDTTVSAS---SIIVFECS-VGGDAVLTVHWKRLG 137 (977)
Q Consensus 64 ~I~~v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V~~~P~~~~--~p~~~~v~~G---~~v~l~C~-v~g~p~~~i~W~k~~ 137 (977)
.|.+++.+|+|.|+|.+.+......+..+.|.|..+|.+.. .+....+.+| +.+.|.|. +.+.|.+.+.|+|++
T Consensus 95 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~g~~~~~~~l~C~~~~~~p~~~i~W~~~~ 174 (331)
T 3u83_A 95 RLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRL 174 (331)
T ss_dssp EECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEEEECSSCEEECTTCCCCEEEEEEEEEEEBSCCEEEEEESS
T ss_pred EEcccCcccCcEEEEEEEecCCCccEEEEEEEEecCCcceeecCCCceeecCCCccceEEEEEEecCCcCCceEEEEcCC
Confidence 99999999999999985544333456778999999887643 5667788888 88999998 789999999999963
Q ss_pred eeCCCC------ceEEeccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEEeeCCeEEecC-CCcEEeeCCeEEEEE
Q psy574 138 SAMPED------RMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERP-SDLRLEVGRDAVFLC 210 (977)
Q Consensus 138 ~~l~~~------~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~~~p~~~~~p-~~~~v~~G~~v~L~C 210 (977)
...... .........|.|.++..+|+|.|+|.|.|..+..+..+.|.|..+|.+...+ ....+.+|+.++|.|
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~~~l~C 254 (331)
T 3u83_A 175 KGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLTC 254 (331)
T ss_dssp CCEEEEEEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEEETTEEEEEEEECCEEEEEEEEEECCCSCCBTTCCCEEEEE
T ss_pred CCccccceeECCCCcEEEEEEEEEEeccccCCCEEEEEEecCCCcceeeEEEEEecCCeEEEecCCCceEeCCCeEEEEE
Confidence 322111 1111123568889999999999999999999999999999999888877554 445688999999999
Q ss_pred EEecCCCCe-EEEEEcCeeeeecCCCccccEEEEEccCCceEEEEe-ecccCCCCeEEEEEEEcCCCceeEEEEEEEECC
Q psy574 211 GIEGSPPPS-TFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQ-NVSRTAAPLIILCLGVNAAGSDLARASLTVSGP 288 (977)
Q Consensus 211 ~~~g~p~~~-i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~s~L~I~-~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~~ 288 (977)
.+.+.|.+. +.|++++..+.. . .... .+ .|.|. ++..+|+|.|+ |.|.|..|.....+.|.|...
T Consensus 255 ~~~g~p~p~~i~W~~~~~~~~~-----~--~~~~---~~--~L~i~~~v~~~d~G~Y~-C~a~N~~G~~~~~~~l~V~~~ 321 (331)
T 3u83_A 255 KADANPPATEYHWTTLNGSLPK-----G--VEAQ---NR--TLFFKGPINYSLAGTYI-CEATNPIGTRSGQVEVNITEA 321 (331)
T ss_dssp EEEEESCCCEEEEEETTBSCCT-----T--EEEE---TT--EEEECSCCCGGGCEEEE-EEEEETTEEEEEEEEECCBC-
T ss_pred eCcCCCCCCEEEEEECCCcccc-----c--ceec---Cc--EEEEeCCCccccCeEEE-EEEEeccccceEEEEEEEecc
Confidence 999999998 999999987631 1 1111 24 89999 99999999999 999999999999999998873
No 72
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}
Probab=99.96 E-value=2e-29 Score=280.43 Aligned_cols=276 Identities=18% Similarity=0.255 Sum_probs=218.1
Q ss_pred cccceecccceEEeCCCcEEEEEECCC-------CCCCCeEEEEeCCEEe--ecCCCceEEEecCcEEEEcCCCCCCCeE
Q psy574 5 REEFRVQPKSQRVAAGDTALLECGPPR-------GHPEPTLVWKKNGHPI--DFENSKRLRLVDGTNLAIQDSRKTDDGR 75 (977)
Q Consensus 5 ~~~~~~~p~~~~v~~G~~v~L~C~~~~-------g~P~~~v~W~k~g~~l--~~~~~~r~~~~~~g~L~I~~v~~~D~G~ 75 (977)
.|.|...|.++.+.+|++++|.|.+ . +.|.+.|.|+|+|..+ ......|+.. .++.|.|.+++.+|+|.
T Consensus 18 ~p~~~~~~~~~~v~~G~~v~L~C~~-~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~-~~~~L~i~~v~~~D~G~ 95 (339)
T 3o4o_C 18 CRFRGRHYKREFRLEGEPVALRCPQ-VPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWA-QDGALWLLPALQEDSGT 95 (339)
T ss_dssp CEEEEECSCCEEEETTBCCEEECTT-SCSSCCSTTSSCCBCCCEESSCCSCCSCCSSSCEEE-ETTEEEESSBCTTCCEE
T ss_pred hHhhCcCceEEEEECCccEEEEecc-ccccccccCCCCceEEEEECCCCcccCccccccEEe-eCCeEEECCCCcccCEE
Confidence 4778899999999999999999998 5 8899999999999884 3332556664 47899999999999999
Q ss_pred EEEEEEecCceeeeEeEEEEEEcCCeEE--eCCCceEEeCCCeEEEEEE-----ecccCceEEEEEECCeeCCCC--ceE
Q psy574 76 YQCVVKNVAGTRESTDAVLRVLVKPYII--RGPKDTTVSASSIIVFECS-----VGGDAVLTVHWKRLGSAMPED--RMS 146 (977)
Q Consensus 76 Y~C~a~n~~g~~~s~~~~l~V~~~P~~~--~~p~~~~v~~G~~v~l~C~-----v~g~p~~~i~W~k~~~~l~~~--~~~ 146 (977)
|+|.+.|..|. .+..+.|.|..+|... .......+.+|+.+.|.|. +.|.|.+.+.|+|++..+... ++.
T Consensus 96 Y~C~~~n~~g~-~~~~~~l~V~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~g~p~~~v~W~k~g~~~~~~~~~~~ 174 (339)
T 3o4o_C 96 YVCTTRNASYC-DKMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFL 174 (339)
T ss_dssp EECCEEETTEE-EEEEEEEEEECSCGGGHHHHCEEEEEETTSCEEEECCSCTTTCCSSSCCCBCCEESSCBCCTTCSSEE
T ss_pred EEEEEECCcce-EEEEEEEEEEcCCCccccccccceEEECCCCEEEEecCCcccccCCCCceEEEecCCeeCCCCCceeE
Confidence 99999998875 4566788888765432 2233457899999999999 788899999999999988654 444
Q ss_pred Eecc-ceEEEccCccCCCeEEEEEEEeCCe----eEEEEEEEEEee-----CCeEEecCCCcEEeeCCeEEEEEEE---e
Q psy574 147 VLPS-RSLQLSDVRLEDAGEYVCEAENAVG----KISASATLTVQM-----APIVRERPSDLRLEVGRDAVFLCGI---E 213 (977)
Q Consensus 147 ~~~~-~~L~I~~v~~~D~G~Y~C~a~n~~g----~~~~~~~L~V~~-----~p~~~~~p~~~~v~~G~~v~L~C~~---~ 213 (977)
+..+ +.|.|.+++.+|+|.|+|.|.|..| ..+..+.|.|.. +|.+...+....+.+|+.++|.|.+ .
T Consensus 175 ~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~~~~~l~V~~~~~~~~P~i~~~~~~~~v~~G~~v~L~C~~~~~~ 254 (339)
T 3o4o_C 175 SVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISASLGSRLTIPCKVFLGT 254 (339)
T ss_dssp ECTTSSEEEESSCCGGGCEEEEEEEECCBTTBCCEEEEEEEEEEECCCCCCCCEECCCSCCCCCCCCSCCCCCCCEEESS
T ss_pred EcCCcceEEEcccCHhhCeEEEEEEEECCCCeEEEEEEEEEEEEEcCCCCCCCEEecCCceeEeccCCCEEEEEEEECCC
Confidence 4433 5899999999999999999999877 467788888874 5677777777789999999999999 8
Q ss_pred cCC-CCeEEEEEcCeeeeecCC----CccccEEEEEccCCc----eEEEEeecccCCC-CeEEEEEEEcCCCceeEEEEE
Q psy574 214 GSP-PPSTFWMLEGNRSLIYPG----DRVDNIQAEITSDGM----NLLKIQNVSRTAA-PLIILCLGVNAAGSDLARASL 283 (977)
Q Consensus 214 g~p-~~~i~W~~~g~~~~~~~~----~~~~~~~~~~~~~g~----s~L~I~~v~~~d~-G~Y~~C~a~n~~g~~~~~~~l 283 (977)
|.| .+.+.|++++..+..... ....++.... +|. +.|.|.++..+|. |.|+ |.|.|..|.....+.+
T Consensus 255 g~P~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~L~i~~v~~~d~~G~Y~-C~a~N~~G~~~~~~~~ 331 (339)
T 3o4o_C 255 GTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSE--NNENYIEVPLIFDPVTREDLHMDFK-CVVHNTLSFQTLRTTV 331 (339)
T ss_dssp SCCSSCEEEEESSSSCSSSSSCSSSCEECCCEECCC--SSSCEEEECCEECSSCCCSCCCCCE-EEEEETTEEECCBCCC
T ss_pred CCCCCceEEEEECCeecccccccccceecceEEecc--cCceEEEEEEEEEEechhhcCccEE-EEEEeccCceEEEEEh
Confidence 999 889999999876532111 0112222222 221 2799999999997 9999 9999999998877766
Q ss_pred EEE
Q psy574 284 TVS 286 (977)
Q Consensus 284 ~V~ 286 (977)
.+.
T Consensus 332 ~~~ 334 (339)
T 3o4o_C 332 KEH 334 (339)
T ss_dssp CC-
T ss_pred hHh
Confidence 544
No 73
>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins, protein-protein interactions, C-type lectin domain; 2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1
Probab=99.96 E-value=1e-26 Score=251.41 Aligned_cols=263 Identities=17% Similarity=0.156 Sum_probs=207.5
Q ss_pred CCCCCCCCCeEEeeCCCceEEEEEcCCCCCCcccceEEEEEeecCCCCCCCCCCCCcccEEEeceecCcCeEEEEccCCC
Q psy574 396 TYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVG 475 (977)
Q Consensus 396 ~~p~~P~~~~v~~~~~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~i~~L~p~ 475 (977)
..|.+|.++.+...+.+++.|+|.++. +.+.+|.|+|+...... .|..........++.+.+|.|+
T Consensus 13 ~~p~~P~~l~~~~~~~~sv~l~W~~~~----~~~~~Y~v~~~~~~~~~----------~~~~~~~~~~~~~~~i~~L~p~ 78 (283)
T 1tdq_A 13 PVIDGPTQILVRDVSDTVAFVEWTPPR----AKVDFILLKYGLVGGEG----------GKTTFRLQPPLSQYSVQALRPG 78 (283)
T ss_dssp CSSCCCEEEEEEEECSSCEEEEEECCS----SCCSEEEEEEEESSSSC----------CCEEEEECTTCSEEEECSCCTT
T ss_pred cCCCCCcEEEEEecCCCeEEEEEECCC----CceeEEEEEEEEecCCC----------CcEEEEeCCCCCEEEecCCCCC
Confidence 468999999999999999999999986 46889999997654332 5555555667889999999999
Q ss_pred CeEEEEEEEEcCCCCCCCCCCCceEEeeccccccccccCCcceeecCCCCCCCcchHHHHhhcccccCCceEEEEEeeEe
Q psy574 476 LTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPM 555 (977)
Q Consensus 476 t~Y~~~V~a~n~~G~s~~S~~s~~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~g~~~~~~~~~l~~~~~~~~~~l~~~~~ 555 (977)
+.|.|+|+|.|..|.+.+. ...+.+ + +.++.++++...
T Consensus 79 t~Y~~~V~a~~~~g~s~~~--~~~~~t----~------------------------------------p~~P~~l~~~~~ 116 (283)
T 1tdq_A 79 SRYEVSISAVRGTNESDAS--STQFTT----E------------------------------------IDAPKNLRVGSR 116 (283)
T ss_dssp CEEEEEEEEEETTEECCCE--EEEEEC----C------------------------------------CCCCEEEEEEEE
T ss_pred CEEEEEEEEECCCCCCCCe--eEEEEC----C------------------------------------CCCCCceEEEec
Confidence 9999999999988776432 111111 1 112367899999
Q ss_pred CCCeEEEEEEecCCCccceEEEEEEecCCCCCceEEEEeecCc---cceEEECCCCCCcEEEEEEEEeecceeCCCCCce
Q psy574 556 TSTSVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGE---ASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLR 632 (977)
Q Consensus 556 ~~tsv~lsW~~p~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~---~~~~~i~~L~p~t~Y~~~V~a~n~~g~g~~s~~~ 632 (977)
+.++|.|+|++|. +.+.+|.|+|+..+. ..+....+. .+ ..++.|.+|.|++.|.|+|+|.|..|.|.+.. +
T Consensus 117 ~~~sv~l~W~~p~-~~i~~Y~v~~~~~~~-~~~~~~~~~--~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~g~s~~~~-~ 191 (283)
T 1tdq_A 117 TATSLDLEWDNSE-AEAQEYKVVYSTLAG-EQYHEVLVP--KGIGPTTKTTLTDLVPGTEYGVGISAVMNSKQSIPAT-M 191 (283)
T ss_dssp CSSCEEEEEECCS-SCCSEEEEEEEETTC-CCCEEEEEE--CCSSSEEEEEECSCCTTCEEEEEEEEEETTEECCCEE-E
T ss_pred CCCeEEEEecCCC-CCccEEEEEEEeCCC-CcceEEECC--CCCcccceEEEecCCCCCEEEEEEEEEeCCCCCcceE-E
Confidence 9999999999986 579999999998764 444343333 33 78999999999999999999999998775432 3
Q ss_pred EEeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCcceEEEEecCCcCeEEecCCCCCceE
Q psy574 633 AVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRY 712 (977)
Q Consensus 633 ~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y 712 (977)
.+.| . |. +|.++++...+.+++.|+|++| +|.|.+|.|+|+..+. ......+..+.++++|.+|+|++.|
T Consensus 192 ~~~t--~-~~-~P~~l~~~~~~~~sv~l~W~~p-----~~~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~i~~L~p~t~Y 261 (283)
T 1tdq_A 192 NART--E-LD-SPRDLMVTASSETSISLIWTKA-----SGPIDHYRITFTPSSG-ISSEVTVPRDRTSYTLTDLEPGAEY 261 (283)
T ss_dssp EEEC--C-CC-CCEEEEEEEECSSCEEEEEECC-----CSCCSEEEEEEECSSS-CCEEEEEESSCSEEEECCCCTTCCE
T ss_pred EecC--C-CC-CCCccEEeEecCCEEEEEEeCC-----CCcccEEEEEEEcCCC-CeeEEEeCCCccEEEECCCCCCCEE
Confidence 3333 2 22 6789999998999999999987 4789999999988553 2344566778899999999999999
Q ss_pred EEEEEEEcCCCcCCCCC
Q psy574 713 SVSLAATNRAGTGPYSR 729 (977)
Q Consensus 713 ~~~V~A~~~~G~g~~S~ 729 (977)
.|+|+|+|.+|.|+.+.
T Consensus 262 ~~~V~A~~~~g~s~~~~ 278 (283)
T 1tdq_A 262 IISITAERGRQQSLEST 278 (283)
T ss_dssp EEEEEEEETTEECCCEE
T ss_pred EEEEEEEcCCCCCccee
Confidence 99999999999888664
No 74
>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}
Probab=99.96 E-value=3.4e-26 Score=268.62 Aligned_cols=347 Identities=18% Similarity=0.209 Sum_probs=224.2
Q ss_pred ecccceEEeCCCcEEEEEECCCCCCC----CeEEEEeC--CEE---e-e----------cCCCceEEEecC-----cEEE
Q psy574 10 VQPKSQRVAAGDTALLECGPPRGHPE----PTLVWKKN--GHP---I-D----------FENSKRLRLVDG-----TNLA 64 (977)
Q Consensus 10 ~~p~~~~v~~G~~v~L~C~~~~g~P~----~~v~W~k~--g~~---l-~----------~~~~~r~~~~~~-----g~L~ 64 (977)
.+|..+.+.+|++++|.|.+ .+.+. ..|.|+|+ |+. + . ....+|+.+..+ .+|.
T Consensus 5 ~qp~~v~v~~G~~v~L~C~~-~~~~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~ 83 (512)
T 1zvo_C 5 QESGPGLVKPSETLSLTCIV-SGGPIRRTGYYWGWIRQPPGKGLEWIGGVYYTGSIYYNPSLRGRVTISVDTSRNQFSLN 83 (512)
T ss_pred ECCCCEEEcCCCCEEEEEEE-cccccCCCCeeEEEEEeCCCCCcEEEEEEecCCCEEECCccCCceEEEecCCCCEEEEE
Confidence 45788999999999999998 44332 67999985 321 1 0 112467776632 4799
Q ss_pred EcCCCCCCCeEEEEEEEecCc----------e--eeeEeEEEEEEc----CCeEEe-CCCceEEeCCCeEEEEEEeccc-
Q psy574 65 IQDSRKTDDGRYQCVVKNVAG----------T--RESTDAVLRVLV----KPYIIR-GPKDTTVSASSIIVFECSVGGD- 126 (977)
Q Consensus 65 I~~v~~~D~G~Y~C~a~n~~g----------~--~~s~~~~l~V~~----~P~~~~-~p~~~~v~~G~~v~l~C~v~g~- 126 (977)
|.+++.+|+|.|.|.+.+..+ . .....+.|.|.. +|.+.. .+.......|+.++|.|.+.|.
T Consensus 84 I~~v~~~Dsg~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~~~~~v~L~C~~~g~~ 163 (512)
T 1zvo_C 84 LRSMSAADTAMYYCARGNPPPYYDIGTGSDDGIDVWGQGTTVHVSSAPTKAPDVFPIISGCRHPKDNSPVVLACLITGYH 163 (512)
T ss_pred ECcCCHHHCEEEEEEEECCCCccccccccccccccccCceEEEecccCCcCCeEEeccCCcccccCCCeEEEEEEEEeee
Confidence 999999999999999987642 0 112345777763 454442 2322212357899999999776
Q ss_pred Cce-EEEEEECCeeCC--CCceEE------eccceEEEccCccCCCeEEEEEEEeCCeeEEEEE-----------EEEEe
Q psy574 127 AVL-TVHWKRLGSAMP--EDRMSV------LPSRSLQLSDVRLEDAGEYVCEAENAVGKISASA-----------TLTVQ 186 (977)
Q Consensus 127 p~~-~i~W~k~~~~l~--~~~~~~------~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~-----------~L~V~ 186 (977)
|.+ .|+|++++.... ...... .....|.|.....+ .|.|+|.|.|..+.....+ .+.+.
T Consensus 164 P~p~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~-~g~ytC~v~n~~~~~~~~~~~~~~~~~~~~~v~l~ 242 (512)
T 1zvo_C 164 PTSVTVTWYMGTQSQPQRTFPEIQRRDSYYMTSSQLSTPLQQWR-QGEYKCVVQHTASKSKKEIFRWPESPKAQASSVPT 242 (512)
T ss_pred cCceEEEEEcCcccCceEecCceecCCCCEEEEEEEEEcHHHcC-CceEEEEEEeCCCCceEEEecCCCCCCcCCEEEEe
Confidence 765 899999754321 000001 11235888888777 9999999999887654433 23333
Q ss_pred eC----------------------------------------------------CeEE-ecCCCcEEeeCCeEEEEEEEe
Q psy574 187 MA----------------------------------------------------PIVR-ERPSDLRLEVGRDAVFLCGIE 213 (977)
Q Consensus 187 ~~----------------------------------------------------p~~~-~~p~~~~v~~G~~v~L~C~~~ 213 (977)
.+ |.+. ..|....+.+|+.++|.|.+.
T Consensus 243 ~pp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~g~~~~L~C~v~ 322 (512)
T 1zvo_C 243 AQPQAEGSLAKATTAPATTRNTGRGGEEKKKEKEKEEQEERETKTPECPSHTQPLGVYLLTPAVQDLWLRDKATFTCFVV 322 (512)
T ss_pred CCCchhccccccccCchhhccCcccccceeccCCcccccccCcccccCCCCCCCCEEEEECCChHHhccCCceEEEEEEe
Confidence 22 3332 234444567899999999999
Q ss_pred cCCCC--eEEEEEcCeeeeecCC------CccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEE
Q psy574 214 GSPPP--STFWMLEGNRSLIYPG------DRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTV 285 (977)
Q Consensus 214 g~p~~--~i~W~~~g~~~~~~~~------~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V 285 (977)
+..++ .|.|+++|..+..... ...+.|... +.|.|..+..+|.|.|+ |.|.|..+... ...+..
T Consensus 323 g~~P~~~~i~W~k~g~~~~~~~~~~~~~~~~~gt~~~~------s~L~i~~~~~~d~g~y~-C~a~n~~~~~~-~~~~~~ 394 (512)
T 1zvo_C 323 GSDLKDAHLTWEVAGKVPTGGVEEGLLERHSNGSQSQH------SRLTLPRSLWNAGTSVT-CTLNHPSLPPQ-RLMALR 394 (512)
T ss_pred ceECCCeEEEEEECCEeccCceeccceecCCCCeEEEE------EEEEEchHHhcCCCeEE-EEEEeCCCCCC-ceeEEe
Confidence 87443 8999999987431000 011122221 47999999999999999 99999987654 333322
Q ss_pred EC-CCCCCCCeEE-eCCCceeecCCCcEE-EEEEEcc--Cc--eEEEEECCEEcCCCC----cEEEecCce-------EE
Q psy574 286 SG-PDPNPPPVIL-FGPANQTLPLRSEAR-LRCQVRG--EG--SVQWWRGEREVGSGP----RVNVTGDGS-------LV 347 (977)
Q Consensus 286 ~~-~~~~~pp~i~-~~p~~~~v~~g~~~~-L~C~~~~--~p--~i~W~~~g~~l~~~~----~~~~~~~~s-------l~ 347 (977)
.. .....+|.+. .++.. .|+.+. |.|.+.+ ++ .+.|++||..+.... ......+++ |.
T Consensus 395 ~~~~~~~~~p~v~~~~~~~----~~~~~~~L~C~~~g~~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~dg~~~~~~s~L~ 470 (512)
T 1zvo_C 395 EPAAQAPVKLSLNLLASSD----PPEAASWLLCEVSGFSPPNILLMWLEDQREVNTSGFAPARPPPQPGSTTFWAWSVLR 470 (512)
T ss_pred ecCCCCCCCCEEEEEccCc----CCCCceEEEEEEeeeCCCCcEEEEEECCeECcCccccccceeECCCCCEEEEEEEEE
Confidence 11 1001244443 33332 788899 9999998 32 589999999886542 122233443 44
Q ss_pred EeccCCCCCeEEEEEEEcCCCce
Q psy574 348 LTDVTKEDSGEYTCVVKSPHGSA 370 (977)
Q Consensus 348 I~~v~~~d~G~Y~C~a~n~~G~~ 370 (977)
|......+.|.|+|.|.|.....
T Consensus 471 v~~~~~~~~g~YtC~v~h~~l~~ 493 (512)
T 1zvo_C 471 VPAPPSPQPATYTCVVSHEDSRT 493 (512)
T ss_pred ECchhcCCCCeEEEEEEecCCCC
Confidence 55555556999999999987654
No 75
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}
Probab=99.95 E-value=2e-27 Score=258.01 Aligned_cols=263 Identities=16% Similarity=0.212 Sum_probs=207.7
Q ss_pred EcCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceEEeccceEEEccCccCCCeEEEEEEEeCCee
Q psy574 97 LVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGK 176 (977)
Q Consensus 97 ~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~ 176 (977)
..+|.+...+.+..+.+|++++|.|.+.| .+.|+|++..+ ......+..|.|.+++.+|+|.|+|.|.| |.
T Consensus 10 ~~~P~i~~~~~~~~v~~G~~v~l~C~~~~----~i~W~~~~~~~---~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n--g~ 80 (290)
T 2o26_X 10 PSPPSIHPAQSELIVEAGDTLSLTCIDPD----FVRWTFKTYFN---EMVENKKNEWIQEKAEATRTGTYTCSNSN--GL 80 (290)
T ss_dssp --CCEESSCSSEEEEETTSCEEEEEECTT----EEEEEEECSSS---CEEEECSSEEEETTCCGGGCEEEEEEESS--SC
T ss_pred CCCCEEeCCCCeEEEcCCCcEEEEECCCC----cEEEecCCcce---eeecCCCceEEEeccCHHhCeEEEEEeeC--Cc
Confidence 35688887888889999999999999987 89999999887 22333558999999999999999999999 44
Q ss_pred EEEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEEecCCC-CeEEEE-EcCeeeeecCCCccccEEEEEccCCceEEEE
Q psy574 177 ISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPP-PSTFWM-LEGNRSLIYPGDRVDNIQAEITSDGMNLLKI 254 (977)
Q Consensus 177 ~~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~-~~i~W~-~~g~~~~~~~~~~~~~~~~~~~~~g~s~L~I 254 (977)
...+.|.|..+|.+...+....+.+|+.+.|.|.+.+ |. +.+.|+ ++|..+. ...++.... .+ .|.|
T Consensus 81 -~~~~~l~V~~~~~~~~~~~~~~~~~g~~v~l~C~~~~-p~~~~v~W~~~~g~~l~-----~~~~~~~~~--~~--~L~i 149 (290)
T 2o26_X 81 -TSSIYVFVRDPAKLFLVGLPLFGKEDSDALVRCPLTD-PQVSQYSLIECDGKSLP-----TDLTFVPNP--KA--GITI 149 (290)
T ss_dssp -EEEEEEEEECSSCCBCCCCCEEEETTSCEEECCCBSC-CSCEEEEEEETTSCCCC-----TTCEEEEET--TT--EEEE
T ss_pred -cEEEEEEEeCCCcccccccceEEecCCeEEEeCcCCC-CCCceEEEEeCCCcCCC-----CCCceeeCC--CC--CEEE
Confidence 7888999998887777778889999999999999985 77 899995 5665542 233444332 24 8999
Q ss_pred eecccCCCC-eEEEEEEEcCCCcee-EEEEEEEECCCCCCCCeEEeCCCceeecCCCcEEEEEEEcc--Cce-EEEEECC
Q psy574 255 QNVSRTAAP-LIILCLGVNAAGSDL-ARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG--EGS-VQWWRGE 329 (977)
Q Consensus 255 ~~v~~~d~G-~Y~~C~a~n~~g~~~-~~~~l~V~~~~~~~pp~i~~~p~~~~v~~g~~~~L~C~~~~--~p~-i~W~~~g 329 (977)
.+++.+|+| .|+ |.|.|..+... ..+.|.|... ...+|.+...+....+..|+.+.|.|.+.+ .|. +.|++++
T Consensus 150 ~~v~~~d~G~~Y~-C~a~n~~~~~~s~~~~l~V~~~-~~~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~~i~W~~~~ 227 (290)
T 2o26_X 150 KNVKRAYHRLCVR-CAAQRDGTWLHSDKFTLKVREA-IKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMN 227 (290)
T ss_dssp ESCCGGGTTCEEE-EEEEETTEEEECCCEEEEEECC-CCSCCEEECSCSBCCCCTTCCEEEEEEEEESSTTCEEEEEEES
T ss_pred ecccHHHCCCEEE-EEEEECCceEEeEEEEEEEEeC-CCCCCccccCCCcceEecCCcEEEEEEEecCCcceeEEEecCC
Confidence 999999999 999 99999855533 3467777731 123788888888889999999999999999 555 9999998
Q ss_pred EEc----CCCCcE------EEecCceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEECC
Q psy574 330 REV----GSGPRV------NVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESP 381 (977)
Q Consensus 330 ~~l----~~~~~~------~~~~~~sl~I~~v~~~d~G~Y~C~a~n~~G~~~~s~~l~v~~~ 381 (977)
..+ ...... .....+.|.|.++...|+|.|+|.|.|..|..+..+.|.|.++
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~ 289 (290)
T 2o26_X 228 PQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKVVEK 289 (290)
T ss_dssp SSEEECCCEECCEEEEETTEEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEECC---
T ss_pred CCCccceeecccccccCceeeEEEEEEEEcCCCcccCeEEEEEEeCCCCcEEEEEEEEEEeC
Confidence 763 222221 1233457999999999999999999999999988888887643
No 76
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY acidic protein fold, fibronectin type III fold, hormone- growth factor complex; NMR {Homo sapiens}
Probab=99.95 E-value=1e-26 Score=282.06 Aligned_cols=308 Identities=13% Similarity=0.135 Sum_probs=225.1
Q ss_pred CCeEEEEEEEcCCCceEEEEEEEEECCCCCCCcccCCCCCCCCCCCC-CCCeEEeeCCCceEEEEEcCCCCCCcccceEE
Q psy574 355 DSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPP-TKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQ 433 (977)
Q Consensus 355 d~G~Y~C~a~n~~G~~~~s~~l~v~~~~~~~~~~~~~~~~~~~p~~P-~~~~v~~~~~~sv~lsW~~p~~~~~~~i~~Y~ 433 (977)
..|.+.| +.|..|.........+. ..|.+| .++.+..++.+++.|+|.++.+.+...+. |.
T Consensus 134 c~g~~~C-c~n~cG~~C~~P~~~~~----------------~~P~~P~~~l~v~~~~~~sv~l~W~pp~~~~~~~i~-Y~ 195 (680)
T 1zlg_A 134 CSGVKKC-CSNGCGHTCQVPKTLYK----------------GVPLKPRKELRFTELQSGQLEVKWSSKFNISIEPVI-YV 195 (680)
T ss_pred CCCcccc-ccccccccccccceeee----------------cccccccccceEEeccCceEEEEEeCCCCCCCCCEE-EE
Confidence 5677777 45666654332222222 568888 89999999999999999998654556667 99
Q ss_pred EEEeecCCCCCCCCCCCCcccEEEeceecCcCeEEEEccCCCCeEEEEEEEEcCCCCCCCCCCCceEEeecccccccccc
Q psy574 434 VEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSE 513 (977)
Q Consensus 434 I~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~G~s~~S~~s~~~~~~~~~p~~~p~~ 513 (977)
|+|+...... ........|..+.. ....+++|.+|.|++.|.|+|+|+|..|.+.++..+..+++.....
T Consensus 196 V~~r~~~g~~---~~~~~~~~w~~v~~-~~~~~~~i~~L~P~t~Y~frV~A~n~~G~~~~ss~s~~~~t~~~~~------ 265 (680)
T 1zlg_A 196 VQRRWNYGIH---PSEDDATHWQTVAQ-TTDERVQLTDIRPSRWYQFRVAAVNVHGTRGFTAPSKHFRSSKDPS------ 265 (680)
T ss_pred EEEEECCCCC---cCccccCceEEEEe-cCCCeEEeCCCCCCCEEEEEEEEEeCCCCCCCCCCccceEcCCCCC------
Confidence 9998753200 00001137887653 4567899999999999999999999999555555555555522201
Q ss_pred CCcceeecCCCCCCCcchHHHHhhcccccCCceEEEEEeeEe--CCC---eEEEEEEec--CCCccceEEEEEEec-C--
Q psy574 514 GGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPM--TST---SVKLTWEIL--NTDYIEGVYIYSRGL-D-- 583 (977)
Q Consensus 514 ~~~~~~~~~P~~~~~g~~~~~~~~~l~~~~~~~~~~l~~~~~--~~t---sv~lsW~~p--~~~~i~~Y~v~y~~~-~-- 583 (977)
++.++.++++... +.+ +|.|+|++| .++.|.+|+|+|+.. +
T Consensus 266 -----------------------------pp~~P~~l~~~~~~~~~~g~~sv~l~W~pP~~~~g~i~~Y~V~~~~~~~~~ 316 (680)
T 1zlg_A 266 -----------------------------APPAPANLRLANSTVNSDGSVTVTIVWDLPEEPDIPVHHYKVFWSWMVSSK 316 (680)
T ss_pred -----------------------------CCCCCCceEeeeeeecCCCceEEEEEecCCCCCCCceeEEEEEEEeccccc
Confidence 1222357788877 788 999999988 678899999999932 1
Q ss_pred ---CCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeecceeCCCCCc---eEEeccCCCCCCCCceeEEEEecCcE
Q psy574 584 ---PPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNL---RAVRTLECEPSGVPQLTDPVLLNATS 657 (977)
Q Consensus 584 ---~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~g~~s~~---~~~~T~~~~P~~~P~~v~~~~~~~~s 657 (977)
....|....+ ..+.++++|.+|.|++.|.|+|+|.|..|.|+++.. +.++|.+.+|. |.++.+...+.++
T Consensus 317 ~~~~~~~~~~~~v--~~~~~~~~l~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~v~~~T~~~~P~--p~~l~~~~~s~ts 392 (680)
T 1zlg_A 317 SLVPTKKKRRKTT--DGFQNSVILEKLQPDCDYVVELQAITYWGQTRLKSAKVSLHFTSTHATNN--KEQLVKTRKGGIQ 392 (680)
T ss_pred ccCCccceEEEEE--cCCeeEEEeCCCCCCCEEEEEEEEEECCCcCCCCCCceeEEEECCCCCCC--ccccccccccCcc
Confidence 1234554433 246689999999999999999999999999988876 88999999886 7789988888888
Q ss_pred EEE-----------EeeCCCCCCCCeeeeEEEEEEEecCCcc--------------------eEEEEecCCcCeEEecCC
Q psy574 658 VLL-----------KWKPPPVGTHNGVIRTYQIIVGGGNNSA--------------------LINMTVSASTPTLLLTNL 706 (977)
Q Consensus 658 v~v-----------~W~~p~~~~~ng~i~~Y~v~~~~~~~~~--------------------~~~~~~~~~~~~~~l~~L 706 (977)
+.| +|.+|. ..+ .+.+|+|.|+..+... ..........++++|.+|
T Consensus 393 i~lp~~~~~~~~~l~W~~P~--~~~-~~~~y~v~w~~~~~~~v~~Y~V~w~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 469 (680)
T 1zlg_A 393 TQLPFQRRRPTRPLEVGAPF--YQD-GQLQVKVYWKKTEDPTVNRYHVRWFPEACAHNRTTGSEASSGMTHENYIILQDL 469 (680)
T ss_pred ccccccccCCCccccccCCc--ccC-CcceEEEEEeCCCCCccceEEEEEeeeecccCCCCcceeeeeeccCceEEecCC
Confidence 877 999984 333 4568999887643211 011123456788999999
Q ss_pred CCCceEEEEEEEEcCCCcCC
Q psy574 707 SAGIRYSVSLAATNRAGTGP 726 (977)
Q Consensus 707 ~p~t~Y~~~V~A~~~~G~g~ 726 (977)
+|++.|.|+|+|+|.+|.|.
T Consensus 470 ~p~t~Y~~~V~A~n~~G~s~ 489 (680)
T 1zlg_A 470 SFSCKYKVTVQPIRPKSHSK 489 (680)
T ss_pred CCCCeEEEEEEEecCCCCCC
Confidence 99999999999999999776
No 77
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Probab=99.95 E-value=2e-27 Score=262.87 Aligned_cols=264 Identities=19% Similarity=0.317 Sum_probs=186.6
Q ss_pred ccceecccceEEeCCCcEEEEEECCCCC-CCCeEEEEeCCEEe----ec---CCCceEEEe--------cCcEEEEcCCC
Q psy574 6 EEFRVQPKSQRVAAGDTALLECGPPRGH-PEPTLVWKKNGHPI----DF---ENSKRLRLV--------DGTNLAIQDSR 69 (977)
Q Consensus 6 ~~~~~~p~~~~v~~G~~v~L~C~~~~g~-P~~~v~W~k~g~~l----~~---~~~~r~~~~--------~~g~L~I~~v~ 69 (977)
..|...|.++.+.+|++++|.|.+ .+. |.+.|.|+|++..+ .. ....|+.+. .+++|.|.+++
T Consensus 4 ~~v~~~p~~~~v~~G~~v~L~C~~-~~~~p~~~v~W~k~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~ 82 (327)
T 2wng_A 4 LQVIQPDKSVSVAAGESAILHCTV-TSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNIT 82 (327)
T ss_dssp CCEECCCSEEEEETTSCEEECCEE-SCCCSCCCEEEEESCSTTCEEEEETTSSCCTTEEECC---CTTCCBCCEEECSCC
T ss_pred eEEEcCCCceEEecCCcEEEEEEc-cCcCCCceEEEEECCCCCceEEEEcCCCCcceeeeecccccccCceeEEEEccCc
Confidence 356777889999999999999999 555 88999999987532 11 112355542 24579999999
Q ss_pred CCCCeEEEEEEEecCce----eeeEeEEEEEEcCCe--EEeCCCceEEeCCCeEEEEEEecccCce--EEEEEECCeeCC
Q psy574 70 KTDDGRYQCVVKNVAGT----RESTDAVLRVLVKPY--IIRGPKDTTVSASSIIVFECSVGGDAVL--TVHWKRLGSAMP 141 (977)
Q Consensus 70 ~~D~G~Y~C~a~n~~g~----~~s~~~~l~V~~~P~--~~~~p~~~~v~~G~~v~l~C~v~g~p~~--~i~W~k~~~~l~ 141 (977)
.+|+|.|+|.|.|..+. ..+..+.|.|..+|. .+..| ...+.+|+.+.|.|.+.|.|.+ .+.|+|++..+.
T Consensus 83 ~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~p~~p~i~~~-~~~~~~g~~~~l~C~~~g~p~~~~~v~W~k~g~~l~ 161 (327)
T 2wng_A 83 PADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGP-AARATPQHTVSFTCESHGFSPRDITLKWFKNGNELS 161 (327)
T ss_dssp GGGCEEEEEEEEESSTTCEEEEECCCEEEEEEBCCCCCEEECC-SSCBCTTCEEEEEEEEEEEBSSCCEEEEEETTEECC
T ss_pred cccCeEEEEEeecCCCcceeEeecCcEEEEEEecCCCceeecc-ccccCCCCEEEEEEEEeCccCCCcEEEEEECCEEcc
Confidence 99999999999998653 123456888876653 23334 4678899999999999888765 899999999887
Q ss_pred CCceEEe---------ccceEEEccCccCCCeEEEEEEEeCCee---EEEEEEE--EEeeCCeEEecCCCcEEeeCCeEE
Q psy574 142 EDRMSVL---------PSRSLQLSDVRLEDAGEYVCEAENAVGK---ISASATL--TVQMAPIVRERPSDLRLEVGRDAV 207 (977)
Q Consensus 142 ~~~~~~~---------~~~~L~I~~v~~~D~G~Y~C~a~n~~g~---~~~~~~L--~V~~~p~~~~~p~~~~v~~G~~v~ 207 (977)
....... ....|.|.....+|.|.|+|.|.|..+. ....+.+ .+..+|.+...+.. +.+|+.++
T Consensus 162 ~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~~g~Y~C~a~n~~~~~~~~~~~~~~~~~v~~~P~i~~~~~~--~~~G~~v~ 239 (327)
T 2wng_A 162 DFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTLEVTQQP--VRAENQVN 239 (327)
T ss_dssp CEEEEEECSSCCSCEEEEEEEEEECCTTGGGCEEEEEEECTTSCSCCEEEEEEGGGTBCBCCEEEEEEEC--CSSTTCCE
T ss_pred ccccccccccCCCceEEEEEEEEechhcCcCceEEEEEeccccCCCcccceEEeccccCCCCEEEEecCC--cCCCCcEE
Confidence 5433222 1235777777777889999999998764 3444554 44578887766554 77999999
Q ss_pred EEEEEecCC-CC-eEEEEEcCeeeeecCCCccccEEEEEccCCc----eEEEEeecccCCCCeEEEEEEEcCCCceeE
Q psy574 208 FLCGIEGSP-PP-STFWMLEGNRSLIYPGDRVDNIQAEITSDGM----NLLKIQNVSRTAAPLIILCLGVNAAGSDLA 279 (977)
Q Consensus 208 L~C~~~g~p-~~-~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~----s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~ 279 (977)
|.|.+.|.+ ++ .+.|+++|..+.... ...+....+|. +.|.|..+..+|.|.|+ |.|.|..+....
T Consensus 240 l~C~~~g~~p~~~~v~W~k~g~~l~~~~-----~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~-C~a~N~~~~~~s 311 (327)
T 2wng_A 240 VTCQVRKFYPQRLQLTWLENGNVSRTET-----ASTVTENKDGTYNWMSWLLVNVSAHRDDVKLT-CQVEHDGQPAVS 311 (327)
T ss_dssp EEEEEEEEBSSCEEEEEEETTEEEEEEE-----CCSCEECTTSCEEEEEEEEC-------CCEEE-EEEEETTCCCEE
T ss_pred EEEEEccccCCCcEEEEEECCeEccCcc-----cCceEECCCCcEEEEEEEEEccccccCCCEEE-EEEEeCCCCCch
Confidence 999999854 44 799999998874321 11111121232 37899999999999999 999999986533
No 78
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.95 E-value=9e-29 Score=274.53 Aligned_cols=271 Identities=24% Similarity=0.364 Sum_probs=139.2
Q ss_pred eCCCceEEeCCCeEEEEEEeccc-CceEEEEEECCeeCCCCceEEeccceEEEccCccCCCeEEEEEEEeCCeeEEEEEE
Q psy574 104 RGPKDTTVSASSIIVFECSVGGD-AVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASAT 182 (977)
Q Consensus 104 ~~p~~~~v~~G~~v~l~C~v~g~-p~~~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~ 182 (977)
..|.+..+.+|+++.|.|.+.+. |.+.+.|+|++..+.........++.|.|.+++.+|+|.|+|.|.|. |.....+.
T Consensus 13 ~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~-~~~~~~~~ 91 (334)
T 1ry7_B 13 GQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVGPQRLQVLNASHEDSGAYSCRQRLT-QRVLCHFS 91 (334)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcCcEEEecCCcEEEEeeCCCCCCCcceEEEECCeeCCCcccEEeccceEEEeecccccCEEEEEEEEeC-CeEEEEEE
Confidence 34778899999999999999776 67899999999988654322336789999999999999999999998 77777888
Q ss_pred EEEeeCC----------------------eEEec----CCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCc
Q psy574 183 LTVQMAP----------------------IVRER----PSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDR 236 (977)
Q Consensus 183 L~V~~~p----------------------~~~~~----p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~ 236 (977)
|.|...+ .+... +....+.+|+.++|.|.+.|.|.+.+.|++++..+.... .
T Consensus 92 l~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~--~ 169 (334)
T 1ry7_B 92 VRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEH--R 169 (334)
T ss_dssp ---------------------------CCCCSCCTTCCCCEEEEETTCCEEEECCCCCSSCCEEECCBTTBCCCTTS--S
T ss_pred EEEeccCccccccccccccccccccCCCCEEeccccccceeEEecCCCcEEEEEEccCCCCCeEEEEECCEECcccc--c
Confidence 8887543 22211 123478899999999999999999999999998764211 1
Q ss_pred cccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEECCCCCCCCeEE-eCCCceeecCCCcEEEEE
Q psy574 237 VDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVIL-FGPANQTLPLRSEARLRC 315 (977)
Q Consensus 237 ~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~~~~~~pp~i~-~~p~~~~v~~g~~~~L~C 315 (977)
...+.. ..+...|.|.+++.+|+|.|+ |.|.|..|.....+.|.|...... +|.+. ..|....+..|+.+.|.|
T Consensus 170 ~~~~~~---~~~~~~L~i~~v~~~d~G~Y~-C~a~n~~g~~~~~~~l~V~~~~~~-~p~~~~~~~~~~~~~~G~~v~l~C 244 (334)
T 1ry7_B 170 IGGIKL---RHQQWSLVMESVVPSDRGNYT-CVVENKFGSIRQTYTLDVLERSPH-RPILQAGLPANQTAVLGSDVEFHC 244 (334)
T ss_dssp TTCCCC---CTTTTEEEECSCCGGGCCCEE-EEEEETTEEEEEEEEEEEECCCCS-SCBCCTTCSCCEEEESSCCEEECC
T ss_pred ccceec---ccceEEEEECCCCcccCEEEE-EEEEeCCCCEEEEEEEEEecCCCC-CCceEecCCCceEEeCCCCEEEEE
Confidence 111111 123458999999999999999 999999999888889999874322 23333 345678899999999999
Q ss_pred EEcc--CceEEEEE----CCEEcCCCCc--EEEec----------CceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEE
Q psy574 316 QVRG--EGSVQWWR----GEREVGSGPR--VNVTG----------DGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLR 377 (977)
Q Consensus 316 ~~~~--~p~i~W~~----~g~~l~~~~~--~~~~~----------~~sl~I~~v~~~d~G~Y~C~a~n~~G~~~~s~~l~ 377 (977)
.+.+ .+.+.|++ +|..+....+ +.+.. ...|.|.++...|+|.|+|.|.|..|....++.|.
T Consensus 245 ~~~g~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~ 324 (334)
T 1ry7_B 245 KVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLV 324 (334)
T ss_dssp CCBCSSCEEEEEEECCCGGGCSBCTTSSBCCCCCCCSSCSCSCTTCCCEEECSCCTTSCSEEEEEEEESSCCEEEEEEEE
T ss_pred EEecCCCCeEEEEECCcCCCccccCCCCeeEEEeecCccccccccccEEEEccCCHHHCEEEEEEEeCCCCeEEEEEEEE
Confidence 9998 67899999 6766644322 11111 12799999999999999999999999999999999
Q ss_pred EECCC
Q psy574 378 FESPT 382 (977)
Q Consensus 378 v~~~~ 382 (977)
|...+
T Consensus 325 V~~~~ 329 (334)
T 1ry7_B 325 VLPAE 329 (334)
T ss_dssp EECSC
T ss_pred EEECC
Confidence 98543
No 79
>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A
Probab=99.95 E-value=1.4e-26 Score=252.93 Aligned_cols=270 Identities=12% Similarity=0.152 Sum_probs=192.7
Q ss_pred CCCceeecCCCcEEEEEEEcc---------CceEEEEECCEEcCCCCcEEEec--CceEEEeccCCCCCeEEEEEEEcCC
Q psy574 299 GPANQTLPLRSEARLRCQVRG---------EGSVQWWRGEREVGSGPRVNVTG--DGSLVLTDVTKEDSGEYTCVVKSPH 367 (977)
Q Consensus 299 ~p~~~~v~~g~~~~L~C~~~~---------~p~i~W~~~g~~l~~~~~~~~~~--~~sl~I~~v~~~d~G~Y~C~a~n~~ 367 (977)
.|.+..+..|++++|.|.+.+ .+.|.|+++|..+... ++.+.. .++|.|.++... .|.|+|.|.+.
T Consensus 10 ~P~~~~v~~G~~v~l~C~~~~~~~~~~~~p~p~i~W~~~g~~i~~~-~~~~~~~~~~~L~i~~~~~~-~g~Y~C~a~~~- 86 (303)
T 1i1r_A 10 SPESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKE-QYTIINRTASSVTFTDIASL-NIQLTCNILTF- 86 (303)
T ss_dssp ESSSCEEETTCCEEEEEEECHHHHHHHTCCGGGEEEEETTEECCGG-GCEEEETTEEEEEECSCCCS-EEEEEEEEEET-
T ss_pred ccCCceEeCCCCEEEEEEECCccccccCCChhheEEEECCEECChh-heeeeCCcEEEEEEcCcCCC-ceEEEEecccC-
Confidence 466788999999999999983 4789999999988644 333333 246999999987 49999999884
Q ss_pred Cce---EEEEEEEEECCCCCCCcccCCCCCCCCCCCCCCCeEEeeCCCceEEEEEcCCCCCCcccceEEEEEeecCCCCC
Q psy574 368 GSA---SWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSS 444 (977)
Q Consensus 368 G~~---~~s~~l~v~~~~~~~~~~~~~~~~~~~p~~P~~~~v~~~~~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~ 444 (977)
|.. ...+.+.+. .+|++|.++.+...+.+++.|+|.++.+. + .+.+|.|+|+.....
T Consensus 87 g~~~~~~~~~~l~v~----------------~~P~~P~~l~~~~~~~~~v~l~W~~~~~~-~-~~~~Y~v~~~~~~~~-- 146 (303)
T 1i1r_A 87 GQLEQNVYGITIISG----------------LPPEKPKNLSCIVNEGKKMRCEWDGGRET-H-LETNFTLKSEWATHK-- 146 (303)
T ss_dssp TTEEEEEEEEEEEEE----------------CCCCCCEEEEEEEETTSCCEEEEECCSCC-S-SCCEEEEEEEETTEE--
T ss_pred CCcceEEEEEEEecc----------------CCCCCCeeeEEEECCCCcEEEEccCCCCC-C-CCcCEEEEEEecCCC--
Confidence 433 233445554 45899999999888888999999999873 3 457999998754211
Q ss_pred CCCCCCCcccEEEeceecCcCeEEEEccCCCCeEEEEEEEEcCCCCCCCCCCCceEEeeccccccccccCCcceeecCCC
Q psy574 445 SPSGDTATATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFP 524 (977)
Q Consensus 445 ~~~~~~~~~~w~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~G~s~~S~~s~~~~~~~~~p~~~p~~~~~~~~~~~P~ 524 (977)
.|.........
T Consensus 147 ---------~~~~~~~~~~~------------------------------------------------------------ 157 (303)
T 1i1r_A 147 ---------FADCKAKRDTP------------------------------------------------------------ 157 (303)
T ss_dssp ---------CCCEECCSSCT------------------------------------------------------------
T ss_pred ---------CccCCCcCCCc------------------------------------------------------------
Confidence 11111111122
Q ss_pred CCCCcchHHHHhhcccccCCceEEEEEeeEeCCCeEEEEEEecCCCccceEEEEEEecCCCCCceEEEEeecCccceEEE
Q psy574 525 DEGRGESLRRARQHLQEGGGSLIELTEVKPMTSTSVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLV 604 (977)
Q Consensus 525 ~~~~g~~~~~~~~~l~~~~~~~~~~l~~~~~~~tsv~lsW~~p~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i 604 (977)
+++.|
T Consensus 158 ---------------------------------------------------------------------------~~~~i 162 (303)
T 1i1r_A 158 ---------------------------------------------------------------------------TSCTV 162 (303)
T ss_dssp ---------------------------------------------------------------------------TEEEC
T ss_pred ---------------------------------------------------------------------------eEEEE
Confidence 44555
Q ss_pred CCC-CCCcEEEEEEEEeecceeCCCCCceEEeccCCCCCCCCceeEEEEe--cCcEEEEEeeCCCCCCCCeeeeEEEEEE
Q psy574 605 TGL-AHYSRYEFFLVPFFGSVDGKPSNLRAVRTLECEPSGVPQLTDPVLL--NATSVLLKWKPPPVGTHNGVIRTYQIIV 681 (977)
Q Consensus 605 ~~L-~p~t~Y~~~V~a~n~~g~g~~s~~~~~~T~~~~P~~~P~~v~~~~~--~~~sv~v~W~~p~~~~~ng~i~~Y~v~~ 681 (977)
.+| .|++.|.|+|.|.|..|.+. +....+.+....++.||.++.+... +.+++.|+|++| ...+|.|++|+|+|
T Consensus 163 ~~L~~p~t~Y~f~V~A~N~~G~~~-s~~~~~~~~~~~~p~pP~~~~v~~~~~~~~sv~l~W~~p--~~~~~~i~~Y~v~y 239 (303)
T 1i1r_A 163 DYSTVYFVNIEVWVEAENALGKVT-SDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNP--SIKSVIILKYNIQY 239 (303)
T ss_dssp SSCCCTTSCEEEEEEEEETTEEEE-CCCEEECGGGGEECCCCEEEEEECCSSSSSCEEEEEECC--GGGGTSCEEEEEEE
T ss_pred CCcCcccccEEEEEEEEcCCCCcc-cCCEEECHHHeEecCCCcceEEEEecCCCCEEEEEECCC--CCCCcccEEEEEEE
Confidence 666 56666666666666666553 2234444444445568899988754 668999999999 55678999999999
Q ss_pred EecCCcceEEEEe---cCCcCeEEecCCCCCceEEEEEEEEcCCCcCCC---CCceEEeecCC
Q psy574 682 GGGNNSALINMTV---SASTPTLLLTNLSAGIRYSVSLAATNRAGTGPY---SRPALLSLTSG 738 (977)
Q Consensus 682 ~~~~~~~~~~~~~---~~~~~~~~l~~L~p~t~Y~~~V~A~~~~G~g~~---S~~~~~~t~~~ 738 (977)
+..+...+..... ....++++|.+|.|++.|.|+|+|+|.+|.|++ |+++.++|.++
T Consensus 240 ~~~~~~~w~~~~~~~~~~~~~~~~l~~L~p~t~Y~~rV~A~n~~G~G~~S~wS~~~~~~T~e~ 302 (303)
T 1i1r_A 240 RTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYED 302 (303)
T ss_dssp EETTCSSCEECCGGGGCSCCSEEEECSCCTTCEEEEEEEEEETTSCSCCCCCCCCEEEECCCC
T ss_pred EeCCCCCceEEccccCCCceeEEEeCCCCCCCEEEEEEEeccCCCCCCcCCCCCccceeCCcC
Confidence 9865443433322 456789999999999999999999999998776 57788877653
No 80
>3lb6_C IL-13, interleukin-13 receptor subunit alpha-2; cytokine, decoy, decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo sapiens} PDB: 3lb6_D*
Probab=99.95 E-value=6.7e-27 Score=262.38 Aligned_cols=287 Identities=11% Similarity=0.097 Sum_probs=174.3
Q ss_pred CCCCCCCCCeEEeeC-CCceEEEEEcCCCC--CCcccceEEEEEeecCCCCCCCCCCCCcccEEEeceecCcCeEEEEcc
Q psy574 396 TYPGPPTKPTLVNQT-ANGLTLAWSRNNQI--GSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNL 472 (977)
Q Consensus 396 ~~p~~P~~~~v~~~~-~~sv~lsW~~p~~~--~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~i~~L 472 (977)
..|.||.++.+.... .+++.|+|.++... .++.+..|.|+|+..... .|...... . ......+
T Consensus 30 v~~~pP~nl~v~~~~~~~~v~LsW~p~~~~~~~~~~~~~Y~v~~~~~~~~-----------~w~~~~~~--~-~~~~~~~ 95 (380)
T 3lb6_C 30 IKVNPPQDFEIVDPGYLGYLYLQWQPPLSLDHFKECTVEYELKYRNIGSE-----------TWKTIITK--N-LHYKDGF 95 (380)
T ss_dssp -CCCCCEEEEEECCSSSSEEEEEEECCCC------CCCEEEEEEEETTCS-----------SCEEEEES--S-SEEEEEC
T ss_pred ccCCcCCceEEEecCcCceEEEEECCCCCccccccceEEEEEEECCCCCC-----------cceEEEec--c-EEEEEee
Confidence 458999999998776 68899999998862 345689999999886532 79887643 2 2344566
Q ss_pred CCCCeEEEEEEEEcC----CCCCCCCCCCceEEeeccccccccccCCcceeecCCCCCCCcchHHHHhhcccccCCceEE
Q psy574 473 TVGLTYTFLVRALNS----HGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIE 548 (977)
Q Consensus 473 ~p~t~Y~~~V~a~n~----~G~s~~S~~s~~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~g~~~~~~~~~l~~~~~~~~~ 548 (977)
..+..|.|+|+|.|. .|.|.+|+++..++. ..+++. ++.+++
T Consensus 96 ~l~~~y~~rV~a~~~~~~~~g~g~~S~~s~~~~~--~~~eg~--------------------------------P~~~P~ 141 (380)
T 3lb6_C 96 DLNKGIEAXIHTLLPWQCTNGSEVQSSWAETTYW--ISPQGI--------------------------------PETXVQ 141 (380)
T ss_dssp CTTSCEEEEEEEECCHHHHSSSCCBCCCEEEEEC--CCCCSC--------------------------------TTSSCE
T ss_pred cCCCceEEEEEeecCCcccCCccCccccchhhcc--cCCCCC--------------------------------CCCCCc
Confidence 779999999999976 788888877766653 111111 133458
Q ss_pred EEEeeEeCCCeEEEEEEec-CCCccceEEEEEEecCCCCCceEEE-Ee-ecCccceEEEC--CCCCCcEEEEEEEEeecc
Q psy574 549 LTEVKPMTSTSVKLTWEIL-NTDYIEGVYIYSRGLDPPASVAMLT-VL-HAGEASGFLVT--GLAHYSRYEFFLVPFFGS 623 (977)
Q Consensus 549 ~l~~~~~~~tsv~lsW~~p-~~~~i~~Y~v~y~~~~~~~~~~~~~-~~-~~~~~~~~~i~--~L~p~t~Y~~~V~a~n~~ 623 (977)
++++...+.+++.++|+++ ..+...+|.|+|+..+.. .+..+. .. ..+....+.+. ++.+++.|.|+|.|.|..
T Consensus 142 nl~C~~~~~~~l~csW~p~~~~~~~~~Y~l~y~~~~~~-~~~~C~~~~~~~g~~~~C~~~~~~~~~~~~Y~i~V~a~n~~ 220 (380)
T 3lb6_C 142 DMDCVYYNWQYLLCSWKPGIGVLLDTNYNLFYWYEGLD-HALQCVDYIKADGQNIGCRFPYLEASDYKDFYICVNGSSEN 220 (380)
T ss_dssp EEEEEEETTTEEEEEEECC------CCEEEEEECTTCS-SCEECSEEEEC--CEEEEECCCCTTCSSSCEEEEEEEC---
T ss_pred EeEEEECCCcEEEEEEcCCCCCCCCccEEEEEEECCCC-ccccCCCccccCCceEEEEeCCCcccceeEEEEEEEEEcCC
Confidence 9999999999999999998 445678999999986642 222221 11 11223356666 568999999999999988
Q ss_pred eeCCCCCceEEeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCC-eeeeEEEEEEEecCCcceEEEEecCCcCeEE
Q psy574 624 VDGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHN-GVIRTYQIIVGGGNNSALINMTVSASTPTLL 702 (977)
Q Consensus 624 g~g~~s~~~~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~n-g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~ 702 (977)
|.+. +..+.+.+.+.+++.||.++++...+++++.|+|++|. ..+ +.+.+|+|+|+..+.. +...... +++.
T Consensus 221 G~~~-s~~~~~~~~~~v~p~pP~~l~v~~~~~~~l~l~W~~P~--~~~~~~~l~Yev~y~~~~~~-w~~~~~~---~~~~ 293 (380)
T 3lb6_C 221 KPIR-SSYFTFQLQNIVKPLPPVYLTFTRESSCEIKLKWSIPL--GPIPARCFDYEIEIREDDTT-LVTATVE---NETY 293 (380)
T ss_dssp --CC-CEEEEECGGGSCCCCCCEEEEEC-------CEEEECCS--SSCCSTTEEEEECC---------CCEES---SSCC
T ss_pred eeec-cccEEEcHHHcccCCCCceEEEEEcCCCeEEEEECCCC--CCCCcceEEEEEEEEeCCCC-ceEeccc---ceEE
Confidence 7764 34467888887767799999998777889999999994 333 5789999999985322 2222221 3567
Q ss_pred ecC-CCCCceEEEEEEEEcC-----CC-cCCCCCceEEeecCC
Q psy574 703 LTN-LSAGIRYSVSLAATNR-----AG-TGPYSRPALLSLTSG 738 (977)
Q Consensus 703 l~~-L~p~t~Y~~~V~A~~~-----~G-~g~~S~~~~~~t~~~ 738 (977)
|.+ |+|++.|.|+|||... .| .|.||+++.+.|.+.
T Consensus 294 l~~~L~p~t~Y~~qVRa~~~~~~~~~g~WSeWS~~~~~~t~~~ 336 (380)
T 3lb6_C 294 TLKTTNETRQLCFVVRSKVNIYCSDDGIWSEWSDKQCWEGEDL 336 (380)
T ss_dssp ------------CCEEEEECTTTCSSCCCCCCCCC--------
T ss_pred EeCccCCCcEEEEEEEEEEcccCCCCCCCCCCCCCEEEeCCCC
Confidence 888 9999999999999954 23 377899999888653
No 81
>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III domain, oncofetal splice VARI extra-domain B, EIIIB, ED-B, angiogenesis, integrin; 2.40A {Homo sapiens} PDB: 4gh7_B
Probab=99.95 E-value=1e-25 Score=254.25 Aligned_cols=268 Identities=19% Similarity=0.286 Sum_probs=212.9
Q ss_pred CCCCCCCCeEEeeCCC-ceEEEEEcCCCCCCcccceEEEEEeecCCCCCCCCCCCCcccEEEeceecCcCeEEEEccCCC
Q psy574 397 YPGPPTKPTLVNQTAN-GLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVG 475 (977)
Q Consensus 397 ~p~~P~~~~v~~~~~~-sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~i~~L~p~ 475 (977)
++.+|.++.+...+.+ ++.|+|.++.. +.+.+|.|+|+...... ..+..........++.+.+|.|+
T Consensus 2 P~~~P~~l~~~~~~~~~sv~l~W~~~~~---~~~~~Y~v~~~~~~~~~---------~~~~~~~~~~~~~~~~i~~L~p~ 69 (375)
T 3t1w_A 2 PLSPPTNLHLEANPDTGVLTVSWERSTT---PDITGYRITTTPTNGQQ---------GNSLEEVVHADQSSCTFDNLSPG 69 (375)
T ss_dssp CCCCCEEEEEEEETTTTEEEEEEECCSC---SSCCEEEEEEEETTCTT---------SCCEEEEEETTCCEEEECCCCTT
T ss_pred CCCCCCccEEEecCCCeEEEEEEeCCCC---CCeeeEEEEEEECCCCC---------CcceeEEcCCCccEEEEcCCcCC
Confidence 4789999999999999 99999999865 46899999998865432 12333334567789999999999
Q ss_pred CeEEEEEEEEcCCCCCCCCCCCceEEeeccccccccccCCcceeecCCCCCCCcchHHHHhhcccccCCceEEEEEeeEe
Q psy574 476 LTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPM 555 (977)
Q Consensus 476 t~Y~~~V~a~n~~G~s~~S~~s~~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~g~~~~~~~~~l~~~~~~~~~~l~~~~~ 555 (977)
+.|.|+|+|.|..|.+.++. ..+....| + +.++++...
T Consensus 70 t~Y~~~V~a~~~~g~s~~~~----~~~~~~~p--------------~------------------------p~~l~~~~~ 107 (375)
T 3t1w_A 70 LEYNVSVYTVKDDKESVPIS----DTIIPEVP--------------Q------------------------LTDLSFVDI 107 (375)
T ss_dssp CCEEEEEEEEETTEECCCEE----EEECCCCC--------------C------------------------CSCCEEECC
T ss_pred CEEEEEEEEEcCCCCCCcEE----eeEcCCCC--------------C------------------------CceEEEEec
Confidence 99999999999887665431 22211111 1 245788889
Q ss_pred CCCeEEEEEEecCCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeecceeCCCCCceEEe
Q psy574 556 TSTSVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVR 635 (977)
Q Consensus 556 ~~tsv~lsW~~p~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~g~~s~~~~~~ 635 (977)
+.++|.|+|+++.++.+.+|.|+|+..+....+..... .....++.|.+|.|++.|.|+|+|.|..|.|.++. ..+.
T Consensus 108 ~~~si~l~W~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~--~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~s~-~~~~ 184 (375)
T 3t1w_A 108 TDSSIGLRWTPLNSSTIIGYRITVVAAGEGIPIFEDFV--DSSVGYYTVTGLEPGIDYDISVITLINGGESAPTT-LTQQ 184 (375)
T ss_dssp CSSEEEEECCCCCCTTEEEEEEEEEESSSCCSCEEEEE--CTTCCEEEEECCCTTCEEEEEEEEEETTEECCCEE-EEEE
T ss_pred CCCeEEEEEECCCCCCceEEEEEEEECCCCCceeEEEc--CCCcceEEEeCCCCCCEEEEEEEEEeCCcccCCee-eeee
Confidence 99999999999977889999999998775433333332 35778999999999999999999999999998777 4555
Q ss_pred ccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecC-CcceEEEEecCCcCeEEecCCCCCceEEE
Q psy574 636 TLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGN-NSALINMTVSASTPTLLLTNLSAGIRYSV 714 (977)
Q Consensus 636 T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~-~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~ 714 (977)
| .|+ +|.++.+...+.+++.|+|++|+ ++.+.+|.|+|+..+ ........+.++.++++|.+|+|++.|.|
T Consensus 185 t---~~~-~p~~l~~~~~~~~si~l~W~~p~----~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~ 256 (375)
T 3t1w_A 185 T---AVP-PPTDLRFTNIGPDTMRVTWAPPP----SIDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVV 256 (375)
T ss_dssp C---CCC-CCEEEEEESCCSSCEEEEEECCS----SCCCCEEEEEEEEGGGTTCCEEEEECTTCCEEEECSCCTTCEEEE
T ss_pred c---CCC-CCceeEEEecccCEEEEEEcCCC----CCCccEEEEEEEeCCCCCCcEEEEcCCCcCEEEeCCCCCCCEEEE
Confidence 5 333 77899998888999999999983 477999999999865 45556667777889999999999999999
Q ss_pred EEEEEcCCCcCCCCC
Q psy574 715 SLAATNRAGTGPYSR 729 (977)
Q Consensus 715 ~V~A~~~~G~g~~S~ 729 (977)
+|+|.|..|.|.++.
T Consensus 257 ~V~A~~~~g~s~~~~ 271 (375)
T 3t1w_A 257 SVSSVYEQHESTPLR 271 (375)
T ss_dssp EEEEEETTEECCCEE
T ss_pred EEEEEcCCCcCCcee
Confidence 999999999987664
No 82
>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A
Probab=99.95 E-value=1.5e-25 Score=252.31 Aligned_cols=267 Identities=19% Similarity=0.261 Sum_probs=210.5
Q ss_pred CCCCCCCCeEEeeCCC-ceEEEEEcCCCCCCcccceEEEEEeecCCCCCCCCCCCCcccEEEeceecCcCeEEEEccCCC
Q psy574 397 YPGPPTKPTLVNQTAN-GLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVG 475 (977)
Q Consensus 397 ~p~~P~~~~v~~~~~~-sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~i~~L~p~ 475 (977)
+|.+|.++.+...+.+ ++.|+|.++.. +.+.+|.|+++...... ...|... ......++++.+|.|+
T Consensus 1 Pp~~P~~l~~~~~~~~~sv~l~W~~~~~---~~i~~Y~v~~~~~~~~~--------~~~~~~~-~~~~~~~~~i~~L~p~ 68 (368)
T 1fnf_A 1 PLSPPTNLHLEANPDTGVLTVSWERSTT---PDITGYRITTTPTNGQQ--------GNSLEEV-VHADQSSCTFDNLSPG 68 (368)
T ss_dssp CCCCCEEEEEEECSSSSCEEEEEECCSC---SSCCEEEEEEEETTTCS--------SCCEEEE-ECTTCCEEECCCCCTT
T ss_pred CCCCCcceEEEecCCCcEEEEEEeCCCC---CCceEEEEEEEECCCCC--------CceeEEE-ecCCcCEEEECCCCCC
Confidence 4789999999988876 59999999863 56899999998765431 0134433 3456788999999999
Q ss_pred CeEEEEEEEEcCCCCCCCCCCCceEEeeccccccccccCCcceeecCCCCCCCcchHHHHhhcccccCCceEEEEEeeEe
Q psy574 476 LTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPM 555 (977)
Q Consensus 476 t~Y~~~V~a~n~~G~s~~S~~s~~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~g~~~~~~~~~l~~~~~~~~~~l~~~~~ 555 (977)
+.|.|+|+|.|..|.+.++. ..+.... .++.++++...
T Consensus 69 t~Y~~~V~a~~~~g~s~~~~----~~~~~~~--------------------------------------~~p~~l~~~~~ 106 (368)
T 1fnf_A 69 LEYNVSVYTVKDDKESVPIS----DTIIPAV--------------------------------------PPPTDLRFTNI 106 (368)
T ss_dssp SCEEEEEEEEETTEECCCEE----EEECCCC--------------------------------------CCCEEEEEESC
T ss_pred CEEEEEEEEEcCCCccCcee----eeecCCC--------------------------------------cCCceeEEEEc
Confidence 99999999999988775431 1221111 12367899999
Q ss_pred CCCeEEEEEEecCCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeecceeCCCCCceEEe
Q psy574 556 TSTSVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVR 635 (977)
Q Consensus 556 ~~tsv~lsW~~p~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~g~~s~~~~~~ 635 (977)
+.++|.|+|++|.++.+.+|.|+|+..+....|....+ .....++.|.+|.|++.|.|+|+|.|..|.+.+.. ....
T Consensus 107 ~~~si~l~W~~p~~~~~~~Y~v~~~~~~~~~~~~~~~~--~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~s~~~~-~~~~ 183 (368)
T 1fnf_A 107 GPDTMRVTWAPPPSIDLTNFLVRYSPVKNEEDVAELSI--SPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLR-GRQK 183 (368)
T ss_dssp CSSCEEEEEECCTTCCCSEEEEEEEETTCTTCCEEEEE--CTTCCEEEECSCCTTCEEEEEEEEEETTEECCCEE-EEEE
T ss_pred CCCeEEEEeeCCCCCCCcEEEEEEEECCCCCccEEEEc--CCCcceEEecCCCCCCEEEEEEEEEeCCCCCCCeE-eeec
Confidence 99999999999977889999999998876556665544 35778999999999999999999999999875532 2222
Q ss_pred ccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecC-CcceEEEEecCCcCeEEecCCCCCceEEE
Q psy574 636 TLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGN-NSALINMTVSASTPTLLLTNLSAGIRYSV 714 (977)
Q Consensus 636 T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~-~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~ 714 (977)
+ +..+|.++++...+.+++.|+|++|. |.+.+|.|+|+..+ ........+....++++|.+|+|++.|.|
T Consensus 184 ~----~~~~P~~l~~~~~~~~sv~l~W~~p~-----~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~ 254 (368)
T 1fnf_A 184 T----GLDSPTGIDFSDITANSFTVHWIAPR-----ATITGYRIRHHPEHFSGRPREDRVPHSRNSITLTNLTPGTEYVV 254 (368)
T ss_dssp C----CCCCCEEEEEESCCSSEEEEEEECCS-----SCCSEEEEEEECSCCSSCCEEEEEETTCCEEEEESCCTTCEEEE
T ss_pred C----CCCCCCccEEEEccCCEEEEEEeCCC-----CCcCEEEEEEecCCCCCCccEEEeCCCcCEEEECCCCCCCEEEE
Confidence 2 23477899998888999999999972 67999999998865 33445566777889999999999999999
Q ss_pred EEEEEcCCCcCCCCC
Q psy574 715 SLAATNRAGTGPYSR 729 (977)
Q Consensus 715 ~V~A~~~~G~g~~S~ 729 (977)
+|+|+|..|.|+++.
T Consensus 255 ~V~A~n~~g~~~~~~ 269 (368)
T 1fnf_A 255 SIVALNGREESPLLI 269 (368)
T ss_dssp EEEEEETTEECCCEE
T ss_pred EEEEEeCCccCCccc
Confidence 999999999988764
No 83
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*
Probab=99.95 E-value=1.2e-26 Score=248.34 Aligned_cols=239 Identities=16% Similarity=0.235 Sum_probs=188.4
Q ss_pred eEEeCCCcEEEEEECCCCCCCC--eEEEEeCCEEeecCCCceEEEecCcEEEEcCC---CCCCCeE--EEEEEEecCcee
Q psy574 15 QRVAAGDTALLECGPPRGHPEP--TLVWKKNGHPIDFENSKRLRLVDGTNLAIQDS---RKTDDGR--YQCVVKNVAGTR 87 (977)
Q Consensus 15 ~~v~~G~~v~L~C~~~~g~P~~--~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v---~~~D~G~--Y~C~a~n~~g~~ 87 (977)
..+.+|+.++|.|.+..+.|.+ .|.|+|||+.+.. ++.. .++.|.|..+ +.+|+|. |+|.+.|..|..
T Consensus 13 ~~v~~G~~v~l~C~~~g~~p~p~~~v~W~k~~~~l~~----~~~~-~~~~~~~~~~~~~~~~d~g~g~Y~C~a~n~~~~~ 87 (265)
T 2oz4_A 13 RVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNP----TVTY-GNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQ 87 (265)
T ss_dssp SEEETTEEEEEEEEEESCSCGGGCEEEEEETTEECCC----EEEE-CSSEEEEEEEEEECGGGCEEEEEEEEEEETTEEE
T ss_pred ceEecCCCEEEEEEccCCCCCcceEEEEEeCCEECCc----eEee-CCCeEEEEeecccccccCCcceEEEEEecCCCCc
Confidence 4789999999999993337876 9999999999842 3333 3456777666 7888884 999999988864
Q ss_pred eeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceEEeccceEEEccCccCCCeEEE
Q psy574 88 ESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYV 167 (977)
Q Consensus 88 ~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~D~G~Y~ 167 (977)
+..+.|.|...|.....+.+..+.+|+.+.|.|.+. |.+.|.| ++..+.... ..+.|.|..+..+|.|.|+
T Consensus 88 -~~~~~l~V~~~p~p~~~~~~~~v~~G~~v~l~C~~~--p~~~i~W--~g~~~~~~~----~~~~l~i~~~~~~~~g~Y~ 158 (265)
T 2oz4_A 88 -ETLQTVTIYSFPAPNVILTKPEVSEGTEVTVKCEAH--PRAKVTL--NGVPAQPLG----PRAQLLLKATPEDNGRSFS 158 (265)
T ss_dssp -EEEEEEEEECCCCCEEEESCSEEETTCEEEEEEECC--TTSEEEE--SSCSSSCCS----SEECCEEECCGGGTTEEEE
T ss_pred -EEEEEEEEeCCCCceeecCCceecCCCcEEEEEEcc--CCCEEEE--CCEEccCCC----CcEEEEEccccccCCceEE
Confidence 467888998644322234566788999999999998 8899999 777774332 3356889999999999999
Q ss_pred EEEEeCC-eeEE---EEEEEEEeeCCeEEec--CCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCccccEE
Q psy574 168 CEAENAV-GKIS---ASATLTVQMAPIVRER--PSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQ 241 (977)
Q Consensus 168 C~a~n~~-g~~~---~~~~L~V~~~p~~~~~--p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~ 241 (977)
|.|.|.. |... ..+.|.|..+|.+... |.+..+.+|+.++|.|.+.|.|.+.+.|++++..+. .
T Consensus 159 C~a~n~~~g~~~~~s~~~~l~V~~~p~~~~~~~p~~~~v~~g~~~~l~C~~~g~P~p~i~W~~~~~~~~-----~----- 228 (265)
T 2oz4_A 159 CSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPL-----P----- 228 (265)
T ss_dssp EEEEEECSSSEEEEEEEEEEEEEEEEECCGGGSCSEEEEETTCEECCCCCCEEESCCEEEEEETTTEEC-----C-----
T ss_pred EEEEcCCCCCcccccccEEEEEEeCCccccccCCCccEEcCCCeEEEEeECccCCCCeEEEEECCcccC-----C-----
Confidence 9998644 5544 7788999988887654 456789999999999999999999999999997321 0
Q ss_pred EEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEEC
Q psy574 242 AEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSG 287 (977)
Q Consensus 242 ~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~ 287 (977)
.| .+ ..++.+|+|.|+ |.|.|..|.....+.|.|..
T Consensus 229 -----~g--~~--~~v~~~d~G~Y~-C~a~N~~G~~~~~~~l~V~~ 264 (265)
T 2oz4_A 229 -----IG--ES--VTVTRDLEGTYL-CRARSTQGEVTREVTVNVLS 264 (265)
T ss_dssp -----TT--SC--EECCGGGCEEEE-EEEEETTEEEEEEEEEEEEC
T ss_pred -----CC--cE--EEeehhhCeEEE-EEEECCCCcEEEEEEEEEec
Confidence 13 22 247889999999 99999999999999999875
No 84
>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R
Probab=99.95 E-value=1.6e-25 Score=245.87 Aligned_cols=266 Identities=19% Similarity=0.262 Sum_probs=205.8
Q ss_pred EEeCCCceEEeCCCeEEEEEEecccCce-----EEEEEECCeeCC--------------CCceEEe--------ccceEE
Q psy574 102 IIRGPKDTTVSASSIIVFECSVGGDAVL-----TVHWKRLGSAMP--------------EDRMSVL--------PSRSLQ 154 (977)
Q Consensus 102 ~~~~p~~~~v~~G~~v~l~C~v~g~p~~-----~i~W~k~~~~l~--------------~~~~~~~--------~~~~L~ 154 (977)
++..|.++.+..|++++|.|.+.+.+.+ .+.|+|++.... ..++.+. .+.+|.
T Consensus 3 vv~~P~~v~~~~G~~v~L~C~v~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~ 82 (313)
T 4fqp_A 3 VVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLR 82 (313)
T ss_dssp EEECCSEECCBTTSCEEECCEEECCTTSCCCCCEEEEEETTSSSCSEEEETTTEEEESSTTTEEESSCCTTSCCCBCCEE
T ss_pred EEcCCCEEEEecCCCEEEEEEEECCCCCccceEEEEEEECCCCcceEEEecCCCceeccCcceEEEeeccCCcccceEEE
Confidence 4556778888999999999999776654 599999975421 1233332 235799
Q ss_pred EccCccCCCeEEEEEEE-eCCeeEEEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEEe-cCCCCeEEEEEcCeeeeec
Q psy574 155 LSDVRLEDAGEYVCEAE-NAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIE-GSPPPSTFWMLEGNRSLIY 232 (977)
Q Consensus 155 I~~v~~~D~G~Y~C~a~-n~~g~~~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~-g~p~~~i~W~~~g~~~~~~ 232 (977)
|.+++.+|+|.|+|.+. +..+..+..+.|.|..+|.+...+....+..++.+.+.|.+. +.|.+.+.|++++..+...
T Consensus 83 I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~l~v~~~P~~~~~~~~~~~~~~~~~~~~C~~~~~~P~~~i~W~~~~~~~~~~ 162 (313)
T 4fqp_A 83 MFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNT 162 (313)
T ss_dssp ECSCCGGGCEEEEEEEECSSSCEEEEEEEECCBBCCEEEEEECCBCCCSSCEEEEEEEEEEEBSCCEEEEEETTCCEEEE
T ss_pred ECcCChhhCEEEEEEEeeccCcceeeeeeeeeccCCcceecccceEeecCceEEEEEEccCccCCcEEEeecCCcccccc
Confidence 99999999999999986 455677888999999999988888888888999999999874 7899999999998765321
Q ss_pred C---CCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEE--EEEEEECCCCCCCCeEE-eCCCceeec
Q psy574 233 P---GDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLAR--ASLTVSGPDPNPPPVIL-FGPANQTLP 306 (977)
Q Consensus 233 ~---~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~--~~l~V~~~~~~~pp~i~-~~p~~~~v~ 306 (977)
. ....+.+.+. +.|.|..+..+|.|.|+ |.|.|..+..... +.|.|.. +|.+. ..+....+.
T Consensus 163 ~~~~~~~~~~~~~~------s~l~i~~~~~~d~g~Y~-C~a~n~~~~~~~~~~~~l~V~~-----~P~v~~~~~~~~~~~ 230 (313)
T 4fqp_A 163 SQVPGFLSGTVTVT------SLWILVPSSQVDGKNVT-CKVEHESFEKPQLLTVNLTVYY-----PPEVSISGYDNNWYL 230 (313)
T ss_dssp EEEECSSTTCEEEE------EEEEECCCGGGTTCEEE-EEEECTTSSSCEEEEEECCBCE-----EEEEEEECCCSCEET
T ss_pred ceeeeecccccccc------eeeeecccccccCeeEE-EEEEccCcCccceeeeeccccc-----CCccccccccceeec
Confidence 1 0111122221 37899999999999999 9999988765444 4455544 56654 445556677
Q ss_pred CCCcEEEEEEEcc--Cc-eEEEEECCEEcCCCCcEEEecCceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEECCC
Q psy574 307 LRSEARLRCQVRG--EG-SVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPT 382 (977)
Q Consensus 307 ~g~~~~L~C~~~~--~p-~i~W~~~g~~l~~~~~~~~~~~~sl~I~~v~~~d~G~Y~C~a~n~~G~~~~s~~l~v~~~~ 382 (977)
.|+.++|.|.+.+ .| .|.|+++|..+.... ....++|.|.++...|+|.|+|.|.|..|..+.++.|.|.++|
T Consensus 231 ~g~~v~l~C~~~g~P~p~~v~W~~~~~~l~~~~---~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~P 306 (313)
T 4fqp_A 231 GQNEATLTCDARSNPEPTGYNWSTTMGPLPPFA---VAQGAQLLIRPVDKPINTTLICNVTNALGARQAELTVQVKEGP 306 (313)
T ss_dssp TCCCEEEEEEEEEESCCCEEEEEETTBSCCTTE---EEETTEEEECCCSSCCEEEEEEEEECSSCEEEEEEEEEEECCC
T ss_pred CCCeEEEEEEecCCCCCcEEEEEECCEECCCce---EEeCCEEEECcCChhhCEEEEEEEEeCCCcEEEEEEEEEEeCC
Confidence 8899999999999 45 599999999875432 3346789999999999999999999999999999999998653
No 85
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}
Probab=99.95 E-value=3.2e-27 Score=256.46 Aligned_cols=269 Identities=18% Similarity=0.202 Sum_probs=204.2
Q ss_pred cccccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEe-cCcEEEEcCCCCCCCeEEEEEEE
Q psy574 3 LLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV-DGTNLAIQDSRKTDDGRYQCVVK 81 (977)
Q Consensus 3 ~l~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~-~~g~L~I~~v~~~D~G~Y~C~a~ 81 (977)
-.+|.|...|.++.+.+|++++|.|.+ .+. |.|++++... .++... ..+.|.|.+++.+|+|.|+|.+.
T Consensus 2 ~~~P~i~~~~~~~~v~~G~~v~L~C~~-~~~----v~W~~~~~~~-----~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 71 (292)
T 4dkd_C 2 GSIPVIEPSVPELVVKPGATVTLRCVG-NGS----VEWDGPPSPH-----WTLYSDGSSSILSTNNATFQNTGTYRCTEP 71 (292)
T ss_dssp --CCEEESCCSSCEECTTCCEEEEEEC-SSC----CCBCCCCCSS-----CEECCBTTEEEEEESSCCGGGCSCEEECCC
T ss_pred CCCceecCCCCeEEEcCCCcEEEEEcC-CCc----eEEccCCCCc-----eEEeccCceEEEEEcccccccCEEEEEEEc
Confidence 356889999999999999999999998 442 9999765321 111111 12489999999999999999999
Q ss_pred ecCceeeeEeEEEEEEcCCe-EEeCCCceEEeCCCeEEEEEEecccCc--eEEEEEEC-CeeCCC-CceEEeccceEEEc
Q psy574 82 NVAGTRESTDAVLRVLVKPY-IIRGPKDTTVSASSIIVFECSVGGDAV--LTVHWKRL-GSAMPE-DRMSVLPSRSLQLS 156 (977)
Q Consensus 82 n~~g~~~s~~~~l~V~~~P~-~~~~p~~~~v~~G~~v~l~C~v~g~p~--~~i~W~k~-~~~l~~-~~~~~~~~~~L~I~ 156 (977)
|..+.. +..+.|.|..+|. +...+.+..+.+|+.+.|.|.+.+ |. +.+.|+++ +..+.. .++....++.|.|.
T Consensus 72 n~~~~~-~~~~~l~V~~~~~~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~L~i~ 149 (292)
T 4dkd_C 72 GDPLGG-SAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTD-PVLEAGVSLVRVRGRPLMRHTNYSFSPWHGFTIH 149 (292)
T ss_dssp C----C-CEEECCEECCSSCCEEESCSEEEEETTSCEECCEEESS-GGGGSSEEEEEGGGCCCCSSCCEECCSSSCCEET
T ss_pred cCCCCc-ceEEEEEEcCccccccccCCeEEEcCCCcEEEeeeCCC-CCcceeEEEEecCCCccccCCcccccCCceEEEC
Confidence 887654 6778889988775 466778889999999999999987 44 78999998 444443 34444566779999
Q ss_pred cCccCCCeEEEEEEEeCCeeE-EEEEEEEEee----CCeEEecCCCcEEeeCCeEEEEEEEecCCC-CeEEEEEcCeeee
Q psy574 157 DVRLEDAGEYVCEAENAVGKI-SASATLTVQM----APIVRERPSDLRLEVGRDAVFLCGIEGSPP-PSTFWMLEGNRSL 230 (977)
Q Consensus 157 ~v~~~D~G~Y~C~a~n~~g~~-~~~~~L~V~~----~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~-~~i~W~~~g~~~~ 230 (977)
+++.+|+|.|+|.|.|..+.. +..+.|.|.. +|.+...+....+.+|+.++|.|.+.+.|. ..+.|++++..+.
T Consensus 150 ~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p~i~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~w~~~~~~~~ 229 (292)
T 4dkd_C 150 RAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLA 229 (292)
T ss_dssp TCCGGGCSEEEEEECSTTSCEECCCEEEEEECCCCSSCEEEEESSCBCCCSSSCEEEEEEEEESSSCCEEECCBSSCCCC
T ss_pred CCCHHHCeEEEEEEEeCCCceeEEEEEEEEeCCCCCCCeEEccCCceeEecCCCEEEEEEecCCCCceEEEEeCCCcccc
Confidence 999999999999999887754 4578899986 899999998888889999999999998765 4688888887553
Q ss_pred ecCCCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEECC
Q psy574 231 IYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGP 288 (977)
Q Consensus 231 ~~~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~~ 288 (977)
... ..++..... ...+.|.|.++..+|+|.|+ |.|.|..|....++.|.|...
T Consensus 230 ~~~---~~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~-C~a~N~~g~~~~~~~l~V~~~ 282 (292)
T 4dkd_C 230 IPQ---QSDFHNNRY-QKVLTLNLDQVDFQHAGNYS-CVASNVQGKHSTSMFFRVVES 282 (292)
T ss_dssp CCB---EEEEETTEE-EEEEEEEESSCCTTSCEEEE-EEEECSSCEEEEEEEECC---
T ss_pred cCc---cceecccee-eeEEEEEECccChhcCeEEE-EEEecCCCCceeEEEEEEeeC
Confidence 211 111110000 01248999999999999999 999999999999999988873
No 86
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}
Probab=99.95 E-value=6.6e-28 Score=268.17 Aligned_cols=275 Identities=20% Similarity=0.251 Sum_probs=219.8
Q ss_pred EEEcCCeEEeCCCceEEeCCCeEEEEEEec-------ccCceEEEEEECCee--CCCC---ceEEeccceEEEccCccCC
Q psy574 95 RVLVKPYIIRGPKDTTVSASSIIVFECSVG-------GDAVLTVHWKRLGSA--MPED---RMSVLPSRSLQLSDVRLED 162 (977)
Q Consensus 95 ~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~-------g~p~~~i~W~k~~~~--l~~~---~~~~~~~~~L~I~~v~~~D 162 (977)
.....|.+...|.+..+.+|+++.|.|.+. +.|.+.|.|+|++.. +... ++. ..+++|.|.+++.+|
T Consensus 14 ~~~~~p~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~-~~~~~L~i~~v~~~D 92 (339)
T 3o4o_C 14 AARSCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMW-AQDGALWLLPALQED 92 (339)
T ss_dssp ----CEEEEECSCCEEEETTBCCEEECTTSCSSCCSTTSSCCBCCCEESSCCSCCSCCSSSCEE-EETTEEEESSBCTTC
T ss_pred cchhhHhhCcCceEEEEECCccEEEEeccccccccccCCCCceEEEEECCCCcccCccccccEE-eeCCeEEECCCCccc
Confidence 344568899999999999999999999997 889999999999987 3332 332 467899999999999
Q ss_pred CeEEEEEEEeCCeeEEEEEEEEEeeCCeEE--ecCCCcEEeeCCeEEEEEE-----EecCCCCeEEEEEcCeeeeecCCC
Q psy574 163 AGEYVCEAENAVGKISASATLTVQMAPIVR--ERPSDLRLEVGRDAVFLCG-----IEGSPPPSTFWMLEGNRSLIYPGD 235 (977)
Q Consensus 163 ~G~Y~C~a~n~~g~~~~~~~L~V~~~p~~~--~~p~~~~v~~G~~v~L~C~-----~~g~p~~~i~W~~~g~~~~~~~~~ 235 (977)
+|.|+|.+.|..|.....+.|.|..++... .......+.+|+.+.|.|. +.+.|.+.+.|++++..+..
T Consensus 93 ~G~Y~C~~~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~g~p~~~v~W~k~g~~~~~---- 168 (339)
T 3o4o_C 93 SGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDK---- 168 (339)
T ss_dssp CEEEECCEEETTEEEEEEEEEEEECSCGGGHHHHCEEEEEETTSCEEEECCSCTTTCCSSSCCCBCCEESSCBCCT----
T ss_pred CEEEEEEEECCcceEEEEEEEEEEcCCCccccccccceEEECCCCEEEEecCCcccccCCCCceEEEecCCeeCCC----
Confidence 999999999999988899999998765432 2223347889999999999 78899999999999987642
Q ss_pred ccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCC----ceeEEEEEEEECCCCCCCCeEEeCCCceeecCCCcE
Q psy574 236 RVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAG----SDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEA 311 (977)
Q Consensus 236 ~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g----~~~~~~~l~V~~~~~~~pp~i~~~p~~~~v~~g~~~ 311 (977)
...++.... +...|.|.+++.+|+|.|+ |.|.|..| .....+.|.|.......+|.+...+....+..|+.+
T Consensus 169 ~~~~~~~~~---~~~~L~i~~v~~~d~G~Y~-C~a~n~~g~~~~~~~~~~~l~V~~~~~~~~P~i~~~~~~~~v~~G~~v 244 (339)
T 3o4o_C 169 DNEKFLSVR---GTTHLLVHDVALEDAGYYR-CVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISASLGSRL 244 (339)
T ss_dssp TCSSEEECT---TSSEEEESSCCGGGCEEEE-EEEECCBTTBCCEEEEEEEEEEECCCCCCCCEECCCSCCCCCCCCSCC
T ss_pred CCceeEEcC---CcceEEEcccCHhhCeEEE-EEEEECCCCeEEEEEEEEEEEEEcCCCCCCCEEecCCceeEeccCCCE
Confidence 223444432 3348999999999999999 99999887 356678888887655567888888888889999999
Q ss_pred EEEEEE---cc---CceEEEEECCEEcCC---------CCcEEEecCc------eEEEeccCCCCC-eEEEEEEEcCCCc
Q psy574 312 RLRCQV---RG---EGSVQWWRGEREVGS---------GPRVNVTGDG------SLVLTDVTKEDS-GEYTCVVKSPHGS 369 (977)
Q Consensus 312 ~L~C~~---~~---~p~i~W~~~g~~l~~---------~~~~~~~~~~------sl~I~~v~~~d~-G~Y~C~a~n~~G~ 369 (977)
.|.|.+ .+ .+.+.|+++|..+.. ..++....++ +|.|.++...|. |.|+|.|.|..|.
T Consensus 245 ~L~C~~~~~~g~P~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~ 324 (339)
T 3o4o_C 245 TIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSF 324 (339)
T ss_dssp CCCCCEEESSSCCSSCEEEEESSSSCSSSSSCSSSCEECCCEECCCSSSCEEEECCEECSSCCCSCCCCCEEEEEETTEE
T ss_pred EEEEEEECCCCCCCCceEEEEECCeecccccccccceecceEEecccCceEEEEEEEEEEechhhcCccEEEEEEeccCc
Confidence 999999 77 457999999986532 2334444455 799999999997 9999999999998
Q ss_pred eEEEEEEEE
Q psy574 370 ASWSASLRF 378 (977)
Q Consensus 370 ~~~s~~l~v 378 (977)
.+..+.+.+
T Consensus 325 ~~~~~~~~~ 333 (339)
T 3o4o_C 325 QTLRTTVKE 333 (339)
T ss_dssp ECCBCCCCC
T ss_pred eEEEEEhhH
Confidence 876665544
No 87
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}
Probab=99.95 E-value=3.6e-26 Score=247.83 Aligned_cols=262 Identities=13% Similarity=0.196 Sum_probs=185.7
Q ss_pred ccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecC----cEEEEcCCCCCCCeEEEEEEE
Q psy574 6 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG----TNLAIQDSRKTDDGRYQCVVK 81 (977)
Q Consensus 6 ~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~----g~L~I~~v~~~D~G~Y~C~a~ 81 (977)
|.|...+.++.+.+|++++|.|.+ .+. |.|+|++..+. .++....+ +.|.|.+++.+|+|.|+|.|.
T Consensus 1 P~i~~~~~~~~v~~G~~v~L~C~~-~~~----v~W~~~~~~~~----~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~ 71 (289)
T 3mjg_X 1 LVVTPPGPELVLNVSSTFVLTCSG-SAP----VVWERMSQEPP----QEMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHN 71 (289)
T ss_dssp CCBCSSCSEEECCTTCCEEEEEEE-SSC----CEEEBTTBCCS----EEEEECTTSCEEEEEEECSCCGGGCEEEEEECC
T ss_pred CeecCCCCeEEEeCCCcEEEEEec-cce----EEEECCCCCcc----cceeccCCCceeEEEEEccCChhhCEEEEEEEc
Confidence 456666777899999999999998 443 99999999882 34444433 479999999999999999999
Q ss_pred ecCceeeeEeEEEEEEc--CCe-EEeCCCc---eEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceEEeccceEEE
Q psy574 82 NVAGTRESTDAVLRVLV--KPY-IIRGPKD---TTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQL 155 (977)
Q Consensus 82 n~~g~~~s~~~~l~V~~--~P~-~~~~p~~---~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~~~~~L~I 155 (977)
|..|........+.|.. +.. +...... ..+.+|+++.|.|.+. .|.+.+.|++++....... .......+.
T Consensus 72 n~~g~~~~~~~~~~v~v~~p~~~~~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~w~~~~~~~~~~~-~~~~~~~~~- 148 (289)
T 3mjg_X 72 DSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVT-DPQLVVTLHEKKGDVALPV-PYDHQRGFS- 148 (289)
T ss_dssp C------CCCEEEEEECCCTTCCBCCCCHHHHEEEESSCCCEEECCCBS-CTTSCEEEEESSCCSCCCC-CEETTTEEE-
T ss_pred ccCCCCcCcEEeEEEEEECCCcCcccCCCCcceEEeecCCeEEEEeEcC-CCCceEEEEeCCCCCccce-eecCCcCee-
Confidence 98875333333444443 222 1111212 6789999999999998 6778899999753332211 111112222
Q ss_pred ccCccCCCeEEEEEEEeCCeeE-EEEEEEEEee--CCeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeec
Q psy574 156 SDVRLEDAGEYVCEAENAVGKI-SASATLTVQM--APIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIY 232 (977)
Q Consensus 156 ~~v~~~D~G~Y~C~a~n~~g~~-~~~~~L~V~~--~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~ 232 (977)
...|+|.|+|.|.|..+.. +..+.|.|.. +|.+...+....+.+|+.++|.|.+.+.|.+.+.|++++.....
T Consensus 149 ---~~~d~G~Y~C~a~n~~~~~~s~~~~l~v~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~~~~~~~- 224 (289)
T 3mjg_X 149 ---GIFEDRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGR- 224 (289)
T ss_dssp ---ECCCSSEEEEEEEETTEEEECCCEEEEECCCCCCCCEEEESCSEEETTSCEEEEEEEESCSSBEEEEECTTSSSSC-
T ss_pred ---eeccCcEEEEEEEeCCceeeeeeEEEEecCCCCCCcEEeCCcceeEcCCCEEEEEEECCCCCcceEEEcCCccCCC-
Confidence 3579999999999877654 3446677764 77777777778899999999999999999999999987754311
Q ss_pred CCCccccEEEEEc---cCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEEC
Q psy574 233 PGDRVDNIQAEIT---SDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSG 287 (977)
Q Consensus 233 ~~~~~~~~~~~~~---~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~ 287 (977)
.......... ....+.|.|.+++.+|+|.|+ |.|.|..|....++.|.|..
T Consensus 225 ---~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~-C~a~N~~G~~~~~~~l~v~~ 278 (289)
T 3mjg_X 225 ---LVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYT-CNVTESVNDHQDEKAINITV 278 (289)
T ss_dssp ---CCCCEEEESCTTTTEEEEEEEESSCCSSCCEEEE-EEEEETTTTEEEEEEEEEEE
T ss_pred ---cccccccccCCcceEEEEEEEEcccChhhCcEEE-EEeecCCCCceeEEEEEEEE
Confidence 0111111100 112359999999999999999 99999999999999999987
No 88
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}
Probab=99.94 E-value=2.6e-26 Score=251.86 Aligned_cols=262 Identities=15% Similarity=0.256 Sum_probs=200.0
Q ss_pred ceEEeCCCeEEEEEEe-cccCceEEEEEECCeeCC-CCceEEecc---ceEEEccCccCCCeEEEEEEEeCCeeEEEEEE
Q psy574 108 DTTVSASSIIVFECSV-GGDAVLTVHWKRLGSAMP-EDRMSVLPS---RSLQLSDVRLEDAGEYVCEAENAVGKISASAT 182 (977)
Q Consensus 108 ~~~v~~G~~v~l~C~v-~g~p~~~i~W~k~~~~l~-~~~~~~~~~---~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~ 182 (977)
...+.+|+.+.|.|.. .+.|.+.|.|+|++..+. ..++.+..+ ..|.|.+++.+|+|.|+|.|.|..|... .+.
T Consensus 10 ~~~v~eg~~v~l~~~~~~~~p~~~v~W~k~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~~~n~~g~~~-s~~ 88 (312)
T 2y23_A 10 VVNVDDDGVISLNFECDKMTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIAS-SYL 88 (312)
T ss_dssp EEEECTTCCEEEEEECSSCCTTCCEEEEETTEECTTCTTEEEEEETTEEEEEESSCCGGGCEEEEEEESSSCCCCE-EEE
T ss_pred eEEEecCCeEEEEEEEeCCCCCcEEEEEECCEECCCCCCEEEEEeCCEEEEEECcCCccCCEEEEEEEEeCCCcEE-EEE
Confidence 4578899999999998 467999999999999987 456655433 5899999999999999999999887543 566
Q ss_pred EEEee------------CCeEEecCC-CcEEeeCCeEEEEEEEe-cCCCCeEEEEEcCeeeeecCCCccccEEEEEc-cC
Q psy574 183 LTVQM------------APIVRERPS-DLRLEVGRDAVFLCGIE-GSPPPSTFWMLEGNRSLIYPGDRVDNIQAEIT-SD 247 (977)
Q Consensus 183 L~V~~------------~p~~~~~p~-~~~v~~G~~v~L~C~~~-g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~-~~ 247 (977)
|.|.. +|.+...+. ...+.+|+.++|.|.+. +.|.+.+.|++++..+. ...++.+... ..
T Consensus 89 l~v~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~i~-----~~~~~~~~~~~~~ 163 (312)
T 2y23_A 89 IDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIF-----EGPKYKMHIDRNT 163 (312)
T ss_dssp ECHHHHHHHHHHHHHHHSCBCCEEEEEEEEECSSSCEEEEEEESCCCSSCEEEEEETTEEEC-----SSSSCEEEEETTT
T ss_pred EEEeeeeeeecccccCCCCccccccCCceEEeeCCCEEEEEEEEeCCCCCEEEEEECCEECe-----eCCcEEEEEccCC
Confidence 77653 666555443 77899999999999998 89999999999998874 2345555443 24
Q ss_pred CceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEECC----------------CCCCCCeEEeCCCceeecCCCcE
Q psy574 248 GMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGP----------------DPNPPPVILFGPANQTLPLRSEA 311 (977)
Q Consensus 248 g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~~----------------~~~~pp~i~~~p~~~~v~~g~~~ 311 (977)
+...|.|.+++.+|+|.|+ |.|.+..... ...+.+... ....+|.+.... ...+..|+.+
T Consensus 164 ~~~~L~i~~~~~~d~G~Y~-C~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~v~~G~~~ 239 (312)
T 2y23_A 164 GIIEMFMEKLQDEDEGTYT-FQLQDGKATN--HSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYL-SWEVTGECNV 239 (312)
T ss_dssp TEEEEEESCCCGGGCEEEE-EEEESSSCEE--EEEEEECTHHHHHHHHHHHHHHHHHHHHHSSEEEEEE-EEEEETTTEE
T ss_pred CEEEEEEccCCcccCEeEE-EEEEeCCceE--EEEEEEcchhhhhhcccccccccchhhccCCceeecc-eEEEeCCCEE
Confidence 5567999999999999999 9998654433 333333110 001135554333 3678899999
Q ss_pred EEEEEEcc--Cc-eEEEEECCEEcCCCCcEEEecC-ceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEE
Q psy574 312 RLRCQVRG--EG-SVQWWRGEREVGSGPRVNVTGD-GSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFE 379 (977)
Q Consensus 312 ~L~C~~~~--~p-~i~W~~~g~~l~~~~~~~~~~~-~sl~I~~v~~~d~G~Y~C~a~n~~G~~~~s~~l~v~ 379 (977)
.|.|.+.+ .+ .+.|+++|..+....++.+... ..|.|.++...|+|.|+|.|.|..|....++.|.++
T Consensus 240 ~l~C~~~~~p~~~~v~W~~~g~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~i~ 311 (312)
T 2y23_A 240 LLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDE 311 (312)
T ss_dssp EEEEEEESCCSSCEEEEEETTEEEEEECCC----CEEEEEECSCSGGGCEEEEEEEESTTCCEEEEEEECSC
T ss_pred EEEEEEcCCCCCCEEEEeeCCEECCCCCcEEEECCEEEEEECcCCHHHCEEEEEEEEcCCCceeeeeEEEec
Confidence 99999999 55 8999999998875555554433 579999999999999999999999999988888653
No 89
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A
Probab=99.94 E-value=1.4e-25 Score=248.31 Aligned_cols=267 Identities=18% Similarity=0.301 Sum_probs=205.6
Q ss_pred CeEEeCCCceEEeCCCeEEEEEEeccc----CceEEEEEECCee---------------C---CCCceEEe----ccceE
Q psy574 100 PYIIRGPKDTTVSASSIIVFECSVGGD----AVLTVHWKRLGSA---------------M---PEDRMSVL----PSRSL 153 (977)
Q Consensus 100 P~~~~~p~~~~v~~G~~v~l~C~v~g~----p~~~i~W~k~~~~---------------l---~~~~~~~~----~~~~L 153 (977)
+.++..|.++.+.+|+++.|.|.+.+. +.+.+.|+|++.. + ..+|+.+. .+.+|
T Consensus 15 ~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L 94 (331)
T 3u83_A 15 SQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRPSFTDGTI 94 (331)
T ss_dssp ------CEEEEEETTCCEEECCBCSSCCSSCEEEEEEEEEEETTEEEEEEEEETTTEEEECTTCTTTEEESSCSSSBCCE
T ss_pred cceEEcCCcEEEEecCCEEEeeecCCCCCCCceEEEEEEEcCCCCCceEEEEeccCCCCcCcccCCceEecccCCCCceE
Confidence 345566778899999999999999776 5678999996411 1 12455543 35789
Q ss_pred EEccCccCCCeEEEEE-EEeCCeeEEEEEEEEEeeCCeEEe--cCCCcEEeeC---CeEEEEEE-EecCCCCeEEEEEcC
Q psy574 154 QLSDVRLEDAGEYVCE-AENAVGKISASATLTVQMAPIVRE--RPSDLRLEVG---RDAVFLCG-IEGSPPPSTFWMLEG 226 (977)
Q Consensus 154 ~I~~v~~~D~G~Y~C~-a~n~~g~~~~~~~L~V~~~p~~~~--~p~~~~v~~G---~~v~L~C~-~~g~p~~~i~W~~~g 226 (977)
.|.+++.+|+|.|+|. +.+..+.....+.|.|..+|.+.. .+....+.+| +.++|.|. +.+.|.+.+.|++++
T Consensus 95 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~g~~~~~~~l~C~~~~~~p~~~i~W~~~~ 174 (331)
T 3u83_A 95 RLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRL 174 (331)
T ss_dssp EECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEEEECSSCEEECTTCCCCEEEEEEEEEEEBSCCEEEEEESS
T ss_pred EEcccCcccCcEEEEEEEecCCCccEEEEEEEEecCCcceeecCCCceeecCCCccceEEEEEEecCCcCCceEEEEcCC
Confidence 9999999999999998 567778888899999999887744 4566678888 88999997 889999999999964
Q ss_pred eeeee--cCCCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEECCCCCCCCeEE-eCCCce
Q psy574 227 NRSLI--YPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVIL-FGPANQ 303 (977)
Q Consensus 227 ~~~~~--~~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~~~~~~pp~i~-~~p~~~ 303 (977)
..... ......+.+.+. +.|.|..+..+|+|.|+ |.|.|..|.....+.|.|.. +|.+. ..+...
T Consensus 175 ~~~~~~~~~~~~~~~~~~~------~~L~i~~~~~~d~G~Y~-C~a~n~~~~~~~~~~l~V~~-----~P~~~~~~~~~~ 242 (331)
T 3u83_A 175 KGEAEYQEIRNPNGTVTVI------SRYRLVPSREAHQQSLA-CIVNYHMDRFKESLTLNVQY-----EPEVTIEGFDGN 242 (331)
T ss_dssp CCEEEEEEEECTTSCEEEE------EEEEECCCGGGTTCEEE-EEEEETTEEEEEEEECCEEE-----EEEEEEECCCSC
T ss_pred CCccccceeECCCCcEEEE------EEEEEEeccccCCCEEE-EEEecCCCcceeeEEEEEec-----CCeEEEecCCCc
Confidence 32211 111112222222 37899999999999999 99999999888888888887 45554 455566
Q ss_pred eecCCCcEEEEEEEcc--Cce-EEEEECCEEcCCCCcEEEecCceEEEe-ccCCCCCeEEEEEEEcCCCceEEEEEEEEE
Q psy574 304 TLPLRSEARLRCQVRG--EGS-VQWWRGEREVGSGPRVNVTGDGSLVLT-DVTKEDSGEYTCVVKSPHGSASWSASLRFE 379 (977)
Q Consensus 304 ~v~~g~~~~L~C~~~~--~p~-i~W~~~g~~l~~~~~~~~~~~~sl~I~-~v~~~d~G~Y~C~a~n~~G~~~~s~~l~v~ 379 (977)
.+..|+.+.|.|.+.+ .|. +.|++++..+.... ...+++|.|. ++...|.|.|+|.|.|..|..+.++.|.|.
T Consensus 243 ~~~~g~~~~l~C~~~g~p~p~~i~W~~~~~~~~~~~---~~~~~~L~i~~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 319 (331)
T 3u83_A 243 WYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGV---EAQNRTLFFKGPINYSLAGTYICEATNPIGTRSGQVEVNIT 319 (331)
T ss_dssp CBTTCCCEEEEEEEEEESCCCEEEEEETTBSCCTTE---EEETTEEEECSCCCGGGCEEEEEEEEETTEEEEEEEEECCB
T ss_pred eEeCCCeEEEEEeCcCCCCCCEEEEEECCCcccccc---eecCcEEEEeCCCccccCeEEEEEEEeccccceEEEEEEEe
Confidence 6889999999999998 566 99999999876542 2356789999 899999999999999999999999999887
Q ss_pred CC
Q psy574 380 SP 381 (977)
Q Consensus 380 ~~ 381 (977)
..
T Consensus 320 ~~ 321 (331)
T 3u83_A 320 EA 321 (331)
T ss_dssp C-
T ss_pred cc
Confidence 54
No 90
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*
Probab=99.94 E-value=4.3e-26 Score=247.17 Aligned_cols=268 Identities=19% Similarity=0.232 Sum_probs=206.4
Q ss_pred cCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceEEeccceEEEccCccCCCeEEEEEEEeCCeeE
Q psy574 98 VKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKI 177 (977)
Q Consensus 98 ~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~ 177 (977)
.+|.+...+....+.+|++++|.|.+.+ .+.|++++....... .......|.|.+++.+|+|.|+|.+.|..+..
T Consensus 3 p~p~i~~~~~~~~v~~G~~v~L~C~~~~----~v~W~~~~~~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~ 77 (289)
T 3ejj_X 3 PAPVIEPSGPELVVEPGETVTLRCVSNG----SVEWDGPISPYWTLD-PESPGSTLTTRNATFKNTGTYRCTELEDPMAG 77 (289)
T ss_dssp -CCEEESCSSEEEECTTCCEEEEEECSS----CCEEECSCSSSSEEC-CCSSCCEEEESSCCGGGCEEEEEECCC-----
T ss_pred CCcEecCCCceEEECCCCCEEEEEEeCC----cEEEccCCCceEEEe-ccCCccEEEEeeeccccCEEEEEEEeccCCcc
Confidence 3566777778889999999999999976 499998865432100 01145789999999999999999999988888
Q ss_pred EEEEEEEEeeCCe-EEecCCCcEEeeCCeEEEEEEEecCCCCe-EEEEEcCeeeeecCCCccccEEEEEccCCceEEEEe
Q psy574 178 SASATLTVQMAPI-VRERPSDLRLEVGRDAVFLCGIEGSPPPS-TFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQ 255 (977)
Q Consensus 178 ~~~~~L~V~~~p~-~~~~p~~~~v~~G~~v~L~C~~~g~p~~~-i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~s~L~I~ 255 (977)
+..+.|.|..+|. +...+....+.+|+.+.|.|.+.+.+.+. +.|++.+.... ....++.+.. .+ .|.|.
T Consensus 78 ~~~~~l~V~~~~~~~~~~~~~~~v~~g~~v~L~C~~~~~~~~~~v~W~~~~~~~~----~~~~~~~~~~--~~--~L~i~ 149 (289)
T 3ejj_X 78 STTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQV----LRKTVYFFSP--WR--GFIIR 149 (289)
T ss_dssp CEEEEEEECCSSCSEEESCSEEEEETTSCEEECEEESCGGGGGSEEEEEGGGEEC----CTTCCEEEET--TT--EEEES
T ss_pred eeEEEEEEeCCCcceecccceEEEecCCceEeEEEccCCCcceEEEEEecCCeec----CCCccEEECC--CC--CEEEe
Confidence 8899999998776 56677778999999999999999877765 99987544332 1234444432 24 89999
Q ss_pred ecccCCCCeEEEEEEE-cCCCceeEEEEEEEECCCCCCCCeEEeCCCceeecCCCcEEEEEEEcc---CceEEEEECCEE
Q psy574 256 NVSRTAAPLIILCLGV-NAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG---EGSVQWWRGERE 331 (977)
Q Consensus 256 ~v~~~d~G~Y~~C~a~-n~~g~~~~~~~l~V~~~~~~~pp~i~~~p~~~~v~~g~~~~L~C~~~~---~p~i~W~~~g~~ 331 (977)
+++.+|+|.|+ |.|. +..+.....+.|.|.... ..+|.+...+....+..|+.+.|.|.+.+ .+.+.|++++..
T Consensus 150 ~v~~~d~G~Y~-C~a~~~~~~~~~~~~~l~V~~~~-~~~p~i~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~ 227 (289)
T 3ejj_X 150 KAKVLDSNTYV-CKTMVNGRESTSTGIWLKVNRVH-PEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTK 227 (289)
T ss_dssp SCCGGGCEEEE-EEEEETTEEEECCCEEEEEESSC-CCCCEEEEESSSEECCSSSCEEEEEEEEESSSCCEEEEEETTEE
T ss_pred ecccccCEEEE-EEEEeCCCccccccEEEEEEECC-CCCCeEEecCCceEEEeCCcEEEEEEeCCCCCceEEEEEECCEE
Confidence 99999999999 9999 555555667788887521 23778888888888889999999999987 568999999998
Q ss_pred cCCCCcEEE-----ecCceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEEC
Q psy574 332 VGSGPRVNV-----TGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFES 380 (977)
Q Consensus 332 l~~~~~~~~-----~~~~sl~I~~v~~~d~G~Y~C~a~n~~G~~~~s~~l~v~~ 380 (977)
+........ ...+.|.|.++...|.|.|+|.|.|..|....++.|.+..
T Consensus 228 ~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~s~~L~~~~ 281 (289)
T 3ejj_X 228 LEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVE 281 (289)
T ss_dssp CCCCEEEEECSSSEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEEECC-
T ss_pred eeccCCcccccceEEeeEEEEEEeecccCCEEEEEEEEcCCCCccccEEEEEEe
Confidence 865422221 2245799999999999999999999999999999998764
No 91
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}
Probab=99.94 E-value=2e-26 Score=255.09 Aligned_cols=258 Identities=15% Similarity=0.198 Sum_probs=197.9
Q ss_pred CceEEeCCCeEEEEEEeccc---------CceEEEEEECCeeCCC-CceEEeccceEEEccCccCCCe-EEEEEEEeCCe
Q psy574 107 KDTTVSASSIIVFECSVGGD---------AVLTVHWKRLGSAMPE-DRMSVLPSRSLQLSDVRLEDAG-EYVCEAENAVG 175 (977)
Q Consensus 107 ~~~~v~~G~~v~l~C~v~g~---------p~~~i~W~k~~~~l~~-~~~~~~~~~~L~I~~v~~~D~G-~Y~C~a~n~~g 175 (977)
.+..+.+|+++.|.|.+.+. |.+.|.|+|++..+.. .+. ..+++|.|.+++.+|+| .|+|.|.|..|
T Consensus 37 ~~v~v~eG~~v~L~C~~~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~--~~~~~L~i~~v~~~D~Gs~Y~C~a~n~~g 114 (329)
T 3oq3_B 37 MNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRR--VKNGDLWIANYTSNDSHRRYLCTVTTKNG 114 (329)
T ss_dssp EEEEECTTSCEEECCHHHHCTTTGGGSCCTTCEEEEEECSSSCEECSTT--EETTEEEESSCCGGGGGCCEEEEEECTTS
T ss_pred ceEEEECCCeEEEEccCCCCccccccccCCCCeeEEEECCCCccccCce--eecceEEEcCCChHhCCCcEEEEEEeCCC
Confidence 45578999999999999774 6689999999987653 222 45789999999999999 99999999887
Q ss_pred eEEEEEE-EEEeeCCeEEecCCCcEEeeCCeEEEEEEEecCC-CCeEEEEEcCeeeeecCCCccccEEEEEccCCceEEE
Q psy574 176 KISASAT-LTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSP-PPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLK 253 (977)
Q Consensus 176 ~~~~~~~-L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p-~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~s~L~ 253 (977)
....... +.+..+|.+...+....+.+|+.+.|.|.+.+.| .+.+.|+|++..+.. ...++... .+ .|.
T Consensus 115 ~~~~~~~~~v~~~~p~~~~~~~~~~~~~G~~v~L~C~~~g~p~~~~i~W~k~~~~l~~----~~~~~~~~---~~--~L~ 185 (329)
T 3oq3_B 115 DCVQGIVRSHIRKPPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELII----DGTKYSQS---GQ--NLI 185 (329)
T ss_dssp CEEEEEEEEEECCCCSCEEEEEETTSSTTTCEEEECCCCSCCCCCEEEEEETTEECCC----SSSSEEEE---TT--EEE
T ss_pred ceeeEEEEEEEcCCCcEeccccceEEeCCCcEEEEeccCCCCCCceEEEEECCccCCC----CCceEecC---CC--EEE
Confidence 6444433 3334555544444444567899999999999999 899999999987632 23344443 24 999
Q ss_pred EeecccCCCCeEEEEEEEcC--CCceeEE----EEEEEECCCCCCCCeEEeCCCceeecCCCcEEEEEEEcc-C----c-
Q psy574 254 IQNVSRTAAPLIILCLGVNA--AGSDLAR----ASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG-E----G- 321 (977)
Q Consensus 254 I~~v~~~d~G~Y~~C~a~n~--~g~~~~~----~~l~V~~~~~~~pp~i~~~p~~~~v~~g~~~~L~C~~~~-~----p- 321 (977)
|.+++.+|+|.|+ |.|.|. .|..... +.|.|...+....|.+ .|....+..|+.+.|.|.+.+ + +
T Consensus 186 I~~v~~~D~G~Y~-C~a~n~~~~g~~~~~~s~~~~l~V~~~~~~~~~~~--~~~~~~v~~G~~~~l~C~~~g~p~~~~~i 262 (329)
T 3oq3_B 186 IHNPELEDSGRYD-CYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLI--LDPKINVTIGEPANITCTAVSTSLLVDDV 262 (329)
T ss_dssp ECSCCGGGCEEEE-EEEEECCTTSSSCEEEEEEEEEEEECCCCCCEEEE--CCSEEEECTTSCEEEEEEEEETTCCTTCC
T ss_pred EeecChhhCEEEE-EEEEecccCCCceeEEEeeEEEEEECCCCCCCcee--cCCeeEEecCCCEEEEEEEEECCCCCCCc
Confidence 9999999999999 999987 6554333 6788877422212333 677788999999999999999 3 3
Q ss_pred eEEEEECCEEc-CCCCcEEEe-------cCceEEEeccCCCCCe-EEEEEEEcCCCceEEEEEEEE
Q psy574 322 SVQWWRGEREV-GSGPRVNVT-------GDGSLVLTDVTKEDSG-EYTCVVKSPHGSASWSASLRF 378 (977)
Q Consensus 322 ~i~W~~~g~~l-~~~~~~~~~-------~~~sl~I~~v~~~d~G-~Y~C~a~n~~G~~~~s~~l~v 378 (977)
.+.|+++|..+ ....+.... ..+.|.|.++...|.| .|+|.|.|..|....++.|.|
T Consensus 263 ~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~~Y~C~a~N~~G~~~~~~~l~v 328 (329)
T 3oq3_B 263 LIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVVL 328 (329)
T ss_dssp EEEEECTTSCBCCBCSSEEEEEEEETTEEEEEEEESSCCGGGTTCEEEEEEECSSCEEEEEEEEEE
T ss_pred EEEEEECCeeeeccCCceeeeecccCceeEeEEEEEeccHHHCCCcEEEEEEecCCceEEEEEEEe
Confidence 78999999874 333333222 3457999999999999 999999999999988888876
No 92
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Probab=99.94 E-value=1.6e-25 Score=238.76 Aligned_cols=240 Identities=18% Similarity=0.238 Sum_probs=197.5
Q ss_pred CCeEEeCCCceEEeCCCeEEEEEEecccCce-EEEEEECCeeCCCCceEEeccceEEEccCccCCCeEEEEEEEeCCeeE
Q psy574 99 KPYIIRGPKDTTVSASSIIVFECSVGGDAVL-TVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKI 177 (977)
Q Consensus 99 ~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~-~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~ 177 (977)
+|.+...|.+..+.+|+.+.|.|.+.+.|.+ .+.|+|++..+.. .+..|.|.+++.+|+|.|+|.+.|..+.
T Consensus 1 kP~i~~~p~~~~v~~G~~v~l~C~~~~~~~~~~~~W~~~g~~~~~------~~~~l~i~~~~~~d~G~Y~C~~~~~~~s- 73 (262)
T 3rjd_A 1 KAVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQT------STPSYRITSASVNDSGEYRCQRGLSGRS- 73 (262)
T ss_dssp CCEEEESSCCSEEETTCCEEEEEECSSCCCTTCEEEEETTEECSC------CSSEEEESSCCGGGCEEEEEEESSSCCC-
T ss_pred CCeEecCCCcEEeeCCCeEEEEEECCCCCCCceEEEEECCEEeec------cCCeEEEecCCcccCeEEEEEEecCCcc-
Confidence 4788888999999999999999999888887 9999999998865 3578999999999999999999886543
Q ss_pred EEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEE-ecCCCCeEEEEEcCeeeeecCCCccccEEEEEccCCceEEEEee
Q psy574 178 SASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGI-EGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQN 256 (977)
Q Consensus 178 ~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~-~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~s~L~I~~ 256 (977)
..+.|.|..++. ...+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+... . ....|.|.+
T Consensus 74 -~~~~l~v~~~~~-~~~~~~~~~~~g~~v~l~C~~~~~~p~~~v~W~~~g~~~~~~-----------~---~~~~l~i~~ 137 (262)
T 3rjd_A 74 -DPIQLEIHRGWL-LLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFF-----------H---WNSNLTILK 137 (262)
T ss_dssp -CCEEEEEECSSE-EEEESCSEEETTSCEEEEEEEGGGCCCEEEEEEETTEEEEEE-----------E---ECCCEEESS
T ss_pred -ccEEEEEeccce-EecCCCeEEecCCeEEEEEEccCCCCCceEEEEECCcccccc-----------C---CCCeEEEEE
Confidence 466777876654 445567788999999999999 77888899999999876321 1 123899999
Q ss_pred cccCCCCeEEEEEEEcCCCceeEEEEEEEECCCCCCCCeEEeCCCceeecCCCcEEEEEEEcc-C--c----eEEEEECC
Q psy574 257 VSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG-E--G----SVQWWRGE 329 (977)
Q Consensus 257 v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~~~~~~pp~i~~~p~~~~v~~g~~~~L~C~~~~-~--p----~i~W~~~g 329 (977)
++.+|+|.|+ |.|.|..+.....+.|.|... ..+|.+...+ ...+..|+.+.|.|.+.+ + + .+.|++++
T Consensus 138 ~~~~d~G~Y~-C~~~n~~~~~~~~~~l~V~~~--~~~p~~~~~~-~~~~~~g~~~~l~C~~~~~p~~p~~~~~~~w~~~~ 213 (262)
T 3rjd_A 138 TNISHNGTYH-CSGMGKHRYTSAGISVTVKEL--FPAPVLNASV-TSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGS 213 (262)
T ss_dssp CCGGGCEEEE-EEEESSSEEEEECEEEEEECS--SCCCEEEESS-CSSEETTCCEEEEEECCCCCC-----EEEEEEETT
T ss_pred CChhhCEEEE-EEEeCCCCccccceEEEeccC--CCCCeEeecC-ceeecCCCeEEEEeEcccCCCCCCccEEEEEEeCC
Confidence 9999999999 999999987778888888863 2256666665 667889999999999998 2 3 37899999
Q ss_pred EEcCCCCcEEEecCceEEEeccCCCCCeEEEEEEEcCCCce
Q psy574 330 REVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSA 370 (977)
Q Consensus 330 ~~l~~~~~~~~~~~~sl~I~~v~~~d~G~Y~C~a~n~~G~~ 370 (977)
..+.. ....+.|.|.++...|+|.|+|.|.|..|..
T Consensus 214 ~~~~~-----~~~~~~L~i~~v~~~d~G~Y~C~a~n~~G~~ 249 (262)
T 3rjd_A 214 KTLRG-----RNTSSEYQILTARREDSGLYWCEAATEDGNV 249 (262)
T ss_dssp EEEEE-----EESCCEEEESSCCGGGCEEEEEEEEETTSSC
T ss_pred cEecc-----cCCCceEEEEEechhhCeEEEEEEEcccCce
Confidence 87642 1345679999999999999999999999975
No 93
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D
Probab=99.94 E-value=1.2e-26 Score=255.37 Aligned_cols=266 Identities=14% Similarity=0.177 Sum_probs=186.0
Q ss_pred ccccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEec
Q psy574 4 LREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNV 83 (977)
Q Consensus 4 l~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~ 83 (977)
-+|.|...|. ..+.+|++++|.|.+ .+. .+.+.|+|||..+... ......++.|.|.+++.+|+|.|+|.|.|.
T Consensus 23 ~~P~i~~~p~-~~v~~G~~v~L~C~~-~~~-~~~~~W~k~g~~~~~~---~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~ 96 (316)
T 3vh8_G 23 DKPFLSAWPS-AVVPRGGHVTLRCHY-RHR-FNNFMLYKEDRIHIPI---FHGRIFQESFNMSPVTTAHAGNYTCRGSHP 96 (316)
T ss_dssp -CCEEEEESC-SEEETTSCEEEEEEB-TTB-CCSEEEEESSCSSSCH---HHHCCBSSCEEECSCCGGGCEEEEEEEBCS
T ss_pred CCCEeeccCC-CccCCCCCEEEEEEc-cCC-CceEEEEeCCCcccee---ecCCcceEEEEECCCCcccCeEEEEEEEcC
Confidence 3678888887 678999999999999 455 6789999999886321 111123678999999999999999999864
Q ss_pred Cc----eeeeEeEEEEEEc---CCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceE--E---eccc
Q psy574 84 AG----TRESTDAVLRVLV---KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMS--V---LPSR 151 (977)
Q Consensus 84 ~g----~~~s~~~~l~V~~---~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~--~---~~~~ 151 (977)
.+ ...+..+.|.|.. +|.+...|... +.+|++++|.|.+.+ +.+.+.|+|++..+...... . ....
T Consensus 97 ~~~~~~~~~s~~~~l~V~~~~~~p~~~~~~~~~-v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~ 174 (316)
T 3vh8_G 97 HSPTGWSAPSNPVVIMVTGNHRKPSLLAHPGPL-VKSGERVILQCWSDI-MFEHFFLHKEGISKDPSRLVGQIHDGVSKA 174 (316)
T ss_dssp SSSSSBCCCCCCEEEEEECSSCCCEEEEESCSE-EETTCCEEEEEEESS-CCSEEEEEETTCCSCCEEEECEEETTEEEE
T ss_pred CCCcceecCCCcEEEEEecCCCCCeEEecCCCc-cCCCCeEEEEEcCCC-CCcEEEEEECCCccccceeeeeecCCCceE
Confidence 32 2345667788864 45666666554 889999999999954 55689999999877542211 1 1346
Q ss_pred eEEEccCccCCCeEEEEEEEeCCee-----EEEEEEEEEe---eCCeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEE
Q psy574 152 SLQLSDVRLEDAGEYVCEAENAVGK-----ISASATLTVQ---MAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWM 223 (977)
Q Consensus 152 ~L~I~~v~~~D~G~Y~C~a~n~~g~-----~~~~~~L~V~---~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~ 223 (977)
.|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|. .+|.+...+.. .+.+|+.++|.|.+. .+.+.+.|+
T Consensus 175 ~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~~~~~p~i~~~~~~-~v~~G~~v~L~C~~~-~~~~~~~W~ 252 (316)
T 3vh8_G 175 NFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQPGP-KVQAGESVTLSCSSR-SSYDMYHLS 252 (316)
T ss_dssp EEEECSCCGGGCEEEEEEEECTTCTTBCCCCCCCEEEEEECSSCCCEEEEESCS-CCCTTSCCEEEEEES-SCCSEEEEE
T ss_pred EEEECCCChhhCceEEEEEecCCCCccccCCCCCEEEEecCCCCCCeEEeCCCC-eecCCCcEEEEEECC-CCCcEEEEE
Confidence 8999999999999999999998763 2556677776 35666666543 678999999999997 477899999
Q ss_pred EcCeeeeecCCCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCc-----eeEEEEEEEEC
Q psy574 224 LEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGS-----DLARASLTVSG 287 (977)
Q Consensus 224 ~~g~~~~~~~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~-----~~~~~~l~V~~ 287 (977)
|+|..+... ..............|.|.+++ |+|.|+ |.|.|..+. .+....|.|.+
T Consensus 253 k~g~~~~~~-----~~~~~~~~~~~~~~L~i~~v~--D~G~Y~-C~a~n~~~~~~~s~~S~~~~l~V~g 313 (316)
T 3vh8_G 253 REGGAHERR-----LPAVRKVNRTFQADFPLGPAT--HGGTYR-CFGSFRHSPYEWSDPSDPLLVSVTG 313 (316)
T ss_dssp ETTSSCCEE-----EECEECTTSCEEEEEECC-------CEEE-EEEEBTTBTTEECCCCCCEEC----
T ss_pred ECCCcCCCc-----eeceeccCCceeEEEEcCCcC--CCEEEE-EEeecCCCchhccCCCCcEEEEEeC
Confidence 999765321 000000010112489999999 999999 999997764 23445566554
No 94
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone receptor/immune system complex; 3.80A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1 PDB: 3loh_E
Probab=99.94 E-value=1.5e-27 Score=297.37 Aligned_cols=303 Identities=17% Similarity=0.224 Sum_probs=223.5
Q ss_pred CCCCCCCCCeEEeeCCCceEEEEEcCCCCCCcccceEEEEEeecCCCCCC---CCCCCCcccEEEeceec----------
Q psy574 396 TYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSS---PSGDTATATWVRVATNV---------- 462 (977)
Q Consensus 396 ~~p~~P~~~~v~~~~~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~~---~~~~~~~~~w~~~~~~~---------- 462 (977)
.....|.++.+..++.+++.|+|.+|...+++.+.+|.|+|+........ -....+...|.......
T Consensus 467 ~C~~~~~~l~v~~~s~~sv~LsW~~p~~~~~~~i~gY~V~y~~~~~~n~t~~~~~~~c~~~~w~~~~~~~~~~~~~~~~~ 546 (897)
T 2dtg_E 467 SCENELLKFSYIRTSFDKILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQ 546 (897)
T ss_dssp CCSCCBCCCSEEEECSSCEEEECCCCCSSSCCCEEEECCCSSSCCTTTCCCCCCCCCSCCCCCCCCCSCCEEEECCCCSS
T ss_pred ccccceeEEEEEEEecCeEEEEecCCCCCCCceeeeEEEEEEeCCCCCcccccCccccCCCcceEEecCCCccccccccc
Confidence 45567889999999999999999999865667899999999765311000 00001223676544221
Q ss_pred CcCeEEEEccCCCCeEEEEEEE-EcCCCC----CCCCCCCceEEeeccccccccccCCcceeecCCCCCCCcchHHHHhh
Q psy574 463 PSPILTVTNLTVGLTYTFLVRA-LNSHGL----SAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQ 537 (977)
Q Consensus 463 ~~~~~~i~~L~p~t~Y~~~V~a-~n~~G~----s~~S~~s~~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~g~~~~~~~~ 537 (977)
...++++.+|+|++.|.|+|+| .|..|. +.+|.... +++ ++.+
T Consensus 547 ~~~~~~l~~L~P~T~Y~~~V~A~~n~~G~~~~~~~~S~~v~-~~T----~~~~--------------------------- 594 (897)
T 2dtg_E 547 NHPGWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIY-VQT----DATN--------------------------- 594 (897)
T ss_dssp SCCEEEECSCCSSCBCCBEEEECCCCCSSCCCCCCBCCCBC-CBC----CCCC---------------------------
T ss_pred cccceEeCCCCCCcEEEEEEEEEEeccCCccccCCccceEE-EEC----CCCC---------------------------
Confidence 2578999999999999999999 999987 44443322 222 1111
Q ss_pred cccccCCceEEEEEeeEeCCCeEEEEEEec--CCCccceEEEEEEecCCCC-----------------------------
Q psy574 538 HLQEGGGSLIELTEVKPMTSTSVKLTWEIL--NTDYIEGVYIYSRGLDPPA----------------------------- 586 (977)
Q Consensus 538 ~l~~~~~~~~~~l~~~~~~~tsv~lsW~~p--~~~~i~~Y~v~y~~~~~~~----------------------------- 586 (977)
|.+|.++++...++++|.|+|++| .++.|.+|+|+|+....+.
T Consensus 595 ------Ps~P~~l~~~~~s~tsI~LsW~pP~~~nG~I~~Y~V~~~~~~~~~~~~~~~~~~~~~l~p~t~Y~~~V~A~~~~ 668 (897)
T 2dtg_E 595 ------PSVPLDPISVSNSSSQIILKWKPPSDPNGNITHYLVFWERQAEDSELFELDYCLKGLKLPSRTWSPPFESEDSQ 668 (897)
T ss_dssp ------CCCCEEEEEEECSSSCEEEEEECCCCSSSSCSEEECCEEEECCCCSCTTCSSSCSCCCCCC-------------
T ss_pred ------CcCCcceEEEeCCCCEEEEEEeCCCCCCCCeeEEEEEEEECCCCccceecccccCCCcCCccccceeeeccccc
Confidence 223478999999999999999999 6788999999998754310
Q ss_pred -----------------------------------CceEE-----EE-------------------------eecCccce
Q psy574 587 -----------------------------------SVAML-----TV-------------------------LHAGEASG 601 (977)
Q Consensus 587 -----------------------------------~~~~~-----~~-------------------------~~~~~~~~ 601 (977)
.|... .. ......++
T Consensus 669 ~~s~~~~~~~~~~~~~~p~~p~~~~~~~~~~s~~~~W~~~~~n~v~~~~p~~~r~~l~~~~n~t~~~~~~~~~~~~~~t~ 748 (897)
T 2dtg_E 669 KHNQSEYEDSAGECCSCPKTDSQILKELEESSFRKTFEDYLHNVVFVPRPSRKRRSLGDVGNAGNNEEHRPFEKVVNKES 748 (897)
T ss_dssp -------------------------------------------------------------------CCSCSCEECSCSE
T ss_pred CcccccccccCCCccCCcCcccchhhhhhhhheeeeEEEccCceEEccCCCcccccccccccccCccccceEEecCCceE
Confidence 11100 00 01124578
Q ss_pred EEECCCCCCcEEEEEEEEeecceeCCC---CCceEEeccCC-CCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEE
Q psy574 602 FLVTGLAHYSRYEFFLVPFFGSVDGKP---SNLRAVRTLEC-EPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTY 677 (977)
Q Consensus 602 ~~i~~L~p~t~Y~~~V~a~n~~g~g~~---s~~~~~~T~~~-~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y 677 (977)
++|.+|+|++.|.|+|+|+|..|.+.. +..+.++|.+. .|+.+|.++++...+.++|.|+|++| ...||.|.+|
T Consensus 749 ~~i~gL~p~t~Y~~~V~A~n~~G~g~~~s~s~~v~~~T~~~~~~p~~P~~l~~~~~~~~sv~LsW~~P--~~~nG~I~~Y 826 (897)
T 2dtg_E 749 LVISGLRHFTGYRIELQACNQDTPEERCSVAAYVSARTMPEAKADDIVGPVTHEIFENNVVHLMWQEP--KEPNGLIVLY 826 (897)
T ss_dssp EEECSSCSSCEEEECCEEESCSSSSCCBCCCCCEEEECCCCCCCCCCCCCCCCCSSSSSCCCCCCCCC--CSCSSCEEEE
T ss_pred EEECCCCCCcEEEEEEEEEeCCCCCCCCCCCceeEEeccCccCCCCCCcceEEEeCCCCEEEEEECCC--CCCCCCEEEE
Confidence 999999999999999999999998764 56788888863 33457889988888889999999999 6789999999
Q ss_pred EEEEEecCCcceEE-E--EecCCcCeEEecCCCCCceEEEEEEEEcCCCcCCCCCceEEeecCCC
Q psy574 678 QIIVGGGNNSALIN-M--TVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGP 739 (977)
Q Consensus 678 ~v~~~~~~~~~~~~-~--~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~~G~g~~S~~~~~~t~~~~ 739 (977)
+|+|+..+...... . ......++++|.+|+|+ +|.|+|+|+|.+|.|++|+++.|+|.+..
T Consensus 827 ~V~y~~~~~~~~~~~~~~~~~~~~~~~~l~~L~pg-tY~~rV~A~n~~G~G~~S~~v~~~T~~~p 890 (897)
T 2dtg_E 827 EVSYRRYGDEELHLCDTRKHFALERGCRLRGLSPG-NYSVRIRATSLAGNGSWTEPTYFYVTDYL 890 (897)
T ss_dssp CCCCBSSSBCCCCCCCCSSSCCCTTCCCCCSCCSS-EECCCCCEEETTBCCCCCCCCEECCCCCC
T ss_pred EEEEEECCCcceEEEEeeeeecccCcEEECCCCCC-cEEEEEEEEeCCcccCCCCCEEEEeCCCC
Confidence 99998854321111 1 11346788999999999 69999999999999999999999998765
No 95
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E
Probab=99.94 E-value=7e-26 Score=254.40 Aligned_cols=266 Identities=14% Similarity=0.157 Sum_probs=205.0
Q ss_pred eEEeCCCeEEEEEEecccCceEEEEEECCeeCC---------------CCceEEe------ccceEEEccCccCCCeEEE
Q psy574 109 TTVSASSIIVFECSVGGDAVLTVHWKRLGSAMP---------------EDRMSVL------PSRSLQLSDVRLEDAGEYV 167 (977)
Q Consensus 109 ~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~---------------~~~~~~~------~~~~L~I~~v~~~D~G~Y~ 167 (977)
+.+.+|+++.|.|.+.+.|.+.|.|+|++..+. ..|+.+. .+.+|.|.+++.+|+|.|+
T Consensus 4 v~~~~G~~v~L~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~ 83 (363)
T 1wio_A 4 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYI 83 (363)
T ss_dssp EEEETTSCEEECCCCTTCSSCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCHHHHHTTCCCEEECSCCGGGCEEEE
T ss_pred EEEeCCCeEEEEEEecCCCceEEEEEeCCccceeccCccEEecCCcccccceeeeeccccCCeEEEEECCCCHHHCEEEE
Confidence 467899999999999999999999999985321 1233332 2557999999999999999
Q ss_pred EEEEeCCeeEEEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCccccEEEEEccC
Q psy574 168 CEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSD 247 (977)
Q Consensus 168 C~a~n~~g~~~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~ 247 (977)
|.|.|.. ..+.|.|.. +...| ...+.+|+.++|.|.+.+.|.+.+.|++++..+..
T Consensus 84 C~~~n~~----~~~~l~V~~---~~~~~-~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~---------------- 139 (363)
T 1wio_A 84 CEVEDQK----EEVQLLVFG---LTANS-DTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQ---------------- 139 (363)
T ss_dssp EEETTEE----EEEEEEEEE---EEESS-CSSEESBSCEEEEEECCTTCCCCEEEECSSSCEEE----------------
T ss_pred EEEEECC----CcEEEEEEe---CCCCC-ceEEecCCCEEEEEEcCCCCCCeEEEEcCCCcccc----------------
Confidence 9998864 356677764 33333 34788999999999999999999999999865420
Q ss_pred CceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEECCCCCCCCeEEeCCCceeecCCCcEEEEEEEcc-------C
Q psy574 248 GMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG-------E 320 (977)
Q Consensus 248 g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~~~~~~pp~i~~~p~~~~v~~g~~~~L~C~~~~-------~ 320 (977)
+...|.|.+++.+|+|.|+ |.|.|..+.....+.|.|... |.. +....+..|+.+.|.|.+.+ .
T Consensus 140 ~~~~L~i~~v~~~d~G~Y~-C~a~~~~~~~~~~~~l~v~~~-----p~~---~~~~~~~~G~~v~l~C~~~~~~~~~~P~ 210 (363)
T 1wio_A 140 GGKTLSVSQLELQDSGTWT-CTVLQNQKKVEFKIDIVVLAF-----QKA---SSIVYKKEGEQVEFSFPLAFTVEKLTGS 210 (363)
T ss_dssp ESSEEEECSBCGGGCEECE-EEEEETTEEEEECCEECEECC-----SCS---EEEEEEETBCCEEEECCCCCCCCSSCEE
T ss_pred cceEEEEeeCChhcCCEEE-EEEecCCCeEEEEEEEEEecC-----CCC---CCceEEecCCEEEEEEEEecccccCCCc
Confidence 2239999999999999999 999998777777777777752 221 24566888999999998876 4
Q ss_pred ceEEEEECCEEcCC--------CCcEEEe-----------c--CceEEEeccCCCCCeEEEEEEEcC--CCceEEEEEEE
Q psy574 321 GSVQWWRGEREVGS--------GPRVNVT-----------G--DGSLVLTDVTKEDSGEYTCVVKSP--HGSASWSASLR 377 (977)
Q Consensus 321 p~i~W~~~g~~l~~--------~~~~~~~-----------~--~~sl~I~~v~~~d~G~Y~C~a~n~--~G~~~~s~~l~ 377 (977)
|.+.|+++|..+.. ..++.+. . ..+|.|.++...|+|.|+|.|.|. .|.....+.|.
T Consensus 211 p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~g~~~~~~~l~ 290 (363)
T 1wio_A 211 GELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLV 290 (363)
T ss_dssp EEEEEEESSCCCCCCEEEEEECSSCEEEEEEECSSCCBCCSSSSCEEEESSBCGGGCEEEEEEECBTTTTCCEEEEEEEE
T ss_pred eeEEEecCCCCccceEEEEEecCCeeeccccccchhhhcccCCceEEEEccCCcCcCcEEEEEEEEhhhcCeEEEEEeEE
Confidence 68999999988765 4455442 2 338999999999999999999999 99988888898
Q ss_pred EECCCCCCCcccCCCCCCCCCCCCCCCeEEeeCCC--ceEEEEEcCCC
Q psy574 378 FESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTAN--GLTLAWSRNNQ 423 (977)
Q Consensus 378 v~~~~~~~~~~~~~~~~~~~p~~P~~~~v~~~~~~--sv~lsW~~p~~ 423 (977)
|.. .++.+..+.|...... .+.+.|..+..
T Consensus 291 V~~----------------v~g~~~~l~C~~~g~p~p~~~i~W~~~~~ 322 (363)
T 1wio_A 291 VMR----------------ATQLQKNLTCEVWGPTSPKLMLSLKLENK 322 (363)
T ss_dssp EEE----------------ECCCSSSEEEEEESSCCTTCCEEEECSSS
T ss_pred EEE----------------ecCCCeeEEEEEccccCCCccEEEEeCCC
Confidence 872 2355666666655443 34588887654
No 96
>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine, ligand-receptor complex, signaling protein-cytokin; HET: NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1
Probab=99.94 E-value=2.7e-25 Score=243.95 Aligned_cols=281 Identities=15% Similarity=0.137 Sum_probs=197.0
Q ss_pred CCceeecCCCcEEEEEEEccC-------ceEEEEECCEEcCCCCcEEEecC----ceEEEeccCCCCCeEEEEEEEcCCC
Q psy574 300 PANQTLPLRSEARLRCQVRGE-------GSVQWWRGEREVGSGPRVNVTGD----GSLVLTDVTKEDSGEYTCVVKSPHG 368 (977)
Q Consensus 300 p~~~~v~~g~~~~L~C~~~~~-------p~i~W~~~g~~l~~~~~~~~~~~----~sl~I~~v~~~d~G~Y~C~a~n~~G 368 (977)
|.+..+..|++++|.|.+.+. +.|.|++||..+... +.....+ +.|+|.++...|+|.|+|.+.+..+
T Consensus 7 p~~~~v~~G~~v~l~C~~~~~~~~~~~~~~i~W~~~g~~l~~~-~~~~~~~~~~~~~L~i~~~~~~d~g~y~c~~~~~~~ 85 (313)
T 2d9q_B 7 VSAPIVHLGDPITASCIIKQNCSHLDPEPQILWRLGAELQPGG-RQQRLSDGTQESIITLPHLNHTQAFLSCSLNWGNSL 85 (313)
T ss_dssp ESCSEECTTCCEEEEECCCTTSCSSCSCSCCEEESSSCBCTTC-EECCCSSSCCCEEEEESCCCSSEEEEEEEEESSSSE
T ss_pred CCCcEEcCCCCEEEEEEECCCCCCCCcccceEEEeCCEECCcc-ceEEEecCeEEEEEEEeccCCCccceEEeeecCCCc
Confidence 346778999999999999983 679999999977543 2211122 4699999999999999999976555
Q ss_pred ceEEEEEEEEECCCCCCCcccCCCCCCCCCCCCCCCeEEeeC-CCceEEEEEcCCCCCCcccceEEEEEeecCCCCCCCC
Q psy574 369 SASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQT-ANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPS 447 (977)
Q Consensus 369 ~~~~s~~l~v~~~~~~~~~~~~~~~~~~~p~~P~~~~v~~~~-~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~ 447 (977)
.....+.|.+. .+|++|.++.+.... .++++|+|.++.+ ++. ...|.|+|+..... |.
T Consensus 86 ~~~~~~~l~v~----------------~~P~~P~~l~c~~~~~~~~~~~~W~~~~~-~~~-~~~Y~l~~~~~~~~---~~ 144 (313)
T 2d9q_B 86 QILDQVELRAG----------------YPPAIPHNLSCLMNLTTSSLICQWEPGPE-THL-PTSFTLKSFKSRGN---CQ 144 (313)
T ss_dssp EEEEEEEEEEC----------------CCCCCCEEEEEEEETTTTEEEEEEECCSC-CSS-CCEEEEEEEECCTT---SC
T ss_pred eeEEEEEEccC----------------CCCCCCccceeeECCCCccEEEEecCCCC-CCC-ceeEEEEEEecCCC---cc
Confidence 44455666664 458899999888774 6899999999887 333 56799999865422 11
Q ss_pred CCCCcccEEEeceecCcCeEEEE--ccCCCCeEEEEEEEEcCCCCCCCCCCCceEEeeccccccccccCCcceeecCCCC
Q psy574 448 GDTATATWVRVATNVPSPILTVT--NLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPD 525 (977)
Q Consensus 448 ~~~~~~~w~~~~~~~~~~~~~i~--~L~p~t~Y~~~V~a~n~~G~s~~S~~s~~~~~~~~~p~~~p~~~~~~~~~~~P~~ 525 (977)
.....|..+.......++.+. +|.+++.|.|+|.|.|..|.+.++. +.. .......|. |
T Consensus 145 --~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~Y~f~V~A~N~~G~~~s~~----~~~-~~~~~~~p~---------p--- 205 (313)
T 2d9q_B 145 --TQGDSILDCVPKDGQSHCSIPRKHLLLYQNMGIWVQAENALGTSMSPQ----LCL-DPMDVVKLE---------P--- 205 (313)
T ss_dssp --SCCCCEEEECCCTTCSEEEEEGGGCCSSSCEEEEEEEEETTEEEECCC----EEE-CGGGGEECC---------C---
T ss_pred --cCCcccccCCCCCCCcEEEECccccccceeEEEEEEEECCCCCccCcc----EEE-ehhheeccC---------c---
Confidence 011256555432333456665 5999999999999999999864322 112 111111122 2
Q ss_pred CCCcchHHHHhhcccccCCceEEEEEeeEe------CCCeEEEEEEec-C-CCccceEEEEEEecCCCCCceEEEEeecC
Q psy574 526 EGRGESLRRARQHLQEGGGSLIELTEVKPM------TSTSVKLTWEIL-N-TDYIEGVYIYSRGLDPPASVAMLTVLHAG 597 (977)
Q Consensus 526 ~~~g~~~~~~~~~l~~~~~~~~~~l~~~~~------~~tsv~lsW~~p-~-~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~ 597 (977)
|.++++... .+++|.|+|++| . +..+.+|+|+|+.......|....... .
T Consensus 206 ---------------------P~~~~~~~~~~~~~~~~~~l~l~W~~p~~~~~~~l~Y~v~y~~~~~~~~w~~~~~~~-~ 263 (313)
T 2d9q_B 206 ---------------------PMLRTMDPSPEAAPPQAGCLQLSWEPWQPGLHINQKCELRHKPQRGEASWALVGPLP-L 263 (313)
T ss_dssp ---------------------CEEEECCC-------CCSCEEEEEECCGGGTTSCEEEEEEEEESSSCCCCEEEEEEC-S
T ss_pred ---------------------CceeEEEEecccccCCCCeEEEEECCCCCCCceeEEEEEEEccCCCCCCcEEccccc-C
Confidence 266777765 578999999998 3 344579999999433357888765433 4
Q ss_pred ccceEEECCCCCCcEEEEEEEEeecceeCC---CCCceEEeccCCCCCC
Q psy574 598 EASGFLVTGLAHYSRYEFFLVPFFGSVDGK---PSNLRAVRTLECEPSG 643 (977)
Q Consensus 598 ~~~~~~i~~L~p~t~Y~~~V~a~n~~g~g~---~s~~~~~~T~~~~P~~ 643 (977)
..+.+.|.+|+|++.|.|+|+|.|..|.|. +|..+.++|.+++|++
T Consensus 264 ~~~~~~l~~L~p~t~Y~~rVra~~~~g~G~wS~wS~~~~~~T~~~~P~~ 312 (313)
T 2d9q_B 264 EALQYELCGLLPATAYTLQIRCIRWPLPGHWSDWSPSLELRTTERAAAP 312 (313)
T ss_dssp CEEEEEECSCCSCCCEEEEEEEEECSSCCCCCCCCCCEEECCCC-----
T ss_pred cceEEEEeCCCCCCeEEEEEEeeECCCCCccCCCCCccceeCCccCCCC
Confidence 567899999999999999999999987775 6678899999988863
No 97
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*
Probab=99.94 E-value=2.6e-26 Score=256.40 Aligned_cols=264 Identities=18% Similarity=0.209 Sum_probs=172.3
Q ss_pred CCceEEeCCCeEEEEEEecccCc-----------eEEEEEECCee------CC---CCceEEeccceEEEccCccCCCeE
Q psy574 106 PKDTTVSASSIIVFECSVGGDAV-----------LTVHWKRLGSA------MP---EDRMSVLPSRSLQLSDVRLEDAGE 165 (977)
Q Consensus 106 p~~~~v~~G~~v~l~C~v~g~p~-----------~~i~W~k~~~~------l~---~~~~~~~~~~~L~I~~v~~~D~G~ 165 (977)
..++.+.+|+++.|.|.+.+.|. +.|.|+|++.. +. ........++.|.|.+++.+|+|.
T Consensus 14 ~~~v~v~~G~~v~L~C~~~~~p~~~~ys~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~ 93 (349)
T 4dep_C 14 MRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLNDTGN 93 (349)
T ss_dssp CCCCEEETTSCEEEECTCCCCCSSSCHHHHHHTTCEEEEEEEESSCCCEEECCCCCGGGCEEEETTEEEESSCCGGGCEE
T ss_pred eeeEEEecCCeEEEEccccccccccccccccCCCceEEEEECCCCCcccccccccccCceEeecCCEEEEccCChhhCEE
Confidence 46678999999999999987554 89999999842 21 111122356789999999999999
Q ss_pred EEEEEEeCCeeEEEEEEEEEeeCCeEEe----cCCCcEEeeCCeEEEEEEE-----ecCCCCeEEEEEcCeeeeecCCCc
Q psy574 166 YVCEAENAVGKISASATLTVQMAPIVRE----RPSDLRLEVGRDAVFLCGI-----EGSPPPSTFWMLEGNRSLIYPGDR 236 (977)
Q Consensus 166 Y~C~a~n~~g~~~~~~~L~V~~~p~~~~----~p~~~~v~~G~~v~L~C~~-----~g~p~~~i~W~~~g~~~~~~~~~~ 236 (977)
|+|.|.|..+.....+.|.|..++.+.. .+....+.+|+.+.|.|.+ .+.|.+.+.|+|++..+. .
T Consensus 94 Y~C~a~n~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~g~p~~~v~W~k~~~~l~-----~ 168 (349)
T 4dep_C 94 YTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQ-----N 168 (349)
T ss_dssp EEEEEECSSCEEEEEEEEEEECCCTTSCCSCCCCEEEEETTCSEEEEECCSCTTSSCTTSCCEEEEEETTEECC-----S
T ss_pred EEEEEecCCceEEEEEEEEEecCCcccCcccccCcceeeecCccEEEEcCCCcccccCCCCceEEEeeCCEECC-----C
Confidence 9999999999888899999987654322 2335578899999999985 778999999999998762 1
Q ss_pred cccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCC-Cce---eEEEEEEEECCCC-CCCCeEEeCCCce--eecCCC
Q psy574 237 VDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAA-GSD---LARASLTVSGPDP-NPPPVILFGPANQ--TLPLRS 309 (977)
Q Consensus 237 ~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~-g~~---~~~~~l~V~~~~~-~~pp~i~~~p~~~--~v~~g~ 309 (977)
..++... + ..|.|.+++.+|+|.|+ |.|.|.. |.. .....|.|..... ..+|.+..++... .+..|+
T Consensus 169 ~~~~~~~----~-~~L~i~~v~~~d~G~Y~-C~a~n~~~g~~~~~~~~~~l~v~~~~~~~~~p~i~~~~~~~~~~v~~G~ 242 (349)
T 4dep_C 169 FNNVIPE----G-MNLSFLIALISNNGNYT-CVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGE 242 (349)
T ss_dssp CSSEEEE----T-TEEEEESCCGGGCEEEE-EEEEEEETTEEEEEEEEEEEEEECCGGGCCSCEEC--------------
T ss_pred ccceeec----C-CEEEEeeeeecCCcEEE-EEEEEeeCCEEEEEEEEEEEEEEccCCCCCCCeEecCCCceeEEEecCC
Confidence 1233222 1 38999999999999999 9999987 443 4555666665321 1256666555443 788999
Q ss_pred cEEEEEEEc----c--CceEEEEECCEEcCC-CCcEEEe------------cCceEEEeccCCCCC-eEEEEEEEcCCCc
Q psy574 310 EARLRCQVR----G--EGSVQWWRGEREVGS-GPRVNVT------------GDGSLVLTDVTKEDS-GEYTCVVKSPHGS 369 (977)
Q Consensus 310 ~~~L~C~~~----~--~p~i~W~~~g~~l~~-~~~~~~~------------~~~sl~I~~v~~~d~-G~Y~C~a~n~~G~ 369 (977)
.+.|.|.+. + .|.+.|+++|..+.. ..++.+. ...+|.|.++...|. |.|+|.|.|..|.
T Consensus 243 ~v~l~C~~~~~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~ 322 (349)
T 4dep_C 243 ELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGE 322 (349)
T ss_dssp --CCCEEEEECCCTTCCCEEEEESSCC--------CCCCEEEECCTTCCEEEEECC-------------CEEEEECSSCE
T ss_pred cEEEEEEEEEccCCCCCCEEEEEECCEEccccCCccccccceeeecCCCcEEEEEEEEeeccHHHcCCcEEEEEEcCCCc
Confidence 999999999 4 578999999988765 2222211 123499999999999 9999999999999
Q ss_pred eEEEEEEEEEC
Q psy574 370 ASWSASLRFES 380 (977)
Q Consensus 370 ~~~s~~l~v~~ 380 (977)
...++.|.|..
T Consensus 323 ~~~~~~l~v~~ 333 (349)
T 4dep_C 323 VAKAAKVKQKV 333 (349)
T ss_dssp EEEECC-----
T ss_pred EEEEEEEeeec
Confidence 99988888864
No 98
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R
Probab=99.94 E-value=1.6e-26 Score=254.08 Aligned_cols=262 Identities=19% Similarity=0.260 Sum_probs=203.4
Q ss_pred CceEEeCCCeEEEEEEecccC-ceEEEEEECCeeCC-----CCceEEeccceEEEccCccCCCeEEEEEEEeCCeeEEEE
Q psy574 107 KDTTVSASSIIVFECSVGGDA-VLTVHWKRLGSAMP-----EDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISAS 180 (977)
Q Consensus 107 ~~~~v~~G~~v~l~C~v~g~p-~~~i~W~k~~~~l~-----~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~ 180 (977)
....+.+|+++.|.|.+.+.| .+.|.|+|++..+. ..++.. .++.|.|.+++.+|+|.|+|.|.|..|.....
T Consensus 13 ~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~-~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~ 91 (315)
T 1itb_B 13 IILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQ-HKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIK 91 (315)
T ss_dssp CCCEEETTSCCCCBCCCCSCCCSSCCCEECTTSCSCSCCCTTSSSEE-CSSBEECTTCCGGGCSCCEECCCSSSCCCCEE
T ss_pred eEEEEcCCCcEEEEeeccCcCCCceEEEEeCCCcCccccccCCcEec-cCCeEEECCCChhhCEEEEEEEeCCceEEEEE
Confidence 356889999999999998877 78999999986542 234433 45699999999999999999999998877666
Q ss_pred EEEEEe-eCCeEEecCC---CcEEeeCCeEEEEEEE------ecCCCCeEEEEEcCeeeeecCCCccccEEEEEccCCce
Q psy574 181 ATLTVQ-MAPIVRERPS---DLRLEVGRDAVFLCGI------EGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMN 250 (977)
Q Consensus 181 ~~L~V~-~~p~~~~~p~---~~~v~~G~~v~L~C~~------~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~s 250 (977)
+.+.|. .+|.+...+. ...+..|+.+.|.|.+ .+.|.+.+.|++++..+.. ...++... .+
T Consensus 92 ~~v~v~~~~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~g~p~~~i~W~k~~~~l~~----~~~~~~~~---~~-- 162 (315)
T 1itb_B 92 ISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLL----DNIHFSGV---KD-- 162 (315)
T ss_dssp CCCEEECCCTTSSSCGGGEEEEEEETTSCEEEECSSCTTTCTTTTCCCCCEEEETTEECCC----CSSSEEEE---TT--
T ss_pred EEEEEeCCCCCcccccccccceEEecCCCeEEEEecccccccCCCCCCEEEEEECCEECCC----ccceEeec---Cc--
Confidence 666654 3444433222 3468899999999998 8899999999999988742 12233222 24
Q ss_pred EEEEeecccCCCCeEEEEEEE-cCCCce---eEEEEEEEECCCCCCCCeEEeCCCc-eeecCCCcEEEEEEEcc--CceE
Q psy574 251 LLKIQNVSRTAAPLIILCLGV-NAAGSD---LARASLTVSGPDPNPPPVILFGPAN-QTLPLRSEARLRCQVRG--EGSV 323 (977)
Q Consensus 251 ~L~I~~v~~~d~G~Y~~C~a~-n~~g~~---~~~~~l~V~~~~~~~pp~i~~~p~~-~~v~~g~~~~L~C~~~~--~p~i 323 (977)
.|.|.+++.+|+|.|+ |.|. |..|.. .....+.+.......+|.+...+.. ..+..|+.+.|.|.+.+ .|.+
T Consensus 163 ~L~i~~v~~~d~G~Y~-C~a~~n~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~i 241 (315)
T 1itb_B 163 RLIVMNVAEKHRGNYT-CHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIA 241 (315)
T ss_dssp EEEESSCCGGGCEEEE-EEEEEEETTEEEEEEEEEEEEEECCCCCCCCEECSCCSEEEECCSSSCEEEEEEEEECTTSEE
T ss_pred eEEEEeceehhCcEEE-EEEEcCCCCcEEEEEEEEEEEEecCCCCCCCEEecCCCCcEEEeCCCcEEEEEEEecCCCCee
Confidence 9999999999999999 9999 788876 3344555554444457888776664 47899999999999999 6789
Q ss_pred EEEECCEEcCCCCcEEE-----e----------cCceEEEeccCCCC-CeEEEEEEEcCCCceEEEEEEEEE
Q psy574 324 QWWRGEREVGSGPRVNV-----T----------GDGSLVLTDVTKED-SGEYTCVVKSPHGSASWSASLRFE 379 (977)
Q Consensus 324 ~W~~~g~~l~~~~~~~~-----~----------~~~sl~I~~v~~~d-~G~Y~C~a~n~~G~~~~s~~l~v~ 379 (977)
.|+++|..+....+... . ..+.|.|.++...| +|.|+|.|.|..|....++.|.|.
T Consensus 242 ~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~l~v~ 313 (315)
T 1itb_B 242 YWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIYP 313 (315)
T ss_dssp EEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGTSCEEEEEECTTCCEEEEEEEECC
T ss_pred EEEECCEECCcccccccccceeeeccCCCceeEEEEEEEEeecCHHHcCCceEEEEecCCCceeEEEEEEec
Confidence 99999999876542111 1 12379999999999 999999999999999998888774
No 99
>1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1
Probab=99.93 E-value=7.4e-25 Score=224.42 Aligned_cols=192 Identities=17% Similarity=0.179 Sum_probs=164.2
Q ss_pred CceEEEEEeeEeCCCeEEEEEEec--CCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEee
Q psy574 544 GSLIELTEVKPMTSTSVKLTWEIL--NTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFF 621 (977)
Q Consensus 544 ~~~~~~l~~~~~~~tsv~lsW~~p--~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n 621 (977)
+.+|.++++.. +.++|.|+|++| +++.+.+|.|+|+.......|...........+.+.+ +|+|++.|.|+|+|.|
T Consensus 6 P~~P~~~~~~~-~~~sv~l~W~~p~~~~~~i~~Y~v~~~~~~~~~~w~~~~~~~~~~~~~~~~-~L~p~t~Y~~~V~A~n 83 (205)
T 1cfb_A 6 PNAPKLTGITC-QADKAEIHWEQQGDNRSPILHYTIQFNTSFTPASWDAAYEKVPNTDSSFVV-QMSPWANYTFRVIAFN 83 (205)
T ss_dssp CCCCEEEEEEE-CSSEEEEEEECCCCTTSCCCEEEEEEEESSSTTCCEEEEEEEETTCSEEEE-ECCSSEEEEEEEEEEE
T ss_pred CCCCCCcEEEe-cCCEEEEEEECcccCCCceEEEEEEEecCCCCCCceeeeeccCCCceEEEE-eCCCCCEEEEEEEEEE
Confidence 44568899999 999999999999 6778999999998876567786554444456678888 9999999999999999
Q ss_pred cceeCCCC-CceEEeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecC-CcceEEEEec-CCc
Q psy574 622 GSVDGKPS-NLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGN-NSALINMTVS-AST 698 (977)
Q Consensus 622 ~~g~g~~s-~~~~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~-~~~~~~~~~~-~~~ 698 (977)
..|.|.++ ..+.++|.+.+|+.+|.++++...+.++|.|+|++|...+.||.|.+|.|+|+..+ ...+....+. ...
T Consensus 84 ~~G~~~~s~~~~~~~T~~~~P~~~P~~~~~~~~~~~sv~l~W~~p~~~~~ng~i~~Y~v~~~~~~~~~~~~~~~~~~~~~ 163 (205)
T 1cfb_A 84 KIGASPPSAHSDSCTTQPDVPFKNPDNVVGQGTEPNNLVISWTPMPEIEHNAPNFHYYVSWKRDIPAAAWENNNIFDWRQ 163 (205)
T ss_dssp TTEECCCCCCCCCEEECCCCCSCCCSCCEEECSSTTCEEEECCCCCGGGTCSSSCEEEEEEEESSTTCCCEEEEECCTTC
T ss_pred CCccCCCCCCceeEEcCCcCCCCCCeeeEeecCCCCeEEEEEECCCccccCCCceEEEEEEEECCCCCCcEEEEecCCCc
Confidence 99999999 67999999999988999999998888999999999965588999999999999866 3324444443 367
Q ss_pred CeEEecCCCCCceEEEEEEEEcCCCcCCC-CCceEEeecC
Q psy574 699 PTLLLTNLSAGIRYSVSLAATNRAGTGPY-SRPALLSLTS 737 (977)
Q Consensus 699 ~~~~l~~L~p~t~Y~~~V~A~~~~G~g~~-S~~~~~~t~~ 737 (977)
++++|.+|+|++.|.|+|+|+|.+|.|++ |+++.++|.+
T Consensus 164 ~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~ss~~v~~~T~e 203 (205)
T 1cfb_A 164 NNIVIADQPTFVKYLIKVVAINDRGESNVAAEEVVGYSGE 203 (205)
T ss_dssp CEEEECSCCSSCEEEEEEEEEETTEECSSCCCCEEEESSS
T ss_pred cEEEEcCCCCCcEEEEEEEEEcCCCcCCCCCCcEEEecCC
Confidence 89999999999999999999999999995 7888888765
No 100
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*
Probab=99.93 E-value=4.5e-25 Score=235.96 Aligned_cols=236 Identities=18% Similarity=0.199 Sum_probs=185.5
Q ss_pred eEEeCCCeEEEEEEecc-cCce--EEEEEECCeeCCCCceEEeccceEEEccC---ccCCCeE--EEEEEEeCCeeEEEE
Q psy574 109 TTVSASSIIVFECSVGG-DAVL--TVHWKRLGSAMPEDRMSVLPSRSLQLSDV---RLEDAGE--YVCEAENAVGKISAS 180 (977)
Q Consensus 109 ~~v~~G~~v~l~C~v~g-~p~~--~i~W~k~~~~l~~~~~~~~~~~~L~I~~v---~~~D~G~--Y~C~a~n~~g~~~~~ 180 (977)
..+.+|++++|.|.+.| .|.+ .|.|+|++..+.. .....+..|.+..+ +.+|+|. |+|.|.|..+..+..
T Consensus 13 ~~v~~G~~v~l~C~~~g~~p~p~~~v~W~k~~~~l~~--~~~~~~~~~~~~~~~~~~~~d~g~g~Y~C~a~n~~~~~~~~ 90 (265)
T 2oz4_A 13 RVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNP--TVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETL 90 (265)
T ss_dssp SEEETTEEEEEEEEEESCSCGGGCEEEEEETTEECCC--EEEECSSEEEEEEEEEECGGGCEEEEEEEEEEETTEEEEEE
T ss_pred ceEecCCCEEEEEEccCCCCCcceEEEEEeCCEECCc--eEeeCCCeEEEEeecccccccCCcceEEEEEecCCCCcEEE
Confidence 37899999999999988 7777 9999999998865 22234556777666 7788884 999999999998899
Q ss_pred EEEEEeeCCeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCccccEEEEEccCCceEEEEeecccC
Q psy574 181 ATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRT 260 (977)
Q Consensus 181 ~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~s~L~I~~v~~~ 260 (977)
+.|.|...|.....+....+.+|+.++|.|.+. |.+.+.| +|..+.. . ...+.|.|..+..+
T Consensus 91 ~~l~V~~~p~p~~~~~~~~v~~G~~v~l~C~~~--p~~~i~W--~g~~~~~-----~---------~~~~~l~i~~~~~~ 152 (265)
T 2oz4_A 91 QTVTIYSFPAPNVILTKPEVSEGTEVTVKCEAH--PRAKVTL--NGVPAQP-----L---------GPRAQLLLKATPED 152 (265)
T ss_dssp EEEEEECCCCCEEEESCSEEETTCEEEEEEECC--TTSEEEE--SSCSSSC-----C---------SSEECCEEECCGGG
T ss_pred EEEEEeCCCCceeecCCceecCCCcEEEEEEcc--CCCEEEE--CCEEccC-----C---------CCcEEEEEcccccc
Confidence 999998644433445677889999999999998 8899999 7765521 0 12247889999999
Q ss_pred CCCeEEEEEEEcCC-Ccee---EEEEEEEECCCCCCCCeEEe--CCCceeecCCCcEEEEEEEcc--CceEEEEECCEEc
Q psy574 261 AAPLIILCLGVNAA-GSDL---ARASLTVSGPDPNPPPVILF--GPANQTLPLRSEARLRCQVRG--EGSVQWWRGEREV 332 (977)
Q Consensus 261 d~G~Y~~C~a~n~~-g~~~---~~~~l~V~~~~~~~pp~i~~--~p~~~~v~~g~~~~L~C~~~~--~p~i~W~~~g~~l 332 (977)
|.|.|+ |.|.|.. |... ..+.|.|.. +|.+.. .|.+..+..|+.+.|.|.+.+ .|.+.|++++..+
T Consensus 153 ~~g~Y~-C~a~n~~~g~~~~~s~~~~l~V~~-----~p~~~~~~~p~~~~v~~g~~~~l~C~~~g~P~p~i~W~~~~~~~ 226 (265)
T 2oz4_A 153 NGRSFS-CSATLEVAGQLIHKNQTRELRVLY-----GPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFP 226 (265)
T ss_dssp TTEEEE-EEEEEECSSSEEEEEEEEEEEEEE-----EEECCGGGSCSEEEEETTCEECCCCCCEEESCCEEEEEETTTEE
T ss_pred CCceEE-EEEEcCCCCCcccccccEEEEEEe-----CCccccccCCCccEEcCCCeEEEEeECccCCCCeEEEEECCccc
Confidence 999999 9998654 6655 667788877 444333 356778899999999999998 6799999999732
Q ss_pred CCCCcEEEecCceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEEC
Q psy574 333 GSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFES 380 (977)
Q Consensus 333 ~~~~~~~~~~~~sl~I~~v~~~d~G~Y~C~a~n~~G~~~~s~~l~v~~ 380 (977)
. ..+.+. .+...|+|.|+|.|.|..|..+.++.|.|..
T Consensus 227 ~--------~~g~~~--~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 264 (265)
T 2oz4_A 227 L--------PIGESV--TVTRDLEGTYLCRARSTQGEVTREVTVNVLS 264 (265)
T ss_dssp C--------CTTSCE--ECCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred C--------CCCcEE--EeehhhCeEEEEEEECCCCcEEEEEEEEEec
Confidence 2 234333 3777899999999999999999999998874
No 101
>3se4_A Interferon alpha/beta receptor 1; type I interferon signaling complex, extracellular space, IM system receptor; HET: NAG; 3.50A {Homo sapiens} PDB: 3se3_A*
Probab=99.93 E-value=6.9e-26 Score=258.64 Aligned_cols=320 Identities=13% Similarity=0.050 Sum_probs=151.8
Q ss_pred EEeccCCCCCeEEEEEEEcCCCceEEEEEEEEECCCCCCCcccCCCCCCCCCCCCCCCeEEeeCCCceEEEEEcCCCCC-
Q psy574 347 VLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGLTLAWSRNNQIG- 425 (977)
Q Consensus 347 ~I~~v~~~d~G~Y~C~a~n~~G~~~~s~~l~v~~~~~~~~~~~~~~~~~~~p~~P~~~~v~~~~~~sv~lsW~~p~~~~- 425 (977)
+..++.+...+.++..|.| .+.+.++....+. +......+||. +.+... .+++.|+|. |....
T Consensus 68 t~~~l~~~~~Y~~rV~A~n-~~~S~~s~~~~~~------------~~~~~~~~pP~-v~~~~~-~~si~v~w~-P~~~~g 131 (414)
T 3se4_A 68 SSLKLNVYEEIKLRIRAEK-ENTSSWYEVDSFT------------PFRKAQIGPPE-VHLEAE-DKAIVIHIS-PGTKDS 131 (414)
T ss_dssp CSSCCCTTSCEEEEEEEEE-TTEEEEEECCCBC------------HHHHCCCCCCE-EEEEEC-SSCEEEEEE-CSSSSC
T ss_pred CcccccCCCcEEEEEEEee-CCcCCCEecCcee------------ecccceeCCCe-EEEEEc-CCEEEEEEE-cCCCCC
Confidence 3345677788999999999 5544333211110 00112345664 665544 468999999 65322
Q ss_pred -----CcccceEEEEEeecCCCCCCCCCCCCcccEEEeceecCcCeEEEEccCCCCeEEEEEEEEcC--CCCCCCCCCCc
Q psy574 426 -----SSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNS--HGLSAPSPLSD 498 (977)
Q Consensus 426 -----~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~--~G~s~~S~~s~ 498 (977)
++.+.+|.|.|...+... .+. . .....+++|.+|.|++.|.|+|+|.|. .|.|.+|+...
T Consensus 132 ~~~~~~~~~~~Y~v~y~~~~~~~----------~~~-~--~~~~~~~~i~~L~p~t~Y~~~V~A~n~~~~g~g~~S~~~~ 198 (414)
T 3se4_A 132 VMWALDGLSFTYSLVIWKNSSGV----------EER-I--ENIYSRHKIYKLSPETTYCLKVKAALLTSWKIGVYSPVHC 198 (414)
T ss_dssp TTTGGGGSSCEEEEEEEETTTCC----------EEE-E--EEECSEEEECCCCTTCEEEEEEEEECTTTCCEEEECCCEE
T ss_pred ceeeeecCcEEEEEEEEECCCCc----------eEE-E--ecCCcEEEEcCCCCCCeEEEEEEEEeccCCCCCccCcccc
Confidence 246789999998865542 232 2 345678999999999999999999994 67777775533
Q ss_pred eEEeeccccccccccCCcceeecCCCCCCCcchHHHHhhcccccCCceEEEEEeeEeCCCeEEEEEEecCCCccceEEEE
Q psy574 499 EIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPMTSTSVKLTWEILNTDYIEGVYIY 578 (977)
Q Consensus 499 ~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~g~~~~~~~~~l~~~~~~~~~~l~~~~~~~tsv~lsW~~p~~~~i~~Y~v~ 578 (977)
+.+..+.+ ..++.++.+...+ +++.|+|++|.. ..+|.|+
T Consensus 199 -~~t~~~~~------------------------------------~~~P~~v~~~~~~-~~~~l~W~pp~~--~~~Y~v~ 238 (414)
T 3se4_A 199 -IKTTVENE------------------------------------LPPPENIEVSVQN-QNYVLKWDYTYA--NMTFQVQ 238 (414)
T ss_dssp -EECCSCCS------------------------------------SCCCEEEEEEEET-TEEEEEEECSSS--SCEEEEE
T ss_pred -cccccccc------------------------------------cCCCCccEEEEec-CCeEEEECCCCC--CeEEEEE
Confidence 23312211 1223678887776 679999999842 3499999
Q ss_pred EEec-------CCCCCceEEEEeecCccceEEEC-CCCCCcEEEEEEEEeecceeCCCCCceEEeccCCCCCCCCceeEE
Q psy574 579 SRGL-------DPPASVAMLTVLHAGEASGFLVT-GLAHYSRYEFFLVPFFGSVDGKPSNLRAVRTLECEPSGVPQLTDP 650 (977)
Q Consensus 579 y~~~-------~~~~~~~~~~~~~~~~~~~~~i~-~L~p~t~Y~~~V~a~n~~g~g~~s~~~~~~T~~~~P~~~P~~v~~ 650 (977)
|+.. +....|...........+.+.|+ +|.+++.|.|+|+|.|..|.|++|....|.|.++++.+||. +++
T Consensus 239 y~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~t~~l~~~~~Y~~rV~A~n~~g~s~~s~~~~~~t~~~~~~~pP~-l~~ 317 (414)
T 3se4_A 239 WLHAFLKRNPGNHLYKWKQIPDCENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFWSEEIKFDTEIQAFLLPPV-FNI 317 (414)
T ss_dssp EEESGGGSCCCC--CCCCBCSTTTTBSSSEEEEEGGGSCSSEEEEEEEEECSSSEEEECCCEEEETTCC-----------
T ss_pred EEehhccccccccccCceECCCccCCCCCEEcCCcccccCccEEEEEEEecCCCcccccccccccchhccccCCCe-EEE
Confidence 9974 12356654322222345677886 69999999999999999999999999999999998888997 888
Q ss_pred EEecCcEEEEEeeCCCCCC----CCeeeeEEEEEEEecCCcceEEEEecCCcCeEEecCCCCCceEEEEEEEEcC----C
Q psy574 651 VLLNATSVLLKWKPPPVGT----HNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNR----A 722 (977)
Q Consensus 651 ~~~~~~sv~v~W~~p~~~~----~ng~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~----~ 722 (977)
... .+++.|.|++|.... .+|.+.+|+|.|++.+...... +..+.++++|.+|+|++.|.|+|+|++. +
T Consensus 318 ~~~-~~si~v~W~~P~~~~~~~~~~~~~~~Y~v~y~~~~~~~~~~--~~~~~~~~~l~~L~p~t~Y~~~V~A~~~~~~~~ 394 (414)
T 3se4_A 318 RSL-SDSFHIYIGAPKQSGNTPVIQDYPLIYEIIFWENTSNAERK--IIEKKTDVTVPNLKPLTVYCVKARAHTMDEKLN 394 (414)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEC-CCeEEEEEECCCCccccchhhcCCeEEEEEEEECCCCceEE--EEecCCeEEeCCCCCCCeEEEEEEEEecccccC
Confidence 754 579999999994221 2357899999998854222211 2346788999999999999999999993 6
Q ss_pred CcCCCCCceEEeecCCC
Q psy574 723 GTGPYSRPALLSLTSGP 739 (977)
Q Consensus 723 G~g~~S~~~~~~t~~~~ 739 (977)
|.|++|.++.++|.+..
T Consensus 395 g~g~~S~~~~~~T~~~~ 411 (414)
T 3se4_A 395 KSSVFSDAVCEKTKPGN 411 (414)
T ss_dssp -----------------
T ss_pred CCCCCCCCEeEEeCCCC
Confidence 99999999999886543
No 102
>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}
Probab=99.93 E-value=2.1e-25 Score=244.37 Aligned_cols=262 Identities=18% Similarity=0.278 Sum_probs=194.1
Q ss_pred CceEEeCCCeEEEEEEec-ccCceEEEEEECCeeCC------------------CCceEEe----ccceEEEccCccCCC
Q psy574 107 KDTTVSASSIIVFECSVG-GDAVLTVHWKRLGSAMP------------------EDRMSVL----PSRSLQLSDVRLEDA 163 (977)
Q Consensus 107 ~~~~v~~G~~v~l~C~v~-g~p~~~i~W~k~~~~l~------------------~~~~~~~----~~~~L~I~~v~~~D~ 163 (977)
.++.+.+|++++|.|.+. +.+.+.|.|+|++.... .+|..+. .+.+|.|.+++.+|+
T Consensus 7 p~vtv~~G~~v~L~C~v~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~ 86 (308)
T 4fom_A 7 PHVTAVWGKNVSLKCLIEVNETITQISWEKIHGKSSQTVAVHHPQYGFSVQGEYQGRVLFKNYSLNDATITLHNIGFSDS 86 (308)
T ss_dssp CSCEEETTSCEEECCBCCCSSCEEEEEEEEESSSCEEEEEEECSSSCEEECTTTTTTEEESCCSSSBCCEEECSCCGGGC
T ss_pred CEeEEEcCCcEEEEEEecCCCCCcEEEEEECCCCCCceEEEecCCCCceecCcccceEEeeccCCCceEEEEccCCHHHC
Confidence 367889999999999985 45566899999754321 1233322 345799999999999
Q ss_pred eEEEEEEEeC-CeeEEEEEEEEEeeCCeEE--ecCCCcEEeeCCeEEEEEEE-ecCCCCeEEEEEcCeeeeecCCCc-cc
Q psy574 164 GEYVCEAENA-VGKISASATLTVQMAPIVR--ERPSDLRLEVGRDAVFLCGI-EGSPPPSTFWMLEGNRSLIYPGDR-VD 238 (977)
Q Consensus 164 G~Y~C~a~n~-~g~~~~~~~L~V~~~p~~~--~~p~~~~v~~G~~v~L~C~~-~g~p~~~i~W~~~g~~~~~~~~~~-~~ 238 (977)
|.|+|.|.|. .+..+..+.+.+..+|.+. ..+.......|+.+.|.|.+ .|.|.+.+.|++++..+....... ..
T Consensus 87 G~Y~C~a~n~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~C~~~~g~P~~~i~W~~~~~~~~~~~~~~~~~ 166 (308)
T 4fom_A 87 GKYICKAVTFPLGNAQSSTTVTVLVEPTVSLIKGPDSLIDGGNETVAAICIAATGKPVAHIDWEGDLGEMESTTTSFPNE 166 (308)
T ss_dssp EEEEEEEEETTTEEEEEEEEEEEEBCCEEEEEECSSCCCTTCSCEEEEEEEEEEEBSCCEEEECCCSSBCCEEEEECTTS
T ss_pred EEEEEEEeeCCCcceeeeeEEEeeeccccccccccceeEEcCCceEEEEEEecCCcCCceEEEEECCcccccccceeeee
Confidence 9999999986 5667788888888766543 34555567789999999976 689999999999987763211000 11
Q ss_pred cEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEE--EEEEECCCCCCCCeEEe-CCCceeecCCCcEEEEE
Q psy574 239 NIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARA--SLTVSGPDPNPPPVILF-GPANQTLPLRSEARLRC 315 (977)
Q Consensus 239 ~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~--~l~V~~~~~~~pp~i~~-~p~~~~v~~g~~~~L~C 315 (977)
... ..+.|.|..+..+|.|.|+ |.|.|..+...... .|.|.. +|.+.. ......+..|+.+.|.|
T Consensus 167 ~~~------~~s~l~i~~~~~~d~g~Y~-C~a~n~~~~~~~~~~~~l~V~~-----~P~~~~~~~~~~~~~~g~~v~l~C 234 (308)
T 4fom_A 167 TAT------IISQYKLFPTRFARGRRIT-CVVKHPALEKDIRYSFILDIQY-----APEVSVTGYDGNWFVGRKGVNLKC 234 (308)
T ss_dssp CEE------EEEEEEECCCGGGTTCEEE-EEEECTTCSSCEEEEEECCCCE-----EEEECCBCCCSCEETTCCSCEEEC
T ss_pred ccc------ccccceEEeeeecCCccEE-EEEEccCCCCceEEeEEEEEec-----CCeeEEcccceeeeeccccEEEEE
Confidence 111 1237999999999999999 99999887765444 444444 455543 34455677889999999
Q ss_pred EEcc--Cc-eEEEEECCEEcCCCCcEEEecCceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEECCC
Q psy574 316 QVRG--EG-SVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPT 382 (977)
Q Consensus 316 ~~~~--~p-~i~W~~~g~~l~~~~~~~~~~~~sl~I~~v~~~d~G~Y~C~a~n~~G~~~~s~~l~v~~~~ 382 (977)
.+.+ .| .+.|++++..+..... ......+.|.++...|+|.|+|.|.|..|..+.++.|.|.++|
T Consensus 235 ~~~g~P~p~~v~W~k~~~~~~~~~~--~~~~~~l~i~~v~~~d~G~Y~C~A~N~~G~~~~~~~l~V~~~P 302 (308)
T 4fom_A 235 NADANPPPFKSVWSRLDGQWPDGLL--ASDNTLHFVHPLTFNYSGVYICKVTNSLGQRSDQKVIYISDPP 302 (308)
T ss_dssp CEEEESCEEEEECCBSSSCCCSSCB--CSTTEEECCSCCCSCCCSEEEEEEEETTEEEEEEEECCEECCC
T ss_pred EEecCCCCcEEEEEECCeECCCcEE--EcCCeEEEECCCChhhCEEEEEEEEeCCCcEEEEEEEEEEcCC
Confidence 9999 45 5999999987755422 1233346678999999999999999999999999999998664
No 103
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Probab=99.93 E-value=1.4e-24 Score=237.35 Aligned_cols=264 Identities=19% Similarity=0.237 Sum_probs=197.4
Q ss_pred cCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCC--ceEEe--cc--ceEEEccCccCCCeEEEEEEE
Q psy574 98 VKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED--RMSVL--PS--RSLQLSDVRLEDAGEYVCEAE 171 (977)
Q Consensus 98 ~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~--~~~~~--~~--~~L~I~~v~~~D~G~Y~C~a~ 171 (977)
.+|.|...|.+..+.+|+++.|.|.+.|.|.+.+.|+|++..+... ++.+. .+ ..|.|.+++.+|+|.|+|.|.
T Consensus 3 ~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~ 82 (305)
T 2nzi_A 3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRAT 82 (305)
T ss_dssp CCCEEEECCCCEEECTTCCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEESSCCGGGCSEEEEEEE
T ss_pred CCCeeeecccceEEeCCCcEEEEEEEeCCCCCeEEEEECCEEcccCCCeEEEEECCCCEEEEEEccCChhhCeEEEEEEE
Confidence 4788999999999999999999999999999999999999988643 44432 23 389999999999999999999
Q ss_pred eCCeeEEEEEEEEEeeCCeEEec-----CCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCccccEEEEEcc
Q psy574 172 NAVGKISASATLTVQMAPIVRER-----PSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITS 246 (977)
Q Consensus 172 n~~g~~~~~~~L~V~~~p~~~~~-----p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~ 246 (977)
|..|..+..+.|.|..+|.+... +....+.+|+.+.|.|.+.+.|.+.+.|++++..+. ...++.+...
T Consensus 83 n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~-----~~~~~~~~~~- 156 (305)
T 2nzi_A 83 NQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLID-----NNGHYQVIVT- 156 (305)
T ss_dssp ETTEEEEEEEEEEECEEEEECCCHHHHSSCCEEEETTCCEEEEEEEEEESCCEEEEEESSSBCC-----SSSSCEEEEC-
T ss_pred cCCCCccceEEEEEecCCccCCCccccccccEEecCCCEEEEEEEECCCCCCEEEEEECCEECC-----CCCcEEEEEc-
Confidence 99999999999999987776433 356688899999999999999999999999987663 3345555433
Q ss_pred CCceEEEEee-cccCCCCeEEEEEEEcCCCceeEEEEEEEECCCCCCCCeEEeCCCceeecCCCcEEEEEEEcc----Cc
Q psy574 247 DGMNLLKIQN-VSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG----EG 321 (977)
Q Consensus 247 ~g~s~L~I~~-v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~~~~~~pp~i~~~p~~~~v~~g~~~~L~C~~~~----~p 321 (977)
.....|.|.+ +...|.|.|+ |.|.|..|.....+.|.|...+. +|... ......+..+.|.|.... .+
T Consensus 157 ~~~~~l~i~~~~~~~d~G~Y~-C~a~N~~G~~~~~~~l~v~~~P~--~p~~~----~~~~~~~~~v~l~w~~p~~~g~~~ 229 (305)
T 2nzi_A 157 RSFTSLVFPNGVERKDAGFYV-VCAKNRFGIDQKTVELDVADVPD--PPRGV----KVSDVSRDSVNLTWTEPASDGGSK 229 (305)
T ss_dssp SSEEEEEETTCCCSTTCEEEE-EEEEETTEEEEEEEEEEEEBCCC--CCEEE----EEESCCSSCEEEEEECCSCCSBSC
T ss_pred CCceEEEEecCCccCccEEEE-EEEEeCCCceeeEEEEEEecCCC--CCCCc----eeeeccCCEEEEEEcCCccCCCCc
Confidence 2345899999 9999999999 99999999999999999987432 22211 111134556666666421 22
Q ss_pred eEEEEECCEEcCCCC--cEEEecCceEEEeccCCCCCeEEEEEEEcCCCceEEEE
Q psy574 322 SVQWWRGEREVGSGP--RVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSA 374 (977)
Q Consensus 322 ~i~W~~~g~~l~~~~--~~~~~~~~sl~I~~v~~~d~G~Y~C~a~n~~G~~~~s~ 374 (977)
.+.+........... .........+.|.++.+.+.|.|+|.|.|..|.+..+.
T Consensus 230 i~~y~v~~~~~~~~~w~~~~~~~~~~~~i~~l~~~~~y~~~~~A~N~~G~~~~S~ 284 (305)
T 2nzi_A 230 ITNYIVEKCATTAERWLRVGQARETRYTVINLFGKTSYQFRVIAENKFGLSKPSE 284 (305)
T ss_dssp EEEEEEEEEETTSCCEEEEEEESSSEEEECSCCSSCEEEEEEEEEETTEECCCCC
T ss_pred eeEEEEEEecCCCCccEECccccCceEEecCCCCCCeEEEEEEEEeCCcccCCcC
Confidence 222211111111111 11112256799999999999999999999999775443
No 104
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D
Probab=99.93 E-value=2.8e-25 Score=244.27 Aligned_cols=263 Identities=16% Similarity=0.171 Sum_probs=184.2
Q ss_pred EEEEEEcCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceEEeccceEEEccCccCCCeEEEEEEE
Q psy574 92 AVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAE 171 (977)
Q Consensus 92 ~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~ 171 (977)
+...+..+|.+...|. ..+.+|++++|.|.+.+. .+.+.|+|++..+..........+.|.|.+++.+|+|.|+|.|.
T Consensus 17 ~~~~~~~~P~i~~~p~-~~v~~G~~v~L~C~~~~~-~~~~~W~k~g~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~ 94 (316)
T 3vh8_G 17 SHMGGQDKPFLSAWPS-AVVPRGGHVTLRCHYRHR-FNNFMLYKEDRIHIPIFHGRIFQESFNMSPVTTAHAGNYTCRGS 94 (316)
T ss_dssp -------CCEEEEESC-SEEETTSCEEEEEEBTTB-CCSEEEEESSCSSSCHHHHCCBSSCEEECSCCGGGCEEEEEEEB
T ss_pred cccCCCCCCEeeccCC-CccCCCCCEEEEEEccCC-CceEEEEeCCCccceeecCCcceEEEEECCCCcccCeEEEEEEE
Confidence 3445667899988887 678899999999999877 67899999998765422122256789999999999999999998
Q ss_pred eCC-----eeEEEEEEEEEee---CCeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCccccEEEE
Q psy574 172 NAV-----GKISASATLTVQM---APIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAE 243 (977)
Q Consensus 172 n~~-----g~~~~~~~L~V~~---~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~ 243 (977)
|.. +..+..+.|.|.. +|.+...+... +.+|+.++|.|.+. .+.+.+.|++++..+... ......
T Consensus 95 ~~~~~~~~~~~s~~~~l~V~~~~~~p~~~~~~~~~-v~~G~~v~L~C~~~-~~~~~~~w~k~g~~~~~~-----~~~~~~ 167 (316)
T 3vh8_G 95 HPHSPTGWSAPSNPVVIMVTGNHRKPSLLAHPGPL-VKSGERVILQCWSD-IMFEHFFLHKEGISKDPS-----RLVGQI 167 (316)
T ss_dssp CSSSSSSBCCCCCCEEEEEECSSCCCEEEEESCSE-EETTCCEEEEEEES-SCCSEEEEEETTCCSCCE-----EEECEE
T ss_pred cCCCCcceecCCCcEEEEEecCCCCCeEEecCCCc-cCCCCeEEEEEcCC-CCCcEEEEEECCCccccc-----eeeeee
Confidence 632 2345567777763 45666666554 88999999999995 456789999998765311 111111
Q ss_pred EccCCceEEEEeecccCCCCeEEEEEEEcCCCce-----eEEEEEEEECCCCCCCCeEEeCCCceeecCCCcEEEEEEEc
Q psy574 244 ITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSD-----LARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVR 318 (977)
Q Consensus 244 ~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~-----~~~~~l~V~~~~~~~pp~i~~~p~~~~v~~g~~~~L~C~~~ 318 (977)
........|.|.+++.+|+|.|+ |.|.|..|.. +....|.|... ..+|.+...+.. .+..|+.++|.|.+.
T Consensus 168 ~~~~~~~~L~i~~v~~~D~G~Y~-C~a~n~~g~~~~s~~s~~~~l~V~~~--~~~p~i~~~~~~-~v~~G~~v~L~C~~~ 243 (316)
T 3vh8_G 168 HDGVSKANFSIGPMMLALAGTYR-CYGSVTHTPYQLSAPSDPLDIVVTGP--YEKPSLSAQPGP-KVQAGESVTLSCSSR 243 (316)
T ss_dssp ETTEEEEEEEECSCCGGGCEEEE-EEEECTTCTTBCCCCCCCEEEEEECS--SCCCEEEEESCS-CCCTTSCCEEEEEES
T ss_pred cCCCceEEEEECCCChhhCceEE-EEEecCCCCccccCCCCCEEEEecCC--CCCCeEEeCCCC-eecCCCcEEEEEECC
Confidence 11112248999999999999999 9999998742 44556777652 235666665543 678999999999998
Q ss_pred c-CceEEEEECCEEcCCCCcEEEec----CceEEEeccCCCCCeEEEEEEEcCCCc
Q psy574 319 G-EGSVQWWRGEREVGSGPRVNVTG----DGSLVLTDVTKEDSGEYTCVVKSPHGS 369 (977)
Q Consensus 319 ~-~p~i~W~~~g~~l~~~~~~~~~~----~~sl~I~~v~~~d~G~Y~C~a~n~~G~ 369 (977)
. .+.+.|+++|..+.......... .+.|.|.++. |+|.|+|.|.|..+.
T Consensus 244 ~~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~--D~G~Y~C~a~n~~~~ 297 (316)
T 3vh8_G 244 SSYDMYHLSREGGAHERRLPAVRKVNRTFQADFPLGPAT--HGGTYRCFGSFRHSP 297 (316)
T ss_dssp SCCSEEEEEETTSSCCEEEECEECTTSCEEEEEECC-------CEEEEEEEBTTBT
T ss_pred CCCcEEEEEECCCcCCCceeceeccCCceeEEEEcCCcC--CCEEEEEEeecCCCc
Confidence 8 78999999998764321111111 1469999999 999999999998764
No 105
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Probab=99.93 E-value=1.6e-24 Score=239.43 Aligned_cols=258 Identities=19% Similarity=0.292 Sum_probs=179.8
Q ss_pred eEEeCCCceEEeCCCeEEEEEEeccc-CceEEEEEECCeeCC----------CCceEEe--------ccceEEEccCccC
Q psy574 101 YIIRGPKDTTVSASSIIVFECSVGGD-AVLTVHWKRLGSAMP----------EDRMSVL--------PSRSLQLSDVRLE 161 (977)
Q Consensus 101 ~~~~~p~~~~v~~G~~v~l~C~v~g~-p~~~i~W~k~~~~l~----------~~~~~~~--------~~~~L~I~~v~~~ 161 (977)
.+...|.+..+.+|+++.|.|.+.+. |.+.|.|+|++.... ..++... ...+|.|.+++.+
T Consensus 5 ~v~~~p~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~ 84 (327)
T 2wng_A 5 QVIQPDKSVSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNITPA 84 (327)
T ss_dssp CEECCCSEEEEETTSCEEECCEESCCCSCCCEEEEESCSTTCEEEEETTSSCCTTEEECC---CTTCCBCCEEECSCCGG
T ss_pred EEEcCCCceEEecCCcEEEEEEccCcCCCceEEEEECCCCCceEEEEcCCCCcceeeeecccccccCceeEEEEccCccc
Confidence 46667888999999999999999887 888999999976532 1244432 3457999999999
Q ss_pred CCeEEEEEEEeCCee-----EEEEEEEEEeeCCeE-EecCCCcEEeeCCeEEEEEEEecCCCC--eEEEEEcCeeeeecC
Q psy574 162 DAGEYVCEAENAVGK-----ISASATLTVQMAPIV-RERPSDLRLEVGRDAVFLCGIEGSPPP--STFWMLEGNRSLIYP 233 (977)
Q Consensus 162 D~G~Y~C~a~n~~g~-----~~~~~~L~V~~~p~~-~~~p~~~~v~~G~~v~L~C~~~g~p~~--~i~W~~~g~~~~~~~ 233 (977)
|+|.|+|.|.|..+. ....+.|.|..+|.. ........+.+|+.++|.|.+.+.|++ .+.|+++|..+....
T Consensus 85 D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~p~~p~i~~~~~~~~~g~~~~l~C~~~g~p~~~~~v~W~k~g~~l~~~~ 164 (327)
T 2wng_A 85 DAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAARATPQHTVSFTCESHGFSPRDITLKWFKNGNELSDFQ 164 (327)
T ss_dssp GCEEEEEEEEESSTTCEEEEECCCEEEEEEBCCCCCEEECCSSCBCTTCEEEEEEEEEEEBSSCCEEEEEETTEECCCEE
T ss_pred cCeEEEEEeecCCCcceeEeecCcEEEEEEecCCCceeeccccccCCCCEEEEEEEEeCccCCCcEEEEEECCEEccccc
Confidence 999999999998653 224568888765432 122334678899999999999988766 899999998763211
Q ss_pred -----CCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCce---eEEEEEEEECCCCCCCCeEEeCCCceee
Q psy574 234 -----GDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSD---LARASLTVSGPDPNPPPVILFGPANQTL 305 (977)
Q Consensus 234 -----~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~---~~~~~l~V~~~~~~~pp~i~~~p~~~~v 305 (977)
....+.+.+. +.|.|.....+|.|.|+ |.|.|..+.. ...+.+.+.. ..+|.+...+.. +
T Consensus 165 ~~~~~~~~~~~~~~~------s~L~i~~~~~d~~g~Y~-C~a~n~~~~~~~~~~~~~~~~~v---~~~P~i~~~~~~--~ 232 (327)
T 2wng_A 165 TNVDPVGESVSYSIH------STAKVVLTREDVHSQVI-CEVAHVTLQGDPLRGTANLSETI---RVPPTLEVTQQP--V 232 (327)
T ss_dssp EEEECSSCCSCEEEE------EEEEEECCTTGGGCEEE-EEEECTTSCSCCEEEEEEGGGTB---CBCCEEEEEEEC--C
T ss_pred cccccccCCCceEEE------EEEEEechhcCcCceEE-EEEeccccCCCcccceEEecccc---CCCCEEEEecCC--c
Confidence 0011122222 26888887777889999 9999998763 3333332221 226666554443 7
Q ss_pred cCCCcEEEEEEEcc--Cc--eEEEEECCEEcCCC--CcEEEecCc------eEEEeccCCCCCeEEEEEEEcCCCce
Q psy574 306 PLRSEARLRCQVRG--EG--SVQWWRGEREVGSG--PRVNVTGDG------SLVLTDVTKEDSGEYTCVVKSPHGSA 370 (977)
Q Consensus 306 ~~g~~~~L~C~~~~--~p--~i~W~~~g~~l~~~--~~~~~~~~~------sl~I~~v~~~d~G~Y~C~a~n~~G~~ 370 (977)
..|+.+.|.|.+.+ ++ .+.|++||..+... .++....++ .|.|..+...|.|.|+|.|.|..|..
T Consensus 233 ~~G~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~~~~ 309 (327)
T 2wng_A 233 RAENQVNVTCQVRKFYPQRLQLTWLENGNVSRTETASTVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQVEHDGQPA 309 (327)
T ss_dssp SSTTCCEEEEEEEEEBSSCEEEEEEETTEEEEEEECCSCEECTTSCEEEEEEEEC-------CCEEEEEEEETTCCC
T ss_pred CCCCcEEEEEEEccccCCCcEEEEEECCeEccCcccCceEECCCCcEEEEEEEEEccccccCCCEEEEEEEeCCCCC
Confidence 79999999999998 33 79999999987532 223333343 37788888899999999999999865
No 106
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}
Probab=99.93 E-value=2e-25 Score=242.27 Aligned_cols=265 Identities=18% Similarity=0.219 Sum_probs=202.9
Q ss_pred cCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceEEe---ccceEEEccCccCCCeEEEEEEEeCC
Q psy574 98 VKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVL---PSRSLQLSDVRLEDAGEYVCEAENAV 174 (977)
Q Consensus 98 ~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~---~~~~L~I~~v~~~D~G~Y~C~a~n~~ 174 (977)
.+|.+...+.+..+.+|+++.|.|.+.+. +.|++++.. +.... ..+.|.|.+++.+|+|.|+|.+.|..
T Consensus 3 ~~P~i~~~~~~~~v~~G~~v~L~C~~~~~----v~W~~~~~~----~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~ 74 (292)
T 4dkd_C 3 SIPVIEPSVPELVVKPGATVTLRCVGNGS----VEWDGPPSP----HWTLYSDGSSSILSTNNATFQNTGTYRCTEPGDP 74 (292)
T ss_dssp -CCEEESCCSSCEECTTCCEEEEEECSSC----CCBCCCCCS----SCEECCBTTEEEEEESSCCGGGCSCEEECCCC--
T ss_pred CCceecCCCCeEEEcCCCcEEEEEcCCCc----eEEccCCCC----ceEEeccCceEEEEEcccccccCEEEEEEEccCC
Confidence 57888888989999999999999999874 999976543 22222 23589999999999999999999988
Q ss_pred eeEEEEEEEEEeeCCe-EEecCCCcEEeeCCeEEEEEEEecCCC--CeEEEEEcCeeeeecCCCccccEEEEEccCCceE
Q psy574 175 GKISASATLTVQMAPI-VRERPSDLRLEVGRDAVFLCGIEGSPP--PSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNL 251 (977)
Q Consensus 175 g~~~~~~~L~V~~~p~-~~~~p~~~~v~~G~~v~L~C~~~g~p~--~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~s~ 251 (977)
+..+..+.|.|..+|. +...+....+.+|+.++|.|.+.+ |. +.+.|++++..... ...++.... .+ .
T Consensus 75 ~~~~~~~~l~V~~~~~~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~~v~W~~~~~~~~~----~~~~~~~~~--~~--~ 145 (292)
T 4dkd_C 75 LGGSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTD-PVLEAGVSLVRVRGRPLM----RHTNYSFSP--WH--G 145 (292)
T ss_dssp --CCEEECCEECCSSCCEEESCSEEEEETTSCEECCEEESS-GGGGSSEEEEEGGGCCCC----SSCCEECCS--SS--C
T ss_pred CCcceEEEEEEcCccccccccCCeEEEcCCCcEEEeeeCCC-CCcceeEEEEecCCCccc----cCCcccccC--Cc--e
Confidence 8888899999998776 456677889999999999999987 44 78999998543321 222333222 23 5
Q ss_pred EEEeecccCCCCeEEEEEEEcCCCcee-EEEEEEEECCCCCCCCeEEeCCCceeecCCCcEEEEEEEcc---CceEEEEE
Q psy574 252 LKIQNVSRTAAPLIILCLGVNAAGSDL-ARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG---EGSVQWWR 327 (977)
Q Consensus 252 L~I~~v~~~d~G~Y~~C~a~n~~g~~~-~~~~l~V~~~~~~~pp~i~~~p~~~~v~~g~~~~L~C~~~~---~p~i~W~~ 327 (977)
|.|.+++.+|+|.|+ |.|.|..+... ..+.|.|.... ..+|.+...+....+..|+.+.|.|.+.+ .+.+.|++
T Consensus 146 L~i~~~~~~d~G~Y~-C~a~n~~~~~~s~~~~l~V~~~~-~~~p~i~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~w~~ 223 (292)
T 4dkd_C 146 FTIHRAKFIQSQDYQ-CSALMGGRKVMSISIRLKVQKVI-PGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQH 223 (292)
T ss_dssp CEETTCCGGGCSEEE-EEECSTTSCEECCCEEEEEECCC-CSSCEEEEESSCBCCCSSSCEEEEEEEEESSSCCEEECCB
T ss_pred EEECCCCHHHCeEEE-EEEEeCCCceeEEEEEEEEeCCC-CCCCeEEccCCceeEecCCCEEEEEEecCCCCceEEEEeC
Confidence 999999999999999 99998877553 46788887621 22677888888888889999999999998 34688888
Q ss_pred CCEEcCCCCcEEEe-----cCceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEECC
Q psy574 328 GEREVGSGPRVNVT-----GDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESP 381 (977)
Q Consensus 328 ~g~~l~~~~~~~~~-----~~~sl~I~~v~~~d~G~Y~C~a~n~~G~~~~s~~l~v~~~ 381 (977)
++..+......... ..++|.|.++...|+|.|+|.|.|..|..+.++.|.|...
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~ 282 (292)
T 4dkd_C 224 NNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVES 282 (292)
T ss_dssp SSCCCCCCBEEEEETTEEEEEEEEEESSCCTTSCEEEEEEEECSSCEEEEEEEECC---
T ss_pred CCcccccCccceeccceeeeEEEEEECccChhcCeEEEEEEecCCCCceeEEEEEEeeC
Confidence 88766544332222 2347999999999999999999999999999999988754
No 107
>3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain, fibron type III, cell adhesion; 1.80A {Homo sapiens} PDB: 1x5k_A
Probab=99.93 E-value=4.1e-24 Score=219.96 Aligned_cols=191 Identities=19% Similarity=0.245 Sum_probs=160.6
Q ss_pred CceEEEEEeeEeCCCeEEEEEEecC------CCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEE
Q psy574 544 GSLIELTEVKPMTSTSVKLTWEILN------TDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFL 617 (977)
Q Consensus 544 ~~~~~~l~~~~~~~tsv~lsW~~p~------~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V 617 (977)
+.+|.++++...+.++|+|+|++|. ++.+.+|.|+|+..+.. .+..... ....+++.|.+|+|++.|.|+|
T Consensus 5 ~~~P~~l~~~~~~~~si~l~W~~p~~~~~~~~~~i~~Y~v~~~~~~~~-~~~~~~~--~~~~~~~~i~~L~p~t~Y~~~V 81 (211)
T 3p4l_A 5 MMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPA-NTKYKNA--NATTLSYLVTGLKPNTLYEFSV 81 (211)
T ss_dssp CCCCEEEEEEECSSSCEEEEEECTTSCTTCCCCSSCEEEEEEEECC----CCCEEE--EESSSEEEECSCCTTCEEEEEE
T ss_pred CCCCCCEEEEecCCCeEEEEEeCCCCCcccccCCCcEEEEEEEECCCC-cceEEEe--CCCceEEEecCcCCCCEEEEEE
Confidence 3456889999999999999999972 57889999999987642 2222222 2466899999999999999999
Q ss_pred EEeecceeCCCCCceEEeccCCCCCCCCceeEEEEe--cCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCC---cceEEE
Q psy574 618 VPFFGSVDGKPSNLRAVRTLECEPSGVPQLTDPVLL--NATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNN---SALINM 692 (977)
Q Consensus 618 ~a~n~~g~g~~s~~~~~~T~~~~P~~~P~~v~~~~~--~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~---~~~~~~ 692 (977)
+|.|..|.|.+|..+.++|.+.+|..+|.++++... +.++|.|+|++| ...||.|.+|.|+|+..+. ..+...
T Consensus 82 ~A~n~~g~~~~S~~~~~~t~~~~P~~~P~~~~~~~~~~s~~sv~l~W~~p--~~~~g~i~~Y~v~~~~~~~~~~~~~~~~ 159 (211)
T 3p4l_A 82 MVTKGRRSSTWSMTAHGTTFELVPTSPPKDVTVVSKEGKPKTIIVNWQPP--SEANGKITGYIIYYSTDVNAEIHDWVIE 159 (211)
T ss_dssp EEEETTEECCCCCCEEEECCCCCCCSCCEEEEEEEETTEEEEEEEEEECC--TTCCSCCCEEEEEEESCTTSCGGGSEEE
T ss_pred EEEcCCCCCccceeEeeecccCCCCCCCcceEEEecCCCCCEEEEEECCC--CCCCCCEEEEEEEEEECCCCCCCceEEE
Confidence 999999999999999999999999889999999887 468999999998 6789999999999998652 233445
Q ss_pred EecCCcCeEEecCCCCCceEEEEEEEEcCCCcCCCCCceEEeecCCC
Q psy574 693 TVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGP 739 (977)
Q Consensus 693 ~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~~G~g~~S~~~~~~t~~~~ 739 (977)
.+.++.++++|.+|+|++.|.|+|+|+|.+|.|++|+++.+.+....
T Consensus 160 ~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~v~~~~~~~~ 206 (211)
T 3p4l_A 160 PVVGNRLTHQIQELTLDTPYYFKIQARNSKGMGPMSEAVQFRTPKAH 206 (211)
T ss_dssp EEESSCSEEEECCCCTTCEEEEEEEEEETTEECCCCCCEEEECC---
T ss_pred EecCCeeEEEEcCCCCCCEEEEEEEEEcCCccCCCCCCEEccCcccc
Confidence 66778999999999999999999999999999999999999886543
No 108
>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1
Probab=99.93 E-value=7.5e-26 Score=261.16 Aligned_cols=267 Identities=15% Similarity=0.212 Sum_probs=187.1
Q ss_pred ccceecccceEEeCCCcEEEEEECCCCCCCC-eEEEEeCCEEeecCCCceEEEe--------cCcEEEEcCCCCCCCeEE
Q psy574 6 EEFRVQPKSQRVAAGDTALLECGPPRGHPEP-TLVWKKNGHPIDFENSKRLRLV--------DGTNLAIQDSRKTDDGRY 76 (977)
Q Consensus 6 ~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~-~v~W~k~g~~l~~~~~~r~~~~--------~~g~L~I~~v~~~D~G~Y 76 (977)
|.+.+.+....+.+|+.++|.|.+..+.|.+ .|.|+|||+.+.........+. ..+.|.|.+++.+|+|.|
T Consensus 117 P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 196 (438)
T 1qgc_4 117 PTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSY 196 (438)
T ss_dssp CEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEEEEECCCTTTCCEEEEEEEEEEHHHHHTCCEE
T ss_pred CEEEecCCChhhccCCceEEEEEEccccCCCcEEEEEECCEEcCCCceeccccccCCCCcEEEEEEEEEeCcccCCCCeE
Confidence 4444433333344688999999984337777 9999999999853311111111 134799999999999999
Q ss_pred EEEEEecCceeeeEeEEEEEE--cCCeEEeCCCceEEeCCCeEEEEEEecccC--ceEEEEEEC--CeeCC---------
Q psy574 77 QCVVKNVAGTRESTDAVLRVL--VKPYIIRGPKDTTVSASSIIVFECSVGGDA--VLTVHWKRL--GSAMP--------- 141 (977)
Q Consensus 77 ~C~a~n~~g~~~s~~~~l~V~--~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p--~~~i~W~k~--~~~l~--------- 141 (977)
+|.|.|..+.. .+.+.+. .++.....|....+.+|++++|.|.+.|.| .+.+.|+|+ +..+.
T Consensus 197 ~C~a~n~~~~~---~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~ 273 (438)
T 1qgc_4 197 TCEATHKTSTS---PIVKSFNRNECEVMLVESGGGLVKPGGSLKLSCTASGFIFNRCAMSWVRQTPEKRLEWVATISSGG 273 (438)
T ss_dssp EEEEEETTCSS---CEEEEEETTC-CCEEEEECCEEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTS
T ss_pred EEEEEecccCC---ceecccccccceeEEecCCceEEecCCcEEEEEEEcccccCCcEEEEEECCCCCCcEEEEEEeecC
Confidence 99999987653 2333443 223444456677899999999999999887 679999997 43221
Q ss_pred ---------CCceEEec-----cceEEEccCccCCCeEEEEEEEeCCe-----eEEEEEEEEEe----eCCeEEecCCCc
Q psy574 142 ---------EDRMSVLP-----SRSLQLSDVRLEDAGEYVCEAENAVG-----KISASATLTVQ----MAPIVRERPSDL 198 (977)
Q Consensus 142 ---------~~~~~~~~-----~~~L~I~~v~~~D~G~Y~C~a~n~~g-----~~~~~~~L~V~----~~p~~~~~p~~~ 198 (977)
.+++.+.. ...|.|.+++.+|+|.|+|.|.|..+ .....+.|.|. .+|.+...+...
T Consensus 274 ~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~ 353 (438)
T 1qgc_4 274 TYTYYPDSVKGRFTISRDNAKNTLYLQMSSLRSADTAMYYCVRREDGGDEGFAYWGQGTVVTVSAAKTTPPSVYPLAPGS 353 (438)
T ss_dssp CCEECCGGGTTTEEEEEETTTTEEEEEECSCCGGGCCEEEEEECCSSSCCCCCSBCCCEEEEECSSCCBCCEEEEECCCG
T ss_pred CceecCcccCCcEEEEeecCCCeEEEEECCCChhhCEEEEEEEEccCCCccceeeCCCEEEEEecCCCCCCeEEEcCccc
Confidence 24555543 24899999999999999999998443 22344677776 456665555455
Q ss_pred EEeeCCeEEEEEEEecC-CCC-eEEEEEcCeeeeecCCC---ccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcC
Q psy574 199 RLEVGRDAVFLCGIEGS-PPP-STFWMLEGNRSLIYPGD---RVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNA 273 (977)
Q Consensus 199 ~v~~G~~v~L~C~~~g~-p~~-~i~W~~~g~~~~~~~~~---~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~ 273 (977)
.+.+|+.++|.|.+.|. |.+ .+.|+++|..+...... ..+.+.+. +.|.|.+++.+| |.|+ |.|.|.
T Consensus 354 ~~~~g~~v~L~C~~~g~~P~~~~v~W~~~g~~~~~~~~~~~~~~g~~~~~------s~L~i~~~~~~d-g~Y~-C~a~n~ 425 (438)
T 1qgc_4 354 AAAAASMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLS------SSVTVPSSTWPS-ETVT-CNVAHP 425 (438)
T ss_dssp GGCCSSEEEEEEEEESCBSSCCEEEEGGGTCCSSEEECCCEEETTEEEEE------EEEEEEEEHHHH-SCCE-EEEEEG
T ss_pred ccccCCcEEEEEEeccccCCCcEEEEecCCCCCceeecCccccCCcEEEE------EEEEEehhhcCC-ceEE-EEEEeC
Confidence 56789999999999997 877 99999998765321000 00112211 379999999889 9999 999999
Q ss_pred CCceeEEEEE
Q psy574 274 AGSDLARASL 283 (977)
Q Consensus 274 ~g~~~~~~~l 283 (977)
.|.......|
T Consensus 426 ~g~~~~~~~i 435 (438)
T 1qgc_4 426 ASSTKVDKKI 435 (438)
T ss_dssp GGTEEEEEEC
T ss_pred CCCcceeeec
Confidence 9986655543
No 109
>3s98_A Interferon alpha/beta receptor 1; human, type I interferons, receptor chain, ifnar1, fibronect III, type I interferon receptor chain; HET: NAG; 1.90A {Homo sapiens}
Probab=99.92 E-value=7e-24 Score=230.82 Aligned_cols=274 Identities=12% Similarity=0.095 Sum_probs=182.2
Q ss_pred CCCCCCCeEEeeCCCceEEEEEcCCCCCCcccceEEEEEeecCCCCCCCCCCCCcccEEEec--eecCcCeEEE--EccC
Q psy574 398 PGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVA--TNVPSPILTV--TNLT 473 (977)
Q Consensus 398 p~~P~~~~v~~~~~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~--~~~~~~~~~i--~~L~ 473 (977)
..+|.++++...+ ..+.|+|.++.+ +.+.+. |.|+|+..+.. .|.... .......+.+ ..|.
T Consensus 4 l~~P~nv~~~~~n-~~~iL~W~pp~~-~~~~v~-Y~V~y~~~~~~-----------~W~~~~~c~~~~~~~c~lt~~~l~ 69 (306)
T 3s98_A 4 LKSPQKVEVDIID-DNFILRWNRSDE-SVGNVT-FSFDYQKTGMD-----------NWIKLSGCQNITSTKCNFSSLKLN 69 (306)
T ss_dssp ----CCCEEEEET-TEEEEECC---------CE-EEEEEEESSCS-----------SCEECTTCSSBSSSEEECCC---C
T ss_pred CCCCcEeEEEEEC-CeEEEEEcCCCC-CCCCeE-EEEEEEECCCC-----------CcEECCCccCCCCCEEEccccccC
Confidence 5679999988764 457899999886 445555 99999876433 687642 2344455554 4578
Q ss_pred CCCeEEEEEEEEcCCCCCCCCCCCceEEeeccccccccccCCcceeecCCCCCCCcchHHHHhhcccccCCceEEEEEee
Q psy574 474 VGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVK 553 (977)
Q Consensus 474 p~t~Y~~~V~a~n~~G~s~~S~~s~~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~g~~~~~~~~~l~~~~~~~~~~l~~~ 553 (977)
|++.|.|+|+|.| .|.|.+|.... +.+....+ +. || . +.+.
T Consensus 70 ~~~~Y~~rV~A~n-~~~S~~s~~~~-f~~~~~~~---~~---------pP------------------------~-v~~~ 110 (306)
T 3s98_A 70 VYEEIKLRIRAEK-ENTSSWYEVDS-FTPFRKAQ---IG---------PP------------------------E-VHLE 110 (306)
T ss_dssp TTSCEEEEEEEEC-SSCEEEEECCC-BCHHHHCB---CC---------CC------------------------E-EEEE
T ss_pred CCCcEEEEEEEEe-CCcCCCEeeee-EechhhCc---cC---------CC------------------------e-EEEE
Confidence 9999999999999 77665543211 11111111 00 11 2 5555
Q ss_pred EeCCCeEEEEEEec-C-------CCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEee--cc
Q psy574 554 PMTSTSVKLTWEIL-N-------TDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFF--GS 623 (977)
Q Consensus 554 ~~~~tsv~lsW~~p-~-------~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n--~~ 623 (977)
... ++|.|+|+|+ . ++.+.+|+|.|++.+....|... ...+.+.|.+|+|++.|.|+|+|.+ ..
T Consensus 111 ~~~-~si~v~w~P~~~~~~~~~~~g~~l~Y~v~y~~~~~~~~~~~~-----~~~~~~~l~~L~p~t~Y~~~V~A~~~~~~ 184 (306)
T 3s98_A 111 AED-KAIVIHISPGTKDSVMWALDGLSFTYSLVIWKNSSGVEERIE-----NIYSRHKIYKLSPETTYCLKVKAALLTSW 184 (306)
T ss_dssp ECS-SCEEEEEECC---CCCC-----CCEEEEEEEETTTCCCEEEE-----EECTEEEECSCCTTCEEEEEEEEEEGGGT
T ss_pred EcC-CEEEEEEECCCCCCcceeccCCcEEEEEEEEECCCCCeEEEe-----cccceEEEccCCCCCeEEEEEEEEEccCC
Confidence 544 6899999966 3 35788999999998865555421 2357899999999999999999999 68
Q ss_pred eeCCCCCceEEeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEe--------cCCcceEEE--E
Q psy574 624 VDGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGG--------GNNSALINM--T 693 (977)
Q Consensus 624 g~g~~s~~~~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~--------~~~~~~~~~--~ 693 (977)
|.|+.|..+.++|.++.|+.+|.++.+...+ +++.|+|++| .... +|.+.|.. .+...+... -
T Consensus 185 g~g~~S~~~~~~T~~~~p~~~P~~v~~~~~~-~s~~l~W~~p--~~~~----~~~v~~~~gy~~~~~~~~~~~W~~~~~c 257 (306)
T 3s98_A 185 KIGVYSPVHCIKTTVENELPPPENIEVSVQN-QNYVLKWDYT--YANM----TFQVQWLHAFLKRNPGNHLYKWKQIPDC 257 (306)
T ss_dssp EECCCCCCEEEECCSCCSSCCCEEEEEEEET-TEEEEEEECS--SSSC----EEEEEEEEGGGGSCC----CCCEECGGG
T ss_pred CCCCCCCcEeeEecCCCcCCCCceEEEEEec-CEEEEEeCCC--CCcE----EEEEEEehhhhhccccccccCceECCCc
Confidence 9999999999999999998899999987765 7899999997 3222 34444432 122233311 0
Q ss_pred ecCCcCeEEecCC-CCCceEEEEEEEEcCCCcCCCCCceEEeecC
Q psy574 694 VSASTPTLLLTNL-SAGIRYSVSLAATNRAGTGPYSRPALLSLTS 737 (977)
Q Consensus 694 ~~~~~~~~~l~~L-~p~t~Y~~~V~A~~~~G~g~~S~~~~~~t~~ 737 (977)
.....+.+.+.+| .+...|.|||+|.|..|.|.+|+.+.|.|..
T Consensus 258 ~~~~~~~c~~~~~~~~~~~Y~~RV~A~n~~~~s~~s~~~~~~~~~ 302 (306)
T 3s98_A 258 ENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFWSEEIKFDTEI 302 (306)
T ss_dssp TTBSSSEEEEEGGGSCSSEEEEEEEEECSSCBCCCCCCEEEEC--
T ss_pred eeCCCccccCchhhcccCCEEEEEEEccCCCccccccccccCccc
Confidence 1235677888874 4555999999999999999999999997754
No 110
>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2
Probab=99.91 E-value=2.8e-24 Score=239.30 Aligned_cols=257 Identities=16% Similarity=0.265 Sum_probs=177.4
Q ss_pred ecccceEEeCCCcEEEEEECCCCC--CCCeEEEEeC--CEEee---------------cCCCceEEEecC-----cEEEE
Q psy574 10 VQPKSQRVAAGDTALLECGPPRGH--PEPTLVWKKN--GHPID---------------FENSKRLRLVDG-----TNLAI 65 (977)
Q Consensus 10 ~~p~~~~v~~G~~v~L~C~~~~g~--P~~~v~W~k~--g~~l~---------------~~~~~r~~~~~~-----g~L~I 65 (977)
.+|..+.+.+|++++|.|.+ .+. |.+.|.|+|+ |..+. .....|+.+..+ ++|.|
T Consensus 5 ~~p~~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I 83 (344)
T 1za6_B 5 VQSGAEVVKPGASVKISCKA-SGYTFTDHAIHWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLTADTSASTAYVEL 83 (344)
T ss_dssp EECCCEEECTTCCEEEEEEE-ESSCTTSSCEEEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEEEETTTTEEEEEE
T ss_pred eCCCCeEEeCCCcEEEEEEc-CCccccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEecCCCEEEEEE
Confidence 45778999999999999998 454 4688999996 43221 123467776532 47999
Q ss_pred cCCCCCCCeEEEEEEEecCceeeeEeEEEEEE----cCCeEEeCCCceEEeCCCeEEEEEEeccc-Cc-eEEEEEECCee
Q psy574 66 QDSRKTDDGRYQCVVKNVAGTRESTDAVLRVL----VKPYIIRGPKDTTVSASSIIVFECSVGGD-AV-LTVHWKRLGSA 139 (977)
Q Consensus 66 ~~v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V~----~~P~~~~~p~~~~v~~G~~v~l~C~v~g~-p~-~~i~W~k~~~~ 139 (977)
.+++.+|+|.|+|.+.|..+. ....+.|.|. .+|.+...+....+.+|+.++|.|.+.|. |. +.|.|+|++..
T Consensus 84 ~~v~~~D~G~Y~C~~~n~~~~-~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~ 162 (344)
T 1za6_B 84 SSLRSEDTAVYFCTRSLNMAY-WGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALT 162 (344)
T ss_dssp CSCCGGGCEEEEEEETTTTCE-ECCCEEEEECSSCCBCCEEEEECCSCTTTSSSEEEEEEEEEEEBSSCCCEEETTTTBC
T ss_pred CCCCcccCEEEEEEEecCcce-ecCcEEEEEecCCCCCCeEEEccccccccCCCcEEEEEEEeeEECCCeEEEEecCCcc
Confidence 999999999999999985433 2344678887 34555544434456799999999999876 65 79999999876
Q ss_pred CCC----------CceEEeccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEE------------------------E
Q psy574 140 MPE----------DRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLT------------------------V 185 (977)
Q Consensus 140 l~~----------~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~------------------------V 185 (977)
+.. +++. ....|.|.++..+| |.|+|.|.|..+.......+. +
T Consensus 163 ~~~~~~~~~~~~~~~~~--~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~ 239 (344)
T 1za6_B 163 SGVHTFPAVLQSSGLYS--LSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEPKSCDKTHTCPPCGGGSSGGGSGGQ 239 (344)
T ss_dssp TTEEECCCEECTTSCEE--EEEEEEEETTHHHH-BCEEEEEEEGGGTEEEEEEECCCCC--------------------C
T ss_pred CceeECCCeECCCCCEE--EEEEEEEcHHHcCC-CcEEEEEEeCCCCccceEeecccccccccccCCCCCCccccccCCC
Confidence 421 1111 22479999999888 999999999887533222221 2
Q ss_pred eeCCeEEecCCCcEEeeCCeEEEEEEEecC-C-CCeEEEEEcCeeeeecCCCccccEEEEEccCCc----eEEEEeeccc
Q psy574 186 QMAPIVRERPSDLRLEVGRDAVFLCGIEGS-P-PPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGM----NLLKIQNVSR 259 (977)
Q Consensus 186 ~~~p~~~~~p~~~~v~~G~~v~L~C~~~g~-p-~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~----s~L~I~~v~~ 259 (977)
..+|.+...+.......|..++|.|.+.|. | .+.+.|+|+|..+... .........+|. +.|.|.....
T Consensus 240 ~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~-----~~~~~~~~~~g~~~~~s~l~i~~~~~ 314 (344)
T 1za6_B 240 PREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNY-----KTTPPVLDSDGSFFLYSKLTVDKSRW 314 (344)
T ss_dssp CBCCEEEEECCCGGGGGSSSEEEEEEEEEEBSSCCEEEEESSSSCCCSE-----EECCCEECTTSCEEEEEEEEECHHHH
T ss_pred CcCCEEEEeCCChHhccCCcEEEEEEEeeEECCCeEEEEEECCeECCCc-----EecceEECCCCcEEEEEEEEEChHHc
Confidence 356766655443333356679999999985 4 3589999999876311 111111122232 3677777777
Q ss_pred CCCCeEEEEEEEcCCCce
Q psy574 260 TAAPLIILCLGVNAAGSD 277 (977)
Q Consensus 260 ~d~G~Y~~C~a~n~~g~~ 277 (977)
+|.|.|+ |.|.|.....
T Consensus 315 ~~~g~Yt-C~a~~~~l~~ 331 (344)
T 1za6_B 315 QQGNVFS-CSVMHEALHN 331 (344)
T ss_dssp HTTCEEE-EEEECTTSTT
T ss_pred cCCCeEE-EEEEcCCCCC
Confidence 8899999 9999987643
No 111
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A
Probab=99.91 E-value=1.7e-22 Score=222.74 Aligned_cols=281 Identities=14% Similarity=0.132 Sum_probs=198.6
Q ss_pred CeEEeCCCceeecCCCcEEEEEEEcc---CceEEEEECCEEcCCCCcEEEecCceEEEeccCCCCCeEEEEEEEcCCCce
Q psy574 294 PVILFGPANQTLPLRSEARLRCQVRG---EGSVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSA 370 (977)
Q Consensus 294 p~i~~~p~~~~v~~g~~~~L~C~~~~---~p~i~W~~~g~~l~~~~~~~~~~~~sl~I~~v~~~d~G~Y~C~a~n~~G~~ 370 (977)
+.+..++..+.+..|++++|.|.+.+ .+.|.|++++..+...........++|.|.++...|+|.|+|. ..|..
T Consensus 7 ~~~~~p~~~v~~~~G~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~---~~g~~ 83 (325)
T 1n26_A 7 PAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLLLRSVQLHDSGNYSCY---RAGRP 83 (325)
T ss_dssp CCCCCCTTEEEECTTCCEEEECTTSCTTCCSEEEEEEECSSSSCCCEEEEEESSEEEECSCCGGGCEEEEEE---SSSSC
T ss_pred CccccCCCcEECCCCCcEEEEeCCCCCCCCceEEEEECCccCCccccccccccceEEecccchhhCeEeEEE---eCCEE
Confidence 34455555666689999999999886 4689999988765322222234467899999999999999999 36777
Q ss_pred EEEEEEEEECCCCCCCcccCCCCCCCCCCCCCCCeEEe-eCCCceEEEEEcCCCCCCcccceEEEEEeecCCCCCCCCCC
Q psy574 371 SWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVN-QTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGD 449 (977)
Q Consensus 371 ~~s~~l~v~~~~~~~~~~~~~~~~~~~p~~P~~~~v~~-~~~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~ 449 (977)
...+.|.|.. +|++|. +.+.. ....++.|+|.++.+ ++ ....|.|+|+......
T Consensus 84 ~~~~~L~V~~----------------pP~~P~-l~c~~~~~~~~~~c~W~~~~~-~~-~~~~y~l~~~~~~~~~------ 138 (325)
T 1n26_A 84 AGTVHLLVDV----------------PPEEPQ-LSCFRKSPLSNVVCEWGPRST-PS-LTTKAVLLVRKFQNSP------ 138 (325)
T ss_dssp SCEEEEEECC----------------CCCCCC-CEEEBSSTTSCEEEEECCSSC-CC-TTCEEEEEEEEESSSS------
T ss_pred eeeEEEEecc----------------CCCCCc-eeEEeecCCCcEEEEECCCCC-CC-CCceEEEEEEEccCCC------
Confidence 8888998874 467777 66653 346689999998766 22 4578888775431100
Q ss_pred CCcccEEEeceecCcCeEEEEccCCCCeEEEEEEEEcCCCCCCCCCCCceEEeeccccccccccCCcceeecCCCCCCCc
Q psy574 450 TATATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRG 529 (977)
Q Consensus 450 ~~~~~w~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~G~s~~S~~s~~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~g 529 (977)
...| ...|....
T Consensus 139 --~~~~-----------------------~~~c~~~~------------------------------------------- 150 (325)
T 1n26_A 139 --AEDF-----------------------QEPCQYSQ------------------------------------------- 150 (325)
T ss_dssp --CEEE-----------------------EEEEEEET-------------------------------------------
T ss_pred --CCcc-----------------------cccCCCCC-------------------------------------------
Confidence 0000 00000000
Q ss_pred chHHHHhhcccccCCceEEEEEeeEeCCCeEEEEEEecCCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCC-
Q psy574 530 ESLRRARQHLQEGGGSLIELTEVKPMTSTSVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLA- 608 (977)
Q Consensus 530 ~~~~~~~~~l~~~~~~~~~~l~~~~~~~tsv~lsW~~p~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~- 608 (977)
.....++.|..|.
T Consensus 151 ------------------------------------------------------------------~~~~~~c~i~~~~~ 164 (325)
T 1n26_A 151 ------------------------------------------------------------------ESQKFSCQLAVPEG 164 (325)
T ss_dssp ------------------------------------------------------------------TTTEEEEEECCCTT
T ss_pred ------------------------------------------------------------------CCCCEEEEECCCcc
Confidence 0112445666665
Q ss_pred CCcEEEEEEEEeecceeCCCCCceEEeccCCCCCCCCceeEEEEecC--cEEEEEeeCCCCCCCCeeeeEEEEEEEecCC
Q psy574 609 HYSRYEFFLVPFFGSVDGKPSNLRAVRTLECEPSGVPQLTDPVLLNA--TSVLLKWKPPPVGTHNGVIRTYQIIVGGGNN 686 (977)
Q Consensus 609 p~t~Y~~~V~a~n~~g~g~~s~~~~~~T~~~~P~~~P~~v~~~~~~~--~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~ 686 (977)
+++.|.|+|.|.|..|.+. +....+.+...++++||.++++...+. +++.|+|++|.....++.+++|+|+|+..+.
T Consensus 165 ~~~~Y~f~v~A~N~~G~~~-s~~~~~~~~~~v~P~pP~~l~v~~~~~~~~sv~lsW~~p~~~~~~~~~~~Y~V~yr~~~~ 243 (325)
T 1n26_A 165 DSSFYIVSMCVASSVGSKF-SKTQTFQGCGILQPDPPANITVTAVARNPRWLSVTWQDPHSWNSSFYRLRFELRYRAERS 243 (325)
T ss_dssp CCCEEEEEEEEEETTEEEE-CCCEEEETTTCBCCCCCEEEEEEECTTCTTCEEEEEECCTTCCCSSSCEEEEEEEEETTC
T ss_pred cCcEEEEEEEEEcCCCCcc-cCcEEEeeccccCCCCCcceEEEEecCCCCEEEEEECCCCccCCCcEeEEEEEEEEeCCC
Confidence 7788999999999888873 445667666666667999999887653 5899999999644467789999999998765
Q ss_pred cceEEEEecCCcCeEEecCCCCCceEEEEEEEEcCCCcCCC---CCceEEeecC
Q psy574 687 SALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPY---SRPALLSLTS 737 (977)
Q Consensus 687 ~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~~G~g~~---S~~~~~~t~~ 737 (977)
..+....+....++++|.+|+|++.|.|+|+|+|..|.|.+ |+++..++..
T Consensus 244 ~~W~~~~~~~~~~~~~l~~L~p~t~Y~~rVrA~n~~g~G~~S~wS~~~~~~~~~ 297 (325)
T 1n26_A 244 KTFTTWMVKDLQHHCVIHDAWSGLRHVVQLRAQEEFGQGEWSEWSPEAMGTPWT 297 (325)
T ss_dssp SCCEEEECGGGCSEEEESSCCTTCCEEEEEEEEETTTBSCCCCCCCCEEECCCC
T ss_pred CCCEEEcccCCceEEEEeCCCCCCeEEEEEEEecCCCCCCCcCCCCccceecCC
Confidence 45555555566789999999999999999999999887665 5666665533
No 112
>3bpo_C Interleukin-13 receptor alpha-1 chain; IL4, IL13, IL4R, IL13R, cytokine, glycoprotein, IM response, membrane, phosphoprotein, secreted; HET: NAG; 3.00A {Homo sapiens} PDB: 3bpn_C*
Probab=99.91 E-value=8.5e-23 Score=223.97 Aligned_cols=281 Identities=12% Similarity=0.113 Sum_probs=191.1
Q ss_pred CCCCCCCeEEeeCCCceEEEEEcCCCCCCcccceEEEEEeecCCCCCCCCCCCCcccEEEeceecCcCeEEEEccCCCCe
Q psy574 398 PGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVGLT 477 (977)
Q Consensus 398 p~~P~~~~v~~~~~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~i~~L~p~t~ 477 (977)
..||.++++...+..++.|+|.+|....++.+.+|.+.+.. .|... .....+.+.+|.++..
T Consensus 4 ~~pP~nl~~~~~~~~~v~l~W~pP~~~~~~~~~~Y~v~~~~---------------~~~~~---~~~~~~~~~~~~~~~~ 65 (314)
T 3bpo_C 4 QPPVTNLSVSVENLCTVIWTWNPPEGASSNCSLWYFSHFGD---------------KQDKK---IAPETRRSIEVPLNER 65 (314)
T ss_dssp CCCCEEEEEEEETTTEEEEEEECCSSCCCSSCCCEEECCC-----------------CCCE---EESSSEEEEECCCSSC
T ss_pred CCCCcceEEEeCCceEEEEEEcCCCCCCCCceEEEEEEecc---------------cCceE---eccccEEEEEEcCCCc
Confidence 37899999998889999999999876445677889987743 11111 1134456788999999
Q ss_pred EEEEEEEEc-CCCCCCCCCCCceEEeeccccccccccCCcceeecCCCCCCCcchHHHHhhcccccCCceEEEEEeeEeC
Q psy574 478 YTFLVRALN-SHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPMT 556 (977)
Q Consensus 478 Y~~~V~a~n-~~G~s~~S~~s~~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~g~~~~~~~~~l~~~~~~~~~~l~~~~~~ 556 (977)
|.|+|+|.+ ..|.+.+|+....... .++.. ++.++.++++...+
T Consensus 66 y~~~V~a~~~~~~~g~~s~~~~~~~~---~~~~~--------------------------------pp~~P~~l~c~~~~ 110 (314)
T 3bpo_C 66 ICLQVGSQCSTNESEKPSILVEKCIS---PPEGD--------------------------------PESAVTELQCIWHN 110 (314)
T ss_dssp EEEEEEECC---------CCEEEEEC---CCCC---------------------------------CCSSCEEEEEEEET
T ss_pred EEEEEEEEecCCCCCCCCcCeeeeee---cCCCC--------------------------------CCCCCEeceEEECC
Confidence 999999964 5566666554332211 11110 13345889999999
Q ss_pred CCeEEEEEEec-CCCccceEEEEEEecCCCCCceEEE-EeecCccceEEECCCC----CCcEEEEEEEEeecceeCCCCC
Q psy574 557 STSVKLTWEIL-NTDYIEGVYIYSRGLDPPASVAMLT-VLHAGEASGFLVTGLA----HYSRYEFFLVPFFGSVDGKPSN 630 (977)
Q Consensus 557 ~tsv~lsW~~p-~~~~i~~Y~v~y~~~~~~~~~~~~~-~~~~~~~~~~~i~~L~----p~t~Y~~~V~a~n~~g~g~~s~ 630 (977)
.+++.|+|+++ ..+.+.+|.|+|+..+. ..+..+. .........+.+..+. .++.|.|+|.|.|..|.+..+
T Consensus 111 ~~~~~c~W~~~~~~~~~~~Y~l~y~~~~~-~~~~~C~~~~~~~~~~~c~~~~~~~~~~~~~~y~~~V~a~n~~G~~~~~- 188 (314)
T 3bpo_C 111 LSYMKCSWLPGRNTSPDTNYTLYYWHRSL-EKIHQCENIFREGQYFGCSFDLTKVKDSSFEQHSVQIMVKDNAGKIKPS- 188 (314)
T ss_dssp TTEEEEEEECCC---CCCCEEEEEEESSC-SSCEECCCEEEETTEEEEEEECCC--------CCEEEEEEETTSCSCCE-
T ss_pred CCeEEEEECCCCCCCCCccEEEEEEeCCC-CccccCcCeecCCCeEEEEECCCCccccceeEEEEEEEEEcCCCceecc-
Confidence 99999999999 44568999999987653 3333321 1112345678887776 488999999999998887544
Q ss_pred ceEEeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCcceEEEEe-------------cCC
Q psy574 631 LRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTV-------------SAS 697 (977)
Q Consensus 631 ~~~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~~~~~~~~-------------~~~ 697 (977)
...+.+.+.+.+.||.++++. ...+++.|+|++|. ..++.+++|+|+|+..+...+....+ ...
T Consensus 189 ~~~~~~~~~v~P~pP~~l~~~-~~~~~l~lsW~~P~--~~~~~~l~Yev~y~~~~~~~w~~~~~~~~~c~~~~~~~~~~~ 265 (314)
T 3bpo_C 189 FNIVPLTSRVKPDPPHIKNLS-FHNDDLYVQWENPQ--NFISRCLFYEVEVNNSQTETHNVFYVQEAKCENPEFERNVEN 265 (314)
T ss_dssp EEEECSSSSEECCCCEEEEEE-EETTEEEEEEECCT--TCCGGGEEEEEEEEC--CCCEEEEEESCCCCCCTTSSCCCSS
T ss_pred cEEEehhheEeeCCCCEEEEE-EcCCcEEEEEeCCC--ccCCceEEEEEEEEECCCCcceEEecccccccccccccccCC
Confidence 466666665544599999987 67789999999994 45666789999999866444433222 245
Q ss_pred cCeEEecCCCCCceEEEEEEEEcC------CC-cCCCCCceEEeec
Q psy574 698 TPTLLLTNLSAGIRYSVSLAATNR------AG-TGPYSRPALLSLT 736 (977)
Q Consensus 698 ~~~~~l~~L~p~t~Y~~~V~A~~~------~G-~g~~S~~~~~~t~ 736 (977)
.+++.|.+|+|++.|.|+|||.+. .| .|.||+++.+.+.
T Consensus 266 ~~~~~l~~L~p~t~Y~~qVra~~~~~~~~~~g~WS~WS~~~~~~~~ 311 (314)
T 3bpo_C 266 TSCFMVPGVLPDTLNTVRIRVKTNKLCYEDDKLWSNWSQEMSIGKK 311 (314)
T ss_dssp EEEEEEESCCTTSCEEEEEEEEECTTTSCCCCCCCCCCCCEEESCC
T ss_pred ceEEEEccCCCCCEEEEEEEeeecccccCCCCeeCCCCCCeEeccc
Confidence 678999999999999999999995 56 4889999988544
No 113
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Probab=99.91 E-value=2e-23 Score=211.86 Aligned_cols=177 Identities=25% Similarity=0.425 Sum_probs=153.4
Q ss_pred cccceecccceEEeCCCcEEEEEECCC-CCCCCeEEEEeCCEEeecCCCceEEEe--c--------CcEEEEcCCCCCCC
Q psy574 5 REEFRVQPKSQRVAAGDTALLECGPPR-GHPEPTLVWKKNGHPIDFENSKRLRLV--D--------GTNLAIQDSRKTDD 73 (977)
Q Consensus 5 ~~~~~~~p~~~~v~~G~~v~L~C~~~~-g~P~~~v~W~k~g~~l~~~~~~r~~~~--~--------~g~L~I~~v~~~D~ 73 (977)
.+.|...|.++.+.+|++++|.|.+ . +.|.+.|.|+|||..+......++.+. . ++.|.|.+++.+|+
T Consensus 2 ~~~~~~~p~~~~v~~G~~v~l~C~~-~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~ 80 (195)
T 2c5d_C 2 ESPFVGNPGNITGARGLTGTLRCQL-QVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDT 80 (195)
T ss_dssp CCSEEECCCCEEECTTCCEEEEEEE-EEESSCCCCEEEETTEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCSTTC
T ss_pred CCeeccChhheEEecCCcEEEeccc-ccCCCCcEEEEEECCEEcccCCCCceEEEEccccccceeeccEEEEEeccccCC
Confidence 4789999999999999999999999 5 889999999999999965433344433 3 35799999999999
Q ss_pred eEEEEEEEecCceeeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEecccCce-EEEEEECCeeCCCCceEEeccce
Q psy574 74 GRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVL-TVHWKRLGSAMPEDRMSVLPSRS 152 (977)
Q Consensus 74 G~Y~C~a~n~~g~~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~-~i~W~k~~~~l~~~~~~~~~~~~ 152 (977)
|.|+|.+.|..+...+..+.|.|..+|.+...|....+.+|+.+.|.|.+.|.|.+ .|.|+|++..+...... ..++.
T Consensus 81 G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~~-~~~~~ 159 (195)
T 2c5d_C 81 GQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGH-GPQRS 159 (195)
T ss_dssp EEEEEEEEETTEEEECCCEEEEECCSCEEEECCCCEEECTTCCEEEEEEEECSSCCCEEEEEESSCBSSSSTTS-SCCEE
T ss_pred cEEEEEEEeCCCceecccEEEEEecCCeEEcCCCcEEEcCCCEEEEEeECCCCCCCCEEEEEECCEeccCCCCc-CCCCe
Confidence 99999999988876677789999999999999999999999999999999999999 99999999988654322 45678
Q ss_pred EEEccCccCCCeEEEEEEEeCCeeEE-EEEEEEE
Q psy574 153 LQLSDVRLEDAGEYVCEAENAVGKIS-ASATLTV 185 (977)
Q Consensus 153 L~I~~v~~~D~G~Y~C~a~n~~g~~~-~~~~L~V 185 (977)
|.|.+++ |+|.|+|.|.|..|... ..+.|.|
T Consensus 160 L~i~~~~--d~G~Y~C~a~N~~g~~~s~~~~l~V 191 (195)
T 2c5d_C 160 LHVPGLN--KTSSFSCEAHNAKGVTTSRTATITV 191 (195)
T ss_dssp EEECCCS--SCEEEEEEEEETTEEEECCCEEEEE
T ss_pred EEEcccc--cCceEEEEEEcCCCceEEEEEEEEE
Confidence 9999997 89999999999999875 7888888
No 114
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A
Probab=99.91 E-value=6.2e-23 Score=211.25 Aligned_cols=184 Identities=30% Similarity=0.560 Sum_probs=156.4
Q ss_pred cccccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEe--cC--cEEEEcCCCC-CCCeEEE
Q psy574 3 LLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV--DG--TNLAIQDSRK-TDDGRYQ 77 (977)
Q Consensus 3 ~l~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~--~~--g~L~I~~v~~-~D~G~Y~ 77 (977)
.-.|.|...|.++.+.+|++++|.|.+ .+.|.+.|.|+|||..+. ....|+.+. .+ ..|.|.+++. +|+|.|+
T Consensus 4 ~~pP~~~~~p~~~~v~~G~~v~l~C~~-~g~p~~~v~W~~~~~~~~-~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~ 81 (212)
T 2yd1_A 4 AHPPEIIRKPQNQGVRVGGVASFYCAA-RGDPPPSIVWRKNGKKVS-GTQSRYTVLEQPGGISILRIEPVRAGRDDAPYE 81 (212)
T ss_dssp -CCCEEEECCCCEEEETTSCEEEEEEE-ECSSCCEEEEEETTEECC-TTSTTEEEEEETTTEEEEEESSCCTTTTCSEEE
T ss_pred CCCCEEEcCCCceEEecCCEEEEEEEE-ccCCCCeEEEEECCEECC-CCcceeEEEEcCCCeEEEEEEecCCCCcCceEE
Confidence 346889999999999999999999999 789999999999999995 334455543 34 3799999999 9999999
Q ss_pred EEEEecCceeeeEeEEEEEEcC-------CeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCC--CceEEe
Q psy574 78 CVVKNVAGTRESTDAVLRVLVK-------PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPE--DRMSVL 148 (977)
Q Consensus 78 C~a~n~~g~~~s~~~~l~V~~~-------P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~--~~~~~~ 148 (977)
|.+.|..|...+..+.|.|..+ |.+...+....+.+|+.+.|.|.+.|.|.+.|.|++++..+.. .++ ..
T Consensus 82 C~~~n~~g~~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~-~~ 160 (212)
T 2yd1_A 82 CVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRY-SL 160 (212)
T ss_dssp EEEECSSSCEEEEEEEEEEECTTCSCTTCCEEEECCCCEEEETTCCEEECCEEECSSCCEEEEEETTEECCTTSTTE-EE
T ss_pred EEEEeCCCCeEEeeEEEEEecccCCCCCCCeeEeCCCceEeecCCeEEEEEEeccCCCCeEEEEECCeEcccCCCeE-Ec
Confidence 9999998875677789999865 7888888888999999999999999999999999999998864 333 33
Q ss_pred ccceEEEccCccCCCeEEEEEEEeCCeeEEEE-EEEEEeeCC
Q psy574 149 PSRSLQLSDVRLEDAGEYVCEAENAVGKISAS-ATLTVQMAP 189 (977)
Q Consensus 149 ~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~-~~L~V~~~p 189 (977)
.++.|.|.++..+|+|.|+|.|.|..|..... +.|.|...+
T Consensus 161 ~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~s~~~~l~V~~~~ 202 (212)
T 2yd1_A 161 KDGFLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKVRR 202 (212)
T ss_dssp ETTEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC--
T ss_pred cCCeEEEccCChhhCEEEEEEeecCCCceeEEEEEEEEEecc
Confidence 56799999999999999999999999987654 889988543
No 115
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}
Probab=99.91 E-value=1.6e-23 Score=211.85 Aligned_cols=183 Identities=28% Similarity=0.468 Sum_probs=158.9
Q ss_pred cccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCc-EEEEcCCCCCCCeEEEEEEEec
Q psy574 5 REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGT-NLAIQDSRKTDDGRYQCVVKNV 83 (977)
Q Consensus 5 ~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g-~L~I~~v~~~D~G~Y~C~a~n~ 83 (977)
.|.|...|.++.+.+|++++|.|.+ .+.|.+.|.|+|+|..+.. ...|+.+..++ .|.|.+++.+|+|.|+|.+.|.
T Consensus 7 ~P~i~~~~~~~~~~~G~~v~l~C~~-~~~p~~~i~W~~~~~~~~~-~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 84 (192)
T 2iep_A 7 APVITTPLETVDALVEEVATFMCAV-ESYPQPEISWTRNKILIKL-FDTRYSIRENGQLLTILSVEDSDDGIYCCTANNG 84 (192)
T ss_dssp EEEESSCCCEEEEETTSCEEEECCE-EEESCCEEEEEETTEECCT-TCTTEEEEGGGTEEEESSCCGGGCEEEEEEEECS
T ss_pred CceeecCccceeeeCCCcEEEEeeC-CCCCCCeEEEEECCEEccc-cCccEEEcCCccEEEEcCCCcccCeEEEEEEEcC
Confidence 4677888888999999999999998 7888999999999999843 34577766554 6999999999999999999998
Q ss_pred CceeeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCC-CceEEeccceEEEccCccCC
Q psy574 84 AGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPE-DRMSVLPSRSLQLSDVRLED 162 (977)
Q Consensus 84 ~g~~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~-~~~~~~~~~~L~I~~v~~~D 162 (977)
.|...+..+.|.|..+|.+...+....+.+|+.+.|.|.+.|.|.+.+.|++++..+.. .++.+..++.|.|.++..+|
T Consensus 85 ~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d 164 (192)
T 2iep_A 85 VGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESGSLRIHNVQKED 164 (192)
T ss_dssp SSCCEEEEEEEEEEEEEEEEECCCCEEEETTSCEEECCEEEEESCCEEEEEETTEECCCCSSEEECTTSCEEESSCCGGG
T ss_pred CCceeEeEEEEEEEeCCccccCCcceEEeCCCcEEEEEEEeccCCceEEEEeCCEEccCCCcEEEecCCcEEEecCChhh
Confidence 88766677889999999999999899999999999999999999999999999998865 45566677899999999999
Q ss_pred CeEEEEEEEeCCeeE-EEEEEEEEeeCC
Q psy574 163 AGEYVCEAENAVGKI-SASATLTVQMAP 189 (977)
Q Consensus 163 ~G~Y~C~a~n~~g~~-~~~~~L~V~~~p 189 (977)
+|.|+|.|.|..|.. +..+.|.|..+|
T Consensus 165 ~G~Y~C~a~n~~g~~~s~~~~l~V~~pp 192 (192)
T 2iep_A 165 AGQYRCVAKNSLGTAYSKLVKLEVEVFA 192 (192)
T ss_dssp CEEEEEEEEETTEEEECCCEEEEEEC--
T ss_pred CEEEEEEEEcCCCcEEEEEEEEEEEeCC
Confidence 999999999999986 456888888665
No 116
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}
Probab=99.91 E-value=1.6e-23 Score=227.03 Aligned_cols=258 Identities=17% Similarity=0.179 Sum_probs=181.3
Q ss_pred CeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceEEec----cceEEEccCccCCCeEEEEEEEeCCe
Q psy574 100 PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLP----SRSLQLSDVRLEDAGEYVCEAENAVG 175 (977)
Q Consensus 100 P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~~----~~~L~I~~v~~~D~G~Y~C~a~n~~g 175 (977)
|.+.....+..+.+|+++.|.|.+.|. |.|+|++..+.. +..... .+.|.|.+++.+|+|.|+|.|.|..|
T Consensus 1 P~i~~~~~~~~v~~G~~v~L~C~~~~~----v~W~~~~~~~~~-~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g 75 (289)
T 3mjg_X 1 LVVTPPGPELVLNVSSTFVLTCSGSAP----VVWERMSQEPPQ-EMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHNDSRG 75 (289)
T ss_dssp CCBCSSCSEEECCTTCCEEEEEEESSC----CEEEBTTBCCSE-EEEECTTSCEEEEEEECSCCGGGCEEEEEECCC---
T ss_pred CeecCCCCeEEEeCCCcEEEEEeccce----EEEECCCCCccc-ceeccCCCceeEEEEEccCChhhCEEEEEEEcccCC
Confidence 334445556788999999999999874 999999988742 233322 25899999999999999999999887
Q ss_pred e---EEEEEEEEEeeCCeEEecCC-C---cEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCccccEEEEEccCC
Q psy574 176 K---ISASATLTVQMAPIVRERPS-D---LRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDG 248 (977)
Q Consensus 176 ~---~~~~~~L~V~~~p~~~~~p~-~---~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g 248 (977)
. ....+.|.|..+........ . ..+.+|+.+.|.|.+. .|.+.+.|++++....+. ..+ ....+
T Consensus 76 ~~~~~~~~~~v~v~~p~~~~~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~w~~~~~~~~~~-----~~~---~~~~~ 146 (289)
T 3mjg_X 76 LETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVT-DPQLVVTLHEKKGDVALP-----VPY---DHQRG 146 (289)
T ss_dssp ---CCCEEEEEECCCTTCCBCCCCHHHHEEEESSCCCEEECCCBS-CTTSCEEEEESSCCSCCC-----CCE---ETTTE
T ss_pred CCcCcEEeEEEEEECCCcCcccCCCCcceEEeecCCeEEEEeEcC-CCCceEEEEeCCCCCccc-----eee---cCCcC
Confidence 6 34555666654433222111 1 5688999999999998 778899999876332211 000 10011
Q ss_pred ceEEEEeecccCCCCeEEEEEEEcCCCceeE-EEEEEEECCCCCCCCeEEeCCCceeecCCCcEEEEEEEcc--CceEEE
Q psy574 249 MNLLKIQNVSRTAAPLIILCLGVNAAGSDLA-RASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG--EGSVQW 325 (977)
Q Consensus 249 ~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~-~~~l~V~~~~~~~pp~i~~~p~~~~v~~g~~~~L~C~~~~--~p~i~W 325 (977)
.+ ...|+|.|+ |.|.|..+.... ...|.|... .+|.+...+....+..|+.+.|.|.+.+ .+.+.|
T Consensus 147 --~~-----~~~d~G~Y~-C~a~n~~~~~~s~~~~l~v~~~---~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~v~W 215 (289)
T 3mjg_X 147 --FS-----GIFEDRSYI-CKTTIGDREVDSDAYYVYRLQV---SSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEW 215 (289)
T ss_dssp --EE-----ECCCSSEEE-EEEEETTEEEECCCEEEEECCC---CCCCCEEEESCSEEETTSCEEEEEEEESCSSBEEEE
T ss_pred --ee-----eeccCcEEE-EEEEeCCceeeeeeEEEEecCC---CCCCcEEeCCcceeEcCCCEEEEEEECCCCCcceEE
Confidence 11 357999999 999987665433 345666543 3555566666678999999999999998 678999
Q ss_pred EECCEEcCCCC-cEEEe-------cCceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEECCC
Q psy574 326 WRGEREVGSGP-RVNVT-------GDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPT 382 (977)
Q Consensus 326 ~~~g~~l~~~~-~~~~~-------~~~sl~I~~v~~~d~G~Y~C~a~n~~G~~~~s~~l~v~~~~ 382 (977)
++++....... ..... ..++|.|.++...|+|.|+|.|.|..|....++.|.|...+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~~~ 280 (289)
T 3mjg_X 216 TYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINITVVE 280 (289)
T ss_dssp ECTTSSSSCCCCCEEEESCTTTTEEEEEEEESSCCSSCCEEEEEEEEETTTTEEEEEEEEEEEEC
T ss_pred EcCCccCCCcccccccccCCcceEEEEEEEEcccChhhCcEEEEEeecCCCCceeEEEEEEEEEe
Confidence 98876543321 11111 22579999999999999999999999999999999998543
No 117
>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A
Probab=99.91 E-value=1.9e-24 Score=238.46 Aligned_cols=264 Identities=15% Similarity=0.167 Sum_probs=173.1
Q ss_pred cccceecccceEEeCC--CcEEEEEECCCCCC-CCeEEEEeCCEEeecCCCceEEEecCc------EEEEcCCCCCCCeE
Q psy574 5 REEFRVQPKSQRVAAG--DTALLECGPPRGHP-EPTLVWKKNGHPIDFENSKRLRLVDGT------NLAIQDSRKTDDGR 75 (977)
Q Consensus 5 ~~~~~~~p~~~~v~~G--~~v~L~C~~~~g~P-~~~v~W~k~g~~l~~~~~~r~~~~~~g------~L~I~~v~~~D~G~ 75 (977)
.|.+.+.|.......| ++++|.|.+....| .+.|.|+|||+.+............+| .|.|.+++.+|+|.
T Consensus 7 ~P~v~~~~~~~~~~~~~~~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~ 86 (323)
T 2wqr_A 7 PPTVKILQSSCDGGGHFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDRT 86 (323)
T ss_dssp CCCCEEEEECCCTTSCCCSEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTCC
T ss_pred CCEEEEeCCChHHhccCCCcEEEEEEEeCeECCCeEEEEEECCEEcccceecCCcCccCCcEEEEEEEEEcHHHcCCCCc
Confidence 4566665544444445 69999999933345 479999999999853321111111133 57888888889999
Q ss_pred EEEEEEecCceeeeEeEEEE---EEcCC-eEEeCCCceEEeCCCeEEEEEEeccc-Cce---EEEEEECCe-eCCCCceE
Q psy574 76 YQCVVKNVAGTRESTDAVLR---VLVKP-YIIRGPKDTTVSASSIIVFECSVGGD-AVL---TVHWKRLGS-AMPEDRMS 146 (977)
Q Consensus 76 Y~C~a~n~~g~~~s~~~~l~---V~~~P-~~~~~p~~~~v~~G~~v~l~C~v~g~-p~~---~i~W~k~~~-~l~~~~~~ 146 (977)
|+|+|.|..+... ..+.+. +...| .+...|....+.+|++++|.|.+.|. |.+ .|.|+|+++ .+......
T Consensus 87 Y~C~a~n~~~~~~-~~~~~~~~~~~~~p~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~p~~~~i~W~k~~g~~~~~~~~~ 165 (323)
T 2wqr_A 87 YTCQVTYQGHTFE-DSTKKCADSNPRGVSAYLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHSTRK 165 (323)
T ss_dssp EEEEEEETTEEEE-EEECCCCCSSGGGCEEEECCCCHHHHHTSSCCEEEEEEEEECCCSSCCEEEEEETTCCCCCCCCCE
T ss_pred EEEEEEeCCCCcc-eeeecCCCCCCCCCEEEEcCCCHHHhccCCeEEEEEEEeccCCCCCceEEEEEECCCcccccccCC
Confidence 9999999866432 222110 11234 34555666678899999999999775 555 899999754 33221111
Q ss_pred --------EeccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEE----EeeCCeEEecCCCcEEeeCCeEEEEEEEec
Q psy574 147 --------VLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLT----VQMAPIVRERPSDLRLEVGRDAVFLCGIEG 214 (977)
Q Consensus 147 --------~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~----V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g 214 (977)
+...+.|.|.+++.+|+|.|+|.|.|..+.......+. +..+|.+...+.......|+.++|.|.+.|
T Consensus 166 ~~~~~~g~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~l~C~~~g 245 (323)
T 2wqr_A 166 EEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPHLPRALMRSTTKTSGPRAAPEVYAFATPEWPGSRDKRTLACLIQN 245 (323)
T ss_dssp EEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSSSCEEEEECCCCSCCBCCEEEEEECCCCTTCTTEEEEEEEEEE
T ss_pred CccCCCCCEEEEEEEEECHHHccCCCCEEEEEECCCCCCCeeeEEEccCCCCCCCEEEEeCCChHHhcCCcEEEEEEeee
Confidence 11234799999999999999999999864322222332 225676655433322223999999999988
Q ss_pred -CCCC-eEEEEEcCeeeeecCC-------CccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCc
Q psy574 215 -SPPP-STFWMLEGNRSLIYPG-------DRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGS 276 (977)
Q Consensus 215 -~p~~-~i~W~~~g~~~~~~~~-------~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~ 276 (977)
.|.+ .+.|+|+|..+..... ...+.+... +.|.|..++.+|.|.|+ |.|.|....
T Consensus 246 ~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~------s~L~i~~~~~~d~g~Y~-C~a~n~~~~ 309 (323)
T 2wqr_A 246 FMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVF------SRLEVTRAEWEQKDEFI-CRAVHEAAS 309 (323)
T ss_dssp EBSSCCEEEEEETTEECCGGGEEECCCEECSSSSEEEE------EEEEEEHHHHHHCCCEE-EEEECTTST
T ss_pred eeCCCcEEEEEECCEECCCCceeecCcccCCCCcEEEE------EEEEEChHHccCCCEEE-EEEEeCCCC
Confidence 4443 7999999987632100 001122221 38999999999999999 999999876
No 118
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}
Probab=99.91 E-value=4.4e-23 Score=207.87 Aligned_cols=181 Identities=25% Similarity=0.443 Sum_probs=152.1
Q ss_pred cccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecC
Q psy574 5 REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVA 84 (977)
Q Consensus 5 ~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~ 84 (977)
++.|...|.++.+.+|++++|.|.+ .+.|.+.+.|+|++..+......|+.+..+++|.|.+++.+|+|.|+|.+.+..
T Consensus 2 ~~~~~~~~~~~~v~~G~~v~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 80 (189)
T 2v5t_A 2 MLTFREVVSPQEFKQGEDAEVVCRV-SSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEA 80 (189)
T ss_dssp CCEEEECCSSEEEETTSCEEECCEE-ECSSCCEEEEEC-----CBCCCTTEEECTTSCEEETTCCGGGCEEEEEEEEETT
T ss_pred CceeeccCCCEEEeCCCcEEEEEEE-cCCCCCEEEEEECCccceeccCCeEEEecCCCEEEeeCCHhHCcEEEEEEEEcC
Confidence 4678899999999999999999999 788999999999999987667788888888999999999999999999999887
Q ss_pred -ceeeeEeEEEEEEcCCeEEeCCC--ceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCC-ceEEe-ccceEEEccCc
Q psy574 85 -GTRESTDAVLRVLVKPYIIRGPK--DTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED-RMSVL-PSRSLQLSDVR 159 (977)
Q Consensus 85 -g~~~s~~~~l~V~~~P~~~~~p~--~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~-~~~~~-~~~~L~I~~v~ 159 (977)
+......+.|.|..+|.+...+. ...+.+|+.+.|.|.+.|.|.+.+.|++++..+... ++.+. .+..|.|.++.
T Consensus 81 ~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~L~i~~~~ 160 (189)
T 2v5t_A 81 RGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNII 160 (189)
T ss_dssp TTEEEEEEEEEEEEEEEEEECSCCEEEEETTSCCCEEEECEEEEESCCEEEEEETTEECCCSSSEEEETTTTEEEECSCC
T ss_pred CCceEEEEEEEEecCCCCcccccccccccccCCCcEEEEEEEccCCCCeEEEEECCEECcCCCcEEEecCCCEEEEcCCC
Confidence 44445667888888888776655 457788999999999999999999999999988754 33333 35689999999
Q ss_pred cCCCeEEEEEEEeCCeeEEEEEEEEEe
Q psy574 160 LEDAGEYVCEAENAVGKISASATLTVQ 186 (977)
Q Consensus 160 ~~D~G~Y~C~a~n~~g~~~~~~~L~V~ 186 (977)
.+|+|.|+|.|.|..|.....+.|.|.
T Consensus 161 ~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 187 (189)
T 2v5t_A 161 NSDGGPYVCRATNKAGEDEKQAFLQVF 187 (189)
T ss_dssp GGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred hhhCeeEEEEEEeCCCceeEEEEEEEE
Confidence 999999999999999998888888875
No 119
>2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor; 2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A 1lwr_A
Probab=99.91 E-value=7.9e-23 Score=209.99 Aligned_cols=189 Identities=16% Similarity=0.158 Sum_probs=157.2
Q ss_pred CceEEEEEeeEeCCCeEEEEEEec--CCC-ccceEEEEEEecCCCCCceEEEEee--cCccceEEECCCCCCcEEEEEEE
Q psy574 544 GSLIELTEVKPMTSTSVKLTWEIL--NTD-YIEGVYIYSRGLDPPASVAMLTVLH--AGEASGFLVTGLAHYSRYEFFLV 618 (977)
Q Consensus 544 ~~~~~~l~~~~~~~tsv~lsW~~p--~~~-~i~~Y~v~y~~~~~~~~~~~~~~~~--~~~~~~~~i~~L~p~t~Y~~~V~ 618 (977)
+.+|.++++...+. ++.|+|++| .++ .+.+|.|+|+..+ ...|....... ....++++|.+|+|++.|.|+|+
T Consensus 9 P~~P~~~~~~~~~~-s~~l~W~~p~~~~g~~i~~Y~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~ 86 (209)
T 2vkw_A 9 PSSPSIDQVEPYSS-TAQVQFDEPEATGGVPILKYKAEWRAVG-EEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLA 86 (209)
T ss_dssp CCCCEEEEEEECSS-CEEEEEECCSCCCSSCCCEEEEEEEESS-CCCCEEEEEEHHHHHHHSEEEECCCCTTCEEEEEEE
T ss_pred CcCCcccEeeeccC-eEEEEEcCCCcCCCcceeEEEEEEeeCC-CCCceEeEeeccCCCccceEEeCCCCCCCeEEEEEE
Confidence 44468899988888 689999999 344 5999999999876 46676554422 13456899999999999999999
Q ss_pred EeecceeCCCCCceEEeccCC-CCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCcceEEEEecCC
Q psy574 619 PFFGSVDGKPSNLRAVRTLEC-EPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSAS 697 (977)
Q Consensus 619 a~n~~g~g~~s~~~~~~T~~~-~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~~~~~~~~~~~ 697 (977)
|.|..|.|.++..+.++|.+. +|. +|.++.+...+.++|.|+|++| ...+|.|.+|.|+|+..+........+.++
T Consensus 87 A~n~~G~~~~s~~~~~~T~~~~~P~-~P~~~~~~~~~~~sv~l~W~~p--~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~ 163 (209)
T 2vkw_A 87 ALNGKGLGEISAASEFKTQPVREPS-APKLEGQMGEDGNSIKVNLIKQ--DDGGSPIRHYLVRYRALSSEWKPEIRLPSG 163 (209)
T ss_dssp EEETTEECCCCCCEEEECCCSCSCC-CCEEEEEECTTSSCEEEEEECC--CCTTSCCCEEEEEEEETTSCCCCCEEECTT
T ss_pred EEcCCcccCCcccccccccCCCCCC-CCcccccccccCCeEEEEEECc--ccCCCCCceEEEEEECCCCCCceeeecCCC
Confidence 999999999999999999887 565 7788888888899999999998 788999999999999843444444566777
Q ss_pred cCeEEecCCCCCceEEEEEEEEcCCCcCCCCCceEEeecC
Q psy574 698 TPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTS 737 (977)
Q Consensus 698 ~~~~~l~~L~p~t~Y~~~V~A~~~~G~g~~S~~~~~~t~~ 737 (977)
.++++|.+|+|++.|.|+|+|+|.+|.|++|+++.+++..
T Consensus 164 ~~~~~i~~L~p~t~Y~~~V~A~n~~G~s~~S~~~~~~~~~ 203 (209)
T 2vkw_A 164 SDHVMLKSLDWNAEYEVYVVAENQQGKSKAAHFVFRTAAA 203 (209)
T ss_dssp CCEEEECSCCTTCEEEEEEEEEETTEECCCEEEEEECC--
T ss_pred ccEEEecCCCCCCEEEEEEEEEeCCccCCcchhhhhhhhh
Confidence 8899999999999999999999999999999988887654
No 120
>3se4_A Interferon alpha/beta receptor 1; type I interferon signaling complex, extracellular space, IM system receptor; HET: NAG; 3.50A {Homo sapiens} PDB: 3se3_A*
Probab=99.90 E-value=3.6e-23 Score=236.07 Aligned_cols=275 Identities=12% Similarity=0.100 Sum_probs=185.6
Q ss_pred CCCCCCCeEEeeCCCceEEEEEcCCCCCCcccceEEEEEeecCCCCCCCCCCCCcccEEEec--eecCcC--eEEEEccC
Q psy574 398 PGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVA--TNVPSP--ILTVTNLT 473 (977)
Q Consensus 398 p~~P~~~~v~~~~~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~--~~~~~~--~~~i~~L~ 473 (977)
..+|.++++...+ .++.|+|.++.+ .++.+. |.|+|+..... .|.... ...... .++..+|.
T Consensus 8 l~~P~nv~~~~~~-~~~~L~W~p~~~-~~~~i~-Y~V~y~~~~~~-----------~W~~~~~c~~~~~~~~~~t~~~l~ 73 (414)
T 3se4_A 8 LKSPQKVEVDIID-DNFILRWNRSDE-SVGNVT-FSFDYQKTGMD-----------NWIKLSGCQNITSTKCNFSSLKLN 73 (414)
T ss_dssp ---CCCCCEEEET-TEEEEC-----------CE-EEEEEEESSCC-----------CCEEEEEEEEESCSCEECCSSCCC
T ss_pred CCCCceeEEEEEC-CceEEEEcCCCC-CCCCeE-EEEEEEECCCC-----------CcEECcCccCCCCCEEECCccccc
Confidence 5678999988875 468999999987 455666 99999976433 686431 233333 44555789
Q ss_pred CCCeEEEEEEEEcCCCCCCCCCCCceEEeeccccccccccCCcceeecCCCCCCCcchHHHHhhcccccCCceEEEEEee
Q psy574 474 VGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVK 553 (977)
Q Consensus 474 p~t~Y~~~V~a~n~~G~s~~S~~s~~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~g~~~~~~~~~l~~~~~~~~~~l~~~ 553 (977)
|++.|.|+|+|.| .|.|.++.... +....... ..|| . +.+.
T Consensus 74 ~~~~Y~~rV~A~n-~~~S~~s~~~~-~~~~~~~~------------~~pP------------------------~-v~~~ 114 (414)
T 3se4_A 74 VYEEIKLRIRAEK-ENTSSWYEVDS-FTPFRKAQ------------IGPP------------------------E-VHLE 114 (414)
T ss_dssp TTSCEEEEEEEEE-TTEEEEEECCC-BCHHHHCC------------CCCC------------------------E-EEEE
T ss_pred CCCcEEEEEEEee-CCcCCCEecCc-eeecccce------------eCCC------------------------e-EEEE
Confidence 9999999999999 44443322111 00000000 0011 1 4555
Q ss_pred EeCCCeEEEEEEec--CC-------CccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeec--
Q psy574 554 PMTSTSVKLTWEIL--NT-------DYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFG-- 622 (977)
Q Consensus 554 ~~~~tsv~lsW~~p--~~-------~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~-- 622 (977)
... ++|.|+|+ | .+ +.+.+|+|.|++.+....+. +. ....++.|.+|.|++.|.|+|+|+|.
T Consensus 115 ~~~-~si~v~w~-P~~~~g~~~~~~~~~~~Y~v~y~~~~~~~~~~---~~--~~~~~~~i~~L~p~t~Y~~~V~A~n~~~ 187 (414)
T 3se4_A 115 AED-KAIVIHIS-PGTKDSVMWALDGLSFTYSLVIWKNSSGVEER---IE--NIYSRHKIYKLSPETTYCLKVKAALLTS 187 (414)
T ss_dssp ECS-SCEEEEEE-CSSSSCTTTGGGGSSCEEEEEEEETTTCCEEE---EE--EECSEEEECCCCTTCEEEEEEEEECTTT
T ss_pred EcC-CEEEEEEE-cCCCCCceeeeecCcEEEEEEEEECCCCceEE---Ee--cCCcEEEEcCCCCCCeEEEEEEEEeccC
Confidence 544 58999999 6 32 35679999999987543332 11 34578999999999999999999994
Q ss_pred ceeCCCCCceEEeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEec--------CCcceEEEE-
Q psy574 623 SVDGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGG--------NNSALINMT- 693 (977)
Q Consensus 623 ~g~g~~s~~~~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~--------~~~~~~~~~- 693 (977)
.|.|+.|..+.+.|.+++|..+|.++++...+ +++.|+|++|. + ..+|.|+|+.. +...+....
T Consensus 188 ~g~g~~S~~~~~~t~~~~~~~~P~~v~~~~~~-~~~~l~W~pp~-----~-~~~Y~v~y~~~~~~~~~~~~~~~w~~~~~ 260 (414)
T 3se4_A 188 WKIGVYSPVHCIKTTVENELPPPENIEVSVQN-QNYVLKWDYTY-----A-NMTFQVQWLHAFLKRNPGNHLYKWKQIPD 260 (414)
T ss_dssp CCEEEECCCEEEECCSCCSSCCCEEEEEEEET-TEEEEEEECSS-----S-SCEEEEEEEESGGGSCCCC--CCCCBCST
T ss_pred CCCCccCcccccccccccccCCCCccEEEEec-CCeEEEECCCC-----C-CeEEEEEEEehhccccccccccCceECCC
Confidence 68888898889999988888899999988765 67999999973 1 23999999863 112222111
Q ss_pred -ecCCcCeEEec-CCCCCceEEEEEEEEcCCCcCCCCCceEEeecCCC
Q psy574 694 -VSASTPTLLLT-NLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGP 739 (977)
Q Consensus 694 -~~~~~~~~~l~-~L~p~t~Y~~~V~A~~~~G~g~~S~~~~~~t~~~~ 739 (977)
.....+.+.+. +|.+++.|.|+|+|+|..|.|++|+...|.+....
T Consensus 261 ~~~~~~~~~~~t~~l~~~~~Y~~rV~A~n~~g~s~~s~~~~~~t~~~~ 308 (414)
T 3se4_A 261 CENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFWSEEIKFDTEIQA 308 (414)
T ss_dssp TTTBSSSEEEEEGGGSCSSEEEEEEEEECSSSEEEECCCEEEETTCC-
T ss_pred ccCCCCCEEcCCcccccCccEEEEEEEecCCCcccccccccccchhcc
Confidence 11235677776 69999999999999999999999999999877654
No 121
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4
Probab=99.90 E-value=7.1e-23 Score=205.12 Aligned_cols=176 Identities=24% Similarity=0.389 Sum_probs=147.3
Q ss_pred cccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEec---CcEEEEcCCCCCCCeEEEEEEE
Q psy574 5 REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD---GTNLAIQDSRKTDDGRYQCVVK 81 (977)
Q Consensus 5 ~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~---~g~L~I~~v~~~D~G~Y~C~a~ 81 (977)
++.|...|.++.+.+|++++|.|.+ .+.|.+.|.|+|+|..+......++.... .+.|.|.+++.+|+|.|+|.+.
T Consensus 2 ~~~~~~~p~~~~v~~G~~v~l~C~~-~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 80 (182)
T 1rhf_A 2 GLKLMGAPVKLTVSQGQPVKLNCSV-EGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVE 80 (182)
T ss_dssp -----CCCEEEEEETTCCEEEEEEE-ESCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEES
T ss_pred CCEEEeCCcceEEeCCCcEEEEEEE-eCCCCCeEEEEECCeecCCCCceEEEecCCCceEEEEEeecCcccCeEEEEEEE
Confidence 4678899999999999999999999 67899999999999999544333333332 2579999999999999999999
Q ss_pred ecCceeeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEecccCce-EEEEEECCeeCCCCceEEeccceEEEccCcc
Q psy574 82 NVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVL-TVHWKRLGSAMPEDRMSVLPSRSLQLSDVRL 160 (977)
Q Consensus 82 n~~g~~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~-~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~ 160 (977)
|..+...+..+.|.|..+|.+...+....+.+|+.+.|.|.+.|.|.+ .+.|++++..+..... ....|.|.++
T Consensus 81 ~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~---~~~~L~i~~~-- 155 (182)
T 1rhf_A 81 DGGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAP---SPSVLNVTGV-- 155 (182)
T ss_dssp SCTTCEECCCEEEEEECSCEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSEE---SSEEEEECCC--
T ss_pred cCCCcEEEEEEEEEEecCCeEEecCcceEecCCCEEEEEeEecCCCCCCEEEEEcCCeECCCCCC---CceEEEEecc--
Confidence 987766777889999999999999999999999999999999999999 9999999998865432 6678999998
Q ss_pred CCCeEEEEEEEeCCeeEE-EEEEEEEe
Q psy574 161 EDAGEYVCEAENAVGKIS-ASATLTVQ 186 (977)
Q Consensus 161 ~D~G~Y~C~a~n~~g~~~-~~~~L~V~ 186 (977)
+|+|.|+|.|.|..|... ..+.|.|.
T Consensus 156 ~d~G~Y~C~a~N~~g~~~s~~~~l~Vk 182 (182)
T 1rhf_A 156 TQSTMFSCEAHNLKGLASSRTATVHLQ 182 (182)
T ss_dssp SSCEEEEEEEEETTEEEECCCEEEEEC
T ss_pred ccCeEEEEEEECCCCCcccceEEEEeC
Confidence 599999999999999865 47777763
No 122
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A
Probab=99.90 E-value=1.5e-22 Score=204.52 Aligned_cols=178 Identities=23% Similarity=0.443 Sum_probs=151.3
Q ss_pred ccceecccceEEeCCCcEEEEEECCCCCC-CCeEEEEe-CCEEeecCCCceEEEe----cCcEEEEcCCCCCCCeEEEEE
Q psy574 6 EEFRVQPKSQRVAAGDTALLECGPPRGHP-EPTLVWKK-NGHPIDFENSKRLRLV----DGTNLAIQDSRKTDDGRYQCV 79 (977)
Q Consensus 6 ~~~~~~p~~~~v~~G~~v~L~C~~~~g~P-~~~v~W~k-~g~~l~~~~~~r~~~~----~~g~L~I~~v~~~D~G~Y~C~ 79 (977)
..|.+.|.++.+.+|++++|.|.+ .+.| .+.|.|+| ||+.+.. ...++.+. .++.|.|.+++.+|+|.|+|.
T Consensus 3 ~~v~~~p~~~~v~~G~~v~l~C~~-~~~~~~~~v~W~~~~g~~~~~-~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 80 (191)
T 1epf_A 3 LQVDIVPSQGEISVGESKFFLCQV-AGDAKDKDISWFSPNGEKLSP-NQQRISVVWNDDDSSTLTIYNANIDDAGIYKCV 80 (191)
T ss_dssp CCEEEESSSEEEETTCCEEEEEEE-CCCSCCCEEEEECTTSCEECC-BSSSEEEEEEETTEEEEEECSCCGGGCEEEEEE
T ss_pred eEEEecCCCcEEcCCCCEEEEEEC-CCCCCCceEEEEeCCCccccC-CCCeEEEEECCCCceEEEEccCCcccCEEEEEE
Confidence 568889999999999999999999 5555 88999999 9998853 34466553 246799999999999999999
Q ss_pred EEecCceeeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCC---CCceEEeccceEEEc
Q psy574 80 VKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMP---EDRMSVLPSRSLQLS 156 (977)
Q Consensus 80 a~n~~g~~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~---~~~~~~~~~~~L~I~ 156 (977)
+.+..+...+..+.|.|..+|.+...|....+.+|+++.|.|.+.|.|.+.+.|++++..+. ..++....++.|.|.
T Consensus 81 ~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~ 160 (191)
T 1epf_A 81 VTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIR 160 (191)
T ss_dssp EEETTTEEEEEEEEEEEECCSEEEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEECTTSCEEET
T ss_pred EEcCCCcceEEEEEEEeecCceEecCCCcEeecCCCeEEEEEEECCCCCCEEEEEECCEEeeccCCceEEEecCCeEEEC
Confidence 99998666677889999999999999999999999999999999999999999999999874 346666677899999
Q ss_pred cCccCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy574 157 DVRLEDAGEYVCEAENAVGKISASATLTV 185 (977)
Q Consensus 157 ~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V 185 (977)
++..+|+|.|+|.|.|..+.......+.|
T Consensus 161 ~~~~~d~G~Y~C~a~n~~~~~~~~~~i~v 189 (191)
T 1epf_A 161 GIKKTDEGTYRCEGRILARGEINFKDIQV 189 (191)
T ss_dssp TCCGGGCEEEEEEEEEGGGTEEEEEEEEE
T ss_pred CCChhhCEEEEEEEEEecceeEEEEEEEE
Confidence 99999999999999998865444444433
No 123
>3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma, epidermolysis bullosa, alternative splicing, disease mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A
Probab=99.90 E-value=8.4e-23 Score=213.80 Aligned_cols=189 Identities=21% Similarity=0.245 Sum_probs=157.2
Q ss_pred CceEEEEEeeEeCCCeEEEEEEecCCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeecc
Q psy574 544 GSLIELTEVKPMTSTSVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGS 623 (977)
Q Consensus 544 ~~~~~~l~~~~~~~tsv~lsW~~p~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~ 623 (977)
+.+|.++++...+.++|.|+|++| ++.+.+|.|+|+..+... +...... ...+++.|.+|+|++.|.|+|+|+|..
T Consensus 6 ~~~P~~l~~~~~~~~si~l~W~~p-~g~i~~Y~v~~~~~~~~~-~~~~~~~--~~~~~~~i~~L~p~t~Y~~~V~A~n~~ 81 (234)
T 3f7q_A 6 LGAPQNPNAKAAGSRKIHFNWLPP-SGKPMGYRVKYWIQGDSE-SEAHLLD--SKVPSVELTNLYPYCDYEMKVCAYGAQ 81 (234)
T ss_dssp CCCCEEEEEEECSSSCEEEEEECC-SSCCCEEEEEEEETTSCG-GGCEEEE--ESSSEEEECSCCTTCEEEEEEEEEETT
T ss_pred CCCCcceEEEEcCCCEEEEEEECC-CCccceEEEEEEECCCCc-cceEEEc--CCccEEEECCCCCCCEEEEEEEEEeCC
Confidence 445689999999999999999998 458999999999876432 2222222 467899999999999999999999999
Q ss_pred eeCCCCCceEEeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCc-----ceEEE-EecCC
Q psy574 624 VDGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNS-----ALINM-TVSAS 697 (977)
Q Consensus 624 g~g~~s~~~~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~-----~~~~~-~~~~~ 697 (977)
|.|++|..+.++|.+.+|. +|.++++...+.++|.|+|++| ...+|.|.+|+|+|+..+.. ..... .....
T Consensus 82 G~g~~s~~~~~~T~~~~P~-~P~~l~~~~~~~~sv~l~W~~p--~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~ 158 (234)
T 3f7q_A 82 GEGPYSSLVSCRTHQEVPS-EPGRLAFNVVSSTVTQLSWAEP--AETNGEITAYEVCYGLVNDDNRPIGPMKKVLVDNPK 158 (234)
T ss_dssp EECCCCCCEEEECCCCCCC-CCCCCEEEECSSSCEEEECCCC--SCCSSCCCEEEEEEEEBCTTSCBSSCCEECCCSCTT
T ss_pred CcCCCCCeEEEEcCCCCCC-CCCccEEEEecCCEEEEEEcCC--CCCCCceeEEEEEEEECCCCCCccCcceEEEecCCc
Confidence 9999999999999999997 5789999999999999999998 67889999999999975421 11222 22445
Q ss_pred cCeEEecCCCCCceEEEEEEEEcCCCcCCCCCc-eEEeecCCC
Q psy574 698 TPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRP-ALLSLTSGP 739 (977)
Q Consensus 698 ~~~~~l~~L~p~t~Y~~~V~A~~~~G~g~~S~~-~~~~t~~~~ 739 (977)
.++++|.+|+|++.|.|+|+|+|.+|.|++|.+ +.++|.+..
T Consensus 159 ~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~~T~~~~ 201 (234)
T 3f7q_A 159 NRMLLIENLRESQPYRYTVKARNGAGWGPEREAIINLATQPKR 201 (234)
T ss_dssp CCEEEEECCCTTCCEEEEEEEEETTEECCCEEEEECGGGSCCC
T ss_pred ceEEEeCCCCCCCeEEEEEEEECCCccCCCcCceeEeecCCCC
Confidence 679999999999999999999999999999985 677776654
No 124
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, IG, membrane, homphilic, glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB: 2xy2_A* 2vaj_A
Probab=99.90 E-value=8.8e-23 Score=205.82 Aligned_cols=174 Identities=18% Similarity=0.370 Sum_probs=148.4
Q ss_pred cceecccceEEeCCCcEEEEEECCCCCCCCeEEEEe-CCEEeecCCCceEEEecCc---EEEEcCCCCCCCeEEEEEEEe
Q psy574 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKK-NGHPIDFENSKRLRLVDGT---NLAIQDSRKTDDGRYQCVVKN 82 (977)
Q Consensus 7 ~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k-~g~~l~~~~~~r~~~~~~g---~L~I~~v~~~D~G~Y~C~a~n 82 (977)
+|.+.|.++.+.+|++++|.|.+ .+.|. .|.|+| +|..+.. ..|+.+..++ .|.|.+++.+|+|.|+|.+.|
T Consensus 4 ~~~~~~~~~~v~~G~~v~L~C~~-~~~p~-~v~W~~~~~~~~~~--~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 79 (189)
T 2v44_A 4 QVTISLSKVELSVGESKFFTCTA-IGEPE-SIDWYNPQGEKIIS--TQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATD 79 (189)
T ss_dssp EEEESCSEEEEETTCCEEEEEEE-EECCS-EEEEECTTSCBCCC--CSSEEEEEETTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred EEEecCCceEEecCCcEEEEEEe-ecCCe-eEEEEeCCCCccCC--CceEEEECCCCeEEEEEccCCcccCeEEEEEEEe
Confidence 57889999999999999999999 67777 999999 7887743 3466665544 899999999999999999999
Q ss_pred cCceeeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCC---CCceEEeccceEEEccCc
Q psy574 83 VAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMP---EDRMSVLPSRSLQLSDVR 159 (977)
Q Consensus 83 ~~g~~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~---~~~~~~~~~~~L~I~~v~ 159 (977)
..|...+..+.|.|..+|.+...+....+.+|+.+.|.|.+.|.|.+.+.|+|++..+. ..++....++.|.|.++.
T Consensus 80 ~~g~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~v~ 159 (189)
T 2v44_A 80 AKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNIN 159 (189)
T ss_dssp TTSCEEEEEEEEEEECCCEEESCCCSEEEETTSCEEECCEEECSSCCEEEEEEEC--CEECCCTTEEECTTSCEEETTCC
T ss_pred CCCCcEEEEEEEEEecCCceeecCCcEEEeCCCCEEEEEEECcCCCCcEEEEECCcEEeccCCCCEEEecCCcEEEEEcC
Confidence 98877678889999999999888888899999999999999999999999999998874 567777788899999999
Q ss_pred cCCCeEEEEEEEeCCeeEEEEEEEE
Q psy574 160 LEDAGEYVCEAENAVGKISASATLT 184 (977)
Q Consensus 160 ~~D~G~Y~C~a~n~~g~~~~~~~L~ 184 (977)
.+|+|.|+|.|.|..+.......+.
T Consensus 160 ~~d~G~Y~C~a~n~~~~~~~~~~~~ 184 (189)
T 2v44_A 160 KSDEGIYRCEGRVEARGEIDFRDII 184 (189)
T ss_dssp GGGCEEEEEEEEETTTTEEEEEEEE
T ss_pred cccCeEEEEEEEccccCceeeeeEE
Confidence 9999999999999986544433333
No 125
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Probab=99.90 E-value=1.6e-22 Score=208.22 Aligned_cols=186 Identities=28% Similarity=0.455 Sum_probs=150.0
Q ss_pred ccccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEec--CcEEEEcCCC-CCCCeEEEEEE
Q psy574 4 LREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD--GTNLAIQDSR-KTDDGRYQCVV 80 (977)
Q Consensus 4 l~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~--~g~L~I~~v~-~~D~G~Y~C~a 80 (977)
..|.|...|.++.+.+|++++|.|.+ .|.|.+.|.|+|+|..+.......+.... +..|.|.+++ .+|+|.|+|.|
T Consensus 5 ~~P~~~~~p~~~~v~~G~~v~L~C~~-~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~a 83 (212)
T 2yd6_A 5 TPPRFTRTPVDQTGVSGGVASFICQA-TGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVA 83 (212)
T ss_dssp EEEEEEECCCCEEEETTSCEEEEEEE-EEESCCEEEEEETTEECCCTTEEEEEEGGGTEEEEEECSCCTTTTCEEEEEEE
T ss_pred CCCeEEeCcceeEEecCCeEEEEEEE-eeCCCCEEEEEECCcCCCCCceeEEEEcCCCceEEEEeccCCCCCCeEEEEEE
Confidence 46889999999999999999999999 68899999999999999533222222221 2469999994 99999999999
Q ss_pred EecCceeeeEeEEEEEEcC-------CeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCC----CceEEec
Q psy574 81 KNVAGTRESTDAVLRVLVK-------PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPE----DRMSVLP 149 (977)
Q Consensus 81 ~n~~g~~~s~~~~l~V~~~-------P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~----~~~~~~~ 149 (977)
.|..|. .+..+.|.|..+ |.+...|....+.+|+.+.|.|.+.|.|.+.+.|+|++..+.. .++....
T Consensus 84 ~n~~g~-~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~ 162 (212)
T 2yd6_A 84 SNNVGE-ISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLR 162 (212)
T ss_dssp EETTEE-EEEEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEEC------CCEEEEE
T ss_pred EcCCCc-EEEEEEEEEeccCccCCCcceeecCCcceeEecCCCEEEEEEecCCCCCeEEEEECCccccCcCCCceEEEEe
Confidence 998887 456678888754 6788888888999999999999999999999999999998864 2444332
Q ss_pred ---cceEEEccCccCCCeEEEEEEEeCCeeE-EEEEEEEEeeCCeE
Q psy574 150 ---SRSLQLSDVRLEDAGEYVCEAENAVGKI-SASATLTVQMAPIV 191 (977)
Q Consensus 150 ---~~~L~I~~v~~~D~G~Y~C~a~n~~g~~-~~~~~L~V~~~p~~ 191 (977)
...|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|..++.+
T Consensus 163 ~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~s~~a~l~~~~~~~~ 208 (212)
T 2yd6_A 163 SESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVRGTKHH 208 (212)
T ss_dssp ETTEEEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC----
T ss_pred cCCeEEEEEcCCCcccCEEEEEEEECCCCccccccccEEEEecccc
Confidence 3789999999999999999999999985 46688888877665
No 126
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A
Probab=99.90 E-value=1.4e-22 Score=205.23 Aligned_cols=183 Identities=26% Similarity=0.395 Sum_probs=154.1
Q ss_pred ccccccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCC--ceEEEec-CcEEEEcCCCCCCCeEEEE
Q psy574 2 SLLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENS--KRLRLVD-GTNLAIQDSRKTDDGRYQC 78 (977)
Q Consensus 2 a~l~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~--~r~~~~~-~g~L~I~~v~~~D~G~Y~C 78 (977)
+--.|.|...|.++.+.+|++++|.|.+ .+.|.+.|.|+|+|..+..... .++.... +..|.|.+++.+|+|.|+|
T Consensus 2 ~~~~P~~~~~~~~~~v~~G~~v~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 80 (194)
T 2a38_A 2 TTQAPTFTQPLQSVVVLEGSTATFEAHI-SGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSL 80 (194)
T ss_dssp CCEEEEEEECCCCEEEETTSCEEEEEEE-EEESCCEEEEEESSSBCCTTTSTTCEEEEETTEEEEEESSCCGGGCEEEEE
T ss_pred CCCCCeEEccCCceEEECCCEEEEEEEE-EecCCCEEEEEECCEEcccccCCceEEEeCCCEEEEEECCCCcccCEEEEE
Confidence 4456889999999999999999999999 7889999999999999865442 3333332 2379999999999999999
Q ss_pred EEEecCceeeeEeEEEEEE---cCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCC-ceEEeccc---
Q psy574 79 VVKNVAGTRESTDAVLRVL---VKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED-RMSVLPSR--- 151 (977)
Q Consensus 79 ~a~n~~g~~~s~~~~l~V~---~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~-~~~~~~~~--- 151 (977)
.+.|..|... ..+.|.|. .+|.+...+....+.+|+.+.|.|.+.|.|.+.+.|+|++..+... ++.+..++
T Consensus 81 ~~~n~~~~~~-~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~ 159 (194)
T 2a38_A 81 KATNGSGQAT-STAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLY 159 (194)
T ss_dssp EEEETTEEEE-EEEEEEEECCCEEEEEEECCCCEEECTTEEEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEEETTEE
T ss_pred EEEcCCceEe-EEEEEEEccCCCCCEEEeCCccEEEcCCCEEEEEEEEEEecCCeEEEEECCEECCCCCcEEEEEcCCEE
Confidence 9999887643 45678887 5778888888889999999999999999999999999999988653 44444333
Q ss_pred eEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEEe
Q psy574 152 SLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQ 186 (977)
Q Consensus 152 ~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~ 186 (977)
.|.|.++..+|+|.|+|.|.|..|.....+.|.|.
T Consensus 160 ~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 194 (194)
T 2a38_A 160 SLLIAEAYPEDSGTYSVNATNSVGRATSTAELLVQ 194 (194)
T ss_dssp EEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred EEEECCCChhcCeEEEEEEEeCCCceEEEEEEEEC
Confidence 79999999999999999999999998888888874
No 127
>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2
Probab=99.90 E-value=1.9e-22 Score=233.08 Aligned_cols=264 Identities=18% Similarity=0.265 Sum_probs=185.4
Q ss_pred CCCceEEeCCCeEEEEEEecccC--ceEEEEEECC--eeC------------------CCCceEEec-----cceEEEcc
Q psy574 105 GPKDTTVSASSIIVFECSVGGDA--VLTVHWKRLG--SAM------------------PEDRMSVLP-----SRSLQLSD 157 (977)
Q Consensus 105 ~p~~~~v~~G~~v~l~C~v~g~p--~~~i~W~k~~--~~l------------------~~~~~~~~~-----~~~L~I~~ 157 (977)
.|....+.+|++++|.|.+.+.+ .+.+.|+|+. ..+ ..+|+.+.. +.+|.|.+
T Consensus 6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~ 85 (444)
T 1igt_B 6 ESGGGLVQPGGSLKLSCATSGFTFSDYYMYWVRQTPEKRLEWVAYISNGGGSTYYPDTVKGRFTISRDNAKNTLYLQMSR 85 (444)
T ss_dssp EECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCGGGTTTEEEEEETTTTEEEEEECS
T ss_pred cCCCeEEcCCCCEEEEEEcCCCccCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEeCCCCeEEEEECC
Confidence 45567899999999999997764 5789999863 211 124666543 35899999
Q ss_pred CccCCCeEEEEEEEeCCee---EEEEEEEEEee----CCeEEecCCCcEEeeCCeEEEEEEEecC-CCC-eEEEEEcCee
Q psy574 158 VRLEDAGEYVCEAENAVGK---ISASATLTVQM----APIVRERPSDLRLEVGRDAVFLCGIEGS-PPP-STFWMLEGNR 228 (977)
Q Consensus 158 v~~~D~G~Y~C~a~n~~g~---~~~~~~L~V~~----~p~~~~~p~~~~v~~G~~v~L~C~~~g~-p~~-~i~W~~~g~~ 228 (977)
++.+|+|.|+|.+.|..+. ....+.|.|.. +|.+...+....+.+|+.++|.|.+.|. |.+ .+.|++++..
T Consensus 86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~ 165 (444)
T 1igt_B 86 LKSEDTAMYYCARHGGYYAMDYWGQGTTVTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLS 165 (444)
T ss_dssp CCGGGCEEEEEEEECSSSCEEEEBCCEEEEECSCCCBCCEEEEECCCSSCCCSSCEEEEEEEEEEBSSCCEEEEGGGTBC
T ss_pred CCHHHCEEEEEEEecCCcccccccCcEEEEecCCCCCCCceeEecccccCCCCCcEEEEEEEcceeCCCcEEEEecCCCC
Confidence 9999999999999987543 22346788773 4555543333445899999999999885 776 9999999875
Q ss_pred eeecCCC---ccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEECC-------------CCCC
Q psy574 229 SLIYPGD---RVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGP-------------DPNP 292 (977)
Q Consensus 229 ~~~~~~~---~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~~-------------~~~~ 292 (977)
+...... ..+.+... +.|.|.+++.+| |.|+ |.|.|..+.......+.+.+. ....
T Consensus 166 ~~~~~~~~~~~~~~~~~~------s~L~i~~~~~~d-g~Y~-C~a~n~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 237 (444)
T 1igt_B 166 SGVHTFPAVLQSDLYTLS------SSVTVTSSTWPS-QSIT-CNVAHPASSTKVDKKIEPRGPTIKPCPPCKCPAPNLLG 237 (444)
T ss_dssp TTEEECCCEEETTEEEEE------EEEEECSTTTTT-SCCE-EEEEETTTTEEEEEECCCCCCSCCCCCCCSCCCSCCCC
T ss_pred CCeEecCccccCCcEEEE------EEEEEchhhcCC-CeEE-EEEEeCCCCcceEEEeccCCCCcccCCccccCCcccCC
Confidence 3111000 01222222 379999999999 9999 999999998755555543210 1112
Q ss_pred CCeE-EeCCCcee-ecCCCcEEEEEEEcc-C---c--eEEEEECCEEcCCCCc--EEEe------cCceEEEeccCCCCC
Q psy574 293 PPVI-LFGPANQT-LPLRSEARLRCQVRG-E---G--SVQWWRGEREVGSGPR--VNVT------GDGSLVLTDVTKEDS 356 (977)
Q Consensus 293 pp~i-~~~p~~~~-v~~g~~~~L~C~~~~-~---p--~i~W~~~g~~l~~~~~--~~~~------~~~sl~I~~v~~~d~ 356 (977)
+|.+ ..+|.... +..|+.+.|.|.+.+ . + .|.|++++..+..... .... ..++|.|.++...|.
T Consensus 238 ~p~v~~~~p~~~~~~~~G~~~~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~ 317 (444)
T 1igt_B 238 GPSVFIFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSG 317 (444)
T ss_dssp CCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHHTT
T ss_pred CceEEecCCchhheeecCCCcEEEEEEeecccCCCCeEEEEEECCccccCcccccceeCCCCcEEEEEEEEEcHHHhccC
Confidence 4554 55555444 689999999999998 4 3 7999999988754321 1111 234699999999999
Q ss_pred eEEEEEEEcCCCceEEEEEE
Q psy574 357 GEYTCVVKSPHGSASWSASL 376 (977)
Q Consensus 357 G~Y~C~a~n~~G~~~~s~~l 376 (977)
|.|+|.|.|..|.......+
T Consensus 318 G~Y~C~a~n~~~~~~~~~~v 337 (444)
T 1igt_B 318 KEFKCKVNNKDLPAPIERTI 337 (444)
T ss_dssp CEEEEEEECTTCSSCEEEEE
T ss_pred CcEEEEEEcCCCCCceEEEE
Confidence 99999999999876433333
No 128
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}
Probab=99.89 E-value=2.3e-22 Score=205.66 Aligned_cols=177 Identities=11% Similarity=0.143 Sum_probs=137.5
Q ss_pred cccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEec-Cc--EEEEcCCCCCCCeEEEEEEE
Q psy574 5 REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD-GT--NLAIQDSRKTDDGRYQCVVK 81 (977)
Q Consensus 5 ~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~-~g--~L~I~~v~~~D~G~Y~C~a~ 81 (977)
.|.|.. +..+.+.+|+.+.|.|.+..+.|.+.|.|+|||+.|......++.... ++ +|.|.+++.+|+|.|+|.|.
T Consensus 3 ~p~~~~-~~~~~v~eg~~v~l~c~~~~~~P~p~i~W~kng~~l~~~~~~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a~ 81 (207)
T 3rbs_A 3 DPFTKS-ELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQ 81 (207)
T ss_dssp ---CCE-EEEEEECGGGCEEEEEECSCCCSCCEEEEEETTEEECSSSSCEEEECTTTCEEEEEESCCCGGGCEEEEEEEE
T ss_pred CCeeec-CCceEEEeCCeEEEEEEEecCCCCCEEEEEECCEECccCCCEEEEEeCCCCEEEEEECCCChhhCEEEEEEEE
Confidence 344544 447899999999999999666899999999999999655555555533 23 59999999999999999999
Q ss_pred ecCceeeeEeEEEEEE---------------------cCCeEEeCCCceEEeCCCeEEEEEEeccc-CceEEEEEECCee
Q psy574 82 NVAGTRESTDAVLRVL---------------------VKPYIIRGPKDTTVSASSIIVFECSVGGD-AVLTVHWKRLGSA 139 (977)
Q Consensus 82 n~~g~~~s~~~~l~V~---------------------~~P~~~~~p~~~~v~~G~~v~l~C~v~g~-p~~~i~W~k~~~~ 139 (977)
|... . ....+.+. .+|.|...+ +..+.+|+++.|.|.+.|. |.|.|.|+|++..
T Consensus 82 Ng~a--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~-~~~v~~g~~v~l~C~v~g~~P~p~i~W~k~g~~ 157 (207)
T 3rbs_A 82 DGKA--T-NHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYL-SWEVTGECNVLLKCKVANIKKETHIVWYKDERE 157 (207)
T ss_dssp ETTE--E-EEEEEEECTHHHHHHHHHHHHHHHHHHHHTSSEEEEEE-EEEEETTTEEEEEEEEESCCTTCEEEEEETTEE
T ss_pred CCCe--E-EEEEEEEEccchhhhcccccccccccccCCCCceEecC-CcEEcCCCcEEEEEEEeCCCCCCEEEEEECCEE
Confidence 9432 2 22232211 267777665 5788999999999999998 9999999999998
Q ss_pred CCCC-ceEEe-ccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEEe
Q psy574 140 MPED-RMSVL-PSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQ 186 (977)
Q Consensus 140 l~~~-~~~~~-~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~ 186 (977)
+..+ ++... ...+|.|.+++.+|+|.|+|.|.|..|..+..+.|++.
T Consensus 158 l~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~~~ 206 (207)
T 3rbs_A 158 ISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDE 206 (207)
T ss_dssp ECCCCCCCCSSEEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEEECCC
T ss_pred CCCCCceEcCCCEEEEEECCCCcccCEEEEEEEEcCCCEEEEEEEEecC
Confidence 8653 32221 22469999999999999999999999999999888753
No 129
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A
Probab=99.89 E-value=4.1e-22 Score=202.35 Aligned_cols=180 Identities=24% Similarity=0.357 Sum_probs=151.1
Q ss_pred ccccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEe--cCc--EEEEcCCCCCCCeEEEEE
Q psy574 4 LREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV--DGT--NLAIQDSRKTDDGRYQCV 79 (977)
Q Consensus 4 l~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~--~~g--~L~I~~v~~~D~G~Y~C~ 79 (977)
..|.|...|.++.+.+|++++|.|.+ .+.|.+.|.|+|+|..+.. ...++.+. .++ .|.|.+++.+|+|.|+|.
T Consensus 3 ~~P~~~~~~~~~~v~~G~~v~l~C~~-~~~p~~~v~W~~~~~~~~~-~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 80 (197)
T 2j8h_A 3 MAPHFKEELRNLNVRYQSNATLVCKV-TGHPKPIVKWYRQGKEIIA-DGLKYRIQEFKGGYHQLIIASVTDDDATVYQVR 80 (197)
T ss_dssp CCCEEEECCCCEEEETTSCEEEEEEE-ECSSCCEEEEEETTEECCC-CSSSEEEEEETTTEEEEEECSCCGGGCSEEEEE
T ss_pred CCCEEEEcCCccEEcCCCEEEEEEEE-eecCCCEEEEEECCEECcc-CCCcEEEEEcCCCEEEEEECcCCHHhCEEEEEE
Confidence 35889999999999999999999999 7899999999999999853 33455443 344 899999999999999999
Q ss_pred EEecCceeeeEeEEEEEEcCCeEEeC-----CCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCC-CceEEe---cc
Q psy574 80 VKNVAGTRESTDAVLRVLVKPYIIRG-----PKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPE-DRMSVL---PS 150 (977)
Q Consensus 80 a~n~~g~~~s~~~~l~V~~~P~~~~~-----p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~-~~~~~~---~~ 150 (977)
+.|..|.. +..+.|.|..+|.+... +....+.+|+.+.|.|.+.|.|.+.+.|+|++..+.. .++.+. ..
T Consensus 81 ~~n~~g~~-~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~ 159 (197)
T 2j8h_A 81 ATNQGGSV-SGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSF 159 (197)
T ss_dssp EEETTEEE-EEEEEEEEEEEEEECCSSCBTTBEEEEEETTCCCEEEEEEEEESCCEEEEEESSCEECSSSSCEEEECSSE
T ss_pred EEECCCce-eEEEEEEEcCCCcCCCCccccccCeEEEeCCCEEEEEEEEEecCCCcEEEEECCEEeecCCCEEEEEcCCc
Confidence 99988764 56788888877765433 3456788999999999999999999999999988754 344443 34
Q ss_pred ceEEEcc-CccCCCeEEEEEEEeCCeeEEEEEEEEEe
Q psy574 151 RSLQLSD-VRLEDAGEYVCEAENAVGKISASATLTVQ 186 (977)
Q Consensus 151 ~~L~I~~-v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~ 186 (977)
..|.|.+ +..+|+|.|+|.|.|..|..+..+.|.|.
T Consensus 160 ~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~ 196 (197)
T 2j8h_A 160 TSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVA 196 (197)
T ss_dssp EEEECTTCCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred eEEEEeCCCCcccCEeEEEEEEeCCCcEeEEEEEEEe
Confidence 6899999 99999999999999999999999999885
No 130
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}
Probab=99.89 E-value=1.5e-21 Score=197.03 Aligned_cols=183 Identities=21% Similarity=0.339 Sum_probs=154.0
Q ss_pred cCCeEEeCCCceEEeC-CCeEEEEEEecccCc--eEEEEEECCeeCCCCceEEeccceEEEccCccCCCeEEEEEEEeCC
Q psy574 98 VKPYIIRGPKDTTVSA-SSIIVFECSVGGDAV--LTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAV 174 (977)
Q Consensus 98 ~~P~~~~~p~~~~v~~-G~~v~l~C~v~g~p~--~~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~ 174 (977)
.+|.+...+ ...+.+ |+++.|.|.+.+.|. +.+.|+|++..+...+... .+..|.|.+++.+|+|.|+|.+.|.
T Consensus 2 ~~P~i~~~~-~~~v~~~G~~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~~~n~- 78 (190)
T 2wv3_A 2 NEPRIVTSE-EVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNA-SNMEYRINKPRAEDSGEYHCVYHFV- 78 (190)
T ss_dssp -CCEEEECC-CEECCCSSSCEEEEEEEEECSSCEEEEEEEETTEECTTCCBCC-SEEEEEESSCCGGGCEEEEEEEEET-
T ss_pred CCCcccccc-eEEEccCCceEEEEEEeccCCCCceEEEEEECCEECcccceEe-ccEEEEEecCCcccCEEEEEEEEeC-
Confidence 467776644 556666 999999999988876 8999999999987654433 6688999999999999999999999
Q ss_pred eeEEEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEE--cCeeeeecCCCccccEEEEEccCCceEE
Q psy574 175 GKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWML--EGNRSLIYPGDRVDNIQAEITSDGMNLL 252 (977)
Q Consensus 175 g~~~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~--~g~~~~~~~~~~~~~~~~~~~~~g~s~L 252 (977)
+.....+.|.|..+|.+...+....+.+|+.++|.|.+.|.|.+.+.|++ ++..+.. .....++.+... .+...|
T Consensus 79 ~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~g~~~~~--~~~~~~~~~~~~-~~~~~L 155 (190)
T 2wv3_A 79 SAPKANATIEVKAAPDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEI--SNSSGRFFIINK-ENYTEL 155 (190)
T ss_dssp TEEEEEEEEEEECCCEEEEECSEEEEETTSCEEEEEEEECSSCCEEEEEEEETTEEEEC--CCTTSCEEEEEC-SSEEEE
T ss_pred CcccccEEEEEecCCcccccCCcceeeCCCcEEEEEEeCccCCCceEEEEcCCCceeee--ecCCCeEEEecC-CCeeEE
Confidence 88899999999999999998888899999999999999999999999999 5655432 224566666653 334689
Q ss_pred EEeecc-cCCCCeEEEEEEEcCCCceeEEEEEEEEC
Q psy574 253 KIQNVS-RTAAPLIILCLGVNAAGSDLARASLTVSG 287 (977)
Q Consensus 253 ~I~~v~-~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~ 287 (977)
.|.+++ .+|+|.|+ |.|.|..|.....+.|.|+.
T Consensus 156 ~i~~~~~~~d~G~Y~-C~a~N~~g~~~~~~~l~V~V 190 (190)
T 2wv3_A 156 NIVNLQITEDPGEYE-CNATNSIGSASVSTVLRVRV 190 (190)
T ss_dssp EECSCCTTTSCEEEE-EEEECSSCEEEEEEEEEEEC
T ss_pred EEEeccccCCCEEEE-EEEEecCCcceeEEEEEEEC
Confidence 999999 79999999 99999999999998888863
No 131
>2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding; 2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 PDB: 2ibb_A
Probab=99.89 E-value=3.3e-22 Score=206.15 Aligned_cols=188 Identities=18% Similarity=0.209 Sum_probs=151.4
Q ss_pred EEEeeEeCCCeEEEEEEec--CCCccceEEEEEEecCCCCCceEEEEee----------cCccceEEECCCCCCcEEEEE
Q psy574 549 LTEVKPMTSTSVKLTWEIL--NTDYIEGVYIYSRGLDPPASVAMLTVLH----------AGEASGFLVTGLAHYSRYEFF 616 (977)
Q Consensus 549 ~l~~~~~~~tsv~lsW~~p--~~~~i~~Y~v~y~~~~~~~~~~~~~~~~----------~~~~~~~~i~~L~p~t~Y~~~ 616 (977)
++++..++.++|.|+|++| .++.+.+|.|+|+..+....|....... .....++.+.+|+|++.|.|+
T Consensus 7 ~~~~~~~~~~sv~l~W~~p~~~~~~i~~Y~v~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~ 86 (214)
T 2ibg_A 7 PPNVTRLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWNSELGKSFTASVTDLKPQHTYRFR 86 (214)
T ss_dssp CCEEEEEETTEEEEEEEEECCSSCCEEEEEEEEEESSSSCCCEECSCCEECCSSSCSSSSEEEEEEEECSCCTTCEEEEE
T ss_pred CCEeeEecCCEEEEEEECCCCCCCCceEEEEEEEECCCCCcCcccccccCccccccccccCcceeEEecCCcCCCEEEEE
Confidence 4566778999999999999 5578999999999987656776543211 124578999999999999999
Q ss_pred EEEeecceeCCCCC-ceEEeccCC---CCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCC-cceEE
Q psy574 617 LVPFFGSVDGKPSN-LRAVRTLEC---EPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNN-SALIN 691 (977)
Q Consensus 617 V~a~n~~g~g~~s~-~~~~~T~~~---~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~-~~~~~ 691 (977)
|+|.|..|.|..+. ...+.+... .|..+|.++++...+.++|.|+|++|. +..++.|.+|.|+|+..+. ..+..
T Consensus 87 V~A~n~~g~~~~s~~s~~~~~~~~~~~~~~~~P~~~~~~~~~~~sv~l~W~~p~-~~~~~~i~~Y~v~~~~~~~~~~~~~ 165 (214)
T 2ibg_A 87 ILAVYSNNDNKESNTSAKFYLQPGAALDPMPVPELLEIEEYSETAVVLHWSLAS-DADEHLITGYYAYYRPSSSAGEYFK 165 (214)
T ss_dssp EEEEETTSCEEECCCCCCEECCCSTTSCCCCCCEECCCBCCSSSCEEEEEECCT-TCCGGGCCEEEEEEEETTCCSCCEE
T ss_pred EEEEecCCCCCCCCCcccEEeccCcCCCCCCCCcccEEEEccCCeEEEEEeCCC-ccCCCCcceEEEEEEECCCCcceEE
Confidence 99999998877665 444555444 234478899988888899999999996 5788999999999998653 44444
Q ss_pred EEec-CCcCeEEecCCCCCceEEEEEEEEcCCCcCCCCCceEEeecC
Q psy574 692 MTVS-ASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTS 737 (977)
Q Consensus 692 ~~~~-~~~~~~~l~~L~p~t~Y~~~V~A~~~~G~g~~S~~~~~~t~~ 737 (977)
..+. ...++++|.+|+|++.|.|+|+|+|.+|.|++|.++.++|..
T Consensus 166 ~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~~ 212 (214)
T 2ibg_A 166 ATIEGAHARSFKIAPLETATMYEFKLQSFSAASASEFSALKQGRTQR 212 (214)
T ss_dssp EEEECTTCCEEEECSCCTTCEEEEEEEEECSSCBCCCCCCEEEECCC
T ss_pred eeccCCcceEEEeCCCCCCCEEEEEEEEEcCCccCCCcceEeeEecC
Confidence 4444 346899999999999999999999999999999999998864
No 132
>1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1
Probab=99.89 E-value=1.6e-21 Score=199.47 Aligned_cols=195 Identities=15% Similarity=0.208 Sum_probs=158.4
Q ss_pred CCCCCCCCCeEEeeCCCceEEEEEcCCCCCCcccceEEEEEeecCCCCCCCCCCCCcccEEEec--eecCcCeEEEEccC
Q psy574 396 TYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVA--TNVPSPILTVTNLT 473 (977)
Q Consensus 396 ~~p~~P~~~~v~~~~~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~--~~~~~~~~~i~~L~ 473 (977)
..|++|.++.+.. +.+++.|+|.++.+ +++.+.+|.|+|+...... .|.... .......+.+ +|.
T Consensus 4 ~~P~~P~~~~~~~-~~~sv~l~W~~p~~-~~~~i~~Y~v~~~~~~~~~----------~w~~~~~~~~~~~~~~~~-~L~ 70 (205)
T 1cfb_A 4 DVPNAPKLTGITC-QADKAEIHWEQQGD-NRSPILHYTIQFNTSFTPA----------SWDAAYEKVPNTDSSFVV-QMS 70 (205)
T ss_dssp CCCCCCEEEEEEE-CSSEEEEEEECCCC-TTSCCCEEEEEEEESSSTT----------CCEEEEEEEETTCSEEEE-ECC
T ss_pred cCCCCCCCcEEEe-cCCEEEEEEECccc-CCCceEEEEEEEecCCCCC----------CceeeeeccCCCceEEEE-eCC
Confidence 5689999999999 99999999999965 6788999999997654322 675443 2345567777 999
Q ss_pred CCCeEEEEEEEEcCCCCCCCCCCCceEEeeccccccccccCCcceeecCCCCCCCcchHHHHhhcccccCCceEEEEEee
Q psy574 474 VGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVK 553 (977)
Q Consensus 474 p~t~Y~~~V~a~n~~G~s~~S~~s~~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~g~~~~~~~~~l~~~~~~~~~~l~~~ 553 (977)
|++.|.|+|+|.|..|.|.+|..+..+++....|.. ++.++++.
T Consensus 71 p~t~Y~~~V~A~n~~G~~~~s~~~~~~~T~~~~P~~------------------------------------~P~~~~~~ 114 (205)
T 1cfb_A 71 PWANYTFRVIAFNKIGASPPSAHSDSCTTQPDVPFK------------------------------------NPDNVVGQ 114 (205)
T ss_dssp SSEEEEEEEEEEETTEECCCCCCCCCEEECCCCCSC------------------------------------CCSCCEEE
T ss_pred CCCEEEEEEEEEECCccCCCCCCceeEEcCCcCCCC------------------------------------CCeeeEee
Confidence 999999999999999999988656666664433311 12457788
Q ss_pred EeCCCeEEEEEEec----CCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeecceeCCC-
Q psy574 554 PMTSTSVKLTWEIL----NTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKP- 628 (977)
Q Consensus 554 ~~~~tsv~lsW~~p----~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~g~~- 628 (977)
..+.++|.|+|++| .++.+.+|+|+|+..+....|....+.. ...+++.|.+|.|++.|.|+|+|+|..|.|++
T Consensus 115 ~~~~~sv~l~W~~p~~~~~ng~i~~Y~v~~~~~~~~~~~~~~~~~~-~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~s 193 (205)
T 1cfb_A 115 GTEPNNLVISWTPMPEIEHNAPNFHYYVSWKRDIPAAAWENNNIFD-WRQNNIVIADQPTFVKYLIKVVAINDRGESNVA 193 (205)
T ss_dssp CSSTTCEEEECCCCCGGGTCSSSCEEEEEEEESSTTCCCEEEEECC-TTCCEEEECSCCSSCEEEEEEEEEETTEECSSC
T ss_pred cCCCCeEEEEEECCCccccCCCceEEEEEEEECCCCCCcEEEEecC-CCccEEEEcCCCCCcEEEEEEEEEcCCCcCCCC
Confidence 88999999999998 4678999999999988766687766543 46789999999999999999999999999995
Q ss_pred CCceEEeccCCC
Q psy574 629 SNLRAVRTLECE 640 (977)
Q Consensus 629 s~~~~~~T~~~~ 640 (977)
|..+.++|.|++
T Consensus 194 s~~v~~~T~e~v 205 (205)
T 1cfb_A 194 AEEVVGYSGEDR 205 (205)
T ss_dssp CCCEEEESSSCC
T ss_pred CCcEEEecCCCC
Confidence 788999998864
No 133
>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2
Probab=99.88 E-value=2.6e-22 Score=223.37 Aligned_cols=257 Identities=16% Similarity=0.275 Sum_probs=175.1
Q ss_pred eCCCceEEeCCCeEEEEEEeccc--CceEEEEEEC--CeeC------------------CCCceEEec-----cceEEEc
Q psy574 104 RGPKDTTVSASSIIVFECSVGGD--AVLTVHWKRL--GSAM------------------PEDRMSVLP-----SRSLQLS 156 (977)
Q Consensus 104 ~~p~~~~v~~G~~v~l~C~v~g~--p~~~i~W~k~--~~~l------------------~~~~~~~~~-----~~~L~I~ 156 (977)
..|....+.+|++++|.|.+.+. +.+.|.|+|+ +..+ ..+|+.+.. ..+|.|.
T Consensus 5 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~ 84 (344)
T 1za6_B 5 VQSGAEVVKPGASVKISCKASGYTFTDHAIHWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLTADTSASTAYVELS 84 (344)
T ss_dssp EECCCEEECTTCCEEEEEEEESSCTTSSCEEEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEEEETTTTEEEEEEC
T ss_pred eCCCCeEEeCCCcEEEEEEcCCccccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEecCCCEEEEEEC
Confidence 34556789999999999999876 3678999997 3322 134666543 2589999
Q ss_pred cCccCCCeEEEEEEEeCCeeEEEEEEEEEe----eCCeEEecCCCcEEeeCCeEEEEEEEecC-CC-CeEEEEEcCeeee
Q psy574 157 DVRLEDAGEYVCEAENAVGKISASATLTVQ----MAPIVRERPSDLRLEVGRDAVFLCGIEGS-PP-PSTFWMLEGNRSL 230 (977)
Q Consensus 157 ~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~----~~p~~~~~p~~~~v~~G~~v~L~C~~~g~-p~-~~i~W~~~g~~~~ 230 (977)
+++.+|+|.|+|.|.|..+.....+.|.|. .+|.+...+....+.+|+.++|.|.+.|. |. +.|.|++++..+.
T Consensus 85 ~v~~~D~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~ 164 (344)
T 1za6_B 85 SLRSEDTAVYFCTRSLNMAYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSG 164 (344)
T ss_dssp SCCGGGCEEEEEEETTTTCEECCCEEEEECSSCCBCCEEEEECCSCTTTSSSEEEEEEEEEEEBSSCCCEEETTTTBCTT
T ss_pred CCCcccCEEEEEEEecCcceecCcEEEEEecCCCCCCeEEEccccccccCCCcEEEEEEEeeEECCCeEEEEecCCccCc
Confidence 999999999999999966555566788887 35566554444456799999999999986 54 6999999986531
Q ss_pred ec--CC--CccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEEC-------------------
Q psy574 231 IY--PG--DRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSG------------------- 287 (977)
Q Consensus 231 ~~--~~--~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~------------------- 287 (977)
.. .. ...+++... +.|.|.+++.+| |.|+ |.|.|..+.......+.+..
T Consensus 165 ~~~~~~~~~~~~~~~~~------s~L~i~~~~~~d-G~Y~-C~a~n~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~ 236 (344)
T 1za6_B 165 VHTFPAVLQSSGLYSLS------SVVTVPSSSLGT-QTYI-CNVNHKPSNTKVDKKVEPKSCDKTHTCPPCGGGSSGGGS 236 (344)
T ss_dssp EEECCCEECTTSCEEEE------EEEEEETTHHHH-BCEE-EEEEEGGGTEEEEEEECCCCC------------------
T ss_pred eeECCCeECCCCCEEEE------EEEEEcHHHcCC-CcEE-EEEEeCCCCccceEeecccccccccccCCCCCCcccccc
Confidence 11 00 112333332 289999999888 9999 99999988654443332110
Q ss_pred CCCCCCCeEEe-CCCceeecCCCcEEEEEEEcc--C--ceEEEEECCEEcCCC--CcEEEecCce------EEEeccCCC
Q psy574 288 PDPNPPPVILF-GPANQTLPLRSEARLRCQVRG--E--GSVQWWRGEREVGSG--PRVNVTGDGS------LVLTDVTKE 354 (977)
Q Consensus 288 ~~~~~pp~i~~-~p~~~~v~~g~~~~L~C~~~~--~--p~i~W~~~g~~l~~~--~~~~~~~~~s------l~I~~v~~~ 354 (977)
.....+|.+.. .+....+ .|..+.|.|.+.+ + +.|.|++||..+... .+.....+++ |.|......
T Consensus 237 ~~~~~~P~v~~~~~~~~~~-~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~ 315 (344)
T 1za6_B 237 GGQPREPQVYTLPPSRDEL-TKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQ 315 (344)
T ss_dssp --CCBCCEEEEECCCGGGG-GSSSEEEEEEEEEEBSSCCEEEEESSSSCCCSEEECCCEECTTSCEEEEEEEEECHHHHH
T ss_pred CCCCcCCEEEEeCCChHhc-cCCcEEEEEEEeeEECCCeEEEEEECCeECCCcEecceEECCCCcEEEEEEEEEChHHcc
Confidence 01123555443 3333333 4666999999998 2 379999999877543 2222234443 445555555
Q ss_pred CCeEEEEEEEcCCCc
Q psy574 355 DSGEYTCVVKSPHGS 369 (977)
Q Consensus 355 d~G~Y~C~a~n~~G~ 369 (977)
|.|.|+|.|.|....
T Consensus 316 ~~g~YtC~a~~~~l~ 330 (344)
T 1za6_B 316 QGNVFSCSVMHEALH 330 (344)
T ss_dssp TTCEEEEEEECTTST
T ss_pred CCCeEEEEEEcCCCC
Confidence 799999999997654
No 134
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}
Probab=99.88 E-value=1.5e-21 Score=197.05 Aligned_cols=174 Identities=21% Similarity=0.372 Sum_probs=144.2
Q ss_pred cccceecccceEEeC-CCcEEEEEECCCCCCC--CeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEE
Q psy574 5 REEFRVQPKSQRVAA-GDTALLECGPPRGHPE--PTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVK 81 (977)
Q Consensus 5 ~~~~~~~p~~~~v~~-G~~v~L~C~~~~g~P~--~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~ 81 (977)
+|.+.. +....+.+ |++++|.|.+ .+.|. +.|.|+|+|..+.... +. ..++.|.|.+++.+|+|.|+|.+.
T Consensus 3 ~P~i~~-~~~~~v~~~G~~v~l~C~~-~~~~~~~~~v~W~~~~~~~~~~~--~~--~~~~~L~i~~~~~~d~G~Y~C~~~ 76 (190)
T 2wv3_A 3 EPRIVT-SEEVIIRDSLLPVTLQCNL-TSSSHTLMYSYWTKNGVELTATR--KN--ASNMEYRINKPRAEDSGEYHCVYH 76 (190)
T ss_dssp CCEEEE-CCCEECCCSSSCEEEEEEE-EECSSCEEEEEEEETTEECTTCC--BC--CSEEEEEESSCCGGGCEEEEEEEE
T ss_pred CCcccc-cceEEEccCCceEEEEEEe-ccCCCCceEEEEEECCEECcccc--eE--eccEEEEEecCCcccCEEEEEEEE
Confidence 345555 44566777 9999999998 66666 8999999999984332 11 146789999999999999999999
Q ss_pred ecCceeeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEE--CCeeC----CCCceEEecc---ce
Q psy574 82 NVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKR--LGSAM----PEDRMSVLPS---RS 152 (977)
Q Consensus 82 n~~g~~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k--~~~~l----~~~~~~~~~~---~~ 152 (977)
|. +. .+..+.|.|..+|.+...+....+.+|+.+.|.|.+.|.|.+.+.|++ ++..+ ..+++.+..+ +.
T Consensus 77 n~-~~-~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 154 (190)
T 2wv3_A 77 FV-SA-PKANATIEVKAAPDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTE 154 (190)
T ss_dssp ET-TE-EEEEEEEEEECCCEEEEECSEEEEETTSCEEEEEEEECSSCCEEEEEEEETTEEEECCCTTSCEEEEECSSEEE
T ss_pred eC-Cc-ccccEEEEEecCCcccccCCcceeeCCCcEEEEEEeCccCCCceEEEEcCCCceeeeecCCCeEEEecCCCeeE
Confidence 98 54 457789999999999988988999999999999999999999999999 66665 3455555433 37
Q ss_pred EEEccCc-cCCCeEEEEEEEeCCeeEEEEEEEEEe
Q psy574 153 LQLSDVR-LEDAGEYVCEAENAVGKISASATLTVQ 186 (977)
Q Consensus 153 L~I~~v~-~~D~G~Y~C~a~n~~g~~~~~~~L~V~ 186 (977)
|.|.+++ .+|+|.|+|.|.|..|.....+.|.|.
T Consensus 155 L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~ 189 (190)
T 2wv3_A 155 LNIVNLQITEDPGEYECNATNSIGSASVSTVLRVR 189 (190)
T ss_dssp EEECSCCTTTSCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred EEEEeccccCCCEEEEEEEEecCCcceeEEEEEEE
Confidence 9999999 699999999999999999888888875
No 135
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A
Probab=99.88 E-value=4.2e-22 Score=204.76 Aligned_cols=193 Identities=28% Similarity=0.499 Sum_probs=150.8
Q ss_pred cccccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCC---ceEEEecCcEEEE-----cCCCCCCCe
Q psy574 3 LLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENS---KRLRLVDGTNLAI-----QDSRKTDDG 74 (977)
Q Consensus 3 ~l~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~---~r~~~~~~g~L~I-----~~v~~~D~G 74 (977)
...|.|...|.++.+.+|++++|.|.+ .+.|.+.|.|+|+|..+..... .+.....++.+.+ .+++.+|+|
T Consensus 7 ~~pp~i~~~p~~~~v~~G~~v~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G 85 (212)
T 2v9r_A 7 DFPPRIVEHPSDLIVSKGEPATLNCKA-EGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEG 85 (212)
T ss_dssp CEEEEEEECCCCEEECTTCCEEECCEE-EEESCCEEEEEETTEECCCTTTCTTCSEEECTTSCEEESSCCCCSSCCCSCE
T ss_pred cCCcceecCCCceEEeCCCcEEEEEEc-CCCCCCEEEEEECCEEeeccccccccceEEecCCcEEEEEEEecCCCcccCe
Confidence 346888999999999999999999999 7889999999999999853321 1233334555444 556899999
Q ss_pred EEEEEEEecCceeeeEeEEEEEEc-CCeEEeCCCceEEeCCCeEEEEEEe-cccCceEEEEEECCeeCCCC-ceEEeccc
Q psy574 75 RYQCVVKNVAGTRESTDAVLRVLV-KPYIIRGPKDTTVSASSIIVFECSV-GGDAVLTVHWKRLGSAMPED-RMSVLPSR 151 (977)
Q Consensus 75 ~Y~C~a~n~~g~~~s~~~~l~V~~-~P~~~~~p~~~~v~~G~~v~l~C~v-~g~p~~~i~W~k~~~~l~~~-~~~~~~~~ 151 (977)
.|+|.+.|..|...+..+.|.|.. ++.+...+....+.+|+.+.|.|.+ .|.|.+.+.|++++..+... ......++
T Consensus 86 ~Y~C~~~n~~g~~~~~~~~l~V~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~ 165 (212)
T 2v9r_A 86 VYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGG 165 (212)
T ss_dssp EEEEEEEETTEEEECCCEEEEECEECSSCSBCCCCEEEETTSCEEEECBCCCEESCCEEEEEETTEEECTTSTTEEEETT
T ss_pred EEEEEEECCCCceeecceEEEEEeccccceeCCCceEecCCCcEEEEEecCCCCCCCEEEEEECCccCCCCcceEEccCC
Confidence 999999998887666677888875 4566667788899999999999999 89999999999999988643 23334678
Q ss_pred eEEEccCccCCCeEEEEEEEeCCeeEEE-EEEEEEeeCCeEEecCC
Q psy574 152 SLQLSDVRLEDAGEYVCEAENAVGKISA-SATLTVQMAPIVRERPS 196 (977)
Q Consensus 152 ~L~I~~v~~~D~G~Y~C~a~n~~g~~~~-~~~L~V~~~p~~~~~p~ 196 (977)
.|.|.++..+|+|.|+|.|.|..|.... .+.|.|..+|.+...|.
T Consensus 166 ~L~i~~~~~~d~G~Y~C~a~N~~g~~~s~~~~l~V~~~P~~~~~P~ 211 (212)
T 2v9r_A 166 KLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLERPSFVKAAA 211 (212)
T ss_dssp EEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC---------
T ss_pred eEEEeeCCHhhCeeEEEEEecccCceecceEEEEEEeCchHhhhcc
Confidence 9999999999999999999999998655 48999999998877664
No 136
>2gys_A Cytokine receptor common beta chain; dimer of interlocking chains of fibronectin-III domains, FOU fibronectin-III domains PER chain; HET: NAG FUC BMA NDG; 2.70A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1gh7_A* 3cxe_A* 1egj_A* 1c8p_A
Probab=99.88 E-value=4.2e-21 Score=219.37 Aligned_cols=280 Identities=14% Similarity=0.134 Sum_probs=185.9
Q ss_pred CCCCCCCCCeEEeeCCCceEEEEEcCCCCCC-----cccceEEEEEeecCCCCCCCCCCCCcccEEEece-ecCcCeEEE
Q psy574 396 TYPGPPTKPTLVNQTANGLTLAWSRNNQIGS-----SSLLGYQVEMYSRPLPSSSPSGDTATATWVRVAT-NVPSPILTV 469 (977)
Q Consensus 396 ~~p~~P~~~~v~~~~~~sv~lsW~~p~~~~~-----~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~-~~~~~~~~i 469 (977)
..|.||.++.+.... ..+.|+|.+|..... ...+.|.|+|+... . .|..... ......+.+
T Consensus 107 v~p~pP~~l~v~~~~-~~~~l~W~~p~~~~~~~~~~~~~l~Y~v~yr~~~-~-----------~w~~~~~~~~~~~~~~~ 173 (419)
T 2gys_A 107 VQPPEPRDLQISTDQ-DHFLLTWSVALGSPQSHWLSPGDLEFEVVYKRLQ-D-----------SWEDAAILLSNTSQATL 173 (419)
T ss_dssp BCCCCCEEEEEEEET-TEEEEEEECCC-----CCSCGGGEEEEEEEEETT-S-----------CSTTCEEEEESSSEEEE
T ss_pred ccCCCCCceEEEecC-CeEEEEECCCccccccchhccCceEEEEEEccCC-C-----------ChhheeeecccceEEEe
Confidence 679999999988776 699999999876321 35689999999875 2 4543332 223455666
Q ss_pred E--ccCCCCeEEEEEEEEcCC---CCCCCCCCCceEEeeccccccccccCCcceeecCCCCCCCcchHHHHhhcccccCC
Q psy574 470 T--NLTVGLTYTFLVRALNSH---GLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGG 544 (977)
Q Consensus 470 ~--~L~p~t~Y~~~V~a~n~~---G~s~~S~~s~~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~g~~~~~~~~~l~~~~~ 544 (977)
. +|.|++.|.|+|+|.|.. +.|.+|.+|..+.... .+ . .+
T Consensus 174 ~~~~L~p~~~Y~~rVra~~~~g~~~~G~wS~WS~~~~~~t-~~-~---------------------------------~~ 218 (419)
T 2gys_A 174 GPEHLMPSSTYVARVRTRLAPGSRLSGRPSKWSPEVCWDS-QP-G---------------------------------DE 218 (419)
T ss_dssp CTTTCCTTCEEEEEEEEEECTTSSCCBCCCCCCCCEEEEC-CC-C---------------------------------CT
T ss_pred chhhcCCCCeEEEEEEEecCCCCCCCcccCCCCCceeeec-cc-c---------------------------------cc
Confidence 6 899999999999999964 4588898888877622 11 1 11
Q ss_pred ceEEEEEeeEeCCCeEEEEEEec-CCCccceEEEEEEecCCC----CCceEE-EE-eec-------CccceEEECCCCCC
Q psy574 545 SLIELTEVKPMTSTSVKLTWEIL-NTDYIEGVYIYSRGLDPP----ASVAML-TV-LHA-------GEASGFLVTGLAHY 610 (977)
Q Consensus 545 ~~~~~l~~~~~~~tsv~lsW~~p-~~~~i~~Y~v~y~~~~~~----~~~~~~-~~-~~~-------~~~~~~~i~~L~p~ 610 (977)
..+.++.+...+.++|.+.|+++ ......+|.|+|+..... ..|... .. ... .....+.+.+|.++
T Consensus 219 ~~p~~l~c~~~~~~~l~c~W~~~~~~~~~~~y~l~y~~~~~~g~~~~~~~~~C~~~~~~~~~~~~~~~~c~~~~~~l~~~ 298 (419)
T 2gys_A 219 AQPQNLECFFDGAAVLSCSWEVRKEVASSVSFGLFYKPSPDAGSAVLLREEECSPVLREGLGSLHTRHHCQIPVPDPATH 298 (419)
T ss_dssp TSCEEEEEEECSSSEEEEEEEEEHHHHTTCCEEEEEECC-----CCCCCCEECCCEEEECCTTTEEEEEEEEECSCTTTC
T ss_pred CCCceEEEEECCceEEEeEEECCCCCCCceeEEEEEEecCccccccCcccccCCCcccccCCCcceeEEeEEECccCCcc
Confidence 22478999999999999999998 111125699999876421 122211 11 110 11236778899999
Q ss_pred cEEEEEEEEeecceeCCCCCceEEeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCc-c-
Q psy574 611 SRYEFFLVPFFGSVDGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNS-A- 688 (977)
Q Consensus 611 t~Y~~~V~a~n~~g~g~~s~~~~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~-~- 688 (977)
+.|.|+|.|.++.+. +.+.+.+.++|| .+.+.. +.+++.|+|++|.....+ .+++|+|+|+..+.. .
T Consensus 299 ~~y~i~V~a~~~~~~--------~~~~~~v~p~PP-~l~v~~-~~~~l~l~W~~P~~~~~~-~~l~Yev~y~~~~~~w~~ 367 (419)
T 2gys_A 299 GQYIVSVQPRRAEKH--------IKSSVNIQMAPP-SLQVTK-DGDSYSLRWETMKMRYEH-IDHTFEIQYRKDTATWKD 367 (419)
T ss_dssp CEEEEEEEECCCCEE--------EEGGGSBCCCCC-EEEEC----CCCEEEEEC---------CEEEEEEEECSSSCSTT
T ss_pred CEEEEEEEEccCCcc--------ccceEEEEECCC-CeEEEE-eCCeEEEEECCCcccccc-cceEEEEEEEcCCCCcce
Confidence 999999999765442 222222234466 455554 468899999999532233 578999999986532 1
Q ss_pred eEEEEecCCcCeEEecCCCCCceEEEEEEEEcCCC-----cCCCCCceEEee
Q psy574 689 LINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAG-----TGPYSRPALLSL 735 (977)
Q Consensus 689 ~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~~G-----~g~~S~~~~~~t 735 (977)
.....+. +.+++.|.+|+|++.|.|+|||.+.+| .|.||+++.+.|
T Consensus 368 ~~~~~~~-~~~~~~l~~L~p~t~Y~~qVRa~~~~g~~~G~wS~WS~~~~~~t 418 (419)
T 2gys_A 368 SKTETLQ-NAHSMALPALEPSTRYWARVRVRTSRTGYNGIWSEWSEARSWDT 418 (419)
T ss_dssp SCEEEEE-SCSEEECCCCCSSCCCEEEEEEEECCTTCCBCCCCCCCCEECCC
T ss_pred eeccccc-cccEEEeccCCCCCeEEEEEEEEEcCCCCCCccCCCCCCeEeeC
Confidence 1122233 678999999999999999999999863 347888888865
No 137
>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A
Probab=99.88 E-value=1e-22 Score=224.49 Aligned_cols=246 Identities=17% Similarity=0.234 Sum_probs=165.5
Q ss_pred CeEEEEEEeccc-C-ceEEEEEECCeeCCCCceE---Eecc------ceEEEccCccCCCeEEEEEEEeCCeeEEEEEEE
Q psy574 115 SIIVFECSVGGD-A-VLTVHWKRLGSAMPEDRMS---VLPS------RSLQLSDVRLEDAGEYVCEAENAVGKISASATL 183 (977)
Q Consensus 115 ~~v~l~C~v~g~-p-~~~i~W~k~~~~l~~~~~~---~~~~------~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L 183 (977)
+++.|.|.+.|. | .+.|.|+|+|..+..+... ...+ ..|.|.++..+|+|.|+|.|.|..+.....+.+
T Consensus 25 ~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~ 104 (323)
T 2wqr_A 25 PTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDRTYTCQVTYQGHTFEDSTKK 104 (323)
T ss_dssp SEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTCCEEEEEEETTEEEEEEECC
T ss_pred CcEEEEEEEeCeECCCeEEEEEECCEEcccceecCCcCccCCcEEEEEEEEEcHHHcCCCCcEEEEEEeCCCCcceeeec
Confidence 699999999875 4 5799999999988643211 1112 357788888889999999999988766554433
Q ss_pred EEe---eCCeE-EecCCCcEEeeCCeEEEEEEEecC-CCC---eEEEEEcCeeeeecCC-----CccccEEEEEccCCce
Q psy574 184 TVQ---MAPIV-RERPSDLRLEVGRDAVFLCGIEGS-PPP---STFWMLEGNRSLIYPG-----DRVDNIQAEITSDGMN 250 (977)
Q Consensus 184 ~V~---~~p~~-~~~p~~~~v~~G~~v~L~C~~~g~-p~~---~i~W~~~g~~~~~~~~-----~~~~~~~~~~~~~g~s 250 (977)
.+. ..|.+ ...|....+.+|+.++|.|.+.+. |.+ .|.|++++........ ...+++. ..+
T Consensus 105 ~~~~~~~~p~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~p~~~~i~W~k~~g~~~~~~~~~~~~~~~g~~~------~~~ 178 (323)
T 2wqr_A 105 CADSNPRGVSAYLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHSTRKEEKQRNGTLT------VTS 178 (323)
T ss_dssp CCCSSGGGCEEEECCCCHHHHHTSSCCEEEEEEEEECCCSSCCEEEEEETTCCCCCCCCCEEEECTTSCEE------EEE
T ss_pred CCCCCCCCCEEEEcCCCHHHhccCCeEEEEEEEeccCCCCCceEEEEEECCCcccccccCCCccCCCCCEE------EEE
Confidence 111 23433 445555678899999999999885 555 8999997643321100 0111222 123
Q ss_pred EEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEECC-CCCCCCeEEeCCCceeecCCCcEEEEEEEcc--C--ceEEE
Q psy574 251 LLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGP-DPNPPPVILFGPANQTLPLRSEARLRCQVRG--E--GSVQW 325 (977)
Q Consensus 251 ~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~~-~~~~pp~i~~~p~~~~v~~g~~~~L~C~~~~--~--p~i~W 325 (977)
.|.|.+++.+|.|.|+ |.|.|..+.... .+.|... ....+|.+...+.......|+.++|.|.+.+ + +.|.|
T Consensus 179 ~L~I~~~~~~D~G~Y~-C~a~n~~~~~~~--~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W 255 (323)
T 2wqr_A 179 TLPVGTRDWIEGETYQ-CRVTHPHLPRAL--MRSTTKTSGPRAAPEVYAFATPEWPGSRDKRTLACLIQNFMPEDISVQW 255 (323)
T ss_dssp EEECCHHHHHTTCCEE-EEEECTTSSSCE--EEEECCCCSCCBCCEEEEEECCCCTTCTTEEEEEEEEEEEBSSCCEEEE
T ss_pred EEEECHHHccCCCCEE-EEEECCCCCCCe--eeEEEccCCCCCCCEEEEeCCChHHhcCCcEEEEEEeeeeeCCCcEEEE
Confidence 8999999999999999 999998754433 3333221 1122555443222222233999999999988 2 26999
Q ss_pred EECCEEcCCCCcE----EEecC------ceEEEeccCCCCCeEEEEEEEcCCCc
Q psy574 326 WRGEREVGSGPRV----NVTGD------GSLVLTDVTKEDSGEYTCVVKSPHGS 369 (977)
Q Consensus 326 ~~~g~~l~~~~~~----~~~~~------~sl~I~~v~~~d~G~Y~C~a~n~~G~ 369 (977)
+++|..+...... ....+ +.|.|..+...|.|.|+|.|.|..+.
T Consensus 256 ~k~g~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~ 309 (323)
T 2wqr_A 256 LHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEAAS 309 (323)
T ss_dssp EETTEECCGGGEEECCCEECSSSSEEEEEEEEEEHHHHHHCCCEEEEEECTTST
T ss_pred EECCEECCCCceeecCcccCCCCcEEEEEEEEEChHHccCCCEEEEEEEeCCCC
Confidence 9999988543111 11122 35889999888999999999998876
No 138
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A
Probab=99.88 E-value=2.8e-21 Score=195.52 Aligned_cols=182 Identities=20% Similarity=0.287 Sum_probs=155.8
Q ss_pred cCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCC---ceEEe---ccceEEEccCccCCCeEEEEEEE
Q psy574 98 VKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED---RMSVL---PSRSLQLSDVRLEDAGEYVCEAE 171 (977)
Q Consensus 98 ~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~---~~~~~---~~~~L~I~~v~~~D~G~Y~C~a~ 171 (977)
.+|.+...|.+..+.+|+++.|.|.+.|.|.+.+.|+|++..+... ++.+. ....|.|.+++.+|+|.|+|.+.
T Consensus 4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 83 (194)
T 2a38_A 4 QAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKAT 83 (194)
T ss_dssp EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEESSSBCCTTTSTTCEEEEETTEEEEEESSCCGGGCEEEEEEEE
T ss_pred CCCeEEccCCceEEECCCEEEEEEEEEecCCCEEEEEECCEEcccccCCceEEEeCCCEEEEEECCCCcccCEEEEEEEE
Confidence 4678888899999999999999999999999999999999888653 33332 23589999999999999999999
Q ss_pred eCCeeEEEEEEEEEe---eCCeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCccccEEEEEccCC
Q psy574 172 NAVGKISASATLTVQ---MAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDG 248 (977)
Q Consensus 172 n~~g~~~~~~~L~V~---~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g 248 (977)
|..+.....+.|.|. .+|.+...+....+.+|+.++|.|.+.+.|.+.+.|++++..+. ...++.+... ++
T Consensus 84 n~~~~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~-----~~~~~~~~~~-~~ 157 (194)
T 2a38_A 84 NGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQ-----SSLDFQISQE-GD 157 (194)
T ss_dssp ETTEEEEEEEEEEEECCCEEEEEEECCCCEEECTTEEEEEEEEEEEESCCEEEEEETTEECC-----CSSSEEEEEE-TT
T ss_pred cCCceEeEEEEEEEccCCCCCEEEeCCccEEEcCCCEEEEEEEEEEecCCeEEEEECCEECC-----CCCcEEEEEc-CC
Confidence 999988888899998 67788888888899999999999999999999999999998763 3345555443 34
Q ss_pred ceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEE
Q psy574 249 MNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVS 286 (977)
Q Consensus 249 ~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~ 286 (977)
.+.|.|.+++.+|+|.|+ |.|.|..|.....+.|.|+
T Consensus 158 ~~~L~i~~~~~~d~G~Y~-C~a~n~~g~~~~~~~l~V~ 194 (194)
T 2a38_A 158 LYSLLIAEAYPEDSGTYS-VNATNSVGRATSTAELLVQ 194 (194)
T ss_dssp EEEEEEEEECGGGCEEEE-EEEEETTEEEEEEEEEEEC
T ss_pred EEEEEECCCChhcCeEEE-EEEEeCCCceEEEEEEEEC
Confidence 468999999999999999 9999999998888888773
No 139
>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*
Probab=99.88 E-value=2.2e-22 Score=204.66 Aligned_cols=166 Identities=15% Similarity=0.152 Sum_probs=129.2
Q ss_pred cceEEeCCCcEEEEEEC--CCCCCCCeEEEEeCCEEee---------------cCCCceEEEec---CcEEEEcCCCCCC
Q psy574 13 KSQRVAAGDTALLECGP--PRGHPEPTLVWKKNGHPID---------------FENSKRLRLVD---GTNLAIQDSRKTD 72 (977)
Q Consensus 13 ~~~~v~~G~~v~L~C~~--~~g~P~~~v~W~k~g~~l~---------------~~~~~r~~~~~---~g~L~I~~v~~~D 72 (977)
+++++..|++++|.|.. ..+.|.+.|.|+|+|..+. .....++.+.. ...|.|.+++.+|
T Consensus 1 q~Vta~~Ge~v~L~C~~~~v~~~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D 80 (203)
T 4fa8_A 1 QAVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISH 80 (203)
T ss_dssp -CCEEETTCCEEEEEECSSTTCSTTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEETTEEEEEESSCCGGG
T ss_pred CCeEEEcCCCEEEEeeeeccCCCCCcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEcCCEEEEEEccCCHHH
Confidence 35889999999999953 2688999999999874321 01122233221 2469999999999
Q ss_pred CeEEEEEEEecCceeeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCC-----CCceEE
Q psy574 73 DGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMP-----EDRMSV 147 (977)
Q Consensus 73 ~G~Y~C~a~n~~g~~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~-----~~~~~~ 147 (977)
+|.|+|.|.|..|.. +..+.|.|..||.+...+.+..+.+|+++.|.|.+.|.|.|.|.|+++++.+. ..++.+
T Consensus 81 ~G~Y~C~a~n~~g~~-~~~~~l~V~~p~~~~~~~~~~~v~~g~~~~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~r~~~ 159 (203)
T 4fa8_A 81 DGNYLCRMKLGETEV-TKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMK 159 (203)
T ss_dssp CEEEEEEEEETTEEE-EEEEEEEEEEEEEEEEEEEECCSSCSCCEEEEEEEEEESCCEEEECCC------------CCEE
T ss_pred CeEEEEEEEcCCCcE-EEEEEEEecCCceeeecceeEEEcCCCEEEEEEEcCCCCCCEEEEEECCeeecCcccccceEEE
Confidence 999999999988874 45689999999999888888899999999999999999999999999876553 345666
Q ss_pred eccceEEE---ccCccCCCeEEEEEEEeCCeeEEE
Q psy574 148 LPSRSLQL---SDVRLEDAGEYVCEAENAVGKISA 179 (977)
Q Consensus 148 ~~~~~L~I---~~v~~~D~G~Y~C~a~n~~g~~~~ 179 (977)
..+++|.| .++..+|+|.|+|.|.|..|..++
T Consensus 160 ~~~g~l~il~i~~v~~~D~G~YtC~A~N~~G~a~~ 194 (203)
T 4fa8_A 160 EKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAHG 194 (203)
T ss_dssp CTTSCEEEEEEEEECSSCCCCEEEEEESSSCEEEE
T ss_pred eCCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEE
Confidence 67776555 689999999999999999998765
No 140
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Probab=99.88 E-value=3.6e-21 Score=198.02 Aligned_cols=187 Identities=27% Similarity=0.444 Sum_probs=156.4
Q ss_pred EcCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceEEe-----ccceEEEccC-ccCCCeEEEEEE
Q psy574 97 LVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVL-----PSRSLQLSDV-RLEDAGEYVCEA 170 (977)
Q Consensus 97 ~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~-----~~~~L~I~~v-~~~D~G~Y~C~a 170 (977)
..+|.|...|.+..+.+|+++.|.|.+.|.|.+.|.|+|++..+...+.... ....|.|.++ +.+|+|.|+|.|
T Consensus 4 ~~~P~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~a 83 (212)
T 2yd6_A 4 ETPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVA 83 (212)
T ss_dssp CEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCTTEEEEEEGGGTEEEEEECSCCTTTTCEEEEEEE
T ss_pred CCCCeEEeCcceeEEecCCeEEEEEEEeeCCCCEEEEEECCcCCCCCceeEEEEcCCCceEEEEeccCCCCCCeEEEEEE
Confidence 4678899999999999999999999999999999999999999987765543 2356999999 599999999999
Q ss_pred EeCCeeEEEEEEEEEeeC-------CeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCccccEEEE
Q psy574 171 ENAVGKISASATLTVQMA-------PIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAE 243 (977)
Q Consensus 171 ~n~~g~~~~~~~L~V~~~-------p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~ 243 (977)
.|..|.....+.|.|..+ |.+...|....+.+|+.++|.|.+.|.|.+.+.|++++..+... ....++...
T Consensus 84 ~n~~g~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~l~~~--~~~~~~~~~ 161 (212)
T 2yd6_A 84 SNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTS--NNNGRIKQL 161 (212)
T ss_dssp EETTEEEEEEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEEC--------CCEEEE
T ss_pred EcCCCcEEEEEEEEEeccCccCCCcceeecCCcceeEecCCCEEEEEEecCCCCCeEEEEECCccccCc--CCCceEEEE
Confidence 999999888999999854 67777888889999999999999999999999999999876432 123455544
Q ss_pred EccCCceEEEEeecccCCCCeEEEEEEEcCCCcee-EEEEEEEEC
Q psy574 244 ITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDL-ARASLTVSG 287 (977)
Q Consensus 244 ~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~-~~~~l~V~~ 287 (977)
.. .+...|.|.+++.+|+|.|+ |.|.|..|... ..+.|.|..
T Consensus 162 ~~-~~~~~L~i~~~~~~d~G~Y~-C~a~N~~G~~~s~~a~l~~~~ 204 (212)
T 2yd6_A 162 RS-ESIGALQIEQSEESDQGKYE-CVATNSAGTRYSAPANLYVRG 204 (212)
T ss_dssp EE-TTEEEEEECSCCGGGCEEEE-EEEEETTEEEECCCEEEEEEC
T ss_pred ec-CCeEEEEEcCCCcccCEEEE-EEEECCCCccccccccEEEEe
Confidence 32 23469999999999999999 99999999874 457788876
No 141
>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*
Probab=99.88 E-value=7.5e-22 Score=228.89 Aligned_cols=264 Identities=17% Similarity=0.257 Sum_probs=180.8
Q ss_pred CCCceEEeCCCeEEEEEEecccC--ceEEEEEECC--ee---C---------------CCCceEEec-----cceEEEcc
Q psy574 105 GPKDTTVSASSIIVFECSVGGDA--VLTVHWKRLG--SA---M---------------PEDRMSVLP-----SRSLQLSD 157 (977)
Q Consensus 105 ~p~~~~v~~G~~v~l~C~v~g~p--~~~i~W~k~~--~~---l---------------~~~~~~~~~-----~~~L~I~~ 157 (977)
.|....+.+|++++|.|.+.+.+ .+.+.|+|+. .. + ..+|+.+.. ..+|.|.+
T Consensus 6 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~ 85 (457)
T 1hzh_H 6 QSGAEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRS 85 (457)
T ss_dssp ECCCEEECTTCCEEECEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred cCCceEEcCCCCEEEEEEecCccccCcEEEEEEeCCCCCcEEEEEEecCCCceecCccccCceEEEEeCCCCEEEEEECC
Confidence 34567899999999999998775 6789999852 21 1 124665543 24799999
Q ss_pred CccCCCeEEEEEEEeCCe------------eEEEEEEEEEee----CCeEEecCCCcEEeeCCeEEEEEEEecC-CC-Ce
Q psy574 158 VRLEDAGEYVCEAENAVG------------KISASATLTVQM----APIVRERPSDLRLEVGRDAVFLCGIEGS-PP-PS 219 (977)
Q Consensus 158 v~~~D~G~Y~C~a~n~~g------------~~~~~~~L~V~~----~p~~~~~p~~~~v~~G~~v~L~C~~~g~-p~-~~ 219 (977)
++.+|+|.|+|.+.|..| .....+.|.|.. +|.+...+....+.+|+.++|.|.+.+. |. +.
T Consensus 86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~ 165 (457)
T 1hzh_H 86 LRSADTAVYYCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVT 165 (457)
T ss_dssp CCGGGCEEEEEEECCCCCSSCCTTTTCSCCBCCCCEEEEECSCCCBCCEEEEECCCSCCCTTCCEEEEEEEESBBSCCCE
T ss_pred CCcccCEEEEEEEecCCccccccccccccceECCcEEEEecCCCCCCCeEEecCccccccCCCcEEEEEEEeEEeCCCeE
Confidence 999999999999998765 233456777764 5666655555567899999999999987 64 79
Q ss_pred EEEEEcCeeeeecC----CCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEECCC------
Q psy574 220 TFWMLEGNRSLIYP----GDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPD------ 289 (977)
Q Consensus 220 i~W~~~g~~~~~~~----~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~~~------ 289 (977)
+.|++++..+.... ....+++... +.|.|.+++.+| |.|+ |.|.|..+.......+.+....
T Consensus 166 v~W~k~~~~~~~~~~~~~~~~~~~~~~~------s~L~i~~~~~~d-G~Y~-C~a~n~~~~~~~~~~v~~~~~~~~~~~~ 237 (457)
T 1hzh_H 166 VSWNSGALTSGVHTFPAVLQSSGLYSLS------SVVTVPSSSLGT-QTYI-CNVNHKPSNTKVDKKAEPKSCDKTHTCP 237 (457)
T ss_dssp EEETTTTBCTTEEEEEEEECTTSCEEEE------EEEEECSGGGGT-SCCE-EEEEEGGGTEEEEEECCCCCSCSSCSCC
T ss_pred EEEEeCCEeccceEcCceECCCCCEEEE------EEEEecccccCC-ceEE-EEEEeCCCCcceeEEecccCCCcccccC
Confidence 99999986431100 0011222221 379999999999 9999 9999988776555554443210
Q ss_pred ------CCCCCeE-EeCCCcee-ecCCCcEEEEEEEcc-Cc-----eEEEEECCEEcCCCCc--EEEecCceEEEecc--
Q psy574 290 ------PNPPPVI-LFGPANQT-LPLRSEARLRCQVRG-EG-----SVQWWRGEREVGSGPR--VNVTGDGSLVLTDV-- 351 (977)
Q Consensus 290 ------~~~pp~i-~~~p~~~~-v~~g~~~~L~C~~~~-~p-----~i~W~~~g~~l~~~~~--~~~~~~~sl~I~~v-- 351 (977)
...+|.+ ..+|.... +..|+.+.|.|.+.+ +| .|.|++++..+..... .....++.+.+...
T Consensus 238 ~~~~~~~~~~p~v~~~~p~~~~~~~~G~~v~L~C~~~g~~p~p~~~~i~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~ 317 (457)
T 1hzh_H 238 PCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLT 317 (457)
T ss_dssp SCCCCCCSSSCEEEEECCCHHHHHCTTSCCCEEEEEECCCTTCCCCEEEEEETTEEECCCEEEEEEECTTSCEEEEEEEC
T ss_pred CCCCccccCCceEEeECcCchhhcccCCceEEEEEEEcccCCCCceEEEEEeCCccccccccccceecCCCcEEEEEEEE
Confidence 0114554 55555443 678999999999999 33 8999999988754321 12234566665532
Q ss_pred -CCCC---CeEEEEEEEcCCCceEEEEEE
Q psy574 352 -TKED---SGEYTCVVKSPHGSASWSASL 376 (977)
Q Consensus 352 -~~~d---~G~Y~C~a~n~~G~~~~s~~l 376 (977)
...| .|.|+|.|.|..+.......+
T Consensus 318 i~~~d~~d~G~Y~C~a~n~~~~~~~~~~v 346 (457)
T 1hzh_H 318 VLHQDWLNGKEYKCKVSNKALPAPIEKTI 346 (457)
T ss_dssp CCHHHHHHTCCEEEEEECTTSSSCEEEEE
T ss_pred ECHHHccCCCcEEEEEeCCCCCCcceEEE
Confidence 2445 999999999876655434333
No 142
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*
Probab=99.88 E-value=8.3e-22 Score=203.52 Aligned_cols=182 Identities=30% Similarity=0.510 Sum_probs=151.8
Q ss_pred cccccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCC--CceEEEecCcEE----EEcCCCCCCCeEE
Q psy574 3 LLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFEN--SKRLRLVDGTNL----AIQDSRKTDDGRY 76 (977)
Q Consensus 3 ~l~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~--~~r~~~~~~g~L----~I~~v~~~D~G~Y 76 (977)
...|.|...|.++.+.+|++++|.|.+ .+.|.+.|.|+|||..+.... ..++.+. ++.+ .|.+++.+|+|.|
T Consensus 7 ~~~P~i~~~p~~~~v~~G~~v~L~C~~-~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~-~~~~~~~l~i~~v~~~d~G~Y 84 (217)
T 2vr9_A 7 YQSPRIIEHPTDLVVKKNEPATLNCKV-EGKPEPTIEWFKDGEPVSTNEKKSHRVQFK-DGALFFYRTMQGKKEQDGGEY 84 (217)
T ss_dssp CCCCEEEECCCCEEECTTSCEEECCEE-ECSSCCEEEEEETTEECCCSSSSSSEEECT-TSCEEESSCCBSSSCBCCEEE
T ss_pred cCCCEEecCCCceEEeCCCcEEEEEEc-CCCCCCeEEEEECCcCccCCCccceeEEec-CCceEEEEEeccCCcccCceE
Confidence 456889999999999999999999999 788999999999999986432 2344433 4444 6889999999999
Q ss_pred EEEEEecCceeeeEeEEEEEEc-CCeEEeCCCceEEeCCCeEEEEEEe-cccCceEEEEEECCeeCC---------CCce
Q psy574 77 QCVVKNVAGTRESTDAVLRVLV-KPYIIRGPKDTTVSASSIIVFECSV-GGDAVLTVHWKRLGSAMP---------EDRM 145 (977)
Q Consensus 77 ~C~a~n~~g~~~s~~~~l~V~~-~P~~~~~p~~~~v~~G~~v~l~C~v-~g~p~~~i~W~k~~~~l~---------~~~~ 145 (977)
+|.+.|..|...+..+.|.|.. +|.+...|....+.+|+.+.|.|.+ .|.|.+.+.|+|++..+. ..++
T Consensus 85 ~C~~~n~~g~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~ 164 (217)
T 2vr9_A 85 WCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRV 164 (217)
T ss_dssp EEEEEETTEEEECCCEEEEECEECCSCSBCCCCEEECTTSCEEECCBCCCEESCCEEEEEETTEEECCCCCC---CCCSE
T ss_pred EEEEecCCCccccccceEEEEEeCCCcEECCCccEEcCCCeEEEEEECCCCCCCCeEEEEECCcCCCcccccccccCCcE
Confidence 9999998887666667788775 5677777888899999999999999 899999999999998876 2455
Q ss_pred EEeccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEEe
Q psy574 146 SVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQ 186 (977)
Q Consensus 146 ~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~ 186 (977)
.+..++.|.|.++..+|+|.|+|.|.|..|.....+.+.+.
T Consensus 165 ~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~~lv~ 205 (217)
T 2vr9_A 165 RIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIV 205 (217)
T ss_dssp EEETTTEEEESSCCSTTCEEEEEEEEETTEEEECCCEEEEE
T ss_pred EecCCCcEEEeeCCHHHCeEEEEEEEcccceeccccEEEEE
Confidence 55677899999999999999999999999987766555554
No 143
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Probab=99.88 E-value=2.3e-21 Score=196.59 Aligned_cols=180 Identities=19% Similarity=0.359 Sum_probs=150.7
Q ss_pred ccccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCc---EEEEcCCCCCCCeEEEEEE
Q psy574 4 LREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGT---NLAIQDSRKTDDGRYQCVV 80 (977)
Q Consensus 4 l~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g---~L~I~~v~~~D~G~Y~C~a 80 (977)
-.|.|...|.++.+.+|+.++|.|.+ .+.|.+.+.|+|++..+... .++.+..++ +|.|.+++.+|+|.|+|.+
T Consensus 6 ~~P~~~~~~~~~~v~~G~~v~l~C~~-~~~p~~~v~W~~~~~~~~~~--~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 82 (197)
T 3lcy_A 6 EAPGIRKEMKDVTTKLGEAAQLSCQI-VGRPLPDIKWYRFGKELIQS--RKYKMSSDGRTHTLTVMTEEQEDEGVYTCIA 82 (197)
T ss_dssp EEEEEEECCCCEEEETTSEEEEEEEE-EEESCCEEEEEETTEEECCC--SSEEEEESSSEEEEEEECCSGGGCEEEEEEE
T ss_pred CCCcccccCCceEEeCCCcEEEEEEE-ecCCCCEEEEEECCEECCCC--ccEEEEeCCCEEEEEEecCCccCCEEEEEEE
Confidence 46788899999999999999999999 78899999999999999543 455555454 7999999999999999999
Q ss_pred EecCceeeeEeEEEEEEcCCeEEeC---CCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCC-ceEEecc---ceE
Q psy574 81 KNVAGTRESTDAVLRVLVKPYIIRG---PKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED-RMSVLPS---RSL 153 (977)
Q Consensus 81 ~n~~g~~~s~~~~l~V~~~P~~~~~---p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~-~~~~~~~---~~L 153 (977)
.|..|.. ...+.|.|..+|.+... +....+.+|+.+.|.|.+.|.|.+.+.|++++..+... ++.+... ..|
T Consensus 83 ~n~~~~~-~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L 161 (197)
T 3lcy_A 83 TNEVGEV-ETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHL 161 (197)
T ss_dssp ECSSCEE-EEEEEEEEEEEEEECTTSCCCSEEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEECSSEEEE
T ss_pred ECCCCce-eEEEEEEEEcCCCCCCCccCCcceeecCCCeEEEEEEEeeeeCCeeEEeECCEECCCCCceEEEEcCCEEEE
Confidence 9888764 45578888877766543 35567889999999999999999999999999988654 4444333 689
Q ss_pred EEccCcc-CCCeEEEEEEEeCCeeEEEEEEEEEee
Q psy574 154 QLSDVRL-EDAGEYVCEAENAVGKISASATLTVQM 187 (977)
Q Consensus 154 ~I~~v~~-~D~G~Y~C~a~n~~g~~~~~~~L~V~~ 187 (977)
.|.++.. +|+|.|+|.|.|..|..+..+.|.|..
T Consensus 162 ~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~ 196 (197)
T 3lcy_A 162 VMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQD 196 (197)
T ss_dssp EESSCCHHHHCEEEEEEEECSSCEEEEEEEEEEEC
T ss_pred EEccccchhhCceEEEEEEcCcCceEEEEEEEEec
Confidence 9999994 899999999999999999999988863
No 144
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}
Probab=99.88 E-value=1.7e-21 Score=201.43 Aligned_cols=171 Identities=23% Similarity=0.322 Sum_probs=148.5
Q ss_pred cccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecC
Q psy574 5 REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVA 84 (977)
Q Consensus 5 ~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~ 84 (977)
.+.|.+.|.++.+.+|++++|.|.+ .+.|.+.|.|+|++..+... .++.|.|.+++.+|+|.|+|.+.|..
T Consensus 18 ~~~i~~~p~~~~v~~G~~v~L~C~~-~~~p~~~v~W~~~~~~~~~~--------~~~~L~i~~v~~~d~G~Y~C~~~n~~ 88 (218)
T 3k0w_A 18 GSKITVNPESKAVLAGQFVKLCCRA-TGHPFVQYQWFKMNKEIPNG--------NTSELIFNAVHVKDAGFYVCRVNNNF 88 (218)
T ss_dssp -CCEEECCCCEEEETTSBEEEECEE-TTTTSSEEEEEETTEECTTC--------CSSEEEETTCCGGGCEEEEEEEECTT
T ss_pred CCEEEECCCCeEEeCCCcEEEEeee-cCCCCCEEEEEECCEECCCC--------CCCEEEEccCChhhCeEeEEEEEcCC
Confidence 3678889999999999999999999 88999999999999998432 25789999999999999999999988
Q ss_pred ceeeeEeEEEEEEcC---------------CeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceEEec
Q psy574 85 GTRESTDAVLRVLVK---------------PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLP 149 (977)
Q Consensus 85 g~~~s~~~~l~V~~~---------------P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~~ 149 (977)
|...+..+.|.|... |.+...|....+.+|+.+.|.|.+.|.|.+.+.|++++..+... .
T Consensus 89 ~~~~s~~~~l~V~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~~~~~~~~-----~ 163 (218)
T 3k0w_A 89 TFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHE-----T 163 (218)
T ss_dssp CCEECCCEEEEEECCCGGGCTTCCSBCCSSCEEEECCCCEEECTTCCEEEECEEEBSSCCEEEEEETTEECTTC-----C
T ss_pred CCceeeEEEEEEEccCcccccccccccCCCceEEECCCceeecCCCcEEEEEEecccCCCeEEEEECCEECCCC-----C
Confidence 866677788888865 67888888899999999999999999999999999999988754 3
Q ss_pred cceEEEccCccCCCeEEEEEEEeCCee-EEEEEEEEEeeCC
Q psy574 150 SRSLQLSDVRLEDAGEYVCEAENAVGK-ISASATLTVQMAP 189 (977)
Q Consensus 150 ~~~L~I~~v~~~D~G~Y~C~a~n~~g~-~~~~~~L~V~~~p 189 (977)
...|.|.++..+|+|.|+|.|.|..|. .+..+.|.|...+
T Consensus 164 ~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~~ 204 (218)
T 3k0w_A 164 KKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELN 204 (218)
T ss_dssp SSEEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEECC--
T ss_pred CCEEEEeecChhcCEEEEEEEEcCCCCceeeeEEEEEeCCc
Confidence 468999999999999999999998887 5667888887533
No 145
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A
Probab=99.87 E-value=2.7e-21 Score=196.21 Aligned_cols=183 Identities=22% Similarity=0.297 Sum_probs=154.2
Q ss_pred cCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCC--ceEEe--ccc--eEEEccCccCCCeEEEEEEE
Q psy574 98 VKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED--RMSVL--PSR--SLQLSDVRLEDAGEYVCEAE 171 (977)
Q Consensus 98 ~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~--~~~~~--~~~--~L~I~~v~~~D~G~Y~C~a~ 171 (977)
.+|.|...|.+..+.+|+++.|.|.+.+.|.+.+.|+|++..+... ++.+. .++ .|.|.+++.+|+|.|+|.+.
T Consensus 3 ~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 82 (197)
T 2j8h_A 3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRAT 82 (197)
T ss_dssp CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEECSCCGGGCSEEEEEEE
T ss_pred CCCEEEEcCCccEEcCCCEEEEEEEEeecCCCEEEEEECCEECccCCCcEEEEEcCCCEEEEEECcCCHHhCEEEEEEEE
Confidence 4788999999999999999999999999999999999999988643 44433 233 89999999999999999999
Q ss_pred eCCeeEEEEEEEEEeeCCeEEecC-----CCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCccccEEEEEcc
Q psy574 172 NAVGKISASATLTVQMAPIVRERP-----SDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITS 246 (977)
Q Consensus 172 n~~g~~~~~~~L~V~~~p~~~~~p-----~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~ 246 (977)
|..|..+..+.|.|..+|.+...+ ....+.+|+.++|.|.+.+.|.+.+.|++++..+. ...++.+...
T Consensus 83 n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~-----~~~~~~~~~~- 156 (197)
T 2j8h_A 83 NQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLID-----NNGHYQVIVT- 156 (197)
T ss_dssp ETTEEEEEEEEEEEEEEEEECCSSCBTTBEEEEEETTCCCEEEEEEEEESCCEEEEEESSCEEC-----SSSSCEEEEC-
T ss_pred ECCCceeEEEEEEEcCCCcCCCCccccccCeEEEeCCCEEEEEEEEEecCCCcEEEEECCEEee-----cCCCEEEEEc-
Confidence 999999999999999877764432 34578889999999999999999999999998764 3345555443
Q ss_pred CCceEEEEee-cccCCCCeEEEEEEEcCCCceeEEEEEEEEC
Q psy574 247 DGMNLLKIQN-VSRTAAPLIILCLGVNAAGSDLARASLTVSG 287 (977)
Q Consensus 247 ~g~s~L~I~~-v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~ 287 (977)
.+...|.|.+ +..+|+|.|+ |.|.|..|.....+.|.|.+
T Consensus 157 ~~~~~L~i~~~~~~~d~G~Y~-C~a~N~~g~~~~~~~l~V~d 197 (197)
T 2j8h_A 157 RSFTSLVFPNGVERKDAGFYV-VCAKNRFGIDQKTVELDVAD 197 (197)
T ss_dssp SSEEEEECTTCCCGGGCEEEE-EEEEETTEEEEEEEEEEEEC
T ss_pred CCceEEEEeCCCCcccCEeEE-EEEEeCCCcEeEEEEEEEeC
Confidence 2346999999 9999999999 99999999998888888863
No 146
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Probab=99.87 E-value=2e-21 Score=197.69 Aligned_cols=181 Identities=28% Similarity=0.426 Sum_probs=146.6
Q ss_pred ccce-ecccceEEeCCCcEEEEEECCCCCCC-CeEEEEeCCEEeecCCCceE-EEecCcEEEEcCCCCCCCeEEEEEEEe
Q psy574 6 EEFR-VQPKSQRVAAGDTALLECGPPRGHPE-PTLVWKKNGHPIDFENSKRL-RLVDGTNLAIQDSRKTDDGRYQCVVKN 82 (977)
Q Consensus 6 ~~~~-~~p~~~~v~~G~~v~L~C~~~~g~P~-~~v~W~k~g~~l~~~~~~r~-~~~~~g~L~I~~v~~~D~G~Y~C~a~n 82 (977)
+.|. ..+.++.+.+|+.++|.|.+..+.|. +.|.|+|++..+....+.+. ....+++|.|.+++.+|+|.|+|.+.+
T Consensus 8 ~~~~~~~~~~~~v~~G~~v~L~C~~~~~~p~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~ 87 (201)
T 3s97_C 8 DPFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSS 87 (201)
T ss_dssp CCCCSSCCCCEEEETTCCEEECCCCCSEESSCCEEEEEESSTTCBCCCSSSEEECTTTCCEEESSCCGGGCEEEEEEEEE
T ss_pred CccCcCCCceEEEECCCCEEEeccccccCCCceEEEEEECCceeeeeeCCCeEEEcCCCeEEECcCCcccCeEEEEEEEe
Confidence 3444 45578999999999999993378888 99999999988854333343 444578899999999999999999999
Q ss_pred cCceeee--EeEEEEEE-------cCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceEEeccceE
Q psy574 83 VAGTRES--TDAVLRVL-------VKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSL 153 (977)
Q Consensus 83 ~~g~~~s--~~~~l~V~-------~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~~~~~L 153 (977)
..+.... ..+.+.+. .+|.+...+....+.+|+.+.|.|.+.|.|.+.+.|++++..+.........+..|
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~L 167 (201)
T 3s97_C 88 PSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSGAVL 167 (201)
T ss_dssp GGGTEEEECCCEEEEEECCSSCCCEEEEEEEECCCEEEETTCCEEEEEEEEEESCCEEEEEETTBCCCTTCEEETTTTEE
T ss_pred cCCCcchhhcccceeeccccccCCCCCceEecCCceEEecCCcEEEEEEccCCCCCceEEEeCCCcCCCceeecCCCCEE
Confidence 7654432 33444443 35666666668899999999999999999999999999999887654444567899
Q ss_pred EEccCccCCCeEEEEEEEeCCeeEEEEEEEEEe
Q psy574 154 QLSDVRLEDAGEYVCEAENAVGKISASATLTVQ 186 (977)
Q Consensus 154 ~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~ 186 (977)
.|.++..+|+|.|+|.|.|..|..+..+.|.|.
T Consensus 168 ~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 200 (201)
T 3s97_C 168 KIFNIQLEDEGIYECEAENIRGKDKHQARIYVQ 200 (201)
T ss_dssp EECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred EEccCChhhCEEEEEEEEecCCceeeeEEEEEe
Confidence 999999999999999999999999999999885
No 147
>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A
Probab=99.87 E-value=2.4e-21 Score=225.71 Aligned_cols=251 Identities=15% Similarity=0.216 Sum_probs=169.7
Q ss_pred eCCCcEEEEEECCCCCCC-C-eEEEEeCCEEeecC--------CCceEEEecCcEEEEcCCCCCCCeEEEEEEEecCcee
Q psy574 18 AAGDTALLECGPPRGHPE-P-TLVWKKNGHPIDFE--------NSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTR 87 (977)
Q Consensus 18 ~~G~~v~L~C~~~~g~P~-~-~v~W~k~g~~l~~~--------~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~ 87 (977)
.+|+.++|.|.+....|. + .|.|+|++..+... .++++.+ .+.|.|..++.+|+|.|+|.|.|..+..
T Consensus 139 ~~g~~v~L~C~~~g~~P~~p~~v~W~~~~~~~~~~~~~~~~~~~~g~~~~--~s~L~i~~~~~~d~g~Y~C~a~n~~~~~ 216 (475)
T 1iga_A 139 QPDGNVVIACLVQGFFPQEPLSVTWSESGQGVTARNFPPSQDASGDLYTT--SSQLTLPATQCLAGKSVTCHVKHYTNPS 216 (475)
T ss_pred CCCCeEEEEEEEeeecCCCceEEEEcCCCcccceEeCCceecCCCCcEEE--EEEEEechhHcCCCceEEEEEEECCCCc
Confidence 689999999999433466 5 99999998643211 1122222 2358999999999999999999987643
Q ss_pred eeEeEEEEEE------------------cCCeE-EeCCCceEEeCCCeEEEEEEecccCc---eEEEEEECCeeCCCC--
Q psy574 88 ESTDAVLRVL------------------VKPYI-IRGPKDTTVSASSIIVFECSVGGDAV---LTVHWKRLGSAMPED-- 143 (977)
Q Consensus 88 ~s~~~~l~V~------------------~~P~~-~~~p~~~~v~~G~~v~l~C~v~g~p~---~~i~W~k~~~~l~~~-- 143 (977)
.+..+.|.|. .+|.+ ...|....+.+|+++.|.|.+.|.++ +.|.| ++..+...
T Consensus 217 ~~~~v~l~V~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~G~~v~L~C~~~g~~p~~~~~i~W--~~~~~~~~~~ 294 (475)
T 1iga_A 217 QDVTVPCPVPSTPPTPSPSTPPTPSPSCCHPRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTW--TPSSGKSAVQ 294 (475)
T ss_pred eeeeEecccccCcccccccccccCCCCCCCcEEEEcCCChHHhccCCceEEEEEEEcccCCCceEEEE--CCCCcCCccc
Confidence 3333443331 24544 44444445689999999999987644 69999 44333211
Q ss_pred -ce------EEeccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEE---EeeCCeEEecCCC-cEEeeCCeEEEEEEE
Q psy574 144 -RM------SVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLT---VQMAPIVRERPSD-LRLEVGRDAVFLCGI 212 (977)
Q Consensus 144 -~~------~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~---V~~~p~~~~~p~~-~~v~~G~~v~L~C~~ 212 (977)
.. .....+.|.|.++..+|+|.|+|.|.|..+.......|. +..+|.+...+.. ..+.+|+.++|.|.+
T Consensus 295 ~~~~~~~~g~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~P~v~~~~~~~~~v~~g~~~~L~C~~ 374 (475)
T 1iga_A 295 GPPERDLCGCYSVSSVLPGCAEPWNHGKTFTCTAAYPESKTPLTATLSKSGNTFRPEVHLLPPPSEELALNELVTLTCLA 374 (475)
T ss_pred cCceECCCCCEEEEEEEEEchHHhccCCcEEEEEEcCCCCCceEEEeecCCCCCCCeEEEECCChHHhccCCceEEEEEE
Confidence 00 011345799999999999999999999888754444553 3577877665544 357899999999999
Q ss_pred ecCCC--CeEEEEEcCeeeeecCCCccccEEEEEc---cCCc----eEEEEeecccCCCCeEEEEEEEcCCCc
Q psy574 213 EGSPP--PSTFWMLEGNRSLIYPGDRVDNIQAEIT---SDGM----NLLKIQNVSRTAAPLIILCLGVNAAGS 276 (977)
Q Consensus 213 ~g~p~--~~i~W~~~g~~~~~~~~~~~~~~~~~~~---~~g~----s~L~I~~v~~~d~G~Y~~C~a~n~~g~ 276 (977)
.|.++ +.|.|+|+|..+.... ......... .+|. +.|.|......|.|.|+ |.|.|....
T Consensus 375 ~g~~P~~~~v~W~k~g~~l~~~~---~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~~~g~Yt-C~a~n~~l~ 443 (475)
T 1iga_A 375 RGFSPKDVLVRWLQGSQELPREK---YLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFS-CMVGHEALP 443 (475)
T ss_pred eeeECCCCEEEEEECCEECCCCc---eeecccccccCCCCCcEEEEEEEEEChHHhcCCCEEE-EEEEcCCCC
Confidence 98643 4899999998763210 000000111 1221 36888888888999999 999998654
No 148
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A
Probab=99.87 E-value=6.1e-21 Score=196.31 Aligned_cols=181 Identities=29% Similarity=0.577 Sum_probs=155.6
Q ss_pred cCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCC--CCceEEe--cc--ceEEEccCcc-CCCeEEEEEE
Q psy574 98 VKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMP--EDRMSVL--PS--RSLQLSDVRL-EDAGEYVCEA 170 (977)
Q Consensus 98 ~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~--~~~~~~~--~~--~~L~I~~v~~-~D~G~Y~C~a 170 (977)
.+|.|...|.+..+.+|+++.|.|.+.|.|.+.|.|+|++..+. ..++.+. .+ ..|.|.+++. +|+|.|+|.+
T Consensus 5 ~pP~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~~ 84 (212)
T 2yd1_A 5 HPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVA 84 (212)
T ss_dssp CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCTTSTTEEEEEETTTEEEEEESSCCTTTTCSEEEEEE
T ss_pred CCCEEEcCCCceEEecCCEEEEEEEEccCCCCeEEEEECCEECCCCcceeEEEEcCCCeEEEEEEecCCCCcCceEEEEE
Confidence 57899999999999999999999999999999999999999885 4555553 22 5899999999 9999999999
Q ss_pred EeCCee-EEEEEEEEEeeC-------CeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCccccEEE
Q psy574 171 ENAVGK-ISASATLTVQMA-------PIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQA 242 (977)
Q Consensus 171 ~n~~g~-~~~~~~L~V~~~-------p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~ 242 (977)
.|..|. .+..+.|.|..+ |.+...+....+.+|+.++|.|.+.+.|.+.+.|++++..+.. ...++..
T Consensus 85 ~n~~g~~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~----~~~~~~~ 160 (212)
T 2yd1_A 85 ENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDM----SNPRYSL 160 (212)
T ss_dssp ECSSSCEEEEEEEEEEECTTCSCTTCCEEEECCCCEEEETTCCEEECCEEECSSCCEEEEEETTEECCT----TSTTEEE
T ss_pred EeCCCCeEEeeEEEEEecccCCCCCCCeeEeCCCceEeecCCeEEEEEEeccCCCCeEEEEECCeEccc----CCCeEEc
Confidence 999988 788899999865 7788888888999999999999999999999999999987642 2334433
Q ss_pred EEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEE-EEEEEECC
Q psy574 243 EITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLAR-ASLTVSGP 288 (977)
Q Consensus 243 ~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~-~~l~V~~~ 288 (977)
. ++ .|.|.+++.+|+|.|+ |.|.|..|..... +.|.|+..
T Consensus 161 ~---~~--~L~i~~v~~~d~G~Y~-C~a~N~~G~~~s~~~~l~V~~~ 201 (212)
T 2yd1_A 161 K---DG--FLQIENSREEDQGKYE-CVAENSMGTEHSKATNLYVKVR 201 (212)
T ss_dssp E---TT--EEEECSCCGGGCEEEE-EEEEETTEEEECCCEEEEEEC-
T ss_pred c---CC--eEEEccCChhhCEEEE-EEeecCCCceeEEEEEEEEEec
Confidence 3 34 9999999999999999 9999999988765 79999873
No 149
>3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural protein; 1.65A {Homo sapiens}
Probab=99.87 E-value=9.3e-21 Score=192.25 Aligned_cols=183 Identities=19% Similarity=0.201 Sum_probs=150.7
Q ss_pred CceEEEEEeeEeCCCeEEEEEEec--C-CCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEe
Q psy574 544 GSLIELTEVKPMTSTSVKLTWEIL--N-TDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPF 620 (977)
Q Consensus 544 ~~~~~~l~~~~~~~tsv~lsW~~p--~-~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~ 620 (977)
+.+|.++++...+.++|.|+|++| . +..+.+|.|+|+..+ ...|...... ...+++.+.+|.|++.|.|+|+|.
T Consensus 6 P~~P~~l~~~~~~~~sv~l~W~~p~~~~~~~i~~Y~v~~~~~~-~~~~~~~~~~--~~~~~~~~~~L~p~t~Y~~~V~a~ 82 (197)
T 3lpw_A 6 PGPPQDLKVKEVTKTSVTLTWDPPLLDGGSKIKNYIVEKREST-RKAYSTVATN--CHKTSWKVDQLQEGCSYYFRVLAE 82 (197)
T ss_dssp CCCCEEEEEEEECSSCEEEEEECCSCCTTSCCCEEEEEEEETT-CSSCEEEEEE--ECSSEEEECCCCTTCEEEEEEEEE
T ss_pred CCCCCCcEEEEecCCEEEEEEcCCccCCCCcccEEEEEEEECC-CCccEEeecC--CCccEEEEcCCCCCCEEEEEEEEE
Confidence 344578999999999999999998 3 335899999999876 4566655443 467899999999999999999999
Q ss_pred ecceeCCCCCceEEeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCC-eeeeEEEEEEEecCCcceEEEEecCCcC
Q psy574 621 FGSVDGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHN-GVIRTYQIIVGGGNNSALINMTVSASTP 699 (977)
Q Consensus 621 n~~g~g~~s~~~~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~n-g~i~~Y~v~~~~~~~~~~~~~~~~~~~~ 699 (977)
|..|.+.++....+.|...+|. +|.++++...+.+++.|+|++| ...+ +.+.+|.|+|+..+...+.. ......+
T Consensus 83 ~~~g~~~~s~~~~~~t~~~~p~-~p~~~~~~~~~~~~v~l~W~~p--~~~~~~~i~~Y~v~~~~~~~~~~~~-~~~~~~~ 158 (197)
T 3lpw_A 83 NEYGIGLPAETAESVKASERPL-PPGKITLMDVTRNSVSLSWEKP--EHDGGSRILGYIVEMQTKGSDKWAT-CATVKVT 158 (197)
T ss_dssp ETTEECCCEECSSCEESCCCCC-CCSCEEEEEECSSCEEEEECCC--SCCTTSCCCEEEEEEEETTCSCCEE-EEEESSS
T ss_pred cCccccCCCCCccceecCCCCC-CCcccEEEeccCCeEEEEecCC--CcCCCCcccEEEEEEEeCCCCceEE-eeccccc
Confidence 9999998887777778887776 8889999888999999999998 4444 48999999999865333322 2344688
Q ss_pred eEEecCCCCCceEEEEEEEEcCCCcCCCCCceEE
Q psy574 700 TLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALL 733 (977)
Q Consensus 700 ~~~l~~L~p~t~Y~~~V~A~~~~G~g~~S~~~~~ 733 (977)
++++.+|+|++.|.|+|+|.|.+|.|++|.+...
T Consensus 159 ~~~~~~L~p~t~Y~~~V~A~n~~G~s~~S~~s~~ 192 (197)
T 3lpw_A 159 EATITGLIQGEEYSFRVSAQNEKGISDPRQLSVP 192 (197)
T ss_dssp EEEECCCCTTCEEEEEEEEEETTEECCCEECSSC
T ss_pred EEEeCCcCCCCEEEEEEEEEeCCccCCCccCccc
Confidence 9999999999999999999999999998876533
No 150
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*
Probab=99.87 E-value=1.9e-21 Score=198.57 Aligned_cols=169 Identities=19% Similarity=0.301 Sum_probs=138.7
Q ss_pred ccccceecccceEEeCCCcEEEEEECCCCCCCCe-EEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEe
Q psy574 4 LREEFRVQPKSQRVAAGDTALLECGPPRGHPEPT-LVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKN 82 (977)
Q Consensus 4 l~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~-v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n 82 (977)
-+|.+.+.|.+..+.+|++++|.|.+ .+.|.+. |.|+|||..+... .+.|.|.+++.+|+|.|+|.+.|
T Consensus 6 p~p~i~~~p~~~~v~~G~~v~L~C~~-~~~p~~~~v~W~k~g~~l~~~---------~~~L~i~~v~~~D~G~Y~C~a~n 75 (204)
T 3sgj_C 6 PKAVVFLEPQWYRVLEKDSVTLKCQG-AYSPEDQSTQWFHNESLISSQ---------ASSYFIDAATVDDSGEYRCQTQL 75 (204)
T ss_dssp CBCEEEEESCCSEEETTCCEEEEEEC-CSSSSCCCEEEEETTEEESCC---------SSEEEESSCCGGGCEEEEEEETT
T ss_pred CCCeEEEcCCCeEEECCCCEEEEEcC-CCCCCCcEEEEEECCEEcccC---------ccEEEEecccccCCEEEEEEeCC
Confidence 46788899988999999999999999 6777665 9999999998432 27899999999999999999987
Q ss_pred cCceeeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEeccc-CceEEEEEECCeeCCCCceEEeccceEEEccCccC
Q psy574 83 VAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGD-AVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLE 161 (977)
Q Consensus 83 ~~g~~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~-p~~~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~ 161 (977)
. ..+..+.|.|..+|.+...+. ..+.+|++++|.|.+.+. |.+.|.|+|++..+.. ...+..|.|.+++.+
T Consensus 76 ~---~~s~~~~l~V~~~p~~~~~~~-~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~----~~~~~~L~i~~v~~~ 147 (204)
T 3sgj_C 76 S---TLSDPVQLEVHIGWLLLQAPR-WVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKY----FHHNSDFYIPKATLK 147 (204)
T ss_dssp S---BCCCCEEEEEECSSEEEECSC-SEEETTCCEEEEEEEGGGCCCEEEEEEETTEEEEE----EEECCCEEESSCCGG
T ss_pred C---cccccEEEEEecCceEecCCc-eeEeCCCcEEEEEEecCCCCCceEEEEECCcEeec----ccCCceEEECcCCcc
Confidence 4 335668899998888777665 778899999999999554 6789999999987632 224678999999999
Q ss_pred CCeEEEEEEEeC-CeeEEEEEEEEEeeCCe
Q psy574 162 DAGEYVCEAENA-VGKISASATLTVQMAPI 190 (977)
Q Consensus 162 D~G~Y~C~a~n~-~g~~~~~~~L~V~~~p~ 190 (977)
|+|.|+|.|.|. .+..+..+.|.|..+|.
T Consensus 148 D~G~Y~C~a~n~~~~~~s~~~~l~V~~~~~ 177 (204)
T 3sgj_C 148 DSGSYFCRGLVGSKNVSSETVQITITQGLA 177 (204)
T ss_dssp GCEEEEEEEEETTEEEECCCEEEEEEC---
T ss_pred cCEEEEEEEEeCCCceecCcEEEEEeCcCC
Confidence 999999999994 44567788888886553
No 151
>2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor complex LIFR LIF, cytokine RE cytokine complex; HET: NAG FUC MAN; 4.00A {Mus musculus}
Probab=99.87 E-value=5.2e-21 Score=218.72 Aligned_cols=276 Identities=13% Similarity=0.059 Sum_probs=195.8
Q ss_pred CCeEEeCCCceeecCCCcEEEEEEEccCceEEEEECCEEcCCCCcEEEecCceEEEeccCCCCCeEEEEEEEcCCCceEE
Q psy574 293 PPVILFGPANQTLPLRSEARLRCQVRGEGSVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASW 372 (977)
Q Consensus 293 pp~i~~~p~~~~v~~g~~~~L~C~~~~~p~i~W~~~g~~l~~~~~~~~~~~~sl~I~~v~~~d~G~Y~C~a~n~~G~~~~ 372 (977)
+..+...|.+..+..|++++|.|.+. .+.|.|+++|..+... ++ ....+.|+|.++...|.|.|.|.+.+ +....
T Consensus 203 ~t~i~v~P~~~~v~~Gs~vtl~C~a~-~~~I~W~~ng~~i~~~-ri-~~~~~~L~I~nl~~sd~g~y~~~C~~--~~~i~ 277 (488)
T 2q7n_A 203 NTETNVFPQDKVVLAGSNMTICCMSP-TKVLSGQIGNTLRPLI-HL-YGQTVAIHILNIPVSENSGTNIIFIT--DDDVY 277 (488)
T ss_dssp CSSCCEECTTCEEESSCCCEEEECCS-SCEEEEEETTEECCCE-EC-SSSCEEEECCSCCCCCSSCEEEEEEE--SSCEE
T ss_pred CCceEECCCCCEEcCCCCEEEEEECC-CCEEEEEECCEECchh-hc-cceEEEEEEeCCCcccCCcEEEEEEc--CCeEE
Confidence 34445567788899999999999999 6899999999887543 21 12335699999999988888887763 23344
Q ss_pred EEEEEEECCCCCCCcccCCCCCCCCCCCCCCCeEEeeCCCceEEEEEcCCCC--CCcccceEEEEEeecCCCCCCCCCCC
Q psy574 373 SASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGLTLAWSRNNQI--GSSSLLGYQVEMYSRPLPSSSPSGDT 450 (977)
Q Consensus 373 s~~l~v~~~~~~~~~~~~~~~~~~~p~~P~~~~v~~~~~~sv~lsW~~p~~~--~~~~i~~Y~I~~~~~~~~~~~~~~~~ 450 (977)
.+.+.+. .+|++|.++.+...+..++.|+|.++.+. ++..+..|.|+|+..+...
T Consensus 278 ~~~l~v~----------------~pP~~P~nl~C~~~~~~svtcsW~pg~~~~l~G~~~t~Y~L~y~~~g~~~------- 334 (488)
T 2q7n_A 278 GTVVFAG----------------YPPDVPQKLSCETHDLKEIICSWNPGRITGLVGPRNTEYTLFESISGKSA------- 334 (488)
T ss_dssp EEEEEEE----------------CCCCCCCSCEEEBSSSSEEEEEECCCSCCCCCTTSSCEEEEEETTTCCEE-------
T ss_pred EEEEEee----------------CCCCCCcccEEEEcCCCEEEEEEeCCCcCCCCCCCceeEEEEEEECCCCC-------
Confidence 6777776 45889999999988889999999998873 2356899999997543211
Q ss_pred CcccEEEecee-cCcCeEEEEccCCCCeEEEEEEEEcCCCCCCCCCCCceEEeeccccccccccCCcceeecCCCCCCCc
Q psy574 451 ATATWVRVATN-VPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRG 529 (977)
Q Consensus 451 ~~~~w~~~~~~-~~~~~~~i~~L~p~t~Y~~~V~a~n~~G~s~~S~~s~~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~g 529 (977)
.|...... .....+.+..+...+.|.|+|.|.|..|.+. | .+.+ .......|
T Consensus 335 ---~c~~~~~~~~~~~~ct~~l~~~~t~Y~f~V~A~N~~G~~~-S----~~~~-~~~~~v~P------------------ 387 (488)
T 2q7n_A 335 ---VFHRIEGLTNETYRLGVQMHPGQEIHNFTLTGRNPLGQAQ-S----AVVI-NVTERVAP------------------ 387 (488)
T ss_dssp ---EEECSSCCCSSCEEEEEECCSSCCCCEEEEEEEETTEEEE-E----EEEC-CGGGTBCC------------------
T ss_pred ---CCccccccCCceEEEEEcCCCCccEEEEEEEEEeCCCCcc-c----eEEE-EecCCCCC------------------
Confidence 33322211 2234455654444699999999999988742 2 1222 11111122
Q ss_pred chHHHHhhcccccCCceEEEEEeeEeCCCeEEEEEEec--CCCccceEEEEEEecCCCCCceEEEEeecCccceE--EEC
Q psy574 530 ESLRRARQHLQEGGGSLIELTEVKPMTSTSVKLTWEIL--NTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGF--LVT 605 (977)
Q Consensus 530 ~~~~~~~~~l~~~~~~~~~~l~~~~~~~tsv~lsW~~p--~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~--~i~ 605 (977)
.+|.++++...+++++.|+|++| .++.+.+|.|+|+..+. ..|.............+ .|.
T Consensus 388 ---------------~PP~nl~v~~~s~~sl~LsW~pP~~~~g~~l~YeV~Yr~~~~-~~w~~~~~~~~~~~~~~~v~l~ 451 (488)
T 2q7n_A 388 ---------------HDPTSLKVKDINSTVVTFSWYLPGNFTKINLLCQIEICKANS-KKEVRNATIRGAEDSTYHVAVD 451 (488)
T ss_dssp ---------------CCCEEEEEEECSTTCEEEEEEEEEECSSSEEEEEEEEBCTTS-CCEEEEEEEECCEEEEEEEEEC
T ss_pred ---------------CCCeEEEEEecCCCEEEEEEeCCCCCCCcceEEEEEEEECCC-CCceEEEEEecCCCcEEEEEeC
Confidence 23378899999999999999999 56778999999998763 45532211111123455 999
Q ss_pred CCCCCcEEEEEEEEeeccee---CCCCCceEEeccCCC
Q psy574 606 GLAHYSRYEFFLVPFFGSVD---GKPSNLRAVRTLECE 640 (977)
Q Consensus 606 ~L~p~t~Y~~~V~a~n~~g~---g~~s~~~~~~T~~~~ 640 (977)
+|+|++.|.|+|+|.+ .|. |++|..+.++|.+++
T Consensus 452 ~L~P~T~Y~~rVRA~~-~g~G~WS~WS~~v~~~T~e~a 488 (488)
T 2q7n_A 452 KLNPYTAYTFRVRCSS-KTFWKWSRWSDEKRHLTTEAT 488 (488)
T ss_dssp SCCSSCCBBCCEEEEE-SSCSSCCCCCCCCCBCCCCCC
T ss_pred CCCCCceEEEEEEEEE-CCCCCCCCCcCCEeEECCCCC
Confidence 9999999999999999 887 577888889888753
No 152
>2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding; 2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1 PDB: 2ibb_A
Probab=99.86 E-value=9.5e-21 Score=195.19 Aligned_cols=196 Identities=23% Similarity=0.306 Sum_probs=159.8
Q ss_pred CCCCCCCeEEeeCCCceEEEEEcCCCCCCcccceEEEEEeecCCCCCCCCCCCCcccEEEecee------------cCcC
Q psy574 398 PGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATN------------VPSP 465 (977)
Q Consensus 398 p~~P~~~~v~~~~~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~~------------~~~~ 465 (977)
+.||.++.+..++.+++.|+|.++.. .++.+.+|.|+|+...... .|...... ....
T Consensus 2 ~~pP~~~~~~~~~~~sv~l~W~~p~~-~~~~i~~Y~v~~~~~~~~~----------~w~~~~~~~~~~~~~~~~~~~~~~ 70 (214)
T 2ibg_A 2 TYPPTPPNVTRLSDESVMLRWMVPRN-DGLPIVIFKVQYRMVGKRK----------NWQTTNDNIPYGKPKWNSELGKSF 70 (214)
T ss_dssp CCCCCCCEEEEEETTEEEEEEEEECC-SSCCEEEEEEEEEESSSSC----------CCEECSCCEECCSSSCSSSSEEEE
T ss_pred CCCCCCCEeeEecCCEEEEEEECCCC-CCCCceEEEEEEEECCCCC----------cCcccccccCccccccccccCcce
Confidence 46788888899999999999999887 4578999999999865433 77766521 3456
Q ss_pred eEEEEccCCCCeEEEEEEEEcCCCCCCCCCCCceEEeeccccccccccCCcceeecCCCCCCCcchHHHHhhcccccCCc
Q psy574 466 ILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGS 545 (977)
Q Consensus 466 ~~~i~~L~p~t~Y~~~V~a~n~~G~s~~S~~s~~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~g~~~~~~~~~l~~~~~~ 545 (977)
.+++.+|.|++.|.|+|+|.|..|.+.+|..+..+.+....+... +.
T Consensus 71 ~~~i~~L~p~t~Y~~~V~A~n~~g~~~~s~~s~~~~~~~~~~~~~---------------------------------~~ 117 (214)
T 2ibg_A 71 TASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQPGAALDP---------------------------------MP 117 (214)
T ss_dssp EEEECSCCTTCEEEEEEEEEETTSCEEECCCCCCEECCCSTTSCC---------------------------------CC
T ss_pred eEEecCCcCCCEEEEEEEEEecCCCCCCCCCcccEEeccCcCCCC---------------------------------CC
Confidence 788999999999999999999999998887777666633322111 22
Q ss_pred eEEEEEeeEeCCCeEEEEEEec---CCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeec
Q psy574 546 LIELTEVKPMTSTSVKLTWEIL---NTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFG 622 (977)
Q Consensus 546 ~~~~l~~~~~~~tsv~lsW~~p---~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~ 622 (977)
++.++++...+.++|.|+|++| .++.+.+|.|+|+..+....|....+.. ...++++|.+|+|++.|.|+|+|+|.
T Consensus 118 ~P~~~~~~~~~~~sv~l~W~~p~~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~-~~~~~~~i~~L~p~t~Y~~~V~A~n~ 196 (214)
T 2ibg_A 118 VPELLEIEEYSETAVVLHWSLASDADEHLITGYYAYYRPSSSAGEYFKATIEG-AHARSFKIAPLETATMYEFKLQSFSA 196 (214)
T ss_dssp CCEECCCBCCSSSCEEEEEECCTTCCGGGCCEEEEEEEETTCCSCCEEEEEEC-TTCCEEEECSCCTTCEEEEEEEEECS
T ss_pred CCcccEEEEccCCeEEEEEeCCCccCCCCcceEEEEEEECCCCcceEEeeccC-CcceEEEeCCCCCCCEEEEEEEEEcC
Confidence 3467889999999999999998 5678999999999887556787766553 45689999999999999999999999
Q ss_pred ceeCCCCCceEEeccC
Q psy574 623 SVDGKPSNLRAVRTLE 638 (977)
Q Consensus 623 ~g~g~~s~~~~~~T~~ 638 (977)
.|.|++|..+.++|.+
T Consensus 197 ~G~g~~S~~~~~~T~~ 212 (214)
T 2ibg_A 197 ASASEFSALKQGRTQR 212 (214)
T ss_dssp SCBCCCCCCEEEECCC
T ss_pred CccCCCcceEeeEecC
Confidence 9999999999999975
No 153
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*
Probab=99.86 E-value=8.3e-21 Score=194.46 Aligned_cols=181 Identities=20% Similarity=0.276 Sum_probs=144.5
Q ss_pred cceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEee-----------------cCCCceEEEecCcEEEEcCCC
Q psy574 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPID-----------------FENSKRLRLVDGTNLAIQDSR 69 (977)
Q Consensus 7 ~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~-----------------~~~~~r~~~~~~g~L~I~~v~ 69 (977)
++.++|..+.+.+|++++|.|.. .+.|.+.|.|+|++.... ....+|+.+..+++|.|.+++
T Consensus 1 ~~~i~~~~~~v~~G~~v~L~C~~-~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~ 79 (208)
T 3r4d_A 1 EVTIEAVPPQVAEDNNVLLLVHN-LPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMIT 79 (208)
T ss_dssp CCEEEEESSEEETTCCEEEEEEC-CCSSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEECTTSCEEECSCC
T ss_pred CccccCccceeecCCcEEEEEeC-CCCCceEEEeccCCCCCccceEEEEecCCCccccCccccceeEEecCCeEEEcccc
Confidence 36788888999999999999997 778889999999753221 123557778888899999999
Q ss_pred CCCCeEEEEEEEecCceeeeEeEEEEEEcC---CeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCC-Cce
Q psy574 70 KTDDGRYQCVVKNVAGTRESTDAVLRVLVK---PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPE-DRM 145 (977)
Q Consensus 70 ~~D~G~Y~C~a~n~~g~~~s~~~~l~V~~~---P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~-~~~ 145 (977)
.+|+|.|+|.+.+..+...+..+.|.|..+ |.+...+.. +.+|+.+.|.|.+.+.| +.|.|++++..+.. .++
T Consensus 80 ~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~--~~~g~~v~l~C~~~~~p-p~i~W~~~g~~l~~~~~~ 156 (208)
T 3r4d_A 80 MKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTT--VKELDSVTLTCLSNDIG-ANIQWLFNSQSLQLTERM 156 (208)
T ss_dssp GGGCEEEEEEEECSSCEEEEEEEEEEEECCCCCCEEEESCSS--CCTTCCEEEEEECSCTT-CEEEEEETTEECCCCSSE
T ss_pred ccCCeEEEEEEEcccCceeEEEEEEEeccCCCCCEEecCCce--EeeCCCEEEEEECCCCC-CceEEEECCEeCCCCCCe
Confidence 999999999999986656667788888865 555555544 88999999999998876 79999999998865 345
Q ss_pred EEe-ccceEEEccCccCCCeEEEEEEEeCCee-EEEEEEEEEeeCCeE
Q psy574 146 SVL-PSRSLQLSDVRLEDAGEYVCEAENAVGK-ISASATLTVQMAPIV 191 (977)
Q Consensus 146 ~~~-~~~~L~I~~v~~~D~G~Y~C~a~n~~g~-~~~~~~L~V~~~p~~ 191 (977)
.+. .+..|.|.++..+|+|.|+|.|.|..|. .+..+.|.|..+|.+
T Consensus 157 ~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~s~~~~l~v~~~~~~ 204 (208)
T 3r4d_A 157 TLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIFDPHH 204 (208)
T ss_dssp EEETTTTEEEESSCCGGGCEEEEEEEECTTCCEECCCEEECCC-----
T ss_pred EEcCCCCEEEEeccCHHhCeEEEEEEecCCCcccCCceeeeEEeCCcc
Confidence 554 3478999999999999999999999997 456788888877764
No 154
>2gee_A Hypothetical protein; fibronectin, EIIIB, cancer, neovascularization, cell adhesion, protein binding, oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A
Probab=99.86 E-value=2.3e-20 Score=190.40 Aligned_cols=173 Identities=18% Similarity=0.240 Sum_probs=144.2
Q ss_pred eEEEEEeeEeCCCeEEEEEEecCCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeeccee
Q psy574 546 LIELTEVKPMTSTSVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVD 625 (977)
Q Consensus 546 ~~~~l~~~~~~~tsv~lsW~~p~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~ 625 (977)
+|.++++..++.++|.|+|++|.++.+.+|+|+|+..+....+....+ ....+++.|.+|.|++.|.|+|+|.|..|.
T Consensus 25 ~P~~l~~~~~~~~sv~lsW~~p~~~~i~~Y~v~~~~~~~~~~~~~~~~--~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g~ 102 (203)
T 2gee_A 25 QPTDLSFVDITDSSIGLRWTPLNSSTIIGYRITVVAAGEGIPIFEDFV--DSSVGYYTVTGLEPGIDYDISVYTVKNGGE 102 (203)
T ss_dssp CCEEEEEECCTTTCEEEEEECCSSSSCCEEEEEEEESSSSSCCEEEEE--ETTCCEEEECSCCTTCEEEEEEEEESSSCB
T ss_pred CCCccEEEecCCCEEEEEecCCCCCCccEEEEEEEECCCCCCceeEEc--CCCccEEEeCCCCCCCEEEEEEEEEeCCCc
Confidence 468899999999999999999977789999999998875433333332 257789999999999999999999998776
Q ss_pred CCCCCceEEeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecC-CcceEEEEecCCcCeEEec
Q psy574 626 GKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGN-NSALINMTVSASTPTLLLT 704 (977)
Q Consensus 626 g~~s~~~~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~-~~~~~~~~~~~~~~~~~l~ 704 (977)
+. ...+.+...+| +|.++++...+.+++.|+|++|+ ++.|.+|.|+|+..+ ........+.+..++++|.
T Consensus 103 s~---~~~~~t~~~~p--~P~~l~~~~~~~~sv~l~W~~p~----~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~ 173 (203)
T 2gee_A 103 ST---PTTLTQQTAVP--PPTDLRFTNIGPDTMRVTWAPPP----SIDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLT 173 (203)
T ss_dssp CC---CEEEEEECCCC--CCEEEEEEEEETTEEEEEEECCS----SCCCSEEEEEEEETTCGGGCEEEEECTTCCEEEEC
T ss_pred cc---cEeeeecCCCc--CCCceEEEEcCCCEEEEEEcCCC----CCCccEEEEEEEECCCCCccEEEEcCCCcCEEEEC
Confidence 54 34566666666 78999999999999999999993 468999999999854 4445566778889999999
Q ss_pred CCCCCceEEEEEEEEcCCCcCCCCC
Q psy574 705 NLSAGIRYSVSLAATNRAGTGPYSR 729 (977)
Q Consensus 705 ~L~p~t~Y~~~V~A~~~~G~g~~S~ 729 (977)
+|+|++.|.|+|+|+|.+|.|+++.
T Consensus 174 ~L~p~t~Y~~~V~A~~~~g~s~p~~ 198 (203)
T 2gee_A 174 NLLPGTEYVVSVSSVYEQHESTPLR 198 (203)
T ss_dssp SCCTTCEEEEEEEEEETTEECCCEE
T ss_pred CCCCCCEEEEEEEEecCCCcCCCee
Confidence 9999999999999999999887543
No 155
>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4
Probab=99.86 E-value=2.6e-21 Score=198.71 Aligned_cols=179 Identities=22% Similarity=0.389 Sum_probs=147.0
Q ss_pred ccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEe----------ecCCCceEEEecCcEEEEcCCCCCCCeE
Q psy574 6 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPI----------DFENSKRLRLVDGTNLAIQDSRKTDDGR 75 (977)
Q Consensus 6 ~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l----------~~~~~~r~~~~~~g~L~I~~v~~~D~G~ 75 (977)
..|...|.++.+.+|++++|.|.+ .+.|.+.|.|+|++..+ ......|+.+. ++.|.|.+++.+|+|.
T Consensus 2 ~~v~~~~~~~~v~~G~~v~L~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~-~~~L~i~~v~~~D~G~ 79 (212)
T 1f97_A 2 GSVYTAQSDVQVPENESIKLTCTY-SGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFS-SSGITFSSVTRKDNGE 79 (212)
T ss_dssp CEEECSCSEEEEETTCCEEEECEE-ESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEE-TTEEEESCCCGGGCEE
T ss_pred ceEEecCCCeEEEcCCCEEEEeEe-CCCCCcEEEEEECCCceeeEEecCCcccccccCcEEee-ceeEEEcccCcccCeE
Confidence 457788899999999999999999 67899999999987653 22334567766 4899999999999999
Q ss_pred EEEEEEecCce-eeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEE-ecccCceEEEEEECCe-eCCCC---------
Q psy574 76 YQCVVKNVAGT-RESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECS-VGGDAVLTVHWKRLGS-AMPED--------- 143 (977)
Q Consensus 76 Y~C~a~n~~g~-~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~-v~g~p~~~i~W~k~~~-~l~~~--------- 143 (977)
|+|.+.+..|. ..+..+.|.|..+|.+...+....+.+|+.+.|.|. +.|.|.+.+.|+|++. .+...
T Consensus 80 Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~l~~~~~~~~~~~~ 159 (212)
T 1f97_A 80 YTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMN 159 (212)
T ss_dssp EEEEEEETTSSSEEEEEEEEEEEBCCCCCEEECCSEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSS
T ss_pred EEEEEEccCCCcccEEEEEEEEEcCCCCcccCCccccCCCCeEEEEEEcccCcCCCEEEEEeCCcccccccccccccccC
Confidence 99999998762 235678899999988777676778999999999999 6999999999999999 77642
Q ss_pred -ceEE-eccceEEEccCccCCCeEEEEEEEeCCeeE--EEEEEEEEe
Q psy574 144 -RMSV-LPSRSLQLSDVRLEDAGEYVCEAENAVGKI--SASATLTVQ 186 (977)
Q Consensus 144 -~~~~-~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~--~~~~~L~V~ 186 (977)
++.. ...+.|.|.++..+|+|.|+|.|.|..|.. +..+.|.|.
T Consensus 160 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~l~V~ 206 (212)
T 1f97_A 160 SSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAV 206 (212)
T ss_dssp SCEEECTTTCCEEESSCCGGGCEEEEEEEECSSSCCEECCCEEEEEE
T ss_pred ceeEecCCCceEEEEecChhhCcEEEEEEccccCCccccceEEEEEE
Confidence 2222 246789999999999999999999999976 456666665
No 156
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X
Probab=99.86 E-value=1.9e-21 Score=200.03 Aligned_cols=180 Identities=24% Similarity=0.396 Sum_probs=143.2
Q ss_pred ceecccceEEeCCCcEEEEEECCCCCC----CCeEEEEe----------------CCEEeec---CCCceEEEec-----
Q psy574 8 FRVQPKSQRVAAGDTALLECGPPRGHP----EPTLVWKK----------------NGHPIDF---ENSKRLRLVD----- 59 (977)
Q Consensus 8 ~~~~p~~~~v~~G~~v~L~C~~~~g~P----~~~v~W~k----------------~g~~l~~---~~~~r~~~~~----- 59 (977)
+...+..+.+.+|++++|.|.+ .+.| .+.|.|+| ++..+.. ...+|+.+..
T Consensus 3 i~~~~~~v~v~~G~~v~L~C~~-~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 81 (214)
T 3jz7_A 3 ITTPEQRIEKAKGETAYLPCKF-TLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKS 81 (214)
T ss_dssp ---CEEEEEEETTSCEEECCBC-CCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCSCGGG
T ss_pred eecCCceEEEecCCCEEEEEEE-ecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEeccCccC
Confidence 4556778999999999999998 5555 46999998 5555521 2245777754
Q ss_pred -CcEEEEcCCCCCCCeEEEEEEEecCceeeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEe-cccCceEEEEEECC
Q psy574 60 -GTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSV-GGDAVLTVHWKRLG 137 (977)
Q Consensus 60 -~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v-~g~p~~~i~W~k~~ 137 (977)
+++|.|.+++.+|+|.|+|.+.|..|.. +..+.|.|..+|.+...+....+.+|+.+.|.|.+ .|.|.+.|.|+|++
T Consensus 82 ~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~-~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~~ 160 (214)
T 3jz7_A 82 GDASINVTNLQLSDIGTYQCKVKKAPGVA-NKKFLLTVLVKPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLS 160 (214)
T ss_dssp TBCCEEECSCCGGGCEEEEEEEEETTEEE-EEEEEEEEECCCBSCEEEEESCCBTTCCEEEEEECSBCCSSCEEEEEECS
T ss_pred CcccEEEccCChhhCeEEEEEEEeCCCcc-ccEEEEEEEcCCCCceeeeecceecCCcEEEEecCCCCCCCCEEEEEECC
Confidence 4679999999999999999999987754 56789999998887766666668899999999999 89999999999964
Q ss_pred e--eCCCCceEEeccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEEeeCC
Q psy574 138 S--AMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAP 189 (977)
Q Consensus 138 ~--~l~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~~~p 189 (977)
. .+.........++.|.|.+++.+|+|.|+|.|.|..|..+..+.|.|..||
T Consensus 161 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~P~ 214 (214)
T 3jz7_A 161 DSQTMPTPWLAEMTSPVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVVPPS 214 (214)
T ss_dssp TTCCCCGGGGGGTTSSEEEECSCCGGGCEEEEEEEECSSCEEEEEEEECCBCCC
T ss_pred CCCccCccceeccCCCEEEEecCCHHHCEEEEEEEEcCCCcEEEEEEEEEeCCC
Confidence 3 333322222356799999999999999999999999999999999988554
No 157
>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2
Probab=99.86 E-value=9.8e-23 Score=234.65 Aligned_cols=259 Identities=17% Similarity=0.286 Sum_probs=182.3
Q ss_pred eCCCceEEeCCCeEEEEEEecccC--ceEEEEEECC--eeC------------------CCCceEEecc-----ceEEEc
Q psy574 104 RGPKDTTVSASSIIVFECSVGGDA--VLTVHWKRLG--SAM------------------PEDRMSVLPS-----RSLQLS 156 (977)
Q Consensus 104 ~~p~~~~v~~G~~v~l~C~v~g~p--~~~i~W~k~~--~~l------------------~~~~~~~~~~-----~~L~I~ 156 (977)
..+....+.+|++++|.|.+.+.+ .+.|.|+|++ ..+ ..+|+.+..+ .+|.|.
T Consensus 4 ~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~ 83 (434)
T 1igy_B 4 QESGAELARPGASVKMSCKASGYTFTTYTIHWIKQRPGQGLEWIGYINPSSVYTNYNQRFKDKATLTRDRSSNTANIHLS 83 (434)
T ss_dssp ECCCCCEECTBCCEEECCEECSSCGGGCCCEEEEECTTCCEEEEEECCSSSCCCCCCGGGTTTEECCBCGGGCBBCEEEC
T ss_pred ECCCCeEecCCCCEEEEEEccCCcccCceEEEEEECCCCCCEEEEEEccCCCceecCccccccEEEEEECCCCEEEEEEC
Confidence 456677899999999999998763 6789999973 211 1245555432 479999
Q ss_pred cCccCCCeEEEEEEEeCCeeEEEEEEEEEee----CCeEEecCCCcEEeeCCeEEEEEEEecC-CCC-eEEEEEcCeeee
Q psy574 157 DVRLEDAGEYVCEAENAVGKISASATLTVQM----APIVRERPSDLRLEVGRDAVFLCGIEGS-PPP-STFWMLEGNRSL 230 (977)
Q Consensus 157 ~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~~----~p~~~~~p~~~~v~~G~~v~L~C~~~g~-p~~-~i~W~~~g~~~~ 230 (977)
+++.+|+|.|+|.+.|..+.....+.|.|.. +|.+...+....+.+|+.++|.|.+.|. |.+ .+.|++++..+.
T Consensus 84 ~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~G~~v~L~C~~~g~~P~p~~v~W~k~~~~~~ 163 (434)
T 1igy_B 84 SLTSDDSAVYYCVREGEVPYWGQGTTVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSG 163 (434)
T ss_dssp SBCGGGCSEECCCCSSSSCCCCCCEECEECCSCCBCCCEEEECCCCCCCCTTEEEEEEEEEEEBSSCCEEEETTTTBCSS
T ss_pred CCChHHCEEEEEEEEccccccCCceEEEEccCCCCCCeEEEcCCccccCCCCcEEEEEEEeeecCCCeEEEEeeCCcCCC
Confidence 9999999999999998654444556788863 4555443333445899999999999886 766 999999987531
Q ss_pred ecCCC---ccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEECC--------CCCCCCeEEeC
Q psy574 231 IYPGD---RVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGP--------DPNPPPVILFG 299 (977)
Q Consensus 231 ~~~~~---~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~~--------~~~~pp~i~~~ 299 (977)
..... ..+.+... +.|.|.+++.+| |.|+ |.|.|..+.......+.+... ....|..+..+
T Consensus 164 ~~~~~~~~~~~~~~~~------s~L~i~~~~~~d-g~Y~-C~a~n~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~v~~~~ 235 (434)
T 1igy_B 164 VHTFPAVLQSDLYTLS------SSVTVPSSPRPS-ETVT-CNVAHPASSTKVDKKIVPRDCGCKPCICTVPEVSSVFIFP 235 (434)
T ss_dssp EEECCCEECSSCEEEE------EEEEEETTTTTS-SCCE-EEEECTTTTCCEEEECCCCCCCCCCCCCCCSSSCCEEEEC
T ss_pred eEecCceecCCcEEEE------EEEEEcchhcCC-CcEE-EEEEeCCCCccceeeccCCCCCCccccCCCCcCcEEEEeC
Confidence 11000 01233322 379999999889 9999 999999998655555544310 01114444555
Q ss_pred CCcee-ecCCCcEEEEEEEcc-Cc-----eEEEEECCEEcCCCCcE--EE------ecCceEEEeccCCCCCeEEEEEEE
Q psy574 300 PANQT-LPLRSEARLRCQVRG-EG-----SVQWWRGEREVGSGPRV--NV------TGDGSLVLTDVTKEDSGEYTCVVK 364 (977)
Q Consensus 300 p~~~~-v~~g~~~~L~C~~~~-~p-----~i~W~~~g~~l~~~~~~--~~------~~~~sl~I~~v~~~d~G~Y~C~a~ 364 (977)
|.... +..|+.+.|.|.+.+ .| .|.|++++..+...... .. ...+.|.|..+...|.|.|+|.|.
T Consensus 236 p~~~~~v~~G~~~~L~C~~~g~~p~P~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~ 315 (434)
T 1igy_B 236 PKPKDTLLITVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPIMHQDWLNGKEFKCRVN 315 (434)
T ss_dssp CCHHHHHSTTSCCEEEEEECCCCSSCCCCCBCBBSSSCCBCCCSCCCCCCCCSSSCCCCCCEECCHHHHHHTCCCBCCBC
T ss_pred CChHHhcccCCCcEEEEEEeccccCCCCeEEEEEeCCcccCCcccCcceeCCCCcEEEEEEEEECHHHccCCCcEEEEEE
Confidence 54443 889999999999999 32 79999999876432110 00 123469999999999999999999
Q ss_pred cCCCce
Q psy574 365 SPHGSA 370 (977)
Q Consensus 365 n~~G~~ 370 (977)
|..|..
T Consensus 316 n~~~~~ 321 (434)
T 1igy_B 316 SAAFPA 321 (434)
T ss_dssp CSSCSS
T ss_pred CCCCCC
Confidence 998865
No 158
>1bqu_A Protein (GP130); cytokine receptor, glycoprotein 130, interleukine 6 R beta subunit, signaling protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1pvh_A 1bj8_A
Probab=99.86 E-value=5.6e-21 Score=197.04 Aligned_cols=191 Identities=10% Similarity=0.058 Sum_probs=150.5
Q ss_pred CCceEEEEEeeEeCCCeEEEEEEec-CCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCC-CCCcEEEEEEEEe
Q psy574 543 GGSLIELTEVKPMTSTSVKLTWEIL-NTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGL-AHYSRYEFFLVPF 620 (977)
Q Consensus 543 ~~~~~~~l~~~~~~~tsv~lsW~~p-~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L-~p~t~Y~~~V~a~ 620 (977)
++.++.++++...+.++|.|+|+++ ..+...+|.|+|+..+. ..+... ......+++.|.+| .+++.|.|+|.|.
T Consensus 7 pP~~P~~l~~~~~~~~sv~l~W~~p~~~~~~~~Y~v~~~~~~~-~~~~~~--~~~~~~~~~~i~~L~~~~t~Y~~~V~A~ 83 (215)
T 1bqu_A 7 PPEKPKNLSCIVNEGKKMRCEWDGGRETHLETNFTLKSEWATH-KFADCK--AKRDTPTSCTVDYSTVYFVNIEVWVEAE 83 (215)
T ss_dssp CCCCCEEEEEEEETTSCCEEEEECCSCCSSCCEEEEEEEETTE-ECCCEE--CCSSCTTEEECSSCCCTTSCEEEEEEEE
T ss_pred CCCCCEeeEeEECCCCcEEEEcCCCCCCCCCceEEEEEEEcCC-Cccccc--cccCCcceEEEcCCccccccEEEEEEEE
Confidence 3455689999999999999999999 44445899999987652 122221 22356689999999 9999999999999
Q ss_pred ecceeCCCCCceEEeccCCCCCCCCceeEEEEe--cCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCcceEEEE---ec
Q psy574 621 FGSVDGKPSNLRAVRTLECEPSGVPQLTDPVLL--NATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMT---VS 695 (977)
Q Consensus 621 n~~g~g~~s~~~~~~T~~~~P~~~P~~v~~~~~--~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~~~~~~~---~~ 695 (977)
|..|.+. +....+.+....++.+|.++++... +.+++.|+|++| ...+|.|.+|+|+|+..+...+.... ..
T Consensus 84 n~~G~~~-s~~~~~~~~~~~~p~pP~~~~~~~~~~~~~sv~l~W~~p--~~~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~ 160 (215)
T 1bqu_A 84 NALGKVT-SDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNP--SIKSVIILKYNIQYRTKDASTWSQIPPEDTA 160 (215)
T ss_dssp ETTEEEE-CCCEEECGGGSEECCCCEEEEEECC--CCSCEEEEEECC--GGGGTSCEEEEEEEEETTCSSCEECCGGGGC
T ss_pred ecccCcc-CCcEEecccccCcCCCCCceEEEEecCCCceEEEEEeCC--CCCCcceEEEEEEEccCCCCCceEecccccc
Confidence 9999986 5567777766656669999998764 678999999999 55678999999999986533333332 15
Q ss_pred CCcCeEEecCCCCCceEEEEEEEEcCCCcCC---CCCceEEeecCCC
Q psy574 696 ASTPTLLLTNLSAGIRYSVSLAATNRAGTGP---YSRPALLSLTSGP 739 (977)
Q Consensus 696 ~~~~~~~l~~L~p~t~Y~~~V~A~~~~G~g~---~S~~~~~~t~~~~ 739 (977)
...++++|.+|+|++.|.|+|+|.|.+|.|. +|+++.++|.+..
T Consensus 161 ~~~~~~~i~~L~p~t~Y~~~V~A~n~~g~g~~S~~S~~~~~~T~~~~ 207 (215)
T 1bqu_A 161 STRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDR 207 (215)
T ss_dssp SCCSEEEECSCCSSEEEEEEEEEEETTSCSCCCCCCCCEEEEECCCH
T ss_pred CccceEEeCCCCCCCEEEEEEEEccCCCCCccCCCCCcccccccccC
Confidence 6778999999999999999999999999876 6678888887643
No 159
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane, phosphorylation, immunoglobulin domain, membrane, glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Probab=99.86 E-value=1.3e-20 Score=190.25 Aligned_cols=176 Identities=30% Similarity=0.577 Sum_probs=143.9
Q ss_pred ccceec--ccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEec-CcEEEEcCCCCCCCeEEEEEEEe
Q psy574 6 EEFRVQ--PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD-GTNLAIQDSRKTDDGRYQCVVKN 82 (977)
Q Consensus 6 ~~~~~~--p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~-~g~L~I~~v~~~D~G~Y~C~a~n 82 (977)
|.|.+. |.++.+.+|++++|.|.+ .+.|.+.|.|+|+|..+... .++.+.. ++.|.|.+++.+|+|.|+|.+.+
T Consensus 3 P~i~~~~~~~~~~v~~G~~v~l~C~~-~~~p~~~v~W~~~~~~~~~~--~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 79 (192)
T 2va4_A 3 PAISMPQKSFNATAERGEEMTFSCRA-SGSPEPAISWFRNGKLIEEN--EKYILKGSNTELTVRNIINSDGGPYVCRATN 79 (192)
T ss_dssp CEEECSCCEEEEETTSCCCEEEECEE-ECSSCCEEEEEETTEECCCS--SSEEEETTTTEEEECSCCGGGCEEEEEEEEE
T ss_pred CcccCCCCCcEEEEecCCCEEEEEee-ccCCCCeEEEEECCeEcCCC--ccEEEeCCeeEEEEecCChhcCcEEEEEEEc
Confidence 555554 446889999999999999 78899999999999999543 4555554 45799999999999999999999
Q ss_pred cCceeeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEEC--CeeCCC------CceEEe---ccc
Q psy574 83 VAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRL--GSAMPE------DRMSVL---PSR 151 (977)
Q Consensus 83 ~~g~~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~--~~~l~~------~~~~~~---~~~ 151 (977)
..+... ..+.|.|..+|.+...+ ...+.+|+.+.|.|.+.|.|.+.+.|+++ +..+.. .++.+. ...
T Consensus 80 ~~~~~~-~~~~l~V~~~p~~~~~~-~~~~~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (192)
T 2va4_A 80 KAGEDE-KQAFLQVFVQPHIIQLK-NETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSS 157 (192)
T ss_dssp TTEEEE-EEEEEEEEEEEEEEEEC-CEEECTTSEEEEEEEEEEESCCEEEEEETTTTEEECTTCBCTTSCEEEEEETTEE
T ss_pred cccccc-eEEEEEEEccCcccccC-cceEEeCCeEEEEEEecCCCCCcEEEEeCCCCceeeccccccCCcEEEeeccCce
Confidence 887644 66789998888876654 45777899999999999999999999998 444432 344433 236
Q ss_pred eEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEEe
Q psy574 152 SLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQ 186 (977)
Q Consensus 152 ~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~ 186 (977)
.|.|.++..+|+|.|+|.|.|..|..+..+.|.|.
T Consensus 158 ~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 192 (192)
T 2va4_A 158 SLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE 192 (192)
T ss_dssp EEEEESCCGGGCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred EEEEecCCcccCEEEEEEEEecCCceEEEEEEEeC
Confidence 89999999999999999999999999889988874
No 160
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*
Probab=99.86 E-value=4.2e-21 Score=197.72 Aligned_cols=177 Identities=15% Similarity=0.197 Sum_probs=133.0
Q ss_pred cccceEEeCC--CcEEEEEECCCCCCCCeEEEEeC---CEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecCc
Q psy574 11 QPKSQRVAAG--DTALLECGPPRGHPEPTLVWKKN---GHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAG 85 (977)
Q Consensus 11 ~p~~~~v~~G--~~v~L~C~~~~g~P~~~v~W~k~---g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g 85 (977)
+|..+.+.+| ++++|.|.+ .+ |.+.|.|+|+ |..+.. ..++....++.|.|.+++.+|+|.|+|.|.|..+
T Consensus 13 ~p~~v~v~eG~~~~v~L~C~~-~~-p~~~v~w~~~~~~g~~~~~--~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~n~~~ 88 (213)
T 2x1w_L 13 QHGVVYITENKNKTVVIPCLG-SI-SNLNVSLCARYPEKRFVPD--GNRISWDSKKGFTIPSYMISYAGMVFCEAKINDE 88 (213)
T ss_dssp -CEEEEECCSTTCEEEECCCB-SS-TTCCEEEEEETTTEEECCC--SSSCEEETTTEEEEEGGGTTTCSEEEEEEC----
T ss_pred CceEEEEecCCCccEEEeecc-CC-CCcEEEEEhhcCCCccccC--CCcccccCCccEEEccCChhcCceEEEEEEECCe
Confidence 4678999999 999999998 44 7789999884 666632 3456666678899999999999999999998655
Q ss_pred eeeeEeEEEEEEc--CCeEEeCC-CceEEeCCCeEEEEEEecccC--ceEEEEEECCeeCCCCce---E---------Ee
Q psy574 86 TRESTDAVLRVLV--KPYIIRGP-KDTTVSASSIIVFECSVGGDA--VLTVHWKRLGSAMPEDRM---S---------VL 148 (977)
Q Consensus 86 ~~~s~~~~l~V~~--~P~~~~~p-~~~~v~~G~~v~l~C~v~g~p--~~~i~W~k~~~~l~~~~~---~---------~~ 148 (977)
...+..+.|.|.. +|.+...+ ....+.+|++++|.|.+.|.| .+.+.|++++..+..... . ..
T Consensus 89 ~~~s~~~~l~v~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~ 168 (213)
T 2x1w_L 89 SYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKK 168 (213)
T ss_dssp CEECCCEEEEECBCCEEEEEEESCSCEEEETTCCEEEEEEEEECTTBCCEEEEECSCSSCCSEEEEEEEECCCSSCSCEE
T ss_pred eEEEEEEEEEEeCCcccceEEcCCCCeEEcCCCCEEEEEEEECCCCCceEEEEEecCCccceEEEeccccccccCcccee
Confidence 5555557777754 34444444 444899999999999998854 457999999887543211 0 11
Q ss_pred ccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEEeeCCeE
Q psy574 149 PSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIV 191 (977)
Q Consensus 149 ~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~~~p~~ 191 (977)
...+|.|.+++.+|+|.|+|.|.|..|..++.+.|.|..+|.+
T Consensus 169 ~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p~i 211 (213)
T 2x1w_L 169 FLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEDPIE 211 (213)
T ss_dssp EEEEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEC----
T ss_pred eeEEEEECCCCcccCEEEEEEEecCCCcEEEEEEEEEeccccc
Confidence 2346999999999999999999999999999999999988765
No 161
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*
Probab=99.86 E-value=2.5e-21 Score=199.83 Aligned_cols=181 Identities=17% Similarity=0.116 Sum_probs=136.7
Q ss_pred ccccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEE-EecCc--EEEEcCCCCCCCeEEEEEE
Q psy574 4 LREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLR-LVDGT--NLAIQDSRKTDDGRYQCVV 80 (977)
Q Consensus 4 l~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~-~~~~g--~L~I~~v~~~D~G~Y~C~a 80 (977)
-+|.|...|. ..+.+|++|+|.|.+ .+ |.+.|.|+|||..+..... +.. ...++ .|.|.+++.+|+|.|+|.+
T Consensus 8 ~~P~i~~~p~-~~v~~G~~vtL~C~~-~~-~~~~~~W~k~g~~~~~~~~-~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a 83 (218)
T 1uct_A 8 PMPFISAKSS-PVIPLDGSVKIQCQA-IR-EAYLTQLMIIKNSTYREIG-RRLKFWNETDPEFVIDHMDANKAGRYQCQY 83 (218)
T ss_dssp CCCCEEESSC-SEEETTCCEEEEECC-CT-TCSEEEEEEEETTEEEECS-EECC----CCCEEEECSCCGGGCEEEEEEE
T ss_pred CCCEEEecCC-CccCCCCCEEEEEEc-CC-CCCEEEEEECCCccccccc-ccCCCCcceeeEEEEcccccccCEEEEEEE
Confidence 4678888887 589999999999998 44 6789999999987743221 111 22345 8999999999999999999
Q ss_pred EecCce-eeeEeEEEEEEc---CCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceEEeccceEEEc
Q psy574 81 KNVAGT-RESTDAVLRVLV---KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLS 156 (977)
Q Consensus 81 ~n~~g~-~~s~~~~l~V~~---~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~~~~~L~I~ 156 (977)
.|..|. ..+..+.|.|.. +|.+...| +..+.+|++++|.|.+.+.|.+.+.|+|++..+.........++.|.|.
T Consensus 84 ~n~~~~~~~s~~~~l~V~~~~~~P~i~~~p-~~~v~~G~~v~L~C~~~~~~~~~~~W~k~g~~~~~~~~~~~~~~~L~I~ 162 (218)
T 1uct_A 84 RIGHYRFRYSDTLELVVTGLYGKPFLSADR-GLVLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQHQSGEHPANFSLG 162 (218)
T ss_dssp EETTTEEEECCCEEEEEECSSCCCEEEESS-CSEECTTCCCEEEEECSSSCCSEEEEEETTCSSCCSEEECSSSEEEECC
T ss_pred EcCCCceeecCCEEEEEcCcccCCEEEeCC-CCccCCCCCEEEEEeCCCCCCCEEEEEECCCcccccccCCCccCEEEEc
Confidence 997653 345667888875 56676666 5688999999999977777888999999998876533222356789999
Q ss_pred cCccCCCeEEEEEEEeCCe-----eEEEEEEEEEeeCC
Q psy574 157 DVRLEDAGEYVCEAENAVG-----KISASATLTVQMAP 189 (977)
Q Consensus 157 ~v~~~D~G~Y~C~a~n~~g-----~~~~~~~L~V~~~p 189 (977)
+++.+|+|.|+|.|.|... ..+..+.|.|...+
T Consensus 163 ~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g~~ 200 (218)
T 1uct_A 163 PVDLNVSGIYRCYGWYNRSPYLWSFPSNALELVVTDSI 200 (218)
T ss_dssp SCCGGGCEEEEEEEECTTSTTEECCCCCCEEEEEC---
T ss_pred cCCcccCEEEEEEEEcCCCCCcCCCCCCcEEEEEecCC
Confidence 9999999999999998532 23456777777543
No 162
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Probab=99.86 E-value=2.2e-20 Score=189.35 Aligned_cols=184 Identities=23% Similarity=0.316 Sum_probs=155.1
Q ss_pred EcCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCC-CceEEeccc---eEEEccCccCCCeEEEEEEEe
Q psy574 97 LVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPE-DRMSVLPSR---SLQLSDVRLEDAGEYVCEAEN 172 (977)
Q Consensus 97 ~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~-~~~~~~~~~---~L~I~~v~~~D~G~Y~C~a~n 172 (977)
..+|.+...+.+..+.+|+++.|.|.+.+.|.+.+.|+|++..+.. .++.+..++ +|.|.+++.+|+|.|+|.+.|
T Consensus 5 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n 84 (197)
T 3lcy_A 5 GEAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATN 84 (197)
T ss_dssp CEEEEEEECCCCEEEETTSEEEEEEEEEEESCCEEEEEETTEEECCCSSEEEEESSSEEEEEEECCSGGGCEEEEEEEEC
T ss_pred CCCCcccccCCceEEeCCCcEEEEEEEecCCCCEEEEEECCEECCCCccEEEEeCCCEEEEEEecCCccCCEEEEEEEEC
Confidence 4578888899999999999999999999999999999999988754 455554443 799999999999999999999
Q ss_pred CCeeEEEEEEEEEeeCCeEEec---CCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCccccEEEEEccCCc
Q psy574 173 AVGKISASATLTVQMAPIVRER---PSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGM 249 (977)
Q Consensus 173 ~~g~~~~~~~L~V~~~p~~~~~---p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~ 249 (977)
..+.....+.|.|..+|.+... +....+.+|+.+.|.|.+.+.|.+.+.|++++..+. ...++.+... ...
T Consensus 85 ~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~-----~~~~~~~~~~-~~~ 158 (197)
T 3lcy_A 85 EVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQ-----NSENITIENT-EHY 158 (197)
T ss_dssp SSCEEEEEEEEEEEEEEEECTTSCCCSEEEEETTSCEEEEEEEEEESCCEEEEEETTEECC-----CCSSEEEEEC-SSE
T ss_pred CCCceeEEEEEEEEcCCCCCCCccCCcceeecCCCeEEEEEEEeeeeCCeeEEeECCEECC-----CCCceEEEEc-CCE
Confidence 9999888999999987776543 344578899999999999999999999999998763 3445555543 233
Q ss_pred eEEEEeeccc-CCCCeEEEEEEEcCCCceeEEEEEEEEC
Q psy574 250 NLLKIQNVSR-TAAPLIILCLGVNAAGSDLARASLTVSG 287 (977)
Q Consensus 250 s~L~I~~v~~-~d~G~Y~~C~a~n~~g~~~~~~~l~V~~ 287 (977)
..|.|.++.. +|+|.|+ |.|.|..|.....+.|.|.+
T Consensus 159 ~~L~i~~~~~~~d~G~Y~-C~a~n~~g~~~~~~~l~V~~ 196 (197)
T 3lcy_A 159 THLVMKNVQRKTHAGKYK-VQLSNVFGTVDAILDVEIQD 196 (197)
T ss_dssp EEEEESSCCHHHHCEEEE-EEEECSSCEEEEEEEEEEEC
T ss_pred EEEEEccccchhhCceEE-EEEEcCcCceEEEEEEEEec
Confidence 6899999995 8999999 99999999999998888875
No 163
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Probab=99.86 E-value=1.2e-20 Score=187.71 Aligned_cols=167 Identities=19% Similarity=0.301 Sum_probs=136.8
Q ss_pred cccccceecccceEEeCCCcEEEEEECCCCCCCCe-EEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEE
Q psy574 3 LLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPT-LVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVK 81 (977)
Q Consensus 3 ~l~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~-v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~ 81 (977)
.-+|.+.+.|..+.+.+|++++|.|.+ .+.|.+. +.|+|||..+.. .++.|.|.+++.+|+|.|+|.+.
T Consensus 5 ~~~p~i~~~p~~~~v~~G~~v~L~C~~-~~~p~~~~~~W~~~~~~~~~---------~~~~L~i~~~~~~d~G~Y~C~~~ 74 (175)
T 1fnl_A 5 LPKAVVFLEPQWYSVLEKDSVTLKCQG-AYSPEDNSTQWFHNESLISS---------QASSYFIDAATVNDSGEYRCQTN 74 (175)
T ss_dssp CCCCEEEEESCCSEEETTCCEEEEEEC-CCBTTBCCCEEEETTEEEES---------SCSEEEESSCCGGGCEEEEEECS
T ss_pred CCCCEEEEcCCceeeeCCCcEEEEeeC-CCCCCCcceEEEECCEEccC---------CceEEEEeCCCcccCEEEEEEee
Confidence 346888999998899999999999999 6777665 889999998842 36789999999999999999998
Q ss_pred ecCceeeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEecccCc-eEEEEEECCeeCCCCceEEeccceEEEccCcc
Q psy574 82 NVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAV-LTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRL 160 (977)
Q Consensus 82 n~~g~~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~-~~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~ 160 (977)
|..+ +..+.|.|..++.....+ ...+.+|+.+.|.|.+.+.+. +.+.|+|++..+.. ...+..|.|.+++.
T Consensus 75 n~~~---s~~~~l~V~~~~~~~~~~-~~~~~~g~~~~l~C~~~~~~~~~~~~W~k~g~~~~~----~~~~~~L~i~~v~~ 146 (175)
T 1fnl_A 75 LSTL---SDPVQLEVHIGWLLLQAP-RWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKY----FHHNSDFHIPKATL 146 (175)
T ss_dssp SSCC---CCCEEEEEECSSEEEECS-CSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEE----EEECCCEEESSCCG
T ss_pred CCcc---cccEEEEEeCCCceeeCC-CceecCCCCEEEEEEcCCCCCceEEEEEECCeEccC----CCCCCEEEEcccCh
Confidence 7544 456788888766655554 467889999999999977654 59999999987732 22567899999999
Q ss_pred CCCeEEEEEEEeCCee-EEEEEEEEEee
Q psy574 161 EDAGEYVCEAENAVGK-ISASATLTVQM 187 (977)
Q Consensus 161 ~D~G~Y~C~a~n~~g~-~~~~~~L~V~~ 187 (977)
+|+|.|+|.|.|..+. .+..+.|.|..
T Consensus 147 ~d~G~Y~C~a~n~~~~~~s~~~~l~V~~ 174 (175)
T 1fnl_A 147 KDSGSYFCRGLVGSKNVSSETVNITITQ 174 (175)
T ss_dssp GGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred hhCeEEEEEEEcCCCCccCccEEEEEeC
Confidence 9999999999997664 55677787764
No 164
>3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma, epidermolysis bullosa, alternative splicing, disease mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A
Probab=99.86 E-value=3.3e-21 Score=201.63 Aligned_cols=221 Identities=15% Similarity=0.193 Sum_probs=156.8
Q ss_pred CCCCCCCCCeEEeeCCCceEEEEEcCCCCCCcccceEEEEEeecCCCCCCCCCCCCcccEEEeceecCcCeEEEEccCCC
Q psy574 396 TYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVG 475 (977)
Q Consensus 396 ~~p~~P~~~~v~~~~~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~i~~L~p~ 475 (977)
.++++|.++.+..++.+++.|+|.++ ++.+.+|.|+|+...... ..+.. ......++++.+|.|+
T Consensus 4 ~p~~~P~~l~~~~~~~~si~l~W~~p----~g~i~~Y~v~~~~~~~~~---------~~~~~--~~~~~~~~~i~~L~p~ 68 (234)
T 3f7q_A 4 MDLGAPQNPNAKAAGSRKIHFNWLPP----SGKPMGYRVKYWIQGDSE---------SEAHL--LDSKVPSVELTNLYPY 68 (234)
T ss_dssp -CCCCCEEEEEEECSSSCEEEEEECC----SSCCCEEEEEEEETTSCG---------GGCEE--EEESSSEEEECSCCTT
T ss_pred CCCCCCcceEEEEcCCCEEEEEEECC----CCccceEEEEEEECCCCc---------cceEE--EcCCccEEEECCCCCC
Confidence 56899999999999999999999998 247899999998764431 02222 2356788999999999
Q ss_pred CeEEEEEEEEcCCCCCCCCCCCceEEeeccccccccccCCcceeecCCCCCCCcchHHHHhhcccccCCceEEEEEeeEe
Q psy574 476 LTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPM 555 (977)
Q Consensus 476 t~Y~~~V~a~n~~G~s~~S~~s~~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~g~~~~~~~~~l~~~~~~~~~~l~~~~~ 555 (977)
+.|.|+|+|.|..|.|.+|... .+++....| . + +.++++...
T Consensus 69 t~Y~~~V~A~n~~G~g~~s~~~-~~~T~~~~P----~---------~------------------------P~~l~~~~~ 110 (234)
T 3f7q_A 69 CDYEMKVCAYGAQGEGPYSSLV-SCRTHQEVP----S---------E------------------------PGRLAFNVV 110 (234)
T ss_dssp CEEEEEEEEEETTEECCCCCCE-EEECCCCCC----C---------C------------------------CCCCEEEEC
T ss_pred CEEEEEEEEEeCCCcCCCCCeE-EEEcCCCCC----C---------C------------------------CCccEEEEe
Confidence 9999999999999988776543 222312222 1 1 245788889
Q ss_pred CCCeEEEEEEec--CCCccceEEEEEEecCCCC----CceEEEEeecCccceEEECCCCCCcEEEEEEEEeecceeCCCC
Q psy574 556 TSTSVKLTWEIL--NTDYIEGVYIYSRGLDPPA----SVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPS 629 (977)
Q Consensus 556 ~~tsv~lsW~~p--~~~~i~~Y~v~y~~~~~~~----~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~g~~s 629 (977)
+.++|.|+|++| .++.+.+|.|+|+..+... .|...... ....+++.|.+|+|++.|.|+|+|.|..|.|++|
T Consensus 111 ~~~sv~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S 189 (234)
T 3f7q_A 111 SSTVTQLSWAEPAETNGEITAYEVCYGLVNDDNRPIGPMKKVLVD-NPKNRMLLIENLRESQPYRYTVKARNGAGWGPER 189 (234)
T ss_dssp SSSCEEEECCCCSCCSSCCCEEEEEEEEBCTTSCBSSCCEECCCS-CTTCCEEEEECCCTTCCEEEEEEEEETTEECCCE
T ss_pred cCCEEEEEEcCCCCCCCceeEEEEEEEECCCCCCccCcceEEEec-CCcceEEEeCCCCCCCeEEEEEEEECCCccCCCc
Confidence 999999999999 5678999999999876532 12222221 2456789999999999999999999999999998
Q ss_pred C-ceEEeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEe
Q psy574 630 N-LRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGG 683 (977)
Q Consensus 630 ~-~~~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~ 683 (977)
. .+.++|.+.+|..+|....+...+ ...+..+.+|.++++.
T Consensus 190 ~~~~~~~T~~~~P~~~P~~~~~~i~~-------------~~~g~~~~~~~~~~~~ 231 (234)
T 3f7q_A 190 EAIINLATQPKRPMSIPIIPDIPIVD-------------AQSGEDYDSFLMYSDD 231 (234)
T ss_dssp EEEECGGGSCCCCCCCCCCTTCCEEE-------------TTC-------------
T ss_pred CceeEeecCCCCCCCCccccceeeEE-------------cccCcchheeeeehhh
Confidence 7 588999999998888654332222 2334567788887654
No 165
>2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY docking, cell adhesion, structural protein; NMR {Homo sapiens}
Probab=99.86 E-value=5.4e-21 Score=194.87 Aligned_cols=176 Identities=12% Similarity=0.161 Sum_probs=141.3
Q ss_pred EEEEeeEeC--CCeEEEEEEecCCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeeccee
Q psy574 548 ELTEVKPMT--STSVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVD 625 (977)
Q Consensus 548 ~~l~~~~~~--~tsv~lsW~~p~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~ 625 (977)
.++++..++ +++|.|+|++|.++.+.+|.|+|+.......|....+ ..+..++.|.+|+|++.|.|+|+|.|..|.
T Consensus 4 ~~l~v~~v~~~~~si~l~W~~p~~~~i~~Y~v~~~~~~~~~~~~~~~~--~~~~~~~~i~~L~p~t~Y~~~V~a~n~~G~ 81 (201)
T 2ha1_A 4 VEVFITETPSQPNSHPIQWNAPQPSHISKYILRWRPKNSVGRWKEATI--PGHLNSYTIKGLKPGVVYEGQLISIQQYGH 81 (201)
T ss_dssp CEEECCSCSCCSSCEEEEEECCSSTTCCEEEEEEEETTCSSCCEEEEE--CTTCCEEEECSCCTTEEEEEEEEEECTTSC
T ss_pred eeEEEEecCCCCCEEEEEEeCCCCCCceEEEEEEEECCCCCceEEEec--CCCccEEEecCCCCCCEEEEEEEEEecccc
Confidence 578888877 9999999999977899999999998765566765544 356789999999999999999999999998
Q ss_pred CCCCCceEEeccCC-----------CCCCCC----ceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecC-Ccce
Q psy574 626 GKPSNLRAVRTLEC-----------EPSGVP----QLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGN-NSAL 689 (977)
Q Consensus 626 g~~s~~~~~~T~~~-----------~P~~~P----~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~-~~~~ 689 (977)
|..+ .+.++|.+. .|..+| .++++...+.++|.|+|++| ++.|.+|.|.|+..+ ....
T Consensus 82 ~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~~~~~sv~l~W~~p-----~~~i~~Y~v~~~~~~~~~~~ 155 (201)
T 2ha1_A 82 QEVT-RFDFTTTSTSTPVTSNTVTGETTPFSPLVATSESVTEITASSFVVSWVSA-----SDTVSGFRVEYELSEEGDEP 155 (201)
T ss_dssp EEEE-EEEEEECCCCCTTCSCCCCCSCCCCCCSCSCCSSCCCCCSCCEEEECCCS-----CTTEEEEEEEEEETTTCCCC
T ss_pred cCce-eEEEecCCCCCCcccccccCCCCCCCCccCCceEEEecCCCeEEEEEeCC-----CCCccEEEEEEEECCCCCce
Confidence 8654 455555432 233333 46787788889999999988 358999999998754 3444
Q ss_pred EEEEecCCcCeEEecCCCCCceEEEEEEEEcCCCcCCCCCce
Q psy574 690 INMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPA 731 (977)
Q Consensus 690 ~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~~G~g~~S~~~ 731 (977)
....+.++.++++|.+|+|++.|.|+|+|+|.+|.|......
T Consensus 156 ~~~~v~~~~~~~~i~~L~p~t~Y~~~V~A~~~~G~~~~~s~~ 197 (201)
T 2ha1_A 156 QYLDLPSTATSVNIPDLLPGRKYIVNVYQISEDGEQSLILST 197 (201)
T ss_dssp EEEEEETTCCEEEECSCCTTCEEEEEEEEEETTSCEEEEEEE
T ss_pred eEEEcCCceeEEEeCCCCCCCEEEEEEEEEcCCCCcccEeeE
Confidence 556678889999999999999999999999999998765433
No 166
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane, phosphorylation, immunoglobulin domain, membrane, glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Probab=99.86 E-value=4.2e-20 Score=186.39 Aligned_cols=185 Identities=21% Similarity=0.336 Sum_probs=149.9
Q ss_pred CCeEEeCCC--ceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCC-ceEEe-ccceEEEccCccCCCeEEEEEEEeCC
Q psy574 99 KPYIIRGPK--DTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED-RMSVL-PSRSLQLSDVRLEDAGEYVCEAENAV 174 (977)
Q Consensus 99 ~P~~~~~p~--~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~-~~~~~-~~~~L~I~~v~~~D~G~Y~C~a~n~~ 174 (977)
+|.+...+. +..+.+|+++.|.|.+.|.|.+.+.|+|++..+... ++.+. .+..|.|.+++.+|+|.|+|.+.|..
T Consensus 2 pP~i~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~ 81 (192)
T 2va4_A 2 MPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKA 81 (192)
T ss_dssp CCEEECSCCEEEEETTSCCCEEEECEEECSSCCEEEEEETTEECCCSSSEEEETTTTEEEECSCCGGGCEEEEEEEEETT
T ss_pred CCcccCCCCCcEEEEecCCCEEEEEeeccCCCCeEEEEECCeEcCCCccEEEeCCeeEEEEecCChhcCcEEEEEEEccc
Confidence 566665543 567889999999999999999999999999988754 44443 34679999999999999999999999
Q ss_pred eeEEEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecC--CCccccEEEEEccCCceEE
Q psy574 175 GKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYP--GDRVDNIQAEITSDGMNLL 252 (977)
Q Consensus 175 g~~~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~--~~~~~~~~~~~~~~g~s~L 252 (977)
+.....+.|.|..+|.+...+ ...+.+|+.++|.|.+.+.|.+.+.|++++....+.. .....++.+... .+.+.|
T Consensus 82 ~~~~~~~~l~V~~~p~~~~~~-~~~~~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~L 159 (192)
T 2va4_A 82 GEDEKQAFLQVFVQPHIIQLK-NETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQ-HGSSSL 159 (192)
T ss_dssp EEEEEEEEEEEEEEEEEEEEC-CEEECTTSEEEEEEEEEEESCCEEEEEETTTTEEECTTCBCTTSCEEEEEE-TTEEEE
T ss_pred cccceEEEEEEEccCcccccC-cceEEeCCeEEEEEEecCCCCCcEEEEeCCCCceeeccccccCCcEEEeec-cCceEE
Confidence 988889999999888876654 4567789999999999999999999999943332222 122455655543 344699
Q ss_pred EEeecccCCCCeEEEEEEEcCCCceeEEEEEEEE
Q psy574 253 KIQNVSRTAAPLIILCLGVNAAGSDLARASLTVS 286 (977)
Q Consensus 253 ~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~ 286 (977)
.|.+++.+|+|.|+ |.|.|..|....++.|.|+
T Consensus 160 ~i~~~~~~d~G~Y~-C~a~n~~g~~~~~~~l~V~ 192 (192)
T 2va4_A 160 HIKDVKLSDSGRYD-CEAASRIGGHQKSMYLDIE 192 (192)
T ss_dssp EEESCCGGGCEEEE-EEEECSSCEEEEEEEEEEC
T ss_pred EEecCCcccCEEEE-EEEEecCCceEEEEEEEeC
Confidence 99999999999999 9999999998888888773
No 167
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*
Probab=99.86 E-value=6.6e-21 Score=189.72 Aligned_cols=169 Identities=21% Similarity=0.341 Sum_probs=137.1
Q ss_pred ccccceecccceEEeCCCcEEEEEECCCCCCCC-eEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEe
Q psy574 4 LREEFRVQPKSQRVAAGDTALLECGPPRGHPEP-TLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKN 82 (977)
Q Consensus 4 l~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~-~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n 82 (977)
-+|.|.+.|..+.+.+|++++|.|.+ .+.|.+ .+.|+|+|..+.. .++.|.|.+++.+|+|.|+|.+.|
T Consensus 3 ~~P~i~~~p~~~~v~~G~~v~L~C~~-~~~~~~~~i~W~~~~~~~~~---------~~~~L~i~~v~~~d~G~Y~C~~~~ 72 (176)
T 1f2q_A 3 QKPKVSLNPPWNRIFKGENVTLTCNG-NNFFEVSSTKWFHNGSLSEE---------TNSSLNIVNAKFEDSGEYKCQHQQ 72 (176)
T ss_dssp -CCCCEEESSCSEEETTCCEEEECCT-TCC----CCEEEETTEECSC---------CSSEEEECSCCGGGCEEEEEECTT
T ss_pred CCCEEEcCCCCcceecCCcEEEEEeC-CCCCCcceEEEEECCeECCC---------CceEEEEeccceecCEEEEEEcCC
Confidence 36888999999999999999999999 666664 7999999998842 267899999999999999999987
Q ss_pred cCceeeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEe-cccCceEEEEEECCeeCCCCceEEeccceEEEccCccC
Q psy574 83 VAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSV-GGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLE 161 (977)
Q Consensus 83 ~~g~~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v-~g~p~~~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~ 161 (977)
..+ +..+.|.|..++.....+ ...+.+|+++.|.|.+ .+.|.+.+.|+|++..+.... .+..|.|.+++.+
T Consensus 73 ~~~---s~~~~l~V~~~~~~~~~~-~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~----~~~~L~i~~v~~~ 144 (176)
T 1f2q_A 73 VNE---SEPVYLEVFSDWLLLQAS-AEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWY----ENHNISITNATVE 144 (176)
T ss_dssp SSC---CCCEEEEEECSSEEEEES-CSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCC----CSSEEEESSCCGG
T ss_pred ccc---cccEEEEEeCcceeecCC-cceeeCCCCEEEEEEecCCCCceEEEEEECCEEEeeec----CCCeEEECCCCcc
Confidence 544 356788888655554444 4678899999999999 567788999999999885322 4678999999999
Q ss_pred CCeEEEEEEEeCCee-EEEEEEEEEeeCCe
Q psy574 162 DAGEYVCEAENAVGK-ISASATLTVQMAPI 190 (977)
Q Consensus 162 D~G~Y~C~a~n~~g~-~~~~~~L~V~~~p~ 190 (977)
|+|.|+|.|.|..+. .+..+.|.|..+|.
T Consensus 145 d~G~Y~C~a~n~~~~~~s~~~~l~V~~~p~ 174 (176)
T 1f2q_A 145 DSGTYYCTGKVWQLDYESEPLNITVIKAPR 174 (176)
T ss_dssp GCEEEEEEEEETTEEEECCCEEEEEECSCC
T ss_pred cCEEEEEEEEeCCcceEecCEEEEEecCCC
Confidence 999999999996544 56678999988775
No 168
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}
Probab=99.86 E-value=5.4e-21 Score=193.07 Aligned_cols=181 Identities=25% Similarity=0.402 Sum_probs=154.1
Q ss_pred EcCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCC--CceEEec-cceEEEccCccCCCeEEEEEEEeC
Q psy574 97 LVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPE--DRMSVLP-SRSLQLSDVRLEDAGEYVCEAENA 173 (977)
Q Consensus 97 ~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~--~~~~~~~-~~~L~I~~v~~~D~G~Y~C~a~n~ 173 (977)
..+|.+...+.+..+.+|+++.|.|.+.|.|.+.+.|+|++..+.. .++.+.. +..|.|.+++.+|+|.|+|.+.|.
T Consensus 5 ~~~P~i~~~~~~~~~~~G~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 84 (192)
T 2iep_A 5 PKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTANNG 84 (192)
T ss_dssp CEEEEESSCCCEEEEETTSCEEEECCEEEESCCEEEEEETTEECCTTCTTEEEEGGGTEEEESSCCGGGCEEEEEEEECS
T ss_pred CCCceeecCccceeeeCCCcEEEEeeCCCCCCCeEEEEECCEEccccCccEEEcCCccEEEEcCCCcccCeEEEEEEEcC
Confidence 4567888888888999999999999999999999999999998763 4555553 356999999999999999999998
Q ss_pred Cee-EEEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCccccEEEEEccCCceEE
Q psy574 174 VGK-ISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLL 252 (977)
Q Consensus 174 ~g~-~~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~s~L 252 (977)
.|. ....+.|.|..+|.+...+....+.+|+.++|.|.+.+.|.+.+.|++++..+. ...++.... .+ .|
T Consensus 85 ~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~-----~~~~~~~~~--~~--~L 155 (192)
T 2iep_A 85 VGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALR-----ENSRIAVLE--SG--SL 155 (192)
T ss_dssp SSCCEEEEEEEEEEEEEEEEECCCCEEEETTSCEEECCEEEEESCCEEEEEETTEECC-----CCSSEEECT--TS--CE
T ss_pred CCceeEeEEEEEEEeCCccccCCcceEEeCCCcEEEEEEEeccCCceEEEEeCCEEcc-----CCCcEEEec--CC--cE
Confidence 877 667789999999999988888899999999999999999999999999998763 223443332 34 89
Q ss_pred EEeecccCCCCeEEEEEEEcCCCce-eEEEEEEEEC
Q psy574 253 KIQNVSRTAAPLIILCLGVNAAGSD-LARASLTVSG 287 (977)
Q Consensus 253 ~I~~v~~~d~G~Y~~C~a~n~~g~~-~~~~~l~V~~ 287 (977)
.|.++..+|+|.|+ |.|.|..|.. +..+.|.|..
T Consensus 156 ~i~~~~~~d~G~Y~-C~a~n~~g~~~s~~~~l~V~~ 190 (192)
T 2iep_A 156 RIHNVQKEDAGQYR-CVAKNSLGTAYSKLVKLEVEV 190 (192)
T ss_dssp EESSCCGGGCEEEE-EEEEETTEEEECCCEEEEEEC
T ss_pred EEecCChhhCEEEE-EEEEcCCCcEEEEEEEEEEEe
Confidence 99999999999999 9999999987 4457888876
No 169
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}
Probab=99.85 E-value=2e-21 Score=197.24 Aligned_cols=167 Identities=16% Similarity=0.210 Sum_probs=118.6
Q ss_pred ccccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEec
Q psy574 4 LREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNV 83 (977)
Q Consensus 4 l~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~ 83 (977)
-+|.|.+.|.. .+.+|++++|.|.+ .+.|. .|.|+|||..+......+.....++.|.|.+++.+|+|.|+|.|.|.
T Consensus 4 ~~P~i~~~p~~-~v~~G~~v~L~C~~-~~~~~-~~~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~ 80 (196)
T 2d3v_A 4 SKATLWAEPGS-VISRGNSVTIRCQG-TLEAQ-EYRLVKEGSPEPWDTQNPLEPKNKARFSIPSMTEHHAGRYRCYYYSP 80 (196)
T ss_dssp CBCEEEEESCS-EEETTCCEEEEEEC-CTTCC-EEEEEETTCSSCSEEECCCSSTTEEEEEESSCCGGGCEEEEEEEEET
T ss_pred CCCEEEeCCCC-cccCCCeEEEEEeC-CCCCc-EEEEEECCCCCCcccccccCCccccEEEeccCChhHCeEEEEEEeCC
Confidence 46788888874 89999999999999 56665 99999999877422111111123567999999999999999999988
Q ss_pred Cceee-eEeEEEEEEc---CCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceE--Ee----ccceE
Q psy574 84 AGTRE-STDAVLRVLV---KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMS--VL----PSRSL 153 (977)
Q Consensus 84 ~g~~~-s~~~~l~V~~---~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~--~~----~~~~L 153 (977)
.|... +..+.|.|.. +|.+...| ...+.+|++++|.|.+.+.| +.+.|+|++..+...... .. ..+.|
T Consensus 81 ~g~~~~s~~~~l~V~~~~~~p~i~~~~-~~~v~~G~~v~L~C~~~~~p-~~~~W~k~g~~~~~~~~~~~~~~~~~~~~~L 158 (196)
T 2d3v_A 81 AGWSEPSDPLELVVTGFYNKPTLSALP-SPVVTSGENVTLQCGSRLRF-DRFILTEEGDHKLSWTLDSQLTPSGQFQALF 158 (196)
T ss_dssp TEECBCCCCEEEEEECSSCCCEEEC------------CEEEEEESSCC-SEEEEEEC---CCEEEEECEECTTSCEEEEE
T ss_pred CCcCCcCccEEEEecCCCCCCeEEccC-CccccCCCcEEEEEEcCCCC-CEEEEEccCCcccccccccccccCCCceeEE
Confidence 76433 5667888886 46665554 35789999999999999888 899999999887532211 21 12689
Q ss_pred EEccCccCCCeEEEEEEEeCCe
Q psy574 154 QLSDVRLEDAGEYVCEAENAVG 175 (977)
Q Consensus 154 ~I~~v~~~D~G~Y~C~a~n~~g 175 (977)
.|.+++.+|+|.|+|.|.|..+
T Consensus 159 ~I~~v~~~D~G~Y~C~a~n~~~ 180 (196)
T 2d3v_A 159 PVGPVTPSHRWMLRCYGSRRHI 180 (196)
T ss_dssp ECCCCBTTBCEEEEEEEEETTE
T ss_pred EeeecCcccCeeEEEEEEccCC
Confidence 9999999999999999999765
No 170
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}
Probab=99.85 E-value=3.8e-21 Score=195.20 Aligned_cols=178 Identities=18% Similarity=0.258 Sum_probs=135.6
Q ss_pred cccccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEe
Q psy574 3 LLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKN 82 (977)
Q Consensus 3 ~l~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n 82 (977)
+-+|.|...|.. .+.+|++++|.|.+ .+ |.+.+.|+|+|..+............++.|.|.+++.+|+|.|+|.|.|
T Consensus 3 ~~~P~i~~~p~~-~v~~G~~v~L~C~~-~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n 79 (196)
T 3p2t_A 3 LPKPTLWAEPGS-VISWGNSVTIWCQG-TL-EAREYRLDKEESPAPWDRQNPLEPKNKARFSIPSMTEDYAGRYRCYYRS 79 (196)
T ss_dssp BCCCEEEEESCS-EEETTCCEEEEEEC-CT-TCCEEEEEETTSCSCSEEECCCSSSSEEEEEESSCCGGGCEEEEEEEEE
T ss_pred CCCCEEEccCCC-cCCCCCcEEEEeeC-CC-CCCEEEEEECCCCCcccccccccCCceEEEEeccCCcccCceEEEEEeC
Confidence 347888999987 89999999999998 55 6789999999988743211111112346899999999999999999999
Q ss_pred cCc-eeeeEeEEEEEEc---CCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceE-----EeccceE
Q psy574 83 VAG-TRESTDAVLRVLV---KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMS-----VLPSRSL 153 (977)
Q Consensus 83 ~~g-~~~s~~~~l~V~~---~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~-----~~~~~~L 153 (977)
..| ...+..+.|.|.. +|.+...+.. .+.+|++++|.|.+.+. .+.+.|+|++..+...... ....+.|
T Consensus 80 ~~g~~~~s~~~~l~V~~~~~~p~~~~~~~~-~v~~G~~v~L~C~~~~~-~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~L 157 (196)
T 3p2t_A 80 PVGWSQPSDPLELVMTGAYSKPTLSALPSP-LVTSGKSVTLLCQSRSP-MDTFLLCKERAAHPLLCLRSEHGAQQHQAEF 157 (196)
T ss_dssp TTEEBCCCCCEEEEEECSSCCCEEEEESCS-EECTTCCEEEEEEEEEE-EEEEEEEETTCCCGGGSEEEEEEEEEEEEEE
T ss_pred CCcccCCCccEEEEecCCCCCCEEEeCCcc-eecCCCeEEEEEecCCC-CCEEEEEeCCCcccceeecccccccCcceEE
Confidence 887 3446677888863 4566655554 78899999999999874 4689999999877543322 1245789
Q ss_pred EEccCccCCCeEEEEEEEeCCe-----eEEEEEEEEE
Q psy574 154 QLSDVRLEDAGEYVCEAENAVG-----KISASATLTV 185 (977)
Q Consensus 154 ~I~~v~~~D~G~Y~C~a~n~~g-----~~~~~~~L~V 185 (977)
.|.+++.+|+|.|+|.|.|..+ ..+..+.|.|
T Consensus 158 ~i~~v~~~d~G~Y~C~a~n~~~~~~~s~~S~~~~l~V 194 (196)
T 3p2t_A 158 PMSPVTSVHGGTYRCFSSHGFSHYLLSHPSDPLELIV 194 (196)
T ss_dssp EECSCCGGGCEEEEEEEECGGGTTEECCCCCCEEEEE
T ss_pred EeCCCcccCCCeEEEEEEcCCCCcccCCCCCCEEEEe
Confidence 9999999999999999999875 2334455554
No 171
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.85 E-value=4.4e-21 Score=193.28 Aligned_cols=179 Identities=16% Similarity=0.151 Sum_probs=134.2
Q ss_pred cccccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEe
Q psy574 3 LLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKN 82 (977)
Q Consensus 3 ~l~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n 82 (977)
+-+|.|...|.. .+.+|++|+|.|.+ .+ +.+.+.|+|+|..+......+.....++.|.|.+++.+|+|.|+|.+.|
T Consensus 2 l~~P~i~~~p~~-~v~~G~~v~L~C~~-~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~ 78 (188)
T 1oll_A 2 LPKPFIWAEPHF-MVPKEKQVTICCQG-NY-GAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRV 78 (188)
T ss_dssp CCCCEEEEESCS-EEETTCCEEEEEEC-CT-TCCEEEEEETTEEEEEECCSSCTTCCEEEEEESSCCGGGCEEEEEEEEE
T ss_pred CCCCEEEeecCC-cCCCCCCEEEEEec-CC-CCCEEEEEECCCcccccccccCCCcceeEEEeCcCCcccCeEEEEEecC
Confidence 457889999987 89999999999998 44 3478999999998743211111112356899999999999999999988
Q ss_pred cCcee-eeEeEEEEEEc---CCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceEEeccceEEEccC
Q psy574 83 VAGTR-ESTDAVLRVLV---KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDV 158 (977)
Q Consensus 83 ~~g~~-~s~~~~l~V~~---~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~~~~~L~I~~v 158 (977)
..+.. .+..+.|.|.. +|.+...| ...+.+|++++|.|.+.+. .+.+.|+|++..+.........++.|.|.++
T Consensus 79 ~~~~~~~s~~~~l~V~~~~~~p~i~~~p-~~~v~~G~~v~L~C~~~~~-~~~~~w~k~g~~~~~~~~~~~~~~~L~I~~v 156 (188)
T 1oll_A 79 GELWSEPSNLLDLVVTEMYDTPTLSVHP-GPEVISGEKVTFYCRLDTA-TSMFLLLKEGRSSHVQRGYGKVQAEFPLGPV 156 (188)
T ss_dssp TTEECCCCCCEEEEEESCSCCCEEEEES-CSEEETTCEEEEEEECSSS-CSEEEEEEESSSCEEEEEECSSEEEEEEEEC
T ss_pred CCCCCCCCCceEEEecccCCCCeEEECC-CCccccCCEEEEEEEcCCC-CCEEEEEECCccccccccCCCceeEEEECCC
Confidence 65432 35667888874 57776666 4578999999999998764 4689999999877542222224578999999
Q ss_pred ccCCCeEEEEEEEeCCe---eEEEEEEEEEe
Q psy574 159 RLEDAGEYVCEAENAVG---KISASATLTVQ 186 (977)
Q Consensus 159 ~~~D~G~Y~C~a~n~~g---~~~~~~~L~V~ 186 (977)
+.+|+|.|+|.|.|... ..+..+.|.|.
T Consensus 157 ~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~ 187 (188)
T 1oll_A 157 TTAHRGTYRCFGSYNNHAWSFPSEPVKLLVT 187 (188)
T ss_dssp CGGGCEEEEEECEEETTEECCCCCCEEEEEE
T ss_pred CcCCCcEEEEEEEcCCCcCCCCCCcEEEEec
Confidence 99999999999998642 23445666653
No 172
>3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain, fibron type III, cell adhesion; 1.80A {Homo sapiens} PDB: 1x5k_A
Probab=99.85 E-value=3.3e-20 Score=190.64 Aligned_cols=194 Identities=16% Similarity=0.082 Sum_probs=149.4
Q ss_pred CCCCCCCCCeEEeeCCCceEEEEEcCCC---CCCcccceEEEEEeecCCCCCCCCCCCCcccEEEeceecCcCeEEEEcc
Q psy574 396 TYPGPPTKPTLVNQTANGLTLAWSRNNQ---IGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNL 472 (977)
Q Consensus 396 ~~p~~P~~~~v~~~~~~sv~lsW~~p~~---~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~i~~L 472 (977)
.++.+|.++.+...+.+++.|+|.+|.. ..++.+.+|.|+|+..... .|..........++++.+|
T Consensus 3 ~P~~~P~~l~~~~~~~~si~l~W~~p~~~~~~~~~~i~~Y~v~~~~~~~~-----------~~~~~~~~~~~~~~~i~~L 71 (211)
T 3p4l_A 3 LPMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPA-----------NTKYKNANATTLSYLVTGL 71 (211)
T ss_dssp CCCCCCEEEEEEECSSSCEEEEEECTTSCTTCCCCSSCEEEEEEEECC--------------CCCEEEEESSSEEEECSC
T ss_pred CCCCCCCCEEEEecCCCeEEEEEeCCCCCcccccCCCcEEEEEEEECCCC-----------cceEEEeCCCceEEEecCc
Confidence 4578999999999999999999998753 2357889999999875443 2222223566789999999
Q ss_pred CCCCeEEEEEEEEcCCCCCCCCCCCceEEeeccccccccccCCcceeecCCCCCCCcchHHHHhhcccccCCceEEEEEe
Q psy574 473 TVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEV 552 (977)
Q Consensus 473 ~p~t~Y~~~V~a~n~~G~s~~S~~s~~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~g~~~~~~~~~l~~~~~~~~~~l~~ 552 (977)
.|++.|.|+|+|.|..|.+.+|.... +.+....| +.++.++++
T Consensus 72 ~p~t~Y~~~V~A~n~~g~~~~S~~~~-~~t~~~~P------------------------------------~~~P~~~~~ 114 (211)
T 3p4l_A 72 KPNTLYEFSVMVTKGRRSSTWSMTAH-GTTFELVP------------------------------------TSPPKDVTV 114 (211)
T ss_dssp CTTCEEEEEEEEEETTEECCCCCCEE-EECCCCCC------------------------------------CSCCEEEEE
T ss_pred CCCCEEEEEEEEEcCCCCCccceeEe-eecccCCC------------------------------------CCCCcceEE
Confidence 99999999999999999887775422 23312222 123467888
Q ss_pred eEe--CCCeEEEEEEec--CCCccceEEEEEEecCCCC--CceEEEEeecCccceEEECCCCCCcEEEEEEEEeecceeC
Q psy574 553 KPM--TSTSVKLTWEIL--NTDYIEGVYIYSRGLDPPA--SVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDG 626 (977)
Q Consensus 553 ~~~--~~tsv~lsW~~p--~~~~i~~Y~v~y~~~~~~~--~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~g 626 (977)
... +.++|.|+|++| .++.+.+|.|+|+..+... .|....+ ..+.++++|.+|.|++.|.|+|+|.|..|.|
T Consensus 115 ~~~~~s~~sv~l~W~~p~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g 192 (211)
T 3p4l_A 115 VSKEGKPKTIIVNWQPPSEANGKITGYIIYYSTDVNAEIHDWVIEPV--VGNRLTHQIQELTLDTPYYFKIQARNSKGMG 192 (211)
T ss_dssp EEETTEEEEEEEEEECCTTCCSCCCEEEEEEESCTTSCGGGSEEEEE--ESSCSEEEECCCCTTCEEEEEEEEEETTEEC
T ss_pred EecCCCCCEEEEEECCCCCCCCCEEEEEEEEEECCCCCCCceEEEEe--cCCeeEEEEcCCCCCCEEEEEEEEEcCCccC
Confidence 887 478999999999 5678999999999876532 3443333 3578899999999999999999999999999
Q ss_pred CCCCceEEeccCC
Q psy574 627 KPSNLRAVRTLEC 639 (977)
Q Consensus 627 ~~s~~~~~~T~~~ 639 (977)
++|+.+.++|...
T Consensus 193 ~~S~~v~~~~~~~ 205 (211)
T 3p4l_A 193 PMSEAVQFRTPKA 205 (211)
T ss_dssp CCCCCEEEECC--
T ss_pred CCCCCEEccCccc
Confidence 9999999988764
No 173
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}
Probab=99.85 E-value=5.5e-20 Score=188.91 Aligned_cols=170 Identities=17% Similarity=0.242 Sum_probs=134.0
Q ss_pred EEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecC---cEEEEcCCCCCCCeEEEEEEEecCceeeeEeE
Q psy574 16 RVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG---TNLAIQDSRKTDDGRYQCVVKNVAGTRESTDA 92 (977)
Q Consensus 16 ~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~---g~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~~ 92 (977)
....++.+.|.|.+....|.+.|.|+|||..+.... |+.+..+ ..|.|.+++.+|+|.|+|.+.|..|... ..+
T Consensus 13 l~c~~~~~~l~C~~~~~~p~~~i~W~~~g~~i~~~~--~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~-~~~ 89 (212)
T 2r15_A 13 IQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSD--RVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQ-KTV 89 (212)
T ss_dssp EEECSSEEEEEEEBSSCCSSCEEEEEETTEECCCCS--SEEEEEETTEEEEEEESCCGGGCEEEEEEEECSSCEEE-EEE
T ss_pred EEEcCceEEEEEEEeccCCCceEEEEECCEEccCCC--eEEEEEeCCEEEEEECCCCcccCEEEEEEEecCCcceE-EEE
Confidence 345777888888884336789999999999996443 4444332 3499999999999999999999877644 445
Q ss_pred EEEEEc--------------------CC-eEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCC-ceEEecc
Q psy574 93 VLRVLV--------------------KP-YIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED-RMSVLPS 150 (977)
Q Consensus 93 ~l~V~~--------------------~P-~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~-~~~~~~~ 150 (977)
.|.|.. +| .+...|....+.+|+.+.|.|.+.|.|.+.+.|+|++..+... ++.+...
T Consensus 90 ~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~ 169 (212)
T 2r15_A 90 DLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFE 169 (212)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHHSCEEEEBCCSEEEEETTCCEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEE
T ss_pred EEEEeeccchhhhccccCcccccccCCCcccccCCCcEEEccCCeEEEEEEEcCCCCceEEEEECCeECccCCCEEEEEc
Confidence 555542 34 3444567789999999999999999999999999999988753 4444322
Q ss_pred ----ceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEEeeC
Q psy574 151 ----RSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMA 188 (977)
Q Consensus 151 ----~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~~~ 188 (977)
..|.|.+++.+|+|.|+|.|.|..|..+..+.|.|..|
T Consensus 170 ~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~P 211 (212)
T 2r15_A 170 AGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFIP 211 (212)
T ss_dssp TTTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred CCCEEEEEEcCcchHHCeEEEEEEEcCCCcEEEEEEEEEEcc
Confidence 38999999999999999999999999999999988743
No 174
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Probab=99.85 E-value=4.7e-20 Score=186.79 Aligned_cols=174 Identities=20% Similarity=0.342 Sum_probs=147.5
Q ss_pred cCCeEEeCCCceEEeCCCeEEEEEEec-ccCceEEEEEECCeeCCCC---ceEEe--c--------cceEEEccCccCCC
Q psy574 98 VKPYIIRGPKDTTVSASSIIVFECSVG-GDAVLTVHWKRLGSAMPED---RMSVL--P--------SRSLQLSDVRLEDA 163 (977)
Q Consensus 98 ~~P~~~~~p~~~~v~~G~~v~l~C~v~-g~p~~~i~W~k~~~~l~~~---~~~~~--~--------~~~L~I~~v~~~D~ 163 (977)
.+|.|...|.+..+.+|+++.|.|.+. |.|.+.+.|+|++..+... ++.+. . .+.|.|.+++.+|+
T Consensus 1 e~~~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~ 80 (195)
T 2c5d_C 1 EESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDT 80 (195)
T ss_dssp -CCSEEECCCCEEECTTCCEEEEEEEEEESSCCCCEEEETTEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCSTTC
T ss_pred CCCeeccChhheEEecCCcEEEecccccCCCCcEEEEEECCEEcccCCCCceEEEEccccccceeeccEEEEEeccccCC
Confidence 368899999999999999999999998 9999999999999998765 22332 2 36899999999999
Q ss_pred eEEEEEEEeCCeeEE-EEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEEecCCCC-eEEEEEcCeeeeecCCCccccEE
Q psy574 164 GEYVCEAENAVGKIS-ASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPP-STFWMLEGNRSLIYPGDRVDNIQ 241 (977)
Q Consensus 164 G~Y~C~a~n~~g~~~-~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~-~i~W~~~g~~~~~~~~~~~~~~~ 241 (977)
|.|+|.+.|..+... ..+.|.|..+|.+...|....+.+|+.++|.|.+.+.|.+ .+.|++++..+..... .
T Consensus 81 G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~-----~- 154 (195)
T 2c5d_C 81 GQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPG-----H- 154 (195)
T ss_dssp EEEEEEEEETTEEEECCCEEEEECCSCEEEECCCCEEECTTCCEEEEEEEECSSCCCEEEEEESSCBSSSSTT-----S-
T ss_pred cEEEEEEEeCCCceecccEEEEEecCCeEEcCCCcEEEcCCCEEEEEeECCCCCCCCEEEEEECCEeccCCCC-----c-
Confidence 999999999888754 4489999999999999999999999999999999999999 9999999987642211 1
Q ss_pred EEEccCCceEEEEeecccCCCCeEEEEEEEcCCCcee-EEEEEEE
Q psy574 242 AEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDL-ARASLTV 285 (977)
Q Consensus 242 ~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~-~~~~l~V 285 (977)
. ....|.|.+++ |+|.|+ |.|.|..|... ..+.|.|
T Consensus 155 ---~--~~~~L~i~~~~--d~G~Y~-C~a~N~~g~~~s~~~~l~V 191 (195)
T 2c5d_C 155 ---G--PQRSLHVPGLN--KTSSFS-CEAHNAKGVTTSRTATITV 191 (195)
T ss_dssp ---S--CCEEEEECCCS--SCEEEE-EEEEETTEEEECCCEEEEE
T ss_pred ---C--CCCeEEEcccc--cCceEE-EEEEcCCCceEEEEEEEEE
Confidence 1 23489999987 789999 99999999885 6788887
No 175
>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A*
Probab=99.85 E-value=1.1e-20 Score=217.38 Aligned_cols=183 Identities=15% Similarity=0.131 Sum_probs=140.2
Q ss_pred EEEEeeEeCCCeEEEEEEec--CC-CccceEEEEEEecCC-CCCce-------EEEEeecCccceEEECCCCCCcEEEEE
Q psy574 548 ELTEVKPMTSTSVKLTWEIL--NT-DYIEGVYIYSRGLDP-PASVA-------MLTVLHAGEASGFLVTGLAHYSRYEFF 616 (977)
Q Consensus 548 ~~l~~~~~~~tsv~lsW~~p--~~-~~i~~Y~v~y~~~~~-~~~~~-------~~~~~~~~~~~~~~i~~L~p~t~Y~~~ 616 (977)
.++. ..++.++|.|+|++| .+ ..+.+|.|+|+..+. ...|. ..........++++|.+|.|++.|.|+
T Consensus 338 ~nl~-~~vs~tSv~LsW~pP~~~gG~~i~~Y~V~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~ts~tI~gL~P~T~Y~fr 416 (536)
T 3fl7_A 338 HYLT-AVGMGAKVELRWTPPQDSGGREDIVYSVTCEQCWPESGECGPCEASVRYSEPPHGLTRTSVTVSDLEPHMNYTFT 416 (536)
T ss_dssp SCEE-EECCTTSEEEEECCBSCCCSCSCCEEEEEEEEECC-CCCEEECCTTCEESSCSSSBCSSEEEEECCCTTCEEEEE
T ss_pred cceE-EEecCCEEEEEEeCCcCCCCCceeEEEEEEEeccCCCCcccccCCCceEEEeecCCccceeEeCCCCCCCEEEEE
Confidence 4453 468899999999999 33 379999999998542 11221 111112245789999999999999999
Q ss_pred EEEeeccee---CCCCCceEEeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCcceEEEE
Q psy574 617 LVPFFGSVD---GKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMT 693 (977)
Q Consensus 617 V~a~n~~g~---g~~s~~~~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~~~~~~~ 693 (977)
|+|.|..|. ++.+..+.++|.+.+|+ .+.+...+.++|.|+|++| ...+|.|++|+|+|+..+.. .....
T Consensus 417 V~A~N~~G~~sps~~s~~v~v~T~~~~Ps----~~~~~~~s~tSV~LsW~pP--~~~ng~I~~Y~V~y~~~~~~-~~~~~ 489 (536)
T 3fl7_A 417 VEARNGVSGLVTSRSFRTASVSINQTEPP----KVRLEGRSTTSLSVSWSIP--PPQQSRVWKYEVTYRKKGDS-NSYNV 489 (536)
T ss_dssp EEEECTTGGGCSCCCEEEEEEECCSCCCC----EEEEEECCC-CCEEEEECC--TTTTTTCSEEEEEEEEC--C-CCCEE
T ss_pred EEEEecCCCCCCCCccceeEEeecccCCC----CCceeeccCCeEEEEEECC--cCCCCcccEEEEEEEECCCC-ceEEE
Confidence 999999987 44667788888876664 4444677889999999998 78899999999999986533 33445
Q ss_pred ecCCcCeEEecCCCCCceEEEEEEEEcCCCcCCCCCceEEeecCC
Q psy574 694 VSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSG 738 (977)
Q Consensus 694 ~~~~~~~~~l~~L~p~t~Y~~~V~A~~~~G~g~~S~~~~~~t~~~ 738 (977)
+....++++|.+|+|++.|.|+|+|+|.+|.|++|+++.++|.+.
T Consensus 490 v~~~~ts~~l~gL~P~T~Y~frVrA~n~~G~Gp~S~~v~~~T~~~ 534 (536)
T 3fl7_A 490 RRTEGFSVTLDDLAPDTTYLVQVQALTQEGQGAGSKVHEFQTLSP 534 (536)
T ss_dssp EEESSSEEECCSCCSSCEEEEEEEEECC---CEECCCEEEECCC-
T ss_pred EcCCCCEEEECCCCCCCEEEEEEEEEcCCcccCCCCCEEEEeCCC
Confidence 567889999999999999999999999999999999999998654
No 176
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}
Probab=99.85 E-value=2.6e-20 Score=187.44 Aligned_cols=180 Identities=19% Similarity=0.306 Sum_probs=147.1
Q ss_pred CCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCC---CCceEEeccceEEEccCccCCCeEEEEEEEeCCe
Q psy574 99 KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMP---EDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVG 175 (977)
Q Consensus 99 ~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~---~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g 175 (977)
+|.|...|.+..+.+|+++.|.|.+.+.|.+.+.|++++..+. ..++....+++|.|.+++.+|+|.|+|.+.|..+
T Consensus 2 ~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~ 81 (189)
T 2v5t_A 2 MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEAR 81 (189)
T ss_dssp CCEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEC-----CBCCCTTEEECTTSCEEETTCCGGGCEEEEEEEEETTT
T ss_pred CceeeccCCCEEEeCCCcEEEEEEEcCCCCCEEEEEECCccceeccCCeEEEecCCCEEEeeCCHhHCcEEEEEEEEcCC
Confidence 6788899999999999999999999999999999999988764 4567777788999999999999999999999864
Q ss_pred e--EEEEEEEEEeeCCeEEecCC--CcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCccccEEEEEccCCceE
Q psy574 176 K--ISASATLTVQMAPIVRERPS--DLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNL 251 (977)
Q Consensus 176 ~--~~~~~~L~V~~~p~~~~~p~--~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~s~ 251 (977)
. ....+.|.|..+|.+...+. ...+.+|+.++|.|.+.+.|.+.+.|+++|..+. ...++.... ....
T Consensus 82 ~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~~~-----~~~~~~~~~---~~~~ 153 (189)
T 2v5t_A 82 GEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIE-----ENEKYILKG---SNTE 153 (189)
T ss_dssp TEEEEEEEEEEEEEEEEEECSCCEEEEETTSCCCEEEECEEEEESCCEEEEEETTEECC-----CSSSEEEET---TTTE
T ss_pred CceEEEEEEEEecCCCCcccccccccccccCCCcEEEEEEEccCCCCeEEEEECCEECc-----CCCcEEEec---CCCE
Confidence 3 34667888888888776655 3466789999999999999999999999998763 233444432 2348
Q ss_pred EEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEEC
Q psy574 252 LKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSG 287 (977)
Q Consensus 252 L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~ 287 (977)
|.|.++..+|+|.|+ |.|.|..|....++.|.|..
T Consensus 154 L~i~~~~~~d~G~Y~-C~a~n~~g~~~~~~~l~V~v 188 (189)
T 2v5t_A 154 LTVRNIINSDGGPYV-CRATNKAGEDEKQAFLQVFV 188 (189)
T ss_dssp EEECSCCGGGCEEEE-EEEEETTEEEEEEEEEEEEC
T ss_pred EEEcCCChhhCeeEE-EEEEeCCCceeEEEEEEEEe
Confidence 999999999999999 99999999999888888764
No 177
>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*
Probab=99.84 E-value=7.7e-21 Score=193.26 Aligned_cols=168 Identities=14% Similarity=0.239 Sum_probs=130.4
Q ss_pred ceEEeCCCeEEEEEE---ecccCceEEEEEECCeeCCC------------------CceEEe---ccceEEEccCccCCC
Q psy574 108 DTTVSASSIIVFECS---VGGDAVLTVHWKRLGSAMPE------------------DRMSVL---PSRSLQLSDVRLEDA 163 (977)
Q Consensus 108 ~~~v~~G~~v~l~C~---v~g~p~~~i~W~k~~~~l~~------------------~~~~~~---~~~~L~I~~v~~~D~ 163 (977)
++++..|++++|.|. +.+.|.+.|.|+|++..+.. .++.+. ....|.|.+++.+|+
T Consensus 2 ~Vta~~Ge~v~L~C~~~~v~~~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~ 81 (203)
T 4fa8_A 2 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD 81 (203)
T ss_dssp CCEEETTCCEEEEEECSSTTCSTTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEETTEEEEEESSCCGGGC
T ss_pred CeEEEcCCCEEEEeeeeccCCCCCcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEcCCEEEEEEccCCHHHC
Confidence 467899999999995 56789999999998754321 122221 235799999999999
Q ss_pred eEEEEEEEeCCeeEEEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCccccEEEE
Q psy574 164 GEYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAE 243 (977)
Q Consensus 164 G~Y~C~a~n~~g~~~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~ 243 (977)
|.|+|.|.|..|..+..+.|.|..||.+...+....+.+|+.++|.|.+.|.|.|.|.|++++..+.. +.....++.+.
T Consensus 82 G~Y~C~a~n~~g~~~~~~~l~V~~p~~~~~~~~~~~v~~g~~~~l~C~~~G~P~P~v~W~~~~~~~~~-~~~~~~r~~~~ 160 (203)
T 4fa8_A 82 GNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPA-PTAANGGVMKE 160 (203)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEEEEEEEEEEEEECCSSCSCCEEEEEEEEEESCCEEEECCC-------------CCEEC
T ss_pred eEEEEEEEcCCCcEEEEEEEEecCCceeeecceeEEEcCCCEEEEEEEcCCCCCCEEEEEECCeeecC-cccccceEEEe
Confidence 99999999999999999999999999999888888999999999999999999999999987765432 11223445444
Q ss_pred EccCCc-eEEEEeecccCCCCeEEEEEEEcCCCceeE
Q psy574 244 ITSDGM-NLLKIQNVSRTAAPLIILCLGVNAAGSDLA 279 (977)
Q Consensus 244 ~~~~g~-s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~ 279 (977)
. +|. ..|.|.+++.+|+|.|+ |.|.|..|....
T Consensus 161 ~--~g~l~il~i~~v~~~D~G~Yt-C~A~N~~G~a~~ 194 (203)
T 4fa8_A 161 K--DGSLSVAVDLSLPKPWHLPVT-CVGKNDKEEAHG 194 (203)
T ss_dssp T--TSCEEEEEEEEECSSCCCCEE-EEEESSSCEEEE
T ss_pred C--CCCEEEEEECCCCHHHCEEEE-EEEEcCCCEEEE
Confidence 3 343 45667899999999999 999999997754
No 178
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A
Probab=99.84 E-value=7.6e-21 Score=193.27 Aligned_cols=178 Identities=16% Similarity=0.185 Sum_probs=130.9
Q ss_pred ccccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEec
Q psy574 4 LREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNV 83 (977)
Q Consensus 4 l~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~ 83 (977)
-+|.|...|. ..+.+|++++|.|.+ .+.|. .+.|+|||..+......+.....++.|.|.+++.+|+|.|+|.+.|.
T Consensus 4 ~~P~i~~~p~-~~v~~G~~v~L~C~~-~~~~~-~~~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~ 80 (198)
T 1ugn_A 4 PKPTLWAEPG-SVITQGSPVTLRCQG-GQETQ-EYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYYGSD 80 (198)
T ss_dssp CCCEEEEESC-SEEETTCCEEEEEEC-CTTCC-CEEEEESSSCCHHHHTSCHHHHTTTEEEESSCCGGGCEEEEEEEEET
T ss_pred CCCeEeccCC-CcccCCCcEEEEEEe-cCCCc-EEEEEECCccccccccccccCCcccEEEECCCCHHHCeEEEEEEECC
Confidence 4678888887 589999999999999 66665 69999999887422111111234678999999999999999999998
Q ss_pred C-ce-eeeEeEEEEEEc---CCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceE--Ee----ccce
Q psy574 84 A-GT-RESTDAVLRVLV---KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMS--VL----PSRS 152 (977)
Q Consensus 84 ~-g~-~~s~~~~l~V~~---~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~--~~----~~~~ 152 (977)
. |. ..+..+.|.|.. +|.+...+ ...+.+|++++|.|.+.+. .+.+.|+|++..+...... .. ..+.
T Consensus 81 ~~g~~~~s~~~~l~V~~~~~~p~i~~~~-~~~v~~G~~v~L~C~~~~~-~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~ 158 (198)
T 1ugn_A 81 TAGRSESSDPLELVVTGAYIKPTLSAQP-SPVVNSGGNVTLQCDSQVA-FDGFILCKEGEDEHPQCLNSQPHARGSSRAI 158 (198)
T ss_dssp TTEECCCCCCEEEEEECSSCCCEEEEES-CSEEETTCCEEEEEECSSC-CSEEEEEEC------CEEEC------CCEEE
T ss_pred CCCcccCCccEEEEEcccccCCccccCC-ccccCCCCcEEEEEecCCC-CcEEEEEECCCccCCccccccccCCCcceeE
Confidence 7 53 235668888886 45555544 4688999999999999887 6799999999887543222 11 2378
Q ss_pred EEEccCccCCCeEEEEEEEeCCee-----EEEEEEEEEe
Q psy574 153 LQLSDVRLEDAGEYVCEAENAVGK-----ISASATLTVQ 186 (977)
Q Consensus 153 L~I~~v~~~D~G~Y~C~a~n~~g~-----~~~~~~L~V~ 186 (977)
|.|.+++.+|+|.|+|.|.|..+. .+..+.|.|.
T Consensus 159 L~i~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~ 197 (198)
T 1ugn_A 159 FSVGPVSPSRRWWYRCYAYDSNSPYEWSLPSDLLELLVL 197 (198)
T ss_dssp EEECCCCTTSCEEEEEEEECTTSTTEECCCCCCEEEEEE
T ss_pred EEecccCcccCeEEEEEEEeCCCCccccCcCceEEEEec
Confidence 999999999999999999998652 2445566553
No 179
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Probab=99.84 E-value=4.3e-20 Score=192.34 Aligned_cols=185 Identities=28% Similarity=0.436 Sum_probs=145.0
Q ss_pred cccceecc----cceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCc-e-EEEecCcEEEEcCCCCCCCeEEEE
Q psy574 5 REEFRVQP----KSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSK-R-LRLVDGTNLAIQDSRKTDDGRYQC 78 (977)
Q Consensus 5 ~~~~~~~p----~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~-r-~~~~~~g~L~I~~v~~~D~G~Y~C 78 (977)
.|.|...| ....+.+|++++|.|.+ .+.|.+.|.|+|+|..+...... . .....++.|.|.+++.+|+|.|+|
T Consensus 15 ~P~~~~~~~~~~~~~~v~~G~~v~L~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 93 (231)
T 3ojm_B 15 APYWTNTEKMEKRLHAVPAANTVKFRCPA-GGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTC 93 (231)
T ss_dssp EEEESCGGGGCCSCEEEETTSCEEEECCE-EEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEE
T ss_pred CCccccccccCceeEEEccCCCEEEEEec-ccCCCCeEEEEECCccccccccccceeeecCcceEEEecCCcccCEEEEE
Confidence 45565555 78899999999999998 78899999999999998543221 1 222335689999999999999999
Q ss_pred EEEecCceeeeEeEEEEEEcC----CeEEe-CCCceEEeCCCeEEEEEEecccCceEEEEEE----CCeeCCCCce---E
Q psy574 79 VVKNVAGTRESTDAVLRVLVK----PYIIR-GPKDTTVSASSIIVFECSVGGDAVLTVHWKR----LGSAMPEDRM---S 146 (977)
Q Consensus 79 ~a~n~~g~~~s~~~~l~V~~~----P~~~~-~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k----~~~~l~~~~~---~ 146 (977)
.+.|..|.. ...+.|.|..+ |.+.. .+....+.+|+.+.|.|.+.|.|.+.+.|++ ++..+..+.. .
T Consensus 94 ~~~n~~~~~-~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~ 172 (231)
T 3ojm_B 94 VVENEYGSI-NHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLK 172 (231)
T ss_dssp EEEETTEEE-EEEEEEEEECCCCCCCEECTTCSCCEEEETTCCEEEECCEECSSCCEEEEEEECCBTTBSBCTTSCBCEE
T ss_pred EEecccCcc-cccEEEEEEcCCCCCCceeeccCCceEEEeCCcEEEEEEEecCCCCEEEEEECCCCCCccccCCCcceEe
Confidence 999988764 45678888753 33332 3567789999999999999999999999999 7766643211 1
Q ss_pred E--------eccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEEeeCCeE
Q psy574 147 V--------LPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIV 191 (977)
Q Consensus 147 ~--------~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~~~p~~ 191 (977)
. .....|.|.++..+|+|.|+|.|.|..|..+..+.|.|..+|..
T Consensus 173 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~ 225 (231)
T 3ojm_B 173 VLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQA 225 (231)
T ss_dssp EEEECSTTCSCTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCC--
T ss_pred EecccccccCCccEEEEecCCHHHCeEEEEEEEeccceEeeEEEEEEecCCCC
Confidence 1 12357999999999999999999999999999999999977654
No 180
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A
Probab=99.84 E-value=2.1e-20 Score=190.40 Aligned_cols=178 Identities=17% Similarity=0.269 Sum_probs=133.0
Q ss_pred cceecccceEEe-CCCcEEEEEECCCCCCCCeEEEEeCC-EEeecCCCceEEEe-cCcEEEEcCCCCCCCeEEEEEEEec
Q psy574 7 EFRVQPKSQRVA-AGDTALLECGPPRGHPEPTLVWKKNG-HPIDFENSKRLRLV-DGTNLAIQDSRKTDDGRYQCVVKNV 83 (977)
Q Consensus 7 ~~~~~p~~~~v~-~G~~v~L~C~~~~g~P~~~v~W~k~g-~~l~~~~~~r~~~~-~~g~L~I~~v~~~D~G~Y~C~a~n~ 83 (977)
++++.|.+..+. +|++++|.|.+ .|.|.+.|.|+|+. ..+ .++.... .++.|.|.+++.+|+|.|+|.|.|.
T Consensus 2 ~v~i~p~~~~~~~~G~~v~L~C~~-~g~P~p~i~W~~~~~~~~----~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~ 76 (202)
T 1vca_A 2 KIETTPESRYLAQIGDSVSLTCST-TGCESPFFSWRTQIDSPL----NGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCE 76 (202)
T ss_dssp EEEEESSSEEEEETTSCEEEEEEE-ESCSSCEEEEEETTCCCC----SSEEEEETTEEEEEESSCCGGGCSEEEEEEEET
T ss_pred eEEECCCCcEEEcCCCcEEEEEee-cCCCCCeEEEECCCCCCc----cceEEEcCCccEEEECcCCHHHCEEEEEEEEEC
Confidence 467788776554 99999999999 78999999999843 222 1222222 3457999999999999999999998
Q ss_pred CceeeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEeccc-Cc--eEEEEEECCeeCCCCceE--------Eeccce
Q psy574 84 AGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGD-AV--LTVHWKRLGSAMPEDRMS--------VLPSRS 152 (977)
Q Consensus 84 ~g~~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~-p~--~~i~W~k~~~~l~~~~~~--------~~~~~~ 152 (977)
.|. .+..+.|.|..+|..........+.+|+.++|.|.+.|. |. +.|.|+|++..+...... ......
T Consensus 77 ~~~-~~~~~~l~V~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~ 155 (202)
T 1vca_A 77 SRK-LEKGIQVEIYSFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLE 155 (202)
T ss_dssp TEE-EEEEEEEEEEBCCSCCEEEESSCEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEE
T ss_pred Cce-EeeEEEEEEEeCCCCCEeCCceEEcCCCCEEEEEEECCcCCCCCeEEEEEeCCeECcccccccccCcCcceEEEEE
Confidence 775 456789999987753322222678999999999999775 43 489999999876432110 112345
Q ss_pred EEEccCccCCCeEEEEEEEeCCee-------EEEEEEEEEeeCCe
Q psy574 153 LQLSDVRLEDAGEYVCEAENAVGK-------ISASATLTVQMAPI 190 (977)
Q Consensus 153 L~I~~v~~~D~G~Y~C~a~n~~g~-------~~~~~~L~V~~~p~ 190 (977)
|.|..+..+|.|.|+|+|.|..+. .++.+.|.|..+|.
T Consensus 156 l~i~~~~~d~~g~ytC~A~n~~~~~~~~~~~~~~~~~L~V~y~P~ 200 (202)
T 1vca_A 156 VTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVYISPK 200 (202)
T ss_dssp EEECCCGGGTTCEEEEEEEECSCCCTTSCSEEEEEEECCEECCC-
T ss_pred EEEEeeeccCCCeEEEEEEccccCCCCcceeEeeEEEEEEecCCC
Confidence 778888899999999999998764 46788899988875
No 181
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}
Probab=99.84 E-value=8.6e-21 Score=190.38 Aligned_cols=158 Identities=18% Similarity=0.202 Sum_probs=127.6
Q ss_pred ccccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEec
Q psy574 4 LREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNV 83 (977)
Q Consensus 4 l~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~ 83 (977)
-+|.|.+.|.. .+.+|++++|.|.+ .+ |.+.+.|+|+|... ...++.|.|.+++.+|+|.|+|.+.|.
T Consensus 7 ~~P~i~~~p~~-~v~~G~~v~L~C~~-~~-~~~~~~W~k~g~~~---------~~~~~~L~i~~v~~~D~G~Y~C~a~n~ 74 (184)
T 2gi7_A 7 PKPSLQALPSS-LVPLEKPVTLRCQG-PP-GVDLYRLEKLSSSR---------YQDQAVLFIPAMKRSLAGRYRCSYQNG 74 (184)
T ss_dssp CCCEEEEESCS-EEETTCCEEEEEEC-ST-TCSEEEEEETTTCC---------EESSSEEEESSCCGGGCEEEEEEEEET
T ss_pred CCCeEEeCCCc-cccCCCcEEEEEeC-CC-CCCEEEEEECCccc---------cCcccEEEECcCChhhCceEEEEEEcC
Confidence 35777888875 89999999999998 55 77899999998761 234678999999999999999999998
Q ss_pred Cce-eeeEeEEEEEEc---CCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceEEeccceEEEccCc
Q psy574 84 AGT-RESTDAVLRVLV---KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVR 159 (977)
Q Consensus 84 ~g~-~~s~~~~l~V~~---~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~ 159 (977)
.|. ..+..+.|.|.. +|.+...| +..+.+|++++|.|.+.+.+ +.+.|+|++..+..........+.|.|.+++
T Consensus 75 ~g~~~~s~~~~l~V~~~~~~p~i~~~p-~~~v~~G~~v~l~C~~~~~~-~~~~w~k~g~~~~~~~~~~~~~~~L~i~~v~ 152 (184)
T 2gi7_A 75 SLWSLPSDQLELVATGVFAKPSLSAQP-GPAVSSGGDVTLQCQTRYGF-DQFALYKEGDPAPYKNPERWYRASFPIITVT 152 (184)
T ss_dssp TEEBCCCCCEEEEEESSSCCCEEEEEC-CCSSCCTTCEEEEEECSSCC-CEEEEEECCCCTTSCCCCEEEEESSSEEEET
T ss_pred CCccCCCCCEEEEecCcCCCCEEEeCC-CceecCCCcEEEEEEcCCCC-cEEEEEECCCcCcceecCCCceEEEEEccCC
Confidence 764 335667888853 56676666 55778999999999987665 6999999998876533233356789999999
Q ss_pred cCCCeEEEEEEEeCCe
Q psy574 160 LEDAGEYVCEAENAVG 175 (977)
Q Consensus 160 ~~D~G~Y~C~a~n~~g 175 (977)
.+|+|.|+|.|.|..+
T Consensus 153 ~~D~G~Y~C~a~n~~~ 168 (184)
T 2gi7_A 153 AAHSGTYRCYSFSSRD 168 (184)
T ss_dssp TCCSEEEEEEEECTTS
T ss_pred ccCCeEEEEEEEeCCC
Confidence 9999999999999754
No 182
>3n06_B PRL-R, prolactin receptor; PH dependence, hematopoietic cytokine, hormone-hormone recep complex; 2.00A {Homo sapiens} PDB: 3mzg_B 3n0p_B 3ncb_B 1bp3_B 3d48_R 3nce_B 3ncc_B 3ncf_B 3ew3_B 3npz_B 1f6f_B 2lfg_A
Probab=99.84 E-value=2.3e-19 Score=184.20 Aligned_cols=193 Identities=11% Similarity=0.101 Sum_probs=150.3
Q ss_pred CceEEEEEeeEeCCCeEEEEEEec-CCCccceEEEEEEecCCCCCceEEEEeecCccceEEE--CCCCCCcEEEEEEEEe
Q psy574 544 GSLIELTEVKPMTSTSVKLTWEIL-NTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLV--TGLAHYSRYEFFLVPF 620 (977)
Q Consensus 544 ~~~~~~l~~~~~~~tsv~lsW~~p-~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i--~~L~p~t~Y~~~V~a~ 620 (977)
+..|+++++...+.++|+|+|+++ ..+....|.|+|+..+ ...|..+.........++.+ .+|.+++.|.|+|.|.
T Consensus 4 P~~P~nl~c~~~~~~~~~c~W~p~~~~~~~~~Y~l~y~~~~-~~~~~~c~~~~~~~~~~c~~~~~~l~~~~~Y~~~V~A~ 82 (210)
T 3n06_B 4 PGKPEIFKCRSPNKETFTCWWRPGTDGGLPTNYSLTYHREG-ETLMHECPDYITGGPNSCHFGKQYTSMWRTYIMMVNAT 82 (210)
T ss_dssp CCCCEEEEEEBSSSSCEEEEEECCSSSCCCSEEEEEEEETT-CCCCEECSCSSTTCTTEEEECGGGCCSSSCEEEEEEEE
T ss_pred CCCCeEeEEEeCCCCeEEEEECCCCCCCCCceEEEEEEECC-CCccccCCCCCCCCCeEEEeCCCCcccceeEEEEEEEE
Confidence 445689999999999999999998 4444689999999876 34565543222123345555 5699999999999999
Q ss_pred ecceeCCCCCceEEeccCCCCCCCCceeEEEEec----CcEEEEEeeCCCCCC-CCe-eeeEEEEEEEecCCcceEEEEe
Q psy574 621 FGSVDGKPSNLRAVRTLECEPSGVPQLTDPVLLN----ATSVLLKWKPPPVGT-HNG-VIRTYQIIVGGGNNSALINMTV 694 (977)
Q Consensus 621 n~~g~g~~s~~~~~~T~~~~P~~~P~~v~~~~~~----~~sv~v~W~~p~~~~-~ng-~i~~Y~v~~~~~~~~~~~~~~~ 694 (977)
|..|.+ .+..+.+.+.+.++++||.++.+...+ .+++.|+|++|.... .+| .+.+|+|+|+..+...+... .
T Consensus 83 N~~G~~-~s~~~~~~~~~~v~p~pP~~l~~~~~~~~~~~~~l~l~W~~p~~~~~~~g~~~~~Y~v~y~~~~~~~~~~~-~ 160 (210)
T 3n06_B 83 NQMGSS-FSDELYVDVTYIVQPDPPLELAVEVKQPEDRKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAAEWEIH-F 160 (210)
T ss_dssp ETTEEE-ECCCEEECGGGCBCCCCCEEEEEEEECCSSSCCEEEEEEECCTTCCCTTSSCCEEEEEEEECTTCSSCEEE-E
T ss_pred cCCCCe-eCCcEEEchhheEecCCCceEEEEEecCcCCCceEEEEcCCCCCccccCCeEEEEEEEEEecCCCCCCEEE-e
Confidence 999988 456677888777777899999988754 579999999996433 235 57999999998653333322 3
Q ss_pred cCCcCeEEecCCCCCceEEEEEEEEcCCCc-CCCCCceEEeecCCC
Q psy574 695 SASTPTLLLTNLSAGIRYSVSLAATNRAGT-GPYSRPALLSLTSGP 739 (977)
Q Consensus 695 ~~~~~~~~l~~L~p~t~Y~~~V~A~~~~G~-g~~S~~~~~~t~~~~ 739 (977)
....+++.|.+|+|++.|.|+|+|.+..|. |.||+++.|+|++..
T Consensus 161 ~~~~~~~~l~~L~p~t~Y~v~Vra~~~~g~wS~wS~~~~~~Tp~~~ 206 (210)
T 3n06_B 161 AGQQTEFKILSLHPGQKYLVQVRCKPDHGYWSAWSPATFIQIPSDF 206 (210)
T ss_dssp EETCSEEEECCCCTTCEEEEEEEEEESSSCCCCCCCCEEEECCTTC
T ss_pred ccCceEEEEeccCCCCEEEEEEEEecCCCcccCCCCceeEECcCCC
Confidence 446789999999999999999999999997 999999999997654
No 183
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, IG, membrane, homphilic, glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB: 2xy2_A* 2vaj_A
Probab=99.84 E-value=1.1e-19 Score=182.90 Aligned_cols=176 Identities=22% Similarity=0.403 Sum_probs=144.2
Q ss_pred EEeCCCceEEeCCCeEEEEEEecccCceEEEEEE-CCeeCCC-CceEEecc---ceEEEccCccCCCeEEEEEEEeCCee
Q psy574 102 IIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKR-LGSAMPE-DRMSVLPS---RSLQLSDVRLEDAGEYVCEAENAVGK 176 (977)
Q Consensus 102 ~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k-~~~~l~~-~~~~~~~~---~~L~I~~v~~~D~G~Y~C~a~n~~g~ 176 (977)
+...|.+..+.+|+++.|.|.+.|.|. .+.|+| ++..+.. .++.+..+ ..|.|.+++.+|+|.|+|.+.|..|.
T Consensus 5 ~~~~~~~~~v~~G~~v~L~C~~~~~p~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~ 83 (189)
T 2v44_A 5 VTISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQ 83 (189)
T ss_dssp EEESCSEEEEETTCCEEEEEEEEECCS-EEEEECTTSCBCCCCSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECTTSC
T ss_pred EEecCCceEEecCCcEEEEEEeecCCe-eEEEEeCCCCccCCCceEEEECCCCeEEEEEccCCcccCeEEEEEEEeCCCC
Confidence 556778889999999999999998887 899999 6666643 45555443 48999999999999999999998886
Q ss_pred E-EEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCccccEEEEEccCCceEEEEe
Q psy574 177 I-SASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQ 255 (977)
Q Consensus 177 ~-~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~s~L~I~ 255 (977)
. +..+.|.|..+|.+...+....+.+|+.++|.|.+.+.|.+.+.|++++..+... ...++.... ++ .|.|.
T Consensus 84 ~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~---~~~~~~~~~--~~--~L~i~ 156 (189)
T 2v44_A 84 TQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTI---SDNRFAMLA--NN--NLQIL 156 (189)
T ss_dssp EEEEEEEEEEECCCEEESCCCSEEEETTSCEEECCEEECSSCCEEEEEEEC--CEEC---CCTTEEECT--TS--CEEET
T ss_pred cEEEEEEEEEecCCceeecCCcEEEeCCCCEEEEEEECcCCCCcEEEEECCcEEecc---CCCCEEEec--CC--cEEEE
Confidence 4 7788999999999988888889999999999999999999999999999876432 233444432 34 89999
Q ss_pred ecccCCCCeEEEEEEEcCCCceeEEEEEEEE
Q psy574 256 NVSRTAAPLIILCLGVNAAGSDLARASLTVS 286 (977)
Q Consensus 256 ~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~ 286 (977)
++..+|+|.|+ |.|.|..+.......+.|.
T Consensus 157 ~v~~~d~G~Y~-C~a~n~~~~~~~~~~~~v~ 186 (189)
T 2v44_A 157 NINKSDEGIYR-CEGRVEARGEIDFRDIIVI 186 (189)
T ss_dssp TCCGGGCEEEE-EEEEETTTTEEEEEEEEEE
T ss_pred EcCcccCeEEE-EEEEccccCceeeeeEEEE
Confidence 99999999999 9999999877655555443
No 184
>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}
Probab=99.84 E-value=3.3e-18 Score=200.65 Aligned_cols=260 Identities=20% Similarity=0.246 Sum_probs=174.1
Q ss_pred eCCCceEEeCCCeEEEEEEecccCc----eEEEEEECC--eeC-----------------CCCceEEec-----cceEEE
Q psy574 104 RGPKDTTVSASSIIVFECSVGGDAV----LTVHWKRLG--SAM-----------------PEDRMSVLP-----SRSLQL 155 (977)
Q Consensus 104 ~~p~~~~v~~G~~v~l~C~v~g~p~----~~i~W~k~~--~~l-----------------~~~~~~~~~-----~~~L~I 155 (977)
..|....+.+|++++|.|.+.+.+. ..+.|+|+. ..+ ..+|+.+.. +.+|.|
T Consensus 5 ~qp~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I 84 (512)
T 1zvo_C 5 QESGPGLVKPSETLSLTCIVSGGPIRRTGYYWGWIRQPPGKGLEWIGGVYYTGSIYYNPSLRGRVTISVDTSRNQFSLNL 84 (512)
T ss_pred ECCCCEEEcCCCCEEEEEEEcccccCCCCeeEEEEEeCCCCCcEEEEEEecCCCEEECCccCCceEEEecCCCCEEEEEE
Confidence 3466788999999999999976543 689999862 211 024555542 258999
Q ss_pred ccCccCCCeEEEEEEEeCCe-----------e--EEEEEEEEEee----CCeEEe-cCCCcEEeeCCeEEEEEEEecC-C
Q psy574 156 SDVRLEDAGEYVCEAENAVG-----------K--ISASATLTVQM----APIVRE-RPSDLRLEVGRDAVFLCGIEGS-P 216 (977)
Q Consensus 156 ~~v~~~D~G~Y~C~a~n~~g-----------~--~~~~~~L~V~~----~p~~~~-~p~~~~v~~G~~v~L~C~~~g~-p 216 (977)
.+++.+|+|.|.|.+.+..+ . ....+.|.|.. +|.+.. .+.......|+.++|.|.+.+. |
T Consensus 85 ~~v~~~Dsg~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~~~~~v~L~C~~~g~~P 164 (512)
T 1zvo_C 85 RSMSAADTAMYYCARGNPPPYYDIGTGSDDGIDVWGQGTTVHVSSAPTKAPDVFPIISGCRHPKDNSPVVLACLITGYHP 164 (512)
T ss_pred CcCCHHHCEEEEEEEECCCCccccccccccccccccCceEEEecccCCcCCeEEeccCCcccccCCCeEEEEEEEEeeec
Confidence 99999999999999988642 1 23456788873 444432 2222212346899999999886 6
Q ss_pred CC-eEEEEEcCeeeeecCC----CccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEE----------
Q psy574 217 PP-STFWMLEGNRSLIYPG----DRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARA---------- 281 (977)
Q Consensus 217 ~~-~i~W~~~g~~~~~~~~----~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~---------- 281 (977)
.+ .|.|++++........ ...+.+.+. +.|.|.....+ .|.|+ |.|.|..+.....+
T Consensus 165 ~p~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~------s~L~i~~~~~~-~g~yt-C~v~n~~~~~~~~~~~~~~~~~~~ 236 (512)
T 1zvo_C 165 TSVTVTWYMGTQSQPQRTFPEIQRRDSYYMTS------SQLSTPLQQWR-QGEYK-CVVQHTASKSKKEIFRWPESPKAQ 236 (512)
T ss_pred CceEEEEEcCcccCceEecCceecCCCCEEEE------EEEEEcHHHcC-CceEE-EEEEeCCCCceEEEecCCCCCCcC
Confidence 65 8999997543211000 011222222 37889888777 99999 99999988765544
Q ss_pred -EEEEECCC-----------------------------------------------CCCCCe-EEeCCCceeecCCCcEE
Q psy574 282 -SLTVSGPD-----------------------------------------------PNPPPV-ILFGPANQTLPLRSEAR 312 (977)
Q Consensus 282 -~l~V~~~~-----------------------------------------------~~~pp~-i~~~p~~~~v~~g~~~~ 312 (977)
.+.+..++ ...+|. +..+|....+..|+.++
T Consensus 237 ~~v~l~~pp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~g~~~~ 316 (512)
T 1zvo_C 237 ASSVPTAQPQAEGSLAKATTAPATTRNTGRGGEEKKKEKEKEEQEERETKTPECPSHTQPLGVYLLTPAVQDLWLRDKAT 316 (512)
T ss_pred CEEEEeCCCchhccccccccCchhhccCcccccceeccCCcccccccCcccccCCCCCCCCEEEEECCChHHhccCCceE
Confidence 23333211 011233 45566666677899999
Q ss_pred EEEEEcc-Cc---eEEEEECCEEcCCC---CcEEEecCc------eEEEeccCCCCCeEEEEEEEcCCCceE
Q psy574 313 LRCQVRG-EG---SVQWWRGEREVGSG---PRVNVTGDG------SLVLTDVTKEDSGEYTCVVKSPHGSAS 371 (977)
Q Consensus 313 L~C~~~~-~p---~i~W~~~g~~l~~~---~~~~~~~~~------sl~I~~v~~~d~G~Y~C~a~n~~G~~~ 371 (977)
|.|.+.+ .| .|.|+++|..+... .......++ .|.|......|.|.|+|.|.|..+...
T Consensus 317 L~C~v~g~~P~~~~i~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~g~y~C~a~n~~~~~~ 388 (512)
T 1zvo_C 317 FTCFVVGSDLKDAHLTWEVAGKVPTGGVEEGLLERHSNGSQSQHSRLTLPRSLWNAGTSVTCTLNHPSLPPQ 388 (512)
T ss_pred EEEEEeceECCCeEEEEEECCEeccCceeccceecCCCCeEEEEEEEEEchHHhcCCCeEEEEEEeCCCCCC
Confidence 9999998 33 89999999986522 111212233 488888888899999999999887653
No 185
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}
Probab=99.84 E-value=6.4e-20 Score=192.65 Aligned_cols=180 Identities=29% Similarity=0.446 Sum_probs=138.6
Q ss_pred ccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCC-ce-EEEecCcEEEEcCCCCCCCeEEEEEEEecCceeee
Q psy574 12 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENS-KR-LRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRES 89 (977)
Q Consensus 12 p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~-~r-~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~s 89 (977)
+..+.+.+|++++|.|.+ .+.|.+.|.|+|+|..+..... .. .....+++|.|.+++.+|+|.|+|.+.|..+.. +
T Consensus 22 ~~~~~v~~G~~v~L~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~-~ 99 (241)
T 3grw_A 22 KKLLAVPAANTVRFRCPA-AGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSI-R 99 (241)
T ss_dssp CCEEEEETTSEEEEECCE-ECSSCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEE-E
T ss_pred CcceEEcCCCeEEEEEEe-cCCCCceeEEEECCcccCCCCcccceeeeccceEEEEEeCCcccCEEEEEEEeecCCce-E
Confidence 456899999999999999 7889999999999999854322 12 223345689999999999999999999987764 4
Q ss_pred EeEEEEEEc----CCeEE-eCCCceEEeCCCeEEEEEEecccCceEEEEEE----CCeeCCCCce--EE----------e
Q psy574 90 TDAVLRVLV----KPYII-RGPKDTTVSASSIIVFECSVGGDAVLTVHWKR----LGSAMPEDRM--SV----------L 148 (977)
Q Consensus 90 ~~~~l~V~~----~P~~~-~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k----~~~~l~~~~~--~~----------~ 148 (977)
..+.|.|.. +|.+. ..+....+.+|+.+.|.|.+.|.|.+.+.|++ ++..+..... .. .
T Consensus 100 ~~~~l~V~~~~~~~~~~~~~~~~~~~~~~g~~v~L~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 179 (241)
T 3grw_A 100 QTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVE 179 (241)
T ss_dssp EEEEEEEECCCCCCCEEEECTTCSEECCTTCCEEEEEEEECSSCCEEEEEEECCSSSCSSCTTTCCCEEEEEEEECSBSE
T ss_pred EEEEEEEeccCCCCceeecCCCccceecCCCEEEEEEEEecCCCCEEEEEEcccCCCcccCCCCceeeeeeeEeeeeecC
Confidence 557788875 23333 34677789999999999999999999999999 7777653211 11 1
Q ss_pred ccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEEeeCCeEEe
Q psy574 149 PSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRE 193 (977)
Q Consensus 149 ~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~~~p~~~~ 193 (977)
....|.|.++..+|+|.|+|.|.|..|..+..+.|.|..+|....
T Consensus 180 ~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~p~~~~ 224 (241)
T 3grw_A 180 ADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPRAAEE 224 (241)
T ss_dssp EEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEC--------
T ss_pred CceEEEECcCCcccCcEEEEEEecCcceEEEEEEEEecCCCCCCc
Confidence 245799999999999999999999999999999999998776543
No 186
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A
Probab=99.84 E-value=7.6e-20 Score=184.46 Aligned_cols=180 Identities=22% Similarity=0.397 Sum_probs=149.1
Q ss_pred CCeEEeCCCceEEeCCCeEEEEEEecccC-ceEEEEEE-CCeeCCC--CceEEe----ccceEEEccCccCCCeEEEEEE
Q psy574 99 KPYIIRGPKDTTVSASSIIVFECSVGGDA-VLTVHWKR-LGSAMPE--DRMSVL----PSRSLQLSDVRLEDAGEYVCEA 170 (977)
Q Consensus 99 ~P~~~~~p~~~~v~~G~~v~l~C~v~g~p-~~~i~W~k-~~~~l~~--~~~~~~----~~~~L~I~~v~~~D~G~Y~C~a 170 (977)
++.+...|.+..+.+|+++.|.|.+.+.+ .+.+.|++ ++..+.. .++.+. ....|.|.+++.+|+|.|+|.+
T Consensus 2 p~~v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 81 (191)
T 1epf_A 2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVV 81 (191)
T ss_dssp -CCEEEESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEE
T ss_pred ceEEEecCCCcEEcCCCCEEEEEECCCCCCCceEEEEeCCCccccCCCCeEEEEECCCCceEEEEccCCcccCEEEEEEE
Confidence 45667778889999999999999998876 88999999 7777653 444443 3478999999999999999999
Q ss_pred EeCC-eeEEEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCccccEEEEEccCCc
Q psy574 171 ENAV-GKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGM 249 (977)
Q Consensus 171 ~n~~-g~~~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~ 249 (977)
.|.. +..+..+.|.|..+|.+...+....+.+|+.++|.|.+.+.|.+.+.|++++..+... ...++.... ++
T Consensus 82 ~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~---~~~~~~~~~--~~- 155 (191)
T 1epf_A 82 TAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILK---KDVRFIVLS--NN- 155 (191)
T ss_dssp EETTTEEEEEEEEEEEECCSEEEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGG---CCTTEEECT--TS-
T ss_pred EcCCCcceEEEEEEEeecCceEecCCCcEeecCCCeEEEEEEECCCCCCEEEEEECCEEeecc---CCceEEEec--CC-
Confidence 9998 5678889999999999999999999999999999999999999999999999876432 223444332 34
Q ss_pred eEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEE
Q psy574 250 NLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVS 286 (977)
Q Consensus 250 s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~ 286 (977)
.|.|.+++.+|+|.|+ |.|.|..+.......+.|.
T Consensus 156 -~L~i~~~~~~d~G~Y~-C~a~n~~~~~~~~~~i~v~ 190 (191)
T 1epf_A 156 -YLQIRGIKKTDEGTYR-CEGRILARGEINFKDIQVI 190 (191)
T ss_dssp -CEEETTCCGGGCEEEE-EEEEEGGGTEEEEEEEEEE
T ss_pred -eEEECCCChhhCEEEE-EEEEEecceeEEEEEEEEe
Confidence 8999999999999999 9999998776666665553
No 187
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3
Probab=99.84 E-value=2e-20 Score=186.04 Aligned_cols=161 Identities=18% Similarity=0.203 Sum_probs=125.9
Q ss_pred cceEEeCCCcEEEEEEC-CCCCCCCeEEEEeCCEEee--------cCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEec
Q psy574 13 KSQRVAAGDTALLECGP-PRGHPEPTLVWKKNGHPID--------FENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNV 83 (977)
Q Consensus 13 ~~~~v~~G~~v~L~C~~-~~g~P~~~v~W~k~g~~l~--------~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~ 83 (977)
..+.+.+|++++|.|.. +.+.|.+.|.|+|++..|. ....+|+.+..+|+|.|.+++.+|+|.|+|.|.|.
T Consensus 4 ~~v~~~~G~~v~L~c~~~~~~~~~~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~~~~gsL~I~~v~~~D~G~Y~C~~~n~ 83 (176)
T 1hng_A 4 GTVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYST 83 (176)
T ss_dssp EEEEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTSCEEESSCCGGGCEEEEEEEEET
T ss_pred eEEEEEcCCcEEEcCCCCCcccccccEEEEeCCceeEEEcCCCeecCCCCeEEECCCCcEEEcccccccCEEEEEEEEeC
Confidence 35789999999999943 3336677999999997653 12356888888899999999999999999999999
Q ss_pred Ccee-eeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceEEeccceEEEccCccCC
Q psy574 84 AGTR-ESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLED 162 (977)
Q Consensus 84 ~g~~-~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~D 162 (977)
.|.. .+..+.|.|..++. .......+..+.|.|.+.|.|.+.|.|+|++..+..+ ..+.|.++..+|
T Consensus 84 ~g~~~~~~~~~l~V~~~~~-----~p~i~~~~~~v~L~C~~~g~p~p~i~W~~~g~~l~~~-------~~~~i~~~~~~d 151 (176)
T 1hng_A 84 NGTRILNKALDLRILEMVS-----KPMIYWECSNATLTCEVLEGTDVELKLYQGKEHLRSL-------RQKTMSYQWTNL 151 (176)
T ss_dssp TCCEEEEEEEEEEEECCCC-----CCEEEEETTTTEEEEECSSCSSCEEEEEETTEEEEEE-------SSSEEEEECSCC
T ss_pred CCCEEEEEEEEEEEeCCCC-----CCEEEecCCcEEEEEEecCCCCcEEEEEECCEECCCC-------CcEEEEEEEccC
Confidence 8875 45667888876421 1112233556999999999999999999999877532 225566888999
Q ss_pred CeEEEEEEEeCCeeEEEEEEEEE
Q psy574 163 AGEYVCEAENAVGKISASATLTV 185 (977)
Q Consensus 163 ~G~Y~C~a~n~~g~~~~~~~L~V 185 (977)
+|.|+|.|.|..|..++.+.|.+
T Consensus 152 ~G~Y~C~a~N~~g~~~~~~~l~~ 174 (176)
T 1hng_A 152 RAPFKCKAVNRVSQESEMEVVNC 174 (176)
T ss_dssp SSCEEEEEEETTEEEEEEECCCC
T ss_pred CeEEEEEEEecCCCceecccccC
Confidence 99999999999998877776654
No 188
>2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor; 2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A 1lwr_A
Probab=99.84 E-value=1.3e-19 Score=185.87 Aligned_cols=191 Identities=16% Similarity=0.148 Sum_probs=148.7
Q ss_pred CCCCCCCCCeEEeeCCCceEEEEEcCCCCCCcccceEEEEEeecCCCCCCCCCCCCcccEEEecee----cCcCeEEEEc
Q psy574 396 TYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATN----VPSPILTVTN 471 (977)
Q Consensus 396 ~~p~~P~~~~v~~~~~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~~----~~~~~~~i~~ 471 (977)
..|++|.++.+...+. ++.|+|.+|...++.++.+|.|+|+..... .|...... .....+++.+
T Consensus 7 ~~P~~P~~~~~~~~~~-s~~l~W~~p~~~~g~~i~~Y~v~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~i~~ 74 (209)
T 2vkw_A 7 DTPSSPSIDQVEPYSS-TAQVQFDEPEATGGVPILKYKAEWRAVGEE-----------VWHSKWYDAKEASMEGIVTIVG 74 (209)
T ss_dssp CCCCCCEEEEEEECSS-CEEEEEECCSCCCSSCCCEEEEEEEESSCC-----------CCEEEEEEHHHHHHHSEEEECC
T ss_pred CCCcCCcccEeeeccC-eEEEEEcCCCcCCCcceeEEEEEEeeCCCC-----------CceEeEeeccCCCccceEEeCC
Confidence 6789999999988877 699999999765566699999999876543 67665432 3457899999
Q ss_pred cCCCCeEEEEEEEEcCCCCCCCCCCCceEEeeccccccccccCCcceeecCCCCCCCcchHHHHhhcccccCCceEEEEE
Q psy574 472 LTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTE 551 (977)
Q Consensus 472 L~p~t~Y~~~V~a~n~~G~s~~S~~s~~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~g~~~~~~~~~l~~~~~~~~~~l~ 551 (977)
|.|++.|.|+|+|.|..|.|.+|..... ++... ..| .++.++.
T Consensus 75 L~p~t~Y~~~V~A~n~~G~~~~s~~~~~-~T~~~---~~P---------------------------------~~P~~~~ 117 (209)
T 2vkw_A 75 LKPETTYAVRLAALNGKGLGEISAASEF-KTQPV---REP---------------------------------SAPKLEG 117 (209)
T ss_dssp CCTTCEEEEEEEEEETTEECCCCCCEEE-ECCCS---CSC---------------------------------CCCEEEE
T ss_pred CCCCCeEEEEEEEEcCCcccCCcccccc-cccCC---CCC---------------------------------CCCcccc
Confidence 9999999999999999999988765443 22111 011 2235678
Q ss_pred eeEeCCCeEEEEEEec--CCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeecceeCCCC
Q psy574 552 VKPMTSTSVKLTWEIL--NTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPS 629 (977)
Q Consensus 552 ~~~~~~tsv~lsW~~p--~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~g~~s 629 (977)
+...+.++|.|+|++| .++.+.+|.|+|+. . ...|...... ....+++.|.+|+|++.|.|+|+|.|..|.|++|
T Consensus 118 ~~~~~~~sv~l~W~~p~~~~~~i~~Y~v~~~~-~-~~~~~~~~~~-~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~s~~S 194 (209)
T 2vkw_A 118 QMGEDGNSIKVNLIKQDDGGSPIRHYLVRYRA-L-SSEWKPEIRL-PSGSDHVMLKSLDWNAEYEVYVVAENQQGKSKAA 194 (209)
T ss_dssp EECTTSSCEEEEEECCCCTTSCCCEEEEEEEE-T-TSCCCCCEEE-CTTCCEEEECSCCTTCEEEEEEEEEETTEECCCE
T ss_pred cccccCCeEEEEEECcccCCCCCceEEEEEEC-C-CCCCceeeec-CCCccEEEecCCCCCCEEEEEEEEEeCCccCCcc
Confidence 8889999999999999 67899999999998 3 3455543322 3567899999999999999999999999999999
Q ss_pred CceEEeccC
Q psy574 630 NLRAVRTLE 638 (977)
Q Consensus 630 ~~~~~~T~~ 638 (977)
..+.+++..
T Consensus 195 ~~~~~~~~~ 203 (209)
T 2vkw_A 195 HFVFRTAAA 203 (209)
T ss_dssp EEEEECC--
T ss_pred hhhhhhhhh
Confidence 877766543
No 189
>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A*
Probab=99.83 E-value=3.3e-20 Score=213.38 Aligned_cols=230 Identities=16% Similarity=0.130 Sum_probs=163.3
Q ss_pred CCCCCeEEEEEEEcCCCceEEEEEEEEECCCCCCCcccCCCCCCCCCCCCCCCeEEeeCCCceEEEEEcCCCCCCcccce
Q psy574 352 TKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLG 431 (977)
Q Consensus 352 ~~~d~G~Y~C~a~n~~G~~~~s~~l~v~~~~~~~~~~~~~~~~~~~p~~P~~~~v~~~~~~sv~lsW~~p~~~~~~~i~~ 431 (977)
...+.|.|.|.+.|..+....... ......+|++|.++. ..++.+++.|+|.+|...++..+.+
T Consensus 303 ~s~~~Gs~~C~C~ng~~ra~~d~~---------------~~~ct~pPsaP~nl~-~~vs~tSv~LsW~pP~~~gG~~i~~ 366 (536)
T 3fl7_A 303 LPSPEGATSCECEEGFFRAPQDPA---------------SMPCTRPPSAPHYLT-AVGMGAKVELRWTPPQDSGGREDIV 366 (536)
T ss_dssp ECCCTTCSSCEECTTCBCCTTCCT---------------TSCCBCCCCCBSCEE-EECCTTSEEEEECCBSCCCSCSCCE
T ss_pred CCCCCCccEEEEeccccccCCCcc---------------ccccccCCCcccceE-EEecCCEEEEEEeCCcCCCCCceeE
Confidence 345789999999998886431110 011124789999995 5788999999999998866668999
Q ss_pred EEEEEeecCCCCCCCCCCCCcccEEEeceecCcCeEEEEccCCCCeEEEEEEEEcCCCCCCCCCCCceEEeecccccccc
Q psy574 432 YQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIF 511 (977)
Q Consensus 432 Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~G~s~~S~~s~~~~~~~~~p~~~p 511 (977)
|.|+|+........|..+.....|..........+++|.+|.|++.|.|+|+|.|..|.+.+++.+..+.... .+ .
T Consensus 367 Y~V~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~ts~tI~gL~P~T~Y~frV~A~N~~G~~sps~~s~~v~v~T-~~-~-- 442 (536)
T 3fl7_A 367 YSVTCEQCWPESGECGPCEASVRYSEPPHGLTRTSVTVSDLEPHMNYTFTVEARNGVSGLVTSRSFRTASVSI-NQ-T-- 442 (536)
T ss_dssp EEEEEEEECC-CCCEEECCTTCEESSCSSSBCSSEEEEECCCTTCEEEEEEEEECTTGGGCSCCCEEEEEEEC-CS-C--
T ss_pred EEEEEEeccCCCCcccccCCCceEEEeecCCccceeEeCCCCCCCEEEEEEEEEecCCCCCCCCccceeEEee-cc-c--
Confidence 9999997644332233333333454444456788999999999999999999999888754444444444421 11 1
Q ss_pred ccCCcceeecCCCCCCCcchHHHHhhcccccCCceEEEEEeeEeCCCeEEEEEEec--CCCccceEEEEEEecCCCCCce
Q psy574 512 SEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPMTSTSVKLTWEIL--NTDYIEGVYIYSRGLDPPASVA 589 (977)
Q Consensus 512 ~~~~~~~~~~~P~~~~~g~~~~~~~~~l~~~~~~~~~~l~~~~~~~tsv~lsW~~p--~~~~i~~Y~v~y~~~~~~~~~~ 589 (977)
+| ..+.+...++++|.|+|++| .++.|.+|+|+|+..+....+.
T Consensus 443 ----------~P------------------------s~~~~~~~s~tSV~LsW~pP~~~ng~I~~Y~V~y~~~~~~~~~~ 488 (536)
T 3fl7_A 443 ----------EP------------------------PKVRLEGRSTTSLSVSWSIPPPQQSRVWKYEVTYRKKGDSNSYN 488 (536)
T ss_dssp ----------CC------------------------CEEEEEECCC-CCEEEEECCTTTTTTCSEEEEEEEEC--CCCCE
T ss_pred ----------CC------------------------CCCceeeccCCeEEEEEECCcCCCCcccEEEEEEEECCCCceEE
Confidence 11 12344788899999999999 6788999999999887542222
Q ss_pred EEEEeecCccceEEECCCCCCcEEEEEEEEeecceeCCCCCceEEeccCC
Q psy574 590 MLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVRTLEC 639 (977)
Q Consensus 590 ~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~g~~s~~~~~~T~~~ 639 (977)
.. ....++++|.+|+|++.|.|+|+|.|..|.|++|..+.++|.++
T Consensus 489 ~v----~~~~ts~~l~gL~P~T~Y~frVrA~n~~G~Gp~S~~v~~~T~~~ 534 (536)
T 3fl7_A 489 VR----RTEGFSVTLDDLAPDTTYLVQVQALTQEGQGAGSKVHEFQTLSP 534 (536)
T ss_dssp EE----EESSSEEECCSCCSSCEEEEEEEEECC---CEECCCEEEECCC-
T ss_pred EE----cCCCCEEEECCCCCCCEEEEEEEEEcCCcccCCCCCEEEEeCCC
Confidence 22 24668999999999999999999999999999999999999753
No 190
>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}
Probab=99.83 E-value=3e-20 Score=197.05 Aligned_cols=199 Identities=16% Similarity=0.223 Sum_probs=126.5
Q ss_pred CCCCCCeEEEEEEEecCceeeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEecccC-----ceEEEEEECC--eeC
Q psy574 68 SRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDA-----VLTVHWKRLG--SAM 140 (977)
Q Consensus 68 v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p-----~~~i~W~k~~--~~l 140 (977)
++.+|+|.|+|.|. |... ..+.+.+..++.+...|..+.+.+|++++|.|.+.+.| .+.|.|+|++ ..+
T Consensus 11 v~~~dsg~Y~C~a~---g~~~-~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~ 86 (254)
T 2c1o_A 11 VRPGTSVKLSCKAS---GYSF-TNYWMNWLRELVMTQSPLTLSVTIGQPASISCKSSQSLLYSNGKTYLNWLLQRPGQSP 86 (254)
T ss_dssp -------------------------------CCCEEEECSEEEECTTSCEEEEEEESSCCBCSSSCBCEEEEEECTTSCC
T ss_pred ecCCccEEEEEcCc---hhhh-hhhhhheeeceeEEeCCceEEecCCCcEEEEeeccCcccccCCCCceEEEEeCCCCCc
Confidence 78999999999998 3322 23445555577888888899999999999999998887 4899999853 211
Q ss_pred -------------CCCceEEec---cceEEEccCccCCCeEEEEEEEeCCeeE-EEEEEEEEee---CCeEEecCCCcEE
Q psy574 141 -------------PEDRMSVLP---SRSLQLSDVRLEDAGEYVCEAENAVGKI-SASATLTVQM---APIVRERPSDLRL 200 (977)
Q Consensus 141 -------------~~~~~~~~~---~~~L~I~~v~~~D~G~Y~C~a~n~~g~~-~~~~~L~V~~---~p~~~~~p~~~~v 200 (977)
..+++.+.. ..+|.|.+++.+|+|.|+|.|.|..+.. ...+.|.|.. +|.+...+.....
T Consensus 87 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~ 166 (254)
T 2c1o_A 87 KRLIYLVSKLDSGDPDRFTGSGSGTDFTLKISRVEAEDLGIYYCVQGSHFPPTFGAGTKLELKRADAAPTVSIFPPSSEQ 166 (254)
T ss_dssp EEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECSSSSCEEBCCEEEEECCCCBCCEEEEECCCHHH
T ss_pred eEEEEeccccCCCccceEEEecCCCEEEEEECcCCcccCEEEEEEEEcCcceEecCCEEEEECCCCCCCeeEeecCChhh
Confidence 124555542 2389999999999999999999876532 2334677763 6777765555544
Q ss_pred eeCCeEEEEEEEecC-CC-CeEEEEEcCeeeeec-C------CCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEE
Q psy574 201 EVGRDAVFLCGIEGS-PP-PSTFWMLEGNRSLIY-P------GDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGV 271 (977)
Q Consensus 201 ~~G~~v~L~C~~~g~-p~-~~i~W~~~g~~~~~~-~------~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~ 271 (977)
..|+.++|.|.+.+. |. +.+.|+|+|..+... . ....+.+.. .+.|.|.++..+|+|.|+ |.|.
T Consensus 167 ~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~------~~~L~i~~~~~~d~G~Y~-C~a~ 239 (254)
T 2c1o_A 167 LTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSM------SSTLTLTKDEYERHNSYT-CEAT 239 (254)
T ss_dssp HHTTEEEEEEEEEEEBSSCCEEEEEESSSEECTTEEEEECCCCTTTCCEEE------EEEEEEEHHHHHTCCEEE-EEEE
T ss_pred ccCCcEEEEEEEecccCCCcEEEEEECCCcccCcceeccccccCCCCcEEE------EEEEEeccccccCCCeEE-EEEE
Confidence 578899999999884 44 469999999876321 0 001122222 238999999999999999 9999
Q ss_pred cCCCce
Q psy574 272 NAAGSD 277 (977)
Q Consensus 272 n~~g~~ 277 (977)
|.....
T Consensus 240 n~~~~~ 245 (254)
T 2c1o_A 240 HKTSTS 245 (254)
T ss_dssp CTTCSS
T ss_pred cCCCCC
Confidence 987654
No 191
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G
Probab=99.83 E-value=4.3e-21 Score=196.59 Aligned_cols=178 Identities=22% Similarity=0.396 Sum_probs=144.5
Q ss_pred ccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEe----------ecCCCceEEEecCcEEEEcCCCCCCCeE
Q psy574 6 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPI----------DFENSKRLRLVDGTNLAIQDSRKTDDGR 75 (977)
Q Consensus 6 ~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l----------~~~~~~r~~~~~~g~L~I~~v~~~D~G~ 75 (977)
..|...|.++.+.+|++++|.|.+ .+.|.+.|.|+|++..+ ......|+.+.. +.|.|.+++.+|+|.
T Consensus 5 ~~i~~~~~~~~v~~G~~v~L~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~L~i~~~~~~d~G~ 82 (209)
T 1nbq_A 5 VTVHSSEPEVRIPENNPVKLSCAY-SGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLP-TGITFKSVTREDTGT 82 (209)
T ss_dssp CEEECSCSBCCEETTCCCEEECEE-ESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEET-TEEECSCCCTTSCSE
T ss_pred EEEEcCCCceEEEcCCCEEEEEEE-eCCCCcEEEEEEcCCceeEEEEecCccCccccCceEeec-cEEEEeeCCHHHCcE
Confidence 456778888999999999999999 67899999999987653 123345666664 889999999999999
Q ss_pred EEEEEEecCce-eeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEe-cccCceEEEEEECCeeCCCCc---------
Q psy574 76 YQCVVKNVAGT-RESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSV-GGDAVLTVHWKRLGSAMPEDR--------- 144 (977)
Q Consensus 76 Y~C~a~n~~g~-~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v-~g~p~~~i~W~k~~~~l~~~~--------- 144 (977)
|+|.+.+..|. ..+..+.|.|..+|.+...+....+.+|+.+.|.|.+ .|.|.+.+.|+|++..+....
T Consensus 83 Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~ 162 (209)
T 1nbq_A 83 YTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNS 162 (209)
T ss_dssp EEEEEEETTSSCEECCEEECCEEBCCCCCCCCCBSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTC
T ss_pred EEEEEecCCCCccceEEEEEEEecCCcCCCcccccceecCCEEEEEEeCCCCCCCceeEEEECCeeCCCccccceeeecc
Confidence 99999998652 2356678889999988877777789999999999997 899999999999998876422
Q ss_pred -eEEe-ccceEEEccCccCCCeEEEEEEEeCCeeE--EEEEEEEE
Q psy574 145 -MSVL-PSRSLQLSDVRLEDAGEYVCEAENAVGKI--SASATLTV 185 (977)
Q Consensus 145 -~~~~-~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~--~~~~~L~V 185 (977)
+.+. ..+.|.|.++..+|+|.|+|.|.|..|.. +..+.|.|
T Consensus 163 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~l~V 207 (209)
T 1nbq_A 163 SYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEA 207 (209)
T ss_dssp CCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSCCEECCCBCCEE
T ss_pred ceEEcCCcceEEEEeccccCCeEEEEEEeCCcCcccccccEEEEE
Confidence 1221 45789999999999999999999999876 33444444
No 192
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}
Probab=99.83 E-value=2.2e-20 Score=197.38 Aligned_cols=177 Identities=23% Similarity=0.321 Sum_probs=134.5
Q ss_pred ceecccceEEeCCCcEEEEEECCCC---CCCCeEEEEeCCEEee----------------------------cCCCceEE
Q psy574 8 FRVQPKSQRVAAGDTALLECGPPRG---HPEPTLVWKKNGHPID----------------------------FENSKRLR 56 (977)
Q Consensus 8 ~~~~p~~~~v~~G~~v~L~C~~~~g---~P~~~v~W~k~g~~l~----------------------------~~~~~r~~ 56 (977)
+...+..+.+.+|++++|.|.+ .+ .|.+.|.|+|++.... ....+|+.
T Consensus 5 v~~~~~~v~v~~G~~v~L~C~~-~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 83 (250)
T 2fbo_J 5 VRTTHTEVEVHAGGTVELPCSY-QLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRAS 83 (250)
T ss_dssp EECSCSEEEECTTSCEEECCEE-EECSCCSCCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEE
T ss_pred EEcCCCceEEecCCeEEEEEEe-EcCCCCCceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEE
Confidence 3455668999999999999988 44 7889999999874320 12345565
Q ss_pred Eec--CcEEEEcCCCCCCCeEEEEEEEecCcee----eeEeEEEEEEcC---CeEE-eCCCceEEeCCCeEEEEEEeccc
Q psy574 57 LVD--GTNLAIQDSRKTDDGRYQCVVKNVAGTR----ESTDAVLRVLVK---PYII-RGPKDTTVSASSIIVFECSVGGD 126 (977)
Q Consensus 57 ~~~--~g~L~I~~v~~~D~G~Y~C~a~n~~g~~----~s~~~~l~V~~~---P~~~-~~p~~~~v~~G~~v~l~C~v~g~ 126 (977)
+.. +.+|.|.+++.+|+|.|+|.+.+..+.. .+..+.|.|..+ |.+. ..+....+.+|+++.|.|.+.|.
T Consensus 84 ~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~v~~g~~v~L~C~~~g~ 163 (250)
T 2fbo_J 84 VANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDC 163 (250)
T ss_dssp CSCTTSCCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSCCSCCEECCCSEEECCTTCCEEECCCEESC
T ss_pred eccCCcceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccCCCCeEEEecCceEEecCCCcEEEEEEecCC
Confidence 554 3579999999999999999999877643 245678888864 3333 34556777889999999999999
Q ss_pred CceEEEEEECCeeCCCC-------------------------ceEEeccceEEEccCccCCCeEEEEEEEe---CCeeEE
Q psy574 127 AVLTVHWKRLGSAMPED-------------------------RMSVLPSRSLQLSDVRLEDAGEYVCEAEN---AVGKIS 178 (977)
Q Consensus 127 p~~~i~W~k~~~~l~~~-------------------------~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n---~~g~~~ 178 (977)
|.|.|.|+|++..+... +........|.|.+++.+|+|.|+|.|.| ..|...
T Consensus 164 p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~g~~~ 243 (250)
T 2fbo_J 164 ANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADR 243 (250)
T ss_dssp TTCEEEEEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEETTTEEEECSCCGGGCEEEEEEEESSSSGGGEEE
T ss_pred CCCeeEEEeCCCcccccccCcceeEeccCCCCccccCceEecccccCCccEEEEecCCcccCEEEEEEecCCccccCccc
Confidence 99999999998877541 12222447899999999999999999999 445566
Q ss_pred EEEEEEE
Q psy574 179 ASATLTV 185 (977)
Q Consensus 179 ~~~~L~V 185 (977)
..+.|.|
T Consensus 244 ~~~~l~V 250 (250)
T 2fbo_J 244 SSTILKV 250 (250)
T ss_dssp EEEEEEC
T ss_pred eeEEEeC
Confidence 6666654
No 193
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A
Probab=99.83 E-value=7.2e-20 Score=180.90 Aligned_cols=163 Identities=18% Similarity=0.333 Sum_probs=133.5
Q ss_pred cccceecccceEEeCCCcEEEEEECCCCCC-CCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEec
Q psy574 5 REEFRVQPKSQRVAAGDTALLECGPPRGHP-EPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNV 83 (977)
Q Consensus 5 ~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P-~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~ 83 (977)
++.+.+.|..+.+.+|++++|.|.+ .+.| .+.+.|+|||..+... .+.+.|.+++.+|+|.|+|.+.+.
T Consensus 4 ~p~i~~~p~~~~v~~G~~v~l~C~~-~~~p~~~~~~W~~~g~~~~~~---------~~~~~~~~~~~~d~G~Y~C~~~~~ 73 (170)
T 3ry4_A 4 KAVLKLEPPWINVLQEDSVTLTCQG-ARSPESDSIQWFHNGNLIPTH---------TQPSYRFKANNNDSGEYTCQTGQT 73 (170)
T ss_dssp BCEEEEESCCSEEETTCEEEEEEES-CCCSSSSCEEEEETTEECTTC---------CSSEEEEECCGGGCEEEEEEETTS
T ss_pred CCEEEeCCCCeEEECCCcEEEEEEe-cCCCCcceEEEEECCeEcccC---------ccceEEEecccccCeEEEEEEeCC
Confidence 5778889988999999999999999 5555 6799999999999432 345778899999999999999864
Q ss_pred CceeeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEe-cccCceEEEEEECCeeCCCCceEEeccceEEEccCccCC
Q psy574 84 AGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSV-GGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLED 162 (977)
Q Consensus 84 ~g~~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v-~g~p~~~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~D 162 (977)
. .+..+.|.|..+|.+...+ ...+.+|+++.|.|.+ .+.|.+.+.|+|++..+.. ...+..|.|.+++.+|
T Consensus 74 ~---~s~~~~l~v~~~~~~~~~~-~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~----~~~~~~L~i~~v~~~d 145 (170)
T 3ry4_A 74 S---LSDPVHLTVLFEWLVLQTP-HLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKF----SHLDPTFSIPQANHSH 145 (170)
T ss_dssp B---CCCCEEEEEECCSEEEECS-CSEECTTCCEEEEEEEGGGCCEEEEEEEETTEEEEE----ESSCCEEEESSCCGGG
T ss_pred C---ceEeEEEEEECCceEecCC-CceeecCCeEEEEEECCCCCCCceEEEEECCeEccc----cCCCCeEEEEeccccC
Confidence 3 3456788998877666555 5678899999999999 5667799999999987642 1246789999999999
Q ss_pred CeEEEEEEEeCCee-EEEEEEEEE
Q psy574 163 AGEYVCEAENAVGK-ISASATLTV 185 (977)
Q Consensus 163 ~G~Y~C~a~n~~g~-~~~~~~L~V 185 (977)
+|.|+|.|.|..|. .+..+.|.|
T Consensus 146 ~G~Y~C~a~n~~g~~~s~~~~l~V 169 (170)
T 3ry4_A 146 SGDYHCTGNIGYTLFSSKPVTITV 169 (170)
T ss_dssp CEEEEEEEEETTEEEECCCEEEEE
T ss_pred CEEEEEEEEeCcCccccccEEEEE
Confidence 99999999999986 455666665
No 194
>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A
Probab=99.83 E-value=5.5e-19 Score=192.61 Aligned_cols=257 Identities=15% Similarity=0.206 Sum_probs=182.2
Q ss_pred EecCCCcEEeeCCeEEEEEEEec-------CCCCeEEEEEcCeeeeecCCCccccEEEEEccCCceEEEEeecccCCCCe
Q psy574 192 RERPSDLRLEVGRDAVFLCGIEG-------SPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPL 264 (977)
Q Consensus 192 ~~~p~~~~v~~G~~v~L~C~~~g-------~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~ 264 (977)
.+.|.+..+..|++++|.|.+.+ .|.+.|.|+++|..+. ..++.+... ..+.|.|.+++..| |.
T Consensus 8 ~i~P~~~~v~~G~~v~l~C~~~~~~~~~~~~p~p~i~W~~~g~~i~------~~~~~~~~~--~~~~L~i~~~~~~~-g~ 78 (303)
T 1i1r_A 8 YISPESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIP------KEQYTIINR--TASSVTFTDIASLN-IQ 78 (303)
T ss_dssp EEESSSCEEETTCCEEEEEEECHHHHHHHTCCGGGEEEEETTEECC------GGGCEEEET--TEEEEEECSCCCSE-EE
T ss_pred eEccCCceEeCCCCEEEEEEECCccccccCCChhheEEEECCEECC------hhheeeeCC--cEEEEEEcCcCCCc-eE
Confidence 35678889999999999999985 4788999999998762 234554432 34589999999885 99
Q ss_pred EEEEEEEcCCCcee---EEEEEEEECCCCCCCCeEEeCCCceeecCCCcEEEEEEEcc--CceEEEEECCEEcC-CCCcE
Q psy574 265 IILCLGVNAAGSDL---ARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG--EGSVQWWRGEREVG-SGPRV 338 (977)
Q Consensus 265 Y~~C~a~n~~g~~~---~~~~l~V~~~~~~~pp~i~~~p~~~~v~~g~~~~L~C~~~~--~p~i~W~~~g~~l~-~~~~~ 338 (977)
|+ |.|.+. |... ..+.|.+..+ | +....|.|.... ...+.|......-. ....+
T Consensus 79 Y~-C~a~~~-g~~~~~~~~~~l~v~~~-----P-------------~~P~~l~~~~~~~~~v~l~W~~~~~~~~~~~Y~v 138 (303)
T 1i1r_A 79 LT-CNILTF-GQLEQNVYGITIISGLP-----P-------------EKPKNLSCIVNEGKKMRCEWDGGRETHLETNFTL 138 (303)
T ss_dssp EE-EEEEET-TTEEEEEEEEEEEEECC-----C-------------CCCEEEEEEEETTSCCEEEEECCSCCSSCCEEEE
T ss_pred EE-EecccC-CCcceEEEEEEEeccCC-----C-------------CCCeeeEEEECCCCcEEEEccCCCCCCCCcCEEE
Confidence 99 999874 4332 2344555442 1 223356666655 55667764322110 01111
Q ss_pred EEe--------------cCceEEEecc-CCCCCeEEEEEEEcCCCceEEEEEEEEECCCCCCCcccCCCCCCCCCCCCCC
Q psy574 339 NVT--------------GDGSLVLTDV-TKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTK 403 (977)
Q Consensus 339 ~~~--------------~~~sl~I~~v-~~~d~G~Y~C~a~n~~G~~~~s~~l~v~~~~~~~~~~~~~~~~~~~p~~P~~ 403 (977)
... ...++.|.++ .+...+.|+|.|.|..|.... ..+.+.. .....|.||.+
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~i~~L~~p~t~Y~f~V~A~N~~G~~~s-~~~~~~~------------~~~~~p~pP~~ 205 (303)
T 1i1r_A 139 KSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTS-DHINFDP------------VYKVKPNPPHN 205 (303)
T ss_dssp EEEETTEECCCEECCSSCTTEEECSSCCCTTSCEEEEEEEEETTEEEEC-CCEEECG------------GGGEECCCCEE
T ss_pred EEEecCCCCccCCCcCCCceEEEECCcCcccccEEEEEEEEcCCCCccc-CCEEECH------------HHeEecCCCcc
Confidence 110 1235888898 888999999999999997642 1122211 11146889998
Q ss_pred CeEEee--CCCceEEEEEcCCCCCCcccceEEEEEeecCCCCCCCCCCCCcccEEEece---ecCcCeEEEEccCCCCeE
Q psy574 404 PTLVNQ--TANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVAT---NVPSPILTVTNLTVGLTY 478 (977)
Q Consensus 404 ~~v~~~--~~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~---~~~~~~~~i~~L~p~t~Y 478 (977)
+.+... +.+++.|+|.+|.. .++.+.+|.|+|+..... .|..+.. .....++.|.+|.|++.|
T Consensus 206 ~~v~~~~~~~~sv~l~W~~p~~-~~~~i~~Y~v~y~~~~~~-----------~w~~~~~~~~~~~~~~~~l~~L~p~t~Y 273 (303)
T 1i1r_A 206 LSVINSEELSSILKLTWTNPSI-KSVIILKYNIQYRTKDAS-----------TWSQIPPEDTASTRSSFTVQDLKPFTEY 273 (303)
T ss_dssp EEEECCSSSSSCEEEEEECCGG-GGTSCEEEEEEEEETTCS-----------SCEECCGGGGCSCCSEEEECSCCTTCEE
T ss_pred eEEEEecCCCCEEEEEECCCCC-CCcccEEEEEEEEeCCCC-----------CceEEccccCCCceeEEEeCCCCCCCEE
Confidence 887654 66899999999887 456899999999987533 7877643 445678999999999999
Q ss_pred EEEEEEEcCCCCCCCCCCCceEEe
Q psy574 479 TFLVRALNSHGLSAPSPLSDEIVL 502 (977)
Q Consensus 479 ~~~V~a~n~~G~s~~S~~s~~~~~ 502 (977)
.|+|+|.|..|.|.+|.++..+..
T Consensus 274 ~~rV~A~n~~G~G~~S~wS~~~~~ 297 (303)
T 1i1r_A 274 VFRIRCMKEDGKGYWSDWSEEASG 297 (303)
T ss_dssp EEEEEEEETTSCSCCCCCCCCEEE
T ss_pred EEEEEeccCCCCCCcCCCCCccce
Confidence 999999999999999999987776
No 195
>1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular matrix, adhesion, fusion protein, structural protein; 2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1
Probab=99.83 E-value=3.2e-19 Score=179.19 Aligned_cols=170 Identities=18% Similarity=0.213 Sum_probs=135.9
Q ss_pred CceEEEEEeeEeCCCeEEEEEEecCCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeecc
Q psy574 544 GSLIELTEVKPMTSTSVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGS 623 (977)
Q Consensus 544 ~~~~~~l~~~~~~~tsv~lsW~~p~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~ 623 (977)
+.+|.++++..++.++|.|+|++|.+ .+.+|.|+|+..+ ..+.... ......++.|.+|+|++.|.|+|+|.|..
T Consensus 7 p~~P~~l~~~~~~~~sv~l~W~~p~~-~i~~Y~v~~~~~~--~~~~~~~--~~~~~~~~~i~~L~p~t~Y~~~V~a~~~~ 81 (186)
T 1qr4_A 7 LDNPKDLEVSDPTETTLSLRWRRPVA-KFDRYRLTYVSPS--GKKNEME--IPVDSTSFILRGLDAGTEYTISLVAEKGR 81 (186)
T ss_dssp -CCCEEEEEESCCSSEEEEEEECCSS-CCSEEEEEEECTT--CCEEEEE--ECTTCSEEEEESCCSSCEEEEEEEEESSS
T ss_pred CcCCCceEEEecCCCEEEEEEeCCCC-CccEEEEEEEeCC--CCeeEEE--CCCCCCEEEECCCCCCCEEEEEEEEEcCC
Confidence 33458899999999999999999843 7899999999543 3333333 33567899999999999999999999976
Q ss_pred eeCCCCCceEEeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCcceEEEEecCCcCeEEe
Q psy574 624 VDGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLL 703 (977)
Q Consensus 624 g~g~~s~~~~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~l 703 (977)
+.+.+ ..+.+.|. | .+|.++++...+.++|.|+|++|. |.|.+|.|.|+..+........+.+..++++|
T Consensus 82 ~~s~~-~~~~~~t~---p-~~P~~l~~~~~~~~sv~l~W~~p~-----~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i 151 (186)
T 1qr4_A 82 HKSKP-TTIKGSTV---V-GSPKGISFSDITENSATVSWTPPR-----SRVDSYRVSYVPITGGTPNVVTVDGSKTRTKL 151 (186)
T ss_dssp CBCCC-EEEEEECC---C-CCCSCEEEESCCSSCEEEEECCCS-----SCCSEEEEEEEETTCCCCEEEEEETTCCEEEE
T ss_pred ccCCC-EEEEEECC---C-CCCCccEEEEeCCCEEEEEEECCC-----CcccEEEEEEEeCCCCCceEEEcCCCcCEEEE
Confidence 65543 33555554 3 367899998888999999999882 67999999998865445556677788899999
Q ss_pred cCCCCCceEEEEEEEEcCCCcCCCC
Q psy574 704 TNLSAGIRYSVSLAATNRAGTGPYS 728 (977)
Q Consensus 704 ~~L~p~t~Y~~~V~A~~~~G~g~~S 728 (977)
.+|+|++.|.|+|+|.+..|.|.+.
T Consensus 152 ~~L~p~t~Y~~~V~A~~~~g~s~p~ 176 (186)
T 1qr4_A 152 VKLVPGVDYNVNIISVKGFEESEPI 176 (186)
T ss_dssp CSCCSSCEEEEEEEEEETTEECCCE
T ss_pred cCCCCCCEEEEEEEEEcCCCcCcCE
Confidence 9999999999999999988877643
No 196
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*
Probab=99.83 E-value=7.3e-20 Score=195.65 Aligned_cols=197 Identities=22% Similarity=0.297 Sum_probs=130.5
Q ss_pred cccceecccceEEeCCCcEEEEEECCC---CCCCCeEEEEeCCEEee----------------cCCCceEEEec-----C
Q psy574 5 REEFRVQPKSQRVAAGDTALLECGPPR---GHPEPTLVWKKNGHPID----------------FENSKRLRLVD-----G 60 (977)
Q Consensus 5 ~~~~~~~p~~~~v~~G~~v~L~C~~~~---g~P~~~v~W~k~g~~l~----------------~~~~~r~~~~~-----~ 60 (977)
.+.+.+.|..+.+.+|++++|.|.+ . +.|.+.|.|+|++.... .....|+.+.. +
T Consensus 5 ~~~v~~~~~~~~v~~G~~v~L~C~~-~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 83 (268)
T 3mj6_A 5 LPGLTVSSPQLRVHVGESVLMGCVV-QRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHND 83 (268)
T ss_dssp -------CCEEEEETTCCEEECCBC-CCSSCCCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSCTTTTB
T ss_pred ccccccCCCceEEecCCcEEEEEEe-ecCCCCceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeecCCCCE
Confidence 3567788889999999999999998 4 67778999999653210 11125666532 3
Q ss_pred cEEEEcCCCCCCCeEEEEEEEecCcee-eeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEe---cccCceEEEEEEC
Q psy574 61 TNLAIQDSRKTDDGRYQCVVKNVAGTR-ESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSV---GGDAVLTVHWKRL 136 (977)
Q Consensus 61 g~L~I~~v~~~D~G~Y~C~a~n~~g~~-~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v---~g~p~~~i~W~k~ 136 (977)
++|.|.+++.+|+|.|+|.+.+..+.. .+..+.|.|. ...|....+.+|++++|.|.+ .+.|.+.+.|+|+
T Consensus 84 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~-----~~~p~~~~v~~G~~v~L~C~~~~~~~~p~~~v~W~~~ 158 (268)
T 3mj6_A 84 GSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVL-----PEEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFS 158 (268)
T ss_dssp CCEEECSCCGGGCEEEEEEEEETTCCCEEEEEEEEEEE-----CCCCSEEEEETTCCEEECCBCEESSSSCCCEEEEEEE
T ss_pred EEEEECCCCHhHCEEEEEEEEecCCcceEEEEEEEEEe-----ccCCCccccccCCcEEEEEEecCCCCCCccceEEEec
Confidence 689999999999999999999875443 3444556654 235667889999999999999 6779999999995
Q ss_pred CeeCCC-----------------------CceEE-----eccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEE-ee
Q psy574 137 GSAMPE-----------------------DRMSV-----LPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTV-QM 187 (977)
Q Consensus 137 ~~~l~~-----------------------~~~~~-----~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V-~~ 187 (977)
+..... .+..+ ..+..|.|.+++.+|+|.|+|.|.|..|.....+.|.| ..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~ 238 (268)
T 3mj6_A 159 SGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQD 238 (268)
T ss_dssp CTTCSSCEEEEEEETTSSSCEEECSSTTTTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred CCCCCcceeEEEecCCCCccccccccccccceEeeccCCCCeEEEEECcCChhhCeEEEEEEEcCCceEEEEEEEEEEcC
Confidence 332111 12222 23578999999999999999999999999999999999 46
Q ss_pred CCeEEecCCCcEEeeCCeEE
Q psy574 188 APIVRERPSDLRLEVGRDAV 207 (977)
Q Consensus 188 ~p~~~~~p~~~~v~~G~~v~ 207 (977)
+|.+...|....+.+|+.+.
T Consensus 239 ~p~~~~~p~~~~~~~~q~~~ 258 (268)
T 3mj6_A 239 EFQRTISPTPPTDKGQQGIL 258 (268)
T ss_dssp --------------------
T ss_pred CCeeeeCCCCCCCCcceecc
Confidence 77787888888777777654
No 197
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Probab=99.83 E-value=1.1e-19 Score=182.31 Aligned_cols=161 Identities=17% Similarity=0.249 Sum_probs=130.7
Q ss_pred ceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEE--ee----------cCCCceEEEec----Cc--EEEEcCCCCCCCeE
Q psy574 14 SQRVAAGDTALLECGPPRGHPEPTLVWKKNGHP--ID----------FENSKRLRLVD----GT--NLAIQDSRKTDDGR 75 (977)
Q Consensus 14 ~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~--l~----------~~~~~r~~~~~----~g--~L~I~~v~~~D~G~ 75 (977)
.+.+.+|++++|.|.+ .+.|.+.|.|+|++.. +. .....|+.+.. ++ +|.|.+++.+|+|.
T Consensus 4 ~v~~~~G~~v~L~C~~-~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~D~G~ 82 (184)
T 2ny1_B 4 VVLGKKGDTVELTCTA-SQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDT 82 (184)
T ss_dssp EEEEETTSCEEECCBC-SSSSCCCEEEEETTCCEEEEEETTEEEECSCTTGGGEECCGGGGGGTBCCEEECSCCGGGCEE
T ss_pred cEEEeCCCCEEEEEEE-cCCCceEEEEEeCCccceEEecCceEecCChhhCCccccccccccCCeEEEEEecCCHHHCEE
Confidence 5789999999999998 6889999999999863 21 11234555542 23 49999999999999
Q ss_pred EEEEEEecCceeeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceEEeccceEEE
Q psy574 76 YQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQL 155 (977)
Q Consensus 76 Y~C~a~n~~g~~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~~~~~L~I 155 (977)
|+|.+.|..+ .+.|.|.. +. .+....+.+|++++|.|.+.+.|.+.+.|++++..+ ......|.|
T Consensus 83 Y~C~~~~~~~-----~~~l~V~~---~~-~~~~~~v~~g~~~~l~C~~~~~p~~~v~W~~~~~~~------~~~~~~L~i 147 (184)
T 2ny1_B 83 YICEVEDQKE-----EVQLLVFG---LT-ANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKN------IQGGKTLSV 147 (184)
T ss_dssp EEEEETTEEE-----EEEEEEEE---EE-ESSCSEEETTCCEEEEEECCTTCCCEEEEECTTSCE------EEESSEEEE
T ss_pred EEEEEEcCCC-----cEEEEEEE---ec-CCCCceeecCCCEEEEEEcCCCCCCEEEEEeCCCcc------ccCceEEEE
Confidence 9999987533 45677763 22 345568899999999999988999999999997655 236688999
Q ss_pred ccCccCCCeEEEEEEEeCCeeEEEEEEEEEeeCCe
Q psy574 156 SDVRLEDAGEYVCEAENAVGKISASATLTVQMAPI 190 (977)
Q Consensus 156 ~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~~~p~ 190 (977)
.+++.+|+|.|+|.|.|..+..+..+.|.|...|.
T Consensus 148 ~~v~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~~p~ 182 (184)
T 2ny1_B 148 SQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQK 182 (184)
T ss_dssp SSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCC
T ss_pred ecCCcCCCeEEEEEEEECCceEEEEEEEEEEecCC
Confidence 99999999999999999999999999999987664
No 198
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4
Probab=99.83 E-value=9.3e-20 Score=182.30 Aligned_cols=172 Identities=23% Similarity=0.359 Sum_probs=140.7
Q ss_pred CCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCc-eEEec-----cceEEEccCccCCCeEEEEEEEe
Q psy574 99 KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDR-MSVLP-----SRSLQLSDVRLEDAGEYVCEAEN 172 (977)
Q Consensus 99 ~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~-~~~~~-----~~~L~I~~v~~~D~G~Y~C~a~n 172 (977)
+|.|...|.+..+.+|+++.|.|.+.+.|.+.+.|+|++..+.... ..+.. ...|.|.+++.+|+|.|+|.+.|
T Consensus 2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 81 (182)
T 1rhf_A 2 GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVED 81 (182)
T ss_dssp -----CCCEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESS
T ss_pred CCEEEeCCcceEEeCCCcEEEEEEEeCCCCCeEEEEECCeecCCCCceEEEecCCCceEEEEEeecCcccCeEEEEEEEc
Confidence 4677888889999999999999999999999999999999887643 22221 36899999999999999999999
Q ss_pred CCee-EEEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEEecCCCC-eEEEEEcCeeeeecCCCccccEEEEEccCCce
Q psy574 173 AVGK-ISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPP-STFWMLEGNRSLIYPGDRVDNIQAEITSDGMN 250 (977)
Q Consensus 173 ~~g~-~~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~-~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~s 250 (977)
..+. .+..+.|.|..+|.+...+....+.+|+.++|.|.+.+.|.+ .+.|++++..+... . . ...
T Consensus 82 ~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~----~-~--------~~~ 148 (182)
T 1rhf_A 82 GGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGP----A-P--------SPS 148 (182)
T ss_dssp CTTCEECCCEEEEEECSCEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCS----E-E--------SSE
T ss_pred CCCcEEEEEEEEEEecCCeEEecCcceEecCCCEEEEEeEecCCCCCCEEEEEcCCeECCCC----C-C--------Cce
Confidence 8765 557889999999999999999999999999999999999999 99999999876311 0 0 234
Q ss_pred EEEEeecccCCCCeEEEEEEEcCCCcee-EEEEEEEE
Q psy574 251 LLKIQNVSRTAAPLIILCLGVNAAGSDL-ARASLTVS 286 (977)
Q Consensus 251 ~L~I~~v~~~d~G~Y~~C~a~n~~g~~~-~~~~l~V~ 286 (977)
.|.|.++ +|+|.|+ |.|.|..|... ..+.|.|+
T Consensus 149 ~L~i~~~--~d~G~Y~-C~a~N~~g~~~s~~~~l~Vk 182 (182)
T 1rhf_A 149 VLNVTGV--TQSTMFS-CEAHNLKGLASSRTATVHLQ 182 (182)
T ss_dssp EEEECCC--SSCEEEE-EEEEETTEEEECCCEEEEEC
T ss_pred EEEEecc--ccCeEEE-EEEECCCCCcccceEEEEeC
Confidence 8999988 5899999 99999999875 36677663
No 199
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}
Probab=99.83 E-value=5e-20 Score=188.28 Aligned_cols=174 Identities=14% Similarity=0.192 Sum_probs=133.6
Q ss_pred CeEEeCCCceEEeCCCeEEEEEEec-ccCceEEEEEECCeeCCC-CceEEecc-----ceEEEccCccCCCeEEEEEEEe
Q psy574 100 PYIIRGPKDTTVSASSIIVFECSVG-GDAVLTVHWKRLGSAMPE-DRMSVLPS-----RSLQLSDVRLEDAGEYVCEAEN 172 (977)
Q Consensus 100 P~~~~~p~~~~v~~G~~v~l~C~v~-g~p~~~i~W~k~~~~l~~-~~~~~~~~-----~~L~I~~v~~~D~G~Y~C~a~n 172 (977)
|.|.. +.+..+.+|+.+.|.|.+. +.|.+.|.|+||+..+.. .++.+..+ .+|.|.+++.+|+|.|+|.|.|
T Consensus 4 p~~~~-~~~~~v~eg~~v~l~c~~~~~~P~p~i~W~kng~~l~~~~~~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a~N 82 (207)
T 3rbs_A 4 PFTKS-ELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQD 82 (207)
T ss_dssp --CCE-EEEEEECGGGCEEEEEECSCCCSCCEEEEEETTEEECSSSSCEEEECTTTCEEEEEESCCCGGGCEEEEEEEEE
T ss_pred Ceeec-CCceEEEeCCeEEEEEEEecCCCCCEEEEEECCEECccCCCEEEEEeCCCCEEEEEECCCChhhCEEEEEEEEC
Confidence 34433 3367889999999999995 579999999999999864 34444422 2699999999999999999999
Q ss_pred CCeeEEEEEEEEEe---------------------eCCeEEecCCCcEEeeCCeEEEEEEEecC-CCCeEEEEEcCeeee
Q psy574 173 AVGKISASATLTVQ---------------------MAPIVRERPSDLRLEVGRDAVFLCGIEGS-PPPSTFWMLEGNRSL 230 (977)
Q Consensus 173 ~~g~~~~~~~L~V~---------------------~~p~~~~~p~~~~v~~G~~v~L~C~~~g~-p~~~i~W~~~g~~~~ 230 (977)
. .....+.+.+. .+|.|...+ ...+.+|+.+.|.|.+.|. |.|.+.|+|+|..+.
T Consensus 83 g--~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~-~~~v~~g~~v~l~C~v~g~~P~p~i~W~k~g~~l~ 159 (207)
T 3rbs_A 83 G--KATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYL-SWEVTGECNVLLKCKVANIKKETHIVWYKDEREIS 159 (207)
T ss_dssp T--TEEEEEEEEECTHHHHHHHHHHHHHHHHHHHHTSSEEEEEE-EEEEETTTEEEEEEEEESCCTTCEEEEEETTEEEC
T ss_pred C--CeEEEEEEEEEccchhhhcccccccccccccCCCCceEecC-CcEEcCCCcEEEEEEEeCCCCCCEEEEEECCEECC
Confidence 4 33344443321 267776655 4788999999999999998 999999999998874
Q ss_pred ecCCCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEE
Q psy574 231 IYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVS 286 (977)
Q Consensus 231 ~~~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~ 286 (977)
. ..++. ...+..+|.|.++..+|+|.|+ |.|.|..|....++.|.++
T Consensus 160 ~-----~~~~~---~~~~~~~L~I~~v~~~D~G~Y~-C~a~N~~G~~~~~~~L~~~ 206 (207)
T 3rbs_A 160 V-----DEKHD---FKDGICTLLITEFSKKDAGIYE-VILKDDRGKDKSRLKLVDE 206 (207)
T ss_dssp C-----CCCCC---CSSEEEEEEETTCCGGGCEEEE-EEEEETTEEEEEEEEECCC
T ss_pred C-----CCceE---cCCCEEEEEECCCCcccCEEEE-EEEEcCCCEEEEEEEEecC
Confidence 2 12221 1134458999999999999999 9999999999888887653
No 200
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B
Probab=99.83 E-value=4.2e-20 Score=188.37 Aligned_cols=175 Identities=17% Similarity=0.202 Sum_probs=129.4
Q ss_pred eecccceEEeCCCcEEEEEECCCCCCC-----CeEEEEeCCEEeecCCCceEEEecC------cEEEEcCCCCCCCeEEE
Q psy574 9 RVQPKSQRVAAGDTALLECGPPRGHPE-----PTLVWKKNGHPIDFENSKRLRLVDG------TNLAIQDSRKTDDGRYQ 77 (977)
Q Consensus 9 ~~~p~~~~v~~G~~v~L~C~~~~g~P~-----~~v~W~k~g~~l~~~~~~r~~~~~~------g~L~I~~v~~~D~G~Y~ 77 (977)
...+..+.+.+|++++|.|.+ .+.|. +.|.|+|++..+ ....+|+.+..+ ++|.|.+++.+|+|.|+
T Consensus 6 ~~p~~~v~v~~G~~v~L~C~~-~~~p~~~~~~~~v~W~k~~~~~-~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~ 83 (202)
T 3bp6_B 6 TAPKEVYTVDVGSSVSLECDF-DRRECTELEGIRASLQKVENDT-SLQSERATLLEEQLPLGKALFHIPSVQVRDSGQYR 83 (202)
T ss_dssp ECSCSEEEEETTSCEEEEEEE-CTTC---CTTEEEEEEECC--C-CCBCSSCEECGGGGGGTEEEEEECSCCGGGCEEEE
T ss_pred ecCCcCEEEeCCCcEEEEEEe-cCCCCCCccceEEEEEcCCCcc-cccCCceEEeeccccCCeeEEEECCCCHHHCcEEE
Confidence 345667999999999999999 67775 899999944443 233346665543 67999999999999999
Q ss_pred EEEEecCceeeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceEEecc---ceEE
Q psy574 78 CVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPS---RSLQ 154 (977)
Q Consensus 78 C~a~n~~g~~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~~~---~~L~ 154 (977)
|.+.|..+.. +..+.|.|..++..... ....+.+|+.+.|.|.+.|.|.+.|.|++++..+.. ......+ ..+.
T Consensus 84 C~~~~~~~~~-~~~~~l~V~~~~~~p~~-~~~~~~~g~~v~l~C~~~g~P~p~v~W~~~~~~~~~-~~~~~~~~~~~~~~ 160 (202)
T 3bp6_B 84 CLVICGAAWD-YKYLTVKVKASYMRIDT-RILEVPGTGEVQLTCQARGYPLAEVSWQNVSVPANT-SHIRTPEGLYQVTS 160 (202)
T ss_dssp EEEEETTEEE-EEEEEEEEEBCCCCEEE-EEEECTTTCCEEEEEEEEEBSCCEEEETTCCSCCEE-EEEECTTSCEEEEE
T ss_pred EEEEeCCCcc-eEEEEEEecCCCCcccE-EEEecCCCCeEEEEEEccccCCceEEEEeCCCCccC-ceeeCCCCCEEEEE
Confidence 9999988754 56788888865421111 012456899999999999999999999998876532 1111122 3466
Q ss_pred EccCccCCCeEEEEEEEeCCeeEEEEEEEEEeeC
Q psy574 155 LSDVRLEDAGEYVCEAENAVGKISASATLTVQMA 188 (977)
Q Consensus 155 I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~~~ 188 (977)
|.++..+|.|.|+|.|.|..|.....+.|.|..+
T Consensus 161 i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~v~~~ 194 (202)
T 3bp6_B 161 VLRLKPQPSRNFSCMFWNAHMKELTSAIIDPLSR 194 (202)
T ss_dssp EEEECCCTTCCEEEEEEETTTTEEEEEEECC---
T ss_pred EEEEEcCCCCEEEEEEEcCCcccccEEEEEecCc
Confidence 7789999999999999999999888888887643
No 201
>1cd9_B G-CSF-R, protein (G-CSF receptor); class1 cytokine, hematopoietic receptor, signal transduction cytokine; HET: NAG; 2.80A {Mus musculus} SCOP: b.1.2.1 b.1.2.1 PDB: 1pgr_B 1cto_A 1gcf_A
Probab=99.83 E-value=2.2e-19 Score=185.01 Aligned_cols=192 Identities=13% Similarity=0.072 Sum_probs=142.9
Q ss_pred CceEEEEEeeEe-CCCeEEEEEEec-CCCccceEEEEEEecCCC-----CCceEEEEeecCccceEEECCCCCCcEEEEE
Q psy574 544 GSLIELTEVKPM-TSTSVKLTWEIL-NTDYIEGVYIYSRGLDPP-----ASVAMLTVLHAGEASGFLVTGLAHYSRYEFF 616 (977)
Q Consensus 544 ~~~~~~l~~~~~-~~tsv~lsW~~p-~~~~i~~Y~v~y~~~~~~-----~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~ 616 (977)
+.++.++.+... ..++|.|+|+++ .++....|.|+|+..... ..+..+..........+.+.+|.+++.|.|+
T Consensus 5 P~~P~~l~c~~~~~~~~~~~~W~p~~~~~~~~~Y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~Y~~~ 84 (215)
T 1cd9_B 5 PASPSNLSCLMHLTTNSLVCQWEPGPETHLPTSFILKSFRSRADCQYQGDTIPDCVAKKRQNNCSIPRKNLLLYQYMAIW 84 (215)
T ss_dssp CCCCEEEEEEEETTTTEEEEEEECCSCCSSCCEEEEEEEECCGGGCSCCCEEEEEECCTTCCEEEEEGGGCCTTSCEEEE
T ss_pred CCCCeeeeeecCCCcccEEEEecCCCCCCCceeEEEEEEecCCcccccccccccCCCCCCCcEEEECCcccccceEEEEE
Confidence 445688998887 689999999998 444456899999976431 1122222111233456777899999999999
Q ss_pred EEEeecceeCCCCCceEEeccCCCCCCCCceeEEEEe------cCcEEEEEeeCCCCCCCCeeeeEEEEEEE-ecCCcce
Q psy574 617 LVPFFGSVDGKPSNLRAVRTLECEPSGVPQLTDPVLL------NATSVLLKWKPPPVGTHNGVIRTYQIIVG-GGNNSAL 689 (977)
Q Consensus 617 V~a~n~~g~g~~s~~~~~~T~~~~P~~~P~~v~~~~~------~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~-~~~~~~~ 689 (977)
|.|.|..|.+ .|..+.+.+.+.++++||.++++... +.+++.|+|++|. ..+..+++|+|+|+ ..+...+
T Consensus 85 V~A~N~~G~~-~s~~~~~~~~~~v~p~pP~~~~~~~~~~~~~~~~~~~~l~W~~p~--~~~~~~l~Y~v~y~~~~~~~~w 161 (215)
T 1cd9_B 85 VQAENMLGSS-ESPKLCLDPMDVVKLEPPMLQALDIGPDVVSHQPGCLWLSWKPWK--PSEYMEQECELRYQPQLKGANW 161 (215)
T ss_dssp EEEEETTEEE-ECCCEEECGGGGBCCCCCEEEECCC-------CCSCEEEEEECCG--GGTTSCEEEEEEEEESSTTCCC
T ss_pred EEEECCCCCc-cCccEEEchHHceEeCCCcEEEEEEeccccCCCCCeEEEEEeCCC--CCCeEEEEEEEEEccCCCCCCc
Confidence 9999999987 45667888877777789999988775 5788999999994 33444589999999 5443333
Q ss_pred EE-EEecCCcCeEEecCCCCCceEEEEEEEEcCCCcC---CCCCceEEeecCC
Q psy574 690 IN-MTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTG---PYSRPALLSLTSG 738 (977)
Q Consensus 690 ~~-~~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~~G~g---~~S~~~~~~t~~~ 738 (977)
.. .......+.+.|.+|+|++.|.|+|+|++.+|.| .+|+++.++|.+.
T Consensus 162 ~~~~~~~~~~~~~~l~~L~p~t~Y~~~Vra~~~~g~G~wS~wS~~~~~~T~e~ 214 (215)
T 1cd9_B 162 TLVFHLPSSKDQFELCGLHQAPVYTLQMRCIRSSLPGFWSPWSPGLQLRPTMK 214 (215)
T ss_dssp EEEEEEESCEEEEEECCCCSCSCEEEEEEEEESSSCCCCCCCCCCEEECCCC-
T ss_pred EEEecccCcceEEEEcCCCCCCEEEEEEEeeECCCCCCCcCCCCccceecCCC
Confidence 32 2334567889999999999999999999997765 6889999888653
No 202
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A
Probab=99.83 E-value=1e-19 Score=186.86 Aligned_cols=188 Identities=30% Similarity=0.482 Sum_probs=145.6
Q ss_pred cCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCC------ceEEeccceEE-----EccCccCCCeEE
Q psy574 98 VKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED------RMSVLPSRSLQ-----LSDVRLEDAGEY 166 (977)
Q Consensus 98 ~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~------~~~~~~~~~L~-----I~~v~~~D~G~Y 166 (977)
.+|.+...|.+..+.+|+++.|.|.+.|.|.+.+.|+|++..+... +.....++.+. |.+++.+|+|.|
T Consensus 8 ~pp~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y 87 (212)
T 2v9r_A 8 FPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVY 87 (212)
T ss_dssp EEEEEEECCCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCTTCSEEECTTSCEEESSCCCCSSCCCSCEEE
T ss_pred CCcceecCCCceEEeCCCcEEEEEEcCCCCCCEEEEEECCEEeeccccccccceEEecCCcEEEEEEEecCCCcccCeEE
Confidence 4678888999999999999999999999999999999999887542 22233444444 455689999999
Q ss_pred EEEEEeCCeeE-EEEEEEEEee-CCeEEecCCCcEEeeCCeEEEEEEE-ecCCCCeEEEEEcCeeeeecCCCccccEEEE
Q psy574 167 VCEAENAVGKI-SASATLTVQM-APIVRERPSDLRLEVGRDAVFLCGI-EGSPPPSTFWMLEGNRSLIYPGDRVDNIQAE 243 (977)
Q Consensus 167 ~C~a~n~~g~~-~~~~~L~V~~-~p~~~~~p~~~~v~~G~~v~L~C~~-~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~ 243 (977)
+|.+.|..|.. +..+.|.|.. ++.+...+....+.+|+.++|.|.+ .+.|.+.+.|++++..+.. ...++...
T Consensus 88 ~C~~~n~~g~~~~~~~~l~V~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~l~~----~~~~~~~~ 163 (212)
T 2v9r_A 88 VCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDD----KDERITIR 163 (212)
T ss_dssp EEEEEETTEEEECCCEEEEECEECSSCSBCCCCEEEETTSCEEEECBCCCEESCCEEEEEETTEEECT----TSTTEEEE
T ss_pred EEEEECCCCceeecceEEEEEeccccceeCCCceEecCCCcEEEEEecCCCCCCCEEEEEECCccCCC----CcceEEcc
Confidence 99999998874 5577888875 5556667778899999999999998 8999999999999987742 22334333
Q ss_pred EccCCceEEEEeecccCCCCeEEEEEEEcCCCceeE-EEEEEEECCCCCCCCeEEeCC
Q psy574 244 ITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLA-RASLTVSGPDPNPPPVILFGP 300 (977)
Q Consensus 244 ~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~-~~~l~V~~~~~~~pp~i~~~p 300 (977)
++ .|.|.+++.+|+|.|+ |.|.|..|.... .+.|.|.. +|.+...|
T Consensus 164 ---~~--~L~i~~~~~~d~G~Y~-C~a~N~~g~~~s~~~~l~V~~-----~P~~~~~P 210 (212)
T 2v9r_A 164 ---GG--KLMITYTRKSDAGKYV-CVGTNMVGERESEVAELTVLE-----RPSFVKAA 210 (212)
T ss_dssp ---TT--EEEESSCCGGGCEEEE-EEEEETTEEEECCCEEEEEEC-------------
T ss_pred ---CC--eEEEeeCCHhhCeeEE-EEEecccCceecceEEEEEEe-----CchHhhhc
Confidence 24 8999999999999999 999999998655 47899988 66666554
No 203
>3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural protein; 1.65A {Homo sapiens}
Probab=99.82 E-value=3.7e-19 Score=180.35 Aligned_cols=184 Identities=23% Similarity=0.282 Sum_probs=149.4
Q ss_pred CCCCCCCCCeEEeeCCCceEEEEEcCCCCCCcccceEEEEEeecCCCCCCCCCCCCcccEEEeceecCcCeEEEEccCCC
Q psy574 396 TYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVG 475 (977)
Q Consensus 396 ~~p~~P~~~~v~~~~~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~i~~L~p~ 475 (977)
..|++|.++.+...+.+++.|+|.++...++..+.+|.|+++..... .|..........++.+.+|.|+
T Consensus 4 ~~P~~P~~l~~~~~~~~sv~l~W~~p~~~~~~~i~~Y~v~~~~~~~~-----------~~~~~~~~~~~~~~~~~~L~p~ 72 (197)
T 3lpw_A 4 DTPGPPQDLKVKEVTKTSVTLTWDPPLLDGGSKIKNYIVEKRESTRK-----------AYSTVATNCHKTSWKVDQLQEG 72 (197)
T ss_dssp CSCCCCEEEEEEEECSSCEEEEEECCSCCTTSCCCEEEEEEEETTCS-----------SCEEEEEEECSSEEEECCCCTT
T ss_pred CCCCCCCCcEEEEecCCEEEEEEcCCccCCCCcccEEEEEEEECCCC-----------ccEEeecCCCccEEEEcCCCCC
Confidence 57999999999999999999999999765666799999999876543 6877766778899999999999
Q ss_pred CeEEEEEEEEcCCCCCCCCCCCceEEeeccccccccccCCcceeecCCCCCCCcchHHHHhhcccccCCceEEEEEeeEe
Q psy574 476 LTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPM 555 (977)
Q Consensus 476 t~Y~~~V~a~n~~G~s~~S~~s~~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~g~~~~~~~~~l~~~~~~~~~~l~~~~~ 555 (977)
+.|.|+|+|.|..|.+.+|......+. ...| .++.++++...
T Consensus 73 t~Y~~~V~a~~~~g~~~~s~~~~~~t~-~~~p-------------------------------------~~p~~~~~~~~ 114 (197)
T 3lpw_A 73 CSYYFRVLAENEYGIGLPAETAESVKA-SERP-------------------------------------LPPGKITLMDV 114 (197)
T ss_dssp CEEEEEEEEEETTEECCCEECSSCEES-CCCC-------------------------------------CCCSCEEEEEE
T ss_pred CEEEEEEEEEcCccccCCCCCccceec-CCCC-------------------------------------CCCcccEEEec
Confidence 999999999999999888766555544 1111 11245778889
Q ss_pred CCCeEEEEEEec--CC-CccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeecceeCCCCCce
Q psy574 556 TSTSVKLTWEIL--NT-DYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLR 632 (977)
Q Consensus 556 ~~tsv~lsW~~p--~~-~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~g~~s~~~ 632 (977)
+.+++.|+|++| .+ +.+.+|.|+|+..+. ..|..... ...+++.|.+|.|++.|.|+|+|.|..|.|++|...
T Consensus 115 ~~~~v~l~W~~p~~~~~~~i~~Y~v~~~~~~~-~~~~~~~~---~~~~~~~~~~L~p~t~Y~~~V~A~n~~G~s~~S~~s 190 (197)
T 3lpw_A 115 TRNSVSLSWEKPEHDGGSRILGYIVEMQTKGS-DKWATCAT---VKVTEATITGLIQGEEYSFRVSAQNEKGISDPRQLS 190 (197)
T ss_dssp CSSCEEEEECCCSCCTTSCCCEEEEEEEETTC-SCCEEEEE---ESSSEEEECCCCTTCEEEEEEEEEETTEECCCEECS
T ss_pred cCCeEEEEecCCCcCCCCcccEEEEEEEeCCC-CceEEeec---ccccEEEeCCcCCCCEEEEEEEEEeCCccCCCccCc
Confidence 999999999998 33 489999999998763 45554332 356889999999999999999999999999877643
No 204
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.82 E-value=8.8e-21 Score=211.17 Aligned_cols=178 Identities=19% Similarity=0.231 Sum_probs=147.5
Q ss_pred cccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCe-EEEEEEEec
Q psy574 5 REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDG-RYQCVVKNV 83 (977)
Q Consensus 5 ~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G-~Y~C~a~n~ 83 (977)
.|.|...|.++.+.+|++++|.|.+ .+.|.+.|.|++++..+.... .+.....+++|.|.+++.+|+| .|+|+|.|.
T Consensus 158 ~P~i~~~~~~~~v~~G~~v~L~C~~-~g~p~p~i~W~~~~~~~~~~~-~~~~~~~~~~L~i~~v~~~D~G~~Y~C~a~n~ 235 (347)
T 2ifg_A 158 VPTLKVQVPNASVDVGDDVLLRCQV-EGRGLEQAGWILTELEQSATV-MKSGGLPSLGLTLANVTSDLNRKNVTCWAEND 235 (347)
T ss_dssp CCEEEEECCSSCCBTTCCEEEEEEE-ECSSCCCCCEEESCCCSSEEE-CCCCCSSEEEEEEESCCSTTTTCCEEECCEET
T ss_pred CCceeccCCceEEeCCCcEEEEEEE-ecCCCCEEEEEcCCceeeccc-ccceecccceEEEeeCChHHCCCeEEEEEEcC
Confidence 5788889999999999999999999 889999999999987653211 1222334678999999999999 999999999
Q ss_pred CceeeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceEEe-----------ccce
Q psy574 84 AGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVL-----------PSRS 152 (977)
Q Consensus 84 ~g~~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~-----------~~~~ 152 (977)
.|.. +..+.|.|..+|.+ ....+.+|+.++|.|.+.|.|.|.|.|+|++..+...+.... .+++
T Consensus 236 ~g~~-~~~~~l~V~~~P~i----~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~ 310 (347)
T 2ifg_A 236 VGRA-EVSVQVNVSFPASV----QLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGC 310 (347)
T ss_dssp TEEC-CEEECCCCBEEEEE----EECCCEESSSEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEECCCCTTCCCEEEE
T ss_pred CCCE-EEEEEEEEcCCCee----eeccCccCceEEEEEEeeecCCCcEEEEeCCEECCCCcceeeEEEeecCCCcccceE
Confidence 8865 56678888888885 112346799999999999999999999999999876543321 2567
Q ss_pred EEEccCccCCCeEEEEEEEeCCeeEEEEEEEEEeeCC
Q psy574 153 LQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAP 189 (977)
Q Consensus 153 L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~~~p 189 (977)
|.|.+++.+|+|.|+|.|.|..|..++.+.|.|..+|
T Consensus 311 L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~P 347 (347)
T 2ifg_A 311 LRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNP 347 (347)
T ss_dssp EEESSCCGGGCEEEEEEEEETTEEEEEEEEECSCCCC
T ss_pred EEECCCCcccCceEEEEEecCCCceeeEEEEEecCCC
Confidence 9999999999999999999999999999999998765
No 205
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.82 E-value=3e-19 Score=178.93 Aligned_cols=161 Identities=19% Similarity=0.310 Sum_probs=130.4
Q ss_pred eEEeCCCcEEEEEECCCCCCCC--eEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecCceeeeEeE
Q psy574 15 QRVAAGDTALLECGPPRGHPEP--TLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDA 92 (977)
Q Consensus 15 ~~v~~G~~v~L~C~~~~g~P~~--~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~~ 92 (977)
..+.+|++++|.|.+ .+.|.+ .+.|+|||+.+...... .....|.|. +.+|+|.|+|.+.|. .+..+
T Consensus 8 ~~v~~G~~v~l~C~~-~~~~~p~~~~~W~k~~~~l~~~~~~----~~~~~l~i~--~~~d~G~Y~C~~~n~----~~~~~ 76 (184)
T 3b5h_A 8 TVEDLGSKILLTCSL-NDSATEVTGHRWLKGGVVLKEDALP----GQKTEFKVD--SDDQWGEYSCVFLPE----PMGTA 76 (184)
T ss_dssp EEEEETTEEEEEEEE-ESCSSCCCEEEEESSSEEEECTTCC----CSEEEEEEC--GGGCCEEEEEEEEST----TSCEE
T ss_pred EEEecCCCEEEEEEC-CCCCCCceEEEEEeCCEEeeccccc----CCcEEEEEe--chhhCeEEEEEEECC----cCcEE
Confidence 568999999999998 555655 99999999999543211 112356666 689999999999973 23567
Q ss_pred EEEEEcCCeEEeCCCceEEeCCCeEEEEEEecccC-ceEEEEEE---CCe-eCCC---CceEEecc---ceEEEccCc-c
Q psy574 93 VLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDA-VLTVHWKR---LGS-AMPE---DRMSVLPS---RSLQLSDVR-L 160 (977)
Q Consensus 93 ~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p-~~~i~W~k---~~~-~l~~---~~~~~~~~---~~L~I~~v~-~ 160 (977)
.|.|..+|.+...+....+.+|+.+.|.|.+.|.| .+.+.|+| ++. .+.. +++.+..+ ..|.|.+++ .
T Consensus 77 ~l~V~~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~ 156 (184)
T 3b5h_A 77 NIQLHGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNME 156 (184)
T ss_dssp EEEECCSCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTT
T ss_pred EEEEecCCceeecCCCcEEcCCCcEEEEEEECCCCCCCeEEEEEcCCCCCEEeecCCCCEEEEEecCCeeEEEEeecccc
Confidence 89999999999999888999999999999999999 79999999 444 3432 45555433 489999999 8
Q ss_pred CCCeEEEEEEEeCCeeEEEEEEEEEe
Q psy574 161 EDAGEYVCEAENAVGKISASATLTVQ 186 (977)
Q Consensus 161 ~D~G~Y~C~a~n~~g~~~~~~~L~V~ 186 (977)
+|+|.|+|.|.|..|.....+.|.|.
T Consensus 157 ~d~G~Y~C~a~N~~g~~~~~~~l~V~ 182 (184)
T 3b5h_A 157 ADPGQYRCNGTSSKGSDQAIITLRVR 182 (184)
T ss_dssp TSSEEEEEEEEETTEEEEEEEEEEEC
T ss_pred ccCceEEEEEEeCCCcceEEEEEEEe
Confidence 99999999999999998888998886
No 206
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}
Probab=99.82 E-value=2.2e-19 Score=185.46 Aligned_cols=170 Identities=21% Similarity=0.313 Sum_probs=145.0
Q ss_pred cCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceEEeccceEEEccCccCCCeEEEEEEEeCCeeE
Q psy574 98 VKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKI 177 (977)
Q Consensus 98 ~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~ 177 (977)
..+.+...|.+..+.+|+++.|.|.+.+.|.+.+.|+|++..+... .+..|.|.+++.+|+|.|+|.+.|..+..
T Consensus 17 ~~~~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~-----~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~ 91 (218)
T 3k0w_A 17 RGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNG-----NTSELIFNAVHVKDAGFYVCRVNNNFTFE 91 (218)
T ss_dssp --CCEEECCCCEEEETTSBEEEECEETTTTSSEEEEEETTEECTTC-----CSSEEEETTCCGGGCEEEEEEEECTTCCE
T ss_pred CCCEEEECCCCeEEeCCCcEEEEeeecCCCCCEEEEEECCEECCCC-----CCCEEEEccCChhhCeEeEEEEEcCCCCc
Confidence 4577888999999999999999999999999999999999988654 45789999999999999999999987753
Q ss_pred -EEEEEEEEeeC---------------CeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCccccEE
Q psy574 178 -SASATLTVQMA---------------PIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQ 241 (977)
Q Consensus 178 -~~~~~L~V~~~---------------p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~ 241 (977)
+..+.|.|... |.+...+....+.+|+.++|.|.+.+.|.+.+.|++++..+...
T Consensus 92 ~s~~~~l~V~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~~~~~~~~--------- 162 (218)
T 3k0w_A 92 FSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHE--------- 162 (218)
T ss_dssp ECCCEEEEEECCCGGGCTTCCSBCCSSCEEEECCCCEEECTTCCEEEECEEEBSSCCEEEEEETTEECTTC---------
T ss_pred eeeEEEEEEEccCcccccccccccCCCceEEECCCceeecCCCcEEEEEEecccCCCeEEEEECCEECCCC---------
Confidence 56688888755 67888888889999999999999999999999999999876321
Q ss_pred EEEccCCceEEEEeecccCCCCeEEEEEEEcCCCc-eeEEEEEEEECC
Q psy574 242 AEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGS-DLARASLTVSGP 288 (977)
Q Consensus 242 ~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~-~~~~~~l~V~~~ 288 (977)
....|.|.++..+|+|.|+ |.|.|..|. .+..+.|.|...
T Consensus 163 ------~~~~L~i~~v~~~d~G~Y~-C~a~n~~g~~~s~~~~l~V~~~ 203 (218)
T 3k0w_A 163 ------TKKLYMVPYVDLEHQGTYW-CHVYNDRDSQDSKKVEIIIDEL 203 (218)
T ss_dssp ------CSSEEEESSCCGGGCEEEE-EEEECSSCEEECCCEEEEECC-
T ss_pred ------CCCEEEEeecChhcCEEEE-EEEEcCCCCceeeeEEEEEeCC
Confidence 1238999999999999999 999998887 456677888763
No 207
>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*
Probab=99.82 E-value=8e-20 Score=187.96 Aligned_cols=175 Identities=14% Similarity=0.277 Sum_probs=135.0
Q ss_pred ccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeC--CEE---ee-------cCCCceEEEe---cCcEEEEcCCCC
Q psy574 6 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKN--GHP---ID-------FENSKRLRLV---DGTNLAIQDSRK 70 (977)
Q Consensus 6 ~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~--g~~---l~-------~~~~~r~~~~---~~g~L~I~~v~~ 70 (977)
+.+...| .+.+.+|++++|.|.+ .+.|.+.|.|+|+ +.. +. .....|+.+. .+++|.|.+++.
T Consensus 2 ~~v~~~~-~~~v~~G~~v~L~C~~-~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~ 79 (213)
T 3mj8_L 2 YTLTQPP-LVSVALGQKATITCSG-DKLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSNSGNMATLTISKAQA 79 (213)
T ss_dssp CCBBCCS-EEEEETTSCEEEEEEC-SSTTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCG
T ss_pred eeEEeCC-cEEEeCCCCEEEEEEc-CCCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEecCCEEEEEECCCCh
Confidence 4566777 8999999999999999 6889999999982 221 11 1123466643 235799999999
Q ss_pred CCCeEEEEEEEecCc--eeeeEeEEEEEE----cCCeEEeCCCceEEeCCCeEEEEEEeccc-Cc-eEEEEEECCeeCCC
Q psy574 71 TDDGRYQCVVKNVAG--TRESTDAVLRVL----VKPYIIRGPKDTTVSASSIIVFECSVGGD-AV-LTVHWKRLGSAMPE 142 (977)
Q Consensus 71 ~D~G~Y~C~a~n~~g--~~~s~~~~l~V~----~~P~~~~~p~~~~v~~G~~v~l~C~v~g~-p~-~~i~W~k~~~~l~~ 142 (977)
+|+|.|+|.|.+..+ ......+.|.|. .+|.+...+....+.+|+.++|.|.+.|. |. +.|.|+|++..+..
T Consensus 80 ~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~ 159 (213)
T 3mj8_L 80 GDEADYYCQSWDGTNSAWVFGSGTKVTVLGQPNAAPSVTLFPPSSEELKTNQATLVCMINGFYPADVAVTWEADGTPITQ 159 (213)
T ss_dssp GGCEEEEEEEEETTTTEEEEBCCEEEEEECSCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECT
T ss_pred hhCEEEEEEeccCCcceeEEcCceEEEEeCCCCCCCeEEccCCCcccccCCcEEEEEEeeceeCCCeEEEEEcCCcccCC
Confidence 999999999999887 345566789998 77888877766666799999999999875 43 49999999998864
Q ss_pred Cc---------eEEeccceEEEccCccCCCeEEEEEEEeCCeeEEEEEE
Q psy574 143 DR---------MSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASAT 182 (977)
Q Consensus 143 ~~---------~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~ 182 (977)
+. ........|.|.++..+|.|.|+|.|.|..+.....+.
T Consensus 160 ~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~ 208 (213)
T 3mj8_L 160 GVKTTQPSKSDSKYMATSYLTMTADAWKSRNTFICKVTHGGNTVEKSLS 208 (213)
T ss_dssp TEEECCCEEETTEEEEEEEEEEESHHHHSCSCEEEEEEETTEEEEEEEC
T ss_pred CcccCCcCccCCcEEEEEEEEEeHHHcCCCCEEEEEEEECCccEEeeec
Confidence 21 11112356999999999999999999999877665543
No 208
>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4
Probab=99.81 E-value=2.3e-19 Score=184.03 Aligned_cols=183 Identities=22% Similarity=0.325 Sum_probs=145.9
Q ss_pred CeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeC-------------CCCceEEeccceEEEccCccCCCeEE
Q psy574 100 PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAM-------------PEDRMSVLPSRSLQLSDVRLEDAGEY 166 (977)
Q Consensus 100 P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l-------------~~~~~~~~~~~~L~I~~v~~~D~G~Y 166 (977)
..+...+.+..+.+|+++.|.|.+.+.|.+.+.|+|++..+ ...++.. .+..|.|.+++.+|+|.|
T Consensus 2 ~~v~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~-~~~~L~i~~v~~~D~G~Y 80 (212)
T 1f97_A 2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTF-SSSGITFSSVTRKDNGEY 80 (212)
T ss_dssp CEEECSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEE-ETTEEEESCCCGGGCEEE
T ss_pred ceEEecCCCeEEEcCCCEEEEeEeCCCCCcEEEEEECCCceeeEEecCCcccccccCcEEe-eceeEEEcccCcccCeEE
Confidence 45667788889999999999999999899999999987653 1244444 348999999999999999
Q ss_pred EEEEEeCCe--eEEEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEE-EecCCCCeEEEEEcCe-eeeecCCC----ccc
Q psy574 167 VCEAENAVG--KISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCG-IEGSPPPSTFWMLEGN-RSLIYPGD----RVD 238 (977)
Q Consensus 167 ~C~a~n~~g--~~~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~-~~g~p~~~i~W~~~g~-~~~~~~~~----~~~ 238 (977)
+|.+.|..| ..+..+.|.|..+|.+...+....+.+|+.++|.|. +.+.|.+.+.|++++. .+...... ...
T Consensus 81 ~C~~~~~~g~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~l~~~~~~~~~~~~~ 160 (212)
T 1f97_A 81 TCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNS 160 (212)
T ss_dssp EEEEEETTSSSEEEEEEEEEEEBCCCCCEEECCSEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSS
T ss_pred EEEEEccCCCcccEEEEEEEEEcCCCCcccCCccccCCCCeEEEEEEcccCcCCCEEEEEeCCcccccccccccccccCc
Confidence 999999876 567889999999888777777788999999999999 7899999999999998 66432211 012
Q ss_pred cEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCce--eEEEEEEEEC
Q psy574 239 NIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSD--LARASLTVSG 287 (977)
Q Consensus 239 ~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~--~~~~~l~V~~ 287 (977)
++... .....|.|.+++.+|+|.|+ |.|.|..|.. +..+.|.|..
T Consensus 161 ~~~~~---~~~~~L~i~~~~~~d~G~Y~-C~a~n~~g~~~~s~~~~l~V~~ 207 (212)
T 1f97_A 161 SFTID---PKSGDLIFDPVTAFDSGEYY-CQAQNGYGTAMRSEAAHMDAVE 207 (212)
T ss_dssp CEEEC---TTTCCEEESSCCGGGCEEEE-EEEECSSSCCEECCCEEEEEES
T ss_pred eeEec---CCCceEEEEecChhhCcEEE-EEEccccCCccccceEEEEEEE
Confidence 23222 12348999999999999999 9999999988 4556777765
No 209
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.81 E-value=1.3e-19 Score=189.88 Aligned_cols=179 Identities=16% Similarity=0.142 Sum_probs=135.2
Q ss_pred ccccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEec
Q psy574 4 LREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNV 83 (977)
Q Consensus 4 l~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~ 83 (977)
-+|.|...|.. .+.+|++|+|.|.+ .+ +...+.|+|+|..+............++.|.|.+++.+|+|.|+|.+.+.
T Consensus 6 ~kP~i~~~P~~-~v~~G~~VtL~C~~-~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~ 82 (242)
T 1p6f_A 6 PKPFIWAEPHF-MVPKEKQVTICCQG-NY-GAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVG 82 (242)
T ss_dssp CCCEEEEESCS-EEETTCCEEEEEEC-CT-TCCEEEEEETTEEEEEECCSSCTTCCEEEEEECSCCGGGCEEEEEEEEET
T ss_pred CCCEEEeeCCC-ccCCCCcEEEEEee-CC-CCcEEEEEECCCccccccccccCCcceeEEEecCCCcccCeEEEEEEecC
Confidence 46788889987 89999999999998 33 45689999999887422111111123567999999999999999999876
Q ss_pred Cce-eeeEeEEEEEEc---CCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceEEeccceEEEccCc
Q psy574 84 AGT-RESTDAVLRVLV---KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVR 159 (977)
Q Consensus 84 ~g~-~~s~~~~l~V~~---~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~ 159 (977)
.+. ..+..+.|.|.. +|.+...| ...+.+|++++|.|.+.+. .+.+.|+|++..+.........+..|.|.+++
T Consensus 83 ~~~s~~S~~~~L~V~~~~~~P~i~~~p-~~~v~~G~~vtL~C~~~~~-~~~~~w~k~g~~~~~~~~~~~~~~~l~I~~v~ 160 (242)
T 1p6f_A 83 ELWSEPSNLLDLVVTEMYDTPTLSVHP-GPEVISGEKVTFYCRLDTA-TSMFLLLKEGRSSHVQRGYGKVQAEFPLGPVT 160 (242)
T ss_dssp TEECCCCCCEEEEEECCSCCCEEEEES-CSEEETTCEEEEEEECTTS-CSEEEEEECSSSCEEEEEECSSEEEEEEEECC
T ss_pred CccccCCcceEEEeecccCCCceEccC-CCccCCCCcEEEEEecCCC-CCEEEEEECCCccCccccCCCceEEEEeCCCc
Confidence 543 236677888874 67777666 4578999999999999765 45899999998765421112245789999999
Q ss_pred cCCCeEEEEEEEeCC---eeEEEEEEEEEee
Q psy574 160 LEDAGEYVCEAENAV---GKISASATLTVQM 187 (977)
Q Consensus 160 ~~D~G~Y~C~a~n~~---g~~~~~~~L~V~~ 187 (977)
.+|+|.|+|.+.|.. ...+..+.|.|..
T Consensus 161 ~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~~ 191 (242)
T 1p6f_A 161 TAHRGTYRCFGSYNNHAWSFPSEPVKLLVTG 191 (242)
T ss_dssp GGGCEEEEEEEEEETTEECCCCCCEEEEEEC
T ss_pred cccCEEEEEEEECCCCcccCCCCCEEEEEec
Confidence 999999999999864 2345678888884
No 210
>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A {Homo sapiens} PDB: 1fnh_A
Probab=99.81 E-value=2.2e-18 Score=186.58 Aligned_cols=174 Identities=17% Similarity=0.258 Sum_probs=147.8
Q ss_pred CceEEEEEeeEeCCCeEEEEEEecCCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeecc
Q psy574 544 GSLIELTEVKPMTSTSVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGS 623 (977)
Q Consensus 544 ~~~~~~l~~~~~~~tsv~lsW~~p~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~ 623 (977)
+.+|.++++...+.++|.|+|++| ++.+.+|.|+|+..+....|....+. .+.+++.|.+|.|++.|.|+|+|.|..
T Consensus 21 p~~P~~l~~~~~~~~sv~l~W~~p-~~~~~~Y~v~~~~~~~~~~~~~~~~~--~~~~~~~i~~L~p~t~Y~~~V~a~~~~ 97 (290)
T 3r8q_A 21 IPAPTDLKFTQVTPTSLSAQWTPP-NVQLTGYRVRVTPKEKTGPMKEINLA--PDSSSVVVSGLMVATKYEVSVYALKDT 97 (290)
T ss_dssp CCCCEEEEEEEECSSCEEEEEECC-SSCCCEEEEEEEESSSSSCCEEEEEC--TTCCEEEECSCCSSCEEEEEEEEEETT
T ss_pred CCCCCceEEEECCCCEEEEEEeCC-CCCeeEEEEEEEeCCCCCceEEEEcC--CCccEEEeCCCCCCCEEEEEEEEEeCC
Confidence 445689999999999999999998 45799999999998766667665543 577899999999999999999999999
Q ss_pred eeCCCCCceEEeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCcceEEEEecCCcCeEEe
Q psy574 624 VDGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLL 703 (977)
Q Consensus 624 g~g~~s~~~~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~l 703 (977)
|.|.++. ..++|.+.+ .+|.++++...+.+++.|+|++| +|.+.+|.|+|+..+........+....++++|
T Consensus 98 g~s~~s~-~~~~t~~~~--~~P~~l~~~~~~~~sv~l~W~~p-----~~~~~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i 169 (290)
T 3r8q_A 98 LTSRPAQ-GVVTTLENV--SPPRRARVTDATETTITISWRTK-----TETITGFQVDAVPANGQTPIQRTIKPDVRSYTI 169 (290)
T ss_dssp EECCCEE-EEEECCCCC--CCCEEEEEEEECSSCEEEEEECC-----SCCCCEEEEEEEESSSCCCEEEEECTTCSEEEE
T ss_pred CCCCCcc-eeEecCCCC--CCCceeEEEEcCCCeEEEEEeCC-----CCcccEEEEEEEECCCCcceEEecCCCccEEEE
Confidence 9998774 667776654 38899999998999999999997 468899999999866444555667788899999
Q ss_pred cCCCCCceEEEEEEEEcCCCcCCCC
Q psy574 704 TNLSAGIRYSVSLAATNRAGTGPYS 728 (977)
Q Consensus 704 ~~L~p~t~Y~~~V~A~~~~G~g~~S 728 (977)
.+|.|++.|.|+|+|.|..|.|..+
T Consensus 170 ~~L~p~t~Y~~~V~A~n~~g~s~~~ 194 (290)
T 3r8q_A 170 TGLQPGTDYKIYLYTLNDNARSSPV 194 (290)
T ss_dssp CSCCTTCEEEEEEEEEETTEECCCE
T ss_pred CCCCCCCEEEEEEEEEeCCcccCCE
Confidence 9999999999999999999987653
No 211
>2gee_A Hypothetical protein; fibronectin, EIIIB, cancer, neovascularization, cell adhesion, protein binding, oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A
Probab=99.81 E-value=3e-18 Score=174.72 Aligned_cols=178 Identities=17% Similarity=0.282 Sum_probs=140.7
Q ss_pred CCCCCCCCCCeEEeeCCCceEEEEEcCCCCCCcccceEEEEEeecCCCCCCCCCCCCcccEEEeceecCcCeEEEEccCC
Q psy574 395 STYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTV 474 (977)
Q Consensus 395 ~~~p~~P~~~~v~~~~~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~i~~L~p 474 (977)
..+| +|.++.+..++.+++.|+|.++.. +.+.+|.|+|+..+... .+..........++++.+|.|
T Consensus 21 ~~~P-~P~~l~~~~~~~~sv~lsW~~p~~---~~i~~Y~v~~~~~~~~~----------~~~~~~~~~~~~~~~i~~L~p 86 (203)
T 2gee_A 21 MEVP-QPTDLSFVDITDSSIGLRWTPLNS---STIIGYRITVVAAGEGI----------PIFEDFVDSSVGYYTVTGLEP 86 (203)
T ss_dssp SCCC-CCEEEEEECCTTTCEEEEEECCSS---SSCCEEEEEEEESSSSS----------CCEEEEEETTCCEEEECSCCT
T ss_pred ccCc-CCCccEEEecCCCEEEEEecCCCC---CCccEEEEEEEECCCCC----------CceeEEcCCCccEEEeCCCCC
Confidence 3567 789999999999999999999864 57899999998765442 334444456788999999999
Q ss_pred CCeEEEEEEEEcCCCCCCCCCCCceEEeeccccccccccCCcceeecCCCCCCCcchHHHHhhcccccCCceEEEEEeeE
Q psy574 475 GLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKP 554 (977)
Q Consensus 475 ~t~Y~~~V~a~n~~G~s~~S~~s~~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~g~~~~~~~~~l~~~~~~~~~~l~~~~ 554 (977)
++.|.|+|+|.|..|.|.++ .+.+....| ++.++++..
T Consensus 87 ~t~Y~~~V~a~~~~g~s~~~----~~~t~~~~p--------------------------------------~P~~l~~~~ 124 (203)
T 2gee_A 87 GIDYDISVYTVKNGGESTPT----TLTQQTAVP--------------------------------------PPTDLRFTN 124 (203)
T ss_dssp TCEEEEEEEEESSSCBCCCE----EEEEECCCC--------------------------------------CCEEEEEEE
T ss_pred CCEEEEEEEEEeCCCccccE----eeeecCCCc--------------------------------------CCCceEEEE
Confidence 99999999999988876543 222211111 246889999
Q ss_pred eCCCeEEEEEEecCCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeecceeCCCCC
Q psy574 555 MTSTSVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSN 630 (977)
Q Consensus 555 ~~~tsv~lsW~~p~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~g~~s~ 630 (977)
.+.++|.|+|++|.++.+.+|.|+|+.......+....+ ....+++.|.+|+|++.|.|+|+|.|..|.|++..
T Consensus 125 ~~~~sv~l~W~~p~~~~i~~Y~v~~~~~~~~~~~~~~~~--~~~~~~~~i~~L~p~t~Y~~~V~A~~~~g~s~p~~ 198 (203)
T 2gee_A 125 IGPDTMRVTWAPPPSIDLTNFLVRYSPVKNEEDVAELSI--SPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLR 198 (203)
T ss_dssp EETTEEEEEEECCSSCCCSEEEEEEEETTCGGGCEEEEE--CTTCCEEEECSCCTTCEEEEEEEEEETTEECCCEE
T ss_pred cCCCEEEEEEcCCCCCCccEEEEEEEECCCCCccEEEEc--CCCcCEEEECCCCCCCEEEEEEEEecCCCcCCCee
Confidence 999999999999977789999999998765444543333 46788999999999999999999999999986554
No 212
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}
Probab=99.81 E-value=6.3e-19 Score=180.92 Aligned_cols=170 Identities=21% Similarity=0.266 Sum_probs=139.7
Q ss_pred eCCCeEEEEEEeccc-CceEEEEEECCeeCCC-CceEEecc---ceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEEe
Q psy574 112 SASSIIVFECSVGGD-AVLTVHWKRLGSAMPE-DRMSVLPS---RSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQ 186 (977)
Q Consensus 112 ~~G~~v~l~C~v~g~-p~~~i~W~k~~~~l~~-~~~~~~~~---~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~ 186 (977)
..++.+.|.|.+.+. |.+.|.|+|++..+.. .++.+..+ ..|.|.+++.+|+|.|+|.|.|..+.....+.|.|.
T Consensus 15 c~~~~~~l~C~~~~~~p~~~i~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~v~ 94 (212)
T 2r15_A 15 STAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQ 94 (212)
T ss_dssp ECSSEEEEEEEBSSCCSSCEEEEEETTEECCCCSSEEEEEETTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECHH
T ss_pred EcCceEEEEEEEeccCCCceEEEEECCEEccCCCeEEEEEeCCEEEEEECCCCcccCEEEEEEEecCCcceEEEEEEEEe
Confidence 467888999999774 6889999999998865 45544322 459999999999999999999998888888888765
Q ss_pred e--------------------CCe-EEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCccccEEEEEc
Q psy574 187 M--------------------API-VRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEIT 245 (977)
Q Consensus 187 ~--------------------~p~-~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~ 245 (977)
. .|. +...|....+.+|+.++|.|.+.+.|.+.+.|++++..+. ...++.+...
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~-----~~~~~~~~~~ 169 (212)
T 2r15_A 95 AYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALA-----QTDHCNLKFE 169 (212)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCEEEEBCCSEEEEETTCCEEEEEEEECSSCCEEEEEETTEEEC-----CCSSEEEEEE
T ss_pred eccchhhhccccCcccccccCCCcccccCCCcEEEccCCeEEEEEEEcCCCCceEEEEECCeECc-----cCCCEEEEEc
Confidence 2 343 3444666789999999999999999999999999998874 3445666654
Q ss_pred cCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEEC
Q psy574 246 SDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSG 287 (977)
Q Consensus 246 ~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~ 287 (977)
.++.+.|.|.+++.+|.|.|+ |.|.|..|.....+.|.|..
T Consensus 170 ~~~~~~L~i~~~~~~d~G~Y~-C~a~N~~g~~~~~~~l~V~~ 210 (212)
T 2r15_A 170 AGRTAYFTINGVSTADSGKYG-LVVKNKYGSETSDFTVSVFI 210 (212)
T ss_dssp TTTEEEEEESSCCGGGCEEEE-EEEEETTEEEEEEEEEEEEC
T ss_pred CCCEEEEEEcCcchHHCeEEE-EEEEcCCCcEEEEEEEEEEc
Confidence 445679999999999999999 99999999999888888875
No 213
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Probab=99.81 E-value=3.7e-19 Score=184.19 Aligned_cols=180 Identities=16% Similarity=0.242 Sum_probs=129.9
Q ss_pred eecccceEEeCCCcEEEEEECCCCCC-----CCeEEEEeCCEEeec-------------CCCceEEEecC------cEEE
Q psy574 9 RVQPKSQRVAAGDTALLECGPPRGHP-----EPTLVWKKNGHPIDF-------------ENSKRLRLVDG------TNLA 64 (977)
Q Consensus 9 ~~~p~~~~v~~G~~v~L~C~~~~g~P-----~~~v~W~k~g~~l~~-------------~~~~r~~~~~~------g~L~ 64 (977)
...+..+.+.+|++++|.|.+ .+.| ...|.|+|++..+.. ...+|..+..+ .+|.
T Consensus 5 ~~p~~~v~~~~G~~v~L~C~~-~~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~ 83 (222)
T 3sbw_C 5 TVPKDLYVVEYGSNMTIECKF-PVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQ 83 (222)
T ss_dssp BCSCSEEEEETTSCEEEEEEC-CCCSSCCTTTCEEEEEETTEEEEEEETTEECSSSSCGGGSSSEEECHHHHTTTEEEEE
T ss_pred ecCCccEEEEcCCcEEEEeEe-cCCCCCCCccEEEEEEECCcEEEEEeCCccccccccccccCceEEccccccCCEEEEE
Confidence 345667899999999999998 5555 348999998754421 11356666533 4799
Q ss_pred EcCCCCCCCeEEEEEEEecCceeeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEEC-CeeCCCC
Q psy574 65 IQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRL-GSAMPED 143 (977)
Q Consensus 65 I~~v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~-~~~l~~~ 143 (977)
|.+++.+|+|.|+|.+.+ .+. ....+.|.|..+|..........+.+|+.+.|.|.+.|.|.+.|.|+++ +..+...
T Consensus 84 I~~v~~~D~G~Y~C~~~~-~~~-~~~~~~l~V~~~~~~~~~~~~~~~~~g~~v~L~C~~~g~P~p~i~W~~~~g~~~~~~ 161 (222)
T 3sbw_C 84 ITDVKLQDAGVYRCMISY-GGA-DYKRITVKVNAPYNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGK 161 (222)
T ss_dssp ESSCCGGGCEEEEEEEES-SSE-EEEEEEEEEEBCCCCCEEEEEEEETTTTEEEEEEEEEEBSCCEEEEEETTCCEECCE
T ss_pred EcCcccccCeEEEEEEEe-CCC-ceeEEEEEEECCCCCCCceeeeeecCCCcEEEEEEecCCCCCeEEEEECCCceecCc
Confidence 999999999999999998 443 4567889998776544333333678999999999999999999999999 5555432
Q ss_pred ceE-Ee--ccceEEE---ccCccCCCeEEEEEEEeCCeeEEEEEEEEEeeCCeE
Q psy574 144 RMS-VL--PSRSLQL---SDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIV 191 (977)
Q Consensus 144 ~~~-~~--~~~~L~I---~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~~~p~~ 191 (977)
... .. .++.+.+ ..+..+|.|.|+|.|.|..|.....+.|.|..+|..
T Consensus 162 ~~~~~~~~~~~~~~~~~~l~v~~~d~g~Y~C~a~n~~g~~~~~~~l~v~~~p~~ 215 (222)
T 3sbw_C 162 TTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVIPELPLA 215 (222)
T ss_dssp EEEEECC----CEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECCCC---
T ss_pred cceEEEcCCCCCEEEEEEEEEeccCCcEEEEEEEeCccceeeEEEEEecCCccc
Confidence 211 11 2232222 245678999999999999999999999999876643
No 214
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Probab=99.80 E-value=5.4e-19 Score=184.00 Aligned_cols=188 Identities=26% Similarity=0.401 Sum_probs=147.5
Q ss_pred EcCCeEEeCC----CceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCc-----eEEeccceEEEccCccCCCeEEE
Q psy574 97 LVKPYIIRGP----KDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDR-----MSVLPSRSLQLSDVRLEDAGEYV 167 (977)
Q Consensus 97 ~~~P~~~~~p----~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~-----~~~~~~~~L~I~~v~~~D~G~Y~ 167 (977)
..+|.|...+ ....+.+|+++.|.|.+.|.|.+.+.|+|++..+.... ........|.|.+++.+|+|.|+
T Consensus 13 ~~~P~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 92 (231)
T 3ojm_B 13 KRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYT 92 (231)
T ss_dssp CEEEEESCGGGGCCSCEEEETTSCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEE
T ss_pred ccCCccccccccCceeEEEccCCCEEEEEecccCCCCeEEEEECCccccccccccceeeecCcceEEEecCCcccCEEEE
Confidence 3467776655 77889999999999999999999999999999875421 22224568999999999999999
Q ss_pred EEEEeCCeeEEEEEEEEEeeC----CeEEe-cCCCcEEeeCCeEEEEEEEecCCCCeEEEEE----cCeeeeecCCCccc
Q psy574 168 CEAENAVGKISASATLTVQMA----PIVRE-RPSDLRLEVGRDAVFLCGIEGSPPPSTFWML----EGNRSLIYPGDRVD 238 (977)
Q Consensus 168 C~a~n~~g~~~~~~~L~V~~~----p~~~~-~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~----~g~~~~~~~~~~~~ 238 (977)
|.+.|..+.....+.|.|... |.+.. .+....+.+|+.++|.|.+.+.|.+.+.|++ +|..+.... ..
T Consensus 93 C~~~n~~~~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~g~~~~~~~---~~ 169 (231)
T 3ojm_B 93 CVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDG---LP 169 (231)
T ss_dssp EEEEETTEEEEEEEEEEEECCCCCCCEECTTCSCCEEEETTCCEEEECCEECSSCCEEEEEEECCBTTBSBCTTS---CB
T ss_pred EEEecccCcccccEEEEEEcCCCCCCceeeccCCceEEEeCCcEEEEEEEecCCCCEEEEEECCCCCCccccCCC---cc
Confidence 999999999888899999853 23322 3567789999999999999999999999999 666543211 11
Q ss_pred cEEEEEc----cCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEECC
Q psy574 239 NIQAEIT----SDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGP 288 (977)
Q Consensus 239 ~~~~~~~----~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~~ 288 (977)
....... ......|.|.++..+|+|.|+ |.|.|..|.....+.|.|...
T Consensus 170 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~-C~a~n~~g~~~~~~~l~V~~~ 222 (231)
T 3ojm_B 170 YLKVLKHSGINSSNAEVLALFNVTEADAGEYI-CKVSNYIGQANQSAWLTVLPK 222 (231)
T ss_dssp CEEEEEECSTTCSCTTEEEECSCCGGGCEEEE-EEEEETTEEEEEEEEEEEECC
T ss_pred eEeEecccccccCCccEEEEecCCHHHCeEEE-EEEEeccceEeeEEEEEEecC
Confidence 1111111 012247999999999999999 999999999999999999884
No 215
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}
Probab=99.80 E-value=1.3e-18 Score=182.50 Aligned_cols=187 Identities=25% Similarity=0.400 Sum_probs=143.4
Q ss_pred cCCeEEeC----CCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCc-----eEEeccceEEEccCccCCCeEEEE
Q psy574 98 VKPYIIRG----PKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDR-----MSVLPSRSLQLSDVRLEDAGEYVC 168 (977)
Q Consensus 98 ~~P~~~~~----p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~-----~~~~~~~~L~I~~v~~~D~G~Y~C 168 (977)
.+|.|... +....+.+|+++.|.|.+.|.|.+.+.|+|++..+.... .......+|.|.+++.+|+|.|+|
T Consensus 10 ~~P~~~~p~~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C 89 (241)
T 3grw_A 10 GAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTC 89 (241)
T ss_dssp -CCEESSGGGGSCCEEEEETTSEEEEECCEECSSCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEE
T ss_pred CCceeEcCCCCCCcceEEcCCCeEEEEEEecCCCCceeEEEECCcccCCCCcccceeeeccceEEEEEeCCcccCEEEEE
Confidence 45666544 346789999999999999999999999999998875321 222355789999999999999999
Q ss_pred EEEeCCeeEEEEEEEEEee----CCeEE-ecCCCcEEeeCCeEEEEEEEecCCCCeEEEEE----cCeeeeecCCCcccc
Q psy574 169 EAENAVGKISASATLTVQM----APIVR-ERPSDLRLEVGRDAVFLCGIEGSPPPSTFWML----EGNRSLIYPGDRVDN 239 (977)
Q Consensus 169 ~a~n~~g~~~~~~~L~V~~----~p~~~-~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~----~g~~~~~~~~~~~~~ 239 (977)
.+.|..+.....+.|.|.. +|.+. ..+....+.+|+.++|.|.+.+.|.+.+.|++ ++..+.... ...
T Consensus 90 ~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~g~~v~L~C~~~~~p~p~v~W~~~~~~~g~~~~~~~---~~~ 166 (241)
T 3grw_A 90 VVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDG---TPY 166 (241)
T ss_dssp EEEETTEEEEEEEEEEEECCCCCCCEEEECTTCSEECCTTCCEEEEEEEECSSCCEEEEEEECCSSSCSSCTTT---CCC
T ss_pred EEeecCCceEEEEEEEEeccCCCCceeecCCCccceecCCCEEEEEEEEecCCCCEEEEEEcccCCCcccCCCC---cee
Confidence 9999999988889999874 23333 34667788999999999999999999999999 666543211 111
Q ss_pred EEEEE-----ccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEECC
Q psy574 240 IQAEI-----TSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGP 288 (977)
Q Consensus 240 ~~~~~-----~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~~ 288 (977)
..... ...+...|.|.++..+|+|.|+ |.|.|..|.....+.|.|..+
T Consensus 167 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~-C~a~N~~g~~~~~~~l~V~~~ 219 (241)
T 3grw_A 167 VTVLKSWISESVEADVRLRLANVSERDGGEYL-CRATNFIGVAEKAFWLSVHGP 219 (241)
T ss_dssp EEEEEEEECSBSEEEEEEEECSCCGGGCEEEE-EEEECSSCEEEEEEEEEC---
T ss_pred eeeeeEeeeeecCCceEEEECcCCcccCcEEE-EEEecCcceEEEEEEEEecCC
Confidence 11110 0012358999999999999999 999999999999999999884
No 216
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*
Probab=99.80 E-value=2.7e-19 Score=182.59 Aligned_cols=167 Identities=13% Similarity=0.221 Sum_probs=136.1
Q ss_pred cCCeEEeCCCceEEeCCCeEEEEEEecccCceE-EEEEECCeeCCCCceEEeccceEEEccCccCCCeEEEEEEEeCCee
Q psy574 98 VKPYIIRGPKDTTVSASSIIVFECSVGGDAVLT-VHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGK 176 (977)
Q Consensus 98 ~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~-i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~ 176 (977)
.+|.+...|.+..+.+|+++.|.|.+.+.|.+. +.|+|++..+... ...|.|.+++.+|+|.|+|.+.|. .
T Consensus 6 p~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~v~W~k~g~~l~~~------~~~L~i~~v~~~D~G~Y~C~a~n~--~ 77 (204)
T 3sgj_C 6 PKAVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQ------ASSYFIDAATVDDSGEYRCQTQLS--T 77 (204)
T ss_dssp CBCEEEEESCCSEEETTCCEEEEEECCSSSSCCCEEEEETTEEESCC------SSEEEESSCCGGGCEEEEEEETTS--B
T ss_pred CCCeEEEcCCCeEEECCCCEEEEEcCCCCCCCcEEEEEECCEEcccC------ccEEEEecccccCCEEEEEEeCCC--c
Confidence 456777788878999999999999999888775 9999999988754 378999999999999999999874 4
Q ss_pred EEEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEEecC-CCCeEEEEEcCeeeeecCCCccccEEEEEccCCceEEEEe
Q psy574 177 ISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGS-PPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQ 255 (977)
Q Consensus 177 ~~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g~-p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~s~L~I~ 255 (977)
.+..+.|.|..+|.+...+. ..+.+|+.++|.|.+.+. |.+.+.|+++|..+... . ....|.|.
T Consensus 78 ~s~~~~l~V~~~p~~~~~~~-~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~~-----------~---~~~~L~i~ 142 (204)
T 3sgj_C 78 LSDPVQLEVHIGWLLLQAPR-WVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYF-----------H---HNSDFYIP 142 (204)
T ss_dssp CCCCEEEEEECSSEEEECSC-SEEETTCCEEEEEEEGGGCCCEEEEEEETTEEEEEE-----------E---ECCCEEES
T ss_pred ccccEEEEEecCceEecCCc-eeEeCCCcEEEEEEecCCCCCceEEEEECCcEeecc-----------c---CCceEEEC
Confidence 45677888988887766655 788899999999999665 56789999999875321 0 12389999
Q ss_pred ecccCCCCeEEEEEEEcC-CCceeEEEEEEEECC
Q psy574 256 NVSRTAAPLIILCLGVNA-AGSDLARASLTVSGP 288 (977)
Q Consensus 256 ~v~~~d~G~Y~~C~a~n~-~g~~~~~~~l~V~~~ 288 (977)
+++.+|+|.|+ |.|.|. .+..+..+.|.|...
T Consensus 143 ~v~~~D~G~Y~-C~a~n~~~~~~s~~~~l~V~~~ 175 (204)
T 3sgj_C 143 KATLKDSGSYF-CRGLVGSKNVSSETVQITITQG 175 (204)
T ss_dssp SCCGGGCEEEE-EEEEETTEEEECCCEEEEEEC-
T ss_pred cCCcccCEEEE-EEEEeCCCceecCcEEEEEeCc
Confidence 99999999999 999994 445566678888874
No 217
>2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor complex LIFR LIF, cytokine RE cytokine complex; HET: NAG FUC MAN; 4.00A {Mus musculus}
Probab=99.80 E-value=2.5e-18 Score=196.48 Aligned_cols=365 Identities=13% Similarity=0.059 Sum_probs=223.4
Q ss_pred cCceEEEeccCCCCCeEEEEEEEcCCCceEEEEEEEEECCCCCCCcccCCCCCCCCCCCCCCCeEEee-CCCceEEEEEc
Q psy574 342 GDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQ-TANGLTLAWSR 420 (977)
Q Consensus 342 ~~~sl~I~~v~~~d~G~Y~C~a~n~~G~~~~s~~l~v~~~~~~~~~~~~~~~~~~~p~~P~~~~v~~~-~~~sv~lsW~~ 420 (977)
+...+.|..+.+.|. .++..- ..+. ...+.+.+.. .+.+|.+|.++.+... ....+.|+|..
T Consensus 51 ~~~~~~~~~~~~~~~-~~~~~~--~~~~---~~~~~~~~~~-----------~~~~p~~p~~l~~~~~~~~~~l~~~W~~ 113 (488)
T 2q7n_A 51 ETTNVKIPALSPGDH-EVTINY--LNGF---QSKFTLNEKD-----------VSLIPETPEILDLSADFFTSSLLLKWND 113 (488)
T ss_dssp SSSEEEEECCCSSCE-EEEEEE--SSSC---EEEEEECSTT-----------CEECCCCCCEEECCEETTTTEEEEEECB
T ss_pred ccceeEcccCCCCcc-eEEEee--ccCc---eeEEEEecCc-----------cccCCCCCeeEEEEEecCCCeEEEEEeC
Confidence 445678888887773 555442 2222 3334443221 1246999999877655 46789999987
Q ss_pred CCCC-CCcccceEEEEEeecCCCCCCCCCCCCcccEEEec-eecCc----CeEEEEccCC--CCeEEEEEEEEc----CC
Q psy574 421 NNQI-GSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVA-TNVPS----PILTVTNLTV--GLTYTFLVRALN----SH 488 (977)
Q Consensus 421 p~~~-~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~-~~~~~----~~~~i~~L~p--~t~Y~~~V~a~n----~~ 488 (977)
+... .......|.|++....... ..|.... ..... .+.....+.| .+.|.++||+.. -.
T Consensus 114 ~~~~~~~~~~~~~~i~v~~~~~~~---------~~~~~~~~~~~~~~~~~~~w~w~s~~pl~c~~~~v~iR~~~~~~~~~ 184 (488)
T 2q7n_A 114 RGSALPHPSNATWEIKVLQNPRTE---------PVALVLLNTMLSGKDTVQHWNWTSDLPLQCATHSVSIRWHIDSPHFS 184 (488)
T ss_dssp CGGGSCSSEEEEEEEECCCSSSSC---------SCCCEECCEECSSSCBCCEEEEECSSCCSSSCCEEEEEEEECCTTCC
T ss_pred CCccccccCCeEEEEEEEEeccce---------EEEEEEEEEEecCCCceeEeeccCCCcccccceEEEEEEEecccccc
Confidence 7651 1222467998875432221 0122211 11222 2344444443 569999999996 45
Q ss_pred CCCCCCCCCceEEeeccc---cccccccCC----c-----------ce-ee-c----CCCC-CCC-cc-hHHHH------
Q psy574 489 GLSAPSPLSDEIVLRGTF---SEGIFSEGG----K-----------GI-FS-E----NFPD-EGR-GE-SLRRA------ 535 (977)
Q Consensus 489 G~s~~S~~s~~~~~~~~~---p~~~p~~~~----~-----------~~-~~-~----~P~~-~~~-g~-~~~~~------ 535 (977)
|.+.+|.+|......... ....|.... . .| |. + +..+ .+. +. -...+
T Consensus 185 ~~~~ws~Ws~~~~~~~~~~t~i~v~P~~~~v~~Gs~vtl~C~a~~~~I~W~~ng~~i~~~ri~~~~~~L~I~nl~~sd~g 264 (488)
T 2q7n_A 185 GYKEWSDWSPLKNISWIRNTETNVFPQDKVVLAGSNMTICCMSPTKVLSGQIGNTLRPLIHLYGQTVAIHILNIPVSENS 264 (488)
T ss_dssp SCBCCCCCCCCEECCCCCCSSCCEECTTCEEESSCCCEEEECCSSCEEEEEETTEECCCEECSSSCEEEECCSCCCCCSS
T ss_pred CCCCCcCCCChhhcCCcCCCceEECCCCCEEcCCCCEEEEEECCCCEEEEEECCEECchhhccceEEEEEEeCCCcccCC
Confidence 666677777666552211 111222110 0 00 00 0 0000 000 00 00000
Q ss_pred -------------hhc-ccccCCceEEEEEeeEeCCCeEEEEEEec-CC----CccceEEEEEEecCCCCCceEEEEeec
Q psy574 536 -------------RQH-LQEGGGSLIELTEVKPMTSTSVKLTWEIL-NT----DYIEGVYIYSRGLDPPASVAMLTVLHA 596 (977)
Q Consensus 536 -------------~~~-l~~~~~~~~~~l~~~~~~~tsv~lsW~~p-~~----~~i~~Y~v~y~~~~~~~~~~~~~~~~~ 596 (977)
... ..+.++.++.++.+...+.++++|+|+++ .. ..+..|.|+|+..+....|...... .
T Consensus 265 ~y~~~C~~~~~i~~~~l~v~~pP~~P~nl~C~~~~~~svtcsW~pg~~~~l~G~~~t~Y~L~y~~~g~~~~c~~~~~~-~ 343 (488)
T 2q7n_A 265 GTNIIFITDDDVYGTVVFAGYPPDVPQKLSCETHDLKEIICSWNPGRITGLVGPRNTEYTLFESISGKSAVFHRIEGL-T 343 (488)
T ss_dssp CEEEEEEESSCEEEEEEEEECCCCCCCSCEEEBSSSSEEEEEECCCSCCCCCTTSSCEEEEEETTTCCEEEEECSSCC-C
T ss_pred cEEEEEEcCCeEEEEEEEeeCCCCCCcccEEEEcCCCEEEEEEeCCCcCCCCCCCceeEEEEEEECCCCCCCcccccc-C
Confidence 000 01134555778888888999999999998 22 3578999999876532222111110 1
Q ss_pred CccceEEECCCCCCcEEEEEEEEeecceeCCCCCceEEeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeE
Q psy574 597 GEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRT 676 (977)
Q Consensus 597 ~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~g~~s~~~~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~ 676 (977)
+....+.+..+..++.|.|+|.|.|..|.++ + .+.+.+.+.+++.||.++++...+.+++.|+|++| ...+|.++.
T Consensus 344 ~~~~~ct~~l~~~~t~Y~f~V~A~N~~G~~~-S-~~~~~~~~~v~P~PP~nl~v~~~s~~sl~LsW~pP--~~~~g~~l~ 419 (488)
T 2q7n_A 344 NETYRLGVQMHPGQEIHNFTLTGRNPLGQAQ-S-AVVINVTERVAPHDPTSLKVKDINSTVVTFSWYLP--GNFTKINLL 419 (488)
T ss_dssp SSCEEEEEECCSSCCCCEEEEEEEETTEEEE-E-EEECCGGGTBCCCCCEEEEEEECSTTCEEEEEEEE--EECSSSEEE
T ss_pred CceEEEEEcCCCCccEEEEEEEEEeCCCCcc-c-eEEEEecCCCCCCCCeEEEEEecCCCEEEEEEeCC--CCCCCcceE
Confidence 3345677765555699999999999999854 4 57777777777779999999888889999999999 455789999
Q ss_pred EEEEEEecCCcce-EEEEecC-CcCeE--EecCCCCCceEEEEEEEEcCCCc---CCCCCceEEeecCC
Q psy574 677 YQIIVGGGNNSAL-INMTVSA-STPTL--LLTNLSAGIRYSVSLAATNRAGT---GPYSRPALLSLTSG 738 (977)
Q Consensus 677 Y~v~~~~~~~~~~-~~~~~~~-~~~~~--~l~~L~p~t~Y~~~V~A~~~~G~---g~~S~~~~~~t~~~ 738 (977)
|+|+|+..+...+ ....+.. ..+.+ .|.+|+|++.|.|+|||.+ .|. |+||+++.++|.+.
T Consensus 420 YeV~Yr~~~~~~w~~~~~~~~~~~~~~~v~l~~L~P~T~Y~~rVRA~~-~g~G~WS~WS~~v~~~T~e~ 487 (488)
T 2q7n_A 420 CQIEICKANSKKEVRNATIRGAEDSTYHVAVDKLNPYTAYTFRVRCSS-KTFWKWSRWSDEKRHLTTEA 487 (488)
T ss_dssp EEEEEBCTTSCCEEEEEEEECCEEEEEEEEECSCCSSCCBBCCEEEEE-SSCSSCCCCCCCCCBCCCCC
T ss_pred EEEEEEECCCCCceEEEEEecCCCcEEEEEeCCCCCCceEEEEEEEEE-CCCCCCCCCcCCEeEECCCC
Confidence 9999998664333 2233322 23445 9999999999999999999 887 58999888888653
No 218
>1bqu_A Protein (GP130); cytokine receptor, glycoprotein 130, interleukine 6 R beta subunit, signaling protein; 2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1pvh_A 1bj8_A
Probab=99.80 E-value=3.1e-19 Score=183.99 Aligned_cols=198 Identities=17% Similarity=0.078 Sum_probs=148.3
Q ss_pred CCCCCCCCCeEEeeCCCceEEEEEcCCCCCCcccceEEEEEeecCCCCCCCCCCCCcccEEEeceecCcCeEEEEcc-CC
Q psy574 396 TYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNL-TV 474 (977)
Q Consensus 396 ~~p~~P~~~~v~~~~~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~i~~L-~p 474 (977)
.+|++|.++.+...+.+++.|+|.++...+ ...+|.|+|+..... .+.+........++++.+| .+
T Consensus 6 ~pP~~P~~l~~~~~~~~sv~l~W~~p~~~~--~~~~Y~v~~~~~~~~-----------~~~~~~~~~~~~~~~i~~L~~~ 72 (215)
T 1bqu_A 6 LPPEKPKNLSCIVNEGKKMRCEWDGGRETH--LETNFTLKSEWATHK-----------FADCKAKRDTPTSCTVDYSTVY 72 (215)
T ss_dssp CCCCCCEEEEEEEETTSCCEEEEECCSCCS--SCCEEEEEEEETTEE-----------CCCEECCSSCTTEEECSSCCCT
T ss_pred CCCCCCEeeEeEECCCCcEEEEcCCCCCCC--CCceEEEEEEEcCCC-----------ccccccccCCcceEEEcCCccc
Confidence 568999999999988899999999998732 347999999865322 2222233455688999999 99
Q ss_pred CCeEEEEEEEEcCCCCCCCCCCCceEEeeccccccccccCCcceeecCCCCCCCcchHHHHhhcccccCCceEEEEEeeE
Q psy574 475 GLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKP 554 (977)
Q Consensus 475 ~t~Y~~~V~a~n~~G~s~~S~~s~~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~g~~~~~~~~~l~~~~~~~~~~l~~~~ 554 (977)
++.|.|+|+|.|..|.+..+. ..+.+ .....|. | +.++++..
T Consensus 73 ~t~Y~~~V~A~n~~G~~~s~~--~~~~~---~~~~~p~---------p------------------------P~~~~~~~ 114 (215)
T 1bqu_A 73 FVNIEVWVEAENALGKVTSDH--INFDP---VYKVKPN---------P------------------------PHNLSVIN 114 (215)
T ss_dssp TSCEEEEEEEEETTEEEECCC--EEECG---GGSEECC---------C------------------------CEEEEEEC
T ss_pred cccEEEEEEEEecccCccCCc--EEecc---cccCcCC---------C------------------------CCceEEEE
Confidence 999999999999999875221 11111 1101111 2 35677766
Q ss_pred e--CCCeEEEEEEec--CCCccceEEEEEEecCCCCCceEEEEe-ecCccceEEECCCCCCcEEEEEEEEeecceeCC--
Q psy574 555 M--TSTSVKLTWEIL--NTDYIEGVYIYSRGLDPPASVAMLTVL-HAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGK-- 627 (977)
Q Consensus 555 ~--~~tsv~lsW~~p--~~~~i~~Y~v~y~~~~~~~~~~~~~~~-~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~g~-- 627 (977)
. ++++|.|+|++| .++.+.+|.|+|+..+ ...|...... .....++++|.+|+|++.|.|+|+|.|..|.|.
T Consensus 115 ~~~~~~sv~l~W~~p~~~~~~i~~Y~v~y~~~~-~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~g~g~~S 193 (215)
T 1bqu_A 115 SEELSSILKLTWTNPSIKSVIILKYNIQYRTKD-ASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWS 193 (215)
T ss_dssp C--CCSCEEEEEECCGGGGTSCEEEEEEEEETT-CSSCEECCGGGGCSCCSEEEECSCCSSEEEEEEEEEEETTSCSCCC
T ss_pred ecCCCceEEEEEeCCCCCCcceEEEEEEEccCC-CCCceEeccccccCccceEEeCCCCCCCEEEEEEEEccCCCCCccC
Confidence 5 789999999998 5677999999999987 4567654321 135678999999999999999999999998866
Q ss_pred -CCCceEEeccCCCCCCCC
Q psy574 628 -PSNLRAVRTLECEPSGVP 645 (977)
Q Consensus 628 -~s~~~~~~T~~~~P~~~P 645 (977)
+|..+.++|.+++|..+|
T Consensus 194 ~~S~~~~~~T~~~~P~~~p 212 (215)
T 1bqu_A 194 DWSEEASGITYEDRPSKEP 212 (215)
T ss_dssp CCCCCEEEEECCCHHHHHH
T ss_pred CCCCcccccccccCCcCCC
Confidence 566788999999887655
No 219
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*
Probab=99.80 E-value=4.7e-19 Score=182.75 Aligned_cols=185 Identities=25% Similarity=0.418 Sum_probs=146.7
Q ss_pred cCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCC---ceE-EeccceE----EEccCccCCCeEEEEE
Q psy574 98 VKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED---RMS-VLPSRSL----QLSDVRLEDAGEYVCE 169 (977)
Q Consensus 98 ~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~---~~~-~~~~~~L----~I~~v~~~D~G~Y~C~ 169 (977)
.+|.+...|.+..+.+|+++.|.|.+.|.|.+.|.|+|++..+... ... ...++.+ .|.+++.+|+|.|+|.
T Consensus 8 ~~P~i~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~ 87 (217)
T 2vr9_A 8 QSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCV 87 (217)
T ss_dssp CCCEEEECCCCEEECTTSCEEECCEEECSSCCEEEEEETTEECCCSSSSSSEEECTTSCEEESSCCBSSSCBCCEEEEEE
T ss_pred CCCEEecCCCceEEeCCCcEEEEEEcCCCCCCeEEEEECCcCccCCCccceeEEecCCceEEEEEeccCCcccCceEEEE
Confidence 5788999999999999999999999999999999999999988653 222 2234444 6888999999999999
Q ss_pred EEeCCeeE-EEEEEEEEee-CCeEEecCCCcEEeeCCeEEEEEEE-ecCCCCeEEEEEcCeeeeecCCC---ccccEEEE
Q psy574 170 AENAVGKI-SASATLTVQM-APIVRERPSDLRLEVGRDAVFLCGI-EGSPPPSTFWMLEGNRSLIYPGD---RVDNIQAE 243 (977)
Q Consensus 170 a~n~~g~~-~~~~~L~V~~-~p~~~~~p~~~~v~~G~~v~L~C~~-~g~p~~~i~W~~~g~~~~~~~~~---~~~~~~~~ 243 (977)
+.|..|.. +..+.|.|.. +|.+...+....+.+|+.++|.|.+ .+.|.+.+.|++++..+...... ...++...
T Consensus 88 ~~n~~g~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~ 167 (217)
T 2vr9_A 88 AKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIV 167 (217)
T ss_dssp EEETTEEEECCCEEEEECEECCSCSBCCCCEEECTTSCEEECCBCCCEESCCEEEEEETTEEECCCCCC---CCCSEEEE
T ss_pred EecCCCccccccceEEEEEeCCCcEECCCccEEcCCCeEEEEEECCCCCCCCeEEEEECCcCCCcccccccccCCcEEec
Confidence 99998875 3467777774 6667777888889999999999999 89999999999999877422110 12333333
Q ss_pred EccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEEC
Q psy574 244 ITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSG 287 (977)
Q Consensus 244 ~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~ 287 (977)
. .+ .|.|.++..+|+|.|+ |.|.|..|....+..+.+..
T Consensus 168 ~--~~--~L~i~~~~~~d~G~Y~-C~a~N~~G~~~~~~~~lv~~ 206 (217)
T 2vr9_A 168 D--GG--NLLISNVEPIDEGNYK-CIAQNLVGTRESSYAKLIVQ 206 (217)
T ss_dssp T--TT--EEEESSCCSTTCEEEE-EEEEETTEEEECCCEEEEEC
T ss_pred C--CC--cEEEeeCCHHHCeEEE-EEEEcccceeccccEEEEEE
Confidence 2 34 8999999999999999 99999999887665554444
No 220
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A
Probab=99.80 E-value=5.3e-18 Score=186.64 Aligned_cols=278 Identities=19% Similarity=0.180 Sum_probs=178.5
Q ss_pred EEeCCCceEEeCCCeEEEEEEecccC-ceEEEEEECCeeCCCCce-EEeccceEEEccCccCCCeEEEEEEEeCCeeEEE
Q psy574 102 IIRGPKDTTVSASSIIVFECSVGGDA-VLTVHWKRLGSAMPEDRM-SVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISA 179 (977)
Q Consensus 102 ~~~~p~~~~v~~G~~v~l~C~v~g~p-~~~i~W~k~~~~l~~~~~-~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~ 179 (977)
+..++..+.+..|++++|.|.+.+.+ .+.|.|++++..+..... ....++.|.|.+++..|+|.|+|.+ .|...+
T Consensus 9 ~~~p~~~v~~~~G~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~---~g~~~~ 85 (325)
T 1n26_A 9 QEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLLLRSVQLHDSGNYSCYR---AGRPAG 85 (325)
T ss_dssp CCCCTTEEEECTTCCEEEECTTSCTTCCSEEEEEEECSSSSCCCEEEEEESSEEEECSCCGGGCEEEEEES---SSSCSC
T ss_pred cccCCCcEECCCCCcEEEEeCCCCCCCCceEEEEECCccCCccccccccccceEEecccchhhCeEeEEEe---CCEEee
Confidence 33444444557999999999987654 789999999877643222 2235688999999999999999993 567777
Q ss_pred EEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEEecCC-CCeEEEEEcCeeeeecCCCccccEEEEEccCCceEEEEeecc
Q psy574 180 SATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSP-PPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVS 258 (977)
Q Consensus 180 ~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p-~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~s~L~I~~v~ 258 (977)
.+.|.|..+|.. | . |.|.+.+.. ...+.|....... ....| .|......
T Consensus 86 ~~~L~V~~pP~~---P----------~-l~c~~~~~~~~~~c~W~~~~~~~------~~~~y----------~l~~~~~~ 135 (325)
T 1n26_A 86 TVHLLVDVPPEE---P----------Q-LSCFRKSPLSNVVCEWGPRSTPS------LTTKA----------VLLVRKFQ 135 (325)
T ss_dssp EEEEEECCCCCC---C----------C-CEEEBSSTTSCEEEEECCSSCCC------TTCEE----------EEEEEEES
T ss_pred eEEEEeccCCCC---C----------c-eeEEeecCCCcEEEEECCCCCCC------CCceE----------EEEEEEcc
Confidence 899999876641 1 1 566644322 2345565322110 00111 11111000
Q ss_pred cCCCCeEEEEEEEcCCCceeEEEEEEEECCCCCCCCeEEeCCCceeecCCCcEEEEEEEccCceEEEEECCEEcCCCCcE
Q psy574 259 RTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRGEGSVQWWRGEREVGSGPRV 338 (977)
Q Consensus 259 ~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~~~~~~pp~i~~~p~~~~v~~g~~~~L~C~~~~~p~i~W~~~g~~l~~~~~~ 338 (977)
..+.+.+ ...|.... .
T Consensus 136 ~~~~~~~----------------------------------------------~~~c~~~~--------------~---- 151 (325)
T 1n26_A 136 NSPAEDF----------------------------------------------QEPCQYSQ--------------E---- 151 (325)
T ss_dssp SSSCEEE----------------------------------------------EEEEEEET--------------T----
T ss_pred CCCCCcc----------------------------------------------cccCCCCC--------------C----
Confidence 0000000 01111000 0
Q ss_pred EEecCceEEEeccC-CCCCeEEEEEEEcCCCceEEEEEEEEECCCCCCCcccCCCCCCCCCCCCCCCeEEeeCC--CceE
Q psy574 339 NVTGDGSLVLTDVT-KEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTA--NGLT 415 (977)
Q Consensus 339 ~~~~~~sl~I~~v~-~~d~G~Y~C~a~n~~G~~~~s~~l~v~~~~~~~~~~~~~~~~~~~p~~P~~~~v~~~~~--~sv~ 415 (977)
....++.|..+. ....+.|+|.|.|..|.... ..+.+.. .....|+||.++.+...+. +++.
T Consensus 152 --~~~~~c~i~~~~~~~~~Y~f~v~A~N~~G~~~s-~~~~~~~------------~~~v~P~pP~~l~v~~~~~~~~sv~ 216 (325)
T 1n26_A 152 --SQKFSCQLAVPEGDSSFYIVSMCVASSVGSKFS-KTQTFQG------------CGILQPDPPANITVTAVARNPRWLS 216 (325)
T ss_dssp --TTEEEEEECCCTTCCCEEEEEEEEEETTEEEEC-CCEEEET------------TTCBCCCCCEEEEEEECTTCTTCEE
T ss_pred --CCCEEEEECCCcccCcEEEEEEEEEcCCCCccc-CcEEEee------------ccccCCCCCcceEEEEecCCCCEEE
Confidence 001123344333 34667899999999997632 1222221 1125689999998887754 5899
Q ss_pred EEEEcCCCC-CCcccceEEEEEeecCCCCCCCCCCCCcccEEEeceecCcCeEEEEccCCCCeEEEEEEEEcCCCCCCCC
Q psy574 416 LAWSRNNQI-GSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPS 494 (977)
Q Consensus 416 lsW~~p~~~-~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~G~s~~S 494 (977)
|+|.+|... .+..+.+|.|+|+..... .|..........+++|.+|.|++.|.|+|+|.|..|.|.+|
T Consensus 217 lsW~~p~~~~~~~~~~~Y~V~yr~~~~~-----------~W~~~~~~~~~~~~~l~~L~p~t~Y~~rVrA~n~~g~G~~S 285 (325)
T 1n26_A 217 VTWQDPHSWNSSFYRLRFELRYRAERSK-----------TFTTWMVKDLQHHCVIHDAWSGLRHVVQLRAQEEFGQGEWS 285 (325)
T ss_dssp EEEECCTTCCCSSSCEEEEEEEEETTCS-----------CCEEEECGGGCSEEEESSCCTTCCEEEEEEEEETTTBSCCC
T ss_pred EEECCCCccCCCcEeEEEEEEEEeCCCC-----------CCEEEcccCCceEEEEeCCCCCCeEEEEEEEecCCCCCCCc
Confidence 999998762 455679999999886543 78876655567889999999999999999999999999999
Q ss_pred CCCceEEe
Q psy574 495 PLSDEIVL 502 (977)
Q Consensus 495 ~~s~~~~~ 502 (977)
.++..+..
T Consensus 286 ~wS~~~~~ 293 (325)
T 1n26_A 286 EWSPEAMG 293 (325)
T ss_dssp CCCCCEEE
T ss_pred CCCCccce
Confidence 99998876
No 221
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}
Probab=99.80 E-value=1.2e-18 Score=175.99 Aligned_cols=162 Identities=22% Similarity=0.357 Sum_probs=122.1
Q ss_pred ecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEee---cC----------C---CceEEEecCcEEEEcCCCCCCC
Q psy574 10 VQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPID---FE----------N---SKRLRLVDGTNLAIQDSRKTDD 73 (977)
Q Consensus 10 ~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~---~~----------~---~~r~~~~~~g~L~I~~v~~~D~ 73 (977)
-.|..+.+.+|++|+|.|.+..+.+.+.|.|+|+|..+. .. . .+|+.+..+++|+|.+++.+|+
T Consensus 3 ~~p~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~ 82 (193)
T 2if7_A 3 LTPLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQLSNLKMEDT 82 (193)
T ss_dssp CCCEEEEEETTSCEEECCCCCCCSCCCEEEEEETTEEEEEEECCSSSCCEEEECCHHHHTTEEECTTCCEEECSCCGGGC
T ss_pred CCCeEEEEEecCeEEEeccCCCcccccEEEEEECCEEEEEEecccCCCCceeecCccccccEEECCCeEEEECCCCcccC
Confidence 357789999999999999984345667999999987552 10 0 1377777788999999999999
Q ss_pred eEEEEEEEecCceeeeEeEEEEEEcCC---eEEeCCCceEEeCCC-eEEEEEEeccc-CceEEEEEECCeeCCCCceEEe
Q psy574 74 GRYQCVVKNVAGTRESTDAVLRVLVKP---YIIRGPKDTTVSASS-IIVFECSVGGD-AVLTVHWKRLGSAMPEDRMSVL 148 (977)
Q Consensus 74 G~Y~C~a~n~~g~~~s~~~~l~V~~~P---~~~~~p~~~~v~~G~-~v~l~C~v~g~-p~~~i~W~k~~~~l~~~~~~~~ 148 (977)
|.|+|.+.+..+... ..+.|.|..++ .+...+ ..+..|. +++|.|.+.|. |.+.|.|+|++..+.
T Consensus 83 G~Y~C~~~~~~~~~~-~~~~L~V~~~~~~p~i~~~~--~~~~~g~~~v~L~C~~~g~~p~p~i~W~~~g~~l~------- 152 (193)
T 2if7_A 83 GSYRAQISTKTSAKL-SSYTLRILRQLRNIQVTNHS--QLFQNMTCELHLTCSVEDADDNVSFRWEALGNTLS------- 152 (193)
T ss_dssp EEEEEEEECSSCEEE-EEEEEEEECCCEEEEEEECC--C---CSSEEEEEEEEEESCCTTCEEEEEETTEEEE-------
T ss_pred ceEEEEEEecCCCeE-EEEEEEEEccCCCCeEecCc--eeecCCCceEEEEEEEecCCCceEEEEEeCCEEcC-------
Confidence 999999999877643 47788888664 333333 2234465 89999999874 589999999987653
Q ss_pred ccceEEEccCccC-CCeEEEEEEEeCCeeEEEEE
Q psy574 149 PSRSLQLSDVRLE-DAGEYVCEAENAVGKISASA 181 (977)
Q Consensus 149 ~~~~L~I~~v~~~-D~G~Y~C~a~n~~g~~~~~~ 181 (977)
.+..|.|.....+ |+|.|+|.|.|..|..+..+
T Consensus 153 ~~~~l~i~~~~~~~d~G~Y~C~a~N~~g~~s~~~ 186 (193)
T 2if7_A 153 SQPNLTVSWDPRISSEQDYTCIAENAVSNLSFSV 186 (193)
T ss_dssp SSSEEEEEECTTTCSCCEEEEEEEETTEEEEEEE
T ss_pred CCCeEEEEeccCcCCCCcEEEEEECCCCcccccc
Confidence 3455777655554 89999999999999875543
No 222
>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...
Probab=99.80 E-value=2.2e-19 Score=184.61 Aligned_cols=169 Identities=20% Similarity=0.222 Sum_probs=128.8
Q ss_pred cceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCC--EEe----------ecCCCceEEEecC---cEEEEcCCCCC
Q psy574 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNG--HPI----------DFENSKRLRLVDG---TNLAIQDSRKT 71 (977)
Q Consensus 7 ~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g--~~l----------~~~~~~r~~~~~~---g~L~I~~v~~~ 71 (977)
.+...|..+.+.+|++++|.|.+ .+.|.+.|.|+|++ ..+ ......|+.+..+ .+|.|.+++.+
T Consensus 3 ~v~~~p~~~~v~~G~~v~L~C~~-~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~ 81 (213)
T 3d9a_L 3 VLTQSPATLSVTPGNSVSLSCRA-SQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETE 81 (213)
T ss_dssp CEEEECSEEEECTTCCEEEEEEE-SSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGG
T ss_pred eEEeCCccEEEeCCCcEEEEEEC-CCCCCCCEEEEEeCCCCCcEEEEEEcccccccccccEEEEcCCCEEEEEECCCChh
Confidence 35566889999999999999999 78888899999843 211 1122356666533 37999999999
Q ss_pred CCeEEEEEEEecCceeeeEeEEEEEEc---CCeEEeCCCceEEeCCCeEEEEEEecc-cCce-EEEEEECCeeCCCC-ce
Q psy574 72 DDGRYQCVVKNVAGTRESTDAVLRVLV---KPYIIRGPKDTTVSASSIIVFECSVGG-DAVL-TVHWKRLGSAMPED-RM 145 (977)
Q Consensus 72 D~G~Y~C~a~n~~g~~~s~~~~l~V~~---~P~~~~~p~~~~v~~G~~v~l~C~v~g-~p~~-~i~W~k~~~~l~~~-~~ 145 (977)
|+|.|+|.+.|..+......+.|.|.. +|.+...+....+.+|+.++|.|.+.| .|.+ .+.|+|++..+... ..
T Consensus 82 D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~ 161 (213)
T 3d9a_L 82 DFGMYFCQQSNSWPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLN 161 (213)
T ss_dssp GCEEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEE
T ss_pred hCEEEEEeeecCCcceeCCCEEEEEecCCCCceeEeECCChhhcCCCcEEEEEEEeeecCCceEEEEEcCCCcCcceeee
Confidence 999999999998775555556788875 677766554444558999999999977 5665 89999999988765 21
Q ss_pred EEe----------ccceEEEccCccCCCeEEEEEEEeCCee
Q psy574 146 SVL----------PSRSLQLSDVRLEDAGEYVCEAENAVGK 176 (977)
Q Consensus 146 ~~~----------~~~~L~I~~v~~~D~G~Y~C~a~n~~g~ 176 (977)
... ....|.|.++..+|+|.|+|.|.|....
T Consensus 162 ~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~ 202 (213)
T 3d9a_L 162 SWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST 202 (213)
T ss_dssp EECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCS
T ss_pred cCCCccCCCCCEEEEEEEEEeccccCCCCEEEEEEEEccCC
Confidence 111 1238999999999999999999998654
No 223
>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine, ligand-receptor complex, signaling protein-cytokin; HET: NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1
Probab=99.80 E-value=2.5e-18 Score=188.31 Aligned_cols=188 Identities=12% Similarity=0.041 Sum_probs=139.0
Q ss_pred EEEEEeeEeC-CCeEEEEEEec-CCCccceEEEEEEecCCC-----CCceEEEEeecCccceEEEC--CCCCCcEEEEEE
Q psy574 547 IELTEVKPMT-STSVKLTWEIL-NTDYIEGVYIYSRGLDPP-----ASVAMLTVLHAGEASGFLVT--GLAHYSRYEFFL 617 (977)
Q Consensus 547 ~~~l~~~~~~-~tsv~lsW~~p-~~~~i~~Y~v~y~~~~~~-----~~~~~~~~~~~~~~~~~~i~--~L~p~t~Y~~~V 617 (977)
+.++.+.... .++++|+|+++ .++....|.|+|+..... ..|..... .....++.|. +|.+++.|.|+|
T Consensus 102 P~~l~c~~~~~~~~~~~~W~~~~~~~~~~~Y~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~L~~~~~Y~f~V 179 (313)
T 2d9q_B 102 PHNLSCLMNLTTSSLICQWEPGPETHLPTSFTLKSFKSRGNCQTQGDSILDCVP--KDGQSHCSIPRKHLLLYQNMGIWV 179 (313)
T ss_dssp CEEEEEEEETTTTEEEEEEECCSCCSSCCEEEEEEEECCTTSCSCCCCEEEECC--CTTCSEEEEEGGGCCSSSCEEEEE
T ss_pred CccceeeECCCCccEEEEecCCCCCCCceeEEEEEEecCCCcccCCcccccCCC--CCCCcEEEECccccccceeEEEEE
Confidence 4788888884 78999999999 444456799999876532 12322221 1233556664 599999999999
Q ss_pred EEeecceeCCCCCceEEeccCCCCCCCCceeEEEEe------cCcEEEEEeeCCCCCCCCeeeeEEEEEEE-ecCCcceE
Q psy574 618 VPFFGSVDGKPSNLRAVRTLECEPSGVPQLTDPVLL------NATSVLLKWKPPPVGTHNGVIRTYQIIVG-GGNNSALI 690 (977)
Q Consensus 618 ~a~n~~g~g~~s~~~~~~T~~~~P~~~P~~v~~~~~------~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~-~~~~~~~~ 690 (977)
.|.|..|.+ .+..+.+.+.+.+++.||.++++... ..+++.|+|++|. ..++.+++|+|+|+ ..+...+.
T Consensus 180 ~A~N~~G~~-~s~~~~~~~~~~~~p~pP~~~~~~~~~~~~~~~~~~l~l~W~~p~--~~~~~~l~Y~v~y~~~~~~~~w~ 256 (313)
T 2d9q_B 180 QAENALGTS-MSPQLCLDPMDVVKLEPPMLRTMDPSPEAAPPQAGCLQLSWEPWQ--PGLHINQKCELRHKPQRGEASWA 256 (313)
T ss_dssp EEEETTEEE-ECCCEEECGGGGEECCCCEEEECCC-------CCSCEEEEEECCG--GGTTSCEEEEEEEEESSSCCCCE
T ss_pred EEECCCCCc-cCccEEEehhheeccCcCceeEEEEecccccCCCCeEEEEECCCC--CCCceeEEEEEEEccCCCCCCcE
Confidence 999999987 45557788877776679999988765 4588999999984 33445689999999 54433333
Q ss_pred E-EEecCCcCeEEecCCCCCceEEEEEEEEcCCCcCC---CCCceEEeecCCC
Q psy574 691 N-MTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGP---YSRPALLSLTSGP 739 (977)
Q Consensus 691 ~-~~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~~G~g~---~S~~~~~~t~~~~ 739 (977)
. .......+.+.|.+|+|++.|.|+|+|+|.+|.|. ||+++.++|.+..
T Consensus 257 ~~~~~~~~~~~~~l~~L~p~t~Y~~rVra~~~~g~G~wS~wS~~~~~~T~~~~ 309 (313)
T 2d9q_B 257 LVGPLPLEALQYELCGLLPATAYTLQIRCIRWPLPGHWSDWSPSLELRTTERA 309 (313)
T ss_dssp EEEEECSCEEEEEECSCCSCCCEEEEEEEEECSSCCCCCCCCCCEEECCCC--
T ss_pred EcccccCcceEEEEeCCCCCCeEEEEEEeeECCCCCccCCCCCccceeCCccC
Confidence 3 23345667899999999999999999999988875 7788888887654
No 224
>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.79 E-value=1.9e-19 Score=190.02 Aligned_cols=215 Identities=17% Similarity=0.148 Sum_probs=132.0
Q ss_pred ccccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCC-ceE-EEecCcEEEEcCCCCCCCeEEEEEEE
Q psy574 4 LREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENS-KRL-RLVDGTNLAIQDSRKTDDGRYQCVVK 81 (977)
Q Consensus 4 l~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~-~r~-~~~~~g~L~I~~v~~~D~G~Y~C~a~ 81 (977)
-+|.+...|. ..+.+|++|+|.|.+ . .+.+.|.|+|||+.+..... .+. ....++.|.|.+++.+|+|.|+|.+.
T Consensus 6 ~kP~i~~~P~-~~V~~G~~VtL~C~~-~-~~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~ 82 (257)
T 1b6u_A 6 RKPSLLAHPG-PLVKSEETVILQCWS-D-VRFQHFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCYGS 82 (257)
T ss_dssp CCCEECCBSC-SEEESSCCEEEEEEE-S-SCCSEEEEEEESTTCEEEEEECBCCTTCEEEEEEECSCCTTTCEEEEEEEE
T ss_pred CCCEEEEcCC-CEecCCCCEEEEEec-C-CCCcEEEEEECCCCCCcceeeeeccCCCceEEEEeecCCcccCEEEEEeEe
Confidence 3677888886 779999999999998 3 35678999999876532100 000 01124679999999999999999998
Q ss_pred ecC----ceeeeEeEEEEEEc---CCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCce-EEe----c
Q psy574 82 NVA----GTRESTDAVLRVLV---KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRM-SVL----P 149 (977)
Q Consensus 82 n~~----g~~~s~~~~l~V~~---~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~-~~~----~ 149 (977)
+.. ....+..+.|.|.. +|.+...|. ..+.+|++++|.|.+.+.+ +.+.|+|++..+..... ... .
T Consensus 83 ~~~~~~~~s~~S~~~~L~V~~~~~~P~l~~~p~-~~V~~G~~vtL~C~~~~~~-~~~~w~k~g~~~~~~~~~~~~~~~~~ 160 (257)
T 1b6u_A 83 VTHSPYQLSAPSDPLDIVITGLYEKPSLSAQPG-PTVLAGESVTLSCSSRSSY-DMYHLSREGEAHERRFSAGPKVNGTF 160 (257)
T ss_dssp CSSCTTSCCCCCCCEEEEEECSSCCCEEECSSC-TTCBTTCEEEEEEECSSCC-SEEEEEETTSSCEECCBCBCCSSSCC
T ss_pred ccCCCccccccCCCEEEecccCCCCcceEccCC-CccCCCCEEEEEEeCCCCC-cEEEEEECCcccCcccccccccCCce
Confidence 643 12346677888874 467766665 4688999999999997764 68999999987653221 111 2
Q ss_pred cceEEEccCccCCCeEEEEEEEeCCe-----eEEEEEEEEEeeCCeEEec-CCCcEEeeCCeEEEEEEEecCCCCeEEEE
Q psy574 150 SRSLQLSDVRLEDAGEYVCEAENAVG-----KISASATLTVQMAPIVRER-PSDLRLEVGRDAVFLCGIEGSPPPSTFWM 223 (977)
Q Consensus 150 ~~~L~I~~v~~~D~G~Y~C~a~n~~g-----~~~~~~~L~V~~~p~~~~~-p~~~~v~~G~~v~L~C~~~g~p~~~i~W~ 223 (977)
+..|.|.+++ |+|.|+|.|.+... ..+..+.|.|..+|.+... |.......|..+.|.|.+ |.+.+.|.|.
T Consensus 161 ~~~l~I~~v~--D~G~Y~C~a~~~~~p~~~s~~S~pl~L~V~g~p~~~~p~~~~~~~~~g~~~~l~~~~-~~~~~~~~~~ 237 (257)
T 1b6u_A 161 QADFPLGPAT--HGGTYRCFGSFRDSPYEWSNSSDPLLVSVTGNPSNSWPSPTEPSSETGNPRHLHAAA-EQKLISEEDL 237 (257)
T ss_dssp BEEEEEEECC--SCEEEEEEEECSSCTTBBCCCCCCEEECCBCCC-----------------------------------
T ss_pred eEEEEecccc--cCEEEEEEEEcCCCCcccccCCCCEEEEEeccCCCCCCCCcccCccCCCeEEEEEEE-cchHHHHHHh
Confidence 5689999998 99999999997532 2456788999988876522 223356679999999865 5666788887
Q ss_pred EcC
Q psy574 224 LEG 226 (977)
Q Consensus 224 ~~g 226 (977)
..+
T Consensus 238 ~~~ 240 (257)
T 1b6u_A 238 NLD 240 (257)
T ss_dssp ---
T ss_pred hhh
Confidence 654
No 225
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A
Probab=99.79 E-value=1.9e-18 Score=175.94 Aligned_cols=179 Identities=13% Similarity=0.133 Sum_probs=128.7
Q ss_pred CCCce-EEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceEEe-ccceEEEccCccCCCeEEEEEEEeCCeeEEEEEE
Q psy574 105 GPKDT-TVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVL-PSRSLQLSDVRLEDAGEYVCEAENAVGKISASAT 182 (977)
Q Consensus 105 ~p~~~-~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~-~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~ 182 (977)
.|.+. .+.+|+++.|.|.+.|.|.+.|.|+++.......+.... .+..|.|.+++.+|+|.|+|.|.|..+..+..+.
T Consensus 6 ~p~~~~~~~~G~~v~L~C~~~g~P~p~i~W~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~ 85 (202)
T 1vca_A 6 TPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQ 85 (202)
T ss_dssp ESSSEEEEETTSCEEEEEEEESCSSCEEEEEETTCCCCSSEEEEETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEE
T ss_pred CCCCcEEEcCCCcEEEEEeecCCCCCeEEEECCCCCCccceEEEcCCccEEEECcCCHHHCEEEEEEEEECCceEeeEEE
Confidence 34444 445999999999999999999999995322111222222 3457999999999999999999999998888999
Q ss_pred EEEeeCCeE-EecCCCcEEeeCCeEEEEEEEecCCC---CeEEEEEcCeeeeecCCCccccEEEEEccCCceEEEEeecc
Q psy574 183 LTVQMAPIV-RERPSDLRLEVGRDAVFLCGIEGSPP---PSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVS 258 (977)
Q Consensus 183 L~V~~~p~~-~~~p~~~~v~~G~~v~L~C~~~g~p~---~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~s~L~I~~v~ 258 (977)
|.|..+|.. ...+. ..+.+|+.++|.|.+.+.++ +.+.|+|++..+............... .....|.|..+.
T Consensus 86 l~V~~~p~~~~~~~~-~~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~~~~l~~~~~~~~~~~~~~~--~~~~~l~i~~~~ 162 (202)
T 1vca_A 86 VEIYSFPKDPEIHLS-GPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLE--TKSLEVTFTPVI 162 (202)
T ss_dssp EEEEBCCSCCEEEES-SCEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCE--EEEEEEEECCCG
T ss_pred EEEEeCCCCCEeCCc-eEEcCCCCEEEEEEECCcCCCCCeEEEEEeCCeECcccccccccCcCcce--EEEEEEEEEeee
Confidence 999977643 33333 67899999999999988643 378999999876422100000000000 122367888888
Q ss_pred cCCCCeEEEEEEEcCCCc-------eeEEEEEEEEC
Q psy574 259 RTAAPLIILCLGVNAAGS-------DLARASLTVSG 287 (977)
Q Consensus 259 ~~d~G~Y~~C~a~n~~g~-------~~~~~~l~V~~ 287 (977)
.+|.|.|+ |.|.|..+. ...+..|.|..
T Consensus 163 ~d~~g~yt-C~A~n~~~~~~~~~~~~~~~~~L~V~y 197 (202)
T 1vca_A 163 EDIGKVLV-CRAKLHIDEMDSVPTVRQAVKELQVYI 197 (202)
T ss_dssp GGTTCEEE-EEEEECSCCCTTSCSEEEEEEECCEEC
T ss_pred ccCCCeEE-EEEEccccCCCCcceeEeeEEEEEEec
Confidence 88999999 999998875 34567888887
No 226
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A
Probab=99.79 E-value=2.7e-19 Score=179.71 Aligned_cols=146 Identities=19% Similarity=0.319 Sum_probs=110.3
Q ss_pred ceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcC-CCCCCCeEEEEEEEecCceeeeEeE
Q psy574 14 SQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQD-SRKTDDGRYQCVVKNVAGTRESTDA 92 (977)
Q Consensus 14 ~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~-v~~~D~G~Y~C~a~n~~g~~~s~~~ 92 (977)
-..+.+|++++|.|.+ .+ |. .|.|+|||..+... .+++|.|.+ ++.+|+|.|+|+|.|..|. .+..+
T Consensus 8 ~~v~~~G~~v~L~C~~-~~-~~-~i~W~k~g~~l~~~--------~~~~L~I~~~~~~~D~G~Y~C~a~n~~g~-~~~~~ 75 (186)
T 1jbj_A 8 YKVSISGTSVELTCPL-DS-DE-NLKWEKNGQELPQK--------HDKHLVLQDFSEVEDSGYYVCYTPASNKN-TYLYL 75 (186)
T ss_dssp CEEEEETTEEEEECSS-CC-CT-TCEEEETTEEECSC--------CCSEEEEESCCTTTSCEEEEEECSSCCCC-CCEEE
T ss_pred EEEEeCCcEEEEEEeC-CC-CC-ceEEEECCEECCCC--------CCCEEEECCCCccccCEEEEEEEEeCCCc-EEEEE
Confidence 3456889999999998 55 43 49999999999543 256899999 9999999999999998876 33333
Q ss_pred EEEEEc--CCeE----------------E--eCC--Cc---eEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceEE
Q psy574 93 VLRVLV--KPYI----------------I--RGP--KD---TTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSV 147 (977)
Q Consensus 93 ~l~V~~--~P~~----------------~--~~p--~~---~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~ 147 (977)
.+.|.. +|.. . ..+ .. ..+.+|+++.|.|.+ |.+.|.|+|++..+.....
T Consensus 76 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~l~C~~---p~p~i~W~k~g~~i~~~~~-- 150 (186)
T 1jbj_A 76 KARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGL---TDKTIKWLKDGSIISPLNA-- 150 (186)
T ss_dssp CCCCCSCCCCCCCCCCCCCCSCCSSSTTCCSCCCCSSCCEECCCSSSCEEEEECSS---SCSCEEEEETTEECCCSSC--
T ss_pred EEEEecccccccccccccccccCCccccccccccccccccceecCCCCeEEEEeeC---CCCeEEEEECCEECcccCC--
Confidence 444332 1110 0 000 01 123499999999998 7889999999999874332
Q ss_pred eccceEEEccCccCCCeEEEEEEEeCCeeE
Q psy574 148 LPSRSLQLSDVRLEDAGEYVCEAENAVGKI 177 (977)
Q Consensus 148 ~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~ 177 (977)
..+.|.|.++..+|+|.|+|.|.|..|..
T Consensus 151 -~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~ 179 (186)
T 1jbj_A 151 -TKNTWNLGNNAKDPRGTYQCQGAKETSNP 179 (186)
T ss_dssp -CSSCCEEEETTSCCEEEEEEEESSCEEEE
T ss_pred -CcceEEECCCCcCcCEEEEEEEEcCcCCc
Confidence 56789999999999999999999998765
No 227
>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*
Probab=99.79 E-value=6.5e-19 Score=180.77 Aligned_cols=166 Identities=18% Similarity=0.243 Sum_probs=125.3
Q ss_pred ceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeC--CEEe----------ecCCCceEEEecC---cEEEEcCCCCCC
Q psy574 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKN--GHPI----------DFENSKRLRLVDG---TNLAIQDSRKTD 72 (977)
Q Consensus 8 ~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~--g~~l----------~~~~~~r~~~~~~---g~L~I~~v~~~D 72 (977)
+.. |..+.+.+|++++|.|.+ .+.|.+.|.|+|+ |..+ ......|+.+..+ .+|.|.+++.+|
T Consensus 4 v~q-p~~~~v~~G~~v~L~C~~-~~~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D 81 (210)
T 1lk3_L 4 LTQ-PPALTVSPGEKLTISCKA-SESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADD 81 (210)
T ss_dssp EEC-CSEEEECTTSCEEEEEEE-SSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred EEC-CCcEEEcCCCCEEEEeeC-CCccCCCEEEEEECCCCCeEEEEEccccccCCccccEEEEecCCEEEEEECCCCHHH
Confidence 445 889999999999999999 7888889999984 2221 1122356666533 379999999999
Q ss_pred CeEEEEEEEecCceeeeEeEEEEEEc---CCeEEeCCCceEEeCCCeEEEEEEecc-cCce-EEEEEECCeeCCCC-ceE
Q psy574 73 DGRYQCVVKNVAGTRESTDAVLRVLV---KPYIIRGPKDTTVSASSIIVFECSVGG-DAVL-TVHWKRLGSAMPED-RMS 146 (977)
Q Consensus 73 ~G~Y~C~a~n~~g~~~s~~~~l~V~~---~P~~~~~p~~~~v~~G~~v~l~C~v~g-~p~~-~i~W~k~~~~l~~~-~~~ 146 (977)
+|.|+|.+.|..+......+.|.|.. +|.+...+....+.+|+.++|.|.+.| .|.+ .|.|+|++..+..+ ...
T Consensus 82 ~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~ 161 (210)
T 1lk3_L 82 TAIYFCQQSWNGPLTFGAGTKLELKRADAAPTVSIFPPSTEQLATGGASVVCLMNNFYPRDISVKWKIDGTERRDGVLDS 161 (210)
T ss_dssp CEEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEECCTTEEEE
T ss_pred CeEEEEEEEcCCCceeCCCEEEEEcCCCcCCeEEEECCchhhccCCcEEEEEEEEeEeCCceEEEEEeCCccCCCCceEc
Confidence 99999999988765444456788875 577666554444558999999999976 4554 89999999988765 111
Q ss_pred E--e--cc------ceEEEccCccCCCeEEEEEEEeCCe
Q psy574 147 V--L--PS------RSLQLSDVRLEDAGEYVCEAENAVG 175 (977)
Q Consensus 147 ~--~--~~------~~L~I~~v~~~D~G~Y~C~a~n~~g 175 (977)
. . .+ ..|.|.++..+|+|.|+|.|.|...
T Consensus 162 ~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~ 200 (210)
T 1lk3_L 162 VTDQDSKDSTYSMSSTLSLTKADYESHNLYTCEVVHKTS 200 (210)
T ss_dssp ECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTC
T ss_pred cCCccCCCCCEEEEEEEEEChHHhccCCcEEEEEEecCC
Confidence 1 1 12 2699999999999999999999765
No 228
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X
Probab=99.79 E-value=7.9e-19 Score=180.26 Aligned_cols=174 Identities=20% Similarity=0.249 Sum_probs=138.0
Q ss_pred CCCceEEeCCCeEEEEEEecccC----ceEEEEEEC----------------CeeCC------CCceEEec------cce
Q psy574 105 GPKDTTVSASSIIVFECSVGGDA----VLTVHWKRL----------------GSAMP------EDRMSVLP------SRS 152 (977)
Q Consensus 105 ~p~~~~v~~G~~v~l~C~v~g~p----~~~i~W~k~----------------~~~l~------~~~~~~~~------~~~ 152 (977)
.+..+.+.+|+++.|.|.+.+.+ .+.+.|+|+ +..+. .+|..+.. +.+
T Consensus 6 ~~~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 85 (214)
T 3jz7_A 6 PEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDAS 85 (214)
T ss_dssp CEEEEEEETTSCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCSCGGGTBCC
T ss_pred CCceEEEecCCCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEeccCccCCccc
Confidence 34566889999999999998776 469999983 33333 34555543 568
Q ss_pred EEEccCccCCCeEEEEEEEeCCeeEEEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEE-ecCCCCeEEEEEcCeeeee
Q psy574 153 LQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGI-EGSPPPSTFWMLEGNRSLI 231 (977)
Q Consensus 153 L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~-~g~p~~~i~W~~~g~~~~~ 231 (977)
|.|.+++.+|+|.|+|.+.|..+..+..+.|.|..+|.+...+....+.+|+.++|.|.+ .+.|.+.+.|++++.....
T Consensus 86 L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~~~~~~~ 165 (214)
T 3jz7_A 86 INVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTM 165 (214)
T ss_dssp EEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCBSCEEEEESCCBTTCCEEEEEECSBCCSSCEEEEEECSTTCCC
T ss_pred EEEccCChhhCeEEEEEEEeCCCccccEEEEEEEcCCCCceeeeecceecCCcEEEEecCCCCCCCCEEEEEECCCCCcc
Confidence 999999999999999999999998899999999988877665555568899999999999 8999999999996543322
Q ss_pred cCCCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEEC
Q psy574 232 YPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSG 287 (977)
Q Consensus 232 ~~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~ 287 (977)
... ... . .....|.|.+++.+|+|.|+ |.|.|..|.....+.|.|..
T Consensus 166 ~~~---~~~---~--~~~~~L~i~~~~~~d~G~Y~-C~a~N~~g~~~~~~~l~V~~ 212 (214)
T 3jz7_A 166 PTP---WLA---E--MTSPVISVKNASSEYSGTYS-CTVQNRVGSDQCMLRLDVVP 212 (214)
T ss_dssp CGG---GGG---G--TTSSEEEECSCCGGGCEEEE-EEEECSSCEEEEEEEECCBC
T ss_pred Ccc---cee---c--cCCCEEEEecCCHHHCEEEE-EEEEcCCCcEEEEEEEEEeC
Confidence 110 000 0 11239999999999999999 99999999998888888874
No 229
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Probab=99.78 E-value=6.7e-19 Score=183.40 Aligned_cols=176 Identities=21% Similarity=0.344 Sum_probs=134.2
Q ss_pred ecccceEEeCCCcEEEEEECCCCCCC-CeEEEEeCCEE-----ee------cCCCceEE----------EecCcEEEEcC
Q psy574 10 VQPKSQRVAAGDTALLECGPPRGHPE-PTLVWKKNGHP-----ID------FENSKRLR----------LVDGTNLAIQD 67 (977)
Q Consensus 10 ~~p~~~~v~~G~~v~L~C~~~~g~P~-~~v~W~k~g~~-----l~------~~~~~r~~----------~~~~g~L~I~~ 67 (977)
..|.++.+.+|++++|.|.+ .+.|. +.|.|+|++.. +. .....|+. +..++.|.|.+
T Consensus 5 ~~p~~~~v~~G~~v~L~C~~-~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~L~i~~ 83 (231)
T 2pet_A 5 SVPPLVEVMRGKSVILDCTP-TGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQGRLVLAE 83 (231)
T ss_dssp CCCSEEEEETTCCEEECCCC-BSCCSEEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEECTTCCEEESS
T ss_pred cCCCcEEEEcCCCEEEeccc-CCCCCceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccCCCceEEEcc
Confidence 36778999999999999998 67774 89999985433 11 00134555 67678899999
Q ss_pred CCCCCCeEEEEEEEecCceeeeEeEEEEEEcC---CeEEeCCCceEEeCCCeE-EEEEEe-cccCceEEEEEECCeeCCC
Q psy574 68 SRKTDDGRYQCVVKNVAGTRESTDAVLRVLVK---PYIIRGPKDTTVSASSII-VFECSV-GGDAVLTVHWKRLGSAMPE 142 (977)
Q Consensus 68 v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V~~~---P~~~~~p~~~~v~~G~~v-~l~C~v-~g~p~~~i~W~k~~~~l~~ 142 (977)
++.+|+|.|+|.+.+..+...+..+.|.|..+ |.+...+....+.+|+.+ .|.|.+ .|.|.+.+.|+|++..+..
T Consensus 84 v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~g~~~~~l~C~~~~~~p~p~i~W~~~~~~~~~ 163 (231)
T 2pet_A 84 AQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEV 163 (231)
T ss_dssp CCGGGCEEEEEEEECGGGCEEEEEEEEEEEBCCCCCEEEECCSSCCTTCCSEEEEEEEEEEEEBSCCEEEEEETTEECCC
T ss_pred cCcccCceEEEEEEecCCCceEEEEEEEEEecCCCcEEecCCcceeecCCCceEEEEEEeECcccCCEEEEEECCccCcc
Confidence 99999999999999987334567788999876 456666777778899988 999999 8999999999999998865
Q ss_pred Cc-----eEEec------------cceEEEccCccCCCeEEEEEEEe-----CCee-EEEEEEEEEe
Q psy574 143 DR-----MSVLP------------SRSLQLSDVRLEDAGEYVCEAEN-----AVGK-ISASATLTVQ 186 (977)
Q Consensus 143 ~~-----~~~~~------------~~~L~I~~v~~~D~G~Y~C~a~n-----~~g~-~~~~~~L~V~ 186 (977)
.. +.+.. .+.|.|.....+|.|.|+|.|.| ..+. .+..+.|+|+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~dd~g~Y~C~a~n~~~~~~~~~~~s~~~~l~V~ 230 (231)
T 2pet_A 164 PVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYSLPEGRHGRLDSPTFHLTLH 230 (231)
T ss_dssp CSSCCSSEEEEEEEEECTTSCEEEEEEEEEECCGGGGGCEEEEEEEEECGGGCEEEEECCCEECCCC
T ss_pred ccccccceeecceeEecCCCeEEEEEEEEEecchhhCCceEEEEEEcCCcccccccccccceEEEEe
Confidence 43 33321 15688876667779999999999 4454 4455565553
No 230
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.78 E-value=3.5e-20 Score=206.33 Aligned_cols=201 Identities=18% Similarity=0.219 Sum_probs=158.4
Q ss_pred CCeEEEEEEEecCceeeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCC--ceEEec
Q psy574 72 DDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED--RMSVLP 149 (977)
Q Consensus 72 D~G~Y~C~a~n~~g~~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~--~~~~~~ 149 (977)
|.|.|+|.+.+... .+.+.+-.+|.+...|.+..+.+|+++.|.|.+.|.|.+.+.|++++..+... +.....
T Consensus 136 ~~~~~~C~~~~~l~-----~l~~~~c~~P~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~ 210 (347)
T 2ifg_A 136 PEQKLQCHGQGPLA-----HMPNASCGVPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLP 210 (347)
T ss_dssp GGGCCCCSSSSCSS-----CCCCTTCCCCEEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECCCCCSS
T ss_pred cccCCCCCCChHHh-----cCCcccCCCCceeccCCceEEeCCCcEEEEEEEecCCCCEEEEEcCCceeecccccceecc
Confidence 56899998766211 12223335788888888999999999999999999999999999998765421 112235
Q ss_pred cceEEEccCccCCCe-EEEEEEEeCCeeEEEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCee
Q psy574 150 SRSLQLSDVRLEDAG-EYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNR 228 (977)
Q Consensus 150 ~~~L~I~~v~~~D~G-~Y~C~a~n~~g~~~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~ 228 (977)
+++|.|.+++.+|+| .|+|.|.|..|..+..+.|.|..+|.+ ....+.+|+.++|.|.+.|.|.|.|.|+++|..
T Consensus 211 ~~~L~i~~v~~~D~G~~Y~C~a~n~~g~~~~~~~l~V~~~P~i----~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~ 286 (347)
T 2ifg_A 211 SLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNVSFPASV----QLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSV 286 (347)
T ss_dssp EEEEEEESCCSTTTTCCEEECCEETTEECCEEECCCCBEEEEE----EECCCEESSSEEEEEEEEEESCCEEEEEETTEE
T ss_pred cceEEEeeCChHHCCCeEEEEEEcCCCCEEEEEEEEEcCCCee----eeccCccCceEEEEEEeeecCCCcEEEEeCCEE
Confidence 678999999999999 999999999999888999999988886 112346899999999999999999999999987
Q ss_pred eeecCCCccccEEEEEcc------CCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEEC
Q psy574 229 SLIYPGDRVDNIQAEITS------DGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSG 287 (977)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~------~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~ 287 (977)
+.. .......... ....+|.|.+++.+|+|.|+ |.|.|..|....++.|.|.+
T Consensus 287 l~~-----~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~-C~a~N~~G~~~~~~~l~V~~ 345 (347)
T 2ifg_A 287 LNE-----TSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYT-LLAANPFGQASASIMAAFMD 345 (347)
T ss_dssp CCC-----CSSEEEEECCCCTTCCCEEEEEEESSCCGGGCEEEE-EEEEETTEEEEEEEEECSCC
T ss_pred CCC-----CcceeeEEEeecCCCcccceEEEECCCCcccCceEE-EEEecCCCceeeEEEEEecC
Confidence 641 1122211110 11348999999999999999 99999999998888888776
No 231
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Probab=99.78 E-value=1.8e-18 Score=175.71 Aligned_cols=174 Identities=19% Similarity=0.202 Sum_probs=138.7
Q ss_pred EEeCCCceEEeCCCeEEEEEE-ecccCc-eEEEEEECCeeCC---CCceEE-eccceEEEccCccCCCeEEEEEEEeCCe
Q psy574 102 IIRGPKDTTVSASSIIVFECS-VGGDAV-LTVHWKRLGSAMP---EDRMSV-LPSRSLQLSDVRLEDAGEYVCEAENAVG 175 (977)
Q Consensus 102 ~~~~p~~~~v~~G~~v~l~C~-v~g~p~-~~i~W~k~~~~l~---~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~a~n~~g 175 (977)
....+.+..+.+|+++.|.|. +.+.|. +.+.|+|++..+. ..+... ..+++|.|.+++.+|+|.|+|.+.|..+
T Consensus 11 ~~~~~~~~~v~~G~~v~L~C~~~~~~p~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~ 90 (201)
T 3s97_C 11 PPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSSPSI 90 (201)
T ss_dssp CSSCCCCEEEETTCCEEECCCCCSEESSCCEEEEEESSTTCBCCCSSSEEECTTTCCEEESSCCGGGCEEEEEEEEEGGG
T ss_pred CcCCCceEEEECCCCEEEeccccccCCCceEEEEEECCceeeeeeCCCeEEEcCCCeEEECcCCcccCeEEEEEEEecCC
Confidence 344567889999999999999 888898 9999999998773 233333 3567899999999999999999999765
Q ss_pred eEEE---EEEEEEe-------eCCeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCccccEEEEEc
Q psy574 176 KISA---SATLTVQ-------MAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEIT 245 (977)
Q Consensus 176 ~~~~---~~~L~V~-------~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~ 245 (977)
.... .+.+.+. .+|.+...+....+.+|+.++|.|.+.+.|.+.+.|++++..+. .. .... .
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~-----~~--~~~~-~ 162 (201)
T 3s97_C 91 TKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMP-----ST--AEIS-T 162 (201)
T ss_dssp TEEEECCCEEEEEECCSSCCCEEEEEEEECCCEEEETTCCEEEEEEEEEESCCEEEEEETTBCCC-----TT--CEEE-T
T ss_pred CcchhhcccceeeccccccCCCCCceEecCCceEEecCCcEEEEEEccCCCCCceEEEeCCCcCC-----Cc--eeec-C
Confidence 4332 3444443 45667777778899999999999999999999999999998653 11 1111 1
Q ss_pred cCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEE
Q psy574 246 SDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVS 286 (977)
Q Consensus 246 ~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~ 286 (977)
....|.|.++..+|+|.|+ |.|.|..|.....+.|.|+
T Consensus 163 --~~~~L~i~~v~~~d~G~Y~-C~a~n~~g~~~~~~~l~V~ 200 (201)
T 3s97_C 163 --SGAVLKIFNIQLEDEGIYE-CEAENIRGKDKHQARIYVQ 200 (201)
T ss_dssp --TTTEEEECSCCGGGCEEEE-EEEEETTEEEEEEEEEEEE
T ss_pred --CCCEEEEccCChhhCEEEE-EEEEecCCceeeeEEEEEe
Confidence 2239999999999999999 9999999999999888886
No 232
>3nl4_L Antigen binding fragment, immunoglobulin IGG - LI; FAB, rabbit, conformation-specific, amyloid, immune system; 1.54A {Oryctolagus cuniculus} PDB: 4hbc_L
Probab=99.78 E-value=1.5e-18 Score=178.31 Aligned_cols=165 Identities=19% Similarity=0.288 Sum_probs=126.5
Q ss_pred ccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCC--E---Eeec-------CCCceEEEecC---cEEEEcCCCC
Q psy574 6 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNG--H---PIDF-------ENSKRLRLVDG---TNLAIQDSRK 70 (977)
Q Consensus 6 ~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g--~---~l~~-------~~~~r~~~~~~---g~L~I~~v~~ 70 (977)
+.+...|.++.+.+|++++|.|.+ .+.|.+.|.|+|++ . .+.. ....|+.+..+ .+|.|.+++.
T Consensus 2 ~~v~~~p~~~~v~~G~~v~L~C~~-~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~ 80 (213)
T 3nl4_L 2 VVMTQTPASVSEPVGGTVTIKCQA-SQSISSYLAWYQQKPGQRPRLLIYETSTLASGVPSRFKGSGSGTDFTLTISDLEC 80 (213)
T ss_dssp CCEEEECSEEEEETTCCEEEEEEE-SSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCG
T ss_pred ccEEeCCCeEEEcCCCCEEEEEEe-cCCCCceEEEEEECCCCCcEEEEEeCCccCCCCCccEEEecCCCEEEEEECCCCh
Confidence 456777889999999999999999 77789999999942 1 1111 12356666533 3799999999
Q ss_pred CCCeEEEEEEEecCce--eeeEeEEEEEE---cCCeEEeCCCceEEeCCCeEEEEEEecc-cCceEEEEEECCeeCCCCc
Q psy574 71 TDDGRYQCVVKNVAGT--RESTDAVLRVL---VKPYIIRGPKDTTVSASSIIVFECSVGG-DAVLTVHWKRLGSAMPEDR 144 (977)
Q Consensus 71 ~D~G~Y~C~a~n~~g~--~~s~~~~l~V~---~~P~~~~~p~~~~v~~G~~v~l~C~v~g-~p~~~i~W~k~~~~l~~~~ 144 (977)
+|+|.|+|.|.|..+. .....+.|.|. .+|.+...+....+.+|+.++|.|.+.| .|.+.|.|+|++..+..+.
T Consensus 81 ~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~l~C~~~g~~P~~~v~W~k~g~~~~~~~ 160 (213)
T 3nl4_L 81 ADAATYYCQSTYENPTYVSFGGGTEVGVKGDPVAPTVLIFPPSADLVATGTVTIVCVANKYFPDVTVTWEVDGTTQTTGI 160 (213)
T ss_dssp GGCEEEEEEECCSSTTTCEECCCEEEEEECCCBCCEEEEECCCHHHHTTSEEEEEEEEEEEBSCCEEEEEETTEECCSSE
T ss_pred HHCEEEEEecCCCCceeEEeCCCeEEEEeCCCcCCeEEEeCCchhhccCCcEeEEEEEecccCCcEEEEEeCCccCCCCe
Confidence 9999999999987663 33445667773 5666766555556678999999999987 8999999999999886432
Q ss_pred -----------eEEeccceEEEccCccCCCeEEEEEEE
Q psy574 145 -----------MSVLPSRSLQLSDVRLEDAGEYVCEAE 171 (977)
Q Consensus 145 -----------~~~~~~~~L~I~~v~~~D~G~Y~C~a~ 171 (977)
......+.|.|.++..+|.|.|+|.|.
T Consensus 161 ~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~ 198 (213)
T 3nl4_L 161 ENSKTPQNSADCTYNLSSTLTLTSTEYNSHKEYTCKVT 198 (213)
T ss_dssp EEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEE
T ss_pred ecccCcccCCCCeEEEEEEEEecHHHcCCCCeEEEEEE
Confidence 111123569999999999999999999
No 233
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Probab=99.78 E-value=1.3e-18 Score=172.77 Aligned_cols=166 Identities=13% Similarity=0.210 Sum_probs=133.2
Q ss_pred cCCeEEeCCCceEEeCCCeEEEEEEecccCceE-EEEEECCeeCCCCceEEeccceEEEccCccCCCeEEEEEEEeCCee
Q psy574 98 VKPYIIRGPKDTTVSASSIIVFECSVGGDAVLT-VHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGK 176 (977)
Q Consensus 98 ~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~-i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~ 176 (977)
.+|.+...|....+.+|++++|.|.+.+.|.+. +.|+|++..+.. ....|.|.+++.+|+|.|+|.+.|..+
T Consensus 6 ~~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~~~W~~~~~~~~~------~~~~L~i~~~~~~d~G~Y~C~~~n~~~- 78 (175)
T 1fnl_A 6 PKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISS------QASSYFIDAATVNDSGEYRCQTNLSTL- 78 (175)
T ss_dssp CCCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEES------SCSEEEESSCCGGGCEEEEEECSSSCC-
T ss_pred CCCEEEEcCCceeeeCCCcEEEEeeCCCCCCCcceEEEECCEEccC------CceEEEEeCCCcccCEEEEEEeeCCcc-
Confidence 457778888888999999999999998887766 889999987754 457899999999999999999998554
Q ss_pred EEEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEEecCCCC-eEEEEEcCeeeeecCCCccccEEEEEccCCceEEEEe
Q psy574 177 ISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPP-STFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQ 255 (977)
Q Consensus 177 ~~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~-~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~s~L~I~ 255 (977)
+..+.|.|..++.+.. +....+.+|+.++|.|.+.+.+++ .+.|+|+|..+... . ....|.|.
T Consensus 79 -s~~~~l~V~~~~~~~~-~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~k~g~~~~~~-----------~---~~~~L~i~ 142 (175)
T 1fnl_A 79 -SDPVQLEVHIGWLLLQ-APRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYF-----------H---HNSDFHIP 142 (175)
T ss_dssp -CCCEEEEEECSSEEEE-CSCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEEE-----------E---ECCCEEES
T ss_pred -cccEEEEEeCCCceee-CCCceecCCCCEEEEEEcCCCCCceEEEEEECCeEccCC-----------C---CCCEEEEc
Confidence 4567788876555444 345788999999999999987665 99999999876311 0 12389999
Q ss_pred ecccCCCCeEEEEEEEcCCCc-eeEEEEEEEEC
Q psy574 256 NVSRTAAPLIILCLGVNAAGS-DLARASLTVSG 287 (977)
Q Consensus 256 ~v~~~d~G~Y~~C~a~n~~g~-~~~~~~l~V~~ 287 (977)
+++.+|+|.|+ |.|.|..+. .+..+.|.|.+
T Consensus 143 ~v~~~d~G~Y~-C~a~n~~~~~~s~~~~l~V~~ 174 (175)
T 1fnl_A 143 KATLKDSGSYF-CRGLVGSKNVSSETVNITITQ 174 (175)
T ss_dssp SCCGGGCEEEE-EEEEETTEEEECCCEEEEEEC
T ss_pred ccChhhCeEEE-EEEEcCCCCccCccEEEEEeC
Confidence 99999999999 999997654 44556777764
No 234
>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A
Probab=99.78 E-value=1.6e-18 Score=183.45 Aligned_cols=185 Identities=17% Similarity=0.258 Sum_probs=134.5
Q ss_pred cceecccceEEeCCCcEEEEEECCCCCC--CCeEEEEeC--CEEe---------------ecCCCceEEEecCc-----E
Q psy574 7 EFRVQPKSQRVAAGDTALLECGPPRGHP--EPTLVWKKN--GHPI---------------DFENSKRLRLVDGT-----N 62 (977)
Q Consensus 7 ~~~~~p~~~~v~~G~~v~L~C~~~~g~P--~~~v~W~k~--g~~l---------------~~~~~~r~~~~~~g-----~ 62 (977)
.+..+|.++.+.+|++|+|.|.+ .+.+ .+.|.|+|. +..+ ......|+.+..++ +
T Consensus 3 ~~~~~p~~~~v~~G~~v~L~C~~-~g~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 81 (253)
T 3uzq_A 3 KLLEQSGAELVKPGASVRLSCTA-SGFNIKDTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTSSNTAY 81 (253)
T ss_dssp CCEEECCCEEECTTCCEEEEEEE-CSSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEE
T ss_pred eeEecCCCeeecCCCcEEEEEEe-eCCcccCceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecCCCeEE
Confidence 45678889999999999999998 5643 679999992 2111 11123566665432 4
Q ss_pred EEEcCCCCCCCeEEEEEEEecCceeeeEeEEEEEEc---------------CCeEEeCCCceEEeCCCeEEEEEEecccC
Q psy574 63 LAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLV---------------KPYIIRGPKDTTVSASSIIVFECSVGGDA 127 (977)
Q Consensus 63 L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V~~---------------~P~~~~~p~~~~v~~G~~v~l~C~v~g~p 127 (977)
|.|.+++.+|+|.|+|.+.|..+......+.|.|.. +|.+...|....+.+|++++|.|.+.+.+
T Consensus 82 L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~ 161 (253)
T 3uzq_A 82 LHLSSLTSGDTAVYYCSRGWEGFAYWGQGTLVTVSAGGGGSGGGGSGGGGSELVMTQTPASLAVSLGQRATISCRASENV 161 (253)
T ss_dssp EEECSCCGGGCEEEEEEECSSSCCEECCCEEEEECSSSCCCCC---------CCEEEECSEEEECTTSCEEEEEEESSCC
T ss_pred EEeCCCCcccCEEEEEEEeeCCccEECCCcEEEEecCCccccccccCCCcccceEECcCCeEEEeCCCCEEEEEEecCcc
Confidence 999999999999999999986655444566788874 46777888889999999999999998888
Q ss_pred ce----EEEEEECC--eeCC-------------CCceEEe---ccceEEEccCccCCCeEEEEEEEeCCee-EEEEEEEE
Q psy574 128 VL----TVHWKRLG--SAMP-------------EDRMSVL---PSRSLQLSDVRLEDAGEYVCEAENAVGK-ISASATLT 184 (977)
Q Consensus 128 ~~----~i~W~k~~--~~l~-------------~~~~~~~---~~~~L~I~~v~~~D~G~Y~C~a~n~~g~-~~~~~~L~ 184 (977)
.+ .+.|+|++ ..+. .+++... ...+|.|.+++.+|+|.|+|.|.|..+. .....+|.
T Consensus 162 ~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~~~fg~gt~l~ 241 (253)
T 3uzq_A 162 DRYGNSFMHWYQQKAGQPPKLLIYRASNLESGIPARFSGSGSRTDFTLTINPVEADDVATYFCQRSNEVPWTFGGGTKLE 241 (253)
T ss_dssp EETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCCBCCCEEEE
T ss_pred ccCCCcEEEEEEECCCCCCEEEEEEccccCCccCCceEEeCCCCEEEEEECCCCHHHCEEEEEEEccCCCcEECCCEEEE
Confidence 76 89999952 2211 1344332 2346999999999999999999986543 34456788
Q ss_pred EeeCCeEE
Q psy574 185 VQMAPIVR 192 (977)
Q Consensus 185 V~~~p~~~ 192 (977)
|...+.+.
T Consensus 242 v~~~~~~~ 249 (253)
T 3uzq_A 242 IKRPLEHH 249 (253)
T ss_dssp ECCC----
T ss_pred EcCCCCCc
Confidence 87655543
No 235
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A
Probab=99.78 E-value=1.6e-18 Score=176.04 Aligned_cols=169 Identities=16% Similarity=0.255 Sum_probs=124.1
Q ss_pred cCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCC---ceEEeccceEEEccCccCCCeEEEEEEEeCC
Q psy574 98 VKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED---RMSVLPSRSLQLSDVRLEDAGEYVCEAENAV 174 (977)
Q Consensus 98 ~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~---~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~ 174 (977)
.+|.+...|. ..+.+|++++|.|.+.+.|. .+.|+|++..+... ......+..|.|.+++.+|+|.|+|.|.|..
T Consensus 4 ~~P~i~~~p~-~~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~ 81 (198)
T 1ugn_A 4 PKPTLWAEPG-SVITQGSPVTLRCQGGQETQ-EYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYYGSDT 81 (198)
T ss_dssp CCCEEEEESC-SEEETTCCEEEEEECCTTCC-CEEEEESSSCCHHHHTSCHHHHTTTEEEESSCCGGGCEEEEEEEEETT
T ss_pred CCCeEeccCC-CcccCCCcEEEEEEecCCCc-EEEEEECCccccccccccccCCcccEEEECCCCHHHCeEEEEEEECCC
Confidence 4677777776 48899999999999988776 69999999877421 1112256789999999999999999999987
Q ss_pred -e--eEEEEEEEEEee---CCeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCccccEEEEEccCC
Q psy574 175 -G--KISASATLTVQM---APIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDG 248 (977)
Q Consensus 175 -g--~~~~~~~L~V~~---~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g 248 (977)
| ..+..+.|.|.. +|.+...+ ...+.+|+.++|.|.+.+. .+.+.|+|+|..+.. ...++........
T Consensus 82 ~g~~~~s~~~~l~V~~~~~~p~i~~~~-~~~v~~G~~v~L~C~~~~~-~~~v~W~k~g~~~~~----~~~~~~~~~~~~~ 155 (198)
T 1ugn_A 82 AGRSESSDPLELVVTGAYIKPTLSAQP-SPVVNSGGNVTLQCDSQVA-FDGFILCKEGEDEHP----QCLNSQPHARGSS 155 (198)
T ss_dssp TEECCCCCCEEEEEECSSCCCEEEEES-CSEEETTCCEEEEEECSSC-CSEEEEEEC----------CEEEC------CC
T ss_pred CCcccCCccEEEEEcccccCCccccCC-ccccCCCCcEEEEEecCCC-CcEEEEEECCCccCC----ccccccccCCCcc
Confidence 5 345678888886 45555544 3688999999999999988 789999999986531 1111111111112
Q ss_pred ceEEEEeecccCCCCeEEEEEEEcCCC
Q psy574 249 MNLLKIQNVSRTAAPLIILCLGVNAAG 275 (977)
Q Consensus 249 ~s~L~I~~v~~~d~G~Y~~C~a~n~~g 275 (977)
...|.|.+++.+|+|.|+ |.|.|..+
T Consensus 156 ~~~L~i~~v~~~D~G~Y~-C~a~n~~~ 181 (198)
T 1ugn_A 156 RAIFSVGPVSPSRRWWYR-CYAYDSNS 181 (198)
T ss_dssp EEEEEECCCCTTSCEEEE-EEEECTTS
T ss_pred eeEEEecccCcccCeEEE-EEEEeCCC
Confidence 359999999999999999 99999876
No 236
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}
Probab=99.78 E-value=9.4e-18 Score=172.76 Aligned_cols=178 Identities=20% Similarity=0.330 Sum_probs=146.6
Q ss_pred CCCeEEeCCCceeecCCCcEEEEEEEcc--CceEEEEECCEEcCCC--CcEEEec---CceEEEeccCCCCCeEEEEEEE
Q psy574 292 PPPVILFGPANQTLPLRSEARLRCQVRG--EGSVQWWRGEREVGSG--PRVNVTG---DGSLVLTDVTKEDSGEYTCVVK 364 (977)
Q Consensus 292 ~pp~i~~~p~~~~v~~g~~~~L~C~~~~--~p~i~W~~~g~~l~~~--~~~~~~~---~~sl~I~~v~~~d~G~Y~C~a~ 364 (977)
.+|.| ..|.+..+..|+.+.|.|.+.+ .|.+.|+++|..+... .++.+.. .++|.|.++...|.|.|+|.|.
T Consensus 18 ~~P~~-~~p~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~ 96 (215)
T 3mtr_A 18 YAPKL-QGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAV 96 (215)
T ss_dssp EEEEE-ECCSEEEECTTCCEEEEEEEEEESCCEEEEEETTEESSCSSSCSEEEEEETTEEEEEECCCSGGGCEEEEEEEE
T ss_pred cCCcc-cCCceEEEECCCCEEEEEEEeecCCCEEEEEECCeECCCCCCccEEEecCCCeeEEEEecCChhhCeEEEEEEE
Confidence 36677 5677788999999999999999 7799999999998765 4555543 4579999999999999999999
Q ss_pred cCCCceEEEEEEEEECCCCCCCcccCCCCCCCCCCCCCCCeEEeeCCCceEEEEEcCCCCCCcccceEEEEEeecCCCCC
Q psy574 365 SPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSS 444 (977)
Q Consensus 365 n~~G~~~~s~~l~v~~~~~~~~~~~~~~~~~~~p~~P~~~~v~~~~~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~ 444 (977)
|..|.....+.|.+. ..|.+|..+.+. ....++.|+|..|...++.++..|.|+++.....
T Consensus 97 n~~g~~~~~~~l~v~----------------~~P~~p~~~~~~-~~~~~~~l~w~~p~~~~~~pi~~y~v~~~~~~~~-- 157 (215)
T 3mtr_A 97 NRIGQESLEFILVQA----------------DTPSSPSIDQVE-PYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEE-- 157 (215)
T ss_dssp CSSCEEEEEEEEEEC----------------CCCCCCEEEEEE-EETTEEEEEEECCSCCCSSCEEEEEEEEEETTCC--
T ss_pred ECCCceEEEEEEEEC----------------CCCCCCcceEEE-EecceEEEEEecCCccCCCceEEEEEEEEECCCC--
Confidence 999999888888886 346777776664 5567899999988876788999999999876544
Q ss_pred CCCCCCCcccEEEeceec----CcCeEEEEccCCCCeEEEEEEEEcCCCCCCCCCCCc
Q psy574 445 SPSGDTATATWVRVATNV----PSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSD 498 (977)
Q Consensus 445 ~~~~~~~~~~w~~~~~~~----~~~~~~i~~L~p~t~Y~~~V~a~n~~G~s~~S~~s~ 498 (977)
.|....... ....++|.+|.+++.|.|+|+|.|..|.|.+|....
T Consensus 158 ---------~w~~~~~~~~~~~~~~~l~i~~L~~~~~y~~~~~A~N~~G~s~~S~~~~ 206 (215)
T 3mtr_A 158 ---------VWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASE 206 (215)
T ss_dssp ---------CCEEEEEEHHHHHHHTEEEEECCCTTCEEEEEEEEEESSCBCCCCCCEE
T ss_pred ---------cccccccccccccccccEEECCCCCCCEEEEEEEEEeCCcccCccccee
Confidence 676654322 237899999999999999999999999999886554
No 237
>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...
Probab=99.78 E-value=1.9e-18 Score=177.55 Aligned_cols=171 Identities=17% Similarity=0.227 Sum_probs=126.2
Q ss_pred ceecccceEEeCCCcEEEEEECCCCCC---CCeEEEEeCC--EEee----------cCCCceEEEecC---cEEEEcCCC
Q psy574 8 FRVQPKSQRVAAGDTALLECGPPRGHP---EPTLVWKKNG--HPID----------FENSKRLRLVDG---TNLAIQDSR 69 (977)
Q Consensus 8 ~~~~p~~~~v~~G~~v~L~C~~~~g~P---~~~v~W~k~g--~~l~----------~~~~~r~~~~~~---g~L~I~~v~ 69 (977)
+.. |..+.+.+|++++|.|.+ .+.| .+.|.|+|++ ..+. .....|+.+..+ .+|.|.+++
T Consensus 4 v~~-p~~~~v~~G~~v~L~C~~-~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~ 81 (212)
T 1q0x_L 4 VTQ-ESALTTSPGETVTLTCRS-STGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGAQ 81 (212)
T ss_dssp EEE-CSEEEECTTCCEEEEEEE-SSSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCC
T ss_pred EEC-CCeEeecCCCCEEEEEEe-cccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEeeCCEEEEEECCCC
Confidence 445 889999999999999998 6666 4789999953 2221 122356665532 379999999
Q ss_pred CCCCeEEEEEEEecCceeeeEeEEEEEE----cCCeEEeCCCceEEeCCCeEEEEEEeccc-Cce-EEEEEECCeeCCCC
Q psy574 70 KTDDGRYQCVVKNVAGTRESTDAVLRVL----VKPYIIRGPKDTTVSASSIIVFECSVGGD-AVL-TVHWKRLGSAMPED 143 (977)
Q Consensus 70 ~~D~G~Y~C~a~n~~g~~~s~~~~l~V~----~~P~~~~~p~~~~v~~G~~v~l~C~v~g~-p~~-~i~W~k~~~~l~~~ 143 (977)
.+|+|.|+|.+.|..+......+.|.|. .+|.+...+....+..|+.++|.|.+.|. |.+ .|.|+|++..+..+
T Consensus 82 ~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~ 161 (212)
T 1q0x_L 82 TEDEAIYFCALWSNNKLVFGGGTKLTVLGQPKSSPTVTLFPPSSEELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTAG 161 (212)
T ss_dssp GGGCEEEEEEEECSSCEEECCCEEEEECCSCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTT
T ss_pred ccCCEEEEEEEecCchhhcCCCeEEEEecCCCCCCeeEEeCCCHHHccCCcEEEEEEEEEEeCCCeEEEEEECCEeCCCC
Confidence 9999999999999876544455677774 46777665544445679999999999875 443 89999999888654
Q ss_pred ceE----Eec------cceEEEccCccCCCeEEEEEEEeCCeeEEEE
Q psy574 144 RMS----VLP------SRSLQLSDVRLEDAGEYVCEAENAVGKISAS 180 (977)
Q Consensus 144 ~~~----~~~------~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~ 180 (977)
... ... ...|.|.++..+|+|.|+|.|.|........
T Consensus 162 ~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~ 208 (212)
T 1q0x_L 162 METTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHSSNKT 208 (212)
T ss_dssp EEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTEEEEEE
T ss_pred eecCCceeCCCCCEEEEEEEEEcHHHccCCCcEEEEEEeCCcceeee
Confidence 211 111 2368999999999999999999987654444
No 238
>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}
Probab=99.78 E-value=2.6e-18 Score=176.69 Aligned_cols=175 Identities=17% Similarity=0.239 Sum_probs=131.5
Q ss_pred cccceEEeCCCcEEEEEECCCCCCCC---eEEEEeCCEEee----------------cCCCceEEEec------CcEEEE
Q psy574 11 QPKSQRVAAGDTALLECGPPRGHPEP---TLVWKKNGHPID----------------FENSKRLRLVD------GTNLAI 65 (977)
Q Consensus 11 ~p~~~~v~~G~~v~L~C~~~~g~P~~---~v~W~k~g~~l~----------------~~~~~r~~~~~------~g~L~I 65 (977)
.|..+.+.+|++++|.|.+ .+.|.+ .|.|+|++..+. .....|+.+.. +++|.|
T Consensus 5 ~p~~vtv~~G~~v~L~C~v-~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I 83 (218)
T 4frw_A 5 TSDVVTVVLGQDAKLPCFY-RGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLL 83 (218)
T ss_dssp CCSEEEEETTSCEEECCEE-CCCTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEEE
T ss_pred CCCeEEEEcCCCEEEEEEE-EcCCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEEE
Confidence 4667999999999999999 666655 489999775432 11123444332 356999
Q ss_pred cCCCCCCCeEEEEEEEecCceeeeEeEEEEEEcCC-eEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCc
Q psy574 66 QDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKP-YIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDR 144 (977)
Q Consensus 66 ~~v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V~~~P-~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~ 144 (977)
.+++.+|+|.|+|.+.+..+........+.+..++ .....+....+..|+.+.+.|.+.|.|.+.|.|+|++..+....
T Consensus 84 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~p~p~i~W~~~~~~~~~~~ 163 (218)
T 4frw_A 84 RNAVQADEGEYECRVSTFPAGSFQARLRLRVLVPPLPSLNPGPALEEGQGLTLAASCTAEGSPAPSVTWDTEVKGTTSSR 163 (218)
T ss_dssp SSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCCCEEEECSCEETTCCSEEEEEEEEEEBSCCEEEEEESSCCEEEEE
T ss_pred eeccHHHCCceeEEEEeccCceeeeEEEEEEeeeccceeeeeeeeeeeeccccceeeeccCCcCceEEEEECCcccccCc
Confidence 99999999999999998776655555566665544 33444556677889999999999999999999999988775433
Q ss_pred eEEe-----ccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEEe
Q psy574 145 MSVL-----PSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQ 186 (977)
Q Consensus 145 ~~~~-----~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~ 186 (977)
.... ..+.|.|.++..+|.|.|+|.|.|..|..+..+.+.|.
T Consensus 164 ~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g~~~~~~t~~v~ 210 (218)
T 4frw_A 164 SFKHSRSAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQDQRITHILH 210 (218)
T ss_dssp EEECSSSEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECC
T ss_pred eEecCCcEEEEEEEEEeeCCHHhCeEEEEEEEeCCCCeEEEEEEEEE
Confidence 2221 23479999999999999999999999876666666554
No 239
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A
Probab=99.78 E-value=1.7e-18 Score=179.89 Aligned_cols=178 Identities=16% Similarity=0.214 Sum_probs=123.1
Q ss_pred ccee-ccc-ceEEeCCCcEEEEEECCCCCCC---CeEEEEeCCEE-----------ee----cCCCceEEEec------C
Q psy574 7 EFRV-QPK-SQRVAAGDTALLECGPPRGHPE---PTLVWKKNGHP-----------ID----FENSKRLRLVD------G 60 (977)
Q Consensus 7 ~~~~-~p~-~~~v~~G~~v~L~C~~~~g~P~---~~v~W~k~g~~-----------l~----~~~~~r~~~~~------~ 60 (977)
+|.+ .|. .+.+.+|++|+|.|.+ .+.|. ..|.|+|++.. +. .....|+.... +
T Consensus 4 Qf~V~~P~~pV~v~~G~~v~L~C~v-~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~ 82 (226)
T 4f80_A 4 QFSVLGPSGPILAMVGEDADLPCHL-FPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGK 82 (226)
T ss_dssp CCEEECCSSCEEEETTSCEEEEEEE-ESCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEECTTGGGTE
T ss_pred eEEEECCCCCEEEEcCCcEEEEEEE-ECCCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEEecccccCCe
Confidence 4555 344 4889999999999988 44443 37999987632 21 11233444432 2
Q ss_pred cEEEEcCCCCCCCeEEEEEEEecCceeeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEecc-cCceEEEEEECCee
Q psy574 61 TNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGG-DAVLTVHWKRLGSA 139 (977)
Q Consensus 61 g~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~g-~p~~~i~W~k~~~~ 139 (977)
.+|.|.+++.+|+|.|+|.|.|..|... +.+.+..++.+...+....+.+|+.+.|.|.+.| .|.|.|.|+|+++.
T Consensus 83 ~~L~I~~v~~~D~G~Y~C~a~n~~~~~~---~~v~~~~~~~~~~~~~~~~~~~g~~v~l~c~~~g~~P~p~i~W~k~~~~ 159 (226)
T 4f80_A 83 AALRIHNVTASDSGKYLCYFQDGDFYEK---ALVELKVAALGSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGE 159 (226)
T ss_dssp EEEEESSCCGGGCEEEEEEEEETTEEEE---EEEEEEEEBCCCCCEEEEEEEETTEEEEEEEEEEEBSCCEEEEECTTSC
T ss_pred EEEEEeeCchHHCeeEEEEEECCCcEEE---EEEEEeeccceecccceeeeccCCceeeEEEeccCCCCCEEEEEECCce
Confidence 4799999999999999999999877533 3455555555555556668889999999999977 59999999997654
Q ss_pred -CCCCce--EEeccce---EEEccCccCCCeEEEEEEEeCCeeEEEEEEEEEeeC
Q psy574 140 -MPEDRM--SVLPSRS---LQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMA 188 (977)
Q Consensus 140 -l~~~~~--~~~~~~~---L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~~~ 188 (977)
++.... ....++. +.+.+++.+|+|.|+|.|.|..|..++.+.|.|..|
T Consensus 160 ~~~~~~~~~~~~~~g~~~v~s~l~v~~~d~G~YtC~a~N~~g~~~~~~~v~v~ep 214 (226)
T 4f80_A 160 NIPTVEAPVVADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLGLEKTASISIADP 214 (226)
T ss_dssp BCCCEECCCEECTTSCEEEEEEEEECC----CEEEEEEETTTTEEEEEEECCCTT
T ss_pred EcCCCceEEEECCCCcEEEEEEEEechhcCcEEEEEEEeCCCCeEEEEEEEECCC
Confidence 333222 2223332 345567889999999999999999889998888643
No 240
>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H
Probab=99.78 E-value=2.5e-18 Score=182.26 Aligned_cols=178 Identities=20% Similarity=0.288 Sum_probs=134.2
Q ss_pred eecccceEEeCCCcEEEEEECCCCCC--CCeEEEEeC--CEEee---------------cCCCceEEEecC-----cEEE
Q psy574 9 RVQPKSQRVAAGDTALLECGPPRGHP--EPTLVWKKN--GHPID---------------FENSKRLRLVDG-----TNLA 64 (977)
Q Consensus 9 ~~~p~~~~v~~G~~v~L~C~~~~g~P--~~~v~W~k~--g~~l~---------------~~~~~r~~~~~~-----g~L~ 64 (977)
..+|.++.+.+|++|+|.|.+ .+.| .+.|.|+|+ +..+. .....|+.+..+ .+|.
T Consensus 4 l~~p~~~~v~~G~~v~L~C~~-~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~ 82 (256)
T 1nqb_A 4 LQQSGAELVKPGASVKLSCKA-SGYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKPSSTAYMQ 82 (256)
T ss_dssp EEECCCEEECTTCCEEEEEEE-CSSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEE
T ss_pred EECCCCeeecCCCcEEEEEEe-ccccCCCceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEecCCCEEEEE
Confidence 456778999999999999998 6664 679999994 32221 012357776532 4799
Q ss_pred EcCCCCCCCeEEEEEEEecCce----eeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEecccCce-----EEEEEE
Q psy574 65 IQDSRKTDDGRYQCVVKNVAGT----RESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVL-----TVHWKR 135 (977)
Q Consensus 65 I~~v~~~D~G~Y~C~a~n~~g~----~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~-----~i~W~k 135 (977)
|.+++.+|+|.|+|.+.|..|. .....+.|.|..+|.+...|....+.+|++++|.|.+.+.|.+ .+.|+|
T Consensus 83 I~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k 162 (256)
T 1nqb_A 83 LSSLTSEDSAVYYCARYDYYGSSYFDYWGQGTTVTVSSDIELTQTPLSLPVSLGDQASISCRSSQSIVHSNGNTYLEWYL 162 (256)
T ss_dssp ECSCCGGGCEEEEEEECCTTSSSSCSEECCCEEEEECCCCCEEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEE
T ss_pred ECcCChhhCEEEEEEEeeccCccceeEEcCceeeeecccccEEecCcEEEEecCCcEEEEeEecCcccccccceEEEEEE
Confidence 9999999999999999988652 2234568889888888888888899999999999999888765 999999
Q ss_pred --CCeeCC-------------CCceEEe---ccceEEEccCccCCCeEEEEEEEeCCee-EEEEEEEEEee
Q psy574 136 --LGSAMP-------------EDRMSVL---PSRSLQLSDVRLEDAGEYVCEAENAVGK-ISASATLTVQM 187 (977)
Q Consensus 136 --~~~~l~-------------~~~~~~~---~~~~L~I~~v~~~D~G~Y~C~a~n~~g~-~~~~~~L~V~~ 187 (977)
++..+. ..++... ...+|.|.+++.+|+|.|+|.|.|.... ......|.|..
T Consensus 163 ~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V~~ 233 (256)
T 1nqb_A 163 QKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSHVPYTFGGGTKLEIKR 233 (256)
T ss_dssp ECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECC
T ss_pred ECCCCCcEEEEEEeCCCCCccCCcEEEEccCCEEEEEECCCChHHCEEEEEEEccCCceEECCCEEEEEEC
Confidence 554331 2344443 2357999999999999999999985432 33455677763
No 241
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}
Probab=99.78 E-value=1.5e-18 Score=175.90 Aligned_cols=168 Identities=15% Similarity=0.195 Sum_probs=128.0
Q ss_pred cCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceEE---eccceEEEccCccCCCeEEEEEEEeCC
Q psy574 98 VKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSV---LPSRSLQLSDVRLEDAGEYVCEAENAV 174 (977)
Q Consensus 98 ~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~---~~~~~L~I~~v~~~D~G~Y~C~a~n~~ 174 (977)
.+|.+...|.. .+.+|++++|.|.+.+ +.+.+.|+|++..+....... ...+.|.|.+++.+|+|.|+|.|.|..
T Consensus 4 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~ 81 (196)
T 3p2t_A 4 PKPTLWAEPGS-VISWGNSVTIWCQGTL-EAREYRLDKEESPAPWDRQNPLEPKNKARFSIPSMTEDYAGRYRCYYRSPV 81 (196)
T ss_dssp CCCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTSCSCSEEECCCSSSSEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred CCCEEEccCCC-cCCCCCcEEEEeeCCC-CCCEEEEEECCCCCcccccccccCCceEEEEeccCCcccCceEEEEEeCCC
Confidence 46777777777 8899999999999988 678999999998876422111 245789999999999999999999998
Q ss_pred ee--EEEEEEEEEee---CCeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCccccEEEEEccCCc
Q psy574 175 GK--ISASATLTVQM---APIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGM 249 (977)
Q Consensus 175 g~--~~~~~~L~V~~---~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~ 249 (977)
|. .+..+.|.|.. +|.+...+.. .+.+|+.++|.|.+.+. .+.+.|+|+|..+... ........ ....
T Consensus 82 g~~~~s~~~~l~V~~~~~~p~~~~~~~~-~v~~G~~v~L~C~~~~~-~~~~~w~k~g~~~~~~----~~~~~~~~-~~~~ 154 (196)
T 3p2t_A 82 GWSQPSDPLELVMTGAYSKPTLSALPSP-LVTSGKSVTLLCQSRSP-MDTFLLCKERAAHPLL----CLRSEHGA-QQHQ 154 (196)
T ss_dssp EEBCCCCCEEEEEECSSCCCEEEEESCS-EECTTCCEEEEEEEEEE-EEEEEEEETTCCCGGG----SEEEEEEE-EEEE
T ss_pred cccCCCccEEEEecCCCCCCEEEeCCcc-eecCCCeEEEEEecCCC-CCEEEEEeCCCcccce----eecccccc-cCcc
Confidence 83 45667788863 4566655554 78899999999999874 5689999999765321 11111110 0122
Q ss_pred eEEEEeecccCCCCeEEEEEEEcCCC
Q psy574 250 NLLKIQNVSRTAAPLIILCLGVNAAG 275 (977)
Q Consensus 250 s~L~I~~v~~~d~G~Y~~C~a~n~~g 275 (977)
..|.|.+++.+|+|.|+ |.|.|..+
T Consensus 155 ~~L~i~~v~~~d~G~Y~-C~a~n~~~ 179 (196)
T 3p2t_A 155 AEFPMSPVTSVHGGTYR-CFSSHGFS 179 (196)
T ss_dssp EEEEECSCCGGGCEEEE-EEEECGGG
T ss_pred eEEEeCCCcccCCCeEE-EEEEcCCC
Confidence 48999999999999999 99999876
No 242
>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins, protein-protein interactions, C-type lectin domain; 2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1
Probab=99.78 E-value=1.9e-17 Score=178.47 Aligned_cols=170 Identities=16% Similarity=0.174 Sum_probs=139.8
Q ss_pred ceEEEEEeeEeCCCeEEEEEEecCCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeecce
Q psy574 545 SLIELTEVKPMTSTSVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSV 624 (977)
Q Consensus 545 ~~~~~l~~~~~~~tsv~lsW~~p~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g 624 (977)
.+|.++++...+.+++.|+|++|. +.+.+|.|+|+.......|....+ .....++.|.+|.|++.|.|+|+|.|..|
T Consensus 16 ~~P~~l~~~~~~~~sv~l~W~~~~-~~~~~Y~v~~~~~~~~~~~~~~~~--~~~~~~~~i~~L~p~t~Y~~~V~a~~~~g 92 (283)
T 1tdq_A 16 DGPTQILVRDVSDTVAFVEWTPPR-AKVDFILLKYGLVGGEGGKTTFRL--QPPLSQYSVQALRPGSRYEVSISAVRGTN 92 (283)
T ss_dssp CCCEEEEEEEECSSCEEEEEECCS-SCCSEEEEEEEESSSSCCCEEEEE--CTTCSEEEECSCCTTCEEEEEEEEEETTE
T ss_pred CCCcEEEEEecCCCeEEEEEECCC-CceeEEEEEEEEecCCCCcEEEEe--CCCCCEEEecCCCCCCEEEEEEEEECCCC
Confidence 345789999999999999999997 678999999987765566644433 36788999999999999999999999998
Q ss_pred eCCCCCceEEeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCcceEEEEecCC---cCeE
Q psy574 625 DGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSAS---TPTL 701 (977)
Q Consensus 625 ~g~~s~~~~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~~~~~~~~~~~---~~~~ 701 (977)
.+.. ....+.|. | .+|.++++...+.+++.|+|++|. +.+.+|.|+|+..+........+..+ .+++
T Consensus 93 ~s~~-~~~~~~t~---p-~~P~~l~~~~~~~~sv~l~W~~p~-----~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (283)
T 1tdq_A 93 ESDA-SSTQFTTE---I-DAPKNLRVGSRTATSLDLEWDNSE-----AEAQEYKVVYSTLAGEQYHEVLVPKGIGPTTKT 162 (283)
T ss_dssp ECCC-EEEEEECC---C-CCCEEEEEEEECSSCEEEEEECCS-----SCCSEEEEEEEETTCCCCEEEEEECCSSSEEEE
T ss_pred CCCC-eeEEEECC---C-CCCCceEEEecCCCeEEEEecCCC-----CCccEEEEEEEeCCCCcceEEECCCCCcccceE
Confidence 8753 33555553 3 477899999989999999999983 67999999998865444445566666 8899
Q ss_pred EecCCCCCceEEEEEEEEcCCCcCCC
Q psy574 702 LLTNLSAGIRYSVSLAATNRAGTGPY 727 (977)
Q Consensus 702 ~l~~L~p~t~Y~~~V~A~~~~G~g~~ 727 (977)
+|.+|+|++.|.|+|+|+|..|.|..
T Consensus 163 ~i~~L~p~t~Y~~~V~A~n~~g~s~~ 188 (283)
T 1tdq_A 163 TLTDLVPGTEYGVGISAVMNSKQSIP 188 (283)
T ss_dssp EECSCCTTCEEEEEEEEEETTEECCC
T ss_pred EEecCCCCCEEEEEEEEEeCCCCCcc
Confidence 99999999999999999999887653
No 243
>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A
Probab=99.78 E-value=4.3e-18 Score=178.34 Aligned_cols=166 Identities=17% Similarity=0.325 Sum_probs=124.2
Q ss_pred cceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeC--CEEe-------------ecCCCceEEEec----CcEEEEcC
Q psy574 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKN--GHPI-------------DFENSKRLRLVD----GTNLAIQD 67 (977)
Q Consensus 7 ~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~--g~~l-------------~~~~~~r~~~~~----~g~L~I~~ 67 (977)
.+.+.|.++.+.+|++|+|.|.. +.|.+.|.|+|+ +..+ ......|+.+.. +.+|.|.+
T Consensus 2 ~v~q~p~~~~v~~G~~v~L~C~~--~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~ 79 (238)
T 2p1y_A 2 AVTQSPRNKVAVTGGKVTLSCNQ--TNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENFSLILEL 79 (238)
T ss_dssp CEEEECSEEEEETTCCEEEEEEE--CSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEECCSSSBCEEEESS
T ss_pred cceECccceEEeCCCEEEEEeec--CCCCccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEccCCceEEEEEec
Confidence 46678889999999999999993 678899999995 2211 011234666653 34799999
Q ss_pred CCCCCCeEEEEEEEecCce----eeeEeEEEEEEcCC------------eEEeCCCceEEeCCCeEEEEEEecccCceEE
Q psy574 68 SRKTDDGRYQCVVKNVAGT----RESTDAVLRVLVKP------------YIIRGPKDTTVSASSIIVFECSVGGDAVLTV 131 (977)
Q Consensus 68 v~~~D~G~Y~C~a~n~~g~----~~s~~~~l~V~~~P------------~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i 131 (977)
++.+|+|.|+|.+.|..|. .....+.|.|...+ .+...|....+.+|++++|.|.+.+.|.+.+
T Consensus 80 v~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~~~p~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i 159 (238)
T 2p1y_A 80 ATPSQTSVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQSPQSLTVWEGETAILNCSYENSAFDYF 159 (238)
T ss_dssp CCGGGCEEEEEEEEC------CEEECCCEEEEEECCCHHHHHHHHHHHTCCEEECSEEEEETTSCEEEEEECCCTTCCEE
T ss_pred CCcccCeeEEEEEEeCCCccccceeCCCeEEEEeccCCCCcCCcccceeeEEccCceEEEeCCCeEEEEEEEecCCCCcE
Confidence 9999999999999987542 11234577887543 5666788889999999999999999999999
Q ss_pred EEEECCe--eC-------------CCCceEEec-----cceEEEccCccCCCeEEEEEEEeCC
Q psy574 132 HWKRLGS--AM-------------PEDRMSVLP-----SRSLQLSDVRLEDAGEYVCEAENAV 174 (977)
Q Consensus 132 ~W~k~~~--~l-------------~~~~~~~~~-----~~~L~I~~v~~~D~G~Y~C~a~n~~ 174 (977)
.|+|++. .. ..+++.+.. ..+|.|.+++.+|+|.|+|.|.|..
T Consensus 160 ~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~ 222 (238)
T 2p1y_A 160 PWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYFCAAIDTN 222 (238)
T ss_dssp EEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEETTCCGGGCEEEEEEEEETT
T ss_pred EEEEECCCCCCEEEEEEccCCCcccCCceEEEecCCCCeEEEEEcCCCHHHCEEEEEEEeeCC
Confidence 9999742 11 124444431 3589999999999999999999973
No 244
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A
Probab=99.78 E-value=2.3e-18 Score=177.07 Aligned_cols=171 Identities=22% Similarity=0.307 Sum_probs=125.1
Q ss_pred ecccceEEeCCCcEEEEEECCCC------CCCCeEEEEeCCEE------ee---------cCCCceEEEec-----CcEE
Q psy574 10 VQPKSQRVAAGDTALLECGPPRG------HPEPTLVWKKNGHP------ID---------FENSKRLRLVD-----GTNL 63 (977)
Q Consensus 10 ~~p~~~~v~~G~~v~L~C~~~~g------~P~~~v~W~k~g~~------l~---------~~~~~r~~~~~-----~g~L 63 (977)
..|..+.+.+|++|+|.|.+... .+.+.|.|+|++.. +. ....+|+.+.. +++|
T Consensus 5 ~~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL 84 (214)
T 2zg1_A 5 QVQKSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSL 84 (214)
T ss_dssp ECCSEEEEETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCGGGTBCCE
T ss_pred eCCcEEEEecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEEeccCCCCeEEE
Confidence 34788999999999999998322 25789999998752 11 12346777754 2479
Q ss_pred EEcCCCCCCCeEEEEEEEecCceee---eEeEEEEEEcC---CeEEeCCCceEEeCCCeEEEEEEecc----cCceEEEE
Q psy574 64 AIQDSRKTDDGRYQCVVKNVAGTRE---STDAVLRVLVK---PYIIRGPKDTTVSASSIIVFECSVGG----DAVLTVHW 133 (977)
Q Consensus 64 ~I~~v~~~D~G~Y~C~a~n~~g~~~---s~~~~l~V~~~---P~~~~~p~~~~v~~G~~v~l~C~v~g----~p~~~i~W 133 (977)
.|.+++.+|+|.|+|.+.+..+... +..+.|.|..+ |.+.. +. .+.+|+.++|.|.+.| .|.+.+.|
T Consensus 85 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~p~i~~-~~--~~~~G~~v~L~C~~~~~~~~~p~p~v~W 161 (214)
T 2zg1_A 85 SIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHF-LE--PLESGRPTRLSCSLPGSCEAGPPLTFSW 161 (214)
T ss_dssp EECSCCGGGCEEEEEEEEETTTEEEECCSSCEEEEEECCCCCCEEC---C--CCCTTCCEEEEEECTTCCSCSSCCEEEE
T ss_pred EEccCCHhhCceEEEEEEcCCCceeeecCCceEEEEecCCCCCceec-Cc--cccCCCeEEEEEEeccCCCCCCCceEEE
Confidence 9999999999999999998764332 24678888864 44433 32 2679999999999976 48899999
Q ss_pred EECCeeCCCCceEEeccceEEEccCccCCCeEEEEEEEeCCee--EEEEEEEEE
Q psy574 134 KRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGK--ISASATLTV 185 (977)
Q Consensus 134 ~k~~~~l~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~--~~~~~~L~V 185 (977)
+|++..+...+. ...+.|.|..+..+|.|.|+|.|.|..+. .++.+.|.|
T Consensus 162 ~~~~~~~~~~~~--~~~~~L~i~~~~~~~~g~Y~C~a~n~~~~~~~~~~v~l~V 213 (214)
T 2zg1_A 162 TGNALSPLDPET--TRSSELTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQLNV 213 (214)
T ss_dssp ESSTTSSSCSSC--CCSSEEEECCCTTCCSCEEEEEEECC----CCEEEEECCC
T ss_pred eCCCCccCCCCc--eeEEEEEEecccHHcCcEEEEEEEeCCCCcceEEEEEEEe
Confidence 999876543322 35678999999999999999999997654 445555544
No 245
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.78 E-value=3.5e-18 Score=171.14 Aligned_cols=169 Identities=22% Similarity=0.365 Sum_probs=136.1
Q ss_pred eEEeCCCeEEEEEEecccCce--EEEEEECCeeCCCCceEEeccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEEe
Q psy574 109 TTVSASSIIVFECSVGGDAVL--TVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQ 186 (977)
Q Consensus 109 ~~v~~G~~v~l~C~v~g~p~~--~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~ 186 (977)
..+.+|++++|.|.+.+.|.+ .+.|+|++..+...... .....|.|. ..+|+|.|+|.|.|.. ...+.|.|.
T Consensus 8 ~~v~~G~~v~l~C~~~~~~~p~~~~~W~k~~~~l~~~~~~-~~~~~l~i~--~~~d~G~Y~C~~~n~~---~~~~~l~V~ 81 (184)
T 3b5h_A 8 TVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALP-GQKTEFKVD--SDDQWGEYSCVFLPEP---MGTANIQLH 81 (184)
T ss_dssp EEEEETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCC-CSEEEEEEC--GGGCCEEEEEEEESTT---SCEEEEEEC
T ss_pred EEEecCCCEEEEEECCCCCCCceEEEEEeCCEEeeccccc-CCcEEEEEe--chhhCeEEEEEEECCc---CcEEEEEEe
Confidence 467899999999999887777 99999999887654321 123456666 6899999999999832 367789999
Q ss_pred eCCeEEecCCCcEEeeCCeEEEEEEEecCC-CCeEEEEE---cCeeeeecCCCccccEEEEEccCCceEEEEeecc-cCC
Q psy574 187 MAPIVRERPSDLRLEVGRDAVFLCGIEGSP-PPSTFWML---EGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVS-RTA 261 (977)
Q Consensus 187 ~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p-~~~i~W~~---~g~~~~~~~~~~~~~~~~~~~~~g~s~L~I~~v~-~~d 261 (977)
.+|.+...+....+.+|+.++|.|.+.+.| .+.+.|++ ++..... ....+++.+... .+.+.|.|.+++ .+|
T Consensus 82 ~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~i~W~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~L~i~~v~~~~d 158 (184)
T 3b5h_A 82 GPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALM--NGSESRFFVSSS-QGRSELHIENLNMEAD 158 (184)
T ss_dssp CSCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECC--TTGGGTEEEEEE-TTEEEEEECSCCTTTS
T ss_pred cCCceeecCCCcEEcCCCcEEEEEEECCCCCCCeEEEEEcCCCCCEEee--cCCCCEEEEEec-CCeeEEEEeecccccc
Confidence 999998888888899999999999999999 79999999 5555432 123467777654 345799999999 899
Q ss_pred CCeEEEEEEEcCCCceeEEEEEEEEC
Q psy574 262 APLIILCLGVNAAGSDLARASLTVSG 287 (977)
Q Consensus 262 ~G~Y~~C~a~n~~g~~~~~~~l~V~~ 287 (977)
.|.|+ |.|.|..|.....+.|.|..
T Consensus 159 ~G~Y~-C~a~N~~g~~~~~~~l~V~~ 183 (184)
T 3b5h_A 159 PGQYR-CNGTSSKGSDQAIITLRVRS 183 (184)
T ss_dssp SEEEE-EEEEETTEEEEEEEEEEEC-
T ss_pred CceEE-EEEEeCCCcceEEEEEEEec
Confidence 99999 99999999998888888864
No 246
>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A
Probab=99.78 E-value=2.5e-18 Score=175.12 Aligned_cols=164 Identities=18% Similarity=0.211 Sum_probs=122.4
Q ss_pred ccccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCC-ceEE-EecCcEEEEcCCCCCCCeEEEEEEE
Q psy574 4 LREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENS-KRLR-LVDGTNLAIQDSRKTDDGRYQCVVK 81 (977)
Q Consensus 4 l~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~-~r~~-~~~~g~L~I~~v~~~D~G~Y~C~a~ 81 (977)
-+|.|...|. ..+.+|++++|.|.+ . .|.+.+.|+|||..+..... .+.. ...++.|.|.+++.+|+|.|+|.+.
T Consensus 7 ~~P~i~~~p~-~~v~~G~~v~L~C~~-~-~~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~ 83 (201)
T 1nkr_A 7 RKPSLLAHPG-PLVKSEETVILQCWS-D-VMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGS 83 (201)
T ss_dssp CCCEEEEESC-SEEETTCCEEEEEEE-S-SCCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEE
T ss_pred CCCeEEEEcC-CccCCCCcEEEEEec-c-CCCCEEEEEECCCcCCcceeeeecCCCCceEEEEeccCCcccCeEEEEeEe
Confidence 3567788886 779999999999998 3 47789999999987632110 0111 1234679999999999999999998
Q ss_pred ecC----ceeeeEeEEEEEEc---CCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCc--eEEe---c
Q psy574 82 NVA----GTRESTDAVLRVLV---KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDR--MSVL---P 149 (977)
Q Consensus 82 n~~----g~~~s~~~~l~V~~---~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~--~~~~---~ 149 (977)
+.. ....+..+.|.|.. +|.+...|. ..+.+|++++|.|.+.+ +.+.+.|+|++..+.... .... .
T Consensus 84 ~~~~~~~~~~~s~~~~l~V~~~~~~p~i~~~p~-~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~ 161 (201)
T 1nkr_A 84 VTHSPYQVSAPSDPLDIVIIGLYEKPSLSAQPG-PTVLAGENVTLSCSSRS-SYDMYHLSREGEAHERRLPAGPKVNGTF 161 (201)
T ss_dssp BTTBTTCCCCCCCCEEEEEECSSCCCEEEEESC-SEECTTCEEEEEEEESS-CCSEEEEEETTCSSCEEEECEEEETTEE
T ss_pred cCCCCccccCCCCCEEEEeeccCCCCceecCCC-CccCCCCeEEEEEeCCC-CCceEEEEECCcccCcccccccccCCce
Confidence 753 12335667888875 467766665 57899999999999976 467899999998775321 1111 2
Q ss_pred cceEEEccCccCCCeEEEEEEEeCC
Q psy574 150 SRSLQLSDVRLEDAGEYVCEAENAV 174 (977)
Q Consensus 150 ~~~L~I~~v~~~D~G~Y~C~a~n~~ 174 (977)
+..|.|.+++ |+|.|+|.|.+..
T Consensus 162 ~~~L~i~~v~--d~G~Y~C~a~~~~ 184 (201)
T 1nkr_A 162 QADFPLGPAT--HGGTYRCFGSFHD 184 (201)
T ss_dssp EEEEEEEECC--SCEEEEEEEEETT
T ss_pred EEEEEeCCcC--CCeeEEEEEEcCC
Confidence 5689999998 9999999999764
No 247
>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin type III domain, alternative cell membrane, disulfide bond; 1.90A {Homo sapiens} PDB: 3l5j_A
Probab=99.78 E-value=1.4e-17 Score=180.14 Aligned_cols=222 Identities=17% Similarity=0.185 Sum_probs=161.3
Q ss_pred EEeccCCCCCeEEEEEEEcCCCceEEEEEEEEECCCCCCCcccCCCCCCCCCCCCCCCeEEeeCCCceEEEEEcCCCCCC
Q psy574 347 VLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGS 426 (977)
Q Consensus 347 ~I~~v~~~d~G~Y~C~a~n~~G~~~~s~~l~v~~~~~~~~~~~~~~~~~~~p~~P~~~~v~~~~~~sv~lsW~~p~~~~~ 426 (977)
.+..+.+...+.|++.|.|..|.+..+. +.+... ....|.++.++.+.... +++.|+|.++..
T Consensus 64 ~~~~l~p~t~Y~~~V~A~n~~G~s~~s~-~~~~~~------------~~~~~~p~~~~~~~~~~-~si~l~W~~p~~--- 126 (290)
T 3l5i_A 64 KLTVNLTNDRYLATLTVRNLVGKSDAAV-LTIPAC------------DFQATHPVMDLKAFPKD-NMLWVEWTTPRE--- 126 (290)
T ss_dssp EEEEEECSSCEEEEEEEEESSCBCCCEE-EEECCT------------TCCCCCCCEEEEEEEET-TEEEEEEECCSS---
T ss_pred EEEEEcCCceEEEEEEEEcCCCCCCCce-EEeecc------------cccCCCccceeEEEeCC-CeEEEEEeCCCC---
Confidence 4566777789999999999999775442 222211 01246666777776665 699999999864
Q ss_pred cccceEEEEEeecCCCCCCCCCCCCcccEEEeceecCcCeEEEEccCCCCeEEEEEEEEcCCCCCCCCCCCceEEeeccc
Q psy574 427 SSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTF 506 (977)
Q Consensus 427 ~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~G~s~~S~~s~~~~~~~~~ 506 (977)
.+.+|.|+|+...... .....|.... ......+.+.+|.|++.|.|+|+|.|..|.|.++ .....+....
T Consensus 127 -~i~~Y~v~~~~~~~~~------~~~~~~~~~~-~~~~~~~~~~~L~p~t~Y~~~V~A~n~~g~g~~~--~~~~~t~~~~ 196 (290)
T 3l5i_A 127 -SVKKYILEWCVLSDKA------PCITDWQQED-GTVHRTYLRGNLAESKCYLITVTPVYADGPGSPE--SIKAYLKQAP 196 (290)
T ss_dssp -CCCEEEEEEEEECSSS------CCCCEEEEEE-TTCSEEECCSCCCTTCEEEEEEEEEETTEECCCE--EEEEESSCCC
T ss_pred -CCCcEEEEEEECCCCC------CCCcCeEEcc-CCCcceEEecCcCCccEEEEEEEEEeCCcccccE--EEEeEccccC
Confidence 7899999998765432 0112576653 4455677889999999999999999999988642 1222221222
Q ss_pred cccccccCCcceeecCCCCCCCcchHHHHhhcccccCCceEEEEEeeEeCCCeEEEEEEec----CCCccceEEEEEEec
Q psy574 507 SEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPMTSTSVKLTWEIL----NTDYIEGVYIYSRGL 582 (977)
Q Consensus 507 p~~~p~~~~~~~~~~~P~~~~~g~~~~~~~~~l~~~~~~~~~~l~~~~~~~tsv~lsW~~p----~~~~i~~Y~v~y~~~ 582 (977)
| . .| ..+.+...+.++|.|+|+++ .++.|.+|+|+|+..
T Consensus 197 P----~---------~~------------------------p~~~~~~~~~~sv~l~W~~~~~~~~~g~i~~Y~v~~~~~ 239 (290)
T 3l5i_A 197 P----S---------KG------------------------PTVRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTIFYRTI 239 (290)
T ss_dssp C----S---------SC------------------------CCEEEEEECSSCEEEEECCCCHHHHSSCCCEEEEEEEET
T ss_pred C----C---------CC------------------------CeeeEeeccCCEEEEEEcCCChhccCCEEEEEEEEEEeC
Confidence 2 1 11 13667889999999999944 678899999999987
Q ss_pred CCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeecceeCCCCCceEEecc
Q psy574 583 DPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVRTL 637 (977)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~g~~s~~~~~~T~ 637 (977)
+. .+....+ ....++++|.+|.|++.|.|+|+|.|..| |+.|..+.|+|.
T Consensus 240 ~~--~~~~~~~--~~~~~~~~~~~L~p~t~Y~~~V~A~n~~G-g~~s~~~~~~T~ 289 (290)
T 3l5i_A 240 IG--NETAVNV--DSSHTEYTLSSLTSDTLYMVRMAAYTDEG-GKDGPEFTFTTP 289 (290)
T ss_dssp TS--CCEEEEE--ETTCSEEEECSCCTTCEEEEEEEEEETTE-EEECCCEEEECC
T ss_pred CC--CeEEEEe--CCCceEEEeCCCCCCCEEEEEEEEEeCCC-CCCCCceEeecC
Confidence 63 3433332 36788999999999999999999999999 888999999886
No 248
>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}
Probab=99.77 E-value=1.7e-18 Score=183.42 Aligned_cols=206 Identities=18% Similarity=0.243 Sum_probs=127.6
Q ss_pred CccCCCeEEEEEEEeCCeeEEEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEEecCC-----CCeEEEEEcC--eeee
Q psy574 158 VRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSP-----PPSTFWMLEG--NRSL 230 (977)
Q Consensus 158 v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p-----~~~i~W~~~g--~~~~ 230 (977)
++.+|+|.|+|.|. |.....+.+.+..++.+...|....+.+|++++|.|.+.+.+ .+.+.|+|++ ..+.
T Consensus 11 v~~~dsg~Y~C~a~---g~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~ 87 (254)
T 2c1o_A 11 VRPGTSVKLSCKAS---GYSFTNYWMNWLRELVMTQSPLTLSVTIGQPASISCKSSQSLLYSNGKTYLNWLLQRPGQSPK 87 (254)
T ss_dssp ------------------------------CCCEEEECSEEEECTTSCEEEEEEESSCCBCSSSCBCEEEEEECTTSCCE
T ss_pred ecCCccEEEEEcCc---hhhhhhhhhheeeceeEEeCCceEEecCCCcEEEEeeccCcccccCCCCceEEEEeCCCCCce
Confidence 78899999999998 444455566666678888888899999999999999999887 4899999854 2111
Q ss_pred --e-----cCCCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCcee-EEEEEEEECCCCCCCCeEEeCCCc
Q psy574 231 --I-----YPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDL-ARASLTVSGPDPNPPPVILFGPAN 302 (977)
Q Consensus 231 --~-----~~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~-~~~~l~V~~~~~~~pp~i~~~p~~ 302 (977)
. .......++.+... .+...|.|.+++.+|+|.|+ |.|.|..+... ..+.|.|... ..+|.+...+..
T Consensus 88 ~~~~~~~~~~~~~~~r~~~~~~-~~~~~L~I~~v~~~D~G~Y~-C~a~n~~~~~~~~~~~l~V~~~--~~~P~v~~~~~~ 163 (254)
T 2c1o_A 88 RLIYLVSKLDSGDPDRFTGSGS-GTDFTLKISRVEAEDLGIYY-CVQGSHFPPTFGAGTKLELKRA--DAAPTVSIFPPS 163 (254)
T ss_dssp EEEETTTEECTTCCTTEEEEEE-TTEEEEEESSCCGGGCSEEE-EEECSSSSCEEBCCEEEEECCC--CBCCEEEEECCC
T ss_pred EEEEeccccCCCccceEEEecC-CCEEEEEECcCCcccCEEEE-EEEEcCcceEecCCEEEEECCC--CCCCeeEeecCC
Confidence 0 11122467776652 35569999999999999999 99999866432 2345666542 224665543333
Q ss_pred eeecCCCcEEEEEEEcc--C--ceEEEEECCEEcCCC--CcEEE--------ecCceEEEeccCCCCCeEEEEEEEcCCC
Q psy574 303 QTLPLRSEARLRCQVRG--E--GSVQWWRGEREVGSG--PRVNV--------TGDGSLVLTDVTKEDSGEYTCVVKSPHG 368 (977)
Q Consensus 303 ~~v~~g~~~~L~C~~~~--~--p~i~W~~~g~~l~~~--~~~~~--------~~~~sl~I~~v~~~d~G~Y~C~a~n~~G 368 (977)
.....|+.++|.|.+.+ + +.+.|+++|..+... .+... ...+.|.|.++...|.|.|+|.|.|...
T Consensus 164 ~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~ 243 (254)
T 2c1o_A 164 SEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTS 243 (254)
T ss_dssp HHHHHTTEEEEEEEEEEEBSSCCEEEEEESSSEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTC
T ss_pred hhhccCCcEEEEEEEecccCCCcEEEEEECCCcccCcceeccccccCCCCcEEEEEEEEeccccccCCCeEEEEEEcCCC
Confidence 33446789999999988 3 359999999887554 11111 1124699999999999999999999876
Q ss_pred ce
Q psy574 369 SA 370 (977)
Q Consensus 369 ~~ 370 (977)
..
T Consensus 244 ~~ 245 (254)
T 2c1o_A 244 TS 245 (254)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 249
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*
Probab=99.77 E-value=1.2e-18 Score=173.29 Aligned_cols=167 Identities=17% Similarity=0.210 Sum_probs=131.6
Q ss_pred EcCCeEEeCCCceEEeCCCeEEEEEEecccCce-EEEEEECCeeCCCCceEEeccceEEEccCccCCCeEEEEEEEeCCe
Q psy574 97 LVKPYIIRGPKDTTVSASSIIVFECSVGGDAVL-TVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVG 175 (977)
Q Consensus 97 ~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~-~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g 175 (977)
..+|.+...|....+.+|++++|.|.+.+.+.+ .+.|+|++..+.. .+..|.|.+++.+|+|.|+|.+.|..+
T Consensus 2 ~~~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~------~~~~L~i~~v~~~d~G~Y~C~~~~~~~ 75 (176)
T 1f2q_A 2 PQKPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEE------TNSSLNIVNAKFEDSGEYKCQHQQVNE 75 (176)
T ss_dssp --CCCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEECSC------CSSEEEECSCCGGGCEEEEEECTTSSC
T ss_pred CCCCEEEcCCCCcceecCCcEEEEEeCCCCCCcceEEEEECCeECCC------CceEEEEeccceecCEEEEEEcCCccc
Confidence 457888888888899999999999999888775 6999999998874 467899999999999999999988654
Q ss_pred eEEEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEEe-cCCCCeEEEEEcCeeeeecCCCccccEEEEEccCCceEEEE
Q psy574 176 KISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIE-GSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKI 254 (977)
Q Consensus 176 ~~~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~-g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~s~L~I 254 (977)
+..+.|.|..++.+.. +....+.+|+.++|.|.+. +.|.+.+.|+++|..+.... ....|.|
T Consensus 76 --s~~~~l~V~~~~~~~~-~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~--------------~~~~L~i 138 (176)
T 1f2q_A 76 --SEPVYLEVFSDWLLLQ-ASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWY--------------ENHNISI 138 (176)
T ss_dssp --CCCEEEEEECSSEEEE-ESCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCC--------------CSSEEEE
T ss_pred --cccEEEEEeCcceeec-CCcceeeCCCCEEEEEEecCCCCceEEEEEECCEEEeeec--------------CCCeEEE
Confidence 4556777775555443 3446888999999999994 66777999999998763211 1239999
Q ss_pred eecccCCCCeEEEEEEEcCCCc-eeEEEEEEEEC
Q psy574 255 QNVSRTAAPLIILCLGVNAAGS-DLARASLTVSG 287 (977)
Q Consensus 255 ~~v~~~d~G~Y~~C~a~n~~g~-~~~~~~l~V~~ 287 (977)
.+++.+|+|.|+ |.|.|..+. .+..+.|.|..
T Consensus 139 ~~v~~~d~G~Y~-C~a~n~~~~~~s~~~~l~V~~ 171 (176)
T 1f2q_A 139 TNATVEDSGTYY-CTGKVWQLDYESEPLNITVIK 171 (176)
T ss_dssp SSCCGGGCEEEE-EEEEETTEEEECCCEEEEEEC
T ss_pred CCCCcccCEEEE-EEEEeCCcceEecCEEEEEec
Confidence 999999999999 999997443 44557888887
No 250
>2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY docking, cell adhesion, structural protein; NMR {Homo sapiens}
Probab=99.77 E-value=2.5e-18 Score=175.03 Aligned_cols=193 Identities=12% Similarity=0.150 Sum_probs=135.9
Q ss_pred CCCCCCeEEeeC--CCceEEEEEcCCCCCCcccceEEEEEeecCCCCCCCCCCCCcccEEEeceecCcCeEEEEccCCCC
Q psy574 399 GPPTKPTLVNQT--ANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVGL 476 (977)
Q Consensus 399 ~~P~~~~v~~~~--~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~i~~L~p~t 476 (977)
++|.++.+..++ .+++.|+|.+|. ++.+.+|.|+|+...... .|..........+++|.+|.|++
T Consensus 1 s~P~~l~v~~v~~~~~si~l~W~~p~---~~~i~~Y~v~~~~~~~~~----------~~~~~~~~~~~~~~~i~~L~p~t 67 (201)
T 2ha1_A 1 SGPVEVFITETPSQPNSHPIQWNAPQ---PSHISKYILRWRPKNSVG----------RWKEATIPGHLNSYTIKGLKPGV 67 (201)
T ss_dssp CCCCEEECCSCSCCSSCEEEEEECCS---STTCCEEEEEEEETTCSS----------CCEEEEECTTCCEEEECSCCTTE
T ss_pred CCceeEEEEecCCCCCEEEEEEeCCC---CCCceEEEEEEEECCCCC----------ceEEEecCCCccEEEecCCCCCC
Confidence 367788888877 899999999983 568999999998755432 67776666678899999999999
Q ss_pred eEEEEEEEEcCCCCCCCCCCCceEEeeccccccccccCCcceeecCCCCCCCcchHHHHhhcccccCCceEEEEEeeEeC
Q psy574 477 TYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPMT 556 (977)
Q Consensus 477 ~Y~~~V~a~n~~G~s~~S~~s~~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~g~~~~~~~~~l~~~~~~~~~~l~~~~~~ 556 (977)
.|.|+|+|.|..|.+.++ ...+++....+...... ... ...+| ++..+.++++...+
T Consensus 68 ~Y~~~V~a~n~~G~~~~~--~~~~~t~~~~~~~~~~~-~~~-~~~~~-------------------p~~~~~~l~~~~~~ 124 (201)
T 2ha1_A 68 VYEGQLISIQQYGHQEVT--RFDFTTTSTSTPVTSNT-VTG-ETTPF-------------------SPLVATSESVTEIT 124 (201)
T ss_dssp EEEEEEEEECTTSCEEEE--EEEEEECCCCCTTCSCC-CCC-SCCCC-------------------CCSCSCCSSCCCCC
T ss_pred EEEEEEEEEecccccCce--eEEEecCCCCCCccccc-ccC-CCCCC-------------------CCccCCceEEEecC
Confidence 999999999999988653 12222211111000000 000 00011 01112467888899
Q ss_pred CCeEEEEEEecCCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeecceeCCCCC
Q psy574 557 STSVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSN 630 (977)
Q Consensus 557 ~tsv~lsW~~p~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~g~~s~ 630 (977)
.++|.|+|++| .+.+.+|.|+|+............+ ....+++.|.+|+|++.|.|+|+|+|..|.|.+..
T Consensus 125 ~~sv~l~W~~p-~~~i~~Y~v~~~~~~~~~~~~~~~v--~~~~~~~~i~~L~p~t~Y~~~V~A~~~~G~~~~~s 195 (201)
T 2ha1_A 125 ASSFVVSWVSA-SDTVSGFRVEYELSEEGDEPQYLDL--PSTATSVNIPDLLPGRKYIVNVYQISEDGEQSLIL 195 (201)
T ss_dssp SCCEEEECCCS-CTTEEEEEEEEEETTTCCCCEEEEE--ETTCCEEEECSCCTTCEEEEEEEEEETTSCEEEEE
T ss_pred CCeEEEEEeCC-CCCccEEEEEEEECCCCCceeEEEc--CCceeEEEeCCCCCCCEEEEEEEEEcCCCCcccEe
Confidence 99999999998 4479999999997643332222333 36788999999999999999999999999886544
No 251
>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L
Probab=99.77 E-value=3.1e-18 Score=183.86 Aligned_cols=181 Identities=15% Similarity=0.263 Sum_probs=131.6
Q ss_pred cccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCC-----EEeec-------CCCceEEEecCc---EEEEcCCC
Q psy574 5 REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNG-----HPIDF-------ENSKRLRLVDGT---NLAIQDSR 69 (977)
Q Consensus 5 ~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g-----~~l~~-------~~~~r~~~~~~g---~L~I~~v~ 69 (977)
...|...|.++.+.+|++|+|.|.+ .+.|.+.|.|+|++ +.+.. ....|+.+..++ +|.|.+++
T Consensus 12 ~~~v~~~p~~~~v~~G~~v~L~C~~-~~~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~ 90 (276)
T 3auv_A 12 DIQMTQSPSSLSASVGDRVTITCRA-SQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQ 90 (276)
T ss_dssp CCCEEEECSEEECCTTCCEEEEEEE-SSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCC
T ss_pred ceeEEeCCCeEEEcCCCCEEEEeEc-CCCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEeccCCeEEEEEccCC
Confidence 3457778989999999999999999 77888999999954 22211 124577665433 79999999
Q ss_pred CCCCeEEEEEEEecCceeeeEeEEEEEEcCC--------------eEEeCCCceEEeCCCeEEEEEEecccC--ceEEEE
Q psy574 70 KTDDGRYQCVVKNVAGTRESTDAVLRVLVKP--------------YIIRGPKDTTVSASSIIVFECSVGGDA--VLTVHW 133 (977)
Q Consensus 70 ~~D~G~Y~C~a~n~~g~~~s~~~~l~V~~~P--------------~~~~~p~~~~v~~G~~v~l~C~v~g~p--~~~i~W 133 (977)
.+|+|.|+|.+.|..+...+..+.|.|..+| .++..|....+.+|++++|.|.+.|.+ .+.+.|
T Consensus 91 ~~DsG~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~p~~~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W 170 (276)
T 3auv_A 91 PEDFATYYCQQHYTTPPTFGCGTKVEIKGGGGGSIEGRSGGGGSEVQLVESGGGLVQPGGSLRLSCAASGFTISDYWIHW 170 (276)
T ss_dssp GGGCEEEEEEECSSSSCCCCCCEEEEC-----------------CCEEEEECCEEECTTCCEEEEEEEESSCGGGSEEEE
T ss_pred hhhCEEEEEEEecCCcccccCCEEEEEecCCCccccccccccCcceEEECCCceEecCCCeEEEEEEecCccCCCCEEEE
Confidence 9999999999998765433444677777543 234456678899999999999998766 589999
Q ss_pred EECC--eeC------------------CCCceEEecc-----ceEEEccCccCCCeEEEEEEEeCC---ee--EEEEEEE
Q psy574 134 KRLG--SAM------------------PEDRMSVLPS-----RSLQLSDVRLEDAGEYVCEAENAV---GK--ISASATL 183 (977)
Q Consensus 134 ~k~~--~~l------------------~~~~~~~~~~-----~~L~I~~v~~~D~G~Y~C~a~n~~---g~--~~~~~~L 183 (977)
+|++ ..+ ..+++.+..+ .+|.|.+++.+|+|.|+|.|.|.. +. .....+|
T Consensus 171 ~k~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~~~~~~~~fg~gt~l 250 (276)
T 3auv_A 171 VRQAPGKCLEWVAGITPAGGYTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARFVFFLPYAMDYWGQGTLV 250 (276)
T ss_dssp EEECTTCCEEEEEEECGGGCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECSSTTCSCCCBCCCEEE
T ss_pred EEcCCCCCcEEEEEEeccCCccccccccCCcEEEEecCCCcEEEEEECCCChhHCEEEEEEEEcCcCCcCceEECCCEEE
Confidence 9963 111 1345555432 379999999999999999999973 21 2234566
Q ss_pred EEe
Q psy574 184 TVQ 186 (977)
Q Consensus 184 ~V~ 186 (977)
.|.
T Consensus 251 ~V~ 253 (276)
T 3auv_A 251 TVS 253 (276)
T ss_dssp EEC
T ss_pred EEc
Confidence 665
No 252
>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}
Probab=99.77 E-value=1.1e-18 Score=180.67 Aligned_cols=179 Identities=23% Similarity=0.360 Sum_probs=127.3
Q ss_pred cceEEeCCCcEEEEEECCCCCCC-----CeEEEEeCCEEe-----------ecCCCceEEEec------CcEEEEcCCCC
Q psy574 13 KSQRVAAGDTALLECGPPRGHPE-----PTLVWKKNGHPI-----------DFENSKRLRLVD------GTNLAIQDSRK 70 (977)
Q Consensus 13 ~~~~v~~G~~v~L~C~~~~g~P~-----~~v~W~k~g~~l-----------~~~~~~r~~~~~------~g~L~I~~v~~ 70 (977)
..+.+.+|++++|.|.+ .+.|. +.|.|+|++... .....+|+.+.. +++|.|.+++.
T Consensus 3 ~~v~~~~G~~v~L~C~~-~~~~~~~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~ 81 (222)
T 4i0k_A 3 DPVVALVDTDATLRCSF-SPEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTALFPDLLVQGNASLRLQRVRV 81 (222)
T ss_dssp CCCCCCTTSCEEECCBC-CCCTTCCTTTEEEEEEETTTCCEEEEEETTEEEEESSCSCEECCTTTGGGTBCCEEECSCCG
T ss_pred CCEEEECCCCeEEEEEe-cCCCCCCCCceEEEEEECCCccEEEEEcCCcccccceeCcEEEecccccCCeEEEEECCccc
Confidence 45789999999999998 55543 789999987433 123345676654 56799999999
Q ss_pred CCCeEEEEEEEecCceeeeEeEEEEEEcC---CeEEeCCCceEEeCCCeEEEEEEe-cccCceEEEEEEC-CeeCCCCc-
Q psy574 71 TDDGRYQCVVKNVAGTRESTDAVLRVLVK---PYIIRGPKDTTVSASSIIVFECSV-GGDAVLTVHWKRL-GSAMPEDR- 144 (977)
Q Consensus 71 ~D~G~Y~C~a~n~~g~~~s~~~~l~V~~~---P~~~~~p~~~~v~~G~~v~l~C~v-~g~p~~~i~W~k~-~~~l~~~~- 144 (977)
+|+|.|+|.+.+... .+..+.|.|..+ |.+...+ ...+.+|+.+.|.|.+ .|.|.+.+.|+++ +..+....
T Consensus 82 ~D~G~Y~C~~~~~~~--~~~~~~l~V~~~~~~p~i~~~~-~~~v~~G~~~~l~C~~~~g~P~~~v~W~~~~~~~~~~~~~ 158 (222)
T 4i0k_A 82 TDEGSYTCFVSIQDF--DSAAVSLQVAAPYSKPSMTLEP-NKDLRPGNMVTITCSSYQGYPEAEVFWKDGQGVPLTGNVT 158 (222)
T ss_dssp GGCSCEEEEEEECCC--CCCCCCCCCCBCCCCCEEECCC------CCSEEEEEEEEEEEBSCCEEEEECTTSCBCCSEEE
T ss_pred ccCEEEEEEEEeCCC--ceEEEEEEEEcCCCCCcEEeCC-CceecCCceEEEEEecccccCCCeEEEEcCCCccCCCCcc
Confidence 999999999998632 344556777654 5555544 4477899999999999 8899999999995 44443321
Q ss_pred eEEe--ccc---eEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEEeeCCeEEecC
Q psy574 145 MSVL--PSR---SLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERP 195 (977)
Q Consensus 145 ~~~~--~~~---~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~~~p~~~~~p 195 (977)
.... .++ .|.|.++..+|.|.|+|.|.|..|.....+.|.|..+|.....+
T Consensus 159 ~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~ 214 (222)
T 4i0k_A 159 TSQMANERGLFDVHSVLRVVLGANGTYSCLVRNPVLQQDAHGSVTITGQPLTFPPE 214 (222)
T ss_dssp EEEEECTTSCEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECCC--------
T ss_pred eeEEcCCCCeEEEEEEEEEEeCCCCEEEEEEECCCCCCceEEEEEEeCCccccCCc
Confidence 1111 222 38899999999999999999999999999999999877654443
No 253
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}
Probab=99.77 E-value=1.2e-18 Score=176.64 Aligned_cols=168 Identities=18% Similarity=0.222 Sum_probs=116.9
Q ss_pred cCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceE---EeccceEEEccCccCCCeEEEEEEEeCC
Q psy574 98 VKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMS---VLPSRSLQLSDVRLEDAGEYVCEAENAV 174 (977)
Q Consensus 98 ~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~---~~~~~~L~I~~v~~~D~G~Y~C~a~n~~ 174 (977)
.+|.+...|.. .+.+|++++|.|.+.+.|. .+.|+|++..+...... ...++.|.|.+++.+|+|.|+|.|.|..
T Consensus 4 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~ 81 (196)
T 2d3v_A 4 SKATLWAEPGS-VISRGNSVTIRCQGTLEAQ-EYRLVKEGSPEPWDTQNPLEPKNKARFSIPSMTEHHAGRYRCYYYSPA 81 (196)
T ss_dssp CBCEEEEESCS-EEETTCCEEEEEECCTTCC-EEEEEETTCSSCSEEECCCSSTTEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred CCCEEEeCCCC-cccCCCeEEEEEeCCCCCc-EEEEEECCCCCCcccccccCCccccEEEeccCChhHCeEEEEEEeCCC
Confidence 56778777764 8899999999999988776 99999999877532111 1245789999999999999999999987
Q ss_pred eeE--EEEEEEEEee---CCeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCccccE-EEEEccCC
Q psy574 175 GKI--SASATLTVQM---APIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNI-QAEITSDG 248 (977)
Q Consensus 175 g~~--~~~~~L~V~~---~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~-~~~~~~~g 248 (977)
|.. +..+.|.|.. +|.+...+ ...+.+|+.++|.|.+.+.| +.+.|+|+|..+... ... ........
T Consensus 82 g~~~~s~~~~l~V~~~~~~p~i~~~~-~~~v~~G~~v~L~C~~~~~p-~~~~W~k~g~~~~~~-----~~~~~~~~~~~~ 154 (196)
T 2d3v_A 82 GWSEPSDPLELVVTGFYNKPTLSALP-SPVVTSGENVTLQCGSRLRF-DRFILTEEGDHKLSW-----TLDSQLTPSGQF 154 (196)
T ss_dssp EECBCCCCEEEEEECSSCCCEEEC------------CEEEEEESSCC-SEEEEEEC---CCEE-----EEECEECTTSCE
T ss_pred CcCCcCccEEEEecCCCCCCeEEccC-CccccCCCcEEEEEEcCCCC-CEEEEEccCCccccc-----ccccccccCCCc
Confidence 743 4567888876 45665544 35788999999999999988 899999999765310 000 01000011
Q ss_pred ceEEEEeecccCCCCeEEEEEEEcCCC
Q psy574 249 MNLLKIQNVSRTAAPLIILCLGVNAAG 275 (977)
Q Consensus 249 ~s~L~I~~v~~~d~G~Y~~C~a~n~~g 275 (977)
...|.|.+++.+|+|.|+ |.|.|..+
T Consensus 155 ~~~L~I~~v~~~D~G~Y~-C~a~n~~~ 180 (196)
T 2d3v_A 155 QALFPVGPVTPSHRWMLR-CYGSRRHI 180 (196)
T ss_dssp EEEEECCCCBTTBCEEEE-EEEEETTE
T ss_pred eeEEEeeecCcccCeeEE-EEEEccCC
Confidence 248999999999999999 99999765
No 254
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A
Probab=99.77 E-value=6.9e-18 Score=167.94 Aligned_cols=157 Identities=16% Similarity=0.213 Sum_probs=121.3
Q ss_pred ccceEEeCCCcEEEEEEC-CCCCCCCeEEEEe--CCEEeec--------CCCceEEEecCcEEEEcCCCCCCCeEEEEEE
Q psy574 12 PKSQRVAAGDTALLECGP-PRGHPEPTLVWKK--NGHPIDF--------ENSKRLRLVDGTNLAIQDSRKTDDGRYQCVV 80 (977)
Q Consensus 12 p~~~~v~~G~~v~L~C~~-~~g~P~~~v~W~k--~g~~l~~--------~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a 80 (977)
+..+.+.+|++|+|.|.. +.+.|.+.|.|+| ++..|.. ..+.|+.+..+|+|.|.+++.+|+|.|+|.+
T Consensus 6 ~~~v~g~~G~sv~L~~~~~~~~~~~~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~~~~ngsL~I~~v~~~DsG~Y~c~~ 85 (182)
T 1hnf_A 6 ALETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQDIYKVSI 85 (182)
T ss_dssp CEEEEEETTSCEEECCTTCCCCSSEEEEEEEEGGGCCEEEEECGGGCEEESCTTEEECTTSCEEECSCCGGGCEEEEEEE
T ss_pred ccEEEEecCCCEEEeCCcccccCcCCEEEEEECCCCcEEEEEeCccCCCCCCCeEEECCCCCEEECCCChhhCEEEEEEE
Confidence 456889999999999944 3345678999999 9887721 2356888888999999999999999999999
Q ss_pred EecCceee-eEeEEEEEEcC---CeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceEEeccceEEEc
Q psy574 81 KNVAGTRE-STDAVLRVLVK---PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLS 156 (977)
Q Consensus 81 ~n~~g~~~-s~~~~l~V~~~---P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~~~~~L~I~ 156 (977)
.|..|... ...+.|.|..+ |.+.. .+..++|.|.+.+.|.+.|.|++++..+ .. ....|.+.
T Consensus 86 ~n~~g~~~~~~~~~L~V~~~~~~P~i~~--------~~~~v~L~C~~~~~p~~~~~W~~~g~~l-~~-----~~~~i~~~ 151 (182)
T 1hnf_A 86 YDTKGKNVLEKIFDLKIQERVSKPKISW--------TCINTTLTCEVMNGTDPELNLYQDGKHL-KL-----SQRVITHK 151 (182)
T ss_dssp EETTSCEEEEEEEEEEEECCCCCCEEEE--------ETTTTEEEEECSSCSSCEEEEEESSCEE-EE-----ESSCEEEE
T ss_pred EeCCCceeEEEEEEEEEcCcCCCCEEEE--------ccCcEEEEeEccCCCCCEEEEEECCEEC-CC-----CCcEEEEe
Confidence 99887654 35677888753 33222 3447999999998889999999999887 11 23345443
Q ss_pred cCccCCCeEEEEEEEeCCeeEEEEEEE
Q psy574 157 DVRLEDAGEYVCEAENAVGKISASATL 183 (977)
Q Consensus 157 ~v~~~D~G~Y~C~a~n~~g~~~~~~~L 183 (977)
. ..+|+|.|+|.|.|..+..+....+
T Consensus 152 ~-~~~d~G~Y~C~a~N~~~~~~s~~~~ 177 (182)
T 1hnf_A 152 W-TTSLSAKFKCTAGNKVSKESSVEPV 177 (182)
T ss_dssp C-CSCEEEEEEEEEECSSCEEEEEEEE
T ss_pred c-ccCCCcEEEEEEEeCCCCcEEccee
Confidence 3 5789999999999999987666554
No 255
>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A
Probab=99.77 E-value=2.3e-18 Score=177.68 Aligned_cols=174 Identities=17% Similarity=0.250 Sum_probs=126.7
Q ss_pred ccceecccceEEeCCCcEEEEEECCCCC-CCCeEEEEeCC---E-------------EeecCCCceEEEec---CcEEEE
Q psy574 6 EEFRVQPKSQRVAAGDTALLECGPPRGH-PEPTLVWKKNG---H-------------PIDFENSKRLRLVD---GTNLAI 65 (977)
Q Consensus 6 ~~~~~~p~~~~v~~G~~v~L~C~~~~g~-P~~~v~W~k~g---~-------------~l~~~~~~r~~~~~---~g~L~I 65 (977)
+.+...| .+.+.+|++++|.|.+ .+. |.+.|.|+|+. . ........|+.+.. +++|.|
T Consensus 2 ~~v~~~p-~~~v~~G~~v~L~C~~-~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I 79 (218)
T 3s96_B 2 LVLTQSS-SASFSLGASAKLTCTL-NSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSSGADRYLSI 79 (218)
T ss_dssp CSEECCS-EEEEETTSCEEEEEEE-CGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEEETTEEEEEE
T ss_pred CeEEeCC-cEEECCCCcEEEEEEC-CCCCCCcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEecCCceEEEEE
Confidence 4556667 8999999999999999 677 88999999931 1 11111234666543 346999
Q ss_pred cCCCCCCCeEEEEEEEecCc----eeeeEeEEEEEE----cCCeEEeCCCceEEeCCCeEEEEEEecc-cCce-EEEEEE
Q psy574 66 QDSRKTDDGRYQCVVKNVAG----TRESTDAVLRVL----VKPYIIRGPKDTTVSASSIIVFECSVGG-DAVL-TVHWKR 135 (977)
Q Consensus 66 ~~v~~~D~G~Y~C~a~n~~g----~~~s~~~~l~V~----~~P~~~~~p~~~~v~~G~~v~l~C~v~g-~p~~-~i~W~k 135 (977)
.+++.+|+|.|+|.+.+..| ......+.|.|. .+|.+...+....+..|+.++|.|.+.| .|.+ .|.|+|
T Consensus 80 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~~~~v~L~C~~~g~~p~~~~v~W~k 159 (218)
T 3s96_B 80 SNIQPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLGQPKSTPTLTVFPPSSEELKENKATLVCLISNFSPSGVTVAWKA 159 (218)
T ss_dssp SSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEE
T ss_pred ccCCcccCEEEEEEEecCCCCceeEEEcCcEEEEEecCCCCCceEEeeCCCcccccCCcEEEEEEECcccCCCeEEEEEE
Confidence 99999999999999998765 223445688888 5677766555555667899999999987 5666 899999
Q ss_pred CCeeCCCCceE---------EeccceEEEccCccCCCeEEEEEEEeCCeeEEEEE
Q psy574 136 LGSAMPEDRMS---------VLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASA 181 (977)
Q Consensus 136 ~~~~l~~~~~~---------~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~ 181 (977)
++..+..+... ......|.|.....+|+|.|+|.|.|..+.....+
T Consensus 160 ~g~~l~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~ 214 (218)
T 3s96_B 160 NGTPITQGVDTSNPTKEGNKFMASSFLHLTSDQWRSHNSFTCQVTHEGDTVEKSL 214 (218)
T ss_dssp TTEEC--------------CEEEEEEEEEEHHHHHTCSCEEEEEEETTEEEEEEE
T ss_pred CCEECcCceecCcccccCCcEEEEEEEEEeHHHccCCCeEEEEEEeCCCcccccc
Confidence 99988642100 11123488888888899999999999987665543
No 256
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B
Probab=99.77 E-value=1.9e-17 Score=168.65 Aligned_cols=174 Identities=15% Similarity=0.224 Sum_probs=130.7
Q ss_pred EeCCCceEEeCCCeEEEEEEecccCc-----eEEEEEECCeeCC--CCceEEecc------ceEEEccCccCCCeEEEEE
Q psy574 103 IRGPKDTTVSASSIIVFECSVGGDAV-----LTVHWKRLGSAMP--EDRMSVLPS------RSLQLSDVRLEDAGEYVCE 169 (977)
Q Consensus 103 ~~~p~~~~v~~G~~v~l~C~v~g~p~-----~~i~W~k~~~~l~--~~~~~~~~~------~~L~I~~v~~~D~G~Y~C~ 169 (977)
...+..+.+.+|+++.|.|.+.+.|. +.+.|+|++..+. .++..+..+ .+|.|.+++.+|+|.|+|.
T Consensus 6 ~~p~~~v~v~~G~~v~L~C~~~~~p~~~~~~~~v~W~k~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 85 (202)
T 3bp6_B 6 TAPKEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQVRDSGQYRCL 85 (202)
T ss_dssp ECSCSEEEEETTSCEEEEEEECTTC---CTTEEEEEEECC--CCCBCSSCEECGGGGGGTEEEEEECSCCGGGCEEEEEE
T ss_pred ecCCcCEEEeCCCcEEEEEEecCCCCCCccceEEEEEcCCCcccccCCceEEeeccccCCeeEEEECCCCHHHCcEEEEE
Confidence 33455678999999999999988876 8999999544432 345555433 6899999999999999999
Q ss_pred EEeCCeeEEEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCccccEEEEEccCCc
Q psy574 170 AENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGM 249 (977)
Q Consensus 170 a~n~~g~~~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~ 249 (977)
+.|..+.....+.|.|..++..... ....+.+|+.++|.|.+.|.|.+.+.|++++..+.. ......+|.
T Consensus 86 ~~~~~~~~~~~~~l~V~~~~~~p~~-~~~~~~~g~~v~l~C~~~g~P~p~v~W~~~~~~~~~---------~~~~~~~~~ 155 (202)
T 3bp6_B 86 VICGAAWDYKYLTVKVKASYMRIDT-RILEVPGTGEVQLTCQARGYPLAEVSWQNVSVPANT---------SHIRTPEGL 155 (202)
T ss_dssp EEETTEEEEEEEEEEEEBCCCCEEE-EEEECTTTCCEEEEEEEEEBSCCEEEETTCCSCCEE---------EEEECTTSC
T ss_pred EEeCCCcceEEEEEEecCCCCcccE-EEEecCCCCeEEEEEEccccCCceEEEEeCCCCccC---------ceeeCCCCC
Confidence 9999998888999999865421110 011345799999999999999999999998765421 111111232
Q ss_pred -eEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEEC
Q psy574 250 -NLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSG 287 (977)
Q Consensus 250 -s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~ 287 (977)
..+.|..+..+|.|.|+ |.|.|..|.....+.|.|..
T Consensus 156 ~~~~~i~~v~~~d~G~Y~-C~a~N~~g~~~~~~~l~v~~ 193 (202)
T 3bp6_B 156 YQVTSVLRLKPQPSRNFS-CMFWNAHMKELTSAIIDPLS 193 (202)
T ss_dssp EEEEEEEEECCCTTCCEE-EEEEETTTTEEEEEEECC--
T ss_pred EEEEEEEEEEcCCCCEEE-EEEEcCCcccccEEEEEecC
Confidence 46778899999999999 99999999998888887765
No 257
>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...
Probab=99.77 E-value=1.1e-18 Score=179.28 Aligned_cols=172 Identities=16% Similarity=0.242 Sum_probs=130.2
Q ss_pred cceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeC--CEEee----------cCCCceEEEec---CcEEEEcCCCCC
Q psy574 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKN--GHPID----------FENSKRLRLVD---GTNLAIQDSRKT 71 (977)
Q Consensus 7 ~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~--g~~l~----------~~~~~r~~~~~---~g~L~I~~v~~~ 71 (977)
.+...| .+.+.+|++++|.|.+ . |.+.|.|+|+ +..+. .....|+.+.. +++|.|.+++.+
T Consensus 3 ~v~~~~-~~~v~~G~~v~L~C~~-~--~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~ 78 (211)
T 3tv3_L 3 ALTQPP-SASGSPGQSITISCTG-T--SNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSKSGNTASLTVSGLQTD 78 (211)
T ss_dssp CCBCCS-EEEECTTCEEEEEEEC-C--CSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEEESCCGG
T ss_pred eEEeCc-eEEEcCCCCEEEEEEE-C--CCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEccCCEEEEEECCCChh
Confidence 455566 8999999999999999 4 8889999994 22211 01234665432 347999999999
Q ss_pred CCeEEEEEEEecCc-eeeeEeEEEEEE----cCCeEEeCCCceEEeCCCeEEEEEEeccc--CceEEEEEECCeeCCCCc
Q psy574 72 DDGRYQCVVKNVAG-TRESTDAVLRVL----VKPYIIRGPKDTTVSASSIIVFECSVGGD--AVLTVHWKRLGSAMPEDR 144 (977)
Q Consensus 72 D~G~Y~C~a~n~~g-~~~s~~~~l~V~----~~P~~~~~p~~~~v~~G~~v~l~C~v~g~--p~~~i~W~k~~~~l~~~~ 144 (977)
|+|.|+|.+.|..+ ......+.|.|. .+|.+...+....+.+|+.++|.|.+.|. |.+.+.|+|++..+..+.
T Consensus 79 D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~ 158 (211)
T 3tv3_L 79 DEAVYYCGSLVGNWDVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGV 158 (211)
T ss_dssp GCEEEEEEEEETTTEEEECCCEEEEECCSCCBCCEEEEECCCHHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEEECTTE
T ss_pred HCEEEEEEEecCCCceeECCCceEEEeCCCCcCCeeEecCCchhhhcCCCeEEEEEeeeecCCCeEEEEEECCeecCCCc
Confidence 99999999999887 345566788888 67888777766666689999999999875 358999999999876421
Q ss_pred e----EEe------ccceEEEccCccCCCeEEEEEEEeCCeeEEEEEE
Q psy574 145 M----SVL------PSRSLQLSDVRLEDAGEYVCEAENAVGKISASAT 182 (977)
Q Consensus 145 ~----~~~------~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~ 182 (977)
. ... ....|.|.++..+|.|.|+|.|.|..+...+.+.
T Consensus 159 ~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~v~~~~~~~~~~~~ 206 (211)
T 3tv3_L 159 ETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVA 206 (211)
T ss_dssp EECCCEECTTSSEEEEEEEEECHHHHHHSSCEEEEEEETTEEEEEEEC
T ss_pred ccCCceECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECCCCEEeecc
Confidence 1 111 1246999999999999999999999877665543
No 258
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G
Probab=99.76 E-value=6.7e-19 Score=180.16 Aligned_cols=182 Identities=19% Similarity=0.313 Sum_probs=142.7
Q ss_pred CCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeC-------------CCCceEEeccceEEEccCccCCCeE
Q psy574 99 KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAM-------------PEDRMSVLPSRSLQLSDVRLEDAGE 165 (977)
Q Consensus 99 ~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l-------------~~~~~~~~~~~~L~I~~v~~~D~G~ 165 (977)
++.+...|....+.+|+++.|.|.+.+.|.+.+.|+|++..+ ...++... +..|.|.+++.+|+|.
T Consensus 4 ~~~i~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~-~~~L~i~~~~~~d~G~ 82 (209)
T 1nbq_A 4 SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFL-PTGITFKSVTREDTGT 82 (209)
T ss_dssp CCEEECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEE-TTEEECSCCCTTSCSE
T ss_pred eEEEEcCCCceEEEcCCCEEEEEEEeCCCCcEEEEEEcCCceeEEEEecCccCccccCceEee-ccEEEEeeCCHHHCcE
Confidence 455667788889999999999999999899999999987652 12344443 3889999999999999
Q ss_pred EEEEEEeCCe--eEEEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEE-ecCCCCeEEEEEcCeeeeecCCCc----cc
Q psy574 166 YVCEAENAVG--KISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGI-EGSPPPSTFWMLEGNRSLIYPGDR----VD 238 (977)
Q Consensus 166 Y~C~a~n~~g--~~~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~-~g~p~~~i~W~~~g~~~~~~~~~~----~~ 238 (977)
|+|.+.|..| ..+..+.|.|..+|.+...+....+.+|+.++|.|.+ .+.|.+.+.|++++..+....... ..
T Consensus 83 Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~ 162 (209)
T 1nbq_A 83 YTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNS 162 (209)
T ss_dssp EEEEEEETTSSCEECCEEECCEEBCCCCCCCCCBSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTC
T ss_pred EEEEEecCCCCccceEEEEEEEecCCcCCCcccccceecCCEEEEEEeCCCCCCCceeEEEECCeeCCCccccceeeecc
Confidence 9999999865 4566788899988888777777789999999999997 899999999999998764322110 01
Q ss_pred cEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEE--EEEEE
Q psy574 239 NIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLAR--ASLTV 285 (977)
Q Consensus 239 ~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~--~~l~V 285 (977)
++... ...+.|.|.+++.+|+|.|+ |.|.|..|....+ +.|.|
T Consensus 163 ~~~~~---~~~~~L~i~~~~~~d~G~Y~-C~a~n~~g~~~~s~~v~l~V 207 (209)
T 1nbq_A 163 SYVLN---PTTGELVFDPLSASDTGEYS-CEARNGYGTPMTSNAVRMEA 207 (209)
T ss_dssp CCCCC---TTTCCEEESSCCGGGCCCEE-EEEECSSSCCEECCCBCCEE
T ss_pred ceEEc---CCcceEEEEeccccCCeEEE-EEEeCCcCcccccccEEEEE
Confidence 22211 12348999999999999999 9999999988433 34444
No 259
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*
Probab=99.76 E-value=4.8e-18 Score=174.70 Aligned_cols=180 Identities=16% Similarity=0.153 Sum_probs=129.2
Q ss_pred CCCceEEeCC--CeEEEEEEecccCceEEEEEEC---CeeCCCC-ceEEeccceEEEccCccCCCeEEEEEEEeCCeeEE
Q psy574 105 GPKDTTVSAS--SIIVFECSVGGDAVLTVHWKRL---GSAMPED-RMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKIS 178 (977)
Q Consensus 105 ~p~~~~v~~G--~~v~l~C~v~g~p~~~i~W~k~---~~~l~~~-~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~ 178 (977)
.|..+.+.+| +++.|.|.+.+ |.+.+.|+++ +..+..+ ++....+..|.|.+++.+|+|.|+|.|.|..+...
T Consensus 13 ~p~~v~v~eG~~~~v~L~C~~~~-p~~~v~w~~~~~~g~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~n~~~~~~ 91 (213)
T 2x1w_L 13 QHGVVYITENKNKTVVIPCLGSI-SNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQ 91 (213)
T ss_dssp -CEEEEECCSTTCEEEECCCBSS-TTCCEEEEEETTTEEECCCSSSCEEETTTEEEEEGGGTTTCSEEEEEEC----CEE
T ss_pred CceEEEEecCCCccEEEeeccCC-CCcEEEEEhhcCCCccccCCCcccccCCccEEEccCChhcCceEEEEEEECCeeEE
Confidence 3567789999 99999999976 7789999885 5555543 34444667899999999999999999998544433
Q ss_pred -EEEEEEEee--CCeEEecCCCc-EEeeCCeEEEEEEEecCCC--CeEEEEEcCeeeeecCCCccccEEEEE---ccCCc
Q psy574 179 -ASATLTVQM--APIVRERPSDL-RLEVGRDAVFLCGIEGSPP--PSTFWMLEGNRSLIYPGDRVDNIQAEI---TSDGM 249 (977)
Q Consensus 179 -~~~~L~V~~--~p~~~~~p~~~-~v~~G~~v~L~C~~~g~p~--~~i~W~~~g~~~~~~~~~~~~~~~~~~---~~~g~ 249 (977)
..+.|.|.. +|.+...+... .+.+|+.++|.|.+.+.|. +.+.|++++..+..... ...+..... .....
T Consensus 92 s~~~~l~v~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~i~W~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~ 170 (213)
T 2x1w_L 92 SIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKL-VNRDLKTQSGSEMKKFL 170 (213)
T ss_dssp CCCEEEEECBCCEEEEEEESCSCEEEETTCCEEEEEEEEECTTBCCEEEEECSCSSCCSEEE-EEEEECCCSSCSCEEEE
T ss_pred EEEEEEEEeCCcccceEEcCCCCeEEcCCCCEEEEEEEECCCCCceEEEEEecCCccceEEE-eccccccccCccceeee
Confidence 236777754 44555555554 8999999999999998653 57999999876421000 000000000 00112
Q ss_pred eEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEEC
Q psy574 250 NLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSG 287 (977)
Q Consensus 250 s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~ 287 (977)
+.|.|.+++.+|+|.|+ |.|.|..|.....+.|.|.+
T Consensus 171 ~~L~I~~v~~~D~G~Y~-C~a~N~~g~~~~~~~l~V~~ 207 (213)
T 2x1w_L 171 STLTIDGVTRSDQGLYT-CAASSGLMTKKNSTFVRVHE 207 (213)
T ss_dssp EEEEESSCCGGGCEEEE-EEEECSSCEEEEEEEEEEEC
T ss_pred EEEEECCCCcccCEEEE-EEEecCCCcEEEEEEEEEec
Confidence 48999999999999999 99999999999999999987
No 260
>1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular matrix, adhesion, fusion protein, structural protein; 2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1
Probab=99.76 E-value=2.9e-17 Score=164.86 Aligned_cols=180 Identities=16% Similarity=0.183 Sum_probs=133.5
Q ss_pred CCCCCCCCCeEEeeCCCceEEEEEcCCCCCCcccceEEEEEeecCCCCCCCCCCCCcccEEEeceecCcCeEEEEccCCC
Q psy574 396 TYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVG 475 (977)
Q Consensus 396 ~~p~~P~~~~v~~~~~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~i~~L~p~ 475 (977)
..|++|.++.+..++.+++.|+|.+|.. .+.+|.|+|+..+. .+..........++.+.+|.|+
T Consensus 5 t~p~~P~~l~~~~~~~~sv~l~W~~p~~----~i~~Y~v~~~~~~~------------~~~~~~~~~~~~~~~i~~L~p~ 68 (186)
T 1qr4_A 5 TDLDNPKDLEVSDPTETTLSLRWRRPVA----KFDRYRLTYVSPSG------------KKNEMEIPVDSTSFILRGLDAG 68 (186)
T ss_dssp ---CCCEEEEEESCCSSEEEEEEECCSS----CCSEEEEEEECTTC------------CEEEEEECTTCSEEEEESCCSS
T ss_pred CCCcCCCceEEEecCCCEEEEEEeCCCC----CccEEEEEEEeCCC------------CeeEEECCCCCCEEEECCCCCC
Confidence 4589999999999999999999998843 67899999984321 4444444566789999999999
Q ss_pred CeEEEEEEEEcCCCCCCCCCCCceEEeeccccccccccCCcceeecCCCCCCCcchHHHHhhcccccCCceEEEEEeeEe
Q psy574 476 LTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPM 555 (977)
Q Consensus 476 t~Y~~~V~a~n~~G~s~~S~~s~~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~g~~~~~~~~~l~~~~~~~~~~l~~~~~ 555 (977)
+.|.|+|+|.|..|.+.+. ...+.+ .+ . +| .++++...
T Consensus 69 t~Y~~~V~a~~~~~~s~~~--~~~~~t---~p----~---------~P------------------------~~l~~~~~ 106 (186)
T 1qr4_A 69 TEYTISLVAEKGRHKSKPT--TIKGST---VV----G---------SP------------------------KGISFSDI 106 (186)
T ss_dssp CEEEEEEEEESSSCBCCCE--EEEEEC---CC----C---------CC------------------------SCEEEESC
T ss_pred CEEEEEEEEEcCCccCCCE--EEEEEC---CC----C---------CC------------------------CccEEEEe
Confidence 9999999999976555431 111222 11 1 22 35788889
Q ss_pred CCCeEEEEEEecCCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeecceeCCCCCceEEe
Q psy574 556 TSTSVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVR 635 (977)
Q Consensus 556 ~~tsv~lsW~~p~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~g~~s~~~~~~ 635 (977)
+.++|.|+|++|. +.+.+|.|+|+..+. ..+....+. ....++.|.+|+|++.|.|+|+|.+..|.|.+.. ..++
T Consensus 107 ~~~sv~l~W~~p~-~~i~~Y~v~~~~~~~-~~~~~~~~~--~~~~~~~i~~L~p~t~Y~~~V~A~~~~g~s~p~~-~~~~ 181 (186)
T 1qr4_A 107 TENSATVSWTPPR-SRVDSYRVSYVPITG-GTPNVVTVD--GSKTRTKLVKLVPGVDYNVNIISVKGFEESEPIS-GILK 181 (186)
T ss_dssp CSSCEEEEECCCS-SCCSEEEEEEEETTC-CCCEEEEEE--TTCCEEEECSCCSSCEEEEEEEEEETTEECCCEE-EEEE
T ss_pred CCCEEEEEEECCC-CcccEEEEEEEeCCC-CCceEEEcC--CCcCEEEEcCCCCCCEEEEEEEEEcCCCcCcCEE-EEEE
Confidence 9999999999885 459999999998774 333333333 5778999999999999999999999999886533 5566
Q ss_pred ccC
Q psy574 636 TLE 638 (977)
Q Consensus 636 T~~ 638 (977)
|..
T Consensus 182 T~p 184 (186)
T 1qr4_A 182 TAL 184 (186)
T ss_dssp C--
T ss_pred ecC
Confidence 654
No 261
>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1
Probab=99.76 E-value=4e-18 Score=180.89 Aligned_cols=179 Identities=20% Similarity=0.300 Sum_probs=130.2
Q ss_pred ecccceEEeCCCcEEEEEECCCCCC--CCeEEEEeC--CE---Eee-----------cCCCceEEEecC-----cEEEEc
Q psy574 10 VQPKSQRVAAGDTALLECGPPRGHP--EPTLVWKKN--GH---PID-----------FENSKRLRLVDG-----TNLAIQ 66 (977)
Q Consensus 10 ~~p~~~~v~~G~~v~L~C~~~~g~P--~~~v~W~k~--g~---~l~-----------~~~~~r~~~~~~-----g~L~I~ 66 (977)
.+|..+.+.+|++|+|.|.+ .+.| .+.|.|+|+ +. .+. .....|+.+..+ .+|.|.
T Consensus 5 ~~p~~~~v~~G~~v~L~C~~-~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~ 83 (257)
T 1f3r_B 5 LESGPGLVRPSETLSLTCTV-SGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMN 83 (257)
T ss_dssp EEECCSEECTTSEEEEEEEE-ESSCTTTSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEETTTTEEEEEEE
T ss_pred ECCCCccccCCceEEEEEEE-ecccCCCccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEEEC
Confidence 45667899999999999998 6664 689999995 22 110 112457776532 479999
Q ss_pred CCCCCCCeEEEEEEEecCc-------e-eeeEeEEEEEEcCC---------------eEEeCCCceEEeCCCeEEEEEEe
Q psy574 67 DSRKTDDGRYQCVVKNVAG-------T-RESTDAVLRVLVKP---------------YIIRGPKDTTVSASSIIVFECSV 123 (977)
Q Consensus 67 ~v~~~D~G~Y~C~a~n~~g-------~-~~s~~~~l~V~~~P---------------~~~~~p~~~~v~~G~~v~l~C~v 123 (977)
+++.+|+|.|+|.|.|..| . .....+.|.|..+| .+...|....+.+|++++|.|.+
T Consensus 84 ~v~~~DsG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~ 163 (257)
T 1f3r_B 84 SLQTDDTGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGGGSDIKLTQSPSLLSASVGDRVTLSCKG 163 (257)
T ss_dssp SCCTTCCEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCCSSCCSSSCCCCCEECSCEETSEECCCTTCCEEEEEEC
T ss_pred CCCcccCEEEEEEEcccccCccccccccccCCceEEEEEeCCccccccccCCCccceEEEccCCEEEEcCCCCEEEEEEE
Confidence 9999999999999998754 1 12244578887653 34445667788999999999999
Q ss_pred cccCceEEEEEE--CCeeCC-------------CCceEEe---ccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy574 124 GGDAVLTVHWKR--LGSAMP-------------EDRMSVL---PSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTV 185 (977)
Q Consensus 124 ~g~p~~~i~W~k--~~~~l~-------------~~~~~~~---~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V 185 (977)
.+.|.+.+.|+| ++..+. ..++.+. ...+|.|.+++.+|+|.|+|.|.|........+.|.|
T Consensus 164 ~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~g~gt~l~V 243 (257)
T 1f3r_B 164 SQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVATYFCYQYNNGYTFGAGTKLEL 243 (257)
T ss_dssp SSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSEEEEEEESSSEEECCCCEECC
T ss_pred CCcCCCcEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEecCCCEEEEEECCCChhhCEEEEEEEeCCCCeECCCEEEEE
Confidence 988888999999 554331 2455443 2347999999999999999999997522334456766
Q ss_pred eeCC
Q psy574 186 QMAP 189 (977)
Q Consensus 186 ~~~p 189 (977)
...+
T Consensus 244 ~~~~ 247 (257)
T 1f3r_B 244 KAAE 247 (257)
T ss_dssp SSSC
T ss_pred eCCC
Confidence 6444
No 262
>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*
Probab=99.76 E-value=1.2e-17 Score=176.43 Aligned_cols=166 Identities=16% Similarity=0.224 Sum_probs=123.6
Q ss_pred ccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCC-----EEee-------cCCCceEEEecC---cEEEEcCCCC
Q psy574 6 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNG-----HPID-------FENSKRLRLVDG---TNLAIQDSRK 70 (977)
Q Consensus 6 ~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g-----~~l~-------~~~~~r~~~~~~---g~L~I~~v~~ 70 (977)
..+...|..+.+.+|++++|.|.+ .+.|.+.|.|+|+. +.+. .....|+.+... .+|.|.+++.
T Consensus 5 ~~v~~~p~~~~v~~G~~v~L~C~~-~~~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~ 83 (250)
T 3esu_F 5 IVLIQSTSSLSASLGDRVTISCRA-SQDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSGSGTDYSLTISNLEQ 83 (250)
T ss_dssp CCEECSCSEEEECTTCCEEEEEEE-SSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred eeEEecCCEEEeeCCCcEEEEEEe-cccCCceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeCCCCEEEEEEccCCh
Confidence 345667888999999999999999 78888999999953 1111 122356655433 2799999999
Q ss_pred CCCeEEEEEEEecCceeeeEeEEEEEEcC-------------------CeEEeCCCceEEeCCCeEEEEEEecccC--ce
Q psy574 71 TDDGRYQCVVKNVAGTRESTDAVLRVLVK-------------------PYIIRGPKDTTVSASSIIVFECSVGGDA--VL 129 (977)
Q Consensus 71 ~D~G~Y~C~a~n~~g~~~s~~~~l~V~~~-------------------P~~~~~p~~~~v~~G~~v~l~C~v~g~p--~~ 129 (977)
+|+|.|+|.+.|..+......+.|.|..+ +.+...|....+.+|++++|.|.+.+.+ .+
T Consensus 84 ~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~ 163 (250)
T 3esu_F 84 EDIGTYFCQQGNTLPWTFGGGTKLEIRRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPELVKPGASVKISCKDSGYAFSSS 163 (250)
T ss_dssp GGCEEEEEEECSSSSCEECCCEEEEEC------------------------CEECCCEEECTTCCEEEEEECCSTTGGGS
T ss_pred hhCEEEEEEEeeCCCceECCCEEEEEECCCCcccccccccccccCcccceEEecCCceEEcCCceEEEEEEecCCcccCC
Confidence 99999999999876654445567777653 3445556778899999999999998766 78
Q ss_pred EEEEEEC--CeeC------------------CCCceEEecc-----ceEEEccCccCCCeEEEEEEEe
Q psy574 130 TVHWKRL--GSAM------------------PEDRMSVLPS-----RSLQLSDVRLEDAGEYVCEAEN 172 (977)
Q Consensus 130 ~i~W~k~--~~~l------------------~~~~~~~~~~-----~~L~I~~v~~~D~G~Y~C~a~n 172 (977)
.+.|+|+ +..+ ..+|+.+..+ .+|.|.+++.+|+|.|+|.+.+
T Consensus 164 ~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~ 231 (250)
T 3esu_F 164 WMNWVKQRPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTADKSSSTAYMQLSSLTSVDSAVYFCARSG 231 (250)
T ss_dssp EEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred EEEEEEECCCCCcEEEEEEeccCCccccCccccceEEEEecCCCCeEEEEECCCCcccCEEEEEEEec
Confidence 9999997 3322 1145555432 2699999999999999999997
No 263
>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D
Probab=99.76 E-value=4.5e-18 Score=180.47 Aligned_cols=180 Identities=18% Similarity=0.271 Sum_probs=130.0
Q ss_pred eecccceEEeCCCcEEEEEECCCCCC--CCeEEEEeC--CEE---e------------ecCCCceEEEecC-----cEEE
Q psy574 9 RVQPKSQRVAAGDTALLECGPPRGHP--EPTLVWKKN--GHP---I------------DFENSKRLRLVDG-----TNLA 64 (977)
Q Consensus 9 ~~~p~~~~v~~G~~v~L~C~~~~g~P--~~~v~W~k~--g~~---l------------~~~~~~r~~~~~~-----g~L~ 64 (977)
..+|..+.+.+|++|+|.|.+ .+.| .+.|.|+|. +.. + ......|+.+..+ .+|.
T Consensus 6 v~~~~~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~ 84 (256)
T 3umt_A 6 LQQSGLELVKPGASVKISCKT-SGYTFTEYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDKSSSTAYLE 84 (256)
T ss_dssp EEECCCEEECTTCCEEEEEEE-ESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEE
T ss_pred EEccCceEEcCCCCEEEEEEE-ecccccccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEecCCCEEEEE
Confidence 345667889999999999998 5655 679999983 221 1 0112356766643 2499
Q ss_pred EcCCCCCCCeEEEEEEEecC---ceeeeEeEEEEEEc----------------CCeEEeCCCceEEeCCCeEEEEEEecc
Q psy574 65 IQDSRKTDDGRYQCVVKNVA---GTRESTDAVLRVLV----------------KPYIIRGPKDTTVSASSIIVFECSVGG 125 (977)
Q Consensus 65 I~~v~~~D~G~Y~C~a~n~~---g~~~s~~~~l~V~~----------------~P~~~~~p~~~~v~~G~~v~l~C~v~g 125 (977)
|.+++.+|+|.|+|.+.+.. .......+.|.|.. +|.+...|....+.+|++++|.|.+.+
T Consensus 85 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~ 164 (256)
T 3umt_A 85 LRSLTSEDSAVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLTQSPSSLSASLGERVSITCRASQ 164 (256)
T ss_dssp ECSCCGGGCEEEEEEECCSTTCCSCEECCCEEEEECC---------------CCCCEEEECSEEEECTTCCEEEEEEESS
T ss_pred ECCCCcccCEEEEEEEccCCCccccEECCCEEEEEcCCCccccCcccCCCCccccEEEcCCCeEEEECCCCEEEEEEEec
Confidence 99999999999999999872 11223456788875 677888888899999999999999998
Q ss_pred cCceEEEEEECC--eeC-------------CCCceEEe---ccceEEEccCccCCCeEEEEEEEeCCee-EEEEEEEEEe
Q psy574 126 DAVLTVHWKRLG--SAM-------------PEDRMSVL---PSRSLQLSDVRLEDAGEYVCEAENAVGK-ISASATLTVQ 186 (977)
Q Consensus 126 ~p~~~i~W~k~~--~~l-------------~~~~~~~~---~~~~L~I~~v~~~D~G~Y~C~a~n~~g~-~~~~~~L~V~ 186 (977)
.+.+.+.|+|+. ..+ ..+++... ...+|.|.+++.+|+|.|+|.|.|.... ......|.|.
T Consensus 165 ~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~fg~gt~L~V~ 244 (256)
T 3umt_A 165 DIGSNLNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSRSGSDYSLTISSLESEDFVDYYCLQYASSPPTFGGGTKLEIK 244 (256)
T ss_dssp CCTTCEEEEEECTTCCEEEEEETTTEECTTSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEECSSSSCEECCCEEEEEC
T ss_pred CCCcEEEEEEECCCCCcEEEEEeccccCCccCCCEEEecCCCEEEEEECCCChhHCEEEEEEEeeCCCcEECCCEEEEEE
Confidence 888899999952 211 12444433 2246999999999999999999986543 3445778777
Q ss_pred eCC
Q psy574 187 MAP 189 (977)
Q Consensus 187 ~~p 189 (977)
.++
T Consensus 245 ~~~ 247 (256)
T 3umt_A 245 RAA 247 (256)
T ss_dssp ---
T ss_pred CCC
Confidence 544
No 264
>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*
Probab=99.76 E-value=5.6e-18 Score=174.12 Aligned_cols=169 Identities=20% Similarity=0.245 Sum_probs=128.6
Q ss_pred ccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCC---E--Eee-------cCCCceEEEec---CcEEEEcCCCC
Q psy574 6 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNG---H--PID-------FENSKRLRLVD---GTNLAIQDSRK 70 (977)
Q Consensus 6 ~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g---~--~l~-------~~~~~r~~~~~---~g~L~I~~v~~ 70 (977)
+.+...|..+.+.+|++++|.|.+ .+.|.+.|.|+|++ . .+. .....|+.+.. +.+|.|.+++.
T Consensus 2 ~~v~~~p~~~~v~~G~~v~L~C~~-~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~ 80 (213)
T 3r06_A 2 IQMTQSPSSLPASLGDRVTINCQA-SQDISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSGSGRDSSFTISSLES 80 (213)
T ss_dssp CCEEEECSEEEECTTCCEEEEEEE-SSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred CeeEeCCCEEEecCCCcEEEEEEe-CCCcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEeccCCEEEEEECCCCc
Confidence 456677889999999999999999 67789999999832 1 111 11245666553 34799999999
Q ss_pred CCCeEEEEEEEecCceeeeEeEEEEE---EcCCeEEeCCCceEEeCCCeEEEEEEecccC--ceEEEEEECCeeCCCCc-
Q psy574 71 TDDGRYQCVVKNVAGTRESTDAVLRV---LVKPYIIRGPKDTTVSASSIIVFECSVGGDA--VLTVHWKRLGSAMPEDR- 144 (977)
Q Consensus 71 ~D~G~Y~C~a~n~~g~~~s~~~~l~V---~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p--~~~i~W~k~~~~l~~~~- 144 (977)
+|+|.|+|.|.|..+......+.|.| ..+|.+...+....+..|+.++|.|.+.|.+ .+.+.|+|++..+..+.
T Consensus 81 ~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~~~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~ 160 (213)
T 3r06_A 81 EDIGSYYCQQYYNYPWTFGPGTKLEIKRADAKPTVSIFPPSSEQLGTGSATLVCFVNNFYPKDINVKWKVDGSEKRDGVL 160 (213)
T ss_dssp GGCSEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCEEEEEEETTEEECTTEE
T ss_pred ccCEEEEEecccCCceEEcCCceEEEeccCCCceeeeeCCCceecCCCCcEEEEEEeeecCCceEEEEEECCcccCCceE
Confidence 99999999999876555555677888 5678887777666677899999999997754 35899999999886532
Q ss_pred eEE--e--c------cceEEEccCccCCCeEEEEEEEeCCe
Q psy574 145 MSV--L--P------SRSLQLSDVRLEDAGEYVCEAENAVG 175 (977)
Q Consensus 145 ~~~--~--~------~~~L~I~~v~~~D~G~Y~C~a~n~~g 175 (977)
... . . ...|.|.....+|.|.|+|.|.|...
T Consensus 161 ~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~v~n~~~ 201 (213)
T 3r06_A 161 QSVTDQDSKDSTYSLSSTLSLTKADYERHNLYTCEVTHKTS 201 (213)
T ss_dssp EEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTC
T ss_pred eccCceeCCCCcEEEEEEEEeCHHHhccCCeEEEEEEeccc
Confidence 111 1 1 13688888888999999999999763
No 265
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3
Probab=99.76 E-value=5.4e-18 Score=168.38 Aligned_cols=154 Identities=11% Similarity=0.101 Sum_probs=120.9
Q ss_pred eEEeCCCeEEEEEEec--ccCceEEEEEECCeeC-----------CCCceEEeccceEEEccCccCCCeEEEEEEEeCCe
Q psy574 109 TTVSASSIIVFECSVG--GDAVLTVHWKRLGSAM-----------PEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVG 175 (977)
Q Consensus 109 ~~v~~G~~v~l~C~v~--g~p~~~i~W~k~~~~l-----------~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g 175 (977)
+.+.+|++++|.|... +.+.+.|.|+|++..+ ..+++.+..+++|.|.+++.+|+|.|+|.|.|..|
T Consensus 6 v~~~~G~~v~L~c~~~~~~~~~~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~~~~gsL~I~~v~~~D~G~Y~C~~~n~~g 85 (176)
T 1hng_A 6 VWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNG 85 (176)
T ss_dssp EEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTSCEEESSCCGGGCEEEEEEEEETTC
T ss_pred EEEEcCCcEEEcCCCCCcccccccEEEEeCCceeEEEcCCCeecCCCCeEEECCCCcEEEcccccccCEEEEEEEEeCCC
Confidence 4678999999999542 2567899999998643 24677777788899999999999999999999988
Q ss_pred eE--EEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCccccEEEEEccCCceEEE
Q psy574 176 KI--SASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLK 253 (977)
Q Consensus 176 ~~--~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~s~L~ 253 (977)
.. +..+.|.|..++. .......+..++|.|.+.+.|.+.+.|+++|..+... . .+.
T Consensus 86 ~~~~~~~~~l~V~~~~~-----~p~i~~~~~~v~L~C~~~g~p~p~i~W~~~g~~l~~~---------------~--~~~ 143 (176)
T 1hng_A 86 TRILNKALDLRILEMVS-----KPMIYWECSNATLTCEVLEGTDVELKLYQGKEHLRSL---------------R--QKT 143 (176)
T ss_dssp CEEEEEEEEEEEECCCC-----CCEEEEETTTTEEEEECSSCSSCEEEEEETTEEEEEE---------------S--SSE
T ss_pred CEEEEEEEEEEEeCCCC-----CCEEEecCCcEEEEEEecCCCCcEEEEEECCEECCCC---------------C--cEE
Confidence 75 6778888876432 1112234556999999999999999999999876421 1 245
Q ss_pred EeecccCCCCeEEEEEEEcCCCceeEEEEEEE
Q psy574 254 IQNVSRTAAPLIILCLGVNAAGSDLARASLTV 285 (977)
Q Consensus 254 I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V 285 (977)
|.++..+|+|.|+ |.|.|..|.....+.|.+
T Consensus 144 i~~~~~~d~G~Y~-C~a~N~~g~~~~~~~l~~ 174 (176)
T 1hng_A 144 MSYQWTNLRAPFK-CKAVNRVSQESEMEVVNC 174 (176)
T ss_dssp EEEECSCCSSCEE-EEEEETTEEEEEEECCCC
T ss_pred EEEEEccCCeEEE-EEEEecCCCceecccccC
Confidence 6678899999999 999999998887766544
No 266
>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1
Probab=99.76 E-value=1.4e-17 Score=175.63 Aligned_cols=176 Identities=18% Similarity=0.287 Sum_probs=128.8
Q ss_pred ecccceEEeCCCcEEEEEECCCCCC--CCeEEEEeCC--EEe---------------ecCCCceEEEecC-----cEEEE
Q psy574 10 VQPKSQRVAAGDTALLECGPPRGHP--EPTLVWKKNG--HPI---------------DFENSKRLRLVDG-----TNLAI 65 (977)
Q Consensus 10 ~~p~~~~v~~G~~v~L~C~~~~g~P--~~~v~W~k~g--~~l---------------~~~~~~r~~~~~~-----g~L~I 65 (977)
.+|..+.+.+|++++|.|.+ .+.| .+.|.|+|++ ..+ ......|+.+..+ .+|.|
T Consensus 7 ~~p~~~~v~~G~~v~L~C~~-~g~p~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I 85 (247)
T 2ghw_B 7 VQSGGGVVQPGKSLRLSCAA-SGFAFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQM 85 (247)
T ss_dssp EEECCEEECTTCCEEEEEEE-ESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETTTTEEEEEE
T ss_pred EecCCEEEecCCcEEEEEEe-ccccCCCceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCCCCEEEEEE
Confidence 45667999999999999998 6666 6789999842 111 1123457776542 47999
Q ss_pred cCCCCCCCeEEEEEEEecCcee-eeEeEEEEEEcC---------------CeEEeCCCceEEeCCCeEEEEEEecccCce
Q psy574 66 QDSRKTDDGRYQCVVKNVAGTR-ESTDAVLRVLVK---------------PYIIRGPKDTTVSASSIIVFECSVGGDAVL 129 (977)
Q Consensus 66 ~~v~~~D~G~Y~C~a~n~~g~~-~s~~~~l~V~~~---------------P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~ 129 (977)
.+++.+|+|.|+|.|.|..+.. ....+.|.|..+ +.+...|....+.+|++++|.|.+.+.|.+
T Consensus 86 ~~v~~~D~G~Y~C~~~n~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~ 165 (247)
T 2ghw_B 86 NSLRAEDTAVYYCARDRSYYLDYWGQGTLVTVSSGGGGSGGGGSGGGGSETTLTQSPATLSLSPGERATLSCRASQSVRS 165 (247)
T ss_dssp CSCCGGGCEEEEEEEEETTEEEEECCCEEEEECSCC------------CCCCEEEECSEEEECTTSCEEEEEEESSCCTT
T ss_pred CcCCHHHCEEEEEeeeccCCccccCCceEEEEecccccccccccCCCCcceEEEccCCEEEecCCCcEEEEEEeCCCccc
Confidence 9999999999999999873321 234457888753 345666778889999999999999998888
Q ss_pred EEEEEE--CCeeC-------------CCCceEEe---ccceEEEccCccCCCeEEEEEEEeCCee-EEEEEEEEEe
Q psy574 130 TVHWKR--LGSAM-------------PEDRMSVL---PSRSLQLSDVRLEDAGEYVCEAENAVGK-ISASATLTVQ 186 (977)
Q Consensus 130 ~i~W~k--~~~~l-------------~~~~~~~~---~~~~L~I~~v~~~D~G~Y~C~a~n~~g~-~~~~~~L~V~ 186 (977)
.+.|+| ++..+ ...++.+. ...+|.|.+++.+|+|.|+|.|.|.... ......|.|.
T Consensus 166 ~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~~~~~g~~t~l~V~ 241 (247)
T 2ghw_B 166 NLAWYQQKPGQAPRPLIYDASTRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQRSNWPPTFGQGTKVEVK 241 (247)
T ss_dssp CEEEEEECTTSCCEEEEETTTEECTTCCTTEEEECSSSEEEEEECSCCGGGCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred eEEEEEECCCCCcEEEEEEeccCCCccCCCEEEecCCCeEEEEECcCCHHHCEEEEEEEccCCCceEcCCEEEEEC
Confidence 999999 45433 12345443 2346999999999999999999986433 3344566665
No 267
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Probab=99.76 E-value=9.6e-18 Score=170.64 Aligned_cols=166 Identities=19% Similarity=0.304 Sum_probs=121.0
Q ss_pred ceEEeCCCcEEEEEECCC---CCCCCeEEEEeCCEEeecC----------CCceEEE--ecCcEEEEcCCCCCCCeEEEE
Q psy574 14 SQRVAAGDTALLECGPPR---GHPEPTLVWKKNGHPIDFE----------NSKRLRL--VDGTNLAIQDSRKTDDGRYQC 78 (977)
Q Consensus 14 ~~~v~~G~~v~L~C~~~~---g~P~~~v~W~k~g~~l~~~----------~~~r~~~--~~~g~L~I~~v~~~D~G~Y~C 78 (977)
.+.+.+|++++|.|.+.. +.|.+.+.|+|++..+... ..+|..+ ..+++|.|.+++.+|+|.|+|
T Consensus 3 ~v~v~~G~~v~L~C~~~~~~~~~~~~~~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~L~I~~v~~~D~G~Y~C 82 (201)
T 1dr9_A 3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYEC 82 (201)
T ss_dssp EEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGGGCEEEEE
T ss_pred eEEEEeCCCEEEecccCCCcccccccEEEEEeCCcEEEEEeCCceeecCcccceeEEccCCCcEEEEecccchhCeEEEE
Confidence 578999999999998832 3467899999999887311 1234443 235689999999999999999
Q ss_pred EEEecCceee----eEeEEEEEEcC---CeEEeCCCceEEeCCCeEEEEEEe-cccCceEEEEEECCeeCCCCceEEe--
Q psy574 79 VVKNVAGTRE----STDAVLRVLVK---PYIIRGPKDTTVSASSIIVFECSV-GGDAVLTVHWKRLGSAMPEDRMSVL-- 148 (977)
Q Consensus 79 ~a~n~~g~~~----s~~~~l~V~~~---P~~~~~p~~~~v~~G~~v~l~C~v-~g~p~~~i~W~k~~~~l~~~~~~~~-- 148 (977)
.|.|..|... ...+.|.|..+ |.+... ....|+.+.|.|.+ .|.|.|.|.|+|++..+........
T Consensus 83 ~~~~~~g~~~~~~~~~~~~l~V~~~~~~p~~~~~----~~~~g~~~~l~C~~~~g~P~p~i~W~k~g~~l~~~~~~~~~~ 158 (201)
T 1dr9_A 83 VVLKYEKDAFKREHLAEVTLSVKADFPTPSISDF----EIPTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQD 158 (201)
T ss_dssp EEEECCTTSCEEEEEEEEEEEEECCCCCCEEEEE----ECSSTTEEEEEEEEEEESSCEEEEEEESSCEECCSEEEEEEC
T ss_pred EEEcCCCCccccccccEEEEEEcCCCCCCceEec----cCCCCCeEEEEEecCCccCCCEEEEEECCEECccccceEEec
Confidence 9999765433 34567777765 333221 12458899999999 5999999999999998875433332
Q ss_pred cc-ceE---EEccCccCCCeEEEEEEEeCCeeEEEEEEE
Q psy574 149 PS-RSL---QLSDVRLEDAGEYVCEAENAVGKISASATL 183 (977)
Q Consensus 149 ~~-~~L---~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L 183 (977)
.+ +.+ .+..+..+|.|.|+|.|.|..+..++.+.+
T Consensus 159 ~~~~~~~~~~~~~v~~~d~g~Y~C~a~n~~~~~s~~~~~ 197 (201)
T 1dr9_A 159 PETELYAVSSKLDFNMTTNHSFMCLIKYGHLRVNQTFNW 197 (201)
T ss_dssp TTTCCEEEEEEEEEETTSCEEEEEEEEETTCCEEEEEEE
T ss_pred CCCcEEEEEEEEEEEecCCCEEEEEEecCcceeeeEEec
Confidence 22 222 234556789999999999999887766554
No 268
>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1
Probab=99.76 E-value=6.7e-18 Score=177.13 Aligned_cols=165 Identities=17% Similarity=0.239 Sum_probs=125.5
Q ss_pred cceecccceEEeCCCcEEEEEECCCCCC----CCeEEEEeCC--E---Eee-------cCCCceEEEecC---cEEEEcC
Q psy574 7 EFRVQPKSQRVAAGDTALLECGPPRGHP----EPTLVWKKNG--H---PID-------FENSKRLRLVDG---TNLAIQD 67 (977)
Q Consensus 7 ~~~~~p~~~~v~~G~~v~L~C~~~~g~P----~~~v~W~k~g--~---~l~-------~~~~~r~~~~~~---g~L~I~~ 67 (977)
.|...|.++.+.+|++|+|.|.+ .+.| .+.|.|+|++ . .+. .....|+.+..+ .+|.|.+
T Consensus 3 ~v~~~p~~~~v~~G~~v~L~C~~-~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~ 81 (240)
T 1moe_A 3 VLTQSPASLAVSLGQRATMSCRA-GESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDP 81 (240)
T ss_dssp CEEEECSEEEECTTSCEEEEEEE-SSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESS
T ss_pred ceEeeCCeEEecCCCCEEEEEeC-CCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEecCCeEEEEEcC
Confidence 46778889999999999999999 6777 7899999952 2 111 112456766543 2799999
Q ss_pred CCCCCCeEEEEEEEecCceeeeEeEEEEEEcCC------eEEeCCCceEEeCCCeEEEEEEecccC--ceEEEEEECC--
Q psy574 68 SRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKP------YIIRGPKDTTVSASSIIVFECSVGGDA--VLTVHWKRLG-- 137 (977)
Q Consensus 68 v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V~~~P------~~~~~p~~~~v~~G~~v~l~C~v~g~p--~~~i~W~k~~-- 137 (977)
++.+|+|.|+|.+.|..+...+..+.|.|..++ .+...|....+.+|++++|.|.+.|.| .+.+.|+|+.
T Consensus 82 v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g 161 (240)
T 1moe_A 82 VEADDVATYYCQQTNEDPYTFGGGTKLEIKGGGSGGGGEVQLQQSGAELVEPGASVKLSCTASGFNIKDTYMHWVKQRPE 161 (240)
T ss_dssp CCGGGCEEEEEEECSSSSCCBCCCEEEEECCCSCCCCCCCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTT
T ss_pred CChhhCEEEEEEEccCCceeecCCEEEEEecCCCCCCceEEEeCCCceEEeCCCcEEEEEEEcCccCCCCEEEEEEECCC
Confidence 999999999999998865444455788887643 355567788899999999999998876 4589999962
Q ss_pred eeC------------------CCCceEEecc-----ceEEEccCccCCCeEEEEEEEe
Q psy574 138 SAM------------------PEDRMSVLPS-----RSLQLSDVRLEDAGEYVCEAEN 172 (977)
Q Consensus 138 ~~l------------------~~~~~~~~~~-----~~L~I~~v~~~D~G~Y~C~a~n 172 (977)
..+ ...++.+..+ .+|.|.+++.+|+|.|+|.|.+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~ 219 (240)
T 1moe_A 162 QGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTSEDTAVYYCAPFG 219 (240)
T ss_dssp SCCEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECS
T ss_pred CCcEEEEEEcccCCccccCccccccEEEEEcccCCEEEEEECcCCHHHCEEEEEEEEe
Confidence 221 1235554422 4799999999999999999984
No 269
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*
Probab=99.76 E-value=1.3e-17 Score=170.61 Aligned_cols=170 Identities=12% Similarity=0.178 Sum_probs=133.2
Q ss_pred CCceEEeCCCeEEEEEEecccCceEEEEEECCeeC--------------------CCCceEEeccceEEEccCccCCCeE
Q psy574 106 PKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAM--------------------PEDRMSVLPSRSLQLSDVRLEDAGE 165 (977)
Q Consensus 106 p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l--------------------~~~~~~~~~~~~L~I~~v~~~D~G~ 165 (977)
+....+.+|+++.|.|.+.+.+.+.+.|+|++... ..++..+..+++|.|.+++.+|+|.
T Consensus 6 ~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~~~D~G~ 85 (208)
T 3r4d_A 6 AVPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDMGV 85 (208)
T ss_dssp EESSEEETTCCEEEEEECCCSSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEECTTSCEEECSCCGGGCEE
T ss_pred CccceeecCCcEEEEEeCCCCCceEEEeccCCCCCccceEEEEecCCCccccCccccceeEEecCCeEEEccccccCCeE
Confidence 34467899999999999888888999999975422 1345556667899999999999999
Q ss_pred EEEEEEeCC-eeEEEEEEEEEeeC---CeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCccccEE
Q psy574 166 YVCEAENAV-GKISASATLTVQMA---PIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQ 241 (977)
Q Consensus 166 Y~C~a~n~~-g~~~~~~~L~V~~~---p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~ 241 (977)
|+|.+.+.. +.....+.|.|..+ |.+...+.. +.+|+.++|.|.+.+.| +.+.|++++..+. ...++.
T Consensus 86 Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~--~~~g~~v~l~C~~~~~p-p~i~W~~~g~~l~-----~~~~~~ 157 (208)
T 3r4d_A 86 YTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTT--VKELDSVTLTCLSNDIG-ANIQWLFNSQSLQ-----LTERMT 157 (208)
T ss_dssp EEEEEECSSCEEEEEEEEEEEECCCCCCEEEESCSS--CCTTCCEEEEEECSCTT-CEEEEEETTEECC-----CCSSEE
T ss_pred EEEEEEcccCceeEEEEEEEeccCCCCCEEecCCce--EeeCCCEEEEEECCCCC-CceEEEECCEeCC-----CCCCeE
Confidence 999999985 56778888999855 455544444 88999999999999876 7999999998763 234555
Q ss_pred EEEccCCceEEEEeecccCCCCeEEEEEEEcCCCcee-EEEEEEEEC
Q psy574 242 AEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDL-ARASLTVSG 287 (977)
Q Consensus 242 ~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~-~~~~l~V~~ 287 (977)
+... ...|.|.++..+|+|.|+ |.|.|..|... ..+.|.|..
T Consensus 158 ~~~~---~~~L~i~~v~~~d~G~Y~-C~a~N~~g~~~s~~~~l~v~~ 200 (208)
T 3r4d_A 158 LSQN---NSILRIDPIKREDAGEYQ-CEISNPVSVRRSNSIKLDIIF 200 (208)
T ss_dssp EETT---TTEEEESSCCGGGCEEEE-EEEECTTCCEECCCEEECCC-
T ss_pred EcCC---CCEEEEeccCHHhCeEEE-EEEecCCCcccCCceeeeEEe
Confidence 4432 248999999999999999 99999999864 345666555
No 270
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}
Probab=99.75 E-value=5.6e-18 Score=169.76 Aligned_cols=159 Identities=17% Similarity=0.187 Sum_probs=124.7
Q ss_pred EcCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceEEeccceEEEccCccCCCeEEEEEEEeCCee
Q psy574 97 LVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGK 176 (977)
Q Consensus 97 ~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~ 176 (977)
..+|.+...|.. .+.+|++++|.|.+.+ +.+.+.|+|++.. ....++.|.|.+++.+|+|.|+|.|.|..|.
T Consensus 6 ~~~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~W~k~g~~------~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~ 77 (184)
T 2gi7_A 6 LPKPSLQALPSS-LVPLEKPVTLRCQGPP-GVDLYRLEKLSSS------RYQDQAVLFIPAMKRSLAGRYRCSYQNGSLW 77 (184)
T ss_dssp BCCCEEEEESCS-EEETTCCEEEEEECST-TCSEEEEEETTTC------CEESSSEEEESSCCGGGCEEEEEEEEETTEE
T ss_pred CCCCeEEeCCCc-cccCCCcEEEEEeCCC-CCCEEEEEECCcc------ccCcccEEEECcCChhhCceEEEEEEcCCCc
Confidence 356777777764 8899999999999987 7789999999876 2236788999999999999999999998764
Q ss_pred --EEEEEEEEEe---eCCeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCccccEEEEEccCCceE
Q psy574 177 --ISASATLTVQ---MAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNL 251 (977)
Q Consensus 177 --~~~~~~L~V~---~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~s~ 251 (977)
.+..+.|.|. .+|.+...| ...+.+|+.++|.|.+.+.+ +.+.|+|+|..+.. ..+... ....
T Consensus 78 ~~~s~~~~l~V~~~~~~p~i~~~p-~~~v~~G~~v~l~C~~~~~~-~~~~w~k~g~~~~~-----~~~~~~-----~~~~ 145 (184)
T 2gi7_A 78 SLPSDQLELVATGVFAKPSLSAQP-GPAVSSGGDVTLQCQTRYGF-DQFALYKEGDPAPY-----KNPERW-----YRAS 145 (184)
T ss_dssp BCCCCCEEEEEESSSCCCEEEEEC-CCSSCCTTCEEEEEECSSCC-CEEEEEECCCCTTS-----CCCCEE-----EEES
T ss_pred cCCCCCEEEEecCcCCCCEEEeCC-CceecCCCcEEEEEEcCCCC-cEEEEEECCCcCcc-----eecCCC-----ceEE
Confidence 3456778875 356676666 55778999999999987654 69999999976532 111111 1238
Q ss_pred EEEeecccCCCCeEEEEEEEcCCCc
Q psy574 252 LKIQNVSRTAAPLIILCLGVNAAGS 276 (977)
Q Consensus 252 L~I~~v~~~d~G~Y~~C~a~n~~g~ 276 (977)
|.|.+++.+|+|.|+ |.|.|..+.
T Consensus 146 L~i~~v~~~D~G~Y~-C~a~n~~~~ 169 (184)
T 2gi7_A 146 FPIITVTAAHSGTYR-CYSFSSRDP 169 (184)
T ss_dssp SSEEEETTCCSEEEE-EEEECTTST
T ss_pred EEEccCCccCCeEEE-EEEEeCCCC
Confidence 999999999999999 999998653
No 271
>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*
Probab=99.75 E-value=1.2e-17 Score=171.73 Aligned_cols=174 Identities=19% Similarity=0.248 Sum_probs=131.8
Q ss_pred CeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEEC--CeeC-------------CCCceEEe---ccceEEEccCccC
Q psy574 100 PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRL--GSAM-------------PEDRMSVL---PSRSLQLSDVRLE 161 (977)
Q Consensus 100 P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~--~~~l-------------~~~~~~~~---~~~~L~I~~v~~~ 161 (977)
|.+...| ...+.+|++++|.|.+.+.|.+.+.|+|. +... ..+++.+. .+.+|.|.+++.+
T Consensus 2 ~~v~~~~-~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~ 80 (213)
T 3mj8_L 2 YTLTQPP-LVSVALGQKATITCSGDKLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSNSGNMATLTISKAQAG 80 (213)
T ss_dssp CCBBCCS-EEEEETTSCEEEEEECSSTTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGG
T ss_pred eeEEeCC-cEEEeCCCCEEEEEEcCCCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEecCCEEEEEECCCChh
Confidence 3455566 78999999999999999999999999993 2211 22355432 3457999999999
Q ss_pred CCeEEEEEEEeCCe---eEEEEEEEEEe----eCCeEEecCCCcEEeeCCeEEEEEEEecC-CC-CeEEEEEcCeeeeec
Q psy574 162 DAGEYVCEAENAVG---KISASATLTVQ----MAPIVRERPSDLRLEVGRDAVFLCGIEGS-PP-PSTFWMLEGNRSLIY 232 (977)
Q Consensus 162 D~G~Y~C~a~n~~g---~~~~~~~L~V~----~~p~~~~~p~~~~v~~G~~v~L~C~~~g~-p~-~~i~W~~~g~~~~~~ 232 (977)
|+|.|+|.|.|..+ .....+.|.|. .+|.+...+....+.+|+.++|.|.+.+. |+ +.+.|+++|..+...
T Consensus 81 D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~ 160 (213)
T 3mj8_L 81 DEADYYCQSWDGTNSAWVFGSGTKVTVLGQPNAAPSVTLFPPSSEELKTNQATLVCMINGFYPADVAVTWEADGTPITQG 160 (213)
T ss_dssp GCEEEEEEEEETTTTEEEEBCCEEEEEECSCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTT
T ss_pred hCEEEEEEeccCCcceeEEcCceEEEEeCCCCCCCeEEccCCCcccccCCcEEEEEEeeceeCCCeEEEEEcCCcccCCC
Confidence 99999999999887 45667889998 78888887777766699999999999885 33 499999999876421
Q ss_pred CCC-----ccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEE
Q psy574 233 PGD-----RVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARA 281 (977)
Q Consensus 233 ~~~-----~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~ 281 (977)
... ..+.+... +.|.|..++.+|.|.|+ |.|.|..+....++
T Consensus 161 ~~~~~~~~~~~~~~~~------s~L~i~~~~~~d~G~Y~-C~a~n~~~~~~~~~ 207 (213)
T 3mj8_L 161 VKTTQPSKSDSKYMAT------SYLTMTADAWKSRNTFI-CKVTHGGNTVEKSL 207 (213)
T ss_dssp EEECCCEEETTEEEEE------EEEEEESHHHHSCSCEE-EEEEETTEEEEEEE
T ss_pred cccCCcCccCCcEEEE------EEEEEeHHHcCCCCEEE-EEEEECCccEEeee
Confidence 000 11122221 37999999999999999 99999986655443
No 272
>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*
Probab=99.75 E-value=8.3e-18 Score=175.92 Aligned_cols=170 Identities=16% Similarity=0.213 Sum_probs=126.8
Q ss_pred ccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCC--E---Eee-------cCCCceEEEe---cCcEEEEcCCCC
Q psy574 6 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNG--H---PID-------FENSKRLRLV---DGTNLAIQDSRK 70 (977)
Q Consensus 6 ~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g--~---~l~-------~~~~~r~~~~---~~g~L~I~~v~~ 70 (977)
..+...|..+.+.+|++++|.|.+ .+.|.+.|.|+|++ . .+. .....|+.+. .+++|.|.+++.
T Consensus 25 ~~v~~~p~~~~v~~G~~v~L~C~~-~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~ 103 (237)
T 3sob_L 25 IQMTQSPSSLSASVGDRVTITCRA-SQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQP 103 (237)
T ss_dssp CCEEEECSEEEEETTCCEEEEEEE-SSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred ceEEeCCCeEEEeCCCcEEEEEec-CCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEEcCCCEEEEEECCCCh
Confidence 345666888999999999999999 67788999999842 1 111 1224566655 345799999999
Q ss_pred CCCeEEEEEEEecCceeeeEeEEEEEE---cCCeEEeCCCceEEeCCCeEEEEEEecc-cC-ceEEEEEECCeeCCCCce
Q psy574 71 TDDGRYQCVVKNVAGTRESTDAVLRVL---VKPYIIRGPKDTTVSASSIIVFECSVGG-DA-VLTVHWKRLGSAMPEDRM 145 (977)
Q Consensus 71 ~D~G~Y~C~a~n~~g~~~s~~~~l~V~---~~P~~~~~p~~~~v~~G~~v~l~C~v~g-~p-~~~i~W~k~~~~l~~~~~ 145 (977)
+|+|.|+|.+.+..+......+.|.|. .+|.+...+....+.+|+.++|.|.+.| .| .+.|.|+|++..+..+..
T Consensus 104 ~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~l~C~~~~~~p~~~~v~W~k~g~~~~~~~~ 183 (237)
T 3sob_L 104 EDFATYYCQQSYTTPPTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQ 183 (237)
T ss_dssp GGCEEEEEEECSSSSCEECCCEEEEEECCCBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEE
T ss_pred hhCeEEEEeeccCCceEEcCcEEEEEecCCCCCceEEeCCChhhccCCceEEEEEEcccCCCceEEEEEECCCCCCCcee
Confidence 999999999988765444455677774 5667766555555567999999999977 45 589999999998865321
Q ss_pred E-----------EeccceEEEccCccCCCeEEEEEEEeCCee
Q psy574 146 S-----------VLPSRSLQLSDVRLEDAGEYVCEAENAVGK 176 (977)
Q Consensus 146 ~-----------~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~ 176 (977)
. ......|.|..+..+|.|.|+|.|.|....
T Consensus 184 ~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~ 225 (237)
T 3sob_L 184 ESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLS 225 (237)
T ss_dssp EEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCS
T ss_pred ecccccccCCCcEEEEEEEEEcHHHccCCCcEEEEEeeCCCC
Confidence 1 111245889999999999999999998653
No 273
>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*
Probab=99.75 E-value=1.1e-17 Score=175.81 Aligned_cols=167 Identities=19% Similarity=0.219 Sum_probs=122.8
Q ss_pred ccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCC--E---Eee-------cCCCceEEEec---CcEEEEcCCCC
Q psy574 6 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNG--H---PID-------FENSKRLRLVD---GTNLAIQDSRK 70 (977)
Q Consensus 6 ~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g--~---~l~-------~~~~~r~~~~~---~g~L~I~~v~~ 70 (977)
..+.+.|.++.+.+|++|+|.|.+ .+.|.+.|.|+|+. . .+. .....|+.+.. +.+|.|.+++.
T Consensus 2 ~~v~~~p~~~~v~~G~~v~L~C~~-~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~ 80 (242)
T 2znx_A 2 IVLTQSPATLSVTPGNSVSLSCRA-SQSIGNNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVET 80 (242)
T ss_dssp CCEEEECSEEEECTTCCEEEEEEE-SSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCG
T ss_pred CcEEEcCCeEEEcCCCcEEEEEEe-CCCCCceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEecCCCEEEEEECCCCh
Confidence 356788999999999999999999 78888999999953 1 111 11245676653 24799999999
Q ss_pred CCCeEEEEEEEecCceeeeEeEEEEEEcCCe-------------EEeCCCceEEeCCCeEEEEEEecccC--ceEEEEEE
Q psy574 71 TDDGRYQCVVKNVAGTRESTDAVLRVLVKPY-------------IIRGPKDTTVSASSIIVFECSVGGDA--VLTVHWKR 135 (977)
Q Consensus 71 ~D~G~Y~C~a~n~~g~~~s~~~~l~V~~~P~-------------~~~~p~~~~v~~G~~v~l~C~v~g~p--~~~i~W~k 135 (977)
+|+|.|+|.+.|..+...+..+.|.|..+|. ++..+....+.+|++++|.|.+.+.+ .+.+.|+|
T Consensus 81 ~D~G~Y~C~~~n~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k 160 (242)
T 2znx_A 81 EDFGMYFCQQSNSXPYTFGGGTKLEITGGGGSGGGGSGGGGSDIQLQESGPSLVKPSQTLSLTCSVTGDSITSDYXSXIR 160 (242)
T ss_dssp GGCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEEECCSEECTTSCEEEEEEEESSCGGGSCEEEEE
T ss_pred HHCEEEEEeEecCCceEECCCEEEEEcCCCCCCcccccccccceeeecCCcceecCCCeEEEEEEEEccccCCcceeeEe
Confidence 9999999999987554334456788876553 34444456799999999999998875 57899999
Q ss_pred CC--eeC-----------------CCCceEEec-----cceEEEccCccCCCeEEEEEEEeC
Q psy574 136 LG--SAM-----------------PEDRMSVLP-----SRSLQLSDVRLEDAGEYVCEAENA 173 (977)
Q Consensus 136 ~~--~~l-----------------~~~~~~~~~-----~~~L~I~~v~~~D~G~Y~C~a~n~ 173 (977)
+. ..+ ..+++.+.. ..+|.|.+++.+|+|.|+|.|.|.
T Consensus 161 ~~~~~~~~~l~~~~~~g~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~ 222 (242)
T 2znx_A 161 KFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTEDTATYYCANXDG 222 (242)
T ss_dssp ECTTSCEEEEEEECTTSCEEECGGGTTCEEEEEETTTTEEEEEECSCCGGGCEEEEEEETTS
T ss_pred eCCCCCcEEEEEEecCCccccCccccCcEEEEecCCCCEEEEEECCCCcCcCEEEEEeccCC
Confidence 53 221 134555432 248999999999999999999873
No 274
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A
Probab=99.75 E-value=1.2e-17 Score=164.84 Aligned_cols=163 Identities=17% Similarity=0.261 Sum_probs=129.2
Q ss_pred CCeEEeCCCceEEeCCCeEEEEEEecccC-ceEEEEEECCeeCCCCceEEeccceEEEccCccCCCeEEEEEEEeCCeeE
Q psy574 99 KPYIIRGPKDTTVSASSIIVFECSVGGDA-VLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKI 177 (977)
Q Consensus 99 ~P~~~~~p~~~~v~~G~~v~l~C~v~g~p-~~~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~ 177 (977)
+|.+...|....+.+|+++.|.|.+.+.| .+.+.|+|++..+... ...+.|.+++.+|+|.|+|.+.|.. .
T Consensus 4 ~p~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~~~~W~~~g~~~~~~------~~~~~~~~~~~~d~G~Y~C~~~~~~--~ 75 (170)
T 3ry4_A 4 KAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTH------TQPSYRFKANNNDSGEYTCQTGQTS--L 75 (170)
T ss_dssp BCEEEEESCCSEEETTCEEEEEEESCCCSSSSCEEEEETTEECTTC------CSSEEEEECCGGGCEEEEEEETTSB--C
T ss_pred CCEEEeCCCCeEEECCCcEEEEEEecCCCCcceEEEEECCeEcccC------ccceEEEecccccCeEEEEEEeCCC--c
Confidence 45666777778899999999999998876 6789999999988753 4567788999999999999998754 3
Q ss_pred EEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEE-ecCCCCeEEEEEcCeeeeecCCCccccEEEEEccCCceEEEEee
Q psy574 178 SASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGI-EGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQN 256 (977)
Q Consensus 178 ~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~-~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~s~L~I~~ 256 (977)
+..+.|.|..++.+... ....+.+|+.++|.|.+ .+.|.+.+.|+++|..+.... ....|.|.+
T Consensus 76 s~~~~l~v~~~~~~~~~-~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~--------------~~~~L~i~~ 140 (170)
T 3ry4_A 76 SDPVHLTVLFEWLVLQT-PHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFSH--------------LDPTFSIPQ 140 (170)
T ss_dssp CCCEEEEEECCSEEEEC-SCSEECTTCCEEEEEEEGGGCCEEEEEEEETTEEEEEES--------------SCCEEEESS
T ss_pred eEeEEEEEECCceEecC-CCceeecCCeEEEEEECCCCCCCceEEEEECCeEccccC--------------CCCeEEEEe
Confidence 45677888877755544 45678899999999999 456668999999998764211 123899999
Q ss_pred cccCCCCeEEEEEEEcCCCc-eeEEEEEEE
Q psy574 257 VSRTAAPLIILCLGVNAAGS-DLARASLTV 285 (977)
Q Consensus 257 v~~~d~G~Y~~C~a~n~~g~-~~~~~~l~V 285 (977)
++.+|+|.|+ |.|.|..|. .+..+.|.|
T Consensus 141 v~~~d~G~Y~-C~a~n~~g~~~s~~~~l~V 169 (170)
T 3ry4_A 141 ANHSHSGDYH-CTGNIGYTLFSSKPVTITV 169 (170)
T ss_dssp CCGGGCEEEE-EEEEETTEEEECCCEEEEE
T ss_pred ccccCCEEEE-EEEEeCcCccccccEEEEE
Confidence 9999999999 999999886 334445554
No 275
>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...
Probab=99.75 E-value=7.6e-18 Score=173.58 Aligned_cols=168 Identities=17% Similarity=0.225 Sum_probs=121.2
Q ss_pred ceecccceEEeCCCcEEEEEECCCCCC-CCeEEEEeCC--EEee----------cCCCceEEEecC---cEEEEcCCCCC
Q psy574 8 FRVQPKSQRVAAGDTALLECGPPRGHP-EPTLVWKKNG--HPID----------FENSKRLRLVDG---TNLAIQDSRKT 71 (977)
Q Consensus 8 ~~~~p~~~~v~~G~~v~L~C~~~~g~P-~~~v~W~k~g--~~l~----------~~~~~r~~~~~~---g~L~I~~v~~~ 71 (977)
+.. |.++.+.+|++++|.|.+..+.+ .+.|.|+|++ ..+. .....|+.+..+ .+|.|.+++.+
T Consensus 4 v~q-p~~~~v~~G~~v~L~C~v~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~ 82 (216)
T 2xzc_L 4 LTQ-PPSVSAAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSGTSATLGITGLQTG 82 (216)
T ss_dssp BBC-CSEEEECTTCCEEEEEECCTTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGG
T ss_pred EEC-CCcEEecCCCeEEEEEEeecCCCCCCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEeccCCEEEEEECCCCcc
Confidence 344 88899999999999999524443 5799999953 2211 112356666532 37999999999
Q ss_pred CCeEEEEEEEecCc-eeeeEeEEEEEE---cCCeEEeCCCceEEeCCCeEEEEEEecc-cCce-EEEEEECCeeCCCC-c
Q psy574 72 DDGRYQCVVKNVAG-TRESTDAVLRVL---VKPYIIRGPKDTTVSASSIIVFECSVGG-DAVL-TVHWKRLGSAMPED-R 144 (977)
Q Consensus 72 D~G~Y~C~a~n~~g-~~~s~~~~l~V~---~~P~~~~~p~~~~v~~G~~v~l~C~v~g-~p~~-~i~W~k~~~~l~~~-~ 144 (977)
|+|.|+|.|.|..+ ......+.|.|. .+|.+...+.......|+.++|.|.+.| .|.+ .|.|+|++..+..+ .
T Consensus 83 D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~ 162 (216)
T 2xzc_L 83 DEADYYCGTWDSSLNPVFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQ 162 (216)
T ss_dssp GCEEEEEEEECTTSCEEEBCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEE
T ss_pred cCEEEEEEEEeCCCcceECCCEEEEEcCCCCCCceEEeCCChhhccCCcEEEEEEEEeEcCCceEEEEEECCeecCCCee
Confidence 99999999999876 223344567776 4566665443333346999999999987 5554 89999999988765 1
Q ss_pred eEE--e--cc------ceEEEccCccCCCeEEEEEEEeCCee
Q psy574 145 MSV--L--PS------RSLQLSDVRLEDAGEYVCEAENAVGK 176 (977)
Q Consensus 145 ~~~--~--~~------~~L~I~~v~~~D~G~Y~C~a~n~~g~ 176 (977)
... . .+ ..|.|..+..+|+|.|+|.|.|....
T Consensus 163 ~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~ 204 (216)
T 2xzc_L 163 ESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLS 204 (216)
T ss_dssp EEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCS
T ss_pred EecCcccCCCCCEEEEEEEEECHHHhCCCCcEEEEEEcCCCC
Confidence 111 1 11 26899999999999999999997643
No 276
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}
Probab=99.74 E-value=8.2e-18 Score=177.46 Aligned_cols=170 Identities=19% Similarity=0.216 Sum_probs=125.8
Q ss_pred EeCCCceEEeCCCeEEEEEEecc---cCceEEEEEECCeeC-------------------------------CCCceEEe
Q psy574 103 IRGPKDTTVSASSIIVFECSVGG---DAVLTVHWKRLGSAM-------------------------------PEDRMSVL 148 (977)
Q Consensus 103 ~~~p~~~~v~~G~~v~l~C~v~g---~p~~~i~W~k~~~~l-------------------------------~~~~~~~~ 148 (977)
...+.++.+.+|++++|.|.+.+ .|.+.|.|+|++... ..+|..+.
T Consensus 6 ~~~~~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 85 (250)
T 2fbo_J 6 RTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVA 85 (250)
T ss_dssp ECSCSEEEECTTSCEEECCEEEECSCCSCCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEECS
T ss_pred EcCCCceEEecCCeEEEEEEeEcCCCCCceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEEec
Confidence 34455778999999999999987 788999999987543 12233332
Q ss_pred c--cceEEEccCccCCCeEEEEEEEeCCee-----EEEEEEEEEeeC---CeEEec-CCCcEEeeCCeEEEEEEEecCCC
Q psy574 149 P--SRSLQLSDVRLEDAGEYVCEAENAVGK-----ISASATLTVQMA---PIVRER-PSDLRLEVGRDAVFLCGIEGSPP 217 (977)
Q Consensus 149 ~--~~~L~I~~v~~~D~G~Y~C~a~n~~g~-----~~~~~~L~V~~~---p~~~~~-p~~~~v~~G~~v~L~C~~~g~p~ 217 (977)
. +.+|.|.+++.+|+|.|+|.+.|..+. ....+.|.|..+ |.+... +....+.+|+.++|.|.+.+.|.
T Consensus 86 ~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~v~~g~~v~L~C~~~g~p~ 165 (250)
T 2fbo_J 86 NLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCAN 165 (250)
T ss_dssp CTTSCCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSCCSCCEECCCSEEECCTTCCEEECCCEESCTT
T ss_pred cCCcceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccCCCCeEEEecCceEEecCCCcEEEEEEecCCCC
Confidence 2 358999999999999999999997663 366888998864 344333 44457778999999999999999
Q ss_pred CeEEEEEcCeeeeecCCCc-------------------cccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCce
Q psy574 218 PSTFWMLEGNRSLIYPGDR-------------------VDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSD 277 (977)
Q Consensus 218 ~~i~W~~~g~~~~~~~~~~-------------------~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~ 277 (977)
|.+.|++++..+....... ..+.... +...|.|.+++.+|+|.|+ |.|.|..|..
T Consensus 166 p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~L~i~~v~~~D~G~Y~-C~a~N~~g~~ 239 (250)
T 2fbo_J 166 ANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFS----GARNLVIRAAKITDAGRVW-CELATGQGEL 239 (250)
T ss_dssp CEEEEEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEE----TTTEEEECSCCGGGCEEEE-EEEESSSSGG
T ss_pred CeeEEEeCCCcccccccCcceeEeccCCCCccccCceEecccccC----CccEEEEecCCcccCEEEE-EEecCCcccc
Confidence 9999999987663211100 0111111 2249999999999999999 9999966543
No 277
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}
Probab=99.74 E-value=2.6e-17 Score=163.88 Aligned_cols=157 Identities=16% Similarity=0.154 Sum_probs=116.6
Q ss_pred ccceEEeCCCcEEEEEECCCCCCCCeEEEEeC-CEEee------------cCCCceEEE-ecCcEEEEcCCCCCCCeEEE
Q psy574 12 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKN-GHPID------------FENSKRLRL-VDGTNLAIQDSRKTDDGRYQ 77 (977)
Q Consensus 12 p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~-g~~l~------------~~~~~r~~~-~~~g~L~I~~v~~~D~G~Y~ 77 (977)
...+.+.+|++|+|.|.+....+.+.|.|+|+ +..+. ....+|+.+ ..+++|.|.+++.+|+|.|+
T Consensus 6 ~~~v~v~~G~~vtL~c~~~~~~~~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~~l~~~~~sL~I~~v~~~D~G~Y~ 85 (180)
T 2dru_A 6 VPNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALRIYNVSKEDRGDYY 85 (180)
T ss_dssp CCEEEEETTSCEEECCCSSCCCSCSEEEEESSSSCEEEEECSSSCEEECSSTTTTTEEECTTTCCEEECSCCGGGCEEEE
T ss_pred cceEEEEeCCCEEEeCCCCCCCceeEEEEEecCCeEEEEEECCCCeeEcchhcCCeEEEeCCCccEEEcCCCHHHCeEEE
Confidence 45689999999999998733345789999994 43321 112268888 56789999999999999999
Q ss_pred EEEEecCceeeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEe-cccCceEEEEEECCeeCCCCceEEeccceEEEc
Q psy574 78 CVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSV-GGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLS 156 (977)
Q Consensus 78 C~a~n~~g~~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v-~g~p~~~i~W~k~~~~l~~~~~~~~~~~~L~I~ 156 (977)
|.+.+.. .....+.|.|..++. .......++.++|.|.+ .| |.+.|.|+|++..+. ...+.+|.+.
T Consensus 86 C~v~~~~--~~~~~~~L~V~~~~~-----~P~i~~~~~~v~L~C~~~~g-p~p~i~W~~~~~~l~-----~~~~~~l~~~ 152 (180)
T 2dru_A 86 MRMLHET--EDQWKITMEVYEMVS-----KPMIYWECSNATLTCEVLEG-TDVELKLYQGKEHLR-----SLRQKTMSYQ 152 (180)
T ss_dssp EEEESSS--EEEEEEEEEEECCCC-----CCEEEEEGGGTEEEEECSSC-TTCEEEEEETTEEEE-----EESSSEEEEE
T ss_pred EEEEcCC--eEEEEEEEEEECCCC-----CCEEEecCCCEEEEEEeCCC-CCCEEEEEECCeECc-----CCCCCEEEEE
Confidence 9998765 445677888876421 11122345779999999 66 999999999998875 1245567763
Q ss_pred cCccCCCeEEEEEEEeCCeeEEEEEEE
Q psy574 157 DVRLEDAGEYVCEAENAVGKISASATL 183 (977)
Q Consensus 157 ~v~~~D~G~Y~C~a~n~~g~~~~~~~L 183 (977)
. .+|+|.|+|.|.|..+...+...+
T Consensus 153 ~--~~d~g~Y~C~a~N~~~~~~~~~~i 177 (180)
T 2dru_A 153 W--TNLRAPFKCKAVNRVSQESEMEVV 177 (180)
T ss_dssp C--SCCSSCEEEEEEETTEEEEEEECC
T ss_pred E--hhcCccEEEEEecCcCccccceeE
Confidence 3 789999999999999876655443
No 278
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.74 E-value=2.5e-17 Score=165.65 Aligned_cols=162 Identities=17% Similarity=0.216 Sum_probs=123.0
Q ss_pred cCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCC---ceEEeccceEEEccCccCCCeEEEEEEEeCC
Q psy574 98 VKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED---RMSVLPSRSLQLSDVRLEDAGEYVCEAENAV 174 (977)
Q Consensus 98 ~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~---~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~ 174 (977)
.+|.+...|.. .+.+|++++|.|.+.+. .+.+.|+|++..+... ......+..|.|.+++.+|+|.|+|.+.|..
T Consensus 3 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~~-~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~ 80 (188)
T 1oll_A 3 PKPFIWAEPHF-MVPKEKQVTICCQGNYG-AVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGE 80 (188)
T ss_dssp CCCEEEEESCS-EEETTCCEEEEEECCTT-CCEEEEEETTEEEEEECCSSCTTCCEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred CCCEEEeecCC-cCCCCCCEEEEEecCCC-CCEEEEEECCCcccccccccCCCcceeEEEeCcCCcccCeEEEEEecCCC
Confidence 35777777766 89999999999999754 4689999999876421 1111245789999999999999999999876
Q ss_pred ee--EEEEEEEEEee---CCeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCccccEEEEEccCCc
Q psy574 175 GK--ISASATLTVQM---APIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGM 249 (977)
Q Consensus 175 g~--~~~~~~L~V~~---~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~ 249 (977)
+. .+..+.|.|.. +|.+...| ...+.+|+.++|.|.+.+. .+.+.|+|+|..+.. ... .. ...
T Consensus 81 ~~~~~s~~~~l~V~~~~~~p~i~~~p-~~~v~~G~~v~L~C~~~~~-~~~~~w~k~g~~~~~-------~~~-~~--~~~ 148 (188)
T 1oll_A 81 LWSEPSNLLDLVVTEMYDTPTLSVHP-GPEVISGEKVTFYCRLDTA-TSMFLLLKEGRSSHV-------QRG-YG--KVQ 148 (188)
T ss_dssp EECCCCCCEEEEEESCSCCCEEEEES-CSEEETTCEEEEEEECSSS-CSEEEEEEESSSCEE-------EEE-EC--SSE
T ss_pred CCCCCCCceEEEecccCCCCeEEECC-CCccccCCEEEEEEEcCCC-CCEEEEEECCccccc-------ccc-CC--Cce
Confidence 53 34567788874 56666656 4678999999999998764 568999999976532 011 11 233
Q ss_pred eEEEEeecccCCCCeEEEEEEEcCC
Q psy574 250 NLLKIQNVSRTAAPLIILCLGVNAA 274 (977)
Q Consensus 250 s~L~I~~v~~~d~G~Y~~C~a~n~~ 274 (977)
..|.|.+++.+|+|.|+ |.|.|..
T Consensus 149 ~~L~I~~v~~~d~G~Y~-C~a~n~~ 172 (188)
T 1oll_A 149 AEFPLGPVTTAHRGTYR-CFGSYNN 172 (188)
T ss_dssp EEEEEEECCGGGCEEEE-EECEEET
T ss_pred eEEEECCCCcCCCcEEE-EEEEcCC
Confidence 59999999999999999 9999865
No 279
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Probab=99.74 E-value=3.3e-18 Score=174.35 Aligned_cols=152 Identities=19% Similarity=0.298 Sum_probs=111.7
Q ss_pred EeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecCceeeeEeEEEEE
Q psy574 17 VAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRV 96 (977)
Q Consensus 17 v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V 96 (977)
+.+|++++|.|.+ |.+.|.|+|||..+... ...+++|.|.+++.+|+|.|+|.+.+.. +..+.|.|
T Consensus 15 ~~~G~~v~L~C~~----p~~~i~W~k~g~~l~~~------~~~~~~L~i~~v~~~DsG~Y~C~~~~~~----s~~~~v~v 80 (204)
T 1sy6_A 15 YQEDGSVLLTCDA----EAKNITWFKDGKMIGFL------TEDKKKWNLGSNAKDPRGMYQCKGSQNK----SKPLQVYY 80 (204)
T ss_dssp CCSSSEEEEEECS----CSSEEEEEETTEEEEEE------ESSCCCEEEEEGGGCCEEEEEEESSSSC----CCCEEEEE
T ss_pred ecCCCeEEEEEcC----CCCEEEEEECCEECCCC------CCCCCeEEeCCCCcCCCEEEEEEecCCC----CeeEEEEE
Confidence 3689999999987 78899999999998432 1246789999999999999999975432 23345555
Q ss_pred E---------------------------c----CCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCC--
Q psy574 97 L---------------------------V----KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED-- 143 (977)
Q Consensus 97 ~---------------------------~----~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~-- 143 (977)
. . ++.+...| .....+|++++|.|. |.|.+.|.|+|++..+...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~v~~~G~~v~L~C~--g~p~p~i~W~k~~~~l~~~~~ 157 (204)
T 1sy6_A 81 RMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTP-YKVSISGTTVILTCP--QYPGSEILWQHNDKNIGGDED 157 (204)
T ss_dssp EC------------------------------------CCC-CEEEEETTEEEEECS--CCCSSCEEEEETTEEESCCTT
T ss_pred EEeccccccccccccccccccccccccccccccccceecCC-ceeeecCCcEEEEcC--CCCCCceEEEECCEECCCccC
Confidence 4 0 22222223 223348999999998 7888999999999887542
Q ss_pred -ceEEeccceEEEccC-ccCCCeEEEEEEEeCCee-EEEEEEEEE
Q psy574 144 -RMSVLPSRSLQLSDV-RLEDAGEYVCEAENAVGK-ISASATLTV 185 (977)
Q Consensus 144 -~~~~~~~~~L~I~~v-~~~D~G~Y~C~a~n~~g~-~~~~~~L~V 185 (977)
+.....++.|.|.++ +.+|+|.|+|.|.|..|. .+..+.|.|
T Consensus 158 ~~~~~~~~~~L~I~~v~~~~D~G~Y~C~A~N~~g~~~s~~l~l~~ 202 (204)
T 1sy6_A 158 DKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLRA 202 (204)
T ss_dssp CTTEEEETTEEEETTCCHHHHCEEEEEEETTSCGGGSSCEEEEEE
T ss_pred CceEecCCCEEEEeeCCccccCEEEEEEeccCCCCceeEEEEEEE
Confidence 222235789999999 999999999999999886 345555554
No 280
>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1
Probab=99.74 E-value=2.9e-17 Score=176.83 Aligned_cols=177 Identities=19% Similarity=0.329 Sum_probs=130.5
Q ss_pred ceecccceEEeCCCcEEEEEECCCCCC--CCeEEEEeCC--EEee---------------cCCCceEEEec-----CcEE
Q psy574 8 FRVQPKSQRVAAGDTALLECGPPRGHP--EPTLVWKKNG--HPID---------------FENSKRLRLVD-----GTNL 63 (977)
Q Consensus 8 ~~~~p~~~~v~~G~~v~L~C~~~~g~P--~~~v~W~k~g--~~l~---------------~~~~~r~~~~~-----~g~L 63 (977)
+..+|..+.+.+|++|+|.|.+ .+.| .+.|.|+|++ ..+. .....|+.+.. +++|
T Consensus 29 ~~~~p~~~~v~~G~~v~L~C~~-~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL 107 (282)
T 1qok_A 29 KLQQSGAELVRSGTSVKLSCTA-SGFNIKDSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDTSSNTAYL 107 (282)
T ss_dssp EEEECCCEEEETTCCEEEEEEE-ESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEE
T ss_pred EEECCCCEEEeCCCeEEEEEec-cCCCCCCceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEecCCCeEEE
Confidence 4567889999999999999998 5664 6899999953 2110 11235776653 2579
Q ss_pred EEcCCCCCCCeEEEEEEEecCce----eeeEeEEEEEEcC---------------CeEEeCCCceEEeCCCeEEEEEEec
Q psy574 64 AIQDSRKTDDGRYQCVVKNVAGT----RESTDAVLRVLVK---------------PYIIRGPKDTTVSASSIIVFECSVG 124 (977)
Q Consensus 64 ~I~~v~~~D~G~Y~C~a~n~~g~----~~s~~~~l~V~~~---------------P~~~~~p~~~~v~~G~~v~l~C~v~ 124 (977)
.|.+++.+|+|.|+|.+.|..|. .....+.|.|..+ +.+...|....+.+|++++|.|.+.
T Consensus 108 ~I~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~ 187 (282)
T 1qok_A 108 QLSSLTSEDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSENVLTQSPAIMSASPGEKVTITCSAS 187 (282)
T ss_dssp EECSCCGGGCEEEEEEEECSSSSCCCEEECCCEEEEEEC---------------CCCEEEECSEEEECTTCCEEEEEEES
T ss_pred EECcCChhhCEEEEEEeccCCCccceeeeCCCEEEEEecCCcccCCccCCCCccceEEecCCCEEEEcCCCcEEEEEEec
Confidence 99999999999999999988651 1223457888764 3456667788899999999999999
Q ss_pred ccCceEEEEEE--CCeeCC-------------CCceEEe---ccceEEEccCccCCCeEEEEEEEeCCee-EEEEEEEEE
Q psy574 125 GDAVLTVHWKR--LGSAMP-------------EDRMSVL---PSRSLQLSDVRLEDAGEYVCEAENAVGK-ISASATLTV 185 (977)
Q Consensus 125 g~p~~~i~W~k--~~~~l~-------------~~~~~~~---~~~~L~I~~v~~~D~G~Y~C~a~n~~g~-~~~~~~L~V 185 (977)
+.+ +.+.|+| ++..+. ..++... ...+|.|.+++.+|+|.|+|.|.|.... ......|.|
T Consensus 188 ~~~-~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V 266 (282)
T 1qok_A 188 SSV-SYMHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISRMEAEDAATYYCQQRSSYPLTFGAGTKLEL 266 (282)
T ss_dssp SCC-SCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEE
T ss_pred CCC-ceEEEEEECCCCCcEEEEEEecCCCCcccCCeEEecCCCEEEEEEccCChhHCEEEEEEEeeCCCceEeCCEEEEE
Confidence 888 8999999 554431 2455443 2347999999999999999999875432 334566776
Q ss_pred e
Q psy574 186 Q 186 (977)
Q Consensus 186 ~ 186 (977)
.
T Consensus 267 ~ 267 (282)
T 1qok_A 267 K 267 (282)
T ss_dssp C
T ss_pred e
Confidence 5
No 281
>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A
Probab=99.74 E-value=3e-17 Score=172.99 Aligned_cols=166 Identities=16% Similarity=0.239 Sum_probs=121.4
Q ss_pred cceecccceEEeCCCcEEEEEECCCCCC-----CCeEEEEeCC--EE---ee-------cCCCceEEEecC---cEEEEc
Q psy574 7 EFRVQPKSQRVAAGDTALLECGPPRGHP-----EPTLVWKKNG--HP---ID-------FENSKRLRLVDG---TNLAIQ 66 (977)
Q Consensus 7 ~~~~~p~~~~v~~G~~v~L~C~~~~g~P-----~~~v~W~k~g--~~---l~-------~~~~~r~~~~~~---g~L~I~ 66 (977)
.+...|.++.+.+|++|+|.|.+ .+.| .+.|.|+|++ .. +. .....|+.+..+ .+|.|.
T Consensus 3 ~v~~~p~~~~v~~G~~v~L~C~~-~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~ 81 (247)
T 1svz_A 3 LMTQTPLYLPVSLGDQASISCRS-SQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKIS 81 (247)
T ss_dssp CEEEECSEEEECTTCCEEEEEEE-SSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEES
T ss_pred cEEecCCeEEecCCCCEEEEEeC-CCcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEeccCCCEEEEEEC
Confidence 46678889999999999999999 6666 6899999842 21 11 112456666532 379999
Q ss_pred CCCCCCCeEEEEEEEecCceeeeEeEEEEEEcCC-------------eEEeCCCceEEeCCCeEEEEEEecccC--ceEE
Q psy574 67 DSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKP-------------YIIRGPKDTTVSASSIIVFECSVGGDA--VLTV 131 (977)
Q Consensus 67 ~v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V~~~P-------------~~~~~p~~~~v~~G~~v~l~C~v~g~p--~~~i 131 (977)
+++.+|+|.|+|.+.|..+...+..+.|.|..++ .++..+....+.+|++++|.|.+.+.+ .+.+
T Consensus 82 ~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v 161 (247)
T 1svz_A 82 RVEAEDLGIYYCFQGSHFPPTFGGGTKLEIKGGGGSGGGGSGGGGSEVQLQQSGPELKKPGETVKISCKATNYAFTDYSM 161 (247)
T ss_dssp SCCGGGCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCE
T ss_pred CCCHHHCEEEEEEEccCCccEECCCEEEEEECCccccccccccccCceEEeCCCceeecCCCcEEEEEEEcCcccCCcEE
Confidence 9999999999999998765433445678887642 234444455799999999999998764 5689
Q ss_pred EEEECC--eeC------------------CCCceEEec-----cceEEEccCccCCCeEEEEEEEeC
Q psy574 132 HWKRLG--SAM------------------PEDRMSVLP-----SRSLQLSDVRLEDAGEYVCEAENA 173 (977)
Q Consensus 132 ~W~k~~--~~l------------------~~~~~~~~~-----~~~L~I~~v~~~D~G~Y~C~a~n~ 173 (977)
.|+|++ ..+ ..+++.+.. ..+|.|.+++.+|+|.|+|.|.|.
T Consensus 162 ~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~ 228 (247)
T 1svz_A 162 HWVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLKNEDTATYFCVRDRH 228 (247)
T ss_dssp EEEEECTTCCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEEG
T ss_pred EEEEeCCCCCcEEEEEEEcCCCccccCccccCcEEEEEecCCCEEEEEECCCChhHCEEEEEEEecc
Confidence 999963 111 134555532 248999999999999999999985
No 282
>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding homology region (CHR), cell MEMB disease mutation, glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo sapiens}
Probab=99.74 E-value=3.5e-17 Score=185.49 Aligned_cols=326 Identities=14% Similarity=0.090 Sum_probs=208.8
Q ss_pred CCCCCCCCCeEEeeCC-CceEEEEEcCCCC-CCcccceEEEEEeecCCCCCCCCCCCCcccEEEec-eec--CcCeEE--
Q psy574 396 TYPGPPTKPTLVNQTA-NGLTLAWSRNNQI-GSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVA-TNV--PSPILT-- 468 (977)
Q Consensus 396 ~~p~~P~~~~v~~~~~-~sv~lsW~~p~~~-~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~-~~~--~~~~~~-- 468 (977)
..|.+|..+.+..... .++.|+|...... .......|.|+..+.... +..|.... ..+ ....+.
T Consensus 83 ~~p~~p~~l~~~~~~~~~~l~~~w~~~~~~~~~~~~~~~~i~i~r~~~~---------~~v~~~~~~~~~~~~~~~~~w~ 153 (483)
T 3e0g_A 83 LIPDTPEILQLSADFSTSTLYLKWNDRGSVFPHRSNVIWEIKVLRKESM---------ELVKLVTHQTTLNGKDTLHHWS 153 (483)
T ss_dssp ECCCCCCBCCCEEETTTTEEEEEEEECGGGCCSCCEEEEEEEEESSSSC---------EEEEEEEEEECGGGCCEEEEEE
T ss_pred eccCCCceEEEEecCCCcEEEEEEeCCCCCCCcccceEEEEEEEEcCCc---------cEEEEEEEEEEecCCCceEEEE
Confidence 5688888888776665 7899999987552 223457799988765433 12443322 222 222222
Q ss_pred -EEcc-CCCCeEEEEEEEE-c---CCCCCCCCCCCceEEeecccc---ccccccCC---------------c--------
Q psy574 469 -VTNL-TVGLTYTFLVRAL-N---SHGLSAPSPLSDEIVLRGTFS---EGIFSEGG---------------K-------- 516 (977)
Q Consensus 469 -i~~L-~p~t~Y~~~V~a~-n---~~G~s~~S~~s~~~~~~~~~p---~~~p~~~~---------------~-------- 516 (977)
-++| .+.+.|.++||+. | -.|.+.+|.++......+... -..|..+. +
T Consensus 154 w~s~~plec~~h~v~iR~~~~~~~~~~~~~ws~Ws~~~~~~~~~~~~~~ifP~~~vv~~GS~vt~~Ci~~~~~~~~~l~~ 233 (483)
T 3e0g_A 154 WASDMPLECAIHFVEIRCYIDNLHFSGLEEWSDWSPVKQISWIPDSQTKVFPQDKVILVGSDITFCCVSQEKVLSALIGH 233 (483)
T ss_dssp EECSSCTTSSCEEEEEEEEEECTTCCSEECCCCCCCCEEECCCCCSSCCEESCSEEEETTCCEEEEECCSSCEEEEESSS
T ss_pred ecCCCCCCCCccEEEEEEEecccccCCCCCCcCCCChhhccccCCCCcEEeccCCEEeCCCCEEEEEEeCccccceecCc
Confidence 2233 4688999999998 3 356555666664444422111 11122100 0
Q ss_pred ----ceeec----------CCCCCCCcchHH------HHhhcc-cccCCceEEEEEeeEeCCCeEEEEEEec-CCC----
Q psy574 517 ----GIFSE----------NFPDEGRGESLR------RARQHL-QEGGGSLIELTEVKPMTSTSVKLTWEIL-NTD---- 570 (977)
Q Consensus 517 ----~~~~~----------~P~~~~~g~~~~------~~~~~l-~~~~~~~~~~l~~~~~~~tsv~lsW~~p-~~~---- 570 (977)
.+.+. -+.....|.... .....+ .+.++.+|+++.+...+.++++++|+++ ..+
T Consensus 234 ~~~~~~~l~~~~~~i~v~nl~~~~~sg~n~~C~~~~~~~g~~l~vg~PP~~P~nlsC~s~~~~sltCsW~pg~dt~l~G~ 313 (483)
T 3e0g_A 234 TNCPLIHLDGENVAIKIRNISVSASSGTNVVFTTEDNIFGTVIFAGYPPDTPQQLNCETHDLKEIICSWNPGRVTALVGP 313 (483)
T ss_dssp CCBCCEECSSSCEEEEECSCCCCCSSCEEEEEEESSCEEEEEEEEECCCCCCEEEEEEBSSTTEEEEEEECCSCCSCCGG
T ss_pred ccceeEEecCCEEEEEEeCCCCccCccceEEEecCCcccceEEECcCCCCCCCccEEEecCCCEEEEEECCCCcCCcCCC
Confidence 00000 000000111000 000111 1145556899999999999999999998 222
Q ss_pred ccceEEEEEEecCCCCCceEEEEee--cCccceEEECCCCCCcEEEEEEEEeecceeCCCCCceEEeccCCCCCCCCcee
Q psy574 571 YIEGVYIYSRGLDPPASVAMLTVLH--AGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVRTLECEPSGVPQLT 648 (977)
Q Consensus 571 ~i~~Y~v~y~~~~~~~~~~~~~~~~--~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~g~~s~~~~~~T~~~~P~~~P~~v 648 (977)
..+.|.|+|+..+. ........ .+....+.|.+|.+++.|.|+|.|.|..|.+. +. ..+...+.+++.||.++
T Consensus 314 ~~t~YtL~y~~~g~---~~~C~~~~~~~~~~~~C~~~~l~~~t~Y~f~V~A~N~lG~~~-S~-~~~~~~~~VkP~PP~nl 388 (483)
T 3e0g_A 314 RATSYTLVESFSGK---YVRLKRAEAPTNESYQLLFQMLPNQEIYNFTLNAHNPLGRSQ-ST-ILVNITEKVYPHTPTSF 388 (483)
T ss_dssp GCCEEEEEETTTCC---EEEECCCSSCSCSCEEEEEECCTTCCCEEEEEEEECSSCEEE-EE-EEECGGGGBCCCCCEEE
T ss_pred CCeeEEEEEEECCC---CccccCCcccCCCEEEEEEccCCCCcEEEEEEEEEeCCCCcc-cc-eEEEeccccCCCCCeee
Confidence 27899999986532 11111110 12456789999999999999999999998875 33 56666666666799999
Q ss_pred EEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCc-ceEEEEecC---CcCeEEecCCCCCceEEEEEEEEcCCCc
Q psy574 649 DPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNS-ALINMTVSA---STPTLLLTNLSAGIRYSVSLAATNRAGT 724 (977)
Q Consensus 649 ~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~-~~~~~~~~~---~~~~~~l~~L~p~t~Y~~~V~A~~~~G~ 724 (977)
++...+++++.|+|++| ...++.+..|+|+|+..+.. .+....+.+ ...++.|.+|+|++.|.|+|||. ..|.
T Consensus 389 ~v~~~~stsl~LsW~~P--~~~~~~~L~YeVrYr~~~~~~~~~~vsv~~~~~~~~s~~l~~L~PgT~Y~vrVRA~-~~g~ 465 (483)
T 3e0g_A 389 KVKDINSTAVKLSWHLP--GNFAKINFLCEIEIKKSNSVQEQRNVTIQGVENSSYLVALDKLNPYTLYTFRIRCS-TETF 465 (483)
T ss_dssp EECCSSSSSCCEEEECC--SCCTTSBCCCEEEEECSSSCCCEEECCCBCCSSSBCCCCCCSCCSSSSCEEEEECC-CSSC
T ss_pred EEEEecCCeEEEEECCC--CCCCCceEEEEEEEEECCCCCceEEEEEeccCCceeEEEEeccCCCcEEEEEEEEe-eCCC
Confidence 99877889999999999 55677889999999986633 233333332 23467899999999999999999 6776
Q ss_pred ---CCCCCceEEeecCC
Q psy574 725 ---GPYSRPALLSLTSG 738 (977)
Q Consensus 725 ---g~~S~~~~~~t~~~ 738 (977)
|+||+++.|+|.++
T Consensus 466 g~WSeWS~~~~f~T~E~ 482 (483)
T 3e0g_A 466 WKWSKWSNKKQHLTTEA 482 (483)
T ss_dssp CCCCCCCCCCCCCCCCC
T ss_pred CCcCCCCCceeeECCCC
Confidence 78999999988654
No 283
>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}
Probab=99.74 E-value=1.6e-17 Score=176.26 Aligned_cols=180 Identities=18% Similarity=0.260 Sum_probs=130.4
Q ss_pred cccceecccceEEeCCCcEEEEEECCCC--CCCCeEEEEeCC--E---Ee------------ecCCCceEEEecC-----
Q psy574 5 REEFRVQPKSQRVAAGDTALLECGPPRG--HPEPTLVWKKNG--H---PI------------DFENSKRLRLVDG----- 60 (977)
Q Consensus 5 ~~~~~~~p~~~~v~~G~~v~L~C~~~~g--~P~~~v~W~k~g--~---~l------------~~~~~~r~~~~~~----- 60 (977)
.+.|...|..+.+.+|++|+|.|.+ .+ .|.+.|.|+|.. . .+ .....+|+.+..+
T Consensus 6 ~~~~~~~~~~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~ 84 (256)
T 3juy_B 6 HQVQLVQSGAEVKKPGASVKVSCQA-SGYRFSHFTVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANT 84 (256)
T ss_dssp -CCEEEECCCEEECTTCCEEEEEEE-ESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTE
T ss_pred ceEEEEecCCceecCCCeEEEEEEe-ecccccCceEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEecCCCE
Confidence 4677888999999999999999998 44 367899999732 1 11 1122357777632
Q ss_pred cEEEEcCCCCCCCeEEEEEEEec-----------CceeeeEeEEEEEEc---------------CCeEEeCCCceEEeCC
Q psy574 61 TNLAIQDSRKTDDGRYQCVVKNV-----------AGTRESTDAVLRVLV---------------KPYIIRGPKDTTVSAS 114 (977)
Q Consensus 61 g~L~I~~v~~~D~G~Y~C~a~n~-----------~g~~~s~~~~l~V~~---------------~P~~~~~p~~~~v~~G 114 (977)
.+|.|.+++.+|+|.|.|.+.+. ........+.|.|.. +|.+...|....+.+|
T Consensus 85 ~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G 164 (256)
T 3juy_B 85 AYMELRSLRSADTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSGGGGSGGGGSGGGGSEIVLTQAPGTLSLSPG 164 (256)
T ss_dssp EEEEECSCCGGGCEEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSCC----------CCCCCCEEEECSEEEECTT
T ss_pred EEEEECCCCcccCEEEEEeEEeccccccccccccceeEECCceEEeecCCcccccccccCCCcceeEEEecCCeEEEeCC
Confidence 25999999999999999999986 122233456788876 4567778888999999
Q ss_pred CeEEEEEEecccCc-eEEEEEEC--CeeC-------------CCCceEEec---cceEEEccCccCCCeEEEEEEEeCCe
Q psy574 115 SIIVFECSVGGDAV-LTVHWKRL--GSAM-------------PEDRMSVLP---SRSLQLSDVRLEDAGEYVCEAENAVG 175 (977)
Q Consensus 115 ~~v~l~C~v~g~p~-~~i~W~k~--~~~l-------------~~~~~~~~~---~~~L~I~~v~~~D~G~Y~C~a~n~~g 175 (977)
++++|.|.+.+.+. +.+.|+|. +..+ ..+++.+.. ..+|.|.+++.+|+|.|+|.|.|...
T Consensus 165 ~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~ 244 (256)
T 3juy_B 165 ERATFSCRSSHSIRSRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSGSGTDFTLTITRVEPEDFALYYCQVYGASS 244 (256)
T ss_dssp SCEEEEEEESSCCTTCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECCSSC
T ss_pred CCEEEEEEECCCcCCeeEEEEEECCCCCcEEEEEecCccCCccCCcEEEEccCCEEEEEECCCCHhHCEEEEEEEeeCCC
Confidence 99999999988776 89999984 2221 124444432 24699999999999999999998543
Q ss_pred e-EEEEEEEEE
Q psy574 176 K-ISASATLTV 185 (977)
Q Consensus 176 ~-~~~~~~L~V 185 (977)
. ......|.|
T Consensus 245 ~~~g~gt~l~V 255 (256)
T 3juy_B 245 YTFGQGTKLER 255 (256)
T ss_dssp CEECCCEEEEE
T ss_pred ceEcCCEEEEE
Confidence 2 223344544
No 284
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A
Probab=99.74 E-value=7.1e-17 Score=167.60 Aligned_cols=174 Identities=14% Similarity=0.169 Sum_probs=121.6
Q ss_pred CCceEEeCCCeEEEEEEecccCce---EEEEEECCeeCC------------------CCceEEe------ccceEEEccC
Q psy574 106 PKDTTVSASSIIVFECSVGGDAVL---TVHWKRLGSAMP------------------EDRMSVL------PSRSLQLSDV 158 (977)
Q Consensus 106 p~~~~v~~G~~v~l~C~v~g~p~~---~i~W~k~~~~l~------------------~~~~~~~------~~~~L~I~~v 158 (977)
+..+.+.+|++++|.|.+.+.+.+ .|.|+|++.... ..|.... .+.+|.|.++
T Consensus 11 ~~pV~v~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v 90 (226)
T 4f80_A 11 SGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNV 90 (226)
T ss_dssp SSCEEEETTSCEEEEEEEESCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEECTTGGGTEEEEEESSC
T ss_pred CCCEEEEcCCcEEEEEEEECCCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEEecccccCCeEEEEEeeC
Confidence 345788999999999999765543 799999764211 1233332 2357999999
Q ss_pred ccCCCeEEEEEEEeCCeeEEEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEEec-CCCCeEEEEEcCeeeeecCCCcc
Q psy574 159 RLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEG-SPPPSTFWMLEGNRSLIYPGDRV 237 (977)
Q Consensus 159 ~~~D~G~Y~C~a~n~~g~~~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g-~p~~~i~W~~~g~~~~~~~~~~~ 237 (977)
+.+|+|.|+|.|.|..+.....+.+.+. +.+...+....+.+|+.+.|.|.+.+ .|.|.|.|++++..+.. .
T Consensus 91 ~~~D~G~Y~C~a~n~~~~~~~~v~~~~~--~~~~~~~~~~~~~~g~~v~l~c~~~g~~P~p~i~W~k~~~~~~~-----~ 163 (226)
T 4f80_A 91 TASDSGKYLCYFQDGDFYEKALVELKVA--ALGSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIP-----T 163 (226)
T ss_dssp CGGGCEEEEEEEEETTEEEEEEEEEEEE--BCCCCCEEEEEEEETTEEEEEEEEEEEBSCCEEEEECTTSCBCC-----C
T ss_pred chHHCeeEEEEEECCCcEEEEEEEEeec--cceecccceeeeccCCceeeEEEeccCCCCCEEEEEECCceEcC-----C
Confidence 9999999999999998877665555544 33333344567889999999999988 59999999997654431 1
Q ss_pred ccEEEEEccCCc-eEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEEC
Q psy574 238 DNIQAEITSDGM-NLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSG 287 (977)
Q Consensus 238 ~~~~~~~~~~g~-s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~ 287 (977)
.........+|. ..+.+..++.+|+|.|+ |.|.|..|.....+.|.|.+
T Consensus 164 ~~~~~~~~~~g~~~v~s~l~v~~~d~G~Yt-C~a~N~~g~~~~~~~v~v~e 213 (226)
T 4f80_A 164 VEAPVVADGVGLYAVAASVIMRGSSGEGVS-CTIRSSLLGLEKTASISIAD 213 (226)
T ss_dssp EECCCEECTTSCEEEEEEEEECC----CEE-EEEEETTTTEEEEEEECCCT
T ss_pred CceEEEECCCCcEEEEEEEEechhcCcEEE-EEEEeCCCCeEEEEEEEECC
Confidence 111122222343 34455678889999999 99999999999998888865
No 285
>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}
Probab=99.74 E-value=2.4e-17 Score=174.84 Aligned_cols=179 Identities=16% Similarity=0.258 Sum_probs=130.4
Q ss_pred ccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCC--E---Eee--------cCCCceEEEe-----cCcEEEEcC
Q psy574 6 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNG--H---PID--------FENSKRLRLV-----DGTNLAIQD 67 (977)
Q Consensus 6 ~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g--~---~l~--------~~~~~r~~~~-----~~g~L~I~~ 67 (977)
..+...|..+.+.+|++|+|.|.+ .+.|.+.|.|+|.. . .+. .....|+.+. .+.+|.|.+
T Consensus 4 ~~v~q~p~~~~v~~G~~v~L~C~~-~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~ 82 (256)
T 3tf7_C 4 QSVTQPDARVTVSEGASLQLRCKY-SYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKAS 82 (256)
T ss_dssp CEEECSCSEEEEETTSCEEECCEE-ECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETTTTEEEEEESS
T ss_pred cEEEecCceEEecCCCeEEEEEEe-CCCCCceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCCCCEEEEEECC
Confidence 456778889999999999999999 67799999999832 1 111 0123455552 134699999
Q ss_pred CCCCCCeEEEEEEEecCce---eeeEeEEEEEEc--------------------CCeEEeCCCceEEeCCCeEEEEEEec
Q psy574 68 SRKTDDGRYQCVVKNVAGT---RESTDAVLRVLV--------------------KPYIIRGPKDTTVSASSIIVFECSVG 124 (977)
Q Consensus 68 v~~~D~G~Y~C~a~n~~g~---~~s~~~~l~V~~--------------------~P~~~~~p~~~~v~~G~~v~l~C~v~ 124 (977)
++.+|+|.|+|.+.|..+. .....+.|.|.. +|.+...|....+.+|++++|.|.+.
T Consensus 83 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~ 162 (256)
T 3tf7_C 83 VHRSDSAVYFCAVSAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSEAAVTQSPRNKVTVTGENVTLSCRQT 162 (256)
T ss_dssp CCGGGCSEEEEEEECTTCTTCEEECCCEEEEEEC---------------------CCEEESCSEEEEETTCCEEECEEEC
T ss_pred CCcccCEEEEEEEecCCCccceEECCCeEEEEeCCCCCcCCCCcCcccCCCCcCccEEEecCCEEEEeCCCcEEEEEEcC
Confidence 9999999999999987541 123345777775 56788889888999999999999998
Q ss_pred ccCceEEEEEECCe--eC----------------CCCceEEe----ccceEEEccCccCCCeEEEEEEEeCCeeEE--EE
Q psy574 125 GDAVLTVHWKRLGS--AM----------------PEDRMSVL----PSRSLQLSDVRLEDAGEYVCEAENAVGKIS--AS 180 (977)
Q Consensus 125 g~p~~~i~W~k~~~--~l----------------~~~~~~~~----~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~--~~ 180 (977)
+. .+.+.|+|... .+ ..+++... ...+|.|.+++.+|+|.|+|.|.|..|... ..
T Consensus 163 ~~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~fG~g 241 (256)
T 3tf7_C 163 NS-HNYMYWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKATRTTQEDFFLTLESASPSQTSLYFCASSDAPGQLYFGEG 241 (256)
T ss_dssp SC-CSEEEEEEECTTSCEEEEEEEESTTCCEECSCCTTCEEECCSSSBCEEEESSCCGGGCEEEEEEEEEETTEEEECCC
T ss_pred CC-ceEEEEEEECCCCCeEEEEEEcCCCceecCccCCceEEEeCCCCeEEEEECCCCHHHCEEEEEEecCCCCccEECCC
Confidence 76 67899999431 10 01233332 234799999999999999999999876532 23
Q ss_pred EEEEEe
Q psy574 181 ATLTVQ 186 (977)
Q Consensus 181 ~~L~V~ 186 (977)
.+|.|.
T Consensus 242 t~l~v~ 247 (256)
T 3tf7_C 242 SKLTVL 247 (256)
T ss_dssp EEEEEE
T ss_pred eEEEEE
Confidence 455555
No 286
>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...
Probab=99.74 E-value=2.3e-17 Score=169.49 Aligned_cols=175 Identities=17% Similarity=0.266 Sum_probs=128.2
Q ss_pred EEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCe--eC-------------CCCceEEec---cceEEEccCccCCC
Q psy574 102 IIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGS--AM-------------PEDRMSVLP---SRSLQLSDVRLEDA 163 (977)
Q Consensus 102 ~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~--~l-------------~~~~~~~~~---~~~L~I~~v~~~D~ 163 (977)
+...|..+.+.+|+++.|.|.+.+.|.+.|.|+|++. .+ ..+++.+.. ..+|.|.+++.+|+
T Consensus 4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~ 83 (213)
T 3d9a_L 4 LTQSPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDF 83 (213)
T ss_dssp EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred EEeCCccEEEeCCCcEEEEEECCCCCCCCEEEEEeCCCCCcEEEEEEcccccccccccEEEEcCCCEEEEEECCCChhhC
Confidence 4455778889999999999999999888999998642 11 124555542 34899999999999
Q ss_pred eEEEEEEEeCCeeE-EEEEEEEEee---CCeEEecCCCcEEeeCCeEEEEEEEec-CCCC-eEEEEEcCeeeeec-C---
Q psy574 164 GEYVCEAENAVGKI-SASATLTVQM---APIVRERPSDLRLEVGRDAVFLCGIEG-SPPP-STFWMLEGNRSLIY-P--- 233 (977)
Q Consensus 164 G~Y~C~a~n~~g~~-~~~~~L~V~~---~p~~~~~p~~~~v~~G~~v~L~C~~~g-~p~~-~i~W~~~g~~~~~~-~--- 233 (977)
|.|+|.|.|..+.. ...+.|.|.. +|.+...+....+..|+.++|.|.+.+ .|.+ .+.|+++|..+... .
T Consensus 84 G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~ 163 (213)
T 3d9a_L 84 GMYFCQQSNSWPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSW 163 (213)
T ss_dssp EEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEEE
T ss_pred EEEEEeeecCCcceeCCCEEEEEecCCCCceeEeECCChhhcCCCcEEEEEEEeeecCCceEEEEEcCCCcCcceeeecC
Confidence 99999999987653 3345777774 777777555555558999999999987 5655 89999999876421 0
Q ss_pred ---CCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEE
Q psy574 234 ---GDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASL 283 (977)
Q Consensus 234 ---~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l 283 (977)
....+.+.. .+.|.|.++..+|.|.|+ |.|.|..........+
T Consensus 164 ~~~~~~~~~~~~------~s~L~i~~~~~~d~G~Y~-C~a~n~~~~~~~~~~i 209 (213)
T 3d9a_L 164 TDQDSKDSTYSM------SSTLTLTKDEYERHNSYT-CEATHKTSTSPIVKSF 209 (213)
T ss_dssp CCCCTTTCCEEE------EEEEEEEHHHHHHCCEEE-EEEECTTCSSCEEEEE
T ss_pred CCccCCCCCEEE------EEEEEEeccccCCCCEEE-EEEEEccCCCceEEEe
Confidence 001112221 138999999999999999 9999987765444333
No 287
>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H
Probab=99.74 E-value=8.8e-18 Score=173.51 Aligned_cols=172 Identities=16% Similarity=0.241 Sum_probs=121.9
Q ss_pred ecccceEEeCCCcEEEEEECCCCCC--CCeEEEEeC--CEEee---------------cCCCceEEEec-----CcEEEE
Q psy574 10 VQPKSQRVAAGDTALLECGPPRGHP--EPTLVWKKN--GHPID---------------FENSKRLRLVD-----GTNLAI 65 (977)
Q Consensus 10 ~~p~~~~v~~G~~v~L~C~~~~g~P--~~~v~W~k~--g~~l~---------------~~~~~r~~~~~-----~g~L~I 65 (977)
.+|..+.+.+|++++|.|.+ .+.| .+.|.|+|+ |..+. ....+|+.+.. +++|.|
T Consensus 5 ~~p~~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I 83 (219)
T 1c1e_H 5 VQSGPELKKPGETVKISCKA-SGYMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETSATTAYLQI 83 (219)
T ss_dssp EECCCEEECTTCCEEEEEEE-ESSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGGGTEEEEEE
T ss_pred eCCCCeEecCCCcEEEEEEE-eCcccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEecCCCEEEEEE
Confidence 46778999999999999998 5554 689999996 43321 11245777653 358999
Q ss_pred cCCCCCCCeEEEEEEEecCce---eeeEeEEEEEEcC----CeEEeCCCceEEeCCCeEEEEEEecc-cCce-EEEEEEC
Q psy574 66 QDSRKTDDGRYQCVVKNVAGT---RESTDAVLRVLVK----PYIIRGPKDTTVSASSIIVFECSVGG-DAVL-TVHWKRL 136 (977)
Q Consensus 66 ~~v~~~D~G~Y~C~a~n~~g~---~~s~~~~l~V~~~----P~~~~~p~~~~v~~G~~v~l~C~v~g-~p~~-~i~W~k~ 136 (977)
.+++.+|+|.|+|.+.+..+. .....+.|.|... |.+...+....+.+|+.++|.|.+.| .|.+ .|.|+|+
T Consensus 84 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~ 163 (219)
T 1c1e_H 84 NNLKNEDMATYFCARGTTIVRAMDYWGQGTSLTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSG 163 (219)
T ss_dssp CSCCGGGCEEEEEEEEETTTTEEEEECCCEEEEECCCCCBCCEEEEECCCSSSCCSSEEEEEEEEEEEBSSCCEEEEGGG
T ss_pred CCCCcccCEEEEEEEeccCcccceeecCceEEEEecCCCCCCeEEEecCccccccCCeEEEEEEcccccCCCeEEEEEeC
Confidence 999999999999999987631 2224567888753 55554443445678999999999988 8988 9999999
Q ss_pred CeeCCC---CceE----EeccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEE
Q psy574 137 GSAMPE---DRMS----VLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATL 183 (977)
Q Consensus 137 ~~~l~~---~~~~----~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L 183 (977)
+..+.. .... ....+.|.|.... .|.|.|+|.|.|..+.......|
T Consensus 164 g~~~~~~~~~~~~~~~~~~~~s~L~i~~~~-~d~g~Y~C~a~n~~~~~~~~~~i 216 (219)
T 1c1e_H 164 SLSSGVHTFPAVLQSDLYTLSSSVTVPSSP-RPSETVTCNVAHPASSTKVDKKI 216 (219)
T ss_dssp TBCTTEEECCCEESSSCEEEEEEEEEESSS-TTTSCCEEEEEEGGGTEEEEEEC
T ss_pred CcccceEecCCcccCCeEEEEEEEEEeccc-CCCCEEEEEEEeCCCCccEEEec
Confidence 876531 1100 0112468884444 46699999999988765444443
No 288
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*
Probab=99.73 E-value=1.2e-17 Score=171.99 Aligned_cols=176 Identities=15% Similarity=0.177 Sum_probs=131.1
Q ss_pred cCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceEE---eccc--eEEEccCccCCCeEEEEEEEe
Q psy574 98 VKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSV---LPSR--SLQLSDVRLEDAGEYVCEAEN 172 (977)
Q Consensus 98 ~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~---~~~~--~L~I~~v~~~D~G~Y~C~a~n 172 (977)
.+|.+...|. ..+.+|++++|.|.+.+ +.+.|.|+|++..+....... .... .|.|.+++.+|+|.|+|.|.|
T Consensus 8 ~~P~i~~~p~-~~v~~G~~vtL~C~~~~-~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n 85 (218)
T 1uct_A 8 PMPFISAKSS-PVIPLDGSVKIQCQAIR-EAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYRI 85 (218)
T ss_dssp CCCCEEESSC-SEEETTCCEEEEECCCT-TCSEEEEEEEETTEEEECSEECC----CCCEEEECSCCGGGCEEEEEEEEE
T ss_pred CCCEEEecCC-CccCCCCCEEEEEEcCC-CCCEEEEEECCCcccccccccCCCCcceeeEEEEcccccccCEEEEEEEEc
Confidence 4678887776 58899999999999976 678999999987664221111 1345 899999999999999999999
Q ss_pred CCee--EEEEEEEEEee---CCeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCccccEEEEEccC
Q psy574 173 AVGK--ISASATLTVQM---APIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSD 247 (977)
Q Consensus 173 ~~g~--~~~~~~L~V~~---~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~ 247 (977)
..+. .+..+.|.|.. +|.+...| ...+.+|++++|.|.+.+.+.+.+.|+|+|..+.. .. . .. .
T Consensus 86 ~~~~~~~s~~~~l~V~~~~~~P~i~~~p-~~~v~~G~~v~L~C~~~~~~~~~~~W~k~g~~~~~------~~-~-~~--~ 154 (218)
T 1uct_A 86 GHYRFRYSDTLELVVTGLYGKPFLSADR-GLVLMPGENISLTCSSAHIPFDRFSLAKEGELSLP------QH-Q-SG--E 154 (218)
T ss_dssp TTTEEEECCCEEEEEECSSCCCEEEESS-CSEECTTCCCEEEEECSSSCCSEEEEEETTCSSCC------SE-E-EC--S
T ss_pred CCCceeecCCEEEEEcCcccCCEEEeCC-CCccCCCCCEEEEEeCCCCCCCEEEEEECCCcccc------cc-c-CC--C
Confidence 7653 34557788874 55666555 56889999999999777778889999999976531 11 1 11 1
Q ss_pred CceEEEEeecccCCCCeEEEEEEEcCCC-----ceeEEEEEEEEC
Q psy574 248 GMNLLKIQNVSRTAAPLIILCLGVNAAG-----SDLARASLTVSG 287 (977)
Q Consensus 248 g~s~L~I~~v~~~d~G~Y~~C~a~n~~g-----~~~~~~~l~V~~ 287 (977)
....|.|.+++.+|+|.|+ |.|.|... ..+..+.|.|.+
T Consensus 155 ~~~~L~I~~v~~~D~G~Y~-C~a~n~~~~~~~s~~S~~~~l~V~g 198 (218)
T 1uct_A 155 HPANFSLGPVDLNVSGIYR-CYGWYNRSPYLWSFPSNALELVVTD 198 (218)
T ss_dssp SSEEEECCSCCGGGCEEEE-EEEECTTSTTEECCCCCCEEEEEC-
T ss_pred ccCEEEEccCCcccCEEEE-EEEEcCCCCCcCCCCCCcEEEEEec
Confidence 2349999999999999999 99998643 233456677766
No 289
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Probab=99.73 E-value=8.8e-17 Score=166.20 Aligned_cols=177 Identities=19% Similarity=0.260 Sum_probs=126.1
Q ss_pred CCCceEEeCCCeEEEEEEecccCc-----eEEEEEECCeeC---------C-------CCceEEecc------ceEEEcc
Q psy574 105 GPKDTTVSASSIIVFECSVGGDAV-----LTVHWKRLGSAM---------P-------EDRMSVLPS------RSLQLSD 157 (977)
Q Consensus 105 ~p~~~~v~~G~~v~l~C~v~g~p~-----~~i~W~k~~~~l---------~-------~~~~~~~~~------~~L~I~~ 157 (977)
++..+.+.+|+++.|.|.+.+.|. ..+.|+|++..+ . .++..+..+ .+|.|.+
T Consensus 7 p~~~v~~~~G~~v~L~C~~~~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~ 86 (222)
T 3sbw_C 7 PKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITD 86 (222)
T ss_dssp SCSEEEEETTSCEEEEEECCCCSSCCTTTCEEEEEETTEEEEEEETTEECSSSSCGGGSSSEEECHHHHTTTEEEEEESS
T ss_pred CCccEEEEcCCcEEEEeEecCCCCCCCccEEEEEEECCcEEEEEeCCccccccccccccCceEEccccccCCEEEEEEcC
Confidence 455668899999999999977663 489999975221 1 234444422 4899999
Q ss_pred CccCCCeEEEEEEEeCCeeEEEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCcc
Q psy574 158 VRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRV 237 (977)
Q Consensus 158 v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~ 237 (977)
++.+|+|.|+|.+.| .+.....+.|.|..++..........+.+|+.++|.|.+.|.|.+.+.|++++..... ..
T Consensus 87 v~~~D~G~Y~C~~~~-~~~~~~~~~l~V~~~~~~~~~~~~~~~~~g~~v~L~C~~~g~P~p~i~W~~~~g~~~~----~~ 161 (222)
T 3sbw_C 87 VKLQDAGVYRCMISY-GGADYKRITVKVNAPYNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLS----GK 161 (222)
T ss_dssp CCGGGCEEEEEEEES-SSEEEEEEEEEEEBCCCCCEEEEEEEETTTTEEEEEEEEEEBSCCEEEEEETTCCEEC----CE
T ss_pred cccccCeEEEEEEEe-CCCceeEEEEEEECCCCCCCceeeeeecCCCcEEEEEEecCCCCCeEEEEECCCceec----Cc
Confidence 999999999999999 5667778899998766543222223567899999999999999999999999433321 11
Q ss_pred ccEEEEEccCCc-eEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEEC
Q psy574 238 DNIQAEITSDGM-NLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSG 287 (977)
Q Consensus 238 ~~~~~~~~~~g~-s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~ 287 (977)
.........++. ....+..+...|.|.|+ |.|.|..|.....+.|.|..
T Consensus 162 ~~~~~~~~~~~~~~~~~~l~v~~~d~g~Y~-C~a~n~~g~~~~~~~l~v~~ 211 (222)
T 3sbw_C 162 TTTTNSKREEKLFNVTSTLRINTTTNEIFY-CTFRRLDPEENHTAELVIPE 211 (222)
T ss_dssp EEEEECC----CEEEEEEEEEECCTTCEEE-EEEEETTTTEEEEEEEECCC
T ss_pred cceEEEcCCCCCEEEEEEEEEeccCCcEEE-EEEEeCccceeeEEEEEecC
Confidence 111111111221 12223345678999999 99999999999999999886
No 290
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Probab=99.73 E-value=2.7e-17 Score=162.27 Aligned_cols=153 Identities=14% Similarity=0.165 Sum_probs=115.3
Q ss_pred ccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeec----------CCCceEEEe-cCcEEEEcCCCCCCCeEEEEEE
Q psy574 12 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDF----------ENSKRLRLV-DGTNLAIQDSRKTDDGRYQCVV 80 (977)
Q Consensus 12 p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~----------~~~~r~~~~-~~g~L~I~~v~~~D~G~Y~C~a 80 (977)
+..+.+.+|++|+|.|.+ . .|.+.|.|+|++..+.. ...+|+.+. .+++|.|.+++.+|+|.|+|.+
T Consensus 2 ~~~v~~~~G~~VtL~c~~-~-~~~~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~~~~~~sL~I~~v~~~DsG~Y~C~~ 79 (171)
T 1ccz_A 2 SQQIYGVVYGNVTFHVPS-N-VPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMES 79 (171)
T ss_dssp EEEEEEETTCCEEECCCC-S-SCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEEC
T ss_pred ccEEEEEcCCCEEEcCCC-C-CCcceEEEEeCCcEEEEEcCCCcccccccCCcEEEeCCCCeEEECCCChhhCceEEEEE
Confidence 346889999999999988 4 48899999999875521 123466664 5789999999999999999999
Q ss_pred EecCceeeeEeEEEEEEcCC---eEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceEEeccceEEEcc
Q psy574 81 KNVAGTRESTDAVLRVLVKP---YIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSD 157 (977)
Q Consensus 81 ~n~~g~~~s~~~~l~V~~~P---~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~~~~~L~I~~ 157 (977)
.|..| +..+.|.|..++ .+..... ...|.|.+.+.|.+.|.|+|++..++.. ....|.+.
T Consensus 80 ~n~~~---~~~~~L~V~~~~~~p~i~~~~~--------~~~L~C~~~~~p~p~i~W~~~~~~l~~~-----~~~~l~~~- 142 (171)
T 1ccz_A 80 PNITD---TMKFFLYVLEMVSKPMIYWECS--------NATLTCEVLEGTDVELKLYQGKEHLRSL-----RQKTMSYQ- 142 (171)
T ss_dssp TTCCS---CEEEEEEEECCCCCCEEEEETT--------TTEEEEECSSCSSCEEEEEETTEEEEEE-----SSSEEEEE-
T ss_pred eCCCC---cEEEEEEEECcCCCCEEEEecC--------CcEEEEEeCCCCCcEEEEEECCEECcCC-----cceEEEEe-
Confidence 88777 466788888653 2222111 1379999998899999999999887532 22334444
Q ss_pred CccCCCeEEEEEEEeCCeeEEEEEEEE
Q psy574 158 VRLEDAGEYVCEAENAVGKISASATLT 184 (977)
Q Consensus 158 v~~~D~G~Y~C~a~n~~g~~~~~~~L~ 184 (977)
...|+|.|+|.|.|..+..++.+.|.
T Consensus 143 -~~~~~g~Y~C~a~N~~~~~~~~~~l~ 168 (171)
T 1ccz_A 143 -WTNLRAPFKCKAVNRVSQESEMEVVN 168 (171)
T ss_dssp -CSCCSSCEEEEEEETTEEEEEEECCC
T ss_pred -ccCCCceEEEEEEcccCcccceeEEe
Confidence 36789999999999999877665543
No 291
>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}
Probab=99.73 E-value=2.9e-17 Score=174.18 Aligned_cols=166 Identities=19% Similarity=0.281 Sum_probs=117.6
Q ss_pred ceecccceEEeCCCcEEEEEECCCCC--CCCeEEEEeCC--E---Eee-------cCCCceEEEecC---cEEEEcCCCC
Q psy574 8 FRVQPKSQRVAAGDTALLECGPPRGH--PEPTLVWKKNG--H---PID-------FENSKRLRLVDG---TNLAIQDSRK 70 (977)
Q Consensus 8 ~~~~p~~~~v~~G~~v~L~C~~~~g~--P~~~v~W~k~g--~---~l~-------~~~~~r~~~~~~---g~L~I~~v~~ 70 (977)
...+|..+.+.+|++|+|.|.+ .+. |.+.|.|+|++ . .+. .....|+.+..+ .+|.|.+++.
T Consensus 5 ~v~~p~~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~ 83 (256)
T 3ux9_B 5 VLTQPPSVSGAPGQRVTISCSG-SSSNIGSNYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSKSGTSASLAITGLQS 83 (256)
T ss_dssp CCBCCSEEEECTTCCEEEEEEC-CTTTTTTSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCG
T ss_pred eEecCCcEEEcCCCcEEEEEec-CCCCCCCceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEccCCEEEEEECCCCh
Confidence 3445667999999999999999 555 78899999842 1 111 112356666543 2699999999
Q ss_pred CCCeEEEEEEEecCce--eeeEeEEEEEEcCCe--------------------EEeCCCceEEeCCCeEEEEEEecccC-
Q psy574 71 TDDGRYQCVVKNVAGT--RESTDAVLRVLVKPY--------------------IIRGPKDTTVSASSIIVFECSVGGDA- 127 (977)
Q Consensus 71 ~D~G~Y~C~a~n~~g~--~~s~~~~l~V~~~P~--------------------~~~~p~~~~v~~G~~v~l~C~v~g~p- 127 (977)
+|+|.|+|.+.+..+. .....+.|.|..++. .+..+....+.+|++++|.|.+.+.+
T Consensus 84 ~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~ 163 (256)
T 3ux9_B 84 EDEADYYCQVRDNNENEWVFGGGTKLTVLGSGGSTITSYNVYYTKLSSSGSEVQLVESGGGLVQPGGSLRLSCAASGFTF 163 (256)
T ss_dssp GGCEEEEEEEEETTTTEEEECCCEEEEEC----------------------CCEEEEECCEEECTTCCEEEEEEEESSCG
T ss_pred hhCEEEEEEEEECCCCceEECCCEEEEEECCCCCcCccceeEEeecCCCccceeEEcCCCeEEcCCCeEEEEEEEeCCcc
Confidence 9999999999986532 223456788876542 23334455689999999999998766
Q ss_pred -ceEEEEEECC--eeC------------------CCCceEEecc-----ceEEEccCccCCCeEEEEEEEeCC
Q psy574 128 -VLTVHWKRLG--SAM------------------PEDRMSVLPS-----RSLQLSDVRLEDAGEYVCEAENAV 174 (977)
Q Consensus 128 -~~~i~W~k~~--~~l------------------~~~~~~~~~~-----~~L~I~~v~~~D~G~Y~C~a~n~~ 174 (977)
.+.+.|+|++ ..+ ..+|+.+..+ .+|.|.+++.+|+|.|+|.|.|..
T Consensus 164 ~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~ 236 (256)
T 3ux9_B 164 SSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARYIDF 236 (256)
T ss_dssp GGSEEEEEEECTTCCEEEEEEECSSSSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred cccEEEEEEECCCCCcEEEEEEccCCCceecCccccceEEEEecCCCCEEEEEECCCChhhCEEEEEEEEcCC
Confidence 7899999973 211 1125554422 359999999999999999999863
No 292
>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L
Probab=99.73 E-value=8e-18 Score=178.02 Aligned_cols=170 Identities=19% Similarity=0.219 Sum_probs=124.6
Q ss_pred ccceecccceEEeCCCcEEEEEECCCCCC-----CCeEEEEeCC--EE---e-------ecCCCceEEEecCc---EEEE
Q psy574 6 EEFRVQPKSQRVAAGDTALLECGPPRGHP-----EPTLVWKKNG--HP---I-------DFENSKRLRLVDGT---NLAI 65 (977)
Q Consensus 6 ~~~~~~p~~~~v~~G~~v~L~C~~~~g~P-----~~~v~W~k~g--~~---l-------~~~~~~r~~~~~~g---~L~I 65 (977)
..+...|..+.+.+|++|+|.|.+ .+.| .+.|.|+|++ .. + ......|+.+..++ +|.|
T Consensus 35 ~~v~~~p~~~~v~~G~~v~L~C~~-~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I 113 (252)
T 3bkj_L 35 VLMTQTPLSLPVNLGEQASISCRS-SQSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSGSGTDFTLRI 113 (252)
T ss_dssp CCEEEECSEEEECTTSCEEEEEEE-SSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEE
T ss_pred cEEEeCCceEEEeCCCcEEEEEEc-CCCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEccCCEEEEEE
Confidence 345566888999999999999999 6666 6899999954 11 1 11224567665433 7999
Q ss_pred cCCCCCCCeEEEEEEEecCceeeeEeEEEEEEc---CCeEEeCCCceEEeCCCeEEEEEEecc-cCce-EEEEEECCeeC
Q psy574 66 QDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLV---KPYIIRGPKDTTVSASSIIVFECSVGG-DAVL-TVHWKRLGSAM 140 (977)
Q Consensus 66 ~~v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V~~---~P~~~~~p~~~~v~~G~~v~l~C~v~g-~p~~-~i~W~k~~~~l 140 (977)
.+++.+|+|.|+|.+.+..+......+.|.|.. +|.+...+....+.+|+.++|.|.+.| .|.+ .|.|+|++..+
T Consensus 114 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~ 193 (252)
T 3bkj_L 114 SRVEAEDLGVYYCFQASLVPLTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSER 193 (252)
T ss_dssp SSCCGGGCEEEEEEECSBSSCEECCCEEEEECCCCBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEEE
T ss_pred CCCCcccCEEEEEEEEcCCccEECCCEEEEEeCCCcCcEEEEeCCChhhcCCCcEEEEEEEeeEeCCCcEEEEEECCeec
Confidence 999999999999999987654334445777764 566666444444557999999999987 4543 79999999987
Q ss_pred CCC-ceEE----ecc------ceEEEccCccCCCeEEEEEEEeCCee
Q psy574 141 PED-RMSV----LPS------RSLQLSDVRLEDAGEYVCEAENAVGK 176 (977)
Q Consensus 141 ~~~-~~~~----~~~------~~L~I~~v~~~D~G~Y~C~a~n~~g~ 176 (977)
..+ .... ..+ ..|.|.++..+|+|.|+|.|.|....
T Consensus 194 ~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~ 240 (252)
T 3bkj_L 194 QNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST 240 (252)
T ss_dssp CSSEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCS
T ss_pred CCCeeeecCcccCCCCCEEEEEEEEEcchhccCCCeEEEEEEeCCCC
Confidence 654 1111 122 35999999999999999999997643
No 293
>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*
Probab=99.73 E-value=1.7e-17 Score=171.43 Aligned_cols=171 Identities=15% Similarity=0.237 Sum_probs=123.6
Q ss_pred ecccceEEeCCCcEEEEEECCCCCC--CCeEEEEeCC--EE---e-ec-------------CCCceEEEec---C--cEE
Q psy574 10 VQPKSQRVAAGDTALLECGPPRGHP--EPTLVWKKNG--HP---I-DF-------------ENSKRLRLVD---G--TNL 63 (977)
Q Consensus 10 ~~p~~~~v~~G~~v~L~C~~~~g~P--~~~v~W~k~g--~~---l-~~-------------~~~~r~~~~~---~--g~L 63 (977)
.+|..+.+.+|++++|.|.+ .+.| .+.|.|+|++ .. + .. ...+|+.+.. . .+|
T Consensus 5 ~~p~~~~~~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L 83 (220)
T 1pz5_B 5 EESGGGLVQPGGSMKLSCVA-SGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSSVYL 83 (220)
T ss_dssp EEECCEEECTTCCEEEEEEE-ESSCGGGSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEGGGTEEEE
T ss_pred eccCCEEEcCCCeEEEEEEE-cCCccCCccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeCCCCeEEE
Confidence 45778999999999999998 5555 6899999953 21 1 11 0135777653 2 379
Q ss_pred EEcCCCCCCCeEEEEEEEecCcee--eeEeEEEEEE----cCCeEEeCCCceEEeCCCeEEEEEEeccc-Cce-EEEEEE
Q psy574 64 AIQDSRKTDDGRYQCVVKNVAGTR--ESTDAVLRVL----VKPYIIRGPKDTTVSASSIIVFECSVGGD-AVL-TVHWKR 135 (977)
Q Consensus 64 ~I~~v~~~D~G~Y~C~a~n~~g~~--~s~~~~l~V~----~~P~~~~~p~~~~v~~G~~v~l~C~v~g~-p~~-~i~W~k 135 (977)
.|.+++.+|+|.|+|.+.+..+.. ....+.|.|. .+|.+...+....+.+|+.++|.|.+.|. |.+ .|.|++
T Consensus 84 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~ 163 (220)
T 1pz5_B 84 QMNNLRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSATTTAPSVYPLVPGCSDTSGSSVTLGCLVKGYFPEPVTVKWNY 163 (220)
T ss_dssp EECSCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCSCCSCSSSEEEEEEEEEEBSSCCEEEEGG
T ss_pred EEccCCHHHCEEEEEEEecCCcccceECCCEEEEEccCCCCCCeEEEcccccccCCCCcEEEEEEEEEEeCCCeEEEEec
Confidence 999999999999999999875432 1244678876 34665554444456789999999999887 888 999999
Q ss_pred CCeeCC---CCc----eEEeccceEEEccCccCCCeEEEEEEEeCCeeEEEEEE
Q psy574 136 LGSAMP---EDR----MSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASAT 182 (977)
Q Consensus 136 ~~~~l~---~~~----~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~ 182 (977)
++..+. ... ......+.|.|.++..+| |.|+|.|.|..+..++.+.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~~ 216 (220)
T 1pz5_B 164 GALSSGVRTVSSVLQSGFYSLSSLVTVPSSTWPS-QTVICNVAHPASKVDLIKE 216 (220)
T ss_dssp GTCCTTEEECCCEEETTEEEEEEEEEECGGGTTT-SCCEEEEEEGGGTEEEEEE
T ss_pred CCcccceEEcCCcccCCeEEEEEEEEEcchhcCC-ceEEEEEEECCccEeeeec
Confidence 886411 111 111234679999998866 9999999999987665544
No 294
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Probab=99.73 E-value=3.2e-17 Score=164.13 Aligned_cols=156 Identities=16% Similarity=0.235 Sum_probs=125.4
Q ss_pred ceEEeCCCeEEEEEEecccCceEEEEEECCeeCC---------------CCceEEec------cceEEEccCccCCCeEE
Q psy574 108 DTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMP---------------EDRMSVLP------SRSLQLSDVRLEDAGEY 166 (977)
Q Consensus 108 ~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~---------------~~~~~~~~------~~~L~I~~v~~~D~G~Y 166 (977)
.+.+.+|++++|.|.+.+.|.+.+.|+|++..+. ..++.... ..+|.|.+++.+|+|.|
T Consensus 4 ~v~~~~G~~v~L~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~D~G~Y 83 (184)
T 2ny1_B 4 VVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTY 83 (184)
T ss_dssp EEEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSCTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEE
T ss_pred cEEEeCCCCEEEEEEEcCCCceEEEEEeCCccceEEecCceEecCChhhCCccccccccccCCeEEEEEecCCHHHCEEE
Confidence 4578899999999999989999999999986311 12333321 34599999999999999
Q ss_pred EEEEEeCCeeEEEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCccccEEEEEcc
Q psy574 167 VCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITS 246 (977)
Q Consensus 167 ~C~a~n~~g~~~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~ 246 (977)
+|.+.|..+ .+.|.|.. +. .+....+.+|+.++|.|.+.+.|.+.+.|++++..+..
T Consensus 84 ~C~~~~~~~----~~~l~V~~---~~-~~~~~~v~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~--------------- 140 (184)
T 2ny1_B 84 ICEVEDQKE----EVQLLVFG---LT-ANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQ--------------- 140 (184)
T ss_dssp EEEETTEEE----EEEEEEEE---EE-ESSCSEEETTCCEEEEEECCTTCCCEEEEECTTSCEEE---------------
T ss_pred EEEEEcCCC----cEEEEEEE---ec-CCCCceeecCCCEEEEEEcCCCCCCEEEEEeCCCcccc---------------
Confidence 999987654 45666663 22 24556889999999999999999999999998865411
Q ss_pred CCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEECC
Q psy574 247 DGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGP 288 (977)
Q Consensus 247 ~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~~ 288 (977)
....|.|.+++.+|+|.|+ |.|.|..+.....+.|.|.+.
T Consensus 141 -~~~~L~i~~v~~~d~G~Y~-C~a~n~~~~~~~~~~l~V~~~ 180 (184)
T 2ny1_B 141 -GGKTLSVSQLELQDSGTWT-CTVLQNQKKVEFKIDIVVLAF 180 (184)
T ss_dssp -ESSEEEESSCCGGGCEEEE-EEEEETTEEEEEEEEEEEECC
T ss_pred -CceEEEEecCCcCCCeEEE-EEEEECCceEEEEEEEEEEec
Confidence 1239999999999999999 999999999999999999884
No 295
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*
Probab=99.73 E-value=3e-17 Score=175.23 Aligned_cols=202 Identities=21% Similarity=0.248 Sum_probs=129.8
Q ss_pred CeEEeCCCceEEeCCCeEEEEEEec---ccCceEEEEEECCeeCCC-------------------CceEEe-----ccce
Q psy574 100 PYIIRGPKDTTVSASSIIVFECSVG---GDAVLTVHWKRLGSAMPE-------------------DRMSVL-----PSRS 152 (977)
Q Consensus 100 P~~~~~p~~~~v~~G~~v~l~C~v~---g~p~~~i~W~k~~~~l~~-------------------~~~~~~-----~~~~ 152 (977)
+.+...+....+.+|+++.|.|.+. +.+.+.|.|+|++..... ++..+. .+.+
T Consensus 6 ~~v~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 85 (268)
T 3mj6_A 6 PGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGS 85 (268)
T ss_dssp ------CCEEEEETTCCEEECCBCCCSSCCCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSCTTTTBCC
T ss_pred cccccCCCceEEecCCcEEEEEEeecCCCCceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeecCCCCEEE
Confidence 4556667788999999999999997 788899999997654321 333332 2378
Q ss_pred EEEccCccCCCeEEEEEEEeCCee--EEEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEE---ecCCCCeEEEEEcCe
Q psy574 153 LQLSDVRLEDAGEYVCEAENAVGK--ISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGI---EGSPPPSTFWMLEGN 227 (977)
Q Consensus 153 L~I~~v~~~D~G~Y~C~a~n~~g~--~~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~---~g~p~~~i~W~~~g~ 227 (977)
|.|.+++.+|+|.|+|.+.|..+. ....+.|.|. ...|....+.+|+.++|.|.+ .+.|.+.+.|++++.
T Consensus 86 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~-----~~~p~~~~v~~G~~v~L~C~~~~~~~~p~~~v~W~~~~~ 160 (268)
T 3mj6_A 86 LLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVL-----PEEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSG 160 (268)
T ss_dssp EEECSCCGGGCEEEEEEEEETTCCCEEEEEEEEEEE-----CCCCSEEEEETTCCEEECCBCEESSSSCCCEEEEEEECT
T ss_pred EEECCCCHhHCEEEEEEEEecCCcceEEEEEEEEEe-----ccCCCccccccCCcEEEEEEecCCCCCCccceEEEecCC
Confidence 999999999999999999987654 4555666664 124556789999999999999 667899999999532
Q ss_pred eee-----------------ecCCCccccEEEEEc-cCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEECCC
Q psy574 228 RSL-----------------IYPGDRVDNIQAEIT-SDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPD 289 (977)
Q Consensus 228 ~~~-----------------~~~~~~~~~~~~~~~-~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~~~ 289 (977)
... ........++.+... ..+...|.|.+++.+|+|.|+ |.|.|..|.....+.|.|...
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~-C~a~n~~g~~~~~~~l~V~~~- 238 (268)
T 3mj6_A 161 SHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYT-CSIYVGKLESRKTIVLHVVQD- 238 (268)
T ss_dssp TCSSCEEEEEEETTSSSCEEECSSTTTTTEEECSCGGGTBCCEEECSCCGGGCEEEE-EEEEETTEEEEEEEEEEEECC-
T ss_pred CCCcceeEEEecCCCCccccccccccccceEeeccCCCCeEEEEECcCChhhCeEEE-EEEEcCCceEEEEEEEEEEcC-
Confidence 210 000011112222110 012358999999999999999 999999998888899998653
Q ss_pred CCCCCeEEeCCCceeecCCCcE
Q psy574 290 PNPPPVILFGPANQTLPLRSEA 311 (977)
Q Consensus 290 ~~~pp~i~~~p~~~~v~~g~~~ 311 (977)
+|.+...|.+.++..|+.+
T Consensus 239 ---~p~~~~~p~~~~~~~~q~~ 257 (268)
T 3mj6_A 239 ---EFQRTISPTPPTDKGQQGI 257 (268)
T ss_dssp ----------------------
T ss_pred ---CCeeeeCCCCCCCCcceec
Confidence 5666677777776666543
No 296
>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*
Probab=99.73 E-value=2.4e-17 Score=170.35 Aligned_cols=176 Identities=21% Similarity=0.292 Sum_probs=130.5
Q ss_pred cccceEEeCCCcEEEEEECCCCCCCC---eEEEEeCCEEeec--------------CCCceEEEe----------cCcEE
Q psy574 11 QPKSQRVAAGDTALLECGPPRGHPEP---TLVWKKNGHPIDF--------------ENSKRLRLV----------DGTNL 63 (977)
Q Consensus 11 ~p~~~~v~~G~~v~L~C~~~~g~P~~---~v~W~k~g~~l~~--------------~~~~r~~~~----------~~g~L 63 (977)
.|.++.+..|++|+|.|.+ .+.|.+ .|.|+|++..+.. ....|..+. .+++|
T Consensus 7 vp~~V~~~~G~~v~L~C~~-~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL 85 (225)
T 4fmk_A 7 VLPEVRGRLGGTVELPCHL-LPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATL 85 (225)
T ss_dssp CCSEEEEETTSCEEECCEE-CSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCCE
T ss_pred eCCEEEEecCCCEEEEEEE-ECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcEEE
Confidence 3667999999999999998 566655 4899997644310 112233222 23579
Q ss_pred EEcCCCCCCCeEEEEEEEecCceeeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEe-cccCceEEEEEECCeeCCC
Q psy574 64 AIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSV-GGDAVLTVHWKRLGSAMPE 142 (977)
Q Consensus 64 ~I~~v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v-~g~p~~~i~W~k~~~~l~~ 142 (977)
.|.+++.+|+|.|+|.+.+..+........+.+..+|.....+.......++.+.+.|.+ .+.|.+.+.|++++..+..
T Consensus 86 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~P~~~~~w~~~~~~~~~ 165 (225)
T 4fmk_A 86 AFRGLRVEDEGNYTCEFATFPNGTRRGVTWLRVIAQPENHAEAQEVTIGPQSVAVARCVSTGGRPPARITWISSLGGEAK 165 (225)
T ss_dssp EECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEEEECCBCCSSSCEEEEEEEEEEEBSCCEEEEECSSCCEEE
T ss_pred EEccCCHHHCcceEEEEEeCCCcceeeeeeeeeecCCceeecccceeecceeeeeeeeeecCCCCCCEEEEEECCccccC
Confidence 999999999999999999988877767777888888877777766677778888888776 6788899999999766533
Q ss_pred CceEEe-c------cceEEEccCccCCCeEEEEEEEeCCee--EEEEEEEEEee
Q psy574 143 DRMSVL-P------SRSLQLSDVRLEDAGEYVCEAENAVGK--ISASATLTVQM 187 (977)
Q Consensus 143 ~~~~~~-~------~~~L~I~~v~~~D~G~Y~C~a~n~~g~--~~~~~~L~V~~ 187 (977)
...... . .+.|.|.++..+|+|.|+|.|.|..+. .+..+.|.|+.
T Consensus 166 ~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~~~~~~~~~v~l~V~Y 219 (225)
T 4fmk_A 166 DTQEPGIQAGTVTIISRYSLVPVGRADGVKVTCRVEHESFEEPILLPVTLSVRY 219 (225)
T ss_dssp EEEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCBTT
T ss_pred CcceEEecCCCEEEEEEEEEeeCCHHHCCEEEEEEEcCCCCeEEEEEEEEEEEE
Confidence 222111 1 246999999999999999999998775 45566666653
No 297
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Probab=99.73 E-value=2.2e-17 Score=171.82 Aligned_cols=169 Identities=17% Similarity=0.277 Sum_probs=128.9
Q ss_pred EeCCCceEEeCCCeEEEEEEecccCc-eEEEEEECCeeCC--------------CCceE----------EeccceEEEcc
Q psy574 103 IRGPKDTTVSASSIIVFECSVGGDAV-LTVHWKRLGSAMP--------------EDRMS----------VLPSRSLQLSD 157 (977)
Q Consensus 103 ~~~p~~~~v~~G~~v~l~C~v~g~p~-~~i~W~k~~~~l~--------------~~~~~----------~~~~~~L~I~~ 157 (977)
+..|.+..+.+|+++.|.|.+.+.+. +.+.|+|++.... ..+.. +..++.|.|.+
T Consensus 4 v~~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~L~i~~ 83 (231)
T 2pet_A 4 LSVPPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQGRLVLAE 83 (231)
T ss_dssp CCCCSEEEEETTCCEEECCCCBSCCSEEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEECTTCCEEESS
T ss_pred ccCCCcEEEEcCCCEEEecccCCCCCceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccCCCceEEEcc
Confidence 34577889999999999999998885 8999998765422 22333 55567799999
Q ss_pred CccCCCeEEEEEEEeCC-eeEEEEEEEEEeeC---CeEEecCCCcEEeeCCeE-EEEEEE-ecCCCCeEEEEEcCeeeee
Q psy574 158 VRLEDAGEYVCEAENAV-GKISASATLTVQMA---PIVRERPSDLRLEVGRDA-VFLCGI-EGSPPPSTFWMLEGNRSLI 231 (977)
Q Consensus 158 v~~~D~G~Y~C~a~n~~-g~~~~~~~L~V~~~---p~~~~~p~~~~v~~G~~v-~L~C~~-~g~p~~~i~W~~~g~~~~~ 231 (977)
++.+|+|.|+|.+.+.. +..+..+.|.|..+ |.+...+....+.+|+.+ +|.|.+ .+.|.+.+.|++++..+..
T Consensus 84 v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~g~~~~~l~C~~~~~~p~p~i~W~~~~~~~~~ 163 (231)
T 2pet_A 84 AQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEV 163 (231)
T ss_dssp CCGGGCEEEEEEEECGGGCEEEEEEEEEEEBCCCCCEEEECCSSCCTTCCSEEEEEEEEEEEEBSCCEEEEEETTEECCC
T ss_pred cCcccCceEEEEEEecCCCceEEEEEEEEEecCCCcEEecCCcceeecCCCceEEEEEEeECcccCCEEEEEECCccCcc
Confidence 99999999999999987 77888999999976 455666666778899988 999999 8999999999999987753
Q ss_pred cCCCccccEEEEE----ccCC----ceEEEEeecccCCCCeEEEEEEEcC
Q psy574 232 YPGDRVDNIQAEI----TSDG----MNLLKIQNVSRTAAPLIILCLGVNA 273 (977)
Q Consensus 232 ~~~~~~~~~~~~~----~~~g----~s~L~I~~v~~~d~G~Y~~C~a~n~ 273 (977)
... ...++.+.. ...| .+.|.|.....+|.|.|+ |.|.|.
T Consensus 164 ~~~-~~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~dd~g~Y~-C~a~n~ 211 (231)
T 2pet_A 164 PVE-MNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFH-CAAHYS 211 (231)
T ss_dssp CSS-CCSSEEEEEEEEECTTSCEEEEEEEEEECCGGGGGCEEE-EEEEEE
T ss_pred ccc-cccceeecceeEecCCCeEEEEEEEEEecchhhCCceEE-EEEEcC
Confidence 221 112333322 1111 146888866666799999 999995
No 298
>3lqm_A Interleukin-10 receptor subunit beta; IL-10R2, common chain, cytokine, IL-10, IL-22, IL- 28, IL-29, disulfide bond, glycoprotein, membrane; 2.14A {Homo sapiens}
Probab=99.73 E-value=1.4e-16 Score=161.34 Aligned_cols=180 Identities=12% Similarity=0.100 Sum_probs=136.6
Q ss_pred EEEEEeeEeCCCeEEEEEEec--CCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeecce
Q psy574 547 IELTEVKPMTSTSVKLTWEIL--NTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSV 624 (977)
Q Consensus 547 ~~~l~~~~~~~tsv~lsW~~p--~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g 624 (977)
|+++++...+.. ..|+|++| .++.+ .|.|+|+.. ..|...... ...+.+.|++|.+++.|.|+|+|.+..+
T Consensus 5 P~nv~~~s~n~~-~iL~W~pp~~~~~~v-~Y~V~y~~~---~~w~~~c~~--~~~~~c~lt~l~~~~~Y~~rV~A~~~~~ 77 (201)
T 3lqm_A 5 PENVRMNSVNFK-NILQWESPAFAKGQL-TFTAQYLSY---RIFQDKCMQ--TTLTECDFSSLSKYGDHTLRVRAEFADE 77 (201)
T ss_dssp CEEEEEEEETTE-EEEEEECCCCSSSCC-EEEEEEEET---TEEEEEEEE--ESSSEEECTTSCSSSCEEEEEEEEETTE
T ss_pred CcccEEEEECCc-eEEEECCCCCCCCCe-EEEEEEEEC---CCcccCcCc--cCCCEEECCCCccCCCEEEEEEEecCCC
Confidence 378988888765 57999999 34444 599999986 367654333 3568999999999999999999999999
Q ss_pred eCCCCCceEEeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCe---------eeeEEEEEEEecCCcceEEEEec
Q psy574 625 DGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNG---------VIRTYQIIVGGGNNSALINMTVS 695 (977)
Q Consensus 625 ~g~~s~~~~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng---------~i~~Y~v~~~~~~~~~~~~~~~~ 695 (977)
.|.++.. .|........+|| .+++.. ..++|.|.|.+|.. ..+| .+..|+|.|++++..... .+.
T Consensus 78 ~S~~s~~-~f~~~~~t~~~PP-~v~~~~-~~~si~v~w~~P~~-~~~~~~~~~~~~~~~l~Y~v~y~~~~~~~~~--~~~ 151 (201)
T 3lqm_A 78 HSDWVQI-TFSPVDDTIIGPP-GMQVEV-LADCLHMRFLAPKI-ENEYETWTMKNVYNSWTYNVQYWKQGTDEKF--QIT 151 (201)
T ss_dssp ECCCEEE-EECHHHHSBCCCC-EEEEEE-ETTEEEEEEECCEE-ECSSCEEEHHHHCTTCEEEEEEEETTCCCCE--EEC
T ss_pred cCcceee-eeeecccCeeCCC-EEEEEE-eCCEEEEEEcCCCc-cCCCcccCHHHhCCceEEEEEEEECCCCcEE--EEE
Confidence 8888763 4533222223466 678754 46899999999942 2224 378999999885533222 344
Q ss_pred CCcCeEEecCCCCCceEEEEEEEEcC--CCcCCCCCceEEeecCCC
Q psy574 696 ASTPTLLLTNLSAGIRYSVSLAATNR--AGTGPYSRPALLSLTSGP 739 (977)
Q Consensus 696 ~~~~~~~l~~L~p~t~Y~~~V~A~~~--~G~g~~S~~~~~~t~~~~ 739 (977)
...+.++|.+|+|++.|.|+|+|++. .|.|.+|+++.++|....
T Consensus 152 ~~~~~~~l~~L~p~t~Ycv~V~a~~~~~~~~g~~S~~~c~~T~~~~ 197 (201)
T 3lqm_A 152 PQYDFEVLRNLEPWTTYCVQVRGFLPDRNKAGEWSEPVCEQTTHDE 197 (201)
T ss_dssp CSSSEEEECSCCTTCEEEEEEEEEETTTTEECCCCCCEEEECCCGG
T ss_pred ecCceEEEecCCCCCcEEEEEEEEeccCCCCCCcCCCEeEEeCCCC
Confidence 67789999999999999999999997 789999999999987643
No 299
>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...
Probab=99.72 E-value=2.8e-17 Score=170.80 Aligned_cols=181 Identities=15% Similarity=0.170 Sum_probs=123.0
Q ss_pred eecccceEEeCCCcEEEEEECCCCCC--CCeEEEEeCC--EE---e---ec---------CCCceEEEec-----CcEEE
Q psy574 9 RVQPKSQRVAAGDTALLECGPPRGHP--EPTLVWKKNG--HP---I---DF---------ENSKRLRLVD-----GTNLA 64 (977)
Q Consensus 9 ~~~p~~~~v~~G~~v~L~C~~~~g~P--~~~v~W~k~g--~~---l---~~---------~~~~r~~~~~-----~g~L~ 64 (977)
..+|..+.+.+|++|+|.|.+ .+.| .+.|.|+|++ .. + .. ...+|+.+.. +.+|.
T Consensus 4 l~qp~~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~ 82 (227)
T 1mju_H 4 LQQPGAELVKPGASVKLSCKA-SGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQ 82 (227)
T ss_dssp EECCSEEEECTTCCEEEEEEE-ESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEE
T ss_pred EcCCCCeEEcCCCCEEEEEEe-cCCccccceEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeCCCCeEEEE
Confidence 346778999999999999998 5655 6789999853 22 1 00 1135777653 35799
Q ss_pred EcCCCCCCCeEEEEEEEecCceeeeEeEEEEEEc----CCeEEeCCCceEEeCCCeEEEEEEeccc-Cce-EEEEEECCe
Q psy574 65 IQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLV----KPYIIRGPKDTTVSASSIIVFECSVGGD-AVL-TVHWKRLGS 138 (977)
Q Consensus 65 I~~v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V~~----~P~~~~~p~~~~v~~G~~v~l~C~v~g~-p~~-~i~W~k~~~ 138 (977)
|.+++.+|+|.|+|.+.+..+......+.|.|.. +|.+...+....+.+|+.++|.|.+.|. |.+ .|.|+|++.
T Consensus 83 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~ 162 (227)
T 1mju_H 83 LSSLTSDDSAVYYCANKLGWFPYWGQGTLVTVSAAKTTAPSVYPLAPVCGDTSGSSVTLGCLVKGYFPEPVTLTWNSGSL 162 (227)
T ss_dssp ECSCCGGGCEEEEEEEEETTEEEECCCEEEEECSSCCBCCEEEEECCCC------CEEEEEEEEEEBSSCCEEEEGGGTB
T ss_pred ECCCCcccCEEEEEEECCCCceEEcCcEEEEEcCCCCCCCEEEEecCCccccCCCcEEEEEEeecEeCCCeEEEEecCCC
Confidence 9999999999999999986432223445788874 3555443323356789999999999875 776 999999987
Q ss_pred eCCC---Cce----EEeccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEEeeCCeE
Q psy574 139 AMPE---DRM----SVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIV 191 (977)
Q Consensus 139 ~l~~---~~~----~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~~~p~~ 191 (977)
.+.. ... .......|.|..+..+| |.|+|.|.|..+.......+.+..+|.-
T Consensus 163 ~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~~~~~~~~p~~ 221 (227)
T 1mju_H 163 SSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKIEPRGPTIK 221 (227)
T ss_dssp CTTEEECCCEEETTEEEEEEEEEECTTTTTT-SCCEEEEEEGGGTEEEEEECCCCCC---
T ss_pred cCCcEECCceecCCeEEEEEEEEEchhhcCC-CeEEEEEEECCCCcceEEEeCCCCCCCC
Confidence 6521 111 11123579999998888 9999999998776666666666666543
No 300
>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*
Probab=99.72 E-value=5.9e-17 Score=166.05 Aligned_cols=169 Identities=18% Similarity=0.273 Sum_probs=123.9
Q ss_pred EEeCCCceEEeCCCeEEEEEEecccCceEEEEEECC--eeC-------------CCCceEEec---cceEEEccCccCCC
Q psy574 102 IIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLG--SAM-------------PEDRMSVLP---SRSLQLSDVRLEDA 163 (977)
Q Consensus 102 ~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~--~~l-------------~~~~~~~~~---~~~L~I~~v~~~D~ 163 (977)
+.. |....+.+|++++|.|.+.+.|.+.|.|+|++ ..+ ..+++.+.. ...|.|.+++.+|+
T Consensus 4 v~q-p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~ 82 (210)
T 1lk3_L 4 LTQ-PPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDT 82 (210)
T ss_dssp EEC-CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred EEC-CCcEEEcCCCCEEEEeeCCCccCCCEEEEEECCCCCeEEEEEccccccCCccccEEEEecCCEEEEEECCCCHHHC
Confidence 344 78889999999999999999888899999953 221 124555442 24899999999999
Q ss_pred eEEEEEEEeCCeeE-EEEEEEEEee---CCeEEecCCCcEEeeCCeEEEEEEEec-CCCC-eEEEEEcCeeeeec-----
Q psy574 164 GEYVCEAENAVGKI-SASATLTVQM---APIVRERPSDLRLEVGRDAVFLCGIEG-SPPP-STFWMLEGNRSLIY----- 232 (977)
Q Consensus 164 G~Y~C~a~n~~g~~-~~~~~L~V~~---~p~~~~~p~~~~v~~G~~v~L~C~~~g-~p~~-~i~W~~~g~~~~~~----- 232 (977)
|.|+|.|.|..+.. ...+.|.|.. +|.+...+....+..|+.++|.|.+.| .|.+ .+.|+|+|..+...
T Consensus 83 G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~ 162 (210)
T 1lk3_L 83 AIYFCQQSWNGPLTFGAGTKLELKRADAAPTVSIFPPSTEQLATGGASVVCLMNNFYPRDISVKWKIDGTERRDGVLDSV 162 (210)
T ss_dssp EEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEECCTTEEEEE
T ss_pred eEEEEEEEcCCCceeCCCEEEEEcCCCcCCeEEEECCchhhccCCcEEEEEEEEeEeCCceEEEEEeCCccCCCCceEcc
Confidence 99999999977643 2345677764 677776555544558999999999987 4544 89999999876321
Q ss_pred --CCCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCcee
Q psy574 233 --PGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDL 278 (977)
Q Consensus 233 --~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~ 278 (977)
.....+.+... +.|.|..++.+|+|.|+ |.|.|......
T Consensus 163 ~~~~~~~~~~~~~------s~L~i~~~~~~d~G~Y~-C~a~n~~~~~~ 203 (210)
T 1lk3_L 163 TDQDSKDSTYSMS------STLSLTKADYESHNLYT-CEVVHKTSSSP 203 (210)
T ss_dssp CCCCTTTCCEEEE------EEEEEEHHHHHTCCEEE-EEEECTTCSSC
T ss_pred CCccCCCCCEEEE------EEEEEChHHhccCCcEE-EEEEecCCCCe
Confidence 00011122222 38999999999999999 99999876543
No 301
>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A
Probab=99.72 E-value=8.1e-17 Score=170.79 Aligned_cols=179 Identities=18% Similarity=0.259 Sum_probs=127.8
Q ss_pred eecccceEEeCCCcEEEEEECCCC--CCCCeEEEEeCC--E---Ee-----------ecCCCceEEEecCc-----EEEE
Q psy574 9 RVQPKSQRVAAGDTALLECGPPRG--HPEPTLVWKKNG--H---PI-----------DFENSKRLRLVDGT-----NLAI 65 (977)
Q Consensus 9 ~~~p~~~~v~~G~~v~L~C~~~~g--~P~~~v~W~k~g--~---~l-----------~~~~~~r~~~~~~g-----~L~I 65 (977)
..+|.++.+.+|++|+|.|.+ .+ .|.+.|.|+|.. . .+ ......|+.+..++ +|.|
T Consensus 12 ~~~p~~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I 90 (257)
T 3gkz_A 12 LQESGPSLVKPSQTLSLTCSV-TGDSVTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDTSKNQVYLQL 90 (257)
T ss_dssp EEEECCSEECTTCCEEEEEEE-EESCCSSCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEGGGTEEEEEE
T ss_pred EECCCCeEEcCCCcEEEEEEE-EcccccceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEecCCceEEEEE
Confidence 446778899999999999998 44 357899999832 1 11 01234577766432 6999
Q ss_pred cCCCCCCCeEEEEEEEecC---ceeeeEeEEEEEEcC--------------CeEEeCCCceEEeCCCeEEEEEEecccCc
Q psy574 66 QDSRKTDDGRYQCVVKNVA---GTRESTDAVLRVLVK--------------PYIIRGPKDTTVSASSIIVFECSVGGDAV 128 (977)
Q Consensus 66 ~~v~~~D~G~Y~C~a~n~~---g~~~s~~~~l~V~~~--------------P~~~~~p~~~~v~~G~~v~l~C~v~g~p~ 128 (977)
.+++.+|+|.|+|.+.|.. ....+..+.|.|..+ |.+...|....+.+|++++|.|.+.+.+.
T Consensus 91 ~~v~~~DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~ 170 (257)
T 3gkz_A 91 KSVSSEDTATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQSPAIMSASPGEKVTLTCSASSSVS 170 (257)
T ss_dssp CSCCGGGCEEEEEEEECTTCTTCEEECCCEEEEEC---------CTTCCCCCCEECSCSEEEECTTCCEEEEEEESSCCC
T ss_pred CCCChhhCEEEEEEEecCCCcceeEEcCCEEEeecCchhhcccccCCCccceEEEcCCceEEEeCCCcEEEEEEEccCcc
Confidence 9999999999999999862 112234567888764 66777788889999999999999988877
Q ss_pred e-EEEEEEC--CeeCC-------------CCceEEe---ccceEEEccCccCCCeEEEEEEEeCCee-EEEEEEEEEeeC
Q psy574 129 L-TVHWKRL--GSAMP-------------EDRMSVL---PSRSLQLSDVRLEDAGEYVCEAENAVGK-ISASATLTVQMA 188 (977)
Q Consensus 129 ~-~i~W~k~--~~~l~-------------~~~~~~~---~~~~L~I~~v~~~D~G~Y~C~a~n~~g~-~~~~~~L~V~~~ 188 (977)
+ .+.|+|+ +..+. .+++... ...+|.|.+++.+|+|.|+|.|.+.... .....+|.|...
T Consensus 171 ~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~fg~gt~l~v~~~ 250 (257)
T 3gkz_A 171 SSHLYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISSMEAEDAASYFCHQWSSFPFTFGSGTKLEIKRA 250 (257)
T ss_dssp GGGEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECCC
T ss_pred ceEEEEEEECCCCCcEEEEEEccccCCCcCCCEEEecCCCEEEEEECCCChHHCEEEEEEEccCCceEEcCCEEEEEEeC
Confidence 7 8999994 22221 1344333 2246999999999999999999875432 233456666633
No 302
>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Probab=99.72 E-value=3.2e-18 Score=175.83 Aligned_cols=167 Identities=19% Similarity=0.279 Sum_probs=123.3
Q ss_pred ceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeC--CEEee----------cCCCceEEEecC---cEEEEcCCCCCC
Q psy574 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKN--GHPID----------FENSKRLRLVDG---TNLAIQDSRKTD 72 (977)
Q Consensus 8 ~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~--g~~l~----------~~~~~r~~~~~~---g~L~I~~v~~~D 72 (977)
+.. |..+.+.+|++++|.|.+ .+.|.+.|.|+|+ |..+. .....|+.+..+ .+|.|.+++.+|
T Consensus 3 v~q-p~~~~v~~G~~v~L~C~~-~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D 80 (212)
T 1nfd_E 3 LIQ-PSSASVTVGETVKITCSG-DQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPED 80 (212)
T ss_dssp EEC-CSEEEEETTSCCCEEEEE-TTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGG
T ss_pred eEC-CCeEEEeCCCcEEEEEec-CCCCCCeEEEEEECCCCCcEEEEEeccccCCCccccEEEEeeCCEEEEEECcCCccc
Confidence 444 888999999999999998 7788788999984 33321 111356665532 379999999999
Q ss_pred CeEEEEEEEecC-c-eeeeEeEEEEEE----cCCeEEeCCCceEEeCCCeEEEEEEeccc-Cc-eEEEEEECCeeCCCCc
Q psy574 73 DGRYQCVVKNVA-G-TRESTDAVLRVL----VKPYIIRGPKDTTVSASSIIVFECSVGGD-AV-LTVHWKRLGSAMPEDR 144 (977)
Q Consensus 73 ~G~Y~C~a~n~~-g-~~~s~~~~l~V~----~~P~~~~~p~~~~v~~G~~v~l~C~v~g~-p~-~~i~W~k~~~~l~~~~ 144 (977)
+|.|+|.+.|.. + ......+.|.|. .+|.+...+....+.+|+.++|.|.+.|. |. +.|.|+|++..+..+.
T Consensus 81 ~G~Y~C~~~n~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~ 160 (212)
T 1nfd_E 81 EAAYYCLSSYGDNNDLVFGSGTQLTVLRGPKSSPKVTVFPPSPEELRTNKATLVCLVNDFYPGSATVTWKANGATINDGV 160 (212)
T ss_dssp CSEEEEEEEETTTTEEEECCCEEEEEECCCCBCCEEECCCCCHHHHHTTEECCCEEEEEEBSSCCEEEEEETTEEECSSC
T ss_pred CEEEEEEEEcccCcccccCCceEEEEccCCCCCCEEEeeCCchHhccCCceEEEEEEEeeECCccEEEEEECCeEcCCCe
Confidence 999999999732 2 122334567774 45777665555556789999999999876 54 7999999998875432
Q ss_pred eE---------EeccceEEEccCccCCCeEEEEEEEeCCee
Q psy574 145 MS---------VLPSRSLQLSDVRLEDAGEYVCEAENAVGK 176 (977)
Q Consensus 145 ~~---------~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~ 176 (977)
.. ....+.|.|.++..+|+|.|+|.|.|..+.
T Consensus 161 ~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~ 201 (212)
T 1nfd_E 161 KTTKPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGET 201 (212)
T ss_dssp BCCCCBCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTTT
T ss_pred ecCCceecCCCceEEEEEEEchhhcCCCCeEEEEEEeCCce
Confidence 10 111256999999999999999999998754
No 303
>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}
Probab=99.72 E-value=6.5e-17 Score=166.12 Aligned_cols=177 Identities=19% Similarity=0.236 Sum_probs=128.4
Q ss_pred eCCCceEEeCCCeEEEEEEecccCce---EEEEEECCeeCCC-------------------CceEEe------ccceEEE
Q psy574 104 RGPKDTTVSASSIIVFECSVGGDAVL---TVHWKRLGSAMPE-------------------DRMSVL------PSRSLQL 155 (977)
Q Consensus 104 ~~p~~~~v~~G~~v~l~C~v~g~p~~---~i~W~k~~~~l~~-------------------~~~~~~------~~~~L~I 155 (977)
..|..+.+.+|++++|.|.+.+.|.+ .|.|+|++..+.. +++... .+.+|.|
T Consensus 4 ~~p~~vtv~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I 83 (218)
T 4frw_A 4 ETSDVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLL 83 (218)
T ss_dssp ECCSEEEEETTSCEEECCEECCCTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEEE
T ss_pred eCCCeEEEEcCCCEEEEEEEEcCCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEEE
Confidence 45677889999999999999887654 5899998765432 111111 2357999
Q ss_pred ccCccCCCeEEEEEEEeCCee-EEEEEEEEEeeCCe-EEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecC
Q psy574 156 SDVRLEDAGEYVCEAENAVGK-ISASATLTVQMAPI-VRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYP 233 (977)
Q Consensus 156 ~~v~~~D~G~Y~C~a~n~~g~-~~~~~~L~V~~~p~-~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~ 233 (977)
.+++.+|+|.|+|.+.+..+. ......+.+..++. ....+....+..|+.+.|.|.+.+.|.|.|.|++++..+....
T Consensus 84 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~p~p~i~W~~~~~~~~~~~ 163 (218)
T 4frw_A 84 RNAVQADEGEYECRVSTFPAGSFQARLRLRVLVPPLPSLNPGPALEEGQGLTLAASCTAEGSPAPSVTWDTEVKGTTSSR 163 (218)
T ss_dssp SSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCCCEEEECSCEETTCCSEEEEEEEEEEBSCCEEEEEESSCCEEEEE
T ss_pred eeccHHHCCceeEEEEeccCceeeeEEEEEEeeeccceeeeeeeeeeeeccccceeeeccCCcCceEEEEECCcccccCc
Confidence 999999999999999886554 44445555554443 3344555677889999999999999999999999987764211
Q ss_pred CCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEE
Q psy574 234 GDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVS 286 (977)
Q Consensus 234 ~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~ 286 (977)
.+.........+.|.|.++..+|.|.|+ |.|.|..|.....+.+.|.
T Consensus 164 -----~~~~~~~~~~~s~L~i~~~~~~d~g~Yt-C~a~N~~g~~~~~~t~~v~ 210 (218)
T 4frw_A 164 -----SFKHSRSAAVTSEFHLVPSRSMNGQPLT-CVVSHPGLLQDQRITHILH 210 (218)
T ss_dssp -----EEECSSSEEEEEEEEECCCGGGTTCEEE-EEEECTTCSSCEEEEEECC
T ss_pred -----eEecCCcEEEEEEEEEeeCCHHhCeEEE-EEEEeCCCCeEEEEEEEEE
Confidence 1111000011248999999999999999 9999999988776665554
No 304
>3nl4_L Antigen binding fragment, immunoglobulin IGG - LI; FAB, rabbit, conformation-specific, amyloid, immune system; 1.54A {Oryctolagus cuniculus} PDB: 4hbc_L
Probab=99.72 E-value=7.3e-17 Score=165.71 Aligned_cols=165 Identities=14% Similarity=0.229 Sum_probs=125.6
Q ss_pred CeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECC--eeC-------------CCCceEEe---ccceEEEccCccC
Q psy574 100 PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLG--SAM-------------PEDRMSVL---PSRSLQLSDVRLE 161 (977)
Q Consensus 100 P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~--~~l-------------~~~~~~~~---~~~~L~I~~v~~~ 161 (977)
|.+...|..+.+.+|++++|.|.+.+.|.+.+.|+|++ ..+ ..+++.+. .+.+|.|.+++.+
T Consensus 2 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~ 81 (213)
T 3nl4_L 2 VVMTQTPASVSEPVGGTVTIKCQASQSISSYLAWYQQKPGQRPRLLIYETSTLASGVPSRFKGSGSGTDFTLTISDLECA 81 (213)
T ss_dssp CCEEEECSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGG
T ss_pred ccEEeCCCeEEEcCCCCEEEEEEecCCCCceEEEEEECCCCCcEEEEEeCCccCCCCCccEEEecCCCEEEEEECCCChH
Confidence 45566678889999999999999999899999999953 111 02455544 2347999999999
Q ss_pred CCeEEEEEEEeCCe---eEEEEEEEEE---eeCCeEEecCCCcEEeeCCeEEEEEEEec-CCCCeEEEEEcCeeeeecC-
Q psy574 162 DAGEYVCEAENAVG---KISASATLTV---QMAPIVRERPSDLRLEVGRDAVFLCGIEG-SPPPSTFWMLEGNRSLIYP- 233 (977)
Q Consensus 162 D~G~Y~C~a~n~~g---~~~~~~~L~V---~~~p~~~~~p~~~~v~~G~~v~L~C~~~g-~p~~~i~W~~~g~~~~~~~- 233 (977)
|+|.|+|.|.|..+ .....+.|.| ..+|.+...+....+.+|+.++|.|.+.+ .|.+.+.|+++|..+....
T Consensus 82 D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~l~C~~~g~~P~~~v~W~k~g~~~~~~~~ 161 (213)
T 3nl4_L 82 DAATYYCQSTYENPTYVSFGGGTEVGVKGDPVAPTVLIFPPSADLVATGTVTIVCVANKYFPDVTVTWEVDGTTQTTGIE 161 (213)
T ss_dssp GCEEEEEEECCSSTTTCEECCCEEEEEECCCBCCEEEEECCCHHHHTTSEEEEEEEEEEEBSCCEEEEEETTEECCSSEE
T ss_pred HCEEEEEecCCCCceeEEeCCCeEEEEeCCCcCCeEEEeCCchhhccCCcEeEEEEEecccCCcEEEEEeCCccCCCCee
Confidence 99999999998766 3445566777 35677776666666778999999999988 8989999999998763210
Q ss_pred ------CCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEE
Q psy574 234 ------GDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGV 271 (977)
Q Consensus 234 ------~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~ 271 (977)
....+.+... +.|.|..+..+|.|.|+ |.|.
T Consensus 162 ~~~~~~~~~~~~~~~~------s~L~i~~~~~~d~g~Y~-C~a~ 198 (213)
T 3nl4_L 162 NSKTPQNSADCTYNLS------STLTLTSTEYNSHKEYT-CKVT 198 (213)
T ss_dssp EEECCCCTTTCCEEEE------EEEEEEHHHHHTCCEEE-EEEE
T ss_pred cccCcccCCCCeEEEE------EEEEecHHHcCCCCeEE-EEEE
Confidence 0112333332 37999999999999999 9998
No 305
>3s98_A Interferon alpha/beta receptor 1; human, type I interferons, receptor chain, ifnar1, fibronect III, type I interferon receptor chain; HET: NAG; 1.90A {Homo sapiens}
Probab=99.72 E-value=1.7e-17 Score=180.26 Aligned_cols=184 Identities=11% Similarity=0.101 Sum_probs=131.8
Q ss_pred EEEEEeeEeCCCeEEEEEEec--CCCccceEEEEEEecCCCCCceEEEEeecCccceEEEC--CCCCCcEEEEEEEEeec
Q psy574 547 IELTEVKPMTSTSVKLTWEIL--NTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVT--GLAHYSRYEFFLVPFFG 622 (977)
Q Consensus 547 ~~~l~~~~~~~tsv~lsW~~p--~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~--~L~p~t~Y~~~V~a~n~ 622 (977)
|+++++...+ .++.|+|++| .++.+. |.|+|+..+ ...|...........+.+.|+ +|.|++.|.|+|+|.|
T Consensus 7 P~nv~~~~~n-~~~iL~W~pp~~~~~~v~-Y~V~y~~~~-~~~W~~~~~c~~~~~~~c~lt~~~l~~~~~Y~~rV~A~n- 82 (306)
T 3s98_A 7 PQKVEVDIID-DNFILRWNRSDESVGNVT-FSFDYQKTG-MDNWIKLSGCQNITSTKCNFSSLKLNVYEEIKLRIRAEK- 82 (306)
T ss_dssp -CCCEEEEET-TEEEEECC--------CE-EEEEEEESS-CSSCEECTTCSSBSSSEEECCC---CTTSCEEEEEEEEC-
T ss_pred CcEeEEEEEC-CeEEEEEcCCCCCCCCeE-EEEEEEECC-CCCcEECCCccCCCCCEEEccccccCCCCcEEEEEEEEe-
Confidence 3678888775 4578999999 345565 999999875 467865433322344566665 4689999999999999
Q ss_pred ceeCCCCCceEEeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCC-----CCeeeeEEEEEEEecCCcceEEEEecCC
Q psy574 623 SVDGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGT-----HNGVIRTYQIIVGGGNNSALINMTVSAS 697 (977)
Q Consensus 623 ~g~g~~s~~~~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~-----~ng~i~~Y~v~~~~~~~~~~~~~~~~~~ 697 (977)
.|.|+++....|.+.+.++.+||. +.+...+ ++|.|+|+||. .. .+|.+.+|+|.|++.+...... +...
T Consensus 83 ~~~S~~s~~~~f~~~~~~~~~pP~-v~~~~~~-~si~v~w~P~~-~~~~~~~~~g~~l~Y~v~y~~~~~~~~~~--~~~~ 157 (306)
T 3s98_A 83 ENTSSWYEVDSFTPFRKAQIGPPE-VHLEAED-KAIVIHISPGT-KDSVMWALDGLSFTYSLVIWKNSSGVEER--IENI 157 (306)
T ss_dssp SSCEEEEECCCBCHHHHCBCCCCE-EEEEECS-SCEEEEEECC----CCCC-----CCEEEEEEEETTTCCCEE--EEEE
T ss_pred CCcCCCEeeeeEechhhCccCCCe-EEEEEcC-CEEEEEEECCC-CCCcceeccCCcEEEEEEEEECCCCCeEE--Eecc
Confidence 888877777788888777777885 8877644 68999999553 21 2688999999999866332222 2335
Q ss_pred cCeEEecCCCCCceEEEEEEEEc--CCCcCCCCCceEEeecCCC
Q psy574 698 TPTLLLTNLSAGIRYSVSLAATN--RAGTGPYSRPALLSLTSGP 739 (977)
Q Consensus 698 ~~~~~l~~L~p~t~Y~~~V~A~~--~~G~g~~S~~~~~~t~~~~ 739 (977)
.+.++|.+|+|++.|.|+|+|+| .+|.|++|+++.++|....
T Consensus 158 ~~~~~l~~L~p~t~Y~~~V~A~~~~~~g~g~~S~~~~~~T~~~~ 201 (306)
T 3s98_A 158 YSRHKIYKLSPETTYCLKVKAALLTSWKIGVYSPVHCIKTTVEN 201 (306)
T ss_dssp CTEEEECSCCTTCEEEEEEEEEEGGGTEECCCCCCEEEECCSCC
T ss_pred cceEEEccCCCCCeEEEEEEEEEccCCCCCCCCCcEeeEecCCC
Confidence 68999999999999999999999 7899999999999886543
No 306
>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C
Probab=99.72 E-value=6.7e-17 Score=172.07 Aligned_cols=168 Identities=15% Similarity=0.264 Sum_probs=123.2
Q ss_pred cccceecccceEEeCCCcEEEEEECCCCCC------CCeEEEEeC--CEE---ee-------cCCCceEEEec---CcEE
Q psy574 5 REEFRVQPKSQRVAAGDTALLECGPPRGHP------EPTLVWKKN--GHP---ID-------FENSKRLRLVD---GTNL 63 (977)
Q Consensus 5 ~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P------~~~v~W~k~--g~~---l~-------~~~~~r~~~~~---~g~L 63 (977)
.+.+...|..+.+.+|++|+|.|.+ .+.| .+.|.|+|+ |.. +- .....|+.+.. ..+|
T Consensus 5 ~~~v~q~p~~v~v~~G~~v~L~C~~-~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L 83 (264)
T 2gjj_A 5 DIVLTQTPSSLPVSVGEKVTMTCKS-SQTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSGSGTDFTL 83 (264)
T ss_dssp CCCEEEECSEEEEETTCCEEEEEEE-SSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEE
T ss_pred ccceEecCCeEEecCCCcEEEEeEc-CCcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEecCCCEEEE
Confidence 3567778999999999999999998 6666 678999994 321 11 11245776653 2479
Q ss_pred EEcCCCCCCCeEEEEEEEecCceeeeEeEEEEEEcCC------------------e-EEeCCCceEEeCCCeEEEEEEec
Q psy574 64 AIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKP------------------Y-IIRGPKDTTVSASSIIVFECSVG 124 (977)
Q Consensus 64 ~I~~v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V~~~P------------------~-~~~~p~~~~v~~G~~v~l~C~v~ 124 (977)
.|.+++.+|+|.|+|.+.+..+......+.|.|..+| . .+..+....+.+|++++|.|.+.
T Consensus 84 ~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~ 163 (264)
T 2gjj_A 84 TIGSVKAEDLAVYYCQQYSNYPWTFGGGTRLEIKRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPEVVKTGASVKISCKAS 163 (264)
T ss_dssp EESSCCGGGCEEEEEEECSSSSCEECCCEEEEEECC-------------------CCEEEECCCEEECTTCCEEEEEEEE
T ss_pred EECCCCHHHCEEEEEEEecCCccEecCCEEEEEEcCCcccccccccccccccccCcEEEeCCCCEEEcCCCcEEEEEEEe
Confidence 9999999999999999998755333445678887653 1 22333445789999999999998
Q ss_pred ccCc--eEEEEEECC--ee---CC---------------CCceEEe-----ccceEEEccCccCCCeEEEEEEEeC
Q psy574 125 GDAV--LTVHWKRLG--SA---MP---------------EDRMSVL-----PSRSLQLSDVRLEDAGEYVCEAENA 173 (977)
Q Consensus 125 g~p~--~~i~W~k~~--~~---l~---------------~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C~a~n~ 173 (977)
+.+. +.+.|+|+. .. +. .+++.+. ...+|.|.+++.+|+|.|+|.+.|.
T Consensus 164 ~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~ 239 (264)
T 2gjj_A 164 GYSFTGYFINWVKKNSGKSPEWIGHISSSYATSTYNQKFKNKAAFTVDTSSSTAFMQLNSLTSEDSADYYCVRSGN 239 (264)
T ss_dssp SSCGGGSEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred CCccCCeEEEEEEECCCCCcEEEEEEeccCcccccCcccCCceEEEEcCCCCEEEEEECcCCcccCEEEEEEEecC
Confidence 7764 799999973 21 10 2344443 2358999999999999999999985
No 307
>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...
Probab=99.72 E-value=2.5e-17 Score=170.55 Aligned_cols=172 Identities=15% Similarity=0.244 Sum_probs=123.0
Q ss_pred ecccceEEeCCCcEEEEEECCCCCC--CCeEEEEeCC--EE---ee--------------cCCCceEEEec-----CcEE
Q psy574 10 VQPKSQRVAAGDTALLECGPPRGHP--EPTLVWKKNG--HP---ID--------------FENSKRLRLVD-----GTNL 63 (977)
Q Consensus 10 ~~p~~~~v~~G~~v~L~C~~~~g~P--~~~v~W~k~g--~~---l~--------------~~~~~r~~~~~-----~g~L 63 (977)
.+|..+.+.+|++++|.|.+ .+.| .+.|.|+|++ .. +. ....+|+.+.. +++|
T Consensus 5 ~~p~~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L 83 (222)
T 1q9r_B 5 VESGGGLVQSGGSLRLSCAT-SGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYL 83 (222)
T ss_dssp EEECCCEECTTCCEEEEEEE-ESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEE
T ss_pred ecCCceeEcCCCEEEEEEEe-cCccCCCCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECCCCeEEE
Confidence 45778899999999999998 5544 6789999842 21 10 11235777653 2479
Q ss_pred EEcCCCCCCCeEEEEEEEecCce----eeeEeEEEEEEc----CCeEEeCCCceEEeCCCeEEEEEEeccc-Cce-EEEE
Q psy574 64 AIQDSRKTDDGRYQCVVKNVAGT----RESTDAVLRVLV----KPYIIRGPKDTTVSASSIIVFECSVGGD-AVL-TVHW 133 (977)
Q Consensus 64 ~I~~v~~~D~G~Y~C~a~n~~g~----~~s~~~~l~V~~----~P~~~~~p~~~~v~~G~~v~l~C~v~g~-p~~-~i~W 133 (977)
.|.+++.+|+|.|+|.+.+..+. .....+.|.|.. +|.+...+....+.+|+.++|.|.+.|. |.+ .|.|
T Consensus 84 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W 163 (222)
T 1q9r_B 84 QMNTLRAEDSATYYCARDHDGYYERFSYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTW 163 (222)
T ss_dssp EECSCCGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECSSCCBCCEEEEECCCSCCCCSSEEEEEEEEEEEBSSCCEEEE
T ss_pred EECcCCcccCeEEEEEEeccCCcccceEeCCceEEEeccCCCCCCeEEEccccccccCCCcEEEEEEEccEECCCCEEEE
Confidence 99999999999999999986541 122345777764 4555544433346789999999999885 888 9999
Q ss_pred EECCeeCCCCceE-------EeccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEE
Q psy574 134 KRLGSAMPEDRMS-------VLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATL 183 (977)
Q Consensus 134 ~k~~~~l~~~~~~-------~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L 183 (977)
++++..+...... ......|.|.++..+| |.|+|.|.|..+.......|
T Consensus 164 ~~~g~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~y~C~a~n~~~~~~~~~~i 219 (222)
T 1q9r_B 164 NSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKI 219 (222)
T ss_dssp GGGTBCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEEEC
T ss_pred ecCCeEcceEeccccccCCcEEEEEEEEECchhcCC-CeEEEEEEccCCCCcEEEec
Confidence 9998776431111 1122468999999999 99999999998865444333
No 308
>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A
Probab=99.71 E-value=8.5e-17 Score=165.84 Aligned_cols=173 Identities=16% Similarity=0.280 Sum_probs=126.1
Q ss_pred CeEEeCCCceEEeCCCeEEEEEEeccc-CceEEEEEECC--eeC-----------------CCCceEEe---ccceEEEc
Q psy574 100 PYIIRGPKDTTVSASSIIVFECSVGGD-AVLTVHWKRLG--SAM-----------------PEDRMSVL---PSRSLQLS 156 (977)
Q Consensus 100 P~~~~~p~~~~v~~G~~v~l~C~v~g~-p~~~i~W~k~~--~~l-----------------~~~~~~~~---~~~~L~I~ 156 (977)
|.+...| ...+.+|++++|.|.+.+. |.+.+.|+|.. ... ..+|+.+. .+.+|.|.
T Consensus 2 ~~v~~~p-~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~ 80 (218)
T 3s96_B 2 LVLTQSS-SASFSLGASAKLTCTLNSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSSGADRYLSIS 80 (218)
T ss_dssp CSEECCS-EEEEETTSCEEEEEEECGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEEETTEEEEEES
T ss_pred CeEEeCC-cEEECCCCcEEEEEECCCCCCCcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEecCCceEEEEEc
Confidence 3455566 8889999999999999888 89999999942 100 11344433 24579999
Q ss_pred cCccCCCeEEEEEEEeCCe-----eEEEEEEEEEe----eCCeEEecCCCcEEeeCCeEEEEEEEec-CCCC-eEEEEEc
Q psy574 157 DVRLEDAGEYVCEAENAVG-----KISASATLTVQ----MAPIVRERPSDLRLEVGRDAVFLCGIEG-SPPP-STFWMLE 225 (977)
Q Consensus 157 ~v~~~D~G~Y~C~a~n~~g-----~~~~~~~L~V~----~~p~~~~~p~~~~v~~G~~v~L~C~~~g-~p~~-~i~W~~~ 225 (977)
+++.+|+|.|+|.+.|..| .....+.|.|. .+|.+...+....+..|+.++|.|.+.+ .|.+ .+.|+++
T Consensus 81 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~~~~v~L~C~~~g~~p~~~~v~W~k~ 160 (218)
T 3s96_B 81 NIQPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLGQPKSTPTLTVFPPSSEELKENKATLVCLISNFSPSGVTVAWKAN 160 (218)
T ss_dssp SCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEET
T ss_pred cCCcccCEEEEEEEecCCCCceeEEEcCcEEEEEecCCCCCceEEeeCCCcccccCCcEEEEEEECcccCCCeEEEEEEC
Confidence 9999999999999998775 34456788888 5677777666666677899999999988 5666 8999999
Q ss_pred CeeeeecCCC-----ccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEE
Q psy574 226 GNRSLIYPGD-----RVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLAR 280 (977)
Q Consensus 226 g~~~~~~~~~-----~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~ 280 (977)
|..+...... ..+.+.+. +.|.|.....+|.|.|+ |.|.|..+.....
T Consensus 161 g~~l~~~~~~~~~~~~~~~~~~~------s~l~i~~~~~~d~g~Y~-C~a~n~~~~~~~~ 213 (218)
T 3s96_B 161 GTPITQGVDTSNPTKEGNKFMAS------SFLHLTSDQWRSHNSFT-CQVTHEGDTVEKS 213 (218)
T ss_dssp TEEC--------------CEEEE------EEEEEEHHHHHTCSCEE-EEEEETTEEEEEE
T ss_pred CEECcCceecCcccccCCcEEEE------EEEEEeHHHccCCCeEE-EEEEeCCCccccc
Confidence 9876421100 01222222 26889999999999999 9999998755443
No 309
>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}
Probab=99.71 E-value=1.1e-16 Score=173.15 Aligned_cols=182 Identities=16% Similarity=0.243 Sum_probs=128.1
Q ss_pred ceecccceEEeCCCcEEEEEECCCCCC--CCeEEEEeCC--EE---ee------------cCCCceEEEec-----CcEE
Q psy574 8 FRVQPKSQRVAAGDTALLECGPPRGHP--EPTLVWKKNG--HP---ID------------FENSKRLRLVD-----GTNL 63 (977)
Q Consensus 8 ~~~~p~~~~v~~G~~v~L~C~~~~g~P--~~~v~W~k~g--~~---l~------------~~~~~r~~~~~-----~g~L 63 (977)
...+|..+.+.+|++++|.|.+ .+.| .+.|.|+|+. .. +. .....|+.+.. +.+|
T Consensus 25 ~v~~p~~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL 103 (291)
T 2gki_A 25 QLQQSGPELVKPGASVKMSCKA-SGYTFTSYVMHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATLTSDKSSSTAYM 103 (291)
T ss_dssp EEEECCCEEECTTCCEEEEEEE-ESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGBTTBCEEEEGGGTEEEE
T ss_pred EEEcCCcEEecCCCCEEEEEec-cCCcccccEEEEEEECCCCCcEEEEEEecCCCccccCcccCCCEEEEEeCCCCEEEE
Confidence 3456778999999999999998 5665 5789999952 11 10 11134665542 2479
Q ss_pred EEcCCCCCCCeEEEEEEEecC-c--e-eeeEeEEEEEEc----------------CCeEEeCCCceEEeCCCeEEEEEEe
Q psy574 64 AIQDSRKTDDGRYQCVVKNVA-G--T-RESTDAVLRVLV----------------KPYIIRGPKDTTVSASSIIVFECSV 123 (977)
Q Consensus 64 ~I~~v~~~D~G~Y~C~a~n~~-g--~-~~s~~~~l~V~~----------------~P~~~~~p~~~~v~~G~~v~l~C~v 123 (977)
.|.+++.+|+|.|+|.+.+.. | . .....+.|.|.. ++.+...|....+.+|++++|.|.+
T Consensus 104 ~I~~v~~~DsG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~ 183 (291)
T 2gki_A 104 ELSSLTSEDSAVYYCARGAYKRGYAMDYWGQGTSVTVSSRGGGGSGGGGSGGGGSDLVMSQSPSSLAVSAGEKVTMSCKS 183 (291)
T ss_dssp EECSCCGGGCEEEEEEEECGGGTTCEEEECCCEEEEECC----------------CCCEECSCSEEEEETTSCEEEEEEE
T ss_pred EECcCCHHHCEEEEEEEeccccccccceeCCCcEEEEecCCccccccccCCCCCccceEEcCCCEEEEcCCCcEEEEEEc
Confidence 999999999999999999874 2 1 112345778776 3445666778889999999999999
Q ss_pred cccCce------EEEEEECC--eeCC-------------CCceEEe---ccceEEEccCccCCCeEEEEEEEeCCee-EE
Q psy574 124 GGDAVL------TVHWKRLG--SAMP-------------EDRMSVL---PSRSLQLSDVRLEDAGEYVCEAENAVGK-IS 178 (977)
Q Consensus 124 ~g~p~~------~i~W~k~~--~~l~-------------~~~~~~~---~~~~L~I~~v~~~D~G~Y~C~a~n~~g~-~~ 178 (977)
.+.+.+ .+.|+|+. ..+. .+++... ...+|.|.+++.+|+|.|+|.|.|.... ..
T Consensus 184 ~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg 263 (291)
T 2gki_A 184 SQSLFNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYCKQSYYHMYTFG 263 (291)
T ss_dssp SSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEEEEC
T ss_pred CCccccccccceeEEEEEECCCCCcEEEEEEcccCCCCcCCCEEEEecCCEEEEEECCCCHHHCEEEEEEEccCCceEEc
Confidence 888776 89999973 2110 2355443 2247999999999999999999986542 22
Q ss_pred EEEEEEEeeCCe
Q psy574 179 ASATLTVQMAPI 190 (977)
Q Consensus 179 ~~~~L~V~~~p~ 190 (977)
....|.|...+.
T Consensus 264 ~gt~l~v~~~~~ 275 (291)
T 2gki_A 264 SGTKLEIKHHHH 275 (291)
T ss_dssp CCEEEEEECC--
T ss_pred CCEEEEEEeeEc
Confidence 345666665444
No 310
>2ed9_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=3.8e-17 Score=151.91 Aligned_cols=121 Identities=28% Similarity=0.319 Sum_probs=107.3
Q ss_pred EEEEeecceeCCCCCceEEeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCcceEEEEec
Q psy574 616 FLVPFFGSVDGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVS 695 (977)
Q Consensus 616 ~V~a~n~~g~g~~s~~~~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~~~~~~~~~ 695 (977)
+|+|+|..|.|+.|..+.++|.+++|+.+|.++++...+.++|.|+|++|.....+|.|.+|+|+|+..+..... ..+.
T Consensus 3 ~V~A~n~~G~g~~s~~~~~~T~~~~P~~~P~~l~~~~~~~~sv~l~W~~p~~~~~~g~i~~Y~v~~~~~~~~~~~-~~~~ 81 (124)
T 2ed9_A 3 SGSSGNRYGPGVSTDDITVVTLSDVPSAPPQNVSLEVVNSRSIKVSWLPPPSGTQNGFITGYKIRHRKTTRRGEM-ETLE 81 (124)
T ss_dssp SCCCCCCCCCCCCCCCCCCCCCCCCCSSCCBSCCEEEEETTEEEEECBCCCTTTCCSCCCEEEEEEEESSSSCCE-EEEC
T ss_pred eEEEEeCCccCCCCCCEEEEcCCCCCCCCCeeeEEEEcCCCEEEEEEECcCCcCCCcEEeEEEEEEEECCCCcce-EEec
Confidence 478999999999999999999999999899999999999999999999996444899999999999986533332 2367
Q ss_pred CCcCeEEecCCCCCceEEEEEEEEcCCCcCCCCCceEEeecC
Q psy574 696 ASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTS 737 (977)
Q Consensus 696 ~~~~~~~l~~L~p~t~Y~~~V~A~~~~G~g~~S~~~~~~t~~ 737 (977)
...++++|.+|+|++.|.|+|+|+|.+|.|++|+++.++|.+
T Consensus 82 ~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~e 123 (124)
T 2ed9_A 82 PNNLWYLFTGLEKGSQYSFQVSAMTVNGTGPPSNWYTAETPE 123 (124)
T ss_dssp SSCSEEEEECCCSSCEEEECEEEECSSCBCCCCCCEEEECCC
T ss_pred CCcCEEEEcCCCCCCEEEEEEEEEcCCccCCCCCCEEEECCC
Confidence 788999999999999999999999999999999999998865
No 311
>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*
Probab=99.71 E-value=4.6e-17 Score=171.69 Aligned_cols=173 Identities=14% Similarity=0.184 Sum_probs=118.4
Q ss_pred ecccceEEeCCCcEEEEEECCCCCCCCe-----EEEEeCCEEee------c---------CCCceEEE----ecCcEEEE
Q psy574 10 VQPKSQRVAAGDTALLECGPPRGHPEPT-----LVWKKNGHPID------F---------ENSKRLRL----VDGTNLAI 65 (977)
Q Consensus 10 ~~p~~~~v~~G~~v~L~C~~~~g~P~~~-----v~W~k~g~~l~------~---------~~~~r~~~----~~~g~L~I 65 (977)
..|..+.+.+|++++|.|.+ .+.|.+. |.|+|++.... . ....++.. ..+.+|.|
T Consensus 8 ~~p~~~~v~~G~~v~L~C~~-~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I 86 (248)
T 3pv7_A 8 MAGGTQITPLNDNVTIFCNI-FYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRL 86 (248)
T ss_dssp STTSEEEEETTSCEEECCEE-EESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBCCEEE
T ss_pred eCCCCeEEeCCCCEEEeeEE-ecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCcEEEEe
Confidence 35667899999999999998 6666654 99999632210 0 00111110 01235999
Q ss_pred cCCCCCCCeEEEEEEEecCceeeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEecc-cCce-EEEEEECCeeCCCC
Q psy574 66 QDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGG-DAVL-TVHWKRLGSAMPED 143 (977)
Q Consensus 66 ~~v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~g-~p~~-~i~W~k~~~~l~~~ 143 (977)
.+++.+|+|.|+|.+.+..+. ....+.|.|..+|.+...+.. .+..|+.+.|.|.+.| .|.+ .|.|+|++..+...
T Consensus 87 ~~v~~~D~G~Y~C~~~~~~~~-~~~~~~L~V~~~P~v~~~~~~-~~~~~~~~~L~C~~~g~~P~pi~v~W~k~g~~l~~~ 164 (248)
T 3pv7_A 87 PGIQLEEAGEYRCEVVVTPLK-AQGTVQLEVVASPASRLLLDQ-VGMKENEDKYMCESSGFYPEAINITWEKQTQKFPHP 164 (248)
T ss_dssp SSCCGGGCEEEEEEEEETTEE-EEEEEEEEEEBCCEEEEECC---------CEEEEEEEEEBSSCCEEEEEEECSSSCSC
T ss_pred CCCCHHHCeEEEEEEEeCCcc-ceeEEEEEEecCCceEEecCC-ccccCCCcEEEEEEccEECCCeEEEEEECCccCCCc
Confidence 999999999999999998765 446789999999988776653 4556788889999988 7888 99999999755422
Q ss_pred c----------eEE------eccceEEEccCccCCCeEEEEEEEeCCee--EEEEEEEEE
Q psy574 144 R----------MSV------LPSRSLQLSDVRLEDAGEYVCEAENAVGK--ISASATLTV 185 (977)
Q Consensus 144 ~----------~~~------~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~--~~~~~~L~V 185 (977)
. ... .....|.|.....+|.|.|+|.|.|..+. ....+.|.|
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~n~~~~~~~~~~v~l~V 224 (248)
T 3pv7_A 165 IEISEDVITGPTIKNMDGTFNVTSCLKLNSSQEDPGTVYQCVVRHASLHTPLRSNFTLTA 224 (248)
T ss_dssp EEECTTEEEEEEEECTTSCEEEEEEEECC--CCCTTCEEEEEEECTTCSSCEEEEECC--
T ss_pred cccccceeecccEECCCCCEEEEEEEEEcCccccCCCEEEEEEECCCCCCCcEEEEEEEE
Confidence 0 111 11246888889999999999999998875 667777777
No 312
>1cd9_B G-CSF-R, protein (G-CSF receptor); class1 cytokine, hematopoietic receptor, signal transduction cytokine; HET: NAG; 2.80A {Mus musculus} SCOP: b.1.2.1 b.1.2.1 PDB: 1pgr_B 1cto_A 1gcf_A
Probab=99.71 E-value=3.4e-16 Score=161.05 Aligned_cols=198 Identities=15% Similarity=0.135 Sum_probs=136.3
Q ss_pred CCCCCCCCCeEEee-CCCceEEEEEcCCCCCCcccceEEEEEeecCCCCCCCCCCCCcccEEEece--ecCcCeEEEEcc
Q psy574 396 TYPGPPTKPTLVNQ-TANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVAT--NVPSPILTVTNL 472 (977)
Q Consensus 396 ~~p~~P~~~~v~~~-~~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~--~~~~~~~~i~~L 472 (977)
.+|++|.++.+... ..+++.|+|.++.+ ++. ...|.|+|+..... |.. ....|..+.. ....+.+.+.+|
T Consensus 3 ~pP~~P~~l~c~~~~~~~~~~~~W~p~~~-~~~-~~~Y~l~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~~L 75 (215)
T 1cd9_B 3 YPPASPSNLSCLMHLTTNSLVCQWEPGPE-THL-PTSFILKSFRSRAD---CQY--QGDTIPDCVAKKRQNNCSIPRKNL 75 (215)
T ss_dssp CCCCCCEEEEEEEETTTTEEEEEEECCSC-CSS-CCEEEEEEEECCGG---GCS--CCCEEEEEECCTTCCEEEEEGGGC
T ss_pred CCCCCCeeeeeecCCCcccEEEEecCCCC-CCC-ceeEEEEEEecCCc---ccc--cccccccCCCCCCCcEEEECCccc
Confidence 46899999998877 67899999999876 333 46799999864321 110 1123444332 223456677899
Q ss_pred CCCCeEEEEEEEEcCCCCCCCCCCCceEEeeccccccccccCCcceeecCCCCCCCcchHHHHhhcccccCCceEEEEEe
Q psy574 473 TVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEV 552 (977)
Q Consensus 473 ~p~t~Y~~~V~a~n~~G~s~~S~~s~~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~g~~~~~~~~~l~~~~~~~~~~l~~ 552 (977)
.+++.|.|+|.|.|..|.+... .+.+. ......|. | |.++.+
T Consensus 76 ~~~~~Y~~~V~A~N~~G~~~s~----~~~~~-~~~~v~p~---------p------------------------P~~~~~ 117 (215)
T 1cd9_B 76 LLYQYMAIWVQAENMLGSSESP----KLCLD-PMDVVKLE---------P------------------------PMLQAL 117 (215)
T ss_dssp CTTSCEEEEEEEEETTEEEECC----CEEEC-GGGGBCCC---------C------------------------CEEEEC
T ss_pred ccceEEEEEEEEECCCCCccCc----cEEEc-hHHceEeC---------C------------------------CcEEEE
Confidence 9999999999999998875322 22221 11101122 2 356777
Q ss_pred eEe------CCCeEEEEEEec-CCCc-cceEEEEEE-ecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeecc
Q psy574 553 KPM------TSTSVKLTWEIL-NTDY-IEGVYIYSR-GLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGS 623 (977)
Q Consensus 553 ~~~------~~tsv~lsW~~p-~~~~-i~~Y~v~y~-~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~ 623 (977)
... +.++|.|+|++| .++. +.+|.|+|+ ..+ ...|....... ...+.+.|.+|+|++.|.|+|+|.+..
T Consensus 118 ~~~~~~~~~~~~~~~l~W~~p~~~~~~~l~Y~v~y~~~~~-~~~w~~~~~~~-~~~~~~~l~~L~p~t~Y~~~Vra~~~~ 195 (215)
T 1cd9_B 118 DIGPDVVSHQPGCLWLSWKPWKPSEYMEQECELRYQPQLK-GANWTLVFHLP-SSKDQFELCGLHQAPVYTLQMRCIRSS 195 (215)
T ss_dssp CC-------CCSCEEEEEECCGGGTTSCEEEEEEEEESST-TCCCEEEEEEE-SCEEEEEECCCCSCSCEEEEEEEEESS
T ss_pred EEeccccCCCCCeEEEEEeCCCCCCeEEEEEEEEEccCCC-CCCcEEEeccc-CcceEEEEcCCCCCCEEEEEEEeeECC
Confidence 776 688999999999 3333 479999999 554 56787654333 456789999999999999999999987
Q ss_pred eeC---CCCCceEEeccCCC
Q psy574 624 VDG---KPSNLRAVRTLECE 640 (977)
Q Consensus 624 g~g---~~s~~~~~~T~~~~ 640 (977)
|.| .+|..+.++|.+++
T Consensus 196 g~G~wS~wS~~~~~~T~e~a 215 (215)
T 1cd9_B 196 LPGFWSPWSPGLQLRPTMKA 215 (215)
T ss_dssp SCCCCCCCCCCEEECCCC--
T ss_pred CCCCCcCCCCccceecCCCC
Confidence 765 56778899998753
No 313
>3n06_B PRL-R, prolactin receptor; PH dependence, hematopoietic cytokine, hormone-hormone recep complex; 2.00A {Homo sapiens} PDB: 3mzg_B 3n0p_B 3ncb_B 1bp3_B 3d48_R 3nce_B 3ncc_B 3ncf_B 3ew3_B 3npz_B 1f6f_B 2lfg_A
Probab=99.71 E-value=3.4e-16 Score=160.34 Aligned_cols=190 Identities=13% Similarity=0.004 Sum_probs=138.9
Q ss_pred CCCCCCCCCeEEeeCCCceEEEEEcCCCCCCcccceEEEEEeecCCCCCCCCCCCCcccEEEece--ecCcCeE--EEEc
Q psy574 396 TYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVAT--NVPSPIL--TVTN 471 (977)
Q Consensus 396 ~~p~~P~~~~v~~~~~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~--~~~~~~~--~i~~ 471 (977)
.+|++|.++.+...+..++.|+|.++.+ .+ ....|.|+|+..... .|..+.. ......+ .+.+
T Consensus 2 ~pP~~P~nl~c~~~~~~~~~c~W~p~~~-~~-~~~~Y~l~y~~~~~~-----------~~~~c~~~~~~~~~~c~~~~~~ 68 (210)
T 3n06_B 2 LPPGKPEIFKCRSPNKETFTCWWRPGTD-GG-LPTNYSLTYHREGET-----------LMHECPDYITGGPNSCHFGKQY 68 (210)
T ss_dssp CCCCCCEEEEEEBSSSSCEEEEEECCSS-SC-CCSEEEEEEEETTCC-----------CCEECSCSSTTCTTEEEECGGG
T ss_pred CCCCCCeEeEEEeCCCCeEEEEECCCCC-CC-CCceEEEEEEECCCC-----------ccccCCCCCCCCCeEEEeCCCC
Confidence 4689999999999999999999999886 33 357999999875432 5665531 1122334 4567
Q ss_pred cCCCCeEEEEEEEEcCCCCCCCCCCCceEEeeccccccccccCCcceeecCCCCCCCcchHHHHhhcccccCCceEEEEE
Q psy574 472 LTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTE 551 (977)
Q Consensus 472 L~p~t~Y~~~V~a~n~~G~s~~S~~s~~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~g~~~~~~~~~l~~~~~~~~~~l~ 551 (977)
|.+++.|.|+|+|.|..|.+.++. +.... .....| .++.++.
T Consensus 69 l~~~~~Y~~~V~A~N~~G~~~s~~----~~~~~-~~~v~p---------------------------------~pP~~l~ 110 (210)
T 3n06_B 69 TSMWRTYIMMVNATNQMGSSFSDE----LYVDV-TYIVQP---------------------------------DPPLELA 110 (210)
T ss_dssp CCSSSCEEEEEEEEETTEEEECCC----EEECG-GGCBCC---------------------------------CCCEEEE
T ss_pred cccceeEEEEEEEEcCCCCeeCCc----EEEch-hheEec---------------------------------CCCceEE
Confidence 999999999999999999874321 12211 110111 2236777
Q ss_pred eeEeC----CCeEEEEEEecC--C---C-ccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEee
Q psy574 552 VKPMT----STSVKLTWEILN--T---D-YIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFF 621 (977)
Q Consensus 552 ~~~~~----~tsv~lsW~~p~--~---~-~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n 621 (977)
+...+ .+++.|+|++|. . + .+.+|.|+|+..+. ..|.... ....+++.|.+|+|++.|.|+|+|.+
T Consensus 111 ~~~~~~~~~~~~l~l~W~~p~~~~~~~g~~~~~Y~v~y~~~~~-~~~~~~~---~~~~~~~~l~~L~p~t~Y~v~Vra~~ 186 (210)
T 3n06_B 111 VEVKQPEDRKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKA-AEWEIHF---AGQQTEFKILSLHPGQKYLVQVRCKP 186 (210)
T ss_dssp EEEECCSSSCCEEEEEEECCTTCCCTTSSCCEEEEEEEECTTC-SSCEEEE---EETCSEEEECCCCTTCEEEEEEEEEE
T ss_pred EEEecCcCCCceEEEEcCCCCCccccCCeEEEEEEEEEecCCC-CCCEEEe---ccCceEEEEeccCCCCEEEEEEEEec
Confidence 77654 689999999992 1 2 36899999998774 5676532 24567999999999999999999999
Q ss_pred ccee-CCCCCceEEeccCCC
Q psy574 622 GSVD-GKPSNLRAVRTLECE 640 (977)
Q Consensus 622 ~~g~-g~~s~~~~~~T~~~~ 640 (977)
..|. |.+|..+.++|.++.
T Consensus 187 ~~g~wS~wS~~~~~~Tp~~~ 206 (210)
T 3n06_B 187 DHGYWSAWSPATFIQIPSDF 206 (210)
T ss_dssp SSSCCCCCCCCEEEECCTTC
T ss_pred CCCcccCCCCceeEECcCCC
Confidence 8886 889999999998764
No 314
>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Probab=99.71 E-value=1e-17 Score=174.97 Aligned_cols=171 Identities=17% Similarity=0.247 Sum_probs=121.0
Q ss_pred ceecccceEEeCCCcEEEEEECCCC-CCCC-eEEEEeCC--EEe---e-------cCCCceEEEec---CcEEEEcCCCC
Q psy574 8 FRVQPKSQRVAAGDTALLECGPPRG-HPEP-TLVWKKNG--HPI---D-------FENSKRLRLVD---GTNLAIQDSRK 70 (977)
Q Consensus 8 ~~~~p~~~~v~~G~~v~L~C~~~~g-~P~~-~v~W~k~g--~~l---~-------~~~~~r~~~~~---~g~L~I~~v~~ 70 (977)
+.. |..+.+.+|++++|.|.+ .+ .+.+ .|.|+|++ ..+ . .....|+.+.. +.+|.|.+++.
T Consensus 23 v~~-p~~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~ 100 (234)
T 2j6e_L 23 LTQ-PPSASGTPGQRVTISCSG-SSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSKSGTSASLAISGLRS 100 (234)
T ss_dssp CBC-CSCCCBCTTCEEEEEEEC-CTTTTTTSCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEEETTEEEEEEESCCS
T ss_pred EeC-CCcEEeeCCCcEEEEEEe-cCCCCCCCeEEEEEecCCCCcEEEEECccccCCCccccEEEEecCCeEEEEECCCCH
Confidence 344 888999999999999998 44 3444 79999963 221 0 11235666553 34799999999
Q ss_pred CCCeEEEEEEEecCc--eeeeEeEEEEEE----cCCeEEeCCCceEEeCCCeEEEEEEeccc-Cc-eEEEEEECCeeCCC
Q psy574 71 TDDGRYQCVVKNVAG--TRESTDAVLRVL----VKPYIIRGPKDTTVSASSIIVFECSVGGD-AV-LTVHWKRLGSAMPE 142 (977)
Q Consensus 71 ~D~G~Y~C~a~n~~g--~~~s~~~~l~V~----~~P~~~~~p~~~~v~~G~~v~l~C~v~g~-p~-~~i~W~k~~~~l~~ 142 (977)
+|+|.|+|.+.|..+ ......+.|.|. .+|.+...+....+.+|++++|.|.+.|. |. +.|.|+|++..+..
T Consensus 101 ~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~ 180 (234)
T 2j6e_L 101 EDEADYYCATWDDSLSAVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFFPGAVTVAWKADGAPVKA 180 (234)
T ss_dssp TTCSEEEEEEEETTTTEEEECCCBCCCBCCCCCCCCCCCEECCCHHHHTTSCCCEEECCCBCSSCCCEEEEEETTEECCS
T ss_pred HHCEEEEEEEEcCCcceeEecCCEEEEEecCCCCCCcccccCCChhHhcCCceEEEEEEEEEcCCceEEEEEECCEECCC
Confidence 999999999999877 223334566773 34555544433334568999999999875 44 48999999998865
Q ss_pred CceEE----------eccceEEEccCccCCCeEEEEEEEeCCeeEEEE
Q psy574 143 DRMSV----------LPSRSLQLSDVRLEDAGEYVCEAENAVGKISAS 180 (977)
Q Consensus 143 ~~~~~----------~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~ 180 (977)
+.... .....|.|.++..+|+|.|+|.|.|.....++.
T Consensus 181 ~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~ 228 (234)
T 2j6e_L 181 GVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKT 228 (234)
T ss_dssp SEEECCCCCCTTSCCBCCEEECCCGGGTTTSCCEEEEEEBTTBCCCEE
T ss_pred CccccCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEeCCCceEEe
Confidence 42110 112468999999999999999999987654433
No 315
>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}
Probab=99.71 E-value=7.4e-17 Score=172.27 Aligned_cols=167 Identities=19% Similarity=0.279 Sum_probs=119.1
Q ss_pred ccceecccceEEeCCCcEEEEEECCCCCC-----CCeEEEEeCC--E---Eee-------cCCCceEEEec---CcEEEE
Q psy574 6 EEFRVQPKSQRVAAGDTALLECGPPRGHP-----EPTLVWKKNG--H---PID-------FENSKRLRLVD---GTNLAI 65 (977)
Q Consensus 6 ~~~~~~p~~~~v~~G~~v~L~C~~~~g~P-----~~~v~W~k~g--~---~l~-------~~~~~r~~~~~---~g~L~I 65 (977)
..+...|..+.+.+|++++|.|.+ .+.| .+.|.|+|++ . .+. .....|+.+.. +.+|.|
T Consensus 16 ~~v~~~p~~~~v~~G~~v~L~C~~-~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I 94 (268)
T 1x9q_A 16 VVMTQTPLSLPVSLGDQASISCRS-SQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSGSGTDFTLKI 94 (268)
T ss_dssp CCEEEECSEECCCTTCCEEEEEEE-SSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEE
T ss_pred ceEEeeCCeEEecCCCCEEEEeEe-cCCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEcCCCEEEEEE
Confidence 456677888999999999999998 5665 5899999853 2 121 11245776653 247999
Q ss_pred cCCCCCCCeEEEEEEEecCceeeeEeEEEEEEcCCe-----------------------EEeCCCceEEeCCCeEEEEEE
Q psy574 66 QDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPY-----------------------IIRGPKDTTVSASSIIVFECS 122 (977)
Q Consensus 66 ~~v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V~~~P~-----------------------~~~~p~~~~v~~G~~v~l~C~ 122 (977)
.+++.+|+|.|+|.+.|..+......+.|.|..++. .+..|....+.+|++++|.|.
T Consensus 95 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~p~~pp~~~~~~~~~~~~~~v~~~~~~~~~v~~G~~v~L~C~ 174 (268)
T 1x9q_A 95 NRVEAEDLGVYFCSQSTHVPWTFGGGTKLEIKSSADDAKKDAAKKDDAKKDDAKKDGGVKLDETGGGLVQPGGAMKLSCV 174 (268)
T ss_dssp SSCCGGGCEEEEEEECSSSSCEECCCEEEC------------------------CGGGCEEEEECCEEECTTCCEEEEEE
T ss_pred CCCChhHCEEEEEEEecCCCceEcCCEEEEEccCccCCCccccccccccccccccccceEEECCCceEecCCCcEEEEEE
Confidence 999999999999999987543333445677764321 233455678999999999999
Q ss_pred ecccCc--eEEEEEECC--eeC--------------------CCCceEEec-----cceEEEccCccCCCeEEEEEEEeC
Q psy574 123 VGGDAV--LTVHWKRLG--SAM--------------------PEDRMSVLP-----SRSLQLSDVRLEDAGEYVCEAENA 173 (977)
Q Consensus 123 v~g~p~--~~i~W~k~~--~~l--------------------~~~~~~~~~-----~~~L~I~~v~~~D~G~Y~C~a~n~ 173 (977)
+.+.+. +.+.|+|+. ..+ ..+++.+.. ..+|.|.+++.+|+|.|+|.+.+.
T Consensus 175 ~~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~ 254 (268)
T 1x9q_A 175 TSGFTFGHYWMNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTISRDDSKSSVYLQMNNLRVEDTGIYYCTGASY 254 (268)
T ss_dssp EESSCGGGCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred ecCccccccEEEEEEeCCCCCcEEEEEEcccccccccccCCccCCeEEEEEeCCCCEEEEEECCCCHHHCEEEEEEEccC
Confidence 987653 789999862 211 134555542 257999999999999999999875
No 316
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4
Probab=99.71 E-value=2.8e-17 Score=175.22 Aligned_cols=257 Identities=14% Similarity=0.186 Sum_probs=112.0
Q ss_pred ceecccceEEeCCCcEEEEEECCCCCCCC-eEEEEeC-CEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEecCc
Q psy574 8 FRVQPKSQRVAAGDTALLECGPPRGHPEP-TLVWKKN-GHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAG 85 (977)
Q Consensus 8 ~~~~p~~~~v~~G~~v~L~C~~~~g~P~~-~v~W~k~-g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~~g 85 (977)
+++.|.++.|.+|++++|.|.. .. +.+ .+.|... ++......+. ....|.|.+++.+ |.|+|.+.. .|
T Consensus 2 ~~v~P~~~~V~~G~sv~l~Cs~-~c-~~p~~~~~~t~l~~~~~~~~g~-----~~~~~~l~~v~~~--~~y~C~~~~-~~ 71 (291)
T 1mq8_A 2 TSVSPSKVILPRGGSVLVTCST-SC-DQPKLLGIETPLPKKELLLPGN-----NRKVYELSNVQED--SQPMCYSNC-PD 71 (291)
T ss_dssp EEEECSEEEECTTCEEEEEEEE-CC-SSCSEEEEECSSCCCCCCCSCS-----SEEEEEEESCCSC--CCCEEEEEC-SS
T ss_pred eEEeCCccEEcCCCeEEEEEeC-CC-CCCccceEEecCCCcccccCCC-----ceEEEEEEecccC--CeEEEEEEc-CC
Confidence 5788999999999999999998 33 333 4888631 1111000000 0124788888853 469999964 44
Q ss_pred eeeeEeEEEEEEcCCeEE-eCCCceEEeCCCeEEEEEEecc-cCce--EEEEEECCeeCCCCceEE-eccceEEEccCcc
Q psy574 86 TRESTDAVLRVLVKPYII-RGPKDTTVSASSIIVFECSVGG-DAVL--TVHWKRLGSAMPEDRMSV-LPSRSLQLSDVRL 160 (977)
Q Consensus 86 ~~~s~~~~l~V~~~P~~~-~~p~~~~v~~G~~v~l~C~v~g-~p~~--~i~W~k~~~~l~~~~~~~-~~~~~L~I~~v~~ 160 (977)
......+.|.|+.+|... ..+....+.+|+.++|.|.+.| .|.. .|+|+|++..+....... ....+|.+.....
T Consensus 72 ~~~~~~v~l~V~~~P~~v~I~~~~~~~~~G~~~~LtC~v~g~~P~~~l~itW~kg~~~l~~~~~~~~~~~~~l~~~~~~~ 151 (291)
T 1mq8_A 72 GQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRD 151 (291)
T ss_dssp CEEEEECEEEECBCCSCCCBCCCCSBCCSSCCCEEEEEECCCBSTTTEEEEEESSSSEEEEEECCBTTEEEEEECCCSSS
T ss_pred ccEEEEEEEEEecCCCCCEEecCCccccCCCCEEEEEEecCccCCCCcEEEEEECCEEeecccCCCCCceEEEEeeeeec
Confidence 556677789999887533 3344456889999999999965 4543 699999998775321000 0123566666667
Q ss_pred CCCeEEEEEEEeCCe--------eEEEEEEEEEeeCCeEEec-CCCcEEeeCCeEEEEEEEecCCCC---eEEEEEcCee
Q psy574 161 EDAGEYVCEAENAVG--------KISASATLTVQMAPIVRER-PSDLRLEVGRDAVFLCGIEGSPPP---STFWMLEGNR 228 (977)
Q Consensus 161 ~D~G~Y~C~a~n~~g--------~~~~~~~L~V~~~p~~~~~-p~~~~v~~G~~v~L~C~~~g~p~~---~i~W~~~g~~ 228 (977)
+|.+.|+|+|.|..+ ..++...|.|+.+|..... .....+.+|+.++|.|.+.|++++ .+.|+++|..
T Consensus 152 D~g~~~~C~A~~~l~~~g~~l~~~~s~~~~L~V~~~P~~~~~~~~p~~l~eG~~v~l~C~~~g~~P~~~~~v~w~~~g~~ 231 (291)
T 1mq8_A 152 HHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQR 231 (291)
T ss_dssp CSSCEEEEEEEEECGGGTSCEEEECCCCEECBC-----------------------------------------------
T ss_pred cCCceEEEEEEecCCccCCccccccccceEEEEEecCCCCceecCCcCccCCCeEEEEEEcCCCCCCcccEEEEEECCEe
Confidence 777799999998644 2456678999877533111 112368899999999999998665 5889999887
Q ss_pred eeecCCCccccEEEEEccCCceEEEEeec---cc--CCCCeEEEEEEEcCCCceeEEEEEEEEC
Q psy574 229 SLIYPGDRVDNIQAEITSDGMNLLKIQNV---SR--TAAPLIILCLGVNAAGSDLARASLTVSG 287 (977)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~g~s~L~I~~v---~~--~d~G~Y~~C~a~n~~g~~~~~~~l~V~~ 287 (977)
+.... ... ++ .+.+... .+ ++.+.|+ |.|.+..........|.|..
T Consensus 232 l~~~~-------~~~---g~--~~~~~~~~~~~~~~~~~~~~~-C~~~~~~~~~~~~~~l~v~~ 282 (291)
T 1mq8_A 232 LNPTV-------TYG---ND--SFSAKASVSVTAEDEGTQRLT-CAVILGNQSQETLQTVTIYS 282 (291)
T ss_dssp ----------------------------------------------------------------
T ss_pred cCcee-------eec---CC--eEEEEEecceeEcCCCCEEEE-EEEEeCCcceEEEEEEEEEc
Confidence 63210 000 11 3333332 23 3467777 88887555555666677765
No 317
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}
Probab=99.70 E-value=3.1e-16 Score=158.27 Aligned_cols=156 Identities=19% Similarity=0.214 Sum_probs=117.8
Q ss_pred CCCceEEeCCCeEEEEEEecc-cCceEEEEEECCeeCC----C---------------CceEEeccceEEEccCccCCCe
Q psy574 105 GPKDTTVSASSIIVFECSVGG-DAVLTVHWKRLGSAMP----E---------------DRMSVLPSRSLQLSDVRLEDAG 164 (977)
Q Consensus 105 ~p~~~~v~~G~~v~l~C~v~g-~p~~~i~W~k~~~~l~----~---------------~~~~~~~~~~L~I~~v~~~D~G 164 (977)
.|..+.+.+|++++|.|.+.+ .+.+.|.|+|++..+. . +|..+..+++|.|.+++.+|+|
T Consensus 4 ~p~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G 83 (193)
T 2if7_A 4 TPLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQLSNLKMEDTG 83 (193)
T ss_dssp CCEEEEEETTSCEEECCCCCCCSCCCEEEEEETTEEEEEEECCSSSCCEEEECCHHHHTTEEECTTCCEEECSCCGGGCE
T ss_pred CCeEEEEEecCeEEEeccCCCcccccEEEEEECCEEEEEEecccCCCCceeecCccccccEEECCCeEEEECCCCcccCc
Confidence 466778999999999999965 5567999999875431 0 2445556788999999999999
Q ss_pred EEEEEEEeCCeeEEEEEEEEEeeCCe---EEecCCCcEEeeCC-eEEEEEEEecC-CCCeEEEEEcCeeeeecCCCcccc
Q psy574 165 EYVCEAENAVGKISASATLTVQMAPI---VRERPSDLRLEVGR-DAVFLCGIEGS-PPPSTFWMLEGNRSLIYPGDRVDN 239 (977)
Q Consensus 165 ~Y~C~a~n~~g~~~~~~~L~V~~~p~---~~~~p~~~~v~~G~-~v~L~C~~~g~-p~~~i~W~~~g~~~~~~~~~~~~~ 239 (977)
.|+|.+.+..+.....+.|.|..++. +...+ .....|. .++|.|.+.+. |.+.+.|+++|..+..
T Consensus 84 ~Y~C~~~~~~~~~~~~~~L~V~~~~~~p~i~~~~--~~~~~g~~~v~L~C~~~g~~p~p~i~W~~~g~~l~~-------- 153 (193)
T 2if7_A 84 SYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHS--QLFQNMTCELHLTCSVEDADDNVSFRWEALGNTLSS-------- 153 (193)
T ss_dssp EEEEEEECSSCEEEEEEEEEEECCCEEEEEEECC--C---CSSEEEEEEEEEESCCTTCEEEEEETTEEEES--------
T ss_pred eEEEEEEecCCCeEEEEEEEEEccCCCCeEecCc--eeecCCCceEEEEEEEecCCCceEEEEEeCCEEcCC--------
Confidence 99999999988777788999986543 33322 2334565 89999999985 5789999999875420
Q ss_pred EEEEEccCCceEEEEeecccC-CCCeEEEEEEEcCCCceeEE
Q psy574 240 IQAEITSDGMNLLKIQNVSRT-AAPLIILCLGVNAAGSDLAR 280 (977)
Q Consensus 240 ~~~~~~~~g~s~L~I~~v~~~-d~G~Y~~C~a~n~~g~~~~~ 280 (977)
.+ .|.|.....+ |.|.|+ |.|.|..|..+..
T Consensus 154 -------~~--~l~i~~~~~~~d~G~Y~-C~a~N~~g~~s~~ 185 (193)
T 2if7_A 154 -------QP--NLTVSWDPRISSEQDYT-CIAENAVSNLSFS 185 (193)
T ss_dssp -------SS--EEEEEECTTTCSCCEEE-EEEEETTEEEEEE
T ss_pred -------CC--eEEEEeccCcCCCCcEE-EEEECCCCccccc
Confidence 12 5777655554 899999 9999999987543
No 318
>4go6_B HCF C-terminal chain 1; tandem fibronectin repeat, protein interaction, transcriptio protein binding; 2.70A {Homo sapiens}
Probab=99.70 E-value=1.1e-17 Score=173.94 Aligned_cols=163 Identities=17% Similarity=0.209 Sum_probs=109.7
Q ss_pred CCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeecceeCCCCCceEEeccCCCCCCCCce
Q psy574 568 NTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVRTLECEPSGVPQL 647 (977)
Q Consensus 568 ~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~g~~s~~~~~~T~~~~P~~~P~~ 647 (977)
.+..|++|.|+++.... ..+. +......+++.+.+|.|++.|.|+|+|+|..|.|++|....+.|.+..|+.+|..
T Consensus 18 ~~~~Vt~Y~~~~~~~~~-~~~~---~~~~~~~t~~~~~~L~p~t~Y~frV~A~n~~G~g~~s~~~~~~t~~~~~~~~~~~ 93 (232)
T 4go6_B 18 TNVMVTHYFLPPDDAVP-SDDD---LGTVPDYNQLKKQELQPGTAYKFRVAGINACGRGPFSEISAFKTCLPGFPGAPCA 93 (232)
T ss_dssp SEEEECEEECCCC----------------------CEEECCTTCEEEEEEEEEETTEEEEECCCEEEECCCTTSCCCCEE
T ss_pred CCEEEEEEEEEeeCCCC-CcEE---EEECCCccEEEeCCCCCCCEEEEEEEEEeCCCccccccceeeeecCCCCCCCCee
Confidence 34457788887755331 2222 2222456789999999999999999999999999999989988887777767765
Q ss_pred eEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCcce------------EEEEecCCcCe---------EEecCC
Q psy574 648 TDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSAL------------INMTVSASTPT---------LLLTNL 706 (977)
Q Consensus 648 v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~~~------------~~~~~~~~~~~---------~~l~~L 706 (977)
+. ...+.++|.|+|.+| ...+|.|++|.|+|+..+.... ......+.... ..+.+|
T Consensus 94 ~~-~~~~~~sv~l~W~~P--~~~~G~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L 170 (232)
T 4go6_B 94 IK-ISKSPDGAHLTWEPP--SVTSGKIIEYSVYLAIQSSQAGGELKSSTPAQLAFMRVYCGPSPSCLVQSSSLSNAHIDY 170 (232)
T ss_dssp EE-EEEETTEEEEEEECC--SCCSSCCCEEEEEEEEC-------------CCEEEEEEEEESSSEEEEEHHHHTTBCBEE
T ss_pred eE-EecCCCEEEEEEeCC--CCCCCceeeEEEEEEECCCCCcceeeeccCCceeeEEEEeccCceEEEEccccEEeeecC
Confidence 54 455788999999999 7778999999999987531110 00111111222 234579
Q ss_pred CCCceEEEEEEEEcCCCcCCCCCceEEeecC
Q psy574 707 SAGIRYSVSLAATNRAGTGPYSRPALLSLTS 737 (977)
Q Consensus 707 ~p~t~Y~~~V~A~~~~G~g~~S~~~~~~t~~ 737 (977)
.+++.|.|+|+|+|.+|.|++|+...+....
T Consensus 171 ~~~t~Y~frV~A~N~~G~Gp~S~v~t~~~~~ 201 (232)
T 4go6_B 171 TTKPAIIFRIAARNEKGYGPATQVRWLQETS 201 (232)
T ss_dssp SSSEEEEEEEEEECSSCBCCCEEEEEECC--
T ss_pred ccCCceEEEEEEECCCcCCCCcccEEeccCC
Confidence 9999999999999999999999866665544
No 319
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative splicing, cell adhesion, cell membrane, glycoprotein, HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R 3epc_R* 3epd_R* 3epf_R*
Probab=99.70 E-value=7.6e-18 Score=174.25 Aligned_cols=172 Identities=23% Similarity=0.327 Sum_probs=124.9
Q ss_pred cccceEEeCCCcEEEEEECCCCCCCCe----EEEEeCCEEeec-----------CCCceEEEec--------CcEEEEcC
Q psy574 11 QPKSQRVAAGDTALLECGPPRGHPEPT----LVWKKNGHPIDF-----------ENSKRLRLVD--------GTNLAIQD 67 (977)
Q Consensus 11 ~p~~~~v~~G~~v~L~C~~~~g~P~~~----v~W~k~g~~l~~-----------~~~~r~~~~~--------~g~L~I~~ 67 (977)
.|.++.+.+|++++|.|.+..+.+.+. |.|+|++..... ...+|+.+.. +++|.|.+
T Consensus 5 ~p~~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~I~~ 84 (221)
T 3eow_R 5 APTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRDASLRMFG 84 (221)
T ss_dssp CCCCCCCCCSSCCEEECCCCCCSSSCCCEEEEEECBSSSCSSCCCEEESSSEEECSCSSCEEESSCSSCCCCCCEEECCC
T ss_pred CCCcEEEEeCCCEEEEeeeccCCCCCccceEEEEEeCCCCceEEEEECCCCCCcCCCCcEEEecccCCCCCCCceEEEcc
Confidence 466788999999999999844344444 999998642211 1145666554 56899999
Q ss_pred CCCCCCeEEEEEEEecCceeeeEeEEEEEEcCCeEEeCCCceEEeCCCeEE-EEEEec-ccCceEEEEEECCeeCCCCce
Q psy574 68 SRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIV-FECSVG-GDAVLTVHWKRLGSAMPEDRM 145 (977)
Q Consensus 68 v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~-l~C~v~-g~p~~~i~W~k~~~~l~~~~~ 145 (977)
++.+|+|.|+|.+.+......+..+.|.|..+|.+...+.... .+|+.+. |.|.+. |.|.+.|.|+|++........
T Consensus 85 v~~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~P~~~~~~~~~~-~~g~~~~~l~C~~~~g~P~p~v~W~k~~~~~~~~~~ 163 (221)
T 3eow_R 85 LRVEDEGSYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQ-LTGEPVPMARCVSTGGRPPAQITWHSDLGGMPQTSQ 163 (221)
T ss_dssp SSCCCCSCBEEEEEESSSCSCEEECCCCCCCCCEEEEEEECCC-CCSSSCCEEEEEEESCSSCCCEEEECSSSCCCCCEE
T ss_pred CChHHCeEEEEEEEeCCCCceEEEEEEEEEECCCceeecCCcc-cCCceEEEEEEECCCccCCCeeEEEeCCCCCCccce
Confidence 9999999999999987623345667888888888776544333 6788884 999985 899999999998554332111
Q ss_pred E-------EeccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEE
Q psy574 146 S-------VLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATL 183 (977)
Q Consensus 146 ~-------~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L 183 (977)
. ......|.|.++..+|.|.|+|.|.|..+.....+.|
T Consensus 164 ~~~~~~~~~~~~s~L~i~~~~~~d~g~ytC~a~n~~~~~~~~~~v 208 (221)
T 3eow_R 164 VPGFLSGTVTVTSLWILVPSSQVDGKQVTCKVEHESFEKPQLLTV 208 (221)
T ss_dssp ECCCCBTTBCCEEEEECCCCSCCCCCCEEEEECCSCSSSCEEEEE
T ss_pred eecCCCCcEEEEEEEEEeCCHHHCCCeEEEEEECCCCCCCeEEEE
Confidence 0 1123479999999999999999999987654444333
No 320
>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*
Probab=99.70 E-value=2.1e-16 Score=166.60 Aligned_cols=180 Identities=18% Similarity=0.227 Sum_probs=122.0
Q ss_pred eCCCceEEeCCCeEEEEEEecccCceE-----EEEEECCeeCCC----------------CceEEe------ccceEEEc
Q psy574 104 RGPKDTTVSASSIIVFECSVGGDAVLT-----VHWKRLGSAMPE----------------DRMSVL------PSRSLQLS 156 (977)
Q Consensus 104 ~~p~~~~v~~G~~v~l~C~v~g~p~~~-----i~W~k~~~~l~~----------------~~~~~~------~~~~L~I~ 156 (977)
..|..+.+.+|++++|.|.+.|.|.+. |.|+|++..... .+..+. .+.+|.|.
T Consensus 8 ~~p~~~~v~~G~~v~L~C~~~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~ 87 (248)
T 3pv7_A 8 MAGGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLP 87 (248)
T ss_dssp STTSEEEEETTSCEEECCEEEESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBCCEEES
T ss_pred eCCCCeEEeCCCCEEEeeEEecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCcEEEEeC
Confidence 345667899999999999998887765 999997543221 011110 23459999
Q ss_pred cCccCCCeEEEEEEEeCCeeEEEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEEec-CCCC-eEEEEEcCeeeeecC-
Q psy574 157 DVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEG-SPPP-STFWMLEGNRSLIYP- 233 (977)
Q Consensus 157 ~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g-~p~~-~i~W~~~g~~~~~~~- 233 (977)
+++.+|+|.|+|.+.+..+.....+.|.|..+|.+...+.. .+..|..++|.|.+.+ .|.+ .+.|+++|..+....
T Consensus 88 ~v~~~D~G~Y~C~~~~~~~~~~~~~~L~V~~~P~v~~~~~~-~~~~~~~~~L~C~~~g~~P~pi~v~W~k~g~~l~~~~~ 166 (248)
T 3pv7_A 88 GIQLEEAGEYRCEVVVTPLKAQGTVQLEVVASPASRLLLDQ-VGMKENEDKYMCESSGFYPEAINITWEKQTQKFPHPIE 166 (248)
T ss_dssp SCCGGGCEEEEEEEEETTEEEEEEEEEEEEBCCEEEEECC---------CEEEEEEEEEBSSCCEEEEEEECSSSCSCEE
T ss_pred CCCHHHCeEEEEEEEeCCccceeEEEEEEecCCceEEecCC-ccccCCCcEEEEEEccEECCCeEEEEEECCccCCCccc
Confidence 99999999999999999888888999999999998877663 4556778889999998 7888 999999996432100
Q ss_pred -CCccccEEEEEccCCc----eEEEEeecccCCCCeEEEEEEEcCCCcee--EEEEEEE
Q psy574 234 -GDRVDNIQAEITSDGM----NLLKIQNVSRTAAPLIILCLGVNAAGSDL--ARASLTV 285 (977)
Q Consensus 234 -~~~~~~~~~~~~~~g~----s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~--~~~~l~V 285 (977)
.............++. +.|.|.....+|.|.|+ |.|.|..+... ..+.|.|
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Yt-C~a~n~~~~~~~~~~v~l~V 224 (248)
T 3pv7_A 167 ISEDVITGPTIKNMDGTFNVTSCLKLNSSQEDPGTVYQ-CVVRHASLHTPLRSNFTLTA 224 (248)
T ss_dssp ECTTEEEEEEEECTTSCEEEEEEEECC--CCCTTCEEE-EEEECTTCSSCEEEEECC--
T ss_pred cccceeecccEECCCCCEEEEEEEEEcCccccCCCEEE-EEEECCCCCCCcEEEEEEEE
Confidence 0000001111111221 37888999999999999 99999988744 4455555
No 321
>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}
Probab=99.70 E-value=8.9e-17 Score=166.22 Aligned_cols=174 Identities=22% Similarity=0.353 Sum_probs=128.1
Q ss_pred CceEEeCCCeEEEEEEecccCc-----eEEEEEECCeeC--------------CCCceEEec------cceEEEccCccC
Q psy574 107 KDTTVSASSIIVFECSVGGDAV-----LTVHWKRLGSAM--------------PEDRMSVLP------SRSLQLSDVRLE 161 (977)
Q Consensus 107 ~~~~v~~G~~v~l~C~v~g~p~-----~~i~W~k~~~~l--------------~~~~~~~~~------~~~L~I~~v~~~ 161 (977)
..+.+.+|++++|.|.+.+.|. +.+.|++++... ..++..+.. +.+|.|.+++.+
T Consensus 3 ~~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~ 82 (222)
T 4i0k_A 3 DPVVALVDTDATLRCSFSPEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTALFPDLLVQGNASLRLQRVRVT 82 (222)
T ss_dssp CCCCCCTTSCEEECCBCCCCTTCCTTTEEEEEEETTTCCEEEEEETTEEEEESSCSCEECCTTTGGGTBCCEEECSCCGG
T ss_pred CCEEEECCCCeEEEEEecCCCCCCCCceEEEEEECCCccEEEEEcCCcccccceeCcEEEecccccCCeEEEEECCcccc
Confidence 3456889999999999987654 789999987543 234444433 578999999999
Q ss_pred CCeEEEEEEEeCCeeEEEEEEEEEeeC---CeEEecCCCcEEeeCCeEEEEEEE-ecCCCCeEEEEEcCeeeeecCCCcc
Q psy574 162 DAGEYVCEAENAVGKISASATLTVQMA---PIVRERPSDLRLEVGRDAVFLCGI-EGSPPPSTFWMLEGNRSLIYPGDRV 237 (977)
Q Consensus 162 D~G~Y~C~a~n~~g~~~~~~~L~V~~~---p~~~~~p~~~~v~~G~~v~L~C~~-~g~p~~~i~W~~~g~~~~~~~~~~~ 237 (977)
|+|.|+|.+.+. +..+..+.|.|..+ |.+...+ ...+.+|+.++|.|.+ .+.|.+.+.|++++.... ...
T Consensus 83 D~G~Y~C~~~~~-~~~~~~~~l~V~~~~~~p~i~~~~-~~~v~~G~~~~l~C~~~~g~P~~~v~W~~~~~~~~----~~~ 156 (222)
T 4i0k_A 83 DEGSYTCFVSIQ-DFDSAAVSLQVAAPYSKPSMTLEP-NKDLRPGNMVTITCSSYQGYPEAEVFWKDGQGVPL----TGN 156 (222)
T ss_dssp GCSCEEEEEEEC-CCCCCCCCCCCCBCCCCCEEECCC------CCSEEEEEEEEEEEBSCCEEEEECTTSCBC----CSE
T ss_pred cCEEEEEEEEeC-CCceEEEEEEEEcCCCCCcEEeCC-CceecCCceEEEEEecccccCCCeEEEEcCCCccC----CCC
Confidence 999999999986 34456667777754 5555444 4477899999999999 889999999999443321 111
Q ss_pred ccEEEEEccCCc-eEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEEC
Q psy574 238 DNIQAEITSDGM-NLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSG 287 (977)
Q Consensus 238 ~~~~~~~~~~g~-s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~ 287 (977)
.........++. +.|.|.++..+|.|.|+ |.|.|..|.....+.|.|.+
T Consensus 157 ~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~-C~a~n~~g~~~~~~~l~V~~ 206 (222)
T 4i0k_A 157 VTTSQMANERGLFDVHSVLRVVLGANGTYS-CLVRNPVLQQDAHGSVTITG 206 (222)
T ss_dssp EEEEEEECTTSCEEEEEEEEEECCTTCEEE-EEEEETTTTEEEEEEEECCC
T ss_pred cceeEEcCCCCeEEEEEEEEEEeCCCCEEE-EEEECCCCCCceEEEEEEeC
Confidence 222233332333 45899999999999999 99999999999999999987
No 322
>2dbj_A Proto-oncogene tyrosine-protein kinase MER precursor; C-MER, receptor tyrosine kinase mertk, FN3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=1.5e-16 Score=147.74 Aligned_cols=116 Identities=20% Similarity=0.263 Sum_probs=99.6
Q ss_pred eeCCCCCceEEeccCCCCCCCCceeEEE-EecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCc--ceEEEEecCCcCe
Q psy574 624 VDGKPSNLRAVRTLECEPSGVPQLTDPV-LLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNS--ALINMTVSASTPT 700 (977)
Q Consensus 624 g~g~~s~~~~~~T~~~~P~~~P~~v~~~-~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~--~~~~~~~~~~~~~ 700 (977)
|.|++|..+.++|.+++|+.+|.++++. ..++++|.|+|++|+....||.|++|+|+|+..+.. ......+..+.++
T Consensus 1 G~g~~S~~v~~~T~~~~P~~~P~~~~~~~~~s~~sv~l~W~pp~~~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~ 80 (124)
T 2dbj_A 1 GSSGSSGWILASTTEGAPSVAPLNVTVFLNESSDNVDIRWMKPPTKQQDGELVGYRISHVWQSAGISKELLEEVGQNGSR 80 (124)
T ss_dssp CCSCCCCCCCCCCSSCCCCSCCEEEEEEECSSSSEEEEEEECCSCCSTTCCEEEEEEEEEEEETTEEEEEEEEEESTTSC
T ss_pred CcCCCCCCEEEEccCCCCCCCCcceEEEecCCCCEEEEEEcCCCcccCCCeEeEEEEEEEECCCCCccceEEEeCCCcce
Confidence 5688999999999999999999999998 577899999999998778999999999999753311 2222234567889
Q ss_pred EEecCCCCCceEEEEEEEEcCCCcCCCCCceEEeecCCC
Q psy574 701 LLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGP 739 (977)
Q Consensus 701 ~~l~~L~p~t~Y~~~V~A~~~~G~g~~S~~~~~~t~~~~ 739 (977)
++|.+|.|++.|.|+|+|+|.+|.|++|.++.++|.+..
T Consensus 81 ~~l~~L~p~t~Y~~~V~A~n~~G~Gp~S~~~~~~T~~~~ 119 (124)
T 2dbj_A 81 ARISVQVHNATCTVRIAAVTRGGVGPFSDPVKIFIPAHS 119 (124)
T ss_dssp EEEECCCSSSEEEECEEEEESSCBCCCCCCEEEECCCSC
T ss_pred EEecCCCCCCEEEEEEEEECCCccCCCCCCEEEEcCCCC
Confidence 999999999999999999999999999999999998765
No 323
>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...
Probab=99.70 E-value=9.1e-17 Score=164.76 Aligned_cols=170 Identities=18% Similarity=0.211 Sum_probs=127.6
Q ss_pred EEeCCCceEEeCCCeEEEEEEecccCceEEEEEEC--CeeC-------------CCCceEEe---ccceEEEccCccCCC
Q psy574 102 IIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRL--GSAM-------------PEDRMSVL---PSRSLQLSDVRLEDA 163 (977)
Q Consensus 102 ~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~--~~~l-------------~~~~~~~~---~~~~L~I~~v~~~D~ 163 (977)
+...| ...+.+|++++|.|.+. +.+.+.|+|+ +..+ ..+++... .+.+|.|.+++.+|+
T Consensus 4 v~~~~-~~~v~~G~~v~L~C~~~--~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~ 80 (211)
T 3tv3_L 4 LTQPP-SASGSPGQSITISCTGT--SNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSKSGNTASLTVSGLQTDDE 80 (211)
T ss_dssp CBCCS-EEEECTTCEEEEEEECC--CSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEEESCCGGGC
T ss_pred EEeCc-eEEEcCCCCEEEEEEEC--CCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEccCCEEEEEECCCChhHC
Confidence 44455 78899999999999998 8889999994 2221 22455433 345799999999999
Q ss_pred eEEEEEEEeCCe--eEEEEEEEEEe----eCCeEEecCCCcEEeeCCeEEEEEEEecC--CCCeEEEEEcCeeeeecC--
Q psy574 164 GEYVCEAENAVG--KISASATLTVQ----MAPIVRERPSDLRLEVGRDAVFLCGIEGS--PPPSTFWMLEGNRSLIYP-- 233 (977)
Q Consensus 164 G~Y~C~a~n~~g--~~~~~~~L~V~----~~p~~~~~p~~~~v~~G~~v~L~C~~~g~--p~~~i~W~~~g~~~~~~~-- 233 (977)
|.|+|.+.|..+ .....+.|.|. .+|.+...+....+.+|+.++|.|.+.+. +.+.+.|+++|..+....
T Consensus 81 G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~ 160 (211)
T 3tv3_L 81 AVYYCGSLVGNWDVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVET 160 (211)
T ss_dssp EEEEEEEEETTTEEEECCCEEEEECCSCCBCCEEEEECCCHHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEEECTTEEE
T ss_pred EEEEEEEecCCCceeECCCceEEEeCCCCcCCeeEecCCchhhhcCCCeEEEEEeeeecCCCeEEEEEECCeecCCCccc
Confidence 999999999887 35566788888 67888887776666689999999999885 357899999998763200
Q ss_pred ----CCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEE
Q psy574 234 ----GDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARA 281 (977)
Q Consensus 234 ----~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~ 281 (977)
....+.+... +.|.|..+..+|.|.|+ |.|.|..+....++
T Consensus 161 ~~~~~~~~~~~~~~------s~L~i~~~~~~d~g~Y~-C~v~~~~~~~~~~~ 205 (211)
T 3tv3_L 161 TTPSKQSNNKYAAS------SYLSLTPEQWKSHRSYS-CQVTHEGSTVEKTV 205 (211)
T ss_dssp CCCEECTTSSEEEE------EEEEECHHHHHHSSCEE-EEEEETTEEEEEEE
T ss_pred CCceECCCCCEEEE------EEEEEcHHHhCCCCeEE-EEEEECCCCEEeec
Confidence 0011222222 37999999999999999 99999886554443
No 324
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49}
Probab=99.70 E-value=1.8e-15 Score=152.00 Aligned_cols=244 Identities=16% Similarity=0.316 Sum_probs=171.4
Q ss_pred cceecccceEEeCCCcEEEEEECCCCCC---CCeEEEEeCCEEeecCCCceEEEecCcEEEEcCCCCCCCeEEEEEEEec
Q psy574 7 EFRVQPKSQRVAAGDTALLECGPPRGHP---EPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNV 83 (977)
Q Consensus 7 ~~~~~p~~~~v~~G~~v~L~C~~~~g~P---~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~n~ 83 (977)
.+.+.|....+..|+.++|+|.+..|.| ...|+|+|||..+.. ..+.|.|..++..|+|.|+|++.+.
T Consensus 4 tVs~~P~~~~i~~GdsVTLTatVaGGkP~pspyTYqWyKDG~~IsG---------aT~tLti~s~t~sdSG~YqCvVTDa 74 (304)
T 3shs_A 4 TVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHEN---------NTATLTVADATSENAGSYKVTVQDT 74 (304)
T ss_dssp EEEEEESCSSBCTTCCEEEEEEEEESSSCCCCEEEEEEETTEECSC---------CSSEEEESSCCGGGCEEEEEEEEET
T ss_pred EEEeCCCCccccCCCCEEEEEEecCCCCCCCCceEEEEECCccccC---------CcceEEeeeccccCCeEEEEEEEEC
Confidence 4567899999999999999999867777 558999999998831 2457999999999999999999998
Q ss_pred CceeeeEeEEEEEEcC--CeE-EeCCCceEEeCCCeEEEEEEe--c-ccC-----ceEEEEEECCeeCCCCceEEeccce
Q psy574 84 AGTRESTDAVLRVLVK--PYI-IRGPKDTTVSASSIIVFECSV--G-GDA-----VLTVHWKRLGSAMPEDRMSVLPSRS 152 (977)
Q Consensus 84 ~g~~~s~~~~l~V~~~--P~~-~~~p~~~~v~~G~~v~l~C~v--~-g~p-----~~~i~W~k~~~~l~~~~~~~~~~~~ 152 (977)
.|...... .+.|..+ +.+ ...|....+..|..+.|.+.+ . |.| ..+++|+|++..+.. ...
T Consensus 75 ~Gcs~tSs-~VtVT~~a~l~i~it~P~s~~vssg~sVtL~aTVt~SGGtppA~~~~yTYQWyKngt~Isg-------Aq~ 146 (304)
T 3shs_A 75 DTMTSVES-EVFLMEEAELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDT-------TQD 146 (304)
T ss_dssp TTCCEEEC-CCEEECBCCEEEEESSCSEEEECSSCCEEEEEEEEETTSCCSSTTCCCEEEEEETTEEEES-------SSE
T ss_pred CCCeeeee-eEEEeccCceeEEecCCCceeccCCCeEEEEEEEeccCCCCcccCCCceeEEeeCCeEccC-------ccc
Confidence 87654322 3333332 233 234666677788999999988 4 344 469999999987643 346
Q ss_pred EEEccCccCCCeEEEEEEEeCCee--EEEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEEe--------cCCCCe--E
Q psy574 153 LQLSDVRLEDAGEYVCEAENAVGK--ISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIE--------GSPPPS--T 220 (977)
Q Consensus 153 L~I~~v~~~D~G~Y~C~a~n~~g~--~~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~--------g~p~~~--i 220 (977)
|++...+..++|.|+|.+.|..+. .++.+.+.+...+.-........+..|+.+.|...+. |.|... +
T Consensus 147 lT~sS~TateaG~YtV~VTn~~~~c~~s~~~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (304)
T 3shs_A 147 ITIQEFTADKNGVYTVKVWGESEDSAASASTKIMLATMNVDQDVVESKTVALGNEISLNYVVSEDIVGDSSGMPNLTIKY 226 (304)
T ss_dssp EEECSCCGGGCEEEEEEEESSSGGGCEEEEEEEEECEEEEEECCCSEEEEETTSCEEECCEEEEECCSCCTTCCEEEEEE
T ss_pred cceeeEEecCCeEEEEEEEcCCCCcccccceEEEEEccccchhheEeehhhcCcEEEEEEEEeeccccCCCCCCceEEEE
Confidence 788889999999999999998763 5666677666544444445566888999999987662 223323 4
Q ss_pred EEEEcC--ee--eeecC--CCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEc
Q psy574 221 FWMLEG--NR--SLIYP--GDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVN 272 (977)
Q Consensus 221 ~W~~~g--~~--~~~~~--~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n 272 (977)
.|+... .. .++.. +..-.-|.+.. +| .|.-.....+|...|. |+|.-
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~-~~~~~ 279 (304)
T 3shs_A 227 NWYLQREGQLSPTLIGSEVGEALEGFSITP--DG--HLFKESATYDDTAKFW-CVAKL 279 (304)
T ss_dssp EEEEECTTCCSCEEEESSSEECGGGEEECT--TS--CEEESSCCGGGCEEEE-EEEEE
T ss_pred EEEEeecCccCchhhhhhhhhhhccceeCC--Cc--ceeecccccccchhee-eHHHH
Confidence 587543 21 11111 11122333333 46 6777778889999999 98753
No 325
>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...
Probab=99.70 E-value=5.7e-17 Score=166.22 Aligned_cols=165 Identities=15% Similarity=0.241 Sum_probs=118.9
Q ss_pred ecccceEEeCCCcEEEEEECCCCCC--CCeEEEEeC--CEEee--------------cCCCceEEEecC-----cEEEEc
Q psy574 10 VQPKSQRVAAGDTALLECGPPRGHP--EPTLVWKKN--GHPID--------------FENSKRLRLVDG-----TNLAIQ 66 (977)
Q Consensus 10 ~~p~~~~v~~G~~v~L~C~~~~g~P--~~~v~W~k~--g~~l~--------------~~~~~r~~~~~~-----g~L~I~ 66 (977)
.+|..+.+.+|++++|.|.+ .+.| .+.|.|+|+ |..+. ....+|+.+..+ .+|.|.
T Consensus 5 ~~p~~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~ 83 (210)
T 3d9a_H 5 QESGPSLVKPSQTLSLTCSV-TGDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLN 83 (210)
T ss_dssp EEESCSEECTTSCEEEEEEE-ESSCGGGSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGGGTEEEEEEC
T ss_pred ecCCCEEecCCCcEEEEEEE-ecccCCCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCCCCEEEEEEC
Confidence 45778899999999999998 5554 488999985 32211 012457776532 389999
Q ss_pred CCCCCCCeEEEEEEEecCceeeeEeEEEEEEc----CCeEEeCCCceEEeCCCeEEEEEEeccc-Cce-EEEEEECCeeC
Q psy574 67 DSRKTDDGRYQCVVKNVAGTRESTDAVLRVLV----KPYIIRGPKDTTVSASSIIVFECSVGGD-AVL-TVHWKRLGSAM 140 (977)
Q Consensus 67 ~v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V~~----~P~~~~~p~~~~v~~G~~v~l~C~v~g~-p~~-~i~W~k~~~~l 140 (977)
+++.+|+|.|+|.+.|.. .....+.|.|.. +|.+...+....+.+|+.++|.|.+.|. |.+ .|.|++++..+
T Consensus 84 ~v~~~D~G~Y~C~~~~~~--~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~ 161 (210)
T 3d9a_H 84 SVTTEDTATYYCANWDGD--YWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSS 161 (210)
T ss_dssp SCCGGGCEEEEEEETTSS--CBCCCEEEEECCCCCBCCEEEEECCTTSCCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCT
T ss_pred CCCcccCEEEEEEEecCc--ccccceEEEeccCCCCCCEEEEecCCcccccCCcEEEEEEEeeEecCCcEEEEeeCCccc
Confidence 999999999999998753 112335677763 4665554434457889999999999876 888 99999998764
Q ss_pred CC---Cce----EEeccceEEEccCccCCCeEEEEEEEeCCeeEE
Q psy574 141 PE---DRM----SVLPSRSLQLSDVRLEDAGEYVCEAENAVGKIS 178 (977)
Q Consensus 141 ~~---~~~----~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~ 178 (977)
.. ... .......|.|.++..+| |.|+|.|.|..+...
T Consensus 162 ~~~~~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~ 205 (210)
T 3d9a_H 162 GVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTK 205 (210)
T ss_dssp TEEECCCEEETTEEEEEEEEEEEGGGTTT-SCCEEEEEEGGGTEE
T ss_pred ceEEcCCccCCCcEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCcc
Confidence 21 111 11123569999998877 999999999987643
No 326
>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}
Probab=99.69 E-value=3.6e-18 Score=178.26 Aligned_cols=169 Identities=18% Similarity=0.215 Sum_probs=102.2
Q ss_pred ccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCC--EEe---e-------cCCCceEEEec---CcEEEEcCCCC
Q psy574 6 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNG--HPI---D-------FENSKRLRLVD---GTNLAIQDSRK 70 (977)
Q Consensus 6 ~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g--~~l---~-------~~~~~r~~~~~---~g~L~I~~v~~ 70 (977)
..+...|..+.+.+|++++|.|.+ .+.|.+.|.|+|++ ..+ . .....|+.+.. +.+|.|.+++.
T Consensus 24 ~~v~~~p~~~~v~~G~~v~L~C~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~ 102 (233)
T 3bqu_C 24 TTVTQSPASLSMSIGEKVTIRCIT-STDIDDDMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSSGYGTDFVFTIENMLS 102 (233)
T ss_dssp CCEEEECSBC-------CCEEEEE-EEEESSCEEEEEECTTSCCEEEECTTSCBCTTSCTTCCCCEEEEEEEEC-----C
T ss_pred eeEEEcCCeEEEecCCCEEEEEec-CCcCCCeEEEEEECCCCCcEEEEEcCCccCCCCCccEEeeccCCEEEEEECCCCH
Confidence 345556888999999999999998 67777889999853 211 0 11123444332 23799999999
Q ss_pred CCCeEEEEEEEecCceeeeEeEEEEEEc---CCeEEeCCCceEEeCCCeEEEEEEeccc-Cce-EEEEEECCeeCCCC-c
Q psy574 71 TDDGRYQCVVKNVAGTRESTDAVLRVLV---KPYIIRGPKDTTVSASSIIVFECSVGGD-AVL-TVHWKRLGSAMPED-R 144 (977)
Q Consensus 71 ~D~G~Y~C~a~n~~g~~~s~~~~l~V~~---~P~~~~~p~~~~v~~G~~v~l~C~v~g~-p~~-~i~W~k~~~~l~~~-~ 144 (977)
+|+|.|+|.+.|..+......+.|.|.. +|.+...+....+.+|++++|.|.+.|. |.+ .|.|+|++..+..+ .
T Consensus 103 ~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~ 182 (233)
T 3bqu_C 103 EDVADYYCLQSDNLPYTFGGGTNLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVL 182 (233)
T ss_dssp CCCSEEEEEECSSSSCCBCCCCBC---CCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEEC-----CCEE
T ss_pred HHCEEEEEEEecCCceeecCCEEEEEeCCCCCCEEEEeCCCHHhhcCCceEEEEEEccccCCceEEEEEECCeeCCCCce
Confidence 9999999999987654333344567764 5766664444444579999999999874 443 79999999887654 1
Q ss_pred eEE----------eccceEEEccCccCCCeEEEEEEEeCCe
Q psy574 145 MSV----------LPSRSLQLSDVRLEDAGEYVCEAENAVG 175 (977)
Q Consensus 145 ~~~----------~~~~~L~I~~v~~~D~G~Y~C~a~n~~g 175 (977)
... .....|.|..+..+|+|.|+|.|.|...
T Consensus 183 ~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~ 223 (233)
T 3bqu_C 183 NSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTS 223 (233)
T ss_dssp EEECCCCTTTCCEEEEEEEEEEHHHHHTCCCEEEEEEEC--
T ss_pred EecCCccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence 111 0123688999999999999999999753
No 327
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A
Probab=99.69 E-value=1.9e-17 Score=166.20 Aligned_cols=144 Identities=15% Similarity=0.296 Sum_probs=109.9
Q ss_pred EEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceEEeccceEEEcc-CccCCCeEEEEEEEeCCeeEEEEEEEEEee-
Q psy574 110 TVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSD-VRLEDAGEYVCEAENAVGKISASATLTVQM- 187 (977)
Q Consensus 110 ~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~~~~~L~I~~-v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~~- 187 (977)
...+|+++.|.|.+.+ +. .|.|+|++..+... .+++|.|.+ ++.+|+|.|+|.|.|..|.....+.+.|..
T Consensus 10 v~~~G~~v~L~C~~~~-~~-~i~W~k~g~~l~~~-----~~~~L~I~~~~~~~D~G~Y~C~a~n~~g~~~~~~~~~v~~~ 82 (186)
T 1jbj_A 10 VSISGTSVELTCPLDS-DE-NLKWEKNGQELPQK-----HDKHLVLQDFSEVEDSGYYVCYTPASNKNTYLYLKARVGSA 82 (186)
T ss_dssp EEEETTEEEEECSSCC-CT-TCEEEETTEEECSC-----CCSEEEEESCCTTTSCEEEEEECSSCCCCCCEEECCCCCSC
T ss_pred EEeCCcEEEEEEeCCC-CC-ceEEEECCEECCCC-----CCCEEEECCCCccccCEEEEEEEEeCCCcEEEEEEEEEecc
Confidence 4578999999999987 43 49999999988754 456899999 999999999999999988755555555542
Q ss_pred -CCeEE------------------ecCC--C---cEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCccccEEEE
Q psy574 188 -APIVR------------------ERPS--D---LRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAE 243 (977)
Q Consensus 188 -~p~~~------------------~~p~--~---~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~ 243 (977)
++... ..+. . ..+.+|+.++|.|.+ |.+.|.|+|+|..+....
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~l~C~~---p~p~i~W~k~g~~i~~~~---------- 149 (186)
T 1jbj_A 83 DDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGL---TDKTIKWLKDGSIISPLN---------- 149 (186)
T ss_dssp CCCCCCCCCCCCCSCCSSSTTCCSCCCCSSCCEECCCSSSCEEEEECSS---SCSCEEEEETTEECCCSS----------
T ss_pred cccccccccccccccCCccccccccccccccccceecCCCCeEEEEeeC---CCCeEEEEECCEECcccC----------
Confidence 22100 0000 1 123499999999988 789999999998864211
Q ss_pred EccCCceEEEEeecccCCCCeEEEEEEEcCCCce
Q psy574 244 ITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSD 277 (977)
Q Consensus 244 ~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~ 277 (977)
.....|.|.++..+|+|.|+ |.|.|..|..
T Consensus 150 ---~~~~~L~i~~v~~~D~G~Y~-C~a~N~~g~~ 179 (186)
T 1jbj_A 150 ---ATKNTWNLGNNAKDPRGTYQ-CQGAKETSNP 179 (186)
T ss_dssp ---CCSSCCEEEETTSCCEEEEE-EEESSCEEEE
T ss_pred ---CCcceEEECCCCcCcCEEEE-EEEEcCcCCc
Confidence 02238999999999999999 9999998865
No 328
>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}
Probab=99.69 E-value=1.1e-16 Score=170.07 Aligned_cols=167 Identities=17% Similarity=0.274 Sum_probs=112.6
Q ss_pred cccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeC--CE---Eee-cC-----------CC-ceEEEe----cCcE
Q psy574 5 REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKN--GH---PID-FE-----------NS-KRLRLV----DGTN 62 (977)
Q Consensus 5 ~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~--g~---~l~-~~-----------~~-~r~~~~----~~g~ 62 (977)
.+.+.+.|.++.+.+|++|+|.|.+ .+.|.+.|.|+|. +. .+. .. .. .++... .+.+
T Consensus 2 s~~v~~~p~~~~v~~G~~v~L~C~~-~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 80 (259)
T 3omz_A 2 SSNLEGRTKSVIRQTGSSAEITCDL-AEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRKNLR 80 (259)
T ss_dssp ---------CEEEETTCCEEEECCC------CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC--CCCE
T ss_pred ccccccCCceeEecCCCcEEEEEEE-ccCCCcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecCCCCeEE
Confidence 4678888999999999999999999 7778889999982 11 110 00 01 122111 2346
Q ss_pred EEEcCCCCCCCeEEEEEEEecCce--eeeEeEEEEEEc-----------------CCeEEeCCCceEEeCCCeEEEEEEe
Q psy574 63 LAIQDSRKTDDGRYQCVVKNVAGT--RESTDAVLRVLV-----------------KPYIIRGPKDTTVSASSIIVFECSV 123 (977)
Q Consensus 63 L~I~~v~~~D~G~Y~C~a~n~~g~--~~s~~~~l~V~~-----------------~P~~~~~p~~~~v~~G~~v~l~C~v 123 (977)
|.|.+++.+|+|.|+|.+.+..+. .....+.|.|.. .|.+...|....+.+|++++|.|.+
T Consensus 81 L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~ 160 (259)
T 3omz_A 81 MILRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQKVTQAQSSVSMPVRKAVTLNCLY 160 (259)
T ss_dssp EEESSCCGGGCEEEEEEEECTTSSCEEECCCEEEEEEC------------------CEEECCCCCEEEETTCCEEECCEE
T ss_pred EEECCCCcccCEEEEEEEeeCCccccEECCCCEEEEecCCCCccccccccccccCCeeeEEeCCEEEEcCCCCEEEEEEC
Confidence 999999999999999999987652 234456788876 3567778888999999999999998
Q ss_pred ccc-CceEEEEEECCe--eC-------------CCCceEEec-----cceEEEccCccCCCeEEEEEEEe
Q psy574 124 GGD-AVLTVHWKRLGS--AM-------------PEDRMSVLP-----SRSLQLSDVRLEDAGEYVCEAEN 172 (977)
Q Consensus 124 ~g~-p~~~i~W~k~~~--~l-------------~~~~~~~~~-----~~~L~I~~v~~~D~G~Y~C~a~n 172 (977)
.+. +.+.+.|+|++. .+ ..+++.+.. ...|.|.+++.+|+|.|+|.+.+
T Consensus 161 ~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~ 230 (259)
T 3omz_A 161 ETSWWSYYIFWYKRLPSKEMIFLIRQGSDEQNAKSGRYSVNFKKAAKSVALTISALQLEDSAKYFCALGE 230 (259)
T ss_dssp ECCCSSCEEEEEEECTTCCEEEEEEEETTSCCCEETTEEECCBGGGTBCCEEESSCCGGGCSEEEEEEES
T ss_pred CCccCCceEEEeeeCCCCCcEEEEEECCcCCcccCCeEEEEEcCcCCEEEEEECCCChhHCEEEEEEEeC
Confidence 764 788999999542 11 023444432 24699999999999999999985
No 329
>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*
Probab=99.69 E-value=2.7e-16 Score=162.39 Aligned_cols=167 Identities=16% Similarity=0.270 Sum_probs=120.9
Q ss_pred ecccceEEeCCCcEEEEEECCCCCC--CCeEEEEeCC--E---Eee------------cCCCceEEEecC-----cEEEE
Q psy574 10 VQPKSQRVAAGDTALLECGPPRGHP--EPTLVWKKNG--H---PID------------FENSKRLRLVDG-----TNLAI 65 (977)
Q Consensus 10 ~~p~~~~v~~G~~v~L~C~~~~g~P--~~~v~W~k~g--~---~l~------------~~~~~r~~~~~~-----g~L~I 65 (977)
.+|..+.+.+|++|+|.|.+ .+.| .+.|.|+|+. . .+. ....+|+.+..+ .+|.|
T Consensus 5 ~q~~~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I 83 (220)
T 2fbj_H 5 LESGGGLVQPGGSLKLSCAA-SGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQM 83 (220)
T ss_dssp EEECCEEECTTCCEEEEEEE-ESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEE
T ss_pred ecCCCeEecCCCcEEEEEEe-cCccCCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeCCCCEEEEEE
Confidence 45677999999999999998 5554 5789999842 2 121 112467777643 37999
Q ss_pred cCCCCCCCeEEEEEEEecCce--eeeEeEEEEEEc----CCeEEeCCCceEEeCCCeEEEEEEeccc-Cc--eEEEEEEC
Q psy574 66 QDSRKTDDGRYQCVVKNVAGT--RESTDAVLRVLV----KPYIIRGPKDTTVSASSIIVFECSVGGD-AV--LTVHWKRL 136 (977)
Q Consensus 66 ~~v~~~D~G~Y~C~a~n~~g~--~~s~~~~l~V~~----~P~~~~~p~~~~v~~G~~v~l~C~v~g~-p~--~~i~W~k~ 136 (977)
.+++.+|+|.|.|.+.+..+. .....+.|.|.. +|.+...+ ...+.+|+.++|.|.+.|. |. +.|.|+++
T Consensus 84 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~-~~~~~~g~~v~L~C~~~g~~P~~~~~v~W~~~ 162 (220)
T 2fbj_H 84 SKVRSEDTALYYCARLHYYGYNAYWGQGTLVTVSAESARNPTIYPLT-LPPALSSDPVIIGCLIHDYFPSGTMNVTWGKS 162 (220)
T ss_dssp CSCCGGGCEEEEEEEEETTTEEEEECCCEEEEECSSCCBCCEEEEEC-CCSSSCCSSEEEEEEEEEEBSCCCEEEEESCC
T ss_pred CCCChhhCEEEEEEEeccccccceecCCEEEEecCCCCCCCEEEEee-cccccCCCcEEEEEEEEeEECCCcEEEEEecC
Confidence 999999999999999987543 123346788874 45555444 3446789999999999776 76 79999999
Q ss_pred CeeCCC--CceEEec------cceEEEccCccCCCeEEEEEEEeCCeeEE
Q psy574 137 GSAMPE--DRMSVLP------SRSLQLSDVRLEDAGEYVCEAENAVGKIS 178 (977)
Q Consensus 137 ~~~l~~--~~~~~~~------~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~ 178 (977)
+..+.. ....... ...|.|.....+|.|.|+|.|.|..+...
T Consensus 163 ~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~ytC~v~n~~~~~~ 212 (220)
T 2fbj_H 163 GKDITTVNFPPALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSNPVQ 212 (220)
T ss_dssp CSSCEEEECCCEECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTSCCE
T ss_pred CEecceEecCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCceE
Confidence 876521 1111111 23589999999999999999999987643
No 330
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone receptor/immune system complex; 3.80A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1 PDB: 3loh_E
Probab=99.69 E-value=1e-17 Score=208.63 Aligned_cols=248 Identities=13% Similarity=0.082 Sum_probs=171.6
Q ss_pred ceEEEeccCCCCCeEEEEEE-EcCCCc----eEEEEEEEEECCCCCCCcccCCCCCCCCCCCCCCCeEEeeCCCceEEEE
Q psy574 344 GSLVLTDVTKEDSGEYTCVV-KSPHGS----ASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGLTLAW 418 (977)
Q Consensus 344 ~sl~I~~v~~~d~G~Y~C~a-~n~~G~----~~~s~~l~v~~~~~~~~~~~~~~~~~~~p~~P~~~~v~~~~~~sv~lsW 418 (977)
.++.|.++.+...|.|+..| .|..|. +..+..+.+.. ....|++|.++.+...+.+++.|+|
T Consensus 549 ~~~~l~~L~P~T~Y~~~V~A~~n~~G~~~~~~~~S~~v~~~T-------------~~~~Ps~P~~l~~~~~s~tsI~LsW 615 (897)
T 2dtg_E 549 PGWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQT-------------DATNPSVPLDPISVSNSSSQIILKW 615 (897)
T ss_dssp CEEEECSCCSSCBCCBEEEECCCCCSSCCCCCCBCCCBCCBC-------------CCCCCCCCEEEEEEECSSSCEEEEE
T ss_pred cceEeCCCCCCcEEEEEEEEEEeccCCccccCCccceEEEEC-------------CCCCCcCCcceEEEeCCCCEEEEEE
Confidence 56889999999999999999 888886 23333232222 1256889999999999999999999
Q ss_pred EcCCCCCCcccceEEEEEeecCCCC-----CCCCCC--------------------------------------------
Q psy574 419 SRNNQIGSSSLLGYQVEMYSRPLPS-----SSPSGD-------------------------------------------- 449 (977)
Q Consensus 419 ~~p~~~~~~~i~~Y~I~~~~~~~~~-----~~~~~~-------------------------------------------- 449 (977)
.+|.. .++.+.+|.|+|+...... ..|...
T Consensus 616 ~pP~~-~nG~I~~Y~V~~~~~~~~~~~~~~~~~~~~~l~p~t~Y~~~V~A~~~~~~s~~~~~~~~~~~~~~p~~p~~~~~ 694 (897)
T 2dtg_E 616 KPPSD-PNGNITHYLVFWERQAEDSELFELDYCLKGLKLPSRTWSPPFESEDSQKHNQSEYEDSAGECCSCPKTDSQILK 694 (897)
T ss_dssp ECCCC-SSSSCSEEECCEEEECCCCSCTTCSSSCSCCCCCC---------------------------------------
T ss_pred eCCCC-CCCCeeEEEEEEEECCCCccceecccccCCCcCCccccceeeecccccCcccccccccCCCccCCcCcccchhh
Confidence 99966 5667999999987643310 000000
Q ss_pred -----CCcccEEEe--------------------------------ceecCcCeEEEEccCCCCeEEEEEEEEcCCCCCC
Q psy574 450 -----TATATWVRV--------------------------------ATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSA 492 (977)
Q Consensus 450 -----~~~~~w~~~--------------------------------~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~G~s~ 492 (977)
.....|... .......++++.+|.|++.|.|+|+|.|..|.+.
T Consensus 695 ~~~~~s~~~~W~~~~~n~v~~~~p~~~r~~l~~~~n~t~~~~~~~~~~~~~~t~~~i~gL~p~t~Y~~~V~A~n~~G~g~ 774 (897)
T 2dtg_E 695 ELEESSFRKTFEDYLHNVVFVPRPSRKRRSLGDVGNAGNNEEHRPFEKVVNKESLVISGLRHFTGYRIELQACNQDTPEE 774 (897)
T ss_dssp -----------------------------------------CCSCSCEECSCSEEEECSSCSSCEEEECCEEESCSSSSC
T ss_pred hhhhhheeeeEEEccCceEEccCCCcccccccccccccCccccceEEecCCceEEEECCCCCCcEEEEEEEEEeCCCCCC
Confidence 000122210 0011347899999999999999999999999877
Q ss_pred CCCCCceEEeeccccccccccCCcceeecCCCCCCCcchHHHHhhcccccCCceEEEEEeeEeCCCeEEEEEEec--CCC
Q psy574 493 PSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPMTSTSVKLTWEIL--NTD 570 (977)
Q Consensus 493 ~S~~s~~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~g~~~~~~~~~l~~~~~~~~~~l~~~~~~~tsv~lsW~~p--~~~ 570 (977)
+...+..+.........+ +.+|.++++...+.++|.|+|++| .++
T Consensus 775 ~~s~s~~v~~~T~~~~~~---------------------------------p~~P~~l~~~~~~~~sv~LsW~~P~~~nG 821 (897)
T 2dtg_E 775 RCSVAAYVSARTMPEAKA---------------------------------DDIVGPVTHEIFENNVVHLMWQEPKEPNG 821 (897)
T ss_dssp CBCCCCCEEEECCCCCCC---------------------------------CCCCCCCCCCSSSSSCCCCCCCCCCSCSS
T ss_pred CCCCCceeEEeccCccCC---------------------------------CCCCcceEEEeCCCCEEEEEECCCCCCCC
Confidence 522233333311111111 122245677888999999999999 677
Q ss_pred ccceEEEEEEecCCCCCceEEEE--eecCccceEEECCCCCCcEEEEEEEEeecceeCCCCCceEEeccCCCC
Q psy574 571 YIEGVYIYSRGLDPPASVAMLTV--LHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVRTLECEP 641 (977)
Q Consensus 571 ~i~~Y~v~y~~~~~~~~~~~~~~--~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~g~~s~~~~~~T~~~~P 641 (977)
.|.+|.|+|+..+. .+....+ ......+.++|.+|.|+ .|.|+|+|.|..|.|++|..+.++|.+.++
T Consensus 822 ~I~~Y~V~y~~~~~--~~~~~~~~~~~~~~~~~~~l~~L~pg-tY~~rV~A~n~~G~G~~S~~v~~~T~~~p~ 891 (897)
T 2dtg_E 822 LIVLYEVSYRRYGD--EELHLCDTRKHFALERGCRLRGLSPG-NYSVRIRATSLAGNGSWTEPTYFYVTDYLD 891 (897)
T ss_dssp CEEEECCCCBSSSB--CCCCCCCCSSSCCCTTCCCCCSCCSS-EECCCCCEEETTBCCCCCCCCEECCCCCC-
T ss_pred CEEEEEEEEEECCC--cceEEEEeeeeecccCcEEECCCCCC-cEEEEEEEEeCCcccCCCCCEEEEeCCCCC
Confidence 89999999998774 2211111 11246678999999999 699999999999999999999999987543
No 331
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}
Probab=99.69 E-value=1.8e-16 Score=163.09 Aligned_cols=181 Identities=18% Similarity=0.270 Sum_probs=134.8
Q ss_pred ccccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEec---CcEEEEcCCCCCCCeEEEEEE
Q psy574 4 LREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD---GTNLAIQDSRKTDDGRYQCVV 80 (977)
Q Consensus 4 l~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~---~g~L~I~~v~~~D~G~Y~C~a 80 (977)
..|.| ..|.++.+.+|+.++|.|.+ .|.|.+.|.|+|||..+......++.+.. ++.|.|.+++.+|+|.|+|.|
T Consensus 18 ~~P~~-~~p~~~~~~~G~~v~l~C~~-~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a 95 (215)
T 3mtr_A 18 YAPKL-QGPVAVYTWEGNQVNITCEV-FAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTA 95 (215)
T ss_dssp EEEEE-ECCSEEEECTTCCEEEEEEE-EEESCCEEEEEETTEESSCSSSCSEEEEEETTEEEEEECCCSGGGCEEEEEEE
T ss_pred cCCcc-cCCceEEEECCCCEEEEEEE-eecCCCEEEEEECCeECCCCCCccEEEecCCCeeEEEEecCChhhCeEEEEEE
Confidence 35666 57778999999999999999 88999999999999999665556666653 467999999999999999999
Q ss_pred EecCceeeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEe----cccCce--EEEEEECCeeCCCCce-EEe---cc
Q psy574 81 KNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSV----GGDAVL--TVHWKRLGSAMPEDRM-SVL---PS 150 (977)
Q Consensus 81 ~n~~g~~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v----~g~p~~--~i~W~k~~~~l~~~~~-~~~---~~ 150 (977)
.|..|.. +..+.|.|..+|.....+. ....+..+.|.|.. .+.|.. .+.|++++...-.... ... .+
T Consensus 96 ~n~~g~~-~~~~~l~v~~~P~~p~~~~--~~~~~~~~~l~w~~p~~~~~~pi~~y~v~~~~~~~~~w~~~~~~~~~~~~~ 172 (215)
T 3mtr_A 96 VNRIGQE-SLEFILVQADTPSSPSIDQ--VEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASME 172 (215)
T ss_dssp ECSSCEE-EEEEEEEECCCCCCCEEEE--EEEETTEEEEEEECCSCCCSSCEEEEEEEEEETTCCCCEEEEEEHHHHHHH
T ss_pred EECCCce-EEEEEEEECCCCCCCcceE--EEEecceEEEEEecCCccCCCceEEEEEEEEECCCCccccccccccccccc
Confidence 9999875 4567888877665332221 12457789999974 233444 4788888754221110 111 12
Q ss_pred ceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEEeeCC
Q psy574 151 RSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAP 189 (977)
Q Consensus 151 ~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~~~p 189 (977)
..|.|.++...|.|.|+|.|.|..|....+..+.|..+|
T Consensus 173 ~~l~i~~L~~~~~y~~~~~A~N~~G~s~~S~~~~v~T~p 211 (215)
T 3mtr_A 173 GIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQP 211 (215)
T ss_dssp TEEEEECCCTTCEEEEEEEEEESSCBCCCCCCEEEECCC
T ss_pred ccEEECCCCCCCEEEEEEEEEeCCcccCcccceeeEecc
Confidence 789999999999999999999999976666666665444
No 332
>1axi_B HGHBP, growth hormone receptor; complex (hormone-receptor), complex (hormone-receptor) compl; 2.10A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1a22_B 1kf9_B 1hwg_B 1hwh_B 3hhr_B 2aew_A
Probab=99.69 E-value=1.1e-16 Score=166.58 Aligned_cols=188 Identities=11% Similarity=0.132 Sum_probs=132.4
Q ss_pred CceEEEEEeeEeCCCeEEEEEEec-CCCcc--ceEEEEEEecCCC---CCceEEEEee--cCccceEEECCCCCCcEEEE
Q psy574 544 GSLIELTEVKPMTSTSVKLTWEIL-NTDYI--EGVYIYSRGLDPP---ASVAMLTVLH--AGEASGFLVTGLAHYSRYEF 615 (977)
Q Consensus 544 ~~~~~~l~~~~~~~tsv~lsW~~p-~~~~i--~~Y~v~y~~~~~~---~~~~~~~~~~--~~~~~~~~i~~L~p~t~Y~~ 615 (977)
+..|+++.+...+.++++++|+++ .++.. ..|.|.|+..+.. ..+..+.... ......+...+|.+++.|.|
T Consensus 30 P~~P~~l~C~~~~~~~~~c~W~p~~~~~~~~~~~y~l~Y~~~~~~~~~~~~~~C~~~~~~~~~~C~~~~~~l~~~~~Y~~ 109 (236)
T 1axi_B 30 SGEPKFTKCRSPERETFSCHWTDEVHHGTKNEGPIQLFYTRRNTQEWTQEWKECPDYVSAGENSCYFNSSFTSIAIPYCI 109 (236)
T ss_dssp --CCCEEEEEBSSSSCEEEEECCC--------CSCEEEEEECC------CCEECSCSSTTCTTEEEECGGGCCSSSEEEE
T ss_pred CCCCcCCeEEeCCCCEEEEEecCCCCCCCCCCceEEEEEEeCCCCcCCCceeeCCCCCCCCCEEEEECCcCCcccceEEE
Confidence 445678989988999999999987 32322 5899999876532 2233322111 12334566678999999999
Q ss_pred EEEEeecceeCCCCCceEEeccCCCCCCCCceeEEE--EecC----cEEEEEeeCCCCC-CCCe-eeeEEEEEEEecCCc
Q psy574 616 FLVPFFGSVDGKPSNLRAVRTLECEPSGVPQLTDPV--LLNA----TSVLLKWKPPPVG-THNG-VIRTYQIIVGGGNNS 687 (977)
Q Consensus 616 ~V~a~n~~g~g~~s~~~~~~T~~~~P~~~P~~v~~~--~~~~----~sv~v~W~~p~~~-~~ng-~i~~Y~v~~~~~~~~ 687 (977)
+|.| | .+ .+....+.....+.+.||.++.+. ..+. ..+.|+|++|... ..+| .++.|+|+|+..+..
T Consensus 110 ~V~a-N-~~---~s~~~~~~~~~~v~p~pP~~l~~~~~~~s~~~~~~~l~lsW~~P~~~~~~~g~~~l~Yevry~~~~~~ 184 (236)
T 1axi_B 110 KLTS-N-GG---TVDEKCFSVDEIVQPDPPIALNWTLLNVSLTGIHADIQVRWEAPRNADIQKGWMVLEYELQYKEVNET 184 (236)
T ss_dssp EEEE-T-TE---EEEEEEEEGGGGBCCCCCEEEEEEECSCCSSCSEEEEEEEEECCTTSCTTTTSCCEEEEEEEEETTCS
T ss_pred EEEE-C-Cc---cCCCeEeecccccccCCCcccEEEEEecccCCCCceEEEEECCCCCccccCCceeeEEEEEEEECCCC
Confidence 9999 7 33 334456666666666799999644 3222 3599999999533 4477 789999999987643
Q ss_pred ceEEEEecCCcCeEEecCCCCCceEEEEEEEEcCCC--cCCCCCceEEeecC
Q psy574 688 ALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAG--TGPYSRPALLSLTS 737 (977)
Q Consensus 688 ~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~~G--~g~~S~~~~~~t~~ 737 (977)
.+.... ....+++.|.+|+||+.|.|+|||.+.+| .|.||+++.|+|+.
T Consensus 185 ~w~~~~-~~~~~~~~l~~L~p~t~Y~vqVRa~~~~gg~ws~WS~~~~~~~p~ 235 (236)
T 1axi_B 185 KWKMMD-PILTTSVPVYSLKVDKEYEVRVRSKQRNSGNYGEFSEVLYVTLPQ 235 (236)
T ss_dssp SCEECC-CBSSSEEEEEEEETTSCEEEEEEEEETTSSCCCCCCCCEEECCCC
T ss_pred ceEEEe-ccCCCEEEEeccCCCCEEEEEEEEEECCCCCcCCCCCCEEEECCC
Confidence 333222 23568999999999999999999999999 89999999998764
No 333
>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A
Probab=99.69 E-value=2.8e-16 Score=164.44 Aligned_cols=171 Identities=16% Similarity=0.229 Sum_probs=125.3
Q ss_pred EEeCCCceEEeCCCeEEEEEEecccCceEEEEEECC--ee----------------CCCCceEEec----cceEEEccCc
Q psy574 102 IIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLG--SA----------------MPEDRMSVLP----SRSLQLSDVR 159 (977)
Q Consensus 102 ~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~--~~----------------l~~~~~~~~~----~~~L~I~~v~ 159 (977)
+...|..+.+.+|++++|.|. .+.|.+.|.|+|+. .. ...+++.+.. ..+|.|.+++
T Consensus 3 v~q~p~~~~v~~G~~v~L~C~-~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~ 81 (238)
T 2p1y_A 3 VTQSPRNKVAVTGGKVTLSCN-QTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENFSLILELAT 81 (238)
T ss_dssp EEEECSEEEEETTCCEEEEEE-ECSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEECCSSSBCEEEESSCC
T ss_pred ceECccceEEeCCCEEEEEee-cCCCCccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEccCCceEEEEEecCC
Confidence 455677889999999999999 67888999999962 11 1134555542 3579999999
Q ss_pred cCCCeEEEEEEEeCCee-----EEEEEEEEEeeCC------------eEEecCCCcEEeeCCeEEEEEEEecCCCCeEEE
Q psy574 160 LEDAGEYVCEAENAVGK-----ISASATLTVQMAP------------IVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFW 222 (977)
Q Consensus 160 ~~D~G~Y~C~a~n~~g~-----~~~~~~L~V~~~p------------~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W 222 (977)
.+|+|.|+|.|.|..+. ....+.|.|...+ .+...|....+.+|++++|.|.+.+.|.+.+.|
T Consensus 82 ~~DsG~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~~~p~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~W 161 (238)
T 2p1y_A 82 PSQTSVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQSPQSLTVWEGETAILNCSYENSAFDYFPW 161 (238)
T ss_dssp GGGCEEEEEEEEC------CEEECCCEEEEEECCCHHHHHHHHHHHTCCEEECSEEEEETTSCEEEEEECCCTTCCEEEE
T ss_pred cccCeeEEEEEEeCCCccccceeCCCeEEEEeccCCCCcCCcccceeeEEccCceEEEeCCCeEEEEEEEecCCCCcEEE
Confidence 99999999999987542 1234577887543 556667888899999999999999999999999
Q ss_pred EEcCe----eeeec-C----CCccccEEEEE-ccCCceEEEEeecccCCCCeEEEEEEEcCC
Q psy574 223 MLEGN----RSLIY-P----GDRVDNIQAEI-TSDGMNLLKIQNVSRTAAPLIILCLGVNAA 274 (977)
Q Consensus 223 ~~~g~----~~~~~-~----~~~~~~~~~~~-~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~ 274 (977)
+|++. ..... . .....++.+.. ...+...|.|.+++.+|+|.|+ |.|.|..
T Consensus 162 ~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~-C~a~n~~ 222 (238)
T 2p1y_A 162 YQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYF-CAAIDTN 222 (238)
T ss_dssp EEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEETTCCGGGCEEEE-EEEEETT
T ss_pred EEECCCCCCEEEEEEccCCCcccCCceEEEecCCCCeEEEEEcCCCHHHCEEEE-EEEeeCC
Confidence 99742 11110 0 01245666653 2234469999999999999999 9999974
No 334
>1wj3_A KIAA1496 protein; beta sandwich, PANG, structural genomics, riken structural genomics/proteomics initiative, RSGI, neuropeptide; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=99.69 E-value=1.3e-16 Score=146.03 Aligned_cols=112 Identities=18% Similarity=0.224 Sum_probs=96.9
Q ss_pred eeCCCCCceEEeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCcceEEEEecCCcCeEEe
Q psy574 624 VDGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLL 703 (977)
Q Consensus 624 g~g~~s~~~~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~l 703 (977)
|.|++|..+.++|.+++|+.+|.++++.. +.++|.|+|++|+....||.|++|+|+|+..+.... ..+..+.+.+.+
T Consensus 1 G~G~~S~~v~~~T~e~~P~~~P~~v~~~~-~~~si~l~W~~p~~~~~ng~i~gY~v~y~~~~~~~~--~~~~~~~~~~~~ 77 (117)
T 1wj3_A 1 GSSGSSGTVNVTTKKTPPSQPPGNVVWNA-TDTKVLLNWEQVKAMENESEVTGYKVFYRTSSQNNV--QVLNTNKTSAEL 77 (117)
T ss_dssp CCCCCCCCCCCCCSCCCCCCCCCSCBCCE-ETTEEEEECCCCCCCSSSCCEEEEEEEEEESSCSSC--EEEEESSSEEEE
T ss_pred CcCCCCCCEEEEecCCCCCCCCccEEEEE-eCCEEEEEEcCCCccccCCceeEEEEEEEECCCCCC--eEEeCCCcEEEE
Confidence 56889999999999999999999999877 888999999999877899999999999998653222 233345678888
Q ss_pred cCCCCCceEEEEEEEEcCCCcCCCCCceEEeecCCC
Q psy574 704 TNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGP 739 (977)
Q Consensus 704 ~~L~p~t~Y~~~V~A~~~~G~g~~S~~~~~~t~~~~ 739 (977)
. |.+++.|.|+|+|+|.+|.|++|+++.++|.+..
T Consensus 78 ~-L~~~t~Y~~~V~A~n~~G~Gp~S~~v~~~T~~~v 112 (117)
T 1wj3_A 78 V-LPIKEDYIIEVKATTDGGDGTSSEQIRIPRITSS 112 (117)
T ss_dssp E-CCCSSCEEEEEEEEESSCCCCBCCCEEECCCCCC
T ss_pred E-CCCCCEEEEEEEEECCCccCCCCCCEEEEcCCCC
Confidence 8 9999999999999999999999999999998755
No 335
>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*
Probab=99.69 E-value=3.5e-16 Score=160.58 Aligned_cols=172 Identities=16% Similarity=0.238 Sum_probs=128.4
Q ss_pred CeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCe--eC-------------CCCceEEe---ccceEEEccCccC
Q psy574 100 PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGS--AM-------------PEDRMSVL---PSRSLQLSDVRLE 161 (977)
Q Consensus 100 P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~--~l-------------~~~~~~~~---~~~~L~I~~v~~~ 161 (977)
|.+...|..+.+.+|++++|.|.+.+.|.+.+.|+|.+. .. ..+++.+. .+.+|.|.+++.+
T Consensus 2 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~ 81 (213)
T 3r06_A 2 IQMTQSPSSLPASLGDRVTINCQASQDISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSGSGRDSSFTISSLESE 81 (213)
T ss_dssp CCEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred CeeEeCCCEEEecCCCcEEEEEEeCCCcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEeccCCEEEEEECCCCcc
Confidence 445666788899999999999999988899999998421 11 12455544 3348999999999
Q ss_pred CCeEEEEEEEeCCee-EEEEEEEEE---eeCCeEEecCCCcEEeeCCeEEEEEEEecCCC--CeEEEEEcCeeeeec---
Q psy574 162 DAGEYVCEAENAVGK-ISASATLTV---QMAPIVRERPSDLRLEVGRDAVFLCGIEGSPP--PSTFWMLEGNRSLIY--- 232 (977)
Q Consensus 162 D~G~Y~C~a~n~~g~-~~~~~~L~V---~~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~--~~i~W~~~g~~~~~~--- 232 (977)
|+|.|+|.|.|..+. ....+.|.| ..+|.+...+....+..|+.++|.|.+.+.++ +.+.|+++|..+...
T Consensus 82 D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~~~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~ 161 (213)
T 3r06_A 82 DIGSYYCQQYYNYPWTFGPGTKLEIKRADAKPTVSIFPPSSEQLGTGSATLVCFVNNFYPKDINVKWKVDGSEKRDGVLQ 161 (213)
T ss_dssp GCSEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEE
T ss_pred cCEEEEEecccCCceEEcCCceEEEeccCCCceeeeeCCCceecCCCCcEEEEEEeeecCCceEEEEEECCcccCCceEe
Confidence 999999999987543 345567887 57788887777777778999999999988654 389999999876421
Q ss_pred ----CCCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCcee
Q psy574 233 ----PGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDL 278 (977)
Q Consensus 233 ----~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~ 278 (977)
.....+.+.+. +.|.|.....+|.|.|+ |.|.|......
T Consensus 162 ~~~~~~~~~g~~~~~------s~l~i~~~~~~d~g~Yt-C~v~n~~~~~~ 204 (213)
T 3r06_A 162 SVTDQDSKDSTYSLS------STLSLTKADYERHNLYT-CEVTHKTSTAA 204 (213)
T ss_dssp EECCCCTTTCCEEEE------EEEEEEHHHHHTCCEEE-EEEEETTCSSC
T ss_pred ccCceeCCCCcEEEE------EEEEeCHHHhccCCeEE-EEEEecccCcc
Confidence 00112223222 37889999999999999 99999875543
No 336
>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1
Probab=99.69 E-value=4e-16 Score=164.28 Aligned_cols=179 Identities=18% Similarity=0.302 Sum_probs=129.9
Q ss_pred CCceEEeCCCeEEEEEEecccC--ceEEEEEECCe--e------------------CCCCceEEec-----cceEEEccC
Q psy574 106 PKDTTVSASSIIVFECSVGGDA--VLTVHWKRLGS--A------------------MPEDRMSVLP-----SRSLQLSDV 158 (977)
Q Consensus 106 p~~~~v~~G~~v~l~C~v~g~p--~~~i~W~k~~~--~------------------l~~~~~~~~~-----~~~L~I~~v 158 (977)
|....+.+|++++|.|.+.|.| .+.|.|+|+.. . ...+|+.+.. ..+|.|.++
T Consensus 9 p~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v 88 (247)
T 2ghw_B 9 SGGGVVQPGKSLRLSCAASGFAFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSL 88 (247)
T ss_dssp ECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred cCCEEEecCCcEEEEEEeccccCCCceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCCCCEEEEEECcC
Confidence 3457899999999999998876 67899999531 1 1124665543 247999999
Q ss_pred ccCCCeEEEEEEEeCCee--EEEEEEEEEeeC---------------CeEEecCCCcEEeeCCeEEEEEEEecCCCCeEE
Q psy574 159 RLEDAGEYVCEAENAVGK--ISASATLTVQMA---------------PIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTF 221 (977)
Q Consensus 159 ~~~D~G~Y~C~a~n~~g~--~~~~~~L~V~~~---------------p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~ 221 (977)
+.+|+|.|+|.|.|..+. ....+.|.|..+ +.+...+....+.+|++++|.|.+.+.+.+.+.
T Consensus 89 ~~~D~G~Y~C~~~n~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~ 168 (247)
T 2ghw_B 89 RAEDTAVYYCARDRSYYLDYWGQGTLVTVSSGGGGSGGGGSGGGGSETTLTQSPATLSLSPGERATLSCRASQSVRSNLA 168 (247)
T ss_dssp CGGGCEEEEEEEEETTEEEEECCCEEEEECSCC------------CCCCEEEECSEEEECTTSCEEEEEEESSCCTTCEE
T ss_pred CHHHCEEEEEeeeccCCccccCCceEEEEecccccccccccCCCCcceEEEccCCEEEecCCCcEEEEEEeCCCccceEE
Confidence 999999999999998432 334567888753 345556777789999999999999999989999
Q ss_pred EEE--cCeeee--ec-----CCCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCcee-EEEEEEEE
Q psy574 222 WML--EGNRSL--IY-----PGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDL-ARASLTVS 286 (977)
Q Consensus 222 W~~--~g~~~~--~~-----~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~-~~~~l~V~ 286 (977)
|+| ++..+. .. ......++..... ....+|.|.+++.+|+|.|+ |.|.|...... ..+.|.|.
T Consensus 169 W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~L~I~~v~~~D~G~Y~-C~a~~~~~~~~g~~t~l~V~ 241 (247)
T 2ghw_B 169 WYQQKPGQAPRPLIYDASTRATGIPDRFSGSGS-GTDFTLTISRLEPEDFAVYY-CQQRSNWPPTFGQGTKVEVK 241 (247)
T ss_dssp EEEECTTSCCEEEEETTTEECTTCCTTEEEECS-SSEEEEEECSCCGGGCEEEE-EEECSSSSCEECCCEEEEEC
T ss_pred EEEECCCCCcEEEEEEeccCCCccCCCEEEecC-CCeEEEEECcCCHHHCEEEE-EEEccCCCceEcCCEEEEEC
Confidence 999 454321 10 0112456665432 34468999999999999999 99998654332 33466665
No 337
>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H
Probab=99.69 E-value=6.2e-16 Score=160.07 Aligned_cols=170 Identities=15% Similarity=0.221 Sum_probs=120.2
Q ss_pred ecccceEEeCCCcEEEEEECCCCCC--CCeEEEEeCC--E---Eee------------cCCCceEEEec-----CcEEEE
Q psy574 10 VQPKSQRVAAGDTALLECGPPRGHP--EPTLVWKKNG--H---PID------------FENSKRLRLVD-----GTNLAI 65 (977)
Q Consensus 10 ~~p~~~~v~~G~~v~L~C~~~~g~P--~~~v~W~k~g--~---~l~------------~~~~~r~~~~~-----~g~L~I 65 (977)
.+|..+.+.+|++|+|.|.+ .+.+ .+.|.|+|+. . .+. ....+|+.+.. +.+|.|
T Consensus 5 ~qp~~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I 83 (223)
T 1dee_B 5 VESGGGVVQPGKSLRLSCAA-SGFTFSGYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNSKNTLYLQM 83 (223)
T ss_dssp EEECCCEECTTCCEEEEEEE-ESSCGGGSCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEETTTTEEEEEE
T ss_pred EcCCCEEEcCCCcEEEEEEe-cCcccCCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecCCCCEEEEEE
Confidence 45678999999999999998 5544 4789999843 2 120 11246777653 247999
Q ss_pred cCCCCCCCeEEEEEEEecCc----e-eeeEeEEEEEEc----CCeEEeCCCceEEeCCCeEEEEEEeccc-Cce-EEEEE
Q psy574 66 QDSRKTDDGRYQCVVKNVAG----T-RESTDAVLRVLV----KPYIIRGPKDTTVSASSIIVFECSVGGD-AVL-TVHWK 134 (977)
Q Consensus 66 ~~v~~~D~G~Y~C~a~n~~g----~-~~s~~~~l~V~~----~P~~~~~p~~~~v~~G~~v~l~C~v~g~-p~~-~i~W~ 134 (977)
.+++.+|+|.|.|.+.+..| . .....+.|.|.. +|.+...+....+.+|+.++|.|.+.|. |.+ .+.|+
T Consensus 84 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~ 163 (223)
T 1dee_B 84 NSLRAEDTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSSGSASAPTLFPLVSCENSNPSSTVAVGCLAQDFLPDSITFSWK 163 (223)
T ss_dssp CSCCGGGCEEEEEEEESSSSTTCCEEEECCCEEEEECSSCCBCCEEEEEECTTCCCSSSEEEEEEEEEEEBSSCCEEEEE
T ss_pred CCCCHHHCEEEEEEEeccccCcccceeecCcEEEEEccCCCCCCEEEEecCCcccCCCCcEEEEEEEEEEeCCCeEEEeE
Confidence 99999999999999998653 1 122345788873 4555432222345789999999999876 776 99999
Q ss_pred E-CCeeCCCC--------ceEEeccceEEEccCcc--CCCeEEEEEEEeCCeeEEEE
Q psy574 135 R-LGSAMPED--------RMSVLPSRSLQLSDVRL--EDAGEYVCEAENAVGKISAS 180 (977)
Q Consensus 135 k-~~~~l~~~--------~~~~~~~~~L~I~~v~~--~D~G~Y~C~a~n~~g~~~~~ 180 (977)
+ ++..+... .........|.|..... +|.|.|+|.|.|..+.....
T Consensus 164 ~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~y~C~v~n~~~~~~~~ 220 (223)
T 1dee_B 164 YKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVAQGTNEHVVCKVQHPNGNKEKD 220 (223)
T ss_dssp ETTSCBCSCEEECCCEEETTEEEEEEEEEEECTTTTSTTCCEEEEEEECTTCCEEEE
T ss_pred ccCCCccceeEECCccccCCeEEEEEEEEEcHHHhccCCCCEEEEEEEeCCCCCccc
Confidence 9 88877540 00111234688887776 88999999999998765443
No 338
>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E
Probab=99.69 E-value=1.8e-16 Score=166.83 Aligned_cols=169 Identities=14% Similarity=0.223 Sum_probs=123.9
Q ss_pred cceecccceEEeCCCcEEEEEECCCCCCCCeEEEEe----------------CCEEeec-CCCceEEEec----CcEEEE
Q psy574 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKK----------------NGHPIDF-ENSKRLRLVD----GTNLAI 65 (977)
Q Consensus 7 ~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k----------------~g~~l~~-~~~~r~~~~~----~g~L~I 65 (977)
.+...|..+.+.+|++++|.|.+ .+.|.+.|.|+| ++..+.. ....|+.+.. +.+|.|
T Consensus 3 ~v~~~p~~~~v~~G~~v~L~C~~-~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I 81 (246)
T 4dzb_B 3 VVSQHPSWVISKSGTSVKIECRS-LDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTV 81 (246)
T ss_dssp CEEEECSEEEEETTSCEEEEEEE-SSSCCCSEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEEETTEEEEEE
T ss_pred ccEECCcEEEEeCCCcEEEEeEe-cCCCceEEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEecCCCEEEEEE
Confidence 46778888999999999999998 677899999999 3333321 1225777653 237999
Q ss_pred cCCCCCCCeEEEEEEEecCc---eeeeEeEEEEEEc------CCeEE-eCCCceEEeCCCeEEEEEEecccCce--EEEE
Q psy574 66 QDSRKTDDGRYQCVVKNVAG---TRESTDAVLRVLV------KPYII-RGPKDTTVSASSIIVFECSVGGDAVL--TVHW 133 (977)
Q Consensus 66 ~~v~~~D~G~Y~C~a~n~~g---~~~s~~~~l~V~~------~P~~~-~~p~~~~v~~G~~v~l~C~v~g~p~~--~i~W 133 (977)
.+++.+|+|.|+|.+.+..+ ......+.|.|.. +|.+. ..|....+.+|+.++|.|.+.|.+++ .+.|
T Consensus 82 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~i~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W 161 (246)
T 4dzb_B 82 TSAHPEDSSFYICSARTSGDFGEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSW 161 (246)
T ss_dssp CSCCGGGCEEEEEEECCSSGGGCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEE
T ss_pred CCCCHHHCEEEEEEEecCCCCcceEEcCCEEEEEecCCCcccCCceEeecCCchhccCCCcEEEEEEEccCcCCceEEEE
Confidence 99999999999999987543 1223445777774 45543 45555567779999999999886544 8999
Q ss_pred EECCeeCCCCceEEe---------cc------ceEEEccCccCC-CeEEEEEEEeCCee
Q psy574 134 KRLGSAMPEDRMSVL---------PS------RSLQLSDVRLED-AGEYVCEAENAVGK 176 (977)
Q Consensus 134 ~k~~~~l~~~~~~~~---------~~------~~L~I~~v~~~D-~G~Y~C~a~n~~g~ 176 (977)
+|++..+........ .+ ..|.|.....+| .|.|+|.|.|....
T Consensus 162 ~k~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~~~ 220 (246)
T 4dzb_B 162 WVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLS 220 (246)
T ss_dssp EETTEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBC
T ss_pred EECCEECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCeEEEEEEecCCC
Confidence 999988865322110 12 348888888888 99999999997543
No 339
>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.68 E-value=9.8e-17 Score=169.24 Aligned_cols=216 Identities=13% Similarity=0.140 Sum_probs=127.8
Q ss_pred EcCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCceE-----EeccceEEEccCccCCCeEEEEEEE
Q psy574 97 LVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMS-----VLPSRSLQLSDVRLEDAGEYVCEAE 171 (977)
Q Consensus 97 ~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~-----~~~~~~L~I~~v~~~D~G~Y~C~a~ 171 (977)
..+|.+...|. ..+.+|++++|.|.+.+ +.+.+.|+|++..+...... ...+..|.|.+++.+|+|.|+|.+.
T Consensus 5 ~~kP~i~~~P~-~~V~~G~~VtL~C~~~~-~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~ 82 (257)
T 1b6u_A 5 HRKPSLLAHPG-PLVKSEETVILQCWSDV-RFQHFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCYGS 82 (257)
T ss_dssp CCCCEECCBSC-SEEESSCCEEEEEEESS-CCSEEEEEEESTTCEEEEEECBCCTTCEEEEEEECSCCTTTCEEEEEEEE
T ss_pred CCCCEEEEcCC-CEecCCCCEEEEEecCC-CCcEEEEEECCCCCCcceeeeeccCCCceEEEEeecCCcccCEEEEEeEe
Confidence 35677777775 67899999999999974 46789999998765321100 1135689999999999999999998
Q ss_pred eCCe-----eEEEEEEEEEee---CCeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCccccEEEE
Q psy574 172 NAVG-----KISASATLTVQM---APIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAE 243 (977)
Q Consensus 172 n~~g-----~~~~~~~L~V~~---~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~ 243 (977)
+... ..+..+.|.|.. +|.+...|. ..+.+|++++|.|.+.+.+ +.+.|+|+|..+..... +. ..
T Consensus 83 ~~~~~~~~s~~S~~~~L~V~~~~~~P~l~~~p~-~~V~~G~~vtL~C~~~~~~-~~~~w~k~g~~~~~~~~----~~-~~ 155 (257)
T 1b6u_A 83 VTHSPYQLSAPSDPLDIVITGLYEKPSLSAQPG-PTVLAGESVTLSCSSRSSY-DMYHLSREGEAHERRFS----AG-PK 155 (257)
T ss_dssp CSSCTTSCCCCCCCEEEEEECSSCCCEEECSSC-TTCBTTCEEEEEEECSSCC-SEEEEEETTSSCEECCB----CB-CC
T ss_pred ccCCCccccccCCCEEEecccCCCCcceEccCC-CccCCCCEEEEEEeCCCCC-cEEEEEECCcccCcccc----cc-cc
Confidence 6431 235667788874 456666665 4688999999999998764 68999999976642110 00 00
Q ss_pred EccCCceEEEEeecccCCCCeEEEEEEEcCCC-----ceeEEEEEEEECCCCCCCCeEEe-CCCceeecCCCcEEEEEEE
Q psy574 244 ITSDGMNLLKIQNVSRTAAPLIILCLGVNAAG-----SDLARASLTVSGPDPNPPPVILF-GPANQTLPLRSEARLRCQV 317 (977)
Q Consensus 244 ~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g-----~~~~~~~l~V~~~~~~~pp~i~~-~p~~~~v~~g~~~~L~C~~ 317 (977)
........|.|.+++ |+|.|+ |.|.+... ..+....|.|.+ +|.+.. .|.......|..+.|.|.+
T Consensus 156 ~~~~~~~~l~I~~v~--D~G~Y~-C~a~~~~~p~~~s~~S~pl~L~V~g-----~p~~~~p~~~~~~~~~g~~~~l~~~~ 227 (257)
T 1b6u_A 156 VNGTFQADFPLGPAT--HGGTYR-CFGSFRDSPYEWSNSSDPLLVSVTG-----NPSNSWPSPTEPSSETGNPRHLHAAA 227 (257)
T ss_dssp SSSCCBEEEEEEECC--SCEEEE-EEEECSSCTTBBCCCCCCEEECCBC-----CC------------------------
T ss_pred cCCceeEEEEecccc--cCEEEE-EEEEcCCCCcccccCCCCEEEEEec-----cCCCCCCCCcccCccCCCeEEEEEEE
Confidence 000013489999998 999999 99997643 224456777777 333332 2223345678889999887
Q ss_pred cc-CceEEEEECC
Q psy574 318 RG-EGSVQWWRGE 329 (977)
Q Consensus 318 ~~-~p~i~W~~~g 329 (977)
-. ...|.|...+
T Consensus 228 ~~~~~~~~~~~~~ 240 (257)
T 1b6u_A 228 EQKLISEEDLNLD 240 (257)
T ss_dssp -------------
T ss_pred cchHHHHHHhhhh
Confidence 77 6678886543
No 340
>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H
Probab=99.68 E-value=5.1e-16 Score=164.44 Aligned_cols=182 Identities=19% Similarity=0.272 Sum_probs=135.2
Q ss_pred eCCCceEEeCCCeEEEEEEecccC--ceEEEEEECC--eeC------------------CCCceEEec-----cceEEEc
Q psy574 104 RGPKDTTVSASSIIVFECSVGGDA--VLTVHWKRLG--SAM------------------PEDRMSVLP-----SRSLQLS 156 (977)
Q Consensus 104 ~~p~~~~v~~G~~v~l~C~v~g~p--~~~i~W~k~~--~~l------------------~~~~~~~~~-----~~~L~I~ 156 (977)
..|....+.+|++++|.|.+.+.| .+.|.|+|++ ..+ ..+|+.+.. ..+|.|.
T Consensus 5 ~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~ 84 (256)
T 1nqb_A 5 QQSGAELVKPGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKPSSTAYMQLS 84 (256)
T ss_dssp EECCCEEECTTCCEEEEEEECSSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred ECCCCeeecCCCcEEEEEEeccccCCCceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEecCCCEEEEEEC
Confidence 346677899999999999998775 6799999952 211 124665543 2489999
Q ss_pred cCccCCCeEEEEEEEeCCe-----eEEEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEEecCCCC-----eEEEEE--
Q psy574 157 DVRLEDAGEYVCEAENAVG-----KISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPP-----STFWML-- 224 (977)
Q Consensus 157 ~v~~~D~G~Y~C~a~n~~g-----~~~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~-----~i~W~~-- 224 (977)
+++.+|+|.|+|.+.|..| .....+.|.|..+|.+...|....+.+|++++|.|.+.+.+.+ .+.|+|
T Consensus 85 ~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~ 164 (256)
T 1nqb_A 85 SLTSEDSAVYYCARYDYYGSSYFDYWGQGTTVTVSSDIELTQTPLSLPVSLGDQASISCRSSQSIVHSNGNTYLEWYLQK 164 (256)
T ss_dssp SCCGGGCEEEEEEECCTTSSSSCSEECCCEEEEECCCCCEEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEEC
T ss_pred cCChhhCEEEEEEEeeccCccceeEEcCceeeeecccccEEecCcEEEEecCCcEEEEeEecCcccccccceEEEEEEEC
Confidence 9999999999999999855 2334578889888888888888899999999999999998875 999999
Q ss_pred cCeeee--ecC-----CCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCce-eEEEEEEEEC
Q psy574 225 EGNRSL--IYP-----GDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSD-LARASLTVSG 287 (977)
Q Consensus 225 ~g~~~~--~~~-----~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~-~~~~~l~V~~ 287 (977)
++..+. ... .....++..... .....|.|.+++.+|+|.|+ |.|.|..... ...+.|.|..
T Consensus 165 ~g~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~L~I~~v~~~DsG~Y~-C~a~~~~~~~fg~gt~l~V~~ 233 (256)
T 1nqb_A 165 PGQSPKLLIYKVSNRFSGVPDRFSGSGS-GTDFTLKISRVEAEDLGVYY-CFQGSHVPYTFGGGTKLEIKR 233 (256)
T ss_dssp TTSCEEEEEETTTEECTTCCTTEEEEEE-TTEEEEEESSCCGGGCEEEE-EEECSSSSCEECCCEEEEECC
T ss_pred CCCCcEEEEEEeCCCCCccCCcEEEEcc-CCEEEEEECCCChHHCEEEE-EEEccCCceEECCCEEEEEEC
Confidence 554331 110 112356665432 34468999999999999999 9999864432 2335677764
No 341
>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A
Probab=99.68 E-value=3.3e-16 Score=159.25 Aligned_cols=166 Identities=13% Similarity=0.167 Sum_probs=120.4
Q ss_pred EcCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCCce----E-EeccceEEEccCccCCCeEEEEEEE
Q psy574 97 LVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRM----S-VLPSRSLQLSDVRLEDAGEYVCEAE 171 (977)
Q Consensus 97 ~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~----~-~~~~~~L~I~~v~~~D~G~Y~C~a~ 171 (977)
..+|.+...|. ..+.+|++++|.|.+.+ +.+.+.|+|++..+..... . ...++.|.|.+++.+|+|.|+|.+.
T Consensus 6 ~~~P~i~~~p~-~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~ 83 (201)
T 1nkr_A 6 HRKPSLLAHPG-PLVKSEETVILQCWSDV-MFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGS 83 (201)
T ss_dssp -CCCEEEEESC-SEEETTCCEEEEEEESS-CCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEE
T ss_pred CCCCeEEEEcC-CccCCCCcEEEEEeccC-CCCEEEEEECCCcCCcceeeeecCCCCceEEEEeccCCcccCeEEEEeEe
Confidence 45677777775 67899999999999974 6789999999886642111 0 0135789999999999999999998
Q ss_pred eCCe-----eEEEEEEEEEee---CCeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCccccEEEE
Q psy574 172 NAVG-----KISASATLTVQM---APIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAE 243 (977)
Q Consensus 172 n~~g-----~~~~~~~L~V~~---~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~ 243 (977)
|... ..+..+.|.|.. +|.+...|. ..+.+|+.++|.|.+.+ +.+.+.|+|+|..+... ......
T Consensus 84 ~~~~~~~~~~~s~~~~l~V~~~~~~p~i~~~p~-~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~-----~~~~~~ 156 (201)
T 1nkr_A 84 VTHSPYQVSAPSDPLDIVIIGLYEKPSLSAQPG-PTVLAGENVTLSCSSRS-SYDMYHLSREGEAHERR-----LPAGPK 156 (201)
T ss_dssp BTTBTTCCCCCCCCEEEEEECSSCCCEEEEESC-SEECTTCEEEEEEEESS-CCSEEEEEETTCSSCEE-----EECEEE
T ss_pred cCCCCccccCCCCCEEEEeeccCCCCceecCCC-CccCCCCeEEEEEeCCC-CCceEEEEECCcccCcc-----cccccc
Confidence 7531 234567788874 466766665 57899999999999986 56789999999765321 111111
Q ss_pred EccCCceEEEEeecccCCCCeEEEEEEEcCC
Q psy574 244 ITSDGMNLLKIQNVSRTAAPLIILCLGVNAA 274 (977)
Q Consensus 244 ~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~ 274 (977)
........|.|.+++ |+|.|+ |.|.+..
T Consensus 157 ~~~~~~~~L~i~~v~--d~G~Y~-C~a~~~~ 184 (201)
T 1nkr_A 157 VNGTFQADFPLGPAT--HGGTYR-CFGSFHD 184 (201)
T ss_dssp ETTEEEEEEEEEECC--SCEEEE-EEEEETT
T ss_pred cCCceEEEEEeCCcC--CCeeEE-EEEEcCC
Confidence 110013489999998 999999 9998753
No 342
>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*
Probab=99.68 E-value=4.1e-16 Score=164.60 Aligned_cols=172 Identities=14% Similarity=0.260 Sum_probs=125.3
Q ss_pred CeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCee---------------CCCCceEEec---cceEEEccCccC
Q psy574 100 PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSA---------------MPEDRMSVLP---SRSLQLSDVRLE 161 (977)
Q Consensus 100 P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~---------------l~~~~~~~~~---~~~L~I~~v~~~ 161 (977)
..+...|..+.+.+|++++|.|.+.+.|.+.+.|+|+... ...+++.... +.+|.|.+++.+
T Consensus 5 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~ 84 (250)
T 3esu_F 5 IVLIQSTSSLSASLGDRVTISCRASQDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSGSGTDYSLTISNLEQE 84 (250)
T ss_dssp CCEECSCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred eeEEecCCEEEeeCCCcEEEEEEecccCCceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeCCCCEEEEEEccCChh
Confidence 3456667788899999999999999999999999996310 0124444332 237999999999
Q ss_pred CCeEEEEEEEeCCee-EEEEEEEEEeeC-------------------CeEEecCCCcEEeeCCeEEEEEEEecCC--CCe
Q psy574 162 DAGEYVCEAENAVGK-ISASATLTVQMA-------------------PIVRERPSDLRLEVGRDAVFLCGIEGSP--PPS 219 (977)
Q Consensus 162 D~G~Y~C~a~n~~g~-~~~~~~L~V~~~-------------------p~~~~~p~~~~v~~G~~v~L~C~~~g~p--~~~ 219 (977)
|+|.|+|.+.|..+. ......|.|..+ +.+...+....+.+|++++|.|.+.+.+ .+.
T Consensus 85 D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~ 164 (250)
T 3esu_F 85 DIGTYFCQQGNTLPWTFGGGTKLEIRRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPELVKPGASVKISCKDSGYAFSSSW 164 (250)
T ss_dssp GCEEEEEEECSSSSCEECCCEEEEEC------------------------CEECCCEEECTTCCEEEEEECCSTTGGGSE
T ss_pred hCEEEEEEEeeCCCceECCCEEEEEECCCCcccccccccccccCcccceEEecCCceEEcCCceEEEEEEecCCcccCCE
Confidence 999999999987654 334456777653 3344556777899999999999998877 789
Q ss_pred EEEEEc--Ceeeeec------------CCCccccEEEEEcc-CCceEEEEeecccCCCCeEEEEEEEc
Q psy574 220 TFWMLE--GNRSLIY------------PGDRVDNIQAEITS-DGMNLLKIQNVSRTAAPLIILCLGVN 272 (977)
Q Consensus 220 i~W~~~--g~~~~~~------------~~~~~~~~~~~~~~-~g~s~L~I~~v~~~d~G~Y~~C~a~n 272 (977)
+.|+|+ +..+... ......|+.+.... ....+|.|.+++.+|+|.|. |.|.+
T Consensus 165 v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~-C~~~~ 231 (250)
T 3esu_F 165 MNWVKQRPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTADKSSSTAYMQLSSLTSVDSAVYF-CARSG 231 (250)
T ss_dssp EEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEE-EEEEC
T ss_pred EEEEEECCCCCcEEEEEEeccCCccccCccccceEEEEecCCCCeEEEEECCCCcccCEEEE-EEEec
Confidence 999998 4332111 11123677776542 34468999999999999999 99997
No 343
>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...
Probab=99.68 E-value=4e-16 Score=160.04 Aligned_cols=170 Identities=17% Similarity=0.234 Sum_probs=122.5
Q ss_pred EEeCCCceEEeCCCeEEEEEEecccC---ceEEEEEECC--eeC-------------CCCceEEec---cceEEEccCcc
Q psy574 102 IIRGPKDTTVSASSIIVFECSVGGDA---VLTVHWKRLG--SAM-------------PEDRMSVLP---SRSLQLSDVRL 160 (977)
Q Consensus 102 ~~~~p~~~~v~~G~~v~l~C~v~g~p---~~~i~W~k~~--~~l-------------~~~~~~~~~---~~~L~I~~v~~ 160 (977)
+.. |....+.+|++++|.|.+.+.| .+.|.|+|++ ..+ ..+|+.... ..+|.|.+++.
T Consensus 4 v~~-p~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~ 82 (212)
T 1q0x_L 4 VTQ-ESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGAQT 82 (212)
T ss_dssp EEE-CSEEEECTTCCEEEEEEESSSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred EEC-CCeEeecCCCCEEEEEEecccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEeeCCEEEEEECCCCc
Confidence 445 7788999999999999998877 4789999963 221 124555432 24899999999
Q ss_pred CCCeEEEEEEEeCCee-EEEEEEEEEe----eCCeEEecCCCcEEeeCCeEEEEEEEecCCCC--eEEEEEcCeeeeecC
Q psy574 161 EDAGEYVCEAENAVGK-ISASATLTVQ----MAPIVRERPSDLRLEVGRDAVFLCGIEGSPPP--STFWMLEGNRSLIYP 233 (977)
Q Consensus 161 ~D~G~Y~C~a~n~~g~-~~~~~~L~V~----~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~--~i~W~~~g~~~~~~~ 233 (977)
+|+|.|+|.+.|..+. ....+.|.|. .+|.+...+....+..|+.++|.|.+.+.+++ .+.|+++|..+...
T Consensus 83 ~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~- 161 (212)
T 1q0x_L 83 EDEAIYFCALWSNNKLVFGGGTKLTVLGQPKSSPTVTLFPPSSEELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTAG- 161 (212)
T ss_dssp GGCEEEEEEEECSSCEEECCCEEEEECCSCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTT-
T ss_pred cCCEEEEEEEecCchhhcCCCeEEEEecCCCCCCeeEEeCCCHHHccCCcEEEEEEEEEEeCCCeEEEEEECCEeCCCC-
Confidence 9999999999998764 2344567774 56777766655555679999999999885443 89999999876321
Q ss_pred CCccccEEEEEccCCc----eEEEEeecccCCCCeEEEEEEEcCCCce
Q psy574 234 GDRVDNIQAEITSDGM----NLLKIQNVSRTAAPLIILCLGVNAAGSD 277 (977)
Q Consensus 234 ~~~~~~~~~~~~~~g~----s~L~I~~v~~~d~G~Y~~C~a~n~~g~~ 277 (977)
..........+|. +.|.|..+..+|.|.|+ |.|.|.....
T Consensus 162 ---~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~-C~a~n~~~~~ 205 (212)
T 1q0x_L 162 ---METTQPSKQSNNKYMASSYLTLTARAWERHSSYS-CQVTHEGHSS 205 (212)
T ss_dssp ---EEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEE-EEEEETTEEE
T ss_pred ---eecCCceeCCCCCEEEEEEEEEcHHHccCCCcEE-EEEEeCCcce
Confidence 0000011111221 37999999999999999 9999987653
No 344
>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H
Probab=99.68 E-value=4.1e-16 Score=160.91 Aligned_cols=171 Identities=16% Similarity=0.248 Sum_probs=120.8
Q ss_pred eCCCceEEeCCCeEEEEEEecccC--ceEEEEEECC--eeC------------------CCCceEEec-----cceEEEc
Q psy574 104 RGPKDTTVSASSIIVFECSVGGDA--VLTVHWKRLG--SAM------------------PEDRMSVLP-----SRSLQLS 156 (977)
Q Consensus 104 ~~p~~~~v~~G~~v~l~C~v~g~p--~~~i~W~k~~--~~l------------------~~~~~~~~~-----~~~L~I~ 156 (977)
..|....+.+|++++|.|.+.+.+ .+.+.|+|++ ..+ ..+|+.+.. +.+|.|.
T Consensus 5 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~ 84 (219)
T 1c1e_H 5 VQSGPELKKPGETVKISCKASGYMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETSATTAYLQIN 84 (219)
T ss_dssp EECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGGGTEEEEEEC
T ss_pred eCCCCeEecCCCcEEEEEEEeCcccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEecCCCEEEEEEC
Confidence 345677899999999999998765 6899999973 322 124555542 3589999
Q ss_pred cCccCCCeEEEEEEEeCCe----eEEEEEEEEEeeC----CeEEecCCCcEEeeCCeEEEEEEEec-CCCC-eEEEEEcC
Q psy574 157 DVRLEDAGEYVCEAENAVG----KISASATLTVQMA----PIVRERPSDLRLEVGRDAVFLCGIEG-SPPP-STFWMLEG 226 (977)
Q Consensus 157 ~v~~~D~G~Y~C~a~n~~g----~~~~~~~L~V~~~----p~~~~~p~~~~v~~G~~v~L~C~~~g-~p~~-~i~W~~~g 226 (977)
+++.+|+|.|+|.+.|..+ .....+.|.|... |.+...+....+.+|+.++|.|.+.+ .|.| .|.|++++
T Consensus 85 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g 164 (219)
T 1c1e_H 85 NLKNEDMATYFCARGTTIVRAMDYWGQGTSLTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGS 164 (219)
T ss_dssp SCCGGGCEEEEEEEEETTTTEEEEECCCEEEEECCCCCBCCEEEEECCCSSSCCSSEEEEEEEEEEEBSSCCEEEEGGGT
T ss_pred CCCcccCEEEEEEEeccCcccceeecCceEEEEecCCCCCCeEEEecCccccccCCeEEEEEEcccccCCCeEEEEEeCC
Confidence 9999999999999999762 2234567888753 66655444445678999999999998 8988 99999998
Q ss_pred eeeeecCCC---ccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEE
Q psy574 227 NRSLIYPGD---RVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARAS 282 (977)
Q Consensus 227 ~~~~~~~~~---~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~ 282 (977)
..+...... ..+.+... +.|.|.... .|.|.|+ |.|.|..+.......
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~------s~L~i~~~~-~d~g~Y~-C~a~n~~~~~~~~~~ 215 (219)
T 1c1e_H 165 LSSGVHTFPAVLQSDLYTLS------SSVTVPSSP-RPSETVT-CNVAHPASSTKVDKK 215 (219)
T ss_dssp BCTTEEECCCEESSSCEEEE------EEEEEESSS-TTTSCCE-EEEEEGGGTEEEEEE
T ss_pred cccceEecCCcccCCeEEEE------EEEEEeccc-CCCCEEE-EEEEeCCCCccEEEe
Confidence 753211000 01222222 378885444 4669999 999999887654443
No 345
>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...
Probab=99.68 E-value=6.6e-16 Score=158.96 Aligned_cols=169 Identities=15% Similarity=0.210 Sum_probs=120.4
Q ss_pred CCceEEeCCCeEEEEEEe-cccC-ceEEEEEECCe--eC-------------CCCceEEec---cceEEEccCccCCCeE
Q psy574 106 PKDTTVSASSIIVFECSV-GGDA-VLTVHWKRLGS--AM-------------PEDRMSVLP---SRSLQLSDVRLEDAGE 165 (977)
Q Consensus 106 p~~~~v~~G~~v~l~C~v-~g~p-~~~i~W~k~~~--~l-------------~~~~~~~~~---~~~L~I~~v~~~D~G~ 165 (977)
|....+.+|++++|.|.+ .+.+ .+.|.|+|++. .+ ..+++.... ..+|.|.+++.+|+|.
T Consensus 7 p~~~~v~~G~~v~L~C~v~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~ 86 (216)
T 2xzc_L 7 PPSVSAAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSGTSATLGITGLQTGDEAD 86 (216)
T ss_dssp CSEEEECTTCCEEEEEECCTTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCEE
T ss_pred CCcEEecCCCeEEEEEEeecCCCCCCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEeccCCEEEEEECCCCcccCEE
Confidence 677889999999999995 4443 57899999642 11 124555442 3489999999999999
Q ss_pred EEEEEEeCCe--eEEEEEEEEEe---eCCeEEecCCCcEEeeCCeEEEEEEEec-CCCC-eEEEEEcCeeeeec------
Q psy574 166 YVCEAENAVG--KISASATLTVQ---MAPIVRERPSDLRLEVGRDAVFLCGIEG-SPPP-STFWMLEGNRSLIY------ 232 (977)
Q Consensus 166 Y~C~a~n~~g--~~~~~~~L~V~---~~p~~~~~p~~~~v~~G~~v~L~C~~~g-~p~~-~i~W~~~g~~~~~~------ 232 (977)
|+|.|.|..+ .....+.|.|. .+|.+...+.......|+.++|.|.+.+ .|.+ .+.|+|+|..+...
T Consensus 87 Y~C~~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~ 166 (216)
T 2xzc_L 87 YYCGTWDSSLNPVFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVT 166 (216)
T ss_dssp EEEEEECTTSCEEEBCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEEC
T ss_pred EEEEEEeCCCcceECCCEEEEEcCCCCCCceEEeCCChhhccCCcEEEEEEEEeEcCCceEEEEEECCeecCCCeeEecC
Confidence 9999999876 23344567776 4677766544443447999999999988 4554 89999999875321
Q ss_pred -CCCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEE
Q psy574 233 -PGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARA 281 (977)
Q Consensus 233 -~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~ 281 (977)
.....+.+... +.|.|..+..+|+|.|+ |.|.|.........
T Consensus 167 ~~~~~~g~~~~~------s~L~i~~~~~~d~g~Y~-C~a~n~~~~~~~~~ 209 (216)
T 2xzc_L 167 EQDSKDSTYSLS------STLTLSKADYEKHKVYA-CEVTHQGLSSPVTK 209 (216)
T ss_dssp CCCTTTCCEEEE------EEEEEEHHHHTTCCEEE-EEEECTTCSSCEEE
T ss_pred cccCCCCCEEEE------EEEEECHHHhCCCCcEE-EEEEcCCCCCceEE
Confidence 00011122222 38999999999999999 99999876554333
No 346
>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}
Probab=99.68 E-value=4.8e-16 Score=164.71 Aligned_cols=185 Identities=20% Similarity=0.284 Sum_probs=133.9
Q ss_pred eEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECC--eeC--------------CCCceEEe-----ccceEEEccCc
Q psy574 101 YIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLG--SAM--------------PEDRMSVL-----PSRSLQLSDVR 159 (977)
Q Consensus 101 ~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~--~~l--------------~~~~~~~~-----~~~~L~I~~v~ 159 (977)
.+...|....+.+|++++|.|.+.+.|.+.+.|+|.. ... ..+++.+. ...+|.|.+++
T Consensus 5 ~v~q~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~ 84 (256)
T 3tf7_C 5 SVTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKASVH 84 (256)
T ss_dssp EEECSCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETTTTEEEEEESSCC
T ss_pred EEEecCceEEecCCCeEEEEEEeCCCCCceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCCCCEEEEEECCCC
Confidence 4566778889999999999999988899999999942 110 12344442 23579999999
Q ss_pred cCCCeEEEEEEEeCCe----eEEEEEEEEEee--------------------CCeEEecCCCcEEeeCCeEEEEEEEecC
Q psy574 160 LEDAGEYVCEAENAVG----KISASATLTVQM--------------------APIVRERPSDLRLEVGRDAVFLCGIEGS 215 (977)
Q Consensus 160 ~~D~G~Y~C~a~n~~g----~~~~~~~L~V~~--------------------~p~~~~~p~~~~v~~G~~v~L~C~~~g~ 215 (977)
.+|+|.|+|.+.|..+ .....+.|.|.. +|.+...|....+.+|++++|.|.+.+.
T Consensus 85 ~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~ 164 (256)
T 3tf7_C 85 RSDSAVYFCAVSAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSEAAVTQSPRNKVTVTGENVTLSCRQTNS 164 (256)
T ss_dssp GGGCSEEEEEEECTTCTTCEEECCCEEEEEEC---------------------CCEEESCSEEEEETTCCEEECEEECSC
T ss_pred cccCEEEEEEEecCCCccceEECCCeEEEEeCCCCCcCCCCcCcccCCCCcCccEEEecCCEEEEeCCCcEEEEEEcCCC
Confidence 9999999999998754 233456777775 5677778888899999999999999877
Q ss_pred CCCeEEEEEcCe--e--eeec--------CCCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCcee--EEE
Q psy574 216 PPPSTFWMLEGN--R--SLIY--------PGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDL--ARA 281 (977)
Q Consensus 216 p~~~i~W~~~g~--~--~~~~--------~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~--~~~ 281 (977)
.+.+.|+|... . .... ......++.+.........|.|.+++.+|+|.|+ |.|.|..|... .-.
T Consensus 165 -~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~-C~a~n~~g~~~fG~gt 242 (256)
T 3tf7_C 165 -HNYMYWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKATRTTQEDFFLTLESASPSQTSLYF-CASSDAPGQLYFGEGS 242 (256)
T ss_dssp -CSEEEEEEECTTSCEEEEEEEESTTCCEECSCCTTCEEECCSSSBCEEEESSCCGGGCEEEE-EEEEEETTEEEECCCE
T ss_pred -ceEEEEEEECCCCCeEEEEEEcCCCceecCccCCceEEEeCCCCeEEEEECCCCHHHCEEEE-EEecCCCCccEECCCe
Confidence 67999998531 1 1110 0011345555543334468999999999999999 99999877542 224
Q ss_pred EEEEEC
Q psy574 282 SLTVSG 287 (977)
Q Consensus 282 ~l~V~~ 287 (977)
.|.|+.
T Consensus 243 ~l~v~~ 248 (256)
T 3tf7_C 243 KLTVLE 248 (256)
T ss_dssp EEEEEC
T ss_pred EEEEEc
Confidence 666665
No 347
>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*
Probab=99.68 E-value=2.3e-16 Score=163.59 Aligned_cols=164 Identities=18% Similarity=0.280 Sum_probs=117.5
Q ss_pred ecccceEEeCCCcEEEEEECCCCCC--CCeEEEEeCC--EEee---------------cCCCceEEEec-----CcEEEE
Q psy574 10 VQPKSQRVAAGDTALLECGPPRGHP--EPTLVWKKNG--HPID---------------FENSKRLRLVD-----GTNLAI 65 (977)
Q Consensus 10 ~~p~~~~v~~G~~v~L~C~~~~g~P--~~~v~W~k~g--~~l~---------------~~~~~r~~~~~-----~g~L~I 65 (977)
.+|..+.+.+|++|+|.|.+ .+.| .+.|.|+|+. ..+. ....+|+.+.. +++|.|
T Consensus 5 ~qp~~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I 83 (225)
T 1op3_H 5 VESGGGLVKAGGSLILSCGV-SNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQM 83 (225)
T ss_dssp EEECCEEEETTCCEEEEEEE-ESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEE
T ss_pred EcCCCeEecCCCCEEEEEEe-cCcccCCceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecCCCCEEEEEE
Confidence 45778999999999999998 5555 6789999842 2110 11246777653 357999
Q ss_pred cCCCCCCCeEEEEEEEecCc-----e--eeeEeEEEEEEc----CCeEEe-CCCceEEeCCCeEEEEEEeccc-Cce-EE
Q psy574 66 QDSRKTDDGRYQCVVKNVAG-----T--RESTDAVLRVLV----KPYIIR-GPKDTTVSASSIIVFECSVGGD-AVL-TV 131 (977)
Q Consensus 66 ~~v~~~D~G~Y~C~a~n~~g-----~--~~s~~~~l~V~~----~P~~~~-~p~~~~v~~G~~v~l~C~v~g~-p~~-~i 131 (977)
.+++.+|+|.|+|.+.+..| . .....+.|.|.. +|.+.. .|.. .+.+|+.++|.|.+.|. |.+ .|
T Consensus 84 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~-~~~~g~~v~L~C~~~g~~P~p~~v 162 (225)
T 1op3_H 84 HKMRVEDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPASTKGPSVFPLAPSS-KSTSGGTAALGCLVKDYFPEPVTV 162 (225)
T ss_dssp CSCCGGGCEEEEEEEECCSSCCSSCCEEEECCCEEEEEESCSCBCCEEEEECCCT-TCCCCCEEEEEEEEEEEBSSCCEE
T ss_pred CCCChhhCEEEEEEEecCCCccccccceeecCCEEEecccCCCcCCeEEEecccc-cccCCCcEEEEEEEEeEECCCeEE
Confidence 99999999999999998754 2 122346788875 355443 3433 35789999999999876 776 99
Q ss_pred EEEECCeeCCCC--ceEEe------ccceEEEccCccCCCeEEEEEEEeCCee
Q psy574 132 HWKRLGSAMPED--RMSVL------PSRSLQLSDVRLEDAGEYVCEAENAVGK 176 (977)
Q Consensus 132 ~W~k~~~~l~~~--~~~~~------~~~~L~I~~v~~~D~G~Y~C~a~n~~g~ 176 (977)
.|+|++..+... ..... ....|.|.++..+| |.|+|.|.|..+.
T Consensus 163 ~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~ 214 (225)
T 1op3_H 163 SWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSN 214 (225)
T ss_dssp ECCTTSCCTTCEECCCEECTTSCEEEEEEEEEEGGGTTC-CCCCEEEEEGGGT
T ss_pred EEecCCCcCCeEecCceeCCCCCEEEEEEEEEechhcCC-CcEEEEEEcCCCC
Confidence 999998764210 00111 12368999998888 9999999997654
No 348
>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}
Probab=99.68 E-value=1.9e-16 Score=170.08 Aligned_cols=177 Identities=14% Similarity=0.279 Sum_probs=124.3
Q ss_pred cceecccceEEeCCCcEEEEEECCCCC--CCCeEEEEeCC--EEe---------------ecCCCceEEEecC-----cE
Q psy574 7 EFRVQPKSQRVAAGDTALLECGPPRGH--PEPTLVWKKNG--HPI---------------DFENSKRLRLVDG-----TN 62 (977)
Q Consensus 7 ~~~~~p~~~~v~~G~~v~L~C~~~~g~--P~~~v~W~k~g--~~l---------------~~~~~~r~~~~~~-----g~ 62 (977)
.+.. |..+.+.+|++|+|.|.+ .+. +.+.+.|+|.. ..+ ......|+.+..+ .+
T Consensus 3 ~v~q-p~~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~s 80 (280)
T 3fku_X 3 QLVQ-SGAEVKKPGSSVKVSCTS-SEVTFSSFAISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITADQSTRTAY 80 (280)
T ss_dssp CEEC-CCCCEECTTCCEEEEEEE-CCSCCTTSCEEECCBCSSSCCCCCEEECTTTCCEEECGGGTTTCEEEEETTTTEEE
T ss_pred eEEc-CCCEEECCCCcEEEEEEe-eccCCCCeEEEEEEeCCCCCCEEEEEEeccCCccccCcccCCcEEEEEeCCCCEEE
Confidence 3455 888999999999999998 443 66889999832 110 1112346666633 27
Q ss_pred EEEcCCCCCCCeEEEEEEEec--------CceeeeEeEEEEEEc---------------CCeEEeCCCceEEeCCCeEEE
Q psy574 63 LAIQDSRKTDDGRYQCVVKNV--------AGTRESTDAVLRVLV---------------KPYIIRGPKDTTVSASSIIVF 119 (977)
Q Consensus 63 L~I~~v~~~D~G~Y~C~a~n~--------~g~~~s~~~~l~V~~---------------~P~~~~~p~~~~v~~G~~v~l 119 (977)
|.|.+++.+|+|.|+|.+.+. ........+.|.|.. ++.+...|. ..+.+|++++|
T Consensus 81 L~I~~v~~~DsG~Y~C~~~~~~~~~g~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~v~~~p~-~~v~~G~~v~L 159 (280)
T 3fku_X 81 MDLRSLRSEDTAVYYCARSPSYICSGGTCVFDHWGQGTLVTVSSGGGGSGGGGSGGGGIQPGLTQPPS-VSKGLRQTATL 159 (280)
T ss_dssp EEECSCCSTTCEECCEEECSSSSSSSTTCCCCEECCCCEEEECC--------------CCCSBBCCSE-EEECTTCCEEE
T ss_pred EEECCCChhhCEEEEEEEecCCccccccccccEECCCEEEEEcCCCCccCCCCCCceEeeeEEEeCCc-EEEecCCCEEE
Confidence 999999999999999999886 112223345777776 555666666 89999999999
Q ss_pred EEEecc-cC-ceEEEEEECC--eeCC-------------CCceEEec---cceEEEccCccCCCeEEEEEEEeCC--ee-
Q psy574 120 ECSVGG-DA-VLTVHWKRLG--SAMP-------------EDRMSVLP---SRSLQLSDVRLEDAGEYVCEAENAV--GK- 176 (977)
Q Consensus 120 ~C~v~g-~p-~~~i~W~k~~--~~l~-------------~~~~~~~~---~~~L~I~~v~~~D~G~Y~C~a~n~~--g~- 176 (977)
.|.+.+ .+ .+.+.|+|.. ..+. .+|+.... ...|.|.+++.+|+|.|+|.+.+.. ..
T Consensus 160 ~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~ 239 (280)
T 3fku_X 160 TCTGNSNNVGNQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASRSGNTASLTITGLQPEDEADYYCSTWDSSLSAVV 239 (280)
T ss_dssp EEECCCCCCCTTCCEEEEECSSSCCEESCCTTCCCCSSSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEEEETTTTEEE
T ss_pred EEEecCCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCCEEEEccCCEEEEEECCCCHHHCEEEEEEEecCCCCceE
Confidence 999977 43 4789999842 2111 23444432 2359999999999999999999876 21
Q ss_pred EEEEEEEEEe
Q psy574 177 ISASATLTVQ 186 (977)
Q Consensus 177 ~~~~~~L~V~ 186 (977)
....+.|.|.
T Consensus 240 ~g~~t~l~V~ 249 (280)
T 3fku_X 240 FGGGTKLTVL 249 (280)
T ss_dssp EBCCCEEEEC
T ss_pred ECCCEEEEEC
Confidence 3344566665
No 349
>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D
Probab=99.68 E-value=9e-16 Score=162.62 Aligned_cols=180 Identities=16% Similarity=0.280 Sum_probs=131.9
Q ss_pred CCceEEeCCCeEEEEEEecccC--ceEEEEEECC--ee---C---------------CCCceEEecc-----ceEEEccC
Q psy574 106 PKDTTVSASSIIVFECSVGGDA--VLTVHWKRLG--SA---M---------------PEDRMSVLPS-----RSLQLSDV 158 (977)
Q Consensus 106 p~~~~v~~G~~v~l~C~v~g~p--~~~i~W~k~~--~~---l---------------~~~~~~~~~~-----~~L~I~~v 158 (977)
+....+.+|++++|.|.+.+.+ .+.+.|+|.. .. + ..+|+.+..+ .+|.|.++
T Consensus 9 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v 88 (256)
T 3umt_A 9 SGLELVKPGASVKISCKTSGYTFTEYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDKSSSTAYLELRSL 88 (256)
T ss_dssp CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSC
T ss_pred cCceEEcCCCCEEEEEEEecccccccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEecCCCEEEEEECCC
Confidence 3456789999999999998765 6789999842 11 1 1245555432 34999999
Q ss_pred ccCCCeEEEEEEEeC----CeeEEEEEEEEEee----------------CCeEEecCCCcEEeeCCeEEEEEEEecCCCC
Q psy574 159 RLEDAGEYVCEAENA----VGKISASATLTVQM----------------APIVRERPSDLRLEVGRDAVFLCGIEGSPPP 218 (977)
Q Consensus 159 ~~~D~G~Y~C~a~n~----~g~~~~~~~L~V~~----------------~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~ 218 (977)
+.+|+|.|+|.+.|. .+.....+.|.|.. +|.+...|....+.+|++++|.|.+.+.+.+
T Consensus 89 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~ 168 (256)
T 3umt_A 89 TSEDSAVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLTQSPSSLSASLGERVSITCRASQDIGS 168 (256)
T ss_dssp CGGGCEEEEEEECCSTTCCSCEECCCEEEEECC---------------CCCCEEEECSEEEECTTCCEEEEEEESSCCTT
T ss_pred CcccCEEEEEEEccCCCccccEECCCEEEEEcCCCccccCcccCCCCccccEEEcCCCeEEEECCCCEEEEEEEecCCCc
Confidence 999999999999987 34445567888874 6777778888899999999999999999888
Q ss_pred eEEEEEcC--eee--eecC-----CCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCcee-EEEEEEEEC
Q psy574 219 STFWMLEG--NRS--LIYP-----GDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDL-ARASLTVSG 287 (977)
Q Consensus 219 ~i~W~~~g--~~~--~~~~-----~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~-~~~~l~V~~ 287 (977)
.+.|+|+. ... .+.. .....|+..... .+...|+|.+++.+|+|.|+ |.|.|...... ..+.|.|+.
T Consensus 169 ~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~L~I~~v~~~D~G~Y~-C~~~~~~~~~fg~gt~L~V~~ 245 (256)
T 3umt_A 169 NLNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSRS-GSDYSLTISSLESEDFVDYY-CLQYASSPPTFGGGTKLEIKR 245 (256)
T ss_dssp CEEEEEECTTCCEEEEEETTTEECTTSCTTEEEEEE-TTEEEEEECSCCGGGCSEEE-EEECSSSSCEECCCEEEEEC-
T ss_pred EEEEEEECCCCCcEEEEEeccccCCccCCCEEEecC-CCEEEEEECCCChhHCEEEE-EEEeeCCCcEECCCEEEEEEC
Confidence 99999952 221 1110 112356666543 34468999999999999999 99998654432 346777776
No 350
>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1
Probab=99.67 E-value=2.8e-16 Score=166.60 Aligned_cols=181 Identities=19% Similarity=0.261 Sum_probs=128.9
Q ss_pred CCCceEEeCCCeEEEEEEecccC--ceEEEEEECC--eeC-----------------CCCceEEec-----cceEEEccC
Q psy574 105 GPKDTTVSASSIIVFECSVGGDA--VLTVHWKRLG--SAM-----------------PEDRMSVLP-----SRSLQLSDV 158 (977)
Q Consensus 105 ~p~~~~v~~G~~v~l~C~v~g~p--~~~i~W~k~~--~~l-----------------~~~~~~~~~-----~~~L~I~~v 158 (977)
.|....+.+|++++|.|.+.|.| .+.|.|+|++ ..+ ..+|+.+.. ..+|.|.++
T Consensus 6 ~p~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v 85 (257)
T 1f3r_B 6 ESGPGLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSL 85 (257)
T ss_dssp EECCSEECTTSEEEEEEEEESSCTTTSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEETTTTEEEEEEESC
T ss_pred CCCCccccCCceEEEEEEEecccCCCccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEEECCC
Confidence 34456789999999999998875 6889999962 211 134666543 248999999
Q ss_pred ccCCCeEEEEEEEeCCe-------e--EEEEEEEEEeeCC---------------eEEecCCCcEEeeCCeEEEEEEEec
Q psy574 159 RLEDAGEYVCEAENAVG-------K--ISASATLTVQMAP---------------IVRERPSDLRLEVGRDAVFLCGIEG 214 (977)
Q Consensus 159 ~~~D~G~Y~C~a~n~~g-------~--~~~~~~L~V~~~p---------------~~~~~p~~~~v~~G~~v~L~C~~~g 214 (977)
+.+|+|.|+|.|.|..| . ....+.|.|..++ .+...|....+.+|++++|.|.+.+
T Consensus 86 ~~~DsG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~ 165 (257)
T 1f3r_B 86 QTDDTGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGGGSDIKLTQSPSLLSASVGDRVTLSCKGSQ 165 (257)
T ss_dssp CTTCCEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCCSSCCSSSCCCCCEECSCEETSEECCCTTCCEEEEEECSS
T ss_pred CcccCEEEEEEEcccccCccccccccccCCceEEEEEeCCccccccccCCCccceEEEccCCEEEEcCCCCEEEEEEECC
Confidence 99999999999999853 1 2245678887643 2334466677899999999999999
Q ss_pred CCCCeEEEEE--cCeeee--ecC-----CCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEE
Q psy574 215 SPPPSTFWML--EGNRSL--IYP-----GDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTV 285 (977)
Q Consensus 215 ~p~~~i~W~~--~g~~~~--~~~-----~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V 285 (977)
.+.+.+.|+| +|..+. ... .....++..... .+...|.|.+++.+|+|.|+ |.|.|........+.|.|
T Consensus 166 ~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~L~I~~v~~~D~G~Y~-C~a~n~~~~~g~gt~l~V 243 (257)
T 1f3r_B 166 NINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGS-GTDYTLTISSLQPEDVATYF-CYQYNNGYTFGAGTKLEL 243 (257)
T ss_dssp CCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE-BTEEEEEECSCCGGGCSEEE-EEEESSSEEECCCCEECC
T ss_pred cCCCcEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEecC-CCEEEEEECCCChhhCEEEE-EEEeCCCCeECCCEEEEE
Confidence 9888999999 454321 111 111356665532 34568999999999999999 999997511122345666
Q ss_pred EC
Q psy574 286 SG 287 (977)
Q Consensus 286 ~~ 287 (977)
+.
T Consensus 244 ~~ 245 (257)
T 1f3r_B 244 KA 245 (257)
T ss_dssp SS
T ss_pred eC
Confidence 55
No 351
>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A
Probab=99.67 E-value=3.5e-16 Score=165.42 Aligned_cols=185 Identities=15% Similarity=0.259 Sum_probs=134.3
Q ss_pred EEeCCCceEEeCCCeEEEEEEecccC--ceEEEEEEC--CeeC------------------CCCceEEecc-----ceEE
Q psy574 102 IIRGPKDTTVSASSIIVFECSVGGDA--VLTVHWKRL--GSAM------------------PEDRMSVLPS-----RSLQ 154 (977)
Q Consensus 102 ~~~~p~~~~v~~G~~v~l~C~v~g~p--~~~i~W~k~--~~~l------------------~~~~~~~~~~-----~~L~ 154 (977)
++..|.+..+.+|++++|.|.+.+.+ .+.+.|+|. +..+ ..+|+.+..+ .+|.
T Consensus 4 ~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~ 83 (253)
T 3uzq_A 4 LLEQSGAELVKPGASVRLSCTASGFNIKDTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTSSNTAYLH 83 (253)
T ss_dssp CEEECCCEEECTTCCEEEEEEECSSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEE
T ss_pred eEecCCCeeecCCCcEEEEEEeeCCcccCceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecCCCeEEEE
Confidence 34556778899999999999998743 678999993 1111 1245555432 2499
Q ss_pred EccCccCCCeEEEEEEEeCCeeE-EEEEEEEEee---------------CCeEEecCCCcEEeeCCeEEEEEEEecCCCC
Q psy574 155 LSDVRLEDAGEYVCEAENAVGKI-SASATLTVQM---------------APIVRERPSDLRLEVGRDAVFLCGIEGSPPP 218 (977)
Q Consensus 155 I~~v~~~D~G~Y~C~a~n~~g~~-~~~~~L~V~~---------------~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~ 218 (977)
|.+++.+|+|.|+|.+.|..+.. ...+.|.|.. ++.+...|....+.+|++++|.|.+.+.+.+
T Consensus 84 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~ 163 (253)
T 3uzq_A 84 LSSLTSGDTAVYYCSRGWEGFAYWGQGTLVTVSAGGGGSGGGGSGGGGSELVMTQTPASLAVSLGQRATISCRASENVDR 163 (253)
T ss_dssp ECSCCGGGCEEEEEEECSSSCCEECCCEEEEECSSSCCCCC---------CCEEEECSEEEECTTSCEEEEEEESSCCEE
T ss_pred eCCCCcccCEEEEEEEeeCCccEECCCcEEEEecCCccccccccCCCcccceEECcCCeEEEeCCCCEEEEEEecCcccc
Confidence 99999999999999999865543 3566777774 4667777888899999999999999998876
Q ss_pred ----eEEEEEcC--eee--eecC-----CCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCcee-EEEEEE
Q psy574 219 ----STFWMLEG--NRS--LIYP-----GDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDL-ARASLT 284 (977)
Q Consensus 219 ----~i~W~~~g--~~~--~~~~-----~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~-~~~~l~ 284 (977)
.+.|+|++ ... .... .....++..... .+...|.|.+++.+|+|.|. |.|.|..+... .-+.|.
T Consensus 164 ~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~L~I~~v~~~DsG~Y~-C~~~n~~~~~fg~gt~l~ 241 (253)
T 3uzq_A 164 YGNSFMHWYQQKAGQPPKLLIYRASNLESGIPARFSGSGS-RTDFTLTINPVEADDVATYF-CQRSNEVPWTFGGGTKLE 241 (253)
T ss_dssp TTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE-TTEEEEEESSCCGGGCEEEE-EEECSSSSCCBCCCEEEE
T ss_pred CCCcEEEEEEECCCCCCEEEEEEccccCCccCCceEEeCC-CCEEEEEECCCCHHHCEEEE-EEEccCCCcEECCCEEEE
Confidence 89999953 221 1110 112356665442 34568999999999999999 99999765443 345788
Q ss_pred EECC
Q psy574 285 VSGP 288 (977)
Q Consensus 285 V~~~ 288 (977)
|...
T Consensus 242 v~~~ 245 (253)
T 3uzq_A 242 IKRP 245 (253)
T ss_dssp ECCC
T ss_pred EcCC
Confidence 8773
No 352
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.67 E-value=8.9e-16 Score=160.58 Aligned_cols=176 Identities=18% Similarity=0.235 Sum_probs=130.6
Q ss_pred cCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCC--c-eEEeccceEEEccCccCCCeEEEEEEEeCC
Q psy574 98 VKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED--R-MSVLPSRSLQLSDVRLEDAGEYVCEAENAV 174 (977)
Q Consensus 98 ~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~--~-~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~ 174 (977)
.+|.+...|.. .+.+|++++|.|.+.+ +...+.|+|++..+... + .....+..|.|.+++.+|+|.|+|.+.|..
T Consensus 6 ~kP~i~~~P~~-~v~~G~~VtL~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~ 83 (242)
T 1p6f_A 6 PKPFIWAEPHF-MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGE 83 (242)
T ss_dssp CCCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECCSSCTTCCEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred CCCEEEeeCCC-ccCCCCcEEEEEeeCC-CCcEEEEEECCCccccccccccCCcceeEEEecCCCcccCeEEEEEEecCC
Confidence 46777777766 8899999999999865 45689999999765310 0 011245689999999999999999998865
Q ss_pred ee--EEEEEEEEEee---CCeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCccccEEEEEccCCc
Q psy574 175 GK--ISASATLTVQM---APIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGM 249 (977)
Q Consensus 175 g~--~~~~~~L~V~~---~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~ 249 (977)
+. .+..+.|.|.. +|.+...| ...+.+|++++|.|.+.+. .+.+.|+|+|..+.. .. .. ....
T Consensus 84 ~~s~~S~~~~L~V~~~~~~P~i~~~p-~~~v~~G~~vtL~C~~~~~-~~~~~w~k~g~~~~~-------~~--~~-~~~~ 151 (242)
T 1p6f_A 84 LWSEPSNLLDLVVTEMYDTPTLSVHP-GPEVISGEKVTFYCRLDTA-TSMFLLLKEGRSSHV-------QR--GY-GKVQ 151 (242)
T ss_dssp EECCCCCCEEEEEECCSCCCEEEEES-CSEEETTCEEEEEEECTTS-CSEEEEEECSSSCEE-------EE--EE-CSSE
T ss_pred ccccCCcceEEEeecccCCCceEccC-CCccCCCCcEEEEEecCCC-CCEEEEEECCCccCc-------cc--cC-CCce
Confidence 43 34567788874 56666666 4578999999999998764 458999999976532 11 11 1233
Q ss_pred eEEEEeecccCCCCeEEEEEEEcCC---CceeEEEEEEEECC
Q psy574 250 NLLKIQNVSRTAAPLIILCLGVNAA---GSDLARASLTVSGP 288 (977)
Q Consensus 250 s~L~I~~v~~~d~G~Y~~C~a~n~~---g~~~~~~~l~V~~~ 288 (977)
..|.|.+++.+|+|.|+ |.|.|.. ...+....|.|.+.
T Consensus 152 ~~l~I~~v~~~d~G~Y~-C~a~n~~~~~s~~S~~~~l~V~~~ 192 (242)
T 1p6f_A 152 AEFPLGPVTTAHRGTYR-CFGSYNNHAWSFPSEPVKLLVTGD 192 (242)
T ss_dssp EEEEEEECCGGGCEEEE-EEEEEETTEECCCCCCEEEEEEC-
T ss_pred EEEEeCCCccccCEEEE-EEEECCCCcccCCCCCEEEEEecc
Confidence 59999999999999999 9999874 23345677888773
No 353
>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*
Probab=99.67 E-value=7.4e-16 Score=160.99 Aligned_cols=177 Identities=15% Similarity=0.218 Sum_probs=129.4
Q ss_pred CCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCe--eC-------------CCCceEEe---ccceEEEccCcc
Q psy574 99 KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGS--AM-------------PEDRMSVL---PSRSLQLSDVRL 160 (977)
Q Consensus 99 ~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~--~l-------------~~~~~~~~---~~~~L~I~~v~~ 160 (977)
.+.+...|....+.+|++++|.|.+.+.+.+.+.|+|++. .. ..+++... .+.+|.|.+++.
T Consensus 24 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~ 103 (237)
T 3sob_L 24 DIQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQP 103 (237)
T ss_dssp CCCEEEECSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred cceEEeCCCeEEEeCCCcEEEEEecCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEEcCCCEEEEEECCCCh
Confidence 3455666778899999999999999888889999999431 10 12455544 346799999999
Q ss_pred CCCeEEEEEEEeCCee-EEEEEEEEE---eeCCeEEecCCCcEEeeCCeEEEEEEEec-CC-CCeEEEEEcCeeeeec--
Q psy574 161 EDAGEYVCEAENAVGK-ISASATLTV---QMAPIVRERPSDLRLEVGRDAVFLCGIEG-SP-PPSTFWMLEGNRSLIY-- 232 (977)
Q Consensus 161 ~D~G~Y~C~a~n~~g~-~~~~~~L~V---~~~p~~~~~p~~~~v~~G~~v~L~C~~~g-~p-~~~i~W~~~g~~~~~~-- 232 (977)
+|+|.|+|.+.+..+. ....+.|.| ..+|.+...+....+.+|+.++|.|.+.+ .| .+.+.|+++|..+...
T Consensus 104 ~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~l~C~~~~~~p~~~~v~W~k~g~~~~~~~~ 183 (237)
T 3sob_L 104 EDFATYYCQQSYTTPPTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQ 183 (237)
T ss_dssp GGCEEEEEEECSSSSCEECCCEEEEEECCCBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEE
T ss_pred hhCeEEEEeeccCCceEEcCcEEEEEecCCCCCceEEeCCChhhccCCceEEEEEEcccCCCceEEEEEECCCCCCCcee
Confidence 9999999999887653 334456666 35677776666666667999999999988 44 5799999999876421
Q ss_pred -----CCCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEE
Q psy574 233 -----PGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARAS 282 (977)
Q Consensus 233 -----~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~ 282 (977)
.....+.+.+. +.|.|.....+|.|.|+ |.|.|..........
T Consensus 184 ~~~~~~~~~~g~~~~~------s~L~i~~~~~~d~g~Y~-C~a~n~~~~~~~~~~ 231 (237)
T 3sob_L 184 ESVTEQDSKDSTYSLS------STLTLSKADYEKHKVYA-CEVTHQGLSSPVTKS 231 (237)
T ss_dssp EEECCCCTTTCCEEEE------EEEEEEHHHHTTCCEEE-EEEECTTCSSCEEEE
T ss_pred ecccccccCCCcEEEE------EEEEEcHHHccCCCcEE-EEEeeCCCCCceeee
Confidence 00112223322 37999999999999999 999999765544433
No 354
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*
Probab=99.67 E-value=1.9e-15 Score=151.93 Aligned_cols=158 Identities=15% Similarity=0.212 Sum_probs=116.4
Q ss_pred cceecccc--eEEeCCCcEEEEEECCCCCCCC--eEEEEeCCEEeecCCCceEEEec-CcEEEEcCCCCCCCeEEEEEEE
Q psy574 7 EFRVQPKS--QRVAAGDTALLECGPPRGHPEP--TLVWKKNGHPIDFENSKRLRLVD-GTNLAIQDSRKTDDGRYQCVVK 81 (977)
Q Consensus 7 ~~~~~p~~--~~v~~G~~v~L~C~~~~g~P~~--~v~W~k~g~~l~~~~~~r~~~~~-~g~L~I~~v~~~D~G~Y~C~a~ 81 (977)
.|.++|.+ +.+..|++++|+|.+ +.|.| .|.|++.+..+ ++..+.. ++.|.|.+++.+|+|.|.|.|.
T Consensus 7 ~~~V~pp~~~v~v~~G~sv~L~C~a--~~p~P~~~i~W~~~~~~l-----~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~ 79 (210)
T 1gsm_A 7 PLQVEPPEPVVAVALGASRQLTCRL--ACADRGASVQWRGLDTSL-----GAVQSDTGRSVLTVRNASLSAAGTRVCVGS 79 (210)
T ss_dssp SEEEESCCSEEEEETTCCEEEEEEE--CCSSTTCEEEEESSTTTT-----CCEEEESSEEEEEECSCCGGGCEEEEEEEE
T ss_pred CEEEeCCCCceEEeCCCCEEEEEEC--CCCCCCcceEEeeccccc-----CcEEecCCccEEEECccCcccCceEEEEEE
Confidence 45565554 599999999999998 66666 99999955444 2333333 4579999999999999999999
Q ss_pred ecCceeeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEeccc-Cc----eEEEEEECCeeCCCCce---EE------
Q psy574 82 NVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGD-AV----LTVHWKRLGSAMPEDRM---SV------ 147 (977)
Q Consensus 82 n~~g~~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~-p~----~~i~W~k~~~~l~~~~~---~~------ 147 (977)
|..+. ....+.|+|+.+|........ .+.+|+.+ |.|.+.|. |. ++|.|+|++..|..... .+
T Consensus 80 n~~~~-~~~~~~ltV~~~P~~~~i~~~-~~~~g~~~-l~C~a~g~~P~~~~~lti~Wlk~~~~L~~~~~~~~~~~~~~~~ 156 (210)
T 1gsm_A 80 CGGRT-FQHTVQLLVYAFPNQLTVSPA-ALVPGDPE-VACTAHKVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEE 156 (210)
T ss_dssp ETTEE-EEEEEEEEEEBCCSEEEEESS-SBCTTCCE-EEEEEEEEBCCCTTTEEEEEEETTEECTTCEECCCEEEECTTC
T ss_pred eCCCc-eEEEEEEEEEecCCCcEEccc-eEEeCCce-EEEEeCCCCCCCCCCcEEEEEECCEEcccccccccceeccccc
Confidence 98765 557789999999976553222 67788888 99999775 63 58999999999865432 11
Q ss_pred e---cc------ceEEEccCccCCCeEEEEEEEeCC
Q psy574 148 L---PS------RSLQLSDVRLEDAGEYVCEAENAV 174 (977)
Q Consensus 148 ~---~~------~~L~I~~v~~~D~G~Y~C~a~n~~ 174 (977)
. .+ .+|.+.....+|.+.|+|+|.+..
T Consensus 157 ~~~~~~~~~~vts~~~~~~~~~D~~~~~tC~a~~~L 192 (210)
T 1gsm_A 157 PQGDEDVLFRVTERWRLPPLGTPVPPALYCQATMRL 192 (210)
T ss_dssp CSSCCCCCEEEEEEEECCCCCSSCCSEEEEEEEEEE
T ss_pred ccCCcceEEEEEEEEeecCCcccCCceEEEEEEeeC
Confidence 0 11 223344666677799999999754
No 355
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A
Probab=99.67 E-value=9.8e-16 Score=157.31 Aligned_cols=166 Identities=22% Similarity=0.333 Sum_probs=119.2
Q ss_pred EeCCCceEEeCCCeEEEEEEeccc-------CceEEEEEECCee------C------------CCCceEEec-----cce
Q psy574 103 IRGPKDTTVSASSIIVFECSVGGD-------AVLTVHWKRLGSA------M------------PEDRMSVLP-----SRS 152 (977)
Q Consensus 103 ~~~p~~~~v~~G~~v~l~C~v~g~-------p~~~i~W~k~~~~------l------------~~~~~~~~~-----~~~ 152 (977)
+..|..+.+.+|++++|.|.+.+. +.+.+.|+|++.. + ..+|+.+.. +.+
T Consensus 4 ~~~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~s 83 (214)
T 2zg1_A 4 LQVQKSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCS 83 (214)
T ss_dssp EECCSEEEEETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCGGGTBCC
T ss_pred eeCCcEEEEecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEEeccCCCCeEE
Confidence 456778899999999999999654 5789999998652 1 124555543 347
Q ss_pred EEEccCccCCCeEEEEEEEeCCee-E---EEEEEEEEeeC---CeEEecCCCcEEeeCCeEEEEEEEecC----CCCeEE
Q psy574 153 LQLSDVRLEDAGEYVCEAENAVGK-I---SASATLTVQMA---PIVRERPSDLRLEVGRDAVFLCGIEGS----PPPSTF 221 (977)
Q Consensus 153 L~I~~v~~~D~G~Y~C~a~n~~g~-~---~~~~~L~V~~~---p~~~~~p~~~~v~~G~~v~L~C~~~g~----p~~~i~ 221 (977)
|.|.+++.+|+|.|+|.+.+..+. . ...+.|.|..+ |.+.. +. .+.+|+.++|.|.+.+. |.+.+.
T Consensus 84 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~p~i~~-~~--~~~~G~~v~L~C~~~~~~~~~p~p~v~ 160 (214)
T 2zg1_A 84 LSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHF-LE--PLESGRPTRLSCSLPGSCEAGPPLTFS 160 (214)
T ss_dssp EEECSCCGGGCEEEEEEEEETTTEEEECCSSCEEEEEECCCCCCEEC---C--CCCTTCCEEEEEECTTCCSCSSCCEEE
T ss_pred EEEccCCHhhCceEEEEEEcCCCceeeecCCceEEEEecCCCCCceec-Cc--cccCCCeEEEEEEeccCCCCCCCceEE
Confidence 999999999999999999987633 2 24678888863 44433 22 36789999999999764 788999
Q ss_pred EEEcCeeeeecCCCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEE
Q psy574 222 WMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLT 284 (977)
Q Consensus 222 W~~~g~~~~~~~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~ 284 (977)
|++++..... .+. ...+.|.|..+..+|.|.|+ |.|.|..+....++.+.
T Consensus 161 W~~~~~~~~~------~~~------~~~~~L~i~~~~~~~~g~Y~-C~a~n~~~~~~~~~~v~ 210 (214)
T 2zg1_A 161 WTGNALSPLD------PET------TRSSELTLTPRPEDHGTNLT-CQMKRQGAQVTTERTVQ 210 (214)
T ss_dssp EESSTTSSSC------SSC------CCSSEEEECCCTTCCSCEEE-EEEECC----CCEEEEE
T ss_pred EeCCCCccCC------CCc------eeEEEEEEecccHHcCcEEE-EEEEeCCCCcceEEEEE
Confidence 9999865321 110 12348999999999999999 99999876544444443
No 356
>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L
Probab=99.66 E-value=9e-16 Score=164.57 Aligned_cols=188 Identities=13% Similarity=0.188 Sum_probs=133.2
Q ss_pred CCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCe-----eC----------CCCceEEecc---ceEEEccCcc
Q psy574 99 KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGS-----AM----------PEDRMSVLPS---RSLQLSDVRL 160 (977)
Q Consensus 99 ~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~-----~l----------~~~~~~~~~~---~~L~I~~v~~ 160 (977)
.+.+...|....+.+|++++|.|.+.+.|.+.|.|+|++. .+ ...|+.+..+ .+|.|.+++.
T Consensus 12 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~ 91 (276)
T 3auv_A 12 DIQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQP 91 (276)
T ss_dssp CCCEEEECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred ceeEEeCCCeEEEcCCCCEEEEeEcCCCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEeccCCeEEEEEccCCh
Confidence 3456667888899999999999999988889999999642 11 1245555422 3899999999
Q ss_pred CCCeEEEEEEEeCCee-EEEEEEEEEeeCC--------------eEEecCCCcEEeeCCeEEEEEEEecCC--CCeEEEE
Q psy574 161 EDAGEYVCEAENAVGK-ISASATLTVQMAP--------------IVRERPSDLRLEVGRDAVFLCGIEGSP--PPSTFWM 223 (977)
Q Consensus 161 ~D~G~Y~C~a~n~~g~-~~~~~~L~V~~~p--------------~~~~~p~~~~v~~G~~v~L~C~~~g~p--~~~i~W~ 223 (977)
+|+|.|+|.+.|..+. ....+.|.|..+| .+...|....+.+|++++|.|.+.+.+ .+.+.|+
T Consensus 92 ~DsG~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~p~~~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~ 171 (276)
T 3auv_A 92 EDFATYYCQQHYTTPPTFGCGTKVEIKGGGGGSIEGRSGGGGSEVQLVESGGGLVQPGGSLRLSCAASGFTISDYWIHWV 171 (276)
T ss_dssp GGCEEEEEEECSSSSCCCCCCEEEEC-----------------CCEEEEECCEEECTTCCEEEEEEEESSCGGGSEEEEE
T ss_pred hhCEEEEEEEecCCcccccCCEEEEEecCCCccccccccccCcceEEECCCceEecCCCeEEEEEEecCccCCCCEEEEE
Confidence 9999999999987554 3344677777543 233456677899999999999999876 4899999
Q ss_pred EcC--eee--eec----------CCCccccEEEEEcc-CCceEEEEeecccCCCCeEEEEEEEcCC---Cc--eeEEEEE
Q psy574 224 LEG--NRS--LIY----------PGDRVDNIQAEITS-DGMNLLKIQNVSRTAAPLIILCLGVNAA---GS--DLARASL 283 (977)
Q Consensus 224 ~~g--~~~--~~~----------~~~~~~~~~~~~~~-~g~s~L~I~~v~~~d~G~Y~~C~a~n~~---g~--~~~~~~l 283 (977)
|++ ... ... ......++.+.... .+...|.|.+++.+|+|.|+ |.|.|.. +. ....+.|
T Consensus 172 k~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~-C~a~n~~~~~~~~~fg~gt~l 250 (276)
T 3auv_A 172 RQAPGKCLEWVAGITPAGGYTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYY-CARFVFFLPYAMDYWGQGTLV 250 (276)
T ss_dssp EECTTCCEEEEEEECGGGCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEE-EEEECSSTTCSCCCBCCCEEE
T ss_pred EcCCCCCcEEEEEEeccCCccccccccCCcEEEEecCCCcEEEEEECCCChhHCEEEE-EEEEcCcCCcCceEECCCEEE
Confidence 974 211 110 11234577776532 24468999999999999999 9999973 22 1233567
Q ss_pred EEEC
Q psy574 284 TVSG 287 (977)
Q Consensus 284 ~V~~ 287 (977)
.|..
T Consensus 251 ~V~~ 254 (276)
T 3auv_A 251 TVSS 254 (276)
T ss_dssp EEC-
T ss_pred EEcc
Confidence 7654
No 357
>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D
Probab=99.66 E-value=8.9e-16 Score=161.40 Aligned_cols=168 Identities=17% Similarity=0.229 Sum_probs=121.8
Q ss_pred ccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEe--------------CCEEeecC-C-CceEEEecC----cEEEE
Q psy574 6 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKK--------------NGHPIDFE-N-SKRLRLVDG----TNLAI 65 (977)
Q Consensus 6 ~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k--------------~g~~l~~~-~-~~r~~~~~~----g~L~I 65 (977)
..+...|..+.+.+|++++|.|. .+.|.+.|.|+| ++..+... . ..|+.+..+ .+|.|
T Consensus 3 ~~v~~~p~~v~v~~G~~v~L~C~--~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I 80 (245)
T 4ei6_B 3 PKVLQIPSHQIIDMGQMVTLNCD--PVSNHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVERPDGSYFTLKI 80 (245)
T ss_dssp CCCEEECSEEEEETTCCEEEEEE--CCTTCCEEEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEEECCTTSCEEEEE
T ss_pred cceEeCCceEEecCCCCEEEEEE--cCCCCCEEEEEEECCCCCcEEEEEECCCceeccCCCccCCEEEEeccCceEEEEE
Confidence 56778898999999999999994 477889999998 33333211 1 167777643 37999
Q ss_pred cCCCCCCCeEEEEEEEecC---ceeeeEeEEEEEE------cCCeEE-eCCCceEEeCCCeEEEEEEecc-cCce-EEEE
Q psy574 66 QDSRKTDDGRYQCVVKNVA---GTRESTDAVLRVL------VKPYII-RGPKDTTVSASSIIVFECSVGG-DAVL-TVHW 133 (977)
Q Consensus 66 ~~v~~~D~G~Y~C~a~n~~---g~~~s~~~~l~V~------~~P~~~-~~p~~~~v~~G~~v~l~C~v~g-~p~~-~i~W 133 (977)
.+++.+|+|.|+|.+.+.. .......+.|.|. .+|.+. ..|....+.+|+.++|.|.+.| .|.+ .+.|
T Consensus 81 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W 160 (245)
T 4ei6_B 81 QPTALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSW 160 (245)
T ss_dssp CSCCGGGCEEEEEEEECSSTTCCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEE
T ss_pred CCCCHhHCEEEEEEEccCCCcceEEEcCCcEEEEecccCCCCCceEEEeCCCcccccCCCceEEEEEEeeEeCCCeEEEE
Confidence 9999999999999998532 2223344577777 355443 4555556677999999999987 4544 8999
Q ss_pred EECCeeCCCCceEEe---------cc------ceEEEccCccCC-CeEEEEEEEeCCe
Q psy574 134 KRLGSAMPEDRMSVL---------PS------RSLQLSDVRLED-AGEYVCEAENAVG 175 (977)
Q Consensus 134 ~k~~~~l~~~~~~~~---------~~------~~L~I~~v~~~D-~G~Y~C~a~n~~g 175 (977)
+|+|..+........ .+ ..|.|.....+| .|.|+|.|.|...
T Consensus 161 ~~~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~ytC~v~~~~l 218 (245)
T 4ei6_B 161 WVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGL 218 (245)
T ss_dssp EETTEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCB
T ss_pred EECCEECCCCcccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEECCC
Confidence 999988865322110 12 348888888888 9999999998653
No 358
>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}
Probab=99.66 E-value=4.1e-16 Score=166.73 Aligned_cols=195 Identities=15% Similarity=0.180 Sum_probs=119.6
Q ss_pred CCCCCCeEEEEEEEecCceeeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECC--eeC-----
Q psy574 68 SRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLG--SAM----- 140 (977)
Q Consensus 68 v~~~D~G~Y~C~a~n~~g~~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~--~~l----- 140 (977)
.+++|.+.|.|.+.+..|..... ....+...|..+.+.+|++++|.|.+.+ +.+.+.|+|.. ...
T Consensus 3 ~~~~~~~~y~~~~~~~~g~~~~~-------~~~~v~~~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~ 74 (270)
T 3qib_D 3 NERADLIAYLKQATKGGGGSGGG-------GGMKVIQTPRYLVKGQGQKAKMRCIPEK-GHPVVFWYQQNKNNEFKFLIN 74 (270)
T ss_dssp --------------------------------CCCEEECSEEEEETTSCEEEEEECCT-TCCEEEEEEECTTCCEEEEEE
T ss_pred chhhhHHHHHHHHhccCCccccc-------cceeEEeCCCeEEEcCCCCEEEEEEecC-CCceEEEEEECCCCCcEEEEE
Confidence 45789999999999876643211 2234556677788999999999999865 67899999932 110
Q ss_pred -------CC----C-ceEEec----cceEEEccCccCCCeEEEEEEEeCC----eeEEEEEEEEEee------CCeEEe-
Q psy574 141 -------PE----D-RMSVLP----SRSLQLSDVRLEDAGEYVCEAENAV----GKISASATLTVQM------APIVRE- 193 (977)
Q Consensus 141 -------~~----~-~~~~~~----~~~L~I~~v~~~D~G~Y~C~a~n~~----g~~~~~~~L~V~~------~p~~~~- 193 (977)
.. + |+.+.. +.+|.|.+++.+|+|.|+|.+.+.. ......+.|.|.. +|.+..
T Consensus 75 ~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~ 154 (270)
T 3qib_D 75 FQNQEVLQQIDMTEKRFSAECPSNSPCSLEIQSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLEDLKNVFPPEVAVF 154 (270)
T ss_dssp EETTEEEEECHHHHHHEEEECCTTSCEEEEESSCCGGGCEEEEEEEESCTTCCCCEECCCEEEEEESCSTTCBCCEEEEE
T ss_pred ECCCCceecCCccCCcEEEEeCCCcEEEEEECCCCHhHCeEEEEEEecCCCccceEECCcEEEEEccccccccCCceEEE
Confidence 00 0 444432 4589999999999999999999632 2333456777775 565544
Q ss_pred cCCCcEEeeCCeEEEEEEEec-CCCC-eEEEEEcCeeeeecCC-----------CccccEEEEEccCCceEEEEeecccC
Q psy574 194 RPSDLRLEVGRDAVFLCGIEG-SPPP-STFWMLEGNRSLIYPG-----------DRVDNIQAEITSDGMNLLKIQNVSRT 260 (977)
Q Consensus 194 ~p~~~~v~~G~~v~L~C~~~g-~p~~-~i~W~~~g~~~~~~~~-----------~~~~~~~~~~~~~g~s~L~I~~v~~~ 260 (977)
.+....+..|+.++|.|.+.+ .|.+ .+.|+++|..+..... ...+.+.+. +.|.|.....+
T Consensus 155 ~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~------s~L~i~~~~~~ 228 (270)
T 3qib_D 155 EPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALS------SRLRVSATFWQ 228 (270)
T ss_dssp ECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEESCTTSSSCCEEEE------EEEEEEHHHHH
T ss_pred CCCccccccCCceEEEEEecceeCCCeEEEEEECCEECCCCcccccccccccccCCCCCEEEE------EEEEEcHHHhc
Confidence 344445667999999999988 6666 8999999987632100 012333333 27889988888
Q ss_pred C-CCeEEEEEEEcCCCce
Q psy574 261 A-APLIILCLGVNAAGSD 277 (977)
Q Consensus 261 d-~G~Y~~C~a~n~~g~~ 277 (977)
| .|.|+ |.|.|.....
T Consensus 229 d~~g~Yt-C~v~~~~l~~ 245 (270)
T 3qib_D 229 NPRNHFR-CQVQFYGLSE 245 (270)
T ss_dssp STTCEEE-EEEEECCBCT
T ss_pred cCCCeEE-EEEEecCCCC
Confidence 8 99999 9999886543
No 359
>3nfj_J T cell receptor beta chain; immunoglobulin family, immune system; 2.68A {Homo sapiens} PDB: 3hg1_E
Probab=99.66 E-value=3.5e-16 Score=164.59 Aligned_cols=170 Identities=18% Similarity=0.267 Sum_probs=120.4
Q ss_pred ccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeC--CEEe------------ecCCCceEEEec----CcEEEEcC
Q psy574 6 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKN--GHPI------------DFENSKRLRLVD----GTNLAIQD 67 (977)
Q Consensus 6 ~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~--g~~l------------~~~~~~r~~~~~----~g~L~I~~ 67 (977)
..+...|..+.+.+|++|+|.|.+ .+.|.+.|.|+|. +..+ .....+|+.+.. +.+|.|.+
T Consensus 2 ~~v~~~p~~v~v~~G~~v~L~C~~-~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~ 80 (245)
T 3nfj_J 2 QTIHQWPATLVQPVGSPLSLECTV-EGTSNPNLYWYRQAAGRGLQLLFYSVGIGQISSEVPQNLSASRPQDRQFILSSKK 80 (245)
T ss_dssp CEEEEECSEEEEETTCCEEEEEEE-ESCSSCEEEEEEESTTSCEEEEEEESSTTCCBCSSCCSSEEEEEETTEEEEEESS
T ss_pred CeeeCCCceEEecCCCCEEEEEEe-cCCCCceEEEEEECCCCCcEEEEEECCCcccCCccCCcEEEEecCCCEEEEEECC
Confidence 356778889999999999999999 6788999999992 2111 011234555543 23799999
Q ss_pred CCCCCCeEEEEEEEecC-----ceeeeEeEEEEEEc------CCeEEe-CCCceEEeCCCeEEEEEEeccc-Cc-eEEEE
Q psy574 68 SRKTDDGRYQCVVKNVA-----GTRESTDAVLRVLV------KPYIIR-GPKDTTVSASSIIVFECSVGGD-AV-LTVHW 133 (977)
Q Consensus 68 v~~~D~G~Y~C~a~n~~-----g~~~s~~~~l~V~~------~P~~~~-~p~~~~v~~G~~v~l~C~v~g~-p~-~~i~W 133 (977)
++.+|+|.|+|.+.+.. .......+.|.|.. +|.+.. .+....+.+|+.++|.|.+.|. |. ..+.|
T Consensus 81 v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W 160 (245)
T 3nfj_J 81 LLLSDSGFYLCAWSVSVGAGVPTIYFGEGSWLTVVEDLNKVFPPEVAVFEPSEAEISHTQKATLVCLATGFFPDHVELSW 160 (245)
T ss_dssp CCGGGCEEEEEEEECCTTTSSCCCEECCCEEEEEESCGGGCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEE
T ss_pred CChhhCEEEEEEEeeccCCCceeEEECCCeEEEEEcccCCCCCCceEeecCCcccccCCCceEEEEEEccCcCCCEEEEE
Confidence 99999999999999832 22223445778875 555543 3444445669999999999874 43 47999
Q ss_pred EECCeeCCCCceE---------------EeccceEEEccCccCC-CeEEEEEEEeCCee
Q psy574 134 KRLGSAMPEDRMS---------------VLPSRSLQLSDVRLED-AGEYVCEAENAVGK 176 (977)
Q Consensus 134 ~k~~~~l~~~~~~---------------~~~~~~L~I~~v~~~D-~G~Y~C~a~n~~g~ 176 (977)
+|++..+...... ......|.|.....+| .|.|+|.|.|....
T Consensus 161 ~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~~YtC~v~~~~~~ 219 (245)
T 3nfj_J 161 WVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLS 219 (245)
T ss_dssp EETTEEECTTEEECSSCEESSSSSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBC
T ss_pred EECCEECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCeEEEEEEECCCC
Confidence 9999988653211 1112468888888888 67999999987543
No 360
>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L
Probab=99.66 E-value=1e-15 Score=161.77 Aligned_cols=172 Identities=17% Similarity=0.239 Sum_probs=124.3
Q ss_pred CCeEEeCCCceEEeCCCeEEEEEEecccC-----ceEEEEEECCe--eC-------------CCCceEEec---cceEEE
Q psy574 99 KPYIIRGPKDTTVSASSIIVFECSVGGDA-----VLTVHWKRLGS--AM-------------PEDRMSVLP---SRSLQL 155 (977)
Q Consensus 99 ~P~~~~~p~~~~v~~G~~v~l~C~v~g~p-----~~~i~W~k~~~--~l-------------~~~~~~~~~---~~~L~I 155 (977)
.+.+...|..+.+.+|++++|.|.+.+.+ .+.|.|+|++. .+ ..+|+.+.. +.+|.|
T Consensus 34 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I 113 (252)
T 3bkj_L 34 DVLMTQTPLSLPVNLGEQASISCRSSQSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSGSGTDFTLRI 113 (252)
T ss_dssp CCCEEEECSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEE
T ss_pred ccEEEeCCceEEEeCCCcEEEEEEcCCCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEccCCEEEEEE
Confidence 34556667788899999999999998887 68999999642 11 124555542 238999
Q ss_pred ccCccCCCeEEEEEEEeCCee-EEEEEEEEEee---CCeEEecCCCcEEeeCCeEEEEEEEecC-CCC-eEEEEEcCeee
Q psy574 156 SDVRLEDAGEYVCEAENAVGK-ISASATLTVQM---APIVRERPSDLRLEVGRDAVFLCGIEGS-PPP-STFWMLEGNRS 229 (977)
Q Consensus 156 ~~v~~~D~G~Y~C~a~n~~g~-~~~~~~L~V~~---~p~~~~~p~~~~v~~G~~v~L~C~~~g~-p~~-~i~W~~~g~~~ 229 (977)
.+++.+|+|.|+|.+.|..+. ....+.|.|.. +|.+...+....+.+|+.++|.|.+.+. |.+ .+.|+|+|..+
T Consensus 114 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~ 193 (252)
T 3bkj_L 114 SRVEAEDLGVYYCFQASLVPLTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSER 193 (252)
T ss_dssp SSCCGGGCEEEEEEECSBSSCEECCCEEEEECCCCBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEEE
T ss_pred CCCCcccCEEEEEEEEcCCccEECCCEEEEEeCCCcCcEEEEeCCChhhcCCCcEEEEEEEeeEeCCCcEEEEEECCeec
Confidence 999999999999999987653 22345677763 5777665555545589999999999884 443 79999999876
Q ss_pred eec-------CCCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCce
Q psy574 230 LIY-------PGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSD 277 (977)
Q Consensus 230 ~~~-------~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~ 277 (977)
... .....+.+... +.|.|..++.+|+|.|+ |.|.|.....
T Consensus 194 ~~~~~~~~~~~~~~~g~~~~~------s~L~i~~~~~~d~g~Y~-C~a~n~~~~~ 241 (252)
T 3bkj_L 194 QNGVLNSWTDQDSKDSTYSMS------STLTLTKDEYERHNSYT-CEATHKTSTS 241 (252)
T ss_dssp CSSEEEEECCCCTTTCCEEEE------EEEEEEHHHHHHCCEEE-EEEECTTCSS
T ss_pred CCCeeeecCcccCCCCCEEEE------EEEEEcchhccCCCeEE-EEEEeCCCCC
Confidence 321 00011122221 37999999999999999 9999987654
No 361
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Probab=99.66 E-value=1.3e-15 Score=154.85 Aligned_cols=164 Identities=15% Similarity=0.232 Sum_probs=117.9
Q ss_pred ceEEeCCCeEEEEEEec----ccCceEEEEEECCeeCC-------------CCceEE--eccceEEEccCccCCCeEEEE
Q psy574 108 DTTVSASSIIVFECSVG----GDAVLTVHWKRLGSAMP-------------EDRMSV--LPSRSLQLSDVRLEDAGEYVC 168 (977)
Q Consensus 108 ~~~v~~G~~v~l~C~v~----g~p~~~i~W~k~~~~l~-------------~~~~~~--~~~~~L~I~~v~~~D~G~Y~C 168 (977)
.+.+.+|+++.|.|.+. +.|.+.+.|++++..+. .+|..+ ..+.+|.|.+++.+|+|.|+|
T Consensus 3 ~v~v~~G~~v~L~C~~~~~~~~~~~~~~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~L~I~~v~~~D~G~Y~C 82 (201)
T 1dr9_A 3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYEC 82 (201)
T ss_dssp EEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGGGCEEEEE
T ss_pred eEEEEeCCCEEEecccCCCcccccccEEEEEeCCcEEEEEeCCceeecCcccceeEEccCCCcEEEEecccchhCeEEEE
Confidence 45788999999999994 45778999999988762 123332 245789999999999999999
Q ss_pred EEEeCCeeE-----EEEEEEEEeeC---CeEEecCCCcEEeeCCeEEEEEEEe-cCCCCeEEEEEcCeeeeecCCCcccc
Q psy574 169 EAENAVGKI-----SASATLTVQMA---PIVRERPSDLRLEVGRDAVFLCGIE-GSPPPSTFWMLEGNRSLIYPGDRVDN 239 (977)
Q Consensus 169 ~a~n~~g~~-----~~~~~L~V~~~---p~~~~~p~~~~v~~G~~v~L~C~~~-g~p~~~i~W~~~g~~~~~~~~~~~~~ 239 (977)
.|.|..|.. ...+.|.|..+ |.+.... ...|+.++|.|.+. |.|.|.|.|+++|..+.. ...
T Consensus 83 ~~~~~~g~~~~~~~~~~~~l~V~~~~~~p~~~~~~----~~~g~~~~l~C~~~~g~P~p~i~W~k~g~~l~~----~~~- 153 (201)
T 1dr9_A 83 VVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFE----IPTSNIRRIICSTSGGFPEPHLSWLENGEELNA----INT- 153 (201)
T ss_dssp EEEECCTTSCEEEEEEEEEEEEECCCCCCEEEEEE----CSSTTEEEEEEEEEEESSCEEEEEEESSCEECC----SEE-
T ss_pred EEEcCCCCccccccccEEEEEEcCCCCCCceEecc----CCCCCeEEEEEecCCccCCCEEEEEECCEECcc----ccc-
Confidence 999976532 46778888765 4333221 13588999999995 999999999999987641 111
Q ss_pred EEEEEccC-Cc-eEEEEeecccCCCCeEEEEEEEcCCCceeEEEE
Q psy574 240 IQAEITSD-GM-NLLKIQNVSRTAAPLIILCLGVNAAGSDLARAS 282 (977)
Q Consensus 240 ~~~~~~~~-g~-s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~ 282 (977)
......+ +. ....+..+..+|.|.|+ |.|.|..|..+....
T Consensus 154 -~~~~~~~~~~~~~~~~~~v~~~d~g~Y~-C~a~n~~~~~s~~~~ 196 (201)
T 1dr9_A 154 -TVSQDPETELYAVSSKLDFNMTTNHSFM-CLIKYGHLRVNQTFN 196 (201)
T ss_dssp -EEEECTTTCCEEEEEEEEEETTSCEEEE-EEEEETTCCEEEEEE
T ss_pred -eEEecCCCcEEEEEEEEEEEecCCCEEE-EEEecCcceeeeEEe
Confidence 2222212 32 12234556678999999 999999998766544
No 362
>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}
Probab=99.66 E-value=1.9e-15 Score=160.08 Aligned_cols=175 Identities=19% Similarity=0.299 Sum_probs=130.1
Q ss_pred CCeEEeCCCceEEeCCCeEEEEEEecc--cCceEEEEEECC--eeC------------------CCCceEEecc-----c
Q psy574 99 KPYIIRGPKDTTVSASSIIVFECSVGG--DAVLTVHWKRLG--SAM------------------PEDRMSVLPS-----R 151 (977)
Q Consensus 99 ~P~~~~~p~~~~v~~G~~v~l~C~v~g--~p~~~i~W~k~~--~~l------------------~~~~~~~~~~-----~ 151 (977)
+|.+...+....+.+|++++|.|.+.+ .+.+.+.|+|.. ..+ ..+|+.+..+ .
T Consensus 6 ~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~ 85 (256)
T 3juy_B 6 HQVQLVQSGAEVKKPGASVKVSCQASGYRFSHFTVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTA 85 (256)
T ss_dssp -CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEE
T ss_pred ceEEEEecCCceecCCCeEEEEEEeecccccCceEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEecCCCEE
Confidence 466777888999999999999999977 367889999842 111 1245655422 3
Q ss_pred eEEEccCccCCCeEEEEEEEeC------------CeeEEEEEEEEEee---------------CCeEEecCCCcEEeeCC
Q psy574 152 SLQLSDVRLEDAGEYVCEAENA------------VGKISASATLTVQM---------------APIVRERPSDLRLEVGR 204 (977)
Q Consensus 152 ~L~I~~v~~~D~G~Y~C~a~n~------------~g~~~~~~~L~V~~---------------~p~~~~~p~~~~v~~G~ 204 (977)
+|.|.+++.+|+|.|.|.+.|. .+.....+.|.|.. ++.+...|....+.+|+
T Consensus 86 ~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~ 165 (256)
T 3juy_B 86 YMELRSLRSADTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSGGGGSGGGGSGGGGSEIVLTQAPGTLSLSPGE 165 (256)
T ss_dssp EEEECSCCGGGCEEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSCC----------CCCCCCEEEECSEEEECTTS
T ss_pred EEEECCCCcccCEEEEEeEEeccccccccccccceeEECCceEEeecCCcccccccccCCCcceeEEEecCCeEEEeCCC
Confidence 6999999999999999999986 33345567788875 45677778888999999
Q ss_pred eEEEEEEEecCCC-CeEEEEEc--Ceee--eecC-----CCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCC
Q psy574 205 DAVFLCGIEGSPP-PSTFWMLE--GNRS--LIYP-----GDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAA 274 (977)
Q Consensus 205 ~v~L~C~~~g~p~-~~i~W~~~--g~~~--~~~~-----~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~ 274 (977)
+++|.|.+.+.+. +.+.|+|. +... .... .....++.+... .....|.|.+++.+|+|.|. |.|.|..
T Consensus 166 ~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~L~I~~v~~~DsG~Y~-C~~~~~~ 243 (256)
T 3juy_B 166 RATFSCRSSHSIRSRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSGS-GTDFTLTITRVEPEDFALYY-CQVYGAS 243 (256)
T ss_dssp CEEEEEEESSCCTTCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE-TTEEEEEESSCCGGGCSEEE-EEECCSS
T ss_pred CEEEEEEECCCcCCeeEEEEEECCCCCcEEEEEecCccCCccCCcEEEEcc-CCEEEEEECCCCHhHCEEEE-EEEeeCC
Confidence 9999999998876 89999984 2221 1111 112356666543 34468999999999999999 9998864
Q ss_pred C
Q psy574 275 G 275 (977)
Q Consensus 275 g 275 (977)
.
T Consensus 244 ~ 244 (256)
T 3juy_B 244 S 244 (256)
T ss_dssp C
T ss_pred C
Confidence 4
No 363
>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A
Probab=99.66 E-value=1.7e-15 Score=158.81 Aligned_cols=168 Identities=14% Similarity=0.206 Sum_probs=120.8
Q ss_pred ccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEe--------------CCEEee-cCCCceEEEec----CcEEEEc
Q psy574 6 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKK--------------NGHPID-FENSKRLRLVD----GTNLAIQ 66 (977)
Q Consensus 6 ~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k--------------~g~~l~-~~~~~r~~~~~----~g~L~I~ 66 (977)
..+...|..+.+.+|++|+|.|.+ .+ |.+.|.|+| ++.... .....|+.+.. +.+|.|.
T Consensus 3 ~~v~~~p~~v~v~~G~~v~L~C~~-~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~ 80 (240)
T 3q5y_A 3 SGVVQSPRHIIKEKGGRSVLTCIP-IS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMS 80 (240)
T ss_dssp CCCEEECSEEEEETTCCEEEEEEC-CT-TCCEEEEEEECTTSCCEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEEC
T ss_pred cccccCcceeeecCCCcEEEEEEe-CC-CCceEEEEEECCCCCCEEEEEEcCCccccCcccCCeEEEEeCCCCEEEEEEC
Confidence 456778888999999999999998 44 778999999 222221 12235776654 3479999
Q ss_pred CCCCCCCeEEEEEEEec--CceeeeEeEEEEEE------cCCeEE-eCCCceEEeCCCeEEEEEEecc-cCce-EEEEEE
Q psy574 67 DSRKTDDGRYQCVVKNV--AGTRESTDAVLRVL------VKPYII-RGPKDTTVSASSIIVFECSVGG-DAVL-TVHWKR 135 (977)
Q Consensus 67 ~v~~~D~G~Y~C~a~n~--~g~~~s~~~~l~V~------~~P~~~-~~p~~~~v~~G~~v~l~C~v~g-~p~~-~i~W~k 135 (977)
+++.+|+|.|+|.+.+. ........+.|.|. .+|.+. ..+....+.+|+.++|.|.+.| .|.+ .+.|+|
T Consensus 81 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~ 160 (240)
T 3q5y_A 81 ALELEDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWV 160 (240)
T ss_dssp SCCGGGCEEEEEEEESSTTBCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEE
T ss_pred cCChhHCEEEEEEEccCCCcceEEcCCEEEEEeccccCCCCCeeEEeCCchhhcccCCceEEEEEEeeEECCCeEEEEEE
Confidence 99999999999999832 22223344577776 345544 3455556677999999999987 5655 799999
Q ss_pred CCeeCCCCceE-----Eecc------ceEEEccCccCC-CeEEEEEEEeCCe
Q psy574 136 LGSAMPEDRMS-----VLPS------RSLQLSDVRLED-AGEYVCEAENAVG 175 (977)
Q Consensus 136 ~~~~l~~~~~~-----~~~~------~~L~I~~v~~~D-~G~Y~C~a~n~~g 175 (977)
++..+...... ...+ ..|.|..+..+| .|.|+|.|.|...
T Consensus 161 ~g~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~~ 212 (240)
T 3q5y_A 161 NGKEVHSGVSTDPQAYKESNYSYSLSSRLRVSATFWHNPRNHFRCQVQFHGL 212 (240)
T ss_dssp TTEEECTTEEECSSCEEEETTEEEEEEEEEEEHHHHSCTTCEEEEEEEECCB
T ss_pred CCEECcCcEecCCceeeCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCC
Confidence 99988653221 1122 348899998888 6799999998754
No 364
>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...
Probab=99.66 E-value=7.8e-16 Score=159.94 Aligned_cols=167 Identities=15% Similarity=0.206 Sum_probs=117.4
Q ss_pred ecccceEEeCCCcEEEEEECCCCCCC----CeEEEEeC--CEE---e-e----------cCCCceEEEec-----CcEEE
Q psy574 10 VQPKSQRVAAGDTALLECGPPRGHPE----PTLVWKKN--GHP---I-D----------FENSKRLRLVD-----GTNLA 64 (977)
Q Consensus 10 ~~p~~~~v~~G~~v~L~C~~~~g~P~----~~v~W~k~--g~~---l-~----------~~~~~r~~~~~-----~g~L~ 64 (977)
.+|..+.+.+|++|+|.|.+ .+.|. +.|.|+|+ |.. + . ....+|+.+.. +++|.
T Consensus 5 ~qp~~~~v~~G~~v~L~C~~-~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~ 83 (228)
T 3bae_H 5 KESGPGLLKPSQTLSLTCSF-SGFSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTSRDMVFMK 83 (228)
T ss_dssp EEECCSEECTTCCEEEEEEE-ESSCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETTTTEEEEE
T ss_pred eCCCceeecCCCeEEEEEEE-eCcccCCCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCCCCeEEEE
Confidence 35778999999999999999 66664 88999984 221 1 1 11246777653 25799
Q ss_pred EcCCCCCCCeEEEEEEEecCc------e--eeeEeEEEEEEc----CCeEEeCCCceEEeCCCeEEEEEEeccc-Cce-E
Q psy574 65 IQDSRKTDDGRYQCVVKNVAG------T--RESTDAVLRVLV----KPYIIRGPKDTTVSASSIIVFECSVGGD-AVL-T 130 (977)
Q Consensus 65 I~~v~~~D~G~Y~C~a~n~~g------~--~~s~~~~l~V~~----~P~~~~~p~~~~v~~G~~v~l~C~v~g~-p~~-~ 130 (977)
|.+++.+|+|.|+|.+.+..| . .....+.|.|.. +|.+...+....+.+|+.++|.|.+.|. |.+ .
T Consensus 84 I~~v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~~~l~C~~~g~~P~p~~ 163 (228)
T 3bae_H 84 ITSVDTADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVT 163 (228)
T ss_dssp ECSCCGGGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECSCCCBCCEEEEECC-----CCSEEEEEEEEEEEBSSCCE
T ss_pred EcCCCcccCEEEEEEEecCCCccccccceeeeCCcEEEEecCCCCCCCEEEEecccccccCCCCEEEEEEEccEeCCCEE
Confidence 999999999999999998764 1 122346788873 4655544333446789999999999875 777 9
Q ss_pred EEEEECCeeCCCCc-e------EEeccceEEEccCccCCCeEEEEEEEeCCeeEE
Q psy574 131 VHWKRLGSAMPEDR-M------SVLPSRSLQLSDVRLEDAGEYVCEAENAVGKIS 178 (977)
Q Consensus 131 i~W~k~~~~l~~~~-~------~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~ 178 (977)
|.|++++..+.... . .......|.|.++..+| |.|+|.|.|..+...
T Consensus 164 v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~-g~YtC~~~n~~~~~~ 217 (228)
T 3bae_H 164 LTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-ESITCNVAHPASSTK 217 (228)
T ss_dssp EEEGGGTCCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEE
T ss_pred EEEeeCCcccCceEcCceeCCCcEEEEEEEEEEhhhcCC-CcEEEEEEECCCCCC
Confidence 99999987642110 0 11123568999988866 999999999887643
No 365
>2ee2_A Contactin-1; neural cell surface protein F3, glycoprotein GP135, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=1.1e-15 Score=140.79 Aligned_cols=112 Identities=20% Similarity=0.280 Sum_probs=98.8
Q ss_pred eeCCCCCceEEeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecC--CcceEEEEecCCcCeE
Q psy574 624 VDGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGN--NSALINMTVSASTPTL 701 (977)
Q Consensus 624 g~g~~s~~~~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~--~~~~~~~~~~~~~~~~ 701 (977)
|.|++|..+.++|.+++|+.+|.++++...+.++|.|+|++|. . |.|++|+|+|+..+ ........+.++.+++
T Consensus 1 G~g~~S~~~~~~T~~~~P~~~P~~l~~~~~~~~sv~l~W~~p~--~--g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~ 76 (119)
T 2ee2_A 1 GSSGSSGVAVINSAQDAPSEAPTEVGVKVLSSSEISVHWEHVL--E--KIVESYQIRYWAAHDKEEAANRVQVTSQEYSA 76 (119)
T ss_dssp CCCCCSSCCCCCCCSCCCCCCCCSCEEEEEETTEEEEECCCCS--C--TTCCEEEEEEEESSSCGGGCEEEEEETTCSEE
T ss_pred CCCCCCCCEEEECCCcCCCCCCCcEEEEEccCCEEEEEecCCC--C--CccceEEEEEEECCCcccCcEEEEcCCCEeEE
Confidence 5788899999999999999899999999999999999999994 3 88999999998864 2233455666778899
Q ss_pred EecCCCCCceEEEEEEEEcCCCcCCCCCceEEeecCCC
Q psy574 702 LLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGP 739 (977)
Q Consensus 702 ~l~~L~p~t~Y~~~V~A~~~~G~g~~S~~~~~~t~~~~ 739 (977)
+|.+|+|++.|.|+|+|+|.+|.|++|.++.++|....
T Consensus 77 ~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~~~~ 114 (119)
T 2ee2_A 77 RLENLLPDTQYFIEVGACNSAGCGPPSDMIEAFTKKAS 114 (119)
T ss_dssp EECSCCTTCEEEEEEEEECSSSCCCCCCCEEEECCCCC
T ss_pred EECCCCCCCEEEEEEEEEcCCccCCCCCCEEEECCCCC
Confidence 99999999999999999999999999999999998765
No 366
>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}
Probab=99.66 E-value=8.1e-16 Score=164.17 Aligned_cols=168 Identities=18% Similarity=0.267 Sum_probs=120.3
Q ss_pred ccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEe--CCEE------------ee-cCCC-ceEEEec----CcEEEE
Q psy574 6 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKK--NGHP------------ID-FENS-KRLRLVD----GTNLAI 65 (977)
Q Consensus 6 ~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k--~g~~------------l~-~~~~-~r~~~~~----~g~L~I 65 (977)
+.+...|..+.+.+|++++|.|.+ . .+.+.|.|+| .+.. .. .... +|+.+.. +++|.|
T Consensus 27 ~~v~~~p~~v~v~~G~~v~L~C~~-~-~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I 104 (268)
T 3pl6_D 27 AGVSQTPSNKVTEKGKYVELRCDP-I-SGHTALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVRPEGSVSTLKI 104 (268)
T ss_dssp SSCBCCCSEEEEETTCCEEEEEBC-B-TTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEE
T ss_pred ceeEeCCCEEEecCCCCEEEEEEe-C-CCCceEEEEEECCCCCcEEEEEECCCCccccCCCccCcEEEEecCCCEEEEEE
Confidence 456677888999999999999998 3 5778999999 2221 11 1111 6777765 457999
Q ss_pred cCCCCCCCeEEEEEEEecC-ceeeeEeEEEEEEc------CCeEE-eCCCceEEeCCCeEEEEEEecccCce--EEEEEE
Q psy574 66 QDSRKTDDGRYQCVVKNVA-GTRESTDAVLRVLV------KPYII-RGPKDTTVSASSIIVFECSVGGDAVL--TVHWKR 135 (977)
Q Consensus 66 ~~v~~~D~G~Y~C~a~n~~-g~~~s~~~~l~V~~------~P~~~-~~p~~~~v~~G~~v~l~C~v~g~p~~--~i~W~k 135 (977)
.+++.+|+|.|+|.+.+.. .......+.|.|.. +|.+. ..+....+.+|+.++|.|.+.|.+++ .+.|+|
T Consensus 105 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~~ 184 (268)
T 3pl6_D 105 QRTERGDSAVYLCATSALGDTQYFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWV 184 (268)
T ss_dssp CSCCGGGCEEEEEEEESSSSSCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEE
T ss_pred CCCCcccCEEEEEEEecCCCceeeCCcEEEEEecCcccccCCceEEeCCCcccccCCCceEEEEEECcccCCCeEEEEEE
Confidence 9999999999999999742 22223445677775 55543 34555566779999999999875443 899999
Q ss_pred CCeeCCCCceE---------------EeccceEEEccCccCC-CeEEEEEEEeCCe
Q psy574 136 LGSAMPEDRMS---------------VLPSRSLQLSDVRLED-AGEYVCEAENAVG 175 (977)
Q Consensus 136 ~~~~l~~~~~~---------------~~~~~~L~I~~v~~~D-~G~Y~C~a~n~~g 175 (977)
+|..+..+... ..-...|.|.....+| .|.|+|.|.|...
T Consensus 185 ~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~l 240 (268)
T 3pl6_D 185 NGKEVHSGVCTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGL 240 (268)
T ss_dssp SSSEECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCB
T ss_pred CCEECCCCeEeccccccccccCCCCcEEEEEEEEEcHHHhccCCCEEEEEEEcCCC
Confidence 99887543211 1112457777777777 9999999998754
No 367
>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1
Probab=99.66 E-value=1.1e-15 Score=159.98 Aligned_cols=171 Identities=15% Similarity=0.233 Sum_probs=126.4
Q ss_pred eEEeCCCceEEeCCCeEEEEEEecccC----ceEEEEEECC--eeC-------------CCCceEEec---cceEEEccC
Q psy574 101 YIIRGPKDTTVSASSIIVFECSVGGDA----VLTVHWKRLG--SAM-------------PEDRMSVLP---SRSLQLSDV 158 (977)
Q Consensus 101 ~~~~~p~~~~v~~G~~v~l~C~v~g~p----~~~i~W~k~~--~~l-------------~~~~~~~~~---~~~L~I~~v 158 (977)
.+...|....+.+|++++|.|.+.+.| .+.|.|+|++ ..+ ...|+.+.. ..+|.|.++
T Consensus 3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v 82 (240)
T 1moe_A 3 VLTQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPV 82 (240)
T ss_dssp CEEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSC
T ss_pred ceEeeCCeEEecCCCCEEEEEeCCCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEecCCeEEEEEcCC
Confidence 345567788999999999999998887 7899999963 211 123555432 237999999
Q ss_pred ccCCCeEEEEEEEeCCee-EEEEEEEEEeeCC------eEEecCCCcEEeeCCeEEEEEEEecCCC--CeEEEEEc--Ce
Q psy574 159 RLEDAGEYVCEAENAVGK-ISASATLTVQMAP------IVRERPSDLRLEVGRDAVFLCGIEGSPP--PSTFWMLE--GN 227 (977)
Q Consensus 159 ~~~D~G~Y~C~a~n~~g~-~~~~~~L~V~~~p------~~~~~p~~~~v~~G~~v~L~C~~~g~p~--~~i~W~~~--g~ 227 (977)
+.+|+|.|+|.|.|..+. ....+.|.|..++ .+...+....+.+|++++|.|.+.+.|. +.+.|+|+ +.
T Consensus 83 ~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~ 162 (240)
T 1moe_A 83 EADDVATYYCQQTNEDPYTFGGGTKLEIKGGGSGGGGEVQLQQSGAELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQ 162 (240)
T ss_dssp CGGGCEEEEEEECSSSSCCBCCCEEEEECCCSCCCCCCCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTS
T ss_pred ChhhCEEEEEEEccCCceeecCCEEEEEecCCCCCCceEEEeCCCceEEeCCCcEEEEEEEcCccCCCCEEEEEEECCCC
Confidence 999999999999998654 4455678887543 3455677888999999999999998874 58999996 32
Q ss_pred eee----ec--------CCCccccEEEEEcc-CCceEEEEeecccCCCCeEEEEEEEc
Q psy574 228 RSL----IY--------PGDRVDNIQAEITS-DGMNLLKIQNVSRTAAPLIILCLGVN 272 (977)
Q Consensus 228 ~~~----~~--------~~~~~~~~~~~~~~-~g~s~L~I~~v~~~d~G~Y~~C~a~n 272 (977)
... .. ......++.+.... .+...|.|.+++.+|+|.|+ |.|.+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~-C~a~~ 219 (240)
T 1moe_A 163 GLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTSEDTAVYY-CAPFG 219 (240)
T ss_dssp CCEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEE-EEECS
T ss_pred CcEEEEEEcccCCccccCccccccEEEEEcccCCEEEEEECcCCHHHCEEEE-EEEEe
Confidence 211 00 01123567666432 34468999999999999999 99985
No 368
>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A
Probab=99.65 E-value=2.5e-15 Score=159.32 Aligned_cols=183 Identities=19% Similarity=0.308 Sum_probs=130.0
Q ss_pred EeCCCceEEeCCCeEEEEEEeccc--CceEEEEEECC--ee---C--------------CCCceEEecc-----ceEEEc
Q psy574 103 IRGPKDTTVSASSIIVFECSVGGD--AVLTVHWKRLG--SA---M--------------PEDRMSVLPS-----RSLQLS 156 (977)
Q Consensus 103 ~~~p~~~~v~~G~~v~l~C~v~g~--p~~~i~W~k~~--~~---l--------------~~~~~~~~~~-----~~L~I~ 156 (977)
+..|....+.+|++++|.|.+.+. +.+.+.|+|.. .. + ..+|+.+..+ .+|.|.
T Consensus 12 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~ 91 (257)
T 3gkz_A 12 LQESGPSLVKPSQTLSLTCSVTGDSVTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDTSKNQVYLQLK 91 (257)
T ss_dssp EEEECCSEECTTCCEEEEEEEEESCCSSCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEGGGTEEEEEEC
T ss_pred EECCCCeEEcCCCcEEEEEEEEcccccceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEecCCceEEEEEC
Confidence 344566779999999999999874 47899999942 11 1 1245555432 269999
Q ss_pred cCccCCCeEEEEEEEeC----CeeEEEEEEEEEeeC--------------CeEEecCCCcEEeeCCeEEEEEEEecCCCC
Q psy574 157 DVRLEDAGEYVCEAENA----VGKISASATLTVQMA--------------PIVRERPSDLRLEVGRDAVFLCGIEGSPPP 218 (977)
Q Consensus 157 ~v~~~D~G~Y~C~a~n~----~g~~~~~~~L~V~~~--------------p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~ 218 (977)
+++.+|+|.|+|.|.|. .......+.|.|..+ +.+...|....+.+|++++|.|.+.+.+.+
T Consensus 92 ~v~~~DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~ 171 (257)
T 3gkz_A 92 SVSSEDTATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQSPAIMSASPGEKVTLTCSASSSVSS 171 (257)
T ss_dssp SCCGGGCEEEEEEEECTTCTTCEEECCCEEEEEC---------CTTCCCCCCEECSCSEEEECTTCCEEEEEEESSCCCG
T ss_pred CCChhhCEEEEEEEecCCCcceeEEcCCEEEeecCchhhcccccCCCccceEEEcCCceEEEeCCCcEEEEEEEccCccc
Confidence 99999999999999986 223445667888765 566667777899999999999999998877
Q ss_pred -eEEEEEc--Ceeee--ecC-----CCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCcee-EEEEEEEEC
Q psy574 219 -STFWMLE--GNRSL--IYP-----GDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDL-ARASLTVSG 287 (977)
Q Consensus 219 -~i~W~~~--g~~~~--~~~-----~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~-~~~~l~V~~ 287 (977)
.+.|+|+ +.... ... .....++..... .+...|.|.+++.+|+|.|. |.|.+...... .-..|.|..
T Consensus 172 ~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~L~I~~v~~~D~G~Y~-C~~~~~~~~~fg~gt~l~v~~ 249 (257)
T 3gkz_A 172 SHLYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGS-GTSYSLTISSMEAEDAASYF-CHQWSSFPFTFGSGTKLEIKR 249 (257)
T ss_dssp GGEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE-TTEEEEEESSCCGGGCEEEE-EEECSSSSCEECCCEEEEECC
T ss_pred eEEEEEEECCCCCcEEEEEEccccCCCcCCCEEEecC-CCEEEEEECCCChHHCEEEE-EEEccCCceEEcCCEEEEEEe
Confidence 8999985 22211 110 111356665542 34468999999999999999 99987654332 234677765
No 369
>1wfo_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=99.65 E-value=3.3e-16 Score=146.88 Aligned_cols=121 Identities=25% Similarity=0.249 Sum_probs=106.2
Q ss_pred EEEEeecceeCCCCC-ceEEeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCC--cceEEE
Q psy574 616 FLVPFFGSVDGKPSN-LRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNN--SALINM 692 (977)
Q Consensus 616 ~V~a~n~~g~g~~s~-~~~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~--~~~~~~ 692 (977)
.|+|+|..|.|++|. .+.++|.+++|. +|.++++...+.+++.|+|++| ...+|.|++|+|+|+..+. ......
T Consensus 2 sV~A~n~~G~g~~S~~~~~~~t~~~~P~-~P~~l~~~~~~~~sv~l~W~~p--~~~~g~i~~Y~v~~~~~~~~~~~~~~~ 78 (130)
T 1wfo_A 2 SSGSSGRIGDGSPSHPPILERTLDDVPG-PPMGILFPEVRTTSVRLIWQPP--AAPNGIILAYQITHRLNTTTANTATVE 78 (130)
T ss_dssp CCCCCCCCCCCCCCCCCSCCCCSCCCCC-CCCCCEEEEECSSEEEEECCCC--SCCCSCCCEEEEEEEESSCCCSCCCEE
T ss_pred eeEEEecccCCCCCCCcEEEEcCCCCCC-CCCceEEEecCCCEEEEEEcCC--CCCCCceEEEEEEEEECCCCCceEEEE
Confidence 377899999999997 589999999996 8899999999999999999998 6789999999999998652 233334
Q ss_pred EecCCcCeEEecCCCCCceEEEEEEEEcCCCcCCCCCceEEeecCCC
Q psy574 693 TVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGP 739 (977)
Q Consensus 693 ~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~~G~g~~S~~~~~~t~~~~ 739 (977)
.+..+.++++|.+|+|++.|.|+|+|+|.+|.|++|..+.++|....
T Consensus 79 ~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~~~~ 125 (130)
T 1wfo_A 79 VLAPSARQYTATGLKPESVYLFRITAQTRKGWGEAAEALVVTTEKRS 125 (130)
T ss_dssp EECTTCCEEEEESCCSSSEEEEEEEEECSSCEEEEEEEEEECCSSCC
T ss_pred EeCCCceEEEEcCCCCCCEEEEEEEEEeCCcCCCCcccEEEecCCCC
Confidence 66788999999999999999999999999999999999999887655
No 370
>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H
Probab=99.65 E-value=1.5e-15 Score=158.19 Aligned_cols=175 Identities=15% Similarity=0.182 Sum_probs=116.7
Q ss_pred ecccceEEeCCCcEEEEEECCCCCC--CCeEEEEeCC--E---Eee-----------cCCCceEEEecC-----cEEEEc
Q psy574 10 VQPKSQRVAAGDTALLECGPPRGHP--EPTLVWKKNG--H---PID-----------FENSKRLRLVDG-----TNLAIQ 66 (977)
Q Consensus 10 ~~p~~~~v~~G~~v~L~C~~~~g~P--~~~v~W~k~g--~---~l~-----------~~~~~r~~~~~~-----g~L~I~ 66 (977)
.+|..+.+.+|++++|.|.+ .+.+ .+.|.|+|+. . .+- ....+|+.+..+ .+|.|.
T Consensus 5 ~qp~~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~ 83 (232)
T 1dn0_B 5 QQWGAGLLKPSETLSLTCAV-YGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLS 83 (232)
T ss_dssp EEECCCEECTTSCEEEEEEE-ESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEEC
T ss_pred ECCCCEEEeCCCcEEEEEEE-ccccCCCceEEEEEeCCCCCeEEEEEEecCCceeeCCccCCeEEEEEeCCCCEEEEEEC
Confidence 45778899999999999998 4543 5789999842 2 110 112467776531 279999
Q ss_pred CCCCCCCeEEEEEEEecCc--e---eeeEeEEEEEEc----CCeEEe-CCCceEEeCC-CeEEEEEEeccc-Cce-EEEE
Q psy574 67 DSRKTDDGRYQCVVKNVAG--T---RESTDAVLRVLV----KPYIIR-GPKDTTVSAS-SIIVFECSVGGD-AVL-TVHW 133 (977)
Q Consensus 67 ~v~~~D~G~Y~C~a~n~~g--~---~~s~~~~l~V~~----~P~~~~-~p~~~~v~~G-~~v~l~C~v~g~-p~~-~i~W 133 (977)
+++.+|+|.|.|.+.+..+ . .....+.|.|.. +|.+.. .|. ..+.+| +.++|.|.+.|. |.+ .|.|
T Consensus 84 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~-~~~~~g~~~v~L~C~~~g~~P~p~~v~W 162 (232)
T 1dn0_B 84 SVTAADTAVYYCARPPHDTSGHYWNYWGQGTLVTVSSGSASAPTLFPLVSC-ENSPSDTSSVAVGCLAQDFLPDSITFSW 162 (232)
T ss_dssp SCCGGGCEEEEEEECSSTTSCSCCSEECCCEEEEECSSCCBCCEEEEEECC-------CCSEEEEEEEEEEBSSCCEEEE
T ss_pred CCCcccCEEEEEEEecCCcCCchhhhcccceEEEEccCCCCCCceEEeccc-cccCCCCCcEEEEEEEEEEeCCCeEEEE
Confidence 9999999999999984221 1 122345788875 354443 233 235578 999999999775 776 9999
Q ss_pred EE-CCeeCCCC----c----eEEeccceEEEccCcc--CCCeEEEEEEEeCCeeEEEEEEEEEe
Q psy574 134 KR-LGSAMPED----R----MSVLPSRSLQLSDVRL--EDAGEYVCEAENAVGKISASATLTVQ 186 (977)
Q Consensus 134 ~k-~~~~l~~~----~----~~~~~~~~L~I~~v~~--~D~G~Y~C~a~n~~g~~~~~~~L~V~ 186 (977)
++ ++..+... . ........|.|..... +|.|.|+|.|.|..+.......+.|.
T Consensus 163 ~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~ytC~v~n~~~~~~~~~~i~~~ 226 (232)
T 1dn0_B 163 KYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGNKEKNVPLPVI 226 (232)
T ss_dssp EETTSCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEECTTCCEEEEEECCC-
T ss_pred EcCCCCceeeEEECCccccCCcEEEEEEEEEcHHHhcccCCCeEEEEEEeCCCCcceeEecCCC
Confidence 99 88776430 0 0111235688988887 88999999999998876555554443
No 371
>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*
Probab=99.65 E-value=3e-15 Score=154.41 Aligned_cols=173 Identities=18% Similarity=0.277 Sum_probs=124.4
Q ss_pred CCceEEeCCCeEEEEEEecccCce---EEEEEECCeeCC-----------------CCceEEe----------ccceEEE
Q psy574 106 PKDTTVSASSIIVFECSVGGDAVL---TVHWKRLGSAMP-----------------EDRMSVL----------PSRSLQL 155 (977)
Q Consensus 106 p~~~~v~~G~~v~l~C~v~g~p~~---~i~W~k~~~~l~-----------------~~~~~~~----------~~~~L~I 155 (977)
|.++.+..|++++|.|.+.+.+.+ .|.|+|++..+. ..+.... .+.+|.|
T Consensus 8 p~~V~~~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I 87 (225)
T 4fmk_A 8 LPEVRGRLGGTVELPCHLLPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATLAF 87 (225)
T ss_dssp CSEEEEETTSCEEECCEECSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCCEEE
T ss_pred CCEEEEecCCCEEEEEEEECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcEEEEE
Confidence 445678899999999999876654 489999865431 1122211 3467999
Q ss_pred ccCccCCCeEEEEEEEeCCee-EEEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEE-ecCCCCeEEEEEcCeeeeecC
Q psy574 156 SDVRLEDAGEYVCEAENAVGK-ISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGI-EGSPPPSTFWMLEGNRSLIYP 233 (977)
Q Consensus 156 ~~v~~~D~G~Y~C~a~n~~g~-~~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~-~g~p~~~i~W~~~g~~~~~~~ 233 (977)
.+++.+|+|.|+|.|.|..+. ......+.+..+|.+...+.......+..+.+.|.+ .+.|++.+.|++++..+....
T Consensus 88 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~P~~~~~w~~~~~~~~~~~ 167 (225)
T 4fmk_A 88 RGLRVEDEGNYTCEFATFPNGTRRGVTWLRVIAQPENHAEAQEVTIGPQSVAVARCVSTGGRPPARITWISSLGGEAKDT 167 (225)
T ss_dssp CSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEEEECCBCCSSSCEEEEEEEEEEEBSCCEEEEECSSCCEEEEE
T ss_pred ccCCHHHCcceEEEEEeCCCcceeeeeeeeeecCCceeecccceeecceeeeeeeeeecCCCCCCEEEEEECCccccCCc
Confidence 999999999999999987665 445566777778877777777777788888887766 567888999999886553211
Q ss_pred ---CCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEE
Q psy574 234 ---GDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTV 285 (977)
Q Consensus 234 ---~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V 285 (977)
....+.+.+. +.|.|.++..+|+|.|+ |.|.|..+.....+.+.+
T Consensus 168 ~~~~~~~~~~~~~------s~L~i~~~~~~d~g~Yt-C~a~N~~~~~~~~~~v~l 215 (225)
T 4fmk_A 168 QEPGIQAGTVTII------SRYSLVPVGRADGVKVT-CRVEHESFEEPILLPVTL 215 (225)
T ss_dssp EEECSSTTCEEEE------EEEEECCCGGGTTCEEE-EEEECTTCSSCEEEEEEC
T ss_pred ceEEecCCCEEEE------EEEEEeeCCHHHCCEEE-EEEEcCCCCeEEEEEEEE
Confidence 1111222221 37999999999999999 999999887655544433
No 372
>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}
Probab=99.65 E-value=4.9e-17 Score=167.77 Aligned_cols=168 Identities=14% Similarity=0.201 Sum_probs=115.5
Q ss_pred cccceecccceE--EeCCCcEEEEEECCCCC---C-CCeEEEEeCCEEeecCC--------CceEEEecCcEEEEcCCCC
Q psy574 5 REEFRVQPKSQR--VAAGDTALLECGPPRGH---P-EPTLVWKKNGHPIDFEN--------SKRLRLVDGTNLAIQDSRK 70 (977)
Q Consensus 5 ~~~~~~~p~~~~--v~~G~~v~L~C~~~~g~---P-~~~v~W~k~g~~l~~~~--------~~r~~~~~~g~L~I~~v~~ 70 (977)
.|.+.+.|.... +.+|++++|.|.+ .+. | .+.|.|+|++..+.... ++++. ..+.|.|.+++.
T Consensus 9 ~p~v~~~pp~~~~~v~~G~~v~L~C~~-~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~--~~~~L~I~~~~~ 85 (218)
T 2rgs_A 9 GPSVFIFPPNIKDVLMISLTPKVTCVV-VDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTIR--VVSTLPIQHQDW 85 (218)
T ss_dssp CCEEEEECCCHHHHHCTTSCCEEEEEE-EEECTTSCCEEEEEEETTEEECCCEEEEEEETTTTEEE--EEEEEECCHHHH
T ss_pred CCEEEEECcCHHHhhccCCCeeEEEEE-cCCccCCCceEEEEEECCccccCcccccccccCCCeEE--EEEEEEEcHHHc
Confidence 455666666655 8999999999999 454 4 37999999998874211 11222 135799999999
Q ss_pred CCCeEEEEEEEecCcee-eeEeEEE--EEEcCCeEEeCCCceEEeCCCeEEEEEEecc-cCce-EEEEEECCeeCCCC--
Q psy574 71 TDDGRYQCVVKNVAGTR-ESTDAVL--RVLVKPYIIRGPKDTTVSASSIIVFECSVGG-DAVL-TVHWKRLGSAMPED-- 143 (977)
Q Consensus 71 ~D~G~Y~C~a~n~~g~~-~s~~~~l--~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~g-~p~~-~i~W~k~~~~l~~~-- 143 (977)
+|+|.|+|.|.|..+.. ....+.+ .+..+|.+...+......+|+.++|.|.+.| .|.+ .|.|+|++..+...
T Consensus 86 ~D~g~Y~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~ 165 (218)
T 2rgs_A 86 MSGKEFKCKVNNKDLPSPIERTISKIKGLVRAPQVYILPPPAEQLSRKDVSLTCLVVGFNPGDISVEWTSNGHTEENYKD 165 (218)
T ss_dssp HTTCCEEEEEEETTCSSCEEEEECCCCCCCBCCEEEEECCCGGGTTSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEE
T ss_pred CCCCeEEEEEECCcCCCcceEEEeecCCCCCCCEEEEECCChHHhcCCceEEEEEEEeeeCCCcEEEEEECCEeccCcee
Confidence 99999999999986643 1222222 4456777765554433346999999999988 5765 99999999887532
Q ss_pred -ceEEeccce------EEEccCccCCCeEEEEEEEeCCe
Q psy574 144 -RMSVLPSRS------LQLSDVRLEDAGEYVCEAENAVG 175 (977)
Q Consensus 144 -~~~~~~~~~------L~I~~v~~~D~G~Y~C~a~n~~g 175 (977)
+.....+++ |.|.....+|.|.|+|.|.|...
T Consensus 166 ~~~~~~~~gt~~~~s~l~v~~~~~~d~g~YtC~a~n~~l 204 (218)
T 2rgs_A 166 TAPVLDSDGSYFIYSKLNMKTSKWEKTDSFSCNVRHEGL 204 (218)
T ss_dssp CCCEECTTSCEEEEEEEEEEHHHHHHCSCEEEEEECTTS
T ss_pred cccEECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCC
Confidence 111123443 44444445569999999999764
No 373
>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding homology region (CHR), cell MEMB disease mutation, glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo sapiens}
Probab=99.65 E-value=4.6e-15 Score=168.15 Aligned_cols=263 Identities=15% Similarity=0.139 Sum_probs=176.2
Q ss_pred CCCceeecCCCcEEEEEEEccCceEEEEECCEEcCCCCcEE-Ee-cCceEEEeccCCC--CCeEEEEEEEcCCCceEEEE
Q psy574 299 GPANQTLPLRSEARLRCQVRGEGSVQWWRGEREVGSGPRVN-VT-GDGSLVLTDVTKE--DSGEYTCVVKSPHGSASWSA 374 (977)
Q Consensus 299 ~p~~~~v~~g~~~~L~C~~~~~p~i~W~~~g~~l~~~~~~~-~~-~~~sl~I~~v~~~--d~G~Y~C~a~n~~G~~~~s~ 374 (977)
.|.+..+..|+++++.|..... ......++.. .... +. ....++|.++... ...+|.|.... ....+
T Consensus 204 fP~~~vv~~GS~vt~~Ci~~~~-~~~~~l~~~~----~~~~~l~~~~~~i~v~nl~~~~~sg~n~~C~~~~----~~~g~ 274 (483)
T 3e0g_A 204 FPQDKVILVGSDITFCCVSQEK-VLSALIGHTN----CPLIHLDGENVAIKIRNISVSASSGTNVVFTTED----NIFGT 274 (483)
T ss_dssp ESCSEEEETTCCEEEEECCSSC-EEEEESSSCC----BCCEECSSSCEEEEECSCCCCCSSCEEEEEEESS----CEEEE
T ss_pred eccCCEEeCCCCEEEEEEeCcc-ccceecCccc----ceeEEecCCEEEEEEeCCCCccCccceEEEecCC----cccce
Confidence 3566778999999999988752 1222222211 1111 11 1234777777653 33469998532 34455
Q ss_pred EEEEECCCCCCCcccCCCCCCCCCCCCCCCeEEeeCCCceEEEEEcCCCCC--CcccceEEEEEeecCCCCCCCCCCCCc
Q psy574 375 SLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGLTLAWSRNNQIG--SSSLLGYQVEMYSRPLPSSSPSGDTAT 452 (977)
Q Consensus 375 ~l~v~~~~~~~~~~~~~~~~~~~p~~P~~~~v~~~~~~sv~lsW~~p~~~~--~~~i~~Y~I~~~~~~~~~~~~~~~~~~ 452 (977)
.+.+. .+|++|.++.+......++.++|.++.+.+ +...+.|.|.|+....
T Consensus 275 ~l~vg----------------~PP~~P~nlsC~s~~~~sltCsW~pg~dt~l~G~~~t~YtL~y~~~g~----------- 327 (483)
T 3e0g_A 275 VIFAG----------------YPPDTPQQLNCETHDLKEIICSWNPGRVTALVGPRATSYTLVESFSGK----------- 327 (483)
T ss_dssp EEEEE----------------CCCCCCEEEEEEBSSTTEEEEEEECCSCCSCCGGGCCEEEEEETTTCC-----------
T ss_pred EEECc----------------CCCCCCCccEEEecCCCEEEEEECCCCcCCcCCCCCeeEEEEEEECCC-----------
Confidence 67666 448899999998888889999999987732 3348999999874321
Q ss_pred ccEEEece----ecCcCeEEEEccCCCCeEEEEEEEEcCCCCCCCCCCCceEEeeccccccccccCCcceeecCCCCCCC
Q psy574 453 ATWVRVAT----NVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGR 528 (977)
Q Consensus 453 ~~w~~~~~----~~~~~~~~i~~L~p~t~Y~~~V~a~n~~G~s~~S~~s~~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~ 528 (977)
...... ......+.+..|.+.+.|.|+|.|.|..|.+. |. ..+. ......|
T Consensus 328 --~~~C~~~~~~~~~~~~C~~~~l~~~t~Y~f~V~A~N~lG~~~-S~----~~~~-~~~~VkP----------------- 382 (483)
T 3e0g_A 328 --YVRLKRAEAPTNESYQLLFQMLPNQEIYNFTLNAHNPLGRSQ-ST----ILVN-ITEKVYP----------------- 382 (483)
T ss_dssp --EEEECCCSSCSCSCEEEEEECCTTCCCEEEEEEEECSSCEEE-EE----EEEC-GGGGBCC-----------------
T ss_pred --CccccCCcccCCCEEEEEEccCCCCcEEEEEEEEEeCCCCcc-cc----eEEE-eccccCC-----------------
Confidence 111111 12344678999999999999999999988765 21 1221 1111122
Q ss_pred cchHHHHhhcccccCCceEEEEEeeEeCCCeEEEEEEec--CCCccceEEEEEEecCCCCCceEEEEee-cCccceEEEC
Q psy574 529 GESLRRARQHLQEGGGSLIELTEVKPMTSTSVKLTWEIL--NTDYIEGVYIYSRGLDPPASVAMLTVLH-AGEASGFLVT 605 (977)
Q Consensus 529 g~~~~~~~~~l~~~~~~~~~~l~~~~~~~tsv~lsW~~p--~~~~i~~Y~v~y~~~~~~~~~~~~~~~~-~~~~~~~~i~ 605 (977)
.+|.++++...+++++.|+|++| .+..+..|+|+|+..+....|....+.. .....++.|.
T Consensus 383 ----------------~PP~nl~v~~~~stsl~LsW~~P~~~~~~~L~YeVrYr~~~~~~~~~~vsv~~~~~~~~s~~l~ 446 (483)
T 3e0g_A 383 ----------------HTPTSFKVKDINSTAVKLSWHLPGNFAKINFLCEIEIKKSNSVQEQRNVTIQGVENSSYLVALD 446 (483)
T ss_dssp ----------------CCCEEEEECCSSSSSCCEEEECCSCCTTSBCCCEEEEECSSSCCCEEECCCBCCSSSBCCCCCC
T ss_pred ----------------CCCeeeEEEEecCCeEEEEECCCCCCCCceEEEEEEEEECCCCCceEEEEEeccCCceeEEEEe
Confidence 23377888888899999999999 3456789999999987544554332221 1223468999
Q ss_pred CCCCCcEEEEEEEEeeccee---CCCCCceEEeccCC
Q psy574 606 GLAHYSRYEFFLVPFFGSVD---GKPSNLRAVRTLEC 639 (977)
Q Consensus 606 ~L~p~t~Y~~~V~a~n~~g~---g~~s~~~~~~T~~~ 639 (977)
+|+|++.|.|+|+|. ..|. |++|..+.++|.|+
T Consensus 447 ~L~PgT~Y~vrVRA~-~~g~g~WSeWS~~~~f~T~E~ 482 (483)
T 3e0g_A 447 KLNPYTLYTFRIRCS-TETFWKWSKWSNKKQHLTTEA 482 (483)
T ss_dssp SCCSSSSCEEEEECC-CSSCCCCCCCCCCCCCCCCCC
T ss_pred ccCCCcEEEEEEEEe-eCCCCCcCCCCCceeeECCCC
Confidence 999999999999999 6665 67778888999875
No 374
>3n1f_C Cell adhesion molecule-related/DOWN-regulated BY; binding sites, calcium, cell adhesion molecules, cell cycle cell LINE, conserved sequence; 1.60A {Homo sapiens} SCOP: b.1.2.1 PDB: 3d1m_C 3n1q_C 3n1m_C 3n1g_C 3n1p_C
Probab=99.64 E-value=1e-15 Score=136.14 Aligned_cols=98 Identities=18% Similarity=0.304 Sum_probs=82.0
Q ss_pred CCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCC---cceEEEEecCCcCeEEecCCCCCceEEEE
Q psy574 639 CEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNN---SALINMTVSASTPTLLLTNLSAGIRYSVS 715 (977)
Q Consensus 639 ~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~---~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~ 715 (977)
.+|+++|.++.+...++++|.|+|++|+.+..||.|++|+|.|+..+. .......+.++.++++|.+|+|++.|.|+
T Consensus 2 ~~P~~~P~~~~~~~~s~tsi~v~W~~p~~~~~ng~i~gY~v~y~~~~~~~~~~~~~~~v~~~~~~~~l~~L~p~t~Y~v~ 81 (102)
T 3n1f_C 2 STPITGPHIAYTEAVSDTQIMLKWTYIPSSNNNTPIQGFYIYYRPTDSDNDSDYKRDVVEGSKQWHMIGHLQPETSYDIK 81 (102)
T ss_dssp --CCSCCEEEEEEECSSSCEEEEEECCC-----CCCCEEEEEEEETTCCCGGGCEEEEEETTCSEEEECSCCTTCEEEEE
T ss_pred CCCCCCCceeEEEEcCCCEEEEEeECCChhhcCCccceEEEEEEECCCCCCCceEEEEEcCCceEEECCCCCCCCEEEEE
Confidence 368889999999999999999999999766799999999999998652 24556677778889999999999999999
Q ss_pred EEEEcCCCcCCCCCceEEeec
Q psy574 716 LAATNRAGTGPYSRPALLSLT 736 (977)
Q Consensus 716 V~A~~~~G~g~~S~~~~~~t~ 736 (977)
|+|+|.+|.|++|.++.++|.
T Consensus 82 V~A~n~~G~G~~S~~~~~~T~ 102 (102)
T 3n1f_C 82 MQCFNEGGESEFSNVMICETK 102 (102)
T ss_dssp EEEEETTEECCCCCCEEEECC
T ss_pred EEEECCCcCCCCCCCEEeecC
Confidence 999999999999999998873
No 375
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*
Probab=99.64 E-value=9.8e-15 Score=146.73 Aligned_cols=161 Identities=16% Similarity=0.203 Sum_probs=120.7
Q ss_pred eEEeCCCeEEEEEEecccCce--EEEEEECCeeCCCCceEE-eccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy574 109 TTVSASSIIVFECSVGGDAVL--TVHWKRLGSAMPEDRMSV-LPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTV 185 (977)
Q Consensus 109 ~~v~~G~~v~l~C~v~g~p~~--~i~W~k~~~~l~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V 185 (977)
+.+..|++++|.|.+ +.|.| .|+|++.+..+ ++... .....|.|.+++.+|+|.|.|.|.|..+...+.+.|+|
T Consensus 17 v~v~~G~sv~L~C~a-~~p~P~~~i~W~~~~~~l--~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~~~~~ltV 93 (210)
T 1gsm_A 17 VAVALGASRQLTCRL-ACADRGASVQWRGLDTSL--GAVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLV 93 (210)
T ss_dssp EEEETTCCEEEEEEE-CCSSTTCEEEEESSTTTT--CCEEEESSEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred eEEeCCCCEEEEEEC-CCCCCCcceEEeeccccc--CcEEecCCccEEEECccCcccCceEEEEEEeCCCceEEEEEEEE
Confidence 588999999999999 88877 99999976555 33332 24578999999999999999999999998889999999
Q ss_pred eeCCeEEe-cCCCcEEeeCCeEEEEEEEecC-CC----CeEEEEEcCeeeeecCC--------------CccccEEEEEc
Q psy574 186 QMAPIVRE-RPSDLRLEVGRDAVFLCGIEGS-PP----PSTFWMLEGNRSLIYPG--------------DRVDNIQAEIT 245 (977)
Q Consensus 186 ~~~p~~~~-~p~~~~v~~G~~v~L~C~~~g~-p~----~~i~W~~~g~~~~~~~~--------------~~~~~~~~~~~ 245 (977)
..+|.... .+. ...+|+.+ |.|.+.+. |. ++|.|+|++.++..... .....|++.
T Consensus 94 ~~~P~~~~i~~~--~~~~g~~~-l~C~a~g~~P~~~~~lti~Wlk~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~vt-- 168 (210)
T 1gsm_A 94 YAFPNQLTVSPA--ALVPGDPE-VACTAHKVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDEDVLFRVT-- 168 (210)
T ss_dssp EBCCSEEEEESS--SBCTTCCE-EEEEEEEEBCCCTTTEEEEEEETTEECTTCEECCCEEEECTTCCSSCCCCCEEEE--
T ss_pred EecCCCcEEccc--eEEeCCce-EEEEeCCCCCCCCCCcEEEEEECCEEcccccccccceecccccccCCcceEEEEE--
Confidence 99886554 332 66678888 99999885 64 48999999988631100 001122222
Q ss_pred cCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEE
Q psy574 246 SDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARAS 282 (977)
Q Consensus 246 ~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~ 282 (977)
++|.+.....+|.+.|+ |.|.+..........
T Consensus 169 ----s~~~~~~~~~D~~~~~t-C~a~~~L~~~~~~~~ 200 (210)
T 1gsm_A 169 ----ERWRLPPLGTPVPPALY-CQATMRLPGLELSHR 200 (210)
T ss_dssp ----EEEECCCCCSSCCSEEE-EEEEEEETTEEEEEE
T ss_pred ----EEEeecCCcccCCceEE-EEEEeeCCCCccccc
Confidence 25666677777789999 999998765544443
No 376
>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...
Probab=99.64 E-value=9.1e-16 Score=157.16 Aligned_cols=167 Identities=19% Similarity=0.246 Sum_probs=119.4
Q ss_pred CCCceEEeCCCeEEEEEEecccC--ceEEEEEECC--eeC-----------------CCCceEEec-----cceEEEccC
Q psy574 105 GPKDTTVSASSIIVFECSVGGDA--VLTVHWKRLG--SAM-----------------PEDRMSVLP-----SRSLQLSDV 158 (977)
Q Consensus 105 ~p~~~~v~~G~~v~l~C~v~g~p--~~~i~W~k~~--~~l-----------------~~~~~~~~~-----~~~L~I~~v 158 (977)
.|....+.+|++++|.|.+.+.+ .+.+.|+|++ ... ..+|+.+.. +.+|.|.++
T Consensus 6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v 85 (210)
T 3d9a_H 6 ESGPSLVKPSQTLSLTCSVTGDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSV 85 (210)
T ss_dssp EESCSEECTTSCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGGGTEEEEEECSC
T ss_pred cCCCEEecCCCcEEEEEEEecccCCCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCCCCEEEEEECCC
Confidence 35667899999999999998765 4789999863 211 135666542 238999999
Q ss_pred ccCCCeEEEEEEEeCCeeEEEEEEEEEe----eCCeEEecCCCcEEeeCCeEEEEEEEecC-CCC-eEEEEEcCeeeeec
Q psy574 159 RLEDAGEYVCEAENAVGKISASATLTVQ----MAPIVRERPSDLRLEVGRDAVFLCGIEGS-PPP-STFWMLEGNRSLIY 232 (977)
Q Consensus 159 ~~~D~G~Y~C~a~n~~g~~~~~~~L~V~----~~p~~~~~p~~~~v~~G~~v~L~C~~~g~-p~~-~i~W~~~g~~~~~~ 232 (977)
+.+|+|.|+|.+.|.. .....+.|.|. .+|.+...+....+.+|+.++|.|.+.+. |.+ .+.|++++..+...
T Consensus 86 ~~~D~G~Y~C~~~~~~-~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~ 164 (210)
T 3d9a_H 86 TTEDTATYYCANWDGD-YWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVH 164 (210)
T ss_dssp CGGGCEEEEEEETTSS-CBCCCEEEEECCCCCBCCEEEEECCTTSCCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCTTEE
T ss_pred CcccCEEEEEEEecCc-ccccceEEEeccCCCCCCEEEEecCCcccccCCcEEEEEEEeeEecCCcEEEEeeCCcccceE
Confidence 9999999999999863 22233567776 35666655544567899999999999986 888 99999998753211
Q ss_pred CCCc---cccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEE
Q psy574 233 PGDR---VDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLAR 280 (977)
Q Consensus 233 ~~~~---~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~ 280 (977)
.... .+.+.. .+.|.|..+..+| |.|+ |.|.|..|.....
T Consensus 165 ~~~~~~~~~~~~~------~s~L~i~~~~~~~-g~Y~-C~a~n~~~~~~~~ 207 (210)
T 3d9a_H 165 TFPAVLQSDLYTL------SSSVTVPSSTWPS-ETVT-CNVAHPASSTKVD 207 (210)
T ss_dssp ECCCEEETTEEEE------EEEEEEEGGGTTT-SCCE-EEEEEGGGTEEEE
T ss_pred EcCCccCCCcEEE------EEEEEEcHHHcCC-CcEE-EEEEeCCCCcccc
Confidence 0000 012222 2379999998877 9999 9999998876443
No 377
>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB, immune system/cytokine complex; 1.90A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A* 1f42_A* 1f45_A* 3hmx_A* 3qwr_A*
Probab=99.64 E-value=1e-14 Score=157.77 Aligned_cols=116 Identities=15% Similarity=0.090 Sum_probs=77.6
Q ss_pred cEEEEEEEEeecceeCCCCCceEEeccCCCCCCCCceeEEEEe-cCcEEEEEeeCCCCCC-CCe-eeeEEEEEEEecCCc
Q psy574 611 SRYEFFLVPFFGSVDGKPSNLRAVRTLECEPSGVPQLTDPVLL-NATSVLLKWKPPPVGT-HNG-VIRTYQIIVGGGNNS 687 (977)
Q Consensus 611 t~Y~~~V~a~n~~g~g~~s~~~~~~T~~~~P~~~P~~v~~~~~-~~~sv~v~W~~p~~~~-~ng-~i~~Y~v~~~~~~~~ 687 (977)
..|.|+|.|.|..|.. +....|.....+.+.||.+|++... ....+.|+|++|.... +.+ ..+.|+|+|+..+..
T Consensus 184 ~~y~~~V~A~n~lg~~--s~~~~f~~~~iVkPdPP~~l~~~~~~~~~~l~vsW~~P~~~~~p~~~~~L~Y~vryr~~~~~ 261 (306)
T 3d85_D 184 LPIEVMVDAVHKLKYE--QYTSSFFIRDIIKPDPPKNLQLKPLKNSRQVEVSWEYPDTWSTPHSYFSLTFCVQVQGKSKR 261 (306)
T ss_dssp SCEEEEEEEEETTEEE--EEEEEECHHHHBCCCCCEEEEEEEC----CEEEEEECCTTSCSCTTTSCEEEEEEEECC---
T ss_pred EEEEEEEEEEccCCcc--ccceEEEehhcEecCCCceEEEEEecCCCcEEEEEcCCCCCcCCCceeeEEEEEEEEECCCC
Confidence 4799999999988754 2234454433343459999999874 3378999999995222 122 558999999986632
Q ss_pred ceEEEEecCCcCeEEecCCCCCceEEEEEEEEcCCCcCCCCCceE
Q psy574 688 ALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPAL 732 (977)
Q Consensus 688 ~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~~G~g~~S~~~~ 732 (977)
.+... .....+++.| .+++.|.|+|||.+..|.|.||+-..
T Consensus 262 ~~~~~-~~~~~ts~~l---~~~~~Y~vqVRa~~~~~~G~WSeWS~ 302 (306)
T 3d85_D 262 EKKDR-VFTDKTSATV---ICRKNASISVRAQDRYYSSSWSEWAS 302 (306)
T ss_dssp ---CE-EEESSSEEEE---CCCSSCEEEEEEEESSSCCCCCCCEE
T ss_pred ccEEE-eeccccEEEE---eCCCeEEEEEEeccCCCCCCCCCCCC
Confidence 22222 3345577776 46999999999999999999997654
No 378
>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Probab=99.64 E-value=3.8e-16 Score=160.21 Aligned_cols=164 Identities=16% Similarity=0.220 Sum_probs=121.6
Q ss_pred CCceEEeCCCeEEEEEEecccCceEEEEEECC--eeC-------------CCCceEEe---ccceEEEccCccCCCeEEE
Q psy574 106 PKDTTVSASSIIVFECSVGGDAVLTVHWKRLG--SAM-------------PEDRMSVL---PSRSLQLSDVRLEDAGEYV 167 (977)
Q Consensus 106 p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~--~~l-------------~~~~~~~~---~~~~L~I~~v~~~D~G~Y~ 167 (977)
|....+.+|++++|.|.+.+.|.+.|.|+|++ ..+ ..+++.+. ...+|.|.+++.+|+|.|+
T Consensus 6 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~ 85 (212)
T 1nfd_E 6 PSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAYY 85 (212)
T ss_dssp CSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSEEE
T ss_pred CCeEEEeCCCcEEEEEecCCCCCCeEEEEEECCCCCcEEEEEeccccCCCccccEEEEeeCCEEEEEECcCCcccCEEEE
Confidence 77889999999999999988888889999953 222 13455554 2348999999999999999
Q ss_pred EEEEeC-Cee--EEEEEEEEEe----eCCeEEecCCCcEEeeCCeEEEEEEEecC-CC-CeEEEEEcCeeeeecCCC---
Q psy574 168 CEAENA-VGK--ISASATLTVQ----MAPIVRERPSDLRLEVGRDAVFLCGIEGS-PP-PSTFWMLEGNRSLIYPGD--- 235 (977)
Q Consensus 168 C~a~n~-~g~--~~~~~~L~V~----~~p~~~~~p~~~~v~~G~~v~L~C~~~g~-p~-~~i~W~~~g~~~~~~~~~--- 235 (977)
|.|.|. .+. ....+.|.|. .+|.+...+....+.+|+.++|.|.+.+. |. +.+.|+++|..+......
T Consensus 86 C~~~n~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~ 165 (212)
T 1nfd_E 86 CLSSYGDNNDLVFGSGTQLTVLRGPKSSPKVTVFPPSPEELRTNKATLVCLVNDFYPGSATVTWKANGATINDGVKTTKP 165 (212)
T ss_dssp EEEEETTTTEEEECCCEEEEEECCCCBCCEEECCCCCHHHHHTTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBCCCC
T ss_pred EEEEcccCcccccCCceEEEEccCCCCCCEEEeeCCchHhccCCceEEEEEEEeeECCccEEEEEECCeEcCCCeecCCc
Confidence 999973 222 2334567774 56777766655566789999999999887 54 799999999876422100
Q ss_pred ---ccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCce
Q psy574 236 ---RVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSD 277 (977)
Q Consensus 236 ---~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~ 277 (977)
..+ +... +.|.|.++..+|+|.|+ |.|.|..+..
T Consensus 166 ~~~~~~-~~~~------s~L~i~~~~~~d~G~Y~-C~a~n~~~~~ 202 (212)
T 1nfd_E 166 SKQGQN-YMTS------SYLSLTADQWKSHNRVS-CQVTHEGETV 202 (212)
T ss_dssp BCSSSC-EEEE------EBCCEEHHHHHTCSCEE-EEEECTTTTC
T ss_pred eecCCC-ceEE------EEEEEchhhcCCCCeEE-EEEEeCCceE
Confidence 011 2222 37999999999999999 9999987753
No 379
>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...
Probab=99.64 E-value=7.8e-16 Score=159.21 Aligned_cols=170 Identities=16% Similarity=0.244 Sum_probs=120.5
Q ss_pred CCceEEeCCCeEEEEEEecccC--ceEEEEEECC--ee---C-----------------CCCceEEec-----cceEEEc
Q psy574 106 PKDTTVSASSIIVFECSVGGDA--VLTVHWKRLG--SA---M-----------------PEDRMSVLP-----SRSLQLS 156 (977)
Q Consensus 106 p~~~~v~~G~~v~l~C~v~g~p--~~~i~W~k~~--~~---l-----------------~~~~~~~~~-----~~~L~I~ 156 (977)
|....+.+|++++|.|.+.+.+ .+.+.|+|+. .. + ..+|+.+.. +.+|.|.
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~ 86 (222)
T 1q9r_B 7 SGGGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMN 86 (222)
T ss_dssp ECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEEC
T ss_pred CCceeEcCCCEEEEEEEecCccCCCCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECCCCeEEEEEC
Confidence 4566889999999999998765 6789999953 11 0 124555543 3489999
Q ss_pred cCccCCCeEEEEEEEeCCe-----eEEEEEEEEEee----CCeEEecCCCcEEeeCCeEEEEEEEecC-CCC-eEEEEEc
Q psy574 157 DVRLEDAGEYVCEAENAVG-----KISASATLTVQM----APIVRERPSDLRLEVGRDAVFLCGIEGS-PPP-STFWMLE 225 (977)
Q Consensus 157 ~v~~~D~G~Y~C~a~n~~g-----~~~~~~~L~V~~----~p~~~~~p~~~~v~~G~~v~L~C~~~g~-p~~-~i~W~~~ 225 (977)
+++.+|+|.|+|.+.+..+ .....+.|.|.. +|.+...+....+.+|+.++|.|.+.|. |.+ .+.|+++
T Consensus 87 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~ 166 (222)
T 1q9r_B 87 TLRAEDSATYYCARDHDGYYERFSYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSG 166 (222)
T ss_dssp SCCGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECSSCCBCCEEEEECCCSCCCCSSEEEEEEEEEEEBSSCCEEEEGGG
T ss_pred cCCcccCeEEEEEEeccCCcccceEeCCceEEEeccCCCCCCeEEEccccccccCCCcEEEEEEEccEECCCCEEEEecC
Confidence 9999999999999998654 222345777763 4666555444456789999999999985 888 9999999
Q ss_pred CeeeeecCCC---ccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEE
Q psy574 226 GNRSLIYPGD---RVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASL 283 (977)
Q Consensus 226 g~~~~~~~~~---~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l 283 (977)
|..+...... ..+.+.+ .+.|.|.+++..| |.|+ |.|.|..|.......|
T Consensus 167 g~~~~~~~~~~~~~~~~~~~------~s~L~i~~~~~~d-g~y~-C~a~n~~~~~~~~~~i 219 (222)
T 1q9r_B 167 SLSSGVHTFPAVLQSDLYTL------SSSVTVPSSTWPS-ETVT-CNVAHPASSTKVDKKI 219 (222)
T ss_dssp TBCTTEEEEEEEEETTEEEE------EEEEEEETTTTTT-SCCE-EEEEEGGGTEEEEEEC
T ss_pred CeEcceEeccccccCCcEEE------EEEEEECchhcCC-CeEE-EEEEccCCCCcEEEec
Confidence 8754210000 0111211 1379999999899 9999 9999998876554433
No 380
>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*
Probab=99.64 E-value=3.1e-15 Score=156.93 Aligned_cols=172 Identities=15% Similarity=0.217 Sum_probs=123.4
Q ss_pred eEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCe--eC-------------CCCceEEec---cceEEEccCccCC
Q psy574 101 YIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGS--AM-------------PEDRMSVLP---SRSLQLSDVRLED 162 (977)
Q Consensus 101 ~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~--~l-------------~~~~~~~~~---~~~L~I~~v~~~D 162 (977)
.+...|....+.+|++++|.|.+.+.|.+.+.|+|+.. .. ..+|+.+.. ..+|.|.+++.+|
T Consensus 3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D 82 (242)
T 2znx_A 3 VLTQSPATLSVTPGNSVSLSCRASQSIGNNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETED 82 (242)
T ss_dssp CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred cEEEcCCeEEEcCCCcEEEEEEeCCCCCceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEecCCCEEEEEECCCChHH
Confidence 35566778899999999999999988889999999631 11 134555432 3479999999999
Q ss_pred CeEEEEEEEeCCee-EEEEEEEEEeeCCe-------------EEecCCCcEEeeCCeEEEEEEEecCC--CCeEEEEEcC
Q psy574 163 AGEYVCEAENAVGK-ISASATLTVQMAPI-------------VRERPSDLRLEVGRDAVFLCGIEGSP--PPSTFWMLEG 226 (977)
Q Consensus 163 ~G~Y~C~a~n~~g~-~~~~~~L~V~~~p~-------------~~~~p~~~~v~~G~~v~L~C~~~g~p--~~~i~W~~~g 226 (977)
+|.|+|.+.|..+. ....+.|.|..+|. ....+....+.+|++++|.|.+.+.+ .+.+.|+|++
T Consensus 83 ~G~Y~C~~~n~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k~~ 162 (242)
T 2znx_A 83 FGMYFCQQSNSXPYTFGGGTKLEITGGGGSGGGGSGGGGSDIQLQESGPSLVKPSQTLSLTCSVTGDSITSDYXSXIRKF 162 (242)
T ss_dssp CEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEEECCSEECTTSCEEEEEEEESSCGGGSCEEEEEEC
T ss_pred CEEEEEeEecCCceEECCCEEEEEcCCCCCCcccccccccceeeecCCcceecCCCeEEEEEEEEccccCCcceeeEeeC
Confidence 99999999987543 23456788876552 33444456799999999999999876 4789999963
Q ss_pred --eeee--ec---CC------CccccEEEEEcc-CCceEEEEeecccCCCCeEEEEEEEcC
Q psy574 227 --NRSL--IY---PG------DRVDNIQAEITS-DGMNLLKIQNVSRTAAPLIILCLGVNA 273 (977)
Q Consensus 227 --~~~~--~~---~~------~~~~~~~~~~~~-~g~s~L~I~~v~~~d~G~Y~~C~a~n~ 273 (977)
..+. .. .+ ....++.+.... .....|.|.+++.+|+|.|. |.|.|.
T Consensus 163 ~~~~~~~l~~~~~~g~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~-C~a~~~ 222 (242)
T 2znx_A 163 PGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTEDTATYY-CANXDG 222 (242)
T ss_dssp TTSCEEEEEEECTTSCEEECGGGTTCEEEEEETTTTEEEEEECSCCGGGCEEEE-EEETTS
T ss_pred CCCCcEEEEEEecCCccccCccccCcEEEEecCCCCEEEEEECCCCcCcCEEEE-EeccCC
Confidence 2221 10 00 124567766431 23469999999999999999 999874
No 381
>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*
Probab=99.64 E-value=1.6e-15 Score=156.52 Aligned_cols=169 Identities=20% Similarity=0.298 Sum_probs=121.4
Q ss_pred CCCceEEeCCCeEEEEEEecccC--ceEEEEEECC--ee---C-----------------CCCceEEec-----cceEEE
Q psy574 105 GPKDTTVSASSIIVFECSVGGDA--VLTVHWKRLG--SA---M-----------------PEDRMSVLP-----SRSLQL 155 (977)
Q Consensus 105 ~p~~~~v~~G~~v~l~C~v~g~p--~~~i~W~k~~--~~---l-----------------~~~~~~~~~-----~~~L~I 155 (977)
.|....+.+|++++|.|.+.+.+ .+.+.|+|++ .. + ..+|+.+.. +.+|.|
T Consensus 6 ~p~~~~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I 85 (220)
T 1pz5_B 6 ESGGGLVQPGGSMKLSCVASGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSSVYLQM 85 (220)
T ss_dssp EECCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEGGGTEEEEEE
T ss_pred ccCCEEEcCCCeEEEEEEEcCCccCCccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeCCCCeEEEEE
Confidence 35667899999999999998765 6899999963 11 1 024665542 238999
Q ss_pred ccCccCCCeEEEEEEEeCCee---EEEEEEEEEe----eCCeEEecCCCcEEeeCCeEEEEEEEecC-CCC-eEEEEEcC
Q psy574 156 SDVRLEDAGEYVCEAENAVGK---ISASATLTVQ----MAPIVRERPSDLRLEVGRDAVFLCGIEGS-PPP-STFWMLEG 226 (977)
Q Consensus 156 ~~v~~~D~G~Y~C~a~n~~g~---~~~~~~L~V~----~~p~~~~~p~~~~v~~G~~v~L~C~~~g~-p~~-~i~W~~~g 226 (977)
.+++.+|+|.|+|.+.+..+. ....+.|.|. .+|.+...+....+.+|+.++|.|.+.+. |.+ .+.|++++
T Consensus 86 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~ 165 (220)
T 1pz5_B 86 NNLRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSATTTAPSVYPLVPGCSDTSGSSVTLGCLVKGYFPEPVTVKWNYGA 165 (220)
T ss_dssp CSCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCSCCSCSSSEEEEEEEEEEBSSCCEEEEGGGT
T ss_pred ccCCHHHCEEEEEEEecCCcccceECCCEEEEEccCCCCCCeEEEcccccccCCCCcEEEEEEEEEEeCCCeEEEEecCC
Confidence 999999999999999987532 1245677776 35666655544456789999999999987 888 99999988
Q ss_pred eeee--ecCCC-ccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEE
Q psy574 227 NRSL--IYPGD-RVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARA 281 (977)
Q Consensus 227 ~~~~--~~~~~-~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~ 281 (977)
.... ..+.. ..+.+... +.|.|.++..+| |.|+ |.|.|..|.....+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~------s~L~i~~~~~~~-g~Y~-C~a~n~~~~~~~~~ 215 (220)
T 1pz5_B 166 LSSGVRTVSSVLQSGFYSLS------SLVTVPSSTWPS-QTVI-CNVAHPASKVDLIK 215 (220)
T ss_dssp CCTTEEECCCEEETTEEEEE------EEEEECGGGTTT-SCCE-EEEEEGGGTEEEEE
T ss_pred cccceEEcCCcccCCeEEEE------EEEEEcchhcCC-ceEE-EEEEECCccEeeee
Confidence 6410 00100 01233322 389999998866 9999 99999999765543
No 382
>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B
Probab=99.64 E-value=4e-15 Score=153.73 Aligned_cols=162 Identities=19% Similarity=0.350 Sum_probs=116.3
Q ss_pred ecccceEEeCCCcEEEEEECCCCC--CCCeEEEEeC--CEE---e--------------ecCCCceEEEecCc-----EE
Q psy574 10 VQPKSQRVAAGDTALLECGPPRGH--PEPTLVWKKN--GHP---I--------------DFENSKRLRLVDGT-----NL 63 (977)
Q Consensus 10 ~~p~~~~v~~G~~v~L~C~~~~g~--P~~~v~W~k~--g~~---l--------------~~~~~~r~~~~~~g-----~L 63 (977)
.+|..+.+.+|++|+|.|.+ .+. +.+.|.|+|. +.. + .....+|+.+..++ +|
T Consensus 5 ~~p~~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL 83 (221)
T 3m8o_H 5 VESGGGLVQPGGSLKLSCAA-SGFTLSGSNVHWVRQASGKGLEWVGRIKRNAESDATAYAASMRGRLTISRDDSKNTAFL 83 (221)
T ss_dssp EEESCEEECTTCCEEEEEEE-ESSCGGGSEEEEEEECTTSCEEEEEEECCGGGTTCEEECGGGTTSEEEEEEGGGTEEEE
T ss_pred EccCCEEEcCCCCEEEEEEc-ccccccccEEEEEEECCCCCcEEEEEEcccccCcccccCccccccEEEEecCCCCEEEE
Confidence 45777999999999999998 443 3678999973 211 1 01123677776433 59
Q ss_pred EEcCCCCCCCeEEEEEEEecCc-eeeeEeEEEEEE----cCCeEE-eCCCceEEeCCCeEEEEEEecc-cCc--eEEEEE
Q psy574 64 AIQDSRKTDDGRYQCVVKNVAG-TRESTDAVLRVL----VKPYII-RGPKDTTVSASSIIVFECSVGG-DAV--LTVHWK 134 (977)
Q Consensus 64 ~I~~v~~~D~G~Y~C~a~n~~g-~~~s~~~~l~V~----~~P~~~-~~p~~~~v~~G~~v~l~C~v~g-~p~--~~i~W~ 134 (977)
.|.+++.+|+|.|.|.+.+... ......+.|.|. .+|.+. ..+... .+|+.++|.|.+.| .|. +.+.|+
T Consensus 84 ~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~--~~g~~v~L~C~~~~~~P~~~~~v~W~ 161 (221)
T 3m8o_H 84 QMNSLKSDDTAMYYCVIRGDVYNRQWGQGTLVTVSSASPTSPKVFPLSLCST--QPDGNVVIACLVQGFFPQEPLSVTWS 161 (221)
T ss_dssp EECSCCGGGCEEEEEEEESCTTCCCBBCCEEEEECSCCCBCCEEEEEECCSC--CCTTEEEEEEEEEEEBSSCSEEEEES
T ss_pred EECCCCHHHCEEEEEEEECCChhheECCCEEEEEecCCCCCCeEEEecCccc--ccCCCEEEEEEEEeeECCCCEEEEEE
Confidence 9999999999999999988641 222344567775 345554 334333 78999999999987 675 589999
Q ss_pred ECCeeCC-----------CCceEEeccceEEEccCccCCCeEEEEEEEeCCee
Q psy574 135 RLGSAMP-----------EDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGK 176 (977)
Q Consensus 135 k~~~~l~-----------~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~ 176 (977)
+++..+. .+.+. ....|.|..+..+|.|.|+|.|.|..+.
T Consensus 162 ~~g~~~~~~~~~~~~~~~~~~~~--~~s~L~i~~~~~~d~g~ytC~v~~~~~~ 212 (221)
T 3m8o_H 162 ESGQGVTARNFPPSQDASGDLYT--TSSQLTLPATQCLAGKSVTCHVKHYTNP 212 (221)
T ss_dssp CCSTTCEEEECCCEECSSSSCEE--EEEEEEEEGGGSCTTCEEEEEEEETTSC
T ss_pred ECCEECceEEcCceeeCCCCcEE--EEEEEEECHHHcCCCCeEEEEEEECCCC
Confidence 9987762 11121 2246999999999999999999998754
No 383
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A
Probab=99.63 E-value=3.2e-15 Score=148.60 Aligned_cols=153 Identities=12% Similarity=0.200 Sum_probs=117.7
Q ss_pred CCceEEeCCCeEEEEEEe--cccCceEEEEEE--CCeeC-----------CCCceEEeccceEEEccCccCCCeEEEEEE
Q psy574 106 PKDTTVSASSIIVFECSV--GGDAVLTVHWKR--LGSAM-----------PEDRMSVLPSRSLQLSDVRLEDAGEYVCEA 170 (977)
Q Consensus 106 p~~~~v~~G~~v~l~C~v--~g~p~~~i~W~k--~~~~l-----------~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a 170 (977)
+..+...+|++++|.|.. .+.+.+.|.|+| ++..+ ..+|+.+..+++|.|.+++.+|+|.|+|.|
T Consensus 6 ~~~v~g~~G~sv~L~~~~~~~~~~~~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~~~~ngsL~I~~v~~~DsG~Y~c~~ 85 (182)
T 1hnf_A 6 ALETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQDIYKVSI 85 (182)
T ss_dssp CEEEEEETTSCEEECCTTCCCCSSEEEEEEEEGGGCCEEEEECGGGCEEESCTTEEECTTSCEEECSCCGGGCEEEEEEE
T ss_pred ccEEEEecCCCEEEeCCcccccCcCCEEEEEECCCCcEEEEEeCccCCCCCCCeEEECCCCCEEECCCChhhCEEEEEEE
Confidence 345577899999999954 235678999999 87765 356888888899999999999999999999
Q ss_pred EeCCeeE--EEEEEEEEeeC---CeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCccccEEEEEc
Q psy574 171 ENAVGKI--SASATLTVQMA---PIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEIT 245 (977)
Q Consensus 171 ~n~~g~~--~~~~~L~V~~~---p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~ 245 (977)
.|..|.. ...+.|.|..+ |.+.. .+..++|.|.+.+.|.+.+.|+++|..+. . .
T Consensus 86 ~n~~g~~~~~~~~~L~V~~~~~~P~i~~--------~~~~v~L~C~~~~~p~~~~~W~~~g~~l~-----~-------~- 144 (182)
T 1hnf_A 86 YDTKGKNVLEKIFDLKIQERVSKPKISW--------TCINTTLTCEVMNGTDPELNLYQDGKHLK-----L-------S- 144 (182)
T ss_dssp EETTSCEEEEEEEEEEEECCCCCCEEEE--------ETTTTEEEEECSSCSSCEEEEEESSCEEE-----E-------E-
T ss_pred EeCCCceeEEEEEEEEEcCcCCCCEEEE--------ccCcEEEEeEccCCCCCEEEEEECCEECC-----C-------C-
Confidence 9988764 45677888753 33332 34479999999999999999999997651 0 0
Q ss_pred cCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEE
Q psy574 246 SDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLT 284 (977)
Q Consensus 246 ~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~ 284 (977)
.. .|.+.. ...|+|.|+ |.|.|..+.......+.
T Consensus 145 -~~--~i~~~~-~~~d~G~Y~-C~a~N~~~~~~s~~~~~ 178 (182)
T 1hnf_A 145 -QR--VITHKW-TTSLSAKFK-CTAGNKVSKESSVEPVS 178 (182)
T ss_dssp -SS--CEEEEC-CSCEEEEEE-EEEECSSCEEEEEEEEE
T ss_pred -Cc--EEEEec-ccCCCcEEE-EEEEeCCCCcEEcceec
Confidence 11 344433 478999999 99999999887776653
No 384
>3nl4_H Antigen binding fragment,immunoglobulin IGG - HEA; FAB, rabbit, conformation-specific, amyloid, immune system; 1.54A {Oryctolagus cuniculus} PDB: 4hbc_H
Probab=99.63 E-value=5.1e-16 Score=159.71 Aligned_cols=174 Identities=17% Similarity=0.201 Sum_probs=116.2
Q ss_pred eecccceEEeCCCcEEEEEECCCC--CCCCeEEEEeCC--E---Ee-----------ecCCCceEEEecCc---EEEEcC
Q psy574 9 RVQPKSQRVAAGDTALLECGPPRG--HPEPTLVWKKNG--H---PI-----------DFENSKRLRLVDGT---NLAIQD 67 (977)
Q Consensus 9 ~~~p~~~~v~~G~~v~L~C~~~~g--~P~~~v~W~k~g--~---~l-----------~~~~~~r~~~~~~g---~L~I~~ 67 (977)
..+|.++.+.+|++|+|.|.+ .+ .+.+.|.|+|.. . .+ .....+|+.+..++ +|.|.+
T Consensus 3 l~~p~~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~ 81 (215)
T 3nl4_H 3 VEESGGRLVTPGTPLTLACTV-SGFSLNTYSMFWVRQAPGKGLQWIGIISNFGVIYYATWAKGRFTISKTSTTVDLKITS 81 (215)
T ss_dssp EEEECCCEECTTCCEEEEEEE-ESSCTTTCCEEEEEECTTSCEEEEEEECTTCCEEECGGGTTTEEEEECSSEEEEEESS
T ss_pred eEcCCCEEEcCCCcEEEEEEe-cCcccCCCeEEEEEECCCCCeEEEEEEecCCccccCCcccCCEEEEeeCCEEEEEECC
Confidence 356778999999999999998 43 346789999832 1 11 01124566665432 599999
Q ss_pred CCCCCCeEEEEEEEecCce---eeeEeEEEEEE----cCCeEEeCCCceEEeCCCeEEEEEEecccC--ceEEEEEECCe
Q psy574 68 SRKTDDGRYQCVVKNVAGT---RESTDAVLRVL----VKPYIIRGPKDTTVSASSIIVFECSVGGDA--VLTVHWKRLGS 138 (977)
Q Consensus 68 v~~~D~G~Y~C~a~n~~g~---~~s~~~~l~V~----~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p--~~~i~W~k~~~ 138 (977)
++.+|+|.|.|.+.+..+. .....+.|.|. .+|.+...+....+.+|+.++|.|.+.|.+ ...+.|+|++.
T Consensus 82 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~l~C~~~~~~p~~~~v~W~~~g~ 161 (215)
T 3nl4_H 82 PTTEDTATYFCVRKYGSEWGGDLWGPGTLVTVSSGQPKAPSVFPLAPCCGDTPSSTVTLGCLVKGYLPEPVTVTWNSGTL 161 (215)
T ss_dssp CCGGGCEEEEEEEECSSSSCEEEECCCEEEEECSSCCBCCEEEEECCCTTCCC--CEEEEEEEEEEBSSCCEEEEGGGTB
T ss_pred CCcccCEEEEEEEecCCCccceEEcCCEEEEEeCCCcCCCEEEEecCCccccCCCcEEEEEEEeeeeCCCeEEEEeeCCE
Confidence 9999999999999987542 23344578886 566666444444667899999999997753 34688999987
Q ss_pred eCCC--CceEEeccceEEE---ccCccCCCeEEEEEEEeCCeeEEEEEEEE
Q psy574 139 AMPE--DRMSVLPSRSLQL---SDVRLEDAGEYVCEAENAVGKISASATLT 184 (977)
Q Consensus 139 ~l~~--~~~~~~~~~~L~I---~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~ 184 (977)
.+.. .......++.+.+ ..+...| |.|+|.|.|..+.......|.
T Consensus 162 ~~~~~~~~~~~~~~g~~~~~s~l~v~~~d-g~ytC~v~~~~~~~~~~~~l~ 211 (215)
T 3nl4_H 162 TNGVRTFPSVRQSSGLYSLSSVVSVTSSS-QPVTCNVAHPATNTKVDKTVA 211 (215)
T ss_dssp CTTEEECCCEECTTSCEEEEEEEEECC----CCEEEEEEGGGTEEEEEECC
T ss_pred ECCeEecCceECCCCCEEEEEEEEEeccC-CEEEEEEEeCCCCcceEEecC
Confidence 5532 1112234555555 5566778 999999999987665555443
No 385
>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}
Probab=99.63 E-value=5e-16 Score=160.16 Aligned_cols=174 Identities=15% Similarity=0.188 Sum_probs=119.1
Q ss_pred cCCeEEeCCCceE--EeCCCeEEEEEEeccc---C-ceEEEEEECCeeCCCCce---------EEeccceEEEccCccCC
Q psy574 98 VKPYIIRGPKDTT--VSASSIIVFECSVGGD---A-VLTVHWKRLGSAMPEDRM---------SVLPSRSLQLSDVRLED 162 (977)
Q Consensus 98 ~~P~~~~~p~~~~--v~~G~~v~l~C~v~g~---p-~~~i~W~k~~~~l~~~~~---------~~~~~~~L~I~~v~~~D 162 (977)
.+|.+...|.... +.+|++++|.|.+.|. | .+.|.|+|++..+..... .+.....|.|.+++.+|
T Consensus 8 ~~p~v~~~pp~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D 87 (218)
T 2rgs_A 8 GGPSVFIFPPNIKDVLMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTIRVVSTLPIQHQDWMS 87 (218)
T ss_dssp -CCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTSCCEEEEEEETTEEECCCEEEEEEETTTTEEEEEEEEECCHHHHHT
T ss_pred CCCEEEEECcCHHHhhccCCCeeEEEEEcCCccCCCceEEEEEECCccccCcccccccccCCCeEEEEEEEEEcHHHcCC
Confidence 3455544444443 7899999999999876 3 389999999987654321 11123579999999999
Q ss_pred CeEEEEEEEeCCeeE--EEEEEE--EEeeCCeEEecCCCcEEeeCCeEEEEEEEec-CCCC-eEEEEEcCeeeeecCCCc
Q psy574 163 AGEYVCEAENAVGKI--SASATL--TVQMAPIVRERPSDLRLEVGRDAVFLCGIEG-SPPP-STFWMLEGNRSLIYPGDR 236 (977)
Q Consensus 163 ~G~Y~C~a~n~~g~~--~~~~~L--~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g-~p~~-~i~W~~~g~~~~~~~~~~ 236 (977)
+|.|+|.|.|..+.. .+.+.+ .+..+|.+...+......+|+.++|.|.+.| .|.+ .|.|+++|..+..
T Consensus 88 ~g~Y~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~----- 162 (218)
T 2rgs_A 88 GKEFKCKVNNKDLPSPIERTISKIKGLVRAPQVYILPPPAEQLSRKDVSLTCLVVGFNPGDISVEWTSNGHTEEN----- 162 (218)
T ss_dssp TCCEEEEEEETTCSSCEEEEECCCCCCCBCCEEEEECCCGGGTTSSEEEEEEEEEEEBSSCCEEEEEETTEEECC-----
T ss_pred CCeEEEEEECCcCCCcceEEEeecCCCCCCCEEEEECCChHHhcCCceEEEEEEEeeeCCCcEEEEEECCEeccC-----
Confidence 999999999987643 333332 4557888776655543346999999999998 5665 9999999987531
Q ss_pred cccEEEEEccCCc----eEEEEeecccCCCCeEEEEEEEcCCCce
Q psy574 237 VDNIQAEITSDGM----NLLKIQNVSRTAAPLIILCLGVNAAGSD 277 (977)
Q Consensus 237 ~~~~~~~~~~~g~----s~L~I~~v~~~d~G~Y~~C~a~n~~g~~ 277 (977)
..........+|. +.|.|.....+|.|.|+ |.|.|.....
T Consensus 163 ~~~~~~~~~~~gt~~~~s~l~v~~~~~~d~g~Yt-C~a~n~~l~~ 206 (218)
T 2rgs_A 163 YKDTAPVLDSDGSYFIYSKLNMKTSKWEKTDSFS-CNVRHEGLKN 206 (218)
T ss_dssp EEECCCEECTTSCEEEEEEEEEEHHHHHHCSCEE-EEEECTTSGG
T ss_pred ceecccEECCCCCEEEEEEEEECHHHcCCCCeEE-EEEEcCCCCC
Confidence 1111111122232 25666666666799999 9999987643
No 386
>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...
Probab=99.63 E-value=2.8e-15 Score=155.58 Aligned_cols=177 Identities=16% Similarity=0.246 Sum_probs=120.7
Q ss_pred EeCCCceEEeCCCeEEEEEEecccC--ceEEEEEECC--ee---C---------------CCCceEEec-----cceEEE
Q psy574 103 IRGPKDTTVSASSIIVFECSVGGDA--VLTVHWKRLG--SA---M---------------PEDRMSVLP-----SRSLQL 155 (977)
Q Consensus 103 ~~~p~~~~v~~G~~v~l~C~v~g~p--~~~i~W~k~~--~~---l---------------~~~~~~~~~-----~~~L~I 155 (977)
+..|....+.+|++++|.|.+.+.+ .+.+.|+|++ .. + ..+|+.+.. +.+|.|
T Consensus 4 l~qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I 83 (227)
T 1mju_H 4 LQQPGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQL 83 (227)
T ss_dssp EECCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEE
T ss_pred EcCCCCeEEcCCCCEEEEEEecCCccccceEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeCCCCeEEEEE
Confidence 3456677899999999999998776 6789999964 21 1 024665542 358999
Q ss_pred ccCccCCCeEEEEEEEeCCee-EEEEEEEEEee----CCeEEecCCCcEEeeCCeEEEEEEEecC-CCC-eEEEEEcCee
Q psy574 156 SDVRLEDAGEYVCEAENAVGK-ISASATLTVQM----APIVRERPSDLRLEVGRDAVFLCGIEGS-PPP-STFWMLEGNR 228 (977)
Q Consensus 156 ~~v~~~D~G~Y~C~a~n~~g~-~~~~~~L~V~~----~p~~~~~p~~~~v~~G~~v~L~C~~~g~-p~~-~i~W~~~g~~ 228 (977)
.+++.+|+|.|.|.+.+..+. ....+.|.|.. +|.+...+....+.+|+.++|.|.+.+. |.+ .+.|++++..
T Consensus 84 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~ 163 (227)
T 1mju_H 84 SSLTSDDSAVYYCANKLGWFPYWGQGTLVTVSAAKTTAPSVYPLAPVCGDTSGSSVTLGCLVKGYFPEPVTLTWNSGSLS 163 (227)
T ss_dssp CSCCGGGCEEEEEEEEETTEEEECCCEEEEECSSCCBCCEEEEECCCC------CEEEEEEEEEEBSSCCEEEEGGGTBC
T ss_pred CCCCcccCEEEEEEECCCCceEEcCcEEEEEcCCCCCCCEEEEecCCccccCCCcEEEEEEeecEeCCCeEEEEecCCCc
Confidence 999999999999999986432 22446788874 4555544333456789999999999985 766 9999999875
Q ss_pred eeecCCCc---cccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEEC
Q psy574 229 SLIYPGDR---VDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSG 287 (977)
Q Consensus 229 ~~~~~~~~---~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~ 287 (977)
+....... .+.+... +.|.|..++.+| |.|+ |.|.|..+.......+.+..
T Consensus 164 ~~~~~~~~~~~~g~~~~~------s~L~i~~~~~~~-g~Y~-C~a~n~~~~~~~~~~~~~~~ 217 (227)
T 1mju_H 164 SGVHTFPAVLQSDLYTLS------SSVTVTSSTWPS-QSIT-CNVAHPASSTKVDKKIEPRG 217 (227)
T ss_dssp TTEEECCCEEETTEEEEE------EEEEECTTTTTT-SCCE-EEEEEGGGTEEEEEECCCCC
T ss_pred CCcEECCceecCCeEEEE------EEEEEchhhcCC-CeEE-EEEEECCCCcceEEEeCCCC
Confidence 32110000 0222222 389999998888 9999 99999887766666665555
No 387
>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1
Probab=99.63 E-value=3.5e-15 Score=160.49 Aligned_cols=182 Identities=18% Similarity=0.303 Sum_probs=130.9
Q ss_pred EeCCCceEEeCCCeEEEEEEecccC--ceEEEEEECCe--eC------------------CCCceEEec-----cceEEE
Q psy574 103 IRGPKDTTVSASSIIVFECSVGGDA--VLTVHWKRLGS--AM------------------PEDRMSVLP-----SRSLQL 155 (977)
Q Consensus 103 ~~~p~~~~v~~G~~v~l~C~v~g~p--~~~i~W~k~~~--~l------------------~~~~~~~~~-----~~~L~I 155 (977)
...|....+.+|++++|.|.+.+.+ .+.+.|+|++. .+ ..+|+.+.. ..+|.|
T Consensus 30 ~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I 109 (282)
T 1qok_A 30 LQQSGAELVRSGTSVKLSCTASGFNIKDSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDTSSNTAYLQL 109 (282)
T ss_dssp EEECCCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEE
T ss_pred EECCCCEEEeCCCeEEEEEeccCCCCCCceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEecCCCeEEEEE
Confidence 3456678899999999999998774 57899999641 11 124555542 257999
Q ss_pred ccCccCCCeEEEEEEEeCCe---e--EEEEEEEEEeeC---------------CeEEecCCCcEEeeCCeEEEEEEEecC
Q psy574 156 SDVRLEDAGEYVCEAENAVG---K--ISASATLTVQMA---------------PIVRERPSDLRLEVGRDAVFLCGIEGS 215 (977)
Q Consensus 156 ~~v~~~D~G~Y~C~a~n~~g---~--~~~~~~L~V~~~---------------p~~~~~p~~~~v~~G~~v~L~C~~~g~ 215 (977)
.+++.+|+|.|+|.+.|..| . ....+.|.|..+ +.+...|....+.+|++++|.|.+.+.
T Consensus 110 ~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~ 189 (282)
T 1qok_A 110 SSLTSEDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSENVLTQSPAIMSASPGEKVTITCSASSS 189 (282)
T ss_dssp CSCCGGGCEEEEEEEECSSSSCCCEEECCCEEEEEEC---------------CCCEEEECSEEEECTTCCEEEEEEESSC
T ss_pred CcCChhhCEEEEEEeccCCCccceeeeCCCEEEEEecCCcccCCccCCCCccceEEecCCCEEEEcCCCcEEEEEEecCC
Confidence 99999999999999999865 1 224567888754 345556777789999999999999998
Q ss_pred CCCeEEEEE--cCeeee--ecC-----CCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCce-eEEEEEEE
Q psy574 216 PPPSTFWML--EGNRSL--IYP-----GDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSD-LARASLTV 285 (977)
Q Consensus 216 p~~~i~W~~--~g~~~~--~~~-----~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~-~~~~~l~V 285 (977)
+ +.+.|+| ++..+. ... .....++..... .+...|+|.+++.+|+|.|+ |.|.|..... ...+.|.|
T Consensus 190 ~-~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~L~I~~v~~~DsG~Y~-C~a~~~~~~~fg~gt~l~V 266 (282)
T 1qok_A 190 V-SYMHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSGS-GTSYSLTISRMEAEDAATYY-CQQRSSYPLTFGAGTKLEL 266 (282)
T ss_dssp C-SCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE-TTEEEEEESSCCGGGCEEEE-EEECSSSSCEECCCEEEEE
T ss_pred C-ceEEEEEECCCCCcEEEEEEecCCCCcccCCeEEecC-CCEEEEEEccCChhHCEEEE-EEEeeCCCceEeCCEEEEE
Confidence 8 8999999 454331 110 012356666532 34568999999999999999 9998864322 23456777
Q ss_pred EC
Q psy574 286 SG 287 (977)
Q Consensus 286 ~~ 287 (977)
..
T Consensus 267 ~~ 268 (282)
T 1qok_A 267 KR 268 (282)
T ss_dssp C-
T ss_pred ec
Confidence 65
No 388
>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H
Probab=99.63 E-value=9.9e-16 Score=161.92 Aligned_cols=175 Identities=14% Similarity=0.216 Sum_probs=119.7
Q ss_pred ecccceEEeCCCcEEEEEECCCC--CCCCeEEEEeCC--E---Ee------------ecCCCceEEEecC-----cEEEE
Q psy574 10 VQPKSQRVAAGDTALLECGPPRG--HPEPTLVWKKNG--H---PI------------DFENSKRLRLVDG-----TNLAI 65 (977)
Q Consensus 10 ~~p~~~~v~~G~~v~L~C~~~~g--~P~~~v~W~k~g--~---~l------------~~~~~~r~~~~~~-----g~L~I 65 (977)
.+|..+.+.+|++|+|.|.+ .+ .+...+.|+|.. . .+ .....+|+.+..+ .+|.|
T Consensus 5 ~~p~~v~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I 83 (253)
T 3liz_H 5 VESGGGLVQPGGSLKLSCAA-SGFTFSSFAMSWGRQTPDKRLELVATINSNGASTYYPDTVKGRFTISRDNAKNTLFLQM 83 (253)
T ss_dssp EEECCCEECTTCCEEEEEEE-ESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEECCTTTTTTCEEEEEGGGTEEEEEE
T ss_pred EcCCCEEECCCCcEEEEEEe-eCccccCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeCCCCEEEEEE
Confidence 45778999999999999998 44 345789999832 1 11 0112357766543 24999
Q ss_pred cCCCCCCCeEEEEEEEecC---ceeeeEeEEEEEE----cCCeEEeCCCceEEeCCCeEEEEEEecc-cCce-EEEEEEC
Q psy574 66 QDSRKTDDGRYQCVVKNVA---GTRESTDAVLRVL----VKPYIIRGPKDTTVSASSIIVFECSVGG-DAVL-TVHWKRL 136 (977)
Q Consensus 66 ~~v~~~D~G~Y~C~a~n~~---g~~~s~~~~l~V~----~~P~~~~~p~~~~v~~G~~v~l~C~v~g-~p~~-~i~W~k~ 136 (977)
.+++.+|+|.|.|.+.+.. .......+.|.|. .+|.+...+....+..|+.++|.|.+.| .|.+ .+.|+++
T Consensus 84 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~ 163 (253)
T 3liz_H 84 SSLKSEDTAMYYCTRDPAGRAWFAYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSG 163 (253)
T ss_dssp CSCCGGGCEEEEEEECCBTTTBCCEECCCEEEEECSSCCBCCEEEEECC------CCEEEEEEEEEEEBSSCCEEEEGGG
T ss_pred CCCChhhCEEEEEEEecCCcceeeEECCCEEEEEeccCCCCCeEEEecCCcccCCCCcEEEEEEEeeEeCCCeEEEEEeC
Confidence 9999999999999998752 1112334577776 4566664444456678999999999977 6766 8999999
Q ss_pred CeeCCC---C----ceEEeccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEEe
Q psy574 137 GSAMPE---D----RMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQ 186 (977)
Q Consensus 137 ~~~l~~---~----~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~ 186 (977)
+..+.. . ...+...+.|.|.....+| |.|+|.|.|..+.......|.+.
T Consensus 164 ~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-g~ytC~v~~~~~~~~~~~~~~~~ 219 (253)
T 3liz_H 164 SLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKIVPR 219 (253)
T ss_dssp TBCTTEEECCCEEETTEEEEEEEEEEETTSTTT-SCCEEEEEEGGGTEEEEEECCCC
T ss_pred CeecceEeCCccccCCeEEEEEEEEEcHHHCCC-ceEEEEEEECCCCcceEEEecCc
Confidence 874310 0 0112223679999999999 99999999998876666666554
No 389
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative splicing, cell adhesion, cell membrane, glycoprotein, HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R 3epc_R* 3epd_R* 3epf_R*
Probab=99.63 E-value=2.1e-16 Score=163.28 Aligned_cols=173 Identities=17% Similarity=0.255 Sum_probs=127.7
Q ss_pred CCCceEEeCCCeEEEEEEecc-cCc----eEEEEEECCeeCC--------------CCceEEec--------cceEEEcc
Q psy574 105 GPKDTTVSASSIIVFECSVGG-DAV----LTVHWKRLGSAMP--------------EDRMSVLP--------SRSLQLSD 157 (977)
Q Consensus 105 ~p~~~~v~~G~~v~l~C~v~g-~p~----~~i~W~k~~~~l~--------------~~~~~~~~--------~~~L~I~~ 157 (977)
.|.++.+.+|+++.|.|.+.+ .+. ..+.|+|++.... .+|..+.. +.+|.|.+
T Consensus 5 ~p~~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~I~~ 84 (221)
T 3eow_R 5 APTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRDASLRMFG 84 (221)
T ss_dssp CCCCCCCCCSSCCEEECCCCCCSSSCCCEEEEEECBSSSCSSCCCEEESSSEEECSCSSCEEESSCSSCCCCCCEEECCC
T ss_pred CCCcEEEEeCCCEEEEeeeccCCCCCccceEEEEEeCCCCceEEEEECCCCCCcCCCCcEEEecccCCCCCCCceEEEcc
Confidence 456677889999999999943 443 3599999965321 34455443 56899999
Q ss_pred CccCCCeEEEEEEEeCC-eeEEEEEEEEEeeCCeEEecCCCcEEeeCCeE-EEEEEEe-cCCCCeEEEEEcCeeeeecC-
Q psy574 158 VRLEDAGEYVCEAENAV-GKISASATLTVQMAPIVRERPSDLRLEVGRDA-VFLCGIE-GSPPPSTFWMLEGNRSLIYP- 233 (977)
Q Consensus 158 v~~~D~G~Y~C~a~n~~-g~~~~~~~L~V~~~p~~~~~p~~~~v~~G~~v-~L~C~~~-g~p~~~i~W~~~g~~~~~~~- 233 (977)
++.+|+|.|+|.+.+.. +.....+.|.|..+|.+...+.... ..|+.+ .|.|.+. +.|.+.+.|++++.......
T Consensus 85 v~~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~P~~~~~~~~~~-~~g~~~~~l~C~~~~g~P~p~v~W~k~~~~~~~~~~ 163 (221)
T 3eow_R 85 LRVEDEGSYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQ-LTGEPVPMARCVSTGGRPPAQITWHSDLGGMPQTSQ 163 (221)
T ss_dssp SSCCCCSCBEEEEEESSSCSCEEECCCCCCCCCEEEEEEECCC-CCSSSCCEEEEEEESCSSCCCEEEECSSSCCCCCEE
T ss_pred CChHHCeEEEEEEEeCCCCceEEEEEEEEEECCCceeecCCcc-cCCceEEEEEEECCCccCCCeeEEEeCCCCCCccce
Confidence 99999999999999976 6778889999999998876554444 678888 4999987 89999999999764432110
Q ss_pred --CCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEE
Q psy574 234 --GDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTV 285 (977)
Q Consensus 234 --~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V 285 (977)
....+.+. ..+.|.|..+..+|.|.|+ |.|.|..+.......|..
T Consensus 164 ~~~~~~~~~~------~~s~L~i~~~~~~d~g~yt-C~a~n~~~~~~~~~~v~~ 210 (221)
T 3eow_R 164 VPGFLSGTVT------VTSLWILVPSSQVDGKQVT-CKVEHESFEKPQLLTVSL 210 (221)
T ss_dssp ECCCCBTTBC------CEEEEECCCCSCCCCCCEE-EEECCSCSSSCEEEEECC
T ss_pred eecCCCCcEE------EEEEEEEeCCHHHCCCeEE-EEEECCCCCCCeEEEEEE
Confidence 00111111 1248999999999999999 999999887665554443
No 390
>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A
Probab=99.63 E-value=2.7e-16 Score=160.74 Aligned_cols=164 Identities=15% Similarity=0.202 Sum_probs=113.7
Q ss_pred eecccceE-EeCCCcEEEEEECCCCCC----CCeEEEEeCCEEeecC--------CCceEEEecCcEEEEcCCCCCCCeE
Q psy574 9 RVQPKSQR-VAAGDTALLECGPPRGHP----EPTLVWKKNGHPIDFE--------NSKRLRLVDGTNLAIQDSRKTDDGR 75 (977)
Q Consensus 9 ~~~p~~~~-v~~G~~v~L~C~~~~g~P----~~~v~W~k~g~~l~~~--------~~~r~~~~~~g~L~I~~v~~~D~G~ 75 (977)
...|.... +.+|++++|.|.+ .+.| ...|.|+|++..+... ..+++. ..+.|.|.+++.+|+|.
T Consensus 6 ~~~P~~~~~v~~G~~v~L~C~~-~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~--~~~~L~I~~~~~~D~G~ 82 (207)
T 2vol_A 6 IFPPKPKDVLTITLTPKVTCVV-VDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFR--SVSELPIMHQDWLNGKE 82 (207)
T ss_dssp EECCCHHHHHSTTSCCEEEEEE-EEECTTCCCCEEEEEETTEEECCCEEECCCEETTTEEE--EEEEEECCHHHHHTTCC
T ss_pred EeCcChhhhhccCCceEEEEEE-eCcccCCCceEEEEEECCccccccccCCCcCcCCCcEE--EEEEEEEehhHcCCCCE
Confidence 33455444 8999999999999 5553 3589999999877321 112222 13579999999999999
Q ss_pred EEEEEEecCceee-eEeEEE--EEEcCCeEEeCCCceEEeCCCeEEEEEEeccc-Cc-eEEEEEECCeeCCCCc---eEE
Q psy574 76 YQCVVKNVAGTRE-STDAVL--RVLVKPYIIRGPKDTTVSASSIIVFECSVGGD-AV-LTVHWKRLGSAMPEDR---MSV 147 (977)
Q Consensus 76 Y~C~a~n~~g~~~-s~~~~l--~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~-p~-~~i~W~k~~~~l~~~~---~~~ 147 (977)
|+|.|.|..+... ...+.+ .+..+|.+...+......+|+.+.|.|.+.|. |. +.|.|+|++..+.... ...
T Consensus 83 Y~C~a~~~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~ 162 (207)
T 2vol_A 83 FKCRVNSAAFPAPIEKTISKTKGRPKAPQVYTLPPPKEQMAKDKVSLTCMITDFFPEDITVEWESNGQPAENYKNTQPIM 162 (207)
T ss_dssp EEEEEECTTCSSCEEEEECCCCCCCBCCEEEEECCCTGGGSSSEEEEEEEEEEEBSSCCEEEEEETTEECSCEEECCCEE
T ss_pred EEEEEEccCCCCceEEEeccCCCCCcCCeEEEeCCCHHHhcCCceEEEEEEeeEECCCCEEEEEECCEeccCcccCCceE
Confidence 9999999876421 223333 45567877655544334469999999999874 55 4899999999875421 122
Q ss_pred eccce------EEEccCccCCCeEEEEEEEeCCe
Q psy574 148 LPSRS------LQLSDVRLEDAGEYVCEAENAVG 175 (977)
Q Consensus 148 ~~~~~------L~I~~v~~~D~G~Y~C~a~n~~g 175 (977)
..+++ |.|.....+|.|.|+|.|.|...
T Consensus 163 ~~~g~~~~~s~l~i~~~~~~~~g~ytC~a~n~~l 196 (207)
T 2vol_A 163 DTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEGL 196 (207)
T ss_dssp CTTSCEEEEEEEEEEHHHHSSCCEEEEEEECTTS
T ss_pred CCCCCEEEEEEEEECHHHcCCCCEEEEEEECCCC
Confidence 23443 55555556789999999999754
No 391
>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A
Probab=99.63 E-value=4.3e-15 Score=156.39 Aligned_cols=171 Identities=16% Similarity=0.213 Sum_probs=122.9
Q ss_pred EEeCCCceEEeCCCeEEEEEEecccC-----ceEEEEEECC--eeC-------------CCCceEEec---cceEEEccC
Q psy574 102 IIRGPKDTTVSASSIIVFECSVGGDA-----VLTVHWKRLG--SAM-------------PEDRMSVLP---SRSLQLSDV 158 (977)
Q Consensus 102 ~~~~p~~~~v~~G~~v~l~C~v~g~p-----~~~i~W~k~~--~~l-------------~~~~~~~~~---~~~L~I~~v 158 (977)
+...|..+.+.+|++++|.|.+.+.+ .+.+.|+|++ ..+ ..+|+.+.. ..+|.|.++
T Consensus 4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v 83 (247)
T 1svz_A 4 MTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRV 83 (247)
T ss_dssp EEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSC
T ss_pred EEecCCeEEecCCCCEEEEEeCCCcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEeccCCCEEEEEECCC
Confidence 45567788999999999999998887 6899999953 111 134555432 247999999
Q ss_pred ccCCCeEEEEEEEeCCee-EEEEEEEEEeeCC-------------eEEecCCCcEEeeCCeEEEEEEEecCC--CCeEEE
Q psy574 159 RLEDAGEYVCEAENAVGK-ISASATLTVQMAP-------------IVRERPSDLRLEVGRDAVFLCGIEGSP--PPSTFW 222 (977)
Q Consensus 159 ~~~D~G~Y~C~a~n~~g~-~~~~~~L~V~~~p-------------~~~~~p~~~~v~~G~~v~L~C~~~g~p--~~~i~W 222 (977)
+.+|+|.|+|.+.|..+. ....+.|.|..++ .....+....+.+|++++|.|.+.+.+ .+.+.|
T Consensus 84 ~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W 163 (247)
T 1svz_A 84 EAEDLGIYYCFQGSHFPPTFGGGTKLEIKGGGGSGGGGSGGGGSEVQLQQSGPELKKPGETVKISCKATNYAFTDYSMHW 163 (247)
T ss_dssp CGGGCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEE
T ss_pred CHHHCEEEEEEEccCCccEECCCEEEEEECCccccccccccccCceEEeCCCceeecCCCcEEEEEEEcCcccCCcEEEE
Confidence 999999999999987553 3344678887542 233444556799999999999999875 568999
Q ss_pred EEcC--eee--ee--cC--------CCccccEEEEEc-cCCceEEEEeecccCCCCeEEEEEEEcC
Q psy574 223 MLEG--NRS--LI--YP--------GDRVDNIQAEIT-SDGMNLLKIQNVSRTAAPLIILCLGVNA 273 (977)
Q Consensus 223 ~~~g--~~~--~~--~~--------~~~~~~~~~~~~-~~g~s~L~I~~v~~~d~G~Y~~C~a~n~ 273 (977)
+|++ ... +. .. ....+|+.+... ..+...|.|.+++.+|+|.|. |.|.|.
T Consensus 164 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~-C~a~n~ 228 (247)
T 1svz_A 164 VKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLKNEDTATYF-CVRDRH 228 (247)
T ss_dssp EEECTTCCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCGGGCEEEE-EEEEEG
T ss_pred EEeCCCCCcEEEEEEEcCCCccccCccccCcEEEEEecCCCEEEEEECCCChhHCEEEE-EEEecc
Confidence 9974 211 11 00 012456766542 234469999999999999999 999985
No 392
>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A
Probab=99.63 E-value=6.8e-16 Score=157.74 Aligned_cols=169 Identities=17% Similarity=0.220 Sum_probs=118.4
Q ss_pred EEeCCCceE-EeCCCeEEEEEEecccC----ceEEEEEECCeeCCCCce---------EEeccceEEEccCccCCCeEEE
Q psy574 102 IIRGPKDTT-VSASSIIVFECSVGGDA----VLTVHWKRLGSAMPEDRM---------SVLPSRSLQLSDVRLEDAGEYV 167 (977)
Q Consensus 102 ~~~~p~~~~-v~~G~~v~l~C~v~g~p----~~~i~W~k~~~~l~~~~~---------~~~~~~~L~I~~v~~~D~G~Y~ 167 (977)
++..|.... +.+|++++|.|.+.|.+ ...|.|+|++..+..... .+.....|.|.+++.+|+|.|+
T Consensus 5 ~~~~P~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~ 84 (207)
T 2vol_A 5 FIFPPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFRSVSELPIMHQDWLNGKEFK 84 (207)
T ss_dssp EEECCCHHHHHSTTSCCEEEEEEEEECTTCCCCEEEEEETTEEECCCEEECCCEETTTEEEEEEEEECCHHHHHTTCCEE
T ss_pred EEeCcChhhhhccCCceEEEEEEeCcccCCCceEEEEEECCccccccccCCCcCcCCCcEEEEEEEEEehhHcCCCCEEE
Confidence 445565554 88999999999998774 348999999977653211 1112357999999999999999
Q ss_pred EEEEeCCee--EEEEEEE--EEeeCCeEEecCCCcEEeeCCeEEEEEEEecC-CC-CeEEEEEcCeeeeecCCCccccEE
Q psy574 168 CEAENAVGK--ISASATL--TVQMAPIVRERPSDLRLEVGRDAVFLCGIEGS-PP-PSTFWMLEGNRSLIYPGDRVDNIQ 241 (977)
Q Consensus 168 C~a~n~~g~--~~~~~~L--~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g~-p~-~~i~W~~~g~~~~~~~~~~~~~~~ 241 (977)
|.|.|..+. .++.+.+ .+..+|.+...+.......|+.++|.|.+.|. |. ..|.|+++|..+... ....
T Consensus 85 C~a~~~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~-----~~~~ 159 (207)
T 2vol_A 85 CRVNSAAFPAPIEKTISKTKGRPKAPQVYTLPPPKEQMAKDKVSLTCMITDFFPEDITVEWESNGQPAENY-----KNTQ 159 (207)
T ss_dssp EEEECTTCSSCEEEEECCCCCCCBCCEEEEECCCTGGGSSSEEEEEEEEEEEBSSCCEEEEEETTEECSCE-----EECC
T ss_pred EEEEccCCCCceEEEeccCCCCCcCCeEEEeCCCHHHhcCCceEEEEEEeeEECCCCEEEEEECCEeccCc-----ccCC
Confidence 999998775 3344444 45678888766655444469999999999985 44 389999999865211 1111
Q ss_pred EEEccCCc----eEEEEeecccCCCCeEEEEEEEcCCCc
Q psy574 242 AEITSDGM----NLLKIQNVSRTAAPLIILCLGVNAAGS 276 (977)
Q Consensus 242 ~~~~~~g~----s~L~I~~v~~~d~G~Y~~C~a~n~~g~ 276 (977)
.....+|. +.|.|.....+|.|.|+ |.|.|....
T Consensus 160 ~~~~~~g~~~~~s~l~i~~~~~~~~g~yt-C~a~n~~l~ 197 (207)
T 2vol_A 160 PIMDTDGSYFVYSKLNVQKSNWEAGNTFT-CSVLHEGLH 197 (207)
T ss_dssp CEECTTSCEEEEEEEEEEHHHHSSCCEEE-EEEECTTSG
T ss_pred ceECCCCCEEEEEEEEECHHHcCCCCEEE-EEEECCCCC
Confidence 11122332 25677777777899999 999998754
No 393
>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Probab=99.63 E-value=2.4e-15 Score=157.78 Aligned_cols=169 Identities=17% Similarity=0.202 Sum_probs=118.7
Q ss_pred ccceecccceEEeCCCcEEEEEECCCCC--CCCeEEEEeCC--E---Eee-----------cC-CCceEEEec-----Cc
Q psy574 6 EEFRVQPKSQRVAAGDTALLECGPPRGH--PEPTLVWKKNG--H---PID-----------FE-NSKRLRLVD-----GT 61 (977)
Q Consensus 6 ~~~~~~p~~~~v~~G~~v~L~C~~~~g~--P~~~v~W~k~g--~---~l~-----------~~-~~~r~~~~~-----~g 61 (977)
+.+...|..+.+.+|++|+|.|.+ .+. +.+.|.|+|+. . .+- .. ..+|+.+.. +.
T Consensus 2 ~~v~q~p~~v~~~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~ 80 (242)
T 1hxm_B 2 GHLEQPQISSTKTLSKTARLECVV-SGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTS 80 (242)
T ss_dssp CEEECCCSEEEEETTCCEEEEEEE-ESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEE
T ss_pred CccCcCCceEEecCCCcEEEEEEe-CCccccCceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecCCCcEE
Confidence 346777889999999999999998 443 66899999842 2 111 01 356777653 34
Q ss_pred EEEEcCCCCCCCeEEEEEEEecCc-----e-eeeEeEEEEEEcC-------CeEEe-CCCceEEeCCCeEEEEEEeccc-
Q psy574 62 NLAIQDSRKTDDGRYQCVVKNVAG-----T-RESTDAVLRVLVK-------PYIIR-GPKDTTVSASSIIVFECSVGGD- 126 (977)
Q Consensus 62 ~L~I~~v~~~D~G~Y~C~a~n~~g-----~-~~s~~~~l~V~~~-------P~~~~-~p~~~~v~~G~~v~l~C~v~g~- 126 (977)
+|.|.+++.+|+|.|.|.+.+... . .....+.|.|..+ |.... .|....+.+|+.++|.|.+.|.
T Consensus 81 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~p~~~v~~p~~~~~~~g~~v~L~C~~~g~~ 160 (242)
T 1hxm_B 81 TLTIHNVEKQDIATYYCALWEAQQELGKKIKVFGPGTKLIITDKQLDADVSPKPTIFLPSIAETKLQKAGTYLCLLEKFF 160 (242)
T ss_dssp EEEECSCCGGGCEEEEEEEEEECSSTTCEEEEECCCEEEEEESSCCCSCCSCBCCCCCCCGGGGGSSSCEEEEEEEEEES
T ss_pred EEEECCCCcccCEEEEEeeecCCccccccceeEcCcEEEEEcccccCCCcCCCceEECCChhhcccCCCceEEEEEeeEE
Confidence 799999999999999999988631 1 1223467888753 32222 2444456679999999999876
Q ss_pred Cc-eEEEEEECCe-eCCCCc---eEEe-----ccceEEEccCccCCCeEEEEEEEeCCeeE
Q psy574 127 AV-LTVHWKRLGS-AMPEDR---MSVL-----PSRSLQLSDVRLEDAGEYVCEAENAVGKI 177 (977)
Q Consensus 127 p~-~~i~W~k~~~-~l~~~~---~~~~-----~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~ 177 (977)
|. +.|.|++++. .+.... .... ....|.|.++.. | |.|+|.|.|..+..
T Consensus 161 P~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~-g~y~C~v~n~~~~~ 219 (242)
T 1hxm_B 161 PDVIKIHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVPEKSL-D-KEHRCIVRHENNKN 219 (242)
T ss_dssp SCCEEEEEEESSSCCCCCCEECCCEECSSSEEEEEEEEECTGGG-G-SCEEEEEEETTSGG
T ss_pred CCCeEEEEEcCCCEeecCccccceecCCCcEEEEEEEEEccccC-C-CEEEEEEEeCCCCC
Confidence 64 7999999987 554321 1111 124688887775 5 99999999987753
No 394
>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}
Probab=99.62 E-value=2.8e-15 Score=160.97 Aligned_cols=171 Identities=13% Similarity=0.236 Sum_probs=121.6
Q ss_pred cccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCC--EE---ee------------cCCCceEEEec----CcEE
Q psy574 5 REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNG--HP---ID------------FENSKRLRLVD----GTNL 63 (977)
Q Consensus 5 ~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g--~~---l~------------~~~~~r~~~~~----~g~L 63 (977)
...+...|..+.+.+|++++|.|.+ .+.|.+.|.|+|++ .. +. .....|+.+.. +.+|
T Consensus 24 ~~~v~~~p~~v~v~~G~~v~L~C~~-~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL 102 (279)
T 2wbj_D 24 GAVVSQHPSWVISKSGTSVKIECRS-LDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTL 102 (279)
T ss_dssp CCCEEEECSEEEEETTSCEEEEEEE-SSSCEEEEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEECSSSEEEE
T ss_pred cceEEeCCCeEEecCCCeEEEEEEe-CCCCCCeEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeCCCCEEEE
Confidence 3566778889999999999999999 67788999999963 11 10 01246777763 2479
Q ss_pred EEcCCCCCCCeEEEEEEEecCc-----eeeeEeEEEEEEc------CCeEEe-CCCceEEeCCCeEEEEEEeccc-Cc-e
Q psy574 64 AIQDSRKTDDGRYQCVVKNVAG-----TRESTDAVLRVLV------KPYIIR-GPKDTTVSASSIIVFECSVGGD-AV-L 129 (977)
Q Consensus 64 ~I~~v~~~D~G~Y~C~a~n~~g-----~~~s~~~~l~V~~------~P~~~~-~p~~~~v~~G~~v~l~C~v~g~-p~-~ 129 (977)
.|.+++.+|+|.|+|.+.+..+ ......+.|.|.. +|.+.. .|....+.+|+.++|.|.+.|. |. +
T Consensus 103 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~ 182 (279)
T 2wbj_D 103 TVTSAHPEDSSFYICSARDLTSGANNEQFFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHV 182 (279)
T ss_dssp EESSCCGGGCEEEEEEEEETTCBTSCCEEECCCEEEEEESCGGGCBCCEEEEEECCHHHHHHHSCCEEEEEEEEEBSSCE
T ss_pred EEccCCccCCEEEEEEEcccccCCccceeeCCCEEEEEecCCCCCCCCEEEEECCCcccccCCCceEEEEEEeeEcCCCc
Confidence 9999999999999999998421 1112335677764 455543 2444445579999999999876 54 7
Q ss_pred EEEEEECCeeCCCCceEE---------ecc------ceEEEccCccCC-CeEEEEEEEeCCee
Q psy574 130 TVHWKRLGSAMPEDRMSV---------LPS------RSLQLSDVRLED-AGEYVCEAENAVGK 176 (977)
Q Consensus 130 ~i~W~k~~~~l~~~~~~~---------~~~------~~L~I~~v~~~D-~G~Y~C~a~n~~g~ 176 (977)
.|.|+|++..+..+.... ..+ ..|.|.....+| .|.|+|.|.|....
T Consensus 183 ~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~~~YtC~v~n~~~~ 245 (279)
T 2wbj_D 183 ELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLS 245 (279)
T ss_dssp EEEEEETTEECCTTEEECSSCEESSTTSTTCCEEEEEEEECCSTTTTCTTCEEEEEEEECCBC
T ss_pred EEEEEECCEECCCCcccccccccccccCCCCcEEEEEEEEEChHHhccCCCEEEEEEEeCCCC
Confidence 999999998886542211 022 237777777654 77899999997643
No 395
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Probab=99.62 E-value=7.4e-16 Score=156.92 Aligned_cols=155 Identities=12% Similarity=0.194 Sum_probs=109.0
Q ss_pred EeCCCeEEEEEEecccCceEEEEEECCeeCCCCceEEeccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEEee---
Q psy574 111 VSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQM--- 187 (977)
Q Consensus 111 v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~~--- 187 (977)
+.+|++++|.|.+ |.+.|.|+|++..+... ...+++|.|.+++.+|+|.|+|.+.+... ..+.|.|..
T Consensus 15 ~~~G~~v~L~C~~---p~~~i~W~k~g~~l~~~---~~~~~~L~i~~v~~~DsG~Y~C~~~~~~s---~~~~v~v~~~~~ 85 (204)
T 1sy6_A 15 YQEDGSVLLTCDA---EAKNITWFKDGKMIGFL---TEDKKKWNLGSNAKDPRGMYQCKGSQNKS---KPLQVYYRMGSA 85 (204)
T ss_dssp CCSSSEEEEEECS---CSSEEEEEETTEEEEEE---ESSCCCEEEEEGGGCCEEEEEEESSSSCC---CCEEEEEEC---
T ss_pred ecCCCeEEEEEcC---CCCEEEEEECCEECCCC---CCCCCeEEeCCCCcCCCEEEEEEecCCCC---eeEEEEEEEecc
Confidence 3589999999998 77899999999887532 12457899999999999999999755321 224444430
Q ss_pred ----------------------------CCeEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCcccc
Q psy574 188 ----------------------------APIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDN 239 (977)
Q Consensus 188 ----------------------------~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~ 239 (977)
++.+...| .....+|++++|.|. +.|.+.+.|++++..+.... ....
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~v~~~G~~v~L~C~--g~p~p~i~W~k~~~~l~~~~--~~~~ 160 (204)
T 1sy6_A 86 DDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTP-YKVSISGTTVILTCP--QYPGSEILWQHNDKNIGGDE--DDKN 160 (204)
T ss_dssp ---------------------------------CCC-CEEEEETTEEEEECS--CCCSSCEEEEETTEEESCCT--TCTT
T ss_pred ccccccccccccccccccccccccccccccceecCC-ceeeecCCcEEEEcC--CCCCCceEEEECCEECCCcc--CCce
Confidence 12222222 223339999999998 78999999999998764321 1111
Q ss_pred EEEEEccCCceEEEEeec-ccCCCCeEEEEEEEcCCCce-eEEEEEEE
Q psy574 240 IQAEITSDGMNLLKIQNV-SRTAAPLIILCLGVNAAGSD-LARASLTV 285 (977)
Q Consensus 240 ~~~~~~~~g~s~L~I~~v-~~~d~G~Y~~C~a~n~~g~~-~~~~~l~V 285 (977)
+.. . .+ .|.|.++ +.+|+|.|+ |.|.|..|.. +....|.+
T Consensus 161 ~~~-~--~~--~L~I~~v~~~~D~G~Y~-C~A~N~~g~~~s~~l~l~~ 202 (204)
T 1sy6_A 161 IGS-D--ED--HLSLKEFSELEQSGYYV-CYPRGSKPEDANFYLYLRA 202 (204)
T ss_dssp EEE-E--TT--EEEETTCCHHHHCEEEE-EEETTSCGGGSSCEEEEEE
T ss_pred Eec-C--CC--EEEEeeCCccccCEEEE-EEeccCCCCceeEEEEEEE
Confidence 221 1 34 9999999 999999999 9999999963 44455544
No 396
>2edx_A Protein tyrosine phosphatase, receptor type, F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=3.7e-15 Score=140.47 Aligned_cols=116 Identities=27% Similarity=0.380 Sum_probs=100.5
Q ss_pred eeCCCCCceEEeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCcc--eEEE-EecCCcCe
Q psy574 624 VDGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSA--LINM-TVSASTPT 700 (977)
Q Consensus 624 g~g~~s~~~~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~~--~~~~-~~~~~~~~ 700 (977)
|.|++|..+.++|.+++|+.+|.++++...+.++|.|+|++|+....+|.|.+|+|+|+..+... .... .+....++
T Consensus 1 G~g~~S~~~~~~T~~~~P~~~P~~l~~~~~~~~sv~l~W~~p~~~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (134)
T 2edx_A 1 GSSGSSGTIEARTAQSTPSAPPQKVMCVSMGSTTVRVSWVPPPADSRNGVITQYSVAYEAVDGEDRGRHVVDGISREHSS 80 (134)
T ss_dssp CCCCCCCCCCCSSCCSCCSSCSEEEEEECSSSSEEEEEEECCCSTTCSSCEEEEEEEEEESSSSCCCCEEECCCBTTCSE
T ss_pred CCCCCcCCEEEEeCCCCCCCCCcccEEEeCCCCEEEEEecCCCccCCCCceeEEEEEEEECCCCCcccEEEEeeCCCccE
Confidence 57889999999999999998999999999899999999999976678999999999998865221 1111 23577899
Q ss_pred EEecCCCCCceEEEEEEEEcCCCcCCCCCceEEeecCCC
Q psy574 701 LLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGP 739 (977)
Q Consensus 701 ~~l~~L~p~t~Y~~~V~A~~~~G~g~~S~~~~~~t~~~~ 739 (977)
++|.+|+|++.|.|+|+|+|.+|.|++|.++.++|....
T Consensus 81 ~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~~~~ 119 (134)
T 2edx_A 81 WDLVGLEKWTEYRVWVRAHTDVGPGPESSPVLVRTDEDV 119 (134)
T ss_dssp EEEESCCTTCEEEEEEEEEETTBCCCCCCCEEEECCCCS
T ss_pred EEeCCCCCCCEEEEEEEEEcCCCcCCCCCCEEeecCCCC
Confidence 999999999999999999999999999999999998765
No 397
>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}
Probab=99.62 E-value=2.3e-15 Score=160.80 Aligned_cols=168 Identities=18% Similarity=0.281 Sum_probs=118.6
Q ss_pred ccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEe--CCEE---e-ecCC---------Cc-eEEEec----CcEEEE
Q psy574 6 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKK--NGHP---I-DFEN---------SK-RLRLVD----GTNLAI 65 (977)
Q Consensus 6 ~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k--~g~~---l-~~~~---------~~-r~~~~~----~g~L~I 65 (977)
..+...|..+.+.+|++++|.|.+ .+ +.+.|.|+| .+.. + .... .. |+.+.. +.+|.|
T Consensus 28 ~~v~~~p~~v~v~~G~~v~L~C~~-~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I 105 (270)
T 3qib_D 28 MKVIQTPRYLVKGQGQKAKMRCIP-EK-GHPVVFWYQQNKNNEFKFLINFQNQEVLQQIDMTEKRFSAECPSNSPCSLEI 105 (270)
T ss_dssp CCCEEECSEEEEETTSCEEEEEEC-CT-TCCEEEEEEECTTCCEEEEEEEETTEEEEECHHHHHHEEEECCTTSCEEEEE
T ss_pred eeEEeCCCeEEEcCCCCEEEEEEe-cC-CCceEEEEEECCCCCcEEEEEECCCCceecCCccCCcEEEEeCCCcEEEEEE
Confidence 456777888999999999999998 43 778999998 2211 1 0000 11 666653 457999
Q ss_pred cCCCCCCCeEEEEEEEecCc---eeeeEeEEEEEEc------CCeEEe-CCCceEEeCCCeEEEEEEecc-cCce-EEEE
Q psy574 66 QDSRKTDDGRYQCVVKNVAG---TRESTDAVLRVLV------KPYIIR-GPKDTTVSASSIIVFECSVGG-DAVL-TVHW 133 (977)
Q Consensus 66 ~~v~~~D~G~Y~C~a~n~~g---~~~s~~~~l~V~~------~P~~~~-~p~~~~v~~G~~v~l~C~v~g-~p~~-~i~W 133 (977)
.+++.+|+|.|+|.+.+..+ ......+.|.|.. +|.+.. .+....+.+|+.++|.|.+.| .|.+ .+.|
T Consensus 106 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W 185 (270)
T 3qib_D 106 QSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSW 185 (270)
T ss_dssp SSCCGGGCEEEEEEEESCTTCCCCEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEE
T ss_pred CCCCHhHCeEEEEEEecCCCccceEECCcEEEEEccccccccCCceEEECCCccccccCCceEEEEEecceeCCCeEEEE
Confidence 99999999999999986421 1223445778875 555443 344445567999999999987 6656 8999
Q ss_pred EECCeeCCCCceEE---------------eccceEEEccCccCC-CeEEEEEEEeCCe
Q psy574 134 KRLGSAMPEDRMSV---------------LPSRSLQLSDVRLED-AGEYVCEAENAVG 175 (977)
Q Consensus 134 ~k~~~~l~~~~~~~---------------~~~~~L~I~~v~~~D-~G~Y~C~a~n~~g 175 (977)
+|+|..+..+.... .-...|.|.....+| .|.|+|.|.|...
T Consensus 186 ~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~l 243 (270)
T 3qib_D 186 WVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGL 243 (270)
T ss_dssp EETTEEECTTEEECSSCEESCTTSSSCCEEEEEEEEEEHHHHHSTTCEEEEEEEECCB
T ss_pred EECCEECCCCcccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEecCC
Confidence 99998886532111 112457788887777 9999999998754
No 398
>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}
Probab=99.62 E-value=2.4e-15 Score=159.46 Aligned_cols=168 Identities=14% Similarity=0.191 Sum_probs=117.9
Q ss_pred cceecccceEEeCCCcEEEEEECCCCCC--CCeEEEEeCC--EEee----c-----------CCCceEEEec-----CcE
Q psy574 7 EFRVQPKSQRVAAGDTALLECGPPRGHP--EPTLVWKKNG--HPID----F-----------ENSKRLRLVD-----GTN 62 (977)
Q Consensus 7 ~~~~~p~~~~v~~G~~v~L~C~~~~g~P--~~~v~W~k~g--~~l~----~-----------~~~~r~~~~~-----~g~ 62 (977)
....+|..+.+.+|++|+|.|.+ .+.| .+.|.|+|+. ..+. . ...+|+.+.. +.+
T Consensus 8 ~~~~~p~~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~s 86 (261)
T 2xqy_G 8 VQLQQPGAELVKPGASVKMSCKA-SGYSFTSYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDKSSSTVY 86 (261)
T ss_dssp CEEECCSEEEECTTCCEEEEEEE-ESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEE
T ss_pred eeEECCCCEEEcCCCCEEEEEEe-CCcccCCceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecCCCCEEE
Confidence 34456888999999999999998 5555 6789999863 2211 0 1135777653 247
Q ss_pred EEEcCCCCCCCeEEEEEEEecCce--eeeEeEEEEEEc----CCeEEeCCCceEEeCCCeEEEEEEeccc-Cce-EEEEE
Q psy574 63 LAIQDSRKTDDGRYQCVVKNVAGT--RESTDAVLRVLV----KPYIIRGPKDTTVSASSIIVFECSVGGD-AVL-TVHWK 134 (977)
Q Consensus 63 L~I~~v~~~D~G~Y~C~a~n~~g~--~~s~~~~l~V~~----~P~~~~~p~~~~v~~G~~v~l~C~v~g~-p~~-~i~W~ 134 (977)
|.|.+++.+|+|.|.|.+.+..+. .....+.|.|.. +|.+...+....+.+|+.++|.|.+.|. |.+ .|.|+
T Consensus 87 L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~~v~~g~~v~L~C~~~g~~P~~i~v~W~ 166 (261)
T 2xqy_G 87 IQLSSLTSEDSAVYYCGRLGYVYGFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWN 166 (261)
T ss_dssp EEECSCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCCC--CCSEEEEEEEEEEEBSSCCEEEEG
T ss_pred EEEcCCCcccCeEEEEEEecCCCcceEECCCEEEEEccCCCCCCeEEEeCCCccccCCCcEEEEEEEEeEeCCCCEEEEe
Confidence 999999999999999999986431 122345788874 4555443323346789999999999774 766 99999
Q ss_pred ECCeeCCC---Cce----EEeccceEEEccCccCCCeEEEEEEEeCCee
Q psy574 135 RLGSAMPE---DRM----SVLPSRSLQLSDVRLEDAGEYVCEAENAVGK 176 (977)
Q Consensus 135 k~~~~l~~---~~~----~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~ 176 (977)
+++..+.. ... .......|.|..+..+| |.|+|.|.|....
T Consensus 167 k~g~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~YtC~v~n~~~~ 214 (261)
T 2xqy_G 167 SGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASS 214 (261)
T ss_dssp GGTCCTTEEECCCEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGT
T ss_pred cCCCcCceEecCceecCCcEEEEEEEEEeccccCC-CEEEEEEEECCCC
Confidence 99876531 111 11123579999988888 9999999997654
No 399
>4doh_B Interleukin-20 receptor subunit beta; IL10 family cytokine receptor complex, alpha helical cytokin beta sandwhich receptor fold, signaling complex; HET: NAG; 2.80A {Homo sapiens}
Probab=99.62 E-value=9.4e-15 Score=148.09 Aligned_cols=183 Identities=12% Similarity=0.050 Sum_probs=139.8
Q ss_pred EEEEEeeEeCCCeEEEEEEecC-CCccceEEEEEEe----cCCCCCceEEEEeecCccceEEECC-CCCCcEEEEEEEEe
Q psy574 547 IELTEVKPMTSTSVKLTWEILN-TDYIEGVYIYSRG----LDPPASVAMLTVLHAGEASGFLVTG-LAHYSRYEFFLVPF 620 (977)
Q Consensus 547 ~~~l~~~~~~~tsv~lsW~~p~-~~~i~~Y~v~y~~----~~~~~~~~~~~~~~~~~~~~~~i~~-L~p~t~Y~~~V~a~ 620 (977)
|.++++...+-. ..|+|+++. ......|.|+|+. ......|...........+.+.|++ |..+..|.++|+|.
T Consensus 10 P~nv~~~s~n~~-~iL~W~p~~~~~~~~~Y~V~y~~~~~~~~~~~~W~~~~~C~~i~~~~Cdlt~~~~~~~~Y~~RVrA~ 88 (206)
T 4doh_B 10 PQQLSVLSTNMK-HLLMWSPVIAPGETVYYSVEYQGEYESLYTSHIWIPSSWCSLTEGPECDVTDDITATVPYNLRVRAT 88 (206)
T ss_dssp CCCCEEEEETTE-EEEECCCCCCSSSCCEEEEEEEEHHHHHHSTTCCEEEEEEEEESSSEEECTTTCCSSSCEEEEEEEE
T ss_pred CCeeEEEEeCCE-EEEEECCCCCCCCCEEEEEEEEEeccccCCCccceecccccCCCCCEEcCCccccCCCCEEEEEEEE
Confidence 367888888877 799999993 3345789999995 2235789886666556778999995 87899999999999
Q ss_pred ecceeCCCCCceEEeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCcceE-EEEecCCcC
Q psy574 621 FGSVDGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALI-NMTVSASTP 699 (977)
Q Consensus 621 n~~g~g~~s~~~~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~~~~-~~~~~~~~~ 699 (977)
+..+.+.++....|.+....-.+||. +.+. ....+|.|.|.+| +.+..|+|.|++.+..... ...+....+
T Consensus 89 ~~~~~S~w~~~~~f~~~~~t~i~PP~-v~v~-~~~~~i~V~~~~p------~~~l~Y~v~y~~~~~~~~~~~~~~~~~~~ 160 (206)
T 4doh_B 89 LGSQTSAWSILKHPFNRQSTILTRPG-MEIT-KDGFHLVIELEDL------GPQFEFLVAYWRREPGAEEHVKMVRSGGI 160 (206)
T ss_dssp ETTEECCCEECSSCBCGGGCBCCCCC-EEEE-EETTEEEEEECCC------CTTCEEEEEEEESSSSCCCEEEEECCSSS
T ss_pred cCCCccCccccccccchhhcccCCCe-EEEE-eCCCEEEEEecCC------CCcEEEEEEEEEcCCCceeEEeEEccCCe
Confidence 99999888776666554333334664 6666 4678999999987 5678999999987633322 233455568
Q ss_pred eEEecCCCCCceEEEEEEEEcC--CCcCCCCCceEEeecCC
Q psy574 700 TLLLTNLSAGIRYSVSLAATNR--AGTGPYSRPALLSLTSG 738 (977)
Q Consensus 700 ~~~l~~L~p~t~Y~~~V~A~~~--~G~g~~S~~~~~~t~~~ 738 (977)
.++|.+|+|++.|.|+|+|++. .|.|.+|.+..+.|...
T Consensus 161 ~~~i~~L~p~t~Ycv~Vra~~~~~~~~g~~S~~~C~~t~~~ 201 (206)
T 4doh_B 161 PVHLETMEPGAAYCVKAQTFVKAIGRYSAFSQTECVEVQGE 201 (206)
T ss_dssp EEEEEECCSSSCEEEEEEEEEGGGTEECCCCCCEEECC---
T ss_pred EEEEeCCCCCCcEEEEEEEEecCCCCCCCCCCCEeEEccch
Confidence 8999999999999999999986 48999999999988643
No 400
>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}
Probab=99.62 E-value=3.7e-16 Score=162.94 Aligned_cols=171 Identities=13% Similarity=0.231 Sum_probs=102.8
Q ss_pred CCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCe--eC-------------CCCceEEe---ccceEEEccCcc
Q psy574 99 KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGS--AM-------------PEDRMSVL---PSRSLQLSDVRL 160 (977)
Q Consensus 99 ~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~--~l-------------~~~~~~~~---~~~~L~I~~v~~ 160 (977)
.+.+...|..+.+.+|++++|.|.+.+.|.+.|.|+|++. .+ ..+++... .+.+|.|.+++.
T Consensus 23 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~ 102 (233)
T 3bqu_C 23 ETTVTQSPASLSMSIGEKVTIRCITSTDIDDDMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSSGYGTDFVFTIENMLS 102 (233)
T ss_dssp CCCEEEECSBC-------CCEEEEEEEEESSCEEEEEECTTSCCEEEECTTSCBCTTSCTTCCCCEEEEEEEEC-----C
T ss_pred ceeEEEcCCeEEEecCCCEEEEEecCCcCCCeEEEEEECCCCCcEEEEEcCCccCCCCCccEEeeccCCEEEEEECCCCH
Confidence 3455666778889999999999999888878899999642 11 02233322 223799999999
Q ss_pred CCCeEEEEEEEeCCee-EEEEEEEEEee---CCeEEecCCCcEEeeCCeEEEEEEEecCC-CC-eEEEEEcCeeeeec--
Q psy574 161 EDAGEYVCEAENAVGK-ISASATLTVQM---APIVRERPSDLRLEVGRDAVFLCGIEGSP-PP-STFWMLEGNRSLIY-- 232 (977)
Q Consensus 161 ~D~G~Y~C~a~n~~g~-~~~~~~L~V~~---~p~~~~~p~~~~v~~G~~v~L~C~~~g~p-~~-~i~W~~~g~~~~~~-- 232 (977)
+|+|.|+|.+.|..+. ....+.|.|.. +|.+...+....+.+|+.++|.|.+.+.+ .+ .+.|+|+|..+...
T Consensus 103 ~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~ 182 (233)
T 3bqu_C 103 EDVADYYCLQSDNLPYTFGGGTNLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVL 182 (233)
T ss_dssp CCCSEEEEEECSSSSCCBCCCCBC---CCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEEC-----CCEE
T ss_pred HHCEEEEEEEecCCceeecCCEEEEEeCCCCCCEEEEeCCCHHhhcCCceEEEEEEccccCCceEEEEEECCeeCCCCce
Confidence 9999999999987653 22334566664 67777655555455799999999998854 43 79999999765321
Q ss_pred -----CCCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCc
Q psy574 233 -----PGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGS 276 (977)
Q Consensus 233 -----~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~ 276 (977)
.....+.+... +.|.|..++.+|.|.|+ |.|.|....
T Consensus 183 ~~~~~~~~~~~~~~~~------s~L~i~~~~~~d~g~Y~-C~a~n~~~~ 224 (233)
T 3bqu_C 183 NSWTDQDSKDSTYSMS------STLTLTKDEYERHNSYT-CEATHKTST 224 (233)
T ss_dssp EEECCCCTTTCCEEEE------EEEEEEHHHHHTCCCEE-EEEEEC---
T ss_pred EecCCccCCCCCEEEE------EEEEECHHHhCCCCCEE-EEEEeCCCC
Confidence 00011222222 37999999999999999 999997543
No 401
>1x5h_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=99.61 E-value=1e-15 Score=144.01 Aligned_cols=115 Identities=29% Similarity=0.392 Sum_probs=100.3
Q ss_pred eeCCCCCceEEeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCcc-eEEEEecCCcCeEE
Q psy574 624 VDGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSA-LINMTVSASTPTLL 702 (977)
Q Consensus 624 g~g~~s~~~~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~~-~~~~~~~~~~~~~~ 702 (977)
|.|++|..+.++|.+++|+.+|.++++...+.++|.|+|++|..+..||.|.+|+|+|+..+... .....+.++.++++
T Consensus 1 G~g~~S~~~~~~T~~~~P~~~P~~l~~~~~~~~sv~l~W~~p~~~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (132)
T 1x5h_A 1 GSSGSSGDVAVRTLSDVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRKASRKSDVTETLVSGTQLSQL 80 (132)
T ss_dssp CCCCCCCCCCCCCCCSSCCCCCEEEEEECCSSSEEEEEEECCCTTTCCSCEEEEBCEEEETTEEEEEECCBCCTTCCEEE
T ss_pred CcCCCCCCEEEeCCCCCCCCCCeeeEEEeCCCCEEEEEEeCCCCcCCCceEeEEEEEEEECCCCCccEEEEeCCCccEEE
Confidence 57889999999999999998999999998899999999999964448999999999998865222 22233667889999
Q ss_pred ecCCCCCceEEEEEEEEcCCCcCCCCCceEEeecCC
Q psy574 703 LTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSG 738 (977)
Q Consensus 703 l~~L~p~t~Y~~~V~A~~~~G~g~~S~~~~~~t~~~ 738 (977)
|.+|+|++.|.|+|+|+|.+|.|++|.++.++|...
T Consensus 81 i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~~~ 116 (132)
T 1x5h_A 81 IEGLDRGTEYNFRVAALTINGTGPATDWLSAETFES 116 (132)
T ss_dssp EECCCSSCEEEEECEEEETTEEEEECCCEEEECCSS
T ss_pred eCCCCCCCEEEEEEEEEcCCccCCCCcCEEeEcCcc
Confidence 999999999999999999999999999999999775
No 402
>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E
Probab=99.61 E-value=2.8e-15 Score=157.72 Aligned_cols=171 Identities=17% Similarity=0.228 Sum_probs=123.5
Q ss_pred eEEeCCCceEEeCCCeEEEEEEecccCceEEEEEE----------------CCeeCCC----CceEEec----cceEEEc
Q psy574 101 YIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKR----------------LGSAMPE----DRMSVLP----SRSLQLS 156 (977)
Q Consensus 101 ~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k----------------~~~~l~~----~~~~~~~----~~~L~I~ 156 (977)
.+...|..+.+.+|++++|.|.+.+.+.+.|.|+| ++..... +|+.+.. +.+|.|.
T Consensus 3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~ 82 (246)
T 4dzb_B 3 VVSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTVT 82 (246)
T ss_dssp CEEEECSEEEEETTSCEEEEEEESSSCCCSEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEEETTEEEEEEC
T ss_pred ccEECCcEEEEeCCCcEEEEeEecCCCceEEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEecCCCEEEEEEC
Confidence 35566778899999999999999988999999999 2222211 4555442 3479999
Q ss_pred cCccCCCeEEEEEEEeCCe----eEEEEEEEEEee------CCeEEe-cCCCcEEeeCCeEEEEEEEecCCCC--eEEEE
Q psy574 157 DVRLEDAGEYVCEAENAVG----KISASATLTVQM------APIVRE-RPSDLRLEVGRDAVFLCGIEGSPPP--STFWM 223 (977)
Q Consensus 157 ~v~~~D~G~Y~C~a~n~~g----~~~~~~~L~V~~------~p~~~~-~p~~~~v~~G~~v~L~C~~~g~p~~--~i~W~ 223 (977)
+++.+|+|.|+|.+.+..+ .....+.|.|.. +|.+.. .+....+.+|+.++|.|.+.+.+++ .+.|+
T Consensus 83 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~i~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~ 162 (246)
T 4dzb_B 83 SAHPEDSSFYICSARTSGDFGEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWW 162 (246)
T ss_dssp SCCGGGCEEEEEEECCSSGGGCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEE
T ss_pred CCCHHHCEEEEEEEecCCCCcceEEcCCEEEEEecCCCcccCCceEeecCCchhccCCCcEEEEEEEccCcCCceEEEEE
Confidence 9999999999999987643 233456777763 555543 4555567779999999999987655 89999
Q ss_pred EcCeeeeecCCC-----------ccccEEEEEccCCceEEEEeecccCC-CCeEEEEEEEcCCCcee
Q psy574 224 LEGNRSLIYPGD-----------RVDNIQAEITSDGMNLLKIQNVSRTA-APLIILCLGVNAAGSDL 278 (977)
Q Consensus 224 ~~g~~~~~~~~~-----------~~~~~~~~~~~~g~s~L~I~~v~~~d-~G~Y~~C~a~n~~g~~~ 278 (977)
++|..+...... ..+.+.+. +.|.|...+.+| .|.|+ |.|.|......
T Consensus 163 k~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~------s~l~i~~~~~~d~~g~Yt-C~v~~~~~~~~ 222 (246)
T 4dzb_B 163 VNGKEVHSGVCTDPQPLKEQPALNDSRYALS------SRLRVSATFWQNPRNHFR-CQVQFYGLSEN 222 (246)
T ss_dssp ETTEEECTTEEECSSCEESSTTSTTCCEEEE------EEEEEEHHHHTCTTCEEE-EEEEECCBCTT
T ss_pred ECCEECCCCcccccccccccccCCCCCEEEE------EEEEECHHHhccCCCeEE-EEEEecCCCCc
Confidence 999876321000 12233332 268999998888 99999 99999866543
No 403
>3qt2_A Interleukin-5 receptor subunit alpha; cytokine type I receptor fold, fibronectin type III modules, helical bundle, cytokine, ligand-receptor complex; HET: BGC; 2.55A {Homo sapiens} PDB: 3va2_C
Probab=99.61 E-value=2.9e-13 Score=146.13 Aligned_cols=278 Identities=15% Similarity=0.115 Sum_probs=181.1
Q ss_pred CCCCCCCCCCeEEeeCCCceEEEEEcCCC-CCCcccceEEEEEeecCCCCCCCCCCCCcccEEEeceecCcCeEEEEccC
Q psy574 395 STYPGPPTKPTLVNQTANGLTLAWSRNNQ-IGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLT 473 (977)
Q Consensus 395 ~~~p~~P~~~~v~~~~~~sv~lsW~~p~~-~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~i~~L~ 473 (977)
.....||.++.+...+...+.|+|++|.. ....-...|.++++..... .|..... ......+|.
T Consensus 9 ~~~~~pP~nl~i~~~~~~~~~l~W~~~p~~~~~~~~l~Y~v~~~~~~~~-----------~w~~~~t----~~~~~~~L~ 73 (317)
T 3qt2_A 9 KISLLPPVNFTIKVTGLAQVLLQWKPNPDQEQRNVNLEYQVKINAPKED-----------DYETRIT----ESKAVTILH 73 (317)
T ss_dssp CCCCCCCEEEEEEEEETTEEEEEEECCTTSSCSSSCCEEEEEEEESSCE-----------EEEESSS----EEEEECCCT
T ss_pred ccccCCCcceEEEECCCceEEEEECCCCccccCcCcEEEEEEECCCCCc-----------ccEeecc----ccccccccC
Confidence 35678999999998888899999999654 2223357899998776543 7886542 233466676
Q ss_pred CCCeEEEEEEEEcCCCCCC-CCCCCceEEeeccccccccccCCcceeecCCCCCCCcchHHHHhhcccccCCceEEEEEe
Q psy574 474 VGLTYTFLVRALNSHGLSA-PSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEV 552 (977)
Q Consensus 474 p~t~Y~~~V~a~n~~G~s~-~S~~s~~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~g~~~~~~~~~l~~~~~~~~~~l~~ 552 (977)
.+ |.++|++.+..|.+. +|.++....- .+ | |. ++..+.+|.+
T Consensus 74 ~~--~~~rVrt~~~~~~s~~~S~w~~~~~~---~~---------------~-----G~------------p~~~p~nlsC 116 (317)
T 3qt2_A 74 MG--FSASVRTILQNDHSLLASSWASAELH---AP---------------P-----GS------------PGTSIVNLTC 116 (317)
T ss_dssp TC--EEEEEEEEEECSSCEEECCCEEEEEC---CC---------------S-----CB------------GGGSCEEEEE
T ss_pred CC--eEEEEEEEECCCCCcccccccccccc---CC---------------C-----CC------------CCCcceeeEE
Confidence 54 999999977655433 5666543322 11 1 11 2334688998
Q ss_pred eEeC-----------CCeEEEEEEec-CCCccceEEEEEEecCCCCCceEEEE-eecC--ccceEEECCCC----CCcEE
Q psy574 553 KPMT-----------STSVKLTWEIL-NTDYIEGVYIYSRGLDPPASVAMLTV-LHAG--EASGFLVTGLA----HYSRY 613 (977)
Q Consensus 553 ~~~~-----------~tsv~lsW~~p-~~~~i~~Y~v~y~~~~~~~~~~~~~~-~~~~--~~~~~~i~~L~----p~t~Y 613 (977)
..-+ ...++++|++. .....+.|.++|+..+ .+..+.. .... ....+.+.... .+..|
T Consensus 117 ~~~~~~~~~~~~~~~~~~l~CtW~pG~~~~~~t~Y~L~y~~~~---~~~eC~~y~~~~~~~~~~C~f~~~~~~~~~~~~~ 193 (317)
T 3qt2_A 117 TTNTTEDNYSRLRSYQVSLHCTWMVGTDAPEDTQYFLYYRYGS---WTEECQEYSMDTLGRNIACWFPRTFILSKGRDWL 193 (317)
T ss_dssp EEEEEECSCSSSCCEEEEEEEEEECCTTCCTTCEEEEEEEETT---EEEECCCEEECTTSCEEEEEESSCSCCTTCCSEE
T ss_pred EEccccccccccccccceEEEEeeCCCCCCCCeeEEEEEEeCC---CCeeCCccccCCCcceeEEEeCCccccccCcEEE
Confidence 8777 58999999997 3344568999998754 2333221 1112 23477777653 46789
Q ss_pred EEEEEEeecceeCCCCCceEEeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCcceEEEE
Q psy574 614 EFFLVPFFGSVDGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMT 693 (977)
Q Consensus 614 ~~~V~a~n~~g~g~~s~~~~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~~~~~~~ 693 (977)
.|.|.+.+..+.- .+....+.....+-+.||.++++... .+.+.|+|++|... ....-+.|+|+|+..+........
T Consensus 194 ~i~V~gss~~~~i-~s~~~~~~l~~iVkp~PP~nL~v~~~-~~~l~v~W~~P~~~-~~~~~L~Yevryr~~~~~~~~~~~ 270 (317)
T 3qt2_A 194 AVLVNGSSKHSAI-RPFDQLFALHAIDQINPPLNVTAEIE-GTRMSIQWEKPVSA-FPIHCFDYEVKIHNTRNGYLQIEK 270 (317)
T ss_dssp EEEEEEECTTSCB-CCEEEEEEHHHHBCCCCCEEEEEEEE-TTEEEEEEECCSSS-SCGGGEEEEEEEEETTTCCEEEEE
T ss_pred EEEEEcCCCCccc-cccceEEEHHHcCcCCCCceeEEEEe-CCcEEEEECCCCcc-cccCceEEEEEEEeCCCCcceEEE
Confidence 9999865433221 12224455555555569999998854 57999999998532 223457899999985533233333
Q ss_pred ecCCcCeEEecCCCCCceEEEEEEEEcCC-----C-cCCCCCceEE
Q psy574 694 VSASTPTLLLTNLSAGIRYSVSLAATNRA-----G-TGPYSRPALL 733 (977)
Q Consensus 694 ~~~~~~~~~l~~L~p~t~Y~~~V~A~~~~-----G-~g~~S~~~~~ 733 (977)
+ ..+++.+ +|.|++.|.|+|||.... | .|.||+++.+
T Consensus 271 ~--~~~~~~l-~l~p~~~Y~vqVR~k~~~~~~~~g~WSeWS~~~~~ 313 (317)
T 3qt2_A 271 L--MTNAFIS-IIDDLSKYDVQVRAAVSSMCREAGLWSEWSQPIYV 313 (317)
T ss_dssp E--SSSEEEE-ECCTTCCEEEEEEEEECTTTSSCCCCCCCCCCEEE
T ss_pred E--eeeEEEe-ecCCCCEEEEEEEEeecCCCCCCCCcCCCCCCEEE
Confidence 3 3466666 499999999999999542 3 4678888876
No 404
>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}
Probab=99.61 E-value=6.9e-15 Score=155.71 Aligned_cols=170 Identities=16% Similarity=0.213 Sum_probs=120.3
Q ss_pred eCCCceEEeCCCeEEEEEEeccc--CceEEEEEECC--eeC-------------CCCceEEec---cceEEEccCccCCC
Q psy574 104 RGPKDTTVSASSIIVFECSVGGD--AVLTVHWKRLG--SAM-------------PEDRMSVLP---SRSLQLSDVRLEDA 163 (977)
Q Consensus 104 ~~p~~~~v~~G~~v~l~C~v~g~--p~~~i~W~k~~--~~l-------------~~~~~~~~~---~~~L~I~~v~~~D~ 163 (977)
..|....+.+|++++|.|.+.+. +.+.+.|+|+. ... ..+++.... ..+|.|.+++.+|+
T Consensus 7 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~Ds 86 (256)
T 3ux9_B 7 TQPPSVSGAPGQRVTISCSGSSSNIGSNYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSKSGTSASLAITGLQSEDE 86 (256)
T ss_dssp BCCSEEEECTTCCEEEEEECCTTTTTTSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGC
T ss_pred ecCCcEEEcCCCcEEEEEecCCCCCCCceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEccCCEEEEEECCCChhhC
Confidence 34556789999999999999876 78899999953 111 123554432 23799999999999
Q ss_pred eEEEEEEEeCCe---eEEEEEEEEEeeCCe--------------------EEecCCCcEEeeCCeEEEEEEEecCC--CC
Q psy574 164 GEYVCEAENAVG---KISASATLTVQMAPI--------------------VRERPSDLRLEVGRDAVFLCGIEGSP--PP 218 (977)
Q Consensus 164 G~Y~C~a~n~~g---~~~~~~~L~V~~~p~--------------------~~~~p~~~~v~~G~~v~L~C~~~g~p--~~ 218 (977)
|.|+|.+.+..+ .....+.|.|..++. ....+....+.+|++++|.|.+.+.+ .+
T Consensus 87 G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~ 166 (256)
T 3ux9_B 87 ADYYCQVRDNNENEWVFGGGTKLTVLGSGGSTITSYNVYYTKLSSSGSEVQLVESGGGLVQPGGSLRLSCAASGFTFSSY 166 (256)
T ss_dssp EEEEEEEEETTTTEEEECCCEEEEEC----------------------CCEEEEECCEEECTTCCEEEEEEEESSCGGGS
T ss_pred EEEEEEEEECCCCceEECCCEEEEEECCCCCcCccceeEEeecCCCccceeEEcCCCeEEcCCCeEEEEEEEeCCccccc
Confidence 999999998653 233556788876541 23334455689999999999999877 67
Q ss_pred eEEEEEc--Ceeee----ec--------CCCccccEEEEEcc-CCceEEEEeecccCCCCeEEEEEEEcCC
Q psy574 219 STFWMLE--GNRSL----IY--------PGDRVDNIQAEITS-DGMNLLKIQNVSRTAAPLIILCLGVNAA 274 (977)
Q Consensus 219 ~i~W~~~--g~~~~----~~--------~~~~~~~~~~~~~~-~g~s~L~I~~v~~~d~G~Y~~C~a~n~~ 274 (977)
.+.|+|+ +..+. .. .....+|+.+.... .+...|+|.+++.+|+|.|. |.|.|..
T Consensus 167 ~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~-C~~~~~~ 236 (256)
T 3ux9_B 167 AMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYY-CARYIDF 236 (256)
T ss_dssp EEEEEEECTTCCEEEEEEECSSSSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEE-EEEEETT
T ss_pred EEEEEEECCCCCcEEEEEEccCCCceecCccccceEEEEecCCCCEEEEEECCCChhhCEEEE-EEEEcCC
Confidence 9999997 32221 11 01123477766542 23467999999999999999 9999864
No 405
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Probab=99.61 E-value=2.4e-15 Score=148.22 Aligned_cols=147 Identities=15% Similarity=0.135 Sum_probs=110.9
Q ss_pred ceEEeCCCeEEEEEEecccCceEEEEEECCeeCC-------------CCceEEe-ccceEEEccCccCCCeEEEEEEEeC
Q psy574 108 DTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMP-------------EDRMSVL-PSRSLQLSDVRLEDAGEYVCEAENA 173 (977)
Q Consensus 108 ~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~-------------~~~~~~~-~~~~L~I~~v~~~D~G~Y~C~a~n~ 173 (977)
.+.+.+|++|+|.|.+.+ |.+.|.|+|++..+. .+|..+. .+++|.|.+++.+|+|.|+|.+.|.
T Consensus 4 ~v~~~~G~~VtL~c~~~~-~~~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~~~~~~sL~I~~v~~~DsG~Y~C~~~n~ 82 (171)
T 1ccz_A 4 QIYGVVYGNVTFHVPSNV-PLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNI 82 (171)
T ss_dssp EEEEETTCCEEECCCCSS-CCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTTC
T ss_pred EEEEEcCCCEEEcCCCCC-CcceEEEEeCCcEEEEEcCCCcccccccCCcEEEeCCCCeEEECCCChhhCceEEEEEeCC
Confidence 457889999999999854 888999999986431 1344443 5689999999999999999999988
Q ss_pred CeeEEEEEEEEEeeCC---eEEecCCCcEEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCccccEEEEEccCCce
Q psy574 174 VGKISASATLTVQMAP---IVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMN 250 (977)
Q Consensus 174 ~g~~~~~~~L~V~~~p---~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~s 250 (977)
.+ ...+.|.|..++ .+..... ..+|.|.+.+.|.+.+.|++++..+... ...
T Consensus 83 ~~--~~~~~L~V~~~~~~p~i~~~~~--------~~~L~C~~~~~p~p~i~W~~~~~~l~~~---------------~~~ 137 (171)
T 1ccz_A 83 TD--TMKFFLYVLEMVSKPMIYWECS--------NATLTCEVLEGTDVELKLYQGKEHLRSL---------------RQK 137 (171)
T ss_dssp CS--CEEEEEEEECCCCCCEEEEETT--------TTEEEEECSSCSSCEEEEEETTEEEEEE---------------SSS
T ss_pred CC--cEEEEEEEECcCCCCEEEEecC--------CcEEEEEeCCCCCcEEEEEECCEECcCC---------------cce
Confidence 77 677888888653 3332221 1379999999999999999999876411 111
Q ss_pred EEEEeecccCCCCeEEEEEEEcCCCceeEEEEE
Q psy574 251 LLKIQNVSRTAAPLIILCLGVNAAGSDLARASL 283 (977)
Q Consensus 251 ~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l 283 (977)
.|.+. ...|.|.|+ |.|.|..+.....+.|
T Consensus 138 ~l~~~--~~~~~g~Y~-C~a~N~~~~~~~~~~l 167 (171)
T 1ccz_A 138 TMSYQ--WTNLRAPFK-CKAVNRVSQESEMEVV 167 (171)
T ss_dssp EEEEE--CSCCSSCEE-EEEEETTEEEEEEECC
T ss_pred EEEEe--ccCCCceEE-EEEEcccCcccceeEE
Confidence 34443 377899999 9999999987766554
No 406
>1eer_B Epobp, erythropoietin receptor; signal transduction, hematopoietic cytokine, cytokine receptor class 1, complex (cytokine/receptor); 1.90A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1cn4_A 2jix_B 1eba_A* 1ern_A 1ebp_A
Probab=99.61 E-value=5.5e-15 Score=153.12 Aligned_cols=185 Identities=16% Similarity=0.164 Sum_probs=132.9
Q ss_pred EEEEEeeEeCCCeEEEEEEec-C-CCccceEEEEEEecCCCCCceEEEEe-----ecCccceEEE--CCCCCCcEEEEEE
Q psy574 547 IELTEVKPMTSTSVKLTWEIL-N-TDYIEGVYIYSRGLDPPASVAMLTVL-----HAGEASGFLV--TGLAHYSRYEFFL 617 (977)
Q Consensus 547 ~~~l~~~~~~~tsv~lsW~~p-~-~~~i~~Y~v~y~~~~~~~~~~~~~~~-----~~~~~~~~~i--~~L~p~t~Y~~~V 617 (977)
+.++.+...+...+.++|+++ . +....+|.|.|+..+ ..|..+... .......+.| .++..++.|.|+|
T Consensus 24 P~nl~C~~~~~~~l~C~W~~~~~~~~~~~~y~l~y~~~~--~~~~~C~~~~~~~~~~~~~~~C~~~~~~~~~~~~y~~~V 101 (227)
T 1eer_B 24 PEELLCFTERLEDLVCFWEEAASAGVGPGQYSFSYQLED--EPWKLCRLHQAPTARGAVRFWCSLPTADTSSFVPLELRV 101 (227)
T ss_dssp TTSCEEEBSSSSCCEEEEEESCCSSCCTTSEEEEEEETT--SCCEEECEEEEEETTTEEEEEEECCGGGCCBSSCEEEEE
T ss_pred CcCCeEECCCCCEEEEEecCCCCCCCCCccEEEEEEcCC--CCceeccceeccCCCCCceEEEEeCCCcceeeEEEEEEE
Confidence 357889998999999999999 3 336789999998764 234433211 1112233444 4788999999999
Q ss_pred EEeecceeCCCCCceEEeccCCCCCCCCceeEEEEec-CcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCc-ceEEEEec
Q psy574 618 VPFFGSVDGKPSNLRAVRTLECEPSGVPQLTDPVLLN-ATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNS-ALINMTVS 695 (977)
Q Consensus 618 ~a~n~~g~g~~s~~~~~~T~~~~P~~~P~~v~~~~~~-~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~-~~~~~~~~ 695 (977)
.|.+..+ .....+.+.+.+++.||.++++...+ .+++.|+|++|.....++ ++.|+|+|+..+.. ......+.
T Consensus 102 ~a~~~~~----~~~~~~~~~~~v~p~pP~~l~~~~~~~~~~l~v~W~~P~~~~~~~-~l~Yev~y~~~~~~~w~~~~~~~ 176 (227)
T 1eer_B 102 TAASGAP----RYHRVIHINEVVLLDAPVGLVARLADESGHVVLRWLPPPETPMTS-HIRYEVDVSAGQGAGSVQRVEIL 176 (227)
T ss_dssp EETTSCE----EEEEEECGGGSEECCCCEEEEEEECSSTTCEEEEEECCSSCSCGG-GEEEEEEEECCSSSCCCCEEEEC
T ss_pred EecCCCc----cEEEEEEeeeeEccCcCcceEEEEcCCCCeEEEEEcCCCCccccc-ceEEEEEEEcCCCCCcEEEEEEe
Confidence 9975333 22345667776666799999998764 789999999996333334 88999999986533 32223445
Q ss_pred CCcCeEEecCCCCCceEEEEEEEEcC----CCc-CCCCCceEEeecCC
Q psy574 696 ASTPTLLLTNLSAGIRYSVSLAATNR----AGT-GPYSRPALLSLTSG 738 (977)
Q Consensus 696 ~~~~~~~l~~L~p~t~Y~~~V~A~~~----~G~-g~~S~~~~~~t~~~ 738 (977)
...+++.|.+|+|++.|.|+|||.+. .|. |.||+++.+.|+..
T Consensus 177 ~~~~~~~l~~L~p~t~Y~vqVRa~~~~~~~~g~wS~WS~~~~~~t~~d 224 (227)
T 1eer_B 177 EGRTECVLSNLRGRTRYTFAVRARMAEPSFGGFWSEWSEPVSLLTPSD 224 (227)
T ss_dssp TTCCEEEECCCCSSCEEEEEEEEEECTTTCCEECCCCCCCEEEEC---
T ss_pred cCceEEEEcccCCCCeEEEEEEEeECCCCCCCcCCCCCCCEEEECccc
Confidence 67889999999999999999999975 243 99999999998543
No 407
>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C
Probab=99.61 E-value=1.1e-14 Score=154.96 Aligned_cols=173 Identities=12% Similarity=0.202 Sum_probs=124.6
Q ss_pred CeEEeCCCceEEeCCCeEEEEEEecccC------ceEEEEEECC--eeC-------------CCCceEEec---cceEEE
Q psy574 100 PYIIRGPKDTTVSASSIIVFECSVGGDA------VLTVHWKRLG--SAM-------------PEDRMSVLP---SRSLQL 155 (977)
Q Consensus 100 P~~~~~p~~~~v~~G~~v~l~C~v~g~p------~~~i~W~k~~--~~l-------------~~~~~~~~~---~~~L~I 155 (977)
+.+...|..+.+.+|++++|.|.+.+.+ .+.+.|+|+. ..+ ..+|+.+.. ..+|.|
T Consensus 6 ~~v~q~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I 85 (264)
T 2gjj_A 6 IVLTQTPSSLPVSVGEKVTMTCKSSQTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSGSGTDFTLTI 85 (264)
T ss_dssp CCEEEECSEEEEETTCCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEE
T ss_pred cceEecCCeEEecCCCcEEEEeEcCCcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEecCCCEEEEEE
Confidence 4566677888999999999999998877 6889999952 211 134555542 348999
Q ss_pred ccCccCCCeEEEEEEEeCCee-EEEEEEEEEeeCC------------------eE-EecCCCcEEeeCCeEEEEEEEecC
Q psy574 156 SDVRLEDAGEYVCEAENAVGK-ISASATLTVQMAP------------------IV-RERPSDLRLEVGRDAVFLCGIEGS 215 (977)
Q Consensus 156 ~~v~~~D~G~Y~C~a~n~~g~-~~~~~~L~V~~~p------------------~~-~~~p~~~~v~~G~~v~L~C~~~g~ 215 (977)
.+++.+|+|.|.|.+.+..+. ....+.|.|..+| .+ ...+....+.+|++++|.|.+.+.
T Consensus 86 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~ 165 (264)
T 2gjj_A 86 GSVKAEDLAVYYCQQYSNYPWTFGGGTRLEIKRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPEVVKTGASVKISCKASGY 165 (264)
T ss_dssp SSCCGGGCEEEEEEECSSSSCEECCCEEEEEECC-------------------CCEEEECCCEEECTTCCEEEEEEEESS
T ss_pred CCCCHHHCEEEEEEEecCCccEecCCEEEEEEcCCcccccccccccccccccCcEEEeCCCCEEEcCCCcEEEEEEEeCC
Confidence 999999999999999987543 2344678887653 22 223444578999999999999988
Q ss_pred CC--CeEEEEEcC--ee--eeec--CC--------CccccEEEEEc-cCCceEEEEeecccCCCCeEEEEEEEcC
Q psy574 216 PP--PSTFWMLEG--NR--SLIY--PG--------DRVDNIQAEIT-SDGMNLLKIQNVSRTAAPLIILCLGVNA 273 (977)
Q Consensus 216 p~--~~i~W~~~g--~~--~~~~--~~--------~~~~~~~~~~~-~~g~s~L~I~~v~~~d~G~Y~~C~a~n~ 273 (977)
+. +.+.|+|+. .. ++.. .. ...+++.+... ..+...|.|.+++.+|+|.|. |.+.|.
T Consensus 166 ~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~-C~a~n~ 239 (264)
T 2gjj_A 166 SFTGYFINWVKKNSGKSPEWIGHISSSYATSTYNQKFKNKAAFTVDTSSSTAFMQLNSLTSEDSADYY-CVRSGN 239 (264)
T ss_dssp CGGGSEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEE-EEEECS
T ss_pred ccCCeEEEEEEECCCCCcEEEEEEeccCcccccCcccCCceEEEEcCCCCEEEEEECcCCcccCEEEE-EEEecC
Confidence 64 799999974 22 1110 10 11346665532 234469999999999999999 999995
No 408
>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}
Probab=99.61 E-value=3.4e-15 Score=158.39 Aligned_cols=174 Identities=16% Similarity=0.171 Sum_probs=115.3
Q ss_pred CCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECC--eeC------C------------CCceEEe-----ccceE
Q psy574 99 KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLG--SAM------P------------EDRMSVL-----PSRSL 153 (977)
Q Consensus 99 ~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~--~~l------~------------~~~~~~~-----~~~~L 153 (977)
+|.+...|....+.+|++++|.|.+.+.+.+.+.|+|.. ... . .++.... .+.+|
T Consensus 2 s~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L 81 (259)
T 3omz_A 2 SSNLEGRTKSVIRQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRKNLRM 81 (259)
T ss_dssp ---------CEEEETTCCEEEECCC-----CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC--CCCEE
T ss_pred ccccccCCceeEecCCCcEEEEEEEccCCCcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecCCCCeEEE
Confidence 356667788889999999999999988888899999932 111 0 0011111 23469
Q ss_pred EEccCccCCCeEEEEEEEeCCe---eEEEEEEEEEee-----------------CCeEEecCCCcEEeeCCeEEEEEEEe
Q psy574 154 QLSDVRLEDAGEYVCEAENAVG---KISASATLTVQM-----------------APIVRERPSDLRLEVGRDAVFLCGIE 213 (977)
Q Consensus 154 ~I~~v~~~D~G~Y~C~a~n~~g---~~~~~~~L~V~~-----------------~p~~~~~p~~~~v~~G~~v~L~C~~~ 213 (977)
.|.+++.+|+|.|+|.+.|..+ .....+.|.|.. .+.+...|....+.+|++++|.|.+.
T Consensus 82 ~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~ 161 (259)
T 3omz_A 82 ILRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQKVTQAQSSVSMPVRKAVTLNCLYE 161 (259)
T ss_dssp EESSCCGGGCEEEEEEEECTTSSCEEECCCEEEEEEC------------------CEEECCCCCEEEETTCCEEECCEEE
T ss_pred EECCCCcccCEEEEEEEeeCCccccEECCCCEEEEecCCCCccccccccccccCCeeeEEeCCEEEEcCCCCEEEEEECC
Confidence 9999999999999999998765 344557788875 35667778888999999999999998
Q ss_pred cC-CCCeEEEEEcCe--ee--eec-----CCCccccEEEEEc-cCCceEEEEeecccCCCCeEEEEEEEcC
Q psy574 214 GS-PPPSTFWMLEGN--RS--LIY-----PGDRVDNIQAEIT-SDGMNLLKIQNVSRTAAPLIILCLGVNA 273 (977)
Q Consensus 214 g~-p~~~i~W~~~g~--~~--~~~-----~~~~~~~~~~~~~-~~g~s~L~I~~v~~~d~G~Y~~C~a~n~ 273 (977)
+. +.+.+.|+|++. .. ... .....+++.+... ..+...|+|.+++.+|+|.|. |.+.+.
T Consensus 162 ~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~-C~~~~~ 231 (259)
T 3omz_A 162 TSWWSYYIFWYKRLPSKEMIFLIRQGSDEQNAKSGRYSVNFKKAAKSVALTISALQLEDSAKYF-CALGES 231 (259)
T ss_dssp CCCSSCEEEEEEECTTCCEEEEEEEETTSCCCEETTEEECCBGGGTBCCEEESSCCGGGCSEEE-EEEESC
T ss_pred CccCCceEEEeeeCCCCCcEEEEEECCcCCcccCCeEEEEEcCcCCEEEEEECCCChhHCEEEE-EEEeCc
Confidence 75 788999999642 11 100 0112355655431 123357999999999999999 999753
No 409
>1uen_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, fibronectin type III, NG-CAM related cell adhesion molecule, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=99.60 E-value=2.5e-15 Score=139.78 Aligned_cols=111 Identities=22% Similarity=0.287 Sum_probs=96.4
Q ss_pred CCceEEeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCc--------ceEEEEecCCcCe
Q psy574 629 SNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNS--------ALINMTVSASTPT 700 (977)
Q Consensus 629 s~~~~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~--------~~~~~~~~~~~~~ 700 (977)
|..+.++|.+++|+.+|.++++...++++|.|+|++|+....||.|++|+|+|+..+.. ......+.++.++
T Consensus 2 S~~v~~~T~~~~P~~~P~~l~~~~~~~~sv~l~W~~p~~~~~~g~i~gY~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (125)
T 1uen_A 2 SSGSSGHSGEDLPMVAPGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSSKRNRRHIEKKILTFQGSKTH 81 (125)
T ss_dssp CCCCCCCSCCCCCCCCCSSCEEEEEETTEEEEECCCCCHHHHCSCEEEEEEEEEEESCCCCSTTCCCCEEEEEEESSCSE
T ss_pred CccEEEECCCCCCCCCCceeEEEecCCcEEEEEEcCCCchhcCceEeEEEEEEEECCCCcccccccccceEEEecCCccE
Confidence 45688999999998899999999999999999999996556789999999999875421 1234556778899
Q ss_pred EEecCCCCCceEEEEEEEEcCCCcCCCCCceEEeecCCC
Q psy574 701 LLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGP 739 (977)
Q Consensus 701 ~~l~~L~p~t~Y~~~V~A~~~~G~g~~S~~~~~~t~~~~ 739 (977)
++|.+|+|++.|.|+|+|+|.+|.|++|.++.++|....
T Consensus 82 ~~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~~~~ 120 (125)
T 1uen_A 82 GMLPGLEPFSHYTLNVRVVNGKGEGPASPDRVFNTPEGS 120 (125)
T ss_dssp EEEESCCSSCEEEEEEEEEESSCEEEECCCEEEECCCCC
T ss_pred EEeCCCCCCCEEEEEEEEecCCCCCCCCCCEEEECCCCC
Confidence 999999999999999999999999999999999998765
No 410
>4doh_R Interleukin-20 receptor subunit alpha; IL10 family cytokine receptor complex, alpha helical cytokin beta sandwhich receptor fold, signaling complex; HET: NAG; 2.80A {Homo sapiens}
Probab=99.60 E-value=2.2e-14 Score=147.01 Aligned_cols=187 Identities=11% Similarity=0.010 Sum_probs=143.3
Q ss_pred EEEEEeeEeCCCeEEEEEEecC--CCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCC--CCcEEEEEEEEeec
Q psy574 547 IELTEVKPMTSTSVKLTWEILN--TDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLA--HYSRYEFFLVPFFG 622 (977)
Q Consensus 547 ~~~l~~~~~~~tsv~lsW~~p~--~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~--p~t~Y~~~V~a~n~ 622 (977)
|+++++...+-..+ |+|+++. +.....|.|+|+..+ ...|...........+.+.|+++. ++..|.++|+|...
T Consensus 12 P~nv~~~s~n~~~i-L~W~p~~~~~~~~~~Y~Vqy~~~~-~~~W~~~~~C~~~~~~~Cdlt~~~~~~~~~Y~~RV~A~~g 89 (221)
T 4doh_R 12 PANITFLSINMKNV-LQWTPPEGLQGVKVTYTVQYFIYG-QKKWLNKSECRNINRTYCDLSAETSDYEHQYYARVRAIWG 89 (221)
T ss_dssp CEEEEEEEETTEEE-EEEECCCCSSCCCCEEEEEEEETT-SCCCEECGGGSSBSSSEEECTTTTCCSSCCEEEEEEEESS
T ss_pred CceeEEEEECCcEE-EEEcCCCCCCCCCeEEEEEEEECC-CCCceecccccCCCCCEEeCCCccccCCCCEEEEEEEEcC
Confidence 47999999888775 9999983 356889999999765 467876544444567889999975 56789999999998
Q ss_pred ceeCCCCCceEEeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCC--CCCee---------eeEEEEEEEecCCcceEE
Q psy574 623 SVDGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVG--THNGV---------IRTYQIIVGGGNNSALIN 691 (977)
Q Consensus 623 ~g~g~~s~~~~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~--~~ng~---------i~~Y~v~~~~~~~~~~~~ 691 (977)
.+.+.++....|.+......+||. +.+.. .+++|.|.|.+|... ..+|. ...|+|.|++++......
T Consensus 90 ~~~S~w~~~~~F~p~~~t~igPP~-v~v~~-~~~~l~V~~~~P~~~~~~~~~~~~s~~~i~~~l~Y~V~y~~~~~~~~~~ 167 (221)
T 4doh_R 90 TKCSKWAESGRFYPFLETQIGPPE-VALTT-DEKSISVVLTAPEKWKRNPEDLPVSMQQIYSNLKYNVSVLNTKSNRTWS 167 (221)
T ss_dssp SCBCCCEECCCBCHHHHCBCCCCE-EEEEC-CSSCEEEEEECCBCCCSSTTSCCCBHHHHSTTCEEEEEEEETTTTEEEE
T ss_pred CcccCCEecCceechhhCccCCCE-EEEEE-CCCEEEEEEeCCCcccccCCCCceEHHHhcCceEEEEEEEECCCCcEEE
Confidence 888888777777766555566885 88774 668999999998532 12341 468999999865333222
Q ss_pred EEecCCcCeEEecCCCCCceEEEEEEEEcC--CCcCCCCCceEEeecCCC
Q psy574 692 MTVSASTPTLLLTNLSAGIRYSVSLAATNR--AGTGPYSRPALLSLTSGP 739 (977)
Q Consensus 692 ~~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~--~G~g~~S~~~~~~t~~~~ 739 (977)
.. .....+.|.+|+|++.|.|+|+|++. .|.|.+|.++.++|.+..
T Consensus 168 ~~--~~~~~~~l~~L~p~t~Ycv~V~a~~~~~~~~g~~S~~~c~~T~~d~ 215 (221)
T 4doh_R 168 QC--VTNHTLVLTWLEPNTLYCVHVESFVPGPPRRAQPSEKQCARTLKDQ 215 (221)
T ss_dssp EE--ECSSEEEECSCCTTCEEEEEEEEECSSSCCCCCCCEEEEEECCCC-
T ss_pred Ee--ecCcEEEEecCCCCCcEEEEEEEEEcCCCCCCCCCCCEeEecCCCc
Confidence 22 24578999999999999999999985 799999999999987654
No 411
>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*
Probab=99.60 E-value=6.7e-15 Score=151.29 Aligned_cols=166 Identities=17% Similarity=0.237 Sum_probs=112.2
Q ss_pred ecccceEEeCCCcEEEEEECCCCCC--CCeEEEEeCC--EE---e-e----------cCCCceEEEec-----CcEEEEc
Q psy574 10 VQPKSQRVAAGDTALLECGPPRGHP--EPTLVWKKNG--HP---I-D----------FENSKRLRLVD-----GTNLAIQ 66 (977)
Q Consensus 10 ~~p~~~~v~~G~~v~L~C~~~~g~P--~~~v~W~k~g--~~---l-~----------~~~~~r~~~~~-----~g~L~I~ 66 (977)
.+|..+.+.+|++|+|.|.+ .+.| .+.|.|+|+. .. + . ....+|+.+.. +.+|.|.
T Consensus 5 ~qp~~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~ 83 (215)
T 1c5d_H 5 LESGPGLVQPSQTLSLTCTV-SGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMN 83 (215)
T ss_dssp EEECCCEECTTCCEEEEEEE-CSSCTTSCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEETTTTEEEEEES
T ss_pred EcCCCeeecCCCcEEEEEEE-CCCcCCCCeEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeCCCceEEEEEC
Confidence 35778999999999999998 5543 5789999852 21 1 0 01246777653 2379999
Q ss_pred CCCCCCCeEEEEEEEecCce--eeeEeEEEEEEc----CCeEEeCCCceEEeCCCeEEEEEEeccc-Cce-EEEEEECCe
Q psy574 67 DSRKTDDGRYQCVVKNVAGT--RESTDAVLRVLV----KPYIIRGPKDTTVSASSIIVFECSVGGD-AVL-TVHWKRLGS 138 (977)
Q Consensus 67 ~v~~~D~G~Y~C~a~n~~g~--~~s~~~~l~V~~----~P~~~~~p~~~~v~~G~~v~l~C~v~g~-p~~-~i~W~k~~~ 138 (977)
+++.+|+|.|.|.+.+..+. .....+.|.|.. +|.+...+....+.+|+.++|.|.+.|. |.+ .|.|++++.
T Consensus 84 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~ 163 (215)
T 1c5d_H 84 SLQTEDTAIYFCTREDGWNYFDYWGPGTMVTVSSAQTTAPSVYPLAPGCGDTTSSTVTLGCLVKGYFPEPVTVTWNSGAL 163 (215)
T ss_dssp SCCGGGCEEEEEEECCSSSCSCCBCCCEEEEECSSCCBCCCEEEECCCSSCCCCSSEEEEEEEEEEBSSCCEEEEGGGTT
T ss_pred CCCcccCEEEEEEEecCCcccceEcCCEEEEecCCCCCCCeEEeccCChhhccCCcEEEEEEEeeeEcCCcEEEEccCCc
Confidence 99999999999999886422 122346788873 4555543323345789999999999876 877 999999987
Q ss_pred eCCCCce-EEeccceEE----EccCccCCCeEEEEEEEeCCeeE
Q psy574 139 AMPEDRM-SVLPSRSLQ----LSDVRLEDAGEYVCEAENAVGKI 177 (977)
Q Consensus 139 ~l~~~~~-~~~~~~~L~----I~~v~~~D~G~Y~C~a~n~~g~~ 177 (977)
.+..... ....++.+. +.....+| |.|+|.|.|..+..
T Consensus 164 ~~~~~~~~~~~~~g~~~~~s~L~~~~~~~-g~ytC~v~n~~~~~ 206 (215)
T 1c5d_H 164 SSDVHTFPAVLQSGLYTLTSSVTSSTWPS-QTVTCNVAHPASST 206 (215)
T ss_dssp CCSCCBCCCEEETTEEEEEEEEEESSTTT-SCCEEEEEEGGGTE
T ss_pred cCceEecCcccCCCCEEEEEEEecccCCC-CeEEEEEEeCCCCc
Confidence 5432110 011112211 22444456 99999999988764
No 412
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49}
Probab=99.60 E-value=1.1e-13 Score=139.19 Aligned_cols=237 Identities=18% Similarity=0.204 Sum_probs=165.6
Q ss_pred eEEeCCCceEEeCCCeEEEEEEe-cccC---ceEEEEEECCeeCCCCceEEeccceEEEccCccCCCeEEEEEEEeCCee
Q psy574 101 YIIRGPKDTTVSASSIIVFECSV-GGDA---VLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGK 176 (977)
Q Consensus 101 ~~~~~p~~~~v~~G~~v~l~C~v-~g~p---~~~i~W~k~~~~l~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~ 176 (977)
.+...|....+..|+.++|.|.+ .|.| ...++|+||+..+.. ....|.|..+...|+|.|+|.+.+..|.
T Consensus 4 tVs~~P~~~~i~~GdsVTLTatVaGGkP~pspyTYqWyKDG~~IsG------aT~tLti~s~t~sdSG~YqCvVTDa~Gc 77 (304)
T 3shs_A 4 TVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHEN------NTATLTVADATSENAGSYKVTVQDTDTM 77 (304)
T ss_dssp EEEEEESCSSBCTTCCEEEEEEEEESSSCCCCEEEEEEETTEECSC------CSSEEEESSCCGGGCEEEEEEEEETTTC
T ss_pred EEEeCCCCccccCCCCEEEEEEecCCCCCCCCceEEEEECCccccC------CcceEEeeeccccCCeEEEEEEEECCCC
Confidence 34455777788999999999998 5566 568999999988764 3457999999999999999999998887
Q ss_pred EEEEEEEEEeeC--CeEEe-cCCCcEEeeCCeEEEEEEE--ec-CC-----CCeEEEEEcCeeeeecCCCccccEEEEEc
Q psy574 177 ISASATLTVQMA--PIVRE-RPSDLRLEVGRDAVFLCGI--EG-SP-----PPSTFWMLEGNRSLIYPGDRVDNIQAEIT 245 (977)
Q Consensus 177 ~~~~~~L~V~~~--p~~~~-~p~~~~v~~G~~v~L~C~~--~g-~p-----~~~i~W~~~g~~~~~~~~~~~~~~~~~~~ 245 (977)
...+..+.|... +.+.. .|....+..|..+.|.+.+ .| .+ ..++.|+|++..+.
T Consensus 78 s~tSs~VtVT~~a~l~i~it~P~s~~vssg~sVtL~aTVt~SGGtppA~~~~yTYQWyKngt~Is--------------- 142 (304)
T 3shs_A 78 TSVESEVFLMEEAELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVID--------------- 142 (304)
T ss_dssp CEEECCCEEECBCCEEEEESSCSEEEECSSCCEEEEEEEEETTSCCSSTTCCCEEEEEETTEEEE---------------
T ss_pred eeeeeeEEEeccCceeEEecCCCceeccCCCeEEEEEEEeccCCCCcccCCCceeEEeeCCeEcc---------------
Confidence 544444444432 23322 3555566678899999987 43 44 45899999997652
Q ss_pred cCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEECCCCCCCCeEEeCCCceeecCCCcEEEEEEEcc------
Q psy574 246 SDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG------ 319 (977)
Q Consensus 246 ~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~~~~~~~pp~i~~~p~~~~v~~g~~~~L~C~~~~------ 319 (977)
+...|++......++|.|. |.+.|..+..-.++.+.|.... .++-..-.....+..|+.+.|.-.+..
T Consensus 143 --gAq~lT~sS~TateaG~Yt-V~VTn~~~~c~~s~~~~i~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (304)
T 3shs_A 143 --TTQDITIQEFTADKNGVYT-VKVWGESEDSAASASTKIMLAT---MNVDQDVVESKTVALGNEISLNYVVSEDIVGDS 216 (304)
T ss_dssp --SSSEEEECSCCGGGCEEEE-EEEESSSGGGCEEEEEEEEECE---EEEEECCCSEEEEETTSCEEECCEEEEECCSCC
T ss_pred --CccccceeeEEecCCeEEE-EEEEcCCCCcccccceEEEEEc---cccchhheEeehhhcCcEEEEEEEEeeccccCC
Confidence 3337888888899999999 9999998755444433333210 112122233456778888888666553
Q ss_pred --Cc----eEEEEEC--CEEc----CC-----CCcEEEecCceEEEeccCCCCCeEEEEEEE
Q psy574 320 --EG----SVQWWRG--EREV----GS-----GPRVNVTGDGSLVLTDVTKEDSGEYTCVVK 364 (977)
Q Consensus 320 --~p----~i~W~~~--g~~l----~~-----~~~~~~~~~~sl~I~~v~~~d~G~Y~C~a~ 364 (977)
.| .+.|+.. |... .. -..+.+.+++.|.-......|...|.|.+.
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (304)
T 3shs_A 217 SGMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSITPDGHLFKESATYDDTAKFWCVAK 278 (304)
T ss_dssp TTCCEEEEEEEEEEECTTCCSCEEEESSSEECGGGEEECTTSCEEESSCCGGGCEEEEEEEE
T ss_pred CCCCceEEEEEEEEeecCccCchhhhhhhhhhhccceeCCCcceeecccccccchheeeHHH
Confidence 22 4668643 3211 11 156778889999888899999999999986
No 413
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4
Probab=99.60 E-value=5.4e-15 Score=157.59 Aligned_cols=255 Identities=16% Similarity=0.202 Sum_probs=110.4
Q ss_pred eCCCceEEeCCCeEEEEEEecccCceEEEEEEC-CeeCC-CCceEEeccceEEEccCccCCCeEEEEEEEeCCeeEEEEE
Q psy574 104 RGPKDTTVSASSIIVFECSVGGDAVLTVHWKRL-GSAMP-EDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASA 181 (977)
Q Consensus 104 ~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~-~~~l~-~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~ 181 (977)
..|.+..|.+|+++.|.|.+.-.....+.|.-. ++... ... .....|.|.++..+ |.|+|.+.......++.+
T Consensus 4 v~P~~~~V~~G~sv~l~Cs~~c~~p~~~~~~t~l~~~~~~~~g---~~~~~~~l~~v~~~--~~y~C~~~~~~~~~~~~v 78 (291)
T 1mq8_A 4 VSPSKVILPRGGSVLVTCSTSCDQPKLLGIETPLPKKELLLPG---NNRKVYELSNVQED--SQPMCYSNCPDGQSTAKT 78 (291)
T ss_dssp EECSEEEECTTCEEEEEEEECCSSCSEEEEECSSCCCCCCCSC---SSEEEEEEESCCSC--CCCEEEEECSSCEEEEEC
T ss_pred EeCCccEEcCCCeEEEEEeCCCCCCccceEEecCCCcccccCC---CceEEEEEEecccC--CeEEEEEEcCCccEEEEE
Confidence 346677899999999999996333334888642 11111 110 02235788888843 469999976544677888
Q ss_pred EEEEeeCCeE-EecCCCcEEeeCCeEEEEEEEecCCCC---eEEEEEcCeeeeecCCCccccEEEEEccCCceEEEEeec
Q psy574 182 TLTVQMAPIV-RERPSDLRLEVGRDAVFLCGIEGSPPP---STFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNV 257 (977)
Q Consensus 182 ~L~V~~~p~~-~~~p~~~~v~~G~~v~L~C~~~g~p~~---~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~s~L~I~~v 257 (977)
.|.|..+|.. .+.+....+.+|+.++|.|.+.+..+. +|.|+|++..+...... . .....+|.+...
T Consensus 79 ~l~V~~~P~~v~I~~~~~~~~~G~~~~LtC~v~g~~P~~~l~itW~kg~~~l~~~~~~--~-------~~~~~~l~~~~~ 149 (291)
T 1mq8_A 79 FLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAV--G-------EPAEVTTTVLVR 149 (291)
T ss_dssp EEEECBCCSCCCBCCCCSBCCSSCCCEEEEEECCCBSTTTEEEEEESSSSEEEEEECC--B-------TTEEEEEECCCS
T ss_pred EEEEecCCCCCEEecCCccccCCCCEEEEEEecCccCCCCcEEEEEECCEEeecccCC--C-------CCceEEEEeeee
Confidence 9999977753 333444568899999999999875443 58999999776422100 0 012236777766
Q ss_pred ccCCCCeEEEEEEEcCCCc--------eeEEEEEEEECCCCCCCCeEEeCCCceeecCCCcEEEEEEEcc-Cc----eEE
Q psy574 258 SRTAAPLIILCLGVNAAGS--------DLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG-EG----SVQ 324 (977)
Q Consensus 258 ~~~d~G~Y~~C~a~n~~g~--------~~~~~~l~V~~~~~~~pp~i~~~p~~~~v~~g~~~~L~C~~~~-~p----~i~ 324 (977)
..+|.+.|+ |+|.|..+. .+....|.|...+.. .+.+. .| ..+..|+.++|.|.+.+ .| .++
T Consensus 150 ~~D~g~~~~-C~A~~~l~~~g~~l~~~~s~~~~L~V~~~P~~-~~~~~-~p--~~l~eG~~v~l~C~~~g~~P~~~~~v~ 224 (291)
T 1mq8_A 150 RDHHGANFS-CRTELDLRPQGLELFENTSAPYQLQTFVLPAT-PPQLV-SP--RVLEVDTQGTVVCSLDGLFPVSEAQVH 224 (291)
T ss_dssp SSCSSCEEE-EEEEEECGGGTSCEEEECCCCEECBC--------------------------------------------
T ss_pred eccCCceEE-EEEEecCCccCCccccccccceEEEEEecCCC-Cceec-CC--cCccCCCeEEEEEEcCCCCCCcccEEE
Confidence 667777999 999987652 234456777763111 11221 12 25778999999999999 33 599
Q ss_pred EEECCEEcCCCCcEEEecCceEEEecc---CCC--CCeEEEEEEEcCCCceEEEEEEEEEC
Q psy574 325 WWRGEREVGSGPRVNVTGDGSLVLTDV---TKE--DSGEYTCVVKSPHGSASWSASLRFES 380 (977)
Q Consensus 325 W~~~g~~l~~~~~~~~~~~~sl~I~~v---~~~--d~G~Y~C~a~n~~G~~~~s~~l~v~~ 380 (977)
|+++|..+.... . .....+.+... ... +.+.|+|.|.+.....+....|.|..
T Consensus 225 w~~~g~~l~~~~--~-~~g~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~l~v~~ 282 (291)
T 1mq8_A 225 LALGDQRLNPTV--T-YGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYS 282 (291)
T ss_dssp -------------------------------------------------------------
T ss_pred EEECCEecCcee--e-ecCCeEEEEEecceeEcCCCCEEEEEEEEeCCcceEEEEEEEEEc
Confidence 999999876431 1 12223333333 233 35677788887544455566666654
No 414
>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Probab=99.60 E-value=9.1e-16 Score=160.02 Aligned_cols=175 Identities=20% Similarity=0.245 Sum_probs=121.4
Q ss_pred CeEEeCCCceEEeCCCeEEEEEEecccC-ce-EEEEEECC--eeC-------------CCCceEEe---ccceEEEccCc
Q psy574 100 PYIIRGPKDTTVSASSIIVFECSVGGDA-VL-TVHWKRLG--SAM-------------PEDRMSVL---PSRSLQLSDVR 159 (977)
Q Consensus 100 P~~~~~p~~~~v~~G~~v~l~C~v~g~p-~~-~i~W~k~~--~~l-------------~~~~~~~~---~~~~L~I~~v~ 159 (977)
+.+.. |....+.+|++++|.|.+.+.+ .+ .|.|+|++ ..+ ..+++... .+.+|.|.+++
T Consensus 21 ~~v~~-p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~ 99 (234)
T 2j6e_L 21 SVLTQ-PPSASGTPGQRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSKSGTSASLAISGLR 99 (234)
T ss_dssp CCCBC-CSCCCBCTTCEEEEEEECCTTTTTTSCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEEETTEEEEEEESCC
T ss_pred cEEeC-CCcEEeeCCCcEEEEEEecCCCCCCCeEEEEEecCCCCcEEEEECccccCCCccccEEEEecCCeEEEEECCCC
Confidence 33444 7788899999999999997754 34 69999973 221 12455543 23489999999
Q ss_pred cCCCeEEEEEEEeCCe---eEEEEEEEEEe----eCCeEEecCCCcEEeeCCeEEEEEEEecCCCC--eEEEEEcCeeee
Q psy574 160 LEDAGEYVCEAENAVG---KISASATLTVQ----MAPIVRERPSDLRLEVGRDAVFLCGIEGSPPP--STFWMLEGNRSL 230 (977)
Q Consensus 160 ~~D~G~Y~C~a~n~~g---~~~~~~~L~V~----~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~~--~i~W~~~g~~~~ 230 (977)
.+|+|.|+|.+.|..+ .....+.|.|. .+|.+...+....+.+|+.++|.|.+.+.+++ .+.|+|+|..+.
T Consensus 100 ~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~ 179 (234)
T 2j6e_L 100 SEDEADYYCATWDDSLSAVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFFPGAVTVAWKADGAPVK 179 (234)
T ss_dssp STTCSEEEEEEEETTTTEEEECCCBCCCBCCCCCCCCCCCEECCCHHHHTTSCCCEEECCCBCSSCCCEEEEEETTEECC
T ss_pred HHHCEEEEEEEEcCCcceeEecCCEEEEEecCCCCCCcccccCCChhHhcCCceEEEEEEEEEcCCceEEEEEECCEECC
Confidence 9999999999999877 23345677774 45555554444444468899999999886443 899999998763
Q ss_pred ecCCCccccEEEEEccCC----ceEEEEeecccCCCCeEEEEEEEcCCCceeEE
Q psy574 231 IYPGDRVDNIQAEITSDG----MNLLKIQNVSRTAAPLIILCLGVNAAGSDLAR 280 (977)
Q Consensus 231 ~~~~~~~~~~~~~~~~~g----~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~ 280 (977)
.. ..........++ .+.|.|..+..+|.|.|+ |.|.|..+....+
T Consensus 180 ~~----~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~-C~a~n~~~~~~~~ 228 (234)
T 2j6e_L 180 AG----VETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYS-CQVTHEGSTVEKT 228 (234)
T ss_dssp SS----EEECCCCCCTTSCCBCCEEECCCGGGTTTSCCEE-EEEEBTTBCCCEE
T ss_pred CC----ccccCceECCCCCEEEEEEEEECHHHcCCCCeEE-EEEEeCCCceEEe
Confidence 11 000000001111 247999999999999999 9999988764443
No 415
>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H
Probab=99.60 E-value=1.8e-14 Score=148.93 Aligned_cols=169 Identities=16% Similarity=0.243 Sum_probs=119.0
Q ss_pred CCceEEeCCCeEEEEEEecccC--ceEEEEEECC--ee---C---------------CCCceEEec-----cceEEEccC
Q psy574 106 PKDTTVSASSIIVFECSVGGDA--VLTVHWKRLG--SA---M---------------PEDRMSVLP-----SRSLQLSDV 158 (977)
Q Consensus 106 p~~~~v~~G~~v~l~C~v~g~p--~~~i~W~k~~--~~---l---------------~~~~~~~~~-----~~~L~I~~v 158 (977)
|....+.+|++++|.|.+.+.+ .+.+.|+|.. .. + ..+|+.+.. +.+|.|.++
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v 86 (223)
T 1dee_B 7 SGGGVVQPGKSLRLSCAASGFTFSGYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNSKNTLYLQMNSL 86 (223)
T ss_dssp ECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEETTTTEEEEEECSC
T ss_pred CCCEEEcCCCcEEEEEEecCcccCCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecCCCCEEEEEECCC
Confidence 4567899999999999997765 4789999953 11 1 124665543 248999999
Q ss_pred ccCCCeEEEEEEEeCCe------eEEEEEEEEEee----CCeEEecCCCcEEeeCCeEEEEEEEecC-CCC-eEEEEE-c
Q psy574 159 RLEDAGEYVCEAENAVG------KISASATLTVQM----APIVRERPSDLRLEVGRDAVFLCGIEGS-PPP-STFWML-E 225 (977)
Q Consensus 159 ~~~D~G~Y~C~a~n~~g------~~~~~~~L~V~~----~p~~~~~p~~~~v~~G~~v~L~C~~~g~-p~~-~i~W~~-~ 225 (977)
+.+|+|.|.|.+.+..+ .....+.|.|.. +|.+...+....+.+|+.++|.|.+.+. |.+ .+.|++ +
T Consensus 87 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~ 166 (223)
T 1dee_B 87 RAEDTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSSGSASAPTLFPLVSCENSNPSSTVAVGCLAQDFLPDSITFSWKYKN 166 (223)
T ss_dssp CGGGCEEEEEEEESSSSTTCCEEEECCCEEEEECSSCCBCCEEEEEECTTCCCSSSEEEEEEEEEEEBSSCCEEEEEETT
T ss_pred CHHHCEEEEEEEeccccCcccceeecCcEEEEEccCCCCCCEEEEecCCcccCCCCcEEEEEEEEEEeCCCeEEEeEccC
Confidence 99999999999998652 122446788873 4555533223345789999999999886 776 999999 8
Q ss_pred Ceeeee---cCC-CccccEEEEEccCCceEEEEeeccc--CCCCeEEEEEEEcCCCceeEEE
Q psy574 226 GNRSLI---YPG-DRVDNIQAEITSDGMNLLKIQNVSR--TAAPLIILCLGVNAAGSDLARA 281 (977)
Q Consensus 226 g~~~~~---~~~-~~~~~~~~~~~~~g~s~L~I~~v~~--~d~G~Y~~C~a~n~~g~~~~~~ 281 (977)
|..+.. ... ...+.+.+. +.|.|..... +|.|.|+ |.|.|..+......
T Consensus 167 g~~l~~~~~~~~~~~~~~~~~~------s~L~i~~~~~~~~d~g~y~-C~v~n~~~~~~~~~ 221 (223)
T 1dee_B 167 NSDISSTRGFPSVLRGGKYAAT------SQVLLPSKDVAQGTNEHVV-CKVQHPNGNKEKDV 221 (223)
T ss_dssp SCBCSCEEECCCEEETTEEEEE------EEEEEECTTTTSTTCCEEE-EEEECTTCCEEEEE
T ss_pred CCccceeEECCccccCCeEEEE------EEEEEcHHHhccCCCCEEE-EEEEeCCCCCcccc
Confidence 876531 000 011233332 3788888876 7899999 99999988765443
No 416
>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*
Probab=99.59 E-value=1.3e-14 Score=149.65 Aligned_cols=165 Identities=18% Similarity=0.212 Sum_probs=119.6
Q ss_pred CCceEEeCCCeEEEEEEecccC--ceEEEEEECC--ee---C---------------CCCceEEec-----cceEEEccC
Q psy574 106 PKDTTVSASSIIVFECSVGGDA--VLTVHWKRLG--SA---M---------------PEDRMSVLP-----SRSLQLSDV 158 (977)
Q Consensus 106 p~~~~v~~G~~v~l~C~v~g~p--~~~i~W~k~~--~~---l---------------~~~~~~~~~-----~~~L~I~~v 158 (977)
|....+.+|++++|.|.+.+.+ .+.+.|+|.. .. + ..+|+.+.. +.+|.|.++
T Consensus 7 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v 86 (220)
T 2fbj_H 7 SGGGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKV 86 (220)
T ss_dssp ECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSC
T ss_pred CCCeEecCCCcEEEEEEecCccCCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeCCCCEEEEEECCC
Confidence 4567899999999999998765 5789999863 11 1 124666553 248999999
Q ss_pred ccCCCeEEEEEEEeCCee---EEEEEEEEEee----CCeEEecCCCcEEeeCCeEEEEEEEecC-CC--CeEEEEEcCee
Q psy574 159 RLEDAGEYVCEAENAVGK---ISASATLTVQM----APIVRERPSDLRLEVGRDAVFLCGIEGS-PP--PSTFWMLEGNR 228 (977)
Q Consensus 159 ~~~D~G~Y~C~a~n~~g~---~~~~~~L~V~~----~p~~~~~p~~~~v~~G~~v~L~C~~~g~-p~--~~i~W~~~g~~ 228 (977)
+.+|+|.|.|.+.+..+. ....+.|.|.. +|.+...+ ...+.+|+.++|.|.+.+. |. +.+.|++++..
T Consensus 87 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~-~~~~~~g~~v~L~C~~~g~~P~~~~~v~W~~~~~~ 165 (220)
T 2fbj_H 87 RSEDTALYYCARLHYYGYNAYWGQGTLVTVSAESARNPTIYPLT-LPPALSSDPVIIGCLIHDYFPSGTMNVTWGKSGKD 165 (220)
T ss_dssp CGGGCEEEEEEEEETTTEEEEECCCEEEEECSSCCBCCEEEEEC-CCSSSCCSSEEEEEEEEEEBSCCCEEEEESCCCSS
T ss_pred ChhhCEEEEEEEeccccccceecCCEEEEecCCCCCCCEEEEee-cccccCCCcEEEEEEEEeEECCCcEEEEEecCCEe
Confidence 999999999999987543 22346788873 45665554 4456789999999999886 65 68999999876
Q ss_pred eeecCC----CccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCcee
Q psy574 229 SLIYPG----DRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDL 278 (977)
Q Consensus 229 ~~~~~~----~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~ 278 (977)
+..... ...+.+.+. +.|.|......|.|.|+ |.|.|..+...
T Consensus 166 ~~~~~~~~~~~~~g~~~~~------s~L~i~~~~~~d~g~yt-C~v~n~~~~~~ 212 (220)
T 2fbj_H 166 ITTVNFPPALASGGRYTMS------NQLTLPAVECPEGESVK-CSVQHDSNPVQ 212 (220)
T ss_dssp CEEEECCCEECSSSCEEEE------EEEEECGGGSCTTCEEE-EEEEETTSCCE
T ss_pred cceEecCceECCCCCEEEE------EEEEECHHHcCCCCeEE-EEEEcCCCceE
Confidence 421100 011223322 26899999999999999 99999988754
No 417
>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}
Probab=99.59 E-value=1.2e-14 Score=156.89 Aligned_cols=181 Identities=17% Similarity=0.264 Sum_probs=128.5
Q ss_pred CCCceEEeCCCeEEEEEEecccC--ceEEEEEECC--eeC------------------CCCceEEec-----cceEEEcc
Q psy574 105 GPKDTTVSASSIIVFECSVGGDA--VLTVHWKRLG--SAM------------------PEDRMSVLP-----SRSLQLSD 157 (977)
Q Consensus 105 ~p~~~~v~~G~~v~l~C~v~g~p--~~~i~W~k~~--~~l------------------~~~~~~~~~-----~~~L~I~~ 157 (977)
.|....+.+|++++|.|.+.+.+ .+.+.|+|+. ..+ ..+|+.+.. ..+|.|.+
T Consensus 28 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~ 107 (291)
T 2gki_A 28 QSGPELVKPGASVKMSCKASGYTFTSYVMHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATLTSDKSSSTAYMELSS 107 (291)
T ss_dssp ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGBTTBCEEEEGGGTEEEEEECS
T ss_pred cCCcEEecCCCCEEEEEeccCCcccccEEEEEEECCCCCcEEEEEEecCCCccccCcccCCCEEEEEeCCCCEEEEEECc
Confidence 35577899999999999998766 5789999963 111 024444432 35799999
Q ss_pred CccCCCeEEEEEEEeCC-e--e--EEEEEEEEEee----------------CCeEEecCCCcEEeeCCeEEEEEEEecCC
Q psy574 158 VRLEDAGEYVCEAENAV-G--K--ISASATLTVQM----------------APIVRERPSDLRLEVGRDAVFLCGIEGSP 216 (977)
Q Consensus 158 v~~~D~G~Y~C~a~n~~-g--~--~~~~~~L~V~~----------------~p~~~~~p~~~~v~~G~~v~L~C~~~g~p 216 (977)
++.+|+|.|+|.+.|.. | . ....+.|.|.. ++.+...|....+.+|++++|.|.+.+.+
T Consensus 108 v~~~DsG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~ 187 (291)
T 2gki_A 108 LTSEDSAVYYCARGAYKRGYAMDYWGQGTSVTVSSRGGGGSGGGGSGGGGSDLVMSQSPSSLAVSAGEKVTMSCKSSQSL 187 (291)
T ss_dssp CCGGGCEEEEEEEECGGGTTCEEEECCCEEEEECC----------------CCCEECSCSEEEEETTSCEEEEEEESSCC
T ss_pred CCHHHCEEEEEEEeccccccccceeCCCcEEEEecCCccccccccCCCCCccceEEcCCCEEEEcCCCcEEEEEEcCCcc
Confidence 99999999999999874 1 1 22345788776 33455557777899999999999999887
Q ss_pred CC------eEEEEEcC--ee--eeecCC-----CccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCcee-EE
Q psy574 217 PP------STFWMLEG--NR--SLIYPG-----DRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDL-AR 280 (977)
Q Consensus 217 ~~------~i~W~~~g--~~--~~~~~~-----~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~-~~ 280 (977)
.+ .+.|+|+. .. ...... ....++..... .....|.|.+++.+|+|.|+ |.|.|...... .-
T Consensus 188 ~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~-~~~~~L~I~~v~~~DsG~Y~-C~a~~~~~~~fg~g 265 (291)
T 2gki_A 188 FNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGS-GTDFTLTISSVQAEDLAVYY-CKQSYYHMYTFGSG 265 (291)
T ss_dssp EETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE-TTEEEEEESSCCGGGCEEEE-EEEEETTEEEECCC
T ss_pred ccccccceeEEEEEECCCCCcEEEEEEcccCCCCcCCCEEEEec-CCEEEEEECCCCHHHCEEEE-EEEccCCceEEcCC
Confidence 75 89999973 21 111110 11456766542 34468999999999999999 99998654332 23
Q ss_pred EEEEEEC
Q psy574 281 ASLTVSG 287 (977)
Q Consensus 281 ~~l~V~~ 287 (977)
..|.|+.
T Consensus 266 t~l~v~~ 272 (291)
T 2gki_A 266 TKLEIKH 272 (291)
T ss_dssp EEEEEEC
T ss_pred EEEEEEe
Confidence 4677776
No 418
>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*
Probab=99.59 E-value=7.4e-15 Score=152.17 Aligned_cols=164 Identities=19% Similarity=0.287 Sum_probs=116.2
Q ss_pred CCceEEeCCCeEEEEEEecccC--ceEEEEEECC--eeC------------------CCCceEEec-----cceEEEccC
Q psy574 106 PKDTTVSASSIIVFECSVGGDA--VLTVHWKRLG--SAM------------------PEDRMSVLP-----SRSLQLSDV 158 (977)
Q Consensus 106 p~~~~v~~G~~v~l~C~v~g~p--~~~i~W~k~~--~~l------------------~~~~~~~~~-----~~~L~I~~v 158 (977)
|....+.+|++++|.|.+.+.+ .+.+.|+|+. ..+ ..+|+.+.. +.+|.|.++
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v 86 (225)
T 1op3_H 7 SGGGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKM 86 (225)
T ss_dssp ECCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred CCCeEecCCCCEEEEEEecCcccCCceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecCCCCEEEEEECCC
Confidence 4567889999999999998766 6789999863 211 124666543 358999999
Q ss_pred ccCCCeEEEEEEEeCCe-----e---EEEEEEEEEee----CCeEEecCCCcEEeeCCeEEEEEEEecC-CCC-eEEEEE
Q psy574 159 RLEDAGEYVCEAENAVG-----K---ISASATLTVQM----APIVRERPSDLRLEVGRDAVFLCGIEGS-PPP-STFWML 224 (977)
Q Consensus 159 ~~~D~G~Y~C~a~n~~g-----~---~~~~~~L~V~~----~p~~~~~p~~~~v~~G~~v~L~C~~~g~-p~~-~i~W~~ 224 (977)
+.+|+|.|+|.+.+..+ . ....+.|.|.. +|.+...+....+.+|+.++|.|.+.+. |.+ .+.|++
T Consensus 87 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~ 166 (225)
T 1op3_H 87 RVEDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNS 166 (225)
T ss_dssp CGGGCEEEEEEEECCSSCCSSCCEEEECCCEEEEEESCSCBCCEEEEECCCTTCCCCCEEEEEEEEEEEBSSCCEEECCT
T ss_pred ChhhCEEEEEEEecCCCccccccceeecCCEEEecccCCCcCCeEEEecccccccCCCcEEEEEEEEeEECCCeEEEEec
Confidence 99999999999998754 1 22356788874 3555443222235689999999999886 766 999999
Q ss_pred cCeeeeec--CC--CccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCce
Q psy574 225 EGNRSLIY--PG--DRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSD 277 (977)
Q Consensus 225 ~g~~~~~~--~~--~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~ 277 (977)
++..+... .. ...+.+... +.|.|..+..+| |.|+ |.|.|..+..
T Consensus 167 ~~~~~~~~~~~~~~~~~g~~~~~------s~L~i~~~~~~~-g~Y~-C~a~n~~~~~ 215 (225)
T 1op3_H 167 GALTSGVHTFPAVLQSSGLYSLS------SVVTVPSSSLGT-QTYI-CNVNHKPSNT 215 (225)
T ss_dssp TSCCTTCEECCCEECTTSCEEEE------EEEEEEGGGTTC-CCCC-EEEEEGGGTE
T ss_pred CCCcCCeEecCceeCCCCCEEEE------EEEEEechhcCC-CcEE-EEEEcCCCCc
Confidence 98652110 00 012233222 379999998888 9999 9999976654
No 419
>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E
Probab=99.59 E-value=3.2e-15 Score=157.75 Aligned_cols=165 Identities=15% Similarity=0.260 Sum_probs=101.8
Q ss_pred ecccceEEeCCCcEEEEEECCCCCC--CCeEEEEeCC--EEee---------------cCCCceEEEec-----CcEEEE
Q psy574 10 VQPKSQRVAAGDTALLECGPPRGHP--EPTLVWKKNG--HPID---------------FENSKRLRLVD-----GTNLAI 65 (977)
Q Consensus 10 ~~p~~~~v~~G~~v~L~C~~~~g~P--~~~v~W~k~g--~~l~---------------~~~~~r~~~~~-----~g~L~I 65 (977)
.+|..+.+.+|++|+|.|.+ .+.+ .+.|.|+|+. ..+. ....+|+.+.. +.+|.|
T Consensus 5 ~qp~~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I 83 (257)
T 3bn9_D 5 VQSGGGLVKPGGSLRLSCAA-SGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQM 83 (257)
T ss_dssp EEECCEEECTTCEEEEEEEE-ESSCGGGCCEEEEEECTTSCEEEEEEECSSSCCEEECGGGTTTEEEEEETTTTEEEEEE
T ss_pred EccCCEEEcCCCcEEEEEEe-ccccCCCceEEEEEECCCCCeEEEEEEecCCCceecCcccCCceEEEecCCCCEEEEEE
Confidence 45678899999999999998 5554 5789999843 2110 11245777653 247999
Q ss_pred cCCCCCCCeEEEEEEEecCc----------e--eeeEeEEEEEEc----CCeEEeCCCceEEeCCCeEEEEEEeccc-Cc
Q psy574 66 QDSRKTDDGRYQCVVKNVAG----------T--RESTDAVLRVLV----KPYIIRGPKDTTVSASSIIVFECSVGGD-AV 128 (977)
Q Consensus 66 ~~v~~~D~G~Y~C~a~n~~g----------~--~~s~~~~l~V~~----~P~~~~~p~~~~v~~G~~v~l~C~v~g~-p~ 128 (977)
.+++.+|+|.|.|.+.+..| . .....+.|.|.. +|.+...+....+.+|+.++|.|.+.|. |.
T Consensus 84 ~~v~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~~~~~~~t~L~V~~~~~~~P~v~~~~p~~~~~~g~~v~L~C~~~g~~P~ 163 (257)
T 3bn9_D 84 SSLRAEDTAVYYCARPYLTYPQRRGPQNVSPFDNWGQGTMVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPE 163 (257)
T ss_dssp ESCCGGGCEEEEEEEECCSSTTSCCCCTTCCEEEECCCEEEEECSSCCBCCEECCCCC-----------CCCEEEEEBSS
T ss_pred CCCChhhCEEEEEEEecCCCcccccccccceeeeeCCcEEEEecCCCCcCCcEEEecCcccccCCCcEEEEEEEeeEECC
Confidence 99999999999999998754 1 112345788874 4655543333346789999999999875 77
Q ss_pred e-EEEEEECCeeCCCC--ceEEec------cceEEEccCccCCCeEEEEEEEeCCee
Q psy574 129 L-TVHWKRLGSAMPED--RMSVLP------SRSLQLSDVRLEDAGEYVCEAENAVGK 176 (977)
Q Consensus 129 ~-~i~W~k~~~~l~~~--~~~~~~------~~~L~I~~v~~~D~G~Y~C~a~n~~g~ 176 (977)
+ .|.|+|++..+... ...... ...|.|.++..+| |.|+|.|.|....
T Consensus 164 pi~v~W~k~g~~~~~~~~~~~~~~~g~y~~~s~L~I~~~~~~~-g~YtC~v~n~~~~ 219 (257)
T 3bn9_D 164 PVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSN 219 (257)
T ss_dssp CCEEEETTTTCCSSCEECCCEECTTSCEEEEEECCCC--------CEEEEEEEGGGT
T ss_pred CcEEEEeeCCCcCCcEecCCeEcCCCCEEEEEEEEEcccccCC-CeEEEEEEecCCC
Confidence 7 99999998764311 001111 2357788887778 9999999996543
No 420
>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H
Probab=99.59 E-value=7.7e-15 Score=155.04 Aligned_cols=174 Identities=16% Similarity=0.253 Sum_probs=120.6
Q ss_pred CCCceEEeCCCeEEEEEEecc--cCceEEEEEECCe--e---C---------------CCCceEEecc-----ceEEEcc
Q psy574 105 GPKDTTVSASSIIVFECSVGG--DAVLTVHWKRLGS--A---M---------------PEDRMSVLPS-----RSLQLSD 157 (977)
Q Consensus 105 ~p~~~~v~~G~~v~l~C~v~g--~p~~~i~W~k~~~--~---l---------------~~~~~~~~~~-----~~L~I~~ 157 (977)
.|....+.+|++++|.|.+.+ .+...+.|+|... . + ..+|+.+..+ .+|.|.+
T Consensus 6 ~p~~v~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~ 85 (253)
T 3liz_H 6 ESGGGLVQPGGSLKLSCAASGFTFSSFAMSWGRQTPDKRLELVATINSNGASTYYPDTVKGRFTISRDNAKNTLFLQMSS 85 (253)
T ss_dssp EECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEECCTTTTTTCEEEEEGGGTEEEEEECS
T ss_pred cCCCEEECCCCcEEEEEEeeCccccCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeCCCCEEEEEECC
Confidence 345678999999999999976 3456899998521 1 1 1245555432 3499999
Q ss_pred CccCCCeEEEEEEEeC----CeeEEEEEEEEEe----eCCeEEecCCCcEEeeCCeEEEEEEEec-CCCC-eEEEEEcCe
Q psy574 158 VRLEDAGEYVCEAENA----VGKISASATLTVQ----MAPIVRERPSDLRLEVGRDAVFLCGIEG-SPPP-STFWMLEGN 227 (977)
Q Consensus 158 v~~~D~G~Y~C~a~n~----~g~~~~~~~L~V~----~~p~~~~~p~~~~v~~G~~v~L~C~~~g-~p~~-~i~W~~~g~ 227 (977)
++.+|+|.|.|.+.+. .......+.|.|. .+|.+...+....+..|+.++|.|.+.+ .|.+ .+.|++++.
T Consensus 86 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~~~ 165 (253)
T 3liz_H 86 LKSEDTAMYYCTRDPAGRAWFAYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSL 165 (253)
T ss_dssp CCGGGCEEEEEEECCBTTTBCCEECCCEEEEECSSCCBCCEEEEECC------CCEEEEEEEEEEEBSSCCEEEEGGGTB
T ss_pred CChhhCEEEEEEEecCCcceeeEECCCEEEEEeccCCCCCeEEEecCCcccCCCCcEEEEEEEeeEeCCCeEEEEEeCCe
Confidence 9999999999999876 2333445678776 5666665555556778999999999988 6666 899999986
Q ss_pred eeeecCCC---ccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEEE
Q psy574 228 RSLIYPGD---RVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVS 286 (977)
Q Consensus 228 ~~~~~~~~---~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V~ 286 (977)
.+...... ..+.+.+. +.|.|...+.+| |.|+ |.|.|..+.......|.+.
T Consensus 166 ~~~~~~~~~~~~~g~~~~~------s~L~i~~~~~~d-g~yt-C~v~~~~~~~~~~~~~~~~ 219 (253)
T 3liz_H 166 SSGVHTFPAVLQSDLYTLS------SSVTVPSSTWPS-ETVT-CNVAHPASSTKVDKKIVPR 219 (253)
T ss_dssp CTTEEECCCEEETTEEEEE------EEEEEETTSTTT-SCCE-EEEEEGGGTEEEEEECCCC
T ss_pred ecceEeCCccccCCeEEEE------EEEEEcHHHCCC-ceEE-EEEEECCCCcceEEEecCc
Confidence 32110000 01334333 389999999999 9999 9999999887777777665
No 421
>1x4y_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes (CDON)binding...; fibronectin type III, FN3; NMR {Mus musculus} SCOP: b.1.2.1
Probab=99.59 E-value=1.1e-14 Score=132.91 Aligned_cols=104 Identities=18% Similarity=0.260 Sum_probs=89.6
Q ss_pred ccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCC---cceEEEEecCCcCeEEecCCCCCceE
Q psy574 636 TLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNN---SALINMTVSASTPTLLLTNLSAGIRY 712 (977)
Q Consensus 636 T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~---~~~~~~~~~~~~~~~~l~~L~p~t~Y 712 (977)
..+.+|+.+|.++++...+.++|.|+|++|+....||.|++|.|+|+..+. .......+.+..++++|.+|+|++.|
T Consensus 3 s~~~~P~~~P~~~~~~~~~~~si~l~W~~p~~~~~~g~i~gY~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y 82 (114)
T 1x4y_A 3 SGSSGPVAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMVEGDRYWHSISHLQPETSY 82 (114)
T ss_dssp SSCCSCCSCCEEEEEECSSSSCEEEEEECCCTTSCCCCCCEEEEEECCTTSCSGGGCCCEEEETTCCEEEECSCCTTCEE
T ss_pred CcccCCCCCCeEEEEEecCCCEEEEEEeCCCchhcCCccceEEEEEEECCCCCCcceeeEecCCcEeEEEcCCCCCCCEE
Confidence 346788889999999999999999999999656789999999999987542 23333456677889999999999999
Q ss_pred EEEEEEEcCCCcCCCCCceEEeecCCC
Q psy574 713 SVSLAATNRAGTGPYSRPALLSLTSGP 739 (977)
Q Consensus 713 ~~~V~A~~~~G~g~~S~~~~~~t~~~~ 739 (977)
.|+|+|+|.+|.|++|.++.++|.+..
T Consensus 83 ~~~V~A~n~~G~g~~S~~v~~~T~~~~ 109 (114)
T 1x4y_A 83 DIKMQCFNEGGESEFSNVMICETKARS 109 (114)
T ss_dssp EEEEEEECTTCCCCCCCCEEEECCCCC
T ss_pred EEEEEEEcCCccCCCcCCEEEEeCCCC
Confidence 999999999999999999999998765
No 422
>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...
Probab=99.58 E-value=7.1e-15 Score=152.63 Aligned_cols=168 Identities=20% Similarity=0.289 Sum_probs=116.0
Q ss_pred CCceEEeCCCeEEEEEEecccCc----eEEEEEECC--eeC-----------------CCCceEEec-----cceEEEcc
Q psy574 106 PKDTTVSASSIIVFECSVGGDAV----LTVHWKRLG--SAM-----------------PEDRMSVLP-----SRSLQLSD 157 (977)
Q Consensus 106 p~~~~v~~G~~v~l~C~v~g~p~----~~i~W~k~~--~~l-----------------~~~~~~~~~-----~~~L~I~~ 157 (977)
|....+.+|++++|.|.+.+.|. +.+.|+|+. ..+ ..+|+.+.. +.+|.|.+
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~ 86 (228)
T 3bae_H 7 SGPGLLKPSQTLSLTCSFSGFSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTSRDMVFMKITS 86 (228)
T ss_dssp ECCSEECTTCCEEEEEEEESSCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETTTTEEEEEECS
T ss_pred CCceeecCCCeEEEEEEEeCcccCCCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCCCCeEEEEEcC
Confidence 56678999999999999988764 889999853 211 124555542 26899999
Q ss_pred CccCCCeEEEEEEEeCCe------e---EEEEEEEEEe----eCCeEEecCCCcEEeeCCeEEEEEEEecC-CCC-eEEE
Q psy574 158 VRLEDAGEYVCEAENAVG------K---ISASATLTVQ----MAPIVRERPSDLRLEVGRDAVFLCGIEGS-PPP-STFW 222 (977)
Q Consensus 158 v~~~D~G~Y~C~a~n~~g------~---~~~~~~L~V~----~~p~~~~~p~~~~v~~G~~v~L~C~~~g~-p~~-~i~W 222 (977)
++.+|+|.|.|.+.+..| . ....+.|.|. .+|.+...+....+.+|+.++|.|.+.+. |.+ .+.|
T Consensus 87 v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~~~l~C~~~g~~P~p~~v~W 166 (228)
T 3bae_H 87 VDTADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTW 166 (228)
T ss_dssp CCGGGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECSCCCBCCEEEEECC-----CCSEEEEEEEEEEEBSSCCEEEE
T ss_pred CCcccCEEEEEEEecCCCccccccceeeeCCcEEEEecCCCCCCCEEEEecccccccCCCCEEEEEEEccEeCCCEEEEE
Confidence 999999999999998754 1 1234788887 35666554434456789999999999886 777 9999
Q ss_pred EEcCeeeeecCCC---ccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEE
Q psy574 223 MLEGNRSLIYPGD---RVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARA 281 (977)
Q Consensus 223 ~~~g~~~~~~~~~---~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~ 281 (977)
++++..+...... ..+.+.. .+.|.|..+..+| |.|+ |.|.|..+......
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~------~s~L~i~~~~~d~-g~Yt-C~~~n~~~~~~~~~ 220 (228)
T 3bae_H 167 NSGSLSSGVHTFPAVLQSDLYTL------SSSVTVTSSTWPS-ESIT-CNVAHPASSTKVDK 220 (228)
T ss_dssp GGGTCCTTEEEEEEEEETTEEEE------EEEEEEETTTTTT-SCCE-EEEEEGGGTEEEEE
T ss_pred eeCCcccCceEcCceeCCCcEEE------EEEEEEEhhhcCC-CcEE-EEEEECCCCCCEEE
Confidence 9998643110000 0012222 2379999988866 9999 99999988765443
No 423
>2djs_A Ephrin type-B receptor 1; tyrosine-protein kinase receptor EPH-2, NET, HEK6, ELK, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=99.58 E-value=7.1e-15 Score=132.67 Aligned_cols=102 Identities=23% Similarity=0.331 Sum_probs=88.1
Q ss_pred eccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCcceEEEEecCCcCeEEecCCCCCceEEE
Q psy574 635 RTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRYSV 714 (977)
Q Consensus 635 ~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~ 714 (977)
+|.+++|+ +|.++++...+.++|.|+|++| ...||.|.+|+|+|+..+........+....++++|.+|+|++.|.|
T Consensus 2 tT~~~~P~-~P~~l~~~~~~~~sv~l~W~~p--~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~ 78 (108)
T 2djs_A 2 SSGSSGPS-TVPIMHQVSATMRSITLSWPQP--EQPNGIILDYEIRYYEKEHNEFNSSMARSQTNTARIDGLRPGMVYVV 78 (108)
T ss_dssp CSCCCCCC-CCSCCEEEEECSSEEEEECCCC--SCCSSCEEEEEEEEEETTSCSTTCEEEEESSSEEEEESCCTTCEEEE
T ss_pred ccCCCCCC-CCcceEEEecCCCEEEEEECCC--CCCCCeEEEEEEEEEECCCCCcceeEEecCccEEEEcCCCCCCEEEE
Confidence 57788887 7789999999999999999999 77899999999999886533322334456789999999999999999
Q ss_pred EEEEEcCCCcCCCCCceEEeecCCC
Q psy574 715 SLAATNRAGTGPYSRPALLSLTSGP 739 (977)
Q Consensus 715 ~V~A~~~~G~g~~S~~~~~~t~~~~ 739 (977)
+|+|+|.+|.|++|.++.++|.+..
T Consensus 79 ~V~A~n~~G~g~~S~~~~~~T~~~~ 103 (108)
T 2djs_A 79 QVRARTVAGYGKFSGKMCFQTLTDS 103 (108)
T ss_dssp EEEEEESSCEEEECCCEEEECCCSS
T ss_pred EEEEEeCCEECCCCCCEEEEeCCCC
Confidence 9999999999999999999998765
No 424
>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}
Probab=99.58 E-value=1.5e-14 Score=154.21 Aligned_cols=175 Identities=14% Similarity=0.191 Sum_probs=123.0
Q ss_pred cCCeEEeCCCceEEeCCCeEEEEEEecccC-----ceEEEEEECC--eeC-------------CCCceEEec---cceEE
Q psy574 98 VKPYIIRGPKDTTVSASSIIVFECSVGGDA-----VLTVHWKRLG--SAM-------------PEDRMSVLP---SRSLQ 154 (977)
Q Consensus 98 ~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p-----~~~i~W~k~~--~~l-------------~~~~~~~~~---~~~L~ 154 (977)
..+.+...|....+.+|++++|.|.+.+.+ .+.+.|+|+. ..+ ..+|+.+.. ..+|.
T Consensus 14 ~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~ 93 (268)
T 1x9q_A 14 SDVVMTQTPLSLPVSLGDQASISCRSSQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSGSGTDFTLK 93 (268)
T ss_dssp CCCCEEEECSEECCCTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEE
T ss_pred ccceEEeeCCeEEecCCCCEEEEeEecCCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEcCCCEEEEE
Confidence 345666778888899999999999998776 4889999863 211 134555542 34799
Q ss_pred EccCccCCCeEEEEEEEeCCee-EEEEEEEEEeeCCe-----------------------EEecCCCcEEeeCCeEEEEE
Q psy574 155 LSDVRLEDAGEYVCEAENAVGK-ISASATLTVQMAPI-----------------------VRERPSDLRLEVGRDAVFLC 210 (977)
Q Consensus 155 I~~v~~~D~G~Y~C~a~n~~g~-~~~~~~L~V~~~p~-----------------------~~~~p~~~~v~~G~~v~L~C 210 (977)
|.+++.+|+|.|+|.+.|..+. ....+.|.|..++. ....+....+.+|++++|.|
T Consensus 94 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~p~~pp~~~~~~~~~~~~~~v~~~~~~~~~v~~G~~v~L~C 173 (268)
T 1x9q_A 94 INRVEAEDLGVYFCSQSTHVPWTFGGGTKLEIKSSADDAKKDAAKKDDAKKDDAKKDGGVKLDETGGGLVQPGGAMKLSC 173 (268)
T ss_dssp ESSCCGGGCEEEEEEECSSSSCEECCCEEEC------------------------CGGGCEEEEECCEEECTTCCEEEEE
T ss_pred ECCCChhHCEEEEEEEecCCCceEcCCEEEEEccCccCCCccccccccccccccccccceEEECCCceEecCCCcEEEEE
Confidence 9999999999999999987543 23345677764321 23345567899999999999
Q ss_pred EEecCCC--CeEEEEEcC--eee--eec------------CCCccccEEEEEcc-CCceEEEEeecccCCCCeEEEEEEE
Q psy574 211 GIEGSPP--PSTFWMLEG--NRS--LIY------------PGDRVDNIQAEITS-DGMNLLKIQNVSRTAAPLIILCLGV 271 (977)
Q Consensus 211 ~~~g~p~--~~i~W~~~g--~~~--~~~------------~~~~~~~~~~~~~~-~g~s~L~I~~v~~~d~G~Y~~C~a~ 271 (977)
.+.+.+. +.+.|+|+. ... +.. .....+++.+.... .+...|.|.+++.+|+|.|. |.+.
T Consensus 174 ~~~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~-C~a~ 252 (268)
T 1x9q_A 174 VTSGFTFGHYWMNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTISRDDSKSSVYLQMNNLRVEDTGIYY-CTGA 252 (268)
T ss_dssp EEESSCGGGCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEE-EEEE
T ss_pred EecCccccccEEEEEEeCCCCCcEEEEEEcccccccccccCCccCCeEEEEEeCCCCEEEEEECCCCHHHCEEEE-EEEc
Confidence 9998764 789999863 222 110 11234677776532 23468999999999999999 9998
Q ss_pred cC
Q psy574 272 NA 273 (977)
Q Consensus 272 n~ 273 (977)
+.
T Consensus 253 ~~ 254 (268)
T 1x9q_A 253 SY 254 (268)
T ss_dssp ET
T ss_pred cC
Confidence 74
No 425
>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...
Probab=99.58 E-value=9.8e-15 Score=152.68 Aligned_cols=165 Identities=15% Similarity=0.247 Sum_probs=114.4
Q ss_pred ceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCC--EE---ee----------cCCCceEEEec----CcEEEEcCC
Q psy574 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNG--HP---ID----------FENSKRLRLVD----GTNLAIQDS 68 (977)
Q Consensus 8 ~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g--~~---l~----------~~~~~r~~~~~----~g~L~I~~v 68 (977)
+...|..+.+.+|++|+|.|.+ . .+.+.|.|+|++ .. +. ....+|+.+.. +.+|.|.++
T Consensus 2 v~q~p~~v~v~~G~~v~L~C~~-~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v 79 (238)
T 1bec_A 2 VTQSPRNKVAVTGGKVTLSCQQ-T-NNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQEQFSLILELA 79 (238)
T ss_dssp EEEECSEEEEETTCCEEEEEEE-S-SCCSEEEEEEECTTSCEEEEEEEEETTEEEECSCCTTCEEECCSSSEEEEEESSC
T ss_pred cccCCCeeEEeCCCcEEEEEEe-C-CCCceEEEEEECCCCCEEEEEEEeCCCcccCCCccceEEEEecCCCEEEEEEecC
Confidence 4567889999999999999998 3 457899999953 11 10 01245666643 247999999
Q ss_pred CCCCCeEEEEEEEecCc----eeeeEeEEEEEEc------CCeEEe-CCCceEEeCCCeEEEEEEeccc-Cc-eEEEEEE
Q psy574 69 RKTDDGRYQCVVKNVAG----TRESTDAVLRVLV------KPYIIR-GPKDTTVSASSIIVFECSVGGD-AV-LTVHWKR 135 (977)
Q Consensus 69 ~~~D~G~Y~C~a~n~~g----~~~s~~~~l~V~~------~P~~~~-~p~~~~v~~G~~v~l~C~v~g~-p~-~~i~W~k 135 (977)
+.+|+|.|+|.+.+..+ ......+.|.|.. +|.+.. .|....+.+|+.++|.|.+.|. |. +.|.|+|
T Consensus 80 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~ 159 (238)
T 1bec_A 80 TPSQTSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWV 159 (238)
T ss_dssp CGGGCEEEEEEEESCTTCGGGCEECCCEEEEEESCGGGCBCCEEEEECCCSTTCSSSCSCSEEEEEEEEBSCCEEEEEEE
T ss_pred CcccCEEEEEEEecCCCCccccccCCCEEEEEeccCCCCCCCceEEECCChHHcccCCceEEEEEEeeEeCCCcEEEEEE
Confidence 99999999999998642 1112335677764 455543 4555566789999999999875 65 4999999
Q ss_pred CCeeCCCCce-----EEeccce------EEEccCccCC-CeEEEEEEEeCC
Q psy574 136 LGSAMPEDRM-----SVLPSRS------LQLSDVRLED-AGEYVCEAENAV 174 (977)
Q Consensus 136 ~~~~l~~~~~-----~~~~~~~------L~I~~v~~~D-~G~Y~C~a~n~~ 174 (977)
++..+..+.. ....+++ |.|......| .|.|+|.|.|..
T Consensus 160 ~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~~~ytC~v~~~~ 210 (238)
T 1bec_A 160 NGKEVHSGVSTDPQAYKESNYSYCLSSRLRVSATFWHNPRNHFRCQVQFHG 210 (238)
T ss_dssp TTEEECTTEEECSSCEEEETTEEEEEEEECCCHHHHTCTTCEEEEEEEECC
T ss_pred CCEECCCceecccceEeCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEcCC
Confidence 9988765321 1123343 3333333334 688999999974
No 426
>2dlh_A Receptor-type tyrosine-protein phosphatase delta; protein-tyrosine phosphatase delta, R-PTP-delta, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=2.8e-15 Score=138.50 Aligned_cols=114 Identities=25% Similarity=0.328 Sum_probs=97.3
Q ss_pred eeCCCCCceEEeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCc--ceEEEEecCCcCeE
Q psy574 624 VDGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNS--ALINMTVSASTPTL 701 (977)
Q Consensus 624 g~g~~s~~~~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~--~~~~~~~~~~~~~~ 701 (977)
|.|++|..+.++|.+++|+.+|.++++...+.++|.|+|++| ...+|.|.+|+|+|+..+.. ...........+++
T Consensus 1 G~g~~S~~~~~~T~~~~P~~~P~~l~~~~~~~~sv~l~W~~p--~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~ 78 (121)
T 2dlh_A 1 GSSGSSGPVLTQTSEQAPSSAPRDVQARMLSSTTILVQWKEP--EEPNGQIQGYRVYYTMDPTQHVNNWMKHNVADSQIT 78 (121)
T ss_dssp CCCCCCSSSCSCCCCCCCCSCCEEEEECCCSSSBCCEEEECC--SCCCSCEEEEEEECCSCTTSCTTTSCCCCCSSCSEE
T ss_pred CCCCCCCCEEEECCCcCCCCCCcccEEEecCCCEEEEEECCC--CCCCCcEeEEEEEEEeCCCCCccccEEEecCCceEE
Confidence 578899999999999999889999999888999999999998 77899999999999875411 11111123467899
Q ss_pred EecCCCCCceEEEEEEEEcCCCcCCCCCceEEeecCCC
Q psy574 702 LLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGP 739 (977)
Q Consensus 702 ~l~~L~p~t~Y~~~V~A~~~~G~g~~S~~~~~~t~~~~ 739 (977)
+|.+|+|++.|.|+|+|+|.+|.|++|+++.++|....
T Consensus 79 ~i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~~~~ 116 (121)
T 2dlh_A 79 TIGNLVPQKTYSVKVLAFTSIGDGPLSSDIQVITQTGS 116 (121)
T ss_dssp CCBSCCSSCEEEEEEEEEESSCBCCCCCCEEEECCCCC
T ss_pred EecCCCCCCEEEEEEEEEeCCccCCCCCCEEEECCCCC
Confidence 99999999999999999999999999999999997655
No 427
>2e7h_A Ephrin type-B receptor 4; FN3 domain, tyrosine- protein kinase receptor HTK, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=7.2e-15 Score=132.83 Aligned_cols=102 Identities=18% Similarity=0.237 Sum_probs=86.2
Q ss_pred eccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecC-CcceEEEEecCCcCeEEecCCCCCceEE
Q psy574 635 RTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGN-NSALINMTVSASTPTLLLTNLSAGIRYS 713 (977)
Q Consensus 635 ~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~-~~~~~~~~~~~~~~~~~l~~L~p~t~Y~ 713 (977)
+|.+++|+ +|.++++...+.++|.|+|++| ...||.|++|+|+|+..+ ........+....++++|.+|+|++.|.
T Consensus 2 tT~~~~P~-~p~~l~~~~~~~~sv~l~W~~p--~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~ 78 (109)
T 2e7h_A 2 SSGSSGPP-AVSDIRVTRSSPSSLSLAWAVP--RAPSGAVLDYEVKYHEKGAEGPSSVRFLKTSENRAELRGLKRGASYL 78 (109)
T ss_dssp CSSCCSSC-CCCCCEEEEEETTEEEEECCCC--CCSSSCCCEEEEEEEETTCCSTTTSEEEEESSSEEEEESCCTTSCEE
T ss_pred CCCCCCCC-CCCccEEEecCCCEEEEEeCCC--CCCCCcEeEEEEEEEECCCCCCceeEEEccCCCEEEECCCCCCCeEE
Confidence 57888887 6789999999999999999999 688999999999998864 2222122334567899999999999999
Q ss_pred EEEEEEcCCCcCCCCCceEEeecCCC
Q psy574 714 VSLAATNRAGTGPYSRPALLSLTSGP 739 (977)
Q Consensus 714 ~~V~A~~~~G~g~~S~~~~~~t~~~~ 739 (977)
|+|+|+|.+|.|++|.++.++|....
T Consensus 79 ~~V~A~n~~G~g~~S~~~~~~T~~~~ 104 (109)
T 2e7h_A 79 VQVRARSEAGYGPFGQEHHSQTQLDS 104 (109)
T ss_dssp EEEEEECSSCBCCCCSCEECCCCCCS
T ss_pred EEEEEEeCCccCCCCCCEEEEcCCCC
Confidence 99999999999999999999887755
No 428
>2ede_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=2e-14 Score=131.17 Aligned_cols=103 Identities=23% Similarity=0.363 Sum_probs=90.3
Q ss_pred eccCCCCCCCCceeEEEEe--cCcEEEEEeeCCCCCCCCeeeeEEEEEEEecC---CcceEEEEecCCcCeEEecCCCCC
Q psy574 635 RTLECEPSGVPQLTDPVLL--NATSVLLKWKPPPVGTHNGVIRTYQIIVGGGN---NSALINMTVSASTPTLLLTNLSAG 709 (977)
Q Consensus 635 ~T~~~~P~~~P~~v~~~~~--~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~---~~~~~~~~~~~~~~~~~l~~L~p~ 709 (977)
+|.+++|+.+|.++++... +.++|.|+|++| ...+|.|++|+|+|+..+ ...+....+....++++|.+|+|+
T Consensus 2 ~T~~~~P~~~P~~l~~~~~~~~~~sv~l~W~~p--~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~ 79 (114)
T 2ede_A 2 SSGSSGPTSAPKDLTVITREGKPRAVIVSWQPP--LEANGKITAYILFYTLDKNIPIDDWIMETISGDRLTHQIMDLNLD 79 (114)
T ss_dssp CCCCCCCCSCCEEEEEEECSSCSSCEEEEEECC--SSCSSCCSEEEEEEESCSSSCTTTSEEEEEETTCCEEEECSCCSS
T ss_pred CCCCCCCCCCCcceEEEEccCCCCEEEEEECCC--CCCCCceeEEEEEEEeCCCCCccceEEEEECCCceEEEEcCCCCC
Confidence 4788899889999999987 778999999999 778899999999998854 233445666788999999999999
Q ss_pred ceEEEEEEEEcCCCcCCCCCceEEeecCCC
Q psy574 710 IRYSVSLAATNRAGTGPYSRPALLSLTSGP 739 (977)
Q Consensus 710 t~Y~~~V~A~~~~G~g~~S~~~~~~t~~~~ 739 (977)
+.|.|+|+|+|.+|.|++|.++.++|....
T Consensus 80 t~Y~~~V~A~n~~G~g~~S~~~~~~T~~~~ 109 (114)
T 2ede_A 80 TMYYFRIQARNSKGVGPLSDPILFRTLKVS 109 (114)
T ss_dssp CEEEEEEEEECSSCBCCCCCCEEEECCCSS
T ss_pred CEEEEEEEEEeCCcCcCCcccEEEEecCCC
Confidence 999999999999999999999999997755
No 429
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}
Probab=99.58 E-value=3.3e-14 Score=141.35 Aligned_cols=151 Identities=13% Similarity=0.147 Sum_probs=112.0
Q ss_pred CceEEeCCCeEEEEEEecc-cCceEEEEEEC-CeeC-------------CC--CceEE-eccceEEEccCccCCCeEEEE
Q psy574 107 KDTTVSASSIIVFECSVGG-DAVLTVHWKRL-GSAM-------------PE--DRMSV-LPSRSLQLSDVRLEDAGEYVC 168 (977)
Q Consensus 107 ~~~~v~~G~~v~l~C~v~g-~p~~~i~W~k~-~~~l-------------~~--~~~~~-~~~~~L~I~~v~~~D~G~Y~C 168 (977)
..+.+.+|++++|.|.+.+ .+.+.|.|+|. +..+ .. +|+.+ ..+++|.|.+++.+|+|.|+|
T Consensus 7 ~~v~v~~G~~vtL~c~~~~~~~~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~~l~~~~~sL~I~~v~~~D~G~Y~C 86 (180)
T 2dru_A 7 PNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALRIYNVSKEDRGDYYM 86 (180)
T ss_dssp CEEEEETTSCEEECCCSSCCCSCSEEEEESSSSCEEEEECSSSCEEECSSTTTTTEEECTTTCCEEECSCCGGGCEEEEE
T ss_pred ceEEEEeCCCEEEeCCCCCCCceeEEEEEecCCeEEEEEECCCCeeEcchhcCCeEEEeCCCccEEEcCCCHHHCeEEEE
Confidence 4568899999999999854 34689999994 3211 11 56666 467889999999999999999
Q ss_pred EEEeCCeeEEEEEEEEEeeCCeEEecCCCcEEeeCCeEEEEEEE-ecCCCCeEEEEEcCeeeeecCCCccccEEEEEccC
Q psy574 169 EAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGI-EGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSD 247 (977)
Q Consensus 169 ~a~n~~g~~~~~~~L~V~~~p~~~~~p~~~~v~~G~~v~L~C~~-~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~ 247 (977)
.+.+.. .....+.|.|..++. .......+..++|.|.+ .+ |.+.+.|++++..+. ..
T Consensus 87 ~v~~~~-~~~~~~~L~V~~~~~-----~P~i~~~~~~v~L~C~~~~g-p~p~i~W~~~~~~l~------------~~--- 144 (180)
T 2dru_A 87 RMLHET-EDQWKITMEVYEMVS-----KPMIYWECSNATLTCEVLEG-TDVELKLYQGKEHLR------------SL--- 144 (180)
T ss_dssp EEESSS-EEEEEEEEEEECCCC-----CCEEEEEGGGTEEEEECSSC-TTCEEEEEETTEEEE------------EE---
T ss_pred EEEcCC-eEEEEEEEEEECCCC-----CCEEEecCCCEEEEEEeCCC-CCCEEEEEECCeECc------------CC---
Confidence 998876 667788899985421 11122245679999999 55 899999999998753 01
Q ss_pred CceEEEEeecccCCCCeEEEEEEEcCCCceeEEEE
Q psy574 248 GMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARAS 282 (977)
Q Consensus 248 g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~ 282 (977)
...+|.+.. .+|+|.|+ |.|.|..+.....+.
T Consensus 145 ~~~~l~~~~--~~d~g~Y~-C~a~N~~~~~~~~~~ 176 (180)
T 2dru_A 145 RQKTMSYQW--TNLRAPFK-CKAVNRVSQESEMEV 176 (180)
T ss_dssp SSSEEEEEC--SCCSSCEE-EEEEETTEEEEEEEC
T ss_pred CCCEEEEEE--hhcCccEE-EEEecCcCcccccee
Confidence 112666633 78999999 999999987765543
No 430
>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}
Probab=99.58 E-value=1.1e-14 Score=153.87 Aligned_cols=166 Identities=15% Similarity=0.198 Sum_probs=115.3
Q ss_pred ceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeC--CEE---eec----------CCCc-eEEEecCcE--EEEcCCC
Q psy574 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKN--GHP---IDF----------ENSK-RLRLVDGTN--LAIQDSR 69 (977)
Q Consensus 8 ~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~--g~~---l~~----------~~~~-r~~~~~~g~--L~I~~v~ 69 (977)
+...|..+.+.+|++|+|.|.+ .+.+.+.|.|+|. +.. +.. ...+ |+.+..++. |.|.+++
T Consensus 4 v~q~p~~v~v~~G~~v~L~C~~-~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~L~I~~v~ 82 (253)
T 3to4_D 4 LEQNPRWRLVPRGQAVNLRCIL-KNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTELRLQVAN 82 (253)
T ss_dssp CEEECSEEEEESSCCEEEEEEC-SCTTCCCEEEEEEETTCCEEEEEEECSTTCEEEEEETTEEEEEECCSSSCCEEEEES
T ss_pred EEeCCCeEEEeCCCcEEEEEEe-CCCCcceEEEEEECCCCCcEEEEEECCCcceecCCccCCcEEEEeCCCCeEEEccCC
Confidence 4556888999999999999998 6778899999982 111 100 0112 777765544 9999999
Q ss_pred CCCCeEEEEEEEecCc-----eeeeEeEEEEEE------cCCeEEeC-CCceEEeCCCeEEEEEEecc-cCce-EEEEEE
Q psy574 70 KTDDGRYQCVVKNVAG-----TRESTDAVLRVL------VKPYIIRG-PKDTTVSASSIIVFECSVGG-DAVL-TVHWKR 135 (977)
Q Consensus 70 ~~D~G~Y~C~a~n~~g-----~~~s~~~~l~V~------~~P~~~~~-p~~~~v~~G~~v~l~C~v~g-~p~~-~i~W~k 135 (977)
.+|+|.|+|.+.+..+ ......+.|.|. .+|.+... +....+..|+.++|.|.+.| .|.+ .+.|+|
T Consensus 83 ~~DsG~Y~C~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k 162 (253)
T 3to4_D 83 MSQGRTLYCTSSADHWTNTGQLYFGEGSKLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWV 162 (253)
T ss_dssp CSSCEEEEEEEECSCCSTTCCEEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEE
T ss_pred hhhCeEEEEEEecCCCCcccceEECCCEEEEEecCCCCCCCCeEEEeCCChhhcccCCceEEEEEEceEECCcEEEEEEE
Confidence 9999999999986543 112233467776 34444332 33333445789999999987 5666 899999
Q ss_pred CCeeCCCCceE---------------EeccceEEEccCccCC-CeEEEEEEEeCC
Q psy574 136 LGSAMPEDRMS---------------VLPSRSLQLSDVRLED-AGEYVCEAENAV 174 (977)
Q Consensus 136 ~~~~l~~~~~~---------------~~~~~~L~I~~v~~~D-~G~Y~C~a~n~~ 174 (977)
++..+...... +.....|.|.....+| .|.|+|.|.|..
T Consensus 163 ~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~~~ytC~v~h~~ 217 (253)
T 3to4_D 163 NGKEVHSGVSTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYG 217 (253)
T ss_dssp TTEEECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECC
T ss_pred CCEECCCceecccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEeCC
Confidence 99887653221 1112367787777777 779999999864
No 431
>1x5i_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=99.58 E-value=1.6e-14 Score=134.26 Aligned_cols=109 Identities=25% Similarity=0.365 Sum_probs=93.8
Q ss_pred cceeCCCCCceEEeccCC------CCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCcceEEEEec
Q psy574 622 GSVDGKPSNLRAVRTLEC------EPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVS 695 (977)
Q Consensus 622 ~~g~g~~s~~~~~~T~~~------~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~~~~~~~~~ 695 (977)
..|.|++|..+.++|.++ +|+ +|.++++...+ ++|.|+|++| ...||.|++|.|+|+. +........+.
T Consensus 3 ~~G~g~~S~~~~~~T~~~~~~~~~~P~-~P~~l~~~~~~-~sv~l~W~~P--~~~~g~i~~Y~v~y~~-~~~~~~~~~~~ 77 (126)
T 1x5i_A 3 SGSSGPATDWLSAETFESDLDETRVPE-VPSSLHVRPLV-TSIVVSWTPP--ENQNIVVRGYAIGYGI-GSPHAQTIKVD 77 (126)
T ss_dssp SCCCCCCCCCCCSCCCCTTSBCSSCCC-SCSEEEEEEET-TEEEEEEECC--SCTTBCCCEEEEEECS-SCGGGEEEECC
T ss_pred CCccCCCCCCEEeECccccCccCCCCC-CCCeeEEEecC-CEEEEEEcCC--CCCCCCEeEEEEEEEc-CCCCceEEEeC
Confidence 478899999999999998 887 89999999886 9999999999 6779999999999985 33344455677
Q ss_pred CCcCeEEecCCCCCceEEEEEEEEcCCCcCCCCCceEEee
Q psy574 696 ASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSL 735 (977)
Q Consensus 696 ~~~~~~~l~~L~p~t~Y~~~V~A~~~~G~g~~S~~~~~~t 735 (977)
.+.++++|.+|+|++.|.|+|+|+|.+|.|++|.....++
T Consensus 78 ~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~s~~~~~T~ 117 (126)
T 1x5i_A 78 YKQRYYTIENLDPSSHYVITLKAFNNVGEGIPLYESAVTR 117 (126)
T ss_dssp TTCCEEEECSCCSSCEECCEEEEECSSCBCCCCCCCEECC
T ss_pred CCeeEEEEeCCCCCCEEEEEEEEEeCCccCcceeeEEecc
Confidence 8889999999999999999999999999999997544433
No 432
>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...
Probab=99.57 E-value=1.1e-15 Score=156.05 Aligned_cols=169 Identities=14% Similarity=0.197 Sum_probs=106.3
Q ss_pred ccceecccceEE--eCCCcEEEEEECCCCCC----CCeEEEEeCCEEeecCCCceEEEecCcEEEEcC---CCCC---CC
Q psy574 6 EEFRVQPKSQRV--AAGDTALLECGPPRGHP----EPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQD---SRKT---DD 73 (977)
Q Consensus 6 ~~~~~~p~~~~v--~~G~~v~L~C~~~~g~P----~~~v~W~k~g~~l~~~~~~r~~~~~~g~L~I~~---v~~~---D~ 73 (977)
|.+.+.|....+ .+|++++|.|.+ .|.| ...|.|+|+|..+......+.....+|.|.|.. +... |+
T Consensus 2 P~v~~~pps~~~~~~~G~~v~L~C~~-~g~~p~~~~~~v~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~~d~ 80 (207)
T 1l6x_A 2 PSVFLFPPKPKDTLMISRTPEVTCVV-VDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNG 80 (207)
T ss_dssp CEEEEECCCHHHHHCTTSCCEEEEEE-EEECSSSCCCEEEEEETTEEECCCEECCCEECTTSCEEEEEEEECCHHHHHTT
T ss_pred CeEEEeCcChHHheecCCceEEEEEE-ecccCCCCCeEEEEEECCccccCcccCCceeccCCcEEEEEEEEEEHHHccCC
Confidence 344555545444 799999999999 4543 359999999988743211112223355555432 3344 49
Q ss_pred eEEEEEEEecCceee-eEeEEE--EEEcCCeEEeCCCceEEeCCCeEEEEEEeccc-Cc-eEEEEEECCeeCCCC---ce
Q psy574 74 GRYQCVVKNVAGTRE-STDAVL--RVLVKPYIIRGPKDTTVSASSIIVFECSVGGD-AV-LTVHWKRLGSAMPED---RM 145 (977)
Q Consensus 74 G~Y~C~a~n~~g~~~-s~~~~l--~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~-p~-~~i~W~k~~~~l~~~---~~ 145 (977)
|.|+|.|.|..+... ...+.+ .+..+|.+...+.......|..++|.|.+.|. |. +.|.|+|+|..+... +.
T Consensus 81 g~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~ 160 (207)
T 1l6x_A 81 KEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPP 160 (207)
T ss_dssp CCEEEEEECTTSSSCEEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCC
T ss_pred ceEEEEEEcCcCCcceEEEeccCCCCCcCCEEEEECCChHHhcCCcEEEEEEEeCeECCCeEEEEEECCeeccCccccCc
Confidence 999999999876531 222222 34456766544433222356679999999884 54 499999999887532 12
Q ss_pred EEeccce------EEEccCccCCCeEEEEEEEeCCe
Q psy574 146 SVLPSRS------LQLSDVRLEDAGEYVCEAENAVG 175 (977)
Q Consensus 146 ~~~~~~~------L~I~~v~~~D~G~Y~C~a~n~~g 175 (977)
....+++ |.|.....+|.|.|+|.|.|...
T Consensus 161 ~~~~~gt~~~~s~l~i~~~~~~~~g~YtC~a~n~~l 196 (207)
T 1l6x_A 161 VLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEAL 196 (207)
T ss_dssp EECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred eECCCCCEEEEEEEEECHHHcCCCCEEEEEEEcCCc
Confidence 2233443 44444445679999999999753
No 433
>1x5f_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=99.57 E-value=1.7e-14 Score=132.95 Aligned_cols=112 Identities=21% Similarity=0.272 Sum_probs=94.4
Q ss_pred CCCCCceEEeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecC-CcceEEEEecCCcCeEEec
Q psy574 626 GKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGN-NSALINMTVSASTPTLLLT 704 (977)
Q Consensus 626 g~~s~~~~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~-~~~~~~~~~~~~~~~~~l~ 704 (977)
+..+..+.++|.+.+|. +|.++++...+.++|.|+|++|. .+.+|.|.+|+|+|+..+ ........+....+.++|.
T Consensus 3 sgss~~~~~~t~~~~P~-~P~~l~~~~~~~~sv~l~W~~p~-~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~ 80 (120)
T 1x5f_A 3 SGSSGEHAPATTGPLPS-APRDVVASLVSTRFIKLTWRTPA-SDPHGDNLTYSVFYTKEGIARERVENTSHPGEMQVTIQ 80 (120)
T ss_dssp CCCCSSCCCCCCCCCCC-CCEEEEEEEECSSCEEEEEECCS-SCSSCCSSEEEEEEEETTCCCCEEEECSSTTCSEEEEC
T ss_pred CCCCCCEEecCCCCCCC-CCCCcEEEecCCCEEEEEECCCC-CCCCCcEEEEEEEEEECCCCCceEEEeccCCccEEEeC
Confidence 34556677889988886 88999999999999999999983 388899999999999865 3333334445678999999
Q ss_pred CCCCCceEEEEEEEEcCCCcCCCCCceEEeecCCC
Q psy574 705 NLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGP 739 (977)
Q Consensus 705 ~L~p~t~Y~~~V~A~~~~G~g~~S~~~~~~t~~~~ 739 (977)
+|+|++.|.|+|+|+|.+|.|++|.++.++|....
T Consensus 81 ~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~~~~ 115 (120)
T 1x5f_A 81 NLMPATVYIFRVMAQNKHGSGESSAPLRVETQPES 115 (120)
T ss_dssp SCCTTCEEEEEEEEECSSCEEEECCCEEEECCCCC
T ss_pred CCCCCCEEEEEEEEECCCccCCCCCCEEEEeCCCC
Confidence 99999999999999999999999999999997654
No 434
>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}
Probab=99.57 E-value=1.7e-14 Score=153.91 Aligned_cols=171 Identities=16% Similarity=0.255 Sum_probs=123.0
Q ss_pred CCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEEC--CeeC-----------------CCCceEEec----cceEEE
Q psy574 99 KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRL--GSAM-----------------PEDRMSVLP----SRSLQL 155 (977)
Q Consensus 99 ~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~--~~~l-----------------~~~~~~~~~----~~~L~I 155 (977)
.+.+...|..+.+.+|++++|.|.+. .+.+.+.|+|. +... ..+|+.+.. +.+|.|
T Consensus 26 ~~~v~~~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I 104 (268)
T 3pl6_D 26 GAGVSQTPSNKVTEKGKYVELRCDPI-SGHTALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVRPEGSVSTLKI 104 (268)
T ss_dssp -SSCBCCCSEEEEETTCCEEEEEBCB-TTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEE
T ss_pred CceeEeCCCEEEecCCCCEEEEEEeC-CCCceEEEEEECCCCCcEEEEEECCCCccccCCCccCcEEEEecCCCEEEEEE
Confidence 34566778888999999999999986 57789999993 2211 115666653 567999
Q ss_pred ccCccCCCeEEEEEEEeC--CeeEEEEEEEEEee------CCeEEe-cCCCcEEeeCCeEEEEEEEecCCCC--eEEEEE
Q psy574 156 SDVRLEDAGEYVCEAENA--VGKISASATLTVQM------APIVRE-RPSDLRLEVGRDAVFLCGIEGSPPP--STFWML 224 (977)
Q Consensus 156 ~~v~~~D~G~Y~C~a~n~--~g~~~~~~~L~V~~------~p~~~~-~p~~~~v~~G~~v~L~C~~~g~p~~--~i~W~~ 224 (977)
.+++.+|+|.|+|.+.+. .........|.|.. +|.+.. .+....+.+|+.++|.|.+.+.+++ .+.|++
T Consensus 105 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~~ 184 (268)
T 3pl6_D 105 QRTERGDSAVYLCATSALGDTQYFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWV 184 (268)
T ss_dssp CSCCGGGCEEEEEEEESSSSSCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEE
T ss_pred CCCCcccCEEEEEEEecCCCceeeCCcEEEEEecCcccccCCceEEeCCCcccccCCCceEEEEEECcccCCCeEEEEEE
Confidence 999999999999999973 33444556777774 565544 4555566779999999999986554 899999
Q ss_pred cCeeeeecC-----------CCccccEEEEEccCCceEEEEeecccCC-CCeEEEEEEEcCCCce
Q psy574 225 EGNRSLIYP-----------GDRVDNIQAEITSDGMNLLKIQNVSRTA-APLIILCLGVNAAGSD 277 (977)
Q Consensus 225 ~g~~~~~~~-----------~~~~~~~~~~~~~~g~s~L~I~~v~~~d-~G~Y~~C~a~n~~g~~ 277 (977)
+|..+.... ....+.+.+. +.|.|.....+| .|.|+ |.|.|.....
T Consensus 185 ~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~------s~l~i~~~~~~d~~g~Yt-C~v~~~~l~~ 242 (268)
T 3pl6_D 185 NGKEVHSGVCTDPQPLKEQPALNDSRYSLS------SRLRVSATFWQNPRNHFR-CQVQFYGLSE 242 (268)
T ss_dssp SSSEECTTEEECSSCEESSTTCTTCCEEEE------EEEEEEHHHHSCTTCEEE-EEEEECCBCT
T ss_pred CCEECCCCeEeccccccccccCCCCcEEEE------EEEEEcHHHhccCCCEEE-EEEEcCCCCC
Confidence 998763210 0012334333 278888888887 99999 9999986543
No 435
>3g9v_A Interleukin 22 receptor, alpha 2; cytokine, cytokine receptor, receptor, glycoprotein, polymorphism, secreted, cytokine/cytokine receptor complex; 2.76A {Homo sapiens}
Probab=99.56 E-value=7e-15 Score=149.43 Aligned_cols=184 Identities=8% Similarity=-0.012 Sum_probs=119.5
Q ss_pred EEEEEeeEeCCCeEEEEEEecCC--CccceEEEEEEecCCCCCceEEEEeecCccceEEECC--CCCCcEEEEEEEEeec
Q psy574 547 IELTEVKPMTSTSVKLTWEILNT--DYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTG--LAHYSRYEFFLVPFFG 622 (977)
Q Consensus 547 ~~~l~~~~~~~tsv~lsW~~p~~--~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~--L~p~t~Y~~~V~a~n~ 622 (977)
+.++++...+...+ |+|+++.. +....|.|+|+..+ ...|...........+.+.|++ |.++..|.++|+|.+.
T Consensus 11 P~nv~~~s~n~~~i-L~W~p~~~~~~~~~~Y~Vqy~~~~-~~~W~~~~~C~~i~~~~Cdlt~~~~~~~~~Y~~RV~A~~~ 88 (211)
T 3g9v_A 11 PQRVQFQSRNFHNI-LQWQPGRALTGNSSVYFVQYKIYG-QRQWKNKEDCWGTQELSCDLTSETSDIQEPYYGRVRAASA 88 (211)
T ss_dssp CEEEEEEEETTEEE-EEEECCCC---CCCEEEEEEEETT-CSSCEEEEEEEEECCSEEECTGGGCSTTSCEEEEEEEEET
T ss_pred CceeEEEEEcCceE-EEECCCCCCCCCCeEEEEEEEECC-CCceEECccCCCCCCCEECCCCcccccCccEEEEEEEECC
Confidence 47999988888776 99999933 33788999999876 4788865444434567888875 5789999999999999
Q ss_pred ceeCCCCCceEEeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCC--CCCee--------eeEEEEEEEecCCcceEEE
Q psy574 623 SVDGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVG--THNGV--------IRTYQIIVGGGNNSALINM 692 (977)
Q Consensus 623 ~g~g~~s~~~~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~--~~ng~--------i~~Y~v~~~~~~~~~~~~~ 692 (977)
.+.+.++....|.+..+...+||. +.+...+ ++|.|.|++|... ..||. ...|+|.|++.+.... ..
T Consensus 89 ~~~S~ws~~~~f~~~~~t~i~PP~-v~v~~~~-~si~V~~~~P~~~~~~~ng~~~~~~~~~~l~Y~v~y~~~~~~~~-~~ 165 (211)
T 3g9v_A 89 GSYSEWSMTPRFTPWWETKIDPPV-MNITQVN-GSLLVILHAPNLPYRYQKEKNVSIEDYYELLYRVFIINNSLEKE-QK 165 (211)
T ss_dssp TEECCCEECCCBCHHHHCBCCCCE-EECC------CCCEEECCCCGGGGCSSCSSCHHHHTTCEEEEEEC------C-EE
T ss_pred CCcCCCEecCcccccccCccCCCE-EEEEEcC-CEEEEEEECCCCccccCCCceeeehhcceeEEEEEEEECCCccE-EE
Confidence 999988877777775444456774 8877654 5899999999521 14553 4789999988543222 22
Q ss_pred EecCCcCeEEecCCCCCceEEEEEEEEcC--CCcCCCCCceEEee
Q psy574 693 TVSASTPTLLLTNLSAGIRYSVSLAATNR--AGTGPYSRPALLSL 735 (977)
Q Consensus 693 ~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~--~G~g~~S~~~~~~t 735 (977)
.+....+.++|.+|+|++.|.|+|+|+.. ...|.+|.+.++++
T Consensus 166 ~~~~~~~~~~i~~L~p~t~Ycv~V~a~~~~~~~~s~~S~~~C~~~ 210 (211)
T 3g9v_A 166 VYEGAHRAVEIEALTPHSSYCVVAEIYQPMLDRRSQRSEERCVEI 210 (211)
T ss_dssp EEEESSCCCC----------CEEEEEEETTTTEECCCCCC-----
T ss_pred EEecCCcEEEEecCCCCCeEEEEEEEEeCCCCCcCCCCCCEeECC
Confidence 33456788999999999999999999964 45688998887654
No 436
>1wfn_A Sidekick 2; FN3, cell adhesion, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=99.56 E-value=8.5e-15 Score=134.77 Aligned_cols=105 Identities=25% Similarity=0.303 Sum_probs=92.9
Q ss_pred eeCCCCCceEEeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecC-CcceEEEEecCCcCeEE
Q psy574 624 VDGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGN-NSALINMTVSASTPTLL 702 (977)
Q Consensus 624 g~g~~s~~~~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~-~~~~~~~~~~~~~~~~~ 702 (977)
|.|++|..+.++|.+++|+ +|.++++...+.++|.|+|++| ...||.|.+|+|+|+..+ ........+....++++
T Consensus 1 G~g~~S~~~~~~T~~~~P~-~P~~l~~~~~~~~sv~l~W~~p--~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~ 77 (119)
T 1wfn_A 1 GSSGSSGPQLVRTHEDVPG-PVGHLSFSEILDTSLKVSWQEP--GEKNGILTGYRISWEEYNRTNTRVTHYLPNVTLEYR 77 (119)
T ss_dssp CCCCCSCCCSCCSSCCSCC-CCSCCEEESCCSSEEEEECCCC--TTCCSCCCEEEEEEEESSCGGGCCCEEECSSCCEEE
T ss_pred CCCCCCCCEEEECCCCCCC-CCCceEEEECCCCEEEEEEcCC--CCCCCcEEEEEEEEEECCCCCceEEEEeCCCceEEE
Confidence 5688999999999999997 6789999998999999999999 678999999999999865 33334456677889999
Q ss_pred ecCCCCCceEEEEEEEEcCCCcCCCCCce
Q psy574 703 LTNLSAGIRYSVSLAATNRAGTGPYSRPA 731 (977)
Q Consensus 703 l~~L~p~t~Y~~~V~A~~~~G~g~~S~~~ 731 (977)
|.+|+|++.|.|+|+|+|.+|.|++|.++
T Consensus 78 i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~ 106 (119)
T 1wfn_A 78 VTGLTALTTYTIEVAAMTSKGQGQVSAST 106 (119)
T ss_dssp EESCCTTCEEEEEEEEECSSCEEEEEEEE
T ss_pred EcCCCCCCEEEEEEEEEcCCccCCCCCCE
Confidence 99999999999999999999999999987
No 437
>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}
Probab=99.56 E-value=1.4e-14 Score=155.45 Aligned_cols=182 Identities=16% Similarity=0.295 Sum_probs=126.9
Q ss_pred EEeCCCceEEeCCCeEEEEEEeccc--CceEEEEEECCe--eC------------------CCCceEEecc-----ceEE
Q psy574 102 IIRGPKDTTVSASSIIVFECSVGGD--AVLTVHWKRLGS--AM------------------PEDRMSVLPS-----RSLQ 154 (977)
Q Consensus 102 ~~~~p~~~~v~~G~~v~l~C~v~g~--p~~~i~W~k~~~--~l------------------~~~~~~~~~~-----~~L~ 154 (977)
+.. |....+.+|++++|.|.+.+. +.+.+.|+|... .. ..+|+.+..+ .+|.
T Consensus 4 v~q-p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~ 82 (280)
T 3fku_X 4 LVQ-SGAEVKKPGSSVKVSCTSSEVTFSSFAISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITADQSTRTAYMD 82 (280)
T ss_dssp EEC-CCCCEECTTCCEEEEEEECCSCCTTSCEEECCBCSSSCCCCCEEECTTTCCEEECGGGTTTCEEEEETTTTEEEEE
T ss_pred EEc-CCCEEECCCCcEEEEEEeeccCCCCeEEEEEEeCCCCCCEEEEEEeccCCccccCcccCCcEEEEEeCCCCEEEEE
Confidence 444 778899999999999999765 567899998531 11 0135555422 3799
Q ss_pred EccCccCCCeEEEEEEEeC---------CeeEEEEEEEEEee---------------CCeEEecCCCcEEeeCCeEEEEE
Q psy574 155 LSDVRLEDAGEYVCEAENA---------VGKISASATLTVQM---------------APIVRERPSDLRLEVGRDAVFLC 210 (977)
Q Consensus 155 I~~v~~~D~G~Y~C~a~n~---------~g~~~~~~~L~V~~---------------~p~~~~~p~~~~v~~G~~v~L~C 210 (977)
|.+++.+|+|.|+|.+.+. .......+.|.|.. ++.+...|. ..+.+|++++|.|
T Consensus 83 I~~v~~~DsG~Y~C~~~~~~~~~g~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~v~~~p~-~~v~~G~~v~L~C 161 (280)
T 3fku_X 83 LRSLRSEDTAVYYCARSPSYICSGGTCVFDHWGQGTLVTVSSGGGGSGGGGSGGGGIQPGLTQPPS-VSKGLRQTATLTC 161 (280)
T ss_dssp ECSCCSTTCEECCEEECSSSSSSSTTCCCCEECCCCEEEECC--------------CCCSBBCCSE-EEECTTCCEEEEE
T ss_pred ECCCChhhCEEEEEEEecCCccccccccccEECCCEEEEEcCCCCccCCCCCCceEeeeEEEeCCc-EEEecCCCEEEEE
Confidence 9999999999999999986 12234456777766 445555555 8899999999999
Q ss_pred EEec-CC-CCeEEEEEcC--eeee--ec-----CCCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCc---
Q psy574 211 GIEG-SP-PPSTFWMLEG--NRSL--IY-----PGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGS--- 276 (977)
Q Consensus 211 ~~~g-~p-~~~i~W~~~g--~~~~--~~-----~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~--- 276 (977)
.+.+ .+ .+.+.|+|.. .... .. .....+|+..... .+...|+|.+++.+|+|.|. |.+.|..+.
T Consensus 162 ~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~-~~~~~L~I~~v~~~DsG~Y~-C~~~~~~~~~~~ 239 (280)
T 3fku_X 162 TGNSNNVGNQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASRS-GNTASLTITGLQPEDEADYY-CSTWDSSLSAVV 239 (280)
T ss_dssp ECCCCCCCTTCCEEEEECSSSCCEESCCTTCCCCSSSCTTEEEEEE-TTEEEEEECSCCGGGCSEEE-EEEEETTTTEEE
T ss_pred EecCCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCCEEEEcc-CCEEEEEECCCCHHHCEEEE-EEEecCCCCceE
Confidence 9987 43 3789999843 2211 10 0112356776653 34568999999999999999 999987632
Q ss_pred eeEEEEEEEEC
Q psy574 277 DLARASLTVSG 287 (977)
Q Consensus 277 ~~~~~~l~V~~ 287 (977)
....+.|.|..
T Consensus 240 ~g~~t~l~V~~ 250 (280)
T 3fku_X 240 FGGGTKLTVLG 250 (280)
T ss_dssp EBCCCEEEEC-
T ss_pred ECCCEEEEECC
Confidence 22334667765
No 438
>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Probab=99.56 E-value=3.8e-14 Score=148.55 Aligned_cols=176 Identities=18% Similarity=0.251 Sum_probs=121.9
Q ss_pred eEEeCCCceEEeCCCeEEEEEEeccc--CceEEEEEECC--eeC------------------CCCceEEec-----cceE
Q psy574 101 YIIRGPKDTTVSASSIIVFECSVGGD--AVLTVHWKRLG--SAM------------------PEDRMSVLP-----SRSL 153 (977)
Q Consensus 101 ~~~~~p~~~~v~~G~~v~l~C~v~g~--p~~~i~W~k~~--~~l------------------~~~~~~~~~-----~~~L 153 (977)
.+...|..+.+.+|++++|.|.+.+. +.+.+.|+|+. ..+ ..+|+.+.. +.+|
T Consensus 3 ~v~q~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L 82 (242)
T 1hxm_B 3 HLEQPQISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTL 82 (242)
T ss_dssp EEECCCSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEE
T ss_pred ccCcCCceEEecCCCcEEEEEEeCCccccCceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecCCCcEEEE
Confidence 45667888899999999999999775 66789999953 211 235665542 3579
Q ss_pred EEccCccCCCeEEEEEEEeCC------e-eEEEEEEEEEee-------CCeEEec-CCCcEEeeCCeEEEEEEEecC-CC
Q psy574 154 QLSDVRLEDAGEYVCEAENAV------G-KISASATLTVQM-------APIVRER-PSDLRLEVGRDAVFLCGIEGS-PP 217 (977)
Q Consensus 154 ~I~~v~~~D~G~Y~C~a~n~~------g-~~~~~~~L~V~~-------~p~~~~~-p~~~~v~~G~~v~L~C~~~g~-p~ 217 (977)
.|.+++.+|+|.|.|.+.+.. . .....+.|.|.. +|.+.+. |....+.+|+.++|.|.+.+. |.
T Consensus 83 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~p~~~v~~p~~~~~~~g~~v~L~C~~~g~~P~ 162 (242)
T 1hxm_B 83 TIHNVEKQDIATYYCALWEAQQELGKKIKVFGPGTKLIITDKQLDADVSPKPTIFLPSIAETKLQKAGTYLCLLEKFFPD 162 (242)
T ss_dssp EECSCCGGGCEEEEEEEEEECSSTTCEEEEECCCEEEEEESSCCCSCCSCBCCCCCCCGGGGGSSSCEEEEEEEEEESSC
T ss_pred EECCCCcccCEEEEEeeecCCccccccceeEcCcEEEEEcccccCCCcCCCceEECCChhhcccCCCceEEEEEeeEECC
Confidence 999999999999999999853 1 122356788875 3433322 444456679999999999886 54
Q ss_pred -CeEEEEEcCe-eeeecC-C---CccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEEEEEEE
Q psy574 218 -PSTFWMLEGN-RSLIYP-G---DRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTV 285 (977)
Q Consensus 218 -~~i~W~~~g~-~~~~~~-~---~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~V 285 (977)
+.+.|++++. .+.... . ...+.+... +.|.|..++. | |.|+ |.|.|..+.......+.+
T Consensus 163 ~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~~~------s~L~i~~~~~-~-g~y~-C~v~n~~~~~~~~~~~~~ 227 (242)
T 1hxm_B 163 VIKIHWEEKKSNTILGSQEGNTMKTNDTYMKF------SWLTVPEKSL-D-KEHR-CIVRHENNKNGVDQEIIF 227 (242)
T ss_dssp CEEEEEEESSSCCCCCCEECCCEECSSSEEEE------EEEEECTGGG-G-SCEE-EEEEETTSGGGSCEEEEE
T ss_pred CeEEEEEcCCCEeecCccccceecCCCcEEEE------EEEEEccccC-C-CEEE-EEEEeCCCCCCceeEeec
Confidence 6899999987 442100 0 011222222 3788887775 5 9999 999999987655555544
No 439
>1va9_A DOWN syndrome cell adhesion molecule like- protein 1B; FNIII domain, dscaml1 protein, structural genomics; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=99.56 E-value=1.3e-14 Score=134.27 Aligned_cols=112 Identities=29% Similarity=0.409 Sum_probs=94.1
Q ss_pred CCCceEEeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCc-c----eEEEEecCCcCeEE
Q psy574 628 PSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNS-A----LINMTVSASTPTLL 702 (977)
Q Consensus 628 ~s~~~~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~-~----~~~~~~~~~~~~~~ 702 (977)
.|..+.++|.+++|+.+|.++++...+.++|.|+|++|..+..||.|.+|+|+|+..+.. . .......++.++++
T Consensus 2 sS~~~~~~T~~~~P~~~P~~~~~~~~~~~sv~l~W~~p~~~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (122)
T 1va9_A 2 SSGSSGISTEEAAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQYSIVEMKATGDSEVYT 81 (122)
T ss_dssp CCCCCSSCSSCCCCSSCCEEEEEEECSSSEEEEEEECCCSSTTCSCCCEEEEEEEESSTTSCCSCBCCBCCCCSSEEEEE
T ss_pred CCCCEEEECCCCCCCCCCcceEEEeccCCEEEEEEeCCCCcCCCCcEeEEEEEEEECCCCCCcceEEEEEecCCceeEEE
Confidence 456788999999998899999999999999999999996445899999999999886521 1 11222345568999
Q ss_pred ecCCCCCceEEEEEEEEcCCCcCCCCCceEEeecCCC
Q psy574 703 LTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGP 739 (977)
Q Consensus 703 l~~L~p~t~Y~~~V~A~~~~G~g~~S~~~~~~t~~~~ 739 (977)
|.+|+|++.|.|+|+|+|.+|.|++|.++.++|....
T Consensus 82 i~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~~~~ 118 (122)
T 1va9_A 82 LDNLKKFAQYGVVVQAFNRAGTGPSSSEINATTLESG 118 (122)
T ss_dssp EESCCSSCCEEEEEEEEETTEECCCCCCEECCCCSSC
T ss_pred eCCCCCCCEEEEEEEEEcCCCCCCCccCEEEEeCCCC
Confidence 9999999999999999999999999999999887655
No 440
>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}
Probab=99.56 E-value=1.8e-15 Score=157.38 Aligned_cols=165 Identities=14% Similarity=0.231 Sum_probs=113.9
Q ss_pred cccce-ecccceEEeCCCcEEEEEECCCC-CCC-C-eEEEEeCCEEe-ecCCCceEEEecC------cEEEEcCCCCCCC
Q psy574 5 REEFR-VQPKSQRVAAGDTALLECGPPRG-HPE-P-TLVWKKNGHPI-DFENSKRLRLVDG------TNLAIQDSRKTDD 73 (977)
Q Consensus 5 ~~~~~-~~p~~~~v~~G~~v~L~C~~~~g-~P~-~-~v~W~k~g~~l-~~~~~~r~~~~~~------g~L~I~~v~~~D~ 73 (977)
.|.+. ..|..+.+.+|++++|.|.+ .+ .|. + .|.|+|||+.+ .... .......+ ..|.|.+++.+|+
T Consensus 12 ~P~v~~~~p~~~~v~~G~~v~L~C~~-~g~~P~~p~~v~W~~~g~~~~~~~~-~~~~~~~~g~~~~~s~L~I~~~~~~D~ 89 (231)
T 2w59_A 12 PIQLYAIPPSPGELYISLDAKLRCLV-VNLPSDSSLSVTWTREKSGNLRPDP-MVLQEHFNGTYSASSAVPVSTQDWLSG 89 (231)
T ss_dssp CCEEEEECCCHHHHHTSCCCEEEEEE-EEESCCTTCEEEEECSSSSCCCCCC-CEEEECTTSCEEEEEEEECCHHHHHTT
T ss_pred CCEEEEeCcChhhcccCCceEEEEEE-eCccCCCCeEEEEEcCCeecccccc-ccceECCCCcEEEEEEEEecchhccCC
Confidence 34443 56777778999999999999 55 574 4 99999999877 3211 11112222 3699999999999
Q ss_pred eEEEEEEEecCceeeeEeEEEEEE------cCCeEEe-CCCceEEeCCCeEEEEEEeccc-C-ceEEEEEECCeeCCCCc
Q psy574 74 GRYQCVVKNVAGTRESTDAVLRVL------VKPYIIR-GPKDTTVSASSIIVFECSVGGD-A-VLTVHWKRLGSAMPEDR 144 (977)
Q Consensus 74 G~Y~C~a~n~~g~~~s~~~~l~V~------~~P~~~~-~p~~~~v~~G~~v~l~C~v~g~-p-~~~i~W~k~~~~l~~~~ 144 (977)
|.|+|.|.|..+. ..+.+.|. .+|.+.. .+.... ..+..++|.|.+.|. | .+.|.|+|+|..+..+.
T Consensus 90 g~Y~C~~~~~~~~---~~~~~~v~~~~~~~~~P~v~v~~~~~~~-~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~ 165 (231)
T 2w59_A 90 ERFTCTVQHEELP---LPLSKSVYRNTGPTTPPLIYPFAPHPEE-LSLSRVTLSCLVRGFRPRDIEIRWLRDHRAVPATE 165 (231)
T ss_dssp CCEEEEEECTTCS---SCEEEEECCCCSCCBCCEEEEECCCGGG-GGSSEEEEEEEEEEEBSSCCEEEEEETTEECCGGG
T ss_pred CEEEEEEEcCCCC---CceEEEEecCCCCCcCCEEEEeCCCHHH-hccCceEEEEEEEeccCCCcEEEEEECCEECCCcc
Confidence 9999999987653 22344443 3565543 333222 335679999999885 4 37999999999886543
Q ss_pred eE-----Ee--------cc-------ceEEEccCccCCCeEEEEEEEeCCe
Q psy574 145 MS-----VL--------PS-------RSLQLSDVRLEDAGEYVCEAENAVG 175 (977)
Q Consensus 145 ~~-----~~--------~~-------~~L~I~~v~~~D~G~Y~C~a~n~~g 175 (977)
+. .. .+ ..|.|.....+|.|.|+|.|.|...
T Consensus 166 ~~~~~~~~~~~~~~~~~~d~gt~~~~s~L~i~~~~~~~~g~YtC~v~n~~l 216 (231)
T 2w59_A 166 FVTTAVLPEERTANGAGGDGDTFFVYSKMSVETAKWNGGTVFACMAVHEAL 216 (231)
T ss_dssp CEECCCEECCTTSCC---CCCCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred cccCccccCcccccccCCCCCeEEEEEEEEEeHHHcCCCCcEEEEEEcCCC
Confidence 11 11 22 3477888888889999999999764
No 441
>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...
Probab=99.55 E-value=2.5e-14 Score=150.98 Aligned_cols=169 Identities=14% Similarity=0.236 Sum_probs=117.7
Q ss_pred ccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCC--E---Eeec----------CCCceEEEec----CcEEEEc
Q psy574 6 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNG--H---PIDF----------ENSKRLRLVD----GTNLAIQ 66 (977)
Q Consensus 6 ~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g--~---~l~~----------~~~~r~~~~~----~g~L~I~ 66 (977)
..+.+.|..+.+.+|++++|.|.+ . .+.+.|.|+|+. . .+.. ...+|+.+.. +.+|.|.
T Consensus 4 ~~v~q~p~~v~v~~G~~v~L~C~~-~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~ 81 (252)
T 1oga_E 4 GGITQSPKYLFRKEGQNVTLSCEQ-N-LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVT 81 (252)
T ss_dssp -CEECSCSEEEEETTCCEEECCEE-C-SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEEC
T ss_pred ccceEcCCeEEEcCCCcEEEEEEe-C-CCCCEEEEEEECCCCCeEEEEEEccCccccCCccCCcEEEEecCCCEEEEEEC
Confidence 456778889999999999999998 3 457899999852 1 1110 1246777753 3579999
Q ss_pred CCCCCCCeEEEEEEEecCc--eeeeEeEEEEEEc------CCeEEe-CCCceEEeCCCeEEEEEEeccc-Cc-eEEEEEE
Q psy574 67 DSRKTDDGRYQCVVKNVAG--TRESTDAVLRVLV------KPYIIR-GPKDTTVSASSIIVFECSVGGD-AV-LTVHWKR 135 (977)
Q Consensus 67 ~v~~~D~G~Y~C~a~n~~g--~~~s~~~~l~V~~------~P~~~~-~p~~~~v~~G~~v~l~C~v~g~-p~-~~i~W~k 135 (977)
+++.+|+|.|+|.+.+..+ ......+.|.|.. +|.+.. .|....+.+|+.++|.|.+.|. |. +.|.|+|
T Consensus 82 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~ 161 (252)
T 1oga_E 82 SAQKNPTAFYLCASSSRSSYEQYFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWV 161 (252)
T ss_dssp SCCSCCCEEEEEEEESSTTSCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEE
T ss_pred cCChhhCEEEEEEEecCCccceeECCCEEEEEecccCCCCCCeEEEECCChhhhccCCceEEEEEEeeEcCCCcEEEEEE
Confidence 9999999999999998521 1112234677763 565544 3544455679999999999875 65 5999999
Q ss_pred CCeeCCCCceEE---------eccc------eEEEccCccC-CCeEEEEEEEeCCee
Q psy574 136 LGSAMPEDRMSV---------LPSR------SLQLSDVRLE-DAGEYVCEAENAVGK 176 (977)
Q Consensus 136 ~~~~l~~~~~~~---------~~~~------~L~I~~v~~~-D~G~Y~C~a~n~~g~ 176 (977)
++..+..+.... ..++ .|.|...... |.|.|+|.+.|....
T Consensus 162 ~g~~l~~~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l~ 218 (252)
T 1oga_E 162 NGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLS 218 (252)
T ss_dssp TTEEECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBC
T ss_pred CCEECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCCC
Confidence 998876532211 1222 3777666654 678999999997643
No 442
>3nfj_J T cell receptor beta chain; immunoglobulin family, immune system; 2.68A {Homo sapiens} PDB: 3hg1_E
Probab=99.55 E-value=4e-14 Score=148.72 Aligned_cols=170 Identities=20% Similarity=0.246 Sum_probs=120.1
Q ss_pred EEeCCCceEEeCCCeEEEEEEecccCceEEEEEECC--ee---------------CCCCceEEec----cceEEEccCcc
Q psy574 102 IIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLG--SA---------------MPEDRMSVLP----SRSLQLSDVRL 160 (977)
Q Consensus 102 ~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~--~~---------------l~~~~~~~~~----~~~L~I~~v~~ 160 (977)
+...|..+.+.+|++++|.|.+.+.+.+.+.|+|.. .. ...+|+.+.. +.+|.|.+++.
T Consensus 4 v~~~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~ 83 (245)
T 3nfj_J 4 IHQWPATLVQPVGSPLSLECTVEGTSNPNLYWYRQAAGRGLQLLFYSVGIGQISSEVPQNLSASRPQDRQFILSSKKLLL 83 (245)
T ss_dssp EEEECSEEEEETTCCEEEEEEEESCSSCEEEEEEESTTSCEEEEEEESSTTCCBCSSCCSSEEEEEETTEEEEEESSCCG
T ss_pred eeCCCceEEecCCCCEEEEEEecCCCCceEEEEEECCCCCcEEEEEECCCcccCCccCCcEEEEecCCCEEEEEECCCCh
Confidence 455677888999999999999998899999999932 11 0124554442 34799999999
Q ss_pred CCCeEEEEEEEeCCe------eEEEEEEEEEee------CCeEEe-cCCCcEEeeCCeEEEEEEEecC-CCC-eEEEEEc
Q psy574 161 EDAGEYVCEAENAVG------KISASATLTVQM------APIVRE-RPSDLRLEVGRDAVFLCGIEGS-PPP-STFWMLE 225 (977)
Q Consensus 161 ~D~G~Y~C~a~n~~g------~~~~~~~L~V~~------~p~~~~-~p~~~~v~~G~~v~L~C~~~g~-p~~-~i~W~~~ 225 (977)
+|+|.|+|.+.+..| .....+.|.|.. +|.+.. .+....+.+|+.++|.|.+.+. |++ .+.|+++
T Consensus 84 ~D~G~Y~C~~~~~~g~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~ 163 (245)
T 3nfj_J 84 SDSGFYLCAWSVSVGAGVPTIYFGEGSWLTVVEDLNKVFPPEVAVFEPSEAEISHTQKATLVCLATGFFPDHVELSWWVN 163 (245)
T ss_dssp GGCEEEEEEEECCTTTSSCCCEECCCEEEEEESCGGGCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEET
T ss_pred hhCEEEEEEEeeccCCCceeEEECCCeEEEEEcccCCCCCCceEeecCCcccccCCCceEEEEEEccCcCCCEEEEEEEC
Confidence 999999999998322 233456777775 566554 3444456679999999999884 444 7899999
Q ss_pred CeeeeecCC-----------CccccEEEEEccCCceEEEEeecccCC-CCeEEEEEEEcCCCcee
Q psy574 226 GNRSLIYPG-----------DRVDNIQAEITSDGMNLLKIQNVSRTA-APLIILCLGVNAAGSDL 278 (977)
Q Consensus 226 g~~~~~~~~-----------~~~~~~~~~~~~~g~s~L~I~~v~~~d-~G~Y~~C~a~n~~g~~~ 278 (977)
|..+..... ...+.+.+. +.|.|......| .|.|+ |.|.|......
T Consensus 164 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~------s~L~i~~~~~~d~g~~Yt-C~v~~~~~~~~ 221 (245)
T 3nfj_J 164 GKEVHSGVCTDPQPLKEQPALNDSRYALS------SRLRVSATFWQNPRNHFR-CQVQFYGLSEN 221 (245)
T ss_dssp TEEECTTEEECSSCEESSSSSTTCCEEEE------EEEEEEHHHHTCTTCEEE-EEEEECCBCSS
T ss_pred CEECCCCcccccccccccccCCCCCEEEE------EEEEECHHHhccCCCeEE-EEEEECCCCCc
Confidence 987632110 012333333 278899888888 66999 99999865543
No 443
>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}
Probab=99.55 E-value=5.2e-14 Score=149.10 Aligned_cols=167 Identities=20% Similarity=0.279 Sum_probs=116.5
Q ss_pred EeCCCceEEeCCCeEEEEEEecccC--ceEEEEEECC--eeC------------------CCCceEEec-----cceEEE
Q psy574 103 IRGPKDTTVSASSIIVFECSVGGDA--VLTVHWKRLG--SAM------------------PEDRMSVLP-----SRSLQL 155 (977)
Q Consensus 103 ~~~p~~~~v~~G~~v~l~C~v~g~p--~~~i~W~k~~--~~l------------------~~~~~~~~~-----~~~L~I 155 (977)
+..|....+.+|++++|.|.+.+.+ .+.+.|+|+. ..+ ..+|+.+.. +.+|.|
T Consensus 10 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I 89 (261)
T 2xqy_G 10 LQQPGAELVKPGASVKMSCKASGYSFTSYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDKSSSTVYIQL 89 (261)
T ss_dssp EECCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEE
T ss_pred EECCCCEEEcCCCCEEEEEEeCCcccCCceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecCCCCEEEEEE
Confidence 3446677899999999999998766 6789999973 211 024565543 358999
Q ss_pred ccCccCCCeEEEEEEEeCCe---eEEEEEEEEEee----CCeEEecCCCcEEeeCCeEEEEEEEecC-CCC-eEEEEEcC
Q psy574 156 SDVRLEDAGEYVCEAENAVG---KISASATLTVQM----APIVRERPSDLRLEVGRDAVFLCGIEGS-PPP-STFWMLEG 226 (977)
Q Consensus 156 ~~v~~~D~G~Y~C~a~n~~g---~~~~~~~L~V~~----~p~~~~~p~~~~v~~G~~v~L~C~~~g~-p~~-~i~W~~~g 226 (977)
.+++.+|+|.|.|.+.+..+ .....+.|.|.. +|.+...+....+.+|+.++|.|.+.+. |.+ .+.|++++
T Consensus 90 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~~v~~g~~v~L~C~~~g~~P~~i~v~W~k~g 169 (261)
T 2xqy_G 90 SSLTSEDSAVYYCGRLGYVYGFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGS 169 (261)
T ss_dssp CSCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCCC--CCSEEEEEEEEEEEBSSCCEEEEGGGT
T ss_pred cCCCcccCeEEEEEEecCCCcceEECCCEEEEEccCCCCCCeEEEeCCCccccCCCcEEEEEEEEeEeCCCCEEEEecCC
Confidence 99999999999999998643 122346788874 4555543333356789999999999875 766 99999998
Q ss_pred eeeeecCCC---ccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCce
Q psy574 227 NRSLIYPGD---RVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSD 277 (977)
Q Consensus 227 ~~~~~~~~~---~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~ 277 (977)
..+...... ..+.+... +.|.|..+..+| |.|+ |.|.|.....
T Consensus 170 ~~~~~~~~~~~~~~g~~~~~------s~L~i~~~~~~~-g~Yt-C~v~n~~~~~ 215 (261)
T 2xqy_G 170 LSSGVHTFPAVLQSDLYTLS------SSVTVTSSTWPS-QSIT-CNVAHPASST 215 (261)
T ss_dssp CCTTEEECCCEEETTEEEEE------EEEEEETTTTTT-SCCE-EEEEEGGGTE
T ss_pred CcCceEecCceecCCcEEEE------EEEEEeccccCC-CEEE-EEEEECCCCc
Confidence 754211000 00222222 389999988888 9999 9999976553
No 444
>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D
Probab=99.55 E-value=3.7e-14 Score=148.99 Aligned_cols=170 Identities=19% Similarity=0.283 Sum_probs=120.8
Q ss_pred CeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEEC--------------CeeC-----CCCceEEec----cceEEEc
Q psy574 100 PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRL--------------GSAM-----PEDRMSVLP----SRSLQLS 156 (977)
Q Consensus 100 P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~--------------~~~l-----~~~~~~~~~----~~~L~I~ 156 (977)
+.+...|..+.+.+|++++|.| ..+.+.+.+.|+|. +... ..+|+.+.. +.+|.|.
T Consensus 3 ~~v~~~p~~v~v~~G~~v~L~C-~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~ 81 (245)
T 4ei6_B 3 PKVLQIPSHQIIDMGQMVTLNC-DPVSNHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVERPDGSYFTLKIQ 81 (245)
T ss_dssp CCCEEECSEEEEETTCCEEEEE-ECCTTCCEEEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEEECCTTSCEEEEEC
T ss_pred cceEeCCceEEecCCCCEEEEE-EcCCCCCEEEEEEECCCCCcEEEEEECCCceeccCCCccCCEEEEeccCceEEEEEC
Confidence 3456677888999999999999 66678889999992 2111 115666553 2389999
Q ss_pred cCccCCCeEEEEEEEeC----CeeEEEEEEEEEe------eCCeEEe-cCCCcEEeeCCeEEEEEEEec-CCCC-eEEEE
Q psy574 157 DVRLEDAGEYVCEAENA----VGKISASATLTVQ------MAPIVRE-RPSDLRLEVGRDAVFLCGIEG-SPPP-STFWM 223 (977)
Q Consensus 157 ~v~~~D~G~Y~C~a~n~----~g~~~~~~~L~V~------~~p~~~~-~p~~~~v~~G~~v~L~C~~~g-~p~~-~i~W~ 223 (977)
+++.+|+|.|+|.+.+. .......+.|.|. .+|.+.. .+....+.+|+.++|.|.+.+ .|.+ .+.|+
T Consensus 82 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~ 161 (245)
T 4ei6_B 82 PTALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWW 161 (245)
T ss_dssp SCCGGGCEEEEEEEECSSTTCCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEE
T ss_pred CCCHhHCEEEEEEEccCCCcceEEEcCCcEEEEecccCCCCCceEEEeCCCcccccCCCceEEEEEEeeEeCCCeEEEEE
Confidence 99999999999999953 2234455677776 3565543 445556677999999999988 4445 89999
Q ss_pred EcCeeeeecCCC-----------ccccEEEEEccCCceEEEEeecccCC-CCeEEEEEEEcCCCce
Q psy574 224 LEGNRSLIYPGD-----------RVDNIQAEITSDGMNLLKIQNVSRTA-APLIILCLGVNAAGSD 277 (977)
Q Consensus 224 ~~g~~~~~~~~~-----------~~~~~~~~~~~~g~s~L~I~~v~~~d-~G~Y~~C~a~n~~g~~ 277 (977)
++|..+...... ..+.+.+. +.|.|.....+| .|.|+ |.|.|.....
T Consensus 162 ~~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~------s~L~i~~~~~~d~~g~yt-C~v~~~~l~~ 220 (245)
T 4ei6_B 162 VNGKEVHSGVCTDPQPLKEQPALNDSRYALS------SRLRVSATFWQNPRNHFR-CQVQFYGLSE 220 (245)
T ss_dssp ETTEEECTTEEECSSCEESSTTSTTCCEEEE------EEEEEEHHHHSCTTCEEE-EEEEECCBCT
T ss_pred ECCEECCCCcccccccccccccCCCCCEEEE------EEEEEcHHHhccCCCeEE-EEEEECCCCC
Confidence 999876421000 12233333 268999998888 99999 9999876543
No 445
>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A
Probab=99.55 E-value=1.7e-14 Score=172.39 Aligned_cols=164 Identities=18% Similarity=0.270 Sum_probs=123.6
Q ss_pred ccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeec----------CCCceEEEecCcEEEEcCCCCCCCeEEEEEEE
Q psy574 12 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDF----------ENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVK 81 (977)
Q Consensus 12 p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~----------~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~a~ 81 (977)
...+.+.+|++++|.|.+..+.|.+.|.|+|++..+.. ....|..+..+++|.|.+++.+|+|.|+|++.
T Consensus 373 ~~~~~~~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~~~D~G~Y~C~~~ 452 (581)
T 3o3u_N 373 AQNITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLPNGSLFLPAVGIQDEGIFRCQAM 452 (581)
T ss_dssp CEEEEEETTSCEEECCTTCCSSSSCEEEEEEEETTSSSCEECCSCCSSGGGGTSEECTTSCEEESSCCGGGCEEEEEEEE
T ss_pred hcccceecCCcEEEeeeecCCCCCceEEEEEcCCeeEEEEecccCCCCCcCCcEEEcCCceEEEeccccccCeEEEEEEE
Confidence 34578999999999998866789999999998763211 11456777778899999999999999999999
Q ss_pred ecCceeeeEeEEEEEEcCCeE-EeCCCceEEeCCCeE-EEEEEecc-cCceEEEEEECCeeCCC--CceEEe----c---
Q psy574 82 NVAGTRESTDAVLRVLVKPYI-IRGPKDTTVSASSII-VFECSVGG-DAVLTVHWKRLGSAMPE--DRMSVL----P--- 149 (977)
Q Consensus 82 n~~g~~~s~~~~l~V~~~P~~-~~~p~~~~v~~G~~v-~l~C~v~g-~p~~~i~W~k~~~~l~~--~~~~~~----~--- 149 (977)
|..+......+.|.|..+|.. ...+....+.+|+.. .|.|.+.+ .|.+.|+|++++..+.. .+..+. .
T Consensus 453 n~~~~~~~~~~~l~V~~~~~~p~i~~~~~~~~~~~~~~~l~C~~~~~~P~~~i~W~~~g~~l~~~~~~~~~~~~~~~~~~ 532 (581)
T 3o3u_N 453 NRNGKETKSNYRVRVYQIPGKPEIVDSASELTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPLVPNEKGVSVKEQTRRHPE 532 (581)
T ss_dssp CTTSCEEEEEEEEEEEBCCCCCEEESCCSEECTTSCEEEEEEEEEEEBSCCEEEEEETTEECCTTSTTEEEEEEEEECTT
T ss_pred cCCCceeEEEEEEEEEcCCCCCEEEcCCcccccCCceeEEEEECCCCCCCCeEEEEECCEECCCCCCeEEEEeeeEEcCC
Confidence 998876567789999875432 122223335566554 66999977 69999999999998864 232221 1
Q ss_pred ------cceEEEccCc-cCCCeEEEEEEEeCCe
Q psy574 150 ------SRSLQLSDVR-LEDAGEYVCEAENAVG 175 (977)
Q Consensus 150 ------~~~L~I~~v~-~~D~G~Y~C~a~n~~g 175 (977)
..+|.|.++. .++.|.|+|.|.|...
T Consensus 533 ~g~y~~~s~L~i~~~~~~d~~~~y~C~~~n~~~ 565 (581)
T 3o3u_N 533 TGLFTLQSELMVTPARGGDPRPTFSCSFSPGLP 565 (581)
T ss_dssp TCCEEEEEEEEECCCTTSCSCCCEEEEEECSSC
T ss_pred CceEEEEEEEEEEeccccCCCceEEEEEeccCC
Confidence 1469999998 5558999999999864
No 446
>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H
Probab=99.55 E-value=6.2e-14 Score=145.88 Aligned_cols=175 Identities=17% Similarity=0.226 Sum_probs=116.2
Q ss_pred CCCceEEeCCCeEEEEEEecccC--ceEEEEEECC--ee---C--------------CCCceEEec-----cceEEEccC
Q psy574 105 GPKDTTVSASSIIVFECSVGGDA--VLTVHWKRLG--SA---M--------------PEDRMSVLP-----SRSLQLSDV 158 (977)
Q Consensus 105 ~p~~~~v~~G~~v~l~C~v~g~p--~~~i~W~k~~--~~---l--------------~~~~~~~~~-----~~~L~I~~v 158 (977)
.|....+.+|++++|.|.+.+.+ .+.+.|+|.. .. + ..+|+.+.. +.+|.|.++
T Consensus 6 qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v 85 (232)
T 1dn0_B 6 QWGAGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSV 85 (232)
T ss_dssp EECCCEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred CCCCEEEeCCCcEEEEEEEccccCCCceEEEEEeCCCCCeEEEEEEecCCceeeCCccCCeEEEEEeCCCCEEEEEECCC
Confidence 34566889999999999997764 5789999963 21 1 125666542 238999999
Q ss_pred ccCCCeEEEEEEEeCC--e----eEEEEEEEEEee----CCeEEe-cCCCcEEeeC-CeEEEEEEEecC-CCC-eEEEEE
Q psy574 159 RLEDAGEYVCEAENAV--G----KISASATLTVQM----APIVRE-RPSDLRLEVG-RDAVFLCGIEGS-PPP-STFWML 224 (977)
Q Consensus 159 ~~~D~G~Y~C~a~n~~--g----~~~~~~~L~V~~----~p~~~~-~p~~~~v~~G-~~v~L~C~~~g~-p~~-~i~W~~ 224 (977)
+.+|+|.|.|.+.+.. + .....+.|.|.. +|.+.. .|.. .+..| +.++|.|.+.+. |.+ .+.|++
T Consensus 86 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~-~~~~g~~~v~L~C~~~g~~P~p~~v~W~~ 164 (232)
T 1dn0_B 86 TAADTAVYYCARPPHDTSGHYWNYWGQGTLVTVSSGSASAPTLFPLVSCE-NSPSDTSSVAVGCLAQDFLPDSITFSWKY 164 (232)
T ss_dssp CGGGCEEEEEEECSSTTSCSCCSEECCCEEEEECSSCCBCCEEEEEECC-------CCSEEEEEEEEEEBSSCCEEEEEE
T ss_pred CcccCEEEEEEEecCCcCCchhhhcccceEEEEccCCCCCCceEEecccc-ccCCCCCcEEEEEEEEEEeCCCeEEEEEc
Confidence 9999999999998421 1 223446788874 354443 3332 34578 999999999885 776 999999
Q ss_pred -cCeeeeec---CC-CccccEEEEEccCCceEEEEeeccc--CCCCeEEEEEEEcCCCceeEEEEEEEEC
Q psy574 225 -EGNRSLIY---PG-DRVDNIQAEITSDGMNLLKIQNVSR--TAAPLIILCLGVNAAGSDLARASLTVSG 287 (977)
Q Consensus 225 -~g~~~~~~---~~-~~~~~~~~~~~~~g~s~L~I~~v~~--~d~G~Y~~C~a~n~~g~~~~~~~l~V~~ 287 (977)
+|..+... .. ...+.+... +.|.|..... +|.|.|+ |.|.|..+.......+.|..
T Consensus 165 ~~g~~l~~~~~~~~~~~~~~~~~~------s~L~i~~~~~~~~d~g~yt-C~v~n~~~~~~~~~~i~~~~ 227 (232)
T 1dn0_B 165 KNNSDISSTRGFPSVLRGGKYAAT------SQVLLPSKDVMAGTDEHVV-CKVQHPNGNKEKNVPLPVIA 227 (232)
T ss_dssp TTSCEECCEEECCCEEETTEEEEE------EEEEECTTCC---CCCEEE-EEEECTTCCEEEEEECCC--
T ss_pred CCCCceeeEEECCccccCCcEEEE------EEEEEcHHHhcccCCCeEE-EEEEeCCCCcceeEecCCCC
Confidence 88765320 00 001233322 3789988887 8899999 99999998876666665544
No 447
>1x5l_A Ephrin type-A receptor 8; FN3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=99.55 E-value=1.3e-14 Score=131.69 Aligned_cols=105 Identities=24% Similarity=0.305 Sum_probs=90.0
Q ss_pred eEEeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCcceEEEEecCCcCeEEecCCCCCce
Q psy574 632 RAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIR 711 (977)
Q Consensus 632 ~~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~ 711 (977)
+.++|.+++|. +|.++++...+.++|.|+|++| ...+|.|.+|+|+|+..+........+....++++|.+|+|++.
T Consensus 2 v~~~T~~~~P~-~P~~l~~~~~~~~sv~l~W~~p--~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~ 78 (111)
T 1x5l_A 2 SSGSSGQAAPS-QVVVIRQERAGQTSVSLLWQEP--EQPNGIILEYEIKYYEKDKEMQSYSTLKAVTTRATVSGLKPGTR 78 (111)
T ss_dssp CCCCCSCCCCC-CCCCEECSCBCSSCEEEEECCC--SCCCSCCCEEEEEEEESSSCCSSCEEEEESSSEEEECSCCTTCE
T ss_pred ceEEcCCCCCC-CCceEEEEEcCCCEEEEEECCC--CCCCCEEEEEEEEEEECCCCceeEEEecCCCCEEEEcCCCCCCE
Confidence 56789999997 6789998888899999999999 67799999999999986522223334456789999999999999
Q ss_pred EEEEEEEEcCCCcCCCCCceEEeecCCC
Q psy574 712 YSVSLAATNRAGTGPYSRPALLSLTSGP 739 (977)
Q Consensus 712 Y~~~V~A~~~~G~g~~S~~~~~~t~~~~ 739 (977)
|.|+|+|+|.+|.|++|.++.++|....
T Consensus 79 Y~~~V~A~n~~G~g~~S~~~~~~T~~~~ 106 (111)
T 1x5l_A 79 YVFQVRARTSAGCGRFSQAMEVETGKPS 106 (111)
T ss_dssp EEECEEEEETTEECCCCCCEEEECCCTT
T ss_pred EEEEEEEEeCCcCCCCcccEEEEcCCCC
Confidence 9999999999999999999999998765
No 448
>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*
Probab=99.55 E-value=1.7e-15 Score=158.22 Aligned_cols=167 Identities=14% Similarity=0.195 Sum_probs=111.8
Q ss_pred ccceecccceE--EeCCCcEEEEEECCCCC---CCC-eEEEEeCCEEeecC--------CCceEEEecCcEEEEcCCCCC
Q psy574 6 EEFRVQPKSQR--VAAGDTALLECGPPRGH---PEP-TLVWKKNGHPIDFE--------NSKRLRLVDGTNLAIQDSRKT 71 (977)
Q Consensus 6 ~~~~~~p~~~~--v~~G~~v~L~C~~~~g~---P~~-~v~W~k~g~~l~~~--------~~~r~~~~~~g~L~I~~v~~~ 71 (977)
|.+.+.|.... +.+|++++|.|.+ .+. |.+ .|.|+|++..+... ..+++. ..+.|.|.+++.+
T Consensus 16 P~v~~~pp~~~~~v~~G~~v~L~C~~-~g~~~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~--~~s~L~I~~~~~~ 92 (239)
T 1i1c_A 16 SSVFIFPPKTKDVLGGGLTPKVTCVV-VDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLR--SVSELPIVERDWL 92 (239)
T ss_dssp -CEEEECCCHHHHTTSSSCCEEEEEE-EEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEE--EEEEEECCHHHHH
T ss_pred CEEEEECCChHHhcccCCcEEEEEEE-ecCccCCCCCEEEEEECCccccCcccccceEcCCCcEE--EEEEEEEEhhHcc
Confidence 34444444444 7899999999999 454 766 99999998766311 111221 1347999999999
Q ss_pred CCeEEEEEEEecCceee-eEeEEE--EEEcCCeEEeCCCceEEeCCCeEEEEEEecc-cCc-eEEEEEECCeeCCCC---
Q psy574 72 DDGRYQCVVKNVAGTRE-STDAVL--RVLVKPYIIRGPKDTTVSASSIIVFECSVGG-DAV-LTVHWKRLGSAMPED--- 143 (977)
Q Consensus 72 D~G~Y~C~a~n~~g~~~-s~~~~l--~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~g-~p~-~~i~W~k~~~~l~~~--- 143 (977)
|+|.|+|.+.|..+... ...+.+ .+..+|.+...+.......|+.++|.|.+.| .|. ..|.|+|+|..+...
T Consensus 93 D~g~Y~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~ 172 (239)
T 1i1c_A 93 NGKTFKCKVNSGAFPAPIEKSISKPEGTPRGPQVYTMAPPKEEMTQSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNT 172 (239)
T ss_dssp TTCCEEEEEECSSSSSCEEEEECCCSSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEEC
T ss_pred CCCeEEEEEecccCCCCcEEEEecCCCCCcCCEEEEECCChHHhcCCcEEEEEEEeeeECCCeEEEEEECCEECCCceec
Confidence 99999999999876432 122222 3456777665554433346889999999987 454 489999999988542
Q ss_pred ceEEeccce------EEEccCccCCCeEEEEEEEeCCe
Q psy574 144 RMSVLPSRS------LQLSDVRLEDAGEYVCEAENAVG 175 (977)
Q Consensus 144 ~~~~~~~~~------L~I~~v~~~D~G~Y~C~a~n~~g 175 (977)
+.....+++ |.|.....+|.|.|+|.|.|...
T Consensus 173 ~~~~~~dgt~~~~s~l~v~~~~~~~~g~YtC~v~n~~l 210 (239)
T 1i1c_A 173 PPTMDTDGSYFLYSKLNVKKETWQQGNTFTCSVLHEGL 210 (239)
T ss_dssp CCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred CceECCCCCEEEEEEEEEChhhcCCCCEEEEEEECCCC
Confidence 112234444 33444444579999999999763
No 449
>3bpo_C Interleukin-13 receptor alpha-1 chain; IL4, IL13, IL4R, IL13R, cytokine, glycoprotein, IM response, membrane, phosphoprotein, secreted; HET: NAG; 3.00A {Homo sapiens} PDB: 3bpn_C*
Probab=99.55 E-value=5.6e-13 Score=145.60 Aligned_cols=230 Identities=10% Similarity=-0.016 Sum_probs=141.7
Q ss_pred eEEEeccCCCCCeEEEEEEEc-CCCceEEEEEEEEECCCCCCCcccCCCCCCCCCCCCCCCeEEeeCCCceEEEEEcCCC
Q psy574 345 SLVLTDVTKEDSGEYTCVVKS-PHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGLTLAWSRNNQ 423 (977)
Q Consensus 345 sl~I~~v~~~d~G~Y~C~a~n-~~G~~~~s~~l~v~~~~~~~~~~~~~~~~~~~p~~P~~~~v~~~~~~sv~lsW~~p~~ 423 (977)
...+..+.+.+.+.++..|.+ ..|....+..+..... .....+|.+|.++.+...+.+++.++|.++..
T Consensus 54 ~~~~~~~~~~~~y~~~V~a~~~~~~~g~~s~~~~~~~~----------~~~~~pp~~P~~l~c~~~~~~~~~c~W~~~~~ 123 (314)
T 3bpo_C 54 TRRSIEVPLNERICLQVGSQCSTNESEKPSILVEKCIS----------PPEGDPESAVTELQCIWHNLSYMKCSWLPGRN 123 (314)
T ss_dssp SEEEEECCCSSCEEEEEEECC---------CCEEEEEC----------CCCC-CCSSCEEEEEEEETTTEEEEEEECCC-
T ss_pred cEEEEEEcCCCcEEEEEEEEecCCCCCCCCcCeeeeee----------cCCCCCCCCCEeceEEECCCCeEEEEECCCCC
Confidence 455666777778888888743 3333222222221100 01125678899999998889999999999876
Q ss_pred CCCcccceEEEEEeecCCCCCCCCCCCCcccEEEec---eecCcCeEEEEccC----CCCeEEEEEEEEcCCCCCCCCCC
Q psy574 424 IGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVA---TNVPSPILTVTNLT----VGLTYTFLVRALNSHGLSAPSPL 496 (977)
Q Consensus 424 ~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~---~~~~~~~~~i~~L~----p~t~Y~~~V~a~n~~G~s~~S~~ 496 (977)
. +.+.+|.|.|...... .|..+. .......+.+..+. .++.|.|+|.|.|..|.+..+.
T Consensus 124 ~--~~~~~Y~l~y~~~~~~-----------~~~~C~~~~~~~~~~~c~~~~~~~~~~~~~~y~~~V~a~n~~G~~~~~~- 189 (314)
T 3bpo_C 124 T--SPDTNYTLYYWHRSLE-----------KIHQCENIFREGQYFGCSFDLTKVKDSSFEQHSVQIMVKDNAGKIKPSF- 189 (314)
T ss_dssp ----CCCCEEEEEEESSCS-----------SCEECCCEEEETTEEEEEEECCC--------CCEEEEEEETTSCSCCEE-
T ss_pred C--CCCccEEEEEEeCCCC-----------ccccCcCeecCCCeEEEEECCCCccccceeEEEEEEEEEcCCCceeccc-
Confidence 2 4578999999765322 232221 11223456666665 4789999999999988775432
Q ss_pred CceEEeeccccccccccCCcceeecCCCCCCCcchHHHHhhcccccCCceEEEEEeeEeCCCeEEEEEEecC--CCccce
Q psy574 497 SDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPMTSTSVKLTWEILN--TDYIEG 574 (977)
Q Consensus 497 s~~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~g~~~~~~~~~l~~~~~~~~~~l~~~~~~~tsv~lsW~~p~--~~~i~~ 574 (977)
..+ .......|+ || .++++. ...+++.|+|++|. ...+.+
T Consensus 190 ---~~~-~~~~~v~P~---------pP------------------------~~l~~~-~~~~~l~lsW~~P~~~~~~~l~ 231 (314)
T 3bpo_C 190 ---NIV-PLTSRVKPD---------PP------------------------HIKNLS-FHNDDLYVQWENPQNFISRCLF 231 (314)
T ss_dssp ---EEE-CSSSSEECC---------CC------------------------EEEEEE-EETTEEEEEEECCTTCCGGGEE
T ss_pred ---EEE-ehhheEeeC---------CC------------------------CEEEEE-EcCCcEEEEEeCCCccCCceEE
Confidence 222 111111222 33 677887 77889999999993 445689
Q ss_pred EEEEEEecCCCCCceEEEEe-----------ecCccceEEECCCCCCcEEEEEEEEeec------ce-eCCCCCceEEec
Q psy574 575 VYIYSRGLDPPASVAMLTVL-----------HAGEASGFLVTGLAHYSRYEFFLVPFFG------SV-DGKPSNLRAVRT 636 (977)
Q Consensus 575 Y~v~y~~~~~~~~~~~~~~~-----------~~~~~~~~~i~~L~p~t~Y~~~V~a~n~------~g-~g~~s~~~~~~T 636 (977)
|.|+|+..+ ...|....+. .....+.+.|.+|+|++.|.|+|+|.+. .| .|.+|..+.+.+
T Consensus 232 Yev~y~~~~-~~~w~~~~~~~~~c~~~~~~~~~~~~~~~~l~~L~p~t~Y~~qVra~~~~~~~~~~g~WS~WS~~~~~~~ 310 (314)
T 3bpo_C 232 YEVEVNNSQ-TETHNVFYVQEAKCENPEFERNVENTSCFMVPGVLPDTLNTVRIRVKTNKLCYEDDKLWSNWSQEMSIGK 310 (314)
T ss_dssp EEEEEEC---CCCEEEEEESCCCCCCTTSSCCCSSEEEEEEESCCTTSCEEEEEEEEECTTTSCCCCCCCCCCCCEEESC
T ss_pred EEEEEEECC-CCcceEEecccccccccccccccCCceEEEEccCCCCCEEEEEEEeeecccccCCCCeeCCCCCCeEecc
Confidence 999999876 4567644331 1135678999999999999999999985 34 366777777754
Q ss_pred c
Q psy574 637 L 637 (977)
Q Consensus 637 ~ 637 (977)
.
T Consensus 311 ~ 311 (314)
T 3bpo_C 311 K 311 (314)
T ss_dssp C
T ss_pred c
Confidence 4
No 450
>3v6o_A Leptin receptor; receptor-antibody complex, cytokine receptor, antibody FAB F immunoglobulin fold; HET: NAG; 1.95A {Homo sapiens}
Probab=99.54 E-value=1.7e-13 Score=139.35 Aligned_cols=181 Identities=14% Similarity=0.081 Sum_probs=118.6
Q ss_pred EEEEeeEe-CCCeEEEEEEec-CCCccc-eEEEEEEecCC-CC--------CceEEEEeecCccceEEECCCCCCcEEEE
Q psy574 548 ELTEVKPM-TSTSVKLTWEIL-NTDYIE-GVYIYSRGLDP-PA--------SVAMLTVLHAGEASGFLVTGLAHYSRYEF 615 (977)
Q Consensus 548 ~~l~~~~~-~~tsv~lsW~~p-~~~~i~-~Y~v~y~~~~~-~~--------~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~ 615 (977)
.+|.+..- ....++++|++. .....+ .|.+.|+..+. .. ...............+.|..|..++.|.|
T Consensus 5 ~nlsC~~~~~~~~~~C~W~~g~~~~l~t~~~~l~~~~~~~~c~~~~~~~~~~~~~~C~~~~~~~~~C~~~~~~~~~~Y~~ 84 (206)
T 3v6o_A 5 INISCETDGYLTKMTCRWSTSTIQSLAESTLQLRYHRSSLYCSDIPSIHPISEPKDCYLQSDGFYECIFQPIFLLSGYTM 84 (206)
T ss_dssp CCCEEEECTTSSCEEEEECCCC--------EEEEEEECSSCCCSSCCCCSSCEEECEEECTTSCEEEEECSCCTTSCEEE
T ss_pred EEEEEEECCCCcEEEEEecCCCcCCcccccEEEEEEEcCcCccccccccccCcCCCCCCCCCCCceEEeCcHHhcccEEE
Confidence 46777777 568999999998 333334 68998876542 00 01111112223456889999999999999
Q ss_pred EEEEeecceeCCCCCceEEeccCCCCCCCCceeEEEEe-cCcEEEEEeeCCCCCCCCeeeeEEEEEEEecC-CcceEEEE
Q psy574 616 FLVPFFGSVDGKPSNLRAVRTLECEPSGVPQLTDPVLL-NATSVLLKWKPPPVGTHNGVIRTYQIIVGGGN-NSALINMT 693 (977)
Q Consensus 616 ~V~a~n~~g~g~~s~~~~~~T~~~~P~~~P~~v~~~~~-~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~-~~~~~~~~ 693 (977)
+|.|.|..|.+. |..+.+.+...+.+.||.++++... +.+++.|+|++|. ..+ .++.|+|+|+..+ ...+....
T Consensus 85 ~V~a~N~~G~~~-s~~~~~~~~~~vkp~pP~~l~v~~~~~~~~l~l~W~~P~--~~~-~~l~yev~y~~~~~~~~w~~~~ 160 (206)
T 3v6o_A 85 WIRINHSLGSLD-SPPTCVLPDSVVKPLPPSSVKAEITINIGLLKISWEKPV--FPE-NNLQFQIRYGLSGKEVQWKMYE 160 (206)
T ss_dssp EEEEC---CCEE-CCCEEECGGGGBCCCCCCSCEEEEETTTTEEEEEC-----------CEEEEEEEEESSSSCCCEEEE
T ss_pred EEEEEcCCcccc-CCcccEeecceEcCCCCCceEeEEecCCCeEEEEECCCC--CCC-CcEEEEEEEEECCCCCceEEEe
Confidence 999999988764 6667887777776679999998765 5789999999984 333 4689999999865 23343333
Q ss_pred e-cCCcCeEEecCCCCCceEEEEEEEEcCCCcCCC---CCceE
Q psy574 694 V-SASTPTLLLTNLSAGIRYSVSLAATNRAGTGPY---SRPAL 732 (977)
Q Consensus 694 ~-~~~~~~~~l~~L~p~t~Y~~~V~A~~~~G~g~~---S~~~~ 732 (977)
. ......+.|.+|+|++.|.|+|||.+..|.|.| |+++.
T Consensus 161 ~~~~~~~~~~l~~L~p~t~Y~vqVRa~~~~~~G~WSeWS~~~~ 203 (206)
T 3v6o_A 161 VYDAKSKSVSLPVPDLCAVYAVQVRCKRLDGLGYWSNWSNPAY 203 (206)
T ss_dssp ECC---CEEEECCSCTTSCEEEEEEEEETTSCSCCCCCCCCEE
T ss_pred cccCcceeEEeecCCCCCEEEEEEEEecCCCCCcCCCCCcceE
Confidence 3 223357899999999999999999998777654 55544
No 451
>3lqm_A Interleukin-10 receptor subunit beta; IL-10R2, common chain, cytokine, IL-10, IL-22, IL- 28, IL-29, disulfide bond, glycoprotein, membrane; 2.14A {Homo sapiens}
Probab=99.54 E-value=1.2e-13 Score=139.83 Aligned_cols=181 Identities=12% Similarity=0.041 Sum_probs=132.7
Q ss_pred CCCCCCeEEeeCCCceEEEEEcCCCCCCcccceEEEEEeecCCCCCCCCCCCCcccEEEeceecCcCeEEEEccCCCCeE
Q psy574 399 GPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVGLTY 478 (977)
Q Consensus 399 ~~P~~~~v~~~~~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~i~~L~p~t~Y 478 (977)
.+|.++.+...+. ...|+|.+|... ++. ..|.|+|+.. . .|.........+.+.|.+|.+++.|
T Consensus 3 p~P~nv~~~s~n~-~~iL~W~pp~~~-~~~-v~Y~V~y~~~--~-----------~w~~~c~~~~~~~c~lt~l~~~~~Y 66 (201)
T 3lqm_A 3 PPPENVRMNSVNF-KNILQWESPAFA-KGQ-LTFTAQYLSY--R-----------IFQDKCMQTTLTECDFSSLSKYGDH 66 (201)
T ss_dssp CCCEEEEEEEETT-EEEEEEECCCCS-SSC-CEEEEEEEET--T-----------EEEEEEEEESSSEEECTTSCSSSCE
T ss_pred CCCcccEEEEECC-ceEEEECCCCCC-CCC-eEEEEEEEEC--C-----------CcccCcCccCCCEEECCCCccCCCE
Confidence 4688888876665 467999999873 333 4699999875 1 7887666778899999999999999
Q ss_pred EEEEEEEcCCCCCCCCCCCceEEeeccccccccccCCcceeecCCCCCCCcchHHHHhhcccccCCceEEEEEeeEeCCC
Q psy574 479 TFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPMTST 558 (977)
Q Consensus 479 ~~~V~a~n~~G~s~~S~~s~~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~g~~~~~~~~~l~~~~~~~~~~l~~~~~~~t 558 (977)
.|+|+|.|..|.|.++. . ..... .+..+. || .+++. ...+
T Consensus 67 ~~rV~A~~~~~~S~~s~---~-~f~~~-~~t~~~---------PP-------------------------~v~~~-~~~~ 106 (201)
T 3lqm_A 67 TLRVRAEFADEHSDWVQ---I-TFSPV-DDTIIG---------PP-------------------------GMQVE-VLAD 106 (201)
T ss_dssp EEEEEEEETTEECCCEE---E-EECHH-HHSBCC---------CC-------------------------EEEEE-EETT
T ss_pred EEEEEEecCCCcCccee---e-eeeec-ccCeeC---------CC-------------------------EEEEE-EeCC
Confidence 99999999877776653 1 11000 000011 11 25554 4468
Q ss_pred eEEEEEEec--C-CC---------ccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEeec--ce
Q psy574 559 SVKLTWEIL--N-TD---------YIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFG--SV 624 (977)
Q Consensus 559 sv~lsW~~p--~-~~---------~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~--~g 624 (977)
+|.|+|.+| . ++ .+..|+|.|++.+....+. +. .....+.|.+|+|++.|.|+|+|.+. .+
T Consensus 107 si~v~w~~P~~~~~~~~~~~~~~~~~l~Y~v~y~~~~~~~~~~---~~--~~~~~~~l~~L~p~t~Ycv~V~a~~~~~~~ 181 (201)
T 3lqm_A 107 CLHMRFLAPKIENEYETWTMKNVYNSWTYNVQYWKQGTDEKFQ---IT--PQYDFEVLRNLEPWTTYCVQVRGFLPDRNK 181 (201)
T ss_dssp EEEEEEECCEEECSSCEEEHHHHCTTCEEEEEEEETTCCCCEE---EC--CSSSEEEECSCCTTCEEEEEEEEEETTTTE
T ss_pred EEEEEEcCCCccCCCcccCHHHhCCceEEEEEEEECCCCcEEE---EE--ecCceEEEecCCCCCcEEEEEEEEeccCCC
Confidence 999999999 2 23 3789999999876543321 21 45578999999999999999999997 68
Q ss_pred eCCCCCceEEeccCCC
Q psy574 625 DGKPSNLRAVRTLECE 640 (977)
Q Consensus 625 ~g~~s~~~~~~T~~~~ 640 (977)
.|.+|..+.++|..+.
T Consensus 182 ~g~~S~~~c~~T~~~~ 197 (201)
T 3lqm_A 182 AGEWSEPVCEQTTHDE 197 (201)
T ss_dssp ECCCCCCEEEECCCGG
T ss_pred CCCcCCCEeEEeCCCC
Confidence 8999999999987654
No 452
>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O
Probab=99.54 E-value=3.7e-14 Score=127.30 Aligned_cols=92 Identities=32% Similarity=0.520 Sum_probs=80.7
Q ss_pred cCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCC-CceEEec---cceEEEccCccCCCeEEEEEEEeC
Q psy574 98 VKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPE-DRMSVLP---SRSLQLSDVRLEDAGEYVCEAENA 173 (977)
Q Consensus 98 ~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~-~~~~~~~---~~~L~I~~v~~~D~G~Y~C~a~n~ 173 (977)
.+|.|...|.++.+.+|+++.|.|.+.|.|.+.|.|+|++..+.. .++.+.. ..+|.|.+++.+|+|.|+|.|.|.
T Consensus 12 ~pP~f~~~p~~~~v~~G~~~~l~C~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~ 91 (107)
T 3knb_B 12 SPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRARNA 91 (107)
T ss_dssp EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEECCEETTEEEEEESSCCGGGCEEEEEEEEET
T ss_pred CCCEEEeCCCcEEEeCCCcEEEEEEEEEecCCEEEEEECcccccceeeEEEeecCceEEEEEecCChhhCEEEEEEEEEC
Confidence 478899999999999999999999999999999999999999875 4455442 247999999999999999999999
Q ss_pred CeeEEEEEEEEEeeCC
Q psy574 174 VGKISASATLTVQMAP 189 (977)
Q Consensus 174 ~g~~~~~~~L~V~~~p 189 (977)
.|..+..+.|.|..+|
T Consensus 92 ~G~~~~~~~l~V~~pP 107 (107)
T 3knb_B 92 AGEAYAAAAVTVLEPP 107 (107)
T ss_dssp TEEEEEEEEEEEEC--
T ss_pred CCEEEEEEEEEEEcCC
Confidence 9999999999998765
No 453
>1ujt_A KIAA1568 protein; fibronectin type III domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=99.54 E-value=2.1e-14 Score=130.89 Aligned_cols=112 Identities=26% Similarity=0.390 Sum_probs=96.5
Q ss_pred CcchHHHHhhcccccCCceEEEEEeeEeCCCeEEEEEEec-CCCccceEEEEEEecCC---CCCceEEEEeecCccceEE
Q psy574 528 RGESLRRARQHLQEGGGSLIELTEVKPMTSTSVKLTWEIL-NTDYIEGVYIYSRGLDP---PASVAMLTVLHAGEASGFL 603 (977)
Q Consensus 528 ~g~~~~~~~~~l~~~~~~~~~~l~~~~~~~tsv~lsW~~p-~~~~i~~Y~v~y~~~~~---~~~~~~~~~~~~~~~~~~~ 603 (977)
.|.+..+.+.+|. +..++++.+..+++++|.|+|+++ .++.|.+|+|.|++.+. ...|....+.. ....+++
T Consensus 3 ~g~~~~~~~~~l~---~~~v~l~~~~a~sstsi~vsW~~~~~~g~i~gY~V~Y~~~~~~~~~~~~~~~~v~~-~~~~~~~ 78 (120)
T 1ujt_A 3 SGSSGRQVQKELG---DVLVRLHNPVVLTPTTVQVTWTVDRQPQFIQGYRVMYRQTSGLQATSSWQNLDAKV-PTERSAV 78 (120)
T ss_dssp CCCCCSTHHHHHH---HCCEEECCCCCCBTTEEEEEEEESSCCSSCCEEEEEEEESSSSSTTTCCEEEECCC-TTCCEEE
T ss_pred Cccccchheeeec---ccEEEeeccEEccCceEEEEEccCCCCCcEeeEEEEEEECCCCCCCCccEEEEecC-CCcCEEE
Confidence 4677777777773 457889999999999999999987 77899999999999874 35777655543 5678999
Q ss_pred ECCCCCCcEEEEEEEEeecceeCCCCCceEEeccCCC-CCC
Q psy574 604 VTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVRTLECE-PSG 643 (977)
Q Consensus 604 i~~L~p~t~Y~~~V~a~n~~g~g~~s~~~~~~T~~~~-P~~ 643 (977)
|.+|+|+|.|.|+|+|+|..|.|++|..+.++|.+++ |+.
T Consensus 79 l~~L~p~T~Y~~~V~A~n~~G~Gp~S~~v~~~T~e~v~Ps~ 119 (120)
T 1ujt_A 79 LVNLKKGVTYEIKVRPYFNEFQGMDSESKTVRTTEESGPSS 119 (120)
T ss_dssp EESCCSSEEEEEEEEEESSSCCCCCCCCEEEEECSSCCCCC
T ss_pred ECCCCCCCEEEEEEEEECCCccCCCCCCEEEECCCCCCCCC
Confidence 9999999999999999999999999999999999999 863
No 454
>4go6_B HCF C-terminal chain 1; tandem fibronectin repeat, protein interaction, transcriptio protein binding; 2.70A {Homo sapiens}
Probab=99.54 E-value=1.3e-14 Score=150.65 Aligned_cols=168 Identities=14% Similarity=0.006 Sum_probs=98.9
Q ss_pred CCcccceEEEEEeecCCCCCCCCCCCCcccEEEeceecCcCeEEEEccCCCCeEEEEEEEEcCCCCCCCCCCCceEEeec
Q psy574 425 GSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRG 504 (977)
Q Consensus 425 ~~~~i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n~~G~s~~S~~s~~~~~~~ 504 (977)
.+..+.+|.|++..... .|.........+++++.+|.|++.|.|+|+|.|..|.|.+|......+. .
T Consensus 18 ~~~~Vt~Y~~~~~~~~~------------~~~~~~~~~~~t~~~~~~L~p~t~Y~frV~A~n~~G~g~~s~~~~~~t~-~ 84 (232)
T 4go6_B 18 TNVMVTHYFLPPDDAVP------------SDDDLGTVPDYNQLKKQELQPGTAYKFRVAGINACGRGPFSEISAFKTC-L 84 (232)
T ss_dssp SEEEECEEECCCC------------------------------CEEECCTTCEEEEEEEEEETTEEEEECCCEEEECC-C
T ss_pred CCEEEEEEEEEeeCCCC------------CcEEEEECCCccEEEeCCCCCCCEEEEEEEEEeCCCccccccceeeeec-C
Confidence 35567788887643221 3333434455678999999999999999999999999988765443322 1
Q ss_pred cccccccccCCcceeecCCCCCCCcchHHHHhhcccccCCceEEEEEeeEeCCCeEEEEEEec--CCCccceEEEEEEec
Q psy574 505 TFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPMTSTSVKLTWEIL--NTDYIEGVYIYSRGL 582 (977)
Q Consensus 505 ~~p~~~p~~~~~~~~~~~P~~~~~g~~~~~~~~~l~~~~~~~~~~l~~~~~~~tsv~lsW~~p--~~~~i~~Y~v~y~~~ 582 (977)
..+ | .++. +.....+.++|.|+|++| +++.|.+|+|+|+..
T Consensus 85 ~~~---~---------------------------------~~~~-~~~~~~~~~sv~l~W~~P~~~~G~i~~Y~v~~~~~ 127 (232)
T 4go6_B 85 PGF---P---------------------------------GAPC-AIKISKSPDGAHLTWEPPSVTSGKIIEYSVYLAIQ 127 (232)
T ss_dssp TTS---C---------------------------------CCCE-EEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEC
T ss_pred CCC---C---------------------------------CCCe-eeEEecCCCEEEEEEeCCCCCCCceeeEEEEEEEC
Confidence 111 1 1112 233456789999999999 677999999999877
Q ss_pred CCCCC------------ceEEEEee------cCccceEEECCCCCCcEEEEEEEEeecceeCCCCCceEEeccCCCCC
Q psy574 583 DPPAS------------VAMLTVLH------AGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVRTLECEPS 642 (977)
Q Consensus 583 ~~~~~------------~~~~~~~~------~~~~~~~~i~~L~p~t~Y~~~V~a~n~~g~g~~s~~~~~~T~~~~P~ 642 (977)
+.... |....... ......+.+.+|.+++.|.|+|+|.|..|.|+.|+...+.+....|.
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~~t~Y~frV~A~N~~G~Gp~S~v~t~~~~~~~p~ 205 (232)
T 4go6_B 128 SSQAGGELKSSTPAQLAFMRVYCGPSPSCLVQSSSLSNAHIDYTTKPAIIFRIAARNEKGYGPATQVRWLQETSKDSS 205 (232)
T ss_dssp -------------CCEEEEEEEEESSSEEEEEHHHHTTBCBEESSSEEEEEEEEEECSSCBCCCEEEEEECC------
T ss_pred CCCCcceeeeccCCceeeEEEEeccCceEEEEccccEEeeecCccCCceEEEEEEECCCcCCCCcccEEeccCCCCCC
Confidence 64211 11111110 01112234567999999999999999999999988666666555544
No 455
>1x3d_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=99.53 E-value=5.2e-14 Score=129.27 Aligned_cols=112 Identities=22% Similarity=0.351 Sum_probs=95.2
Q ss_pred eeCCCCCceEEeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCC-cceEEEEecCCcCeEE
Q psy574 624 VDGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNN-SALINMTVSASTPTLL 702 (977)
Q Consensus 624 g~g~~s~~~~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~ 702 (977)
|.|.+|..+.++|...+|. +|.++++...+.++|.|+|++| .+.++.|.+|.|+|+..+. ..+... .....+.++
T Consensus 1 G~s~~S~~~~~~t~~~~P~-~P~~~~~~~~~~~sv~l~W~~p--~~~~~~i~~Y~v~~~~~~~~~~~~~~-~~~~~~~~~ 76 (118)
T 1x3d_A 1 GSSGSSGAEIFTTLSCEPD-IPNPPRIANRTKNSLTLQWKAP--SDNGSKIQNFVLEWDEGKGNGEFCQC-YMGSQKQFK 76 (118)
T ss_dssp CCCCCCCCCCCCCCCSCCC-CCCCCEEEEEETTEEEEECCCC--CCCSSCEEEEEEEECTTTSSSCCEEE-EEESCSEEE
T ss_pred CCCCCCcCEEEEcCCCCCc-CCCCcEEeccCCCEEEEEECCC--CCCCCcceEEEEEEecCCCCCCeEEe-eccCCcEEE
Confidence 5677889999999999986 7889999999999999999999 5668899999999987553 333332 334568999
Q ss_pred ecCCCCCceEEEEEEEEcCCCcCCCCCceEEeecCCC
Q psy574 703 LTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGP 739 (977)
Q Consensus 703 l~~L~p~t~Y~~~V~A~~~~G~g~~S~~~~~~t~~~~ 739 (977)
|.+|+|++.|.|+|+|+|.+|.|.+|.++.+.|....
T Consensus 77 v~~L~p~t~Y~frV~A~n~~G~s~~S~~~~~~T~~~~ 113 (118)
T 1x3d_A 77 ITKLSPAMGCKFRLSARNDYGTSGFSEEVLYYTSGCS 113 (118)
T ss_dssp EESCCTTCEEEEECCEEESSCBCCCCCCEEEECSCCC
T ss_pred eCCCCCCCEEEEEEEEEECCCCCCCccCEEEEcCCCC
Confidence 9999999999999999999999999999999887654
No 456
>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Probab=99.53 E-value=2.5e-14 Score=148.69 Aligned_cols=167 Identities=16% Similarity=0.192 Sum_probs=114.4
Q ss_pred cceecccceEEeCCCcEEEEEECCCCC--CCCeEEEEeCC--E---Eee-c---------C-CCceEEEecC-----cEE
Q psy574 7 EFRVQPKSQRVAAGDTALLECGPPRGH--PEPTLVWKKNG--H---PID-F---------E-NSKRLRLVDG-----TNL 63 (977)
Q Consensus 7 ~~~~~p~~~~v~~G~~v~L~C~~~~g~--P~~~v~W~k~g--~---~l~-~---------~-~~~r~~~~~~-----g~L 63 (977)
.+...|..+.+.+|++|+|.|.+ .+. +.+.|.|+|.. . .+- . . ..+|+.+..+ .+|
T Consensus 3 ~v~q~p~~v~~~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L 81 (230)
T 1ypz_F 3 KLEQPEISISRPRDETAQISCKV-FIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSIL 81 (230)
T ss_dssp SEECSCSEEEEETTSCEEEEEEE-CCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEE
T ss_pred cccccCCEEEEeCCCcEEEEEEe-eccccCccEEEEEEECCCCCCEEEEEEecCCeeecCcccCCeEEEEEcCCCCEEEE
Confidence 35667888999999999999998 443 56789999842 1 110 0 1 3568877632 279
Q ss_pred EEcCCCCCCCeEEEEEEEec--Cc-eeeeEeEEEEEEc---------CCeE-EeCCCceEEeCCCeEEEEEEeccc-Cc-
Q psy574 64 AIQDSRKTDDGRYQCVVKNV--AG-TRESTDAVLRVLV---------KPYI-IRGPKDTTVSASSIIVFECSVGGD-AV- 128 (977)
Q Consensus 64 ~I~~v~~~D~G~Y~C~a~n~--~g-~~~s~~~~l~V~~---------~P~~-~~~p~~~~v~~G~~v~l~C~v~g~-p~- 128 (977)
.|.+++.+|+|.|.|.+.+. .. ......+.|.|.. +|.. +..|....+.+|+.++|.|.+.|. |.
T Consensus 82 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~l~~~~~p~~~v~~p~~~~v~~g~~~~L~C~~~g~~P~~ 161 (230)
T 1ypz_F 82 TIYSLEEEDEAIYYCSYGEGSSGFHKVFAEGTKLIVIPSDKRLDADISPKPTIFLPSVAETNLHKTGTYLCLLEAFFPDV 161 (230)
T ss_dssp EECSCCGGGCSEEEEEECCTTTCCCCEECSCEEEEEECCCTTCCSCCSCCCCEECCCHHHHHHHSCEEEEEEEEEESSCC
T ss_pred EECcCChhhCEEEEEEEECCCCCcccccCCCEEEEEecccccCcccCCCCceEECCCchhhccCCcceEEEEEeeecCCC
Confidence 99999999999999999874 11 1122345788862 2321 222444455679999999999875 75
Q ss_pred eEEEEEE-CCeeCCCCc---eE-----EeccceEEEccCccCCCeEEEEEEEeCCee
Q psy574 129 LTVHWKR-LGSAMPEDR---MS-----VLPSRSLQLSDVRLEDAGEYVCEAENAVGK 176 (977)
Q Consensus 129 ~~i~W~k-~~~~l~~~~---~~-----~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~ 176 (977)
+.|.|++ ++..+.... .. ......|.|..... | |.|+|.|.|....
T Consensus 162 ~~v~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~-~~ytC~v~~~~~~ 216 (230)
T 1ypz_F 162 IRVYWKEKDGNTILDSQEGDTLKTNDTYMKFSWLTVPERAM-G-KEHRCIVKHENNK 216 (230)
T ss_dssp CEEEEECTTSSCBCCCEECCCEEETTEEEEEEEEEECGGGT-T-SCEEEEEECSSCT
T ss_pred eEEEEEccCCeEccccccceeecCCCCEEEEEEEEEEhhhC-C-CEEEEEEEECCCC
Confidence 5999999 776664321 11 11124688888775 5 9999999997653
No 457
>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B
Probab=99.53 E-value=1.6e-13 Score=141.52 Aligned_cols=164 Identities=19% Similarity=0.295 Sum_probs=115.9
Q ss_pred CCCceEEeCCCeEEEEEEeccc--CceEEEEEECCe--eC--------------------CCCceEEecc-----ceEEE
Q psy574 105 GPKDTTVSASSIIVFECSVGGD--AVLTVHWKRLGS--AM--------------------PEDRMSVLPS-----RSLQL 155 (977)
Q Consensus 105 ~p~~~~v~~G~~v~l~C~v~g~--p~~~i~W~k~~~--~l--------------------~~~~~~~~~~-----~~L~I 155 (977)
.|....+.+|++++|.|.+.+. +.+.+.|+|... .. ..+|+.+..+ .+|.|
T Consensus 6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I 85 (221)
T 3m8o_H 6 ESGGGLVQPGGSLKLSCAASGFTLSGSNVHWVRQASGKGLEWVGRIKRNAESDATAYAASMRGRLTISRDDSKNTAFLQM 85 (221)
T ss_dssp EESCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECCGGGTTCEEECGGGTTSEEEEEEGGGTEEEEEE
T ss_pred ccCCEEEcCCCCEEEEEEcccccccccEEEEEEECCCCCcEEEEEEcccccCcccccCccccccEEEEecCCCCEEEEEE
Confidence 3456778999999999999764 367899998531 10 1245555433 26999
Q ss_pred ccCccCCCeEEEEEEEeCC--eeEEEEEEEEEe----eCCeEE-ecCCCcEEeeCCeEEEEEEEec-CCC-C-eEEEEEc
Q psy574 156 SDVRLEDAGEYVCEAENAV--GKISASATLTVQ----MAPIVR-ERPSDLRLEVGRDAVFLCGIEG-SPP-P-STFWMLE 225 (977)
Q Consensus 156 ~~v~~~D~G~Y~C~a~n~~--g~~~~~~~L~V~----~~p~~~-~~p~~~~v~~G~~v~L~C~~~g-~p~-~-~i~W~~~ 225 (977)
.+++.+|+|.|.|.+.+.. ......+.|.|. .+|.+. ..+... .+|+.++|.|.+.+ .|. + .+.|+++
T Consensus 86 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~--~~g~~v~L~C~~~~~~P~~~~~v~W~~~ 163 (221)
T 3m8o_H 86 NSLKSDDTAMYYCVIRGDVYNRQWGQGTLVTVSSASPTSPKVFPLSLCST--QPDGNVVIACLVQGFFPQEPLSVTWSES 163 (221)
T ss_dssp CSCCGGGCEEEEEEEESCTTCCCBBCCEEEEECSCCCBCCEEEEEECCSC--CCTTEEEEEEEEEEEBSSCSEEEEESCC
T ss_pred CCCCHHHCEEEEEEEECCChhheECCCEEEEEecCCCCCCeEEEecCccc--ccCCCEEEEEEEEeeECCCCEEEEEEEC
Confidence 9999999999999999863 223344567775 345554 334443 78999999999988 665 3 8999999
Q ss_pred CeeeeecCC-----CccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCce
Q psy574 226 GNRSLIYPG-----DRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSD 277 (977)
Q Consensus 226 g~~~~~~~~-----~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~ 277 (977)
|..+..... ...+++.+. +.|.|..++..|.|.|+ |.|.|..+..
T Consensus 164 g~~~~~~~~~~~~~~~~~~~~~~------s~L~i~~~~~~d~g~yt-C~v~~~~~~~ 213 (221)
T 3m8o_H 164 GQGVTARNFPPSQDASGDLYTTS------SQLTLPATQCLAGKSVT-CHVKHYTNPS 213 (221)
T ss_dssp STTCEEEECCCEECSSSSCEEEE------EEEEEEGGGSCTTCEEE-EEEEETTSCC
T ss_pred CEECceEEcCceeeCCCCcEEEE------EEEEECHHHcCCCCeEE-EEEEECCCCc
Confidence 876532110 122334333 27999999999999999 9999987654
No 458
>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*
Probab=99.53 E-value=1.4e-14 Score=151.37 Aligned_cols=170 Identities=14% Similarity=0.204 Sum_probs=116.0
Q ss_pred EEeCCCceE-EeCCCeEEEEEEeccc---Cce-EEEEEECCeeCCCCce---------EEeccceEEEccCccCCCeEEE
Q psy574 102 IIRGPKDTT-VSASSIIVFECSVGGD---AVL-TVHWKRLGSAMPEDRM---------SVLPSRSLQLSDVRLEDAGEYV 167 (977)
Q Consensus 102 ~~~~p~~~~-v~~G~~v~l~C~v~g~---p~~-~i~W~k~~~~l~~~~~---------~~~~~~~L~I~~v~~~D~G~Y~ 167 (977)
+...|.... +.+|++++|.|.+.|. |.+ .|.|+|++..+..... .......|.|.+++.+|+|.|+
T Consensus 19 ~~~pp~~~~~v~~G~~v~L~C~~~g~~~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~ 98 (239)
T 1i1c_A 19 FIFPPKTKDVLGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKTFK 98 (239)
T ss_dssp EEECCCHHHHTTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEE
T ss_pred EEECCChHHhcccCCcEEEEEEEecCccCCCCCEEEEEECCccccCcccccceEcCCCcEEEEEEEEEEhhHccCCCeEE
Confidence 344444444 7899999999999876 765 8999999876643210 1112347999999999999999
Q ss_pred EEEEeCCee--EEEEEEE--EEeeCCeEEecCCCcEEeeCCeEEEEEEEecC-CC-CeEEEEEcCeeeeecCCCccccEE
Q psy574 168 CEAENAVGK--ISASATL--TVQMAPIVRERPSDLRLEVGRDAVFLCGIEGS-PP-PSTFWMLEGNRSLIYPGDRVDNIQ 241 (977)
Q Consensus 168 C~a~n~~g~--~~~~~~L--~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g~-p~-~~i~W~~~g~~~~~~~~~~~~~~~ 241 (977)
|.+.|..+. ....+.+ .+..+|.+...+.......|+.++|.|.+.|. |. ..|.|+|+|..+.. .....
T Consensus 99 C~~~~~~~~~~~~~~v~~~~~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~-----~~~~~ 173 (239)
T 1i1c_A 99 CKVNSGAFPAPIEKSISKPEGTPRGPQVYTMAPPKEEMTQSQVSITCMVKGFYPPDIYTEWKMNGQPQEN-----YKNTP 173 (239)
T ss_dssp EEEECSSSSSCEEEEECCCSSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSS-----EEECC
T ss_pred EEEecccCCCCcEEEEecCCCCCcCCEEEEECCChHHhcCCcEEEEEEEeeeECCCeEEEEEECCEECCC-----ceecC
Confidence 999998775 2333333 44577887766655433458899999999884 44 38999999987531 11111
Q ss_pred EEEccCCc----eEEEEeecccCCCCeEEEEEEEcCCCce
Q psy574 242 AEITSDGM----NLLKIQNVSRTAAPLIILCLGVNAAGSD 277 (977)
Q Consensus 242 ~~~~~~g~----s~L~I~~v~~~d~G~Y~~C~a~n~~g~~ 277 (977)
.....+|. +.|.|......|.|.|+ |.|.|.....
T Consensus 174 ~~~~~dgt~~~~s~l~v~~~~~~~~g~Yt-C~v~n~~l~~ 212 (239)
T 1i1c_A 174 PTMDTDGSYFLYSKLNVKKETWQQGNTFT-CSVLHEGLEN 212 (239)
T ss_dssp CEECTTSCEEEEEEEEEEHHHHHTTCCEE-EEEECTTSGG
T ss_pred ceECCCCCEEEEEEEEEChhhcCCCCEEE-EEEECCCCCC
Confidence 11122332 24566666566899999 9999987653
No 459
>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A
Probab=99.53 E-value=7.4e-14 Score=146.16 Aligned_cols=172 Identities=19% Similarity=0.241 Sum_probs=117.9
Q ss_pred eEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECC--------------eeC----CCCceEEec----cceEEEccC
Q psy574 101 YIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLG--------------SAM----PEDRMSVLP----SRSLQLSDV 158 (977)
Q Consensus 101 ~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~--------------~~l----~~~~~~~~~----~~~L~I~~v 158 (977)
.+...|..+.+.+|++++|.|.+.+ +.+.+.|+|.. ... ..+|+.+.. +.+|.|.++
T Consensus 4 ~v~~~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v 82 (240)
T 3q5y_A 4 GVVQSPRHIIKEKGGRSVLTCIPIS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSAL 82 (240)
T ss_dssp CCEEECSEEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSC
T ss_pred ccccCcceeeecCCCcEEEEEEeCC-CCceEEEEEECCCCCCEEEEEEcCCccccCcccCCeEEEEeCCCCEEEEEECcC
Confidence 3455677889999999999999976 77899999931 111 124555543 347999999
Q ss_pred ccCCCeEEEEEEEeC---CeeEEEEEEEEEe------eCCeEEe-cCCCcEEeeCCeEEEEEEEec-CCCC-eEEEEEcC
Q psy574 159 RLEDAGEYVCEAENA---VGKISASATLTVQ------MAPIVRE-RPSDLRLEVGRDAVFLCGIEG-SPPP-STFWMLEG 226 (977)
Q Consensus 159 ~~~D~G~Y~C~a~n~---~g~~~~~~~L~V~------~~p~~~~-~p~~~~v~~G~~v~L~C~~~g-~p~~-~i~W~~~g 226 (977)
+.+|+|.|+|.+.+. .......+.|.|. .+|.+.. .+....+.+|+.++|.|.+.+ .|.+ .+.|+++|
T Consensus 83 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~g 162 (240)
T 3q5y_A 83 ELEDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNG 162 (240)
T ss_dssp CGGGCEEEEEEEESSTTBCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETT
T ss_pred ChhHCEEEEEEEccCCCcceEEcCCEEEEEeccccCCCCCeeEEeCCchhhcccCCceEEEEEEeeEECCCeEEEEEECC
Confidence 999999999999832 1223445567776 4565554 344556677999999999988 5656 78999999
Q ss_pred eeeeecCCCccccEEEEEccCCc----eEEEEeecccCC-CCeEEEEEEEcCCCce
Q psy574 227 NRSLIYPGDRVDNIQAEITSDGM----NLLKIQNVSRTA-APLIILCLGVNAAGSD 277 (977)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~g~----s~L~I~~v~~~d-~G~Y~~C~a~n~~g~~ 277 (977)
..+..... ........ .++. +.|.|.....+| .|.|+ |.|.|.....
T Consensus 163 ~~l~~~~~-~~~~~~~~--~~g~~~~~s~L~i~~~~~~d~~g~Yt-C~v~~~~~~~ 214 (240)
T 3q5y_A 163 KEVHSGVS-TDPQAYKE--SNYSYSLSSRLRVSATFWHNPRNHFR-CQVQFHGLSE 214 (240)
T ss_dssp EEECTTEE-ECSSCEEE--ETTEEEEEEEEEEEHHHHSCTTCEEE-EEEEECCBCT
T ss_pred EECcCcEe-cCCceeeC--CCCCEEEEEEEEECHHHhccCCCEEE-EEEEcCCCCC
Confidence 87632100 00000111 1232 259999999998 67999 9999876543
No 460
>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*
Probab=99.52 E-value=1.5e-14 Score=150.66 Aligned_cols=193 Identities=15% Similarity=0.174 Sum_probs=115.4
Q ss_pred eEEEEEEEecCceeeeEeEEEEEEcCCeEEeCCCceE-EeCCCeEEEEEEecccC----ceEEEEEECCeeCCCCce---
Q psy574 74 GRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTT-VSASSIIVFECSVGGDA----VLTVHWKRLGSAMPEDRM--- 145 (977)
Q Consensus 74 G~Y~C~a~n~~g~~~s~~~~l~V~~~P~~~~~p~~~~-v~~G~~v~l~C~v~g~p----~~~i~W~k~~~~l~~~~~--- 145 (977)
|.|.|..++..+. -.....+..++.++..|.... +..|+.++|.|.+.|.. ...|+|+|+|..+.....
T Consensus 1 ~~~~~~~~~~~~~---c~~~~~~~~P~v~i~~ps~~~~l~~g~~~~L~C~v~g~~p~P~~i~v~W~k~g~~l~~~~~~~~ 77 (240)
T 4acp_A 1 GTKSCDKTHTCPP---CPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPR 77 (240)
T ss_dssp -------------------------CEEEEECCCHHHHHSSSSCCEEEEEEESCCC--CCCEEEEEETTEEECCCEECCC
T ss_pred CceeeeeeecCCC---CCccccCCCCEEEEECcChHHhcccCCCcEEEEEEeccccCCCccEEEEEECCcccCCceeccc
Confidence 7899999886552 122222334445566666665 66799999999998753 348999999988753211
Q ss_pred ------EEeccceEEEccCccCCCeEEEEEEEeCCee--EEEEEEE--EEeeCCeEEecCCCcEEeeCCeEEEEEEEec-
Q psy574 146 ------SVLPSRSLQLSDVRLEDAGEYVCEAENAVGK--ISASATL--TVQMAPIVRERPSDLRLEVGRDAVFLCGIEG- 214 (977)
Q Consensus 146 ------~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~--~~~~~~L--~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g- 214 (977)
.+.....|.|.....+|.|.|+|.|.+..+. ....+.+ .+..+|.+.+.+.......|+.++|.|.+.+
T Consensus 78 ~~~~~g~~~~~s~L~i~~~~~~d~~~YtC~v~h~~~~~~~~~~i~~~~~~~~~P~V~v~~~~~~~~~g~~~~L~C~~~gf 157 (240)
T 4acp_A 78 EEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGF 157 (240)
T ss_dssp EEC---CEEEEEEEECCHHHHHHTCCEEEEEECC----CEEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEE
T ss_pred eECCCCeEEEEEEEEEechhccCCCEEEEEEEcCCCCccccccccccCCCCCCCEEEEECCChHHhcCCceEEEEEEeEE
Confidence 0111246788777788899999999998763 3444432 2346788777666554445999999999998
Q ss_pred CCCC-eEEEEEcCeeeeecCC-----CccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCc
Q psy574 215 SPPP-STFWMLEGNRSLIYPG-----DRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGS 276 (977)
Q Consensus 215 ~p~~-~i~W~~~g~~~~~~~~-----~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~ 276 (977)
+|.+ .+.|+++|..+..... ...+.|++. +.|.|...+..|.|.|+ |.+.+..-.
T Consensus 158 ~P~~i~v~W~k~g~~~~~~~~~~~~~~~dgt~~~~------s~L~v~~~~~~~~~~yt-C~V~h~~l~ 218 (240)
T 4acp_A 158 YPSDIAVEWESNGQPENNYKATPPVLDSDGSFFLY------SKLTVDKSRWQQGNVFS-CSVMHEALH 218 (240)
T ss_dssp BSSCCEEEEEETTEECSSEEECCCEECTTSCEEEE------EEEEEEHHHHHTTCCEE-EEEECTTSG
T ss_pred eCCCcEEEEEECCEECCCcCccCceECCCCCEEEE------EEEEEChHHhCCCCEEE-EEEEECCCC
Confidence 4554 7999999987521100 112223222 36777777777899999 999998643
No 461
>3nl4_H Antigen binding fragment,immunoglobulin IGG - HEA; FAB, rabbit, conformation-specific, amyloid, immune system; 1.54A {Oryctolagus cuniculus} PDB: 4hbc_H
Probab=99.52 E-value=2.2e-14 Score=147.41 Aligned_cols=171 Identities=16% Similarity=0.253 Sum_probs=111.0
Q ss_pred eCCCceEEeCCCeEEEEEEeccc--CceEEEEEECCe--e---C--------------CCCceEEec---cceEEEccCc
Q psy574 104 RGPKDTTVSASSIIVFECSVGGD--AVLTVHWKRLGS--A---M--------------PEDRMSVLP---SRSLQLSDVR 159 (977)
Q Consensus 104 ~~p~~~~v~~G~~v~l~C~v~g~--p~~~i~W~k~~~--~---l--------------~~~~~~~~~---~~~L~I~~v~ 159 (977)
..|....+.+|++++|.|.+.+. +.+.+.|+|... . + ..+|+.+.. +.+|.|.+++
T Consensus 4 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~ 83 (215)
T 3nl4_H 4 EESGGRLVTPGTPLTLACTVSGFSLNTYSMFWVRQAPGKGLQWIGIISNFGVIYYATWAKGRFTISKTSTTVDLKITSPT 83 (215)
T ss_dssp EEECCCEECTTCCEEEEEEEESSCTTTCCEEEEEECTTSCEEEEEEECTTCCEEECGGGTTTEEEEECSSEEEEEESSCC
T ss_pred EcCCCEEEcCCCcEEEEEEecCcccCCCeEEEEEECCCCCeEEEEEEecCCccccCCcccCCEEEEeeCCEEEEEECCCC
Confidence 34567789999999999999763 467899998531 1 1 123444432 2359999999
Q ss_pred cCCCeEEEEEEEeCCee----EEEEEEEEEe----eCCeEEecCCCcEEeeCCeEEEEEEEecCCC--CeEEEEEcCeee
Q psy574 160 LEDAGEYVCEAENAVGK----ISASATLTVQ----MAPIVRERPSDLRLEVGRDAVFLCGIEGSPP--PSTFWMLEGNRS 229 (977)
Q Consensus 160 ~~D~G~Y~C~a~n~~g~----~~~~~~L~V~----~~p~~~~~p~~~~v~~G~~v~L~C~~~g~p~--~~i~W~~~g~~~ 229 (977)
.+|+|.|.|.+.+..+. ....+.|.|. .+|.+...+....+.+|+.++|.|.+.+.++ ..+.|++++..+
T Consensus 84 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~l~C~~~~~~p~~~~v~W~~~g~~~ 163 (215)
T 3nl4_H 84 TEDTATYFCVRKYGSEWGGDLWGPGTLVTVSSGQPKAPSVFPLAPCCGDTPSSTVTLGCLVKGYLPEPVTVTWNSGTLTN 163 (215)
T ss_dssp GGGCEEEEEEEECSSSSCEEEECCCEEEEECSSCCBCCEEEEECCCTTCCC--CEEEEEEEEEEBSSCCEEEEGGGTBCT
T ss_pred cccCEEEEEEEecCCCccceEEcCCEEEEEeCCCcCCCEEEEecCCccccCCCcEEEEEEEeeeeCCCeEEEEeeCCEEC
Confidence 99999999999987542 3445678886 5666664455556678999999999988644 367899998643
Q ss_pred eecCCCccccEEEEEccCCceEEEE---eecccCCCCeEEEEEEEcCCCceeEEEEEE
Q psy574 230 LIYPGDRVDNIQAEITSDGMNLLKI---QNVSRTAAPLIILCLGVNAAGSDLARASLT 284 (977)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~g~s~L~I---~~v~~~d~G~Y~~C~a~n~~g~~~~~~~l~ 284 (977)
.... ... . ...++ .+.+ ..+...| |.|+ |.|.|..+.....+.|.
T Consensus 164 ~~~~----~~~-~-~~~~g--~~~~~s~l~v~~~d-g~yt-C~v~~~~~~~~~~~~l~ 211 (215)
T 3nl4_H 164 GVRT----FPS-V-RQSSG--LYSLSSVVSVTSSS-QPVT-CNVAHPATNTKVDKTVA 211 (215)
T ss_dssp TEEE----CCC-E-ECTTS--CEEEEEEEEECC----CCE-EEEEEGGGTEEEEEECC
T ss_pred CeEe----cCc-e-ECCCC--CEEEEEEEEEeccC-CEEE-EEEEeCCCCcceEEecC
Confidence 2111 000 1 11123 2222 4455667 9999 99999988766555543
No 462
>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O
Probab=99.52 E-value=2.7e-14 Score=128.15 Aligned_cols=92 Identities=33% Similarity=0.556 Sum_probs=77.9
Q ss_pred cccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecC---cEEEEcCCCCCCCeEEEEEEE
Q psy574 5 REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG---TNLAIQDSRKTDDGRYQCVVK 81 (977)
Q Consensus 5 ~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~---g~L~I~~v~~~D~G~Y~C~a~ 81 (977)
.|.|...|.++.+.+|++++|.|.+ .|.|.+.|.|+|||+.|... .|+.+..+ .+|.|.+++.+|+|.|+|+|.
T Consensus 13 pP~f~~~p~~~~v~~G~~~~l~C~~-~G~P~p~v~W~k~g~~l~~~--~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~ 89 (107)
T 3knb_B 13 PPCFLRFPRPVRVVSGAEAELKCVV-LGEPPPVVVWEKGGQQLAAS--ERLSFPADGAEHGLLLTAALPTDAGVYVCRAR 89 (107)
T ss_dssp EEEEEECCCCEEEETTSCEEEEEEE-EEESCCEEEEEETTEECCCC--SSEECCEETTEEEEEESSCCGGGCEEEEEEEE
T ss_pred CCEEEeCCCcEEEeCCCcEEEEEEE-EEecCCEEEEEECcccccce--eeEEEeecCceEEEEEecCChhhCEEEEEEEE
Confidence 4789999999999999999999999 89999999999999999543 45555433 369999999999999999999
Q ss_pred ecCceeeeEeEEEEEEcCC
Q psy574 82 NVAGTRESTDAVLRVLVKP 100 (977)
Q Consensus 82 n~~g~~~s~~~~l~V~~~P 100 (977)
|..|... ..+.|.|..+|
T Consensus 90 N~~G~~~-~~~~l~V~~pP 107 (107)
T 3knb_B 90 NAAGEAY-AAAAVTVLEPP 107 (107)
T ss_dssp ETTEEEE-EEEEEEEEC--
T ss_pred ECCCEEE-EEEEEEEEcCC
Confidence 9999754 56889998765
No 463
>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Probab=99.52 E-value=3.1e-14 Score=126.09 Aligned_cols=92 Identities=23% Similarity=0.457 Sum_probs=80.3
Q ss_pred ccccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecC---cEEEEcCCCCCCCeEEEEEE
Q psy574 4 LREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG---TNLAIQDSRKTDDGRYQCVV 80 (977)
Q Consensus 4 l~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~---g~L~I~~v~~~D~G~Y~C~a 80 (977)
..|.|...|.++.+.+|++++|.|.+ .|.|.|.|.|+|||+.|......|+.+... .+|.|.+++.+|+|.|+|.|
T Consensus 4 ~PP~i~~~p~~~~v~~G~~~~l~C~~-~g~P~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a 82 (100)
T 3knb_A 4 IPPKIEALPSDISIDEGKVLTVACAF-TGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSL 82 (100)
T ss_dssp EEEEECCCCSEEEEETTSEEEEEEEE-EEESCCEEEEEETTEECCTTGGGTEEEEECSSEEEEEESSCCGGGCEEEEEEE
T ss_pred CCCEEEeCCCcEEEeCCCeEEEEEEE-EEecCCEEEEEECceEeeeeccceeeeecccceEEEEEcCCCccCCEEEEEEE
Confidence 46889999999999999999999999 899999999999999997666667776643 36999999999999999999
Q ss_pred EecCceeeeEeEEEEEE
Q psy574 81 KNVAGTRESTDAVLRVL 97 (977)
Q Consensus 81 ~n~~g~~~s~~~~l~V~ 97 (977)
.|..|.. +..+.|.|+
T Consensus 83 ~N~~G~~-~~~~~l~V~ 98 (100)
T 3knb_A 83 GNEFGSD-SATVNIHIR 98 (100)
T ss_dssp EETTEEE-EEEEEEEEE
T ss_pred EECCCEE-EEEEEEEEE
Confidence 9999974 466788876
No 464
>2ed7_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=9e-14 Score=127.86 Aligned_cols=105 Identities=25% Similarity=0.397 Sum_probs=88.5
Q ss_pred eEEeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCC-cceEEEEecCCcCeEEecCCCCCc
Q psy574 632 RAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNN-SALINMTVSASTPTLLLTNLSAGI 710 (977)
Q Consensus 632 ~~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~~~l~~L~p~t 710 (977)
..+.|.+++|. +|.++++...+.++|.|+|++| ...+|.|.+|.|+|+..+. ............+.++|.+|+|++
T Consensus 9 ~~~~~~~~~P~-~P~~l~~~~~~~~sv~l~W~~p--~~~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t 85 (119)
T 2ed7_A 9 PAIPSSSVLPS-APRDVVPVLVSSRFVRLSWRPP--AEAKGNIQTFTVFFSREGDNRERALNTTQPGSLQLTVGNLKPEA 85 (119)
T ss_dssp SSCCCSSSSCC-CCSCCEEEEECSSCEEEECCCC--SCCSSCEEEEEEEEEESSCCCCEEEECCCTTCCEEEECSCCSSS
T ss_pred ccCCCCCCCCc-CCcceEEEecCCCEEEEEEeCC--CCCCCcEEEEEEEEEeCCCCcceeeEeecCCceEEEeCCCCCCC
Confidence 44567788885 8899999999999999999999 5678999999999988653 333333345678999999999999
Q ss_pred eEEEEEEEEcCCCcCCCCCceEEeecCCC
Q psy574 711 RYSVSLAATNRAGTGPYSRPALLSLTSGP 739 (977)
Q Consensus 711 ~Y~~~V~A~~~~G~g~~S~~~~~~t~~~~ 739 (977)
.|.|+|+|+|.+|.|++|+++.++|....
T Consensus 86 ~Y~~~V~A~n~~G~g~~S~~~~~~T~~~~ 114 (119)
T 2ed7_A 86 MYTFRVVAYNEWGPGESSQPIKVATQPES 114 (119)
T ss_dssp EEEECCEEEESSCBCSCCCCEEEECCCCS
T ss_pred EEEEEEEEEcCCccCCCcCCEEEEeCCCC
Confidence 99999999999999999999999887654
No 465
>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...
Probab=99.52 E-value=3e-14 Score=145.45 Aligned_cols=167 Identities=16% Similarity=0.211 Sum_probs=107.4
Q ss_pred eCCCceE-EeCCCeEEEEEEecccC----ceEEEEEECCeeCCCCc---eEEeccceEEEc------cCccCCCeEEEEE
Q psy574 104 RGPKDTT-VSASSIIVFECSVGGDA----VLTVHWKRLGSAMPEDR---MSVLPSRSLQLS------DVRLEDAGEYVCE 169 (977)
Q Consensus 104 ~~p~~~~-v~~G~~v~l~C~v~g~p----~~~i~W~k~~~~l~~~~---~~~~~~~~L~I~------~v~~~D~G~Y~C~ 169 (977)
..|.... +.+|++++|.|.+.|.+ ...|.|+|++..+.... .....++.|.+. ....+|+|.|+|.
T Consensus 7 ~pps~~~~~~~G~~v~L~C~~~g~~p~~~~~~v~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~~d~g~Y~C~ 86 (207)
T 1l6x_A 7 FPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCK 86 (207)
T ss_dssp ECCCHHHHHCTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEE
T ss_pred eCcChHHheecCCceEEEEEEecccCCCCCeEEEEEECCccccCcccCCceeccCCcEEEEEEEEEEHHHccCCceEEEE
Confidence 3443333 37999999999998765 34999999998765431 122234455443 3334459999999
Q ss_pred EEeCCeeE--EEEEEE--EEeeCCeEEecCCCcEEeeCCeEEEEEEEecC-CC-CeEEEEEcCeeeeecCCCccccEEEE
Q psy574 170 AENAVGKI--SASATL--TVQMAPIVRERPSDLRLEVGRDAVFLCGIEGS-PP-PSTFWMLEGNRSLIYPGDRVDNIQAE 243 (977)
Q Consensus 170 a~n~~g~~--~~~~~L--~V~~~p~~~~~p~~~~v~~G~~v~L~C~~~g~-p~-~~i~W~~~g~~~~~~~~~~~~~~~~~ 243 (977)
|.|..+.. .+.+.+ .+..+|.+...+.......|..++|.|.+.|. |. +.|.|+++|..+... ......
T Consensus 87 a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~-----~~~~~~ 161 (207)
T 1l6x_A 87 VSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNY-----KTTPPV 161 (207)
T ss_dssp EECTTSSSCEEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEEECCE-----EECCCE
T ss_pred EEcCcCCcceEEEeccCCCCCcCCEEEEECCChHHhcCCcEEEEEEEeCeECCCeEEEEEECCeeccCc-----cccCce
Confidence 99987753 333332 34567777665544333356679999999985 44 389999999876311 111111
Q ss_pred EccCCc----eEEEEeecccCCCCeEEEEEEEcCCCc
Q psy574 244 ITSDGM----NLLKIQNVSRTAAPLIILCLGVNAAGS 276 (977)
Q Consensus 244 ~~~~g~----s~L~I~~v~~~d~G~Y~~C~a~n~~g~ 276 (977)
...+|. +.|.|......|.|.|+ |.|.|....
T Consensus 162 ~~~~gt~~~~s~l~i~~~~~~~~g~Yt-C~a~n~~l~ 197 (207)
T 1l6x_A 162 LDSDGSFFLYSKLTVDKSRWQQGNVFS-CSVMHEALH 197 (207)
T ss_dssp ECTTSCEEEEEEEEEEHHHHHTTCCEE-EEEECTTSG
T ss_pred ECCCCCEEEEEEEEECHHHcCCCCEEE-EEEEcCCcC
Confidence 122332 25666666667899999 999998654
No 466
>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB, immune system/cytokine complex; 1.90A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A* 1f42_A* 1f45_A* 3hmx_A* 3qwr_A*
Probab=99.52 E-value=1.1e-13 Score=149.61 Aligned_cols=246 Identities=16% Similarity=0.136 Sum_probs=146.2
Q ss_pred EEeeCCeEEEEEEEecCCCCeEEEEEcCeeeeecCCCccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCcee
Q psy574 199 RLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDL 278 (977)
Q Consensus 199 ~v~~G~~v~L~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~ 278 (977)
.+..|++++|.|.+.. +. .|.|+++|..... . .++ +|.|.+++..|+|.|+ |.+ .+...
T Consensus 17 ~~~~G~~v~l~C~~~~-~~-~i~W~~~~~~~~~------------~-~~~--~L~i~~~~~~d~G~Yt-C~~---~~~~~ 75 (306)
T 3d85_D 17 PDAPGEMVVLTCDTPE-ED-GITWTLDQSSEVL------------G-SGK--TLTIQVKEFGDAGQYT-CHK---GGEVL 75 (306)
T ss_dssp SSCCCEEEEEECSSSC-CS-SCEEEETTCCCCC------------E-ESS--EEEEEECSGGGCEEEE-EEE---TTEEE
T ss_pred cCccCCcEEEECCCCC-CC-cCEEEECCccccC------------C-CCC--EEEEEecCcCCCceEE-Eee---CCccc
Confidence 4558999999998873 22 8999999875321 0 134 9999999999999999 998 46666
Q ss_pred EEEEEEEECCCCCC-CCeEEeCCCceeecCCCcEEEEEEEcc---CceEEEEECCEEcC-C---------CCcEEEe---
Q psy574 279 ARASLTVSGPDPNP-PPVILFGPANQTLPLRSEARLRCQVRG---EGSVQWWRGEREVG-S---------GPRVNVT--- 341 (977)
Q Consensus 279 ~~~~l~V~~~~~~~-pp~i~~~p~~~~v~~g~~~~L~C~~~~---~p~i~W~~~g~~l~-~---------~~~~~~~--- 341 (977)
..+.|.|....... +..|...+.+ .. +...|.|.+.. .....|..++.... . .......
T Consensus 76 ~~~~l~v~~~~~~~~~t~i~~~~~~---pp-~~~~lsC~~~~~~~~~~C~W~pg~~~~l~~~~~~~r~~~~~~~~~C~~~ 151 (306)
T 3d85_D 76 SHSLLLLHKKEDGIWSTDILKDQKE---PK-NKTFLRCEAKNYSGRFTCWWLTTISTDLTFSVKSSRGSSDPQGVTCGAA 151 (306)
T ss_dssp EEEEEEEEEEETTEECCCSSCCCC-------CCCCCEEEBSSSSSEEEEEEEESCCSSEEEEEEEEECSSSCEEEEECCC
T ss_pred ceEEEEEEeccCCcceeeeecccCC---CC-CCCcceEEcCCcccCcEEEecCCCCCceeEEEEEEecCCCCcceECCCC
Confidence 66666665310000 0001000000 00 12356676665 23456766553100 0 0000000
Q ss_pred --cCceEEEeccC-----------------CCCCeEEEEEEEcCCCceEEEEEEEEECCCCCCCcccCCCCCCCCCCCCC
Q psy574 342 --GDGSLVLTDVT-----------------KEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPT 402 (977)
Q Consensus 342 --~~~sl~I~~v~-----------------~~d~G~Y~C~a~n~~G~~~~s~~l~v~~~~~~~~~~~~~~~~~~~p~~P~ 402 (977)
....++|.+.. ....+.++|.|.|..|..+....+.+.. .+.|.||.
T Consensus 152 ~~~~~~c~v~~~~~~~~~~c~~~~~cp~~~~~~~y~~~V~A~n~lg~~s~~~~f~~~~--------------iVkPdPP~ 217 (306)
T 3d85_D 152 TLSAERVRGDNKEYEYSVECQEDSACPAAEESLPIEVMVDAVHKLKYEQYTSSFFIRD--------------IIKPDPPK 217 (306)
T ss_dssp EEEEEEEC--CEEEEEEEEEEETTCCTTSCCCSCEEEEEEEEETTEEEEEEEEECHHH--------------HBCCCCCE
T ss_pred CCCccceeecCccccceeeeeeccccccccccEEEEEEEEEEccCCccccceEEEehh--------------cEecCCCc
Confidence 00112222111 1246778999999999765554443321 15689999
Q ss_pred CCeEEeeCC-CceEEEEEcCCCCCCcc----cceEEEEEeecCCCCCCCCCCCCcccEEEeceecCcCeEEEEccCCCCe
Q psy574 403 KPTLVNQTA-NGLTLAWSRNNQIGSSS----LLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVGLT 477 (977)
Q Consensus 403 ~~~v~~~~~-~sv~lsW~~p~~~~~~~----i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~i~~L~p~t~ 477 (977)
++.+..... ..+.|+|.+|.. .+.+ ...|+|+|+..+.. .|... .....+++.| .+++.
T Consensus 218 ~l~~~~~~~~~~l~vsW~~P~~-~~~p~~~~~L~Y~vryr~~~~~-----------~~~~~-~~~~~ts~~l---~~~~~ 281 (306)
T 3d85_D 218 NLQLKPLKNSRQVEVSWEYPDT-WSTPHSYFSLTFCVQVQGKSKR-----------EKKDR-VFTDKTSATV---ICRKN 281 (306)
T ss_dssp EEEEEEC----CEEEEEECCTT-SCSCTTTSCEEEEEEEECC-----------------CE-EEESSSEEEE---CCCSS
T ss_pred eEEEEEecCCCcEEEEEcCCCC-CcCCCceeeEEEEEEEEECCCC-----------ccEEE-eeccccEEEE---eCCCe
Confidence 999887544 789999999875 2332 37999999876543 34433 3345566665 46999
Q ss_pred EEEEEEEEcCCCCCCCCCCCce
Q psy574 478 YTFLVRALNSHGLSAPSPLSDE 499 (977)
Q Consensus 478 Y~~~V~a~n~~G~s~~S~~s~~ 499 (977)
|.|+|||.|..|.|.+|.+|..
T Consensus 282 Y~vqVRa~~~~~~G~WSeWS~~ 303 (306)
T 3d85_D 282 ASISVRAQDRYYSSSWSEWASV 303 (306)
T ss_dssp CEEEEEEEESSSCCCCCCCEEE
T ss_pred EEEEEEeccCCCCCCCCCCCCC
Confidence 9999999999999999988764
No 467
>2edd_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=4.6e-14 Score=130.17 Aligned_cols=111 Identities=14% Similarity=0.114 Sum_probs=89.6
Q ss_pred CCCCCceEEeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeee----EEEEEEEecCCcceEEEEecCCcCeE
Q psy574 626 GKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIR----TYQIIVGGGNNSALINMTVSASTPTL 701 (977)
Q Consensus 626 g~~s~~~~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~----~Y~v~~~~~~~~~~~~~~~~~~~~~~ 701 (977)
+..|....+.+.+..|+.+|.+|++...++++|.|+|++| ...++.|. +|+|+|+..+........+....+++
T Consensus 3 ~~~s~~~~~~~~~~~pp~~P~~l~~~~~s~tsi~lsW~~p--~~~~~~i~~~~~~Y~v~y~~~~~~~~~~~~~~~~~~~~ 80 (123)
T 2edd_A 3 SGSSGFPTSVPDLSTPMLPPVGVQAVALTHDAVRVSWADN--SVPKNQKTSEVRLYTVRWRTSFSASAKYKSEDTTSLSY 80 (123)
T ss_dssp SCCSCCCCSCSSCCCSSCCCEEEEEEEEETTEEEEEEECS--SSCSSCCCSCCCCEEEEEEETTCTTCCCCCEEESSSEE
T ss_pred CccCCCCcCCCccCCCCCCCcceEEEEcCCCeEEEEecCC--CCCcccccCcCceEEEEEEECCCCCccEEEEeCCceEE
Confidence 3456667777887888889999999999999999999988 45555554 99999988531111112233458999
Q ss_pred EecCCCCCceEEEEEEEEcCCCcCCCCCceEEeecCC
Q psy574 702 LLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSG 738 (977)
Q Consensus 702 ~l~~L~p~t~Y~~~V~A~~~~G~g~~S~~~~~~t~~~ 738 (977)
+|.+|+|++.|.|+|+|+|.+|.|++|.++.++|.+.
T Consensus 81 ~v~gL~P~T~Y~f~V~A~n~~g~g~~S~~v~~~T~~~ 117 (123)
T 2edd_A 81 TATGLKPNTMYEFSVMVTKNRRSSTWSMTAHATTYEA 117 (123)
T ss_dssp EEESCCTTCEEEEEEEECCSSSCCCCCCCEEEECCCS
T ss_pred EecCCCCCCEEEEEEEEeCCCcccCCCCCEEEEccCC
Confidence 9999999999999999999999999999999999876
No 468
>3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ...
Probab=99.52 E-value=5.2e-14 Score=147.22 Aligned_cols=174 Identities=14% Similarity=0.175 Sum_probs=116.4
Q ss_pred ecccceEEeCCCcEEEEEECCCCCC----CCeEEEEeCC-----EEe---e--------------cCCCceEEEecC---
Q psy574 10 VQPKSQRVAAGDTALLECGPPRGHP----EPTLVWKKNG-----HPI---D--------------FENSKRLRLVDG--- 60 (977)
Q Consensus 10 ~~p~~~~v~~G~~v~L~C~~~~g~P----~~~v~W~k~g-----~~l---~--------------~~~~~r~~~~~~--- 60 (977)
.+|..+.+.+|++|+|.|.+ .+.+ ...+.|+|.. +.+ . ....+|+.+..+
T Consensus 5 ~~~~~~~v~~G~~v~L~C~~-~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~ 83 (239)
T 3tv3_H 5 QESGPTLVEASETLSLTCAV-SGDSTAACNSFWGWVRQPPGKGLEWVGSLSHCASYWNRGWTYHNPSLKSRLTLALDTPK 83 (239)
T ss_dssp EEESCSEECTTSCEEEEEEE-ESSCTTSSSCEEEEEEECTTSCCEEEEEEECCCCTTSSCEEEECTTTGGGEEEEEEGGG
T ss_pred ecCCCEEEcCCCCEEEEEEE-cCCcccccceEEEEEEECCCCCcEEEEEEecccccccCCceecCccccCCEEEEEECCC
Confidence 35778999999999999998 4444 4589999832 111 1 112467776543
Q ss_pred --cEEEEcCCCCCCCeEEEEEEEecCc------------eeeeEeEEEEEE----cCCeEEeCCCceEEeCCCeEEEEEE
Q psy574 61 --TNLAIQDSRKTDDGRYQCVVKNVAG------------TRESTDAVLRVL----VKPYIIRGPKDTTVSASSIIVFECS 122 (977)
Q Consensus 61 --g~L~I~~v~~~D~G~Y~C~a~n~~g------------~~~s~~~~l~V~----~~P~~~~~p~~~~v~~G~~v~l~C~ 122 (977)
.+|.|.+++.+|+|.|.|.+.+..+ ........|.|. .+|.+...+....+..|+.++|.|.
T Consensus 84 ~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~w~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~l~C~ 163 (239)
T 3tv3_H 84 NLVFLKLNSVTAADTATYYCARFGGEVLRYTDWPKPAWVDLWGRGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCL 163 (239)
T ss_dssp TEEEEEECSCCGGGCEEEEEEEEEEECSSCSSSCEEEEEEEECCCEEEEECCCCCBCCEEEEECCCCCC--TTEEEEEEE
T ss_pred CEEEEEECCCChhhCEEEEEEEecCccccccccccccceeeeCCCcEEeeccCCCcCCEEEEECCChhhccCCcEEEEEE
Confidence 2599999999999999999986531 011233466664 3466664444455667999999999
Q ss_pred ecc-cCce-EEEEEECCeeCCCC--------ceEEeccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy574 123 VGG-DAVL-TVHWKRLGSAMPED--------RMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTV 185 (977)
Q Consensus 123 v~g-~p~~-~i~W~k~~~~l~~~--------~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V 185 (977)
+.+ .|.+ .+.|++++..+... .........|.|.....+| |.|+|.|.|..+.......|.+
T Consensus 164 ~~~~~p~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~l~~ 235 (239)
T 3tv3_H 164 VKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEP 235 (239)
T ss_dssp EEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEEEECCC
T ss_pred EeeEeCCCeEEEEEECCccCceEecCceECCCCCEEEEEEEEEchhhcCC-CEEEEEEEECCCCceEEEEecc
Confidence 977 4544 58999998654210 1111122468899988888 9999999998766555555443
No 469
>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}
Probab=99.52 E-value=9.9e-14 Score=148.84 Aligned_cols=172 Identities=17% Similarity=0.226 Sum_probs=120.3
Q ss_pred CeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCe--eC------------------CCCceEEec----cceEEE
Q psy574 100 PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGS--AM------------------PEDRMSVLP----SRSLQL 155 (977)
Q Consensus 100 P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~--~l------------------~~~~~~~~~----~~~L~I 155 (977)
+.+...|..+.+.+|++++|.|.+.+.+.+.+.|+|++. .. ..+|+.+.. +.+|.|
T Consensus 25 ~~v~~~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I 104 (279)
T 2wbj_D 25 AVVSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTV 104 (279)
T ss_dssp CCEEEECSEEEEETTSCEEEEEEESSSCEEEEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEECSSSEEEEEE
T ss_pred ceEEeCCCeEEecCCCeEEEEEEeCCCCCCeEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeCCCCEEEEEE
Confidence 445666778899999999999999888889999999641 10 124555543 247999
Q ss_pred ccCccCCCeEEEEEEEeCCe------eEEEEEEEEEee------CCeEEec-CCCcEEeeCCeEEEEEEEecC-CC-CeE
Q psy574 156 SDVRLEDAGEYVCEAENAVG------KISASATLTVQM------APIVRER-PSDLRLEVGRDAVFLCGIEGS-PP-PST 220 (977)
Q Consensus 156 ~~v~~~D~G~Y~C~a~n~~g------~~~~~~~L~V~~------~p~~~~~-p~~~~v~~G~~v~L~C~~~g~-p~-~~i 220 (977)
.+++.+|+|.|+|.+.|..+ .....+.|.|.. +|.+... +....+.+|+.++|.|.+.+. |. +.|
T Consensus 105 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v 184 (279)
T 2wbj_D 105 TSAHPEDSSFYICSARDLTSGANNEQFFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVEL 184 (279)
T ss_dssp SSCCGGGCEEEEEEEEETTCBTSCCEEECCCEEEEEESCGGGCBCCEEEEEECCHHHHHHHSCCEEEEEEEEEBSSCEEE
T ss_pred ccCCccCCEEEEEEEcccccCCccceeeCCCEEEEEecCCCCCCCCEEEEECCCcccccCCCceEEEEEEeeEcCCCcEE
Confidence 99999999999999999421 122345677764 5655543 444455679999999999986 43 599
Q ss_pred EEEEcCeeeeecCC-----------CccccEEEEEccCCceEEEEeecccCC-CCeEEEEEEEcCCCcee
Q psy574 221 FWMLEGNRSLIYPG-----------DRVDNIQAEITSDGMNLLKIQNVSRTA-APLIILCLGVNAAGSDL 278 (977)
Q Consensus 221 ~W~~~g~~~~~~~~-----------~~~~~~~~~~~~~g~s~L~I~~v~~~d-~G~Y~~C~a~n~~g~~~ 278 (977)
.|+++|..+..... ...+.+.+. +.|.|......| .|.|+ |.|.|......
T Consensus 185 ~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~------s~L~i~~~~~~d~~~~Yt-C~v~n~~~~~~ 247 (279)
T 2wbj_D 185 SWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLS------SRLRVSATFWQNPRNHFR-CQVQFYGLSEN 247 (279)
T ss_dssp EEEETTEECCTTEEECSSCEESSTTSTTCCEEEE------EEEECCSTTTTCTTCEEE-EEEEECCBCTT
T ss_pred EEEECCEECCCCcccccccccccccCCCCcEEEE------EEEEEChHHhccCCCEEE-EEEEeCCCCCC
Confidence 99999987532100 012223222 268888877765 67899 99999866543
No 470
>1x5g_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=99.51 E-value=6.7e-14 Score=128.08 Aligned_cols=109 Identities=20% Similarity=0.270 Sum_probs=91.7
Q ss_pred CCCCCceEEeccC--CCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCcceEEEEecCCcCeEEe
Q psy574 626 GKPSNLRAVRTLE--CEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLL 703 (977)
Q Consensus 626 g~~s~~~~~~T~~--~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~l 703 (977)
|+.|..+.++|.. .+|. +|.++++...+.++|.|+|++| ...+|.|.+|+|+|+..+...+.. +....++++|
T Consensus 1 G~~S~~~~~~T~~~~~~P~-~P~~l~~~~~~~~si~l~W~~p--~~~~~~i~~Y~v~~~~~~~~~~~~--~~~~~~~~~i 75 (116)
T 1x5g_A 1 GSSGSSGRVETQPEVQLPG-PAPNLRAYAASPTSITVTWETP--VSGNGEIQNYKLYYMEKGTDKEQD--VDVSSHSYTI 75 (116)
T ss_dssp CCCCCCCCCSSCCCSSCCC-CCSSCEEEEEETTEEEEECCCC--SCCSSCCSEEEEEEEETTCCCCCC--EEECSSEEEE
T ss_pred CCCccCeEEEcCCCCCCCc-CCCccEEEecCCCEEEEEEeCC--CCCCCcccEEEEEEEECCCCccEE--EecCCceEEE
Confidence 4678888899953 5665 8899999999999999999999 568899999999999865332222 2346789999
Q ss_pred cCCCCCceEEEEEEEEcCCCcCCCCCceEEeecCCC
Q psy574 704 TNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGP 739 (977)
Q Consensus 704 ~~L~p~t~Y~~~V~A~~~~G~g~~S~~~~~~t~~~~ 739 (977)
.+|+|++.|.|+|+|+|.+|.|++|.++.++|....
T Consensus 76 ~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~~~~ 111 (116)
T 1x5g_A 76 NGLKKYTEYSFRVVAYNKHGPGVSTPDVAVRTLSDS 111 (116)
T ss_dssp CSCCTTCEEEEEEEEECSSCCCCBCCCCCEECCCSS
T ss_pred cCCCCCCEEEEEEEEEcCCCcCCCCCCEEEECCCCC
Confidence 999999999999999999999999999999987754
No 471
>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}
Probab=99.51 E-value=1.8e-14 Score=149.75 Aligned_cols=168 Identities=14% Similarity=0.139 Sum_probs=113.7
Q ss_pred EeCCCceEEeCCCeEEEEEEeccc-Cc-e-EEEEEECCeeC-CCCceE--Eec------cceEEEccCccCCCeEEEEEE
Q psy574 103 IRGPKDTTVSASSIIVFECSVGGD-AV-L-TVHWKRLGSAM-PEDRMS--VLP------SRSLQLSDVRLEDAGEYVCEA 170 (977)
Q Consensus 103 ~~~p~~~~v~~G~~v~l~C~v~g~-p~-~-~i~W~k~~~~l-~~~~~~--~~~------~~~L~I~~v~~~D~G~Y~C~a 170 (977)
+..|....+.+|++++|.|.+.|. |. + .|.|++++..+ ...... ... ...|.|.++..+|+|.|+|.|
T Consensus 17 ~~~p~~~~v~~G~~v~L~C~~~g~~P~~p~~v~W~~~g~~~~~~~~~~~~~~~~g~~~~~s~L~I~~~~~~D~g~Y~C~~ 96 (231)
T 2w59_A 17 AIPPSPGELYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPMVLQEHFNGTYSASSAVPVSTQDWLSGERFTCTV 96 (231)
T ss_dssp EECCCHHHHHTSCCCEEEEEEEEESCCTTCEEEEECSSSSCCCCCCCEEEECTTSCEEEEEEEECCHHHHHTTCCEEEEE
T ss_pred EeCcChhhcccCCceEEEEEEeCccCCCCeEEEEEcCCeeccccccccceECCCCcEEEEEEEEecchhccCCCEEEEEE
Confidence 456777778899999999999874 63 4 99999998877 322111 112 236999999999999999999
Q ss_pred EeCCeeEEEEEEEEE----eeCCeEEecCCCcEEeeCCeEEEEEEEecC-C-CCeEEEEEcCeeeeecCCC---------
Q psy574 171 ENAVGKISASATLTV----QMAPIVRERPSDLRLEVGRDAVFLCGIEGS-P-PPSTFWMLEGNRSLIYPGD--------- 235 (977)
Q Consensus 171 ~n~~g~~~~~~~L~V----~~~p~~~~~p~~~~v~~G~~v~L~C~~~g~-p-~~~i~W~~~g~~~~~~~~~--------- 235 (977)
.|..+.......+.+ ..+|.+.+.+.......+..++|.|.+.|. | .+.|.|+|+|..+......
T Consensus 97 ~~~~~~~~~~~~v~~~~~~~~~P~v~v~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~ 176 (231)
T 2w59_A 97 QHEELPLPLSKSVYRNTGPTTPPLIYPFAPHPEELSLSRVTLSCLVRGFRPRDIEIRWLRDHRAVPATEFVTTAVLPEER 176 (231)
T ss_dssp ECTTCSSCEEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECCGGGCEECCCEECCT
T ss_pred EcCCCCCceEEEEecCCCCCcCCEEEEeCCCHHHhccCceEEEEEEEeccCCCcEEEEEECCEECCCcccccCccccCcc
Confidence 998754222222322 145666544322211235679999999985 4 3689999999876421100
Q ss_pred ------cc-ccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCce
Q psy574 236 ------RV-DNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSD 277 (977)
Q Consensus 236 ------~~-~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~ 277 (977)
.. +.|.+. +.|.|......|.|.|+ |.|.|.....
T Consensus 177 ~~~~~~~d~gt~~~~------s~L~i~~~~~~~~g~Yt-C~v~n~~l~~ 218 (231)
T 2w59_A 177 TANGAGGDGDTFFVY------SKMSVETAKWNGGTVFA-CMAVHEALPM 218 (231)
T ss_dssp TSCC---CCCCEEEE------EEEEEEHHHHHTTCCEE-EEEECTTSTT
T ss_pred cccccCCCCCeEEEE------EEEEEeHHHcCCCCcEE-EEEEcCCCCC
Confidence 01 122222 37889988889999999 9999987643
No 472
>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Probab=99.51 E-value=6.9e-14 Score=142.62 Aligned_cols=166 Identities=15% Similarity=0.223 Sum_probs=111.8
Q ss_pred cceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCC--E---Eee-----cCCCceEEEecC------cEEEEcCCCC
Q psy574 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNG--H---PID-----FENSKRLRLVDG------TNLAIQDSRK 70 (977)
Q Consensus 7 ~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g--~---~l~-----~~~~~r~~~~~~------g~L~I~~v~~ 70 (977)
.+...|..+.+.+|++|+|.|.+ .+.+ +.|.|+|+. . .+- ....+|+.+..+ .+|.|.+++.
T Consensus 3 ~v~q~p~~v~v~~G~~v~L~C~~-~~~~-~~v~W~r~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~L~I~~v~~ 80 (207)
T 1ypz_E 3 QVEQSPSALSLHEGTDSALRCNF-TTTM-RSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSKERRYSTLHIRDAQL 80 (207)
T ss_dssp SEEESCSEEEEETTCCEEEEEEE-SSCC-SEEEEEEECTTSCCEEEEEESSEEEEETTEEEEECTTTCSEEEEEECSCCG
T ss_pred ccEECCCeEEEccCCcEEEEEEE-eCCC-eEEEEEEeCCCCCeEEEEEEccCCccCCCEEEEeccCCCCEEEEEECCCCH
Confidence 45677888999999999999998 3433 489999842 2 221 112457776643 4799999999
Q ss_pred CCCeEEEEEEEecCc---------e-eeeEeEEEEEEcCCeEEeCCCceEEeCCCeEEEEEEeccc-Cc-eEEEEEECCe
Q psy574 71 TDDGRYQCVVKNVAG---------T-RESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGD-AV-LTVHWKRLGS 138 (977)
Q Consensus 71 ~D~G~Y~C~a~n~~g---------~-~~s~~~~l~V~~~P~~~~~p~~~~v~~G~~v~l~C~v~g~-p~-~~i~W~k~~~ 138 (977)
+|+|.|.|.+.+..+ . .....+.|.|...+.....| .+.+..+ .+.|.|.+.|. |. +.|.|+++ .
T Consensus 81 ~D~G~Y~C~~~~~~~~~p~~~~~~~~~~~~~t~L~V~~~~~~~~~P-~v~~~~~-~~~l~C~~~g~~P~~~~v~W~~~-~ 157 (207)
T 1ypz_E 81 EDSGTYFCAADTWHISEGYELGTDKLVFGQGTQVTVEPKSQPPAKP-SVFIMKN-GTNVACLVKDFYPKEVTISLRSS-K 157 (207)
T ss_dssp GGCEEEEEEEECBCCCTTCCCCCCCCEECCCEEEEEECCCCCCCCC-EEEEEEE-TTEEEEEEEEESSSCCEEEEECS-S
T ss_pred HHCEEEEEEEecCCcccccccccceeeecCccEEEEccCCCCCCCC-eEEEeCC-CCeEEEEEeeEeCCCeEEEEecC-C
Confidence 999999999988642 1 11234578887532222222 2222222 37999999764 54 79999999 6
Q ss_pred eCCCCc--eEEeccceEEEccCcc-CCCeEEEEEEEeCCeeE
Q psy574 139 AMPEDR--MSVLPSRSLQLSDVRL-EDAGEYVCEAENAVGKI 177 (977)
Q Consensus 139 ~l~~~~--~~~~~~~~L~I~~v~~-~D~G~Y~C~a~n~~g~~ 177 (977)
.+.... .....++.+.+..... +|.|.|+|.+.|..+..
T Consensus 158 ~l~~~~~~~~~~~~g~y~~~~~~~~~~~~~ytC~v~~~~~~~ 199 (207)
T 1ypz_E 158 KIVEFDPAIVISPSGKYSAVKLGQYGDSNSVTCSVQHNSETV 199 (207)
T ss_dssp EEEECCCEEEECTTSSEEEEECEEESSTTTCEEEEEETTEEE
T ss_pred cccCCccceEEcCCCcEEEEEeecccCCCcEEEEEEECCccE
Confidence 664322 2223567777766554 67899999999987653
No 473
>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...
Probab=99.51 E-value=3.6e-14 Score=147.77 Aligned_cols=174 Identities=14% Similarity=0.204 Sum_probs=111.7
Q ss_pred ecccceEEeCCCcEEEEEECCCCC--CCCeE--EEEeCC-----EEe--------------ecCCCceEEEecCc-----
Q psy574 10 VQPKSQRVAAGDTALLECGPPRGH--PEPTL--VWKKNG-----HPI--------------DFENSKRLRLVDGT----- 61 (977)
Q Consensus 10 ~~p~~~~v~~G~~v~L~C~~~~g~--P~~~v--~W~k~g-----~~l--------------~~~~~~r~~~~~~g----- 61 (977)
.+|..+.+.+|++|+|.|.+ .+. +...+ .|+|.. +.+ .....+|+.+..+.
T Consensus 5 ~~~~~~~v~~G~~v~L~C~~-~~~~~~~~~i~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~ 83 (232)
T 3qhz_H 5 RESGPALVKPTQTLTLTCSF-SGFSLSTSGMSVSWIRQPPGKALEWLALIDWDDDTYYITYSSSLKTRLTISKDTSKSQV 83 (232)
T ss_dssp EEECCSEECTTSCEEEEEEE-ESCGGGCTTCEEEEEEECTTSCCEEEEEEESSSSCEEECCCTTTTTTEEEEEETTTTEE
T ss_pred EcCCCEEECCCCcEEEEEEE-eCcccccceeEeEEEEECCCCCcEEEEEEECCCCccccccCccccCceEEEeccCCCEE
Confidence 35667899999999999998 332 22344 999832 111 01123577776432
Q ss_pred EEEEcCCCCCCCeEEEEEEEecCc-------eeeeEeEEEEEE----cCCeEEeCCCceEEeCCCeEEEEEEeccc-C-c
Q psy574 62 NLAIQDSRKTDDGRYQCVVKNVAG-------TRESTDAVLRVL----VKPYIIRGPKDTTVSASSIIVFECSVGGD-A-V 128 (977)
Q Consensus 62 ~L~I~~v~~~D~G~Y~C~a~n~~g-------~~~s~~~~l~V~----~~P~~~~~p~~~~v~~G~~v~l~C~v~g~-p-~ 128 (977)
+|.|.+++.+|+|.|.|.+.+..+ ......+.|.|. .+|.+...+....+..|+.++|.|.+.+. | .
T Consensus 84 sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P~~ 163 (232)
T 3qhz_H 84 VLTMTNMDPVDTATYYCARTLRVSGDYVRDFDLWGRGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEP 163 (232)
T ss_dssp EEEECSCCGGGCEEEEEEEECCC---CCCCCCEECCCEEEEECSSCCBCCEEEEECC-------CEEEEEEEEEEEBSSC
T ss_pred EEEECcCChhhCEEEEEEEeeccCccccccceeeCCCeEEEEecCCCCCCEEEEecccccccCCCcEEEEEEEeeEeCCC
Confidence 599999999999999999987531 112334567775 45666644444456679999999999764 4 3
Q ss_pred eEEEEEECCeeCCCC--------ceEEeccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy574 129 LTVHWKRLGSAMPED--------RMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTV 185 (977)
Q Consensus 129 ~~i~W~k~~~~l~~~--------~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V 185 (977)
..+.|++++..+... .........|.|.....+| |.|+|.|.|..+.......|.+
T Consensus 164 ~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~ytC~v~~~~~~~~~~~~l~~ 227 (232)
T 3qhz_H 164 VTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEP 227 (232)
T ss_dssp CEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGGGT-CCCEEEEEEGGGTEEEEEECCC
T ss_pred eEEEEEECCEecceeeccceeCCCCCEEEEEEEEEchhhcCC-CEEEEEEEeCCCCccEEEEeCC
Confidence 468899998643210 0011122468899998889 9999999998876655555543
No 474
>3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H*
Probab=99.51 E-value=6.9e-14 Score=146.94 Aligned_cols=176 Identities=15% Similarity=0.210 Sum_probs=114.9
Q ss_pred eecccceEEeCCCcEEEEEECCC-CCCCCeEEEEeC--CE---Ee------------ecCCCceEEEecC-----cEEEE
Q psy574 9 RVQPKSQRVAAGDTALLECGPPR-GHPEPTLVWKKN--GH---PI------------DFENSKRLRLVDG-----TNLAI 65 (977)
Q Consensus 9 ~~~p~~~~v~~G~~v~L~C~~~~-g~P~~~v~W~k~--g~---~l------------~~~~~~r~~~~~~-----g~L~I 65 (977)
..+|..+.+.+|++|+|.|.+.. ..+...+.|+|. +. .+ .....+|+.+..+ .+|.|
T Consensus 3 l~~~~~v~v~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I 82 (248)
T 3u2s_H 3 LVESGGGVVQPGSSLRLSCAASGFDFSRQGMHWVRQAPGQGLEWVAFIKYDGSEKYHADSVWGRLSISRDNSKDTLYLQM 82 (248)
T ss_dssp EEEECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEEGGGTEEEEEE
T ss_pred eecCCCEEEeCCCCEEEEEEeccccCCccEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEE
Confidence 45788899999999999999832 134568999983 21 11 0122467777543 25999
Q ss_pred cCCCCCCCeEEEEEEEecC---------------------ceeeeEeEEEEEE----cCCeEEeCCCceEEeCCCeEEEE
Q psy574 66 QDSRKTDDGRYQCVVKNVA---------------------GTRESTDAVLRVL----VKPYIIRGPKDTTVSASSIIVFE 120 (977)
Q Consensus 66 ~~v~~~D~G~Y~C~a~n~~---------------------g~~~s~~~~l~V~----~~P~~~~~p~~~~v~~G~~v~l~ 120 (977)
.+++.+|+|.|.|.+.+.. .......+.|.|. .+|.+...+....+..|+.++|.
T Consensus 83 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~~~~~~~g~~~~L~ 162 (248)
T 3u2s_H 83 NSLRVEDTATYFCVREAGGPDYRNGYNYYDFYDGYYNYHYMDVWGKGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALG 162 (248)
T ss_dssp CSCCGGGCEEEEEEEEEEECEEETTEEEECGGGCCEEEEEEEEECCCEEEEECSCCCBCCEEEEECCC------CEEEEE
T ss_pred CCCCHHHCEEEEEEEeCCCCccccccccccccccccccccceeeCCCEEEEEcccCCCCCEEEEeCCCccccCCCcEEEE
Confidence 9999999999999998742 1112234567776 34566544444455679999999
Q ss_pred EEecc-cC-ceEEEEEECCeeCCC--------CceEEeccceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy574 121 CSVGG-DA-VLTVHWKRLGSAMPE--------DRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTV 185 (977)
Q Consensus 121 C~v~g-~p-~~~i~W~k~~~~l~~--------~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V 185 (977)
|.+.+ .| ...+.|++++..+.. ..........|.|.....+| |.|+|.|.|..+.......|.+
T Consensus 163 C~~~~~~P~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~l~~ 236 (248)
T 3u2s_H 163 CLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEP 236 (248)
T ss_dssp EEEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGBTT-BCCEEEEEEGGGTEEEEEECCC
T ss_pred EEEeeEECCCeEEEEeECCccCceeecCceECCCCCEEEEEEEEEChhhcCC-CeEEEEEEECCCCcceEEEEcc
Confidence 99976 45 467999999864321 01111122468888888888 9999999998766554444443
No 475
>2crm_A Fibronectin type-III domain containing protein 3A; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=99.51 E-value=1.2e-13 Score=127.31 Aligned_cols=112 Identities=19% Similarity=0.302 Sum_probs=92.6
Q ss_pred eeCCCCCceEEeccCCCCCCCCceeEEE-EecCcEEEEEeeCCCCCCC-CeeeeEEEEEEEecCC-cceEEEEecCCcCe
Q psy574 624 VDGKPSNLRAVRTLECEPSGVPQLTDPV-LLNATSVLLKWKPPPVGTH-NGVIRTYQIIVGGGNN-SALINMTVSASTPT 700 (977)
Q Consensus 624 g~g~~s~~~~~~T~~~~P~~~P~~v~~~-~~~~~sv~v~W~~p~~~~~-ng~i~~Y~v~~~~~~~-~~~~~~~~~~~~~~ 700 (977)
|.|++|..+.++|..++|. +|.++.+. ..+.++|.|+|++| ... +..|.+|.|+|+..+. ..+... ..+..+.
T Consensus 1 G~s~~S~~~~~~t~~~~P~-~P~~~~~~~~~~~~sv~l~W~~p--~~~gg~~i~~Y~v~~~~~~~~~~~~~~-~~~~~~~ 76 (120)
T 2crm_A 1 GSSGSSGVVEFTTCPDKPG-IPVKPSVKGKIHSHSFKITWDPP--KDNGGATINKYVVEMAEGSNGNKWEMI-YSGATRE 76 (120)
T ss_dssp CCCTTCSCCSCCSCCCCCC-CCCCCEEEEEEETTEEEEECCCC--TTCCSSCCCEEEEEEEESSSSCCCEEE-ECSSCSE
T ss_pred CCCCCcCCEEEEeCCCCCC-CCCCCEEeeccCCCEEEEEECCC--CcCCCCeeeEEEEEEccCCCCcCCEEE-EeccccE
Confidence 5688999999999999986 67777776 77889999999998 444 4579999999988653 334333 3467889
Q ss_pred EEecCCCCCceEEEEEEEEcCCCcCCCCCceEEeecCCC
Q psy574 701 LLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGP 739 (977)
Q Consensus 701 ~~l~~L~p~t~Y~~~V~A~~~~G~g~~S~~~~~~t~~~~ 739 (977)
++|.+|+|++.|.|+|+|+|.+|.|++|+.+.++|....
T Consensus 77 ~~v~~L~p~t~Y~frV~A~n~~G~s~~S~~~~~~T~~~~ 115 (120)
T 2crm_A 77 HLCDRLNPGCFYRLRVYCISDGGQSAVSESLLVQTPAVS 115 (120)
T ss_dssp EEECSCCTTSCEEEEEEEEETTEECCCCCCCCCCCCCCS
T ss_pred EEECCCCCCCEEEEEEEEEcCCccCCCcccEEEEcCCCC
Confidence 999999999999999999999999999999988887654
No 476
>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*
Probab=99.51 E-value=8.3e-14 Score=143.08 Aligned_cols=165 Identities=18% Similarity=0.253 Sum_probs=111.5
Q ss_pred CCceEEeCCCeEEEEEEecccC--ceEEEEEECC--eeC-----------------CCCceEEec-----cceEEEccCc
Q psy574 106 PKDTTVSASSIIVFECSVGGDA--VLTVHWKRLG--SAM-----------------PEDRMSVLP-----SRSLQLSDVR 159 (977)
Q Consensus 106 p~~~~v~~G~~v~l~C~v~g~p--~~~i~W~k~~--~~l-----------------~~~~~~~~~-----~~~L~I~~v~ 159 (977)
|....+.+|++++|.|.+.+.+ .+.+.|+|+. ..+ ..+|+.+.. +.+|.|.+++
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~ 86 (215)
T 1c5d_H 7 SGPGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQ 86 (215)
T ss_dssp ECCCEECTTCCEEEEEEECSSCTTSCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEETTTTEEEEEESSCC
T ss_pred CCCeeecCCCcEEEEEEECCCcCCCCeEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeCCCceEEEEECCCC
Confidence 5667899999999999998764 5789999863 211 124555542 2489999999
Q ss_pred cCCCeEEEEEEEeCCe---eEEEEEEEEEee----CCeEEecCCCcEEeeCCeEEEEEEEecC-CCC-eEEEEEcCeeee
Q psy574 160 LEDAGEYVCEAENAVG---KISASATLTVQM----APIVRERPSDLRLEVGRDAVFLCGIEGS-PPP-STFWMLEGNRSL 230 (977)
Q Consensus 160 ~~D~G~Y~C~a~n~~g---~~~~~~~L~V~~----~p~~~~~p~~~~v~~G~~v~L~C~~~g~-p~~-~i~W~~~g~~~~ 230 (977)
.+|+|.|.|.+.+..+ .....+.|.|.. +|.+...+....+.+|+.++|.|.+.+. |.+ .+.|++++..+.
T Consensus 87 ~~D~G~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~ 166 (215)
T 1c5d_H 87 TEDTAIYFCTREDGWNYFDYWGPGTMVTVSSAQTTAPSVYPLAPGCGDTTSSTVTLGCLVKGYFPEPVTVTWNSGALSSD 166 (215)
T ss_dssp GGGCEEEEEEECCSSSCSCCBCCCEEEEECSSCCBCCCEEEECCCSSCCCCSSEEEEEEEEEEBSSCCEEEEGGGTTCCS
T ss_pred cccCEEEEEEEecCCcccceEcCCEEEEecCCCCCCCeEEeccCChhhccCCcEEEEEEEeeeEcCCcEEEEccCCccCc
Confidence 9999999999998642 122346788873 4555544433445789999999999886 777 999999986532
Q ss_pred ecCCCc---cccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCceeEE
Q psy574 231 IYPGDR---VDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLAR 280 (977)
Q Consensus 231 ~~~~~~---~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~~~ 280 (977)
...... .+.+.+. +.|. ....+| |.|+ |.|.|..+.....
T Consensus 167 ~~~~~~~~~~g~~~~~------s~L~--~~~~~~-g~yt-C~v~n~~~~~~~~ 209 (215)
T 1c5d_H 167 VHTFPAVLQSGLYTLT------SSVT--SSTWPS-QTVT-CNVAHPASSTKVD 209 (215)
T ss_dssp CCBCCCEEETTEEEEE------EEEE--ESSTTT-SCCE-EEEEEGGGTEEEE
T ss_pred eEecCcccCCCCEEEE------EEEe--cccCCC-CeEE-EEEEeCCCCccEE
Confidence 110000 0112211 1333 444356 9999 9999998876443
No 477
>2haz_A N-CAM 1, neural cell adhesion molecule 1; fibronectin type III repeat, FN1, beta sandwich; 1.70A {Homo sapiens} SCOP: b.1.2.1
Probab=99.50 E-value=4.5e-14 Score=126.54 Aligned_cols=98 Identities=19% Similarity=0.257 Sum_probs=80.9
Q ss_pred ccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCee-eeEEEEEEEecCCcceE-E-EE--ecCCcCeEEecCCCCCc
Q psy574 636 TLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGV-IRTYQIIVGGGNNSALI-N-MT--VSASTPTLLLTNLSAGI 710 (977)
Q Consensus 636 T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~-i~~Y~v~~~~~~~~~~~-~-~~--~~~~~~~~~l~~L~p~t 710 (977)
+.+++|+. |.++.+...+.+ +.|+|++| ...||. |.+|.|+|+..+...+. . .. ..+..++++|.+|+|++
T Consensus 2 ~~~~~P~~-P~~~~~~~~~~~-v~l~W~~P--~~~~G~pi~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t 77 (105)
T 2haz_A 2 SHMDTPSS-PSIDQVEPYSST-AQVQFDEP--EATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPET 77 (105)
T ss_dssp CCCCCCCC-CEEEEEEECSSC-EEEEEECC--SCCTTSCCCEEEEEEEETTCCCCEEEEEEHHHHHHHSEEEECSCCTTC
T ss_pred CCCCCCcC-CCCCEEEEcCCc-EEEEEcCC--cccCCccccEEEEEEEECCCCCCccceEEccccCCccEEEECCCCCCC
Confidence 35678875 899999888877 99999999 788888 99999999986533221 1 12 22357899999999999
Q ss_pred eEEEEEEEEcCCCcCCCCCceEEeecC
Q psy574 711 RYSVSLAATNRAGTGPYSRPALLSLTS 737 (977)
Q Consensus 711 ~Y~~~V~A~~~~G~g~~S~~~~~~t~~ 737 (977)
.|.|+|+|+|.+|.|++|+++.|+|.+
T Consensus 78 ~Y~~rV~A~n~~G~g~~S~~~~~~T~p 104 (105)
T 2haz_A 78 TYAVRLAALNGKGLGEISAASEFKTQP 104 (105)
T ss_dssp EEEEEEEEEETTEECCCCCCEEEECCC
T ss_pred EEEEEEEEEcCCccCCCcCCEeeEEec
Confidence 999999999999999999999998854
No 478
>3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ...
Probab=99.49 E-value=1.4e-13 Score=142.98 Aligned_cols=173 Identities=13% Similarity=0.240 Sum_probs=116.2
Q ss_pred cccceEEeCCCcEEEEEECCC-CCCCCeEEEEeCC--E---Ee------------ecCCCceEEEecCc-----EEEEcC
Q psy574 11 QPKSQRVAAGDTALLECGPPR-GHPEPTLVWKKNG--H---PI------------DFENSKRLRLVDGT-----NLAIQD 67 (977)
Q Consensus 11 ~p~~~~v~~G~~v~L~C~~~~-g~P~~~v~W~k~g--~---~l------------~~~~~~r~~~~~~g-----~L~I~~ 67 (977)
+|..+.+.+|++|+|.|.+.. ..+...+.|+|.. . .+ .....+|+.+..++ +|.|.+
T Consensus 6 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~ 85 (230)
T 3n9g_H 6 QSGAEVRKPGASTKVSCKASGYTFTHYYMHWVRQAPGQGLEWMGIINPSGGSTTYAQKLQGRVTMTRDTSTSTVYMELSS 85 (230)
T ss_dssp ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred ecCCEEEcCCCCEEEEEEeecceecCcEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEECC
Confidence 455799999999999999832 1345689999731 1 11 01123577765433 499999
Q ss_pred CCCCCCeEEEEEEEecCc-------eeeeEeEEEEEE----cCCeEEeCCCceEEeCCCeEEEEEEeccc-C-ceEEEEE
Q psy574 68 SRKTDDGRYQCVVKNVAG-------TRESTDAVLRVL----VKPYIIRGPKDTTVSASSIIVFECSVGGD-A-VLTVHWK 134 (977)
Q Consensus 68 v~~~D~G~Y~C~a~n~~g-------~~~s~~~~l~V~----~~P~~~~~p~~~~v~~G~~v~l~C~v~g~-p-~~~i~W~ 134 (977)
++.+|+|.|.|.+.+..+ ......+.|.|. .+|.+...+....+.+|+.++|.|.+.+. | .+.+.|
T Consensus 86 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P~~~~v~W- 164 (230)
T 3n9g_H 86 LRSEDTAVYYCARDWGSNYVWGSYPKYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSW- 164 (230)
T ss_dssp CCGGGCEEEEEEEECCCSSSTTCCEEEECCCEEEEECSSCCBCCEEEEECCCCCCCTTCEEEEEEEEEEEBSSCCEEEE-
T ss_pred CChhhCEEEEEEEccCCCCcccccccccCCCEEEEEEecCCCCCEEEecCCCccccCCCCEEEEEEEEeEECCCEEEEE-
Confidence 999999999999987531 112234567775 34555543444445789999999999764 4 457999
Q ss_pred ECCeeCCCCc----eEEec------cceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEEEe
Q psy574 135 RLGSAMPEDR----MSVLP------SRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQ 186 (977)
Q Consensus 135 k~~~~l~~~~----~~~~~------~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~V~ 186 (977)
++..+.... ..... ...|.|.....+| |.|+|.|.|..+.......|.|.
T Consensus 165 -~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~~~v~ 224 (230)
T 3n9g_H 165 -NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPK 224 (230)
T ss_dssp -GGGTBCTTEEECCCEECTTSCEEEEEEEEEESTTBTT-BCCEEEEEEGGGTEEEEEECCCC
T ss_pred -CCcccCCCeEeCCceECCCCCEEEEEEEEECHHHcCC-CeEEEEEEECCCCcceEEEccCC
Confidence 655443211 11111 2479999999999 99999999988766555555554
No 479
>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E
Probab=99.49 E-value=6.2e-14 Score=147.91 Aligned_cols=165 Identities=17% Similarity=0.253 Sum_probs=101.4
Q ss_pred CCceEEeCCCeEEEEEEecccC--ceEEEEEECCe--eC------------------CCCceEEec-----cceEEEccC
Q psy574 106 PKDTTVSASSIIVFECSVGGDA--VLTVHWKRLGS--AM------------------PEDRMSVLP-----SRSLQLSDV 158 (977)
Q Consensus 106 p~~~~v~~G~~v~l~C~v~g~p--~~~i~W~k~~~--~l------------------~~~~~~~~~-----~~~L~I~~v 158 (977)
|....+.+|++++|.|.+.+.+ .+.+.|+|... .+ ..+|+.+.. +.+|.|.++
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v 86 (257)
T 3bn9_D 7 SGGGLVKPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMSSL 86 (257)
T ss_dssp ECCEEECTTCEEEEEEEEESSCGGGCCEEEEEECTTSCEEEEEEECSSSCCEEECGGGTTTEEEEEETTTTEEEEEEESC
T ss_pred cCCEEEcCCCcEEEEEEeccccCCCceEEEEEECCCCCeEEEEEEecCCCceecCcccCCceEEEecCCCCEEEEEECCC
Confidence 4566889999999999998765 67899999631 11 124555542 247999999
Q ss_pred ccCCCeEEEEEEEeCCe-------------eEEEEEEEEEee----CCeEEecCCCcEEeeCCeEEEEEEEecC-CCC-e
Q psy574 159 RLEDAGEYVCEAENAVG-------------KISASATLTVQM----APIVRERPSDLRLEVGRDAVFLCGIEGS-PPP-S 219 (977)
Q Consensus 159 ~~~D~G~Y~C~a~n~~g-------------~~~~~~~L~V~~----~p~~~~~p~~~~v~~G~~v~L~C~~~g~-p~~-~ 219 (977)
+.+|+|.|.|.+.+..| .....+.|.|.. +|.+...+....+.+|+.++|.|.+.+. |.+ .
T Consensus 87 ~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~~~~~~~t~L~V~~~~~~~P~v~~~~p~~~~~~g~~v~L~C~~~g~~P~pi~ 166 (257)
T 3bn9_D 87 RAEDTAVYYCARPYLTYPQRRGPQNVSPFDNWGQGTMVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVT 166 (257)
T ss_dssp CGGGCEEEEEEEECCSSTTSCCCCTTCCEEEECCCEEEEECSSCCBCCEECCCCC-----------CCCEEEEEBSSCCE
T ss_pred ChhhCEEEEEEEecCCCcccccccccceeeeeCCcEEEEecCCCCcCCcEEEecCcccccCCCcEEEEEEEeeEECCCcE
Confidence 99999999999998754 122345788874 4655543333346789999999999885 777 9
Q ss_pred EEEEEcCeeeeecCC----CccccEEEEEccCCceEEEEeecccCCCCeEEEEEEEcCCCcee
Q psy574 220 TFWMLEGNRSLIYPG----DRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDL 278 (977)
Q Consensus 220 i~W~~~g~~~~~~~~----~~~~~~~~~~~~~g~s~L~I~~v~~~d~G~Y~~C~a~n~~g~~~ 278 (977)
+.|++++..+..... ...+.+... +.|.|..+...| |.|+ |.|.|......
T Consensus 167 v~W~k~g~~~~~~~~~~~~~~~g~y~~~------s~L~I~~~~~~~-g~Yt-C~v~n~~~~~~ 221 (257)
T 3bn9_D 167 VSWNSGALTSGVHTFPAVLQSSGLYSLS------SVVTVPSSSLGT-QTYI-CNVNHKPSNTK 221 (257)
T ss_dssp EEETTTTCCSSCEECCCEECTTSCEEEE------EECCCC--------CEE-EEEEEGGGTEE
T ss_pred EEEeeCCCcCCcEecCCeEcCCCCEEEE------EEEEEcccccCC-CeEE-EEEEecCCCcC
Confidence 999999875311100 112233322 368888888778 9999 99999765443
No 480
>1x5z_A Receptor-type tyrosine-protein phosphatase delta; fibronectin type III domain containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=99.49 E-value=6.5e-14 Score=127.93 Aligned_cols=110 Identities=22% Similarity=0.267 Sum_probs=93.5
Q ss_pred eeCCCCCceEEeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCcceEEEEecCCcCeEEe
Q psy574 624 VDGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLL 703 (977)
Q Consensus 624 g~g~~s~~~~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~l 703 (977)
|.|+.|..+.++|.+++|. +|.++++...+.++|.|+|++|. . +.|.+|+|+|+..+........ ....+.++|
T Consensus 1 G~g~~S~~~~~~t~~~~P~-~P~~l~~~~~~~~sv~l~W~~p~--~--~~i~~Y~v~~~~~~~~~~~~~~-~~~~~~~~i 74 (115)
T 1x5z_A 1 GSSGSSGDIQVITQTGVPG-QPLNFKAEPESETSILLSWTPPR--S--DTIANYELVYKDGEHGEEQRIT-IEPGTSYRL 74 (115)
T ss_dssp CCCCCCCCCCCCCCSCCCC-CCEEEEEECSSSSEEEEEEECCS--C--CCCCEEEECBEESSSCCCBCCE-ECSSSEEEE
T ss_pred CCCCCCCCEEEECCCCCCC-CCccCEeeeCCCCEEEEEEcCCC--C--CCccEEEEEEEeCCCCCceEEe-cCCCcEEEE
Confidence 5688899999999999997 88999999989999999999993 3 4899999999886533222222 345799999
Q ss_pred cCCCCCceEEEEEEEEcCCCcCCCCCceEEeecCCC
Q psy574 704 TNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGP 739 (977)
Q Consensus 704 ~~L~p~t~Y~~~V~A~~~~G~g~~S~~~~~~t~~~~ 739 (977)
.+|+|++.|.|+|+|+|.+|.|++|.++.++|....
T Consensus 75 ~~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~T~~~~ 110 (115)
T 1x5z_A 75 QGLKPNSLYYFRLAARSPQGLGASTAEISARTMQSS 110 (115)
T ss_dssp ECCCTTCEEEECEEEECSSCEEEECCCEEEECCCCC
T ss_pred CCCCCCCeEEEEEEEECCCcccCCCcCEEEecCCCC
Confidence 999999999999999999999999999999988765
No 481
>2edx_A Protein tyrosine phosphatase, receptor type, F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=1.9e-13 Score=128.69 Aligned_cols=109 Identities=20% Similarity=0.195 Sum_probs=90.1
Q ss_pred eEEEEEeeEeCCCeEEEEEEec----CCCccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEee
Q psy574 546 LIELTEVKPMTSTSVKLTWEIL----NTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFF 621 (977)
Q Consensus 546 ~~~~l~~~~~~~tsv~lsW~~p----~~~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n 621 (977)
++.++++...+.++|.|+|++| .++.|.+|+|+|+..+................++++|.+|+|++.|.|+|+|+|
T Consensus 21 ~P~~l~~~~~~~~sv~l~W~~p~~~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n 100 (134)
T 2edx_A 21 PPQKVMCVSMGSTTVRVSWVPPPADSRNGVITQYSVAYEAVDGEDRGRHVVDGISREHSSWDLVGLEKWTEYRVWVRAHT 100 (134)
T ss_dssp CSEEEEEECSSSSEEEEEEECCCSTTCSSCEEEEEEEEEESSSSCCCCEEECCCBTTCSEEEEESCCTTCEEEEEEEEEE
T ss_pred CCcccEEEeCCCCEEEEEecCCCccCCCCceeEEEEEEEECCCCCcccEEEEeeCCCccEEEeCCCCCCCEEEEEEEEEc
Confidence 3478999999999999999998 467899999999988753221111112236778999999999999999999999
Q ss_pred cceeCCCCCceEEeccCCCCCCCCceeEEEEec
Q psy574 622 GSVDGKPSNLRAVRTLECEPSGVPQLTDPVLLN 654 (977)
Q Consensus 622 ~~g~g~~s~~~~~~T~~~~P~~~P~~v~~~~~~ 654 (977)
..|.|++|..+.++|.+++|+.+|.++++...+
T Consensus 101 ~~G~g~~S~~~~~~T~~~~P~~~P~~l~~~~~s 133 (134)
T 2edx_A 101 DVGPGPESSPVLVRTDEDVPSGPPRKVESGPSS 133 (134)
T ss_dssp TTBCCCCCCCEEEECCCCSSCCCCCCCCCCCCC
T ss_pred CCCcCCCCCCEEeecCCCCCCCCCceeEEEEcc
Confidence 999999999999999999998899999876554
No 482
>2ed8_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal cancer suppressor, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=2.5e-13 Score=121.92 Aligned_cols=99 Identities=23% Similarity=0.329 Sum_probs=84.8
Q ss_pred ccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCcceEEEEecCCcCeEEecCCCCCceEEEE
Q psy574 636 TLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRYSVS 715 (977)
Q Consensus 636 T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~ 715 (977)
+.+++|. +|.++++...+.++|.|+|++| ...+|.|++|+|+|+..+...+..... ..++++|.+|+|++.|.|+
T Consensus 3 s~~~~P~-~P~~l~~~~~~~~si~l~W~~p--~~~~g~i~~Y~v~~~~~~~~~~~~~~~--~~~~~~i~~L~p~t~Y~~~ 77 (106)
T 2ed8_A 3 SGSSGPG-PVENLQAVSTSPTSILITWEPP--AYANGPVQGYRLFCTEVSTGKEQNIEV--DGLSYKLEGLKKFTEYSLR 77 (106)
T ss_dssp CCCCCCC-CCEEEEEECSSTTEEEEEEECC--SSCSSCCCEEEEEEEETTTCCEEEEEE--CSSCEEEESCCTTCEEEEE
T ss_pred CCCCCCc-CCceeEEEecCCCEEEEEECCC--CCCCCCeeEEEEEEEECCCCceEEEeC--CccEEEECCCCCCCEEEEE
Confidence 4567887 8899999999999999999999 577899999999998865443333333 4789999999999999999
Q ss_pred EEEEcCCCcCCCCCceEEeecCCC
Q psy574 716 LAATNRAGTGPYSRPALLSLTSGP 739 (977)
Q Consensus 716 V~A~~~~G~g~~S~~~~~~t~~~~ 739 (977)
|+|+|.+|.|++|.++.++|.+..
T Consensus 78 V~A~n~~G~g~~S~~~~~~T~~~~ 101 (106)
T 2ed8_A 78 FLAYNRYGPGVSTDDITVVTLSDS 101 (106)
T ss_dssp EEEECSSCEEEECCCEEEECCCCC
T ss_pred EEEEeCCccCCCcCCEEEEcCCCC
Confidence 999999999999999999997655
No 483
>2gys_A Cytokine receptor common beta chain; dimer of interlocking chains of fibronectin-III domains, FOU fibronectin-III domains PER chain; HET: NAG FUC BMA NDG; 2.70A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1gh7_A* 3cxe_A* 1egj_A* 1c8p_A
Probab=99.48 E-value=1.1e-12 Score=149.39 Aligned_cols=271 Identities=11% Similarity=0.055 Sum_probs=167.6
Q ss_pred CCCCCeEEeeCCCceEEEEEcCCCCCCcccceEEEEEeecCCC--CCCCCCCCCcccEEEec---eecCcCeEEEEccCC
Q psy574 400 PPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLP--SSSPSGDTATATWVRVA---TNVPSPILTVTNLTV 474 (977)
Q Consensus 400 ~P~~~~v~~~~~~sv~lsW~~p~~~~~~~i~~Y~I~~~~~~~~--~~~~~~~~~~~~w~~~~---~~~~~~~~~i~~L~p 474 (977)
+|.++.|.......+++.|.++.. ......|.+.|+..... ...|... ....|.... -....+.+....+.-
T Consensus 5 ~~~~l~C~~~~~~~~~C~W~~~~~--~~~~~~~~l~y~~~~~~~~~~~C~~~-~~~~~~~~~~~~~~~~~C~~~~~~~~~ 81 (419)
T 2gys_A 5 PLQTLRCYNDYTSHITCRWADTQD--AQRLVNVTLIRRVNEDLLEPVSCDLS-DDMPWSACPHPRCVPRRCVIPCQSFVV 81 (419)
T ss_dssp HHHHCEEEECSSSEEEEEEEEEHH--HHTTCCEEEEEEEETTEEEECCEEEC-SCCTTSCCCSSSEEEEEEEEECSCCCT
T ss_pred cCCCceEEeCCCEEEEEEeeCCcC--CCCcccEEEEeecCCcCCccceeccc-cCcccccCCCCCccccEeEeCCcceee
Confidence 356778887777899999998765 22235688877642211 0000000 000111110 001233344455666
Q ss_pred CCeEEEEEEEEcCCCCCCCCCCCceEEeeccccccccccCCcceeecCCCCCCCcchHHHHhhcccccCCceEEEEEeeE
Q psy574 475 GLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKP 554 (977)
Q Consensus 475 ~t~Y~~~V~a~n~~G~s~~S~~s~~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~g~~~~~~~~~l~~~~~~~~~~l~~~~ 554 (977)
...|.|+|+|.|..|.. ..+.. .....|. | |.+|++..
T Consensus 82 ~~~~~~~v~~~~~~~~~------~~~~~---~~~v~p~---------p------------------------P~~l~v~~ 119 (419)
T 2gys_A 82 TDVDYFSFQPDRPLGTR------LTVTL---TQHVQPP---------E------------------------PRDLQIST 119 (419)
T ss_dssp TCEEEEEEEESSCCCEE------EEEEG---GGSBCCC---------C------------------------CEEEEEEE
T ss_pred ecccEEEEeCCcccccc------ceEcH---HHcccCC---------C------------------------CCceEEEe
Confidence 77999999997755531 11111 1111111 2 36788887
Q ss_pred eCCCeEEEEEEecCC--------CccceEEEEEEecCCCCCceEEEEeecCccceEEEC--CCCCCcEEEEEEEEeecc-
Q psy574 555 MTSTSVKLTWEILNT--------DYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVT--GLAHYSRYEFFLVPFFGS- 623 (977)
Q Consensus 555 ~~~tsv~lsW~~p~~--------~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~--~L~p~t~Y~~~V~a~n~~- 623 (977)
.+ +.+.|+|++|.. .....|.|+|+..+ ..|....... .....+.+. +|.|++.|+|+|+|.+..
T Consensus 120 ~~-~~~~l~W~~p~~~~~~~~~~~~~l~Y~v~yr~~~--~~w~~~~~~~-~~~~~~~~~~~~L~p~~~Y~~rVra~~~~g 195 (419)
T 2gys_A 120 DQ-DHFLLTWSVALGSPQSHWLSPGDLEFEVVYKRLQ--DSWEDAAILL-SNTSQATLGPEHLMPSSTYVARVRTRLAPG 195 (419)
T ss_dssp ET-TEEEEEEECCC-----CCSCGGGEEEEEEEEETT--SCSTTCEEEE-ESSSEEEECTTTCCTTCEEEEEEEEEECTT
T ss_pred cC-CeEEEEECCCccccccchhccCceEEEEEEccCC--CChhheeeec-ccceEEEechhhcCCCCeEEEEEEEecCCC
Confidence 76 699999999922 23568999999886 5665443321 234556666 999999999999999964
Q ss_pred --eeCC---CCCceEEeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCC-c-----ceEE-
Q psy574 624 --VDGK---PSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNN-S-----ALIN- 691 (977)
Q Consensus 624 --g~g~---~s~~~~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~-~-----~~~~- 691 (977)
+.|. +|..+.+.|.++.|. +|.++.+...+.+++.+.|+++ ....+. .+|.|+|+.... . ....
T Consensus 196 ~~~~G~wS~WS~~~~~~t~~~~~~-~p~~l~c~~~~~~~l~c~W~~~--~~~~~~-~~y~l~y~~~~~~g~~~~~~~~~C 271 (419)
T 2gys_A 196 SRLSGRPSKWSPEVCWDSQPGDEA-QPQNLECFFDGAAVLSCSWEVR--KEVASS-VSFGLFYKPSPDAGSAVLLREEEC 271 (419)
T ss_dssp SSCCBCCCCCCCCEEEECCCCCTT-SCEEEEEEECSSSEEEEEEEEE--HHHHTT-CCEEEEEECC-----CCCCCCEEC
T ss_pred CCCCcccCCCCCceeeeccccccC-CCceEEEEECCceEEEeEEECC--CCCCCc-eeEEEEEEecCccccccCcccccC
Confidence 3344 567789999998864 8899999988889999999986 221221 459999986421 1 1111
Q ss_pred --EEec-C------CcCeEEecCCCCCceEEEEEEEEcCCC
Q psy574 692 --MTVS-A------STPTLLLTNLSAGIRYSVSLAATNRAG 723 (977)
Q Consensus 692 --~~~~-~------~~~~~~l~~L~p~t~Y~~~V~A~~~~G 723 (977)
.... . ....+.+.+|.+.+.|.|+|.|.+..|
T Consensus 272 ~~~~~~~~~~~~~~~~c~~~~~~l~~~~~y~i~V~a~~~~~ 312 (419)
T 2gys_A 272 SPVLREGLGSLHTRHHCQIPVPDPATHGQYIVSVQPRRAEK 312 (419)
T ss_dssp CCEEEECCTTTEEEEEEEEECSCTTTCCEEEEEEEECCCCE
T ss_pred CCcccccCCCcceeEEeEEECccCCccCEEEEEEEEccCCc
Confidence 1111 1 123567888999999999999975443
No 484
>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A
Probab=99.48 E-value=2.4e-13 Score=162.38 Aligned_cols=166 Identities=22% Similarity=0.294 Sum_probs=123.5
Q ss_pred CceEEeCCCeEEEEEEe-cccCceEEEEEECCeeCC-------------CCceEEeccceEEEccCccCCCeEEEEEEEe
Q psy574 107 KDTTVSASSIIVFECSV-GGDAVLTVHWKRLGSAMP-------------EDRMSVLPSRSLQLSDVRLEDAGEYVCEAEN 172 (977)
Q Consensus 107 ~~~~v~~G~~v~l~C~v-~g~p~~~i~W~k~~~~l~-------------~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n 172 (977)
.+..+.+|++++|.|.+ .+.|.+.|.|+|++..+. .++..+..+++|.|.+++.+|+|.|+|.+.|
T Consensus 374 ~~~~~~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~~~D~G~Y~C~~~n 453 (581)
T 3o3u_N 374 QNITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLPNGSLFLPAVGIQDEGIFRCQAMN 453 (581)
T ss_dssp EEEEEETTSCEEECCTTCCSSSSCEEEEEEEETTSSSCEECCSCCSSGGGGTSEECTTSCEEESSCCGGGCEEEEEEEEC
T ss_pred cccceecCCcEEEeeeecCCCCCceEEEEEcCCeeEEEEecccCCCCCcCCcEEEcCCceEEEeccccccCeEEEEEEEc
Confidence 45678999999999999 788999999999876321 2356666778999999999999999999999
Q ss_pred CCeeE-EEEEEEEEeeCCe-EEecCCCcEEeeCCeE-EEEEEEec-CCCCeEEEEEcCeeeeecCCCccccEEE----EE
Q psy574 173 AVGKI-SASATLTVQMAPI-VRERPSDLRLEVGRDA-VFLCGIEG-SPPPSTFWMLEGNRSLIYPGDRVDNIQA----EI 244 (977)
Q Consensus 173 ~~g~~-~~~~~L~V~~~p~-~~~~p~~~~v~~G~~v-~L~C~~~g-~p~~~i~W~~~g~~~~~~~~~~~~~~~~----~~ 244 (977)
..+.. ...+.|.|..+|. ..+.+....+.+|... .|.|.+.+ .|.+.|.|+++|..+... ..++.+ ..
T Consensus 454 ~~~~~~~~~~~l~V~~~~~~p~i~~~~~~~~~~~~~~~l~C~~~~~~P~~~i~W~~~g~~l~~~----~~~~~~~~~~~~ 529 (581)
T 3o3u_N 454 RNGKETKSNYRVRVYQIPGKPEIVDSASELTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPLVPN----EKGVSVKEQTRR 529 (581)
T ss_dssp TTSCEEEEEEEEEEEBCCCCCEEESCCSEECTTSCEEEEEEEEEEEBSCCEEEEEETTEECCTT----STTEEEEEEEEE
T ss_pred CCCceeEEEEEEEEEcCCCCCEEEcCCcccccCCceeEEEEECCCCCCCCeEEEEECCEECCCC----CCeEEEEeeeEE
Confidence 98876 7889999986442 2333344446666555 66999988 699999999999877431 122211 11
Q ss_pred c-cCC----ceEEEEeecc-cCCCCeEEEEEEEcCCCce
Q psy574 245 T-SDG----MNLLKIQNVS-RTAAPLIILCLGVNAAGSD 277 (977)
Q Consensus 245 ~-~~g----~s~L~I~~v~-~~d~G~Y~~C~a~n~~g~~ 277 (977)
. ..| .++|.|..++ .++.|.|+ |.|.|..+..
T Consensus 530 ~~~~g~y~~~s~L~i~~~~~~d~~~~y~-C~~~n~~~~~ 567 (581)
T 3o3u_N 530 HPETGLFTLQSELMVTPARGGDPRPTFS-CSFSPGLPRH 567 (581)
T ss_dssp CTTTCCEEEEEEEEECCCTTSCSCCCEE-EEEECSSCSS
T ss_pred cCCCceEEEEEEEEEEeccccCCCceEE-EEEeccCCCC
Confidence 1 122 2579999998 44588999 9999986543
No 485
>2edy_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=4.1e-14 Score=126.38 Aligned_cols=101 Identities=24% Similarity=0.398 Sum_probs=86.5
Q ss_pred eccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCcceEEEEecCCcCeEEecCCCCCceEEE
Q psy574 635 RTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRYSV 714 (977)
Q Consensus 635 ~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~ 714 (977)
+|.+++|+.+|.++++...+.++|.|+|++|+....+|.|.+|+|+|+..+... ...+....++++|.+|+|++.|.|
T Consensus 2 ~t~e~~pp~~P~~l~~~~~~~~si~l~W~~p~~~~~~g~i~~Y~i~~~~~~~~~--~~~~~~~~~~~~i~~L~p~t~Y~~ 79 (103)
T 2edy_A 2 SSGSSGPSGFPQNLHVTGLTTSTTELAWDPPVLAERNGRIISYTVVFRDINSQQ--ELQNITTDTRFTLTGLKPDTTYDI 79 (103)
T ss_dssp TTTCCCCSCCCEEEECSSBCSSCEECEEECCCTTSCSSCCCEEEEEEEETTSCC--EEEEEESSSCCEECSCCTTCCEEE
T ss_pred CCCCCCCCCCCeeeEEEecCCCEEEEEECCCCCcCCCCcEeEEEEEEEECCCCc--cEEEcCCcceEEEcCCCCCCEEEE
Confidence 467888888999999988889999999999976678899999999998865432 233455788999999999999999
Q ss_pred EEEEEcCCCcCCCCCceEEeecC
Q psy574 715 SLAATNRAGTGPYSRPALLSLTS 737 (977)
Q Consensus 715 ~V~A~~~~G~g~~S~~~~~~t~~ 737 (977)
+|+|+|.+|.|++|+++.++|.+
T Consensus 80 ~V~A~n~~G~g~~S~~~~~~T~p 102 (103)
T 2edy_A 80 KVRAWTSKGSGPLSPSIQSRTMP 102 (103)
T ss_dssp ECCEECSSCBCCCCCCCCCCCCC
T ss_pred EEEEECCCCCCCCCCCEEEEecc
Confidence 99999999999999999887753
No 486
>1x5j_A Neogenin; RGM binding, fibronectin type III domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=99.48 E-value=1.7e-13 Score=124.30 Aligned_cols=99 Identities=16% Similarity=0.154 Sum_probs=81.6
Q ss_pred CCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCee----eeEEEEEEEecCCcceEEEEecCCcCeEEecCCCCCceEE
Q psy574 638 ECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGV----IRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRYS 713 (977)
Q Consensus 638 ~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~----i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~ 713 (977)
+..|+.+|.+|++...++++|.|+|.+|. ..++. +.+|+|+|+...........+..+.++++|.+|+|+|.|.
T Consensus 5 ~~~pp~~P~~l~~~~~s~tsi~lsW~~p~--~~~~~~~~~~~~Y~v~y~~~~~~~~~~~~~~~~~~~~~i~gL~P~T~Y~ 82 (113)
T 1x5j_A 5 SSGPMMPPVGVQASILSHDTIRITWADNS--LPKHQKITDSRYYTVRWKTNIPANTKYKNANATTLSYLVTGLKPNTLYE 82 (113)
T ss_dssp SCCCCCCCEEEEEEEEETTEEEEEEECTT--SCSSSCCCSSCEEEEEECBSSSSSCCCEECCBCSSEEEEESCCTTCEEC
T ss_pred cCCCCCCCcceEEEEecCCEEEEEecCCC--CccccccCcCceEEEEEEECCCCCeEEEEEecCcCEEEeCCCCCCcEEE
Confidence 45677799999999999999999999994 33444 4599999987432223334455678899999999999999
Q ss_pred EEEEEEcCCCcCCCCCceEEeecCC
Q psy574 714 VSLAATNRAGTGPYSRPALLSLTSG 738 (977)
Q Consensus 714 ~~V~A~~~~G~g~~S~~~~~~t~~~ 738 (977)
|+|+|+|.+|.|++|.++.++|.+.
T Consensus 83 f~V~A~~~~G~g~~S~~v~~~T~~~ 107 (113)
T 1x5j_A 83 FSVMVTKGRRSSTWSMTAHGTTFEL 107 (113)
T ss_dssp CEEEEECSSCBCCCCCCCCEECCCS
T ss_pred EEEEEecCCccCCCcccEEeeccCC
Confidence 9999999999999999999999876
No 487
>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}
Probab=99.47 E-value=2e-13 Score=144.12 Aligned_cols=166 Identities=13% Similarity=0.179 Sum_probs=114.8
Q ss_pred EeCCCceEEeCCCeEEEEEEecccCceEEEEEECC--eeC----------------CCC-ceEEeccce--EEEccCccC
Q psy574 103 IRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLG--SAM----------------PED-RMSVLPSRS--LQLSDVRLE 161 (977)
Q Consensus 103 ~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~--~~l----------------~~~-~~~~~~~~~--L~I~~v~~~ 161 (977)
...|....+.+|++++|.|.+.+.+.+.+.|+|.. ... ..+ |+.+..+.. |.|.+++.+
T Consensus 5 ~q~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~L~I~~v~~~ 84 (253)
T 3to4_D 5 EQNPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTELRLQVANMS 84 (253)
T ss_dssp EEECSEEEEESSCCEEEEEECSCTTCCCEEEEEEETTCCEEEEEEECSTTCEEEEEETTEEEEEECCSSSCCEEEEESCS
T ss_pred EeCCCeEEEeCCCcEEEEEEeCCCCcceEEEEEECCCCCcEEEEEECCCcceecCCccCCcEEEEeCCCCeEEEccCChh
Confidence 34567788999999999999988888999999831 110 011 454443322 999999999
Q ss_pred CCeEEEEEEEeCCe------eEEEEEEEEEe------eCCeEEec-CCCcEEeeCCeEEEEEEEec-CCCC-eEEEEEcC
Q psy574 162 DAGEYVCEAENAVG------KISASATLTVQ------MAPIVRER-PSDLRLEVGRDAVFLCGIEG-SPPP-STFWMLEG 226 (977)
Q Consensus 162 D~G~Y~C~a~n~~g------~~~~~~~L~V~------~~p~~~~~-p~~~~v~~G~~v~L~C~~~g-~p~~-~i~W~~~g 226 (977)
|+|.|+|.+.+..+ .....+.|.|. .+|.+... +....+..|+.++|.|.+.+ .|.+ .+.|+++|
T Consensus 85 DsG~Y~C~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g 164 (253)
T 3to4_D 85 QGRTLYCTSSADHWTNTGQLYFGEGSKLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNG 164 (253)
T ss_dssp SCEEEEEEEECSCCSTTCCEEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETT
T ss_pred hCeEEEEEEecCCCCcccceEECCCEEEEEecCCCCCCCCeEEEeCCChhhcccCCceEEEEEEceEECCcEEEEEEECC
Confidence 99999999986543 23344567775 45555443 33334446789999999988 6666 89999999
Q ss_pred eeeeecCCC-----------ccccEEEEEccCCceEEEEeecccCC-CCeEEEEEEEcCCC
Q psy574 227 NRSLIYPGD-----------RVDNIQAEITSDGMNLLKIQNVSRTA-APLIILCLGVNAAG 275 (977)
Q Consensus 227 ~~~~~~~~~-----------~~~~~~~~~~~~g~s~L~I~~v~~~d-~G~Y~~C~a~n~~g 275 (977)
..+...... ..+.+.+. +.|.|.....+| .|.|+ |.|.|...
T Consensus 165 ~~l~~~~~~~~~~~~~~~~~~~g~~~~~------s~l~i~~~~~~d~~~~yt-C~v~h~~l 218 (253)
T 3to4_D 165 KEVHSGVSTDPQPLKEQPALNDSRYALS------SRLRVSATFWQNPRNHFR-CQVQFYGL 218 (253)
T ss_dssp EEECTTEEECSSCEESSTTCTTCCEEEE------EEEEEEHHHHTCTTCEEE-EEEEECCB
T ss_pred EECCCceecccccccccccCCCCCEEEE------EEEEECHHHhccCCCEEE-EEEEeCCC
Confidence 876321100 12333333 278888888887 77999 99998754
No 488
>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Probab=99.47 E-value=3.4e-13 Score=119.38 Aligned_cols=89 Identities=22% Similarity=0.440 Sum_probs=78.5
Q ss_pred cCCeEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCeeCCCC---ceEEec---cceEEEccCccCCCeEEEEEEE
Q psy574 98 VKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED---RMSVLP---SRSLQLSDVRLEDAGEYVCEAE 171 (977)
Q Consensus 98 ~~P~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~~l~~~---~~~~~~---~~~L~I~~v~~~D~G~Y~C~a~ 171 (977)
.||.|...|.++.+.+|+++.|.|.+.|.|.|.|.|+|++..+... ++.+.. ..+|.|.+++.+|+|.|+|.|.
T Consensus 4 ~PP~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~ 83 (100)
T 3knb_A 4 IPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLG 83 (100)
T ss_dssp EEEEECCCCSEEEEETTSEEEEEEEEEEESCCEEEEEETTEECCTTGGGTEEEEECSSEEEEEESSCCGGGCEEEEEEEE
T ss_pred CCCEEEeCCCcEEEeCCCeEEEEEEEEEecCCEEEEEECceEeeeeccceeeeecccceEEEEEcCCCccCCEEEEEEEE
Confidence 3678888899999999999999999999999999999999998643 455442 2479999999999999999999
Q ss_pred eCCeeEEEEEEEEEe
Q psy574 172 NAVGKISASATLTVQ 186 (977)
Q Consensus 172 n~~g~~~~~~~L~V~ 186 (977)
|..|..+..+.|.|.
T Consensus 84 N~~G~~~~~~~l~V~ 98 (100)
T 3knb_A 84 NEFGSDSATVNIHIR 98 (100)
T ss_dssp ETTEEEEEEEEEEEE
T ss_pred ECCCEEEEEEEEEEE
Confidence 999999999999986
No 489
>2yrz_A Integrin beta-4; GP150, CD104 antigen, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=1.6e-13 Score=126.01 Aligned_cols=106 Identities=16% Similarity=0.230 Sum_probs=86.3
Q ss_pred CCCCCceEEeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCcceEEEEe-cCCcCeEEec
Q psy574 626 GKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTV-SASTPTLLLT 704 (977)
Q Consensus 626 g~~s~~~~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~~~~~~~~-~~~~~~~~l~ 704 (977)
+..+..+.++|.+++|. +|.++++...+.++|.|+|++|. .. |.|++|+|+|+..+...+....+ ....+.++|.
T Consensus 3 s~~~~~~~~~t~~~~P~-~P~~l~~~~~~~~sv~l~W~~p~--~~-g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~i~ 78 (118)
T 2yrz_A 3 SGSSGSHDSRLTAGVPD-TPTRLVFSALGPTSLRVSWQEPR--CE-RPLQGYSVEYQLLNGGELHRLNIPNPAQTSVVVE 78 (118)
T ss_dssp CCCCSCCTTSSSCSCCC-CCCCCEECCCBTTEEEEECCCCC--CS-SCEEEEEEEEEBSSSCCEEEEEESCTTCCEEEEE
T ss_pred CCCCCcceeecCCCCCC-CCCceEEEeCCCCEEEEEeCCCC--CC-CCccEEEEEEEECCCCceEEEEcCCCCcCEEEeC
Confidence 44556678899999997 78899998889999999999984 33 79999999999865433444433 4678999999
Q ss_pred CCCCCceEEEEEEEEcCCCcCCCCCc-eEEee
Q psy574 705 NLSAGIRYSVSLAATNRAGTGPYSRP-ALLSL 735 (977)
Q Consensus 705 ~L~p~t~Y~~~V~A~~~~G~g~~S~~-~~~~t 735 (977)
+|+|++.|.|+|+|+|.+|.|++|+. +.+.+
T Consensus 79 ~L~p~t~Y~~~V~A~n~~G~g~~S~~~~~~~t 110 (118)
T 2yrz_A 79 DLLPNHSYVFRVRAQSQEGWGREREGVITIES 110 (118)
T ss_dssp SCCTTCEEEEEEEEEESSCEEEEEEEEEECCC
T ss_pred CCCCCCEEEEEEEEEcCCcCCCCcCCceEeCC
Confidence 99999999999999999999999984 44433
No 490
>1axi_B HGHBP, growth hormone receptor; complex (hormone-receptor), complex (hormone-receptor) compl; 2.10A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1a22_B 1kf9_B 1hwg_B 1hwh_B 3hhr_B 2aew_A
Probab=99.46 E-value=4.5e-13 Score=139.16 Aligned_cols=189 Identities=12% Similarity=0.088 Sum_probs=121.6
Q ss_pred CCCCCCCCCeEEeeCCCceEEEEEcCCCCCCcc-cceEEEEEeecCCCCCCCCCCCCcccEEEece----ecCcCeEEEE
Q psy574 396 TYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSS-LLGYQVEMYSRPLPSSSPSGDTATATWVRVAT----NVPSPILTVT 470 (977)
Q Consensus 396 ~~p~~P~~~~v~~~~~~sv~lsW~~p~~~~~~~-i~~Y~I~~~~~~~~~~~~~~~~~~~~w~~~~~----~~~~~~~~i~ 470 (977)
.+|++|.++.+......+++++|.++.. ++.+ ...|.+.|....... ....|..+.. ....+.+...
T Consensus 28 ~pP~~P~~l~C~~~~~~~~~c~W~p~~~-~~~~~~~~y~l~Y~~~~~~~-------~~~~~~~C~~~~~~~~~~C~~~~~ 99 (236)
T 1axi_B 28 NSSGEPKFTKCRSPERETFSCHWTDEVH-HGTKNEGPIQLFYTRRNTQE-------WTQEWKECPDYVSAGENSCYFNSS 99 (236)
T ss_dssp ----CCCEEEEEBSSSSCEEEEECCC---------CSCEEEEEECC-------------CCEECSCSSTTCTTEEEECGG
T ss_pred CCCCCCcCCeEEeCCCCEEEEEecCCCC-CCCCCCceEEEEEEeCCCCc-------CCCceeeCCCCCCCCCEEEEECCc
Confidence 4689999998888888999999997554 4433 368888887543220 0012333321 2234556677
Q ss_pred ccCCCCeEEEEEEEEcCCCCCCCCCCCceEEeeccccccccccCCcceeecCCCCCCCcchHHHHhhcccccCCceEEEE
Q psy574 471 NLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELT 550 (977)
Q Consensus 471 ~L~p~t~Y~~~V~a~n~~G~s~~S~~s~~~~~~~~~p~~~p~~~~~~~~~~~P~~~~~g~~~~~~~~~l~~~~~~~~~~l 550 (977)
+|.+++.|.|+|.| | .+.+. ...+ .......|+ | |.++
T Consensus 100 ~l~~~~~Y~~~V~a-N-~~~s~------~~~~-~~~~~v~p~---------p------------------------P~~l 137 (236)
T 1axi_B 100 FTSIAIPYCIKLTS-N-GGTVD------EKCF-SVDEIVQPD---------P------------------------PIAL 137 (236)
T ss_dssp GCCSSSEEEEEEEE-T-TEEEE------EEEE-EGGGGBCCC---------C------------------------CEEE
T ss_pred CCcccceEEEEEEE-C-CccCC------CeEe-ecccccccC---------C------------------------Cccc
Confidence 89999999999999 8 22221 1111 011111122 2 2566
Q ss_pred E--eeEeCC----CeEEEEEEecC-----CC-ccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEE
Q psy574 551 E--VKPMTS----TSVKLTWEILN-----TD-YIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLV 618 (977)
Q Consensus 551 ~--~~~~~~----tsv~lsW~~p~-----~~-~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~ 618 (977)
. +...+. ..|.|+|++|. ++ .+..|.|+|+..+ ...|..... ...+++.|.+|+|++.|.|+|+
T Consensus 138 ~~~~~~~s~~~~~~~l~lsW~~P~~~~~~~g~~~l~Yevry~~~~-~~~w~~~~~---~~~~~~~l~~L~p~t~Y~vqVR 213 (236)
T 1axi_B 138 NWTLLNVSLTGIHADIQVRWEAPRNADIQKGWMVLEYELQYKEVN-ETKWKMMDP---ILTTSVPVYSLKVDKEYEVRVR 213 (236)
T ss_dssp EEEECSCCSSCSEEEEEEEEECCTTSCTTTTSCCEEEEEEEEETT-CSSCEECCC---BSSSEEEEEEEETTSCEEEEEE
T ss_pred EEEEEecccCCCCceEEEEECCCCCccccCCceeeEEEEEEEECC-CCceEEEec---cCCCEEEEeccCCCCEEEEEEE
Confidence 4 444433 35999999993 23 5789999999987 467765432 3468899999999999999999
Q ss_pred Eeecce--eCCCCCceEEeccC
Q psy574 619 PFFGSV--DGKPSNLRAVRTLE 638 (977)
Q Consensus 619 a~n~~g--~g~~s~~~~~~T~~ 638 (977)
|.+..| .|.+|..+.++|.+
T Consensus 214 a~~~~gg~ws~WS~~~~~~~p~ 235 (236)
T 1axi_B 214 SKQRNSGNYGEFSEVLYVTLPQ 235 (236)
T ss_dssp EEETTSSCCCCCCCCEEECCCC
T ss_pred EEECCCCCcCCCCCCEEEECCC
Confidence 999888 88999999998875
No 491
>1x5a_A Ephrin type-A receptor 1; tyrosine-protein kinase receptor, ESK, fibronectin type III (FN3) domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.1.2.1
Probab=99.46 E-value=4.3e-13 Score=120.31 Aligned_cols=98 Identities=20% Similarity=0.288 Sum_probs=80.5
Q ss_pred EeccCCCCCCCCceeEEEEecCcEEEEEe--eCCCCCCCCeeeeEEEEEEEecCCcceEEEEecCCcCeEEecCCCCCce
Q psy574 634 VRTLECEPSGVPQLTDPVLLNATSVLLKW--KPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIR 711 (977)
Q Consensus 634 ~~T~~~~P~~~P~~v~~~~~~~~sv~v~W--~~p~~~~~ng~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~ 711 (977)
..|.+++|+ +|.++++...+.++|.|+| .+| ...||. .+|+|+|+... ... ...+. .+.++|.+|+|++.
T Consensus 3 ~~T~~~~P~-~p~~l~~~~~~~~sv~l~W~~~~P--~~~ng~-~~Y~v~y~~~~-~~~-~~~~~--~~~~~i~~L~p~t~ 74 (107)
T 1x5a_A 3 SGSSGAESL-SGLSLKLVKKEPRQLELTWAGSRP--RNPGGN-LSYELHVLNQD-EEW-HQMVL--EPRVLLTKLQPDTT 74 (107)
T ss_dssp CTTTTCCCC-CSCCCCEEEEETTEEEEECCCCCS--SCCSSC-CEEEEEEECSS-CEE-EEEES--SSEEEEESCCSSCE
T ss_pred ccCCCCCCC-CCCceEEEecCCCEEEEEECCCCC--CCCCCc-eEEEEEEEeCC-CCc-eEEEe--cceEEECCCCCCCE
Confidence 357888887 6679999999999999999 777 778999 99999998852 111 12222 23399999999999
Q ss_pred EEEEEEEEcCCCcCCCCCceEEeecCCC
Q psy574 712 YSVSLAATNRAGTGPYSRPALLSLTSGP 739 (977)
Q Consensus 712 Y~~~V~A~~~~G~g~~S~~~~~~t~~~~ 739 (977)
|.|+|+|+|.+|.|++|.++.++|.+..
T Consensus 75 Y~f~V~A~~~~G~g~~S~~~~~~T~~~~ 102 (107)
T 1x5a_A 75 YIVRVRTLTPLGPGPFSPDHEFRTSPPS 102 (107)
T ss_dssp EEEEEEEECSSSCCCCCCCEEEECCCCS
T ss_pred EEEEEEEECCCccCCCCCCEEEEECCCC
Confidence 9999999999999999999999987654
No 492
>3iu4_H CHP3 FAB heavy chain; antibody, ganglioside, idiotype, immune system; 1.75A {Mus musculus} PDB: 1ibg_H* 3iy6_B
Probab=99.46 E-value=1.4e-13 Score=145.97 Aligned_cols=170 Identities=15% Similarity=0.261 Sum_probs=108.2
Q ss_pred cccceEEeCCCcEEEEEECCCCC--CCCeEEEEeCC-----EEe-----------ecCCCceEEEecCc-----EEEEcC
Q psy574 11 QPKSQRVAAGDTALLECGPPRGH--PEPTLVWKKNG-----HPI-----------DFENSKRLRLVDGT-----NLAIQD 67 (977)
Q Consensus 11 ~p~~~~v~~G~~v~L~C~~~~g~--P~~~v~W~k~g-----~~l-----------~~~~~~r~~~~~~g-----~L~I~~ 67 (977)
+|..+.+.+|++|+|.|.+ .+. ....|.|+|.. +.+ .....+|+.+..++ +|.|.+
T Consensus 6 ~~~~v~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~ 84 (263)
T 3iu4_H 6 ESGPGLVAPSQSLSITCTV-SGFSLSRYSVHWVRQPPGKGLEWLGMIWGGGSTDYNSALKSRLSISKDNSKSQVFLKMNS 84 (263)
T ss_dssp EECCSEECTTSCEEEEEEE-ESSCGGGSCEEEEEECTTSCCEEEEEECTTSCEEECGGGTTCEEEEEEGGGTEEEEEECS
T ss_pred CCCCEEEcCCCCEEEEEEe-ccccCCceEEEEEEECCCCCcEEEEEEeCCCcEeeCcccCCCEEEEecCCCCEEEEEECC
Confidence 4557899999999999998 332 24689999732 111 01124677775332 499999
Q ss_pred CCCCCCeEEEEEEEecCc------e-eeeEeEEEEEE----cCCeEEeCCCceEEeCCCeEEEEEEeccc-C-ceEEEEE
Q psy574 68 SRKTDDGRYQCVVKNVAG------T-RESTDAVLRVL----VKPYIIRGPKDTTVSASSIIVFECSVGGD-A-VLTVHWK 134 (977)
Q Consensus 68 v~~~D~G~Y~C~a~n~~g------~-~~s~~~~l~V~----~~P~~~~~p~~~~v~~G~~v~l~C~v~g~-p-~~~i~W~ 134 (977)
++.+|+|.|.|.+.+..+ . .....+.|.|. .+|.+...+....+.+|+.++|.|.+.+. | .+.|.|
T Consensus 85 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~~~~P~~~~v~W- 163 (263)
T 3iu4_H 85 LQTDDTAMYYCARSGVREGRAQAWFAYWGQGTLVTVSAASTKGPSVFPLAPSSKGSTSGTAALGCLVKDYFPEPVTVSW- 163 (263)
T ss_dssp CCGGGCEEEEEEEEECC---CEEEEEEECCCEEEEECSSCCBCCEEEEECCCCCC----EEEEEEEEEEEBSSCCEEEE-
T ss_pred CCHHHCEEEEEEEEeCCCCccccccceeCCceEEEEecccCCCCEEEEccCccccccCCcEEEEEEEEeEeCCceEEEE-
Confidence 999999999999987531 1 11233467774 34555533333345689999999999764 4 368999
Q ss_pred ECCeeCCCC----ceEEec------cceEEEccCccCCCeEEEEEEEeCCeeEEEEEEEE
Q psy574 135 RLGSAMPED----RMSVLP------SRSLQLSDVRLEDAGEYVCEAENAVGKISASATLT 184 (977)
Q Consensus 135 k~~~~l~~~----~~~~~~------~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~L~ 184 (977)
++..+... ...... ...|.|.....+| |.|+|.+.|..+.......+.
T Consensus 164 -~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~~~ 221 (263)
T 3iu4_H 164 -NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVE 221 (263)
T ss_dssp -GGGTBCTTEEECCCEECTTSCEEEEEEEEEETTHHHH-CCCEEEEEEGGGTEEEEEECC
T ss_pred -CCcccCCceeecCceECCCCCEEEEEEEEECHhHcCC-CEEEEEEEECCCCcceeEEEc
Confidence 54433221 011111 2468898888888 999999999876544444443
No 493
>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...
Probab=99.45 E-value=4.1e-13 Score=140.27 Aligned_cols=170 Identities=18% Similarity=0.245 Sum_probs=113.8
Q ss_pred EEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCe--e---C-------------CCCceEEec----cceEEEccCc
Q psy574 102 IIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGS--A---M-------------PEDRMSVLP----SRSLQLSDVR 159 (977)
Q Consensus 102 ~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~--~---l-------------~~~~~~~~~----~~~L~I~~v~ 159 (977)
+...|..+.+.+|++++|.|.+. .+.+.+.|+|++. . + ..+|+.+.. +.+|.|.+++
T Consensus 2 v~q~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~ 80 (238)
T 1bec_A 2 VTQSPRNKVAVTGGKVTLSCQQT-NNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQEQFSLILELAT 80 (238)
T ss_dssp EEEECSEEEEETTCCEEEEEEES-SCCSEEEEEEECTTSCEEEEEEEEETTEEEECSCCTTCEEECCSSSEEEEEESSCC
T ss_pred cccCCCeeEEeCCCcEEEEEEeC-CCCceEEEEEECCCCCEEEEEEEeCCCcccCCCccceEEEEecCCCEEEEEEecCC
Confidence 34567788999999999999995 4578999999641 1 0 134555542 3589999999
Q ss_pred cCCCeEEEEEEEeCCe-----eEEEEEEEEEee------CCeEEe-cCCCcEEeeCCeEEEEEEEecC-CCC-eEEEEEc
Q psy574 160 LEDAGEYVCEAENAVG-----KISASATLTVQM------APIVRE-RPSDLRLEVGRDAVFLCGIEGS-PPP-STFWMLE 225 (977)
Q Consensus 160 ~~D~G~Y~C~a~n~~g-----~~~~~~~L~V~~------~p~~~~-~p~~~~v~~G~~v~L~C~~~g~-p~~-~i~W~~~ 225 (977)
.+|+|.|+|.+.+..+ .....+.|.|.. +|.+.. .|....+.+|+.++|.|.+.+. |.+ .+.|+++
T Consensus 81 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~~ 160 (238)
T 1bec_A 81 PSQTSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVN 160 (238)
T ss_dssp GGGCEEEEEEEESCTTCGGGCEECCCEEEEEESCGGGCBCCEEEEECCCSTTCSSSCSCSEEEEEEEEBSCCEEEEEEET
T ss_pred cccCEEEEEEEecCCCCccccccCCCEEEEEeccCCCCCCCceEEECCChHHcccCCceEEEEEEeeEeCCCcEEEEEEC
Confidence 9999999999998631 122345677764 565554 3555567789999999999986 655 8999999
Q ss_pred CeeeeecCCCccccEEEEEccCCc----eEEEEeecccCC-CCeEEEEEEEcCCCc
Q psy574 226 GNRSLIYPGDRVDNIQAEITSDGM----NLLKIQNVSRTA-APLIILCLGVNAAGS 276 (977)
Q Consensus 226 g~~~~~~~~~~~~~~~~~~~~~g~----s~L~I~~v~~~d-~G~Y~~C~a~n~~g~ 276 (977)
|..+.... .... ......++. +.|.|......| .|.|+ |.|.|....
T Consensus 161 g~~~~~~~--~~~~-~~~~~~~g~~~~~s~L~i~~~~~~d~~~~yt-C~v~~~~l~ 212 (238)
T 1bec_A 161 GKEVHSGV--STDP-QAYKESNYSYCLSSRLRVSATFWHNPRNHFR-CQVQFHGLS 212 (238)
T ss_dssp TEEECTTE--EECS-SCEEEETTEEEEEEEECCCHHHHTCTTCEEE-EEEEECCCC
T ss_pred CEECCCce--eccc-ceEeCCCCCEEEEEEEEEcHHHhccCCCeEE-EEEEcCCCC
Confidence 98763210 0000 001111232 245555555444 67899 999997543
No 494
>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...
Probab=99.45 E-value=6.5e-13 Score=140.07 Aligned_cols=170 Identities=16% Similarity=0.203 Sum_probs=117.6
Q ss_pred eEEeCCCceEEeCCCeEEEEEEecccCceEEEEEECCe--e---C-------------CCCceEEec----cceEEEccC
Q psy574 101 YIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGS--A---M-------------PEDRMSVLP----SRSLQLSDV 158 (977)
Q Consensus 101 ~~~~~p~~~~v~~G~~v~l~C~v~g~p~~~i~W~k~~~--~---l-------------~~~~~~~~~----~~~L~I~~v 158 (977)
.+...|..+.+.+|++++|.|.+. .+.+.+.|+|+.. . + ..+|+.+.. +.+|.|.++
T Consensus 5 ~v~q~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v 83 (252)
T 1oga_E 5 GITQSPKYLFRKEGQNVTLSCEQN-LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSA 83 (252)
T ss_dssp CEECSCSEEEEETTCCEEECCEEC-SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSC
T ss_pred cceEcCCeEEEcCCCcEEEEEEeC-CCCCEEEEEEECCCCCeEEEEEEccCccccCCccCCcEEEEecCCCEEEEEECcC
Confidence 455667888999999999999995 4578999999631 1 0 134665542 358999999
Q ss_pred ccCCCeEEEEEEEeCC---eeEEEEEEEEEe------eCCeEEec-CCCcEEeeCCeEEEEEEEecC-CCC-eEEEEEcC
Q psy574 159 RLEDAGEYVCEAENAV---GKISASATLTVQ------MAPIVRER-PSDLRLEVGRDAVFLCGIEGS-PPP-STFWMLEG 226 (977)
Q Consensus 159 ~~~D~G~Y~C~a~n~~---g~~~~~~~L~V~------~~p~~~~~-p~~~~v~~G~~v~L~C~~~g~-p~~-~i~W~~~g 226 (977)
+.+|+|.|.|.+.+.. ......+.|.|. .+|.+... |....+.+|+.++|.|.+.+. |.+ .+.|+++|
T Consensus 84 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~~g 163 (252)
T 1oga_E 84 QKNPTAFYLCASSSRSSYEQYFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNG 163 (252)
T ss_dssp CSCCCEEEEEEEESSTTSCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETT
T ss_pred ChhhCEEEEEEEecCCccceeECCCEEEEEecccCCCCCCeEEEECCChhhhccCCceEEEEEEeeEcCCCcEEEEEECC
Confidence 9999999999999861 122233457775 35666553 444456689999999999985 654 89999999
Q ss_pred eeeeecCC-----------CccccEEEEEccCCceEEEEeecccC-CCCeEEEEEEEcCCCcee
Q psy574 227 NRSLIYPG-----------DRVDNIQAEITSDGMNLLKIQNVSRT-AAPLIILCLGVNAAGSDL 278 (977)
Q Consensus 227 ~~~~~~~~-----------~~~~~~~~~~~~~g~s~L~I~~v~~~-d~G~Y~~C~a~n~~g~~~ 278 (977)
..+..... ...+.+.+. +.|.|...... |.|.|+ |.+.|......
T Consensus 164 ~~l~~~~~~~~~~~~~~~~~~~gt~~~~------s~L~i~~~~~~d~~~~yt-C~v~~~~l~~~ 220 (252)
T 1oga_E 164 KEVHSGVSTDPQPLKEQPALNDSRYSLS------SRLRVSATFWQNPRNHFR-CQVQFYGLSEN 220 (252)
T ss_dssp EEECSSEEECSSCEESCTTSTTCCEEEE------EEEEEEHHHHTCTTCEEE-EEEEECCBCTT
T ss_pred EECCCCcccccccccccccCCCCCEEEE------EEEEECHHHhccCCCEEE-EEEEcCCCCCC
Confidence 87632100 011223222 26888877664 577899 99999865443
No 495
>2dm4_A Sortilin-related receptor; beta-sandwich, sorting protein-related receptor containing LDLR class A repeats, sorla; NMR {Homo sapiens}
Probab=99.45 E-value=5e-13 Score=120.43 Aligned_cols=99 Identities=21% Similarity=0.342 Sum_probs=82.5
Q ss_pred ccCCCCCCCCceeEEEE--ecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCcceEEEEecCCcCeEEecCCCCCceEE
Q psy574 636 TLECEPSGVPQLTDPVL--LNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRYS 713 (977)
Q Consensus 636 T~~~~P~~~P~~v~~~~--~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~ 713 (977)
+.+++|+ +|.++++.. .+.++|.|+|++| ...+|.|++|+|+|+..+...+... ....+.++|.+|+|++.|.
T Consensus 3 s~~~~P~-~P~~l~~~~~~~~~~sv~l~W~~p--~~~~g~i~~Y~v~~~~~~~~~~~~~--~~~~~~~~l~~L~p~t~Y~ 77 (108)
T 2dm4_A 3 SGSSGPD-APRNLQLSLPREAEGVIVGHWAPP--IHTHGLIREYIVEYSRSGSKMWASQ--RAASNFTEIKNLLVNTLYT 77 (108)
T ss_dssp CCCCCTT-SCEEEEEECCTTCSSCEEEEEECC--SCCSSCEEEEEEEEEETTCSCCEEE--EESSSEEEECSCCSSCEEE
T ss_pred CCCCCCc-CCcCeEEEEeccCCCEEEEEEcCC--CCCCCcEEEEEEEEEECCCCCeEEe--cCCccEEEeCCCCCCCEEE
Confidence 3456776 889998876 5788999999999 6889999999999998654333333 3356799999999999999
Q ss_pred EEEEEEcCCCcCCCCCceEEeecCCC
Q psy574 714 VSLAATNRAGTGPYSRPALLSLTSGP 739 (977)
Q Consensus 714 ~~V~A~~~~G~g~~S~~~~~~t~~~~ 739 (977)
|+|+|+|.+|.|++|+++.++|....
T Consensus 78 ~~V~A~n~~G~g~~S~~~~~~T~~~~ 103 (108)
T 2dm4_A 78 VRVAAVTSRGIGNWSDSKSITTIKGS 103 (108)
T ss_dssp EEEEEEESSCEEEECCCEEEECCSCS
T ss_pred EEEEEECCCceeCCCCCEEEECCCCC
Confidence 99999999999999999999986544
No 496
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}
Probab=99.45 E-value=4.7e-13 Score=118.64 Aligned_cols=95 Identities=25% Similarity=0.468 Sum_probs=81.7
Q ss_pred cccccceecccceEEeCCCcEEEEEECCCCCCCCeEEEEeCCEEeecCCCceEEEecCc--EEEEcCCCCCCCeEEEEEE
Q psy574 3 LLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGT--NLAIQDSRKTDDGRYQCVV 80 (977)
Q Consensus 3 ~l~~~~~~~p~~~~v~~G~~v~L~C~~~~g~P~~~v~W~k~g~~l~~~~~~r~~~~~~g--~L~I~~v~~~D~G~Y~C~a 80 (977)
..+|.|...|.++.+.+|++++|.|.+ .|.|.+.|.|+|||..+......++....++ .|.|.+++.+|+|.|+|.|
T Consensus 3 ~~~P~~~~~p~~~~~~~G~~~~l~C~~-~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 81 (100)
T 2kdg_A 3 MGPPRFIQVPENMSIDEGRFCRMDFKV-SGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVA 81 (100)
T ss_dssp CEEEECCCCCCCEEEETTCCEEEEEEC-EEESCCEEEEEETTEEECCCSSSCEEEETTTEEEEEESSCCGGGCEEEEEEE
T ss_pred CCCCeEEeCCCCEEecCCCEEEEEEEE-EeeCCCEEEEEECCEECcCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEE
Confidence 457889999999999999999999999 7899999999999999966555566666565 7999999999999999999
Q ss_pred EecCceeeeEeEEEEEEcC
Q psy574 81 KNVAGTRESTDAVLRVLVK 99 (977)
Q Consensus 81 ~n~~g~~~s~~~~l~V~~~ 99 (977)
.|..|. .+..+.|.|..+
T Consensus 82 ~n~~g~-~~~~~~l~V~~~ 99 (100)
T 2kdg_A 82 KNRAGE-ATFTVQLDVLAK 99 (100)
T ss_dssp EETTEE-EEEEEEEEEECC
T ss_pred EcCCCe-EEEEEEEEEEec
Confidence 999987 456778888754
No 497
>2dn7_A Receptor-type tyrosine-protein phosphatase F; LAR protein, leukocyte antigen related, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=99.44 E-value=4.4e-13 Score=120.56 Aligned_cols=100 Identities=20% Similarity=0.281 Sum_probs=83.7
Q ss_pred eccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCcceEEEEecCCcCeEEecCCCCCceEEE
Q psy574 635 RTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRYSV 714 (977)
Q Consensus 635 ~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~ 714 (977)
+|.+++|..|+ +.+...+.++|.|+|++| ...+|.|.+|.|+|+..+...+....+....++++|.+|+|++.|.|
T Consensus 2 ~T~~~~P~~p~--~~v~~~~~~sv~l~W~~p--~~~~g~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~ 77 (107)
T 2dn7_A 2 SSGSSGPGRPT--MMISTTAMNTALLQWHPP--KELPGELLGYRLQYCRADEARPNTIDFGKDDQHFTVTGLHKGTTYIF 77 (107)
T ss_dssp TTCCCCCCCCE--EEEEECSTTEEEEEEECC--SSCSSCCCEEEEEEEETTCSSCEEEEEETTCCEEEEECCCTTCEEEE
T ss_pred CCCCCCCCCCc--EeEEecCCCEEEEEECCC--CCCCCceeEEEEEEEECCCCCCEEEEeCCCccEEEeCCCCCCCEEEE
Confidence 57888998554 666667889999999998 67889999999999986655555567778889999999999999999
Q ss_pred EEEEEcCCCcCCCCCceEEeecCCC
Q psy574 715 SLAATNRAGTGPYSRPALLSLTSGP 739 (977)
Q Consensus 715 ~V~A~~~~G~g~~S~~~~~~t~~~~ 739 (977)
+|+|+|.+|.|++|. ..+.|....
T Consensus 78 ~V~A~n~~G~g~~s~-~~~~T~~~~ 101 (107)
T 2dn7_A 78 RLAAKNRAGLGEEFE-KEIRTPEDL 101 (107)
T ss_dssp EEEEEETTEEEEEEE-EEEECCCCC
T ss_pred EEEEEcCCcccCCee-eEEeCCCCC
Confidence 999999999999998 556665443
No 498
>3t04_D Monobody 7C12; engineered binding protein, antibody mimic, protein-protein SH2 domain, ATP-binding, phosphoprotein; 2.10A {Homo sapiens}
Probab=99.44 E-value=9.1e-13 Score=117.28 Aligned_cols=89 Identities=22% Similarity=0.391 Sum_probs=78.6
Q ss_pred CCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecC-CcceEEEEecCCcCeEEecCCCCCceEEEEEEEEcC
Q psy574 643 GVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGN-NSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNR 721 (977)
Q Consensus 643 ~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~-~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~ 721 (977)
.+|.+|++...++++|.|+|++| ...||.|.+|+|.|+..+ ........+.++.++++|.+|+|++.|.|+|+|+|.
T Consensus 9 ~~P~~l~v~~~t~~Sv~lsW~~p--~~~~g~i~~Y~v~y~~~~~~~~~~~~~v~~~~ts~~l~~L~p~t~Y~~~V~A~~~ 86 (103)
T 3t04_D 9 SVPTKLEVVDATPTSLKISWDAY--YSSWQNVKYYRITYGETGGDSPVQEFTVPGYYSTATISGLKPGVDYTITVYAYDT 86 (103)
T ss_dssp CCCCSCEEEEEETTEEEEECTTT--TTTSCCCCEEEEEEEETTCSSCCEEEEEETTCCEEEECSCCTTCCEEEEEEEESC
T ss_pred CCCceeEEEecCCCEEEEEccCC--CCCCCccceEEEEEEECCCCCccEEEEcCCCcCEEEeCCCCCCCEEEEEEEEEeC
Confidence 48899999999999999999999 567899999999999864 334556677888999999999999999999999999
Q ss_pred --CCcCCCCCceEEe
Q psy574 722 --AGTGPYSRPALLS 734 (977)
Q Consensus 722 --~G~g~~S~~~~~~ 734 (977)
+|.|+ |.|+.+.
T Consensus 87 ~~~G~~~-S~p~~~~ 100 (103)
T 3t04_D 87 FFPGYEP-NSPISIN 100 (103)
T ss_dssp CCTTCCC-SCCEEEE
T ss_pred CCCCCCC-CCCEEEe
Confidence 99999 9998764
No 499
>3lb6_C IL-13, interleukin-13 receptor subunit alpha-2; cytokine, decoy, decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo sapiens} PDB: 3lb6_D*
Probab=99.44 E-value=2.7e-12 Score=143.51 Aligned_cols=179 Identities=11% Similarity=0.033 Sum_probs=120.8
Q ss_pred EEEEeeEeC-CCeEEEEEEecCC-----CccceEEEEEEecCCCCCceEEEEeecCccceEEECCCCCCcEEEEEEEEee
Q psy574 548 ELTEVKPMT-STSVKLTWEILNT-----DYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFF 621 (977)
Q Consensus 548 ~~l~~~~~~-~tsv~lsW~~p~~-----~~i~~Y~v~y~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~a~n 621 (977)
.++++.... .+++.|+|+++.. +.+..|+|+|+..+ ...|+..... .. ....++..++.|+|+|+|.|
T Consensus 36 ~nl~v~~~~~~~~v~LsW~p~~~~~~~~~~~~~Y~v~~~~~~-~~~w~~~~~~---~~--~~~~~~~l~~~y~~rV~a~~ 109 (380)
T 3lb6_C 36 QDFEIVDPGYLGYLYLQWQPPLSLDHFKECTVEYELKYRNIG-SETWKTIITK---NL--HYKDGFDLNKGIEAXIHTLL 109 (380)
T ss_dssp EEEEEECCSSSSEEEEEEECCCC------CCCEEEEEEEETT-CSSCEEEEES---SS--EEEEECCTTSCEEEEEEEEC
T ss_pred CceEEEecCcCceEEEEECCCCCccccccceEEEEEEECCCC-CCcceEEEec---cE--EEEEeecCCCceEEEEEeec
Confidence 789988776 7999999999932 45789999999987 5678877654 12 23345555999999999996
Q ss_pred c----ceeCCCCCc---eEEeccCCCCCCCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCc---ceEE
Q psy574 622 G----SVDGKPSNL---RAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNS---ALIN 691 (977)
Q Consensus 622 ~----~g~g~~s~~---~~~~T~~~~P~~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~---~~~~ 691 (977)
. .|.|.+|.. +...+.++.|+.+|++++....+.+++.++|+++. . .+...+|.|+|+..+.. ....
T Consensus 110 ~~~~~~g~g~~S~~s~~~~~~~~eg~P~~~P~nl~C~~~~~~~l~csW~p~~--~-~~~~~~Y~l~y~~~~~~~~~~C~~ 186 (380)
T 3lb6_C 110 PWQCTNGSEVQSSWAETTYWISPQGIPETXVQDMDCVYYNWQYLLCSWKPGI--G-VLLDTNYNLFYWYEGLDHALQCVD 186 (380)
T ss_dssp CHHHHSSSCCBCCCEEEEECCCCCSCTTSSCEEEEEEEETTTEEEEEEECC---------CCEEEEEECTTCSSCEECSE
T ss_pred CCcccCCccCccccchhhcccCCCCCCCCCCcEeEEEECCCcEEEEEEcCCC--C-CCCCccEEEEEEECCCCccccCCC
Confidence 5 566665543 33445778888899999999999999999999974 2 25678999999875421 1111
Q ss_pred EE-ecCCcCeEEec--CCCCCceEEEEEEEEcCCCcCCCCCceEEeec
Q psy574 692 MT-VSASTPTLLLT--NLSAGIRYSVSLAATNRAGTGPYSRPALLSLT 736 (977)
Q Consensus 692 ~~-~~~~~~~~~l~--~L~p~t~Y~~~V~A~~~~G~g~~S~~~~~~t~ 736 (977)
.. ..+...++.+. ++.+.+.|.|+|+|.|..|.+.. ..+.|.+.
T Consensus 187 ~~~~~g~~~~C~~~~~~~~~~~~Y~i~V~a~n~~G~~~s-~~~~~~~~ 233 (380)
T 3lb6_C 187 YIKADGQNIGCRFPYLEASDYKDFYICVNGSSENKPIRS-SYFTFQLQ 233 (380)
T ss_dssp EEEC--CEEEEECCCCTTCSSSCEEEEEEEC-----CCC-EEEEECGG
T ss_pred ccccCCceEEEEeCCCcccceeEEEEEEEEEcCCeeecc-ccEEEcHH
Confidence 11 22333456665 56888999999999998887653 33455443
No 500
>1v5j_A KIAA1355 protein, RSGI RUH-008; FN3 domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, cell adhesion; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=99.44 E-value=2e-13 Score=121.49 Aligned_cols=94 Identities=21% Similarity=0.262 Sum_probs=79.6
Q ss_pred CCCceeEEEEecCcEEEEEeeCCCCCCCCeeeeEEEEEEEecCCcc-eEEEEecCCcCeEEecCCCCCceEEEEEEEEcC
Q psy574 643 GVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSA-LINMTVSASTPTLLLTNLSAGIRYSVSLAATNR 721 (977)
Q Consensus 643 ~~P~~v~~~~~~~~sv~v~W~~p~~~~~ng~i~~Y~v~~~~~~~~~-~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~ 721 (977)
.+|.++++.. ..+++.|+|++| .+.++.|++|.|+|+..+..+ ..+..+..+.+++++.+|.+++.|.|||.|+|.
T Consensus 9 ~pP~~l~v~~-~~~sv~L~W~pP--~~~~~~I~gY~vey~~~~~~W~~~~~~~~~~~t~~~v~~L~pg~~Y~FRV~A~n~ 85 (108)
T 1v5j_A 9 SPPRGLVAVR-TPRGVLLHWDPP--ELVPKRLDGYVLEGRQGSQGWEVLDPAVAGTETELLVPGLIKDVLYEFRLVAFAG 85 (108)
T ss_dssp CCCEEEEEEE-CSSSEEEEEECC--SCCSSCCCBEEEEEEETTCCCEEEEEEECSSCCEEECCCCCTTSCEECCBEEEET
T ss_pred CCCcceEEEE-eCCEEEEEECCC--CCCCCCCcEEEEEEEeCCCCcEEeeeecCCCcCEEEeCCCCCCCEEEEEEEEEcC
Confidence 6999999876 567899999999 568899999999999843322 223345678999999999999999999999999
Q ss_pred CCcCCCCCceEEeecCCC
Q psy574 722 AGTGPYSRPALLSLTSGP 739 (977)
Q Consensus 722 ~G~g~~S~~~~~~t~~~~ 739 (977)
+|.|.+|+++.+.|....
T Consensus 86 ~G~s~pS~~~~v~T~~~~ 103 (108)
T 1v5j_A 86 SFVSDPSNTANVSTSGLS 103 (108)
T ss_dssp TEEEEECSCCCCCCSSCS
T ss_pred CCCcCCCCCEEEEeCCcc
Confidence 999999999999887654
Done!