RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy574
(977 letters)
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 316 bits (811), Expect = 6e-97
Identities = 99/438 (22%), Positives = 168/438 (38%), Gaps = 35/438 (7%)
Query: 2 SLLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGT 61
L F + K G EC G + W K+G + + + + +
Sbjct: 98 RKLPPSFARKLKDVHETLGFPVAFECRIN-GSEPLQVSWYKDGELLKDDANLQTSFIHNV 156
Query: 62 -NLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVL---VKPYIIRGPKDTTVSASSII 117
L I + ++ G+Y C N GT S+ A L + V P+ P ++
Sbjct: 157 ATLQILQTDQSHVGQYNCSASNPLGTASSS-AKLTLSEHEVPPFFDLKPVSVDLALGESG 215
Query: 118 VFECSVGGDAVLTVHWKRLGSAMPEDRMSVL----PSRSLQLSDVRLEDAGEYVCEAENA 173
F+C V G A + + W + + + + +L + V DAG+Y C A N
Sbjct: 216 TFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNV 275
Query: 174 VGKISASATLTVQMAPIVRERPSDLRL-EVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIY 232
GK S SA L VQ P ++ R+ + + C I GSP W + I
Sbjct: 276 AGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETE--IQ 333
Query: 233 PGDRVDNIQAEITSDGMNLLKIQNVSRT-AAPLIILCLGVNAAGSDLARASLTVSGPDPN 291
+ + + +L++ N+S + C NAAGS + SL V
Sbjct: 334 ESSKFRMSF----VESVAVLEMYNLSVEDSG--DYTCEAHNAAGSASSSTSLKV-----K 382
Query: 292 PPPVILFGPANQTLPLRSEARLRCQVRG--EGSVQWWRGEREVGSGPRVNVTGDG---SL 346
PPV P ++ L C+++G V W + +RE+ SG + + + S+
Sbjct: 383 EPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSI 442
Query: 347 VLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEP-STYPGPPTKPT 405
+ +V D GEY C + GS + S+ ++P F + ST G +
Sbjct: 443 HILNVDSADIGEYQCKASNDVGSDTCVGSITLKAPPR----FVKKLSDISTVVGEEVQLQ 498
Query: 406 LVNQTANGLTLAWSRNNQ 423
+ A +++AW ++
Sbjct: 499 ATIEGAEPISVAWFKDKG 516
Score = 281 bits (721), Expect = 4e-84
Identities = 91/384 (23%), Positives = 162/384 (42%), Gaps = 30/384 (7%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV-DGTNLAI 65
F ++P S +A G++ +C G + W K+ I + ++ LV + L +
Sbjct: 199 FFDLKPVSVDLALGESGTFKC-HVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTV 257
Query: 66 QDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDT-TVSASSIIVFECSVG 124
K D G+Y C NVAG + A L V P I+ + + V +EC +G
Sbjct: 258 LKVTKGDAGQYTCYASNVAGKDSCS-AQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIG 316
Query: 125 GDAVLTVHWKRLGSAMPED----RMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISAS 180
G + V W + + + E V L++ ++ +ED+G+Y CEA NA G S+S
Sbjct: 317 GSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSS 376
Query: 181 ATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNI 240
+L V+ P+ R++P + G D C ++G+PP W + + G +
Sbjct: 377 TSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKR--ELRSGKKY--- 431
Query: 241 QAEITSDGMNL-LKIQNVSRT-AAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILF 298
+I S+ + I NV C N GSD S+T+ PP +
Sbjct: 432 --KIMSENFLTSIHILNVDSADIG--EYQCKASNDVGSDTCVGSITL-----KAPPRFVK 482
Query: 299 GPANQTLPLRSEARLRCQVRGEGS--VQWWR-GEREVGSGPRVNVTGD---GSLVLTDVT 352
++ + + E +L+ + G V W++ V + ++ +L +
Sbjct: 483 KLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAE 542
Query: 353 KEDSGEYTCVVKSPHGSASWSASL 376
++G+YTC +K+ G+ A+L
Sbjct: 543 PANAGKYTCQIKNEAGTQECFATL 566
Score = 258 bits (661), Expect = 1e-75
Identities = 104/452 (23%), Positives = 170/452 (37%), Gaps = 62/452 (13%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGT-NLAIQ 66
F + A G+ L+C G PE + W K + + +++ + +L I
Sbjct: 8 FIEPLEHVEAAIGEPITLQC-KVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLVIN 66
Query: 67 DSRKTDDGRYQCVVKNVAGTRESTDAVLRV---LVKPYIIRGPKDTTVSASSIIVFECSV 123
+D G Y C +N G S+ AVL + + P R KD + + FEC +
Sbjct: 67 KVDHSDVGEYTCKAENSVGAVASS-AVLVIKERKLPPSFARKLKDVHETLGFPVAFECRI 125
Query: 124 GGDAVLTVHWKRLGSAMPED---RMSVL-PSRSLQLSDVRLEDAGEYVCEAENAVGKISA 179
G L V W + G + +D + S + +LQ+ G+Y C A N +G S+
Sbjct: 126 NGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTASS 185
Query: 180 SATLTVQ---MAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDR 236
SA LT+ + P +P + L +G F C + G+ P W + I PG
Sbjct: 186 SAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNRE--IRPGGN 243
Query: 237 VDNIQAEITSDGMNLLKIQNVSR------TAAPLIILCLGVNAAGSDLARASLTVSGPDP 290
+ L + V++ T C N AG D A L V P
Sbjct: 244 YKMTL----VENTATLTVLKVTKGDAGQYT-------CYASNVAGKDSCSAQLGVQEP-- 290
Query: 291 NPPPVILFGPANQTLPLRSEARLRCQVRGE--GSVQWWRGEREVGSGPRVNVT---GDGS 345
P I ++ + R C++ G V W++ E E+ + ++
Sbjct: 291 --PRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAV 348
Query: 346 LVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPT 405
L + +++ EDSG+YTC + GSAS S SL+ + P P P T
Sbjct: 349 LEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEP------------PVFRKKPHPVET 396
Query: 406 LVNQTAN---------GLTLAWSRNNQIGSSS 428
L + ++W ++ + S
Sbjct: 397 LKGADVHLECELQGTPPFQVSWHKDKRELRSG 428
Score = 205 bits (524), Expect = 6e-57
Identities = 65/285 (22%), Positives = 113/285 (39%), Gaps = 14/285 (4%)
Query: 7 EFRVQPK-SQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN-LA 64
F + + S+ V + EC G PE ++W K+ I + R+ V+ L
Sbjct: 292 RFIKKLEPSRIVKQDEHTRYEC-KIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLE 350
Query: 65 IQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVG 124
+ + D G Y C N AG+ S+ L+V P + P + + EC +
Sbjct: 351 MYNLSVEDSGDYTCEAHNAAGSASSS-TSLKVKEPPVFRKKPHPVETLKGADVHLECELQ 409
Query: 125 GDAVLTVHWKRLGSAMPED-RMSVLPS---RSLQLSDVRLEDAGEYVCEAENAVGKISAS 180
G V W + + + ++ S+ + +V D GEY C+A N VG +
Sbjct: 410 GTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCV 469
Query: 181 ATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNI 240
++T++ P ++ SD+ VG + IEG+ P S W + ++ D +
Sbjct: 470 GSITLKAPPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGE-IVRESDNI--- 525
Query: 241 QAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTV 285
S+ + L+ A C N AG+ A+L+V
Sbjct: 526 -WISYSENIATLQFSRAEPANAGKYT-CQIKNEAGTQECFATLSV 568
Score = 203 bits (519), Expect = 3e-56
Identities = 89/405 (21%), Positives = 148/405 (36%), Gaps = 54/405 (13%)
Query: 100 PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED---RMSVLP-SRSLQL 155
PY I + + I +C V G + + W + + + +M SL +
Sbjct: 6 PYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLVI 65
Query: 156 SDVRLEDAGEYVCEAENAVGKISASATLTVQ---MAPIVRERPSDLRLEVGRDAVFLCGI 212
+ V D GEY C+AEN+VG +++SA L ++ + P + D+ +G F C I
Sbjct: 66 NKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAFECRI 125
Query: 213 EGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVN 272
GS P W +G L+ + + L+I ++ C N
Sbjct: 126 NGSEPLQVSWYKDGE--LLKDDANLQTSF----IHNVATLQILQTDQSHVGQYN-CSASN 178
Query: 273 AAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG--EGSVQWWRGER 330
G+ + A LT+S PP P + L L +C V G + W + R
Sbjct: 179 PLGTASSSAKLTLSE--HEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNR 236
Query: 331 EVGSGPRVNVT---GDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIG 387
E+ G +T +L + VTK D+G+YTC + G S SA L + P P
Sbjct: 237 EIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEP--PR-- 292
Query: 388 FFRAPEPSTYPGPPTKPTLVNQTANG---LTLAWSRNNQIGSSSLLGYQVEMYSRPLPSS 444
F + + T G + + W ++ + S
Sbjct: 293 -FIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDET----------------EIQES 335
Query: 445 SPSGDTATATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHG 489
S R++ +L + NL+V + + A N+ G
Sbjct: 336 SK---------FRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAG 371
Score = 162 bits (412), Expect = 2e-42
Identities = 39/186 (20%), Positives = 71/186 (38%), Gaps = 10/186 (5%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN--LAI 65
FR +P G LEC +G P + W K+ + K + + + I
Sbjct: 387 FRKKPHPVETLKGADVHLEC-ELQGTPPFQVSWHKDKRELR-SGKKYKIMSENFLTSIHI 444
Query: 66 QDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGG 125
+ D G YQC N G+ + + P ++ D + + + ++ G
Sbjct: 445 LNVDSADIGEYQCKASNDVGSDTCV-GSITLKAPPRFVKKLSDISTVVGEEVQLQATIEG 503
Query: 126 DAVLTVHWKRLGSAMPED--RMSVLPS---RSLQLSDVRLEDAGEYVCEAENAVGKISAS 180
++V W + + + + + S +LQ S +AG+Y C+ +N G
Sbjct: 504 AEPISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQECF 563
Query: 181 ATLTVQ 186
ATL+V
Sbjct: 564 ATLSVL 569
Score = 120 bits (302), Expect = 2e-28
Identities = 50/320 (15%), Positives = 93/320 (29%), Gaps = 65/320 (20%)
Query: 188 APIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSD 247
P E + +G C ++G+P W E + + +
Sbjct: 5 PPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTK--LRSAPAYK----MQFKN 58
Query: 248 GMNLLKIQNVSRT-AAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLP 306
+ L I V + C N+ G+ + A L + PP +
Sbjct: 59 NVASLVINKVDHSDVG--EYTCKAENSVGAVASSAVLVIKERK--LPPSFARKLKDVHET 114
Query: 307 LRSEARLRCQVRG--EGSVQWWRGEREVGSGPRVNVT---GDGSLVLTDVTKEDSGEYTC 361
L C++ G V W++ + + + +L + + G+Y C
Sbjct: 115 LGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNC 174
Query: 362 VVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQT------ANG-- 413
+P G+AS SA L P P P + + ++ G
Sbjct: 175 SASNPLGTASSSAKLTLSEHEVP---------PFFDLKPVSVDLALGESGTFKCHVTGTA 225
Query: 414 -LTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNL 472
+ + W+++N+ + ++ + LTV +
Sbjct: 226 PIKITWAKDNR----------------EIRPGGN---------YKMTLVENTATLTVLKV 260
Query: 473 TV---GLTYTFLVRALNSHG 489
T G YT A N G
Sbjct: 261 TKGDAG-QYT--CYASNVAG 277
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 288 bits (739), Expect = 9e-89
Identities = 99/394 (25%), Positives = 153/394 (38%), Gaps = 33/394 (8%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQ 66
F +P G LL C P + WKK+G + R + + +L IQ
Sbjct: 23 HFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLPNGSLLIQ 82
Query: 67 D-----SRKTDDGRYQCVVK-NVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFE 120
+ K D+G YQC +G+ S A + V + + T ++ +
Sbjct: 83 NILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTESITAFMGDTVLLK 142
Query: 121 CSVGGDAVLTVHWKR----LGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVG- 175
C V GD + T+HW++ L + R+ VLPS +LQ+S ++ D+G Y C A N
Sbjct: 143 CEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQPGDSGVYRCSARNPAST 202
Query: 176 KISASATLTVQ------MAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRS 229
+ A + + +RPS++ G+DAV C + G PPPS W+
Sbjct: 203 RTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGE-EV 261
Query: 230 LIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPD 289
+ + + L I NV+ + C+ + A A LTV
Sbjct: 262 IQLRSKKY-----SLLGGSN--LLISNVTDDDSGTYT-CVVTYKNENISASAELTV---- 309
Query: 290 PNPPPVILFGPANQTLPLRSEARLRCQVRG--EGSVQWWRGEREVGSGPRVNVTGDGSLV 347
PP L P+N + C V G +V W + V + G +L
Sbjct: 310 -LVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGSNLR 368
Query: 348 LTDVTKEDSGEYTCVVKSPHGSASWSASLRFESP 381
+ V K D G Y CV ++ G+A SA L P
Sbjct: 369 ILGVVKSDEGFYQCVAENEAGNAQSSAQLIVPKP 402
Score = 243 bits (623), Expect = 3e-72
Identities = 84/293 (28%), Positives = 124/293 (42%), Gaps = 22/293 (7%)
Query: 6 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPID-FENSKRLRLVDGTNLA 64
F Q +S GDT LL+C G P PT+ W+KN ++ R+ ++ L
Sbjct: 122 LRFLSQTESITAFMGDTVLLKC-EVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQ 180
Query: 65 IQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKP------YIIRGPKDTTVSASSIIV 118
I + D G Y+C +N A TR +A +R+L P Y ++ P + V
Sbjct: 181 ISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAV 240
Query: 119 FECSVGGDAVLTVHWKRLGSAMP--EDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGK 176
EC V G + W R + + S+L +L +S+V +D+G Y C
Sbjct: 241 LECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNEN 300
Query: 177 ISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDR 236
ISASA LTV + P PS+L D F C + G P P+ WM G+ + P D
Sbjct: 301 ISASAELTVLVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDV--VIPSDY 358
Query: 237 VDNIQAEITSDGMNLLKIQNVSRT-AAPLIILCLGVNAAGSDLARASLTVSGP 288
+I L+I V ++ C+ N AG+ + A L V P
Sbjct: 359 F-----QIVGGSN--LRILGVVKSDEG--FYQCVAENEAGNAQSSAQLIVPKP 402
Score = 195 bits (497), Expect = 6e-55
Identities = 73/318 (22%), Positives = 119/318 (37%), Gaps = 26/318 (8%)
Query: 82 NVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDA-VLTVHWKRLGSAM 140
+ + + + P D ++ CS D V + WK+ G +
Sbjct: 5 SELESSHHH-HHHGGRRSLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLIL 63
Query: 141 P---EDRMSVLPSRSLQLSDV-----RLEDAGEYVCEAENAVG--KISASATLTVQMAPI 190
+DR LP+ SL + ++ D G Y CEA IS +A + V
Sbjct: 64 ALGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLR 123
Query: 191 VRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMN 250
+ + +G + C + G P P+ W PGD + + G
Sbjct: 124 FLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDS----RVVVLPSGA- 178
Query: 251 LLKIQNVSRT-AAPLIILCLGVNAAGSDLAR-ASLTV-SGPDPNPPPVILFGPANQTLPL 307
L+I + + + C N A + A + + S P + L P+N
Sbjct: 179 -LQISRLQPGDSG--VYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIE 235
Query: 308 RSEARLRCQVRGE--GSVQWWRGEREV-GSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVK 364
+A L C V G S W RGE + + ++ G +L++++VT +DSG YTCVV
Sbjct: 236 GKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVT 295
Query: 365 SPHGSASWSASLRFESPT 382
+ + S SA L P
Sbjct: 296 YKNENISASAELTVLVPP 313
Score = 120 bits (303), Expect = 2e-29
Identities = 53/281 (18%), Positives = 99/281 (35%), Gaps = 28/281 (9%)
Query: 170 AENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPP-PSTFWMLEGNR 228
+ + + + PSD G + + C E P W +G
Sbjct: 3 WGSELESSHHHHHHGGRRSLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLI 62
Query: 229 SLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLII----LCLG-VNAAGSDLAR-AS 282
+ DR + +G L IQN+ + C + +GS ++R A
Sbjct: 63 LALGMDDRK-----QQLPNGS--LLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAK 115
Query: 283 LTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG--EGSVQWWRGEREVGSGP---R 337
+ V+G P L + T + L+C+V G ++ W + ++++ P R
Sbjct: 116 VMVAG-----PLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSR 170
Query: 338 VNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGS-ASWSASLRFESPTNPNIGFFRAPEPST 396
V V G+L ++ + DSG Y C ++P + A +R S + + PS
Sbjct: 171 VVVLPSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSN 230
Query: 397 YPGPPTKPTLVNQTANG---LTLAWSRNNQIGSSSLLGYQV 434
K ++ +G + W R ++ Y +
Sbjct: 231 VIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSL 271
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 298 bits (764), Expect = 8e-88
Identities = 102/455 (22%), Positives = 161/455 (35%), Gaps = 61/455 (13%)
Query: 4 LREEFRVQPKSQRVAAGDTALLECGPPR--GHPEPTLVWKKNGHPIDF---ENSKRLRLV 58
+ + + + V G++A+++C P + W + F E + ++
Sbjct: 137 VAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVL 196
Query: 59 DGTNLAIQDSRKTDD-GRYQCVVKNVAG--TRESTDAVLRVLVKPYIIRGPK-------- 107
L I++ D YQC K+ TR S V+ +P PK
Sbjct: 197 PSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFD 256
Query: 108 DTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSR------SLQLSDVRLE 161
T S SS + C G V W + + VL R +L + D +E
Sbjct: 257 MKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVE 316
Query: 162 DAGEYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTF 221
D+G+Y+C N+VG S LTV + P ++ GR AVF C G+P +
Sbjct: 317 DSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVS 376
Query: 222 WMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARA 281
WM +G I + V L+I++V + + C N S A A
Sbjct: 377 WMKDGKA--IGHSESV--------------LRIESVKKEDKGMYQ-CFVRNDRESAEASA 419
Query: 282 SLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG--EGSVQWWRGEREVGSGPRV- 338
L + PPVI +T+ L+C G + W +++ + R
Sbjct: 420 ELKLG--GRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQ 477
Query: 339 -------NVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRA 391
N L +T V D G Y C+ KS G A SA L + R
Sbjct: 478 VGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLP-----YIRQ 532
Query: 392 PEPSTYPGPPTKPTLVNQTANG---LTLAWSRNNQ 423
E + +V G ++ W R+N+
Sbjct: 533 MEKKAI--VAGETLIVTCPVAGYPIDSIVWERDNR 565
Score = 267 bits (685), Expect = 6e-77
Identities = 88/392 (22%), Positives = 156/392 (39%), Gaps = 39/392 (9%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGT----- 61
R + + + G + L+C G+P P + W+ +G I N+ R ++
Sbjct: 431 VIRQAFQEETMEPGPSVFLKC-VAGGNPTPEISWELDGKKI--ANNDRYQVGQYVTVNGD 487
Query: 62 ---NLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIV 118
L I D G Y+C+ K+ G E + A L V PYI R + + A ++
Sbjct: 488 VVSYLNITSVHANDGGLYKCIAKSKVGVAEHS-AKLNVYGLPYI-RQMEKKAIVAGETLI 545
Query: 119 FECSVGGDAVLTVHWKRLGSAMPED-RMSVLPSRSLQLSDV-RLEDAGEYVCEAENAVGK 176
C V G + ++ W+R A+P + + V P+ +L + +V R D Y C A+N G
Sbjct: 546 VTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGTLIIENVERNSDQATYTCVAKNQEGY 605
Query: 177 -ISASATLTVQMAP-IVRERPSDLRLEVGRDAVFLCGIEGSPPPSTF-WMLEGNRSLIYP 233
S + V + P I+ + +VG+ C + G P W L+G I
Sbjct: 606 SARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDG--QAISE 663
Query: 234 GDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPP 293
+ + ++L I+ V + A C N AG L V P
Sbjct: 664 DLGITTSR---VGRRGSVLTIEAVEASHAGNFT-CHARNLAGHQQFTTPLNV-----YVP 714
Query: 294 PVILFGPANQTLPLRSEARLRCQVRG--EGSVQWWRG-------EREVGSGPRVNVTGDG 344
P + P ++ S+A++ C+ G + V W + +++ + V +G
Sbjct: 715 PRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVE-EG 773
Query: 345 SLVLTDVTKEDSGEYTCVVKSPHGSASWSASL 376
+L + ++ K + G Y C + GS + +
Sbjct: 774 TLHVDNIQKTNEGYYLCEAINGIGSGLSAVIM 805
Score = 256 bits (654), Expect = 1e-72
Identities = 82/396 (20%), Positives = 144/396 (36%), Gaps = 45/396 (11%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQ 66
++ P +Q V G A+ C G+P T+ W K+G I S L I+
Sbjct: 345 SAKIDPPTQTVDFGRPAVFTC-QYTGNPIKTVSWMKDGKAIGHSES---------VLRIE 394
Query: 67 DSRKTDDGRYQCVVKNVAGTRESTDAVLRVLV---KPYIIRGPKDTTVSASSIIVFECSV 123
+K D G YQC V+N + E++ A L++ P I + ++ T+ + +C
Sbjct: 395 SVKKEDKGMYQCFVRNDRESAEAS-AELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVA 453
Query: 124 GGDAVLTVHWKRLGSAMPED---------RMSVLPSRSLQLSDVRLEDAGEYVCEAENAV 174
GG+ + W+ G + + ++ L ++ V D G Y C A++ V
Sbjct: 454 GGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKV 513
Query: 175 GKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPG 234
G SA L V P +R + + G + C + G P S W + +
Sbjct: 514 GVAEHSAKLNVYGLPYIR-QMEKKAIVAGETLIVTCPVAGYPIDSIVWERDNR--ALPIN 570
Query: 235 DRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDL-ARASLTVSGPDPNPP 293
+ ++ +G L I+NV R + C+ N G + V P
Sbjct: 571 RKQ-----KVFPNGT--LIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVL----P 619
Query: 294 PVILFGPANQTLPLRSEARLRCQVRGE---GSVQWWRGEREVGSGPRVNVT----GDGSL 346
+I F + L C V G ++ W + + + + L
Sbjct: 620 RIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVL 679
Query: 347 VLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPT 382
+ V +G +TC ++ G ++ L P
Sbjct: 680 TIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVPP 715
Score = 228 bits (582), Expect = 6e-63
Identities = 90/435 (20%), Positives = 145/435 (33%), Gaps = 59/435 (13%)
Query: 8 FRVQPKS-QRVAAGDTALLECGPPRGHPEPTLVW-KKNGHPIDFENSKRLRLVDGT---- 61
F +P + + A +EC G+P P ++W + +G + R DG
Sbjct: 41 FLKEPTNRIDFSNSTGAEIEC-KASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFP 99
Query: 62 NLAIQDSRK-TDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFE 120
+D R+ Y C+ +N G+ S D +R +V Y V + V +
Sbjct: 100 PFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIK 159
Query: 121 CSV---GGDAVLTVHWKR------LGSAMPEDRMSVLPSRSLQLSDVRLEDA-GEYVCEA 170
C + D V V W A + + VLPS L + +V ED Y C
Sbjct: 160 CLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRT 219
Query: 171 ENAVG---KISASATLTVQMAPIVRERPSDLRLE--------VGRDAVFLCGIEGSPPPS 219
++ + ++SA+ V PI P + L LC +G P P
Sbjct: 220 KHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPV 279
Query: 220 TFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRT-AAPLIILCLGVNAAGSDL 278
W + + + + L I++ + LC+ N+ G +
Sbjct: 280 FRWYKFIEGT---TRKQAVVLNDRVKQVS-GTLIIKDAVVEDSG--KYLCVVNNSVGGES 333
Query: 279 ARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG--EGSVQWWRGEREVGSGP 336
LTV P P QT+ A CQ G +V W + + +
Sbjct: 334 VETVLTV-----TAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAI---- 384
Query: 337 RVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPST 396
+ L + V KED G Y C V++ SA SA L+ +P P
Sbjct: 385 ---GHSESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGRFDP---------PVI 432
Query: 397 YPGPPTKPTLVNQTA 411
+ +
Sbjct: 433 RQAFQEETMEPGPSV 447
Score = 194 bits (495), Expect = 1e-51
Identities = 71/290 (24%), Positives = 119/290 (41%), Gaps = 16/290 (5%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQD 67
+ Q + + + AG+T ++ C P G+P ++VW+++ + +++ ++ L I++
Sbjct: 529 YIRQMEKKAIVAGETLIVTC-PVAGYPIDSIVWERDNRALPI--NRKQKVFPNGTLIIEN 585
Query: 68 -SRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYII-RGPKDTTVSASSIIVFECSV-G 124
R +D Y CV KN G ++V+V P II ++ + CSV G
Sbjct: 586 VERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPG 645
Query: 125 GDAVLTVHWKRLGSAMPED-----RMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISA 179
GD L + W G A+ ED L + V AG + C A N G
Sbjct: 646 GDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQF 705
Query: 180 SATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDN 239
+ L V + P P+D G DA C +G P P W + PG+ D
Sbjct: 706 TTPLNVYVPPRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDT---PGEYKDL 762
Query: 240 IQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARAS-LTVSGP 288
+++ L + N+ +T LC +N GS L+ ++V
Sbjct: 763 KKSDNIRVEEGTLHVDNIQKTNEG-YYLCEAINGIGSGLSAVIMISVQAH 811
Score = 184 bits (469), Expect = 2e-48
Identities = 65/347 (18%), Positives = 104/347 (29%), Gaps = 32/347 (9%)
Query: 63 LAIQDSRKTDDGRYQCVVKNVAGTREST-DAVLRVLVKPYIIRGPKDT-TVSASSIIVFE 120
+ + + R + V G++ + P ++ P + S S+ E
Sbjct: 1 MNMPNERLKWLMLFAAVALIACGSQTLAANPPDADQKGPVFLKEPTNRIDFSNSTGAEIE 60
Query: 121 CSVGGDAVLTVHWKRLGSAMPED---RMSVLPSRSLQLSDVRLED------AGEYVCEAE 171
C G+ + + W R D + L R ED A Y C A
Sbjct: 61 CKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLAR 120
Query: 172 NAVGKI-SASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIE---GSPPPSTFWMLEGN 227
N G I S + +A + + G AV C I W +
Sbjct: 121 NQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEE 180
Query: 228 RSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSD------LARA 281
Y + + + G L I+ V C + + R
Sbjct: 181 E--NYFPGAEYDGKYLVLPSG--ELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRL 236
Query: 282 SLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRGEG--SVQWWRGEREVGSGPRVN 339
+T P V L +T S L C +G +W++ V
Sbjct: 237 VITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVV 296
Query: 340 VTG-----DGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESP 381
+ G+L++ D EDSG+Y CVV + G S L +P
Sbjct: 297 LNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAP 343
Score = 122 bits (307), Expect = 2e-28
Identities = 60/357 (16%), Positives = 103/357 (28%), Gaps = 52/357 (14%)
Query: 153 LQLSDVRLEDAGEYVCEAENAVGK--ISASATLTVQMAP-IVRERPSDLRLEVGRDAVFL 209
+ + + RL+ + A A G ++A+ Q P ++E + + A
Sbjct: 1 MNMPNERLKWLMLFAAVALIACGSQTLAANPPDADQKGPVFLKEPTNRIDFSNSTGAEIE 60
Query: 210 CGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIIL-- 267
C G+P P W+ G V ++ L +
Sbjct: 61 CKASGNPMPEIIWIRSD-------GTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQ 113
Query: 268 ---CLGVNAAGSDLAR-ASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG---- 319
CL N GS ++R + + + + A ++C +
Sbjct: 114 VYACLARNQFGSIISRDVHVRAV-----VAQYYEADVNKEHVIRGNSAVIKCLIPSFVAD 168
Query: 320 -EGSVQWWRGEREVG-----SGPRVNVTGDGSLVLTDVTKEDS-GEYTCVVKSPHGSAS- 371
V W E E + V G L + +V ED Y C K +
Sbjct: 169 FVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETR 228
Query: 372 WSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQT------ANGL---TLAWSRNN 422
SA+ T P P+ + K + T A G W +
Sbjct: 229 LSATKGRLVITEPISS--AVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFI 286
Query: 423 ---QIGSSSLLGYQVEMYSRPL--PSSSPSGDTATATWVRVATNVPSPILTVTNLTV 474
+ +L +V+ S L + D + ++ V N T LTV
Sbjct: 287 EGTTRKQAVVLNDRVKQVSGTLIIKDAVVE-D--SGKYLCVVNNSVGGESVETVLTV 340
Score = 83.4 bits (206), Expect = 2e-16
Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 7/101 (6%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPI-----DFENSKRLRLVDGT 61
+ ++P + A G A +EC G P+P + WKK D + S +R+ +GT
Sbjct: 716 RWILEPTDKAFAQGSDAKVEC-KADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGT 774
Query: 62 NLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYI 102
L + + +KT++G Y C N G+ S ++ V +
Sbjct: 775 -LHVDNIQKTNEGYYLCEAINGIGSGLSAVIMISVQAHHHH 814
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 251 bits (642), Expect = 3e-75
Identities = 85/390 (21%), Positives = 143/390 (36%), Gaps = 37/390 (9%)
Query: 8 FRVQPKSQRV---AAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLA 64
F +P + L C +G+P+P + WK NG +D R +VDG+ L
Sbjct: 8 FVQEPSHVMFPLDSEEKKVKLSC-EVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSLLI 66
Query: 65 IQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKP-YIIRGPKDTTVSASSIIVFECSV 123
++ D G YQC+ N GT S +A L+ + R +V +V C
Sbjct: 67 NNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGP 126
Query: 124 -GGDAVLTVHWKRLGSAMPED--RMSVLPSRSLQLSDVRLEDAGEYVCEAENAVG---KI 177
L+ W +D R + +L ++ V D G Y C N V +
Sbjct: 127 PPHSGELSYAWIFNEYPSYQDNRRFVSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVL 186
Query: 178 SASATLTVQMAPIVRER--------PSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRS 229
L ++ ++ E P + E G C G+P P+ W +
Sbjct: 187 GPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGK- 245
Query: 230 LIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPD 289
I R +L+I N + A C+ N+ G ++A+ LT
Sbjct: 246 PIARKARRHK--------SNGILEIPNFQQEDAG-SYECVAENSRGKNVAKGQLTFYA-- 294
Query: 290 PNPPPVILFGPANQTLPLRSEARLRCQVRG--EGSVQWWRGEREVGSGPRVNVTGDGSLV 347
P + + + + C+ G + + +W + + + R+ + G+L
Sbjct: 295 ---QPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIE-QGTLN 350
Query: 348 LTDVTKEDSGEYTCVVKSPHGSASWSASLR 377
+T V D+G Y CV ++ HG SA L
Sbjct: 351 ITIVNLSDAGMYQCVAENKHGVIFSSAELS 380
Score = 228 bits (583), Expect = 7e-67
Identities = 71/293 (24%), Positives = 122/293 (41%), Gaps = 26/293 (8%)
Query: 6 EEFRVQPKS-QRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLA 64
E F+ + +S V G +L CGPP E + W N +P +++++R + NL
Sbjct: 102 ENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPS-YQDNRRFVSQETGNLY 160
Query: 65 IQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVK----------PYIIRGPKDTTVSAS 114
I K+D G Y CVV N + ++++ ++ P+
Sbjct: 161 IAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKG 220
Query: 115 SIIVFECSVGGDAVLTVHWKRL-GSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENA 173
+ + EC G+ V T+ W+R G + + L++ + + EDAG Y C AEN+
Sbjct: 221 TTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAENS 280
Query: 174 VGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYP 233
GK A LT P + +D+ + + + C G P P+ W+ G+ +
Sbjct: 281 RGKNVAKGQLTFYAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDP--LLT 338
Query: 234 GDRVDNIQAEITSDGMNLLKIQNVSRT-AAPLIILCLGVNAAGSDLARASLTV 285
DR+ +I L I V+ + A + C+ N G + A L+V
Sbjct: 339 RDRI-----QIEQ---GTLNITIVNLSDAG--MYQCVAENKHGVIFSSAELSV 381
Score = 161 bits (408), Expect = 3e-43
Identities = 61/316 (19%), Positives = 102/316 (32%), Gaps = 30/316 (9%)
Query: 100 PYIIRGPKDTTVSASSI---IVFECSVGGDAVLTVHWKRLGSAMP--EDRMSVLPSRSLQ 154
P ++ P S + C V G+ + WK G+ + D + SL
Sbjct: 6 PVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSLL 65
Query: 155 LSDV-RLEDAGEYVCEAENAVGKI-SASATLTVQMAP-IVRERPSDLRLEVGRDAVFLCG 211
+++ + +DAG Y C A N+ G I S A L S + + G+ V LCG
Sbjct: 66 INNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCG 125
Query: 212 I-EGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLG 270
S S W+ R G L I V ++ C+
Sbjct: 126 PPPHSGELSYAWIFNE-YPSYQDNRRF-----VSQETGN--LYIAKVEKSDVGNYT-CVV 176
Query: 271 VNAAGSDLARASLTV------SGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG--EGS 322
N + T P + + P + +L C G +
Sbjct: 177 TNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPT 236
Query: 323 VQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPT 382
+ W R + + + +G L + + +ED+G Y CV ++ G L F +
Sbjct: 237 ILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQ- 295
Query: 383 NPNIGFFRAPEPSTYP 398
PN + +
Sbjct: 296 -PN--WVQIINDIHVA 308
Score = 156 bits (395), Expect = 2e-41
Identities = 52/176 (29%), Positives = 81/176 (46%), Gaps = 6/176 (3%)
Query: 12 PKSQRVAAGDTALLECGPPRGHPEPTLVWKK-NGHPIDFENSKRLRLVDGTNLAIQDSRK 70
P++ G T LEC G+P PT++W++ +G PI R +G L I + ++
Sbjct: 212 PETVPAEKGTTVKLEC-FALGNPVPTILWRRADGKPIA--RKARRHKSNGI-LEIPNFQQ 267
Query: 71 TDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLT 130
D G Y+CV +N G + L +P ++ D V+ + +EC G T
Sbjct: 268 EDAGSYECVAENSRGKNVAK-GQLTFYAQPNWVQIINDIHVAMEESVFWECKANGRPKPT 326
Query: 131 VHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQ 186
W + G + + +L ++ V L DAG Y C AEN G I +SA L+V
Sbjct: 327 YRWLKNGDPLLTRDRIQIEQGTLNITIVNLSDAGMYQCVAENKHGVIFSSAELSVI 382
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 247 bits (632), Expect = 8e-74
Identities = 91/399 (22%), Positives = 137/399 (34%), Gaps = 55/399 (13%)
Query: 8 FRVQPKSQRV---AAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLA 64
F QP +A + L C R +P T WK NG + R RLV G +
Sbjct: 7 FEEQPAHTLFPEGSAEEKVTLTC-RARANPPATYRWKMNGTELKMGPDSRYRLVAGDLVI 65
Query: 65 IQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDT-TVSASSIIVFECSV 123
+ D G YQCV N GT S +A LR +D ++ ++F CS
Sbjct: 66 SNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFTCSP 125
Query: 124 -GGDAVLTVHWKRLGSAMP----EDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKIS 178
L+ W R + +L ++ D G Y C A + + I+
Sbjct: 126 PPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFIT 185
Query: 179 ASATLTV------------QMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEG 226
S I + P+D G+ C G+P P W
Sbjct: 186 KSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLD 245
Query: 227 NRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSR------TAAPLIILCLGVNAAGSDLAR 280
++S+ + L IQNV C N G D +
Sbjct: 246 GSQTSK----------WLSSEPL--LHIQNVDFEDEGTYE-------CEAENIKGRDTYQ 286
Query: 281 ASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRGE--GSVQWWRGEREVGSGPRV 338
+ + P L + + S+ R C G+ +V+W R + + S R+
Sbjct: 287 GRIIIHA-----QPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRI 341
Query: 339 NVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLR 377
V+ G L + + EDSG Y CV ++ HG+ SA L
Sbjct: 342 EVS-GGELRFSKLVLEDSGMYQCVAENKHGTVYASAELT 379
Score = 223 bits (571), Expect = 3e-65
Identities = 63/300 (21%), Positives = 111/300 (37%), Gaps = 27/300 (9%)
Query: 1 ISLLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDF-ENSKRLRLVD 59
L+E + ++ G + C PP +P + W N P + +R
Sbjct: 97 FGFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQT 156
Query: 60 GTNLAIQDSRKTDDGRYQCVVKNVAG----TRESTDAVLRVLVK-------PYIIRGPKD 108
NL I + +D G Y C + + S + L + + + P D
Sbjct: 157 TGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPAD 216
Query: 109 TTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVC 168
T ++ EC G+ V + W++L + + L + +V ED G Y C
Sbjct: 217 TYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKW--LSSEPLLHIQNVDFEDEGTYEC 274
Query: 169 EAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNR 228
EAEN G+ + + + P + +D ++G D + C G P P+ W+ +G
Sbjct: 275 EAENIKGRDTYQGRIIIHAQPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQP 334
Query: 229 SLIYPGDRVDNIQAEITSDGMNLLKIQNVSRT-AAPLIILCLGVNAAGSDLARASLTVSG 287
+ +R+ S G L+ + + + C+ N G+ A A LTV
Sbjct: 335 --LASQNRI------EVSGGE--LRFSKLVLEDSG--MYQCVAENKHGTVYASAELTVQA 382
Score = 169 bits (429), Expect = 5e-46
Identities = 61/323 (18%), Positives = 102/323 (31%), Gaps = 44/323 (13%)
Query: 100 PYIIRGPKDTTV---SASSIIVFECSVGGDAVLTVHWKRLGSAMP--EDRMSVLPSRSLQ 154
P P T SA + C + T WK G+ + D L + L
Sbjct: 5 PVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDLV 64
Query: 155 -LSDVRLEDAGEYVCEAENAVGKI-SASATLTVQ-MAPIVRERPSDLRLEVGRDAVFLCG 211
+ V+ +DAG Y C A NA G + S A+L + E +++ G +F C
Sbjct: 65 ISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFTCS 124
Query: 212 I-EGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSR------TAAPL 264
P S W+L + I R S L I +
Sbjct: 125 PPPHYPALSYRWLLNEFPNFIPADGRR------FVSQTTGNLYIAKTEASDLGNYS---- 174
Query: 265 IILCLGVNAAG-------SDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQV 317
C + S ++ SL P + PA+ L C
Sbjct: 175 ---CFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFA 231
Query: 318 RGE--GSVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSAS 375
G ++W + + GS ++ + L + +V ED G Y C ++ G ++
Sbjct: 232 FGNPVPQIKWRKLD---GSQTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGR 288
Query: 376 LRFESPTNPNIGFFRAPEPSTYP 398
+ + P+ + +
Sbjct: 289 IIIHAQ--PD--WLDVITDTEAD 307
Score = 88.4 bits (219), Expect = 1e-18
Identities = 44/255 (17%), Positives = 69/255 (27%), Gaps = 31/255 (12%)
Query: 187 MAPIVRERPSDLRLEVG---RDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAE 243
P+ E+P+ G C +PP + W + G + P R
Sbjct: 3 YGPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRY------ 56
Query: 244 ITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLAR-ASLTVSGPDPNPPPVILFGPAN 302
G +L+ V A C+ NA G+ ++R ASL
Sbjct: 57 RLVAG-DLVISNPVKAKDAGSYQ-CVATNARGTVVSREASLRFGFL----QEFSAEERDP 110
Query: 303 QTLPLRSEARLRCQV---RGEGSVQWWRGEREV---GSGPRVNVTGDGSLVLTDVTKEDS 356
+ C S +W E G R G+L + D
Sbjct: 111 VKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDL 170
Query: 357 GEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQT------ 410
G Y+C S + S +F + + P L Q
Sbjct: 171 GNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECF 230
Query: 411 ANGL---TLAWSRNN 422
A G + W + +
Sbjct: 231 AFGNPVPQIKWRKLD 245
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 241 bits (616), Expect = 2e-71
Identities = 79/404 (19%), Positives = 130/404 (32%), Gaps = 53/404 (13%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLV-WKKNGHPIDFENSKRLRLVDGTNLAIQ 66
+ QP + +LEC G+ + WKK+G +++ D +L
Sbjct: 9 LKDQPAEVLFRENNPTVLEC-IIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFL 67
Query: 67 DSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSV-GG 125
+ +D+G YQC + AG S R + T +C +
Sbjct: 68 RPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPIEGRPFQLDCVLPNA 127
Query: 126 DAVLTVHWKRLGSAMPED--------RMSVLPSRSLQLSDVRLEDA---GEYVCEAENAV 174
+ WK+ S + R++ P +L + V ED +YVC A+NA
Sbjct: 128 YPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAA 187
Query: 175 G-KISASATLTVQM----------APIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWM 223
+ ++ P+ + D+ + G + C +P +
Sbjct: 188 VDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYF 247
Query: 224 LEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSR------TAAPLIILCLGVNAAGSD 277
G P DR+ + TS L + T C N G
Sbjct: 248 KNGKDVNGNPEDRI--TRHNRTSGKR--LLFKTTLPEDEGVYT-------CEVDNGVGKP 296
Query: 278 LAR-ASLTVSGPDPNPPPVILFGPANQ-TLPLRSEARLRCQVRGE--GSVQWWRGEREVG 333
LTV P P + + + C+V G +V W + +
Sbjct: 297 QKHSLKLTVVS-----APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPL- 350
Query: 334 SGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLR 377
SG R VT D LV+ V D G Y C + HG + ++
Sbjct: 351 SGGRATVT-DSGLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQ 393
Score = 216 bits (552), Expect = 2e-62
Identities = 65/308 (21%), Positives = 101/308 (32%), Gaps = 40/308 (12%)
Query: 6 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPID-----FENSKRLRLVDG 60
+ + G L+C P +P+P + WKK D + +R+
Sbjct: 101 IASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPD 160
Query: 61 TNLAIQDSRKTD---DGRYQCVVKNVAGTRESTDAVLRVLV----------KPYIIRGPK 107
NL K D +Y C KN A E + +P K
Sbjct: 161 GNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSK 220
Query: 108 DTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED------RMSVLPSRSLQLSDVRLE 161
D A + + C G + + ++ + G + + R + + L E
Sbjct: 221 DMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPE 280
Query: 162 DAGEYVCEAENAVGKI-SASATLTVQMAPIVRERPSD-LRLEVGRDAVFLCGIEGSPPPS 219
D G Y CE +N VGK S LTV AP ++P + ++ G+D C + G P P+
Sbjct: 281 DEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPN 340
Query: 220 TFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRT-AAPLIILCLGVNAAGSDL 278
W G R +T G L I+ V C N G
Sbjct: 341 VVWSHNAKPL---SGGRA-----TVTDSG---LVIKGVKNGDKG--YYGCRATNEHGDKY 387
Query: 279 ARASLTVS 286
+ V+
Sbjct: 388 FETLVQVN 395
Score = 173 bits (440), Expect = 2e-47
Identities = 60/310 (19%), Positives = 91/310 (29%), Gaps = 24/310 (7%)
Query: 94 LRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAV-LTVHWKRLGSAMPED---RMSVLP 149
L V P + P + ++ V EC + G+ + WK+ G +
Sbjct: 1 LPVDKYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKD 60
Query: 150 SRSLQLSDVRLEDAGEYVCEAENAVGKI-SASATLTVQMAPIVRERPSDLRLEVGRDAVF 208
SL + D G Y C AE G S + + + GR
Sbjct: 61 EGSLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPIEGRPFQL 120
Query: 209 LCGI-EGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIIL 267
C + P P W + P V + IT+ L V++ I
Sbjct: 121 DCVLPNAYPKPLITWKKRLSG--ADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYK 178
Query: 268 --CLGVNAAGSDLARAS------LTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG 319
C NAA + +T PV + + + C
Sbjct: 179 YVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMYGS 238
Query: 320 --EGSVQWWRGEREVGSGP-----RVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSA-S 371
G +++ ++V P R N T L+ ED G YTC V + G
Sbjct: 239 NPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQK 298
Query: 372 WSASLRFESP 381
S L S
Sbjct: 299 HSLKLTVVSA 308
Score = 96.5 bits (240), Expect = 2e-21
Identities = 42/272 (15%), Positives = 73/272 (26%), Gaps = 52/272 (19%)
Query: 183 LTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTF-WMLEGNRSLIYPGDRVDNIQ 241
L V P+++++P+++ V C IEG+ + W +G + ++
Sbjct: 1 LPVDKYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGK-----SYNWQEHNA 55
Query: 242 AEITSDGMNLLKIQNVSR------TAAPLIILCLGVNAAGSDLAR-ASLTVSGPDPNPPP 294
A +G L C AG +R S +
Sbjct: 56 ALRKDEGS--LVFLRPQASDEGHYQ-------CFAETPAGVASSRVISFRKTY-----LI 101
Query: 295 VILFGPANQTLPLRSEARLRCQV-RGEG--SVQWWRGEREV-------GSGPRVNVTGDG 344
+T +L C + + W + R+ DG
Sbjct: 102 ASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDG 161
Query: 345 SLVLTDVTKEDS---GEYTCVVKSPHGSA-SWSASLRFESPTNPNIGFFRAPEPSTYPGP 400
+L T VTKED +Y C K+ + T N G+ P P
Sbjct: 162 NLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQ--YVS 219
Query: 401 PTKPTLVNQT------ANGL---TLAWSRNNQ 423
+ +N +
Sbjct: 220 KDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGK 251
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein;
1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 231 bits (591), Expect = 3e-69
Identities = 78/289 (26%), Positives = 129/289 (44%), Gaps = 19/289 (6%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGT-NLAI 65
F ++P S +A G++ +C G + W K+ I + ++ LV+ T L +
Sbjct: 7 FFDLKPVSVDLALGESGTFKC-HVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTV 65
Query: 66 QDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDT-TVSASSIIVFECSVG 124
K D G+Y C NVAG ++S A L V P I+ + + V +EC +G
Sbjct: 66 LKVTKGDAGQYTCYASNVAG-KDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIG 124
Query: 125 GDAVLTVHWKRLGSAMPED---RMSVLPSR-SLQLSDVRLEDAGEYVCEAENAVGKISAS 180
G + V W + + + E RMS + S L++ ++ +ED+G+Y CEA NA G S+S
Sbjct: 125 GSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSS 184
Query: 181 ATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNI 240
+L V+ P+ R++P + G D C ++G+PP W + + G +
Sbjct: 185 TSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRE--LRSGKKY--- 239
Query: 241 QAEITSDGMNL-LKIQNVSRT-AAPLIILCLGVNAAGSDLARASLTVSG 287
+I S+ + I NV C N GS S+T+
Sbjct: 240 --KIMSENFLTSIHILNVDSADIG--EYQCKASNDVGSYTCVGSITLKA 284
Score = 219 bits (560), Expect = 5e-65
Identities = 70/295 (23%), Positives = 117/295 (39%), Gaps = 24/295 (8%)
Query: 97 LVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED----RMSVLPSRS 152
+ P+ P ++ F+C V G A + + W + + V + +
Sbjct: 3 MAPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTAT 62
Query: 153 LQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERPSDLRL-EVGRDAVFLCG 211
L + V DAG+Y C A N GK S SA L VQ P ++ R+ + + C
Sbjct: 63 LTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECK 122
Query: 212 IEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRT-AAPLIILCLG 270
I GSP W + I + + + +L++ N+S + C
Sbjct: 123 IGGSPEIKVLWYKDET--EIQESSKFRMSF----VESVAVLEMYNLSVEDSG--DYTCEA 174
Query: 271 VNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRGE--GSVQWWRG 328
NAAGS + SL V PPV P ++ L C+++G V W +
Sbjct: 175 HNAAGSASSSTSLKV-----KEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKD 229
Query: 329 EREVGSGPRVNVTGDG---SLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFES 380
+RE+ SG + + + S+ + +V D GEY C + GS + S+ ++
Sbjct: 230 KRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLKA 284
Score = 121 bits (305), Expect = 2e-30
Identities = 52/216 (24%), Positives = 83/216 (38%), Gaps = 24/216 (11%)
Query: 188 APIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSD 247
P +P + L +G F C + G+ P W + I PG +
Sbjct: 5 PPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNR--EIRPGGNYKMTL----VE 58
Query: 248 GMNLLKIQNVSRT-AAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPA-NQTL 305
L + V++ A C N AG D A L V PP + ++ +
Sbjct: 59 NTATLTVLKVTKGDAG--QYTCYASNVAGKDSCSAQLGV-----QEPPRFIKKLEPSRIV 111
Query: 306 PLRSEARLRCQVRG--EGSVQWWRGEREVGSGPRVNVT---GDGSLVLTDVTKEDSGEYT 360
R C++ G E V W++ E E+ + ++ L + +++ EDSG+YT
Sbjct: 112 KQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYT 171
Query: 361 CVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPST 396
C + GSAS S SL+ + P F + P P
Sbjct: 172 CEAHNAAGSASSSTSLKVKEPPV----FRKKPHPVE 203
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 230 bits (588), Expect = 2e-67
Identities = 89/404 (22%), Positives = 131/404 (32%), Gaps = 56/404 (13%)
Query: 8 FRVQP-KSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV--DGT--- 61
Q K V D L+EC +G+P P+ W +N + R+ + GT
Sbjct: 19 ITKQSAKDHIVDPRDNILIEC-EAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTLVI 77
Query: 62 NLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYII-RGPKDTTVSASSIIVFE 120
+ + +G YQC +N GT S L+V P V + + +
Sbjct: 78 DFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQ 137
Query: 121 CSV-GGDAVLTVHWKRLGSAMPED--RMSVLPSRSLQLSDVRLEDA-GEYVCEAENAVG- 175
C+ G + W R+S + L S+V L+D +Y C A
Sbjct: 138 CNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTH 197
Query: 176 --KISASATLTVQMAPIVRER----------PSDLRLEVGRDAVFLCGIEGSPPPSTFWM 223
+ TL V V ER S + G D + C G P P W
Sbjct: 198 TIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWY 257
Query: 224 LEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSR------TAAPLIILCLGVNAAGSD 277
+G L + +N + L+I NVS CL N GS
Sbjct: 258 KKG-GDLPSDKAKFEN------FNKA--LRITNVSEEDSGEYF-------CLASNKMGSI 301
Query: 278 LARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRGEG--SVQWWRGEREVGSG 335
S+ V P L P N L + RL C+ G +VQW + S
Sbjct: 302 RHTISVRV-----KAAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSA 356
Query: 336 P--RVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLR 377
P +++ D Y C + HG +A +
Sbjct: 357 PPNPNREVAGDTIIFRDTQISSRAVYQCNTSNEHGYLLANAFVS 400
Score = 223 bits (570), Expect = 6e-65
Identities = 65/300 (21%), Positives = 111/300 (37%), Gaps = 25/300 (8%)
Query: 1 ISLLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG 60
+S + V G L+C PP G P P + W + KR+
Sbjct: 112 VSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEP-ITQDKRVSQGHN 170
Query: 61 TNLAIQDSRKTDD-GRYQCVVKNVAG--TRESTDAVLRVLV-------KPYIIR---GPK 107
+L + D Y C + ++ L+VL P +
Sbjct: 171 GDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTAS 230
Query: 108 DTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPS-RSLQLSDVRLEDAGEY 166
V ++ EC G + W + G +P D+ ++L++++V ED+GEY
Sbjct: 231 SQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFENFNKALRITNVSEEDSGEY 290
Query: 167 VCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEG 226
C A N +G I + ++ V+ AP + P +L L G D +C G+P P+ WM+ G
Sbjct: 291 FCLASNKMGSIRHTISVRVKAAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNG 350
Query: 227 NRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRT-AAPLIILCLGVNAAGSDLARASLTV 285
P + + + ++ + A + C N G LA A ++V
Sbjct: 351 EPLQSAPPNPN-----REVAGDT--IIFRDTQISSRA--VYQCNTSNEHGYLLANAFVSV 401
Score = 166 bits (423), Expect = 5e-45
Identities = 68/329 (20%), Positives = 111/329 (33%), Gaps = 34/329 (10%)
Query: 92 AVLRVLVKPYIIRGP-KDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMP---EDRMSV 147
+ P I + KD V I+ EC G+ + HW R + R+S+
Sbjct: 9 IQNELTQPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSM 68
Query: 148 LPSR-----SLQLSDVRLEDAGEYVCEAENAVGKI-SASATLTVQMAP-IVRERPSDLRL 200
+ E GEY C A N G S L V +P +E + +
Sbjct: 69 RRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVV 128
Query: 201 EVGRDAVFLCGI-EGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSR 259
+ G C G P P FWM I RV +G L NV
Sbjct: 129 QEGAPLTLQCNPPPGLPSPVIFWMSSSME-PITQDKRV-----SQGHNGD--LYFSNVML 180
Query: 260 TAAPLIILCLGVNAAGSDL---ARASLTV--SGPDPNPPPVILF---GPANQTLPLRSEA 311
C + +L V + P ++ ++Q + +
Sbjct: 181 QDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDL 240
Query: 312 RLRCQVRG--EGSVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGS 369
L C G + W++ ++ S + +L +T+V++EDSGEY C+ + GS
Sbjct: 241 LLECIASGVPTPDIAWYKKGGDLPSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMGS 300
Query: 370 ASWSASLRFESPTNPNIGFFRAPEPSTYP 398
+ S+R ++ P + P+
Sbjct: 301 IRHTISVRVKAA--PY--WLDEPKNLILA 325
Score = 154 bits (391), Expect = 8e-41
Identities = 45/178 (25%), Positives = 69/178 (38%), Gaps = 7/178 (3%)
Query: 12 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKT 71
SQ V G LLEC G P P + W K G + + K L I + +
Sbjct: 229 ASSQMVLRGMDLLLEC-IASGVPTPDIAWYKKGGDL--PSDKAKFENFNKALRITNVSEE 285
Query: 72 DDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTV 131
D G Y C+ N G+ T +RV PY + PK+ ++ C G+ TV
Sbjct: 286 DSGEYFCLASNKMGSIRHT-ISVRVKAAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTV 344
Query: 132 HWKRLG---SAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQ 186
W G + P + + ++ D ++ Y C N G + A+A ++V
Sbjct: 345 QWMVNGEPLQSAPPNPNREVAGDTIIFRDTQISSRAVYQCNTSNEHGYLLANAFVSVL 402
Score = 104 bits (260), Expect = 8e-24
Identities = 43/267 (16%), Positives = 78/267 (29%), Gaps = 30/267 (11%)
Query: 177 ISASATLTVQMAP-IVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGD 235
+ S + P I ++ D ++ + + C +G+P PS W I
Sbjct: 5 MDPSIQNELTQPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDP 64
Query: 236 RVDNIQAEITSDGMNLLKIQNVSRTAAPLII---LCLGVNAAGSDLAR-ASLTVSGPDPN 291
RV + G L I S C N G+ L+ L VS
Sbjct: 65 RV----SMRRRSG--TLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKS--- 115
Query: 292 PPPVILFGPANQTLPLRSEARLRCQV-RGEG--SVQWWR-GEREVGSGPRVNVTGDGSLV 347
P + + L+C G + W + RV+ +G L
Sbjct: 116 -PLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGDLY 174
Query: 348 LTDVTKEDS-GEYTCVVKSPHG-SASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPT 405
++V +D +Y+C + + + T + ++
Sbjct: 175 FSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMV 234
Query: 406 LVNQT------ANGL---TLAWSRNNQ 423
L A+G+ +AW +
Sbjct: 235 LRGMDLLLECIASGVPTPDIAWYKKGG 261
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 229 bits (585), Expect = 3e-67
Identities = 92/399 (23%), Positives = 147/399 (36%), Gaps = 47/399 (11%)
Query: 8 FRVQPKSQ-RVAAGDTALLECGPPRGHPEPTLVW-KKNGHPIDFENSKRLRLVDGT---- 61
F +P ++ + A +EC G+P P ++W + +G + R DG
Sbjct: 6 FLKEPTNRIDFSNSTGAEIEC-KASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFP 64
Query: 62 NLAIQDSRK-TDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFE 120
+D R+ Y C+ +N G+ S D +R +V Y V + V +
Sbjct: 65 PFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIK 124
Query: 121 CSVG---GDAVLTVHWKR------LGSAMPEDRMSVLPSRSLQLSDVRLEDA-GEYVCEA 170
C + D V V W A + + VLPS L + +V ED Y C
Sbjct: 125 CLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRT 184
Query: 171 ENAVG---KISASATLTVQMAPIVRERP-------SDLRLEVGRDAVFLCGIEGSPPPST 220
++ + ++SA+ V PI P L L V LC +G P PS
Sbjct: 185 KHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSF 244
Query: 221 FWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLAR 280
W + +++ +++ L I++ + LC+ N+ G +
Sbjct: 245 RWYKFIEGTTRKQAVVLNDRVKQVSG----TLIIKDAVVEDSG-KYLCVVNNSVGGESVE 299
Query: 281 ASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRGEG--SVQWWRGEREVGSGPRV 338
LTV P P QT+ A CQ G +V W + + +G
Sbjct: 300 TVLTV-----TAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGH---- 350
Query: 339 NVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLR 377
+ L + V KED G Y C V++ SA SA L+
Sbjct: 351 ---SESVLRIESVKKEDKGMYQCFVRNDRESAEASAELK 386
Score = 202 bits (516), Expect = 1e-57
Identities = 67/302 (22%), Positives = 110/302 (36%), Gaps = 40/302 (13%)
Query: 6 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLV--WKKNGHPIDF---ENSKRLRLVDG 60
+ + + V G++A+++C P + V W + F E + ++
Sbjct: 104 QYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPS 163
Query: 61 TNLAIQDSRKTDD-GRYQCVVKNVAG--TRESTDAVLRVLVKPYIIRGP-------KDTT 110
L I++ D YQC K+ TR S V+ +P P K
Sbjct: 164 GELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLE 223
Query: 111 VSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSR------SLQLSDVRLEDAG 164
+ + I C G + W + + VL R +L + D +ED+G
Sbjct: 224 LMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSG 283
Query: 165 EYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWML 224
+Y+C N+VG S LTV + P ++ GR AVF C G+P + WM
Sbjct: 284 KYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMK 343
Query: 225 EGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRT-AAPLIILCLGVNAAGSDLARASL 283
+G I + V L+I++V + + C N S A A L
Sbjct: 344 DG--KAIGHSESV--------------LRIESVKKEDKG--MYQCFVRNDRESAEASAEL 385
Query: 284 TV 285
+
Sbjct: 386 KL 387
Score = 154 bits (390), Expect = 7e-41
Identities = 58/308 (18%), Positives = 90/308 (29%), Gaps = 30/308 (9%)
Query: 100 PYIIRGPKDT-TVSASSIIVFECSVGGDAVLTVHWKRLG---SAMPEDRMSVLPSRSLQL 155
P ++ P + S S+ EC G+ + + W R + L
Sbjct: 4 PVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVF 63
Query: 156 SDVRLED------AGEYVCEAENAVGKI-SASATLTVQMAPIVRERPSDLRLEVGRDAVF 208
R ED A Y C A N G I S + +A + + G AV
Sbjct: 64 PPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVI 123
Query: 209 LCGIE---GSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLI 265
C I W + + + + + G L I+ V
Sbjct: 124 KCLIPSFVADFVEVVSWHTDEEENYF--PGAEYDGKYLVLPSGE--LHIREVGPEDGYKS 179
Query: 266 ILCLGVNAAGSDL---ARASLTVSGPDPN--PPPVILFGPANQTLPLRSEARLRCQVRG- 319
C + + A V + P L + L C +G
Sbjct: 180 YQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGF 239
Query: 320 -EGSVQWWRGEREVGSGPRV-----NVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWS 373
S +W++ V G+L++ D EDSG+Y CVV + G S
Sbjct: 240 PAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVE 299
Query: 374 ASLRFESP 381
L +P
Sbjct: 300 TVLTVTAP 307
Score = 85.8 bits (212), Expect = 8e-18
Identities = 47/286 (16%), Positives = 83/286 (29%), Gaps = 44/286 (15%)
Query: 186 QMAP-IVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEI 244
Q P ++E + + A C G+P P W+ ++ +I
Sbjct: 1 QKGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLR-----QI 55
Query: 245 TSDGMNLLKIQNVSRTAAPLIIL-----CLGVNAAGSDLAR-ASLTVSGPDPNPPPVILF 298
+SDG L + CL N GS ++R +
Sbjct: 56 SSDGK--LVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVA-----QYYEA 108
Query: 299 GPANQTLPLRSEARLRCQVRG-----EGSVQWWRGEREVG-----SGPRVNVTGDGSLVL 348
+ + + A ++C + V W E E + V G L +
Sbjct: 109 DVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHI 168
Query: 349 TDVTKEDS-GEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLV 407
+V ED Y C K + ++ + I P+ P +V
Sbjct: 169 REVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKP--LELMV 226
Query: 408 NQT------ANGL---TLAWSRNNQ---IGSSSLLGYQVEMYSRPL 441
T A G + W + + + +L +V+ S L
Sbjct: 227 AHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTL 272
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 239 bits (611), Expect = 3e-67
Identities = 72/438 (16%), Positives = 130/438 (29%), Gaps = 67/438 (15%)
Query: 6 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAI 65
G+ + G+P P + W KNG P++ + G L I
Sbjct: 331 AFGSGMESLVEATVGERVRIPA-KYLGYPPPEIKWYKNGIPLE----SNHTIKAGHVLTI 385
Query: 66 QDSRKTDDGRYQCVVKNVAGT-RESTDAVLRVLVKPYIIRGPKDT---TVSASSIIVFEC 121
+ + D G Y ++ N ++S L V V P I + + + C
Sbjct: 386 MEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTC 445
Query: 122 SV-GGDAVLTVHWKRLGSAMPEDRMSVLPSRS---------------------------- 152
+V +HW + S S +
Sbjct: 446 TVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFA 505
Query: 153 ---------LQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVG 203
L + Y CEA N VG+ + V P + +P D++
Sbjct: 506 LIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVISFHVTRGPEITLQP-DMQPTEQ 564
Query: 204 RDAVFLCGIEGSPPPSTFWMLEGNRSL--------------IYPGDRVDNIQAEITSDGM 249
C + S + W G + L + +++ +++ +
Sbjct: 565 ESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDI 624
Query: 250 NLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRS 309
+++++N S +CL + ++ P I NQT +
Sbjct: 625 LIMELKNASLQDQ-GDYVCLAQDRKTKKRHCVVRQLTVL-ERVAPTITGNLENQTTSIGE 682
Query: 310 EARLRCQVRG--EGSVQWWRGEREVGSGPRVNVT-GDGSLVLTDVTKEDSGEYTCVVKSP 366
+ C G + W++ + + + G+ +L + V KED G YTC S
Sbjct: 683 SIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSV 742
Query: 367 HGSASWSASLRFESPTNP 384
G A A E
Sbjct: 743 LGCAKVEAFFIIEGAQEK 760
Score = 221 bits (565), Expect = 5e-61
Identities = 74/522 (14%), Positives = 148/522 (28%), Gaps = 44/522 (8%)
Query: 1 ISLLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG 60
+SL +Q + A T + C RG + +W N + + + DG
Sbjct: 27 VSLDLPRLSIQKDILTIKANTTLQITC---RGQRDLDWLWPNNQSGSE-QRVEVTECSDG 82
Query: 61 TN---LAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIR-----GPKDTTVS 112
L I D G Y+C + ++ P+I G T +
Sbjct: 83 LFCKTLTIPKVIGNDTGAYKCFYRETDLA-SVIYVYVQDYRSPFIASVSDQHGVVYITEN 141
Query: 113 ASSIIVFECSV-GGDAVLTVHWKRLGSAMPED--RMSVLPSRSLQLSDVRLEDAGEYVCE 169
+ +V C + +++ + D R+S + + + AG CE
Sbjct: 142 KNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCE 201
Query: 170 AENAVGKISASATLTVQMA----PIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLE 225
A+ + + V + +V + L VG V C + E
Sbjct: 202 AKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWE 261
Query: 226 GNRSLIYPGDRVDNIQAEITSDGMNL----LKIQNVSRTAAPLIILCLGVNAAGSDLARA 281
S V+ + M L I V+R+ L C + +
Sbjct: 262 YPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYT-CAASSGLMTKKNST 320
Query: 282 SLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG--EGSVQWWRGEREVGSGPRVN 339
+ V + + R+ + G ++W++ + S
Sbjct: 321 FVRVHEKPF--VAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLES--NHT 376
Query: 340 VTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPG 399
+ L + +V++ D+G YT ++ +P S + P IG P
Sbjct: 377 IKAGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVD-SY 435
Query: 400 PPTKPTLVNQTANG----LTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATA-- 453
+ T + W + ++ V + + S +
Sbjct: 436 QYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGN 495
Query: 454 ------TWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHG 489
+ + T+ ++ + A+N G
Sbjct: 496 KIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVG 537
Score = 197 bits (501), Expect = 1e-52
Identities = 72/551 (13%), Positives = 138/551 (25%), Gaps = 95/551 (17%)
Query: 5 REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLA 64
+ T ++ C + +L + + R+
Sbjct: 128 SVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRF-VPDGNRISWDSKKGFT 186
Query: 65 IQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVL---VKPYIIRGPKDTTVSASSIIVFEC 121
I + G C K + +S ++ V+ + ++ +S +V C
Sbjct: 187 IPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNC 246
Query: 122 SVGGDAVLTVHWKRLGSAMPEDRMSVLPSR--------------SLQLSDVRLEDAGEYV 167
+ + + + + + ++ +L + V D G Y
Sbjct: 247 TARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYT 306
Query: 168 CEAENAVGKISASATLTVQMAPIVR---ERPSDLRLEVGRDAVFLCGIEGSPPPSTFWML 224
C A + + S + V P V S + VG G PPP W
Sbjct: 307 CAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYK 366
Query: 225 EGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRT-AAPLIILCLGVNAAGSDLARASL 283
G +++ T ++L I VS + N + +
Sbjct: 367 NGIP-----------LESNHTIKAGHVLTIMEVSERDTG--NYTVILTNPISKEKQSHVV 413
Query: 284 TVSGPDPNPPPVIL---FGPANQTLPLRSEARLRCQVRGE---GSVQW-WRGEREVGSGP 336
++ PP I + + L C V + W W+ E E + P
Sbjct: 414 SL---VVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEP 470
Query: 337 RVNVTGDGS-----------------------------------LVLTDVTKEDSGEYTC 361
V+ L S Y C
Sbjct: 471 SQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKC 530
Query: 362 VVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGL---TLAW 418
+ G S P+ + + TA+ L W
Sbjct: 531 EAVNKVGRGERVISFHVTRGPE----ITLQPDMQPTEQ---ESVSLWCTADRSTFENLTW 583
Query: 419 SRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVGLTY 478
+ L V P+ + + AT +TN I+ + N ++
Sbjct: 584 YKLG----PQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDIL-IMELKNASLQDQG 638
Query: 479 TFLVRALNSHG 489
++ A +
Sbjct: 639 DYVCLAQDRKT 649
Score = 188 bits (479), Expect = 6e-50
Identities = 62/457 (13%), Positives = 122/457 (26%), Gaps = 82/457 (17%)
Query: 12 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSK----RLRLVDGTN----- 62
++ G+ +L C R + + ++ K L+ G+
Sbjct: 231 SHGIELSVGEKLVLNC-TARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFL 289
Query: 63 --LAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPK---DTTVSASSII 117
L I ++D G Y C + T++++ +RV KP++ G + +
Sbjct: 290 STLTIDGVTRSDQGLYTCAASSGLMTKKNS-TFVRVHEKPFVAFGSGMESLVEATVGERV 348
Query: 118 VFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGK- 176
G + W + G + + ++ L + +V D G Y N + K
Sbjct: 349 RIPAKYLGYPPPEIKWYKNGIPLESNH-TIKAGHVLTIMEVSERDTGNYTVILTNPISKE 407
Query: 177 -ISASATLTVQMAPIVRERPSD---LRLEVGRDAVFLCGIEGSPPPSTF-WMLEGNRSLI 231
S +L V + P + E+ + G C + PPP W +
Sbjct: 408 KQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECA 467
Query: 232 YPGDRV---------------------------DNIQAEITSDGMNLLKIQNVSRTAAPL 264
+ N A I + + + +
Sbjct: 468 NEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVS-A 526
Query: 265 IILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRGE--GS 322
+ C VN G S V P I P + + L C +
Sbjct: 527 LYKCEAVNKVGRGERVISFHV-----TRGPEITLQP-DMQPTEQESVSLWCTADRSTFEN 580
Query: 323 VQWWRGEREVGSGPRVNVT-----------------------GDGSLVLTDVTKEDSGEY 359
+ W++ + + + L + + +D G+Y
Sbjct: 581 LTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDY 640
Query: 360 TCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPST 396
C+ + + E T
Sbjct: 641 VCLAQDRKTKKRHCVVRQLTVLERVAPTITGNLENQT 677
Score = 172 bits (436), Expect = 2e-44
Identities = 54/357 (15%), Positives = 100/357 (28%), Gaps = 42/357 (11%)
Query: 65 IQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVG 124
+Q + CV A + + L P + T+ A++ + C
Sbjct: 1 MQSKVLLAVALWLCVETRAASVGLPSVS----LDLPRLSIQKDILTIKANTTLQITCR-- 54
Query: 125 GDAVLTVHWKRLGSAMPED-RMSVLPS----RSLQLSDVRLEDAGEYVCEAENAVGKISA 179
G L W S + ++ ++L + V D G Y C
Sbjct: 55 GQRDLDWLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLASVI 114
Query: 180 SATLTVQMAPIV-----RERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPG 234
+ +P + + + + V C S + + + G
Sbjct: 115 YVYVQDYRSPFIASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDG 174
Query: 235 DRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPP 294
+R I+ D I + + A ++ C S + + V
Sbjct: 175 NR-------ISWDSKKGFTIPSYMISYAGMVF-CEAKINDESYQSIMYIVVVVG-YRIYD 225
Query: 295 VILFGPANQTLPLRSEARLRCQVRGEGS--VQW-WRGEREVGSGPRVN------------ 339
V+L L + + L C R E + + + W ++
Sbjct: 226 VVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEM 285
Query: 340 VTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPST 396
+L + VT+ D G YTC S + S +R P + F E
Sbjct: 286 KKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEK--PFVAFGSGMESLV 340
Score = 147 bits (373), Expect = 1e-36
Identities = 56/353 (15%), Positives = 92/353 (26%), Gaps = 76/353 (21%)
Query: 6 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLV-WKKNGHPID---------------- 48
E + G T L C P P + W
Sbjct: 424 GEKSLISPVDSYQYGTTQTLTC-TVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPC 482
Query: 49 ---------------FENSKRLRLVDGTN---LAIQDSRKTDDGRYQCVVKNVAGTREST 90
N + L++G N + Y+C N G E
Sbjct: 483 EEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGERV 542
Query: 91 DAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLP- 149
V P I P D + + C+ + W +LG + LP
Sbjct: 543 -ISFHVTRGPEITLQP-DMQPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPT 600
Query: 150 -----------------------SRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTV- 185
++L + L+D G+YVC A++ K +
Sbjct: 601 PVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLT 660
Query: 186 ---QMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQA 242
++AP + + +G C G+PPP W + + +
Sbjct: 661 VLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNET--LVEDSGI----- 713
Query: 243 EITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPV 295
+ DG L I+ V + L C + G A + G +
Sbjct: 714 -VLKDGNRNLTIRRVRKEDEGLYT-CQACSVLGCAKVEAFFIIEGA-QEKTNL 763
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM;
2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
PDB: 1ie5_A
Length = 291
Score = 225 bits (576), Expect = 4e-67
Identities = 61/291 (20%), Positives = 102/291 (35%), Gaps = 18/291 (6%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV----DGTN 62
+ + P ++ G++ C + + W N +R+ +V D +
Sbjct: 4 QVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSST 63
Query: 63 LAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECS 122
L I ++ D G Y+CVV GT+ +++ K P V C
Sbjct: 64 LTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCD 123
Query: 123 VGGDAVLTVHWKRLGSAMP---EDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGK--I 177
V T+ WK G + + R VL + LQ+ ++ D G Y CE
Sbjct: 124 VVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEIN 183
Query: 178 SASATLTVQMAP--IVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGD 235
+ V + P R+ + +G+ +C +G P P+ W +G I +
Sbjct: 184 FKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEP--IENEE 241
Query: 236 RVDNIQAEITSDGMNLLKIQNVSRT-AAPLIILCLGVNAAGSDLARASLTV 285
D L I+NV + A + C+ N AG A L V
Sbjct: 242 EDDEKHIFSDDSSE--LTIRNVDKNDEAEYV--CIAENKAGEQDASIHLKV 288
Score = 183 bits (465), Expect = 6e-52
Identities = 61/293 (20%), Positives = 104/293 (35%), Gaps = 25/293 (8%)
Query: 100 PYIIRGPKDTTVSASSIIVFECSVGGDA-VLTVHWKRLGSAMPED---RMSVL----PSR 151
+ P +S F C V GDA + W R+SV+ S
Sbjct: 3 LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 62
Query: 152 SLQLSDVRLEDAGEYVCEAENAVGKI-SASATLTVQMAPIVRERPSDLRLEVGRDAVFLC 210
+L + + ++DAG Y C G A+ + + + + P+ + G DAV +C
Sbjct: 63 TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVC 122
Query: 211 GIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLG 270
+ S PP+ W +G ++ R + S+ L+I+ + +T C G
Sbjct: 123 DVVSSLPPTIIWKHKGRDVILKKDVRF-----IVLSNNY--LQIRGIKKTDEG-TYRCEG 174
Query: 271 VNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG--EGSVQWWRG 328
A ++ + V P P N T L L C G E ++ W +
Sbjct: 175 RILARGEINFKDIQVIVNVP-PTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKD 233
Query: 329 EREVGSGP-----RVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASL 376
+ + + L + +V K D EY C+ ++ G S L
Sbjct: 234 GEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHL 286
Score = 163 bits (414), Expect = 5e-45
Identities = 47/189 (24%), Positives = 78/189 (41%), Gaps = 10/189 (5%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQD 67
F+ P Q G+ A++ C PT++WK G + + R ++ L I+
Sbjct: 103 FKNAPTPQEFKEGEDAVIVC-DVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRG 161
Query: 68 SRKTDDGRYQCVVKNVAGTREST-DAVLRVLVKPYII--RGPKDTTVSASSIIVFECSVG 124
+KTD+G Y+C + +A + D + V V P + + + T + + C
Sbjct: 162 IKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDAD 221
Query: 125 GDAVLTVHWKRLGSAMPED------RMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKIS 178
G T+ W + G + + + S L + +V D EYVC AEN G+
Sbjct: 222 GFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQD 281
Query: 179 ASATLTVQM 187
AS L V
Sbjct: 282 ASIHLKVFA 290
Score = 108 bits (271), Expect = 4e-26
Identities = 40/214 (18%), Positives = 65/214 (30%), Gaps = 15/214 (7%)
Query: 189 PIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTF-WMLEGNRSLIYPGDRVDNIQAEITSD 247
V PS + VG FLC + G W L R I D
Sbjct: 3 LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQR---ISVVWNDD 59
Query: 248 GMNLLKIQNVSRTAAPLIILCLGVNAAGSDL-ARASLTVSGPDPNPPPVILFGPANQTLP 306
+ L I N + A I C+ G+ A ++ + + P Q
Sbjct: 60 DSSTLTIYNANIDDAG-IYKCVVTAEDGTQSEATVNVKI-----FQKLMFKNAPTPQEFK 113
Query: 307 LRSEARLRCQVRG--EGSVQWWRGEREV--GSGPRVNVTGDGSLVLTDVTKEDSGEYTCV 362
+A + C V ++ W R+V R V + L + + K D G Y C
Sbjct: 114 EGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCE 173
Query: 363 VKSPHGSASWSASLRFESPTNPNIGFFRAPEPST 396
+ ++ P + ++ +T
Sbjct: 174 GRILARGEINFKDIQVIVNVPPTVQARQSIVNAT 207
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, CY receptor complex, extracellular
complex; HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 228 bits (581), Expect = 3e-66
Identities = 47/384 (12%), Positives = 102/384 (26%), Gaps = 25/384 (6%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQ 66
+ + V + L+ + +W ++ + L+ ++ I
Sbjct: 50 GTVYEAAAVEVDVSASITLQV-LVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVIL 108
Query: 67 DSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGD 126
+T G Y +++ A + + + C
Sbjct: 109 KMTETQAGEYLLFIQSEATNYTIL-FTVSIRNTLLYTLRRPYFRKMENQ-DALVCISESV 166
Query: 127 AVLTVHWKRLGS---AMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATL 183
V W S + E+ +V+ L ++ + C A N +G+ +
Sbjct: 167 PEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHEL---FGTDIRCCARNELGREC-TRLF 222
Query: 184 TVQMAPIVRERPSDLRLEVGRDAVFLCG-IEGSPPPSTFWMLEGNRSLIYPGDRVDNIQA 242
T+ + + L L+VG C + + W LE +
Sbjct: 223 TIDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYST 282
Query: 243 EITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPAN 302
T + + +V+R C A +T+ I ++
Sbjct: 283 NRTMIRILFAFVSSVARNDTGYYT-CSSSKHPSQS---ALVTIVE-----KGFINATNSS 333
Query: 303 QTLPLRSEARLRCQVRGEGS----VQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGE 358
+ + VR + W + + + S+ K GE
Sbjct: 334 EDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKG-LDNGYSISKFCNHKHQPGE 392
Query: 359 YTCVVKSPHGSASWSASLRFESPT 382
Y ++ + +L S T
Sbjct: 393 YIFHAENDDAQFTKMFTLNIRSGT 416
Score = 179 bits (454), Expect = 6e-49
Identities = 49/381 (12%), Positives = 100/381 (26%), Gaps = 48/381 (12%)
Query: 61 TNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFE 120
N DS Y V ++ LR + V S+ I +
Sbjct: 15 INHKNNDSSVGKSSSYPMVSESPEDL----GCALRPQS-SGTVYEAAAVEVDVSASITLQ 69
Query: 121 CSVGGDAVLTVHWKRLGSAMPED---RMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKI 177
V ++ W S++ + S+ + + AGEY+ ++
Sbjct: 70 VLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNY 129
Query: 178 SASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRV 237
+ T++++ + R R +D +C E P P W+L ++ +
Sbjct: 130 TILFTVSIRNTLLYTLRRPYFRKMENQD-ALVCISESVPEPIVEWVLCDSQGESCKEESP 188
Query: 238 DNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVIL 297
+ + + T I C N G + R
Sbjct: 189 -----AVVKKEE--KVLHELFGT----DIRCCARNELGRECTRLFTIDL------NQTPQ 231
Query: 298 FGPANQTLPLRSEARLRCQVRG---EGSVQWWRGEREVGSGPRVNVTG---------DGS 345
L + +RC+ + W + + G ++
Sbjct: 232 TTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILF 291
Query: 346 LVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPT 405
++ V + D+G YTC SA + Y +
Sbjct: 292 AFVSSVARNDTGYYTCSSSKHPSQ---SALVTIVEKGF----INATNSSEDYEIDQYEEF 344
Query: 406 LVNQTANG---LTLAWSRNNQ 423
+ + W+ + +
Sbjct: 345 CFSVRFKAYPQIRCTWTFSRK 365
Score = 155 bits (394), Expect = 4e-41
Identities = 25/195 (12%), Positives = 53/195 (27%), Gaps = 13/195 (6%)
Query: 4 LREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN- 62
L + + + G+ + C + L W+ ++ N +
Sbjct: 226 LNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRT 285
Query: 63 ------LAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVS--AS 114
+ + D G Y C A++ ++ K +I
Sbjct: 286 MIRILFAFVSSVARNDTGYYTCSSSKHPSQ----SALVTIVEKGFINATNSSEDYEIDQY 341
Query: 115 SIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAV 174
F + W + P ++ + S+ GEY+ AEN
Sbjct: 342 EEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDD 401
Query: 175 GKISASATLTVQMAP 189
+ + TL ++
Sbjct: 402 AQFTKMFTLNIRSGT 416
Score = 96.3 bits (239), Expect = 5e-21
Identities = 37/293 (12%), Positives = 79/293 (26%), Gaps = 52/293 (17%)
Query: 157 DVRLEDAGEYVC----EAENAVGKISASA-------------TLTVQMAPIVRERPSDLR 199
+ +D C N +S+ L Q + V E + +
Sbjct: 1 ETGNQDLPVIKCVLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYE-AAAVE 59
Query: 200 LEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSR 259
++V ++ S W+ + + P + N G+ + I ++
Sbjct: 60 VDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQN-------RGVVSMVILKMTE 112
Query: 260 TAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG 319
T A L + A + ++++ + + ++ L C
Sbjct: 113 TQAG-EYLLFIQSEATNYTILFTVSIRN-----TLLYTLRRPYFR-KMENQDALVCISES 165
Query: 320 EG--SVQWWR--GEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSAS 375
V+W + E V VL ++ D C ++ G
Sbjct: 166 VPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHELFGTD---IRCCARNELGRECTRLF 222
Query: 376 LRFESPTNPNIGFFRAPEPSTY--PGPPTKPTLVNQTANG---LTLAWSRNNQ 423
+ T + P + G P + + + L W N+
Sbjct: 223 TIDLNQT------PQTTLPQLFLKVGEPL--WIRCKAVHVNHGFGLTWELENK 267
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 228 bits (583), Expect = 2e-65
Identities = 63/417 (15%), Positives = 118/417 (28%), Gaps = 51/417 (12%)
Query: 6 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAI 65
+ + +S + L+ C P PE T K R + I
Sbjct: 115 AKLFLVDRSLYGKEDNDTLVRC--PLTDPEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMI 172
Query: 66 QDSRKTDD-GRYQCVVKNVAGTRESTDAVLRVLVK----PYIIRGPKDTTVSASSIIVFE 120
+ ++ C V + S +L+V P + +
Sbjct: 173 KSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVT 232
Query: 121 CSV-GGDAVLTVHWKRLGSAMPED---------RMSVLPSRSLQLSDVRLEDAGEYVCEA 170
C++ + + WKR S + +L +S R+ D+G ++C A
Sbjct: 233 CTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYA 292
Query: 171 ENAVGKISASATLTVQMAPIVRERP---SDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGN 227
N G + + TL V + P + + + G + + E P P + N
Sbjct: 293 NNTFGSANVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMN 352
Query: 228 RSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRT-AAPLIILCLGVNAAGSDLARASLTVS 286
R+ + + E ++ L + + T L N+ + ++ V
Sbjct: 353 RTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGG--TYTFLVSNSDVNAAIAFNVYV- 409
Query: 287 GPDPNPPPVILFGPANQTLPLRSEARLRCQVRGEG--SVQW-WRGEREVGSGPRV----- 338
N P IL T L+C G ++ W + E V
Sbjct: 410 ----NTKPEIL------TYDRLVNGMLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDV 459
Query: 339 ---------NVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNI 386
+ + +G C + G S + F+ I
Sbjct: 460 QTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNFAFKGNNKEQI 516
Score = 185 bits (470), Expect = 3e-50
Identities = 58/402 (14%), Positives = 98/402 (24%), Gaps = 56/402 (13%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQD 67
V GD L C + W EN +
Sbjct: 39 IHPGKSDLIVRVGDEIRLLC-----TDPGFVKWTFEILDETNENK-------QNEWITEK 86
Query: 68 SRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDA 127
+ T+ G+Y C K+ + V + + + + C +
Sbjct: 87 AEATNTGKYTCTNKHGLSNS----IYVFVRDPAKLFLVDRSLYGKEDNDTLVRCPLTDPE 142
Query: 128 VLTVHWKRL-GSAMPED-RMSVLPSRSLQLSDV-RLEDAGEYVCEAENAVG-KISASATL 183
V K G +P+D R P + + V R C + +S L
Sbjct: 143 VTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFIL 202
Query: 184 TV----QMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDN 239
V + P+V + L G + C I+ N
Sbjct: 203 KVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSW 262
Query: 240 IQAEITSDGMNLLKIQNVSR------TAAPLIILCLGVNAAGSDLARASLTVSGPDPNPP 293
+ + L I + C N GS +L V
Sbjct: 263 HHGDFNYERQATLTISSARVNDSGVFM-------CYANNTFGSANVTTTLEV-----VDK 310
Query: 294 PVILFGP---ANQTLPLRSEARLRCQVRGE---GSVQWWRGEREVGSGP--------RVN 339
I P + L + QW R N
Sbjct: 311 GFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESN 370
Query: 340 VTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESP 381
+ L LT + + G YT +V + +A+ + ++ +
Sbjct: 371 IRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTK 412
Score = 167 bits (425), Expect = 2e-44
Identities = 53/326 (16%), Positives = 96/326 (29%), Gaps = 37/326 (11%)
Query: 72 DDGRYQCVV----KNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDA 127
+ CV+ + G+ + + P I G D V I C+ G
Sbjct: 6 GAWDFLCVLLLLLRVQTGSSQPS-VSPGEPSPPSIHPGKSDLIVRVGDEIRLLCTDPG-- 62
Query: 128 VLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQM 187
V W D + + G+Y C ++ + S + V+
Sbjct: 63 --FVKWTF----EILDETNENKQNEWITEKAEATNTGKYTCTNKHGLS---NSIYVFVRD 113
Query: 188 APIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSD 247
+ L + D + C + P + + + + R D
Sbjct: 114 PAKLFLVDRSLYGKEDNDTLVRCPL-TDPEVTNYSLKGCQGKPLPKDLR-------FIPD 165
Query: 248 GMNLLKIQNVSRTAAPLIILCLGVNAAGSDL-ARASLTVSGPDPNPPPVILFGPANQTLP 306
+ I++V R L + C S L + L V P PV+ A+ L
Sbjct: 166 PKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVR-PAFKAVPVVSVSKASYLLR 224
Query: 307 LRSEARLRCQVRG---EGSVQWWRGEREVGSGPRVNVT--------GDGSLVLTDVTKED 355
E + C ++ W R + + N +L ++ D
Sbjct: 225 EGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVND 284
Query: 356 SGEYTCVVKSPHGSASWSASLRFESP 381
SG + C + GSA+ + +L
Sbjct: 285 SGVFMCYANNTFGSANVTTTLEVVDK 310
Score = 125 bits (316), Expect = 2e-30
Identities = 36/213 (16%), Positives = 59/213 (27%), Gaps = 31/213 (14%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLV-WKKNGHPIDFENSKRLRLVDGTN---- 62
F + + V G+ L P+P W + + + +N
Sbjct: 316 FPMINTTVFVNDGENVDLIV-EYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYV 374
Query: 63 --LAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFE 120
L + + T+ G Y +V N + V KP I+ + + +
Sbjct: 375 SELHLTRLKGTEGGTYTFLVSNSDVNAAIA-FNVYVNTKPEILTYDRLVNG------MLQ 427
Query: 121 CSVGGDAVLTVHWKRLGSAMPEDRMSVLPSR----------------SLQLSDVRLEDAG 164
C G T+ W SVLP + + G
Sbjct: 428 CVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNG 487
Query: 165 EYVCEAENAVGKISASATLTVQMAPIVRERPSD 197
C+A N VGK SA + + P
Sbjct: 488 TVECKAYNDVGKTSAYFNFAFKGNNKEQIHPHH 520
Score = 91.7 bits (227), Expect = 2e-19
Identities = 36/278 (12%), Positives = 68/278 (24%), Gaps = 42/278 (15%)
Query: 159 RLEDAGEYVCE----AENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEG 214
A +++C G S + P + SDL + VG + LC
Sbjct: 3 GARGAWDFLCVLLLLLRVQTGSSQPSVSPGEPSPPSIHPGKSDLIVRVGDEIRLLC--TD 60
Query: 215 SPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRT-AAPLIILCLGVNA 273
W E E + N + T C +
Sbjct: 61 PGFVK--WTFEILD--------------ETNENKQNEWITEKAEATNTG--KYTCTNKHG 102
Query: 274 AGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG-EGSVQWWRGE--R 330
+ + V P + + ++ +RC + E + +G +
Sbjct: 103 LSN---SIYVFVRD-----PAKLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGK 154
Query: 331 EVGSGPRVNVTGDGSLVLTDVTK-EDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFF 389
+ R +++ V + C V S S +
Sbjct: 155 PLPKDLRFIPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKSVL-SEKFILKVRPAFKAVPV 213
Query: 390 RAPEPSTYPGPPTKPTLVNQTANG----LTLAWSRNNQ 423
+ ++Y + V T + W R N
Sbjct: 214 VSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENS 251
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo
sapiens}
Length = 291
Score = 219 bits (560), Expect = 6e-65
Identities = 57/297 (19%), Positives = 99/297 (33%), Gaps = 32/297 (10%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN--LA 64
+ + ++ G++ C G PE + G I + + +G L
Sbjct: 6 QVTISLSKVELSVGESKFFTC-TAIGEPESIDWYNPQGEKII-STQRVVVQKEGVRSRLT 63
Query: 65 IQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVG 124
I ++ D G Y+C + G + VL + K C V
Sbjct: 64 IYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVS 123
Query: 125 GDAVLTVHWKRLG---SAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAEN-AVGKISAS 180
V W + + ++R ++L + +LQ+ ++ D G Y CE A G+I
Sbjct: 124 SSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFR 183
Query: 181 ATLTVQMAP---IVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRV 237
+ + P + ++ + E G + F C GSP P+ W G I ++
Sbjct: 184 DIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKL--IEENEKY 241
Query: 238 DNIQAEITSDGMNLLKIQNVSR------TAAPLIILCLGVNAAGSDLARASLTVSGP 288
I L ++N+ C N AG D +A L V
Sbjct: 242 ------ILKGSNTELTVRNIINSDGGPYV-------CRATNKAGEDEKQAFLQVFVQ 285
Score = 195 bits (497), Expect = 3e-56
Identities = 58/299 (19%), Positives = 106/299 (35%), Gaps = 21/299 (7%)
Query: 97 LVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED-RMSVLPS---RS 152
+ + +S F C+ G+ + G + R+ V
Sbjct: 2 MALLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSR 61
Query: 153 LQLSDVRLEDAGEYVCEAENAVGKI-SASATLTVQMAPIVRERPSDLRLEVGRDAVFLCG 211
L + + +EDAG Y C+A +A G+ A+ L + RE S + G DA +C
Sbjct: 62 LTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCR 121
Query: 212 IEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRT-AAPLIILCLG 270
+ SP P+ W+ +R + ++ L+I N++++ I C G
Sbjct: 122 VSSSPAPAVSWLYHNEEVTTISDNRF-----AMLANNN--LQILNINKSDEG--IYRCEG 172
Query: 271 VNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG--EGSVQWWRG 328
A ++ + V P P + N T E C+ G E ++ W+R
Sbjct: 173 RVEARGEIDFRDIIVIVNVP-PAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRN 231
Query: 329 EREVGSGPRVNVTGD-GSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNI 386
+ + + + G L + ++ D G Y C + G A L+ +
Sbjct: 232 GKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQ--HHH 288
Score = 173 bits (439), Expect = 2e-48
Identities = 46/188 (24%), Positives = 75/188 (39%), Gaps = 6/188 (3%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQ 66
FR Q G+ A + C P P + W + + + R ++ NL I
Sbjct: 100 TFREVVSPQEFKQGEDAEVVC-RVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQIL 158
Query: 67 DSRKTDDGRYQCVVKNVA-GTRESTDAVLRVLVKPYII--RGPKDTTVSASSIIVFECSV 123
+ K+D+G Y+C + A G + D ++ V V P I + + T + F C
Sbjct: 159 NINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRA 218
Query: 124 GGDAVLTVHWKRLGSAMPE-DRMSVLPS-RSLQLSDVRLEDAGEYVCEAENAVGKISASA 181
G + W R G + E ++ + S L + ++ D G YVC A N G+ A
Sbjct: 219 SGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQA 278
Query: 182 TLTVQMAP 189
L V +
Sbjct: 279 FLQVFVQH 286
Score = 109 bits (274), Expect = 2e-26
Identities = 47/253 (18%), Positives = 79/253 (31%), Gaps = 38/253 (15%)
Query: 188 APIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSD 247
V S + L VG F C G P ++ +G I RV + +
Sbjct: 4 LLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQG--EKIISTQRV-----VVQKE 56
Query: 248 GMN-LLKIQNVSRTAAPLIILCLGVNAAGSDL-ARASLTVSGPDPNPPPVILFGPANQTL 305
G+ L I N + A I C +A G A L + + Q
Sbjct: 57 GVRSRLTIYNANIEDAG-IYRCQATDAKGQTQEATVVLEI-----YQKLTFREVVSPQEF 110
Query: 306 PLRSEARLRCQVRG--EGSVQWWRGEREVGSGP--RVNVTGDGSLVLTDVTKEDSGEYTC 361
+A + C+V +V W EV + R + + +L + ++ K D G Y C
Sbjct: 111 KQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRC 170
Query: 362 VVKSP-HGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQT------ANGL 414
+ G + + + P S + A+G
Sbjct: 171 EGRVEARGEIDFRDIIVIVNV---------PPAISMPQKSFNATAERGEEMTFSCRASGS 221
Query: 415 ---TLAWSRNNQI 424
++W RN ++
Sbjct: 222 PEPAISWFRNGKL 234
Score = 88.7 bits (220), Expect = 2e-19
Identities = 27/96 (28%), Positives = 41/96 (42%), Gaps = 3/96 (3%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQ 66
+ + G+ C G PEP + W +NG I+ EN K + T L ++
Sbjct: 196 SMPQKSFNATAERGEEMTFSC-RASGSPEPAISWFRNGKLIE-ENEKYILKGSNTELTVR 253
Query: 67 DSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYI 102
+ +D G Y C N AG E A L+V V+ +
Sbjct: 254 NIINSDGGPYVCRATNKAGEDEKQ-AFLQVFVQHHH 288
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 229 bits (586), Expect = 9e-65
Identities = 67/379 (17%), Positives = 119/379 (31%), Gaps = 42/379 (11%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQD 67
F S V D L C P T +W N + +L + T L +
Sbjct: 292 FITSNNSNPVEDEDAVALTC-EPEIQN-TTYLWWVNNQSLPVSPRLQLSNDNRT-LTLLS 348
Query: 68 SRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIR-GPKDTTVSASSIIVFECSVGGD 126
+ D G Y+C ++N S +L VL P P T + C +
Sbjct: 349 VTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAASN 408
Query: 127 AVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQ 186
W G+ ++ L +S++ +++G Y C+A N+ S + T+
Sbjct: 409 PPAQYSWLIDGN-------IQQHTQELFISNITEKNSGLYTCQANNSASGHSRTTVKTIT 461
Query: 187 MA----PIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQA 242
++ + +E F C E +W+ N + R+
Sbjct: 462 VSAELPKPSISSNNSKPVEDKDAVAFTCEPEAQNTTYLWWV---NGQSLPVSPRL----- 513
Query: 243 EITSDGMNLLKIQNVSRT-AAPLIILCLGVNAAGSDLAR-ASLTVSGPDPNPPPVILFGP 300
S+G L + NV+R A + C N+ ++ + +L V P + P
Sbjct: 514 -QLSNGNRTLTLFNVTRNDARAYV--CGIQNSVSANRSDPVTLDVLY----GPDTPIISP 566
Query: 301 ANQTLPLRSEARLRCQVRG--EGSVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGE 358
+ + + L C W L + +T ++G
Sbjct: 567 PDSSYLSGANLNLSCHSASNPSPQYSWRINGIPQQHT--------QVLFIAKITPNNNGT 618
Query: 359 YTCVVKSPHGSASWSASLR 377
Y C V + + S
Sbjct: 619 YACFVSNLATGRNNSIVKS 637
Score = 216 bits (552), Expect = 3e-60
Identities = 66/426 (15%), Positives = 125/426 (29%), Gaps = 44/426 (10%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQD 67
S+ V D C P T +W N + +L + T L + +
Sbjct: 114 SISSNNSKPVEDKDAVAFTC-EPETQD-ATYLWWVNNQSLPVSPRLQLSNGNRT-LTLFN 170
Query: 68 SRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKP-YIIRGPKDTTVSASSIIVFECSVGGD 126
+ D Y+C +N R S +L VL P P +T+ + + C +
Sbjct: 171 VTRNDTASYKCETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSCHAASN 230
Query: 127 AVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQ 186
W G+ ++ L + ++ + ++G Y C+A N+ ++ + T+
Sbjct: 231 PPAQYSWFVNGTFQQ-------STQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTIT 283
Query: 187 M----APIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQA 242
+ + +E C E +W+ N + R+
Sbjct: 284 VYAEPPKPFITSNNSNPVEDEDAVALTCEPEIQNTTYLWWV---NNQSLPVSPRL----- 335
Query: 243 EITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLAR-ASLTVSGPDPNPPPVILFGPA 301
++++D L + +V+R C N D + L V P P+
Sbjct: 336 QLSNDN-RTLTLLSVTRNDVGPYE-CGIQNELSVDHSDPVILNVLY----GPDDPTISPS 389
Query: 302 NQTLPLRSEARLRCQVRG--EGSVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEY 359
L C W L ++++T+++SG Y
Sbjct: 390 YTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQHT--------QELFISNITEKNSGLY 441
Query: 360 TCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANG--LTLA 417
TC + S + + ++ P T
Sbjct: 442 TCQANNSASGHSRTTVKTITVS--AELPKPSISSNNSKPVEDKDAVAFTCEPEAQNTTYL 499
Query: 418 WSRNNQ 423
W N Q
Sbjct: 500 WWVNGQ 505
Score = 210 bits (535), Expect = 6e-58
Identities = 83/451 (18%), Positives = 131/451 (29%), Gaps = 55/451 (12%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPID-----------------F 49
+ ++ VA G LL W K
Sbjct: 1 KLTIESTPFNVAEGKEVLLLVHNL-PQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGP 59
Query: 50 ENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVK--PYIIRGPK 107
S R + +L IQ+ + D G Y V E RV + I
Sbjct: 60 AYSGREIIYPNASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNN 119
Query: 108 DTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLP-SRSLQLSDVRLEDAGEY 166
V + F C + W S R+ + +R+L L +V D Y
Sbjct: 120 SKPVEDKDAVAFTCEPETQDATYLWWVNNQSLPVSPRLQLSNGNRTLTLFNVTRNDTASY 179
Query: 167 VCEAENAVG-KISASATLTVQ-MAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWML 224
CE +N V + S S L V P + G + C +PP W +
Sbjct: 180 KCETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFV 239
Query: 225 EGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLT 284
G S L I N++ + C N+ T
Sbjct: 240 NGTF---------------QQSTQ--ELFIPNITVNNSGSYT-CQAHNSDTGLNRTTVTT 281
Query: 285 VSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRGEG-SVQWWRGEREVGSGPRVNVTGD 343
++ P P I + + L C+ + + WW + + PR+ ++ D
Sbjct: 282 ITVYAEPPKPFITS-NNSNPVEDEDAVALTCEPEIQNTTYLWWVNNQSLPVSPRLQLSND 340
Query: 344 G-SLVLTDVTKEDSGEYTCVVKSPHGSA-SWSASLR-FESPTNPNIGFFRAPEPSTYPGP 400
+L L VT+ D G Y C +++ S L P +P I PS
Sbjct: 341 NRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTI------SPSYTYYR 394
Query: 401 PTKPTLVNQTANG---LTLAWSRNNQIGSSS 428
P ++ A +W + I +
Sbjct: 395 PGVNLSLSCHAASNPPAQYSWLIDGNIQQHT 425
Score = 162 bits (412), Expect = 7e-42
Identities = 53/294 (18%), Positives = 79/294 (26%), Gaps = 49/294 (16%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQD 67
+ P G L C +P W +G+ L I +
Sbjct: 384 PTISPSYTYYRPGVNLSLSC-HAASNPPAQYSWLIDGNIQQ----------HTQELFISN 432
Query: 68 SRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYI----IRGPKDTTVSASSIIVFECSV 123
+ + G Y C N A T V + V + I V + F C
Sbjct: 433 ITEKNSGLYTCQANNSASGHSRT-TVKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEP 491
Query: 124 GGDAVLTVHWKRLGSAMPEDRMSVLPS-RSLQLSDVRLEDAGEYVCEAENAVGKI-SASA 181
+ W S R+ + R+L L +V DA YVC +N+V S
Sbjct: 492 EAQNTTYLWWVNGQSLPVSPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPV 551
Query: 182 TLTVQMAP-IVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNI 240
TL V P P D G + C +P P W + G
Sbjct: 552 TLDVLYGPDTPIISPPDSSYLSGANLNLSCHSASNPSPQYSWRING-------------- 597
Query: 241 QAEITSDGMNLLKIQNVSR------TAAPLIILCLGVNAAGSDLARASLTVSGP 288
+ L I ++ C N A +++
Sbjct: 598 -IPQQHTQV--LFIAKITPNNNGTYA-------CFVSNLATGRNNSIVKSITVS 641
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 204 bits (520), Expect = 4e-59
Identities = 76/304 (25%), Positives = 120/304 (39%), Gaps = 34/304 (11%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN--LAI 65
F +PK Q +G A C G P+P + W K G ++ + + + + L I
Sbjct: 9 FIKEPKDQIGVSGGVASFVC-QATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRI 67
Query: 66 QDSRKTDD-GRYQCVVKNVAGTRESTDAVLRVLVK-------PYIIRGPKDTTVSASSII 117
Q R D Y+CV +N G A L VL + P I GP+ V +
Sbjct: 68 QPLRTPRDENVYECVAQNSVGEITVH-AKLTVLREDQLPSGFPNIDMGPQLKVVERTRTA 126
Query: 118 VFECSVGGDAVLTVHWKR----LGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENA 173
C+ G+ + W + + + R+ L S +LQ+ D G+Y C A N+
Sbjct: 127 TMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNS 186
Query: 174 VG-KISASATLTVQ---MAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRS 229
G + S+ A L V+ +AP P + G + C GSP P WM
Sbjct: 187 AGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQGAED- 245
Query: 230 LIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPD 289
+ P D + G N+L++ +V +A C+ +++ G A A +TV
Sbjct: 246 -LTPEDDM--------PVGRNVLELTDVKDSA---NYTCVAMSSLGVIEAVAQITVKSL- 292
Query: 290 PNPP 293
P
Sbjct: 293 PKAG 296
Score = 195 bits (498), Expect = 4e-56
Identities = 71/311 (22%), Positives = 109/311 (35%), Gaps = 40/311 (12%)
Query: 96 VLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVL-----PS 150
P I+ PKD + + F C GD V W + G + R +
Sbjct: 3 GEEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAG 62
Query: 151 RSLQLSDVRL-EDAGEYVCEAENAVGKISASATLTVQM-------APIVRERPSDLRLEV 202
L++ +R D Y C A+N+VG+I+ A LTV P + P +E
Sbjct: 63 AVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVER 122
Query: 203 GRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSR--- 259
R A LC G+P P W + + P I+ G L+I++
Sbjct: 123 TRTATMLCAASGNPDPEITWFKDFLP--VDPSASNGRIK--QLRSGA--LQIESSEETDQ 176
Query: 260 ---TAAPLIILCLGVNAAGSDL-ARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRC 315
C+ N+AG + A+L V + P P + + + C
Sbjct: 177 GKYE-------CVATNSAGVRYSSPANLYVRVQNV--APRFSILPMSHEIMPGGNVNITC 227
Query: 316 QVRGE--GSVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWS 373
G V+W +G ++ + V G VL +DS YTCV S G
Sbjct: 228 VAVGSPMPYVKWMQGAEDLTPEDDMPV---GRNVLELTDVKDSANYTCVAMSSLGVIEAV 284
Query: 374 ASLRFESPTNP 384
A + +S
Sbjct: 285 AQITVKSLPKA 295
Score = 187 bits (476), Expect = 3e-53
Identities = 51/195 (26%), Positives = 85/195 (43%), Gaps = 7/195 (3%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENS-KRLRLVDGTNLAI 65
+ P+ + V TA + C G+P+P + W K+ P+D S R++ + L I
Sbjct: 110 NIDMGPQLKVVERTRTATMLC-AASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQI 168
Query: 66 QDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVK---PYIIRGPKDTTVSASSIIVFECS 122
+ S +TD G+Y+CV N AG R S+ A L V V+ P P + + C
Sbjct: 169 ESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCV 228
Query: 123 VGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASAT 182
G + V W + + + +P L ++D+ Y C A +++G I A A
Sbjct: 229 AVGSPMPYVKWMQGAEDLTPED--DMPVGRNVLELTDVKDSANYTCVAMSSLGVIEAVAQ 286
Query: 183 LTVQMAPIVRERPSD 197
+TV+ P +
Sbjct: 287 ITVKSLPKAGTKHHH 301
Score = 127 bits (320), Expect = 2e-32
Identities = 49/201 (24%), Positives = 80/201 (39%), Gaps = 13/201 (6%)
Query: 184 TVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAE 243
T + P + P D G A F+C G P P W +G + R + I+ +
Sbjct: 2 TGEEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKK---VNSQRFETIEFD 58
Query: 244 ITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPD--PNPPPVILFGPA 301
++ +L+IQ + + C+ N+ G A LTV D P+ P I GP
Sbjct: 59 ESAGA--VLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQ 116
Query: 302 NQTLPLRSEARLRCQVRG--EGSVQWWRGEREV---GSGPRVNVTGDGSLVLTDVTKEDS 356
+ + A + C G + + W++ V S R+ G+L + + D
Sbjct: 117 LKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQ 176
Query: 357 GEYTCVVKSPHGSA-SWSASL 376
G+Y CV + G S A+L
Sbjct: 177 GKYECVATNSAGVRYSSPANL 197
Score = 65.6 bits (160), Expect = 1e-11
Identities = 31/147 (21%), Positives = 49/147 (33%), Gaps = 21/147 (14%)
Query: 293 PPVILFGPANQTLPLRSEARLRCQVRGE--GSVQWWRGEREVGSGPRVNVT----GDGSL 346
PP + P +Q A CQ G+ V W + ++V S + L
Sbjct: 6 PPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVL 65
Query: 347 VLTDV-TKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPT 405
+ + T D Y CV ++ G + A L GF P+ GP K
Sbjct: 66 RIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGF-----PNIDMGPQLKVV 120
Query: 406 LVNQT------ANGL---TLAWSRNNQ 423
+T A+G + W ++
Sbjct: 121 ERTRTATMLCAASGNPDPEITWFKDFL 147
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 201 bits (513), Expect = 3e-58
Identities = 69/323 (21%), Positives = 109/323 (33%), Gaps = 39/323 (12%)
Query: 187 MAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITS 246
MAP +E +L + +A +C + G P P W +G + + +
Sbjct: 3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGL----KYRIQEFK 58
Query: 247 DGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLP 306
G + L I +V+ A + N GS ASL V P P L G
Sbjct: 59 GGYHQLIIASVTDDDA-TVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHAL 117
Query: 307 LRSEARLRCQVRGEG--SVQWWRGEREVGSGPRVNVTGDGS----LVLTDVTKEDSGEYT 360
++ G+ + W +G+ + + V S + V ++D+G Y
Sbjct: 118 RGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYV 177
Query: 361 CVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGLTLAWSR 420
K+ G + L P PP + + + + + L W+
Sbjct: 178 VCAKNRFGIDQKTVELDVADV----------------PDPPRGVKVSDVSRDSVNLTWTE 221
Query: 421 NNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVGLTYTF 480
G S + Y VE T W+RV TV NL +Y F
Sbjct: 222 PASDGGSKITNYIVEKC-----------ATTAERWLRVGQ-ARETRYTVINLFGKTSYQF 269
Query: 481 LVRALNSHGLSAPSPLSDEIVLR 503
V A N GLS PS S+ + +
Sbjct: 270 RVIAENKFGLSKPSEPSEPTITK 292
Score = 152 bits (387), Expect = 3e-41
Identities = 52/217 (23%), Positives = 84/217 (38%), Gaps = 19/217 (8%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSK-RLRLVDGTN--L 63
F+ + ++ V A L C GHP+P + W + G I + K R++ G L
Sbjct: 6 HFKEELRNLNVRYQSNATLVC-KVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQL 64
Query: 64 AIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYI-----IRGPKDTTVSASSIIV 118
I D YQ N G+ T A L V V I + G ++
Sbjct: 65 IIASVTDDDATVYQVRATNQGGSVSGT-ASLEVEVPAKIHLPKTLEGMGAVHALRGEVVS 123
Query: 119 FECSVGGDAVLTVHWKRLGSAM-PEDRMSVLPSRS----LQLSDVRLEDAGEYVCEAENA 173
+ G + W++ + V+ +RS + + V +DAG YV A+N
Sbjct: 124 IKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNR 183
Query: 174 VGKISASATLTVQMAPIVRERPSDLRL-EVGRDAVFL 209
G + L V P + P +++ +V RD+V L
Sbjct: 184 FGIDQKTVELDVADVP---DPPRGVKVSDVSRDSVNL 217
Score = 131 bits (331), Expect = 8e-34
Identities = 45/213 (21%), Positives = 67/213 (31%), Gaps = 30/213 (14%)
Query: 98 VKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED----RMSVLPSR-- 151
+ P+ ++ V S C V G V W R G + D R+
Sbjct: 3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYH 62
Query: 152 SLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVR-----ERPSDLRLEVGRDA 206
L ++ V +DA Y A N G +S +A+L V++ + E + G
Sbjct: 63 QLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVV 122
Query: 207 VFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSR------T 260
G P P W + LI Q +T +L+ V R
Sbjct: 123 SIKIPFSGKPDPVITWQKGQD--LIDNNGH---YQVIVTRSFTSLVFPNGVERKDAGFYV 177
Query: 261 AAPLIILCLGVNAAGSDLARASLTVSGPDPNPP 293
N G D L V+ P+PP
Sbjct: 178 -------VCAKNRFGIDQKTVELDVADV-PDPP 202
Score = 86.4 bits (214), Expect = 2e-18
Identities = 43/205 (20%), Positives = 69/205 (33%), Gaps = 16/205 (7%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN--LAI 65
+ G+ ++ P G P+P + W+K ID ++ + +
Sbjct: 107 TLEGMGAVHALRGEVVSIKI-PFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFP 165
Query: 66 QDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIV---FECS 122
+ D G Y KN G + T L V P RG K + VS S+ + S
Sbjct: 166 NGVERKDAGFYVVCAKNRFGIDQKT-VELDVADVPDPPRGVKVSDVSRDSVNLTWTEPAS 224
Query: 123 VGGDAVL--TVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEY---VCEAENAVGKI 177
GG + V + E + V +R + + + L Y V AEN G
Sbjct: 225 DGGSKITNYIVEKCATTA---ERWLRVGQARETRYTVINLFGKTSYQFRVI-AENKFGLS 280
Query: 178 SASATLTVQMAPIVRERPSDLRLEV 202
S + + R + EV
Sbjct: 281 KPSEPSEPTITKEDKTRAMNYDEEV 305
Score = 42.8 bits (101), Expect = 3e-04
Identities = 20/103 (19%), Positives = 37/103 (35%), Gaps = 5/103 (4%)
Query: 640 EPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTP 699
+P +++D ++ SV L W P I Y + + + + T
Sbjct: 200 DPPRGVKVSD---VSRDSVNLTWTEP-ASDGGSKITNYIVEKCATTAERWLRVGQARET- 254
Query: 700 TLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGPEPR 742
+ NL Y + A N+ G S P+ ++T + R
Sbjct: 255 RYTVINLFGKTSYQFRVIAENKFGLSKPSEPSEPTITKEDKTR 297
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta
trefoil, IG domain, growth factor/growth factor receptor
complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 334
Score = 199 bits (507), Expect = 4e-57
Identities = 68/324 (20%), Positives = 108/324 (33%), Gaps = 45/324 (13%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQD 67
Q + +GD L C PP G P VW K+G + S+R+ + L + +
Sbjct: 11 EPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGL--VPSERVLVGPQR-LQVLN 67
Query: 68 SRKTDDGRYQCVVKNVAGT--------------------RESTDAVLRVLVKPYIIR--- 104
+ D G Y C + + + PY R
Sbjct: 68 ASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPER 127
Query: 105 -GPKDTTVSASSIIVFECSVGGDAVLTVHWKR----LGSAMPEDRMSVLPSR-SLQLSDV 158
K V A++ + F C G+ ++ W + + + + SL + V
Sbjct: 128 MDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESV 187
Query: 159 RLEDAGEYVCEAENAVGKISASATLTVQ-----MAPIVRERPSDLRLEVGRDAVFLCGIE 213
D G Y C EN G I + TL V + P++ +G D F C +
Sbjct: 188 VPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVY 247
Query: 214 GSPPPSTFWM--LEGNRSLIYPGDR-----VDNIQAEITSDGMNLLKIQNVSRTAAPLII 266
P W+ +E N S + P + A T + +L + NV+ A
Sbjct: 248 SDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYT 307
Query: 267 LCLGVNAAGSDLARASLTVSGPDP 290
CL N+ G A L V +
Sbjct: 308 -CLAGNSIGFSHHSAWLVVLPAEE 330
Score = 174 bits (442), Expect = 2e-48
Identities = 68/328 (20%), Positives = 104/328 (31%), Gaps = 62/328 (18%)
Query: 100 PYIIRGPKDTTVSASSIIVFECSV-GGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDV 158
+ + + C GG + W + G+ + ++ + LQ+ +
Sbjct: 9 GPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVGPQRLQVLNA 68
Query: 159 RLEDAGEYVCEAENAVG---------------------KISASATLTVQMAP----IVRE 193
ED+G Y C + A T AP R
Sbjct: 69 SHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERM 128
Query: 194 RPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLK 253
L + F C G+P PS W+ G R+ I+ L
Sbjct: 129 DKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGRE--FRGEHRIGGIKLR---HQQWSLV 183
Query: 254 IQNVSR------TAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPL 307
+++V T C+ N GS +L V P+ P + PANQT L
Sbjct: 184 MESVVPSDRGNYT-------CVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVL 236
Query: 308 RSEARLRCQVRG--EGSVQWWRGEREVGS----------------GPRVNVTGDGSLVLT 349
S+ C+V + +QW + GS G L L
Sbjct: 237 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLH 296
Query: 350 DVTKEDSGEYTCVVKSPHGSASWSASLR 377
+VT ED+GEYTC+ + G + SA L
Sbjct: 297 NVTFEDAGEYTCLAGNSIGFSHHSAWLV 324
Score = 160 bits (406), Expect = 2e-43
Identities = 58/208 (27%), Positives = 80/208 (38%), Gaps = 26/208 (12%)
Query: 6 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN--L 63
R+ K V A +T C P G+P P++ W KNG E+ + L
Sbjct: 124 RPERMDKKLLAVPAANTVRFRC-PAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSL 182
Query: 64 AIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVK-----PYIIRGPKDTTVSASSIIV 118
++ +D G Y CVV+N G+ T L VL + P + T S +
Sbjct: 183 VMESVVPSDRGNYTCVVENKFGSIRQT-YTLDVLERSPHRPILQAGLPANQTAVLGSDVE 241
Query: 119 FECSVGGDAVLTVHWKR----LGSAMPED-------------RMSVLPSRSLQLSDVRLE 161
F C V DA + W + GS + D + L L +V E
Sbjct: 242 FHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFE 301
Query: 162 DAGEYVCEAENAVGKISASATLTVQMAP 189
DAGEY C A N++G SA L V A
Sbjct: 302 DAGEYTCLAGNSIGFSHHSAWLVVLPAE 329
Score = 61.6 bits (149), Expect = 4e-10
Identities = 22/117 (18%), Positives = 35/117 (29%), Gaps = 6/117 (5%)
Query: 290 PNPPPVILFGPANQTLPLRSEARLRCQVRG---EGSVQWWRGEREVGSGPRVNVTGDGSL 346
P L C G G W + + RV V G L
Sbjct: 5 AEVPGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLV-GPQRL 63
Query: 347 VLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPT--NPNIGFFRAPEPSTYPGPP 401
+ + + EDSG Y+C + + ++P+ + G A + G P
Sbjct: 64 QVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAP 120
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, hematopoietic cytokine-receptor
complex, cell surface, EXTR complex; 7.80A {Homo
sapiens}
Length = 527
Score = 204 bits (520), Expect = 8e-57
Identities = 63/505 (12%), Positives = 124/505 (24%), Gaps = 78/505 (15%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQ 66
+ + V + L+ + +W ++ + L+ ++ I
Sbjct: 50 GTVYEAAAVEVDVSASITLQV-LVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVIL 108
Query: 67 DSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGD 126
+T G Y +++ A + + + C
Sbjct: 109 KMTETQAGEYLLFIQSEATNYTIL-FTVSIRNTLLYTLRRPYFRKMENQ-DALVCISESV 166
Query: 127 AVLTVHWKRLGS---AMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGK-ISASAT 182
V W S + E+ +V+ L + + C A N +G+ + T
Sbjct: 167 PEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHE---LFGTDIRCCARNELGRECTRLFT 223
Query: 183 LTVQMAPIVRERPSDLRLEVGRDAVFLCGI-EGSPPPSTFWMLEGNRSLIYPGDRVDNIQ 241
+ + P L L+VG C + W LE +
Sbjct: 224 IDLNQTPQT--TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYS 281
Query: 242 AEITSDGMNLLKIQNVSR------TAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPV 295
T + + +V+R T C A +T+
Sbjct: 282 TNRTMIRILFAFVSSVARNDTGYYT-------CSSSKHPSQS---ALVTIVE-----KGF 326
Query: 296 ILFGPANQTLPLRSEARLRCQVRGEG----SVQWWRGEREVGSGPRVNVTGDGSLVLTDV 351
I +++ + VR + W + + + S+
Sbjct: 327 INATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKG-LDNGYSISKFCN 385
Query: 352 TKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPST-------YPGPPTKP 404
K GEY ++ + +L P + S YP P
Sbjct: 386 HKHQPGEYIFHAENDDAQFTKMFTLNIRRK--PQV--LAEASASQASCFSDGYPLP---- 437
Query: 405 TLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPS 464
+ W + + S + E + G + S
Sbjct: 438 ----------SWTWKKCSDK-SPNCTEEITEGVWNRKANRKVFGQWVS-----------S 475
Query: 465 PILTVTNLTVGLTYTFLVRALNSHG 489
L ++ G A NS G
Sbjct: 476 STLNMSEAIKGFLVK--CCAYNSLG 498
Score = 196 bits (499), Expect = 5e-54
Identities = 47/316 (14%), Positives = 91/316 (28%), Gaps = 29/316 (9%)
Query: 4 LREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGT-- 61
L + + + G+ + C + L W+ ++ N +
Sbjct: 226 LNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRT 285
Query: 62 -----NLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIR--GPKDTTVSAS 114
+ + D G Y C A++ ++ K +I +D +
Sbjct: 286 MIRILFAFVSSVARNDTGYYTCSSSKHPSQ----SALVTIVEKGFINATNSSEDYEIDQY 341
Query: 115 SIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAV 174
F + W + P ++ + S+ GEY+ AEN
Sbjct: 342 EEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDD 401
Query: 175 GKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPG 234
+ + TL ++ P V S + C +G P PS W ++S
Sbjct: 402 AQFTKMFTLNIRRKPQVLAEASASQAS--------CFSDGYPLPSWTWKKCSDKSPNCTE 453
Query: 235 DRVDNIQAEITSDGM----NLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDP 290
+ + + + + N+S ++ C N+ G+ L G
Sbjct: 454 EITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAYNSLGTSCETILLNSPG--- 510
Query: 291 NPPPVILFGPANQTLP 306
P P I G
Sbjct: 511 -PFPFIQDGGTKHHHH 525
Score = 187 bits (477), Expect = 3e-51
Identities = 45/401 (11%), Positives = 94/401 (23%), Gaps = 62/401 (15%)
Query: 10 VQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSR 69
+ + L C PEP + W + + +V + +
Sbjct: 144 TLRRPYFRKMENQDALVC-ISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHEL- 201
Query: 70 KTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSV-GGDAV 128
+C +N G + + + P + + C +
Sbjct: 202 --FGTDIRCCARNELGRECTRLFTIDLNQTPQTT--LPQLFLKVGEPLWIRCKAVHVNHG 257
Query: 129 LTVHWKRLGSAMPE----------DRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKIS 178
+ W+ A+ E +++ +S V D G Y C + +
Sbjct: 258 FGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQ-- 315
Query: 179 ASATLTVQMAPIVR--ERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDR 236
SA +T+ + D ++ + F + P W +
Sbjct: 316 -SALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTW--------TFSRKS 366
Query: 237 VDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVI 296
Q + + + + + N +L + P +
Sbjct: 367 FPCEQKGLDNGY--SISKFCNHKHQP-GEYIFHAENDDAQFTKMFTLNI-----RRKPQV 418
Query: 297 LFGPANQTLPLRSEARLRCQVRGEG--SVQWWR--------------GEREVGSGPRVNV 340
L + C G S W + G + +V
Sbjct: 419 LAEASASQAS--------CFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFG 470
Query: 341 TGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESP 381
S L C + G++ + L P
Sbjct: 471 QWVSSSTLNMSEAIKGFLVKCCAYNSLGTSCETILLNSPGP 511
Score = 158 bits (401), Expect = 3e-41
Identities = 51/382 (13%), Positives = 107/382 (28%), Gaps = 50/382 (13%)
Query: 61 TNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFE 120
N DS Y V ++ + V S+ I +
Sbjct: 15 INHKNNDSSVGKSSSYPMVSESPEDL-----GCALRPQSSGTVYEAAAVEVDVSASITLQ 69
Query: 121 CSVGGDAVLTVHWKRLGSAMPED---RMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKI 177
V ++ W S++ + S+ + + AGEY+ ++
Sbjct: 70 VLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNY 129
Query: 178 SASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRV 237
+ T++++ + R R +DA+ +C E P P W+L ++ +
Sbjct: 130 TILFTVSIRNTLLYTLRRPYFRKMENQDAL-VCISESVPEPIVEWVLCDSQGESCKEES- 187
Query: 238 DNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARA-SLTVSGPDPNPPPVI 296
A + + L ++ C N G + R ++ + N P
Sbjct: 188 ---PAVVKKEEKVLHELFGTDIR-------CCARNELGRECTRLFTIDL-----NQTPQT 232
Query: 297 LFGPANQTLPLRSEARLRCQVRG---EGSVQWWRGEREVGSGPRVNVTG---------DG 344
L + +RC+ + W + + G ++
Sbjct: 233 T--LPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRIL 290
Query: 345 SLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKP 404
++ V + D+G YTC SA + N Y +
Sbjct: 291 FAFVSSVARNDTGYYTCSSSKHPSQ---SALVTIVEKGFINA----TNSSEDYEIDQYEE 343
Query: 405 TLVNQTANG---LTLAWSRNNQ 423
+ + W+ + +
Sbjct: 344 FCFSVRFKAYPQIRCTWTFSRK 365
Score = 83.6 bits (206), Expect = 1e-16
Identities = 44/363 (12%), Positives = 95/363 (26%), Gaps = 73/363 (20%)
Query: 157 DVRLEDAGEYVC----EAENAVGKISASA-------------TLTVQMAPIVRERPSDLR 199
+ +D C N +S+ L Q + V E + +
Sbjct: 1 ETGNQDLPVIKCVLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYE-AAAVE 59
Query: 200 LEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSR 259
++V ++ S W+ + + P + N G+ + I ++
Sbjct: 60 VDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQN-------RGVVSMVILKMTE 112
Query: 260 T-AAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVR 318
T A L + A + ++++ + + ++ L C
Sbjct: 113 TQAG--EYLLFIQSEATNYTILFTVSI-----RNTLLYTLRRPYFR-KMENQDALVCISE 164
Query: 319 G--EGSVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASL 376
E V+W + + S + + + C ++ G +
Sbjct: 165 SVPEPIVEWVLCDSQGESCKE-ESPAVVKKEEKVLHELFGTDIRCCARNELGREC-TRLF 222
Query: 377 RFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGL----TLAWSRNNQIGSSSLLGY 432
+ P P+ G +P + A + L W N
Sbjct: 223 TIDLNQTPQT---TLPQLFLKVG---EPLWIRCKAVHVNHGFGLTWELEN---------- 266
Query: 433 QVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTV---GLTYTFLVRALNSHG 489
+ L +T+ T + V+++ G YT +
Sbjct: 267 ------KALE---EGNYFEMSTYSTNRTMIRILFAFVSSVARNDTG-YYT--CSSSKHPS 314
Query: 490 LSA 492
SA
Sbjct: 315 QSA 317
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 189 bits (481), Expect = 2e-55
Identities = 51/182 (28%), Positives = 85/182 (46%), Gaps = 3/182 (1%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQ 66
++ + A C +P+P + W +N I +++ +G L I
Sbjct: 9 VITTPLETVDALVEEVATFMC-AVESYPQPEISWTRNKILIKLFDTRYSIRENGQLLTIL 67
Query: 67 DSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGD 126
+DDG Y C N G + L+V +KP I R P + + V C+ G+
Sbjct: 68 SVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCTTMGN 127
Query: 127 AVLTVHWKRLGSAMPED-RMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKI-SASATLT 184
+V W + SA+ E+ R++VL S SL++ +V+ EDAG+Y C A+N++G S L
Sbjct: 128 PKPSVSWIKGDSALRENSRIAVLESGSLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLE 187
Query: 185 VQ 186
V+
Sbjct: 188 VE 189
Score = 139 bits (351), Expect = 9e-38
Identities = 45/202 (22%), Positives = 76/202 (37%), Gaps = 27/202 (13%)
Query: 95 RVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGS--AMPEDRMSVLPSRS 152
++ P I + + F C+V + W R + + R S+ +
Sbjct: 3 KLPKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQ 62
Query: 153 -LQLSDVRLEDAGEYVCEAENAVG-KISASATLTVQMAPIVRERPSDLRLEVGRDAVFLC 210
L + V D G Y C A N VG + + L V+M P + P ++++ G AV C
Sbjct: 63 LLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLPC 122
Query: 211 GIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSR------TAAPL 264
G+P PS W+ S + R+ + G L+I NV +
Sbjct: 123 TTMGNPKPSVSWIKGD--SALRENSRI-----AVLESGS--LRIHNVQKEDAGQYR---- 169
Query: 265 IILCLGVNAAGSDLAR-ASLTV 285
C+ N+ G+ ++ L V
Sbjct: 170 ---CVAKNSLGTAYSKLVKLEV 188
Score = 125 bits (316), Expect = 4e-33
Identities = 53/198 (26%), Positives = 78/198 (39%), Gaps = 19/198 (9%)
Query: 185 VQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEI 244
+ AP++ + V A F+C +E P P W + R I
Sbjct: 4 LPKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNK-ILIKLFDTRY-----SI 57
Query: 245 TSDGMNLLKIQNVSRT-AAPLIILCLGVNAAGSDLAR-ASLTVSGPDPNPPPVILFGPAN 302
+G LL I +V + I C N G + +L V P I P N
Sbjct: 58 RENG-QLLTILSVEDSDDG--IYCCTANNGVGGAVESCGALQVKMK-----PKITRPPIN 109
Query: 303 QTLPLRSEARLRCQVRG--EGSVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYT 360
+ +A L C G + SV W +G+ + R+ V GSL + +V KED+G+Y
Sbjct: 110 VKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESGSLRIHNVQKEDAGQYR 169
Query: 361 CVVKSPHGSA-SWSASLR 377
CV K+ G+A S L
Sbjct: 170 CVAKNSLGTAYSKLVKLE 187
Score = 103 bits (258), Expect = 3e-25
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 3/92 (3%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQ 66
+ P + ++ G A+L C G+P+P++ W K + + R+ +++ +L I
Sbjct: 102 KITRPPINVKIIEGLKAVLPC-TTMGNPKPSVSWIKGDSALR--ENSRIAVLESGSLRIH 158
Query: 67 DSRKTDDGRYQCVVKNVAGTRESTDAVLRVLV 98
+ +K D G+Y+CV KN GT S L V V
Sbjct: 159 NVQKEDAGQYRCVAKNSLGTAYSKLVKLEVEV 190
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 195 bits (496), Expect = 7e-55
Identities = 78/421 (18%), Positives = 147/421 (34%), Gaps = 56/421 (13%)
Query: 99 KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRL--------GSAMPEDRMSVLPS 150
+P+II+ K+ T + + C G+ + + WKR G + R+ V
Sbjct: 1 QPHIIQ-LKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQ 59
Query: 151 R---SLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAV 207
SL + DV+L D+G Y CEA + +G S L ++ AP + G
Sbjct: 60 HGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPIN 119
Query: 208 FLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRT-AAPLII 266
C ++ +PP S W + + + N++ ++ +L+I S
Sbjct: 120 ISCDVKSNPPASIHWRRDKLV--LPAKNTT-NLK-TYSTGRKMILEIAPTSDNDFG--RY 173
Query: 267 LCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARL---RCQVRGEGSV 323
C N G+ L ++ P+ P + +QT A++ + G +
Sbjct: 174 NCTATNHIGTRFQEYILALADV-PSSPYGVKIIELSQT-----TAKVSFNKPDSHGGVPI 227
Query: 324 QWWRGE-REVGSGPRVNVTGDG---SLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFE 379
++ + +EV S V G +VL ++ + E + G +S F+
Sbjct: 228 HHYQVDVKEVASEIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQ 287
Query: 380 SPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSR 439
+ P P PP + L+ ++ + G + +L Y V+ R
Sbjct: 288 TL------------PVREPSPP-SIHGQPSSGKSFKLSITKQDD-GGAPILEYIVKY--R 331
Query: 440 PLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDE 499
W+ + + +L + Y + A N G S P+
Sbjct: 332 SKDKEDQ--------WLEKKVQGNKDHIILEHLQWTMGYEVQITAANRLGYSEPTVYEFS 383
Query: 500 I 500
+
Sbjct: 384 M 384
Score = 154 bits (390), Expect = 7e-41
Identities = 60/370 (16%), Positives = 118/370 (31%), Gaps = 56/370 (15%)
Query: 10 VQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENS--------KRLRLVDGT 61
+Q K++ L C G P P + WK+ F + +
Sbjct: 5 IQLKNETTYENGQVTLVC-DAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSS 63
Query: 62 NLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFEC 121
+L I+D + +D GRY C + G + + L + P I + I C
Sbjct: 64 SLHIKDVKLSDSGRYDCEAASRIGGHQKS-MYLDIEYAPKFISNQTIYYSWEGNPINISC 122
Query: 122 SVGGDAVLTVHWKRLGSAMPED------RMSVLPSRSLQLSDVRLEDAGEYVCEAENAVG 175
V + ++HW+R +P S L+++ D G Y C A N +G
Sbjct: 123 DVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIG 182
Query: 176 KISASATLTVQMAPIVRERPSDLRL-EVGRDAVFLCGIEGSPPPSTFWMLEGNRSLI-YP 233
L + P P +++ E+ + + + P S G + Y
Sbjct: 183 TRFQEYILALADVP---SSPYGVKIIELSQTTAKV---SFNKPDSH-----GGVPIHHY- 230
Query: 234 GDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIIL---------CLGVNAAG-SDLARASL 283
+ + + + + + +T L L VN G D ++ +
Sbjct: 231 -----QVDVKEVASEIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEI 285
Query: 284 TVSGPD--PNPPPVILFGPANQTLPL--RSEARLRCQVRG-------EGSVQWWRGEREV 332
+ P P+PP + + ++ L + + + W ++
Sbjct: 286 FQTLPVREPSPPSIHGQPSSGKSFKLSITKQDDGGAPILEYIVKYRSKDKEDQWLEKKVQ 345
Query: 333 GSGPRVNVTG 342
G+ + +
Sbjct: 346 GNKDHIILEH 355
Score = 107 bits (270), Expect = 4e-25
Identities = 40/203 (19%), Positives = 72/203 (35%), Gaps = 10/203 (4%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG---TNL 63
+F G+ + C + +P ++ W+++ + +N+ L+ L
Sbjct: 102 KFISNQTIYYSWEGNPINISC-DVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMIL 160
Query: 64 AIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIV---FE 120
I + D GRY C N GTR +L + P G K +S ++ V
Sbjct: 161 EIAPTSDNDFGRYNCTATNHIGTRFQE-YILALADVPSSPYGVKIIELSQTTAKVSFNKP 219
Query: 121 CSVGGDAVL--TVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKIS 178
S GG + V K + S + + S + L+++ E A N G+
Sbjct: 220 DSHGGVPIHHYQVDVKEVASEIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGD 279
Query: 179 ASATLTVQMAPIVRERPSDLRLE 201
S Q P+ P + +
Sbjct: 280 YSKIEIFQTLPVREPSPPSIHGQ 302
Score = 72.5 bits (178), Expect = 2e-13
Identities = 26/186 (13%), Positives = 59/186 (31%), Gaps = 14/186 (7%)
Query: 551 EVKPMTSTSVKLTWEILNTD---YIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGL 607
++ ++ T+ K+++ ++ I + + + + + G + ++ L
Sbjct: 203 KIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVRSH---GVQTMVVLNNL 259
Query: 608 AHYSRYEFFLVPF--FGSVDGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPP 665
+ YE + G G S + +TL P + + S L
Sbjct: 260 EPNTTYEIRVAAVNGKGQ--GDYSKIEIFQTLPVREPSPPSIH-GQPSSGKSFKLSITKQ 316
Query: 666 PVGTHNGVIRTYQI-IVGGGNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGT 724
I Y + + V + ++L +L + Y V + A NR G
Sbjct: 317 D--DGGAPILEYIVKYRSKDKEDQWLEKKVQGNKDHIILEHLQWTMGYEVQITAANRLGY 374
Query: 725 GPYSRP 730
+
Sbjct: 375 SEPTVY 380
Score = 46.3 bits (110), Expect = 3e-05
Identities = 23/103 (22%), Positives = 40/103 (38%), Gaps = 6/103 (5%)
Query: 640 EPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGV-IRTYQIIVGGGNNSALINMTVSAST 698
++ + L+ T+ + + P +H GV I YQ+ V + +
Sbjct: 197 SSPYGVKIIE---LSQTTAKVSFNKP--DSHGGVPIHHYQVDVKEVASEIWKIVRSHGVQ 251
Query: 699 PTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGPEP 741
++L NL Y + +AA N G G YS+ + EP
Sbjct: 252 TMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPVREP 294
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 184 bits (469), Expect = 4e-52
Identities = 52/325 (16%), Positives = 92/325 (28%), Gaps = 57/325 (17%)
Query: 94 LRVLVKPYIIRGPKDTTVSASSIIVFECSV-GGDAVLTVHWKRLGSAMPEDRMSVLPS-- 150
+ P+ + V+ ++ +C V + W + + D
Sbjct: 2 IDPFTGPHFVEYLSWE-VTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGI 60
Query: 151 RSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLC 210
+L +++ +DAG Y ++ GK + L + + D
Sbjct: 61 CTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQS 120
Query: 211 GIEG----------SPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDG-MNLLKIQNVSR 259
EG W G S I DRV + G L+I +
Sbjct: 121 TAEGIQLYSFVTYYVEDLKVNWSHNG--SAIRYSDRV-----KTGVTGEQIWLQINEPTP 173
Query: 260 ------TAAPLIILCLGVNAAGSDLARASLTVSGPD----------------PNPPPVIL 297
+ L+ D N V+
Sbjct: 174 NDKGKYV-------MELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLG 226
Query: 298 FGPANQTLPLRSEARLRCQVRGE--GSVQWWRGEREVGSGPRVNVT----GDGSLVLTDV 351
P T+ L C V G+ V W + E+ + S N+ + V
Sbjct: 227 GLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGV 286
Query: 352 TKEDSGEYTCVVKSPHGSASWSASL 376
+ DSG+Y VVK+ +GS + ++
Sbjct: 287 STADSGKYGLVVKNKYGSETSDFTV 311
Score = 183 bits (466), Expect = 9e-52
Identities = 58/322 (18%), Positives = 108/322 (33%), Gaps = 57/322 (17%)
Query: 10 VQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN-LAIQDS 68
V+ S V LL+C E +VW K+ I ++ DG L I +
Sbjct: 11 VEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREI--SVDEKHDFKDGICTLLITEF 68
Query: 69 RKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAV 128
K D G Y+ ++K+ G +S L ++ +++ + + + G +
Sbjct: 69 SKKDAGIYEVILKDDRGKDKSR-LKLVDEAFKELMMEVCKKIALSATDLKIQSTAEGIQL 127
Query: 129 L----------TVHWKRLGSAM-PEDRMSVLPS---RSLQLSDVRLEDAGEYVCEAENAV 174
V+W GSA+ DR+ + LQ+++ D G+YV E +
Sbjct: 128 YSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGK 187
Query: 175 GKISASATLTVQ---------------------MAPIVRERPSDLRLEVGRDAVFLCGIE 213
+ L+ Q A ++ P + ++ G+ C +
Sbjct: 188 TGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVW 247
Query: 214 GSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSR------TAAPLIIL 267
G PPP W+ + D + + I VS
Sbjct: 248 GDPPPEVSWLKNEKA--LASDDH---CNLKFEAGRTAYFTINGVSTADSGKYG------- 295
Query: 268 CLGVNAAGSDLARASLTVSGPD 289
+ N GS+ + +++V P+
Sbjct: 296 LVVKNKYGSETSDFTVSVFIPE 317
Score = 108 bits (272), Expect = 5e-26
Identities = 36/244 (14%), Positives = 64/244 (26%), Gaps = 26/244 (10%)
Query: 183 LTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTF-WMLEGNRSLIYPGDRVDNIQ 241
+ P E S + + + C + + W + I ++ D
Sbjct: 2 IDPFTGPHFVEYLSW-EVTGECNVLLKCKVANIKKETHIVWYKDER--EISVDEKHD--- 55
Query: 242 AEITSDGMNLLKIQNVSRT-AAPLIILCLGVNAAGSDLARASLTVSGPDP---NPPPVIL 297
DG+ L I S+ A I + + G D +R L I
Sbjct: 56 ---FKDGICTLLITEFSKKDAG--IYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIA 110
Query: 298 FGPANQTLPLRSEA-RLRCQVRGEG---SVQWWRGEREVGSGPRVNVTGDG---SLVLTD 350
+ + +E +L V V W + RV G L + +
Sbjct: 111 LSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINE 170
Query: 351 VTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPST---YPGPPTKPTLV 407
T D G+Y + + L ++ F R + +
Sbjct: 171 PTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPD 230
Query: 408 NQTA 411
T
Sbjct: 231 VVTI 234
Score = 72.6 bits (178), Expect = 9e-14
Identities = 29/154 (18%), Positives = 53/154 (34%), Gaps = 24/154 (15%)
Query: 287 GPDPNPPPVILFGPANQTLPLRSEARLRCQVRGEG---SVQWWRGEREVGSGPRVNVTGD 343
G DP P + + + L+C+V + W++ ERE+ + +
Sbjct: 1 GIDPFTGPHFVEYLSWEVTG-ECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDG 59
Query: 344 G-SLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPT 402
+L++T+ +K+D+G Y ++K G L E+ + E
Sbjct: 60 ICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAF--KEL----MMEVCKKIALSA 113
Query: 403 KPTLVNQTANGLTLA-------------WSRNNQ 423
+ TA G+ L WS N
Sbjct: 114 TDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGS 147
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 178 bits (453), Expect = 2e-51
Identities = 48/194 (24%), Positives = 75/194 (38%), Gaps = 11/194 (5%)
Query: 4 LREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLV-WKKNGHPIDFE-NSKRLRLVDGT 61
L + RV G +L C PP P+ W N P+ + +R
Sbjct: 7 LDPFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNG 66
Query: 62 NLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVK---------PYIIRGPKDTTVS 112
NL I + +D G Y C V + + T+ + ++ I+ KD
Sbjct: 67 NLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYAL 126
Query: 113 ASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAEN 172
+ EC G+ V + W+++ MP L++ +++LED G Y CEAEN
Sbjct: 127 MGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSGAVLKIFNIQLEDEGIYECEAEN 186
Query: 173 AVGKISASATLTVQ 186
GK A + VQ
Sbjct: 187 IRGKDKHQARIYVQ 200
Score = 106 bits (266), Expect = 2e-26
Identities = 34/210 (16%), Positives = 62/210 (29%), Gaps = 39/210 (18%)
Query: 98 VKPYIIRGPKDTTVSASSIIVFECSV--GGDAVLTVHWKR----LGSAMPEDRMSVLPSR 151
+ P+ + V +V C L+ W + M + R +
Sbjct: 7 LDPFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNG 66
Query: 152 SLQLSDVRLEDAGEYVCEAENAVGKISASATLTV----------QMAPIVRERPSDLRLE 201
+L +++V D G Y C + S + + + D+
Sbjct: 67 NLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYAL 126
Query: 202 VGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSR-- 259
+G++ C G+P P W + I++ G +LKI N+
Sbjct: 127 MGQNVTLECFALGNPVPDIRWRKVL--EPMPSTAE-------ISTSG-AVLKIFNIQLED 176
Query: 260 ----TAAPLIILCLGVNAAGSDLARASLTV 285
C N G D +A + V
Sbjct: 177 EGIYE-------CEAENIRGKDKHQARIYV 199
Score = 104 bits (260), Expect = 1e-25
Identities = 37/209 (17%), Positives = 67/209 (32%), Gaps = 29/209 (13%)
Query: 187 MAPIVRERPSDLRLEVGRDAVFLCGIEGSPPP--STFWMLEGNRSLIYPGDRVDNIQAEI 244
+ P E ++R++ G+ V LC P S W+L I R
Sbjct: 7 LDPFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRR------F 60
Query: 245 TSDGMNLLKIQNVSR------TAAPLIILCLGVNAAGSDLARASLTVSGPDPN-----PP 293
S L I NV + C + + + + P P P
Sbjct: 61 VSQTNGNLYIANVEASDKGNYS-------CFVSSPSITKSVFSKFIPLIPIPERTTKPYP 113
Query: 294 PVILFGPANQTLPLRSEARLRCQVRG--EGSVQWWRGEREVGSGPRVNVTGDGSLVLTDV 351
I+ + + L C G ++W + + S ++ +G L + ++
Sbjct: 114 ADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSG-AVLKIFNI 172
Query: 352 TKEDSGEYTCVVKSPHGSASWSASLRFES 380
ED G Y C ++ G A + ++
Sbjct: 173 QLEDEGIYECEAENIRGKDKHQARIYVQA 201
Score = 64.9 bits (158), Expect = 6e-12
Identities = 25/147 (17%), Positives = 40/147 (27%), Gaps = 18/147 (12%)
Query: 293 PPVILFGPANQTLPLRSEARLRCQVRG----EGSVQWWRGEREV---GSGPRVNVTGDGS 345
P + L C + S +W E V R +G+
Sbjct: 8 DPFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGN 67
Query: 346 LVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPT 405
L + +V D G Y+C V SP + S + P +
Sbjct: 68 LYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERT--TKPYPADIVVQFKDVYA 125
Query: 406 LVNQT------ANGL---TLAWSRNNQ 423
L+ Q A G + W + +
Sbjct: 126 LMGQNVTLECFALGNPVPDIRWRKVLE 152
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein
complex, receptor tyrosine kinas binding, immunoglobulin
domain, kinase, membrane, nucleotid binding; HET: NAG;
2.10A {Homo sapiens}
Length = 241
Score = 178 bits (454), Expect = 5e-51
Identities = 57/226 (25%), Positives = 84/226 (37%), Gaps = 29/226 (12%)
Query: 9 RVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV--DGTNLAIQ 66
R+ K V A +T C P G+P P++ W KNG E+ + +L ++
Sbjct: 19 RMDKKLLAVPAANTVRFRC-PAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVME 77
Query: 67 DSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVK-----PYIIRGPKDTTVSASSIIVFEC 121
+D G Y CVV+N G+ T L VL + P + T S + F C
Sbjct: 78 SVVPSDRGNYTCVVENKFGSIRQT-YTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHC 136
Query: 122 SVGGDAVLTVHWKR----LGSAMPED------------RMSVLPSRSLQLSDVRLEDAGE 165
V DA + W + GS + D SV L+L++V D GE
Sbjct: 137 KVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGE 196
Query: 166 YVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCG 211
Y+C A N +G + L+V E +E
Sbjct: 197 YLCRATNFIGVAEKAFWLSVHGPRAAEEEL----VEADEAGSVHHH 238
Score = 132 bits (334), Expect = 6e-35
Identities = 54/246 (21%), Positives = 78/246 (31%), Gaps = 40/246 (16%)
Query: 179 ASATLTVQMAP-----IVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYP 233
A V R L + F C G+P PS W+ G
Sbjct: 1 ADPDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGRE--FRG 58
Query: 234 GDRVDNIQAEITSDGMNLLKIQNVSR------TAAPLIILCLGVNAAGSDLARASLTVSG 287
R+ I+ L +++V T C+ N GS +L V
Sbjct: 59 EHRIGGIKLR---HQQWSLVMESVVPSDRGNYT-------CVVENKFGSIRQTYTLDVLE 108
Query: 288 PDPNPPPVILFGPANQTLPLRSEARLRCQVRG--EGSVQWWRGEREVGS----------- 334
P+ P + PANQT L S+ C+V + +QW + GS
Sbjct: 109 RSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVT 168
Query: 335 ----GPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFR 390
+V D L L +V++ D GEY C + G A + L P
Sbjct: 169 VLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPRAAEEELVE 228
Query: 391 APEPST 396
A E +
Sbjct: 229 ADEAGS 234
Score = 71.9 bits (176), Expect = 5e-14
Identities = 18/120 (15%), Positives = 30/120 (25%), Gaps = 15/120 (12%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPI-------------DFENSKR 54
P +Q G C +P + W K+ ++
Sbjct: 117 QAGLPANQTAVLGSDVEFHC-KVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWIS 175
Query: 55 LRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAS 114
+ L + + + D G Y C N G E L V + + S
Sbjct: 176 ESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKA-FWLSVHGPRAAEEELVEADEAGS 234
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor
receptor, extracellular; 2.10A {Homo sapiens} PDB:
1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E
1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Length = 231
Score = 176 bits (448), Expect = 2e-50
Identities = 51/214 (23%), Positives = 83/214 (38%), Gaps = 24/214 (11%)
Query: 6 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV--DGTNL 63
+++ + V A +T C P G+P PT+ W KNG E+ V +L
Sbjct: 20 NTEKMEKRLHAVPAANTVKFRC-PAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSL 78
Query: 64 AIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVK-----PYIIRGPKDTTVSASSIIV 118
++ +D G Y CVV+N G+ T L V+ + P + + +
Sbjct: 79 IMESVVPSDKGNYTCVVENEYGSINHT-YHLDVVERSRHRPILQAGLPANASTVVGGDVE 137
Query: 119 FECSVGGDAVLTVHWKRLGSA---------------MPEDRMSVLPSRSLQLSDVRLEDA 163
F C V DA + W + + ++ + L L +V DA
Sbjct: 138 FVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADA 197
Query: 164 GEYVCEAENAVGKISASATLTVQMAPIVRERPSD 197
GEY+C+ N +G+ + SA LTV R +
Sbjct: 198 GEYICKVSNYIGQANQSAWLTVLPKQQAPGREKE 231
Score = 133 bits (335), Expect = 3e-35
Identities = 48/238 (20%), Positives = 80/238 (33%), Gaps = 36/238 (15%)
Query: 170 AENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRS 229
AE+ V + S + + + F C G+P P+ W+ G
Sbjct: 2 AEDFVSENSNNKRAPYWTNTE-KMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKE- 59
Query: 230 LIYPGDRVDNIQAEITSDGMNLLKIQNVSR------TAAPLIILCLGVNAAGSDLARASL 283
R+ + + L +++V T C+ N GS L
Sbjct: 60 -FKQEHRIGGYKVR---NQHWSLIMESVVPSDKGNYT-------CVVENEYGSINHTYHL 108
Query: 284 TVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG--EGSVQWWRGEREVGSGP----- 336
V + P + PAN + + + C+V + +QW + + GS
Sbjct: 109 DVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGL 168
Query: 337 ---------RVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLR-FESPTNP 384
+N + L L +VT+ D+GEY C V + G A+ SA L P
Sbjct: 169 PYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQAP 226
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold,
glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4
b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 173 bits (440), Expect = 9e-50
Identities = 37/187 (19%), Positives = 63/187 (33%), Gaps = 7/187 (3%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVW-KKNGHPIDFENSKRLRLV---DGTN 62
+ + P ++ G++ C + + W NG + + + D +
Sbjct: 4 QVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSST 63
Query: 63 LAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECS 122
L I ++ D G Y+CVV GT+ +++ K P V C
Sbjct: 64 LTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCD 123
Query: 123 VGGDAVLTVHWKRLGSAMPE---DRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISA 179
V T+ WK G + R VL + LQ+ ++ D G Y CE
Sbjct: 124 VVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEIN 183
Query: 180 SATLTVQ 186
+ V
Sbjct: 184 FKDIQVI 190
Score = 136 bits (344), Expect = 7e-37
Identities = 40/201 (19%), Positives = 74/201 (36%), Gaps = 29/201 (14%)
Query: 100 PYIIRGPKDTTVSASSIIVFECSVGGDAVL-TVHWKRLGS---AMPEDRMSVLP----SR 151
+ P +S F C V GDA + W + + R+SV+ S
Sbjct: 3 LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 62
Query: 152 SLQLSDVRLEDAGEYVCEAENAVGKI-SASATLTVQMAPIVRERPSDLRLEVGRDAVFLC 210
+L + + ++DAG Y C G A+ + + + + P+ + G DAV +C
Sbjct: 63 TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVC 122
Query: 211 GIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSR------TAAPL 264
+ S PP+ W +G ++ R + S+ L+I+ + +
Sbjct: 123 DVVSSLPPTIIWKHKGRDVILKKDVRF-----IVLSNNY--LQIRGIKKTDEGTYR---- 171
Query: 265 IILCLGVNAAGSDLARASLTV 285
C G A ++ + V
Sbjct: 172 ---CEGRILARGEINFKDIQV 189
Score = 115 bits (290), Expect = 1e-29
Identities = 38/196 (19%), Positives = 59/196 (30%), Gaps = 17/196 (8%)
Query: 189 PIVRERPSDLRLEVGRDAVFLCGIEGSPP-PSTFWMLEGNRSLIYPGDRVDNIQAEITSD 247
V PS + VG FLC + G W L R I D
Sbjct: 3 LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQR---ISVVWNDD 59
Query: 248 GMNLLKIQNVSRT-AAPLIILCLGVNAAGSDL-ARASLTVSGPDPNPPPVILFGPANQTL 305
+ L I N + A I C+ G+ A ++ + + P Q
Sbjct: 60 DSSTLTIYNANIDDAG--IYKCVVTAEDGTQSEATVNVKI-----FQKLMFKNAPTPQEF 112
Query: 306 PLRSEARLRCQVRGE--GSVQWWRGEREV--GSGPRVNVTGDGSLVLTDVTKEDSGEYTC 361
+A + C V ++ W R+V R V + L + + K D G Y C
Sbjct: 113 KEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRC 172
Query: 362 VVKSPHGSASWSASLR 377
+ ++
Sbjct: 173 EGRILARGEINFKDIQ 188
Score = 66.0 bits (161), Expect = 2e-12
Identities = 23/115 (20%), Positives = 46/115 (40%), Gaps = 16/115 (13%)
Query: 293 PPVILFGPANQTLPLRSEARLRCQVRGEG---SVQWWR--GEREVGSGPRVNVT----GD 343
+ P+ + + CQV G+ + W+ GE+ + R++V
Sbjct: 2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDS 61
Query: 344 GSLVLTDVTKEDSGEYTCVVKSPHGSA-SWSASLR-FESPTNPNIGFFRAPEPST 396
+L + + +D+G Y CVV + G+ + +++ F+ F AP P
Sbjct: 62 STLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLM-----FKNAPTPQE 111
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 173 bits (439), Expect = 9e-50
Identities = 32/185 (17%), Positives = 61/185 (32%), Gaps = 9/185 (4%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV---DGTNL 63
+ + ++ G++ C G PE + G I +++R+ + + L
Sbjct: 4 QVTISLSKVELSVGESKFFTC-TAIGEPESIDWYNPQGEKI--ISTQRVVVQKEGVRSRL 60
Query: 64 AIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSV 123
I ++ D G Y+C + G + VL + K C V
Sbjct: 61 TIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRV 120
Query: 124 GGDAVLTVHWKRLGSAMPE---DRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISAS 180
V W + +R ++L + +LQ+ ++ D G Y CE
Sbjct: 121 SSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDF 180
Query: 181 ATLTV 185
+ V
Sbjct: 181 RDIIV 185
Score = 136 bits (345), Expect = 5e-37
Identities = 38/197 (19%), Positives = 69/197 (35%), Gaps = 25/197 (12%)
Query: 100 PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED-RMSVLPS---RSLQL 155
+ +S F C+ G+ + G + R+ V L +
Sbjct: 3 LQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLTI 62
Query: 156 SDVRLEDAGEYVCEAENAVGKI-SASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEG 214
+ +EDAG Y C+A +A G+ A+ L + RE S + G DA +C +
Sbjct: 63 YNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSS 122
Query: 215 SPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSR------TAAPLIILC 268
SP P+ W+ +R + ++ L+I N+++ C
Sbjct: 123 SPAPAVSWLYHNEEVTTISDNRF-----AMLANNN--LQILNINKSDEGIYR-------C 168
Query: 269 LGVNAAGSDLARASLTV 285
G A ++ + V
Sbjct: 169 EGRVEARGEIDFRDIIV 185
Score = 115 bits (289), Expect = 2e-29
Identities = 40/196 (20%), Positives = 64/196 (32%), Gaps = 21/196 (10%)
Query: 188 APIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSD 247
V S + L VG F C G P ++ +G + I RV + +
Sbjct: 2 LLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEK--IISTQRV-----VVQKE 54
Query: 248 GMNL-LKIQNVSRT-AAPLIILCLGVNAAGSDL-ARASLTVSGPDPNPPPVILFGPANQT 304
G+ L I N + A I C +A G A L + + Q
Sbjct: 55 GVRSRLTIYNANIEDAG--IYRCQATDAKGQTQEATVVLEI-----YQKLTFREVVSPQE 107
Query: 305 LPLRSEARLRCQVRG--EGSVQWWRGEREV--GSGPRVNVTGDGSLVLTDVTKEDSGEYT 360
+A + C+V +V W EV S R + + +L + ++ K D G Y
Sbjct: 108 FKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYR 167
Query: 361 CVVKSPHGSASWSASL 376
C + +
Sbjct: 168 CEGRVEARGEIDFRDI 183
Score = 94.8 bits (236), Expect = 2e-22
Identities = 22/93 (23%), Positives = 37/93 (39%), Gaps = 2/93 (2%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQ 66
FR Q G+ A + C P P + W + + + R ++ NL I
Sbjct: 98 TFREVVSPQEFKQGEDAEVVC-RVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQIL 156
Query: 67 DSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVK 99
+ K+D+G Y+C + A E + V+V
Sbjct: 157 NINKSDEGIYRCEGRVEARG-EIDFRDIIVIVN 188
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane,
phosphorylation, immunoglobulin domain, membrane,
glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Length = 192
Score = 171 bits (434), Expect = 6e-49
Identities = 53/191 (27%), Positives = 83/191 (43%), Gaps = 15/191 (7%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQ 66
+ + G+ C G PEP + W +NG I+ EN K + T L ++
Sbjct: 6 SMPQKSFNATAERGEEMTFSC-RASGSPEPAISWFRNGKLIE-ENEKYILKGSNTELTVR 63
Query: 67 DSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGD 126
+ +D G Y C N AG E A L+V V+P+II+ K+ T + + C G+
Sbjct: 64 NIINSDGGPYVCRATNKAGEDEKQ-AFLQVFVQPHIIQ-LKNETTYENGQVTLVCDAEGE 121
Query: 127 AVLTVHWKRLGSAMP--------EDRMSVLPSR---SLQLSDVRLEDAGEYVCEAENAVG 175
+ + WKR + R+ V SL + DV+L D+G Y CEA + +G
Sbjct: 122 PIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIG 181
Query: 176 KISASATLTVQ 186
S L ++
Sbjct: 182 GHQKSMYLDIE 192
Score = 136 bits (343), Expect = 1e-36
Identities = 40/197 (20%), Positives = 68/197 (34%), Gaps = 19/197 (9%)
Query: 100 PYII--RGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED-RMSVLPS-RSLQL 155
P I + + T + F C G + W R G + E+ + + S L +
Sbjct: 3 PAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTV 62
Query: 156 SDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGS 215
++ D G YVC A N G+ A L V + P + + ++ E +C EG
Sbjct: 63 RNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQPHIIQLKNETTYE-NGQVTLVCDAEGE 121
Query: 216 PPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMN-LLKIQNVSR------TAAPLIILC 268
P P W + GD+ + + E+ + L I++V C
Sbjct: 122 PIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYD-------C 174
Query: 269 LGVNAAGSDLARASLTV 285
+ G L +
Sbjct: 175 EAASRIGGHQKSMYLDI 191
Score = 111 bits (279), Expect = 4e-28
Identities = 51/202 (25%), Positives = 72/202 (35%), Gaps = 29/202 (14%)
Query: 188 APIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSD 247
A + ++ + E G + F C GSP P+ W G LI ++ I
Sbjct: 4 AISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGK--LIEENEKY------ILKG 55
Query: 248 GMNLLKIQNVSRT-AAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLP 306
L ++N+ + +C N AG D +A L V P I+ N+T
Sbjct: 56 SNTELTVRNIINSDGG--PYVCRATNKAGEDEKQAFLQVFVQ-----PHII-QLKNETTY 107
Query: 307 LRSEARLRCQVRGE--GSVQWWRG-------EREVGSGPRVNVT---GDGSLVLTDVTKE 354
+ L C GE + W R E + R+ V G SL + DV
Sbjct: 108 ENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLS 167
Query: 355 DSGEYTCVVKSPHGSASWSASL 376
DSG Y C S G S L
Sbjct: 168 DSGRYDCEAASRIGGHQKSMYL 189
Score = 76.8 bits (189), Expect = 4e-16
Identities = 20/98 (20%), Positives = 35/98 (35%), Gaps = 5/98 (5%)
Query: 292 PPPVILFGPANQTLPLRSEARLRCQVRG--EGSVQWWRGEREVGSGPRVNVTGD-GSLVL 348
P + N T E C+ G E ++ W+R + + + + G L +
Sbjct: 3 PAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTV 62
Query: 349 TDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNI 386
++ D G Y C + G A L+ P+I
Sbjct: 63 RNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQ--PHI 98
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 171 bits (434), Expect = 6e-49
Identities = 45/190 (23%), Positives = 74/190 (38%), Gaps = 15/190 (7%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG------- 60
F P + A G T L C P + W ++G ++ +S + ++ G
Sbjct: 5 FVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDW 64
Query: 61 ---TNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSII 117
+ L I + +D G+YQC+V T S + + PY + P+D TV+A++
Sbjct: 65 IVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAANTPF 124
Query: 118 VFECSVGGD-AVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGK 176
C G + + W + + L L + CEA NA G
Sbjct: 125 NLSCQAQGPPEPVDLLWLQDAVPLATAPGH---GPQRSLHVPGLNKTSSFSCEAHNAKGV 181
Query: 177 I-SASATLTV 185
S +AT+TV
Sbjct: 182 TTSRTATITV 191
Score = 110 bits (276), Expect = 1e-27
Identities = 34/205 (16%), Positives = 63/205 (30%), Gaps = 30/205 (14%)
Query: 100 PYIIRGPKDTTVSASSIIVFECSVGGDAV-LTVHWKRLGSAMP-------------EDRM 145
+ P + T + C + VHW R G + +++
Sbjct: 3 SPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQD 62
Query: 146 SVLPSRSLQLSDVRLEDAGEYVCEAENAVGKI-SASATLTVQMAPIVRERPSDLRLEVGR 204
+ L+++ ++L D G+Y C S + ++ P E P D +
Sbjct: 63 DWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAANT 122
Query: 205 DAVFLCGIEGSPPPST-FWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAP 263
C +G P P W+ + PG L + +++T+
Sbjct: 123 PFNLSCQAQGPPEPVDLLWLQDAVPLATAPGHGPQRS-----------LHVPGLNKTS-- 169
Query: 264 LIILCLGVNAAGSDLARASLTVSGP 288
C NA G +R + P
Sbjct: 170 -SFSCEAHNAKGVTTSRTATITVLP 193
Score = 93.8 bits (233), Expect = 6e-22
Identities = 29/199 (14%), Positives = 65/199 (32%), Gaps = 19/199 (9%)
Query: 186 QMAPIVRERPSDLRLEVGRDAVFLCGIE-GSPPPSTFWMLEGNRSLIYPGDRVDNIQAEI 244
+ +P V P ++ G C ++ PP W+ +G + + E
Sbjct: 1 EESPFVGN-PGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGED 59
Query: 245 TSDGMNL---LKIQNVSRTAAPLIILCLGVNAAGSDLAR-ASLTVSGPDPNPPPVILFGP 300
D + L+I ++ + CL + +++ + + G P L P
Sbjct: 60 EQDDWIVVSQLRITSLQLSDTGQYQ-CLVFLGHQTFVSQPGYVGLEGL-----PYFLEEP 113
Query: 301 ANQTLPLRSEARLRCQVRGE---GSVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSG 357
++T+ + L CQ +G + W + + + P L +
Sbjct: 114 EDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGH----GPQRSLHVPGLNKTS 169
Query: 358 EYTCVVKSPHGSASWSASL 376
++C + G + +
Sbjct: 170 SFSCEAHNAKGVTTSRTAT 188
Score = 78.8 bits (194), Expect = 8e-17
Identities = 21/91 (23%), Positives = 33/91 (36%), Gaps = 8/91 (8%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLV-WKKNGHPIDFENSKRLRLVDGTNLAIQ 66
F +P+ + VAA L C +G PEP + W ++ P+ G ++
Sbjct: 109 FLEEPEDRTVAANTPFNLSC-QAQGPPEPVDLLWLQDAVPLATAPG------HGPQRSLH 161
Query: 67 DSRKTDDGRYQCVVKNVAGTRESTDAVLRVL 97
+ C N G S A + VL
Sbjct: 162 VPGLNKTSSFSCEAHNAKGVTTSRTATITVL 192
Score = 63.0 bits (153), Expect = 2e-11
Identities = 34/163 (20%), Positives = 55/163 (33%), Gaps = 33/163 (20%)
Query: 293 PPVILFGPANQTLPLRSEARLRCQVRGEG---SVQWWRGEREV------------GSGPR 337
+ P N T LRCQ++ +G V W R + + G +
Sbjct: 2 ESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQ 61
Query: 338 VNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSA-SWSASLRFESPTNPNIGFFRAPEPST 396
+ L +T + D+G+Y C+V H + S + E P F PE T
Sbjct: 62 DDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGL--PY--FLEEPEDRT 117
Query: 397 YP------------GPPTKPTLVNQTANGLTLAWSRNNQIGSS 427
GPP +P + + + LA + + S
Sbjct: 118 VAANTPFNLSCQAQGPP-EPVDLLWLQDAVPLATAPGHGPQRS 159
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 171 bits (434), Expect = 1e-48
Identities = 54/204 (26%), Positives = 88/204 (43%), Gaps = 14/204 (6%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQ 66
E +P++Q V G A C RG P P++VW+KNG + S+ L ++I
Sbjct: 8 EIIRKPQNQGVRVGGVASFYC-AARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISIL 66
Query: 67 D----SRKTDDGRYQCVVKNVAGTRESTDAVLRVLVK-------PYIIRGPKDTTVSASS 115
DD Y+CV +N G S DA L + P I +GP +
Sbjct: 67 RIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGH 126
Query: 116 IIVFECSVGGDAVLTVHWKRLGSAMPE-DRMSVLPSRSLQLSDVRLEDAGEYVCEAENAV 174
++ C G+ ++W + + + + L LQ+ + R ED G+Y C AEN++
Sbjct: 127 TVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGFLQIENSREEDQGKYECVAENSM 186
Query: 175 GKISASAT-LTVQMAPIVRERPSD 197
G + AT L V++ + +
Sbjct: 187 GTEHSKATNLYVKVRRVGTKHHHH 210
Score = 131 bits (330), Expect = 1e-34
Identities = 50/207 (24%), Positives = 85/207 (41%), Gaps = 10/207 (4%)
Query: 184 TVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAE 243
T P + +P + + VG A F C G PPPS W G + + R
Sbjct: 2 TGAHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNG-KKVSGTQSR---YTVL 57
Query: 244 ITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDL-ARASLTVSGPDPNP--PPVILFGP 300
G+++L+I+ V C+ N G + A A+LT+ D P PVI GP
Sbjct: 58 EQPGGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGP 117
Query: 301 ANQTLPLRSEARLRCQVRG--EGSVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGE 358
+ + + + C+ G ++ W + + +V DG L + + +ED G+
Sbjct: 118 GTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGFLQIENSREEDQGK 177
Query: 359 YTCVVKSPHGSA-SWSASLRFESPTNP 384
Y CV ++ G+ S + +L +
Sbjct: 178 YECVAENSMGTEHSKATNLYVKVRRVG 204
Score = 126 bits (318), Expect = 4e-33
Identities = 52/230 (22%), Positives = 91/230 (39%), Gaps = 43/230 (18%)
Query: 96 VLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGS--AMPEDRMSVLPSR-S 152
P IIR P++ V + F C+ GD ++ W++ G + + R +VL
Sbjct: 3 GAHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGG 62
Query: 153 LQLSDV----RLEDAGEYVCEAENAVGK-ISASATLTVQM-------APIVRERPSDLRL 200
+ + + D Y C AEN VG +SA ATLT+ P++ + P +
Sbjct: 63 ISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVI 122
Query: 201 EVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSR- 259
EVG + C G+P P+ +W+ N++ + + DG L+I+N
Sbjct: 123 EVGHTVLMTCKAIGNPTPNIYWIK--NQTKVDMSNPR-----YSLKDG--FLQIENSREE 173
Query: 260 -----TAAPLIILCLGVNAAGSDLARAS-LTVSGPDPNPPPVILFGPANQ 303
C+ N+ G++ ++A+ L V V +
Sbjct: 174 DQGKYE-------CVAENSMGTEHSKATNLYV-----KVRRVGTKHHHHH 211
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 167 bits (424), Expect = 1e-47
Identities = 46/184 (25%), Positives = 74/184 (40%), Gaps = 6/184 (3%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQD 67
FR Q G+ A + C P P + W + + + R ++ NL I +
Sbjct: 5 FREVVSPQEFKQGEDAEVVC-RVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILN 63
Query: 68 SRKTDDGRYQCVVKNVA-GTRESTDAVLRVLVKPYII--RGPKDTTVSASSIIVFECSVG 124
K+D+G Y+C + A G + D ++ V V P I + + T + F C
Sbjct: 64 INKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRAS 123
Query: 125 GDAVLTVHWKRLGSAMPE-DRMSVLPS-RSLQLSDVRLEDAGEYVCEAENAVGKISASAT 182
G + W R G + E ++ + S L + ++ D G YVC A N G+ A
Sbjct: 124 GSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAF 183
Query: 183 LTVQ 186
L V
Sbjct: 184 LQVF 187
Score = 127 bits (322), Expect = 6e-34
Identities = 40/193 (20%), Positives = 68/193 (35%), Gaps = 16/193 (8%)
Query: 100 PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLG---SAMPEDRMSVLPSRSLQLS 156
C V V W + + ++R ++L + +LQ+
Sbjct: 3 LTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQIL 62
Query: 157 DVRLEDAGEYVCEAEN-AVGKISASATLTVQMAP---IVRERPSDLRLEVGRDAVFLCGI 212
++ D G Y CE A G+I + + P + ++ + E G + F C
Sbjct: 63 NINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRA 122
Query: 213 EGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVN 272
GSP P+ W G LI ++ I L ++N+ + + C N
Sbjct: 123 SGSPEPAISWFRNGK--LIEENEKY------ILKGSNTELTVRNIINSDGGPYV-CRATN 173
Query: 273 AAGSDLARASLTV 285
AG D +A L V
Sbjct: 174 KAGEDEKQAFLQV 186
Score = 126 bits (318), Expect = 2e-33
Identities = 39/194 (20%), Positives = 70/194 (36%), Gaps = 14/194 (7%)
Query: 188 APIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSD 247
RE S + G DA +C + SP P+ W+ +R + ++
Sbjct: 2 MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRF-----AMLAN 56
Query: 248 GMNLLKIQNVSRT-AAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLP 306
L+I N++++ I C G A ++ + V P P + N T
Sbjct: 57 NN--LQILNINKSDEG--IYRCEGRVEARGEIDFRDIIVIVNVP-PAISMPQKSFNATAE 111
Query: 307 LRSEARLRCQVRG--EGSVQWWRGEREVGSGPRVNVTGD-GSLVLTDVTKEDSGEYTCVV 363
E C+ G E ++ W+R + + + + G L + ++ D G Y C
Sbjct: 112 RGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRA 171
Query: 364 KSPHGSASWSASLR 377
+ G A L+
Sbjct: 172 TNKAGEDEKQAFLQ 185
Score = 66.7 bits (163), Expect = 1e-12
Identities = 18/105 (17%), Positives = 32/105 (30%), Gaps = 4/105 (3%)
Query: 293 PPVILFGPANQTLPLRSEARLRCQVRG--EGSVQWWRGEREV--GSGPRVNVTGDGSLVL 348
+ Q +A + C+V +V W EV S R + + +L +
Sbjct: 2 MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQI 61
Query: 349 TDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPE 393
++ K D G Y C + + P I +
Sbjct: 62 LNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSF 106
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A
2f8v_A
Length = 194
Score = 166 bits (421), Expect = 3e-47
Identities = 49/190 (25%), Positives = 76/190 (40%), Gaps = 12/190 (6%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV---DGTNL 63
F +S V G TA E G P P + W ++G I +++ L
Sbjct: 7 TFTQPLQSVVVLEGSTATFEA-HISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKL 65
Query: 64 AIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRV---LVKPYIIRGPKDTTVSASSIIVFE 120
I K + GRY N +G ST A L V P ++ + TV S + +
Sbjct: 66 TIPAVTKANSGRYSLKATNGSGQATST-AELLVKAETAPPNFVQRLQSMTVRQGSQVRLQ 124
Query: 121 CSVGGDAVLTVHWKRLGSAMPED-RMSVLPS---RSLQLSDVRLEDAGEYVCEAENAVGK 176
V G V + R G+ + + SL +++ ED+G Y A N+VG+
Sbjct: 125 VRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGR 184
Query: 177 ISASATLTVQ 186
+++A L VQ
Sbjct: 185 ATSTAELLVQ 194
Score = 137 bits (346), Expect = 5e-37
Identities = 42/202 (20%), Positives = 71/202 (35%), Gaps = 30/202 (14%)
Query: 100 PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLG-----SAMPEDRMSVLPSR-SL 153
P + + V S FE + G V V W R G S +P ++S R L
Sbjct: 6 PTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKL 65
Query: 154 QLSDVRLEDAGEYVCEAENAVGKISASATLTVQM---APIVRERPSDLRLEVGRDAVFLC 210
+ V ++G Y +A N G+ +++A L V+ P +R + + G
Sbjct: 66 TIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQV 125
Query: 211 GIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDG-MNLLKIQNVSR------TAAP 263
+ G P P + +G + I +I+ +G + L I +
Sbjct: 126 RVTGIPTPVVKFYRDG--AEIQSSLDF-----QISQEGDLYSLLIAEAYPEDSGTYS--- 175
Query: 264 LIILCLGVNAAGSDLARASLTV 285
N+ G + A L V
Sbjct: 176 ----VNATNSVGRATSTAELLV 193
Score = 136 bits (345), Expect = 7e-37
Identities = 49/200 (24%), Positives = 80/200 (40%), Gaps = 15/200 (7%)
Query: 183 LTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQA 242
+T Q AP + + + G A F I G P P W +G +I
Sbjct: 1 MTTQ-APTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQ--VISTSTLPGVQI- 56
Query: 243 EITSDGMNLLKIQNVSRT-AAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPA 301
SDG L I V++ + N +G + A L V PP +
Sbjct: 57 -SFSDGRAKLTIPAVTKANSG--RYSLKATNGSGQATSTAELLVK--AETAPPNFVQRLQ 111
Query: 302 NQTLPLRSEARLRCQVRG--EGSVQWWRGEREVGSGPRVNVTGDG---SLVLTDVTKEDS 356
+ T+ S+ RL+ +V G V+++R E+ S ++ +G SL++ + EDS
Sbjct: 112 SMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDS 171
Query: 357 GEYTCVVKSPHGSASWSASL 376
G Y+ + G A+ +A L
Sbjct: 172 GTYSVNATNSVGRATSTAEL 191
Score = 74.4 bits (183), Expect = 3e-15
Identities = 22/99 (22%), Positives = 37/99 (37%), Gaps = 7/99 (7%)
Query: 293 PPVILFGPANQTLPLRSEARLRCQVRG--EGSVQWWRGEREVGSGPRVNVT-----GDGS 345
P + + S A + G V W+R + + + V G
Sbjct: 5 APTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAK 64
Query: 346 LVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNP 384
L + VTK +SG Y+ + G A+ +A L ++ T P
Sbjct: 65 LTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAP 103
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 168 bits (428), Expect = 6e-47
Identities = 51/296 (17%), Positives = 86/296 (29%), Gaps = 29/296 (9%)
Query: 99 KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDV 158
P I + V + C G +V W S P +L +
Sbjct: 4 APVIEPSGPELVVEPGETVTLRCVSNG----SVEWDGPISPYWTLDPES-PGSTLTTRNA 58
Query: 159 RLEDAGEYVCEAENAVGKISASATLTVQMAP-IVRERPSDLRLEVGRDAVFLCGIEGSPP 217
++ G Y C S + L V+ ++ + G++AV C I
Sbjct: 59 TFKNTGTYRCTELEDPMAGSTTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPAL 118
Query: 218 PST-FWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRT-AAPLIILCLG-VNAA 274
+ M EG R ++ I+ + + C VN
Sbjct: 119 KDSVSLMREGGRQVLRKTV--------YFFSPWRGFIIRKAKVLDSNTYV--CKTMVNGR 168
Query: 275 GSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRGE--GSVQWWRGEREV 332
S L V+ PP I P+ A++ C G +
Sbjct: 169 ESTSTGIWLKVN-RVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTK 227
Query: 333 GSGP------RVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLR-FESP 381
P +L L V +D+G Y+CV + G+ + + + + ES
Sbjct: 228 LEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVESH 283
Score = 164 bits (417), Expect = 2e-45
Identities = 49/288 (17%), Positives = 84/288 (29%), Gaps = 23/288 (7%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQ 66
V G+T L C ++ W P + + G+ L +
Sbjct: 6 VIEPSGPELVVEPGETVTLRC-----VSNGSVEWDGPISPYWTLDPES----PGSTLTTR 56
Query: 67 DSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYI-IRGPKDTTVSASSIIVFECSV-G 124
++ + G Y+C +T L V + ++ TV V C +
Sbjct: 57 NATFKNTGTYRCTELEDPMAGSTT-IHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITD 115
Query: 125 GDAVLTVHWKRLGSAMPED--RMSVLPSRSLQLSDVRLEDAGEYVCEAEN-AVGKISASA 181
+V R G P R + ++ D+ YVC+ S
Sbjct: 116 PALKDSVSLMREGGRQVLRKTVYFFSPWRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGI 175
Query: 182 TLTVQM----APIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRV 237
L V P ++ PS L G A +C + + G+ L P +
Sbjct: 176 WLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSD 235
Query: 238 DNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTV 285
+ L + V A + C+ N G+ A + V
Sbjct: 236 FQDN---YYKKVRALSLNAVDFQDAGIYS-CVASNDVGTRTATMNFQV 279
Score = 148 bits (374), Expect = 8e-40
Identities = 37/195 (18%), Positives = 59/195 (30%), Gaps = 12/195 (6%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQD 67
+ + + V G A+L C + ++ + G + I+
Sbjct: 92 WNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKT-VYFFSPWRGFIIRK 150
Query: 68 SRKTDDGRYQCVVKNVAGTRESTDAVLRVLVK----PYIIRGPKDTTVSASSIIVFECSV 123
++ D Y C ST L+V P I P CS
Sbjct: 151 AKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSA 210
Query: 124 GGDAVLTVHWKRLGSAMPEDRMS-------VLPSRSLQLSDVRLEDAGEYVCEAENAVGK 176
V + G E ++ R+L L+ V +DAG Y C A N VG
Sbjct: 211 TNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGT 270
Query: 177 ISASATLTVQMAPIV 191
+A+ V +
Sbjct: 271 RTATMNFQVVESHHH 285
Score = 70.0 bits (171), Expect = 5e-13
Identities = 25/145 (17%), Positives = 44/145 (30%), Gaps = 31/145 (21%)
Query: 292 PPPVILFGPANQTLPLRSEARLRCQVRGEGSVQWWRGEREVGSGPRVNVTGDGS-LVLTD 350
P PVI + LRC GSV+W + + ++ GS L +
Sbjct: 3 PAPVIEPSGPELVVEPGETVTLRCVS--NGSVEW---DGPISPYWTLDPESPGSTLTTRN 57
Query: 351 VTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPST------------YP 398
T +++G Y C + S + L + P + + + T
Sbjct: 58 ATFKNTGTYRCTELEDPMAGSTTIHLYVKDPAHS---WNLLAQEVTVVEGQEAVLPCLIT 114
Query: 399 GPPTKPTLVNQTANGLTLAWSRNNQ 423
P K +++ R
Sbjct: 115 DPALKD----------SVSLMREGG 129
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular
adhesion, ligand-independent DIME mutational analysis,
transferase; HET: EPE; 1.96A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.4
Length = 182
Score = 164 bits (417), Expect = 9e-47
Identities = 42/185 (22%), Positives = 72/185 (38%), Gaps = 11/185 (5%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGT---NL 63
+ P V+ G L C G EP + W K+G + + + + + L
Sbjct: 4 KLMGAPVKLTVSQGQPVKLNCSV-EGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFL 62
Query: 64 AIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSV 123
+++ ++D GRY C V++ T S L V P+ PKD V ++ C
Sbjct: 63 SLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCEA 122
Query: 124 GGDAV-LTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKI-SASA 181
G +T+ W R + + L+ + + + CEA N G S +A
Sbjct: 123 VGPPEPVTIVWWRGTTKIGGP-----APSPSVLNVTGVTQSTMFSCEAHNLKGLASSRTA 177
Query: 182 TLTVQ 186
T+ +Q
Sbjct: 178 TVHLQ 182
Score = 119 bits (300), Expect = 4e-31
Identities = 42/195 (21%), Positives = 67/195 (34%), Gaps = 25/195 (12%)
Query: 100 PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSR------SL 153
++ P TVS + CSV G + W + G+ + +P L
Sbjct: 3 LKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFL 62
Query: 154 QLSDVRLEDAGEYVCEAENAVGK-ISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGI 212
L V DAG Y C+ E+ IS LTV+ P P DL + C
Sbjct: 63 SLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCEA 122
Query: 213 EGSPPPST-FWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGV 271
G P P T W + + ++L + V+++ + C
Sbjct: 123 VGPPEPVTIVWWRGTTK-------------IGGPAPSPSVLNVTGVTQST---MFSCEAH 166
Query: 272 NAAGSDLAR-ASLTV 285
N G +R A++ +
Sbjct: 167 NLKGLASSRTATVHL 181
Score = 110 bits (276), Expect = 7e-28
Identities = 39/194 (20%), Positives = 73/194 (37%), Gaps = 21/194 (10%)
Query: 188 APIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSD 247
+ P L + G+ C +EG P W+ +G ++ D++ +E
Sbjct: 2 GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGA--VVQNLDQLYIPVSEQHWI 59
Query: 248 GMNLLKIQNVSRTAAPLIILCLGVNAAGSDL-ARASLTVSGPDPNPPPVILFGPANQTLP 306
G L +++V R+ A C + +++ LTV G P P + +P
Sbjct: 60 GF--LSLKSVERSDAG-RYWCQVEDGGETEISQPVWLTVEGV-----PFFTVEPKDLAVP 111
Query: 307 LRSEARLRCQVRGE---GSVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVV 363
+ +L C+ G ++ WWRG ++ VL S ++C
Sbjct: 112 PNAPFQLSCEAVGPPEPVTIVWWRG------TTKIGGPAPSPSVLNVTGVTQSTMFSCEA 165
Query: 364 KSPHGSA-SWSASL 376
+ G A S +A++
Sbjct: 166 HNLKGLASSRTATV 179
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix
bundle cytokine, receptor tyrosine kinase glycosylation;
HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 168 bits (426), Expect = 1e-46
Identities = 43/291 (14%), Positives = 81/291 (27%), Gaps = 26/291 (8%)
Query: 98 VKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSD 157
P I + V + + C G +V W S S S L ++
Sbjct: 3 SIPVIEPSVPELVVKPGATVTLRCVGNG----SVEWDGPPSP-HWTLYSDGSSSILSTNN 57
Query: 158 VRLEDAGEYVCEAENAVGKISASATLTVQMAP-IVRERPSDLRLEVGRDAVFLCGIEGSP 216
++ G Y C SA+ L V+ ++ + +DA+ C +
Sbjct: 58 ATFQNTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTDPV 117
Query: 217 PPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRT-AAPLIILCLGVNAAG 275
+ ++ + + + I + C +
Sbjct: 118 LEAGVSLVRVRGRPLMRHTN-------YSFSPWHGFTIHRAKFIQSQDYQ--CSALMGGR 168
Query: 276 SDL-ARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRGE---GSVQWWRGERE 331
+ L V PP + PA A++ C V +
Sbjct: 169 KVMSISIRLKVQ-KVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTK 227
Query: 332 VGSGPRVNVTGD-----GSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLR 377
+ + + + +L L V + +G Y+CV + G S S R
Sbjct: 228 LAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFR 278
Score = 153 bits (389), Expect = 9e-42
Identities = 43/296 (14%), Positives = 74/296 (25%), Gaps = 35/296 (11%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQD 67
V G T L C ++ W P + + L+ +
Sbjct: 7 IEPSVPELVVKPGATVTLRC-----VGNGSVEWDGPPSP----HWTLYSDGSSSILSTNN 57
Query: 68 SRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYI-IRGPKDTTVSASSIIVFECSV-GG 125
+ + G Y+C + L V ++ V + C +
Sbjct: 58 ATFQNTGTYRCTEPGDPLGGSAA-IHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTDP 116
Query: 126 DAVLTVHWKRLGSA--MPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAEN-AVGKISASAT 182
V R+ M S P + + + +Y C A +S S
Sbjct: 117 VLEAGVSLVRVRGRPLMRHTNYSFSPWHGFTIHRAKFIQSQDYQCSALMGGRKVMSISIR 176
Query: 183 LTVQMA----PIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVD 238
L VQ P + P++L G A +C ++ N L P
Sbjct: 177 LKVQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDF 236
Query: 239 NIQAEITSDGMNLLKIQNVSR------TAAPLIILCLGVNAAGSDLARASLTVSGP 288
+ + L + V + C+ N G V
Sbjct: 237 HNN---RYQKVLTLNLDQVDFQHAGNYS-------CVASNVQGKHSTSMFFRVVES 282
Score = 142 bits (358), Expect = 1e-37
Identities = 37/200 (18%), Positives = 54/200 (27%), Gaps = 14/200 (7%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKK-NGHPIDFENSKRLRLVDGTNLAIQ 66
+ V + V ALL C E + + G P+ I
Sbjct: 92 WNVLAQEVVVFEDQDALLPCLLTDPVLEAGVSLVRVRGRPLM--RHTNYSFSPWHGFTIH 149
Query: 67 DSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVK----PYIIRGPKDTTVSASSIIVFECS 122
++ YQC S L+V P + P + CS
Sbjct: 150 RAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCS 209
Query: 123 V-GGDAVLTVHWKRLGSAMPEDRMSVL------PSRSLQLSDVRLEDAGEYVCEAENAVG 175
D V + + + + S +L L V + AG Y C A N G
Sbjct: 210 ASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQG 269
Query: 176 KISASATLTVQMAPIVRERP 195
K S S V +
Sbjct: 270 KHSTSMFFRVVESAGNSHHH 289
Score = 70.4 bits (172), Expect = 3e-13
Identities = 24/151 (15%), Positives = 37/151 (24%), Gaps = 21/151 (13%)
Query: 293 PPVILFGPANQTLPLRSEARLRCQVRGEGSVQWWRGEREVGSGPRVNVTGDGSLVLTDVT 352
PVI + + LRC G GSV+W + L + T
Sbjct: 4 IPVIEPSVPELVVKPGATVTLRC--VGNGSVEWDGPPSP--HWTLYSDGSSSILSTNNAT 59
Query: 353 KEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTY-------------PG 399
+++G Y C S + L + P P +
Sbjct: 60 FQNTGTYRCTEPGDPLGGSAAIHLYVKDPARP----WNVLAQEVVVFEDQDALLPCLLTD 115
Query: 400 PPTKPTLVNQTANGLTLAWSRNNQIGSSSLL 430
P + + G L N
Sbjct: 116 PVLEAGVSLVRVRGRPLMRHTNYSFSPWHGF 146
Score = 68.8 bits (168), Expect = 1e-12
Identities = 17/100 (17%), Positives = 26/100 (26%), Gaps = 6/100 (6%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLV-WKKNGHPIDFENSKRL---RLVDGTN 62
+ P G+ A + C V + N + R
Sbjct: 188 ALTLVPAELVRIRGEAAQIVCS-ASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLT 246
Query: 63 LAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYI 102
L + G Y CV NV G ++ RV+
Sbjct: 247 LNLDQVDFQHAGNYSCVASNVQGKHSTS-MFFRVVESAGN 285
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell
adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 163 bits (414), Expect = 5e-46
Identities = 59/206 (28%), Positives = 86/206 (41%), Gaps = 18/206 (8%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFE--NSKRLRLVDGT--- 61
P V + A L C G PEPT+ W K+G P+ S R++ DG
Sbjct: 11 RIIEHPTDLVVKKNEPATLNCKV-EGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFF 69
Query: 62 NLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLV-KPYIIRGPKDTTVSASSIIVFE 120
+Q ++ D G Y CV KN G S A L++ V + PKDT V+ + E
Sbjct: 70 YRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLE 129
Query: 121 CS-VGGDAVLTVHWKRLGSAMPE---------DRMSVLPSRSLQLSDVRLEDAGEYVCEA 170
C G T+ W + G + + R+ ++ +L +S+V D G Y C A
Sbjct: 130 CGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIA 189
Query: 171 ENAVGKI-SASATLTVQMAPIVRERP 195
+N VG S+ A L VQ+
Sbjct: 190 QNLVGTRESSYAKLIVQVKAAAHHHH 215
Score = 123 bits (309), Expect = 7e-32
Identities = 57/113 (50%), Positives = 76/113 (67%), Gaps = 6/113 (5%)
Query: 1 ISLLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPID------FENSKR 54
I++LR++FRV+PK RVA G+TALLECGPP+G PEPTL+W K+G P+D F S R
Sbjct: 104 IAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSR 163
Query: 55 LRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPK 107
+R+VDG NL I + D+G Y+C+ +N+ GTRES+ A L V VK
Sbjct: 164 VRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQVKAAAHHHHH 216
Score = 119 bits (301), Expect = 9e-31
Identities = 49/215 (22%), Positives = 76/215 (35%), Gaps = 29/215 (13%)
Query: 99 KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKR----LGSAMPEDRMSVLPSRSL- 153
P II P D V + C V G T+ W + + + + +L
Sbjct: 9 SPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALF 68
Query: 154 ---QLSDVRLEDAGEYVCEAENAVGKI-SASATLTVQ-MAPIVRERPSDLRLEVGRDAVF 208
+ + +D GEY C A+N VG+ S A+L + + R P D R+ G A+
Sbjct: 69 FYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALL 128
Query: 209 LCG-IEGSPPPSTFWMLEGNR-SLIYPGDRVDNIQAEITSDGMNLLKIQNVSR------T 260
CG +G P P+ W+ +G + + + I G L I NV
Sbjct: 129 ECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGN--LLISNVEPIDEGNYK 186
Query: 261 AAPLIILCLGVNAAGSDLAR-ASLTVSGPDPNPPP 294
C+ N G+ + A L V
Sbjct: 187 -------CIAQNLVGTRESSYAKLIVQVK-AAAHH 213
Score = 104 bits (261), Expect = 2e-25
Identities = 45/219 (20%), Positives = 83/219 (37%), Gaps = 21/219 (9%)
Query: 181 ATLTVQM-APIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDN 239
A L Q +P + E P+DL ++ A C +EG P P+ W +G + ++ +
Sbjct: 1 APLAGQYQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEP--VSTNEKKSH 58
Query: 240 IQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLAR-ASLTVSGPDPNPPPVILF 298
+Q C+ N G ++R ASL ++
Sbjct: 59 RVQFKDGALFFYRTMQGKKEQDGG-EYWCVAKNRVGQAVSRHASLQIAVL----RDDFRV 113
Query: 299 GPANQTLPLRSEARLRC-QVRG--EGSVQWWRGEREV--------GSGPRVNVTGDGSLV 347
P + + A L C +G E ++ W + + G+ RV + G+L+
Sbjct: 114 EPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLL 173
Query: 348 LTDVTKEDSGEYTCVVKSPHGSA-SWSASLRFESPTNPN 385
+++V D G Y C+ ++ G+ S A L + +
Sbjct: 174 ISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQVKAAAH 212
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo
sapiens}
Length = 339
Score = 166 bits (422), Expect = 1e-45
Identities = 59/314 (18%), Positives = 103/314 (32%), Gaps = 37/314 (11%)
Query: 6 EEFRVQPKSQRVAAGDTALLECGPPR------GHPEPTLVWKKNGHPIDFENSKRLRL-V 58
K + G+ L C P L W KN + R+
Sbjct: 19 RFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWA 78
Query: 59 DGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIR----GPKDTTVSAS 114
L + + + D G Y C +N + + LRV P+ T+S S
Sbjct: 79 QDGALWLLPALQEDSGTYVCTTRNASYC-DKMSIELRVFENTDAFLPFISYPQILTLSTS 137
Query: 115 SIIV---FECSVGGDAVLTVHWKRLGSAMPED---RMSVLPSRSLQLSDVRLEDAGEYVC 168
++V + + W + + +D +SV + L + DV LEDAG Y C
Sbjct: 138 GVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTTHLLVHDVALEDAGYYRC 197
Query: 169 EAENAVGKISASATLTVQ---------MAPIVRERPSDLRLEVGRDAVFLCGI---EGSP 216
A + T +++ P++ + +G C + G+P
Sbjct: 198 VLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISASLGSRLTIPCKVFLGTGTP 257
Query: 217 PPSTFWMLEGNRSL--IYPGDRV-DNIQAEITSDGMNL----LKIQNVSRTAAPLIILCL 269
+ W + + YPG RV + + E + + N L V+R + C+
Sbjct: 258 LTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCV 317
Query: 270 GVNAAGSDLARASL 283
N R ++
Sbjct: 318 VHNTLSFQTLRTTV 331
Score = 162 bits (411), Expect = 4e-44
Identities = 54/328 (16%), Positives = 93/328 (28%), Gaps = 64/328 (19%)
Query: 100 PYIIRGPKDTTVSASSIIVFECS-------VGGDAVLTVHWKRLGSAMP----EDRMSVL 148
+ R K + C + + W + SA E+
Sbjct: 19 RFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWA 78
Query: 149 PSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAP--IVRERPSDLRLEVGRDA 206
+L L ED+G YVC NA S L V + L +
Sbjct: 79 QDGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQILTLSTSG 138
Query: 207 VFLCG-----IEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSR-- 259
V +C W + L+ + ++ G L + +V+
Sbjct: 139 VLVCPDLSEFTRDKTDVKIQWYKDSL--LLDKDNEK-----FLSVRGTTHLLVHDVALED 191
Query: 260 ----TAAPLIILCLGVNAAGSDLARAS----LTVSGPDPNPPPVILFGPANQTLPLRSEA 311
C+ A + L + PVI+ + L S
Sbjct: 192 AGYYR-------CVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISASLGSRL 244
Query: 312 RLRCQVR-GEGS----VQWWRG----------EREVGSGPRVNVTGDG------SLVLTD 350
+ C+V G G+ + WW V GPR + + L+
Sbjct: 245 TIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDP 304
Query: 351 VTKEDSG-EYTCVVKSPHGSASWSASLR 377
VT+ED ++ CVV + + +++
Sbjct: 305 VTREDLHMDFKCVVHNTLSFQTLRTTVK 332
Score = 89.7 bits (222), Expect = 2e-19
Identities = 39/231 (16%), Positives = 65/231 (28%), Gaps = 45/231 (19%)
Query: 178 SASATLTVQMAPIVRERPSDLRLE-------VGRDAVFLCGI-------EGSPPPSTFWM 223
+ TL G C SP + W
Sbjct: 1 ADPFTLQPAAHTGAARSCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWH 60
Query: 224 LEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSR------TAAPLIILCLGVNAAGSD 277
+ PG+ + A+ L + + C NA+ D
Sbjct: 61 KNDSA-RTVPGEEETRMWAQ-----DGALWLLPALQEDSGTYV-------CTTRNASYCD 107
Query: 278 LARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQ-----VRG--EGSVQWWRGER 330
L V + F Q L L + L C R + +QW++
Sbjct: 108 KMSIELRVFEN---TDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSL 164
Query: 331 EV--GSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFE 379
+ + ++V G L++ DV ED+G Y CV+ H ++ + E
Sbjct: 165 LLDKDNEKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIE 215
Score = 58.9 bits (142), Expect = 3e-09
Identities = 21/99 (21%), Positives = 35/99 (35%), Gaps = 6/99 (6%)
Query: 301 ANQTLPLR-SEARLRCQVRGEG--SVQWWR--GEREVGSGPRVNVTG-DGSLVLTDVTKE 354
+ + LR + ++ W + R V + DG+L L +E
Sbjct: 32 EGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQDGALWLLPALQE 91
Query: 355 DSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPE 393
DSG Y C ++ S LR T+ + F P+
Sbjct: 92 DSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQ 130
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 164 bits (415), Expect = 7e-45
Identities = 42/300 (14%), Positives = 77/300 (25%), Gaps = 29/300 (9%)
Query: 10 VQPKSQRVAAGDTALLECGPPR--------GHPEPTLVWKKNGHPIDFENSKRLRLVDGT 61
+ A G+ +C P + + W+K G R+ +G
Sbjct: 34 GGTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRR---PLNRRVKNGD 90
Query: 62 NLAIQDSRKTDDGR-YQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFE 120
L I + D R Y C V G + P I + I
Sbjct: 91 -LWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYELGTHDKYGIDLY 149
Query: 121 CSV-GGDAVLTVHWKRLGSAMPED-RMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKIS 178
C + + W + + D ++L + + LED+G Y C +I
Sbjct: 150 CGILYAKHYNNITWYKNNQELIIDGTKYSQSGQNLIIHNPELEDSGRYDCYVHYDDVRIK 209
Query: 179 ASATLTVQMAPIVRER---------PSDLRLEVGRDAVFLCGIEGSP----PPSTFWMLE 225
++ V + + +G A C + W
Sbjct: 210 NDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENP 269
Query: 226 GNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTV 285
+ + + L +NV+ C G N ++ +
Sbjct: 270 SGWIIGLDFGVYSILTSSGGITE-ATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVVL 328
Score = 137 bits (346), Expect = 1e-35
Identities = 40/333 (12%), Positives = 81/333 (24%), Gaps = 55/333 (16%)
Query: 85 GTRESTDAVLRVLVKPYII-RGPKDTTVSASSIIVFECSVGGDAVL---------TVHWK 134
R++ A + P + G + + +C D++L V+W+
Sbjct: 14 KMRDTLPAKDSKWLNPSCMFGGTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWE 73
Query: 135 RLGSAMPEDRMSVLPSRSLQLSDVRLEDAGE-YVCEAENAVGKI-SASATLTVQMAPIVR 192
++G V + L +++ D+ Y+C G ++ P
Sbjct: 74 KIGKTRRPLNRRV-KNGDLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCI 132
Query: 193 ERPSDLRLEVGRDAVFLCGI-EGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNL 251
+L CGI + W + S
Sbjct: 133 PETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQ--ELIIDGT-------KYSQSGQN 183
Query: 252 LKIQNVSR------TAAPLIILCLGVNAAGSDLARASLTVSGP----DPNPPPVILFGPA 301
L I N C ++ L
Sbjct: 184 LIIHNPELEDSGRYD-------CYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDP 236
Query: 302 NQTLPLRSEARLRCQVRGE------GSVQWWRGEREVGSGPR--------VNVTGDGSLV 347
+ + A + C + W + + +L
Sbjct: 237 KINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLY 296
Query: 348 LTDVTKEDSGE-YTCVVKSPHGSASWSASLRFE 379
+VT+E G YTC + + + + ++ E
Sbjct: 297 FENVTEEYIGNTYTCRGHNYYFDKTLTTTVVLE 329
Score = 126 bits (317), Expect = 6e-32
Identities = 33/201 (16%), Positives = 58/201 (28%), Gaps = 24/201 (11%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQD 67
+ L CG + W KN + + +K + G NL I +
Sbjct: 131 CIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQ--SGQNLIIHN 188
Query: 68 SRKTDDGRYQCVVKNVAGTRESTDAVLRVL--------VKPYIIRGPKDTTVSASSIIVF 119
D GRY C V ++ V R + + V+
Sbjct: 189 PELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANI 248
Query: 120 ECSVGGD----AVLTVHWKRLGSAM---PEDRMSVLPSR------SLQLSDVRLEDAGE- 165
C+ + + W+ + S+L S +L +V E G
Sbjct: 249 TCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNT 308
Query: 166 YVCEAENAVGKISASATLTVQ 186
Y C N + + T+ ++
Sbjct: 309 YTCRGHNYYFDKTLTTTVVLE 329
Score = 83.3 bits (205), Expect = 3e-17
Identities = 43/344 (12%), Positives = 83/344 (24%), Gaps = 44/344 (12%)
Query: 162 DAGEYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTF 221
D + E N + + + + +G C S
Sbjct: 3 DIENEITEFFNKMRDTLPAKDSKWLNPSCMFGGTMNDMAALGEPFSAKCPPIEDSLLSHR 62
Query: 222 WMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARA 281
+ + N + +G L I N + + LC G +
Sbjct: 63 YNDKDNVVNWEKIGKTRRPLNRRVKNGD--LWIANYTSNDSHRRYLCTVTTKNGDC-VQG 119
Query: 282 SLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG---EGSVQWWRGEREVGSGPRV 338
+ PP + + L C + ++ W++ +E+
Sbjct: 120 IVRS---HIRKPPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTK 176
Query: 339 NVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYP 398
+L++ + EDSG Y C V + +
Sbjct: 177 YSQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKI-------LTVIPSQDHR 229
Query: 399 GPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSS----------PSG 448
+N T IG + + S +
Sbjct: 230 FKLILDPKINVT-------------IGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGL 276
Query: 449 DTATATWVRVATNVPSPILTVTNLT---VGLTYTFLVRALNSHG 489
D + + + + L N+T +G TYT R N +
Sbjct: 277 DFGVYSILTSSGGITEATLYFENVTEEYIGNTYT--CRGHNYYF 318
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 158 bits (400), Expect = 4e-44
Identities = 60/202 (29%), Positives = 85/202 (42%), Gaps = 13/202 (6%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPI----DFENSKRLRLVDGT- 61
P V+ G+ A L C G P PT+ W K G + D S R+ L G+
Sbjct: 11 RIVEHPSDLIVSKGEPATLNCKA-EGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSL 69
Query: 62 ---NLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLV-KPYIIRGPKDTTVSASSII 117
+ + D+G Y CV +N G S DA L V + + + P D V+
Sbjct: 70 FFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVGEPA 129
Query: 118 VFECSV-GGDAVLTVHWKRLGSAMPE-DRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVG 175
V EC G T+ WK+ GS + + D + L ++ R DAG+YVC N VG
Sbjct: 130 VMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGGKLMITYTRKSDAGKYVCVGTNMVG 189
Query: 176 KI-SASATLTVQMAPIVRERPS 196
+ S A LTV P + +
Sbjct: 190 ERESEVAELTVLERPSFVKAAA 211
Score = 126 bits (318), Expect = 4e-33
Identities = 46/106 (43%), Positives = 66/106 (62%), Gaps = 2/106 (1%)
Query: 1 ISLLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG 60
+++LR++FR P VA G+ A++EC PPRGHPEPT+ WKK+G P+D + + G
Sbjct: 107 VAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLD--DKDERITIRG 164
Query: 61 TNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGP 106
L I +RK+D G+Y CV N+ G RES A L VL +P ++
Sbjct: 165 GKLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLERPSFVKAA 210
Score = 123 bits (311), Expect = 4e-32
Identities = 57/232 (24%), Positives = 82/232 (35%), Gaps = 42/232 (18%)
Query: 92 AVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED------RM 145
++ + P I+ P D VS C G T+ W + G + D
Sbjct: 2 SLRQEDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHR 61
Query: 146 SVLPSRSLQLSDV-----RLEDAGEYVCEAENAVGKI-SASATLTVQ-MAPIVRERPSDL 198
+LPS SL + D G YVC A N +G+ S A+L V + R+ PSD+
Sbjct: 62 MLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDV 121
Query: 199 RLEVGRDAVFLCG-IEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNV 257
+ VG AV C G P P+ W +G+ + D G L I
Sbjct: 122 MVAVGEPAVMECQPPRGHPEPTISWKKDGSP--LDDKDER-----ITIRGG--KLMITYT 172
Query: 258 SR------TAAPLIILCLGVNAAGSDLAR-ASLTVSGPDPNPPPVILFGPAN 302
+ C+G N G + A LTV P + A+
Sbjct: 173 RKSDAGKYV-------CVGTNMVGERESEVAELTV-----LERPSFVKAAAH 212
Score = 114 bits (287), Expect = 6e-29
Identities = 47/223 (21%), Positives = 76/223 (34%), Gaps = 22/223 (9%)
Query: 181 ATLTV-QMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDN 239
+L P + E PSDL + G A C EG P P+ W G R +
Sbjct: 1 GSLRQEDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGER--VETDKDDPR 58
Query: 240 IQAEITSDGMNLLKIQNVSRTAAPL----IILCLGVNAAGSDLAR-ASLTVSGPDPNPPP 294
+ G L + + +C+ N G ++ ASL V+
Sbjct: 59 SHRMLLPSGS--LFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAIL----RD 112
Query: 295 VILFGPANQTLPLRSEARLRCQVRG---EGSVQWWRGEREVGSGPRVNVTGDGSLVLTDV 351
P++ + + A + CQ E ++ W + + G L++T
Sbjct: 113 DFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGGKLMITYT 172
Query: 352 TKEDSGEYTCVVKSPHGSA-SWSASLRFESPTNPNIGFFRAPE 393
K D+G+Y CV + G S A L + F +A
Sbjct: 173 RKSDAGKYVCVGTNMVGERESEVAELTVLERPS----FVKAAA 211
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane,
glycoprotein, signal, complex (immunoglobulin/receptor);
2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB:
1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 159 bits (403), Expect = 2e-43
Identities = 47/306 (15%), Positives = 91/306 (29%), Gaps = 31/306 (10%)
Query: 9 RVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGH--PIDFENSKRLRLVDGTNLAIQ 66
R + +A + + C + T+ W K+ P+ E + R+ L
Sbjct: 9 REEKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEK-LWFV 67
Query: 67 DSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKP----YIIRGPKDTTVSASSIIVFECS 122
++ D G Y CVV+N + + + Y + + + C
Sbjct: 68 PAKVEDSGHYYCVVRNSSYCLRIK-ISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCP 126
Query: 123 ------VGGDAVLTVHWKRLGSAMPEDRMSVLPSR-SLQLSDVRLEDAGEYVCEAENAVG 175
+ + + W + + D + + L + +V + G Y C A
Sbjct: 127 YMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYL 186
Query: 176 KISASATLTVQMA----------PIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLE 225
T ++ IV + +++G +C + G +W
Sbjct: 187 GKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWN 246
Query: 226 G------NRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLA 279
G + L V+N + S + +L I + C N G D A
Sbjct: 247 GSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAA 306
Query: 280 RASLTV 285
L
Sbjct: 307 YIQLIY 312
Score = 140 bits (353), Expect = 1e-36
Identities = 51/316 (16%), Positives = 90/316 (28%), Gaps = 62/316 (19%)
Query: 106 PKDTTVSASSIIVFECSV-GGDAVLTVHWKRLGSAMP----EDRMSVLPSRSLQLSDVRL 160
SA+ I V C + + T+ W + S P + L ++
Sbjct: 12 KIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKV 71
Query: 161 EDAGEYVCEAENAVGKISASATLTVQMAP----IVRERPSDLRLEVGRDAVFLCG----- 211
ED+G Y C N+ + + + +L V D +C
Sbjct: 72 EDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFF 131
Query: 212 -IEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSR------TAAPL 264
E + P W + + + S + L + NV+ T
Sbjct: 132 KNENNELPKLQWYKDCK--PLLLDNI-------HFSGVKDRLIVMNVAEKHRGNYT---- 178
Query: 265 IILCLGVNAAGSDLARAS----LTVSGPDPNPPPVILFGPANQTLPLR--SEARLRCQVR 318
C + + PVI+ PAN+T+ + S+ +L C V
Sbjct: 179 ---CHASYTYLGKQYPITRVIEFITLEENKPTRPVIV-SPANETMEVDLGSQIQLICNVT 234
Query: 319 GE--GSVQWWRGEREVGSGPRV---------------NVTGDGSLVLTDVTKED-SGEYT 360
G+ W + V T L ++++ +T
Sbjct: 235 GQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFT 294
Query: 361 CVVKSPHGSASWSASL 376
C K+ HG + L
Sbjct: 295 CFAKNTHGIDAAYIQL 310
Score = 100 bits (251), Expect = 2e-23
Identities = 42/315 (13%), Positives = 82/315 (26%), Gaps = 38/315 (12%)
Query: 192 RERPSDLRLEVGRDAVFLCGIEGSPPPSTF-WMLEGNRSLIYPGDRVDNIQAEITSDGMN 250
RE L V C + + T W + +++ + I
Sbjct: 9 REEKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQAS-----RIHQHK-E 62
Query: 251 LLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSE 310
L + C+ N++ + S +P Q LP+ +
Sbjct: 63 KLWFVPAKVEDSGHYY-CVVRNSSYCLRIKISAKFVENEP-NLCYNAQAIFKQKLPVAGD 120
Query: 311 ARLRCQVRGEG--------SVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCV 362
L C +QW++ + + L++ +V ++ G YTC
Sbjct: 121 GGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCH 180
Query: 363 VKSPHGSASWSAS----LRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGL---T 415
+ + + P +P T + G
Sbjct: 181 ASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDI 240
Query: 416 LAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVG 475
W N + + YS P++ T +L ++ +
Sbjct: 241 AYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLIT-------------VLNISEIESR 287
Query: 476 -LTYTFLVRALNSHG 489
+ F A N+HG
Sbjct: 288 FYKHPFTCFAKNTHG 302
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell
adhesion, transmembrane, disulfide bond, alternative
splicing; HET: NAG; 1.95A {Rattus norvegicus}
Length = 190
Score = 154 bits (391), Expect = 3e-43
Identities = 38/191 (19%), Positives = 65/191 (34%), Gaps = 17/191 (8%)
Query: 8 FRVQPKSQRVAAGDTALLECG-PPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQ 66
+ + L+C H W KNG + + I
Sbjct: 6 IVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATR----KNASNMEYRIN 61
Query: 67 DSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGD 126
R D G Y CV V+ + + A + V P I + + + C G
Sbjct: 62 KPRAEDSGEYHCVYHFVSAPKAN--ATIEVKAAPDITGHKRSENKNEGQDAMMYCKSVGY 119
Query: 127 AVLTVHWKRLGSAMPE------DRMSVLPS---RSLQLSDVRL-EDAGEYVCEAENAVGK 176
W++ + + E R ++ L + ++++ ED GEY C A N++G
Sbjct: 120 PHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGS 179
Query: 177 ISASATLTVQM 187
S S L V++
Sbjct: 180 ASVSTVLRVRV 190
Score = 152 bits (385), Expect = 2e-42
Identities = 41/190 (21%), Positives = 72/190 (37%), Gaps = 5/190 (2%)
Query: 98 VKPYIIRGPKDTTVSASSIIVFECSVGGDA--VLTVHWKRLGSAMPEDRMSVLPSRSLQL 155
+P I+ + + + +C++ + ++ +W + G + R + ++
Sbjct: 2 NEPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATR-KNASNMEYRI 60
Query: 156 SDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGS 215
+ R ED+GEY C + V A+AT+ V+ AP + G+DA+ C G
Sbjct: 61 NKPRAEDSGEYHCVY-HFVSAPKANATIEVKAAPDITGHKRSENKNEGQDAMMYCKSVGY 119
Query: 216 PPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAG 275
P P W + N + I + L I N+ T P C N+ G
Sbjct: 120 PHPEWMWRKKENGVFEEISNSSGRFFI-INKENYTELNIVNLQITEDPGEYECNATNSIG 178
Query: 276 SDLARASLTV 285
S L V
Sbjct: 179 SASVSTVLRV 188
Score = 100 bits (250), Expect = 3e-24
Identities = 36/210 (17%), Positives = 61/210 (29%), Gaps = 41/210 (19%)
Query: 186 QMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPP--STFWMLEGNRSLIYPGDRVDNIQAE 243
Q P + + + C + S ++W G + A
Sbjct: 1 QNEPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVE-----------LTAT 49
Query: 244 ITSDGMNLLKIQNVSRTAAPLIILCLGV-----NAAGSDLARASLTVSGPDPNPPPVILF 298
+ +I + G + + A A++ V P I
Sbjct: 50 RKNASNMEYRINKPRAEDS-------GEYHCVYHFVSAPKANATIEVKAA-----PDITG 97
Query: 299 GPANQTLPLRSEARLRCQVRGE--GSVQWWRGEREV-----GSGPRVNVTGDG---SLVL 348
++ +A + C+ G W + E V S R + L +
Sbjct: 98 HKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNI 157
Query: 349 TDV-TKEDSGEYTCVVKSPHGSASWSASLR 377
++ ED GEY C + GSAS S LR
Sbjct: 158 VNLQITEDPGEYECNATNSIGSASVSTVLR 187
Score = 73.3 bits (180), Expect = 6e-15
Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 9/99 (9%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV------DG 60
+ +S+ G A++ C G+P P +W+K + + E S +
Sbjct: 94 DITGHKRSENKNEGQDAMMYCK-SVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENY 152
Query: 61 TNLAIQDSRKTDD-GRYQCVVKNVAGTRESTDAVLRVLV 98
T L I + + T+D G Y+C N G+ S VLRV V
Sbjct: 153 TELNIVNLQITEDPGEYECNATNSIGSA-SVSTVLRVRV 190
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 167 bits (424), Expect = 3e-43
Identities = 86/555 (15%), Positives = 154/555 (27%), Gaps = 107/555 (19%)
Query: 210 CGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCL 269
+ P + W + G+ + + + I + +I +
Sbjct: 98 VKVNNGPLGNPIWNISGDPTRTWNRAEL-AISTFWPNFYQ---------------VIFEV 141
Query: 270 GVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRGEGS--VQWWR 327
+ LA + V G P N + A +C G + W
Sbjct: 142 ITSGHQGYLAIDEVKVLGH-PCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWL 200
Query: 328 GEREVGSGPR------VNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESP 381
+V P + S + + TK D+G+Y C++++ G + +
Sbjct: 201 QGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVK- 259
Query: 382 TNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPL 441
EP P P P L + A L + + N+ G ++ +VE
Sbjct: 260 -----------EP---PVPIAPPQLASVGATYLWIQLNANSINGDGPIVAREVEY----- 300
Query: 442 PSSSPSGDTATATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIV 501
TA+ +W V S + +L Y V +
Sbjct: 301 -------CTASGSWNDR-QPVDSTSYKIGHLDPDTEYEISVLLTRPGEGG-TGSPGPALR 351
Query: 502 LRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPMTSTSVK 561
R ++ P R + L+ V + S +
Sbjct: 352 TRTKCAD---------------PM--------RGPRKLE-----------VVEVKSRQIT 377
Query: 562 LTWEILNTDYIEGV-------YIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYE 614
+ WE + Y Y G + +T L+ Y+
Sbjct: 378 IRWEPFGYNVTRCHSYNLTVHYCYQVGGQEQVREEVSWDTENSHPQ-HTITNLSPYTNVS 436
Query: 615 FFLVPFFGSVDGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVI 674
L+ S V+T E P VP + + L+W+ P GVI
Sbjct: 437 VKLILMNPEGRK-ESQELIVQTDEDLPGAVPTESIQGSTFEEKIFLQWREPT--QTYGVI 493
Query: 675 RTYQII--------VGGGNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGP 726
Y+I ++ ++ + L L G YS ++ A+ G GP
Sbjct: 494 TLYEITYKAVSSFDPEIDLSNQSGRVSKLGNETHFLFFGLYPGTTYSFTIRASTAKGFGP 553
Query: 727 YSRPALLSLTSGPEP 741
+ + S P
Sbjct: 554 PATNQFTTKISAPSM 568
Score = 134 bits (337), Expect = 2e-32
Identities = 110/780 (14%), Positives = 192/780 (24%), Gaps = 169/780 (21%)
Query: 30 PRGHPEPTL-VWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCV--VKNVAGT 86
+PT W +G + S R +L + ++ D C+ V+
Sbjct: 31 VNTLTKPTSDPWMPSGSFMLVNASGRPE-GQRAHLLLPQLKEND---THCIDFHYFVSSK 86
Query: 87 RESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMS 146
S +L V V + W G +
Sbjct: 87 SNSPPGLLNVY-----------------------VKVNNGPLGNPIWNISGDPTRTWNRA 123
Query: 147 VLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAP----IVRERPSDLRLEV 202
L +S + A + V P R ++ +
Sbjct: 124 -----ELAISTFWPNFYQVIFEVITSGHQGYLAIDEVKVLGHPCTRTPHFLRIQNVEVNA 178
Query: 203 GRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAA 262
G+ A F C G L+G P I+ + + + N ++ A
Sbjct: 179 GQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKE---IKVTSSRRFIASFNVVNTTKRDA 235
Query: 263 PLIILCLGVNAAGSDLARASLTVSG--PDPNPPPVILFGPANQ-TLPLRSEARLRCQVRG 319
C+ G ++ + V P P PP + A + L + + + G
Sbjct: 236 GKYR-CMIRTEGGVGISNYAELVVKEPPVPIAPPQLASVGATYLWIQLNANS-----ING 289
Query: 320 EGSVQWWRGE-REVGSGPRVNVTGDG-SLVLTDVTKEDSGEYTCVV----KSPHGSASWS 373
+G + E D S + + + EY V G+ S
Sbjct: 290 DGPIVAREVEYCTASGSWNDRQPVDSTSYKIGHLDPDT--EYEISVLLTRPGEGGTGSPG 347
Query: 374 ASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGLTLAWSR-NNQIGSSSLLGY 432
+LR + + P K +V + +T+ W +
Sbjct: 348 PALRTRTK------------CADPMRGPRKLEVVEVKSRQITIRWEPFGYNVTRCHSYNL 395
Query: 433 QVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSA 492
V + G V T P T+TNL+ + + +N G
Sbjct: 396 TVHYCYQ------VGGQEQVREEVSWDTENSHPQHTITNLSPYTNVSVKLILMNPEG--- 446
Query: 493 PSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEV 552
S E++++ T E+ P +
Sbjct: 447 RKE-SQELIVQ-T--------------DEDLPGAVP-------------------TESIQ 471
Query: 553 KPMTSTSVKLTWEILNTDY--IEGVYIY-----SRGLDPPASVAMLTVLHAGEASGFLVT 605
+ L W Y I I S + S V G + FL
Sbjct: 472 GSTFEEKIFLQWREPTQTYGVITLYEITYKAVSSFDPEIDLSNQSGRVSKLGNETHFLFF 531
Query: 606 GLAHYSRYEFFLVPFFGSVDGKPSNLRAVRTLECEPSGVPQLTD-PVLLNATSVLLKWKP 664
GL + Y F + G P+ + T PS + P+ +V + KP
Sbjct: 532 GLYPGTTYSFTIRASTAKGFGPPATNQ-FTTKISAPSMPAYELETPLNQTDNTVTVMLKP 590
Query: 665 PPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLT-------------------- 704
+ + YQI+V T + +
Sbjct: 591 AH--SRGAPVSVYQIVVEEERPRRTKKTTEILKCYPVPIHFQNASLLNSQYYFAAEFPAD 648
Query: 705 ----------------------NLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGPEPR 742
L Y + A +RA ++ P+
Sbjct: 649 SLQAAQPFTIGDNKTYNGYWNTPLLPYKSYRIYFQAASRANGETKIDCVQVATKGAATPK 708
Score = 103 bits (257), Expect = 1e-22
Identities = 91/656 (13%), Positives = 170/656 (25%), Gaps = 71/656 (10%)
Query: 29 PPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRE 88
P +W +G P N LAI V+ +
Sbjct: 99 KVNNGPLGNPIWNISGDPTRTWNR--------AELAISTFWPNFYQVIFEVITSGHQGYL 150
Query: 89 STDAVLRVLV---KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRL---GSAMPE 142
+ D V + + ++ V+A F+CS G V P
Sbjct: 151 AIDEVKVLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPL 210
Query: 143 DRMSVLPSRS----LQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERPSDL 198
+ V SR + + DAG+Y C G ++ V P V P L
Sbjct: 211 KEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIAPPQL 270
Query: 199 RLEVGRDAVFL---CGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQ 255
VG +++ P +E + G D + TS KI
Sbjct: 271 A-SVGATYLWIQLNANSINGDGPIVAREVEYCTA---SGSWNDRQPVDSTS-----YKIG 321
Query: 256 NVSR-TAAPLIILCLGVNAAG----SDLARASLTVSGPDPNPPPVILFGPANQTLPLRSE 310
++ T + +L G R + P P + + ++ + +R E
Sbjct: 322 HLDPDTEYEISVLLTRPGEGGTGSPGPALRTRTKCADPMRGPRKLEVVEVKSRQITIRWE 381
Query: 311 ARLRCQVRGEG---SVQWWRGEREVGSGPRVNV----TGDGSLVLTDVTKEDSGEYTCVV 363
R +V + +T+++ + +
Sbjct: 382 PFGYNVTRCHSYNLTVHYCYQVGGQEQVREEVSWDTENSHPQHTITNLSP--YTNVSVKL 439
Query: 364 K--SPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGLTLAWSRN 421
+P G S L ++ + P PT+ + + L W
Sbjct: 440 ILMNPEGR-KESQELIVQTDEDL---------PG---AVPTESIQGSTFEEKIFLQWREP 486
Query: 422 NQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVGLTYTFL 481
Q + Y++ Y + + V N L G TY+F
Sbjct: 487 TQTYGV-ITLYEIT-YKAVSSFDPEIDLSNQSGRVSKLGNETH--FLFFGLYPGTTYSFT 542
Query: 482 VRALNSHGLSAPSPLS-----DEIVLRGTFSEGIFSEGGKGIF-SENFPDEGRGESLRRA 535
+RA + G P+ + E ++ +
Sbjct: 543 IRASTAKGFGPPATNQFTTKISAPSMPAYELETPLNQTDNTVTVMLKPAHSRGAPVSVYQ 602
Query: 536 RQHLQEGGGSLIELTEVKPMTSTSVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVLH 595
+E + TE+ V + ++ + + + D + T+
Sbjct: 603 IVVEEERPRRTKKTTEIL--KCYPVPIHFQNASLLNSQYYFAAEFPADSLQAAQPFTIGD 660
Query: 596 AGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVRTLECEPSGVPQLTDPV 651
+G+ T L Y Y + + + V T +
Sbjct: 661 NKTYNGYWNTPLLPYKSYRIYFQAASRANGETKIDCVQVATKGAATPKPVPEPEKQ 716
Score = 60.9 bits (147), Expect = 2e-09
Identities = 36/201 (17%), Positives = 68/201 (33%), Gaps = 18/201 (8%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN----L 63
++ ++ V AG A +C G G + K +++
Sbjct: 167 HFLRIQNVEVNAGQFATFQC-SAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASF 225
Query: 64 AIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIV--FEC 121
+ ++ K D G+Y+C+++ G S A L V P I P+ +V A+ + +
Sbjct: 226 NVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIAPPQLASVGATYLWIQLNAN 285
Query: 122 SVGGDAVLT---VHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEY----VCEAENAV 174
S+ GD + V + + + S S ++ L+ EY +
Sbjct: 286 SINGDGPIVAREVEYCTASG--SWNDRQPVDSTSYKIGH--LDPDTEYEISVLLTRPGEG 341
Query: 175 GKISASATLTVQMAPIVRERP 195
G S L + R
Sbjct: 342 GTGSPGPALRTRTKCADPMRG 362
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1,
isoform 2; hydrolase, immunoglobulin domain, nucleus,
protease; 2.80A {Homo sapiens}
Length = 218
Score = 154 bits (391), Expect = 8e-43
Identities = 41/206 (19%), Positives = 58/206 (28%), Gaps = 29/206 (14%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQ 66
+ V P+S+ V AG L C GHP W K I N+ L
Sbjct: 20 KITVNPESKAVLAGQFVKLCC-RATGHPFVQYQWFKMNKEIPNGNTSELI--------FN 70
Query: 67 DSRKTDDGRYQCVVKNVAGTRESTDAVLRVLV---------------KPYIIRGPKDTTV 111
D G Y C V N S + L V K I P +
Sbjct: 71 AVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKL 130
Query: 112 SASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAE 171
S +V +C G + W + + + + + V LE G Y C
Sbjct: 131 MPGSTLVLQCVAVGSPIPHYQWFKNELPLTHET-----KKLYMVPYVDLEHQGTYWCHVY 185
Query: 172 NAVGKISASATLTVQMAPIVRERPSD 197
N + + P +
Sbjct: 186 NDRDSQDSKKVEIIIDELNNLGHPDN 211
Score = 122 bits (308), Expect = 9e-32
Identities = 42/244 (17%), Positives = 64/244 (26%), Gaps = 56/244 (22%)
Query: 85 GTRESTDAVLRVLV--KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPE 142
G+ LV I P+ V A + C G + W ++ +P
Sbjct: 2 GSSHHHHHHSSGLVPRGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPN 61
Query: 143 DRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGK-ISASATLTVQ--------------- 186
+ L + V ++DAG YVC N S + L V
Sbjct: 62 GN-----TSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSE 116
Query: 187 MAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITS 246
+ P+ +L G V C GSP P W +T
Sbjct: 117 SKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNEL---------------PLTH 161
Query: 247 DGMNLLKIQNVSR------TAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGP 300
+ L + V C N S ++ + N P
Sbjct: 162 ETKKLYMVPYVDLEHQGTYW-------CHVYNDRDSQDSKKVEIIIDELNNLGH-----P 209
Query: 301 ANQT 304
N+
Sbjct: 210 DNKE 213
Score = 108 bits (271), Expect = 8e-27
Identities = 34/217 (15%), Positives = 56/217 (25%), Gaps = 35/217 (16%)
Query: 173 AVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIY 232
+ ++ V + P + G+ C G P W
Sbjct: 3 SSHHHHHHSSGLVPRGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNK----- 57
Query: 233 PGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLAR-ASLTVSGP--- 288
EI + + L V A + C N + ++ + L V
Sbjct: 58 ----------EIPNGNTSELIFNAVHVKDAGFYV-CRVNNNFTFEFSQWSQLDVCDIPES 106
Query: 289 -------DPNPPPVILFGPANQTLPLRSEARLRCQVRG--EGSVQWWRGEREVGSGPRVN 339
I P +Q L S L+C G QW++ E + +
Sbjct: 107 FQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETK-- 164
Query: 340 VTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASL 376
++ V E G Y C V + S
Sbjct: 165 ----KLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVE 197
Score = 95.7 bits (238), Expect = 2e-22
Identities = 24/107 (22%), Positives = 40/107 (37%), Gaps = 10/107 (9%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQ 66
+ V+P SQ++ G T +L+C G P P W KN P+ E K +
Sbjct: 120 QICVEPTSQKLMPGSTLVLQC-VAVGSPIPHYQWFKNELPLTHETKKLYM--------VP 170
Query: 67 DSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSA 113
G Y C V N +++S + + + P + +
Sbjct: 171 YVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNLGH-PDNKEQTT 216
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein,
serine/threonine-protein KI LIMB-girdle muscular
dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB:
2j8o_A 2ill_A
Length = 197
Score = 151 bits (383), Expect = 5e-42
Identities = 43/193 (22%), Positives = 67/193 (34%), Gaps = 15/193 (7%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN---L 63
F+ + ++ V A L C GHP+P + W + G I + K L
Sbjct: 6 HFKEELRNLNVRYQSNATLVC-KVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQL 64
Query: 64 AIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVK-----PYIIRGPKDTTVSASSIIV 118
I D YQ N G+ S A L V V P + G ++
Sbjct: 65 IIASVTDDDATVYQVRATNQGGSV-SGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVS 123
Query: 119 FECSVGGDAVLTVHWKRLGSAM-PEDRMSVLPSRS----LQLSDVRLEDAGEYVCEAENA 173
+ G + W++ + V+ +RS + + V +DAG YV A+N
Sbjct: 124 IKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNR 183
Query: 174 VGKISASATLTVQ 186
G + L V
Sbjct: 184 FGIDQKTVELDVA 196
Score = 137 bits (346), Expect = 4e-37
Identities = 41/205 (20%), Positives = 62/205 (30%), Gaps = 29/205 (14%)
Query: 98 VKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHW----KRLGSAMPEDRMSVLP--SR 151
+ P+ ++ V S C V G V W K + + + R+
Sbjct: 3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYH 62
Query: 152 SLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQM-----APIVRERPSDLRLEVGRDA 206
L ++ V +DA Y A N G +S +A+L V++ P E + G
Sbjct: 63 QLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVV 122
Query: 207 VFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSR------T 260
G P P W + LI Q +T +L+ V R
Sbjct: 123 SIKIPFSGKPDPVITWQKGQD--LIDNNGH---YQVIVTRSFTSLVFPNGVERKDAGFYV 177
Query: 261 AAPLIILCLGVNAAGSDLARASLTV 285
N G D L V
Sbjct: 178 -------VCAKNRFGIDQKTVELDV 195
Score = 134 bits (338), Expect = 6e-36
Identities = 43/197 (21%), Positives = 68/197 (34%), Gaps = 13/197 (6%)
Query: 187 MAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITS 246
MAP +E +L + +A +C + G P P W +G I IQ
Sbjct: 3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKE--IIADGLKYRIQ--EFK 58
Query: 247 DGMNLLKIQNVSRT-AAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTL 305
G + L I +V+ A + N GS ASL V P P L G
Sbjct: 59 GGYHQLIIASVTDDDAT--VYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHA 116
Query: 306 PLRSEARLRCQVRG--EGSVQWWRGEREVGSGPRVNVTGDGS----LVLTDVTKEDSGEY 359
++ G + + W +G+ + + V S + V ++D+G Y
Sbjct: 117 LRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFY 176
Query: 360 TCVVKSPHGSASWSASL 376
K+ G + L
Sbjct: 177 VVCAKNRFGIDQKTVEL 193
Score = 76.3 bits (188), Expect = 6e-16
Identities = 28/112 (25%), Positives = 45/112 (40%), Gaps = 8/112 (7%)
Query: 293 PPVILFGPANQTLPLRSEARLRCQVRG--EGSVQWWRGEREV---GSGPRVNVTGDG--S 345
P N + +S A L C+V G + V+W+R +E+ G R+ G
Sbjct: 4 APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQ 63
Query: 346 LVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNI-GFFRAPEPST 396
L++ VT +D+ Y + GS S +ASL E P ++
Sbjct: 64 LIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVH 115
Score = 28.5 bits (64), Expect = 8.2
Identities = 22/106 (20%), Positives = 32/106 (30%), Gaps = 37/106 (34%)
Query: 627 KPSNLRAVR----TLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVI----RTYQ 678
+ A+R +++ SG P PV + W+ + YQ
Sbjct: 110 GMGAVHALRGEVVSIKIPFSGKPD---PV--------ITWQ------KGQDLIDNNGHYQ 152
Query: 679 IIVGGGNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGT 724
+IV S + V AG Y V A NR G
Sbjct: 153 VIVTRSFTSLVFPNGVERK---------DAG-FYVVC--AKNRFGI 186
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-
like; 2.50A {Homo sapiens}
Length = 312
Score = 155 bits (392), Expect = 6e-42
Identities = 39/314 (12%), Positives = 98/314 (31%), Gaps = 42/314 (13%)
Query: 98 VKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED-RMSVLPS---RSL 153
+ P+ + + FEC W + + + R+ V +
Sbjct: 2 IDPFTKEVVVNVDDDGVISLNFECDKMTPKS-EFSWSKDYVSTEDSPRLEVESKGNKTKM 60
Query: 154 QLSDVRLEDAGEYVCEAENAVGKISASATLTVQM------------APIVRERPSDLR-L 200
D+ ++D G Y C+ + G S+ ++ + + + L
Sbjct: 61 TFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEIL 120
Query: 201 EVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRT 260
E G+ ++ + S ++ I+ G + + + + G+ + ++ +
Sbjct: 121 EKGQVRFWMQAEKLSGNAKVNYIFNE--KEIFEGPKY-KMHID-RNTGIIEMFMEKLQDE 176
Query: 261 -AAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFG-------------PANQTLP 306
+ ++ + L + +
Sbjct: 177 DEG--TYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVT 234
Query: 307 LRSEARLRCQVRG---EGSVQWWRGEREVGSGPRVNVTGD-GSLVLTDVTKEDSGEYTCV 362
L+C+V E + W++ ERE+ + + +L++T+ +K+D+G Y +
Sbjct: 235 GECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVI 294
Query: 363 VKSPHGSASWSASL 376
+K G L
Sbjct: 295 LKDDRGKDKSRLKL 308
Score = 155 bits (392), Expect = 7e-42
Identities = 45/321 (14%), Positives = 92/321 (28%), Gaps = 55/321 (17%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV---DGTNLA 64
+ + + EC + P+ W K+ E+S RL + + T +
Sbjct: 6 TKEVVVNVDDDGVISLNFEC--DKMTPKSEFSWSKDYVST--EDSPRLEVESKGNKTKMT 61
Query: 65 IQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVL-----------VKPYIIRGPKDTTVSA 113
+D D G Y C V + G S L ++ +
Sbjct: 62 FKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILE 121
Query: 114 SSIIVFECSV-GGDAVLTVHWKRLGSAMPED---RMSVLPS---RSLQLSDVRLEDAGEY 166
+ F V++ + E +M + + + + ++ ED G Y
Sbjct: 122 KGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTY 181
Query: 167 VCEAENAVGKISASATLTVQMAPIVRERPSDLRLEV------------------GRDAVF 208
+ ++ ++ L + +++ R E + +
Sbjct: 182 TFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLL 241
Query: 209 LCGIEGSPPPSTF-WMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRT-AAPLII 266
C + + W + I ++ D DG+ L I S+ A I
Sbjct: 242 KCKVANIKKETHIVWYKDER--EISVDEKHD------FKDGICTLLITEFSKKDAG--IY 291
Query: 267 LCLGVNAAGSDLARASLTVSG 287
+ + G D +R L
Sbjct: 292 EVILKDDRGKDKSRLKLVDEA 312
Score = 94.7 bits (235), Expect = 3e-21
Identities = 31/243 (12%), Positives = 68/243 (27%), Gaps = 27/243 (11%)
Query: 187 MAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITS 246
+ P +E ++ + F C + +P W + R+ E+ S
Sbjct: 2 IDPFTKEVVVNVDDDGVISLNFEC-DKMTPKSEFSWSKDYV--STEDSPRL-----EVES 53
Query: 247 DG-MNLLKIQNVSRT-AAPLIILCLGVNAAGSDLARASLTVS-------GPDPNPPPVIL 297
G + +++ I C + G + + P V +
Sbjct: 54 KGNKTKMTFKDLGMDDLG--IYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPV 111
Query: 298 FGPANQTLPLRSEARLRCQV---RGEGSVQWWRGEREVGSGPRVNVTGDG-----SLVLT 349
+ + + R Q G V + E+E+ GP+ + D + +
Sbjct: 112 KSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFME 171
Query: 350 DVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQ 409
+ ED G YT ++ + + L + + P ++
Sbjct: 172 KLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSW 231
Query: 410 TAN 412
Sbjct: 232 EVT 234
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI
cardiomyopathy, disease mutation, disulfide bond,
immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Length = 197
Score = 149 bits (377), Expect = 4e-41
Identities = 37/191 (19%), Positives = 71/191 (37%), Gaps = 15/191 (7%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV---DGTNL 63
R + K G+ A L C G P P + W + G + S++ ++ L
Sbjct: 9 GIRKEMKDVTTKLGEAAQLSC-QIVGRPLPDIKWYRFGKEL--IQSRKYKMSSDGRTHTL 65
Query: 64 AIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRG---PKDTTVSASSIIVFE 120
+ + D+G Y C+ N G E++ + L + P G + + S +
Sbjct: 66 TVMTEEQEDEGVYTCIATNEVGEVETS-SKLLLQATPQFHPGYPLKEKYYGAVGSTLRLH 124
Query: 121 CSVGGDAVLTVHWKRLGSAMPE-DRMSVLPS---RSLQLSDV-RLEDAGEYVCEAENAVG 175
G V + W + + +++ + L + +V R AG+Y + N G
Sbjct: 125 VMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFG 184
Query: 176 KISASATLTVQ 186
+ A + +Q
Sbjct: 185 TVDAILDVEIQ 195
Score = 132 bits (334), Expect = 2e-35
Identities = 42/202 (20%), Positives = 64/202 (31%), Gaps = 29/202 (14%)
Query: 99 KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDR---MSVLPSR-SLQ 154
P I + KD T C + G + + W R G + + R MS +L
Sbjct: 7 APGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLT 66
Query: 155 LSDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRER---PSDLRLEVGRDAVFLCG 211
+ ED G Y C A N VG++ S+ L +Q P VG
Sbjct: 67 VMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVM 126
Query: 212 IEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDG-MNLLKIQNVSR-------TAAP 263
G P P+ W L+ + + I + L ++NV R
Sbjct: 127 YIGRPVPAMTWFHGQ--KLLQNSENI-----TIENTEHYTHLVMKNVQRKTHAGKYK--- 176
Query: 264 LIILCLGVNAAGSDLARASLTV 285
N G+ A + +
Sbjct: 177 ----VQLSNVFGTVDAILDVEI 194
Score = 118 bits (298), Expect = 1e-30
Identities = 35/197 (17%), Positives = 72/197 (36%), Gaps = 19/197 (9%)
Query: 188 APIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSD 247
AP +R+ D+ ++G A C I G P P W G + + +++SD
Sbjct: 7 APGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGK--ELIQSRKY-----KMSSD 59
Query: 248 G-MNLLKIQNVSRT-AAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTL 305
G + L + + + C+ N G + L + P L
Sbjct: 60 GRTHTLTVMTEEQEDEG--VYTCIATNEVGEVETSSKLLLQATPQFHPGYPL--KEKYYG 115
Query: 306 PLRSEARLRCQVRG--EGSVQWWRGEREVGSGPRVNVTGDG---SLVLTDVTKE-DSGEY 359
+ S RL G ++ W+ G++ + + + + LV+ +V ++ +G+Y
Sbjct: 116 AVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKY 175
Query: 360 TCVVKSPHGSASWSASL 376
+ + G+ +
Sbjct: 176 KVQLSNVFGTVDAILDV 192
Score = 83.2 bits (206), Expect = 2e-18
Identities = 29/120 (24%), Positives = 49/120 (40%), Gaps = 17/120 (14%)
Query: 293 PPVILFGPANQTLPLRSEARLRCQVRG--EGSVQWWRGEREVGSGPRVNVTGDG---SLV 347
P I + T L A+L CQ+ G ++W+R +E+ + ++ DG +L
Sbjct: 7 APGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLT 66
Query: 348 LTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLV 407
+ +ED G YTC+ + G S+ L ++ P +PG P K
Sbjct: 67 VMTEEQEDEGVYTCIATNEVGEVETSSKLLLQAT------------PQFHPGYPLKEKYY 114
Score = 82.0 bits (203), Expect = 7e-18
Identities = 22/98 (22%), Positives = 40/98 (40%), Gaps = 8/98 (8%)
Query: 6 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV---DGTN 62
+ A G T L G P P + W + +NS+ + + T+
Sbjct: 104 HPGYPLKEKYYGAVGSTLRLHV-MYIGRPVPAMTWFHGQKLL--QNSENITIENTEHYTH 160
Query: 63 LAIQD-SRKTDDGRYQCVVKNVAGTRESTDAVLRVLVK 99
L +++ RKT G+Y+ + NV GT ++ + + K
Sbjct: 161 LVMKNVQRKTHAGKYKVQLSNVFGTVDAI-LDVEIQDK 197
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB:
2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 148 bits (376), Expect = 6e-41
Identities = 51/201 (25%), Positives = 75/201 (37%), Gaps = 20/201 (9%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN--LA 64
F P Q +G A C G P P +VW K G + + + + DG+ L
Sbjct: 8 RFTRTPVDQTGVSGGVASFICQA-TGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLR 66
Query: 65 IQDSRKTDD-GRYQCVVKNVAGTRESTDAVLRVLVK-------PYIIRGPKDTTVSASSI 116
IQ R D Y+CV N G S L VL + P I GP+ V +
Sbjct: 67 IQPLRTPRDEAIYECVASNNVGEI-SVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRT 125
Query: 117 IVFECSVGGDAVLTVHWKRLGSAMPED-------RMSVLPSRSLQLSDVRLEDAGEYVCE 169
C+ G+ + W + + ++ +LQ+ D G+Y C
Sbjct: 126 ATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECV 185
Query: 170 AENAVG-KISASATLTVQMAP 189
A N+ G + SA A L V+
Sbjct: 186 ATNSAGTRYSAPANLYVRGTK 206
Score = 134 bits (339), Expect = 6e-36
Identities = 52/217 (23%), Positives = 80/217 (36%), Gaps = 30/217 (13%)
Query: 96 VLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLP-----S 150
P R P D T + + F C GD + W + G + R V+
Sbjct: 3 GETPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSG 62
Query: 151 RSLQLSDVRL-EDAGEYVCEAENAVGKISASATLTVQM-------APIVRERPSDLRLEV 202
L++ +R D Y C A N VG+IS S LTV P + P +E
Sbjct: 63 SVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVER 122
Query: 203 GRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSR--- 259
R A LC G+P P W + + + I+ ++ S+ + L+I+
Sbjct: 123 TRTATMLCAASGNPDPEITWFKDFLP--VDTSNNNGRIK-QLRSESIGALQIEQSEESDQ 179
Query: 260 ---TAAPLIILCLGVNAAGSDL-ARASLTVSGPDPNP 292
C+ N+AG+ A A+L V G +
Sbjct: 180 GKYE-------CVATNSAGTRYSAPANLYVRGTKHHH 209
Score = 127 bits (321), Expect = 2e-33
Identities = 46/209 (22%), Positives = 73/209 (34%), Gaps = 16/209 (7%)
Query: 184 TVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAE 243
T + P P D G A F+C G P P W +G + + E
Sbjct: 2 TGETPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKK--VSNQRF---EVIE 56
Query: 244 ITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPD--PNPPPVILFGPA 301
++L+IQ + I C+ N G LTV D P P I GP
Sbjct: 57 FDDGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQ 116
Query: 302 NQTLPLRSEARLRCQVRG--EGSVQWWRGEREVGSGP------RVNVTGDGSLVLTDVTK 353
+ + A + C G + + W++ V + ++ G+L + +
Sbjct: 117 LKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEE 176
Query: 354 EDSGEYTCVVKSPHGSA-SWSASLRFESP 381
D G+Y CV + G+ S A+L
Sbjct: 177 SDQGKYECVATNSAGTRYSAPANLYVRGT 205
Score = 106 bits (265), Expect = 5e-26
Identities = 33/99 (33%), Positives = 50/99 (50%), Gaps = 5/99 (5%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENS----KRLRLVDGTN 62
+ P+ + V TA + C G+P+P + W K+ P+D N+ K+LR
Sbjct: 110 TIDMGPQLKVVERTRTATMLC-AASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGA 168
Query: 63 LAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPY 101
L I+ S ++D G+Y+CV N AGTR S A L V +
Sbjct: 169 LQIEQSEESDQGKYECVATNSAGTRYSAPANLYVRGTKH 207
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 145 bits (367), Expect = 1e-39
Identities = 39/201 (19%), Positives = 61/201 (30%), Gaps = 23/201 (11%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFE---------NSKRLRLV 58
R+ + L C G P + WK + + +
Sbjct: 7 VHSSEPEVRIPENNPVKLSC-AYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTF 65
Query: 59 DGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAV-LRVLVKPYIIRGPKDTTVSASSII 117
T + + + D G Y C+V G V L VLV P ++ + +
Sbjct: 66 LPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRA 125
Query: 118 VFECSV-GGDAVLTVHWKRLGSAMPED-----------RMSVLPSRSLQLSDVRLEDAGE 165
V CS G W + G MP + + + L + D GE
Sbjct: 126 VLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGE 185
Query: 166 YVCEAENAVGKISASATLTVQ 186
Y CEA N G S + ++
Sbjct: 186 YSCEARNGYGTPMTSNAVRME 206
Score = 116 bits (292), Expect = 1e-29
Identities = 36/214 (16%), Positives = 62/214 (28%), Gaps = 31/214 (14%)
Query: 99 KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMP-------------EDRM 145
+ + + ++ + C+ G + V WK EDR+
Sbjct: 4 SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRV 63
Query: 146 SVLPSRSLQLSDVRLEDAGEYVCEAENAVGKI--SASATLTVQMAPIVRERPSDLRLEVG 203
+ LP+ + V ED G Y C G L V + P +G
Sbjct: 64 TFLPT-GITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIG 122
Query: 204 RDAVFLCGI-EGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMN-LLKIQNVSR-- 259
AV C +GSPP W +G P + + L +S
Sbjct: 123 NRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASD 182
Query: 260 ----TAAPLIILCLGVNAAGSDLARASLTVSGPD 289
+ C N G+ + ++ + +
Sbjct: 183 TGEYS-------CEARNGYGTPMTSNAVRMEAVE 209
Score = 107 bits (268), Expect = 1e-26
Identities = 32/206 (15%), Positives = 71/206 (34%), Gaps = 21/206 (10%)
Query: 188 APIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNR--SLIYPGDRVDNIQAEIT 245
+ V ++R+ C G P W + L+ +++ +
Sbjct: 4 SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRV 63
Query: 246 SDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTL 305
+ + ++V+R C+ G+ + + PP +
Sbjct: 64 TFLPTGITFKSVTREDTG-TYTCMVSEEGGNSYGEVKVKLIV---LVPPSKPTVNIPSSA 119
Query: 306 PLRSEARLRCQVRGEGS----VQWWRGEREVGSGPR----------VNVTGDGSLVLTDV 351
+ + A L C + +GS W++ + + P+ V G LV +
Sbjct: 120 TIGNRAVLTCSEQ-DGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPL 178
Query: 352 TKEDSGEYTCVVKSPHGSASWSASLR 377
+ D+GEY+C ++ +G+ S ++R
Sbjct: 179 SASDTGEYSCEARNGYGTPMTSNAVR 204
Score = 87.7 bits (217), Expect = 1e-19
Identities = 21/98 (21%), Positives = 32/98 (32%), Gaps = 9/98 (9%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPID--------FENSKRLRLV 58
G+ A+L C G P W K+G + F NS +
Sbjct: 109 SKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNP 168
Query: 59 DGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRV 96
L +D G Y C +N GT ++ +R+
Sbjct: 169 TTGELVFDPLSASDTGEYSCEARNGYGTPMTS-NAVRM 205
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
coxsackievirus A21, cryo-electron
microscopy,virus-receptor complex, icosahedral virus;
HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3
b.1.1.4 b.1.1.4 b.1.1.4
Length = 450
Score = 150 bits (379), Expect = 6e-39
Identities = 59/399 (14%), Positives = 95/399 (23%), Gaps = 58/399 (14%)
Query: 6 EEFRVQPKSQRVAAGDTALLECGPPRGHPEP--TLVWKKNGHPIDFENSKRLRLVDGTNL 63
E + P G L C G P T+V + + E +
Sbjct: 87 ERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPA--EVTT 144
Query: 64 AIQDSRKTDDGRYQCVVKNVAGTRE-------STDAVLRVLVKPYIIRGP-KDTTVSASS 115
+ R + C + + S L+ V P + +
Sbjct: 145 TVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDT 204
Query: 116 IIVFECSVGGD---AVLTVHWKRLGSAM-PEDRMSVLPSRSLQLSDVRLEDAGEY--VCE 169
CS+ G + VH + P + V ED G C
Sbjct: 205 QGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCA 264
Query: 170 AENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRS 229
T+T+ P + + G + C + +
Sbjct: 265 VILGNQSQETLQTVTIYSFPAPNVILTKPEVSEGTEVTVKCEAHPRAKVTLNGVPAQP-- 322
Query: 230 LIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDL----ARASLTV 285
G R L ++ C L L V
Sbjct: 323 ---LGPRAQ-------------LLLKATPEDNGRSFS-CSATLEVAGQLIHKNQTRELRV 365
Query: 286 SGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG--EGSVQWWR-GEREVGSGPRVNVTG 342
P P N T P S+ CQ G ++ + G + G
Sbjct: 366 LYG---PRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIG------- 415
Query: 343 DGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESP 381
VT++ G Y C +S G + ++ SP
Sbjct: 416 ----ESVTVTRDLEGTYLCRARSTQGEVTREVTVNVLSP 450
Score = 127 bits (320), Expect = 3e-31
Identities = 65/454 (14%), Positives = 115/454 (25%), Gaps = 60/454 (13%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQ 66
+ V P + G + L+ C L + K L L +
Sbjct: 1 QTSVSPSKVILPRGGSVLVTCST-SCDQPMLLGIET------PLPKKELLLPGNNRKVYE 53
Query: 67 DSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIR-GPKDTTVSASSIIVFECSVGG 125
S +D + C G + L V P + P + + C V G
Sbjct: 54 LSNVQEDSQPMCYSNCPDGQSTAK-TFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEG 112
Query: 126 ---DAVLTVHWKRLGSAMP-EDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVG------ 175
A LTV R + E + + + R + C E +
Sbjct: 113 GAPRANLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLEL 172
Query: 176 --KISASATLTVQMAPIVRERPS-DLRLEVGRDAVFLCGIEGSPPPST---FWMLEGNRS 229
SA L + P + LEV +C ++G P S L R
Sbjct: 173 FENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRL 232
Query: 230 LIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPD 289
D+ A+ + + + + C + S ++T+
Sbjct: 233 NPTVTYGNDSFSAKAS--------VSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSF- 283
Query: 290 PNPPPVILFGPANQTLPLRSEARLRCQVRGEGSVQWWRGEREVGSGPRVNVTGDGSLVLT 349
P P ++ + +E ++C+ V G GPR L+L
Sbjct: 284 --PAPNVI--LTKPEVSEGTEVTVKCEAHPRAKVTLN-GVPAQPLGPRA------QLLLK 332
Query: 350 DVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQ 409
+++ ++C + E + P P N
Sbjct: 333 ATPEDNGRSFSCSATLEVAGQLIHKNQTRE------LRVLYGPRLDERDCPGNWTWPENS 386
Query: 410 TAN---------GLTLAWSRNNQIGSSSLLGYQV 434
L ++ V
Sbjct: 387 QQTPMCQAWGNPLPELKCLKDGTFPLPIGESVTV 420
Score = 81.5 bits (200), Expect = 3e-16
Identities = 47/306 (15%), Positives = 81/306 (26%), Gaps = 33/306 (10%)
Query: 191 VRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMN 250
PS + L G + C P + E+ G N
Sbjct: 2 TSVSPSKVILPRGGSVLVTCSTSCDQPMLLGI-------------ETPLPKKELLLPGNN 48
Query: 251 LLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSE 310
+ + +C G A+ LTV P + P P+
Sbjct: 49 RKVYELSNVQED-SQPMCYSNCPDGQSTAKTFLTV----YWTPERVELAPLPSWQPVGKN 103
Query: 311 ARLRCQVRG-----EGSVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKS 365
LRCQV G +V RGE+E+ P V + + + ++C +
Sbjct: 104 LTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTEL 163
Query: 366 PHGSASWSASLRFESPTNPNIGFFRAPEPS---TYPGPPTKPTLVNQTANGL------TL 416
+P A P V + +GL +
Sbjct: 164 DLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQV 223
Query: 417 AWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVGL 476
+ +Q + ++ Y + +S S + D T T+ +T+
Sbjct: 224 HLALGDQRLNPTVT-YGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYS 282
Query: 477 TYTFLV 482
V
Sbjct: 283 FPAPNV 288
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus,
picornavirus, virus/receptor complex; 15.00A {Homo
sapiens} SCOP: i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 145 bits (366), Expect = 2e-38
Identities = 49/307 (15%), Positives = 88/307 (28%), Gaps = 41/307 (13%)
Query: 102 IIRGPKDTTVSASSIIVFECSVGG-----DAVLTVHWKRLGSAM--------------PE 142
+++ P + C + V + W R G +
Sbjct: 3 VVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSES 62
Query: 143 DRMSVLPSR--------SLQLSDVRLEDAGEYVCEAENAV-GKISASATLTVQMAPIVRE 193
R+ + +R SL++ +R+ED G Y C G S L V P
Sbjct: 63 KRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTA 122
Query: 194 RPSDLRLEVGRDAVFLCG-IEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLL 252
++L + C G PP W + P T +L
Sbjct: 123 EVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGG---MPNTSQVPGFLSGTVTVTSLW 179
Query: 253 KIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEAR 312
+ S+ + C + + ++ ++ P + G N ++EA
Sbjct: 180 ILVPSSQVDGKNVT-CKVEHESFEKPQLLTVNLTVYYPPEVSIS--GYDNNWYLGQNEAT 236
Query: 313 LRCQVRGE---GSVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGS 369
L C R W + P V L++ V K + C V + G+
Sbjct: 237 LTCDARSNPEPTGYNWSTTMGPL---PPFAVAQGAQLLIRPVDKPINTTLICNVTNALGA 293
Query: 370 ASWSASL 376
++
Sbjct: 294 RQAELTV 300
Score = 141 bits (355), Expect = 4e-37
Identities = 57/313 (18%), Positives = 91/313 (29%), Gaps = 48/313 (15%)
Query: 8 FRVQPKSQRVAAGDTALLEC---GPPRGHPEPTLV-WKKNGHPID-----------FENS 52
P GD+ L C P + + W ++G + S
Sbjct: 3 VVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSES 62
Query: 53 KRLRLVDG--------TNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIR 104
KRL V +L + R D+G Y C+ S D LRVL KP
Sbjct: 63 KRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTA 122
Query: 105 GPKDTTVSASSIIVFEC-SVGGDAVLTVHWKRLGSAMPEDRMSVLPSR-------SLQLS 156
+ ++ + + C S GG + W MP L
Sbjct: 123 EVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILV 182
Query: 157 DVRLEDAGEYVCEAENAVGK--ISASATLTVQMA-PIVRERPSDLRLEVGRDAVFLCGIE 213
D C+ E+ + + LTV + + +A C
Sbjct: 183 PSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCDAR 242
Query: 214 GSPPPSTF-WMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVN 272
+P P+ + W + + G L I+ V + +I C N
Sbjct: 243 SNPEPTGYNWSTTMGP-----------LPPFAVAQG-AQLLIRPVDKPINTTLI-CNVTN 289
Query: 273 AAGSDLARASLTV 285
A G+ A ++ V
Sbjct: 290 ALGARQAELTVQV 302
Score = 137 bits (345), Expect = 8e-36
Identities = 28/187 (14%), Positives = 55/187 (29%), Gaps = 11/187 (5%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGT----- 61
+ + + ++ + C G P + W + + S+ + GT
Sbjct: 119 QNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMP-NTSQVPGFLSGTVTVTS 177
Query: 62 NLAIQDSRKTDDGRYQCVVKNVAGTRE-STDAVLRVLVK-PYIIRGPKDTTVSASSIIVF 119
+ S + D C V++ + + L V I G + +
Sbjct: 178 LWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATL 237
Query: 120 ECSVGGD-AVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKIS 178
C + +W +P +V L + V +C NA+G
Sbjct: 238 TCDARSNPEPTGYNWSTTMGPLPPF--AVAQGAQLLIRPVDKPINTTLICNVTNALGARQ 295
Query: 179 ASATLTV 185
A T+ V
Sbjct: 296 AELTVQV 302
Score = 69.4 bits (169), Expect = 9e-13
Identities = 27/215 (12%), Positives = 49/215 (22%), Gaps = 32/215 (14%)
Query: 189 PIVRERPSDLRLEVGRDAVFLCGIEGSPPPST-----FWMLEGNRSLIYPGDRVDNIQAE 243
+V+ P+ + +G C ++ T W G + +
Sbjct: 2 VVVQA-PTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYS 60
Query: 244 ITSDGMNLLKIQNVSRTAAPLII-----------LC-LGVNAAGSDLARASLTVSGPDPN 291
+ + A L + C GS L V
Sbjct: 61 ESKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRV-----L 115
Query: 292 PPPVILFGPANQTLPLRSEARLRCQVRG---EGSVQWWRGEREVGSGPRVNVTGDG---- 344
P L RC G + W + + +V G
Sbjct: 116 AKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTV 175
Query: 345 --SLVLTDVTKEDSGEYTCVVKSPHGSASWSASLR 377
+L ++ D TC V+ ++
Sbjct: 176 TSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVN 210
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 144 bits (364), Expect = 6e-38
Identities = 49/331 (14%), Positives = 92/331 (27%), Gaps = 47/331 (14%)
Query: 6 EEFRVQPKSQ-RVAAGDTALLECG----------PPRGHPEPTLVWKKNGHPIDFENSKR 54
+++ + Q +V + A ++C TL+W D E
Sbjct: 7 DDWGLDTMRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPIN 66
Query: 55 LRL------VDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKP----YIIR 104
RL + L + + D G Y C+++N + L V+ K ++
Sbjct: 67 FRLPENRISKEKDVLWFRPTLLNDTGNYTCMLRNTTYCSKVA-FPLEVVQKDSCFNSPMK 125
Query: 105 GPKDTTVSASSIIVFEC-----SVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVR 159
P I C T+ W + + +L
Sbjct: 126 LPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVIPEGMNLSFLIAL 185
Query: 160 LEDAGEYVCEA----ENAVGKISASATLTVQMAPIVRERP--------SDLRLEVGRDAV 207
+ + G Y C ++ + T+ V +P P E G + +
Sbjct: 186 ISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELL 245
Query: 208 FLC----GIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMN----LLKIQNVSR 259
C +W ++G + D N + +L I+ V+
Sbjct: 246 IPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTS 305
Query: 260 TAAPLIILCLGVNAAGSDLARASLTVSGPDP 290
+C +A G A + P P
Sbjct: 306 EDLKRSYVCHARSAKGEVAKAAKVKQKVPAP 336
Score = 121 bits (305), Expect = 4e-30
Identities = 51/318 (16%), Positives = 81/318 (25%), Gaps = 64/318 (20%)
Query: 114 SSIIVFECSVGGDAVLTVHWKRLGS----------AMPEDRMSVLPSRSLQLSDVRLEDA 163
+ F S A LT+ W +PE+R+S L L D
Sbjct: 33 EHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISK-EKDVLWFRPTLLNDT 91
Query: 164 GEYVCEAENAVGKISASATLTVQMAPIV----RERPSDLRLEVGRDAVFLCG-----IEG 214
G Y C N + L V + P C
Sbjct: 92 GNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPS 151
Query: 215 SPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRT-------AAPLIIL 267
S P+ W + I + + +GMNL +
Sbjct: 152 SVKPTITWYMGCY--KIQNFNN-------VIPEGMNLS-FLIALISNNGNYTCVVTYPEN 201
Query: 268 CLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTL---PLRSEARLRCQVRGEGS-- 322
++ V G N P ++ P + + E + C V
Sbjct: 202 ----GRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMD 257
Query: 323 ----VQWWRGEREVGSGPR-------------VNVTGDGSLVLTDVTKED-SGEYTCVVK 364
V W ++ + T L + VT ED Y C +
Sbjct: 258 SRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHAR 317
Query: 365 SPHGSASWSASLRFESPT 382
S G + +A ++ + P
Sbjct: 318 SAKGEVAKAAKVKQKVPA 335
Score = 79.1 bits (194), Expect = 9e-16
Identities = 44/317 (13%), Positives = 86/317 (27%), Gaps = 56/317 (17%)
Query: 202 VGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSR-- 259
F S + W + + I+ + ++L +
Sbjct: 32 FEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEK-DVLWFRPTLLND 90
Query: 260 ----TAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRC 315
T C+ N L V D + P ++ R+ C
Sbjct: 91 TGNYT-------CMLRNTTYCSKVAFPLEVVQKDSCFNSPMKL-PVHKLYIEYGIQRITC 142
Query: 316 -----QVRG--EGSVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHG 368
+ ++ W+ G ++ + V G +L ++G YTCVV P
Sbjct: 143 PNVDGYFPSSVKPTITWYMGCYKIQNFNNVIPEG-MNLSFLIALISNNGNYTCVVTYPEN 201
Query: 369 SASWSASLRF-----ESPTNPNIGFFRAP-EPSTYPGPPTKPTLVNQTANGLTLA----- 417
++ + SP N +P + Y P + L+ T L
Sbjct: 202 GRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNE 261
Query: 418 --WSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTV- 474
W+ + + + + S +T T L++ +T
Sbjct: 262 VWWTIDGKKPDDI---TIDVTINESISHSRTEDETRTQI------------LSIKKVTSE 306
Query: 475 --GLTYTFLVRALNSHG 489
+Y A ++ G
Sbjct: 307 DLKRSYV--CHARSAKG 321
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein
complex, growth factor-receptor complex, TRA hormone
complex; HET: NDG NAG; 2.30A {Homo sapiens}
Length = 289
Score = 140 bits (353), Expect = 5e-37
Identities = 36/278 (12%), Positives = 82/278 (29%), Gaps = 22/278 (7%)
Query: 17 VAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRY 76
+ T +L C G +VW++ E +K + L + + D G Y
Sbjct: 12 LNVSSTFVLTC---SGSAP--VVWERMSQEPPQEMAKAQDGTFSSVLTLTNLTGLDTGEY 66
Query: 77 QCVVKNVAGTRESTDAVLRVLVK----PYIIRGPKDTTVSAS--SIIVFECSVGGDAVLT 130
C + G L + V ++ ++ + + + I C V D L
Sbjct: 67 FCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRV-TDPQLV 125
Query: 131 VHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMA-- 188
V + Q + + Y+C+ ++ + A ++
Sbjct: 126 VTLHEKKGDVALPV-----PYDHQRGFSGIFEDRSYICKTTIGDREVDSDAYYVYRLQVS 180
Query: 189 -PIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSD 247
V + G + +C + G+ + W S + V + ++
Sbjct: 181 SINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGR-LVEPVTDFLLDMPYH 239
Query: 248 GMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTV 285
++L I + + C + ++ +
Sbjct: 240 IRSILHIPSAELEDSGTYT-CNVTESVNDHQDEKAINI 276
Score = 118 bits (296), Expect = 2e-29
Identities = 44/297 (14%), Positives = 80/297 (26%), Gaps = 44/297 (14%)
Query: 102 IIRGPKDT-TVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSV---LPSRSLQLSD 157
++ P ++ SS V CS V W+R+ P++ S L L++
Sbjct: 2 VVTPPGPELVLNVSSTFVLTCSGSA----PVVWERMSQEPPQEMAKAQDGTFSSVLTLTN 57
Query: 158 VRLEDAGEYVCEAENAVGKISASATLT-----VQMAPIVRERPSDLRLEV--GRDAVFLC 210
+ D GEY C ++ G + + +L + + + C
Sbjct: 58 LTGLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPC 117
Query: 211 GIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLG 270
+ T +G+ +L + D R+ +C
Sbjct: 118 RVTDPQLVVTLHEKKGDVAL------------PVPYDHQRGFSGIFEDRS-----YICKT 160
Query: 271 VNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRGEG--SVQWWRG 328
+ A + + L C V G + +W
Sbjct: 161 TIGDREVDSDAYYVYR--LQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYP 218
Query: 329 EREVGSG--------PRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLR 377
+E G + L + EDSG YTC V ++
Sbjct: 219 RKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAIN 275
Score = 107 bits (267), Expect = 1e-25
Identities = 27/190 (14%), Positives = 45/190 (23%), Gaps = 25/190 (13%)
Query: 17 VAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRY 76
+ + C P+ + + + + S +D Y
Sbjct: 107 LTEITEITIPCRV--TDPQLVVTLHEKKGDVALPVPYDHQ--------RGFSGIFEDRSY 156
Query: 77 QCVVKNVAGTRESTDAVLRVLV--KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWK 134
C +S + L + T V I C V G+ V+ W
Sbjct: 157 ICKTTIGDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWT 216
Query: 135 RLGSAM---------PEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTV 185
M L + LED+G Y C +V + +
Sbjct: 217 YPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINI 276
Query: 186 QMAPIVRERP 195
V E
Sbjct: 277 T----VVESG 282
Score = 60.9 bits (147), Expect = 5e-10
Identities = 16/103 (15%), Positives = 25/103 (24%), Gaps = 8/103 (7%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN---- 62
V V G+ L C G+ W +
Sbjct: 183 NVSVNAVQTVVRQGENITLMC-IVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIR 241
Query: 63 --LAIQDSRKTDDGRYQCVVKNVAGTRESTDAV-LRVLVKPYI 102
L I + D G Y C V + A+ + V+ +
Sbjct: 242 SILHIPSAELEDSGTYTCNVTESVNDHQDEKAINITVVESGHH 284
Score = 55.5 bits (133), Expect = 3e-08
Identities = 23/97 (23%), Positives = 32/97 (32%), Gaps = 4/97 (4%)
Query: 302 NQTLPLRSEARLRCQVRGEGSVQWWRGEREVGSGPRVNVTG--DGSLVLTDVTKEDSGEY 359
L + S L C G V W R +E G L LT++T D+GEY
Sbjct: 9 ELVLNVSSTFVLTC--SGSAPVVWERMSQEPPQEMAKAQDGTFSSVLTLTNLTGLDTGEY 66
Query: 360 TCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPST 396
C G + + +P +GF
Sbjct: 67 FCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEEL 103
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody,
immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S
3cm9_S 3chn_J 3cm9_J
Length = 585
Score = 145 bits (365), Expect = 2e-36
Identities = 86/549 (15%), Positives = 148/549 (26%), Gaps = 97/549 (17%)
Query: 12 PKSQRVAAGDTALLEC--GPPRGHPEPTLVWKKNG------------HPIDFENSKRLRL 57
P+ G++ + C P + W + G + + + R L
Sbjct: 7 PEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANL 66
Query: 58 VDGTN-----LAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVS 112
+ + I + D GRY+C + S D L V P ++ K TV
Sbjct: 67 TNFPENGTFVVNIAQLSQDDSGRYKCGLGI-NSRGLSFDVSLEVSQGPGLLNDTKVYTVD 125
Query: 113 ASSIIVFECSV---------------GGDAVLTVHWKRLGSAMPEDRMSVLPSRS----- 152
+ C G VL + + R+ + +
Sbjct: 126 LGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLF 185
Query: 153 -LQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERPS---------DLRLEV 202
+ ++ +RL DAG+Y+C+A + +A L V L EV
Sbjct: 186 SVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDLRGSVTFHCALGPEV 245
Query: 203 GRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAA 262
A FLC G R+ + G R+ + DG + I + + A
Sbjct: 246 ANVAKFLCRQSSGENCDVVVNTLGKRAPAFEG-RI--LLNPQDKDGSFSVVITGLRKEDA 302
Query: 263 PLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG--E 320
LC + N I P S + C
Sbjct: 303 G-RYLCGAHSDGQLQEGSPIQA-WQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKES 360
Query: 321 GSVQWW-----------------RGEREVGSGPRVNVTGDGS-----LVLTDVTKEDSGE 358
S+++W G + R+++ + ++L +T D+G
Sbjct: 361 KSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGF 420
Query: 359 YTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTK-PTLVNQTANGLTLA 417
Y C+ + E N + G K P +
Sbjct: 421 YWCLTNGDTLWRTTVEIKIIEGEPN----LKVPGNVTAVLGETLKVPCHFPCKFSSYEKY 476
Query: 418 WSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATAT------------WVRVATNVPSP 465
W + N G L Q E S+ + + + T W V
Sbjct: 477 WCKWNNTG-CQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFYG 535
Query: 466 ILTVTNLTV 474
+ V
Sbjct: 536 ETAAVYVAV 544
Score = 139 bits (351), Expect = 1e-34
Identities = 75/454 (16%), Positives = 130/454 (28%), Gaps = 59/454 (12%)
Query: 8 FRVQPKSQRVAAGDTALLECG-PPRGHPEPTLVWKKNGHPI------------DFENSKR 54
K V G T + C + ++K+ G ++ R
Sbjct: 115 LLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIR 174
Query: 55 LRLVDGTN----LAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTT 110
L + + I R +D G+Y C + + + + + + +P ++ +
Sbjct: 175 LDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDLRGS 234
Query: 111 VS--------ASSIIVFECSVGGDAVLTVHWKRLGSAMP--EDRMSVLPSR-----SLQL 155
V+ +++ F C V LG P E R+ + P S+ +
Sbjct: 235 VTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVI 294
Query: 156 SDVRLEDAGEYVCEAENAVGKISASATLT----VQMAPIVRERPSDLRLEVGRDAVFLCG 211
+ +R EDAG Y+C A + S V + P+ ++ G LC
Sbjct: 295 TGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCP 354
Query: 212 IEGSPPPS-TFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLG 270
S +W L VD+ L ++ +I+ L
Sbjct: 355 YNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLT 414
Query: 271 VNAAGS-----DLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRGEGS--- 322
AG + T L P N T L ++ C + S
Sbjct: 415 SRDAGFYWCLTNGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCHFPCKFSSYE 474
Query: 323 VQWWRGER---------EVGSGPRVNVTGDG----SLVLTDVTKEDSGEYTCVVKSPH-G 368
W + + G + SL L VT+ D G Y C VK H
Sbjct: 475 KYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFY 534
Query: 369 SASWSASLRFESPTNPNIGFFRAPEPSTYPGPPT 402
+ + + E + P
Sbjct: 535 GETAAVYVAVEERKAAGSRDVSLAKADAAPDEKV 568
Score = 107 bits (266), Expect = 5e-24
Identities = 52/342 (15%), Positives = 104/342 (30%), Gaps = 57/342 (16%)
Query: 103 IRGPKDTTVSASSIIVFECSV---GGDAVLTVHWKRLG---------------SAMPEDR 144
I GP++ + + C + +W R G S+ R
Sbjct: 4 IFGPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGR 63
Query: 145 MSVLPSR-----SLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERPSDLR 199
++ + ++ + +D+G Y C +S +L V P +
Sbjct: 64 ANLTNFPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGPGLLNDTKVYT 123
Query: 200 LEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNL-LKIQNVS 258
+++GR C + + + +YP +D+ + + L IQ
Sbjct: 124 VDLGRTVTINCPFKTENAQKRKSLYKQIG--LYPVLVIDSSGYVNPNYTGRIRLDIQGTG 181
Query: 259 RTAAPLII-----------LCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPL 307
+ ++I LC + + S P P +++ ++
Sbjct: 182 QLLFSVVINQLRLSDAGQYLCQAGDDSNS----NKKNADLQVLKPEPELVYEDLRGSVTF 237
Query: 308 R--------SEARLRCQVRGEG--SVQWWR-GEREVGSGPRVNVTGDG-----SLVLTDV 351
+ A+ C+ V G+R R+ + S+V+T +
Sbjct: 238 HCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGL 297
Query: 352 TKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPE 393
KED+G Y C S S ++ N R+P
Sbjct: 298 RKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPT 339
Score = 58.9 bits (141), Expect = 5e-09
Identities = 23/127 (18%), Positives = 41/127 (32%), Gaps = 13/127 (10%)
Query: 8 FRVQPKSQRVAAGDTALLECGPP---RGHPEPTLVWKKNGHPI----DFENSKRLRLVDG 60
P + G+T + C P + + W G D SK D
Sbjct: 445 NLKVPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDE 504
Query: 61 TN----LAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSI 116
+ L + + D+G Y C VK E+ + V + G +D +++ +
Sbjct: 505 NSRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVEERK--AAGSRDVSLAKADA 562
Query: 117 IVFECSV 123
E +
Sbjct: 563 APDEKVL 569
Score = 41.1 bits (95), Expect = 0.002
Identities = 17/122 (13%), Positives = 29/122 (23%), Gaps = 24/122 (19%)
Query: 297 LFGPANQTLPLRSEARLRCQVRGEG-----SVQWWRG--------------EREVGSGPR 337
+FGP + + C W R R
Sbjct: 4 IFGPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGR 63
Query: 338 VNVTGDG-----SLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAP 392
N+T + + ++++DSG Y C + S+ SL
Sbjct: 64 ANLTNFPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGPGLLNDTKVYT 123
Query: 393 EP 394
Sbjct: 124 VD 125
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 135 bits (341), Expect = 2e-36
Identities = 39/205 (19%), Positives = 60/205 (29%), Gaps = 24/205 (11%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKK-NGHPIDFEN--------SKRLRLV 58
+V ++ L C G P + WK G
Sbjct: 4 VYTAQSDVQVPENESIKLTC-TYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTF 62
Query: 59 DGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAV-LRVLVKPYIIRGPKDTTVSASSII 117
+ + + D+G Y C+V G ++ L VLV P ++V+ +
Sbjct: 63 SSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRA 122
Query: 118 VFECSVG-GDAVLTVHWKRLGSAMPED------------RMSVLPSRSLQLSDVRLEDAG 164
V CS G W + G +M S L V D+G
Sbjct: 123 VLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSG 182
Query: 165 EYVCEAENAVGKISASATLTVQMAP 189
EY C+A+N G S +
Sbjct: 183 EYYCQAQNGYGTAMRSEAAHMDAVE 207
Score = 127 bits (320), Expect = 2e-33
Identities = 41/213 (19%), Positives = 67/213 (31%), Gaps = 24/213 (11%)
Query: 99 KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAM------------PEDRMS 146
K + D V + I C+ G + V WK + + P
Sbjct: 1 KGSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRV 60
Query: 147 VLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASAT--LTVQMAPIVRERPSDLRLEVGR 204
S + S V +D GEY C G+ + LTV + P + +G
Sbjct: 61 TFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGN 120
Query: 205 DAVFLCG-IEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNL----LKIQNVSR 259
AV C +GSPP W +G + D +S ++ L V+
Sbjct: 121 RAVLTCSEHDGSPPSEYSWFKDGIS--MLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTA 178
Query: 260 T-AAPLIILCLGVNAAGSDLARASLTVSGPDPN 291
+ C N G+ + + + + N
Sbjct: 179 FDSGEYY--CQAQNGYGTAMRSEAAHMDAVELN 209
Score = 106 bits (265), Expect = 4e-26
Identities = 37/216 (17%), Positives = 73/216 (33%), Gaps = 23/216 (10%)
Query: 189 PIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNR--SLIYPGDRVDNIQAEITS 246
V SD+++ C G P W +L+ ++ A+ +
Sbjct: 2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT 61
Query: 247 DGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLP 306
+ + +V+R C+ G + S+ ++ PP ++
Sbjct: 62 FSSSGITFSSVTRKDNG-EYTCMVSEEGGQNYGEVSIHLTV---LVPPSKPTISVPSSVT 117
Query: 307 LRSEARLRCQVRGEGS----VQWWRGEREVGSGPRVNVT-----------GDGSLVLTDV 351
+ + A L C +GS W++ + + G L+ V
Sbjct: 118 IGNRAVLTCSEH-DGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPV 176
Query: 352 TKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIG 387
T DSGEY C ++ +G+A S + ++ N+G
Sbjct: 177 TAFDSGEYYCQAQNGYGTAMRSEAAHMDAVE-LNVG 211
Score = 90.0 bits (223), Expect = 2e-20
Identities = 21/108 (19%), Positives = 34/108 (31%), Gaps = 10/108 (9%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN---- 62
V G+ A+L C G P W K+G + ++K+ R ++
Sbjct: 106 SKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTID 165
Query: 63 -----LAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRG 105
L D G Y C +N GT + + + G
Sbjct: 166 PKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRS-EAAHMDAVELNVGG 212
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3
PDB: 1wip_A 1wiq_A 3t0e_E
Length = 363
Score = 139 bits (351), Expect = 5e-36
Identities = 43/397 (10%), Positives = 99/397 (24%), Gaps = 80/397 (20%)
Query: 17 VAAGDTALLECGPPRGHPEPTLVWKKNGHPI------------------DFENSKRLRLV 58
GDT L C WK + ++ + L
Sbjct: 6 GKKGDTVELTCTAS-QKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQ 64
Query: 59 DGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIV 118
L I++ + D Y C V++ + V + DT + +
Sbjct: 65 GNFPLIIKNLKIEDSDTYICEVEDQKEEVQLL--VFGLTANS-------DTHLLQGQSLT 115
Query: 119 FECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKIS 178
+ +V + ++ ++L +S + L+D+G + C K+
Sbjct: 116 LTLESPPGSSPSVQCRS------PRGKNIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVE 169
Query: 179 ASATLTVQMAP-----IVRERPSDLRL---------EVGRDAVFLCGIEGSPPPSTFWML 224
+ V + ++ + ++ E + ++
Sbjct: 170 FKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITF 229
Query: 225 EGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPL-IILCLGVNAAGSDLARASL 283
+ + + + ++ L + A + G +L
Sbjct: 230 DLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNL 289
Query: 284 TVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRGEGS----VQWWRGEREVGSGPRVN 339
V L C+V G S + +E R
Sbjct: 290 VVMRATQLQ------------------KNLTCEVWGPTSPKLMLSLKLENKEAKVSKR-- 329
Query: 340 VTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASL 376
V ++G + C++ G +++
Sbjct: 330 ------EKAVWVLNPEAGMWQCLLSDS-GQVLLESNI 359
Score = 99.1 bits (246), Expect = 2e-22
Identities = 34/265 (12%), Positives = 63/265 (23%), Gaps = 52/265 (19%)
Query: 12 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKT 71
+ G + L P P++ + + G L++
Sbjct: 103 NSDTHLLQGQSLTLTLESP-PGSSPSVQCRSPRGKN---------IQGGKTLSVSQLELQ 152
Query: 72 DDGRYQCVVKNVAGTRESTDAVLRVLV---KPYIIRGPKDTTVSASSIIVFECSVGGDAV 128
D G + C V E + VL I+ + V S + F +
Sbjct: 153 DSGTWTCTVLQNQKKVEFK-IDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSG 211
Query: 129 LTVHWKRLGSAMPED--------------------RMSVLPSRSLQLS----DVRLEDAG 164
+ W+ ++ + ++ + L L+ + +G
Sbjct: 212 -ELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSG 270
Query: 165 EYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWML 224
E GK+ L V A C + G P L
Sbjct: 271 NLTLALEAKTGKLHQEVNLVVMRAT-------------QLQKNLTCEVWGPTSPKLMLSL 317
Query: 225 EGNRSLIYPGDRVDNIQAEITSDGM 249
+ R + GM
Sbjct: 318 KLENKEAKVSKREKAVWVLNPEAGM 342
Score = 76.8 bits (188), Expect = 5e-15
Identities = 39/261 (14%), Positives = 68/261 (26%), Gaps = 37/261 (14%)
Query: 201 EVGRDAVFLCGIEGSPPPSTFWM-------LEGNRSLIYPGDRVDNIQAEIT----SDGM 249
+ G C W L S + G N +A+ G
Sbjct: 7 KKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGN 66
Query: 250 NLLKIQNVSRT-AAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLR 308
L I+N+ + I C + L V G N +L G
Sbjct: 67 FPLIIKNLKIEDSDTYI--CEVEDQKEE----VQLLVFGLTANSDTHLLQG--------- 111
Query: 309 SEARLRCQVRG--EGSVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSP 366
L + SVQ + N+ G +L ++ + +DSG +TC V
Sbjct: 112 QSLTLTLESPPGSSPSVQCRSPRGK-------NIQGGKTLSVSQLELQDSGTWTCTVLQN 164
Query: 367 HGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGS 426
+ + + + E V + L W S
Sbjct: 165 QKKVEFKIDIVVLAFQKASS-IVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSS 223
Query: 427 SSLLGYQVEMYSRPLPSSSPS 447
S + + ++ + +
Sbjct: 224 KSWITFDLKNKEVSVKRVTQD 244
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 134 bits (338), Expect = 1e-35
Identities = 41/231 (17%), Positives = 72/231 (31%), Gaps = 32/231 (13%)
Query: 275 GSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRGE--GSVQWWRGEREV 332
+ A +S V P + GP ++ + C+V ++ W+R + +
Sbjct: 1 ATYAAASSALVPRGSHMYAPKLQ-GPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLL 59
Query: 333 GSGPRVNVT-----GDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIG 387
S N+ L +T ++ D G Y C + G S L
Sbjct: 60 PSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQADT------ 113
Query: 388 FFRAPEPSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPS 447
P P+ V ++ + + G +L Y+ E +
Sbjct: 114 ----------PSSPSIDQ-VEPYSSTAQVQFDEPEATGGVPILKYKAEWRA-------VG 155
Query: 448 GDTATATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSD 498
+ + W I+T+ L TY + ALN GL S S+
Sbjct: 156 EEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASE 206
Score = 91.8 bits (228), Expect = 4e-21
Identities = 33/191 (17%), Positives = 65/191 (34%), Gaps = 15/191 (7%)
Query: 12 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV---DGTNLAIQDS 68
P + G+ + C +P T+ W ++G + N +++ + L +
Sbjct: 25 PVAVYTWEGNQVNITC-EVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPD 83
Query: 69 RKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSV--GGD 126
+ D G Y C N G +L P + S+++ + F+ GG
Sbjct: 84 SENDFGNYNCTAVNRIGQESLE-FILVQADTPSSPSIDQVEPYSSTAQVQFDEPEATGGV 142
Query: 127 AVL--TVHWKRLGSAMPEDRMSVLPSRSLQLSDV--RLEDAGEY---VCEAENAVGKISA 179
+L W+ +G + + S++ L+ Y + A N G
Sbjct: 143 PILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLA-ALNGKGLGEI 201
Query: 180 SATLTVQMAPI 190
SA + P+
Sbjct: 202 SAASEFKTQPV 212
Score = 83.3 bits (206), Expect = 3e-18
Identities = 28/142 (19%), Positives = 46/142 (32%), Gaps = 17/142 (11%)
Query: 74 GRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHW 133
Y + + P ++GP + + C V T+ W
Sbjct: 1 ATYAAASSALVPRGS-------HMYAP-KLQGPVAVYTWEGNQVNITCEVFAYPSATISW 52
Query: 134 KRLGSAMPED-----RMSVLPSRS-LQLSDVRLEDAGEYVCEAENAVGKISASATLTVQM 187
R G +P ++ PS S L+++ D G Y C A N +G+ S L
Sbjct: 53 FRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQAD 112
Query: 188 APIVRERPSDLRLEVGRDAVFL 209
P PS ++E +
Sbjct: 113 TP---SSPSIDQVEPYSSTAQV 131
Score = 63.3 bits (154), Expect = 3e-11
Identities = 22/138 (15%), Positives = 42/138 (30%), Gaps = 25/138 (18%)
Query: 164 GEYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWM 223
Y + V + + AP ++ P + G C + P + W
Sbjct: 1 ATYAAASSALVPR------GSHMYAPKLQG-PVAVYTWEGNQVNITCEVFAYPSATISWF 53
Query: 224 LEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSR------TAAPLIILCLGVNAAGSD 277
+G L+ + NI+ + + L++ S C VN G +
Sbjct: 54 RDGQ--LLPSSNYS-NIKIY-NTPSASYLEVTPDSENDFGNYN-------CTAVNRIGQE 102
Query: 278 LARASLTVSGPDPNPPPV 295
L + P+ P +
Sbjct: 103 SLEFILVQADT-PSSPSI 119
Score = 44.0 bits (104), Expect = 8e-05
Identities = 16/95 (16%), Positives = 33/95 (34%), Gaps = 9/95 (9%)
Query: 640 EPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQI----IVGGGNNSALINMTVS 695
+ Q+ +++ +++ P T I Y+ + +S + +
Sbjct: 115 SSPSIDQVEP----YSSTAQVQFDEPEA-TGGVPILKYKAEWRAVGEEVWHSKWYDAKEA 169
Query: 696 ASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRP 730
+ + + L Y+V LAA N G G S
Sbjct: 170 SMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAA 204
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell
adhesion molecule, immunoglobuline superfamily,
alternative splicing, cell adhesion; 2.19A {Mus
musculus} PDB: 3mj7_B* 2npl_X
Length = 214
Score = 132 bits (334), Expect = 2e-35
Identities = 42/208 (20%), Positives = 69/208 (33%), Gaps = 32/208 (15%)
Query: 10 VQPKSQRVAAGDTALLEC---GPPRGHPEPTLVWKKNGHPIDF----------------- 49
+ A G+TA L C P + W +
Sbjct: 5 TPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNY 64
Query: 50 --ENSKRLRLVDG------TNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPY 101
+ R+ ++ + + + +D G YQC VK G +L VLVKP
Sbjct: 65 YPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKK-FLLTVLVKPS 123
Query: 102 IIRGPKDTTVSASSIIVFECSV-GGDAVLTVHWKRLGSA--MPEDRMSVLPSRSLQLSDV 158
R D + + +C G L W++L + MP ++ + S + + +
Sbjct: 124 GTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVISVKNA 183
Query: 159 RLEDAGEYVCEAENAVGKISASATLTVQ 186
E +G Y C +N VG L V
Sbjct: 184 SSEYSGTYSCTVQNRVGSDQCMLRLDVV 211
Score = 94.0 bits (233), Expect = 8e-22
Identities = 40/220 (18%), Positives = 66/220 (30%), Gaps = 42/220 (19%)
Query: 102 IIRGPKDTTVSASSIIVFECSVGGDAV----LTVHWKRLGSAMP---------------- 141
I + + C L + W S
Sbjct: 3 ITTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYD 62
Query: 142 ------EDRMSVLPSR------SLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAP 189
+ R+ + S+ +++++L D G Y C+ + A G + LTV + P
Sbjct: 63 NYYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKP 122
Query: 190 IVRERPSDLRLEVGRDAVFLCG-IEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDG 248
D E+G D C EGS P W + S P + + +
Sbjct: 123 SGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSD-SQTMPTPWLAEMTS------ 175
Query: 249 MNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGP 288
++ ++N S + C N GSD L V P
Sbjct: 176 -PVISVKNASSEYSGTYS-CTVQNRVGSDQCMLRLDVVPP 213
Score = 88.6 bits (219), Expect = 6e-20
Identities = 33/218 (15%), Positives = 72/218 (33%), Gaps = 32/218 (14%)
Query: 191 VRERPSDLRLEVGRDAVFLCGIEGSP----PPSTFWMLEGNRS-------LIYPGDRVDN 239
+ + G A C SP P W++ + + ++Y GD++ +
Sbjct: 3 ITTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYD 62
Query: 240 IQAEITSDGMNLLKIQNVSRTAAPLII-----------LCLGVNAAGSDLARASLTVSGP 288
++ +V A + + C A G + LTV
Sbjct: 63 NYYPDLKGRVHFTS-NDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVK 121
Query: 289 DPNPPPVILFGPANQTLPLRSEARLRCQVRG---EGSVQWWR-GEREVGSGPRVNVTGDG 344
P + + + ++ +L+C+ + +W + + + P +
Sbjct: 122 -----PSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSP 176
Query: 345 SLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPT 382
+ + + + E SG Y+C V++ GS L P+
Sbjct: 177 VISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVVPPS 214
Score = 70.9 bits (173), Expect = 8e-14
Identities = 17/93 (18%), Positives = 32/93 (34%), Gaps = 4/93 (4%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQD 67
G+ L+C P G W+K + +++++
Sbjct: 124 GTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPV-ISVKN 182
Query: 68 SRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKP 100
+ G Y C V+N G+ + +LR+ V P
Sbjct: 183 ASSEYSGTYSCTVQNRVGSDQ---CMLRLDVVP 212
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 131 bits (330), Expect = 9e-35
Identities = 32/198 (16%), Positives = 63/198 (31%), Gaps = 30/198 (15%)
Query: 17 VAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV---DGTNLAIQDSRKTDD 73
+ + L + + W NG I S R++ + L I + D
Sbjct: 14 QSTAEGIQLYSFVTYYVEDLKVNWSHNGSAI--RYSDRVKTGVTGEQIWLQINEPTPNDK 71
Query: 74 GRYQCVVKNVAGTREST--------------------DAVLRVLVKPYIIRGPKDTTVSA 113
G+Y + + + T A+ + P T+
Sbjct: 72 GKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQE 131
Query: 114 SSIIVFECSVGGDAVLTVHWKRLGSAMPE-DRMSVLPSR----SLQLSDVRLEDAGEYVC 168
+ C+V GD V W + A+ + D ++ ++ V D+G+Y
Sbjct: 132 GKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGL 191
Query: 169 EAENAVGKISASATLTVQ 186
+N G ++ T++V
Sbjct: 192 VVKNKYGSETSDFTVSVF 209
Score = 106 bits (265), Expect = 5e-26
Identities = 38/220 (17%), Positives = 69/220 (31%), Gaps = 44/220 (20%)
Query: 102 IIRGPKDTTVSASSIIVFECSV-GGDAVLTVHWKRLGSAM-PEDRMSVLPS---RSLQLS 156
+ S + I V L V+W GSA+ DR+ + LQ++
Sbjct: 5 ALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQIN 64
Query: 157 DVRLEDAGEYVCEAENAVGKISASATLTVQ---------------------MAPIVRERP 195
+ D G+YV E + + L+ Q A ++ P
Sbjct: 65 EPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLP 124
Query: 196 SDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQ 255
+ ++ G+ C + G PPP W+ + D + + I
Sbjct: 125 DVVTIQEGKALNLTCNVWGDPPPEVSWLKNE--KALAQTDH---CNLKFEAGRTAYFTIN 179
Query: 256 NVSR------TAAPLIILCLGVNAAGSDLARASLTVSGPD 289
VS + N GS+ + +++V P+
Sbjct: 180 GVSTADSGKYG-------LVVKNKYGSETSDFTVSVFIPE 212
Score = 104 bits (261), Expect = 2e-25
Identities = 36/214 (16%), Positives = 61/214 (28%), Gaps = 45/214 (21%)
Query: 195 PSDLRLE-VGRDAVFLCGIE-GSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDG-MNL 251
+DL+++ + W G S I DRV + G
Sbjct: 8 ATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNG--SAIRYSDRV-----KTGVTGEQIW 60
Query: 252 LKIQNVSR------TAAPLIILCLGVNAAGSDLARASLTVSGPD---------------- 289
L+I + + L+ D
Sbjct: 61 LQINEPTPNDKGKYV-------MELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAE 113
Query: 290 PNPPPVILFGPANQTLPLRSEARLRCQVRGEG--SVQWWRGEREVGSGPRVNVT----GD 343
N V+ P T+ L C V G+ V W + E+ + N+
Sbjct: 114 KNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRT 173
Query: 344 GSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLR 377
+ V+ DSG+Y VVK+ +GS + ++
Sbjct: 174 AYFTINGVSTADSGKYGLVVKNKYGSETSDFTVS 207
Score = 80.7 bits (199), Expect = 2e-17
Identities = 24/94 (25%), Positives = 35/94 (37%), Gaps = 4/94 (4%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN--LAI 65
P + G L C G P P + W KN + + L+ G I
Sbjct: 120 LGGLPDVVTIQEGKALNLTC-NVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTI 178
Query: 66 QDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVK 99
D G+Y VVKN G+ E++D + V +
Sbjct: 179 NGVSTADSGKYGLVVKNKYGS-ETSDFTVSVFIP 211
Score = 67.2 bits (164), Expect = 1e-12
Identities = 15/97 (15%), Positives = 26/97 (26%), Gaps = 6/97 (6%)
Query: 311 ARLRCQVRGEG---SVQWWRGEREVGSGPRVNVTGDG---SLVLTDVTKEDSGEYTCVVK 364
+L V V W + RV G L + + T D G+Y +
Sbjct: 20 IQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELF 79
Query: 365 SPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPP 401
+ L ++ F R + +
Sbjct: 80 DGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNR 116
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 133 bits (336), Expect = 1e-34
Identities = 43/295 (14%), Positives = 81/295 (27%), Gaps = 33/295 (11%)
Query: 97 LVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLS 156
P I + V A + C V W + M
Sbjct: 10 PSPPSIHPAQSELIVEAGDTLSLTCIDPD----FVRWTFKTY---FNEMVENKKNEWIQE 62
Query: 157 DVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSP 216
G Y C N + +S + V+ + L + DA+ C +
Sbjct: 63 KAEATRTGTYTCSNSNGLT---SSIYVFVRDPAKLFLVGLPLFGKEDSDALVRCPLTDPQ 119
Query: 217 PPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGS 276
+ +SL + + I+NV R L + C
Sbjct: 120 VSQYSLIECDGKSL--------PTDLTFVPNPKAGITIKNVKRAYHRLCVRCAAQRDGTW 171
Query: 277 DL-ARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRGE---GSVQWWRGEREV 332
+ +L V PV+ + L + C ++ + W + +
Sbjct: 172 LHSDKFTLKVR-EAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQP 230
Query: 333 GSGPRVNVTGD----------GSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLR 377
+V +L ++ +DSG + C + GSA+ + +L+
Sbjct: 231 QHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLK 285
Score = 122 bits (308), Expect = 5e-31
Identities = 46/288 (15%), Positives = 80/288 (27%), Gaps = 26/288 (9%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQD 67
V AGDT L C + W + + +K +
Sbjct: 15 IHPAQSELIVEAGDTLSLTC-----IDPDFVRWTFKTYFNEMVENK------KNEWIQEK 63
Query: 68 SRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDA 127
+ T G Y C N + + V + S + C +
Sbjct: 64 AEATRTGTYTCSNSNGLTSSIY----VFVRDPAKLFLVGLPLFGKEDSDALVRCPLTDPQ 119
Query: 128 VLTVHWKRL-GSAMPED-RMSVLPSRSLQLSDV-RLEDAGEYVCEAENAVG-KISASATL 183
V G ++P D P + + +V R C A+ S TL
Sbjct: 120 VSQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTL 179
Query: 184 TVQMA----PIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTF-WMLEGNRSLIYPGDRVD 238
V+ A P+V + L+ G +C I+ W+ + + +
Sbjct: 180 KVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHN 239
Query: 239 NIQAEITSDGMN-LLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTV 285
+ + L I + + + + C N GS +L V
Sbjct: 240 SWHRGDFNYERQETLTISSARVDDSGVFM-CYANNTFGSANVTTTLKV 286
Score = 107 bits (269), Expect = 7e-26
Identities = 25/198 (12%), Positives = 53/198 (26%), Gaps = 19/198 (9%)
Query: 6 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKK-NGHPIDFENSKRLRLVDGTNLA 64
+ + AL+ C P + +G + + +
Sbjct: 92 AKLFLVGLPLFGKEDSDALVRC-PLTDPQVSQYSLIECDGKSLP-TDLTFVPNPKAGITI 149
Query: 65 IQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVK----PYIIRGPKDTTVSASSIIVFE 120
R +C + S L+V P + +
Sbjct: 150 KNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVV 209
Query: 121 CSV-GGDAVLTVHWKRLGSAMP-----------EDRMSVLPSRSLQLSDVRLEDAGEYVC 168
C++ + W ++ + +L +S R++D+G ++C
Sbjct: 210 CTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMC 269
Query: 169 EAENAVGKISASATLTVQ 186
A N G + + TL V
Sbjct: 270 YANNTFGSANVTTTLKVV 287
Score = 59.0 bits (142), Expect = 2e-09
Identities = 16/103 (15%), Positives = 27/103 (26%), Gaps = 10/103 (9%)
Query: 284 TVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRGEGSVQWWRGEREVGSGPRVNVTGD 343
+ S +P PP I + + L C V+W +
Sbjct: 4 SASPGEP-SPPSIHPAQSELIVEAGDTLSLTC--IDPDFVRWTFK----TYFNEMVENKK 56
Query: 344 GSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNI 386
+ +G YTC + S S + P +
Sbjct: 57 NEWIQEKAEATRTGTYTCSNSNGLTS---SIYVFVRDPAKLFL 96
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A
{Homo sapiens}
Length = 207
Score = 130 bits (327), Expect = 2e-34
Identities = 25/202 (12%), Positives = 60/202 (29%), Gaps = 23/202 (11%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN---LA 64
F + + + + + N I ++ + T +
Sbjct: 5 FTKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMF 64
Query: 65 IQDSRKTDDGRYQCVVKNVAGTREST-----DAVLRVLVKPYIIRG------------PK 107
++ + D+G Y +++ T ST D ++ + R
Sbjct: 65 MEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYL 124
Query: 108 DTTVSASSIIVFECSV-GGDAVLTVHWKRLGSAMPEDRMSVLPS--RSLQLSDVRLEDAG 164
V+ ++ +C V + W + + D +L +++ +DAG
Sbjct: 125 SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAG 184
Query: 165 EYVCEAENAVGKISASATLTVQ 186
Y ++ GK + L +
Sbjct: 185 IYEVILKDDRGKDKSRLKLVDE 206
Score = 97.7 bits (243), Expect = 3e-23
Identities = 27/206 (13%), Positives = 64/206 (31%), Gaps = 31/206 (15%)
Query: 193 ERPSDLRLEVGRDAVFLCGIE-GSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSD---G 248
+ + + F E S ++ I+ G + ++ D G
Sbjct: 7 KSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKE--IFEGPKY-----KMHIDRNTG 59
Query: 249 MNLLKIQNVSRTAAPLIILCLGVNAAGSD--------------LARASLTVSGPDPNPPP 294
+ + ++ + + ++ A P
Sbjct: 60 IIEMFMEKLQDEDEG-TYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGP 118
Query: 295 VILFGPANQTLPLRSEARLRCQVRG---EGSVQWWRGEREVGSGPRVNV-TGDGSLVLTD 350
+ + + L+C+V E + W++ ERE+ + + G +L++T+
Sbjct: 119 HFVE-YLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITE 177
Query: 351 VTKEDSGEYTCVVKSPHGSASWSASL 376
+K+D+G Y ++K G L
Sbjct: 178 FSKKDAGIYEVILKDDRGKDKSRLKL 203
Score = 85.4 bits (211), Expect = 7e-19
Identities = 24/217 (11%), Positives = 59/217 (27%), Gaps = 47/217 (21%)
Query: 103 IRGPKDTTVSASSIIVFE-CSVGGDAVLTVHWKRLGSAMPED---RMSVLPSR---SLQL 155
+ + + F + V++ + E +M + + + +
Sbjct: 6 TKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFM 65
Query: 156 SDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEV------------- 202
++ ED G Y + ++ ++ L + +++ R E
Sbjct: 66 EKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLS 125
Query: 203 -----GRDAVFLCGIEGSPPPSTF-WMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQN 256
+ + C + + W + I ++ D DG+ L I
Sbjct: 126 WEVTGECNVLLKCKVANIKKETHIVWYKDER--EISVDEKHDF------KDGICTLLITE 177
Query: 257 VSR------TAAPLIILCLGVNAAGSDLARASLTVSG 287
S+ + + G D +R L
Sbjct: 178 FSKKDAGIYE-------VILKDDRGKDKSRLKLVDEA 207
Score = 61.9 bits (150), Expect = 7e-11
Identities = 15/93 (16%), Positives = 31/93 (33%), Gaps = 8/93 (8%)
Query: 300 PANQTLPLRSEARLRCQV---RGEGSVQWWRGEREVGSGPRVNVTGDG-----SLVLTDV 351
+ + + R Q G V + E+E+ GP+ + D + + +
Sbjct: 9 ELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKL 68
Query: 352 TKEDSGEYTCVVKSPHGSASWSASLRFESPTNP 384
ED G YT ++ + + L +
Sbjct: 69 QDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKL 101
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system;
HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 131 bits (331), Expect = 2e-34
Identities = 46/287 (16%), Positives = 79/287 (27%), Gaps = 35/287 (12%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQD 67
+QP V +T L C + W NG + I
Sbjct: 4 ITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTSTP---------SYRITS 54
Query: 68 SRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSV-GGD 126
+ D G Y+C + S L + +++ + + C
Sbjct: 55 ASVNDSGEYRCQRGL---SGRSDPIQLEIHRGWLLLQ-VSSRVFTEGEPLALRCHAWKDK 110
Query: 127 AVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQ 186
V V + R G A + +L + + G Y C SA ++TV+
Sbjct: 111 LVYNVLYYRNGKAFKFFH----WNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVK 166
Query: 187 ---MAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAE 243
AP++ + L G C + +Y + +
Sbjct: 167 ELFPAPVLNASVTS-PLLEGNLVTLSCETKLLLQRPGLQ--------LYFSFYMGSKTLR 217
Query: 244 ITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLAR---ASLTVSG 287
+ + +I R + L C G+ L R L V G
Sbjct: 218 GRNTS-SEYQILTARREDSGLYW-CEAATEDGNVLKRSPELELQVLG 262
Score = 126 bits (319), Expect = 1e-32
Identities = 45/283 (15%), Positives = 79/283 (27%), Gaps = 30/283 (10%)
Query: 99 KPYIIRGPKDTTVSASSIIVFECSVGGD-AVLTVHWKRLGSAMPEDRMSVLPSRSLQLSD 157
K I P +V + C V + W G+A + S +++
Sbjct: 1 KAVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTS------TPSYRITS 54
Query: 158 VRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPP 217
+ D+GEY C+ S L + ++ + S + E G C
Sbjct: 55 ASVNDSGEYRCQRGL--SGRSDPIQLEIHRGWLLLQVSSRVFTE-GEPLALRCHAWKDKL 111
Query: 218 PSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSD 277
++ + + L I + + C G+
Sbjct: 112 VYNVLYYRNGKAFKFFHWN-------------SNLTILKTNISHNGTYH-CSGMGKHRYT 157
Query: 278 LARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG--EGSVQWWRGEREVGSG 335
A S+TV P +L L + L C+ + + +GS
Sbjct: 158 SAGISVTVKEL---FPAPVLNASVTSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSK 214
Query: 336 PRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSA-SWSASLR 377
+ +EDSG Y C + G+ S L
Sbjct: 215 TLRGRNTSSEYQILTARREDSGLYWCEAATEDGNVLKRSPELE 257
Score = 121 bits (305), Expect = 8e-31
Identities = 33/195 (16%), Positives = 64/195 (32%), Gaps = 20/195 (10%)
Query: 1 ISLLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG 60
+ + R +Q S+ G+ L C + +++ +NG F +
Sbjct: 78 LEIHRGWLLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFFHW-------N 130
Query: 61 TNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAV-LRVLVKPYIIRGPKDTTVSASSIIVF 119
+NL I + + +G Y C + +V ++ L ++ + + +++
Sbjct: 131 SNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAPVLNASVTSPLLEGNLVTL 190
Query: 120 ECSVGG-----DAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAV 174
C L + + S Q+ R ED+G Y CEA
Sbjct: 191 SCETKLLLQRPGLQLYFSFYMGSKTLRGRN----TSSEYQILTARREDSGLYWCEAATED 246
Query: 175 GKI---SASATLTVQ 186
G + S L V
Sbjct: 247 GNVLKRSPELELQVL 261
Score = 67.6 bits (165), Expect = 2e-12
Identities = 34/227 (14%), Positives = 62/227 (27%), Gaps = 44/227 (19%)
Query: 189 PIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTF-WMLEGNRSLIYPGDRVDNIQAEITSD 247
++ +P + + C + P S+ W L G Q S
Sbjct: 2 AVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTA-----------TQTSTPS- 49
Query: 248 GMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPL 307
+I + S + C + SD L + ++L ++
Sbjct: 50 ----YRITSASVNDSGEYR-CQRGLSGRSD--PIQLEIH-----RGWLLLQVS-SRVFTE 96
Query: 308 RSEARLRCQVRGEG---SVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVK 364
LRC + +V ++R + + +L + +G Y C
Sbjct: 97 GEPLALRCHAWKDKLVYNVLYYRNGKAFKFF-----HWNSNLTILKTNISHNGTYHCSGM 151
Query: 365 SPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTA 411
H S S+ + F AP + T P L
Sbjct: 152 GKHRYTSAGISVTVKEL-------FPAPVLNA---SVTSPLLEGNLV 188
>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane,
disulfide bond, glycoprotein, immunoglobulin domain,
membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A
{Homo sapiens}
Length = 589
Score = 137 bits (347), Expect = 5e-34
Identities = 105/672 (15%), Positives = 186/672 (27%), Gaps = 129/672 (19%)
Query: 97 LVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLT-------VHWKRLGSAMPEDRMSVLP 149
L+ P P+ V S C + + + WK +P+++ +++
Sbjct: 1 LLDPCGYISPESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIIN 60
Query: 150 SRSLQLSDVRL-EDAGEYVC--EAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDA 206
+ ++ + + C + + T+ + P E+P +L V
Sbjct: 61 RTASSVTFTDIASLNIQLTCNILTFGQLEQNVYGITIISGLPP---EKPKNLSCIVNEGK 117
Query: 207 VFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLII 266
C E T LE N +L + D + + + +
Sbjct: 118 KMRC--EWDGGRET--HLETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEV 173
Query: 267 LCLGVNAAG---SDLARASLTVSGPDPNPPPVILFGPANQTL----------PLRSEARL 313
NA G SD PNPP + + + ++S L
Sbjct: 174 WVEAENALGKVTSDHINFDPVYKVK-PNPPHNLSVINSEELSSILKLTWTNPSIKSVIIL 232
Query: 314 RCQV--RGEGSVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYT----CVVKSPH 367
+ + R + + W + E + R + T + D+ EY C+ +
Sbjct: 233 KYNIQYRTKDASTWSQIPPEDTASTRSSFT------VQDLKP--FTEYVFRIRCMKEDGK 284
Query: 368 GSAS-WSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGLTLAW---SRNNQ 423
G S WS + + P Q + L W
Sbjct: 285 GYWSDWSEEASGITYED-------RPS-KAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEA 336
Query: 424 IGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVGLT---YTF 480
G +L Y+V T R +++ + + T LTV LT Y
Sbjct: 337 NGK--ILDYEV-------------------TLTRWKSHLQNYTVNATKLTVNLTNDRYLA 375
Query: 481 LVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQ 540
+ N G S + L+ I + +F L
Sbjct: 376 TLTVRNLVGKSDAAVLT--------------------IPACDFQATHPVMDL-------- 407
Query: 541 EGGGSLIELTEVKPMTSTSVKLTWEILNTD---YIEGVYIYSRGLDPPASVAMLTVLHAG 597
+ + W YI + S
Sbjct: 408 -----------KAFPKDNMLWVEWTTPRESVKKYILEWCVLSDKAPCITDW---QQEDGT 453
Query: 598 EASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVRTLECEPSGVPQLTDPVLLNATS 657
+L LA Y + P + G P +++ + PS P + +
Sbjct: 454 VHRTYLRGNLAESKCYLITVTPVYADGPGSPESIK-AYLKQAPPSKGPTVRTKKV-GKNE 511
Query: 658 VLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRYSVSLA 717
+L+W PV NG IR Y I + V +S L++L++ Y V +A
Sbjct: 512 AVLEWDQLPVDVQNGFIRNYTIFY-RTIIGNETAVNVDSSHTEYTLSSLTSDTLYMVRMA 570
Query: 718 ATNRAGTGPYSR 729
A G
Sbjct: 571 AYTDEGGKDGPE 582
Score = 106 bits (266), Expect = 6e-24
Identities = 71/476 (14%), Positives = 131/476 (27%), Gaps = 87/476 (18%)
Query: 291 NPPPVILFGPANQTLPLRSEARLRCQVRGEGS---------VQWWRGEREVGSGPRVNVT 341
+P I P + + L S C ++ + + W + +
Sbjct: 3 DPCGYIS--PESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIIN 60
Query: 342 GDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPP 401
S V + + TC + + + + P P P
Sbjct: 61 RTASSVTFTDIASLNIQLTCNILTFGQLEQNVYGITI-----------ISGLP---PEKP 106
Query: 402 TKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATN 461
+ + + W + + + ++ T + +
Sbjct: 107 KNLSCIVNEGKKMRCEWDGGRETHLET--NFTLKS----------EWATHKFADCKAKRD 154
Query: 462 VPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSE 521
P+ + + V A N+ G ++ + V +
Sbjct: 155 TPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVK---------------- 198
Query: 522 NFPDEGRGESLRRARQHLQEGGGSLIELTEVKPMTSTSVKLTWE--ILNTDYIEGVYIYS 579
P+ S+ S+ +KLTW + + I I
Sbjct: 199 --PNPPHNLSV------------------INSEELSSILKLTWTNPSIKSVIILKYNIQY 238
Query: 580 RGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFL--VPFFG-SVDGKPSNLRAVRT 636
R D + A S F V L ++ Y F + + G S + T
Sbjct: 239 RTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGIT 298
Query: 637 LECEPSG----VPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINM 692
E PS ++ +V L WK P NG I Y++ + S L N
Sbjct: 299 YEDRPSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTRW-KSHLQNY 357
Query: 693 TVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGPEPRLEDWAS 748
TV+A+ T+ LTN RY +L N G + + + + D +
Sbjct: 358 TVNATKLTVNLTN----DRYLATLTVRNLVGKSDAAVLTIPACDFQATHPVMDLKA 409
Score = 90.8 bits (225), Expect = 6e-19
Identities = 90/659 (13%), Positives = 173/659 (26%), Gaps = 138/659 (20%)
Query: 3 LLREEFRVQPKSQRVAAGDTALLEC------GPPRGHPEPTLVWKKNGHPIDFENSKRLR 56
LL + P+S V C +VWK N I E +
Sbjct: 1 LLDPCGYISPESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIIN 60
Query: 57 LVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTD-AVLRVLVKPYIIRGPKDTTVSASS 115
+++ D + + C + ++ + + P PK+ + +
Sbjct: 61 R-TASSVTFTDIAS-LNIQLTCNILTFGQLEQNVYGITIISGLPP---EKPKNLSCIVNE 115
Query: 116 IIVFECS--VGGDAVL----TVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYV-- 167
C G + L T+ + + + S + D
Sbjct: 116 GKKMRCEWDGGRETHLETNFTLKSEWATHKFADCKAKRDTPTSCTV-DYSTVYFVNIEVW 174
Query: 168 CEAENAVGKISASATLTVQMAPIVR-ERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEG 226
EAENA+GK++ S + V+ P +L + + + + + P ++
Sbjct: 175 VEAENALGKVT-SDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVII-- 231
Query: 227 NRSLIYPGDRVDNIQAEITSDGM-NLLKIQNVSRTAAPLIILCLG-----------VNAA 274
L Y NIQ + + ++ + T + + L +
Sbjct: 232 ---LKY------NIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKED 282
Query: 275 G-------SDLARASLTVSGPDPNPPPVILFGPA----NQTLPLRSEARLRCQVRGEG-- 321
G S+ A P P P+ +T+ L + + G+
Sbjct: 283 GKGYWSDWSEEASGITYEDRPSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILD 342
Query: 322 -SVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFES 380
V R + + + VN T LT D T V++ G + +
Sbjct: 343 YEVTLTRWKSHLQNYT-VNAT-----KLTVNLTNDRYLATLTVRNLVGKSDAA------- 389
Query: 381 PTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRP 440
+ P N L + W+ + +L + V P
Sbjct: 390 ----VLTIPACDFQ---ATHPVMDLKAFPKDNMLWVEWTTPRESVKKYILEWCVLSDKAP 442
Query: 441 LPSSSPSGDTATATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEI 500
T + NL Y V + + G +P +
Sbjct: 443 -----------CITDWQQEDGTVHRTYLRGNLAESKCYLITVTPVYADGPGSPESIK--- 488
Query: 501 VLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPMTSTSV 560
+ P +G ++R K +
Sbjct: 489 ----------------AYLKQAPP--SKGPTVR------------------TKKVGKNEA 512
Query: 561 KLTWEILNTDY----IEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEF 615
L W+ L D I I+ R + + V + + ++ L + Y
Sbjct: 513 VLEWDQLPVDVQNGFIRNYTIFYRTIIGNET----AVNVDSSHTEYTLSSLTSDTLYMV 567
Score = 47.7 bits (113), Expect = 2e-05
Identities = 13/101 (12%), Positives = 24/101 (23%), Gaps = 13/101 (12%)
Query: 398 PGPPTKPTLVNQTANGLTLAWSRN-NQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWV 456
P N L W + + + + Y + T
Sbjct: 496 PSKGPTVRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTIFYR------------TIIGNET 543
Query: 457 RVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLS 497
V + T+++LT Y + A G +
Sbjct: 544 AVNVDSSHTEYTLSSLTSDTLYMVRMAAYTDEGGKDGPEFT 584
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 132 bits (333), Expect = 7e-34
Identities = 47/322 (14%), Positives = 86/322 (26%), Gaps = 53/322 (16%)
Query: 11 QPKSQRVAAGDTALLEC---GPPRGHPEPTLVWKKN---------------GHPIDFENS 52
S G +L C P + W+K+ G +
Sbjct: 20 VNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYR 79
Query: 53 KRLRLVDGT----NLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKD 108
+R+ + + + + D+G Y C + L V+ KP
Sbjct: 80 ERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQ 139
Query: 109 TTVSA-----SSIIVFECSV-GGDAVLTVHWKRLGSAMPE------DRMSVLPSRSLQLS 156
+ A ++V C+ G V W+ E +V +L
Sbjct: 140 AVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLV 199
Query: 157 DVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVR-ERPSDLRLEVGRDAVFLCGIEGS 215
R C + + S TL VQ P V E D C + +
Sbjct: 200 PSREAHQQSLACIVNYHMDRFKESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLTCKADAN 259
Query: 216 PPPSTF-WMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAA 274
PP + + W ++ + + L ++ + A I C N
Sbjct: 260 PPATEYHWTTLN-----------GSLPKGVEAQNRTLFFKGPINYSLAGTYI-CEATNPI 307
Query: 275 GSDLARASLTVSGPDPNPPPVI 296
G+ + + + +
Sbjct: 308 GTRSGQVEVNI-----TEAAAL 324
Score = 130 bits (328), Expect = 3e-33
Identities = 50/313 (15%), Positives = 86/313 (27%), Gaps = 47/313 (15%)
Query: 100 PYIIRGPKDTTVSASSIIVFECSV----GGDAVLTVHWKRLGSAMPE------------- 142
+++ + +V CS + V W++ + +
Sbjct: 15 SQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSV 74
Query: 143 -----DRMSVLPSR----SLQLSDVRLEDAGEYVCEAEN-AVGKISASATLTVQMAPIVR 192
+R+ L +++LS + LED G Y+CE G + LTV P
Sbjct: 75 LAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNW 134
Query: 193 ERPSDLRLEV-----GRDAVFLCGI-EGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITS 246
+ L + V C G PP W Y R N + S
Sbjct: 135 IEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVIS 194
Query: 247 DGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLP 306
++ + C+ +L V P V + G
Sbjct: 195 ----RYRLVPSREAHQ-QSLACIVNYHMDRFKESLTLNVQYE----PEVTIEGFDGNWYL 245
Query: 307 LRSEARLRCQVRGE---GSVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVV 363
R + +L C+ W + G V + +G Y C
Sbjct: 246 QRMDVKLTCKADANPPATEYHWTTLNGSLPKG--VEAQNRTLFFKGPINYSLAGTYICEA 303
Query: 364 KSPHGSASWSASL 376
+P G+ S +
Sbjct: 304 TNPIGTRSGQVEV 316
Score = 125 bits (315), Expect = 1e-31
Identities = 28/193 (14%), Positives = 57/193 (29%), Gaps = 7/193 (3%)
Query: 10 VQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFEN---SKRLRLVDGTNLAIQ 66
++++ + C G P + W+ + + + +
Sbjct: 140 AVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLV 199
Query: 67 DSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYI-IRGPKDTTVSASSIIVFECSVGG 125
SR+ C+V + + L V +P + I G + C
Sbjct: 200 PSREAHQQSLACIVNYHMDRFKES-LTLNVQYEPEVTIEGFDGNWYLQRMDVKLTCKADA 258
Query: 126 D-AVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLT 184
+ HW L ++P+ + + AG Y+CEA N +G S +
Sbjct: 259 NPPATEYHWTTLNGSLPK-GVEAQNRTLFFKGPINYSLAGTYICEATNPIGTRSGQVEVN 317
Query: 185 VQMAPIVRERPSD 197
+ A +
Sbjct: 318 ITEAAALEHHHHH 330
Score = 55.5 bits (133), Expect = 3e-08
Identities = 27/174 (15%), Positives = 49/174 (28%), Gaps = 31/174 (17%)
Query: 281 ASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG------EGSVQWWRGEREVGS 334
AS+T P ++ + + ++ L C V W +
Sbjct: 2 ASMTGGQQMGRDPSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQ 61
Query: 335 -----------------GPRVNVTG----DGSLVLTDVTKEDSGEYTCVVKS-PHGSASW 372
RV DG++ L+ + ED G Y C + P G+
Sbjct: 62 NVAIYNPSMGVSVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRES 121
Query: 373 SASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANG---LTLAWSRNNQ 423
+L + I +A + +ANG ++W +
Sbjct: 122 QLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLK 175
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 131 bits (330), Expect = 2e-33
Identities = 37/194 (19%), Positives = 52/194 (26%), Gaps = 17/194 (8%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQ 66
+VQ + V GD LL C G W K L
Sbjct: 160 TLKVQVPNASVDVGDDVLLRC-QVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLAN 218
Query: 67 DSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGD 126
+ + C +N G E + V V + T SV G
Sbjct: 219 VTSDLNRKNVTCWAENDVGRAEVS-----VQVNVSFPASVQLHTAVEMHHWCIPFSVDGQ 273
Query: 127 AVLTVHWKRLGSAMPED-----------RMSVLPSRSLQLSDVRLEDAGEYVCEAENAVG 175
++ W GS + E + L+L+ + G Y A N G
Sbjct: 274 PAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFG 333
Query: 176 KISASATLTVQMAP 189
+ SAS P
Sbjct: 334 QASASIMAAFMDNP 347
Score = 94.4 bits (234), Expect = 6e-21
Identities = 36/205 (17%), Positives = 61/205 (29%), Gaps = 29/205 (14%)
Query: 189 PIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDG 248
P ++ + + ++VG D + C +EG W+L +++
Sbjct: 159 PTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQ------SATVMKSGGLPSL 212
Query: 249 MNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLR 308
L + NV+ + C N G + VS P T
Sbjct: 213 G--LTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNVSFPASVQ---------LHTAVEM 261
Query: 309 SEARLRCQVRG--EGSVQWWRGEREVGSGPRVN----------VTGDGSLVLTDVTKEDS 356
+ V G S++W + + G L L T ++
Sbjct: 262 HHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNN 321
Query: 357 GEYTCVVKSPHGSASWSASLRFESP 381
G YT + +P G AS S F
Sbjct: 322 GNYTLLAANPFGQASASIMAAFMDN 346
Score = 92.5 bits (229), Expect = 3e-20
Identities = 33/193 (17%), Positives = 58/193 (30%), Gaps = 9/193 (4%)
Query: 100 PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKR--LGSAMPEDRMSVLPSRSLQLSD 157
P + + +V ++ C V G + W L + + LPS L L++
Sbjct: 159 PTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLAN 218
Query: 158 V-RLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSP 216
V + C AEN VG+ S + V V+ ++G P
Sbjct: 219 VTSDLNRKNVTCWAENDVGRAEVSVQVNVSFPASVQ----LHTAVEMHHWCIPFSVDGQP 274
Query: 217 PPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMN-LLKIQNVSRTAAPLIILCLGVNAAG 275
PS W+ G+ + ++ + L++ + L N G
Sbjct: 275 APSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYT-LLAANPFG 333
Query: 276 SDLARASLTVSGP 288
A
Sbjct: 334 QASASIMAAFMDN 346
Score = 62.1 bits (150), Expect = 3e-10
Identities = 28/155 (18%), Positives = 45/155 (29%), Gaps = 17/155 (10%)
Query: 292 PPPVILFGPANQTLPLRSEARLRCQVRGEG--SVQWWRGEREV-GSGPRVNVTGDGSLVL 348
P + N ++ + + LRCQV G G W E E + + L L
Sbjct: 157 GVPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTL 216
Query: 349 TDVTKE-DSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRA-------------PEP 394
+VT + + TC ++ G A S + P + + P P
Sbjct: 217 ANVTSDLNRKNVTCWAENDVGRAEVSVQVNVSFPASVQLHTAVEMHHWCIPFSVDGQPAP 276
Query: 395 STYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSL 429
S L + N + L
Sbjct: 277 SLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCL 311
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system;
1.85A {Branchiostoma floridae}
Length = 250
Score = 119 bits (299), Expect = 2e-30
Identities = 42/242 (17%), Positives = 62/242 (25%), Gaps = 65/242 (26%)
Query: 9 RVQPKSQRVAAGDTALLEC--GPPRGHPEPTLVWKKNGHPI------------------- 47
R V AG T L C P + W K P
Sbjct: 6 RTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGF 65
Query: 48 -----------DFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRE----STDA 92
DF + + L + D GRY C V + E +
Sbjct: 66 VESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSV 125
Query: 93 VLRVLV----KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPE------ 142
VL+V + + V + I C A V W +
Sbjct: 126 VLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTY 185
Query: 143 -------------------DRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATL 183
R S +R+L + ++ DAG CE G++ A +
Sbjct: 186 QPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSS 245
Query: 184 TV 185
T+
Sbjct: 246 TI 247
Score = 90.7 bits (224), Expect = 2e-20
Identities = 35/242 (14%), Positives = 64/242 (26%), Gaps = 57/242 (23%)
Query: 191 VRERPSDLRLEVGRDAVFLCGI---EGSPPPSTFWM-----------LEGNRSLIYPGDR 236
VR +++ + G C + PP W+ +GN + G
Sbjct: 5 VRTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLG 64
Query: 237 VDNIQAEITSDGMNLLKIQNVSRTAAPLIILCL----------------GVNAAGSDLAR 280
+ S G L + + A L + + G D
Sbjct: 65 FVESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKS 124
Query: 281 ASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG--EGSVQWWRGEREVGSGP-- 336
L V+G P V + + ++ + C +V W+ G +
Sbjct: 125 VVLKVTGHTP-SNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETG 183
Query: 337 ----------------------RVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSA 374
R + +G +LV+ D+G C + + G
Sbjct: 184 TYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADR 243
Query: 375 SL 376
S
Sbjct: 244 SS 245
Score = 80.0 bits (196), Expect = 9e-17
Identities = 34/240 (14%), Positives = 59/240 (24%), Gaps = 61/240 (25%)
Query: 106 PKDTTVSASSIIVFECSV---GGDAVLTVHWKRLGSAMPED------------------- 143
+ V A + CS + W + S
Sbjct: 9 HTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVES 68
Query: 144 --------------RMSVLPSRSLQLSDVRLEDAGEYVCEAEN-----AVGKISASATLT 184
++ L + +L+L+ V +D G Y C+ G + S L
Sbjct: 69 DSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLK 128
Query: 185 VQM----APIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWM---------------LE 225
V + ++++ G D C + W
Sbjct: 129 VTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPL 188
Query: 226 GNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTV 285
N++ I + G L I+ T A + C G A S T+
Sbjct: 189 ANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVW-CELATGQGELDADRSSTI 247
Score = 64.5 bits (156), Expect = 2e-11
Identities = 17/113 (15%), Positives = 29/113 (25%), Gaps = 24/113 (21%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFEN---------------- 51
+ +V G+ + C P + W +
Sbjct: 139 HVSTAEVVQVDEGNDITMTC-PCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGIT 197
Query: 52 ------SKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLV 98
+ R NL I+ ++ TD GR C + G D +L
Sbjct: 198 WFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGE-LDADRSSTILK 249
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage
capsid decorative protein, interaction with bacteria;
1.95A {Enterobacteria phage RB49}
Length = 304
Score = 119 bits (299), Expect = 9e-30
Identities = 46/314 (14%), Positives = 90/314 (28%), Gaps = 52/314 (16%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHPEP---TLVWKKNGHPIDFENSKRLRLVDGTNLA 64
+Q + AGD L P P T W K+ P + + L
Sbjct: 5 VSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNTA---------TLT 55
Query: 65 IQDSRKTDDGRYQCVVKNVAGTRESTDAVLRV--LVKPYIIRGPKDTTVSASSIIVFECS 122
+ D+ + G Y+ V++ V + I P+ VS+ + + +
Sbjct: 56 VADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVELHAT 115
Query: 123 VGG--------DAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAV 174
V + L W + + ++ + + + + G Y +
Sbjct: 116 VKFSGGKTPADNYELHYSWSKGEDVIDT-------TQDITIQEFTADKNGVYTVKVWGES 168
Query: 175 GKISASATLTVQMAPIVRERPSDLRLEV--GRDAVFLCGIE--------GSPPPST---- 220
+ASA+ + +A + ++ V G + + G P +
Sbjct: 169 EDSAASASTKIMLATMNVDQDVVESKTVALGNEISLNYVVSEDIVGDSSGMPNLTIKYNW 228
Query: 221 FWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAA---------PLIILCLGV 271
+ EG S G V + L ++ + I V
Sbjct: 229 YLQREGQLSPTLIGSEVGEALEGFSITPDGHLFKESATYDDTAKFWCVAKLYQQIEDETV 288
Query: 272 NAAGSDLARASLTV 285
A S + S+ V
Sbjct: 289 EVAASTSRKCSMEV 302
Score = 99.5 bits (247), Expect = 7e-23
Identities = 45/312 (14%), Positives = 90/312 (28%), Gaps = 55/312 (17%)
Query: 98 VKPYIIRGPKDTTVSASSIIVFECSVGGDA----VLTVHWKRLGSAMPEDRMSVLPSRSL 153
+ + A +V GD LT W + + + +L
Sbjct: 1 MAFTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENN------TATL 54
Query: 154 QLSDVRLEDAGEYVCEAENAVGKI-SASATLTVQMA--PIVRERPSDLRLEVGRDAVFLC 210
++D E+AG Y ++ S ++ A + P + D
Sbjct: 55 TVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVELHA 114
Query: 211 GIE---GSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIIL 267
++ G P + L Y + +++ + IQ + +
Sbjct: 115 TVKFSGGKTPADNYE-------LHYSWSKGEDVIDTTQD-----ITIQEFTADKN-GVYT 161
Query: 268 CLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQV---------- 317
+ A AS + N ++T+ L +E L V
Sbjct: 162 VKVWGESEDSAASASTKIMLATMNVDQD---VVESKTVALGNEISLNYVVSEDIVGDSSG 218
Query: 318 RGEGSVQW-WRGEREVGSGP------------RVNVTGDGSLVLTDVTKEDSGEYTCVVK 364
++++ W +RE P ++T DG L T +D+ ++ CV K
Sbjct: 219 MPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSITPDGHLFKESATYDDTAKFWCVAK 278
Query: 365 SPHGSASWSASL 376
+ +
Sbjct: 279 LYQQIEDETVEV 290
Score = 69.9 bits (170), Expect = 6e-13
Identities = 30/256 (11%), Positives = 67/256 (26%), Gaps = 54/256 (21%)
Query: 187 MAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTF----WMLEGNRSLIYPGDRVDNIQA 242
MA V + + G + G P + W +
Sbjct: 1 MAFTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQ--------------- 45
Query: 243 EITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPAN 302
++ L + + + A + + + + + V + P +
Sbjct: 46 PHENNTATLT-VADATSENA-GSYKVTVQDTDTMTSVESEVFLM--EEAELIVNITEPQH 101
Query: 303 QTLPLRSEARLRCQVRGEG----------SVQWWRGEREVGSGPRVNVTGDGSLVLTDVT 352
+ +++ L V+ G W +GE + + + + T
Sbjct: 102 FYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVID--------TTQDITIQEFT 153
Query: 353 KEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTAN 412
+ +G YT V ++ SAS + T + N
Sbjct: 154 ADKNGVYTVKVWGESEDSAASASTKIMLATMN-------------VDQDVVESKTVALGN 200
Query: 413 GLTLAWSRNNQIGSSS 428
++L + + I S
Sbjct: 201 EISLNYVVSEDIVGDS 216
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral
protein-immune system compl; HET: NAG SUC; 1.99A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B*
2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C*
3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A
3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Length = 184
Score = 115 bits (289), Expect = 1e-29
Identities = 27/186 (14%), Positives = 53/186 (28%), Gaps = 34/186 (18%)
Query: 19 AGDTALLECGPPRGHPEPTLVWKKNGHPI------------------DFENSKRLRLVDG 60
GDT L C WK + ++ + L
Sbjct: 9 KGDTVELTCTAS-QKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGN 67
Query: 61 TNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFE 120
L I++ + D Y C V++ E V + DT + +
Sbjct: 68 FPLIIKNLKIEDSDTYICEVEDQKE--EVQLLVFGLTANS-------DTHLLQGQSLTLT 118
Query: 121 CSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISAS 180
+ +V + ++ ++L +S + L+D+G + C K+
Sbjct: 119 LESPPGSSPSVQCRS------PRGKNIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFK 172
Query: 181 ATLTVQ 186
+ V
Sbjct: 173 IDIVVL 178
Score = 79.3 bits (195), Expect = 5e-17
Identities = 32/189 (16%), Positives = 51/189 (26%), Gaps = 36/189 (19%)
Query: 202 VGRDAVFLCGIEGSPPPSTFWM-------LEGNRSLIYPGDRVDNIQAEI----TSDGMN 250
G C W L S + G N +A+ G
Sbjct: 9 KGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNF 68
Query: 251 LLKIQNVSRT-AAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRS 309
L I+N+ + I C + L V G N +L G
Sbjct: 69 PLIIKNLKIEDSDTYI--CEVEDQKEE----VQLLVFGLTANSDTHLLQG---------Q 113
Query: 310 EARLRCQVRG--EGSVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPH 367
L + SVQ + + G +L ++ + +DSG +TC V
Sbjct: 114 SLTLTLESPPGSSPSVQCRSPRGKN-------IQGGKTLSVSQLELQDSGTWTCTVLQNQ 166
Query: 368 GSASWSASL 376
+ +
Sbjct: 167 KKVEFKIDI 175
Score = 78.9 bits (194), Expect = 7e-17
Identities = 23/192 (11%), Positives = 48/192 (25%), Gaps = 46/192 (23%)
Query: 117 IVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSR---------------------SLQL 155
+ C+ + HWK ++ L +
Sbjct: 13 VELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLII 72
Query: 156 SDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGS 215
++++ED+ Y+CE E+ VQ+ SD L G+
Sbjct: 73 KNLKIEDSDTYICEVEDQKE--------EVQLLVFGLTANSDTHLLQGQSLTLTLESPPG 124
Query: 216 PPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAG 275
PS +++ G + L + + + C +
Sbjct: 125 SSPSVQCRSPRGKNI--QGGKT--------------LSVSQLELQDS-GTWTCTVLQNQK 167
Query: 276 SDLARASLTVSG 287
+ + V
Sbjct: 168 KVEFKIDIVVLA 179
Score = 58.8 bits (142), Expect = 6e-10
Identities = 15/100 (15%), Positives = 26/100 (26%), Gaps = 12/100 (12%)
Query: 1 ISLLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG 60
+ LL + G + L P P++ + + G
Sbjct: 94 VQLLVFGLTANS-DTHLLQGQSLTLTLESP-PGSSPSVQCRSPRGKN---------IQGG 142
Query: 61 TNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKP 100
L++ D G + C V E + VL
Sbjct: 143 KTLSVSQLELQDSGTWTCTVLQNQKKVEFK-IDIVVLAFQ 181
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural
plasticity, cell-surface dimerizatio adhesion; HET: NAG
FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4
PDB: 1p53_A*
Length = 265
Score = 116 bits (292), Expect = 3e-29
Identities = 38/283 (13%), Positives = 75/283 (26%), Gaps = 37/283 (13%)
Query: 14 SQRVAAGDTALLECGPPRGHP--EPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKT 71
+ + + C P E + ++ + +
Sbjct: 12 PRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDE 71
Query: 72 DDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTV 131
R C V ++E+ + + P VS + + +C A +T+
Sbjct: 72 GTQRLTCAVILGNQSQETL-QTVTIYSFPAPNVILTKPEVSEGTEVTVKCEAHPRAKVTL 130
Query: 132 HWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKI----SASATLTVQM 187
+ + P L L ++ + C A V + + L V
Sbjct: 131 NGVPAQ--------PLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLY 182
Query: 188 APIVRER--PSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEIT 245
P + ER P + +C G+P P + +G L
Sbjct: 183 GPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPL--------------- 227
Query: 246 SDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGP 288
+ + V+R LC + G ++ V P
Sbjct: 228 ----PIGESVTVTRDLEG-TYLCRARSTQGEVTREVTVNVLSP 265
Score = 106 bits (265), Expect = 1e-25
Identities = 46/296 (15%), Positives = 76/296 (25%), Gaps = 51/296 (17%)
Query: 100 PYIIRGPKDTTVSASSIIVFECSVGGD---AVLTVHW----KRLGSAMPEDRMSVLPSRS 152
P ++ + + CS+ G + VH +RL + S S
Sbjct: 7 PQLVSPR---VLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKAS 63
Query: 153 LQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGI 212
+ ++ E C T+T+ P + + G + C
Sbjct: 64 VSVT-AEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSEGTEVTVKC-- 120
Query: 213 EGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVN 272
E P L G G + + C
Sbjct: 121 EAHPRAK--VTLNGVP---------------AQPLGPRAQLLLKATPEDNGRSFSCSATL 163
Query: 273 AAGSDLARAS----LTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRGEG--SVQWW 326
L + L V P P N T P S+ CQ G ++
Sbjct: 164 EVAGQLIHKNQTRELRVLYG---PRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCL 220
Query: 327 R-GEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESP 381
+ G + G VT++ G Y C +S G + ++ SP
Sbjct: 221 KDGTFPLPIG-----------ESVTVTRDLEGTYLCRARSTQGEVTREVTVNVLSP 265
Score = 103 bits (259), Expect = 8e-25
Identities = 34/186 (18%), Positives = 59/186 (31%), Gaps = 28/186 (15%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQ 66
V V+ G ++C HP NG P + L+ T
Sbjct: 100 APNVILTKPEVSEGTEVTVKC---EAHPRAK--VTLNGVPAQPLGPRAQLLLKAT----- 149
Query: 67 DSRKTDDGR-YQCVVKNVAG---TRESTDAVLRVLVKPYIIRG--PKDTTVSASSIIVFE 120
D+GR + C ++ LRVL P + P + T +S
Sbjct: 150 ---PEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPM 206
Query: 121 CSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISAS 180
C G+ + + + G+ + V + G Y+C A + G+++
Sbjct: 207 CQAWGNPLPELKCLKDGTFPLP---------IGESVTVTRDLEGTYLCRARSTQGEVTRE 257
Query: 181 ATLTVQ 186
T+ V
Sbjct: 258 VTVNVL 263
Score = 45.0 bits (106), Expect = 5e-05
Identities = 21/106 (19%), Positives = 37/106 (34%), Gaps = 14/106 (13%)
Query: 290 PNPPPVILFGPANQTLPLRSEARLRCQVRG-----EGSVQWWRGEREVGSGPRVNVTGDG 344
P PP ++ L + ++ + C + G E V G++ + P V D
Sbjct: 3 PATPPQLVSPR---VLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLN--PTVTYGNDS 57
Query: 345 ----SLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNI 386
+ V E + TC V + S ++ S PN+
Sbjct: 58 FSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNV 103
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion;
2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 184
Score = 112 bits (282), Expect = 1e-28
Identities = 33/183 (18%), Positives = 57/183 (31%), Gaps = 23/183 (12%)
Query: 17 VAAGDTALLECGPPRGHPEPTLV-WKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGR 75
G LL C E T W K G + + + G + G
Sbjct: 10 EDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDA------LPGQKTEFKVDSDDQWGE 63
Query: 76 YQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGD-AVLTVHWK 134
Y CV A +++ P + ++ + C V W
Sbjct: 64 YSCVFLPEPMGT----ANIQLHGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWY 119
Query: 135 RLGSAMPEDRMSVLPSR----------SLQLSDVRLE-DAGEYVCEAENAVGKISASATL 183
++ + + M+ SR L + ++ +E D G+Y C ++ G A TL
Sbjct: 120 KITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITL 179
Query: 184 TVQ 186
V+
Sbjct: 180 RVR 182
Score = 107 bits (267), Expect = 1e-26
Identities = 43/180 (23%), Positives = 71/180 (39%), Gaps = 9/180 (5%)
Query: 109 TTVSASSIIVFECSVGGDA--VLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEY 166
T S I+ CS+ A V W + G + ED LP + + + GEY
Sbjct: 8 TVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDA---LPGQKTEFKVDSDDQWGEY 64
Query: 167 VCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTF-WMLE 225
C +A + + P V+ S + G A+ +C E PP + + W
Sbjct: 65 SCVFLPEPM---GTANIQLHGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKI 121
Query: 226 GNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTV 285
+ + ++ +S G + L I+N++ A P C G ++ GSD A +L V
Sbjct: 122 TDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 181
Score = 72.0 bits (176), Expect = 1e-14
Identities = 30/195 (15%), Positives = 60/195 (30%), Gaps = 37/195 (18%)
Query: 201 EVGRDAVFLCGIEGSPPPST--FWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVS 258
++G + C + S T W+ G ++ + + + S
Sbjct: 11 DLGSKILLTCSLNDSATEVTGHRWLKGGVV-----------LKEDALPGQK--TEFKVDS 57
Query: 259 RTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVR 318
C+ + A++ + PP + +++ + A L C+
Sbjct: 58 DDQWGEYS-CVFLPEPM---GTANIQLH-----GPPRVKAVKSSEHINEGETAMLVCKSE 108
Query: 319 GE---GSVQWWRGEREV------GSGPRVNVTGDG---SLVLTDVT-KEDSGEYTCVVKS 365
W++ GS R V+ L + ++ + D G+Y C S
Sbjct: 109 SVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTS 168
Query: 366 PHGSASWSASLRFES 380
GS +LR S
Sbjct: 169 SKGSDQAIITLRVRS 183
Score = 53.5 bits (128), Expect = 3e-08
Identities = 21/99 (21%), Positives = 39/99 (39%), Gaps = 11/99 (11%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLV-WKKNGH----PIDFENSKRLRLVDGT 61
+ S+ + G+TA+L C P T W K + + R +
Sbjct: 85 RVKAVKSSEHINEGETAMLVC-KSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQ 143
Query: 62 N---LAIQD-SRKTDDGRYQCVVKNVAGTRESTDAVLRV 96
L I++ + + D G+Y+C + G+ ++ LRV
Sbjct: 144 GRSELHIENLNMEADPGQYRCNGTSSKGSDQAI-ITLRV 181
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit;
immunoglobulin fold, glycoprotein, IGE-binding Pro
immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A*
1j88_A* 1j89_A* 1j87_A*
Length = 176
Score = 111 bits (280), Expect = 1e-28
Identities = 36/182 (19%), Positives = 64/182 (35%), Gaps = 19/182 (10%)
Query: 10 VQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSR 69
+ P R+ G+ L C + W NG + NS +L I +++
Sbjct: 9 LNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETNS---------SLNIVNAK 59
Query: 70 KTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSV-GGDAV 128
D G Y+C + V S L V +++ V + C V
Sbjct: 60 FEDSGEYKCQHQQVNE---SEPVYLEVFSDWLLLQ-ASAEVVMEGQPLFLRCHGWRNWDV 115
Query: 129 LTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKI-SASATLTVQM 187
V + + G A+ + ++ +++ +ED+G Y C + S +TV
Sbjct: 116 YKVIYYKDGEALK----YWYENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIK 171
Query: 188 AP 189
AP
Sbjct: 172 AP 173
Score = 74.9 bits (184), Expect = 1e-15
Identities = 19/100 (19%), Positives = 37/100 (37%), Gaps = 7/100 (7%)
Query: 1 ISLLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG 60
+ + + +Q ++ V G L C R +++ K+G + +
Sbjct: 81 LEVFSDWLLLQASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWYE-------N 133
Query: 61 TNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKP 100
N++I ++ D G Y C K ES + V+ P
Sbjct: 134 HNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKAP 173
Score = 73.8 bits (181), Expect = 3e-15
Identities = 32/195 (16%), Positives = 62/195 (31%), Gaps = 25/195 (12%)
Query: 96 VLVKPYIIRGPKDTTVSASSIIVFECSVGGD-AVLTVHWKRLGSAMPEDRMSVLPSRSLQ 154
V KP + P + + C+ V + W GS E + SL
Sbjct: 1 VPQKPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEET------NSSLN 54
Query: 155 LSDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEG 214
+ + + ED+GEY C+ + S L V ++ + +++ +E G+ C
Sbjct: 55 IVNAKFEDSGEYKCQHQQVNE--SEPVYLEVFSDWLLLQASAEVVME-GQPLFLRCHGWR 111
Query: 215 SPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAA 274
+ + +L Y + + + I N + + C G
Sbjct: 112 NWDVYKVIYYKDGEALKYWYENHN-------------ISITNATVEDSGTYY-CTGKVWQ 157
Query: 275 GSDL-ARASLTVSGP 288
++TV
Sbjct: 158 LDYESEPLNITVIKA 172
Score = 59.1 bits (143), Expect = 4e-10
Identities = 30/196 (15%), Positives = 47/196 (23%), Gaps = 33/196 (16%)
Query: 185 VQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEI 244
V P V P R+ G + C S+
Sbjct: 1 VPQKPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETNSS-------- 52
Query: 245 TSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQT 304
L I N + C S+ + ++ Q
Sbjct: 53 -------LNIVNAKFEDSG-EYKCQHQQVNESEPVYLEVFSDWLLLQASAEVVM--EGQP 102
Query: 305 LPLRSEARLRCQVRGEGS---VQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTC 361
L LRC V +++ + + ++ +T+ T EDSG Y C
Sbjct: 103 L------FLRCHGWRNWDVYKVIYYKDGEALKYWYE-----NHNISITNATVEDSGTYYC 151
Query: 362 VVKSPHGSASWSASLR 377
K S L
Sbjct: 152 TGKVWQLDYE-SEPLN 166
Score = 54.5 bits (131), Expect = 1e-08
Identities = 21/138 (15%), Positives = 42/138 (30%), Gaps = 21/138 (15%)
Query: 292 PPPVILFGPANQTLPLRSEARLRCQVRG---EGSVQWWRGEREVGSGPRVNVTGDGSLVL 348
P + P + L C S +W+ + SL +
Sbjct: 3 QKPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSE-------ETNSSLNI 55
Query: 349 TDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTL-- 406
+ EDSGEY C + + S + E ++ + +A G P L
Sbjct: 56 VNAKFEDSGEYKCQHQ----QVNESEPVYLEVFSDWLL--LQASAEVVMEGQPL--FLRC 107
Query: 407 -VNQTANGLTLAWSRNNQ 423
+ + + + ++ +
Sbjct: 108 HGWRNWDVYKVIYYKDGE 125
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin,
beta-sandwich, mceacam1A - immunoglobulin FO spike NTD -
galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus
musculus} PDB: 1l6z_A*
Length = 208
Score = 112 bits (282), Expect = 2e-28
Identities = 38/204 (18%), Positives = 61/204 (29%), Gaps = 23/204 (11%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPI-----------------DF 49
E ++ +VA + LL W K
Sbjct: 1 EVTIEAVPPQVAEDNNVLLLVHNL-PLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQ 59
Query: 50 ENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRV-LVKPYIIRGPKD 108
S R + +L Q D G Y + + R V +
Sbjct: 60 AYSGREIIYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTN 119
Query: 109 TTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPE-DRMSVLPS-RSLQLSDVRLEDAGEY 166
TTV + C + W ++ +RM++ + L++ ++ EDAGEY
Sbjct: 120 TTVKELDSVTLTCLSNDIGA-NIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEY 178
Query: 167 VCEAENAVG-KISASATLTVQMAP 189
CE N V + S S L + P
Sbjct: 179 QCEISNPVSVRRSNSIKLDIIFDP 202
Score = 78.2 bits (192), Expect = 2e-16
Identities = 31/206 (15%), Positives = 63/206 (30%), Gaps = 18/206 (8%)
Query: 195 PSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLI-----YPGDRVDNIQAEITSDGM 249
++ + + L + W ++ + + N + S
Sbjct: 6 AVPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGRE 65
Query: 250 NL-----LKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQT 304
+ L Q ++ + + R TV P N T
Sbjct: 66 IIYSNGSLLFQMITMKDM-GVYTLDMTDENYR---RTQATVRFHVHQPVTQPFLQVTNTT 121
Query: 305 LPLRSEARLRCQVRGEG-SVQWWRGEREVGSGPRVNVTGDGS-LVLTDVTKEDSGEYTCV 362
+ L C G ++QW + + R+ ++ + S L + + +ED+GEY C
Sbjct: 122 VKELDSVTLTCLSNDIGANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCE 181
Query: 363 VKSPHGSA-SWSASLR-FESPTNPNI 386
+ +P S S L P + +
Sbjct: 182 ISNPVSVRRSNSIKLDIIFDPHHHHH 207
Score = 77.4 bits (190), Expect = 3e-16
Identities = 21/98 (21%), Positives = 37/98 (37%), Gaps = 5/98 (5%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRL-VDGTNLAIQ 66
+Q + V D+ L C + W N + ++R+ L + + L I
Sbjct: 113 PFLQVTNTTVKELDSVTLTCLS--NDIGANIQWLFNSQSLQL--TERMTLSQNNSILRID 168
Query: 67 DSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIR 104
++ D G YQC + N R S L ++ P+
Sbjct: 169 PIKREDAGEYQCEISNPVSVRRSNSIKLDIIFDPHHHH 206
Score = 46.2 bits (109), Expect = 1e-05
Identities = 23/137 (16%), Positives = 43/137 (31%), Gaps = 25/137 (18%)
Query: 309 SEARLRCQVRGE--GSVQWWRGEREVGSG-------------------PRVNVTGDGSLV 347
+ L G+ W++G R + +GSL+
Sbjct: 15 NNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLL 74
Query: 348 LTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLV 407
+T +D G YT + + + A++RF F + + TL
Sbjct: 75 FQMITMKDMGVYTLDMTDENYRRT-QATVRFHVHQPVTQPFLQVTNTTVKELDSV--TLT 131
Query: 408 NQTAN-GLTLAWSRNNQ 423
+ + G + W N+Q
Sbjct: 132 CLSNDIGANIQWLFNSQ 148
>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin
type III domain, alternative cell membrane, disulfide
bond; 1.90A {Homo sapiens} PDB: 3l5j_A
Length = 290
Score = 113 bits (285), Expect = 7e-28
Identities = 46/337 (13%), Positives = 86/337 (25%), Gaps = 63/337 (18%)
Query: 398 PGPPTKPTLVNQTANG----LTLAWSRNNQI-GSSSLLGYQVEMYSRPLPSSSPSGDTAT 452
P+ ++ + + L W + +L Y+V +
Sbjct: 5 SKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTR-------------- 50
Query: 453 ATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFS 512
W N +T Y + N G S + L+
Sbjct: 51 --WKSHLQNYTVNATKLTVNLTNDRYLATLTVRNLVGKSDAAVLT--------------- 93
Query: 513 EGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPMTSTSVKLTWEILNTDYI 572
+ + P + + W
Sbjct: 94 -----------------------IPACDFQATHPVMDLKAFP-KDNMLWVEWTTPRESVK 129
Query: 573 EGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLR 632
+ + + D + +L LA Y + P + G P +++
Sbjct: 130 KYILEWCVLSDKAPCITDWQQEDGTVHRTYLRGNLAESKCYLITVTPVYADGPGSPESIK 189
Query: 633 AVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINM 692
+ PS P + + +L+W PV NG IR Y I + +
Sbjct: 190 -AYLKQAPPSKGPTVR-TKKVGKNEAVLEWDQLPVDVQNGFIRNYTIFYRTIIGNE-TAV 246
Query: 693 TVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSR 729
V +S L++L++ Y V +AA G
Sbjct: 247 NVDSSHTEYTLSSLTSDTLYMVRMAAYTDEGGKDGPE 283
Score = 59.4 bits (144), Expect = 1e-09
Identities = 29/108 (26%), Positives = 44/108 (40%), Gaps = 12/108 (11%)
Query: 638 ECEPSGVP----QLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMT 693
E PS P ++ +V L WK P NG I Y++ + + L N T
Sbjct: 1 EDRPSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKSH-LQNYT 59
Query: 694 VSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGPEP 741
V+A+ T+ LTN RY +L N G A+L++ +
Sbjct: 60 VNATKLTVNLTND----RYLATLTVRNLVGKSD---AAVLTIPACDFQ 100
Score = 51.3 bits (123), Expect = 7e-07
Identities = 34/247 (13%), Positives = 63/247 (25%), Gaps = 63/247 (25%)
Query: 398 PGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVR 457
P N L + W+ + S+ Y +E + L +P W +
Sbjct: 101 ATHPVMDLKAFPKDNMLWVEWTTPRE----SVKKYILE-W-CVLSDKAPC----ITDWQQ 150
Query: 458 VATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKG 517
V NL Y V + + G +P + + +
Sbjct: 151 EDGTVHR-TYLRGNLAESKCYLITVTPVYADGPGSPESIK------------AYLK---- 193
Query: 518 IFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPMTSTSVKLTWEILNTDYIEGV-- 575
+ P +G K + L W+ L D G
Sbjct: 194 ---QAPPSKGPT--------------------VRTKKVGKNEAVLEWDQLPVDVQNGFIR 230
Query: 576 --YIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPF--FGSVDGKPSNL 631
I+ R + + V + + ++ L + Y + + G DG
Sbjct: 231 NYTIFYRTIIGNET----AVNVDSSHTEYTLSSLTSDTLYMVRMAAYTDEGGKDGPEFT- 285
Query: 632 RAVRTLE 638
T +
Sbjct: 286 --FTTPK 290
>3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain,
fibron type III, cell adhesion; 1.80A {Homo sapiens}
PDB: 1x5k_A
Length = 211
Score = 108 bits (272), Expect = 6e-27
Identities = 37/190 (19%), Positives = 65/190 (34%), Gaps = 14/190 (7%)
Query: 551 EVKPMTSTSVKLTWEILNTDYIEGV-----YIYSRGLDPPASVAMLTVLHAGEASGFLVT 605
+ ++ ++++TW + + + Y + PA+ +LVT
Sbjct: 12 QASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNA--NATTLSYLVT 69
Query: 606 GLAHYSRYEFFLVPFFGSVDGKPSNLRAVRTLECEPSGVPQLTD--PVLLNATSVLLKWK 663
GL + YEF ++ G S T E P+ P+ ++++ W+
Sbjct: 70 GLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFELVPTSPPKDVTVVSKEGKPKTIIVNWQ 129
Query: 664 PPPVGTHNGVIRTYQI---IVGGGNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATN 720
PP NG I Y I + V + T + L+ Y + A N
Sbjct: 130 PPS--EANGKITGYIIYYSTDVNAEIHDWVIEPVVGNRLTHQIQELTLDTPYYFKIQARN 187
Query: 721 RAGTGPYSRP 730
G GP S
Sbjct: 188 SKGMGPMSEA 197
Score = 62.5 bits (152), Expect = 4e-11
Identities = 17/93 (18%), Positives = 31/93 (33%), Gaps = 2/93 (2%)
Query: 641 PSGVPQLTDPVLLNATSVLLKWKPP--PVGTHNGVIRTYQIIVGGGNNSALINMTVSAST 698
P P +L+ ++ + W P R Y + + +A+T
Sbjct: 4 PMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANATT 63
Query: 699 PTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPA 731
+ L+T L Y S+ T + +S A
Sbjct: 64 LSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTA 96
Score = 56.7 bits (137), Expect = 4e-09
Identities = 32/249 (12%), Positives = 55/249 (22%), Gaps = 51/249 (20%)
Query: 398 PGPPTKPTLVNQTANGLTLAWSR---NNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATAT 454
PP + + + + W+ + Y V + ++ AT
Sbjct: 5 MMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANATTL 64
Query: 455 WVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEG 514
VT L Y F V S S GT E + +
Sbjct: 65 SY-----------LVTGLKPNTLYEFSVMVTKGRRSSTWSM-----TAHGTTFELVPT-- 106
Query: 515 GKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPMTSTSVKLTWEILNTDY--I 572
+ + K ++ + W+ + I
Sbjct: 107 -------------------SPPKDVT---------VVSKEGKPKTIIVNWQPPSEANGKI 138
Query: 573 EGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLR 632
G IY + G + L + Y F + G S
Sbjct: 139 TGYIIYYSTDVNAEIHDWVIEPVVGNRLTHQIQELTLDTPYYFKIQARNSKGMGPMSEAV 198
Query: 633 AVRTLECEP 641
RT +
Sbjct: 199 QFRTPKAHH 207
Score = 43.3 bits (102), Expect = 1e-04
Identities = 21/110 (19%), Positives = 33/110 (30%), Gaps = 21/110 (19%)
Query: 395 STYPGPPTKP------TLVNQTANGLTLAW---SRNNQIGSSSLLGYQVEMYSRPLPSSS 445
+T+ PT P + + W S N + GY + S
Sbjct: 99 TTFELVPTSPPKDVTVVSKEGKPKTIIVNWQPPSEANGK----ITGYIIYY--------S 146
Query: 446 PSGDTATATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSP 495
+ WV + LT+ Y F ++A NS G+ S
Sbjct: 147 TDVNAEIHDWVIEPVVGNRLTHQIQELTLDTPYYFKIQARNSKGMGPMSE 196
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor,
CD32, immunoglobulin superfamily, low responder
polymorphism, cell membrane; HET: NAG; 1.50A {Homo
sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C*
2fcb_A
Length = 170
Score = 106 bits (266), Expect = 1e-26
Identities = 32/179 (17%), Positives = 55/179 (30%), Gaps = 19/179 (10%)
Query: 10 VQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSR 69
++P V D+ L C R ++ W NG+ I +
Sbjct: 9 LEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQ---------PSYRFKAN 59
Query: 70 KTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSV-GGDAV 128
D G Y C T S L VL + +++ P +I + C +
Sbjct: 60 NNDSGEYTCQTGQ---TSLSDPVHLTVLFEWLVLQTPHLEFQEGETI-MLRCHSWKDKPL 115
Query: 129 LTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKI-SASATLTVQ 186
+ V + + G + + + +G+Y C S T+TVQ
Sbjct: 116 VKVTFFQNGKSQK----FSHLDPTFSIPQANHSHSGDYHCTGNIGYTLFSSKPVTITVQ 170
Score = 77.6 bits (191), Expect = 1e-16
Identities = 23/138 (16%), Positives = 40/138 (28%), Gaps = 10/138 (7%)
Query: 99 KPYIIRGPKDTTVSASSIIVFECSVGGD-AVLTVHWKRLGSAMPEDRMSVLPSRSLQLSD 157
K + P V + C ++ W G+ +P ++
Sbjct: 4 KAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTH------TQPSYRFK 57
Query: 158 VRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPP 217
D+GEY C+ +S LTV +V + P E G + C P
Sbjct: 58 ANNNDSGEYTCQTGQ--TSLSDPVHLTVLFEWLVLQTPHLEFQE-GETIMLRCHSWKDKP 114
Query: 218 PSTFWMLEGNRSLIYPGD 235
+ +S +
Sbjct: 115 LVKVTFFQNGKSQKFSHL 132
Score = 67.2 bits (164), Expect = 6e-13
Identities = 15/89 (16%), Positives = 27/89 (30%), Gaps = 7/89 (7%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQD 67
+Q G+T +L C + P + + +NG F + +I
Sbjct: 88 LVLQTPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFSHL-------DPTFSIPQ 140
Query: 68 SRKTDDGRYQCVVKNVAGTRESTDAVLRV 96
+ + G Y C S + V
Sbjct: 141 ANHSHSGDYHCTGNIGYTLFSSKPVTITV 169
Score = 59.8 bits (145), Expect = 2e-10
Identities = 26/187 (13%), Positives = 49/187 (26%), Gaps = 34/187 (18%)
Query: 189 PIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTF-WMLEGNRSLIYPGDRVDNIQAEITSD 247
+++ P + + C SP + W GN I +
Sbjct: 5 AVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNL---------------IPTH 49
Query: 248 GMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPL 307
+ + C + SD LTV ++L P +
Sbjct: 50 TQPSY-RFKANNNDSGEYT-CQTGQTSLSDPVH--LTVL-----FEWLVLQTPHLEFQEG 100
Query: 308 RSEARLRCQVRGEGS---VQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVK 364
+ LRC + V +++ + D + + SG+Y C
Sbjct: 101 ET-IMLRCHSWKDKPLVKVTFFQNGKSQKFSHL-----DPTFSIPQANHSHSGDYHCTGN 154
Query: 365 SPHGSAS 371
+ S
Sbjct: 155 IGYTLFS 161
Score = 54.8 bits (132), Expect = 1e-08
Identities = 18/85 (21%), Positives = 23/85 (27%), Gaps = 10/85 (11%)
Query: 292 PPPVILFGPANQTLPLRSEARLRCQVRG---EGSVQWWRGEREVGSGPRVNVTGDGSLVL 348
P V+ P + L CQ S+QW+ + T
Sbjct: 3 PKAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIP-------THTQPSYR 55
Query: 349 TDVTKEDSGEYTCVVKSPHGSASWS 373
DSGEYTC S
Sbjct: 56 FKANNNDSGEYTCQTGQTSLSDPVH 80
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo
sapiens} PDB: 2x1x_R*
Length = 213
Score = 106 bits (266), Expect = 3e-26
Identities = 26/191 (13%), Positives = 56/191 (29%), Gaps = 18/191 (9%)
Query: 17 VAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRY 76
T ++ C + +L + + R+ I + G
Sbjct: 21 ENKNKTVVIPCLGSISNLNVSLCARYPEKRF-VPDGNRISWDSKKGFTIPSYMISYAGMV 79
Query: 77 QCVVKNVAGTRESTDAVLRVLVKPY---IIRGPKDTTVSASSIIVFECSVGGD--AVLTV 131
C K + +S ++ V+ ++ +S +V C+ + +
Sbjct: 80 FCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDF 139
Query: 132 HWKRLGSAMPEDRMSVLPSR------------SLQLSDVRLEDAGEYVCEAENAVGKISA 179
+W+ S ++ + +L + V D G Y C A + +
Sbjct: 140 NWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKN 199
Query: 180 SATLTVQMAPI 190
S + V PI
Sbjct: 200 STFVRVHEDPI 210
Score = 76.4 bits (187), Expect = 8e-16
Identities = 34/206 (16%), Positives = 60/206 (29%), Gaps = 26/206 (12%)
Query: 189 PIVRERPSDLRLEV--GRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITS 246
V ++ + + + V C S + + + G+R I+
Sbjct: 8 ASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNR-------ISW 60
Query: 247 DGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLP 306
D I + + A ++ C S + + V V+L L
Sbjct: 61 DSKKGFTIPSYMISYAGMVF-CEAKINDESYQSIMYIVVVVG-YRIYDVVLSPSHGIELS 118
Query: 307 LRSEARLRCQVRGEGS----VQWWRGEREVGSGPRVN-----------VTGDGSLVLTDV 351
+ + L C R E + W + VN +L + V
Sbjct: 119 VGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGV 178
Query: 352 TKEDSGEYTCVVKSPHGSASWSASLR 377
T+ D G YTC S + S +R
Sbjct: 179 TRSDQGLYTCAASSGLMTKKNSTFVR 204
Score = 41.3 bits (96), Expect = 6e-04
Identities = 14/117 (11%), Positives = 26/117 (22%), Gaps = 10/117 (8%)
Query: 282 SLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQV-RGEGSVQWWR---GEREVGSGPR 337
S ++ V + N+T + C +V +R V G R
Sbjct: 4 SPFIASVSDQHGVVYITENKNKT------VVIPCLGSISNLNVSLCARYPEKRFVPDGNR 57
Query: 338 VNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEP 394
++ + +G C K S +
Sbjct: 58 ISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHG 114
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in
U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 102 bits (257), Expect = 5e-26
Identities = 33/117 (28%), Positives = 51/117 (43%), Gaps = 4/117 (3%)
Query: 288 PDPNPPPVILFGPANQTLPLRSEARLRCQVRG--EGSVQWWRGEREV-GSGPRVNVTGDG 344
+ PPVI GP NQT+ + L C G ++ W + V R+ +G
Sbjct: 3 SGSSGPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENG 62
Query: 345 SLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPP 401
L + D+G YTC+ +P G A+WSA + + P + R +P+ P P
Sbjct: 63 VLQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVP-VQPPRPTDPNLIPSAP 118
Score = 95.6 bits (238), Expect = 1e-23
Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 3/107 (2%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQ 66
R P +Q VA T +L C G P PT++W+K+G + R++ ++ L I+
Sbjct: 10 VIRQGPVNQTVAVDGTFVLSC-VATGSPVPTILWRKDGVLVS-TQDSRIKQLENGVLQIR 67
Query: 67 DSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSA 113
++ D GRY C+ +G + A + V ++ P+ T +
Sbjct: 68 YAKLGDTGRYTCIASTPSGEATWS-AYIEVQEFGVPVQPPRPTDPNL 113
Score = 94.4 bits (235), Expect = 3e-23
Identities = 31/119 (26%), Positives = 49/119 (41%), Gaps = 11/119 (9%)
Query: 100 PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED--RMSVLPSRSLQLSD 157
P I +GP + TV+ V C G V T+ W++ G + R+ L + LQ+
Sbjct: 9 PVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQIRY 68
Query: 158 VRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSP 216
+L D G Y C A G+ + SA + VQ + + P + I +P
Sbjct: 69 AKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVPVQPPRPTDPNL---------IPSAP 118
Score = 59.4 bits (144), Expect = 8e-11
Identities = 24/118 (20%), Positives = 42/118 (35%), Gaps = 12/118 (10%)
Query: 188 APIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSD 247
P++R+ P + + V V C GSP P+ W +G + R+ + +
Sbjct: 8 PPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDG-VLVSTQDSRI-----KQLEN 61
Query: 248 GMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTL 305
G+ L+I+ C+ +G A + V PV P + L
Sbjct: 62 GV--LQIRYAKLGDTGRYT-CIASTPSGEATWSAYIEVQEF---GVPVQPPRPTDPNL 113
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr
virus}
Length = 201
Score = 105 bits (263), Expect = 6e-26
Identities = 28/191 (14%), Positives = 51/191 (26%), Gaps = 29/191 (15%)
Query: 17 VAAGDTALLECGPPR--GHPEPTLVWKKNGHP---------------IDFENSKRLRLVD 59
G+ L R PE + W K G I++ +
Sbjct: 3 AFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHR 62
Query: 60 GTN---LAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSI 116
N L + + + DG Y C +K + L V+ + + + S+
Sbjct: 63 SANTFFLVVTAANISHDGNYLCRMKLGET-EVTKQEHLSVVKPLTLSVHSERSQFPDFSV 121
Query: 117 IVFECSVGGDAVLTVHWKRLGSAMPED-----RMSVLPSRSLQLS---DVRLEDAGEYVC 168
+ C+V V W P + SL ++ + C
Sbjct: 122 LTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTC 181
Query: 169 EAENAVGKISA 179
+N +
Sbjct: 182 VGKNDKEEAHG 192
Score = 98.9 bits (246), Expect = 1e-23
Identities = 28/204 (13%), Positives = 59/204 (28%), Gaps = 22/204 (10%)
Query: 80 VKNVAGTRES-TDAVLRVLVKP-----YIIRGPKDTTVSASSIIVFECSVGGDAVLTVHW 133
V G R + T RV + P + GP + V + +
Sbjct: 1 VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRM-HHDVIFIEWPFRGFFD 59
Query: 134 KRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRE 193
+ + L ++ + G Y+C + +++ L+V +
Sbjct: 60 IHRSAN----------TFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKPLTLSV 109
Query: 194 RPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDG-MNLL 252
+ C + P P W++ + P N DG +++
Sbjct: 110 HSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEG---VEPAPTAANGGVMKEKDGSLSVA 166
Query: 253 KIQNVSRTAAPLIILCLGVNAAGS 276
++ + L + C+G N
Sbjct: 167 VDLSLPKPWH-LPVTCVGKNDKEE 189
Score = 84.7 bits (209), Expect = 8e-19
Identities = 31/193 (16%), Positives = 46/193 (23%), Gaps = 31/193 (16%)
Query: 202 VGRDAVFLC---GIEGSPPPSTFWMLEGNRS-----------LIYPGDRVDNIQAEITSD 247
+G + P W G +I+ S
Sbjct: 5 LGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSA 64
Query: 248 GMNLLKIQNVSRT-AAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLP 306
L + + + + C + L+V P + P
Sbjct: 65 NTFFLVVTAANISHDGNYL--CRMKLGETEVTKQEHLSV-----VKPLTLSVHSERSQFP 117
Query: 307 LRSEARLRCQVRG--EGSVQWWRGEREVGS----GPRVNVTGDGSL---VLTDVTKEDSG 357
S + C V VQW E + V DGSL V + K
Sbjct: 118 DFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHL 177
Query: 358 EYTCVVKSPHGSA 370
TCV K+ A
Sbjct: 178 PVTCVGKNDKEEA 190
Score = 64.3 bits (156), Expect = 9e-12
Identities = 12/83 (14%), Positives = 21/83 (25%), Gaps = 6/83 (7%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGH--PIDFENSKRLRLVDGTNLAI 65
V + + + C P P + W P + + +L++
Sbjct: 107 LSVHSERSQFPDFSVLTVTC-TVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSV 165
Query: 66 QDS---RKTDDGRYQCVVKNVAG 85
K CV KN
Sbjct: 166 AVDLSLPKPWHLPVTCVGKNDKE 188
Score = 44.3 bits (104), Expect = 6e-05
Identities = 17/103 (16%), Positives = 22/103 (21%), Gaps = 25/103 (24%)
Query: 304 TLPLRSEARLRCQVRG-----EGSVQWWR--------------------GEREVGSGPRV 338
T L L R E V W++ G
Sbjct: 2 TAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIH 61
Query: 339 NVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESP 381
LV+T G Y C +K + L P
Sbjct: 62 RSANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKP 104
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein;
2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Length = 154
Score = 102 bits (256), Expect = 2e-25
Identities = 30/141 (21%), Positives = 55/141 (39%), Gaps = 8/141 (5%)
Query: 65 IQDSRKTDDGRYQCVVKNVAGTREST---DAVLRVLVKPYIIRGPKDTTVSASSIIVFEC 121
+ + + + N ++ A + VKPY + D V S F+C
Sbjct: 4 MSGRKASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFDC 63
Query: 122 SVGGDAVLTVHWKRLGSAMPED-RMSVLPSR----SLQLSDVRLEDAGEYVCEAENAVGK 176
V G V W + + + E + SL +S+V +D +Y C+A N++G+
Sbjct: 64 KVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGE 123
Query: 177 ISASATLTVQMAPIVRERPSD 197
+ +A L V+ E +
Sbjct: 124 ATCTAELLVETMGKEGEGEGE 144
Score = 84.5 bits (209), Expect = 4e-19
Identities = 26/108 (24%), Positives = 43/108 (39%), Gaps = 8/108 (7%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV---DGT-N 62
F V G A +C G+P+P ++W K+ +P+ + S+ ++ +G +
Sbjct: 43 YFTKTILDMEVVEGSAARFDC-KVEGYPDPEVMWFKDDNPV--KESRHFQIDYDEEGNCS 99
Query: 63 LAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTT 110
L I + DD +Y C N G T A L V G +
Sbjct: 100 LTISEVCGDDDAKYTCKAVNSLGEATCT-AELLVETMGKEGEGEGEGE 146
Score = 83.0 bits (205), Expect = 1e-18
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 7/138 (5%)
Query: 254 IQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGP-DPNPPPVILFGPANQTLPLRSEAR 312
I +S A +NA + A L P+ P + + S AR
Sbjct: 1 ISGMSGRKASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAAR 60
Query: 313 LRCQVRG--EGSVQWWRGEREVGSGPRVNVTGDG----SLVLTDVTKEDSGEYTCVVKSP 366
C+V G + V W++ + V + D SL +++V +D +YTC +
Sbjct: 61 FDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNS 120
Query: 367 HGSASWSASLRFESPTNP 384
G A+ +A L E+
Sbjct: 121 LGEATCTAELLVETMGKE 138
Score = 76.8 bits (189), Expect = 1e-16
Identities = 29/147 (19%), Positives = 44/147 (29%), Gaps = 12/147 (8%)
Query: 155 LSDVRLEDAGEYVC----EAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLC 210
+S + + + EN + A + P + D+ + G A F C
Sbjct: 4 MSGRKASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFDC 63
Query: 211 GIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRT-AAPLIILCL 269
+EG P P W + N + Q + +G L I V A C
Sbjct: 64 KVEGYPDPEVMWFKDDNP--VKESRH---FQIDYDEEGNCSLTISEVCGDDDA--KYTCK 116
Query: 270 GVNAAGSDLARASLTVSGPDPNPPPVI 296
VN+ G A L V
Sbjct: 117 AVNSLGEATCTAELLVETMGKEGEGEG 143
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta
sandwich, immunoglobulin-like, immune system receptor;
1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A
1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Length = 175
Score = 101 bits (254), Expect = 5e-25
Identities = 29/179 (16%), Positives = 57/179 (31%), Gaps = 19/179 (10%)
Query: 10 VQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSR 69
++P+ V D+ L+C + + W N I ++ I +
Sbjct: 12 LEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLIS---------SQASSYFIDAAT 62
Query: 70 KTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSV-GGDAV 128
D G Y+C + S L V + +++ P+ I C A+
Sbjct: 63 VNDSGEYRCQTNL---STLSDPVQLEVHIGWLLLQAPRWVFKEEDP-IHLRCHSWKNTAL 118
Query: 129 LTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKI-SASATLTVQ 186
V + + G + + L+D+G Y C + S + +T+
Sbjct: 119 HKVTYLQNGKDRKYFH----HNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITIT 173
Score = 73.8 bits (181), Expect = 3e-15
Identities = 20/138 (14%), Positives = 41/138 (29%), Gaps = 10/138 (7%)
Query: 99 KPYIIRGPKDTTVSASSIIVFECSVGGD-AVLTVHWKRLGSAMPEDRMSVLPSRSLQLSD 157
K + P+ +V + +C + W S + + S +
Sbjct: 7 KAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQ------ASSYFIDA 60
Query: 158 VRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPP 217
+ D+GEY C+ +S L V + ++ + P + E C +
Sbjct: 61 ATVNDSGEYRCQTNL--STLSDPVQLEVHIGWLLLQAPRWVFKE-EDPIHLRCHSWKNTA 117
Query: 218 PSTFWMLEGNRSLIYPGD 235
L+ + Y
Sbjct: 118 LHKVTYLQNGKDRKYFHH 135
Score = 52.2 bits (125), Expect = 8e-08
Identities = 25/143 (17%), Positives = 43/143 (30%), Gaps = 21/143 (14%)
Query: 292 PPPVILFGPANQTLPLRSEARLRCQVRG---EGSVQWWRGEREVGSGPRVNVTGDGSLVL 348
P V+ P ++ + L+CQ + S QW+ E + + S +
Sbjct: 6 PKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLIS-------SQASSYFI 58
Query: 349 TDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVN 408
T DSGEY C + S L + +AP P L
Sbjct: 59 DAATVNDSGEYRCQTN--LSTLSDPVQLEVHIG--WLL--LQAPRWVFKEEDPI--HLRC 110
Query: 409 QTANG---LTLAWSRNNQIGSSS 428
+ + + +N +
Sbjct: 111 HSWKNTALHKVTYLQNGKDRKYF 133
Score = 52.2 bits (125), Expect = 9e-08
Identities = 30/193 (15%), Positives = 50/193 (25%), Gaps = 35/193 (18%)
Query: 189 PIVRERPSDLRLEVGRDAVFLCGIEGSPPP-STFWMLEGNRSLIYPGDRVDNIQAEITSD 247
+V P + C SP ST W + I+S
Sbjct: 8 AVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESL---------------ISSQ 52
Query: 248 GMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPL 307
+ I + + C + SD L V ++L P
Sbjct: 53 A-SSYFIDAATVNDSGEYR-CQTNLSTLSD--PVQLEVH-----IGWLLLQAPRWVFKEE 103
Query: 308 RSEARLRCQVRGE---GSVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVK 364
LRC V + + ++ + + T +DSG Y C
Sbjct: 104 DP-IHLRCHSWKNTALHKVTYLQNGKDRKYFHH-----NSDFHIPKATLKDSGSYFCRGL 157
Query: 365 SPHGSASWSASLR 377
+ S S ++
Sbjct: 158 VGSKNVS-SETVN 169
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A*
1qa9_A
Length = 182
Score = 101 bits (253), Expect = 8e-25
Identities = 23/189 (12%), Positives = 49/189 (25%), Gaps = 26/189 (13%)
Query: 12 PKSQRVAA--GDTALLEC-GPPRGHPEPTLVWKKNGHPID----------FENSKRLRLV 58
+ G L+ + W+K F+ +L
Sbjct: 4 TNALETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLF 63
Query: 59 DGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAV-LRVLVKPYIIRGPKDTTVSASSII 117
L I+ + D Y+ + + G L++ + K
Sbjct: 64 KNGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERV-----SKPKISWTCINT 118
Query: 118 VFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKI 177
C V ++ + G + S+ + + ++ C A N V K
Sbjct: 119 TLTCEVMNGTDPELNLYQDGKHLKL-------SQRVITHKWTTSLSAKFKCTAGNKVSKE 171
Query: 178 SASATLTVQ 186
S+ ++
Sbjct: 172 SSVEPVSCP 180
Score = 75.3 bits (185), Expect = 1e-15
Identities = 18/181 (9%), Positives = 49/181 (27%), Gaps = 36/181 (19%)
Query: 121 CSVGGDAVLTVHWKRLG-------------SAMPEDRMSVLPSRSLQLSDVRLEDAGEYV 167
D + + W++ + +D + + +L++ ++ +D Y
Sbjct: 23 SFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQDIYK 82
Query: 168 CEAENAVGKISASATLTVQMAPIVRERPSDLRLEV-GRDAVFLCGIEGSPPPSTFWMLEG 226
+ GK ++ ++ER S ++ + C + P +G
Sbjct: 83 VSIYDTKGKNVLEKIFDLK----IQERVSKPKISWTCINTTLTCEVMNGTDPELNLYQDG 138
Query: 227 NRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVS 286
+ RV + + C N + + ++
Sbjct: 139 --KHLKLSQRVITHKWTTSLSAK----------------FKCTAGNKVSKESSVEPVSCP 180
Query: 287 G 287
Sbjct: 181 E 181
Score = 63.7 bits (155), Expect = 9e-12
Identities = 22/186 (11%), Positives = 51/186 (27%), Gaps = 30/186 (16%)
Query: 202 VGRDAVFLCGI--EGSPPPSTFWMLEGNRSLIYPGDRVDNIQA-----EITSDGMNLLKI 254
+G+D W ++ I + ++ +G LKI
Sbjct: 13 LGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGT--LKI 70
Query: 255 QNVSRT-AAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARL 313
+++ I + G ++ + + P I + N TL
Sbjct: 71 KHLKTDDQD--IYKVSIYDTKGKNVLEKIFDLKIQERVSKPKISWTCINTTL-------- 120
Query: 314 RCQVRGEG--SVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSAS 371
C+V + ++ + + R ++ T S ++ C + S
Sbjct: 121 TCEVMNGTDPELNLYQDGKHLKLSQR--------VITHKWTTSLSAKFKCTAGNKVSKES 172
Query: 372 WSASLR 377
+
Sbjct: 173 SVEPVS 178
Score = 59.1 bits (143), Expect = 4e-10
Identities = 9/67 (13%), Positives = 20/67 (29%), Gaps = 3/67 (4%)
Query: 323 VQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLR---FE 379
Q+ + + + +G+L + + +D Y + G E
Sbjct: 45 AQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQE 104
Query: 380 SPTNPNI 386
+ P I
Sbjct: 105 RVSKPKI 111
>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III
domain, oncofetal splice VARI extra-domain B, EIIIB,
ED-B, angiogenesis, integrin; 2.40A {Homo sapiens}
Length = 375
Score = 106 bits (266), Expect = 1e-24
Identities = 59/334 (17%), Positives = 110/334 (32%), Gaps = 68/334 (20%)
Query: 396 TYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATW 455
T + V+ T + + L W+ + SS+++GY++ + +G+
Sbjct: 94 PEVPQLTDLSFVDITDSSIGLRWTP---LNSSTIIGYRITV--------VAAGEGIPIFE 142
Query: 456 VRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGG 515
V ++V TVT L G+ Y V L + G SAP+ L+ + +
Sbjct: 143 DFVDSSVGY--YTVTGLEPGIDYDISVITLINGGESAPTTLTQQTAVPP----------- 189
Query: 516 KGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPMTSTSVKLTWEILNTDYIEGV 575
P L+ + ++++TW + +
Sbjct: 190 --------P------------TDLR-----------FTNIGPDTMRVTWAPPPSIDLTNF 218
Query: 576 YIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVR 635
+ + VA L++ + + ++T L + Y + + + P R
Sbjct: 219 LVRYSPVKNEEDVAELSI--SPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPL-----R 271
Query: 636 TLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVG-GGNNSALINMTV 694
+ P D + A S + W P I Y+I + V
Sbjct: 272 GRQKTGLDSPTGIDFSDITANSFTVHWIAP-----RATITGYRIRHHPEHFSGRPREDRV 326
Query: 695 SASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYS 728
S ++ LTNL+ G Y VS+ A N P
Sbjct: 327 PHSRNSITLTNLTPGTEYVVSIVALNGREESPLL 360
Score = 101 bits (253), Expect = 5e-23
Identities = 60/346 (17%), Positives = 106/346 (30%), Gaps = 70/346 (20%)
Query: 398 PGPPTKPTLVNQTANG-LTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWV 456
PPT L G LT++W R+ + + GY++ + +G +
Sbjct: 3 LSPPTNLHLEANPDTGVLTVSWERST---TPDITGYRITT-------TPTNGQQGNSLEE 52
Query: 457 RVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGK 516
V + S T NL+ GL Y V + S P
Sbjct: 53 VVHADQSS--CTFDNLSPGLEYNVSVYTVKDDKESVPI---------------------- 88
Query: 517 GIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPMTSTSVKLTWEILNTDYIEGVY 576
+ L +L+ +T +S+ L W LN+ I G
Sbjct: 89 -------------------SDTIIPEVPQLTDLS-FVDITDSSIGLRWTPLNSSTIIGYR 128
Query: 577 IYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVRT 636
I + V + VTGL Y+ ++ + P+ L
Sbjct: 129 ITVVAAGEGIPIFEDFV--DSSVGYYTVTGLEPGIDYDISVITLINGGESAPTTLTQQTA 186
Query: 637 LECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVG-GGNNSALINMTVS 695
L + ++ + W PPP + + + + N + +++S
Sbjct: 187 ----VPPPTDLR-FTNIGPDTMRVTWAPPP----SIDLTNFLVRYSPVKNEEDVAELSIS 237
Query: 696 ASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGPEP 741
S ++LTNL G Y VS+++ P +G +
Sbjct: 238 PSDNAVVLTNLLPGTEYVVSVSSVYEQHEST---PLRGRQKTGLDS 280
Score = 57.5 bits (139), Expect = 9e-09
Identities = 34/247 (13%), Positives = 62/247 (25%), Gaps = 59/247 (23%)
Query: 395 STYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATAT 454
T PPT N + + + W+ S L + V SP +
Sbjct: 184 QTAVPPPTDLRFTNIGPDTMRVTWA---PPPSIDLTNFLVRY--------SPVKNEEDVA 232
Query: 455 WVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEG 514
+ ++ + + + +TNL G Y V ++ S P
Sbjct: 233 ELSISPSDNA--VVLTNLLPGTEYVVSVSSVYEQHESTPL-------------------- 270
Query: 515 GKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPMTSTSVKLTWEILNTDYIEG 574
GR ++ + + +T+ S + W I G
Sbjct: 271 -----------RGRQKTGLDSPTGID-----------FSDITANSFTVHWIAPRAT-ITG 307
Query: 575 VYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLRAV 634
I V + +T L + Y +V G +
Sbjct: 308 YRIRHHPEHFSGRPREDRV--PHSRNSITLTNLTPGTEYVVSIVALNGREESPLLIG-QQ 364
Query: 635 RTLECEP 641
T+
Sbjct: 365 STVSAHH 371
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 97.8 bits (244), Expect = 1e-24
Identities = 31/98 (31%), Positives = 42/98 (42%), Gaps = 1/98 (1%)
Query: 90 TDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLP 149
+ + V P KD V V +CSV G V + W G + R +
Sbjct: 2 SSGSSGMEVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEA 61
Query: 150 SR-SLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQ 186
L + D ED G Y C AENA+G++S SA +TV
Sbjct: 62 GVAELHIQDALPEDHGTYTCLAENALGQVSCSAWVTVH 99
Score = 80.1 bits (198), Expect = 3e-18
Identities = 27/90 (30%), Positives = 38/90 (42%), Gaps = 4/90 (4%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQ 66
F K V G +L+C RG P P + W NG PI + ++ L IQ
Sbjct: 13 SFSSVLKDCAVIEGQDFVLQC-SVRGTPVPRITWLLNGQPI--QYARSTCEAGVAELHIQ 69
Query: 67 DSRKTDDGRYQCVVKNVAGTRESTDAVLRV 96
D+ D G Y C+ +N G + A + V
Sbjct: 70 DALPEDHGTYTCLAENALGQVSCS-AWVTV 98
Score = 79.7 bits (197), Expect = 3e-18
Identities = 21/101 (20%), Positives = 35/101 (34%), Gaps = 7/101 (6%)
Query: 279 ARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG--EGSVQWWRGEREVGSGP 336
+ S + P + + + L+C VRG + W + +
Sbjct: 2 SSGSSGM-----EVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYAR 56
Query: 337 RVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLR 377
G L + D ED G YTC+ ++ G S SA +
Sbjct: 57 STCEAGVAELHIQDALPEDHGTYTCLAENALGQVSCSAWVT 97
Score = 64.7 bits (158), Expect = 6e-13
Identities = 28/113 (24%), Positives = 41/113 (36%), Gaps = 22/113 (19%)
Query: 179 ASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVD 238
+S + +++AP D + G+D V C + G+P P W+L G I
Sbjct: 2 SSGSSGMEVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQ--PIQYARS-- 57
Query: 239 NIQAEITSDGMNLLKIQNVSR------TAAPLIILCLGVNAAGSDLARASLTV 285
G+ L IQ+ T CL NA G A +TV
Sbjct: 58 -----TCEAGVAELHIQDALPEDHGTYT-------CLAENALGQVSCSAWVTV 98
>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein;
2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1
b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A
Length = 368
Score = 105 bits (263), Expect = 2e-24
Identities = 58/338 (17%), Positives = 100/338 (29%), Gaps = 69/338 (20%)
Query: 396 TYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATW 455
PPT N + + + W+ S L + V SP +
Sbjct: 93 PAVPPPTDLRFTNIGPDTMRVTWAP---PPSIDLTNFLVRY--------SPVKNEEDVAE 141
Query: 456 VRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGG 515
+ ++ + + + +TNL G Y V ++ S P + L
Sbjct: 142 LSISPSDNA--VVLTNLLPGTEYVVSVSSVYEQHESTPLRGRQKTGLD------------ 187
Query: 516 KGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPMTSTSVKLTWEILNTDYIEGV 575
+ + +T+ S + W I G
Sbjct: 188 -------------------SPTGID-----------FSDITANSFTVHWIAPRAT-ITGY 216
Query: 576 YIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVR 635
I V + +T L + Y +V G +
Sbjct: 217 RIRHHPEHFSGRPREDRV--PHSRNSITLTNLTPGTEYVVSIVALNGREESPLLI----- 269
Query: 636 TLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVG-GGNNSALINMTV 694
+ S VP+ + V TS+L+ W P +R Y+I G G NS + TV
Sbjct: 270 GQQSTVSDVPRDLEVVAATPTSLLISWDAP-----AVTVRYYRITYGETGGNSPVQEFTV 324
Query: 695 SASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPAL 732
S T ++ L G+ Y++++ A G P S +
Sbjct: 325 PGSKSTATISGLKPGVDYTITVYAVTGRGDSPASSKPI 362
Score = 94.1 bits (234), Expect = 1e-20
Identities = 54/333 (16%), Positives = 95/333 (28%), Gaps = 68/333 (20%)
Query: 398 PGPPTKPTLVNQTANG-LTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWV 456
PPT L G LT++W R+ + + GY++ + +
Sbjct: 2 LSPPTNLHLEANPDTGVLTVSWERST---TPDITGYRITTTPT---------NGQQGNSL 49
Query: 457 RVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGK 516
+ T NL+ GL Y V + S
Sbjct: 50 EEVVHADQSSCTFDNLSPGLEYNVSVYTVKDDKESV------------------------ 85
Query: 517 GIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPMTSTSVKLTWEILNTDYIEGVY 576
P L+ + ++++TW + +
Sbjct: 86 -------PISDTIIPAVPPPTDLR-----------FTNIGPDTMRVTWAPPPSIDLTNFL 127
Query: 577 IYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVRT 636
+ + VA L++ + + ++T L + Y + + + P R
Sbjct: 128 VRYSPVKNEEDVAELSI--SPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPL-----RG 180
Query: 637 LECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINM-TVS 695
+ P D + A S + W P I Y+I + S V
Sbjct: 181 RQKTGLDSPTGIDFSDITANSFTVHWIAP-----RATITGYRIRHHPEHFSGRPREDRVP 235
Query: 696 ASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYS 728
S ++ LTNL+ G Y VS+ A N P
Sbjct: 236 HSRNSITLTNLTPGTEYVVSIVALNGREESPLL 268
Score = 74.5 bits (183), Expect = 3e-14
Identities = 31/175 (17%), Positives = 68/175 (38%), Gaps = 11/175 (6%)
Query: 556 TSTSVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEF 615
+ + ++WE T I G I + + ++ V+HA ++S L+ Y
Sbjct: 15 DTGVLTVSWERSTTPDITGYRITTTPTNGQQGNSLEEVVHADQSS-CTFDNLSPGLEYNV 73
Query: 616 FLVPFFGSVDGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIR 675
+ + P + + P+ + + T+ + ++ + W PPP + +
Sbjct: 74 SVYTVKDDKESVPISDT-IIPAVPPPTDL-RFTN---IGPDTMRVTWAPPP----SIDLT 124
Query: 676 TYQI-IVGGGNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSR 729
+ + N + +++S S ++LTNL G Y VS+++ R
Sbjct: 125 NFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLR 179
Score = 54.8 bits (132), Expect = 6e-08
Identities = 20/102 (19%), Positives = 36/102 (35%), Gaps = 14/102 (13%)
Query: 394 PSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATA 453
ST P +V T L ++W + ++ Y++ +G +
Sbjct: 272 QSTVSDVPRDLEVVAATPTSLLISWDA----PAVTVRYYRITY--------GETGGNSPV 319
Query: 454 TWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSP 495
V + + T++ L G+ YT V A+ G S S
Sbjct: 320 QEFTVPGSKST--ATISGLKPGVDYTITVYAVTGRGDSPASS 359
>2ed9_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 124
Score = 97.8 bits (244), Expect = 3e-24
Identities = 34/106 (32%), Positives = 47/106 (44%), Gaps = 1/106 (0%)
Query: 625 DGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGG 684
G ++ V TL PS PQ ++N+ S+ + W PPP GT NG I Y+I
Sbjct: 12 PGVSTDDITVVTLSDVPSAPPQNVSLEVVNSRSIKVSWLPPPSGTQNGFITGYKIRH-RK 70
Query: 685 NNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRP 730
T+ + L T L G +YS ++A GTGP S
Sbjct: 71 TTRRGEMETLEPNNLWYLFTGLEKGSQYSFQVSAMTVNGTGPPSNW 116
Score = 36.1 bits (84), Expect = 0.012
Identities = 20/100 (20%), Positives = 34/100 (34%), Gaps = 17/100 (17%)
Query: 399 GPPTKPTLVNQTANGLTLAWS---RNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATW 455
PP +L + + ++W Q G + GY++ + + T
Sbjct: 30 APPQNVSLEVVNSRSIKVSWLPPPSGTQNGF--ITGYKIR-HRK---------TTRRGEM 77
Query: 456 VRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSP 495
+ N T L G Y+F V A+ +G PS
Sbjct: 78 ETLEPNNLW--YLFTGLEKGSQYSFQVSAMTVNGTGPPSN 115
Score = 35.8 bits (83), Expect = 0.017
Identities = 21/92 (22%), Positives = 33/92 (35%), Gaps = 8/92 (8%)
Query: 551 EVKPMTSTSVKLTWEILNTDYIEGV----YIYSRGLDPPASVAMLTVLHAGEASGFLVTG 606
++ + S S+K++W + G I R + L +L TG
Sbjct: 36 SLEVVNSRSIKVSWLPPPSGTQNGFITGYKIRHRKTTRRGEMETLE----PNNLWYLFTG 91
Query: 607 LAHYSRYEFFLVPFFGSVDGKPSNLRAVRTLE 638
L S+Y F + + G PSN T E
Sbjct: 92 LEKGSQYSFQVSAMTVNGTGPPSNWYTAETPE 123
>2edx_A Protein tyrosine phosphatase, receptor type, F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 134
Score = 97.8 bits (244), Expect = 4e-24
Identities = 32/109 (29%), Positives = 44/109 (40%), Gaps = 3/109 (2%)
Query: 625 DGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQII---V 681
S RT + PS PQ V + +T+V + W PPP + NGVI Y + V
Sbjct: 2 SSGSSGTIEARTAQSTPSAPPQKVMCVSMGSTTVRVSWVPPPADSRNGVITQYSVAYEAV 61
Query: 682 GGGNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRP 730
G + + +S + L L Y V + A G GP S P
Sbjct: 62 DGEDRGRHVVDGISREHSSWDLVGLEKWTEYRVWVRAHTDVGPGPESSP 110
Score = 41.2 bits (97), Expect = 2e-04
Identities = 26/111 (23%), Positives = 43/111 (38%), Gaps = 7/111 (6%)
Query: 551 EVKPMTSTSVKLTWEILNTDYIEGV----YIYSRGLDPPASVAMLTVLHAGEASGFLVTG 606
M ST+V+++W D GV + +D + + E S + + G
Sbjct: 26 MCVSMGSTTVRVSWVPPPADSRNGVITQYSVAYEAVDGEDRGRHVVDGISREHSSWDLVG 85
Query: 607 LAHYSRYEFFLVPFFGSVDGKPSNLRAVRTLECEPSGVPQLTDPVLLNATS 657
L ++ Y ++ G S+ VRT E PSG P+ V +S
Sbjct: 86 LEKWTEYRVWVRAHTDVGPGPESSPVLVRTDEDVPSGPPR---KVESGPSS 133
Score = 38.5 bits (90), Expect = 0.002
Identities = 19/108 (17%), Positives = 33/108 (30%), Gaps = 16/108 (14%)
Query: 399 GPPTKPTLVNQTANGLTLAWS---RNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATW 455
PP K V+ + + ++W +++ G + Y V
Sbjct: 20 APPQKVMCVSMGSTTVRVSWVPPPADSRNGV--ITQYSVAYE--------AVDGEDRGRH 69
Query: 456 VRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLR 503
V + + L Y VRA G P P S +++R
Sbjct: 70 VVDGISREHSSWDLVGLEKWTEYRVWVRAHTDVG---PGPESSPVLVR 114
>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins,
protein-protein interactions, C-type lectin domain;
2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1
Length = 283
Score = 102 bits (255), Expect = 5e-24
Identities = 55/333 (16%), Positives = 96/333 (28%), Gaps = 68/333 (20%)
Query: 396 TYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATW 455
PT+ + + + + W+ LL Y G T
Sbjct: 13 PVIDGPTQILVRDVSDTVAFVEWTPPRAKVDFILLKYG------------LVGGEGGKTT 60
Query: 456 VRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGG 515
R+ + +V L G Y + A+ S S +
Sbjct: 61 FRLQPPLSQ--YSVQALRPGSRYEVSISAVRGTNESDASSTQFTTEI------------- 105
Query: 516 KGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPMTSTSVKLTWEILNTDYIEGV 575
A ++L+ V T+TS+ L W+ + +
Sbjct: 106 ------------------DAPKNLR-----------VGSRTATSLDLEWDNSEAE-AQEY 135
Query: 576 YIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVR 635
+ L +L G + +T L + Y + S P+ + A R
Sbjct: 136 KVVYSTLAGEQYHEVLVPKGIGPTTKTTLTDLVPGTEYGVGISAVMNSKQSIPATMNA-R 194
Query: 636 TLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVS 695
T P + +T + TS+ L W +G I Y+I + + +TV
Sbjct: 195 TELDSPRDL-MVTA---SSETSISLIWTKA-----SGPIDHYRITFTPSSGIS-SEVTVP 244
Query: 696 ASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYS 728
+ LT+L G Y +S+ A S
Sbjct: 245 RDRTSYTLTDLEPGAEYIISITAERGRQQSLES 277
Score = 56.7 bits (137), Expect = 9e-09
Identities = 38/243 (15%), Positives = 73/243 (30%), Gaps = 59/243 (24%)
Query: 392 PEPSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTA 451
+ +T P + ++TA L L W + + Y+V YS + +G+
Sbjct: 99 TQFTTEIDAPKNLRVGSRTATSLDLEWDNSE----AEAQEYKVV-YS------TLAGEQY 147
Query: 452 TATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIF 511
V P+ T+T+L G Y + A+ + S P+ ++
Sbjct: 148 HEVLVPKGIG-PTTKTTLTDLVPGTEYGVGISAVMNSKQSIPATMNARTE---------- 196
Query: 512 SEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPMTSTSVKLTWEILNTDY 571
D + + L V + TS+ L W +
Sbjct: 197 ------------LD---------SPRDLM-----------VTASSETSISLIWTKASGP- 223
Query: 572 IEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNL 631
I+ I +S + + + + +T L + Y + G S +
Sbjct: 224 IDHYRITFTPSSGISSEVTVP----RDRTSYTLTDLEPGAEYIISITAERGRQQSLESTV 279
Query: 632 RAV 634
A
Sbjct: 280 DAF 282
Score = 52.1 bits (125), Expect = 3e-07
Identities = 20/115 (17%), Positives = 38/115 (33%), Gaps = 6/115 (5%)
Query: 626 GKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGN 685
G P + G Q+ ++ T ++W PP + ++ Y ++ G G
Sbjct: 1 GSPGISGGGGGIP-VIDGPTQIL-VRDVSDTVAFVEWTPPR-AKVDFILLKYGLVGGEGG 57
Query: 686 NSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGPE 740
+ + + L G RY VS++A S + P+
Sbjct: 58 KT---TFRLQPPLSQYSVQALRPGSRYEVSISAVRGTNESDASSTQFTTEIDAPK 109
>1x5h_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 132
Score = 97.4 bits (243), Expect = 5e-24
Identities = 34/107 (31%), Positives = 48/107 (44%), Gaps = 1/107 (0%)
Query: 625 DGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIV-GG 683
S AVRTL PS PQ + N+ S+++ W+PP T NG I Y+I
Sbjct: 2 SSGSSGDVAVRTLSDVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRKA 61
Query: 684 GNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRP 730
S + VS + + L+ L G Y+ +AA GTGP +
Sbjct: 62 SRKSDVTETLVSGTQLSQLIEGLDRGTEYNFRVAALTINGTGPATDW 108
Score = 38.1 bits (89), Expect = 0.002
Identities = 18/100 (18%), Positives = 32/100 (32%), Gaps = 15/100 (15%)
Query: 399 GPPTKPTLVNQTANGLTLAWS---RNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATW 455
P +L + + + + W Q G + GY++ + + T
Sbjct: 20 AAPQNLSLEVRNSKSIMIHWQPPAPATQNGQ--ITGYKIRYR--------KASRKSDVTE 69
Query: 456 VRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSP 495
V+ S + L G Y F V AL +G +
Sbjct: 70 TLVSGTQLS--QLIEGLDRGTEYNFRVAALTINGTGPATD 107
Score = 38.1 bits (89), Expect = 0.002
Identities = 17/99 (17%), Positives = 32/99 (32%), Gaps = 6/99 (6%)
Query: 551 EVKPMTSTSVKLTWEILNTDYIEGV----YIYSRGLDPPASVAMLTVLHAGEASGFLVTG 606
++ S S+ + W+ G I R + V V +G L+ G
Sbjct: 26 SLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRKASRKSDVTETLV--SGTQLSQLIEG 83
Query: 607 LAHYSRYEFFLVPFFGSVDGKPSNLRAVRTLECEPSGVP 645
L + Y F + + G ++ + T E +
Sbjct: 84 LDRGTEYNFRVAALTINGTGPATDWLSAETFESDLDETR 122
>3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma,
epidermolysis bullosa, alternative splicing, disease
mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo
sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A
Length = 234
Score = 99.9 bits (249), Expect = 1e-23
Identities = 43/197 (21%), Positives = 68/197 (34%), Gaps = 13/197 (6%)
Query: 551 EVKPMTSTSVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHY 610
K S + W + G + S A L + +T L Y
Sbjct: 13 NAKAAGSRKIHFNWLPPSGK-PMGYRVKYWIQGDSESEAHLLD---SKVPSVELTNLYPY 68
Query: 611 SRYEFFLVPFFGSVDGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTH 670
YE + + +G S+L + RT + PS +L ++++T L W P
Sbjct: 69 CDYEMKVCAYGAQGEGPYSSLVSCRTHQEVPSEPGRLA-FNVVSSTVTQLSWAEPA--ET 125
Query: 671 NGVIRTYQIIVGGGNNSALIN------MTVSASTPTLLLTNLSAGIRYSVSLAATNRAGT 724
NG I Y++ G N+ + + LL+ NL Y ++ A N AG
Sbjct: 126 NGEITAYEVCYGLVNDDNRPIGPMKKVLVDNPKNRMLLIENLRESQPYRYTVKARNGAGW 185
Query: 725 GPYSRPALLSLTSGPEP 741
GP + T P
Sbjct: 186 GPEREAIINLATQPKRP 202
Score = 62.9 bits (153), Expect = 5e-11
Identities = 21/93 (22%), Positives = 34/93 (36%), Gaps = 5/93 (5%)
Query: 638 ECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSAS 697
G PQ + + + W PP +G Y++ +S + +
Sbjct: 2 SHMDLGAPQNPNAKAAGSRKIHFNWLPP-----SGKPMGYRVKYWIQGDSESEAHLLDSK 56
Query: 698 TPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRP 730
P++ LTNL Y + + A G GPYS
Sbjct: 57 VPSVELTNLYPYCDYEMKVCAYGAQGEGPYSSL 89
Score = 60.6 bits (147), Expect = 3e-10
Identities = 42/281 (14%), Positives = 78/281 (27%), Gaps = 64/281 (22%)
Query: 398 PGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVR 457
G P P + + W + +GY+V+ + GD+
Sbjct: 6 LGAPQNPNAKAAGSRKIHFNWLPPSGK----PMGYRVKYW--------IQGDS---ESEA 50
Query: 458 VATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKG 517
+ P + +TNL Y V A + G P S + R T
Sbjct: 51 HLLDSKVPSVELTNLYPYCDYEMKVCAYGAQG---EGPYSSLVSCR-TH----------- 95
Query: 518 IFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPMTSTSVKLTWEILNTDY--IEG- 574
+ P E + ++ST +L+W I
Sbjct: 96 ---QEVPSEPGRLA--------------------FNVVSSTVTQLSWAEPAETNGEITAY 132
Query: 575 --VYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSN-L 631
Y + P ++ + L+ L Y + + G+ G +
Sbjct: 133 EVCYGLVNDDNRPIGPMKKVLVDNPKNRMLLIENLRESQPYRYTVKARNGAGWGPEREAI 192
Query: 632 RAVRTLECEPSGVPQLTDPVLLNATS-----VLLKWKPPPV 667
+ T P +P + D +++A S L + +
Sbjct: 193 INLATQPKRPMSIPIIPDIPIVDAQSGEDYDSFLMYSDDVL 233
>1bpv_A Titin, A71, connectin; fibronectin type III; NMR {Homo sapiens}
SCOP: b.1.2.1
Length = 112
Score = 95.9 bits (239), Expect = 1e-23
Identities = 33/118 (27%), Positives = 47/118 (39%), Gaps = 13/118 (11%)
Query: 388 FFRAPEPSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPS 447
S+ PP KP +N T + +TL W++ G + Y VE
Sbjct: 1 MHHHHHHSSPIDPPGKPVPLNITRHTVTLKWAKPEYTGGFKITSYIVEKRD--------- 51
Query: 448 GDTATATWVRV-ATNVPSPILTVTNLTVGLTYTFLVRALNSHG-LSAPSPLSDEIVLR 503
W++ +N+ TV+ LT Y F V A N+ G +S PS SD I R
Sbjct: 52 --LPNGRWLKANFSNILENEFTVSGLTEDAAYEFRVIAKNAAGAISPPSEPSDAITCR 107
Score = 39.2 bits (92), Expect = 6e-04
Identities = 25/96 (26%), Positives = 33/96 (34%), Gaps = 9/96 (9%)
Query: 640 EPSGVPQLTDPVLLNAT--SVLLKWKPPPVGTHNGVIRTYQIIV--GGGNNSALINMTVS 695
P P PV LN T +V LKW P T I +Y + N +
Sbjct: 9 SPIDPP--GKPVPLNITRHTVTLKWAKPE-YTGGFKITSYIVEKRDLPNGRWLKANFSNI 65
Query: 696 ASTPTLLLTNLSAGIRYSVSLAATNRAGT-GPYSRP 730
++ L+ Y + A N AG P S P
Sbjct: 66 LEN-EFTVSGLTEDAAYEFRVIAKNAAGAISPPSEP 100
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain,
cell adhesion, cell junction, glycoprotein,
immunoglobulin domain, membrane; HET: NAG FUC; 2.19A
{Mus musculus} PDB: 3mj7_A* 3mj9_A*
Length = 268
Score = 100 bits (249), Expect = 2e-23
Identities = 41/237 (17%), Positives = 66/237 (27%), Gaps = 60/237 (25%)
Query: 8 FRVQPKSQRVAAGDTALLEC--GPPRGHPEPTLVWKKNGHPIDFEN-------------- 51
V RV G++ L+ C + W + D
Sbjct: 8 LTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTG 67
Query: 52 --SKRLRLV------DGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYII 103
R LV DG+ L +QD +K D+G Y C ++ + + + V P
Sbjct: 68 RFQNRSHLVGDTFHNDGS-LLLQDVQKADEGIYTCEIRLKNESM-VMKKPVELWVLPEE- 124
Query: 104 RGPKDTTVSASSIIVFECSVGGD---AVLTVHWKRLGSAMPEDRMSVLPSR--------- 151
P+D V CS+ V V+W + E+ +
Sbjct: 125 --PRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQS 182
Query: 152 -------------------SLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAP 189
S++L V+ D G Y C + + L V
Sbjct: 183 LGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQDE 239
Score = 81.1 bits (199), Expect = 6e-17
Identities = 38/257 (14%), Positives = 58/257 (22%), Gaps = 54/257 (21%)
Query: 95 RVLVKPYIIRGPKDTTVSASSIIVFECSV---GGDAVLTVHWKRLGSAMPEDRMSVLPSR 151
R P + V ++ C V V V W +
Sbjct: 1 RSQGLPGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYS 60
Query: 152 ------------------------SLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQM 187
SL L DV+ D G Y CE + + +
Sbjct: 61 NLSVPTGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELW- 119
Query: 188 APIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTF---WMLEGNRS------LIYPGDRVD 238
++ E P DLR+ VG C I+ + WM L Y +
Sbjct: 120 --VLPEEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRS 177
Query: 239 NIQAEITSDGMNLLKIQNVSRTAAPLIIL-----------CLGVNAAGSDLARASLTVSG 287
+ + ++SR + + C L V
Sbjct: 178 GKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQ 237
Query: 288 PDPNPPPVILFGPANQT 304
P T
Sbjct: 238 ----DEFQRTISPTPPT 250
Score = 74.5 bits (182), Expect = 1e-14
Identities = 44/279 (15%), Positives = 77/279 (27%), Gaps = 76/279 (27%)
Query: 185 VQMAPIVRERPSDLRLEVGRDAVFLCGI---EGSPPPSTFWMLEG-------------NR 228
Q P + LR+ VG + C + E W+ +
Sbjct: 2 SQGLPGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSN 61
Query: 229 SLIYPG---DRVDNIQAEITSDGMNLLKIQNVSRT-AAPLIILCLGVNAAGSDLARASLT 284
+ G +R + +DG L +Q+V + C S + + +
Sbjct: 62 LSVPTGRFQNRSHLVGDTFHNDGS--LLLQDVQKADEGIYT--CEIRLKNESMVMKKPVE 117
Query: 285 VSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRGE-----GSVQWWRGEREVGSGP--- 336
+ V+ P + + + ++RC ++ V W
Sbjct: 118 LW--------VLPEEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVL 169
Query: 337 -------------------RVNVTG-----DGSLVLTDVTKEDSGEYTCVVKSPHGSASW 372
RV++TG DGS+ L V + D G YTC + +
Sbjct: 170 SYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRK 229
Query: 373 SASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTA 411
+ L + PT PT Q
Sbjct: 230 TIVLH------------VVQDEFQRTISPTPPTDKGQQG 256
Score = 57.2 bits (137), Expect = 7e-09
Identities = 32/228 (14%), Positives = 58/228 (25%), Gaps = 48/228 (21%)
Query: 293 PPVILFGPANQTLPLRSEARLRCQVR-----GEGSVQWWRGEREVGSGPRV--------- 338
P + + + + C V+ V W + + + V
Sbjct: 5 LPGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSV 64
Query: 339 --------------NVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLR-FESPTN 383
DGSL+L DV K D G YTC ++ + S + + P
Sbjct: 65 PTGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLPEE 124
Query: 384 PNIGFFRAPEPSTYP-----GPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYS 438
P R + + + T VN W ++ + +
Sbjct: 125 PRDLRVRVGDTTQMRCSIQSTEEKRVTKVN---------WMFSSGSHTEEETVLSYDSNM 175
Query: 439 RPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTV---GLTYTFLVR 483
R S + + + + G YT +
Sbjct: 176 RSGKFQSLGRFRNRVDLTG-DISRNDGSIKLQTVKESDQG-IYTCSIY 221
Score = 49.9 bits (118), Expect = 2e-06
Identities = 26/150 (17%), Positives = 44/150 (29%), Gaps = 34/150 (22%)
Query: 11 QPKSQRVAAGDTALLEC------------------GPPRGHPEPTLVWKKNGHPIDFENS 52
+P+ RV GDT + C E L + N F++
Sbjct: 124 EPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSL 183
Query: 53 KRLRLV----------DGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYI 102
R R DG+ + +Q +++D G Y C + T VL V+ +
Sbjct: 184 GRFRNRVDLTGDISRNDGS-IKLQTVKESDQGIYTCSIYVGKLESRKT-IVLHVVQDEFQ 241
Query: 103 IRGPKDTTVSASSIIVFECSVGGDAVLTVH 132
+ + G+ H
Sbjct: 242 RTISPTPPTDKGQ----QGILNGNQHHHHH 267
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2,
angiogenesis, ATP-binding, developmental protein,
differentiation, glycoprotein; 2.70A {Homo sapiens}
Length = 108
Score = 95.1 bits (237), Expect = 2e-23
Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 2/98 (2%)
Query: 94 LRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPS--R 151
+ V P I ++ T S I C+ G+ + W + + ED VL R
Sbjct: 5 VLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNR 64
Query: 152 SLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAP 189
+L + VR ED G Y C+A + +G A ++ A
Sbjct: 65 NLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQ 102
Score = 88.2 bits (219), Expect = 5e-21
Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 5/95 (5%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG-TNLAI 65
++Q + G++ + C G+P P ++W K+ + + L DG NL I
Sbjct: 12 TITGNLENQTTSIGESIEVSC-TASGNPPPQIMWFKDNETL--VEDSGIVLKDGNRNLTI 68
Query: 66 QDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKP 100
+ RK D+G Y C +V G +A +
Sbjct: 69 RRVRKEDEGLYTCQACSVLGC-AKVEAFFIIEGAQ 102
Score = 84.3 bits (209), Expect = 9e-20
Identities = 26/108 (24%), Positives = 39/108 (36%), Gaps = 7/108 (6%)
Query: 283 LTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG--EGSVQWWRGEREVGSGPRVNV 340
LTV P I NQT + + C G + W++ + + +
Sbjct: 3 LTVL---ERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVL 59
Query: 341 T-GDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLR-FESPTNPNI 386
G+ +L + V KED G YTC S G A A + N+
Sbjct: 60 KDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEKTNL 107
Score = 67.7 bits (166), Expect = 6e-14
Identities = 19/112 (16%), Positives = 35/112 (31%), Gaps = 11/112 (9%)
Query: 182 TLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQ 241
T+ ++AP + + +G C G+PPP W + + +
Sbjct: 4 TVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNE--TLVEDSGI---- 57
Query: 242 AEITSDGMNLLKIQNVSRT-AAPLIILCLGVNAAGSDLARASLTVSGPDPNP 292
+ DG L I+ V + + C + G A + G
Sbjct: 58 --VLKDGNRNLTIRRVRKEDEG--LYTCQACSVLGCAKVEAFFIIEGAQEKT 105
>1va9_A DOWN syndrome cell adhesion molecule like- protein 1B; FNIII
domain, dscaml1 protein, structural genomics; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 122
Score = 95.5 bits (238), Expect = 2e-23
Identities = 34/108 (31%), Positives = 46/108 (42%), Gaps = 5/108 (4%)
Query: 628 PSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIV-----G 682
S + T E P G P + + S+ + WK P NGVIR YQI G
Sbjct: 2 SSGSSGISTEEAAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPG 61
Query: 683 GGNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRP 730
+++ M + + L NL +Y V + A NRAGTGP S
Sbjct: 62 SNGQYSIVEMKATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSSE 109
Score = 44.3 bits (105), Expect = 1e-05
Identities = 28/108 (25%), Positives = 41/108 (37%), Gaps = 14/108 (12%)
Query: 399 GPPTKPTLVNQTANGLTLAWS---RNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATW 455
GPP TL T+ + + W + Q G + GYQ+ Y + G +
Sbjct: 17 GPPMDVTLQPVTSQSIQVTWKAPKKELQNGV--IRGYQI-GYRE-----NSPGSNGQYSI 68
Query: 456 VRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLR 503
V + S + T+ NL Y +V+A N G P S EI
Sbjct: 69 VEMKATGDSEVYTLDNLKKFAQYGVVVQAFNRAG---TGPSSSEINAT 113
Score = 41.2 bits (97), Expect = 2e-04
Identities = 18/98 (18%), Positives = 41/98 (41%), Gaps = 6/98 (6%)
Query: 551 EVKPMTSTSVKLTWEILNTDYIEG------VYIYSRGLDPPASVAMLTVLHAGEASGFLV 604
++P+TS S+++TW+ + G + +++ + G++ + +
Sbjct: 23 TLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQYSIVEMKATGDSEVYTL 82
Query: 605 TGLAHYSRYEFFLVPFFGSVDGKPSNLRAVRTLECEPS 642
L +++Y + F + G S+ TLE PS
Sbjct: 83 DNLKKFAQYGVVVQAFNRAGTGPSSSEINATTLESGPS 120
>2yuw_A Myosin binding protein C, SLOW type; fibronectin III domain, SLOW-
type protein, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 110
Score = 93.6 bits (233), Expect = 7e-23
Identities = 27/114 (23%), Positives = 46/114 (40%), Gaps = 12/114 (10%)
Query: 391 APEPSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDT 450
S+ PPT T+ + T +T+ W + IG++ L GY +E
Sbjct: 1 GSSGSSGTSPPTLLTVDSVTDTTVTMRWRPPDHIGAAGLDGYVLEYCF-----------E 49
Query: 451 ATATWVRVATN-VPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLR 503
T W+ + + T+T L V+A+N+ G S P S I+++
Sbjct: 50 GTEDWIVANKDLIDKTKFTITGLPTDAKIFVRVKAVNAAGASEPKYYSQPILVK 103
Score = 40.8 bits (96), Expect = 2e-04
Identities = 17/93 (18%), Positives = 32/93 (34%), Gaps = 7/93 (7%)
Query: 640 EPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQI--IVGGGNNSALINMTVSAS 697
P + + + T+V ++W+PP + Y + G + + N +
Sbjct: 9 SPPTLLTVDS---VTDTTVTMRWRPPD-HIGAAGLDGYVLEYCFEGTEDWIVANKDLIDK 64
Query: 698 TPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRP 730
T +T L + V + A N AG
Sbjct: 65 T-KFTITGLPTDAKIFVRVKAVNAAGASEPKYY 96
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 92.8 bits (231), Expect = 8e-23
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 99 KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED--RMSVLPSRSLQLS 156
P I++GP + T++ + +C GD + + W + G P R ++ +LQ+
Sbjct: 8 PPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQIK 67
Query: 157 DVRLEDAGEYVCEAENAVGKISASATLTVQ 186
++R+ D G Y C A ++ G+ S SA L V
Sbjct: 68 NLRISDTGTYTCVATSSSGETSWSAVLDVT 97
Score = 90.9 bits (226), Expect = 4e-22
Identities = 34/93 (36%), Positives = 47/93 (50%), Gaps = 3/93 (3%)
Query: 288 PDPNPPPVILFGPANQTLPLRSEARLRCQVRG--EGSVQWWRGEREV-GSGPRVNVTGDG 344
+ PP+IL GPANQTL + A L+C+ G + W + G PR + G
Sbjct: 3 SGSSGPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQG 62
Query: 345 SLVLTDVTKEDSGEYTCVVKSPHGSASWSASLR 377
+L + ++ D+G YTCV S G SWSA L
Sbjct: 63 TLQIKNLRISDTGTYTCVATSSSGETSWSAVLD 95
Score = 84.0 bits (208), Expect = 1e-19
Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 3/91 (3%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQ 66
P +Q +A TALL+C G P P + W K G + + GT L I+
Sbjct: 10 IILQGPANQTLAVDGTALLKC-KATGDPLPVISWLKEGFTFPGRDPRATIQEQGT-LQIK 67
Query: 67 DSRKTDDGRYQCVVKNVAGTRESTDAVLRVL 97
+ R +D G Y CV + +G + AVL V
Sbjct: 68 NLRISDTGTYTCVATSSSGETSWS-AVLDVT 97
Score = 57.4 bits (139), Expect = 3e-10
Identities = 25/106 (23%), Positives = 40/106 (37%), Gaps = 21/106 (19%)
Query: 188 APIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSD 247
PI+ + P++ L V A+ C G P P W+ EG + R I
Sbjct: 8 PPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEG-FTFPGRDPRA-----TIQEQ 61
Query: 248 GMNLLKIQNVSR------TAAPLIILCLGVNAAGSDLARASLTVSG 287
G L+I+N+ T C+ +++G A L V+
Sbjct: 62 GT--LQIKNLRISDTGTYT-------CVATSSSGETSWSAVLDVTE 98
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain,
immunoglobulin fold, alternative splicing, signal,
muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB:
1ncu_A 1tnm_A 1tnn_A
Length = 106
Score = 92.8 bits (231), Expect = 1e-22
Identities = 27/98 (27%), Positives = 40/98 (40%), Gaps = 4/98 (4%)
Query: 93 VLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDR----MSVL 148
+ + I+ P+ TV F C G+ V TV W R G + +
Sbjct: 8 SSKTTLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTK 67
Query: 149 PSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQ 186
+ ++S V+ D G Y EN+ GK A TLT+Q
Sbjct: 68 YKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLTIQ 105
Score = 83.6 bits (207), Expect = 2e-19
Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 5/89 (5%)
Query: 293 PPVILFGPANQTLPLRSEARLRCQVRG--EGSVQWWRGEREVGSGPRVNVT---GDGSLV 347
IL P + T+ AR C G +V W R + + + R VT +
Sbjct: 14 AARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFE 73
Query: 348 LTDVTKEDSGEYTCVVKSPHGSASWSASL 376
++ V D G Y+ VV++ G +L
Sbjct: 74 ISSVQASDEGNYSVVVENSEGKQEAEFTL 102
Score = 82.8 bits (205), Expect = 4e-19
Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 7/93 (7%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV---DGTNL 63
+P+S V G++A C G P PT+ W + G + S R ++ +
Sbjct: 16 RILTKPRSMTVYEGESARFSC-DTDGEPVPTVTWLRKGQVL--STSARHQVTTTKYKSTF 72
Query: 64 AIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRV 96
I + +D+G Y VV+N G +E+ L +
Sbjct: 73 EISSVQASDEGNYSVVVENSEGKQEAE-FTLTI 104
Score = 61.2 bits (149), Expect = 1e-11
Identities = 19/110 (17%), Positives = 39/110 (35%), Gaps = 19/110 (17%)
Query: 182 TLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQ 241
+ +A + +P + + G A F C +G P P+ W+ +G + R
Sbjct: 8 SSKTTLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQV--LSTSARHQVTT 65
Query: 242 AEITSDGMNLLKIQNVSR------TAAPLIILCLGVNAAGSDLARASLTV 285
+ + +I +V + + N+ G A +LT+
Sbjct: 66 ----TKYKSTFEISSVQASDEGNYS-------VVVENSEGKQEAEFTLTI 104
>2dbj_A Proto-oncogene tyrosine-protein kinase MER precursor; C-MER,
receptor tyrosine kinase mertk, FN3 domain, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 124
Score = 93.3 bits (232), Expect = 1e-22
Identities = 26/119 (21%), Positives = 46/119 (38%), Gaps = 3/119 (2%)
Query: 626 GKPSNLRAVRTLECEPSGVPQ-LTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQII--VG 682
S T E PS P +T + ++ +V ++W PP +G + Y+I
Sbjct: 3 SGSSGWILASTTEGAPSVAPLNVTVFLNESSDNVDIRWMKPPTKQQDGELVGYRISHVWQ 62
Query: 683 GGNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGPEP 741
S + V + ++ +V +AA R G GP+S P + + + P
Sbjct: 63 SAGISKELLEEVGQNGSRARISVQVHNATCTVRIAAVTRGGVGPFSDPVKIFIPAHSGP 121
Score = 36.7 bits (85), Expect = 0.007
Identities = 17/109 (15%), Positives = 36/109 (33%), Gaps = 18/109 (16%)
Query: 399 GPPTKPTL-VNQTANGLTLAWS---RNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATAT 454
P T+ +N++++ + + W Q G L+GY++ + S +
Sbjct: 20 VAPLNVTVFLNESSDNVDIRWMKPPTKQQDGE--LVGYRISHVWQSAGISKELLEEVGQN 77
Query: 455 WVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLR 503
++ T T + A+ G P SD + +
Sbjct: 78 ---------GSRARISVQVHNATCTVRIAAVTRGG---VGPFSDPVKIF 114
Score = 27.8 bits (62), Expect = 7.5
Identities = 9/72 (12%), Positives = 20/72 (27%), Gaps = 7/72 (9%)
Query: 549 LTEVKPMTSTSVKLTWEILNTDYIEGV-----YIYSRGLDPPASVAMLTVLHAGEASGFL 603
+T +S +V + W T +G + + + V S
Sbjct: 25 VTVFLNESSDNVDIRWMKPPTKQQDGELVGYRISHVWQSAGISKELLEEV--GQNGSRAR 82
Query: 604 VTGLAHYSRYEF 615
++ H +
Sbjct: 83 ISVQVHNATCTV 94
>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A
{Homo sapiens} PDB: 1fnh_A
Length = 290
Score = 98.3 bits (245), Expect = 1e-22
Identities = 54/331 (16%), Positives = 93/331 (28%), Gaps = 71/331 (21%)
Query: 398 PGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVR 457
PT T L+ W+ N L GY+V + +P T +
Sbjct: 21 IPAPTDLKFTQVTPTSLSAQWTPPN----VQLTGYRVRV--------TPKEKTGPMKEIN 68
Query: 458 VATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKG 517
+A + S + V+ L V Y V AL S P + +V
Sbjct: 69 LAPDSSS--VVVSGLMVATKYEVSVYALKDTLTSRP---AQGVVTTLE------------ 111
Query: 518 IFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPMTSTSVKLTWEILNTDYIEGVYI 577
+ R V T T++ ++W I G +
Sbjct: 112 -------NVSPPRRAR------------------VTDATETTITISWRTKTET-ITGFQV 145
Query: 578 YSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVRTL 637
+ + + + + +TGL + Y+ +L + P + A
Sbjct: 146 DAVPANGQTPI---QRTIKPDVRSYTITGLQPGTDYKIYLYTLNDNARSSPVVIDA---- 198
Query: 638 ECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVG--GGNNSALINMTVS 695
L + S+L+ W+PP I Y I G ++
Sbjct: 199 STAIDAPSNLR-FLATTPNSLLVSWQPP-----RARITGYIIKYEKPGSPPREVVPRPRP 252
Query: 696 ASTPTLLLTNLSAGIRYSVSLAATNRAGTGP 726
T +T L G Y++ + A
Sbjct: 253 GVT-EATITGLEPGTEYTIYVIALKNNQKSE 282
Score = 86.4 bits (214), Expect = 1e-18
Identities = 30/178 (16%), Positives = 62/178 (34%), Gaps = 11/178 (6%)
Query: 551 EVKPMTSTSVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHY 610
+ +T TS+ W N + G + + + + + A ++S +V+GL
Sbjct: 28 KFTQVTPTSLSAQWTPPNVQ-LTGYRVRVTPKEKTGPMKEINL--APDSSSVVVSGLMVA 84
Query: 611 SRYEFFLVPFFGSVDGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTH 670
++YE + ++ +P+ P ++TD T++ + W+
Sbjct: 85 TKYEVSVYALKDTLTSRPAQGVVTTLENVSPPRRARVTD---ATETTITISWRTK----- 136
Query: 671 NGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYS 728
I +Q+ N I T+ + +T L G Y + L N
Sbjct: 137 TETITGFQVDAVPANGQTPIQRTIKPDVRSYTITGLQPGTDYKIYLYTLNDNARSSPV 194
Score = 62.1 bits (151), Expect = 2e-10
Identities = 35/240 (14%), Positives = 67/240 (27%), Gaps = 60/240 (25%)
Query: 394 PSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATA 453
PP + + + T +T++W + ++ G+QV+
Sbjct: 109 TLENVSPPRRARVTDATETTITISWRT----KTETITGFQVD-AV----------PANGQ 153
Query: 454 TWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSE 513
T ++ T+T L G Y + LN + S+P S
Sbjct: 154 TPIQRTIKPDVRSYTITGLQPGTDYKIYLYTLNDNARSSP-------------VVIDAST 200
Query: 514 GGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPMTSTSVKLTWEILNTDYIE 573
D A +L+ T S+ ++W+ I
Sbjct: 201 A---------ID---------APSNLR-----------FLATTPNSLLVSWQPPRAR-IT 230
Query: 574 GVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLRA 633
G I P + + +TGL + Y +++ + +P R
Sbjct: 231 GYIIKYEKPGSPPREVVPRP--RPGVTEATITGLEPGTEYTIYVIALKNNQKSEPLIGRK 288
Score = 54.0 bits (130), Expect = 8e-08
Identities = 16/91 (17%), Positives = 40/91 (43%), Gaps = 6/91 (6%)
Query: 653 LNATSVLLKWKPPPVGTHNGVIRTYQI-IVGGGNNSALINMTVSASTPTLLLTNLSAGIR 711
+ TS+ +W PP N + Y++ + + + ++ + +++++ L +
Sbjct: 32 VTPTSLSAQWTPP-----NVQLTGYRVRVTPKEKTGPMKEINLAPDSSSVVVSGLMVATK 86
Query: 712 YSVSLAATNRAGTGPYSRPALLSLTSGPEPR 742
Y VS+ A T ++ + +L + PR
Sbjct: 87 YEVSVYALKDTLTSRPAQGVVTTLENVSPPR 117
>2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding;
2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1
PDB: 2ibb_A
Length = 214
Score = 95.6 bits (238), Expect = 2e-22
Identities = 47/254 (18%), Positives = 77/254 (30%), Gaps = 60/254 (23%)
Query: 398 PGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVR 457
PPT P + + + L W ++ ++V+ W
Sbjct: 2 TYPPTPPNVTRLSDESVMLRWMVPRN-DGLPIVIFKVQYRM----------VGKRKNWQT 50
Query: 458 VATNVPSPIL------------TVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGT 505
N+P +VT+L TY F + A+ S+ + S S + L+
Sbjct: 51 TNDNIPYGKPKWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQPG 110
Query: 506 FSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPMTSTSVKLTWE 565
+ P EL E++ + T+V L W
Sbjct: 111 AALDPMPV----------P-----------------------ELLEIEEYSETAVVLHWS 137
Query: 566 ILNTD---YIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFG 622
+ + I G Y Y R T+ A F + L + YEF L F
Sbjct: 138 LASDADEHLITGYYAYYRPSSSAGEYFKATI-EGAHARSFKIAPLETATMYEFKLQSFSA 196
Query: 623 SVDGKPSNLRAVRT 636
+ + S L+ RT
Sbjct: 197 ASASEFSALKQGRT 210
Score = 70.2 bits (172), Expect = 1e-13
Identities = 32/200 (16%), Positives = 59/200 (29%), Gaps = 21/200 (10%)
Query: 551 EVKPMTSTSVKLTWEILNTD-------YIE-----GVYIYSRGLDPPASVAMLTVLHAGE 598
V ++ SV L W + D ++ + D G+
Sbjct: 9 NVTRLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWNSELGK 68
Query: 599 ASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSN----LRAVRTLECEPSGVPQLTDPVLLN 654
+ VT L Y F ++ + + D K SN +P VP+L + +
Sbjct: 69 SFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQPGAALDPMPVPELLEIEEYS 128
Query: 655 ATSVLLKWKPPPVGTHNGVIRTYQI---IVGGGNNSALINMTVSASTPTLLLTNLSAGIR 711
T+V+L W +I Y + + + + + L
Sbjct: 129 ETAVVLHWSLAS-DADEHLITGYYAYYRPSSSAGEYFKATIEGAHAR-SFKIAPLETATM 186
Query: 712 YSVSLAATNRAGTGPYSRPA 731
Y L + + A +S
Sbjct: 187 YEFKLQSFSAASASEFSALK 206
Score = 66.0 bits (161), Expect = 3e-12
Identities = 16/107 (14%), Positives = 31/107 (28%), Gaps = 11/107 (10%)
Query: 398 PGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVR 457
P + + + L WS + + GY RP S+ + +
Sbjct: 116 MPVPELLEIEEYSETAVVLHWSLASDADEHLITGYYAYY--RPSSSAGE--------YFK 165
Query: 458 VA-TNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLR 503
+ + L Y F +++ ++ S S L R
Sbjct: 166 ATIEGAHARSFKIAPLETATMYEFKLQSFSAASASEFSALKQGRTQR 212
Score = 47.9 bits (114), Expect = 5e-06
Identities = 21/114 (18%), Positives = 33/114 (28%), Gaps = 18/114 (15%)
Query: 641 PSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQII---VGGGNNSALINMTVSAS 697
P P +T L+ SV+L+W P I +++ VG N N +
Sbjct: 4 PPTPPNVTR---LSDESVMLRWMVPRND--GLPIVIFKVQYRMVGKRKNWQTTNDNIPYG 58
Query: 698 TP----------TLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGPEP 741
P T +T+L Y + A S +
Sbjct: 59 KPKWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQPGAA 112
>1uem_A KIAA1568 protein; immunoglobulin-like beta-sandwich fold,
fibronectin type III, structural genomics; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 117
Score = 92.4 bits (230), Expect = 2e-22
Identities = 37/115 (32%), Positives = 58/115 (50%), Gaps = 11/115 (9%)
Query: 389 FRAPEPSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSG 448
+ + S PGPP+KP + + T N +TL+W G+ Y +E +S
Sbjct: 7 GKNYDLSDLPGPPSKPQVTDVTKNSVTLSWQPGTP-GTLPASAYIIEAFS---------- 55
Query: 449 DTATATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLR 503
+ + +W VA +V + + TV L Y F+VRA+N GLS PSP+SD + +
Sbjct: 56 QSVSNSWQTVANHVKTTLYTVRGLRPNTIYLFMVRAINPQGLSDPSPMSDPVRTQ 110
Score = 40.0 bits (94), Expect = 5e-04
Identities = 22/103 (21%), Positives = 32/103 (31%), Gaps = 6/103 (5%)
Query: 640 EPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQI-IVGGGNNSALINMTVSAST 698
P PQ+TD + SV L W+P G Y I +++ + T
Sbjct: 17 GPPSKPQVTD---VTKNSVTLSWQPGTPG--TLPASAYIIEAFSQSVSNSWQTVANHVKT 71
Query: 699 PTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGPEP 741
+ L Y + A N G S + T P
Sbjct: 72 TLYTVRGLRPNTIYLFMVRAINPQGLSDPSPMSDPVRTQDSGP 114
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane,
cytoplasm, cytoskeleton, disease mutation,
immunoglobulin domain; NMR {Homo sapiens}
Length = 116
Score = 91.7 bits (228), Expect = 4e-22
Identities = 31/100 (31%), Positives = 41/100 (41%), Gaps = 5/100 (5%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN---L 63
F +P+S++V GD+ LEC P P L WK+N + F + D T L
Sbjct: 17 MFIYKPQSKKVLEGDSVKLEC-QISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTL 75
Query: 64 AIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYII 103
I+D K D G Y N AG L V +P
Sbjct: 76 LIKDVNKKDAGWYTVSAVNEAGVTTCN-TRLDVTARPNQT 114
Score = 90.9 bits (226), Expect = 7e-22
Identities = 25/107 (23%), Positives = 36/107 (33%), Gaps = 6/107 (5%)
Query: 89 STDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGS--AMPEDRMS 146
P I P+ V + EC + + WKR DR+S
Sbjct: 5 HHHHSHEHKRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRIS 64
Query: 147 VLPSR----SLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAP 189
+ +L + DV +DAG Y A N G + + L V P
Sbjct: 65 LYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTARP 111
Score = 75.9 bits (187), Expect = 1e-16
Identities = 27/122 (22%), Positives = 42/122 (34%), Gaps = 7/122 (5%)
Query: 174 VGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYP 233
+G + + AP+ +P ++ G C I PPP FW + +
Sbjct: 1 MGHHHHHHSHEHKRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNN-EMVQFN 59
Query: 234 GDRVDNIQAEITSDGMNLLKIQNVSRT-AAPLIILCLGVNAAGSDLARASLTVSGPDPNP 292
DR+ Q G L I++V++ A VN AG L V+
Sbjct: 60 TDRISLYQDN---TGRVTLLIKDVNKKDAG--WYTVSAVNEAGVTTCNTRLDVTARPNQT 114
Query: 293 PP 294
P
Sbjct: 115 LP 116
Score = 74.7 bits (184), Expect = 3e-16
Identities = 21/102 (20%), Positives = 41/102 (40%), Gaps = 7/102 (6%)
Query: 289 DPNPPPVILFGPANQTLPLRSEARLRCQVRG--EGSVQWWRGEREVGSGPR-----VNVT 341
+ P+ ++ P ++ + +L CQ+ + W R V + T
Sbjct: 11 EHKRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNT 70
Query: 342 GDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTN 383
G +L++ DV K+D+G YT + G + + L + N
Sbjct: 71 GRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTARPN 112
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin
superfamily, integrin-binding, cell adhesion protein;
1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A
1vsc_A
Length = 202
Score = 94.5 bits (234), Expect = 4e-22
Identities = 33/202 (16%), Positives = 60/202 (29%), Gaps = 23/202 (11%)
Query: 7 EFRVQPKSQRVA-AGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAI 65
+ P+S+ +A GD+ L C G P W+ N K + L +
Sbjct: 2 KIETTPESRYLAQIGDSVSLTC-STTGCESPFFSWRTQI--DSPLNGKVTNEGTTSTLTM 58
Query: 66 QDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGG 125
++ Y C + E + + P + A I +CSV
Sbjct: 59 NPVSFGNEHSYLCTATCESRKLEKG-IQVEIYSFPKDPEIHLSGPLEAGKPITVKCSVAD 117
Query: 126 D---AVLTVHWKRLGSAMP--------EDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAV 174
L + + M + + S + + V + VC A+ +
Sbjct: 118 VYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHI 177
Query: 175 GK-------ISASATLTVQMAP 189
+ A L V ++P
Sbjct: 178 DEMDSVPTVRQAVKELQVYISP 199
Score = 82.9 bits (204), Expect = 4e-18
Identities = 22/168 (13%), Positives = 47/168 (27%), Gaps = 7/168 (4%)
Query: 94 LRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKR-LGSAMPEDRMSVLPSRS 152
++ P + CS G W+ + S + + + +
Sbjct: 1 FKIETTP-----ESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTST 55
Query: 153 LQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGI 212
L ++ V + Y+C A K+ + + P E LE G+ C +
Sbjct: 56 LTMNPVSFGNEHSYLCTATCESRKLEKGIQVEIYSFPKDPEIHLSGPLEAGKPITVKCSV 115
Query: 213 EGSPP-PSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSR 259
P L L+ + +++ + + V
Sbjct: 116 ADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIE 163
Score = 77.9 bits (191), Expect = 2e-16
Identities = 24/200 (12%), Positives = 47/200 (23%), Gaps = 27/200 (13%)
Query: 195 PSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKI 254
S ++G C G P W + + L + L +
Sbjct: 8 ESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLN---------GKVTNEGTTSTLTM 58
Query: 255 QNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLR 314
VS LC + + + +P + L ++
Sbjct: 59 NPVSFGNEH-SYLCTATCESRKLEKGIQVEIYSFPKDPEI-----HLSGPLEAGKPITVK 112
Query: 315 CQVRG-----EGSVQWWRGEREVGSGPRVN-------VTGDGSLVLTDVTKEDSGEYTCV 362
C V + +G+ + S + T + T V ++ C
Sbjct: 113 CSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCR 172
Query: 363 VKSPHGSASWSASLRFESPT 382
K ++R
Sbjct: 173 AKLHIDEMDSVPTVRQAVKE 192
Score = 51.3 bits (122), Expect = 3e-07
Identities = 19/112 (16%), Positives = 36/112 (32%), Gaps = 7/112 (6%)
Query: 5 REEFRVQPKSQRVAAGDTALLECGPPRGHPEP--TLVWKKNGHPID----FENSKRLRLV 58
+ S + AG ++C +P + K H + E++ R L
Sbjct: 91 FPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLE 150
Query: 59 DGTNLAIQDSRKTDDGR-YQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDT 109
+ D G+ C K +S V + + + + PK+T
Sbjct: 151 TKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVYISPKNT 202
Score = 50.5 bits (120), Expect = 4e-07
Identities = 17/122 (13%), Positives = 29/122 (23%), Gaps = 14/122 (11%)
Query: 311 ARLRCQVRG--EGSVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHG 368
L C G W +G N +L + V+ + Y C
Sbjct: 19 VSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESR 78
Query: 369 SASWSASLRFESPTN----PNIGFFRAPEPSTY--PGPPTKPTLVNQTANGLTLAWSRNN 422
+ S G A +P T P + L + + +
Sbjct: 79 KLEKGIQVEIYSFPKDPEIHLSGPLEAGKPITVKCSVADVYP------FDRLEIDLLKGD 132
Query: 423 QI 424
+
Sbjct: 133 HL 134
>1x5x_A Fibronectin type-III domain containing protein 3A; structural
genomics, KIAA0970, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 109
Score = 90.5 bits (225), Expect = 7e-22
Identities = 27/113 (23%), Positives = 39/113 (34%), Gaps = 11/113 (9%)
Query: 391 APEPSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDT 450
S+ P P P L L+L WS+ + S + Y +EM +
Sbjct: 1 GSSGSSGPSMPASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEME-----------EE 49
Query: 451 ATATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLR 503
+ + + TV NL Y F V A NS G S PS + +
Sbjct: 50 TSGYGFKPKYDGEDLAYTVKNLRRSTKYKFKVIAYNSEGKSNPSEVVEFTTCP 102
Score = 40.8 bits (96), Expect = 2e-04
Identities = 20/108 (18%), Positives = 32/108 (29%), Gaps = 6/108 (5%)
Query: 636 TLECEPS--GVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMT 693
+ PS P LT T + L+W P GT + +Y + + +
Sbjct: 3 SGSSGPSMPASPVLTK---AGITWLSLQWSKPS-GTPSDEGISYILEMEEETSGYGFKPK 58
Query: 694 VSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGPEP 741
+ NL +Y + A N G S + P
Sbjct: 59 YDGEDLAYTVKNLRRSTKYKFKVIAYNSEGKSNPSEVVEFTTCPDSGP 106
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system;
3.00A {Homo sapiens}
Length = 193
Score = 93.1 bits (231), Expect = 9e-22
Identities = 38/195 (19%), Positives = 69/195 (35%), Gaps = 30/195 (15%)
Query: 12 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDF----------------ENSKRL 55
P G++ L P G + W N + F + KRL
Sbjct: 5 PLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRL 64
Query: 56 RLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRV--LVKPYIIRGPKDTTVSA 113
+L + + + D G Y+ + + S+ + + L + + +
Sbjct: 65 NFTQSYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQ-LFQNM 123
Query: 114 SSIIVFECSV--GGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLS-DVRLEDAGEYVCEA 170
+ + CSV D V + W+ LG+ ++ +L +S D R+ +Y C A
Sbjct: 124 TCELHLTCSVEDADDNV-SFRWEALGN-------TLSSQPNLTVSWDPRISSEQDYTCIA 175
Query: 171 ENAVGKISASATLTV 185
ENAV +S S +
Sbjct: 176 ENAVSNLSFSVSAQK 190
Score = 49.6 bits (118), Expect = 8e-07
Identities = 22/137 (16%), Positives = 42/137 (30%), Gaps = 23/137 (16%)
Query: 117 IVFECSV-GGDAVLTVHWKRLGSA-------------------MPEDRMSVLPSRSLQLS 156
+ G+ V + W ++ R++ S SLQLS
Sbjct: 16 VTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQLS 75
Query: 157 DVRLEDAGEYVCEAENAVGKISASATLT-VQMAPIVRERPSDLRLEVGRDAVFL--CGIE 213
++++ED G Y + +S TL ++ ++ + + L +
Sbjct: 76 NLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNMTCELHLTCSVED 135
Query: 214 GSPPPSTFWMLEGNRSL 230
S W GN
Sbjct: 136 ADDNVSFRWEALGNTLS 152
Score = 49.2 bits (117), Expect = 1e-06
Identities = 29/189 (15%), Positives = 56/189 (29%), Gaps = 24/189 (12%)
Query: 202 VGRDAVFLCGIEGSPPPSTF-WMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRT 260
+G + W+ N + + + EI K N +++
Sbjct: 12 LGESVTLPLEFPAGEKVNFITWLF--NETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQS 69
Query: 261 AAPLIILCLGVNAAGS---------DLARASLTVSGPDPNPPPVILFGPANQTLPLRSEA 311
+ L + L + GS +S T+ + + E
Sbjct: 70 YS-LQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHS-QLFQNMTCEL 127
Query: 312 RLRCQVRGEG---SVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHG 368
L C V S +W + S P + V+ D +YTC+ ++
Sbjct: 128 HLTCSVEDADDNVSFRWEALGNTLSSQPNLTVS-------WDPRISSEQDYTCIAENAVS 180
Query: 369 SASWSASLR 377
+ S+S S +
Sbjct: 181 NLSFSVSAQ 189
Score = 44.2 bits (104), Expect = 5e-05
Identities = 19/98 (19%), Positives = 34/98 (34%), Gaps = 8/98 (8%)
Query: 335 GPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLR-FESPTNPNIGFFRAPE 393
G R+N T SL L+++ ED+G Y + + + S +LR N +
Sbjct: 61 GKRLNFTQSYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVT----NH 116
Query: 394 PSTYPGPPTKPTLVNQTANG---LTLAWSRNNQIGSSS 428
+ + L + ++ W SS
Sbjct: 117 SQLFQNMTCELHLTCSVEDADDNVSFRWEALGNTLSSQ 154
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P
structural and functional analyses, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
Length = 113
Score = 90.1 bits (224), Expect = 1e-21
Identities = 33/117 (28%), Positives = 49/117 (41%), Gaps = 12/117 (10%)
Query: 272 NAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRGEGSVQWWRGERE 331
++ S A LTV P G N+ + A LRC++ V+WW+G
Sbjct: 2 SSGSSGRTSAMLTVRAL----PIKFTEGLRNEEATEGATAVLRCELSKMAPVEWWKGHET 57
Query: 332 VGSGPRVNVTGDG---SLVLTDVTKEDSGEYTCVVKSPHGSASWSASLR-FESPTNP 384
+ G R ++ DG L + + ED+GEY C+ G SA L P+ P
Sbjct: 58 LRDGDRHSLRQDGARCELQIRGLVAEDAGEYLCMC----GKERTSAMLTVRAMPSGP 110
Score = 81.6 bits (202), Expect = 1e-18
Identities = 32/111 (28%), Positives = 47/111 (42%), Gaps = 11/111 (9%)
Query: 84 AGTRESTDAVLRVLVKPY-IIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAM-P 141
+G+ T A+L V P G ++ + + V C + A V W + +
Sbjct: 3 SGSSGRTSAMLTVRALPIKFTEGLRNEEATEGATAVLRCELSKMA--PVEWWKGHETLRD 60
Query: 142 EDRMSVLPS---RSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAP 189
DR S+ LQ+ + EDAGEY+C GK SA LTV+ P
Sbjct: 61 GDRHSLRQDGARCELQIRGLVAEDAGEYLCMC----GKERTSAMLTVRAMP 107
Score = 67.8 bits (166), Expect = 8e-14
Identities = 24/97 (24%), Positives = 35/97 (36%), Gaps = 13/97 (13%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV-DGTN--L 63
+F +++ G TA+L C + W K + + R L DG L
Sbjct: 21 KFTEGLRNEEATEGATAVLRC---ELSKMAPVEWWKGHETL--RDGDRHSLRQDGARCEL 75
Query: 64 AIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKP 100
I+ D G Y C+ E T A+L V P
Sbjct: 76 QIRGLVAEDAGEYLCMCGK-----ERTSAMLTVRAMP 107
Score = 53.5 bits (129), Expect = 9e-09
Identities = 29/125 (23%), Positives = 43/125 (34%), Gaps = 19/125 (15%)
Query: 172 NAVGKISASATLTVQ-MAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSL 230
++ SA LTV+ + E + G AV C + P W
Sbjct: 2 SSGSSGRTSAMLTVRALPIKFTEGLRNEEATEGATAVLRCELSKMAPVE--WWKGHE--T 57
Query: 231 IYPGDRVDNIQAEITSDGMN-LLKIQNVSRT-AAPLIILCLGVNAAGSDLARASLTVSGP 288
+ GDR + DG L+I+ + A LC+ G + A LTV
Sbjct: 58 LRDGDRH-----SLRQDGARCELQIRGLVAEDAG--EYLCM----CGKERTSAMLTVRAM 106
Query: 289 DPNPP 293
P+ P
Sbjct: 107 -PSGP 110
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody,
immune system; HET: NAG BMA MAN FUC; 2.20A {Homo
sapiens} PDB: 3sgk_C*
Length = 204
Score = 93.0 bits (231), Expect = 1e-21
Identities = 30/182 (16%), Positives = 58/182 (31%), Gaps = 19/182 (10%)
Query: 10 VQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSR 69
++P+ RV D+ L+C + + W N I ++ I +
Sbjct: 12 LEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLIS---------SQASSYFIDAAT 62
Query: 70 KTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSV-GGDAV 128
D G Y+C + + S L V + +++ P+ I C A+
Sbjct: 63 VDDSGEYRCQTQL---STLSDPVQLEVHIGWLLLQAPRWVFKEEDP-IHLRCHSWKNTAL 118
Query: 129 LTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVG-KISASATLTVQM 187
V + + G + + L+D+G Y C S + +T+
Sbjct: 119 HKVTYLQNGKGRK----YFHHNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITITQ 174
Query: 188 AP 189
Sbjct: 175 GL 176
Score = 78.4 bits (193), Expect = 1e-16
Identities = 29/209 (13%), Positives = 59/209 (28%), Gaps = 25/209 (11%)
Query: 97 LVKPYIIRGPKDTTVSASSIIVFECSVGGD-AVLTVHWKRLGSAMPEDRMSVLPSRSLQL 155
L K + P+ V + +C + W S + + S +
Sbjct: 5 LPKAVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQ------ASSYFI 58
Query: 156 SDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGS 215
++D+GEY C+ + +S L V + ++ + P + E C +
Sbjct: 59 DAATVDDSGEYRCQTQL--STLSDPVQLEVHIGWLLLQAPRWVFKE-EDPIHLRCHSWKN 115
Query: 216 PPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAG 275
L+ + Y D I + + C G+ +
Sbjct: 116 TALHKVTYLQNGKGRKYFHHNSD-------------FYIPKATLKDSGSYF-CRGLVGSK 161
Query: 276 SDL-ARASLTVSGPDPNPPPVILFGPANQ 303
+ +T++ F P Q
Sbjct: 162 NVSSETVQITITQGLAVSTISSFFPPGYQ 190
Score = 54.9 bits (132), Expect = 2e-08
Identities = 12/93 (12%), Positives = 26/93 (27%), Gaps = 7/93 (7%)
Query: 10 VQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSR 69
+Q D L C + + + +NG + + ++ I +
Sbjct: 93 LQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYFHH-------NSDFYIPKAT 145
Query: 70 KTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYI 102
D G Y C + S + + +
Sbjct: 146 LKDSGSYFCRGLVGSKNVSSETVQITITQGLAV 178
Score = 51.4 bits (123), Expect = 2e-07
Identities = 25/143 (17%), Positives = 44/143 (30%), Gaps = 21/143 (14%)
Query: 292 PPPVILFGPANQTLPLRSEARLRCQVRG---EGSVQWWRGEREVGSGPRVNVTGDGSLVL 348
P V+ P + + L+CQ + S QW+ E + + S +
Sbjct: 6 PKAVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLIS-------SQASSYFI 58
Query: 349 TDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTL-- 406
T +DSGEY C + + S L + +AP P L
Sbjct: 59 DAATVDDSGEYRCQTQ--LSTLSDPVQLEVHIG--WLL--LQAPRWVFKEEDPI--HLRC 110
Query: 407 -VNQTANGLTLAWSRNNQIGSSS 428
+ + + +N +
Sbjct: 111 HSWKNTALHKVTYLQNGKGRKYF 133
Score = 50.7 bits (121), Expect = 5e-07
Identities = 34/218 (15%), Positives = 56/218 (25%), Gaps = 38/218 (17%)
Query: 189 PIVRERPSDLRLEVGRDAVFLCGIEGSPPP-STFWMLEGNRSLIYPGDRVDNIQAEITSD 247
+V P R+ C SP ST W + I+S
Sbjct: 8 AVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESL---------------ISSQ 52
Query: 248 GMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPL 307
+ I + + C + SD L V ++L P
Sbjct: 53 ASSYF-IDAATVDDSGEYR-CQTQLSTLSD--PVQLEVH-----IGWLLLQAPRWVFKE- 102
Query: 308 RSEARLRCQVRGEGS---VQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVK 364
LRC + V + + + + + T +DSG Y C
Sbjct: 103 EDPIHLRCHSWKNTALHKVTYLQNGKGRKY-----FHHNSDFYIPKATLKDSGSYFCRGL 157
Query: 365 SPHGSASWSASLR---FESPTNPNIGFFRAPEPSTYPG 399
+ S S +++ + I F P
Sbjct: 158 VGSKNVS-SETVQITITQGLAVSTISSFFPPGYQGKKK 194
>2yux_A Myosin-binding protein C, SLOW-type; fibronectin III domain,
structural genomics., NPPSFA; NMR {Homo sapiens}
Length = 120
Score = 90.1 bits (224), Expect = 1e-21
Identities = 24/104 (23%), Positives = 42/104 (40%), Gaps = 11/104 (10%)
Query: 398 PGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVR 457
PGPP + + + L W+ G++++ GY ++ D + W
Sbjct: 18 PGPPQIVKIEDVWGENVALTWTPPKDDGNAAITGYTIQKA-----------DKKSMEWFT 66
Query: 458 VATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIV 501
V + T+T L +G Y F V + N GLS + ++ E
Sbjct: 67 VIEHYHRTSATITELVIGNEYYFRVFSENMCGLSEDATMTKESA 110
Score = 41.2 bits (97), Expect = 2e-04
Identities = 18/104 (17%), Positives = 33/104 (31%), Gaps = 4/104 (3%)
Query: 640 EPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTP 699
P + ++ D + +V L W PP N I Y I + +
Sbjct: 19 GPPQIVKIED---VWGENVALTWTPPKD-DGNAAITGYTIQKADKKSMEWFTVIEHYHRT 74
Query: 700 TLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGPEPRL 743
+ +T L G Y + + N G + S + ++
Sbjct: 75 SATITELVIGNEYYFRVFSENMCGLSEDATMTKESAVIARDGKI 118
>1x5y_A Myosin binding protein C, fast-type; fast MYBP-C, fibronectin type
III domain containing protein, cytoskeleton, muscle
contraction; NMR {Mus musculus} SCOP: b.1.2.1
Length = 111
Score = 89.0 bits (221), Expect = 2e-21
Identities = 27/107 (25%), Positives = 39/107 (36%), Gaps = 12/107 (11%)
Query: 398 PGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVR 457
P T+ + T TL W ++IG+ + GY VE + WV
Sbjct: 9 TSAPQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYC-----------LEGSEEWVP 57
Query: 458 VAT-NVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLR 503
V TV +L G F V +N G S P+ L + +R
Sbjct: 58 ANKEPVERCGFTVKDLPTGARILFRVVGVNIAGRSEPATLLQPVTIR 104
Score = 41.2 bits (97), Expect = 1e-04
Identities = 20/97 (20%), Positives = 31/97 (31%), Gaps = 4/97 (4%)
Query: 636 TLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQI--IVGGGNNSALINMT 693
+ P+ PQ + T+ LKW+PP G I Y + + G N
Sbjct: 3 SGSSGPTSAPQHLTVEDVTDTTTTLKWRPPDR-IGAGGIDGYLVEYCLEGSEEWVPAN-K 60
Query: 694 VSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRP 730
+ +L G R + N AG +
Sbjct: 61 EPVERCGFTVKDLPTGARILFRVVGVNIAGRSEPATL 97
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex,
alternative splicing, ATP-binding, calcium,
calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens}
PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Length = 107
Score = 89.0 bits (221), Expect = 3e-21
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 4/96 (4%)
Query: 98 VKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED-RMSVLPS---RSL 153
P +R P+ V + + +C V G+ V W++ G + R+S L
Sbjct: 12 SPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGL 71
Query: 154 QLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAP 189
L+ DAG YVC A NA G+ A+A +TV P
Sbjct: 72 LLTAALPTDAGVYVCRARNAAGEAYAAAAVTVLEPP 107
Score = 85.1 bits (211), Expect = 5e-20
Identities = 31/97 (31%), Positives = 43/97 (44%), Gaps = 7/97 (7%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV---DGTNL 63
F P+ RV +G A L+C G P P +VW+K G + S+RL L
Sbjct: 15 CFLRFPRPVRVVSGAEAELKC-VVLGEPPPVVVWEKGGQQL--AASERLSFPADGAEHGL 71
Query: 64 AIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKP 100
+ + TD G Y C +N AG + A + VL P
Sbjct: 72 LLTAALPTDAGVYVCRARNAAGEAYAA-AAVTVLEPP 107
Score = 83.2 bits (206), Expect = 3e-19
Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 5/102 (4%)
Query: 285 VSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG--EGSVQWWRGEREVGSGPRVNVTG 342
S D PP L P + +EA L+C V G V W +G +++ + R++
Sbjct: 5 ASSGDQGSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPA 64
Query: 343 DG---SLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESP 381
DG L+LT D+G Y C ++ G A +A++ P
Sbjct: 65 DGAEHGLLLTAALPTDAGVYVCRARNAAGEAYAAAAVTVLEP 106
Score = 62.0 bits (151), Expect = 6e-12
Identities = 28/111 (25%), Positives = 45/111 (40%), Gaps = 11/111 (9%)
Query: 180 SATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDN 239
+++ P P +R+ G +A C + G PPP W G + +R+
Sbjct: 5 ASSGDQGSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQ--QLAASERL-- 60
Query: 240 IQAEITSDG-MNLLKIQNVSRT-AAPLIILCLGVNAAGSDLARASLTVSGP 288
+DG + L + T A + +C NAAG A A++TV P
Sbjct: 61 ---SFPADGAEHGLLLTAALPTDAG--VYVCRARNAAGEAYAAAAVTVLEP 106
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
receptor/immune system complex; 3.80A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
PDB: 3loh_E
Length = 897
Score = 98.5 bits (244), Expect = 4e-21
Identities = 52/394 (13%), Positives = 100/394 (25%), Gaps = 81/394 (20%)
Query: 359 YTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGLTLAW 418
+ S + + T+ P P P V+ +++ + L W
Sbjct: 569 LVTFSDERRTYGAKSDIIYVQ--TDATN-----------PSVPLDPISVSNSSSQIILKW 615
Query: 419 S----RNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTV 474
N I Y V + + + +
Sbjct: 616 KPPSDPNGNI-----THYLVFWERQA--------EDSELFELDYCLKGLKLPSR------ 656
Query: 475 GLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRR 534
T++ + +S + +
Sbjct: 657 --TWSPPFESEDSQKHNQSEYED--------------------------SAGECCSCPKT 688
Query: 535 ARQHLQEGGGSLIELTEVKPMTSTSVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVL 594
Q L+E S T + + + + + V+
Sbjct: 689 DSQILKELEESSFRKT----FEDYLHNVVFVPRPSRKRRSLGDVGNAGNNEEHRPFEKVV 744
Query: 595 HAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLRA---VRTLECE-PSGVPQLTDP 650
+ +++GL H++ Y L + ++ A RT+ +
Sbjct: 745 NKES---LVISGLRHFTGYRIELQACNQDTPEERCSVAAYVSARTMPEAKADDIVGPVTH 801
Query: 651 VLLNATSVLLKWKPPPVGTHNGVIRTYQI---IVGGGNNSALINMTVSASTPTLLLTNLS 707
+ V L W+ P NG+I Y++ G A L LS
Sbjct: 802 EIFENNVVHLMWQEPK--EPNGLIVLYEVSYRRYGDEELHLCDTRKHFALERGCRLRGLS 859
Query: 708 AGIRYSVSLAATNRAGTGPYSRPALLSLTSGPEP 741
G YSV + AT+ AG G ++ P +T +
Sbjct: 860 PG-NYSVRIRATSLAGNGSWTEPTYFYVTDYLDV 892
Score = 69.2 bits (168), Expect = 5e-12
Identities = 42/376 (11%), Positives = 88/376 (23%), Gaps = 67/376 (17%)
Query: 378 FESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMY 437
+I + ++ K + + + + + L W LLG+ +
Sbjct: 449 KGRQERNDIALKTNGDQASCENELLKFSYIRTSFDKILLRWEPYWPPDFRDLLGFMLFYK 508
Query: 438 SRPLPSSSPSG-------------DTATATWVRVATNVPSPILTVTNLTVGLTYTFLVRA 484
P + + D + P + L Y V+
Sbjct: 509 EAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQNHPGWLMRGLKPWTQYAIFVKT 568
Query: 485 LN--SHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEG 542
L S SD I ++ T P
Sbjct: 569 LVTFSDERRTYGAKSDIIYVQ-T--------------DATNP------------------ 595
Query: 543 GGSLIELTEVKPMTSTSVKLTWEILNTDY--IEGVYIYSRGLDPPASVAMLTVLHAGEAS 600
S+ +S+ + L W+ + I ++ + + L G
Sbjct: 596 --SVPLDPISVSNSSSQIILKWKPPSDPNGNITHYLVFWERQAEDSELFELDYCLKGLKL 653
Query: 601 GFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLL 660
+ + + P Q+ + +S
Sbjct: 654 P--------SRTWSPPFESEDSQKHNQSEYEDSAGECCSCPKTDSQILKEL--EESSFRK 703
Query: 661 KWKPP-----PVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRYSVS 715
++ V + R+ + GNN + +L+++ L Y +
Sbjct: 704 TFEDYLHNVVFVPRPSRKRRSLGDVGNAGNNEEHRPFEKVVNKESLVISGLRHFTGYRIE 763
Query: 716 LAATNRAGTGPYSRPA 731
L A N+ A
Sbjct: 764 LQACNQDTPEERCSVA 779
Score = 49.1 bits (116), Expect = 6e-06
Identities = 27/221 (12%), Positives = 49/221 (22%), Gaps = 29/221 (13%)
Query: 284 TVSGPDPNPPPVILFGPANQTLPLRSEARL-------RCQVRGEGSVQWWRGEREVGSGP 336
P IL + E L R + P
Sbjct: 680 GECCSCPKTDSQILKELEESSFRKTFEDYLHNVVFVPRPSRKRRSLGDVGNAGNNEEHRP 739
Query: 337 RVNVTGDGSLVLTDVTKEDSGEYTCVVK--SPHGSASWSASLRFESPTNPNIGFFRAPEP 394
V SLV++ + Y ++ + + R
Sbjct: 740 FEKVVNKESLVISGLRH--FTGYRIELQACNQDTPEERCSV--------AAYVSARTMPE 789
Query: 395 STYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATAT 454
+ T N + L W + ++ Y+V GD
Sbjct: 790 AKADDIVGPVTHEIFENNVVHLMWQEPKEPNGL-IVLYEVSYR--------RYGDEELHL 840
Query: 455 WVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSP 495
+ L+ G Y+ +RA + G + +
Sbjct: 841 CDTRKHFALERGCRLRGLSPG-NYSVRIRATSLAGNGSWTE 880
Score = 47.2 bits (111), Expect = 2e-05
Identities = 30/263 (11%), Positives = 60/263 (22%), Gaps = 57/263 (21%)
Query: 392 PEPSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTA 451
S + +++ T +N + + R L +G+
Sbjct: 681 ECCSCPKTDSQILKELEESSFRKTFEDYLHNVV-----FVPRPSRKRRSLGDVGNAGNNE 735
Query: 452 TATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIF 511
N S L ++ L Y ++A N ++ + R
Sbjct: 736 EHRPFEKVVNKES--LVISGLRHFTGYRIELQACNQDTPEERCSVAAYVSARTMPEAK-- 791
Query: 512 SEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPMTSTSVKLTWE------ 565
D ++ + + V L W+
Sbjct: 792 ------------AD-------------------DIVGPVTHEIFENNVVHLMWQEPKEPN 820
Query: 566 --ILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGS 623
I+ Y + R T H G + GL Y + +
Sbjct: 821 GLIVL--YE----VSYRRYGDEELHLCDTRKHFALERGCRLRGL-SPGNYSVRIRATSLA 873
Query: 624 VDGKPSNLRAVRTLECE--PSGV 644
+G + + PS +
Sbjct: 874 GNGSWTEPTYFYVTDYLDVPSNI 896
>2edy_A Receptor-type tyrosine-protein phosphatase F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 103
Score = 88.1 bits (219), Expect = 4e-21
Identities = 24/96 (25%), Positives = 37/96 (38%), Gaps = 2/96 (2%)
Query: 635 RTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTV 694
+ PSG PQ L ++ L W PP + NG I +Y ++ N+ +
Sbjct: 2 SSGSSGPSGFPQNLHVTGLTTSTTELAWDPPVLAERNGRIISYTVVFRDINSQQ--ELQN 59
Query: 695 SASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRP 730
+ LT L Y + + A G+GP S
Sbjct: 60 ITTDTRFTLTGLKPDTTYDIKVRAWTSKGSGPLSPS 95
Score = 41.1 bits (97), Expect = 1e-04
Identities = 30/114 (26%), Positives = 38/114 (33%), Gaps = 24/114 (21%)
Query: 393 EPSTYPGPPTKPTLVNQTANGLTLAWS---RNNQIGSSSLLGYQVEMYSRPLPSSSPSGD 449
PS G P + T + LAW + G ++ Y V R + S +
Sbjct: 7 GPS---GFPQNLHVTGLTTSTTELAWDPPVLAERNGR--IISYTV--VFRDINSQQELQN 59
Query: 450 TATATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLR 503
T T T+T L TY VRA S G PLS I R
Sbjct: 60 ITTDTRF-----------TLTGLKPDTTYDIKVRAWTSKG---SGPLSPSIQSR 99
Score = 30.0 bits (68), Expect = 0.99
Identities = 16/91 (17%), Positives = 34/91 (37%), Gaps = 9/91 (9%)
Query: 551 EVKPMTSTSVKLTWEILNTDYIEGV----YIYSRGLDPPASVAMLTVLHAGEASGFLVTG 606
V +T+++ +L W+ G + R ++ + +T + F +TG
Sbjct: 16 HVTGLTTSTTELAWDPPVLAERNGRIISYTVVFRDINSQQELQNITT-----DTRFTLTG 70
Query: 607 LAHYSRYEFFLVPFFGSVDGKPSNLRAVRTL 637
L + Y+ + + G S RT+
Sbjct: 71 LKPDTTYDIKVRAWTSKGSGPLSPSIQSRTM 101
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo
sapiens}
Length = 99
Score = 87.3 bits (217), Expect = 7e-21
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 4/95 (4%)
Query: 96 VLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED-RMSVLPS---R 151
+ KP I+ G +DTTVS+ S+ F G+ T W + G A+ + + +
Sbjct: 3 ISSKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGF 62
Query: 152 SLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQ 186
L++ D+G Y C +N+ G +S+S LT++
Sbjct: 63 FLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIK 97
Score = 80.0 bits (198), Expect = 2e-18
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
Query: 293 PPVILFGPANQTLPLRSEARLRCQVRG--EGSVQWWRGEREVGSGPRVNVTGDG---SLV 347
PVI+ G + T+ S A+ + G + W + + + G + ++ D L
Sbjct: 6 KPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLE 65
Query: 348 LTDVTKEDSGEYTCVVKSPHGSASWSASL 376
+ DSG YTC VK+ GS S S L
Sbjct: 66 IHKTDTSDSGLYTCTVKNSAGSVSSSCKL 94
Score = 78.9 bits (195), Expect = 7e-18
Identities = 25/93 (26%), Positives = 37/93 (39%), Gaps = 7/93 (7%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV---DGTNL 63
+ V++ A G P PT +W K+G I + +L G L
Sbjct: 8 VIVTGLQDTTVSSDSVAKFAV-KATGEPRPTAIWTKDGKAI--TQGGKYKLSEDKGGFFL 64
Query: 64 AIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRV 96
I + +D G Y C VKN AG+ S+ L +
Sbjct: 65 EIHKTDTSDSGLYTCTVKNSAGS-VSSSCKLTI 96
Score = 59.2 bits (144), Expect = 5e-11
Identities = 22/105 (20%), Positives = 39/105 (37%), Gaps = 11/105 (10%)
Query: 185 VQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEI 244
+ P++ D + A F G P P+ W +G I G + ++
Sbjct: 3 ISSKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGK--AITQGGKY-----KL 55
Query: 245 TSD-GMNLLKIQNVSRT-AAPLIILCLGVNAAGSDLARASLTVSG 287
+ D G L+I + + + C N+AGS + LT+
Sbjct: 56 SEDKGGFFLEIHKTDTSDSG--LYTCTVKNSAGSVSSSCKLTIKA 98
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY
acidic protein fold, fibronectin type III fold, hormone-
growth factor complex; NMR {Homo sapiens}
Length = 680
Score = 97.3 bits (241), Expect = 8e-21
Identities = 53/411 (12%), Positives = 97/411 (23%), Gaps = 86/411 (20%)
Query: 353 KEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTAN 412
E SG C + +L P P + +
Sbjct: 132 NECSGVKKCCSNGCGHTCQVPKTLYKGVP----------------LKPRKELRFTELQSG 175
Query: 413 GLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNL 472
L + WS S + Y V+ S T W VA + +T++
Sbjct: 176 QLEVKWSSKFN-ISIEPVIYVVQRRWNYGIHPSEDDAT---HWQTVAQ-TTDERVQLTDI 230
Query: 473 TVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESL 532
Y F V A+N HG + S S +L
Sbjct: 231 RPSRWYQFRVAAVNVHGTRGFTAPSKHFRSSKDPSAP-----------------PAPANL 273
Query: 533 RRARQHLQEGGGSLIELTEVKPMTSTSVKLTWEILNTDY--IEGVYIYSRGLDPPASVAM 590
R + + V S +V + W++ + ++ + S+
Sbjct: 274 R-------------LANSTVNSDGSVTVTIVWDLPEEPDIPVHHYKVFWSWMVSSKSLVP 320
Query: 591 LTVLHA----GEASGFLVTGLAHYSRYEF----------------FLVPFFGSVDGKPSN 630
G + ++ L Y + F S +
Sbjct: 321 TKKKRRKTTDGFQNSVILEKLQPDCDYVVELQAITYWGQTRLKSAKVSLHFTSTHATNNK 380
Query: 631 LRAVRTLECEPSGVPQLTDPV------------LLNATSVLLKWKPPPVGTHNG-VIRTY 677
+ V+T + V + WK T N +R +
Sbjct: 381 EQLVKTRKGGIQTQLPFQRRRPTRPLEVGAPFYQDGQLQVKVYWKKTEDPTVNRYHVRWF 440
Query: 678 QIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYS 728
+ + ++L +LS +Y V++
Sbjct: 441 PEACAHNRTTGSEASSGMTHENYIILQDLSFSCKYKVTVQPIRPKSHSKAE 491
Score = 95.4 bits (236), Expect = 3e-20
Identities = 71/518 (13%), Positives = 141/518 (27%), Gaps = 96/518 (18%)
Query: 271 VNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRGEGS-------V 323
N G G P + F + ++ + S V
Sbjct: 142 SNGCGHTCQVPKTLYKGVPLKPRKELRFTELQSG-----QLEVKWSSKFNISIEPVIYVV 196
Query: 324 QWWRG------EREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVK--SPHGSASWSAS 375
Q E + V T D + LTD+ S Y V + HG+ ++A
Sbjct: 197 QRRWNYGIHPSEDDATHWQTVAQTTDERVQLTDIRP--SRWYQFRVAAVNVHGTRGFTAP 254
Query: 376 LRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANG-----LTLAWS----RNNQIGS 426
+ FR+ + + P P L N T N +T+ W + +
Sbjct: 255 SKH----------FRSSKDPSAPPAPANLRLANSTVNSDGSVTVTIVWDLPEEPDIPV-- 302
Query: 427 SSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVGLTYTFLVRALN 486
Y+V S T R T+ + + L Y ++A+
Sbjct: 303 ---HHYKVFW----SWMVSSKSLVPTKKKRRKTTDGFQNSVILEKLQPDCDYVVELQAIT 355
Query: 487 SHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSL 546
G + S ++ L T + ++ + RR + L+ G
Sbjct: 356 YWGQTRLK--SAKVSLHFTSTHATNNKEQLVKTRKGGIQTQLPFQRRRPTRPLEVG---- 409
Query: 547 IELTEVKPMTSTSVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASG--FLV 604
VK+ W+ + ++ + + +G ++
Sbjct: 410 ---APFYQDGQLQVKVYWKKTEDPTVNRYHVRWFPEACAHNRTTGSEASSGMTHENYIIL 466
Query: 605 TGLAHYSRYEFFLVPFFGSVDGKPSNL------------RAVRTLECEPSGVPQLTDPVL 652
L+ +Y+ + P K + ++ + + C L+ +
Sbjct: 467 QDLSFSCKYKVTVQPIRPKSHSKAEAVFFTTPPCSALKGKSHKPIGCLGEAGHVLSKVLA 526
Query: 653 ------------LNATSVLLKWKPPPVGTHNGVIRTYQI----IVGGGNNSALINMTVS- 695
+ WK + +Q+ + ++L N +S
Sbjct: 527 KPENLSASFIVQDVNITGHFSWKMAKA-NLYQPMTGFQVTWAEVTTESRQNSLPNSIISQ 585
Query: 696 -----ASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYS 728
+ L + NL Y + + G GP +
Sbjct: 586 SQILPSDHYVLTVPNLRPSTLYRLEVQVLTPGGEGPAT 623
Score = 71.9 bits (175), Expect = 5e-13
Identities = 27/212 (12%), Positives = 57/212 (26%), Gaps = 24/212 (11%)
Query: 551 EVKPMTSTSVKLTWE-------ILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFL 603
+ S +++ W ++ + Y + TV +
Sbjct: 168 RFTELQSGQLEVKWSSKFNISIEPVIYVVQRRWNYGIHPSEDDATHWQTVAQTTDER-VQ 226
Query: 604 VTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVRTLECEPSGVPQLTDPVLLNAT------- 656
+T + Y+F + + +PS P + L N+T
Sbjct: 227 LTDIRPSRWYQFRVAAVNVHGTRGFTAPSKHFRSSKDPSAPPAPANLRLANSTVNSDGSV 286
Query: 657 SVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALIN-------MTVSASTPTLLLTNLSAG 709
+V + W P + + Y++ +S + T +++L L
Sbjct: 287 TVTIVWDLPE--EPDIPVHHYKVFWSWMVSSKSLVPTKKKRRKTTDGFQNSVILEKLQPD 344
Query: 710 IRYSVSLAATNRAGTGPYSRPALLSLTSGPEP 741
Y V L A G + +
Sbjct: 345 CDYVVELQAITYWGQTRLKSAKVSLHFTSTHA 376
Score = 55.0 bits (131), Expect = 1e-07
Identities = 65/500 (13%), Positives = 133/500 (26%), Gaps = 81/500 (16%)
Query: 72 DDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIV---FECSVGGDAV 128
G +C N G L V + + T + + + V + ++ + V
Sbjct: 134 CSGVKKCCS-NGCGHTCQVPKTLYKGVPLKPRKELRFTELQSGQLEVKWSSKFNISIEPV 192
Query: 129 L-TVHWKRLGSAMPEDRMS-----VLPSRSLQLSDVRLEDAGEY---VCEAENAVGKISA 179
+ V + P + + V + ++ + + Y V A N G
Sbjct: 193 IYVVQRRWNYGIHPSEDDATHWQTVAQTTDERVQLTDIRPSRWYQFRVA-AVNVHGTRGF 251
Query: 180 SA---TLTVQMAPIVRERPSDLRLEVGRDAVFLCG---IEGSPPPST---------FWML 224
+A P P++LRL I P FW
Sbjct: 252 TAPSKHFRSSKDPSAPPAPANLRLANSTVNSDGSVTVTIVWDLPEEPDIPVHHYKVFWSW 311
Query: 225 EGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAG-----SDLA 279
+ + P + + + T N + ++ + + ++ + G S
Sbjct: 312 MVSSKSLVPTKKK---RRKTTDGFQNSVILEKL-QPDCDYVVELQAITYWGQTRLKSAKV 367
Query: 280 RASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRGEGS----------------- 322
T + N ++ L + R + G+
Sbjct: 368 SLHFTSTHATNNKEQLVKTRKGGIQTQLPFQRRRPTRPLEVGAPFYQDGQLQVKVYWKKT 427
Query: 323 ---------VQWW----RGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGS 369
V+W+ R GS +T + ++L D++ + T P
Sbjct: 428 EDPTVNRYHVRWFPEACAHNRTTGSEASSGMTHENYIILQDLSFSCKYKVTVQPIRPKSH 487
Query: 370 ASWS---------ASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANG---LTLA 417
+ ++L+ +S S P + + +
Sbjct: 488 SKAEAVFFTTPPCSALKGKSHKPIGCLGEAGHVLSKVLAKPENLSASFIVQDVNITGHFS 547
Query: 418 WSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVGLT 477
W + G+QV ++ S + + +LTV NL
Sbjct: 548 WKMAKANLYQPMTGFQVT-WAEVTTESRQNSLPNSIISQSQILPSDHYVLTVPNLRPSTL 606
Query: 478 YTFLVRALNSHGLSAPSPLS 497
Y V+ L G + +
Sbjct: 607 YRLEVQVLTPGGEGPATIKT 626
Score = 53.4 bits (127), Expect = 3e-07
Identities = 23/142 (16%), Positives = 45/142 (31%), Gaps = 10/142 (7%)
Query: 628 PSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGV-----IRTYQIIVG 682
+ + P + L + + +KW + V R I
Sbjct: 147 HTCQVPKTLYKGVPLKPRKELRFTELQSGQLEVKWSSKFNISIEPVIYVVQRRWNYGIHP 206
Query: 683 GGNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSG---- 738
+++ + + LT++ Y +AA N GT ++ P+ +S
Sbjct: 207 SEDDATHWQTVAQTTDERVQLTDIRPSRWYQFRVAAVNVHGTRGFTAPSKHFRSSKDPSA 266
Query: 739 -PEPRLEDWASQSGRSRGDGTM 759
P P A+ + S G T+
Sbjct: 267 PPAPANLRLANSTVNSDGSVTV 288
>2ens_A Advanced glycosylation END product-specific receptor;
beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 96
Score = 86.7 bits (215), Expect = 1e-20
Identities = 19/98 (19%), Positives = 39/98 (39%), Gaps = 7/98 (7%)
Query: 89 STDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVL 148
S+ + L + ++ P+ V+ + C V +HW + G + +
Sbjct: 2 SSGSS--GLEEVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGV-----PLPLP 54
Query: 149 PSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQ 186
PS L L ++ +D G Y C A ++ S +++
Sbjct: 55 PSPVLILPEIGPQDQGTYSCVATHSSHGPQESRAVSIS 92
Score = 84.4 bits (209), Expect = 7e-20
Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 9/100 (9%)
Query: 1 ISLLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG 60
L + V+P+ VA G T L C P P P + W K+G P+ S L
Sbjct: 6 SGLEEVQLVVEPEGGAVAPGGTVTLTCEVP-AQPSPQIHWMKDGVPLPLPPSPVLI---- 60
Query: 61 TNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKP 100
+ + D G Y CV + + + + AV +++P
Sbjct: 61 ----LPEIGPQDQGTYSCVATHSSHGPQESRAVSISIIEP 96
Score = 71.3 bits (175), Expect = 3e-15
Identities = 14/87 (16%), Positives = 30/87 (34%), Gaps = 8/87 (9%)
Query: 293 PPVILFGPANQTLPLRSEARLRCQVRGEG--SVQWWRGEREVGSGPRVNVTGDGSLVLTD 350
++ P + L C+V + + W + G + + L+L +
Sbjct: 10 EVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKD------GVPLPLPPSPVLILPE 63
Query: 351 VTKEDSGEYTCVVKSPHGSASWSASLR 377
+ +D G Y+CV S ++
Sbjct: 64 IGPQDQGTYSCVATHSSHGPQESRAVS 90
Score = 52.0 bits (125), Expect = 1e-08
Identities = 13/118 (11%), Positives = 33/118 (27%), Gaps = 28/118 (23%)
Query: 179 ASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVD 238
S+ + + P + G C + P P WM +G
Sbjct: 1 GSSGSSGLEEVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVP---------- 50
Query: 239 NIQAEITSDGMNLLKIQNVSR------TAAPLIILCLGVNAAGSDLARASLTVSGPDP 290
+ +L + + + C+ +++ ++++S +P
Sbjct: 51 -----LPLPPSPVLILPEIGPQDQGTYS-------CVATHSSHGPQESRAVSISIIEP 96
>1uen_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold,
fibronectin type III, NG-CAM related cell adhesion
molecule, structural genomics; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 125
Score = 87.5 bits (217), Expect = 1e-20
Identities = 24/121 (19%), Positives = 45/121 (37%), Gaps = 8/121 (6%)
Query: 629 SNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIV------- 681
S+ + + E P P ++N+T + W P P+ + G ++ Y+I
Sbjct: 2 SSGSSGHSGEDLPMVAPGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSS 61
Query: 682 -GGGNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGPE 740
+ +T S +L L Y++++ N G GP S + + G
Sbjct: 62 KRNRRHIEKKILTFQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPASPDRVFNTPEGSG 121
Query: 741 P 741
P
Sbjct: 122 P 122
Score = 43.6 bits (103), Expect = 3e-05
Identities = 18/100 (18%), Positives = 30/100 (30%), Gaps = 8/100 (8%)
Query: 399 GPPTKPTLVNQTANGLTLAWS---RNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATW 455
P + + + W + G L GY++ Y + SS +
Sbjct: 16 VAPGNVRVNVVNSTLAEVHWDPVPLKSIRGH--LQGYRI-YYWKTQSSSKRNRRHIEKKI 72
Query: 456 VRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSP 495
+ + + L YT VR +N G SP
Sbjct: 73 LTFQGSKTH--GMLPGLEPFSHYTLNVRVVNGKGEGPASP 110
Score = 32.8 bits (75), Expect = 0.18
Identities = 22/103 (21%), Positives = 35/103 (33%), Gaps = 13/103 (12%)
Query: 551 EVKPMTSTSVKLTWEILNTDYIEGV----YIY-------SRGLDPPASVAMLTVLHAGEA 599
V + ST ++ W+ + I G IY S+ +LT G
Sbjct: 22 RVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSSKRNRRHIEKKILTF--QGSK 79
Query: 600 SGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVRTLECEPS 642
+ ++ GL +S Y + G +G S R T E
Sbjct: 80 THGMLPGLEPFSHYTLNVRVVNGKGEGPASPDRVFNTPEGSGP 122
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle
isozymes; IG fold, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.1.1.4
Length = 114
Score = 87.0 bits (216), Expect = 2e-20
Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 7/97 (7%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV---DGTNL 63
+ P+ Q+V AG++ L G T W K I + S+ +++ +G+ L
Sbjct: 9 QIIQFPEDQKVRAGESVELFG-KVTGTQPITCTWMKFRKQI--QESEHMKVENSENGSKL 65
Query: 64 AIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKP 100
I +R+ G Y +V+N G+R++ L V+ KP
Sbjct: 66 TILAARQEHCGCYTLLVENKLGSRQAQ-VNLTVVDKP 101
Score = 78.1 bits (193), Expect = 2e-17
Identities = 28/94 (29%), Positives = 36/94 (38%), Gaps = 4/94 (4%)
Query: 100 PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED-RMSVLPSR---SLQL 155
P II+ P+D V A + V G +T W + + E M V S L +
Sbjct: 8 PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTI 67
Query: 156 SDVRLEDAGEYVCEAENAVGKISASATLTVQMAP 189
R E G Y EN +G A LTV P
Sbjct: 68 LAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKP 101
Score = 75.8 bits (187), Expect = 1e-16
Identities = 23/118 (19%), Positives = 42/118 (35%), Gaps = 17/118 (14%)
Query: 293 PPVILFGPANQTLPLRSEARLRCQVRGEG--SVQWWRGEREVGSGPRVNVTGDG---SLV 347
P I+ P +Q + L +V G + W + +++ + V L
Sbjct: 7 GPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLT 66
Query: 348 LTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPT 405
+ +E G YT +V++ GS +L P+P G P+ P+
Sbjct: 67 ILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDK----------PDPPA--GTPSGPS 112
Score = 63.9 bits (156), Expect = 2e-12
Identities = 25/117 (21%), Positives = 44/117 (37%), Gaps = 10/117 (8%)
Query: 186 QMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEIT 245
P + + P D ++ G + G+ P + WM + I + + ++
Sbjct: 5 SSGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQ--IQESEHM-KVE---N 58
Query: 246 SDGMNLLKIQNVSRT-AAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPA 301
S+ + L I + L N GS A+ +LTV P+PP GP+
Sbjct: 59 SENGSKLTILAARQEHCG--CYTLLVENKLGSRQAQVNLTVVDK-PDPPAGTPSGPS 112
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A
2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Length = 100
Score = 86.2 bits (214), Expect = 2e-20
Identities = 20/95 (21%), Positives = 38/95 (40%), Gaps = 6/95 (6%)
Query: 98 VKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED---RMSVLPS---R 151
+ P I P D ++ ++ C+ G+ V W G + R + +
Sbjct: 4 IPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLT 63
Query: 152 SLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQ 186
+L + DV+ +D G Y N G SA+ + ++
Sbjct: 64 TLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHIR 98
Score = 81.2 bits (201), Expect = 1e-18
Identities = 22/93 (23%), Positives = 34/93 (36%), Gaps = 5/93 (5%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV---DGTNL 63
+ P + G + C G P P + W G I + R + D T L
Sbjct: 7 KIEALPSDISIDEGKVLTVAC-AFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTL 65
Query: 64 AIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRV 96
I D +K D G Y + N G+ +S + +
Sbjct: 66 IIMDVQKQDGGLYTLSLGNEFGS-DSATVNIHI 97
Score = 78.5 bits (194), Expect = 1e-17
Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 7/98 (7%)
Query: 290 PNPPPVILFGPANQTLPLRSEARLRCQVRG--EGSVQWWRGEREVGSGP--RVNVTGDG- 344
P PP I P++ ++ + C G V W G R++ S R ++
Sbjct: 2 PGIPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDD 61
Query: 345 --SLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFES 380
+L++ DV K+D G YT + + GS S + ++ S
Sbjct: 62 LTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHIRS 99
Score = 55.8 bits (135), Expect = 9e-10
Identities = 23/105 (21%), Positives = 40/105 (38%), Gaps = 17/105 (16%)
Query: 187 MAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITS 246
+ P + PSD+ ++ G+ C G P P W G + I+ ++ E +
Sbjct: 4 IPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRK--IHSQEQGR-FHIE-NT 59
Query: 247 DGMNLLKIQNVSR------TAAPLIILCLGVNAAGSDLARASLTV 285
D + L I +V + T N GSD A ++ +
Sbjct: 60 DDLTTLIIMDVQKQDGGLYT-------LSLGNEFGSDSATVNIHI 97
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG
superfamily, rossmann fold, metal mediated protein
interf immune system; HET: NAG; 3.30A {Homo sapiens}
SCOP: b.1.1.3 b.1.1.4
Length = 291
Score = 91.5 bits (226), Expect = 2e-20
Identities = 51/308 (16%), Positives = 87/308 (28%), Gaps = 38/308 (12%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQ 66
+ V P + G + L+ C P L + K L L +
Sbjct: 1 QTSVSPSKVILPRGGSVLVTCSTSCDQP-KLLGIE------TPLPKKELLLPGNNRKVYE 53
Query: 67 DSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGG- 125
S +D + C G + + + P + + C V G
Sbjct: 54 LSNVQEDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGG 113
Query: 126 --DAVLTVHWKRLGSAMP-EDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVG------- 175
A LTV R + E + + + R + C E +
Sbjct: 114 APRANLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELF 173
Query: 176 -KISASATLTVQMAPIVRER-PSDLRLEVGRDAVFLCGIEGSPPPS--TFWMLEGNRSLI 231
SA L + P + S LEV +C ++G P S + G++ L
Sbjct: 174 ENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRL- 232
Query: 232 YPGDRVDNIQAEITSDGMNLLKIQNVSRTAAP---LIILCLGVNAAGSDLARASLTVSGP 288
+T + +VS TA + C + S ++T+
Sbjct: 233 ---------NPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTI--- 280
Query: 289 DPNPPPVI 296
P P +
Sbjct: 281 YSFPAPNV 288
Score = 74.9 bits (183), Expect = 1e-14
Identities = 54/298 (18%), Positives = 96/298 (32%), Gaps = 32/298 (10%)
Query: 106 PKDTTVSASSIIVFECSVGGDAVLTVHWKR-LGSAMPEDRMSVLPSRSLQLSDVRLEDAG 164
P + ++ CS D + + L + +LS+V+ +
Sbjct: 6 PSKVILPRGGSVLVTCSTSCDQPKLLGIETPLPKKELLL--PGNNRKVYELSNVQ--EDS 61
Query: 165 EYVCEAENAVGKISASATLTVQMAP-IVRERPSDLRLEVGRDAVFLCGIEGSPPPS--TF 221
+ +C + G+ +A LTV P V P VG++ C +EG P + T
Sbjct: 62 QPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTV 121
Query: 222 WMLEGNRSLIY------PGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAG 275
+L G + L P + + G N L + G+
Sbjct: 122 VLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANF-------SCRTELDLRPQGLELFE 174
Query: 276 SDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG-----EGSVQWWRGER 330
+ A L PP + + + L + ++ + C + G E V G++
Sbjct: 175 NTSAPYQLQTFVLPATPPQL----VSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQ 230
Query: 331 EVGSGPRVNVTGDGSLVLTDVTKEDSG--EYTCVVKSPHGSASWSASLRFESPTNPNI 386
+ + VT ED G TC V + S ++ S PN+
Sbjct: 231 RLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNV 288
Score = 63.0 bits (152), Expect = 8e-11
Identities = 39/218 (17%), Positives = 62/218 (28%), Gaps = 26/218 (11%)
Query: 191 VRERPSDLRLEVGRDAVFLCGIEGSPPPSTFW-MLEGNRSLIYPGDRVDNIQAEITSDGM 249
PS + L G + C P + L+ PG+
Sbjct: 2 TSVSPSKVILPRGGSVLVTCSTSCDQPKLLGIETPLPKKELLLPGNNR------------ 49
Query: 250 NLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRS 309
+ ++ NV + P+ C G A+ LTV P + P P+
Sbjct: 50 KVYELSNVQEDSQPM---CYSNCPDGQSTAKTFLTV----YWTPERVELAPLPSWQPVGK 102
Query: 310 EARLRCQVRG-----EGSVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVK 364
LRCQV G +V RGE+E+ P V + + + ++C +
Sbjct: 103 NLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTE 162
Query: 365 SPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPT 402
+P F P P
Sbjct: 163 LDLRPQGLELFENTSAPYQLQT-FVLPATPPQLVSPRV 199
Score = 63.0 bits (152), Expect = 1e-10
Identities = 26/200 (13%), Positives = 45/200 (22%), Gaps = 18/200 (9%)
Query: 6 EEFRVQPKSQRVAAGDTALLECGPPRGHPEP--TLVWKKNGHPIDFENSKRLRLVDGTNL 63
E + P G L C G P T+V + + E +
Sbjct: 87 ERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAE--VTT 144
Query: 64 AIQDSRKTDDGRYQCVVKNVAGT-------RESTDAVLRVLVKPYIIRG-PKDTTVSASS 115
+ R + C + S L+ V P + +
Sbjct: 145 TVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDT 204
Query: 116 IIVFECSVGGD---AVLTVHWKRLGSAMPED---RMSVLPSRSLQLSDVRLEDAGEYVCE 169
CS+ G + VH + +++ E C
Sbjct: 205 QGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCA 264
Query: 170 AENAVGKISASATLTVQMAP 189
T+T+ P
Sbjct: 265 VILGNQSQETLQTVTIYSFP 284
>2dlh_A Receptor-type tyrosine-protein phosphatase delta; protein-tyrosine
phosphatase delta, R-PTP-delta, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 121
Score = 85.5 bits (212), Expect = 6e-20
Identities = 29/119 (24%), Positives = 48/119 (40%), Gaps = 4/119 (3%)
Query: 625 DGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQII--VG 682
S +T E PS P+ +L++T++L++WK P NG I+ Y++ +
Sbjct: 2 SSGSSGPVLTQTSEQAPSSAPRDVQARMLSSTTILVQWKEPE--EPNGQIQGYRVYYTMD 59
Query: 683 GGNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGPEP 741
+ A + + NL YSV + A G GP S + +G P
Sbjct: 60 PTQHVNNWMKHNVADSQITTIGNLVPQKTYSVKVLAFTSIGDGPLSSDIQVITQTGSGP 118
Score = 37.4 bits (87), Expect = 0.004
Identities = 20/108 (18%), Positives = 31/108 (28%), Gaps = 19/108 (17%)
Query: 399 GPPTKPTLVNQTANGLTLAWS---RNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATW 455
P ++ + + W N + GY+V P
Sbjct: 20 SAPRDVQARMLSSTTILVQWKEPEEPNGQ----IQGYRVYYTMDP-------TQHVNNWM 68
Query: 456 VRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLR 503
+ T+ NL TY+ V A S G PLS +I +
Sbjct: 69 KHNVADSQI--TTIGNLVPQKTYSVKVLAFTSIG---DGPLSSDIQVI 111
Score = 33.5 bits (77), Expect = 0.095
Identities = 14/98 (14%), Positives = 31/98 (31%), Gaps = 13/98 (13%)
Query: 551 EVKPMTSTSVKLTWE-------ILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFL 603
+ + ++ST++ + W+ + Y VY + + ++
Sbjct: 26 QARMLSSTTILVQWKEPEEPNGQI-QGYR--VYYTMDPTQHVNNW---MKHNVADSQITT 79
Query: 604 VTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVRTLECEP 641
+ L Y ++ F DG S+ V T
Sbjct: 80 IGNLVPQKTYSVKVLAFTSIGDGPLSSDIQVITQTGSG 117
>2ee2_A Contactin-1; neural cell surface protein F3, glycoprotein GP135,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 119
Score = 84.7 bits (210), Expect = 9e-20
Identities = 22/108 (20%), Positives = 43/108 (39%), Gaps = 6/108 (5%)
Query: 625 DGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQII--VG 682
S + + + + PS P +L+++ + + W+ ++ +YQI
Sbjct: 2 SSGSSGVAVINSAQDAPSEAPTEVGVKVLSSSEISVHWEHVL----EKIVESYQIRYWAA 57
Query: 683 GGNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRP 730
A + V++ + L NL +Y + + A N AG GP S
Sbjct: 58 HDKEEAANRVQVTSQEYSARLENLLPDTQYFIEVGACNSAGCGPPSDM 105
Score = 38.1 bits (89), Expect = 0.002
Identities = 16/92 (17%), Positives = 34/92 (36%), Gaps = 3/92 (3%)
Query: 551 EVKPMTSTSVKLTWEILNTDYIEGVYI-YSRGLDPPASVAMLTVLHAGEASGFLVTGLAH 609
VK ++S+ + + WE + +E I Y D + + V + + L
Sbjct: 26 GVKVLSSSEISVHWEHVLEKIVESYQIRYWAAHDKEEAANRVQV--TSQEYSARLENLLP 83
Query: 610 YSRYEFFLVPFFGSVDGKPSNLRAVRTLECEP 641
++Y + + G PS++ T +
Sbjct: 84 DTQYFIEVGACNSAGCGPPSDMIEAFTKKASG 115
Score = 37.3 bits (87), Expect = 0.003
Identities = 19/97 (19%), Positives = 36/97 (37%), Gaps = 12/97 (12%)
Query: 399 GPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRV 458
PT+ + +++ +++ W + + YQ+ ++ + A V+V
Sbjct: 20 EAPTEVGVKVLSSSEISVHW---EHVLEKIVESYQIRYWAAHDKEEA-------ANRVQV 69
Query: 459 ATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSP 495
+ S + NL Y V A NS G PS
Sbjct: 70 TSQEYS--ARLENLLPDTQYFIEVGACNSAGCGPPSD 104
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 86.6 bits (214), Expect = 1e-19
Identities = 30/179 (16%), Positives = 52/179 (29%), Gaps = 22/179 (12%)
Query: 17 VAAGDTALLEC-GPPRGHPEPTLVWKKNGHPI--------DFENSKRLRLVDGTNLAIQD 67
A G L + W++ + F S ++ +L I++
Sbjct: 8 GALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKN 67
Query: 68 SRKTDDGRYQCVVKNVAGTRESTDAV-LRVLVKPYIIRGPKDTTVSASSIIVFECSVGGD 126
+ D G Y V + GTR A+ LR+L K S C V
Sbjct: 68 LTRDDSGTYNVTVYSTNGTRILNKALDLRILEMV-----SKPMIYWECSNATLTCEVLEG 122
Query: 127 AVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTV 185
+ + + + R +S + C+A N V + S +
Sbjct: 123 TDVELKLYQGKEHLRS-------LRQKTMSYQWTNLRAPFKCKAVNRVSQESEMEVVNC 174
Score = 63.1 bits (153), Expect = 2e-11
Identities = 22/176 (12%), Positives = 49/176 (27%), Gaps = 34/176 (19%)
Query: 125 GDAVLTVHWKR-----------LGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENA 173
D + V W+R + + +L + L++ ++ +D+G Y +
Sbjct: 24 TDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYST 83
Query: 174 VGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYP 233
G + L +++ +V + +A C +
Sbjct: 84 NGTRILNKALDLRILEMVSKPMIYWE---CSNATLTCEVLEGTDVELKLYQGKE------ 134
Query: 234 GDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPD 289
+ S + Q + A C VN + V+ P+
Sbjct: 135 ---------HLRSLRQKTMSYQWTNLRA---PFKCKAVNRVSQE--SEMEVVNCPE 176
Score = 57.7 bits (139), Expect = 1e-09
Identities = 23/119 (19%), Positives = 41/119 (34%), Gaps = 20/119 (16%)
Query: 322 SVQWWRGEREVGS----------GPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSAS 371
V+W RG V + +G L + ++T++DSG Y V S +G+
Sbjct: 29 EVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNGTRI 88
Query: 372 WSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANG--LTLAWSRNNQIGSSS 428
+ +L +P Y + TL + G + L + + S
Sbjct: 89 LNKALDLRILE-------MVSKPMIYWE-CSNATLTCEVLEGTDVELKLYQGKEHLRSL 139
Score = 57.7 bits (139), Expect = 1e-09
Identities = 21/187 (11%), Positives = 52/187 (27%), Gaps = 34/187 (18%)
Query: 202 VGRDAVFLCGI--EGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNL-LKIQNVS 258
+G W + +++ N LKI+N++
Sbjct: 10 LGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLT 69
Query: 259 R------TAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEAR 312
R + G+ + +L + + P+I + +N TL
Sbjct: 70 RDDSGTYN-------VTVYSTNGTRILNKALDLRILEMVSKPMIYWECSNATL------- 115
Query: 313 LRCQVRG--EGSVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSA 370
C+V + ++ ++G+ + S + ++ + C +
Sbjct: 116 -TCEVLEGTDVELKLYQGKEHLRSLRQ--------KTMSYQWTNLRAPFKCKAVNRVSQE 166
Query: 371 SWSASLR 377
S +
Sbjct: 167 SEMEVVN 173
>2v9t_A Roundabout homolog 1; structural protein-receptor complex,
developmental protein, domain, roundabout, chemotaxis,
LRR domain; 1.70A {Homo sapiens}
Length = 117
Score = 84.5 bits (209), Expect = 1e-19
Identities = 30/104 (28%), Positives = 41/104 (39%), Gaps = 9/104 (8%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPI----DFENSKRLRLVDGT- 61
P V+ G+ A L C G P PT+ W K G + D S R+ L G+
Sbjct: 11 RIVEHPSDLIVSKGEPATLNCKA-EGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSL 69
Query: 62 ---NLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYI 102
+ + D+G Y CV +N G S DA L V +
Sbjct: 70 FFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAAAAHH 113
Score = 81.8 bits (202), Expect = 1e-18
Identities = 30/110 (27%), Positives = 42/110 (38%), Gaps = 12/110 (10%)
Query: 92 AVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED------RM 145
++ + P I+ P D VS C G T+ W + G + D
Sbjct: 2 SLRQEDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHR 61
Query: 146 SVLPSRSLQLSDV-----RLEDAGEYVCEAENAVGKI-SASATLTVQMAP 189
+LPS SL + D G YVC A N +G+ S A+L V A
Sbjct: 62 MLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAAAA 111
Score = 64.1 bits (156), Expect = 2e-12
Identities = 25/102 (24%), Positives = 43/102 (42%), Gaps = 13/102 (12%)
Query: 293 PPVILFGPANQTLPLRSEARLRCQVRGEG--SVQWWRGEREVGSGP-----RVNVTGDGS 345
PP I+ P++ + A L C+ G +++W++G V + + GS
Sbjct: 9 PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGS 68
Query: 346 LVLTDV-----TKEDSGEYTCVVKSPHGSA-SWSASLRFESP 381
L + ++ D G Y CV ++ G A S ASL +
Sbjct: 69 LFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAAA 110
Score = 56.4 bits (136), Expect = 8e-10
Identities = 27/114 (23%), Positives = 40/114 (35%), Gaps = 10/114 (8%)
Query: 181 ATLT-VQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDN 239
+L P + E PSDL + G A C EG P P+ W G R D +
Sbjct: 1 GSLRQEDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSH 60
Query: 240 IQAEITSDGMNLLKIQNVSRTAAPL----IILCLGVNAAGSDLAR-ASLTVSGP 288
+ G L + + +C+ N G ++ ASL V+
Sbjct: 61 RM--LLPSG--SLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAAA 110
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein,
cell membrane, cytoplasm, cytoskeleton, disease
mutation, immunoglobulin domain; NMR {Homo sapiens}
Length = 100
Score = 82.8 bits (205), Expect = 3e-19
Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 6/94 (6%)
Query: 293 PPVILFGPANQTLPLRSEARLRCQVRG--EGSVQWWRGEREVGSGPRVNVT----GDGSL 346
PP + P N ++ R+ +V G V W+ R V S + G SL
Sbjct: 5 PPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSL 64
Query: 347 VLTDVTKEDSGEYTCVVKSPHGSASWSASLRFES 380
+ V D+G Y CV K+ G A+++ L +
Sbjct: 65 IFEVVRASDAGAYACVAKNRAGEATFTVQLDVLA 98
Score = 80.8 bits (200), Expect = 1e-18
Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 8/97 (8%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV----DGTN 62
F P++ + G ++ G P P + W NG + ++ +++ +
Sbjct: 7 RFIQVPENMSIDEGRFCRMDF-KVSGLPAPDVSWYLNGRTV--QSDDLHKMIVSEKGLHS 63
Query: 63 LAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVK 99
L + R +D G Y CV KN AG T L VL K
Sbjct: 64 LIFEVVRASDAGAYACVAKNRAGEATFT-VQLDVLAK 99
Score = 80.1 bits (198), Expect = 3e-18
Identities = 25/92 (27%), Positives = 37/92 (40%), Gaps = 5/92 (5%)
Query: 100 PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED---RMSVLPS--RSLQ 154
P I+ P++ ++ + V G V W G + D +M V SL
Sbjct: 6 PRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLI 65
Query: 155 LSDVRLEDAGEYVCEAENAVGKISASATLTVQ 186
VR DAG Y C A+N G+ + + L V
Sbjct: 66 FEVVRASDAGAYACVAKNRAGEATFTVQLDVL 97
Score = 56.9 bits (138), Expect = 4e-10
Identities = 23/103 (22%), Positives = 37/103 (35%), Gaps = 8/103 (7%)
Query: 188 APIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSD 247
P + P ++ ++ GR + G P P W L G + D I +E
Sbjct: 5 PPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRT--VQSDDLHKMIVSE---K 59
Query: 248 GMNLLKIQNVSRT-AAPLIILCLGVNAAGSDLARASLTVSGPD 289
G++ L + V + A C+ N AG L V +
Sbjct: 60 GLHSLIFEVVRASDAG--AYACVAKNRAGEATFTVQLDVLAKE 100
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 115
Score = 83.2 bits (206), Expect = 3e-19
Identities = 30/116 (25%), Positives = 43/116 (37%), Gaps = 12/116 (10%)
Query: 89 STDAVLRVLVK-PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED---R 144
S+ + V + +II +D V S F C + VHW + + +
Sbjct: 2 SSGSSGLVQGRRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNE 61
Query: 145 MSVLP--SRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAP--IVRERPS 196
+ P L L + L+D+G EA G ASA L V P R PS
Sbjct: 62 IDAQPGGYHVLTLRQLALKDSGTIYFEA----GDQRASAALRVTEKPSVFSRSGPS 113
Score = 74.7 bits (184), Expect = 3e-16
Identities = 25/121 (20%), Positives = 42/121 (34%), Gaps = 17/121 (14%)
Query: 281 ASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRGE--GSVQWWRGEREVGSGPRV 338
+S V G I+ + + S A RC++ V W+ + + +
Sbjct: 5 SSGLVQGR----RVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELN 60
Query: 339 NVT----GDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEP 394
+ G L L + +DSG G SA+LR P++ F R+
Sbjct: 61 EIDAQPGGYHVLTLRQLALKDSGTIYFEA----GDQRASAALRVTEK--PSV-FSRSGPS 113
Query: 395 S 395
S
Sbjct: 114 S 114
Score = 70.1 bits (172), Expect = 1e-14
Identities = 18/104 (17%), Positives = 28/104 (26%), Gaps = 10/104 (9%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN--LA 64
+ V G +A C + W + P+ + G L
Sbjct: 15 HIIEDLEDVDVQEGSSATFRCRI-SPANYEPVHWFLDKTPLHANELNEIDAQPGGYHVLT 73
Query: 65 IQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYII--RGP 106
++ D G + A LRV KP + GP
Sbjct: 74 LRQLALKDSGTIYFEAGDQ-----RASAALRVTEKPSVFSRSGP 112
Score = 56.2 bits (136), Expect = 9e-10
Identities = 22/123 (17%), Positives = 46/123 (37%), Gaps = 17/123 (13%)
Query: 178 SASATLTVQ-MAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDR 236
S+ ++ VQ + E D+ ++ G A F C I + W L+ ++ +
Sbjct: 2 SSGSSGLVQGRRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKT--PLHANEL 59
Query: 237 VDNIQAEITSDGMNLLKIQNVSRT-AAPLIILCLGVNAAGSDLARASLTVSGPDP----N 291
+ + G ++L ++ ++ + I AG A A+L V+ +
Sbjct: 60 N---EIDAQPGGYHVLTLRQLALKDSG--TIYF----EAGDQRASAALRVTEKPSVFSRS 110
Query: 292 PPP 294
P
Sbjct: 111 GPS 113
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding,
disease MU ectodermal dysplasia, glycoprotein,
heparin-binding, immuno domain, kinase; 1.96A {Homo
sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Length = 100
Score = 82.5 bits (204), Expect = 3e-19
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 4/94 (4%)
Query: 6 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN--L 63
+++ + V A +T C P G+P PT+ W KNG E+ V + L
Sbjct: 9 NTEKMEKRLHAVPAANTVKFRC-PAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSL 67
Query: 64 AIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVL 97
++ +D G Y CVV+N G+ T L V+
Sbjct: 68 IMESVVPSDKGNYTCVVENEYGSINHT-YHLDVV 100
Score = 77.9 bits (192), Expect = 2e-17
Identities = 27/95 (28%), Positives = 39/95 (41%), Gaps = 9/95 (9%)
Query: 100 PYIIRG----PKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAM-PEDRMSVLPSR--- 151
PY + V A++ + F C GG+ + T+ W + G E R+ R
Sbjct: 5 PYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQH 64
Query: 152 -SLQLSDVRLEDAGEYVCEAENAVGKISASATLTV 185
SL + V D G Y C EN G I+ + L V
Sbjct: 65 WSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 99
Score = 72.5 bits (178), Expect = 1e-15
Identities = 20/84 (23%), Positives = 36/84 (42%), Gaps = 6/84 (7%)
Query: 300 PANQTLPLRSEARLRCQVRG--EGSVQWWRGEREVGSGPRVNV----TGDGSLVLTDVTK 353
+P + + RC G +++W + +E R+ SL++ V
Sbjct: 15 KRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVP 74
Query: 354 EDSGEYTCVVKSPHGSASWSASLR 377
D G YTCVV++ +GS + + L
Sbjct: 75 SDKGNYTCVVENEYGSINHTYHLD 98
Score = 44.4 bits (105), Expect = 8e-06
Identities = 19/110 (17%), Positives = 32/110 (29%), Gaps = 22/110 (20%)
Query: 186 QMAP----IVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQ 241
+ AP + + F C G+P P+ W+ G R+ +
Sbjct: 2 KRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGK--EFKQEHRIGGYK 59
Query: 242 AEITSDGMNLLKIQNVSR------TAAPLIILCLGVNAAGSDLARASLTV 285
+ L +++V T C+ N GS L V
Sbjct: 60 VR---NQHWSLIMESVVPSDKGNYT-------CVVENEYGSINHTYHLDV 99
>2gee_A Hypothetical protein; fibronectin, EIIIB, cancer,
neovascularization, cell adhesion, protein binding,
oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A
Length = 203
Score = 86.0 bits (213), Expect = 4e-19
Identities = 34/176 (19%), Positives = 61/176 (34%), Gaps = 10/176 (5%)
Query: 551 EVKPMTSTSVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHY 610
+T +S+ L W LN+ I G I + V + VTGL
Sbjct: 30 SFVDITDSSIGLRWTPLNSSTIIGYRITVVAAGEGIPIFEDFV--DSSVGYYTVTGLEPG 87
Query: 611 SRYEFFLVPFFGSVDGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTH 670
Y+ + + P+ L +T L + ++ + W PPP
Sbjct: 88 IDYDISVYTVKNGGESTPTTLTQ-QT---AVPPPTDLR-FTNIGPDTMRVTWAPPPSIDL 142
Query: 671 NGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGP 726
+ Y + + + +++S S ++LTNL G Y VS+++
Sbjct: 143 TNFLVRYSPVKNEEDVA---ELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHEST 195
Score = 64.1 bits (156), Expect = 1e-11
Identities = 34/237 (14%), Positives = 75/237 (31%), Gaps = 57/237 (24%)
Query: 398 PGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVR 457
PT + V+ T + + L W+ + SS+++GY++ +G+
Sbjct: 23 VPQPTDLSFVDITDSSIGLRWTP---LNSSTIIGYRIT-VV-------AAGEGIPIFEDF 71
Query: 458 VATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKG 517
V ++V TVT L G+ Y V + + G S P+
Sbjct: 72 VDSSVGY--YTVTGLEPGIDYDISVYTVKNGGESTPT----------------------- 106
Query: 518 IFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPMTSTSVKLTWEILNTDYIEGVYI 577
++ L+ + ++++TW + + +
Sbjct: 107 --------TLTQQTAVPPPTDLR-----------FTNIGPDTMRVTWAPPPSIDLTNFLV 147
Query: 578 YSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLRAV 634
+ VA L++ + + ++T L + Y + + + P R
Sbjct: 148 RYSPVKNEEDVAELSI--SPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLRGRQK 202
Score = 52.1 bits (125), Expect = 1e-07
Identities = 23/109 (21%), Positives = 38/109 (34%), Gaps = 6/109 (5%)
Query: 633 AVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQI-IVGGGNNSALIN 691
R E L+ V + +S+ L+W P + I Y+I +V G +
Sbjct: 15 VPRGSHMEVPQPTDLS-FVDITDSSIGLRWTPLN----SSTIIGYRITVVAAGEGIPIFE 69
Query: 692 MTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGPE 740
V +S +T L GI Y +S+ G + + P
Sbjct: 70 DFVDSSVGYYTVTGLEPGIDYDISVYTVKNGGESTPTTLTQQTAVPPPT 118
Score = 50.6 bits (121), Expect = 4e-07
Identities = 19/100 (19%), Positives = 34/100 (34%), Gaps = 13/100 (13%)
Query: 395 STYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATAT 454
T PPT N + + + W+ S L + V SP +
Sbjct: 111 QTAVPPPTDLRFTNIGPDTMRVTWAP---PPSIDLTNFLVRY--------SPVKNEEDVA 159
Query: 455 WVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPS 494
+ ++ + + + +TNL G Y V ++ S P
Sbjct: 160 ELSISPSDNA--VVLTNLLPGTEYVVSVSSVYEQHESTPL 197
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin,
actin-associated scaffold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 110
Score = 82.8 bits (205), Expect = 4e-19
Identities = 28/97 (28%), Positives = 41/97 (42%), Gaps = 5/97 (5%)
Query: 98 VKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED---RMSVLPS--RS 152
+P+ ++ P D TV + +C V G + W+ G + D +M V + S
Sbjct: 8 FRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHS 67
Query: 153 LQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAP 189
L + V DAG Y C A N G+ S S L V
Sbjct: 68 LIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKE 104
Score = 81.3 bits (201), Expect = 1e-18
Identities = 24/98 (24%), Positives = 39/98 (39%), Gaps = 6/98 (6%)
Query: 293 PPVILFGPANQTLPLRSEARLRCQVRG--EGSVQWWRGEREVGSGPRVNVT----GDGSL 346
P L P + T+ R+ C+V G + W + V + G SL
Sbjct: 9 RPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSL 68
Query: 347 VLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNP 384
++ VT D+G YTC+ + G S+S L + +
Sbjct: 69 IIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKESG 106
Score = 79.7 bits (197), Expect = 4e-18
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 4/96 (4%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN--LA 64
F P V G ++C G P P L W+ +G P+ +++ ++ + + L
Sbjct: 11 HFLQAPGDLTVQEGKLCRMDC-KVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLI 69
Query: 65 IQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKP 100
I+ D G Y C+ N AG + L V K
Sbjct: 70 IEPVTSRDAGIYTCIATNRAGQNSFS-LELVVAAKE 104
Score = 66.2 bits (162), Expect = 3e-13
Identities = 26/114 (22%), Positives = 47/114 (41%), Gaps = 8/114 (7%)
Query: 181 ATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNI 240
++ + P + P DL ++ G+ C + G P P W L+G + P
Sbjct: 2 SSGSSGFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKP--VRPDSA---H 56
Query: 241 QAEITSDGMNLLKIQNVSRT-AAPLIILCLGVNAAGSDLARASLTVSGPDPNPP 293
+ + +G++ L I+ V+ A I C+ N AG + L V+ + P
Sbjct: 57 KMLVRENGVHSLIIEPVTSRDAG--IYTCIATNRAGQNSFSLELVVAAKESGPS 108
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural
genomics, IG-fold I-SET, RGD motif, homophilic
adhesion, arterial smooth muscle cells; 0.96A {Homo
sapiens}
Length = 99
Score = 82.3 bits (204), Expect = 4e-19
Identities = 24/93 (25%), Positives = 37/93 (39%), Gaps = 6/93 (6%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN---L 63
F+V Q V G ++ +G P+P + W +N P+ + +R L
Sbjct: 7 TFKVSLMDQSVREGQDVIMSI-RVQGEPKPVVSWLRNRQPVR-PDQRRFAEEAEGGLCRL 64
Query: 64 AIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRV 96
I + + D G Y C N G R+ A L V
Sbjct: 65 RILAAERGDAGFYTCKAVNEYGARQCE-ARLEV 96
Score = 81.6 bits (202), Expect = 6e-19
Identities = 22/94 (23%), Positives = 32/94 (34%), Gaps = 5/94 (5%)
Query: 98 VKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED--RMSVLPS---RS 152
P D +V ++ V G+ V W R + D R +
Sbjct: 4 APPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCR 63
Query: 153 LQLSDVRLEDAGEYVCEAENAVGKISASATLTVQ 186
L++ DAG Y C+A N G A L V+
Sbjct: 64 LRILAAERGDAGFYTCKAVNEYGARQCEARLEVR 97
Score = 77.3 bits (191), Expect = 2e-17
Identities = 20/91 (21%), Positives = 35/91 (38%), Gaps = 6/91 (6%)
Query: 293 PPVILFGPANQTLPLRSEARLRCQVRG--EGSVQWWRGEREVGSGPR----VNVTGDGSL 346
PP +Q++ + + +V+G + V W R + V R G L
Sbjct: 5 PPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRL 64
Query: 347 VLTDVTKEDSGEYTCVVKSPHGSASWSASLR 377
+ + D+G YTC + +G+ A L
Sbjct: 65 RILAAERGDAGFYTCKAVNEYGARQCEARLE 95
Score = 64.2 bits (157), Expect = 9e-13
Identities = 25/108 (23%), Positives = 37/108 (34%), Gaps = 18/108 (16%)
Query: 186 QMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEIT 245
+ P + D + G+D + ++G P P W+ + P R AE
Sbjct: 3 KAPPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQP--VRPDQR---RFAEEA 57
Query: 246 SDGMNLLKIQNVSR------TAAPLIILCLGVNAAGSDLARASLTVSG 287
G+ L+I R T C VN G+ A L V G
Sbjct: 58 EGGLCRLRILAAERGDAGFYT-------CKAVNEYGARQCEARLEVRG 98
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET,
muscle protein; NMR {Caenorhabditis elegans} SCOP:
b.1.1.4 PDB: 1wiu_A
Length = 93
Score = 82.0 bits (203), Expect = 5e-19
Identities = 22/95 (23%), Positives = 37/95 (38%), Gaps = 9/95 (9%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV---DGTNLA 64
+ ++ AG T LE G P+PT W + L + T++
Sbjct: 5 ILTASRKIKIKAGFTHNLEV-DFIGAPDPTATWTVGDSGA--ALAPELLVDAKSSTTSIF 61
Query: 65 IQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVK 99
+++ D G Y+ VKN G E+ V+V+
Sbjct: 62 FPSAKRADSGNYKLKVKNELGEDEAI---FEVIVQ 93
Score = 78.1 bits (193), Expect = 1e-17
Identities = 19/93 (20%), Positives = 33/93 (35%), Gaps = 4/93 (4%)
Query: 98 VKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED-RMSVLP---SRSL 153
+KP I+ + + A E G T W S + V + S+
Sbjct: 1 LKPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSI 60
Query: 154 QLSDVRLEDAGEYVCEAENAVGKISASATLTVQ 186
+ D+G Y + +N +G+ A + VQ
Sbjct: 61 FFPSAKRADSGNYKLKVKNELGEDEAIFEVIVQ 93
Score = 73.9 bits (182), Expect = 3e-16
Identities = 17/90 (18%), Positives = 25/90 (27%), Gaps = 5/90 (5%)
Query: 293 PPVILFGPANQTLPLRSEARLRCQVRGEG--SVQWWRGEREVGSGPRVNVTGDG---SLV 347
P IL + L G + W G+ P + V S+
Sbjct: 2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIF 61
Query: 348 LTDVTKEDSGEYTCVVKSPHGSASWSASLR 377
+ DSG Y VK+ G +
Sbjct: 62 FPSAKRADSGNYKLKVKNELGEDEAIFEVI 91
Score = 53.1 bits (128), Expect = 5e-09
Identities = 12/105 (11%), Positives = 27/105 (25%), Gaps = 19/105 (18%)
Query: 187 MAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITS 246
+ P + ++++ G G+P P+ W + + + +
Sbjct: 1 LKPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDS--GAALAPEL-LVD---AK 54
Query: 247 DGMNLLKIQNVSR------TAAPLIILCLGVNAAGSDLARASLTV 285
+ + R N G D A + V
Sbjct: 55 SSTTSIFFPSAKRADSGNYK-------LKVKNELGEDEAIFEVIV 92
>3n1f_C Cell adhesion molecule-related/DOWN-regulated BY; binding sites,
calcium, cell adhesion molecules, cell cycle cell LINE,
conserved sequence; 1.60A {Homo sapiens} PDB: 3d1m_C
3n1q_C 3n1m_C 3n1g_C 3n1p_C
Length = 102
Score = 82.0 bits (203), Expect = 5e-19
Identities = 19/93 (20%), Positives = 34/93 (36%), Gaps = 3/93 (3%)
Query: 641 PSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQII---VGGGNNSALINMTVSAS 697
P P + ++ T ++LKW P +N I+ + I N+S V S
Sbjct: 4 PITGPHIAYTEAVSDTQIMLKWTYIPSSNNNTPIQGFYIYYRPTDSDNDSDYKRDVVEGS 63
Query: 698 TPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRP 730
++ +L Y + + N G +S
Sbjct: 64 KQWHMIGHLQPETSYDIKMQCFNEGGESEFSNV 96
Score = 44.7 bits (106), Expect = 8e-06
Identities = 15/93 (16%), Positives = 31/93 (33%), Gaps = 4/93 (4%)
Query: 548 ELTEVKPMTSTSVKLTWEILNTDYIEGV----YIYSRGLDPPASVAMLTVLHAGEASGFL 603
+ + ++ T + L W + + YIY R D + G +
Sbjct: 9 HIAYTEAVSDTQIMLKWTYIPSSNNNTPIQGFYIYYRPTDSDNDSDYKRDVVEGSKQWHM 68
Query: 604 VTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVRT 636
+ L + Y+ + F + + SN+ T
Sbjct: 69 IGHLQPETSYDIKMQCFNEGGESEFSNVMICET 101
Score = 40.0 bits (94), Expect = 3e-04
Identities = 17/109 (15%), Positives = 34/109 (31%), Gaps = 16/109 (14%)
Query: 398 PGPPTKPTLVNQTANGLTLAWS---RNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATAT 454
P + + L W+ +N + G+ + Y RP S + S
Sbjct: 5 ITGPHIAYTEAVSDTQIMLKWTYIPSSNNNTP--IQGFYI--YYRPTDSDNDS------D 54
Query: 455 WVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLR 503
+ R + +L +Y ++ N G S S+ ++
Sbjct: 55 YKRDVVEGSKQWHMIGHLQPETSYDIKMQCFNEGG---ESEFSNVMICE 100
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core
protein; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Length = 98
Score = 81.8 bits (202), Expect = 6e-19
Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 4/96 (4%)
Query: 94 LRVLVKPYII--RGPKDTTVSASSIIVFECSV-GGDAVLTVHWKRLGSAMPEDRMSVLPS 150
L KP ++ + +V + + F C+ T+ W RL + R ++ +
Sbjct: 3 LAAPSKPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSR-AMDFN 61
Query: 151 RSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQ 186
L + +V+ DAG YVC N +ATL VQ
Sbjct: 62 GILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHVQ 97
Score = 71.8 bits (176), Expect = 2e-15
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 5/88 (5%)
Query: 11 QPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRK 70
+ +SQ V G C P TLVW + + R +G L I++ +
Sbjct: 16 EQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKL---PSRAMDFNGI-LTIRNVQP 71
Query: 71 TDDGRYQCVVKNVAGTRESTDAVLRVLV 98
+D G Y C N+ + T A L V V
Sbjct: 72 SDAGTYVCTGSNMFAMDQGT-ATLHVQV 98
Score = 67.5 bits (165), Expect = 7e-14
Identities = 17/89 (19%), Positives = 35/89 (39%), Gaps = 5/89 (5%)
Query: 292 PPPVILFGPANQTLPLRSEARLRCQVRGEG---SVQWWRGEREVGSGPRVNVTGDGSLVL 348
P V + +Q++ ++ C + + ++ W R G P + +G L +
Sbjct: 9 PIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHN--GKLPSRAMDFNGILTI 66
Query: 349 TDVTKEDSGEYTCVVKSPHGSASWSASLR 377
+V D+G Y C + +A+L
Sbjct: 67 RNVQPSDAGTYVCTGSNMFAMDQGTATLH 95
Score = 51.3 bits (123), Expect = 3e-08
Identities = 28/108 (25%), Positives = 40/108 (37%), Gaps = 15/108 (13%)
Query: 181 ATLTVQMAP--IVRERPSDLRLEVGRDAVFLCGIE-GSPPPSTFWMLEGNRSLIYPGDRV 237
A L P + E + G D F+C + SP + W N L P +
Sbjct: 1 APLAAPSKPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKL--PSRAM 58
Query: 238 DNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTV 285
D +G+ L I+NV + A + C G N D A+L V
Sbjct: 59 D-------FNGI--LTIRNVQPSDAGTYV-CTGSNMFAMDQGTATLHV 96
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo
sapiens}
Length = 103
Score = 82.0 bits (203), Expect = 7e-19
Identities = 23/101 (22%), Positives = 38/101 (37%), Gaps = 6/101 (5%)
Query: 287 GP-DPNPPPVILFGPANQTLPLRSEARLRCQVRG--EGSVQWWRGEREVGSGPRVNVTGD 343
GP + P I + +P R V+ V+W+ E+ +++ T
Sbjct: 1 GPFTLDHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNT 60
Query: 344 G---SLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESP 381
+L + D +DSG Y V + G AS A+L
Sbjct: 61 SGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDVTGG 101
Score = 77.7 bits (192), Expect = 2e-17
Identities = 21/99 (21%), Positives = 34/99 (34%), Gaps = 4/99 (4%)
Query: 92 AVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED-RMSVLPS 150
+ P I + V F +V V W G + E ++ +
Sbjct: 1 GPFTLDHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNT 60
Query: 151 R---SLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQ 186
+L++ D +D+G Y N G+ S ATL V
Sbjct: 61 SGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDVT 99
Score = 77.3 bits (191), Expect = 2e-17
Identities = 22/98 (22%), Positives = 34/98 (34%), Gaps = 7/98 (7%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN---L 63
++ +S RV G + P + W NG + + S ++ + + L
Sbjct: 10 RITLRMRSHRVPCGQNTRFIL-NVQSKPTAEVKWYHNGVEL--QESSKIHYTNTSGVLTL 66
Query: 64 AIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPY 101
I D D G Y+ V N G A L V Y
Sbjct: 67 EILDCHTDDSGTYRAVCTNYKGEASDY-ATLDVTGGDY 103
Score = 62.3 bits (152), Expect = 4e-12
Identities = 21/109 (19%), Positives = 40/109 (36%), Gaps = 11/109 (10%)
Query: 183 LTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQA 242
T+ AP + R R+ G++ F+ ++ P W G + ++
Sbjct: 3 FTLDHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGV--ELQESSKI----- 55
Query: 243 EITSD-GMNLLKIQNVSRT-AAPLIILCLGVNAAGSDLARASLTVSGPD 289
T+ G+ L+I + + + N G A+L V+G D
Sbjct: 56 HYTNTSGVLTLEILDCHTDDSG--TYRAVCTNYKGEASDYATLDVTGGD 102
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein
1 (isoform 2); hydrolase, immunoglobulin domain,
nucleus, protease; 1.15A {Homo sapiens}
Length = 91
Score = 81.2 bits (201), Expect = 7e-19
Identities = 23/90 (25%), Positives = 36/90 (40%), Gaps = 9/90 (10%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQ 66
+ V+P SQ++ G T +L+C G P P W KN P+ E K +
Sbjct: 5 QICVEPTSQKLMPGSTLVLQCVAV-GSPIPHYQWFKNELPLTHETKKLYM--------VP 55
Query: 67 DSRKTDDGRYQCVVKNVAGTRESTDAVLRV 96
G Y C V N +++S + +
Sbjct: 56 YVDLEHQGTYWCHVYNDRDSQDSKKVEIII 85
Score = 78.9 bits (195), Expect = 5e-18
Identities = 15/87 (17%), Positives = 26/87 (29%), Gaps = 5/87 (5%)
Query: 99 KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDV 158
K I P + S +V +C G + W + + + + + V
Sbjct: 3 KLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHE-----TKKLYMVPYV 57
Query: 159 RLEDAGEYVCEAENAVGKISASATLTV 185
LE G Y C N + +
Sbjct: 58 DLEHQGTYWCHVYNDRDSQDSKKVEII 84
Score = 68.1 bits (167), Expect = 4e-14
Identities = 20/94 (21%), Positives = 31/94 (32%), Gaps = 9/94 (9%)
Query: 293 PPVILFGPANQTLPLRSEARLRCQVRGEG--SVQWWRGEREVGSGPRVNVTGDGSLVLTD 350
I P +Q L S L+C G QW++ E + + ++
Sbjct: 3 KLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETK------KLYMVPY 56
Query: 351 VTKEDSGEYTCVVKSPHGSA-SWSASLRFESPTN 383
V E G Y C V + S S + + N
Sbjct: 57 VDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNN 90
Score = 38.9 bits (91), Expect = 6e-04
Identities = 16/97 (16%), Positives = 25/97 (25%), Gaps = 16/97 (16%)
Query: 189 PIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDG 248
+ P+ +L G V C GSP P W +T +
Sbjct: 4 LQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNEL---------------PLTHET 48
Query: 249 MNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTV 285
L + V C N S ++ +
Sbjct: 49 KKLYMVPYVDLEHQG-TYWCHVYNDRDSQDSKKVEII 84
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet,
STRU genomics, berkeley structural genomics center,
BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Length = 137
Score = 82.4 bits (203), Expect = 1e-18
Identities = 17/118 (14%), Positives = 31/118 (26%), Gaps = 17/118 (14%)
Query: 89 STDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED----- 143
S+ V R ++ P + C G V + W G +
Sbjct: 11 SSGLVPRGSHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLW 70
Query: 144 ------------RMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAP 189
+ ++ + + ED G Y C A N + + V+
Sbjct: 71 DGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRVKWVR 128
Score = 75.1 bits (184), Expect = 4e-16
Identities = 15/108 (13%), Positives = 32/108 (29%), Gaps = 18/108 (16%)
Query: 288 PDPNPPPVILFGPANQTLPLRSEARLRCQVRGEG--SVQWWRGEREVGSGP--------- 336
P + + P +Q + L C+ G +QWW +
Sbjct: 16 PRGSHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARL 75
Query: 337 -------RVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLR 377
+ ++ + + +ED+G Y C + + + R
Sbjct: 76 DRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPR 123
Score = 69.7 bits (170), Expect = 3e-14
Identities = 24/119 (20%), Positives = 35/119 (29%), Gaps = 20/119 (16%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSK------------- 53
F P SQ+ G + L C G P P + W G + S+
Sbjct: 23 GFVQAPLSQQRWVGGSVELHCEA-VGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIH 81
Query: 54 -RLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTV 111
+ ++I + D G Y+C N T RV +R V
Sbjct: 82 ATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLT-RAPRVK----WVRAQAVVLV 135
Score = 52.3 bits (125), Expect = 4e-08
Identities = 22/128 (17%), Positives = 36/128 (28%), Gaps = 10/128 (7%)
Query: 178 SASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGN-----RSLIY 232
S+ + P + VG C GSP P W EG S ++
Sbjct: 11 SSGLVPRGSHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLW 70
Query: 233 PGDRVDNIQAEIT--SDGMNLLKIQNVSRT-AAPLIILCLGVNAAGSDLARASLTVSGPD 289
G R+D + T + + I + C N + + V
Sbjct: 71 DGARLDRVHIHATYHQHAASTISIDTLVEEDTG--TYECRASNDPDRNHLTRAPRVKWVR 128
Query: 290 PNPPPVIL 297
++L
Sbjct: 129 AQAVVLVL 136
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed
death-1 ligand 1, complex, costimulatory, immune system;
2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Length = 222
Score = 85.1 bits (210), Expect = 1e-18
Identities = 33/216 (15%), Positives = 56/216 (25%), Gaps = 34/216 (15%)
Query: 8 FRVQ--PKSQRVAAGDTALLEC----GPPRGHPEPTLVWKKNGHPI-------------D 48
F V V G +EC + W+ I
Sbjct: 2 FTVTVPKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQH 61
Query: 49 FENSKRLRLVDGT------NLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYI 102
+R RL+ L I D + D G Y+C++ G + ++V
Sbjct: 62 SSYRQRARLLKDQLSLGNAALQITDVKLQDAGVYRCMISY--GGADYKRITVKVNAPYNK 119
Query: 103 IRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRL-GSAMPEDRMSVLPSRSLQLSDV--- 158
I +S C G V W + + R +L +V
Sbjct: 120 INQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTST 179
Query: 159 ---RLEDAGEYVCEAENAVGKISASATLTVQMAPIV 191
+ C + + +A L + P+
Sbjct: 180 LRINTTTNEIFYCTFRRLDPEENHTAELVIPELPLA 215
Score = 77.0 bits (189), Expect = 7e-16
Identities = 41/221 (18%), Positives = 68/221 (30%), Gaps = 33/221 (14%)
Query: 103 IRGPKDT-TVSASSIIVFECSVGGDAV-----LTVHWKRLGSA--------------MPE 142
+ PKD V S + EC + L V+W+
Sbjct: 4 VTVPKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSS 63
Query: 143 --DRMSVLPSR------SLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRER 194
R +L + +LQ++DV+L+DAG Y C G T+ V +
Sbjct: 64 YRQRARLLKDQLSLGNAALQITDVKLQDAGVYRCMISYG-GADYKRITVKVNAPYNKINQ 122
Query: 195 PSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKI 254
+ V + C EG P W ++ L ++ + E + + L+I
Sbjct: 123 RILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRI 182
Query: 255 QNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPV 295
+ I C + A L + PP
Sbjct: 183 NTTTNE----IFYCTFRRLDPEENHTAELVIPELPLAHPPN 219
Score = 72.7 bits (178), Expect = 2e-14
Identities = 39/201 (19%), Positives = 63/201 (31%), Gaps = 32/201 (15%)
Query: 201 EVGRDAVFLCGIEGSPPPST-----FWMLEGNRSLIY-PGDRVDNIQAEITSDGMNLLKI 254
E G + C +W +E + + G+ +Q LLK
Sbjct: 14 EYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKD 73
Query: 255 QNVSRTAAPLII-----------LCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQ 303
Q AA L I C+ ++ G+D R ++ V+ P
Sbjct: 74 QLSLGNAA-LQITDVKLQDAGVYRCM-ISYGGADYKRITVKVNAPYNKINQ-----RILV 126
Query: 304 TLPLRSEARLRCQVRG--EGSVQWWRGEREVGSGPRVNVTGDGSLVLTDVT------KED 355
P+ SE L CQ G + V W + +V SG L +VT
Sbjct: 127 VDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTT 186
Query: 356 SGEYTCVVKSPHGSASWSASL 376
+ + C + + +A L
Sbjct: 187 NEIFYCTFRRLDPEENHTAEL 207
Score = 40.8 bits (95), Expect = 0.001
Identities = 20/126 (15%), Positives = 40/126 (31%), Gaps = 40/126 (31%)
Query: 284 TVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRGEGS-------VQWWRGEREVGS-- 334
TV+ P + S + C+ E V W ++ +
Sbjct: 3 TVTVP-----------KDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFV 51
Query: 335 -------------GPRVNV------TGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSAS 375
R + G+ +L +TDV +D+G Y C++ G+ +
Sbjct: 52 HGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITDVKLQDAGVYRCMISYG-GADYKRIT 110
Query: 376 LRFESP 381
++ +P
Sbjct: 111 VKVNAP 116
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon,
OKT3 FAB, signaling protein/antibiotic complex; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Length = 204
Score = 84.6 bits (208), Expect = 1e-18
Identities = 31/196 (15%), Positives = 51/196 (26%), Gaps = 39/196 (19%)
Query: 20 GDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCV 79
+ LL C + W K+G I F D + + K G YQC
Sbjct: 18 DGSVLLTCDAE----AKNITWFKDGKMIGFLTE------DKKKWNLGSNAKDPRGMYQCK 67
Query: 80 VKNVAGTRESTDAVLRV-----LVKPYIIRGPKDTTVSASSIIV----------FECSVG 124
+ KD S ++ S+
Sbjct: 68 GSQNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSIS 127
Query: 125 GDAVL---------TVHWKRLGSAMPED---RMSVLPSRSLQLSDV-RLEDAGEYVCEAE 171
G V+ + W+ + D + L L + LE +G YVC
Sbjct: 128 GTTVILTCPQYPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPR 187
Query: 172 NAVGKI-SASATLTVQ 186
+ + + L +
Sbjct: 188 GSKPEDANFYLYLRAR 203
Score = 79.9 bits (196), Expect = 4e-17
Identities = 18/96 (18%), Positives = 38/96 (39%), Gaps = 5/96 (5%)
Query: 5 REEFRVQPKSQRVA-AGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNL 63
E + +V+ +G T +L C +P ++W+ N I + + D +L
Sbjct: 112 EEMGGITQTPYKVSISGTTVILTC---PQYPGSEILWQHNDKNIGGDEDDKNIGSDEDHL 168
Query: 64 AIQDSRKTDD-GRYQCVVKNVAGTRESTDAVLRVLV 98
++++ + + G Y C + + LR V
Sbjct: 169 SLKEFSELEQSGYYVCYPRGSKPEDANFYLYLRARV 204
Score = 56.1 bits (134), Expect = 8e-09
Identities = 25/184 (13%), Positives = 50/184 (27%), Gaps = 25/184 (13%)
Query: 205 DAVFL-CGIEGSPPPSTFWMLEGNRSLIYPGDRVD-NIQAEITSD-GM----------NL 251
+V L C + + W +G D+ N+ + GM
Sbjct: 19 GSVLLTCD---AEAKNITWFKDGKMIGFLTEDKKKWNLGSNAKDPRGMYQCKGSQNKSKP 75
Query: 252 LKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSE- 310
L++ +A + A D A+ + + +
Sbjct: 76 LQVYYRMGSADDAKKDAAKKDDAKKDDAKKD-----GSDGNEEMGGITQTPYKVSISGTT 130
Query: 311 ARLRCQVRGEGSVQWWRGEREVGSGPRVNVT--GDGSLVLTDVTK-EDSGEYTCVVKSPH 367
L C + W ++ +G + L L + ++ E SG Y C +
Sbjct: 131 VILTCPQYPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSK 190
Query: 368 GSAS 371
+
Sbjct: 191 PEDA 194
Score = 45.3 bits (106), Expect = 3e-05
Identities = 23/186 (12%), Positives = 43/186 (23%), Gaps = 38/186 (20%)
Query: 117 IVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGK 176
++ C + W + G + + L + G Y C+ K
Sbjct: 21 VLLTCDA---EAKNITWFKDGKMIGFLTED---KKKWNLGSNAKDPRGMYQCKGSQNKSK 74
Query: 177 ------ISASATLTVQMAPIVRERPSDLRLEVGRDAV----------FLCGIEGS----- 215
SA + A + D + G D + I G+
Sbjct: 75 PLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTTVILT 134
Query: 216 ----PPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGV 271
P W I + + + L ++ S +C
Sbjct: 135 CPQYPGSEILWQHNDK--NIGGDEDD-----KNIGSDEDHLSLKEFSELEQSGYYVCYPR 187
Query: 272 NAAGSD 277
+ D
Sbjct: 188 GSKPED 193
>1x4z_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes
(CDON)binding...; fibronectin type III, FN3; NMR {Mus
musculus} SCOP: b.1.2.1
Length = 121
Score = 81.3 bits (201), Expect = 2e-18
Identities = 27/109 (24%), Positives = 43/109 (39%), Gaps = 13/109 (11%)
Query: 398 PGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVR 457
P P +PT+ + + + W G + ++VE W+
Sbjct: 18 PEAPDRPTISTASETSVYVTWIPRGN-GGFPIQSFRVEYKK----------LKKVGDWIL 66
Query: 458 VATNVP--SPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRG 504
+ +P + +T L G++Y F VRALN G S PS S V+ G
Sbjct: 67 ATSAIPPSRLSVEITGLEKGISYKFRVRALNMLGESEPSAPSRPYVVSG 115
Score = 49.3 bits (118), Expect = 3e-07
Identities = 24/122 (19%), Positives = 43/122 (35%), Gaps = 10/122 (8%)
Query: 625 DGKPSNLRAVRTLECEPS--GVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQI--- 679
S + P P ++ + TSV + W P I+++++
Sbjct: 2 SSGSSGSQPDHGRLSPPEAPDRPTIST---ASETSVYVTWIPRG--NGGFPIQSFRVEYK 56
Query: 680 IVGGGNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGP 739
+ + L + S ++ +T L GI Y + A N G S P+ + SG
Sbjct: 57 KLKKVGDWILATSAIPPSRLSVEITGLEKGISYKFRVRALNMLGESEPSAPSRPYVVSGS 116
Query: 740 EP 741
P
Sbjct: 117 GP 118
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 79.7 bits (197), Expect = 3e-18
Identities = 16/90 (17%), Positives = 34/90 (37%), Gaps = 1/90 (1%)
Query: 100 PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVR 159
+ V ++ C + D V +++W R G + E + + +++ D
Sbjct: 4 GSSGVEVESFLVHPGDLLQLRCRLRDD-VQSINWLRDGVQLAESNRTRITGEEVEVQDSV 62
Query: 160 LEDAGEYVCEAENAVGKISASATLTVQMAP 189
D+G Y C + G + ++ V A
Sbjct: 63 PADSGLYACVTSSPSGSDTTYFSVNVSDAL 92
Score = 76.3 bits (188), Expect = 5e-17
Identities = 27/100 (27%), Positives = 40/100 (40%), Gaps = 8/100 (8%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQ 66
V+ +S V GD L C R ++ W ++G + S R R+ + +Q
Sbjct: 5 SSGVEVESFLVHPGDLLQLRC-RLRDDV-QSINWLRDGVQL--AESNRTRITGEE-VEVQ 59
Query: 67 DSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGP 106
DS D G Y CV + +G S V V + GP
Sbjct: 60 DSVPADSGLYACVTSSPSG---SDTTYFSVNVSDALPSGP 96
Score = 74.0 bits (182), Expect = 4e-16
Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 2/86 (2%)
Query: 293 PPVILFGPANQTLPLRSEARLRCQVRGEG-SVQWWRGEREVGSGPRVNVTGDGSLVLTDV 351
+ + +LRC++R + S+ W R ++ R +TG + + D
Sbjct: 3 SGSSGVEVESFLVHPGDLLQLRCRLRDDVQSINWLRDGVQLAESNRTRITG-EEVEVQDS 61
Query: 352 TKEDSGEYTCVVKSPHGSASWSASLR 377
DSG Y CV SP GS + S+
Sbjct: 62 VPADSGLYACVTSSPSGSDTTYFSVN 87
Score = 47.0 bits (112), Expect = 9e-07
Identities = 18/107 (16%), Positives = 37/107 (34%), Gaps = 12/107 (11%)
Query: 188 APIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSD 247
+ + G C + W+ +G + + +R IT +
Sbjct: 3 SGSSGVEVESFLVHPGDLLQLRCRLRDDVQSIN-WLRDGVQ--LAESNRT-----RITGE 54
Query: 248 GMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPP 294
+++Q+ + L C+ + +GSD S+ VS P+ P
Sbjct: 55 E---VEVQDSVPADSGLYA-CVTSSPSGSDTTYFSVNVSDALPSGPS 97
>2dmk_A Midline 2 isoform 2; midline defect 2, tripartite motif protein 1,
midin-2, ring finger protein 60, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 127
Score = 80.7 bits (199), Expect = 3e-18
Identities = 24/112 (21%), Positives = 46/112 (41%), Gaps = 5/112 (4%)
Query: 390 RAPEPSTYPGPPT-KPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSG 448
+ T P PP+ + L + + +T+ W + S+ Y+++ ++ S
Sbjct: 8 EGLDYLTAPNPPSIREELCTASHDTITVHWISD---DEFSISSYELQYTIFTGQANFISL 64
Query: 449 DTATATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEI 500
+ +W+ V N+ TV L G Y F+V+A+N G P +
Sbjct: 65 YNSVDSWMIV-PNIKQNHYTVHGLQSGTRYIFIVKAINQAGSRNSEPTRLKT 115
Score = 35.3 bits (81), Expect = 0.023
Identities = 23/110 (20%), Positives = 37/110 (33%), Gaps = 11/110 (10%)
Query: 641 PSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVS----- 695
PS +L + ++ + W + + Y I G N +L N S
Sbjct: 19 PSIREELCT---ASHDTITVHWISDDEFSISSYELQYTIFTGQANFISLYNSVDSWMIVP 75
Query: 696 -ASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGPEPRLE 744
+ L +G RY + A N+AG S P L T+ +
Sbjct: 76 NIKQNHYTVHGLQSGTRYIFIVKAINQAG-SRNSEPTRLK-TNSQPFKSG 123
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 110
Score = 80.1 bits (198), Expect = 4e-18
Identities = 23/99 (23%), Positives = 34/99 (34%), Gaps = 7/99 (7%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN---- 62
F ++ K ++ G C G+P+P + W K+G I S + +
Sbjct: 10 FFEMKLKHYKIFEGMPVTFTC-RVAGNPKPKIYWFKDGKQIS-PKSDHYTIQRDLDGTCS 67
Query: 63 LAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPY 101
L S DDG Y + N G T L V
Sbjct: 68 LHTTASTLDDDGNYTIMAANPQGRISCT-GRLMVQAVNS 105
Score = 76.6 bits (189), Expect = 6e-17
Identities = 23/97 (23%), Positives = 35/97 (36%), Gaps = 6/97 (6%)
Query: 99 KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSR------S 152
P+ K + + F C V G+ ++W + G + R S
Sbjct: 8 APFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCS 67
Query: 153 LQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAP 189
L + L+D G Y A N G+IS + L VQ
Sbjct: 68 LHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAVN 104
Score = 76.2 bits (188), Expect = 7e-17
Identities = 18/99 (18%), Positives = 37/99 (37%), Gaps = 7/99 (7%)
Query: 293 PPVILFGPANQTLPLRSEARLRCQVRG--EGSVQWWRGEREVGSGPRV-----NVTGDGS 345
P + + C+V G + + W++ +++ ++ G S
Sbjct: 8 APFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCS 67
Query: 346 LVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNP 384
L T T +D G YT + +P G S + L ++ +
Sbjct: 68 LHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAVNSG 106
Score = 55.8 bits (135), Expect = 1e-09
Identities = 22/107 (20%), Positives = 34/107 (31%), Gaps = 7/107 (6%)
Query: 188 APIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSD 247
AP + ++ G F C + G+P P +W +G + I P IQ + D
Sbjct: 8 APFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQ--ISPKSDHYTIQRD--LD 63
Query: 248 GMNLLKIQNVSRT-AAPLIILCLGVNAAGSDLARASLTVSGPDPNPP 293
G L + + N G L V + P
Sbjct: 64 GTCSLHTTASTLDDDG--NYTIMAANPQGRISCTGRLMVQAVNSGPS 108
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2edl_A
2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Length = 108
Score = 79.7 bits (197), Expect = 4e-18
Identities = 25/108 (23%), Positives = 44/108 (40%), Gaps = 10/108 (9%)
Query: 292 PPPVILFGPANQTLPLRSEARLRCQVRGEGSVQWWRGEREVGSGPRVNVTGDG---SLVL 348
P + + A L+C++ V+W +G + G R ++ DG L +
Sbjct: 7 GPARFTQDLKTKEASEGATATLQCELSKVAPVEWKKGPETLRDGGRYSLKQDGTRCELQI 66
Query: 349 TDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPST 396
D++ D+GEY+C+ G SA+L + F PS+
Sbjct: 67 HDLSVADAGEYSCMC----GQERTSATLTVRALPAR---FTEGSGPSS 107
Score = 73.9 bits (182), Expect = 4e-16
Identities = 29/108 (26%), Positives = 39/108 (36%), Gaps = 14/108 (12%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV-DGTN--L 63
F K++ + G TA L+C + WKK + + R L DGT L
Sbjct: 10 RFTQDLKTKEASEGATATLQC---ELSKVAPVEWKKGPETL--RDGGRYSLKQDGTRCEL 64
Query: 64 AIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKP-YIIRGPKDTT 110
I D D G Y C+ E T A L V P G ++
Sbjct: 65 QIHDLSVADAGEYSCMCGQ-----ERTSATLTVRALPARFTEGSGPSS 107
Score = 72.8 bits (179), Expect = 1e-15
Identities = 27/101 (26%), Positives = 40/101 (39%), Gaps = 10/101 (9%)
Query: 100 PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPE-DRMSVLPS---RSLQL 155
+ K S + +C + A V WK+ + + R S+ LQ+
Sbjct: 9 ARFTQDLKTKEASEGATATLQCELSKVA--PVEWKKGPETLRDGGRYSLKQDGTRCELQI 66
Query: 156 SDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERPS 196
D+ + DAGEY C G+ SATLTV+ P S
Sbjct: 67 HDLSVADAGEYSCMC----GQERTSATLTVRALPARFTEGS 103
Score = 42.4 bits (100), Expect = 5e-05
Identities = 20/105 (19%), Positives = 29/105 (27%), Gaps = 17/105 (16%)
Query: 188 APIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSD 247
+ G A C E S W + G R + D
Sbjct: 8 PARFTQDLKTKEASEGATATLQC--ELSKVAPVEWKKGPE--TLRDGGRY-----SLKQD 58
Query: 248 GMN-LLKIQNVSRT-AAPLIILCLGVNAAGSDLARASLTVSGPDP 290
G L+I ++S A C+ G + A+LTV
Sbjct: 59 GTRCELQIHDLSVADAG--EYSCM----CGQERTSATLTVRALPA 97
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain,
SLOW-type myosin-binding protein C, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 79.3 bits (196), Expect = 4e-18
Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 5/92 (5%)
Query: 293 PPVILFGPANQTLPLRSEARLRCQVRGEGSVQWWRGEREVGSGPRVNVTGDG---SLVLT 349
IL +QT+ L E L+C++ +W + V R+ V G LV+
Sbjct: 7 GLKILTPLTDQTVNLGKEICLKCEISENIPGKWTKNGLPVQESDRLKVVQKGRIHKLVIA 66
Query: 350 DVTKEDSGEYTCVVKSPHGSASWSASLRFESP 381
+ ED G+Y + + + A + S
Sbjct: 67 NALTEDEGDYVFAPDA--YNVTLPAKVHVISG 96
Score = 73.1 bits (180), Expect = 7e-16
Identities = 20/94 (21%), Positives = 36/94 (38%), Gaps = 8/94 (8%)
Query: 100 PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSA-MPEDRMSVL---PSRSLQL 155
I+ D TV+ I +C + + W + G DR+ V+ L +
Sbjct: 8 LKILTPLTDQTVNLGKEICLKCEISENI--PGKWTKNGLPVQESDRLKVVQKGRIHKLVI 65
Query: 156 SDVRLEDAGEYVCEAENAVGKISASATLTVQMAP 189
++ ED G+YV + ++ A + V P
Sbjct: 66 ANALTEDEGDYVFAPDA--YNVTLPAKVHVISGP 97
Score = 68.1 bits (167), Expect = 4e-14
Identities = 24/97 (24%), Positives = 35/97 (36%), Gaps = 11/97 (11%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV-DGTN--L 63
+ Q V G L+C W KNG P+ + S RL++V G L
Sbjct: 9 KILTPLTDQTVNLGKEICLKC---EISENIPGKWTKNGLPV--QESDRLKVVQKGRIHKL 63
Query: 64 AIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKP 100
I ++ D+G Y T A + V+ P
Sbjct: 64 VIANALTEDEGDYVFAPDAYNVT---LPAKVHVISGP 97
Score = 40.4 bits (95), Expect = 2e-04
Identities = 16/103 (15%), Positives = 30/103 (29%), Gaps = 15/103 (14%)
Query: 188 APIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSD 247
+ +D + +G++ C I + P W G + DR+ ++
Sbjct: 7 GLKILTPLTDQTVNLGKEICLKCEISENIPGK--WTKNGL--PVQESDRL-----KVVQK 57
Query: 248 GMN-LLKIQNVSRT-AAPLIILCLGVNAAGSDLARASLTVSGP 288
G L I N + A + A + V
Sbjct: 58 GRIHKLVIANALTEDEG--DYVF--APDAYNVTLPAKVHVISG 96
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 126
Score = 80.0 bits (197), Expect = 5e-18
Identities = 24/106 (22%), Positives = 35/106 (33%), Gaps = 16/106 (15%)
Query: 100 PYIIRGPKDTTVSASSIIVFECSVGGDAVL---TVHW-------------KRLGSAMPED 143
I P+ TV I F V + +L T+ W K L +
Sbjct: 8 ILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFE 67
Query: 144 RMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAP 189
R S + + +Q+ + AG Y CE S S L V +
Sbjct: 68 RHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHEST 113
Score = 71.2 bits (174), Expect = 7e-15
Identities = 16/113 (14%), Positives = 36/113 (31%), Gaps = 17/113 (15%)
Query: 287 GPDPNPPPVILFGPANQTLPLRSEARLRCQVRGEG-----SVQWWRG---EREVGSGPRV 338
G + + + P T+ + + +V+ E +++W++G + +G +
Sbjct: 1 GSSGSSGILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHL 60
Query: 339 NVTGDG---------SLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPT 382
+ + + +G Y C V S S L T
Sbjct: 61 QLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHEST 113
Score = 61.5 bits (149), Expect = 2e-11
Identities = 18/106 (16%), Positives = 31/106 (29%), Gaps = 15/106 (14%)
Query: 8 FRVQPKSQRVAAGDTALLEC---GPPRGHPEPTLVWKKNG-HPIDFENSKRLRLVDGTN- 62
F +P+ V G+ PT+ W K + + K L+L +
Sbjct: 10 FIEKPQGGTVKVGEDITFIAKVKAEDLLRK-PTIKWFKGKWMDLASKAGKHLQLKETFER 68
Query: 63 --------LAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKP 100
+ I ++ G Y+C V + L V
Sbjct: 69 HSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCS-FDLEVHEST 113
Score = 49.6 bits (118), Expect = 2e-07
Identities = 21/127 (16%), Positives = 40/127 (31%), Gaps = 12/127 (9%)
Query: 184 TVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSP---PPSTFWMLEGNRSLIYPGDRVDNI 240
+ + E+P ++VG D F+ ++ P+ W L + ++
Sbjct: 3 SGSSGILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGK--HL 60
Query: 241 QAEITSDGMNL-----LKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPV 295
Q + T + + ++I A C D L V P
Sbjct: 61 QLKETFERHSRVYTFEMQIIKAKDNFAGNYR-CEVTYKDKFDSCSFDLEVHES-TGTTPN 118
Query: 296 ILFGPAN 302
I GP++
Sbjct: 119 IDSGPSS 125
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain,
beta-sandwhich, I-SET, structural protein; 2.10A {Homo
sapiens} SCOP: b.1.1.4
Length = 99
Score = 79.2 bits (196), Expect = 5e-18
Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 6/94 (6%)
Query: 293 PPVILFGPANQTLPLRSEARLRCQVRG--EGSVQWWRGEREVGSGPRVNVT----GDGSL 346
P I +QT+ S+A R +V G + +W++ ++ R+ L
Sbjct: 5 APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCEL 64
Query: 347 VLTDVTKEDSGEYTCVVKSPHGSASWSASLRFES 380
V+ DVT EDS + G S A L ++
Sbjct: 65 VIRDVTGEDSASIMVKAINIAGETSSHAFLLVQA 98
Score = 78.1 bits (193), Expect = 1e-17
Identities = 25/92 (27%), Positives = 35/92 (38%), Gaps = 5/92 (5%)
Query: 100 PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAM-PEDRMSVLPSR----SLQ 154
P I + TV S F V G W + G + DR+ L
Sbjct: 6 PKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELV 65
Query: 155 LSDVRLEDAGEYVCEAENAVGKISASATLTVQ 186
+ DV ED+ + +A N G+ S+ A L VQ
Sbjct: 66 IRDVTGEDSASIMVKAINIAGETSSHAFLLVQ 97
Score = 76.2 bits (188), Expect = 7e-17
Identities = 27/94 (28%), Positives = 35/94 (37%), Gaps = 8/94 (8%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN---- 62
+ + +SQ V G A G P+P W KNG I E S R+ +
Sbjct: 7 KIFERIQSQTVGQGSDAHFRV-RVVGKPDPECEWYKNGVKI--ERSDRIYWYWPEDNVCE 63
Query: 63 LAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRV 96
L I+D D N+AG S A L V
Sbjct: 64 LVIRDVTGEDSASIMVKAINIAGETSSH-AFLLV 96
Score = 58.1 bits (141), Expect = 1e-10
Identities = 29/101 (28%), Positives = 40/101 (39%), Gaps = 8/101 (7%)
Query: 188 APIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSD 247
AP + ER + G DA F + G P P W G I DR I D
Sbjct: 5 APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGV--KIERSDR---IYWYWPED 59
Query: 248 GMNLLKIQNVSRT-AAPLIILCLGVNAAGSDLARASLTVSG 287
+ L I++V+ +A I+ +N AG + A L V
Sbjct: 60 NVCELVIRDVTGEDSA--SIMVKAINIAGETSSHAFLLVQA 98
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac
muscle, hypertrophic cardiomyopathy, actin-binding, cell
adhesion, disease mutation; NMR {Homo sapiens}
Length = 95
Score = 78.5 bits (194), Expect = 9e-18
Identities = 21/95 (22%), Positives = 37/95 (38%), Gaps = 10/95 (10%)
Query: 288 PDPNPPPVILF--GPANQTLPLRSEARLRCQVRGE-GSVQWWRGEREVGSGPRVNVTGDG 344
P+P PV F P + + S A + V+W RG ++ + + + +G
Sbjct: 1 PEPGKKPVSAFSKKPRSVEVAAGSPAVFEAETERAGVKVRWQRGGSDISASNKYGLATEG 60
Query: 345 ---SLVLTDVTKEDSGEYTCVVKSPHGSASWSASL 376
+L + +V D G Y + GS+ L
Sbjct: 61 TRHTLTVREVGPADQGSYAVIA----GSSKVKFDL 91
Score = 70.4 bits (173), Expect = 6e-15
Identities = 22/93 (23%), Positives = 36/93 (38%), Gaps = 12/93 (12%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV-DGTN--L 63
F +P+S VAAG A+ E + W++ G I S + L +GT L
Sbjct: 10 AFSKKPRSVEVAAGSPAVFEAET--ERAGVKVRWQRGGSDI--SASNKYGLATEGTRHTL 65
Query: 64 AIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRV 96
+++ D G Y + + L+V
Sbjct: 66 TVREVGPADQGSYAVIAGS-----SKVKFDLKV 93
Score = 70.1 bits (172), Expect = 7e-15
Identities = 22/92 (23%), Positives = 33/92 (35%), Gaps = 9/92 (9%)
Query: 99 KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPE-DRMSVLP---SRSLQ 154
+ P+ V+A S VFE V V W+R GS + ++ + +L
Sbjct: 8 VSAFSKKPRSVEVAAGSPAVFEAETERAGV-KVRWQRGGSDISASNKYGLATEGTRHTLT 66
Query: 155 LSDVRLEDAGEYVCEAENAVGKISASATLTVQ 186
+ +V D G Y A G L V
Sbjct: 67 VREVGPADQGSYAVIA----GSSKVKFDLKVI 94
Score = 41.2 bits (97), Expect = 9e-05
Identities = 18/99 (18%), Positives = 31/99 (31%), Gaps = 16/99 (16%)
Query: 189 PIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDG 248
++P + + G AVF E W G S I ++ + ++G
Sbjct: 9 SAFSKKPRSVEVAAGSPAVFEAETER-AGVKVRWQRGG--SDISASNKY-----GLATEG 60
Query: 249 MN-LLKIQNVSRT-AAPLIILCLGVNAAGSDLARASLTV 285
L ++ V + AGS + L V
Sbjct: 61 TRHTLTVREVGPADQG--SYAVI----AGSSKVKFDLKV 93
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase,
heparin-binding, nucleotide-binding, immunoglobulin
domain, alternatice splicing; NMR {Mus musculus}
Length = 95
Score = 78.3 bits (193), Expect = 9e-18
Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 2/91 (2%)
Query: 288 PDPNPPPVILFGPANQTLPLRSEARLRCQVRG-EGSVQWWRGEREVGSGPRVNVTGDGSL 346
P+ P + + + +LRC++R S+ W R ++ R +TG +
Sbjct: 4 PEQAQPWGVPVEVESLLVHPGDLLQLRCRLRDDVQSINWLRDGVQLVESNRTRITG-EEV 62
Query: 347 VLTDVTKEDSGEYTCVVKSPHGSASWSASLR 377
+ D DSG Y CV SP GS + S+
Sbjct: 63 EVRDSIPADSGLYACVTSSPSGSDTTYFSVN 93
Score = 77.9 bits (192), Expect = 1e-17
Identities = 15/86 (17%), Positives = 34/86 (39%), Gaps = 1/86 (1%)
Query: 100 PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVR 159
+ + V ++ C + D V +++W R G + E + + +++ D
Sbjct: 10 WGVPVEVESLLVHPGDLLQLRCRLRDD-VQSINWLRDGVQLVESNRTRITGEEVEVRDSI 68
Query: 160 LEDAGEYVCEAENAVGKISASATLTV 185
D+G Y C + G + ++ V
Sbjct: 69 PADSGLYACVTSSPSGSDTTYFSVNV 94
Score = 70.6 bits (173), Expect = 5e-15
Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 6/89 (6%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQD 67
V+ +S V GD L C ++ W ++G + S R R+ + ++D
Sbjct: 12 VPVEVESLLVHPGDLLQLRC--RLRDDVQSINWLRDGVQL--VESNRTRITGEE-VEVRD 66
Query: 68 SRKTDDGRYQCVVKNVAGTRESTDAVLRV 96
S D G Y CV + +G+ ++T + V
Sbjct: 67 SIPADSGLYACVTSSPSGS-DTTYFSVNV 94
Score = 42.5 bits (100), Expect = 4e-05
Identities = 22/106 (20%), Positives = 40/106 (37%), Gaps = 13/106 (12%)
Query: 182 TLTVQMAP-IVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNI 240
TL Q P V L + G C + S W+ +G + + +R
Sbjct: 2 TLPEQAQPWGVPVEVESLLVHPGDLLQLRCRLRD-DVQSINWLRDGVQ--LVESNRT--- 55
Query: 241 QAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVS 286
IT + +++++ + L C+ + +GSD S+ VS
Sbjct: 56 --RITGE---EVEVRDSIPADSGLYA-CVTSSPSGSDTTYFSVNVS 95
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states,
actin-binding, cardiomyopathy, cell adhesion, disease
mutation, immunoglobulin domain; 1.30A {Homo sapiens}
PDB: 2v6h_A 2avg_A
Length = 108
Score = 78.5 bits (193), Expect = 1e-17
Identities = 23/103 (22%), Positives = 35/103 (33%), Gaps = 16/103 (15%)
Query: 100 PYIIRGPKDTTVSASSIIVFECSVGGDAVL---TVHW-------------KRLGSAMPED 143
+ P+D V+ I F V G ++L V W + L D
Sbjct: 5 GLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYD 64
Query: 144 RMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQ 186
R S + L ++D + G Y CE ++ LTV
Sbjct: 65 RASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTVH 107
Score = 66.9 bits (163), Expect = 1e-13
Identities = 17/102 (16%), Positives = 33/102 (32%), Gaps = 17/102 (16%)
Query: 292 PPPVILFGPANQTLPLRSEARLRCQVRGEG-----SVQWWRGEREVG------------S 334
P + + P + + + +V G V+W++G+ S
Sbjct: 3 PIGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDS 62
Query: 335 GPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASL 376
R + L +TD +G Y C V + + +L
Sbjct: 63 YDRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNL 104
Score = 59.6 bits (144), Expect = 6e-11
Identities = 21/102 (20%), Positives = 31/102 (30%), Gaps = 15/102 (14%)
Query: 8 FRVQPKSQRVAAGDTALLEC---GPPRGHPEPTLVWKKN---------GHPIDFENSKRL 55
F ++P+ V G + G P P + W K G + +S
Sbjct: 7 FVMRPQDGEVTVGGSITFSARVAGASLLKP-PVVKWFKGKWVDLSSKVGQHLQLHDSYDR 65
Query: 56 RLVDGT-NLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRV 96
L I D++ G Y+C V S L V
Sbjct: 66 ASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSN-FNLTV 106
Score = 41.5 bits (97), Expect = 1e-04
Identities = 18/104 (17%), Positives = 29/104 (27%), Gaps = 7/104 (6%)
Query: 188 APIVRERPSDLRLEVGRDAVFLCGIEGSP---PPSTFWMLEGNRSLIYPGDRVDNIQAEI 244
+ RP D + VG F + G+ PP W L + +
Sbjct: 4 IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSY 63
Query: 245 ---TSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTV 285
+ + L I + C D + +LTV
Sbjct: 64 DRASKVYLFELHITDAQPAFTGSYR-CEVSTKDKFDCSNFNLTV 106
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Length = 171
Score = 80.7 bits (199), Expect = 1e-17
Identities = 31/185 (16%), Positives = 60/185 (32%), Gaps = 28/185 (15%)
Query: 12 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPI-DFENSK---------RLRLVDGT 61
+ P P ++WKK + + ENS+ R+ L +
Sbjct: 2 SQQIYGVVYGNVTFHV--PSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVS 59
Query: 62 -NLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFE 120
+L I + +D+ Y+ N+ T + VL ++ KP I + T++
Sbjct: 60 GSLTIYNLTSSDEDEYEMESPNITDTMKFFLYVLEMVSKPMIYWECSNATLT-------- 111
Query: 121 CSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISAS 180
C V + + + + R +S + C+A N V + S
Sbjct: 112 CEVLEGTDVELKLYQGKEHLR-------SLRQKTMSYQWTNLRAPFKCKAVNRVSQESEM 164
Query: 181 ATLTV 185
+
Sbjct: 165 EVVNC 169
Score = 48.8 bits (116), Expect = 1e-06
Identities = 22/177 (12%), Positives = 53/177 (29%), Gaps = 30/177 (16%)
Query: 202 VGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRV---DNIQAEITSDGMNL-LKIQNV 257
V + F P W + ++ + + + D ++ L I N+
Sbjct: 9 VYGNVTFHVP-SNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNL 67
Query: 258 SRT-AAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQ 316
+ + N + + L V + P+I + +N TL C+
Sbjct: 68 TSSDEDEYE--MESPNITDT--MKFFLYVL--EMVSKPMIYWECSNATL--------TCE 113
Query: 317 VRG--EGSVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSAS 371
V + ++ ++G+ + S + ++ + C + S
Sbjct: 114 VLEGTDVELKLYQGKEHLRSLRQ--------KTMSYQWTNLRAPFKCKAVNRVSQES 162
Score = 42.2 bits (99), Expect = 2e-04
Identities = 19/122 (15%), Positives = 36/122 (29%), Gaps = 27/122 (22%)
Query: 322 SVQWWRGEREVGS-------------GPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHG 368
V W + + +V T GSL + ++T D EY +
Sbjct: 25 EVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNITD 84
Query: 369 SASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANG--LTLAWSRNNQIGS 426
+ + + E + P I + + TL + G + L + +
Sbjct: 85 TMKFFLYV-LEMVSKPMIYW-----------ECSNATLTCEVLEGTDVELKLYQGKEHLR 132
Query: 427 SS 428
S
Sbjct: 133 SL 134
>1wis_A KIAA1514 protein; FNIII domain, sidekick-2, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 124
Score = 78.9 bits (195), Expect = 1e-17
Identities = 28/123 (22%), Positives = 46/123 (37%), Gaps = 9/123 (7%)
Query: 379 ESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYS 438
S ++ I PE PGPPT + N +TL + G +S+ + VE
Sbjct: 2 SSGSSGTISSGVPPEL---PGPPTNLGISNIGPRSVTLQFRPGYD-GKTSISRWLVEAQV 57
Query: 439 RPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSD 498
+++ + + V +L Y+F +R +N G S PS S
Sbjct: 58 -----GVVGEGEEWLLIHQLSNEPDARSMEVPDLNPFTCYSFRMRQVNIVGTSPPSQPSR 112
Query: 499 EIV 501
+I
Sbjct: 113 KIQ 115
Score = 42.3 bits (100), Expect = 8e-05
Identities = 18/114 (15%), Positives = 39/114 (34%), Gaps = 13/114 (11%)
Query: 625 DGKPSNLRAVRTLECEPS--GVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQI--- 679
S + P +++ + SV L+++P G I + +
Sbjct: 2 SSGSSGTISSGVPPELPGPPTNLGISN---IGPRSVTLQFRPGYDG--KTSISRWLVEAQ 56
Query: 680 ---IVGGGNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRP 730
+ G + ++ ++ + +L+ YS + N GT P S+P
Sbjct: 57 VGVVGEGEEWLLIHQLSNEPDARSMEVPDLNPFTCYSFRMRQVNIVGTSPPSQP 110
>1wfn_A Sidekick 2; FN3, cell adhesion, structural genomics, riken
structural genomics/proteomics initiative, RSGI; NMR
{Homo sapiens} SCOP: b.1.2.1
Length = 119
Score = 78.6 bits (194), Expect = 1e-17
Identities = 29/118 (24%), Positives = 49/118 (41%), Gaps = 7/118 (5%)
Query: 625 DGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQI-IVGG 683
S + VRT E P V L+ + TS+ + W+ P NG++ Y+I
Sbjct: 2 SSGSSGPQLVRTHEDVPGPVGHLS-FSEILDTSLKVSWQEPG--EKNGILTGYRISWEEY 58
Query: 684 GNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGPEP 741
+ + + T +T L+A Y++ +AA G G S +++SG P
Sbjct: 59 NRTNTRVTHYLPNVTLEYRVTGLTALTTYTIEVAAMTSKGQGQVSAS---TISSGVPP 113
Score = 47.0 bits (112), Expect = 2e-06
Identities = 24/101 (23%), Positives = 31/101 (30%), Gaps = 17/101 (16%)
Query: 398 PGPPTKPTLVNQTANGLTLAW---SRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATAT 454
PGP + L ++W N I L GY++ T T
Sbjct: 18 PGPVGHLSFSEILDTSLKVSWQEPGEKNGI----LTGYRISWE--------EYNRTNTRV 65
Query: 455 WVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSP 495
+ VT LT TYT V A+ S G S
Sbjct: 66 THYLPNVTLE--YRVTGLTALTTYTIEVAAMTSKGQGQVSA 104
>1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A
{Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1
Length = 205
Score = 81.3 bits (201), Expect = 1e-17
Identities = 30/190 (15%), Positives = 56/190 (29%), Gaps = 22/190 (11%)
Query: 555 MTSTSVKLTWE--------ILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTG 606
+ ++ WE I Y I PAS S V
Sbjct: 16 CQADKAEIHWEQQGDNRSPI--LHYT----IQFNTSFTPASWDAAYEKVPNTDS-SFVVQ 68
Query: 607 LAHYSRYEFFLVPF--FGSVDGKPSN-LRAVRTLECEPSGVPQLTDPVLLNATSVLLKWK 663
++ ++ Y F ++ F G+ PS + T P P ++++ W
Sbjct: 69 MSPWANYTFRVIAFNKIGA--SPPSAHSDSCTTQPDVPFKNPDNVVGQGTEPNNLVISWT 126
Query: 664 PPPVGTHNGVIRTYQII--VGGGNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNR 721
P P HN Y + + N +++ + ++Y + + A N
Sbjct: 127 PMPEIEHNAPNFHYYVSWKRDIPAAAWENNNIFDWRQNNIVIADQPTFVKYLIKVVAIND 186
Query: 722 AGTGPYSRPA 731
G +
Sbjct: 187 RGESNVAAEE 196
Score = 69.7 bits (171), Expect = 1e-13
Identities = 30/223 (13%), Positives = 62/223 (27%), Gaps = 54/223 (24%)
Query: 398 PGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVR 457
P P + A+ + W + S +L Y ++ + A+W
Sbjct: 6 PNAPKLTG-ITCQADKAEIHWEQQGD-NRSPILHYTIQF----------NTSFTPASWDA 53
Query: 458 VATNVP-SPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGK 516
VP + V ++ YTF V A N G S PS SD +
Sbjct: 54 AYEKVPNTDSSFVVQMSPWANYTFRVIAFNKIGASPPSAHSDSCTTQ------------- 100
Query: 517 GIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPMTSTSVKLTWEILNTDY----I 572
+ P + ++ + ++ ++W +
Sbjct: 101 ----PDVPF--------KNPDNVV-----------GQGTEPNNLVISWTPMPEIEHNAPN 137
Query: 573 EGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEF 615
Y+ + P A+ + + ++ + +Y
Sbjct: 138 FHYYVSWKRDIPAAAWENNNI-FDWRQNNIVIADQPTFVKYLI 179
Score = 51.3 bits (123), Expect = 3e-07
Identities = 16/100 (16%), Positives = 34/100 (34%), Gaps = 12/100 (12%)
Query: 398 PGPPTKPTLVNQTANGLTLAWSRNNQI-GSSSLLGYQVEMYSRPLPSSSPSGDTATATWV 456
P N L ++W+ +I ++ Y V + R +P+++ W
Sbjct: 105 FKNPDNVVGQGTEPNNLVISWTPMPEIEHNAPNFHYYVS-WKRDIPAAA---------WE 154
Query: 457 RVA-TNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSP 495
+ + + + + Y V A+N G S +
Sbjct: 155 NNNIFDWRQNNIVIADQPTFVKYLIKVVAINDRGESNVAA 194
Score = 47.4 bits (113), Expect = 6e-06
Identities = 16/93 (17%), Positives = 28/93 (30%), Gaps = 4/93 (4%)
Query: 651 VLLNATSVLLKWKPPPVGTHNGVIRTYQI--IVGGGNNSALINMTVSASTPTLLLTNLSA 708
+ A + W+ + I Y I S +T + + +S
Sbjct: 14 ITCQADKAEIHWEQQG--DNRSPILHYTIQFNTSFTPASWDAAYEKVPNTDSSFVVQMSP 71
Query: 709 GIRYSVSLAATNRAGTGPYSRPALLSLTSGPEP 741
Y+ + A N+ G P S + T P
Sbjct: 72 WANYTFRVIAFNKIGASPPSAHSDSCTTQPDVP 104
>2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor;
2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A
1lwr_A
Length = 209
Score = 81.0 bits (200), Expect = 2e-17
Identities = 25/179 (13%), Positives = 55/179 (30%), Gaps = 6/179 (3%)
Query: 556 TSTSVKLTWEILNTD---YIEGVYI-YSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYS 611
S++ ++ ++ I + + A + GL +
Sbjct: 20 YSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPET 79
Query: 612 RYEFFLVPFFGSVDGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHN 671
Y L G G+ S +T P+L + + S+ + G
Sbjct: 80 TYAVRLAALNGKGLGEISAASEFKTQPVREPSAPKLEGQMGEDGNSIKVNLIKQDDG--G 137
Query: 672 GVIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRP 730
IR Y + ++ + + + + ++L +L Y V + A N+ G +
Sbjct: 138 SPIRHYLVRYRALSSEWKPEIRLPSGSDHVMLKSLDWNAEYEVYVVAENQQGKSKAAHF 196
Score = 64.4 bits (157), Expect = 9e-12
Identities = 21/106 (19%), Positives = 36/106 (33%), Gaps = 9/106 (8%)
Query: 394 PSTYPGPPTKPTL--VNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTA 451
P P+ P++ V ++ + + G +L Y+ E + +
Sbjct: 2 PLAQADTPSSPSIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEW-------RAVGEEVW 54
Query: 452 TATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLS 497
+ W I+T+ L TY + ALN GL S S
Sbjct: 55 HSKWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAAS 100
Score = 63.3 bits (154), Expect = 2e-11
Identities = 20/107 (18%), Positives = 32/107 (29%), Gaps = 14/107 (13%)
Query: 393 EPSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTAT 452
+P P P + + N + + + + G S + Y V R L S
Sbjct: 105 QPVREPSAPKLEGQMGEDGNSIKVNLIKQDD-GGSPIRHYLVRY--RALSS--------- 152
Query: 453 ATWVRVATN-VPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSD 498
W S + + +L Y V A N G S +
Sbjct: 153 -EWKPEIRLPSGSDHVMLKSLDWNAEYEVYVVAENQQGKSKAAHFVF 198
>2dju_A Receptor-type tyrosine-protein phosphatase F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 106
Score = 77.7 bits (192), Expect = 2e-17
Identities = 23/105 (21%), Positives = 35/105 (33%), Gaps = 14/105 (13%)
Query: 394 PSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATA 453
S+ P PP + TA +TL W S + Y ++ T
Sbjct: 4 GSSGPKPPIDLVVTETTATSVTLTWDSG---NSEPVTYYGIQYR-----------AAGTE 49
Query: 454 TWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSD 498
+ V + ++ L+ Y F V A+NS G PS
Sbjct: 50 GPFQEVDGVATTRYSIGGLSPFSEYAFRVLAVNSIGRGPPSEAVR 94
Score = 41.1 bits (97), Expect = 1e-04
Identities = 21/102 (20%), Positives = 31/102 (30%), Gaps = 7/102 (6%)
Query: 640 EPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTP 699
+P +T+ ATSV L W ++ + Y I +T
Sbjct: 9 KPPIDLVVTE---TTATSVTLTWDSG----NSEPVTYYGIQYRAAGTEGPFQEVDGVATT 61
Query: 700 TLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGPEP 741
+ LS Y+ + A N G GP S P
Sbjct: 62 RYSIGGLSPFSEYAFRVLAVNSIGRGPPSEAVRARTGEQSGP 103
Score = 28.4 bits (64), Expect = 3.5
Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Query: 551 EVKPMTSTSVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHY 610
V T+TSV LTW+ N++ + I R + + + + + GL+ +
Sbjct: 15 VVTETTATSVTLTWDSGNSEPVTYYGIQYR---AAGTEGPFQEVDGVATTRYSIGGLSPF 71
Query: 611 SRYEF 615
S Y F
Sbjct: 72 SEYAF 76
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 77.4 bits (191), Expect = 2e-17
Identities = 18/102 (17%), Positives = 34/102 (33%), Gaps = 10/102 (9%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV-DGTN--L 63
+ K+ V G++ EC +W G + +S R + G L
Sbjct: 10 GITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTV--GSSSRFQATRQGRKYIL 67
Query: 64 AIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRG 105
++++ +D G V+ + A L V + G
Sbjct: 68 VVREAAPSDAGEVVFSVRGLTSK-----ASLIVRERSGPSSG 104
Score = 73.6 bits (181), Expect = 5e-16
Identities = 22/102 (21%), Positives = 31/102 (30%), Gaps = 10/102 (9%)
Query: 292 PPPVILFGPANQTLPLRSEARLRCQVRGE---GSVQWWRGEREVGSGPRVNVTGDG---S 345
I + C + E W G + VGS R T G
Sbjct: 7 GHVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYI 66
Query: 346 LVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIG 387
LV+ + D+GE V + ASL + P+ G
Sbjct: 67 LVVREAAPSDAGEVVFSV----RGLTSKASLIVRERSGPSSG 104
Score = 69.7 bits (171), Expect = 1e-14
Identities = 19/95 (20%), Positives = 28/95 (29%), Gaps = 9/95 (9%)
Query: 100 PYIIRGPKDTTVSASSIIVFECSV-GGDAVLTVHWKRLGSAMPE-DRMSVL---PSRSLQ 154
I + K V FEC + A W G + R L
Sbjct: 9 VGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYILV 68
Query: 155 LSDVRLEDAGEYVCEAENAVGKISASATLTVQMAP 189
+ + DAGE V ++ A+L V+
Sbjct: 69 VREAAPSDAGEVVFSVRGL----TSKASLIVRERS 99
Score = 40.5 bits (95), Expect = 2e-04
Identities = 17/108 (15%), Positives = 35/108 (32%), Gaps = 17/108 (15%)
Query: 189 PIVRERPSDLRLEVGRDAVFLCGI-EGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSD 247
+ +R + + G F C + S W + G + R + T
Sbjct: 9 VGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGK--TVGSSSRF-----QATRQ 61
Query: 248 GMN-LLKIQNVSRT-AAPLIILCLGVNAAGSDLARASLTVSGPDPNPP 293
G +L ++ + + A ++ + ++ASL V P
Sbjct: 62 GRKYILVVREAAPSDAG--EVVF----SVRGLTSKASLIVRER-SGPS 102
>2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY
docking, cell adhesion, structural protein; NMR {Homo
sapiens}
Length = 201
Score = 80.9 bits (199), Expect = 2e-17
Identities = 27/192 (14%), Positives = 58/192 (30%), Gaps = 20/192 (10%)
Query: 551 EVKPMTSTSVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHY 610
P S + W +I + R + T+ G + + + GL
Sbjct: 9 TETPSQPNSHPIQWNAPQPSHISKYILRWRPKNSVGRWKEATI--PGHLNSYTIKGLKPG 66
Query: 611 SRYEFFLVPFFGSVDGKPSNLRAVRTLECEPSGVPQLTDPVL--------------LNAT 656
YE L+ + + T P +T + A+
Sbjct: 67 VVYEGQLISIQQYGHQEVTRFDFTTTSTSTPVTSNTVTGETTPFSPLVATSESVTEITAS 126
Query: 657 SVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRYSVSL 716
S ++ W T +G Y++ G + + ++ ++ + +L G +Y V++
Sbjct: 127 SFVVSWVSAS-DTVSGFRVEYELSEEGDE---PQYLDLPSTATSVNIPDLLPGRKYIVNV 182
Query: 717 AATNRAGTGPYS 728
+ G
Sbjct: 183 YQISEDGEQSLI 194
Score = 55.8 bits (134), Expect = 7e-09
Identities = 28/237 (11%), Positives = 57/237 (24%), Gaps = 39/237 (16%)
Query: 400 PPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVA 459
T N + W N S + Y + P +
Sbjct: 4 VEVFITETPSQPNSHPIQW---NAPQPSHISKYILRW--------RPKNSVGRWKEATIP 52
Query: 460 TNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIF 519
++ S T+ L G+ Y + ++ +G + T G F
Sbjct: 53 GHLNS--YTIKGLKPGVVYEGQLISIQQYGHQEVTRFDFTTTSTSTPVTSNTVTGETTPF 110
Query: 520 SENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPMTSTSVKLTWEILNTDYIEGVYIYS 579
S V +T++S ++W + D + G +
Sbjct: 111 SPLVATS-----------------------ESVTEITASSFVVSWVSAS-DTVSGFRVEY 146
Query: 580 RGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVRT 636
+ L + A+ + L +Y + + + T
Sbjct: 147 ELSEEGDEPQYLDL--PSTATSVNIPDLLPGRKYIVNVYQISEDGEQSLILSTSQTT 201
Score = 49.7 bits (118), Expect = 9e-07
Identities = 14/113 (12%), Positives = 34/113 (30%), Gaps = 3/113 (2%)
Query: 655 ATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRYSV 714
S ++W P + I ++ G T+ + + L G+ Y
Sbjct: 15 PNSHPIQWNAPQPSHISKYILRWRPKNSVGR---WKEATIPGHLNSYTIKGLKPGVVYEG 71
Query: 715 SLAATNRAGTGPYSRPALLSLTSGPEPRLEDWASQSGRSRGDGTMETDLTDLT 767
L + + G +R + ++ ++ +T++T
Sbjct: 72 QLISIQQYGHQEVTRFDFTTTSTSTPVTSNTVTGETTPFSPLVATSESVTEIT 124
Score = 47.7 bits (113), Expect = 3e-06
Identities = 26/173 (15%), Positives = 57/173 (32%), Gaps = 17/173 (9%)
Query: 325 WWRGEREVGSGPRVNVTGDG-SLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTN 383
WR + VG + G S + + E + +G + + T+
Sbjct: 36 RWRPKNSVGRWKEATIPGHLNSYTIKGLKPGVVYEGQLISIQQYGHQEVTRFDFTTTSTS 95
Query: 384 PNIGFFRAPEPSTYPGP--PTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPL 441
+ +T P T ++ TA+ ++W S ++ G++VE
Sbjct: 96 TPVTSNTVTGETTPFSPLVATSESVTEITASSFVVSW----VSASDTVSGFRVEY----- 146
Query: 442 PSSSPSGDTATATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPS 494
S + ++ + + S + + +L G Y V ++ G +
Sbjct: 147 ---ELSEEGDEPQYLDLPSTATS--VNIPDLLPGRKYIVNVYQISEDGEQSLI 194
>1x4y_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes
(CDON)binding...; fibronectin type III, FN3; NMR {Mus
musculus} SCOP: b.1.2.1
Length = 114
Score = 77.9 bits (192), Expect = 2e-17
Identities = 20/98 (20%), Positives = 35/98 (35%), Gaps = 3/98 (3%)
Query: 636 TLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQII---VGGGNNSALINM 692
+ P P +T +N T+++LKW P +N I + I N+S
Sbjct: 3 SGSSGPVAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKD 62
Query: 693 TVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRP 730
V +++L Y + + N G +S
Sbjct: 63 MVEGDRYWHSISHLQPETSYDIKMQCFNEGGESEFSNV 100
Score = 44.8 bits (106), Expect = 8e-06
Identities = 15/107 (14%), Positives = 34/107 (31%), Gaps = 12/107 (11%)
Query: 398 PGPPTKPTLVNQTANGLTLAWSRN-NQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWV 456
P + L W ++ + G+ + Y RP S + S +
Sbjct: 9 VAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYI--YYRPTDSDNDS------DYK 60
Query: 457 RVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLR 503
+ ++++L +Y ++ N G S S+ ++
Sbjct: 61 KDMVEGDRYWHSISHLQPETSYDIKMQCFNEGG---ESEFSNVMICE 104
Score = 44.0 bits (104), Expect = 2e-05
Identities = 14/102 (13%), Positives = 30/102 (29%), Gaps = 8/102 (7%)
Query: 548 ELTEVKPMTSTSVKLTWEILNTDYIEG------VYIYSRGLDPPASVAMLTVLHAGEASG 601
+T + T++ L W + +Y D + V G+
Sbjct: 13 YITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMV--EGDRYW 70
Query: 602 FLVTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVRTLECEPSG 643
++ L + Y+ + F + + SN+ T
Sbjct: 71 HSISHLQPETSYDIKMQCFNEGGESEFSNVMICETKARSGPS 112
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 106
Score = 77.4 bits (191), Expect = 2e-17
Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 7/98 (7%)
Query: 99 KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAM-PEDRMSVLPS---RSLQ 154
+ +++ D TV A+ VF+C V + V T W + G + P R+++ L
Sbjct: 8 QLEVLQDIADLTVKAAEQAVFKCEVSDEKV-TGKWYKNGVEVRPSKRITISHVGRFHKLV 66
Query: 155 LSDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVR 192
+ DVR ED G+Y + +S SA L +
Sbjct: 67 IDDVRPEDEGDYTFVPDG--YALSLSAKLNFLEIKVSG 102
Score = 74.7 bits (184), Expect = 2e-16
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Query: 293 PPVILFGPANQTLPLRSEARLRCQVRGE-GSVQWWRGEREVGSGPRVNVTGDG---SLVL 348
+L A+ T+ +A +C+V E + +W++ EV R+ ++ G LV+
Sbjct: 8 QLEVLQDIADLTVKAAEQAVFKCEVSDEKVTGKWYKNGVEVRPSKRITISHVGRFHKLVI 67
Query: 349 TDVTKEDSGEYTCVVKSPHGSAS 371
DV ED G+YT V S S
Sbjct: 68 DDVRPEDEGDYTFVPDGYALSLS 90
Score = 69.0 bits (169), Expect = 2e-14
Identities = 27/99 (27%), Positives = 35/99 (35%), Gaps = 10/99 (10%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV-DGTN--L 63
E V A + A+ +C + T W KNG + SKR+ + G L
Sbjct: 10 EVLQDIADLTVKAAEQAVFKC--EVSDEKVTGKWYKNGVEV--RPSKRITISHVGRFHKL 65
Query: 64 AIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYI 102
I D R D+G Y V A S A L L
Sbjct: 66 VIDDVRPEDEGDYTFVPDGYAL---SLSAKLNFLEIKVS 101
Score = 42.0 bits (99), Expect = 6e-05
Identities = 21/113 (18%), Positives = 32/113 (28%), Gaps = 14/113 (12%)
Query: 184 TVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAE 243
V + +DL ++ AVF C + W G + P R+
Sbjct: 4 GSSGQLEVLQDIADLTVKAAEQAVFKCEVSDEKVTGK-WYKNGVE--VRPSKRI-----T 55
Query: 244 ITSDGMN-LLKIQNVSRT-AAPLIILCLGVNAAGSDLARASLTVSGPDPNPPP 294
I+ G L I +V + A S A L + P
Sbjct: 56 ISHVGRFHKLVIDDVRPEDEG--DYTFVPDGYALS--LSAKLNFLEIKVSGPS 104
>1x5l_A Ephrin type-A receptor 8; FN3 domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 111
Score = 77.4 bits (191), Expect = 3e-17
Identities = 29/108 (26%), Positives = 42/108 (38%), Gaps = 4/108 (3%)
Query: 634 VRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMT 693
+ + PS V + TSV L W+ P NG+I Y+I + T
Sbjct: 4 GSSGQAAPSQVVVIR-QERAGQTSVSLLWQEPE--QPNGIILEYEIKYYEKDKEMQSYST 60
Query: 694 VSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGPEP 741
+ A T ++ L G RY + A AG G +S A+ T P
Sbjct: 61 LKAVTTRATVSGLKPGTRYVFQVRARTSAGCGRFS-QAMEVETGKPSG 107
Score = 50.0 bits (120), Expect = 1e-07
Identities = 21/102 (20%), Positives = 30/102 (29%), Gaps = 20/102 (19%)
Query: 398 PGPPTKPTLVNQTANGLTLAWS----RNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATA 453
P ++L W N I L Y+++ Y D
Sbjct: 11 PSQVVVIRQERAGQTSVSLLWQEPEQPNGII-----LEYEIKYYE---------KDKEMQ 56
Query: 454 TWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSP 495
++ + TV+ L G Y F VRA S G S
Sbjct: 57 SYSTLKAVTTR--ATVSGLKPGTRYVFQVRARTSAGCGRFSQ 96
>3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural
protein; 1.65A {Homo sapiens}
Length = 197
Score = 79.7 bits (197), Expect = 4e-17
Identities = 43/177 (24%), Positives = 68/177 (38%), Gaps = 28/177 (15%)
Query: 330 REVGSGPRVNVTGDG---SLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNI 386
RE V + S + + + S + + ++ +G + + +
Sbjct: 45 RESTRKAYSTVATNCHKTSWKVDQLQEGCSYYFRVLAENEYGIGLPAETAESVKASER-- 102
Query: 387 GFFRAPEPSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSP 446
P PP K TL++ T N ++L+W + G S +LGY VEM
Sbjct: 103 -----------PLPPGKITLMDVTRNSVSLSWEKPEHDGGSRILGYIVEM--------QT 143
Query: 447 SGDTATATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLR 503
G W AT V T+T L G Y+F V A N G+S P LS ++ +
Sbjct: 144 KGSD---KWATCAT-VKVTEATITGLIQGEEYSFRVSAQNEKGISDPRQLSVPVIAK 196
Score = 76.6 bits (189), Expect = 4e-16
Identities = 43/228 (18%), Positives = 66/228 (28%), Gaps = 59/228 (25%)
Query: 391 APEPSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDT 450
A + PGPP + T +TL W G S + Y VE ++
Sbjct: 2 AMDT---PGPPQDLKVKEVTKTSVTLTWDPPLLDGGSKIKNYIVEKR-----------ES 47
Query: 451 ATATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGI 510
+ VATN V L G +Y F V A N +G+ P+ ++ +
Sbjct: 48 TRKAYSTVATNCHKTSWKVDQLQEGCSYYFRVLAENEYGIGLPAETAESVKASER----- 102
Query: 511 FSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPMTSTSVKLTWEILNTD 570
P + + +T SV L+WE D
Sbjct: 103 -------------PL---------PPGKIT-----------LMDVTRNSVSLSWEKPEHD 129
Query: 571 Y---IEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEF 615
I G + + + + +TGL Y F
Sbjct: 130 GGSRILGYIVEMQ----TKGSDKWATCATVKVTEATITGLIQGEEYSF 173
Score = 65.8 bits (161), Expect = 3e-12
Identities = 44/195 (22%), Positives = 64/195 (32%), Gaps = 33/195 (16%)
Query: 551 EVKPMTSTSVKLTWE---------ILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASG 601
+VK +T TSV LTW+ I +YI + R A TV +
Sbjct: 13 KVKEVTKTSVTLTWDPPLLDGGSKI--KNYI----VEKR---ESTRKAYSTVATNCHKTS 63
Query: 602 FLVTGLAHYSRYEFFLVPF--FGSVDGKPSNLRAVRTLECEPS--GVPQLTDPVLLNATS 657
+ V L Y F ++ +G G P+ P G L D + S
Sbjct: 64 WKVDQLQEGCSYYFRVLAENEYGI--GLPAETAESVKASERPLPPGKITLMD---VTRNS 118
Query: 658 VLLKWKPPPVGTHNGVIRTYQI--IVGGGNNSALINMTVSASTPTLLLTNLSAGIRYSVS 715
V L W+ P I Y + G + A + +T L G YS
Sbjct: 119 VSLSWEKPE-HDGGSRILGYIVEMQTKGSDKWATCA---TVKVTEATITGLIQGEEYSFR 174
Query: 716 LAATNRAGTGPYSRP 730
++A N G +
Sbjct: 175 VSAQNEKGISDPRQL 189
Score = 48.5 bits (116), Expect = 2e-06
Identities = 18/77 (23%), Positives = 27/77 (35%), Gaps = 1/77 (1%)
Query: 655 ATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRYSV 714
TSV L W PP + I+ Y + A + + + + L G Y
Sbjct: 19 KTSVTLTWDPP-LLDGGSKIKNYIVEKRESTRKAYSTVATNCHKTSWKVDQLQEGCSYYF 77
Query: 715 SLAATNRAGTGPYSRPA 731
+ A N G G + A
Sbjct: 78 RVLAENEYGIGLPAETA 94
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like
protein 3, nephrin- like 2, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 77.2 bits (190), Expect = 5e-17
Identities = 30/121 (24%), Positives = 40/121 (33%), Gaps = 2/121 (1%)
Query: 175 GKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPST-FWMLEGNRSLIYP 233
G +S TLTV PI+ G C I +PPP W + N
Sbjct: 1 GSSGSSGTLTVNGPPIIS-STQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGT 59
Query: 234 GDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPP 293
R ++ L I N+ R I C N+ GSD L G + + P
Sbjct: 60 SGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSEMSGP 119
Query: 294 P 294
Sbjct: 120 S 120
Score = 63.4 bits (154), Expect = 3e-12
Identities = 19/114 (16%), Positives = 35/114 (30%), Gaps = 13/114 (11%)
Query: 89 STDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGD-AVLTVHWKRLGSAM---PEDR 144
+ L V P II + +C + + W + + R
Sbjct: 4 GSSGTLTVNGPP-IISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGR 62
Query: 145 MSVLPSR-------SLQLSDVRLED-AGEYVCEAENAVGKISASATLTVQMAPI 190
+V +L +S++ D Y C A N+ G + L Q + +
Sbjct: 63 YTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSEM 116
Score = 61.4 bits (149), Expect = 1e-11
Identities = 24/123 (19%), Positives = 46/123 (37%), Gaps = 19/123 (15%)
Query: 275 GSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRGE---GSVQWWRGERE 331
GS + +LTV+GP P+I Q + +++C +R + W E
Sbjct: 1 GSSGSSGTLTVNGP-----PIIS-STQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENV 54
Query: 332 VGSGPRVNVTGD---------GSLVLTDVTKED-SGEYTCVVKSPHGSASWSASLRFESP 381
+ SG T + +L ++++ + D Y C + GS + L+ +
Sbjct: 55 LESGTSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGS 114
Query: 382 TNP 384
Sbjct: 115 EMS 117
Score = 59.1 bits (143), Expect = 1e-10
Identities = 20/105 (19%), Positives = 38/105 (36%), Gaps = 13/105 (12%)
Query: 11 QPKSQRVAAGDTALLECGPPRGHPEPTLV-WKKNGHPIDFENSKRLRLVDGTN------- 62
++Q G+ ++C R P P + W + ++ S R + +
Sbjct: 19 STQTQHALHGEKGQIKC-FIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVIST 77
Query: 63 LAIQDSRKTDDGR-YQCVVKNVAGTRESTDAVLRVLVKPYIIRGP 106
L I + + D Y C N G S ++R+ + + GP
Sbjct: 78 LTISNIVRADFQTIYNCTAWNSFG---SDTEIIRLKEQGSEMSGP 119
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C,
C-protein, skeletal muscle fast-isoform, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 77.0 bits (190), Expect = 5e-17
Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 2/89 (2%)
Query: 12 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKT 71
++ G+ L P +G P P +VW K G P+D T ++ + ++
Sbjct: 31 RQTYIRKVGEQLNLVV-PFQGKPRPQVVWTKGGAPLDTSRVHVRTSDFDTVFFVRQAARS 89
Query: 72 DDGRYQCVVKNVAGTRESTDAVLRVLVKP 100
D G Y+ V+ ++ +RV+ K
Sbjct: 90 DSGEYELSVQIENMK-DTATIRIRVVEKA 117
Score = 66.3 bits (162), Expect = 3e-13
Identities = 18/114 (15%), Positives = 33/114 (28%), Gaps = 6/114 (5%)
Query: 82 NVAGTRESTDAVLRVLVKPYII---RGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGS 138
+GT + + P I + + G V W + G+
Sbjct: 4 GSSGTLAQPVTIREIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGA 63
Query: 139 AMPEDRMSVLPSR---SLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAP 189
+ R+ V S + D+GEY + K +A+ + V
Sbjct: 64 PLDTSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVVEKA 117
Score = 56.2 bits (136), Expect = 1e-09
Identities = 23/116 (19%), Positives = 44/116 (37%), Gaps = 13/116 (11%)
Query: 270 GVNAAGSDLARASLTVSGPDPNPPPVILFGPAN-QTLPLR--SEARLRCQVRGE--GSVQ 324
++G+ + V+ + PP I QT + + L +G+ V
Sbjct: 2 SSGSSGT----LAQPVTIREIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVV 57
Query: 325 WWRGEREVGSGPRVNVT---GDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLR 377
W +G + + RV+V D + + DSGEY V+ + + + +R
Sbjct: 58 WTKGGAPLDTS-RVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIR 112
Score = 47.0 bits (112), Expect = 2e-06
Identities = 21/126 (16%), Positives = 38/126 (30%), Gaps = 24/126 (19%)
Query: 170 AENAVGKISASATLTVQMAP----IVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLE 225
+ + G ++ T+ P + R +VG + +G P P W
Sbjct: 2 SSGSSGTLAQPVTIREIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKG 61
Query: 226 GNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSR------TAAPLIILCLGVNAAGSDLA 279
G L RV +++ TSD + ++ +R D A
Sbjct: 62 G-APL--DTSRV-HVR---TSDFDTVFFVRQAARSDSGEYE-------LSVQIENMKDTA 107
Query: 280 RASLTV 285
+ V
Sbjct: 108 TIRIRV 113
>2crz_A Fibronectin type-III domain containing protein 3A; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 110
Score = 76.6 bits (189), Expect = 6e-17
Identities = 30/113 (26%), Positives = 38/113 (33%), Gaps = 13/113 (11%)
Query: 394 PSTYPGPPTKPTLVNQ-TANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTAT 452
S PGP P L + A + L W G S + Y VEM
Sbjct: 5 SSGPPGPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYSVEMS-----------PIEK 53
Query: 453 ATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGT 505
V TV++L G TY+F +RA N G S D G+
Sbjct: 54 DEPREVYQ-GSEVECTVSSLLPGKTYSFRLRAANKMGFGPFSEKCDITTAPGS 105
Score = 41.6 bits (98), Expect = 1e-04
Identities = 22/90 (24%), Positives = 34/90 (37%), Gaps = 4/90 (4%)
Query: 641 PSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPT 700
P P+L A + L+W PP V I Y + + + +
Sbjct: 11 PCLPPRLQGRP--KAKEIQLRWGPPLV-DGGSPISCYSVEMSPIEKDEPREVYQGSEV-E 66
Query: 701 LLLTNLSAGIRYSVSLAATNRAGTGPYSRP 730
+++L G YS L A N+ G GP+S
Sbjct: 67 CTVSSLLPGKTYSFRLRAANKMGFGPFSEK 96
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative
splicing, cell adhesion, cell membrane, glycoprotein,
HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R
3epc_R* 3epd_R* 3epf_R*
Length = 221
Score = 80.1 bits (197), Expect = 6e-17
Identities = 41/214 (19%), Positives = 64/214 (29%), Gaps = 33/214 (15%)
Query: 11 QPKSQRVAAGDTALLEC---GPPRGHPEPTLV-WKKNGHP-----------IDFENSKRL 55
P GD+ L C P + + W ++G + SKRL
Sbjct: 5 APTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRL 64
Query: 56 RLV--------DGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPK 107
V +L + R D+G Y C+ S D LRVL KP +
Sbjct: 65 EFVAARLGAELRDASLRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQ 124
Query: 108 DTTVSASSIIVFEC-SVGGDAVLTVHWKRLGSAMPEDRMSVLP-------SRSLQLSDVR 159
++ + + C S GG + W MP+ + L
Sbjct: 125 KVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPQTSQVPGFLSGTVTVTSLWILVPSS 184
Query: 160 LEDAGEYVCEAENA--VGKISASATLTVQMAPIV 191
D + C+ E+ + +LTV
Sbjct: 185 QVDGKQVTCKVEHESFEKPQLLTVSLTVYYPHHH 218
Score = 59.3 bits (143), Expect = 6e-10
Identities = 27/156 (17%), Positives = 45/156 (28%), Gaps = 29/156 (18%)
Query: 102 IIRGPKDTTVSASSIIVFECSVGG-----DAVLTVHWKRLGSA--------------MPE 142
+++ P + C + V + W R G +
Sbjct: 2 VVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSES 61
Query: 143 DRMSVLPSR--------SLQLSDVRLEDAGEYVCEAENA-VGKISASATLTVQMAPIVRE 193
R+ + +R SL++ +R+ED G Y C G S L V P
Sbjct: 62 KRLEFVAARLGAELRDASLRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWLRVLAKPQNTA 121
Query: 194 RPSDLRLEVGRDAVFLC-GIEGSPPPSTFWMLEGNR 228
++L + C G PP W +
Sbjct: 122 EVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGG 157
Score = 48.5 bits (115), Expect = 3e-06
Identities = 12/104 (11%), Positives = 31/104 (29%), Gaps = 7/104 (6%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGT----- 61
+ + + ++ + C G P + W + + + + GT
Sbjct: 118 QNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPQTSQVP-GFLSGTVTVTS 176
Query: 62 NLAIQDSRKTDDGRYQCVVKNVAGTRE-STDAVLRVLVKPYIIR 104
+ S + D + C V++ + + L V +
Sbjct: 177 LWILVPSSQVDGKQVTCKVEHESFEKPQLLTVSLTVYYPHHHHH 220
Score = 48.2 bits (114), Expect = 4e-06
Identities = 42/221 (19%), Positives = 59/221 (26%), Gaps = 50/221 (22%)
Query: 295 VILFGPANQTLPLRSEARLRCQVRGE-------GSVQW-------------WRGEREVGS 334
V++ P L L C ++ + W
Sbjct: 1 VVVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSE 60
Query: 335 GPRVNVT--------GDGSLVLTDVTKEDSGEYTC-VVKSPHGSASWSASLR-FESPTNP 384
R+ D SL + + ED G YTC V P GS S LR P N
Sbjct: 61 SKRLEFVAARLGAELRDASLRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWLRVLAKPQNT 120
Query: 385 NIGFFRAPEPSTYPGPPTKPTLVNQTANG---LTLAWSRNNQ--IGSSSLLG-----YQV 434
P + G + W + +S + G V
Sbjct: 121 AEV------QKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPQTSQVPGFLSGTVTV 174
Query: 435 EMYSRPLPSSSPSGDTATATWVRVA-TNVPSPILTVTNLTV 474
+PSS G T +V + P L +LTV
Sbjct: 175 TSLWILVPSSQVDGKQVT---CKVEHESFEKPQLLTVSLTV 212
Score = 47.0 bits (111), Expect = 8e-06
Identities = 29/216 (13%), Positives = 57/216 (26%), Gaps = 31/216 (14%)
Query: 190 IVRERPSDLRLEVGRDAVFLCGIEGSPPPST-----FWMLEGNRSLIY-----------P 233
+V + P+ + +G C ++ T W G +
Sbjct: 1 VVVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSE 60
Query: 234 GDRVDNIQAEITSDGMNL-LKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNP 292
R++ + A + ++ + L++ + GS L V N
Sbjct: 61 SKRLEFVAARLGAELRDASLRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWLRVLAKPQNT 120
Query: 293 PPVILFGPANQTLPLRSEARLRCQVRG---EGSVQWWRGEREVGSGPRVNVTGDG----- 344
V L RC G + W + +V G
Sbjct: 121 AEVQKV-----QLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPQTSQVPGFLSGTVTVT 175
Query: 345 SLVLTDVTKEDSG-EYTCVVKSPHGSASWSASLRFE 379
SL + + + G + TC V+ ++
Sbjct: 176 SLWILVPSSQVDGKQVTCKVEHESFEKPQLLTVSLT 211
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo sapiens}
Length = 97
Score = 75.8 bits (187), Expect = 7e-17
Identities = 19/94 (20%), Positives = 37/94 (39%), Gaps = 6/94 (6%)
Query: 294 PVILFGPANQTLPLRSEARLRCQVRGE---GSVQWWRGEREVGSGPRVNVTGDG---SLV 347
++ + + C++ V W+ G R++ + + +T + L
Sbjct: 2 AMVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILY 61
Query: 348 LTDVTKEDSGEYTCVVKSPHGSASWSASLRFESP 381
+ D+TK D G Y C V + +G S A L +
Sbjct: 62 VKDITKLDDGTYRCKVVNDYGEDSSYAELFVKGV 95
Score = 70.0 bits (172), Expect = 8e-15
Identities = 16/90 (17%), Positives = 29/90 (32%), Gaps = 5/90 (5%)
Query: 102 IIRGPKDTTVSASSIIVFECSV-GGDAVLTVHWKRLGSAMPED---RMSVLPSR-SLQLS 156
+ + + C + D V W + ++ L +
Sbjct: 4 VSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVK 63
Query: 157 DVRLEDAGEYVCEAENAVGKISASATLTVQ 186
D+ D G Y C+ N G+ S+ A L V+
Sbjct: 64 DITKLDDGTYRCKVVNDYGEDSSYAELFVK 93
Score = 69.7 bits (171), Expect = 1e-14
Identities = 26/90 (28%), Positives = 35/90 (38%), Gaps = 8/90 (8%)
Query: 11 QPKSQRVAAGDTALLECGPPRGHPEPTLV-WKKNGHPIDFENSKRLRLV--DGT-NLAIQ 66
Q G C + + T V W + ENS++ + DG L ++
Sbjct: 7 QIMHAVGEEGGHVKYVC-KIENYDQSTQVTWYFGVRQL--ENSEKYEITYEDGVAILYVK 63
Query: 67 DSRKTDDGRYQCVVKNVAGTRESTDAVLRV 96
D K DDG Y+C V N G S A L V
Sbjct: 64 DITKLDDGTYRCKVVNDYGEDSSY-AELFV 92
Score = 51.6 bits (124), Expect = 3e-08
Identities = 21/104 (20%), Positives = 39/104 (37%), Gaps = 12/104 (11%)
Query: 188 APIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTF-WMLEGNRSLIYPGDRVDNIQAEITS 246
+V + E G ++C IE + W + ++ EIT
Sbjct: 1 GAMVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVR--QLENSEKY-----EITY 53
Query: 247 D-GMNLLKIQNVSRT-AAPLIILCLGVNAAGSDLARASLTVSGP 288
+ G+ +L ++++++ C VN G D + A L V G
Sbjct: 54 EDGVAILYVKDITKLDDG--TYRCKVVNDYGEDSSYAELFVKGV 95
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 103
Score = 75.8 bits (187), Expect = 8e-17
Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Query: 292 PPPVILFGPANQTLPLRSEARLRCQVRGEGS-VQWWRGEREVGSGPRVNVTGDG---SLV 347
P I+ +Q + + LRC++ G+ V W + + + + +V +G LV
Sbjct: 7 GPAAIIKPLEDQWVAPGEDVELRCELSRAGTPVHWLKDRKAIRKSQKYDVVCEGTMAMLV 66
Query: 348 LTDVTKEDSGEYTCVVKSPHGSAS 371
+ + +D+GEYTC V++ +AS
Sbjct: 67 IRGASLKDAGEYTCEVEASKSTAS 90
Score = 68.1 bits (167), Expect = 5e-14
Identities = 23/94 (24%), Positives = 37/94 (39%), Gaps = 9/94 (9%)
Query: 100 PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSA-MPEDRMSVLPS---RSLQL 155
II+ +D V+ + C + VHW + A + V+ L +
Sbjct: 9 AAIIKPLEDQWVAPGEDVELRCELSRAGT-PVHWLKDRKAIRKSQKYDVVCEGTMAMLVI 67
Query: 156 SDVRLEDAGEYVCEAENAVGKISASATLTVQMAP 189
L+DAGEY CE E + +A+L V+
Sbjct: 68 RGASLKDAGEYTCEVEASKS----TASLHVEEKA 97
Score = 65.8 bits (161), Expect = 3e-13
Identities = 25/100 (25%), Positives = 36/100 (36%), Gaps = 18/100 (18%)
Query: 7 EFRVQPKSQRVAAGDTALLEC---GPPRGHPEPTLVWKKNGHPIDFENSKRLRLV-DGTN 62
+ Q VA G+ L C + W K+ I S++ +V +GT
Sbjct: 10 AIIKPLEDQWVAPGEDVELRCELSRAG-----TPVHWLKDRKAI--RKSQKYDVVCEGTM 62
Query: 63 --LAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKP 100
L I+ + D G Y C V+ T A L V K
Sbjct: 63 AMLVIRGASLKDAGEYTCEVEASKST-----ASLHVEEKA 97
Score = 41.1 bits (97), Expect = 1e-04
Identities = 19/108 (17%), Positives = 35/108 (32%), Gaps = 17/108 (15%)
Query: 189 PIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDG 248
+ + D + G D C + + P W+ + I + ++ +G
Sbjct: 9 AAIIKPLEDQWVAPGEDVELRCELSRAGTPVH-WLKDR--KAIRKSQKY-----DVVCEG 60
Query: 249 -MNLLKIQNVSRT-AAPLIILCLGVNAAGSDLARASLTVSGPDPNPPP 294
M +L I+ S A C + + ASL V + P
Sbjct: 61 TMAMLVIRGASLKDAG--EYTCEVEASKST----ASLHVEEK-ASGPS 101
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} PDB: 2yz8_A
Length = 103
Score = 75.8 bits (187), Expect = 9e-17
Identities = 23/102 (22%), Positives = 42/102 (41%), Gaps = 9/102 (8%)
Query: 288 PDPNPPPVILFGPANQTLPLRSEARLRCQVRGEGS-VQWWRGEREVGSGPRVNVTGDG-- 344
+ P + + A LRC + + V+W G + G + ++ +G
Sbjct: 3 SGSSGPVRFQEALKDLEVLEGGAATLRCVLSSVAAPVKWCYGNNVLRPGDKYSLRQEGAM 62
Query: 345 -SLVLTDVTKEDSGEYTCVVKSPHGSASWSASLR-FESPTNP 384
LV+ ++ +DSG Y+C G + SA+L P+ P
Sbjct: 63 LELVVRNLRPQDSGRYSCSF----GDQTTSATLTVTALPSGP 100
Score = 71.6 bits (176), Expect = 2e-15
Identities = 24/94 (25%), Positives = 34/94 (36%), Gaps = 9/94 (9%)
Query: 100 PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSA-MPEDRMSVLPS---RSLQL 155
KD V C + A V W + P D+ S+ L +
Sbjct: 9 VRFQEALKDLEVLEGGAATLRCVLSSVAA-PVKWCYGNNVLRPGDKYSLRQEGAMLELVV 67
Query: 156 SDVRLEDAGEYVCEAENAVGKISASATLTVQMAP 189
++R +D+G Y C G + SATLTV P
Sbjct: 68 RNLRPQDSGRYSCSF----GDQTTSATLTVTALP 97
Score = 64.7 bits (158), Expect = 6e-13
Identities = 22/100 (22%), Positives = 34/100 (34%), Gaps = 18/100 (18%)
Query: 7 EFRVQPKSQRVAAGDTALLEC---GPPRGHPEPTLVWKKNGHPIDFENSKRLRLV-DGTN 62
F+ K V G A L C + W + + + L +G
Sbjct: 10 RFQEALKDLEVLEGGAATLRCVLSSVA-----APVKWCYGNNVL--RPGDKYSLRQEGAM 62
Query: 63 --LAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKP 100
L +++ R D GRY C G + ++ A L V P
Sbjct: 63 LELVVRNLRPQDSGRYSC----SFGDQTTS-ATLTVTALP 97
Score = 45.8 bits (109), Expect = 3e-06
Identities = 24/108 (22%), Positives = 40/108 (37%), Gaps = 17/108 (15%)
Query: 188 APIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSD 247
+E DL + G A C + P W N ++ PGD+ + +
Sbjct: 8 PVRFQEALKDLEVLEGGAATLRCVLSSVAAPVK-WCYGNN--VLRPGDKY-----SLRQE 59
Query: 248 GMNL-LKIQNVSRT-AAPLIILCLGVNAAGSDLARASLTVSGPDPNPP 293
G L L ++N+ + C + G A+LTV+ P+ P
Sbjct: 60 GAMLELVVRNLRPQDSG--RYSC----SFGDQTTSATLTVTAL-PSGP 100
>1ujt_A KIAA1568 protein; fibronectin type III domain, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 120
Score = 76.1 bits (187), Expect = 1e-16
Identities = 27/113 (23%), Positives = 44/113 (38%), Gaps = 6/113 (5%)
Query: 529 GESLRRARQHLQEGGGSLIELTEVKPMTSTSVKLTWEILN-TDYIEGVYIYSR--GLDPP 585
G S R+ ++ L G L+ L +T T+V++TW + +I+G + R
Sbjct: 4 GSSGRQVQKEL---GDVLVRLHNPVVLTPTTVQVTWTVDRQPQFIQGYRVMYRQTSGLQA 60
Query: 586 ASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVRTLE 638
S ++ L YE + P+F G S + VRT E
Sbjct: 61 TSSWQNLDAKVPTERSAVLVNLKKGVTYEIKVRPYFNEFQGMDSESKTVRTTE 113
Score = 53.0 bits (127), Expect = 1e-08
Identities = 21/103 (20%), Positives = 39/103 (37%), Gaps = 10/103 (9%)
Query: 644 VPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQII-----VGGGNNSALINMTVSAST 698
+ +L +PV+L T+V + W I+ Y+++ +S +
Sbjct: 18 LVRLHNPVVLTPTTVQVTWTVDR---QPQFIQGYRVMYRQTSGLQATSSWQNLDAKVPTE 74
Query: 699 PTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLT--SGP 739
+ +L NL G+ Y + + G S + T SGP
Sbjct: 75 RSAVLVNLKKGVTYEIKVRPYFNEFQGMDSESKTVRTTEESGP 117
Score = 39.9 bits (93), Expect = 5e-04
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 12/94 (12%)
Query: 403 KPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNV 462
P ++ T + + W+ + Q + GY+V MY R SG AT++W + V
Sbjct: 23 NPVVLTPTT--VQVTWTVDRQ--PQFIQGYRV-MY-RQT-----SGLQATSSWQNLDAKV 71
Query: 463 PSPI-LTVTNLTVGLTYTFLVRALNSHGLSAPSP 495
P+ + NL G+TY VR + S
Sbjct: 72 PTERSAVLVNLKKGVTYEIKVRPYFNEFQGMDSE 105
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3bp5_B 3rnq_B 3bov_A 3rnk_B
Length = 202
Score = 78.2 bits (192), Expect = 2e-16
Identities = 33/197 (16%), Positives = 60/197 (30%), Gaps = 19/197 (9%)
Query: 8 FRVQ--PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFEN----SKRLRLVDGT 61
F V + V G + LEC L + + S+R L++
Sbjct: 3 FTVTAPKEVYTVDVGSSVSLECDFD-RRECTELEGIRASLQKVENDTSLQSERATLLEEQ 61
Query: 62 ------NLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASS 115
I + D G+Y+C+V A ++V I + V +
Sbjct: 62 LPLGKALFHIPSVQVRDSGQYRCLVICGAAWDYKY-LTVKVKASYMRID-TRILEVPGTG 119
Query: 116 IIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLS---DVRLEDAGEYVCEAEN 172
+ C G + V W+ + P Q++ ++ + + + C N
Sbjct: 120 EVQLTCQARGYPLAEVSWQNVSVPANTS-HIRTPEGLYQVTSVLRLKPQPSRNFSCMFWN 178
Query: 173 AVGKISASATLTVQMAP 189
A K SA +
Sbjct: 179 AHMKELTSAIIDPLSRM 195
Score = 77.0 bits (189), Expect = 5e-16
Identities = 32/206 (15%), Positives = 58/206 (28%), Gaps = 24/206 (11%)
Query: 103 IRGPKDT-TVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSR---------- 151
+ PK+ TV S + EC + R E+ S+ R
Sbjct: 5 VTAPKEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPL 64
Query: 152 ---SLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVF 208
+ V++ D+G+Y C T+ V+ + + + L + +
Sbjct: 65 GKALFHIPSVQVRDSGQYRCLVICGAAWDYKYLTVKVKASYMRID-TRILEVPGTGEVQL 123
Query: 209 LCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILC 268
C G P W + N T +G+ + + C
Sbjct: 124 TCQARGYPLAEVSWQNVSVPA---------NTSHIRTPEGLYQVTSVLRLKPQPSRNFSC 174
Query: 269 LGVNAAGSDLARASLTVSGPDPNPPP 294
+ NA +L A + P
Sbjct: 175 MFWNAHMKELTSAIIDPLSRMEPKVP 200
Score = 66.2 bits (161), Expect = 2e-12
Identities = 34/194 (17%), Positives = 56/194 (28%), Gaps = 17/194 (8%)
Query: 201 EVGRDAVFLCGIEGSPPPSTFWM-----LEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQ 255
+VG C + + N + + R + E G L I
Sbjct: 15 DVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSE-RA-TLLEEQLPLGKALFHIP 72
Query: 256 NVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRC 315
+V + CL + A D ++ V IL P E +L C
Sbjct: 73 SVQVRDS-GQYRCLVICGAAWDYKYLTVKVKASYMRIDTRILEVPGT------GEVQLTC 125
Query: 316 QVRG--EGSVQWWRGEREVGSGPRVNVTGDGSLVLT-DVTKEDSGEYTCVVKSPHGSASW 372
Q RG V W + G + + + S ++C+ + H
Sbjct: 126 QARGYPLAEVSWQNVSVPANTSHIRTPEGLYQVTSVLRLKPQPSRNFSCMFWNAHMKELT 185
Query: 373 SASLRFESPTNPNI 386
SA + S P +
Sbjct: 186 SAIIDPLSRMEPKV 199
Score = 55.4 bits (133), Expect = 1e-08
Identities = 23/164 (14%), Positives = 47/164 (28%), Gaps = 35/164 (21%)
Query: 284 TVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRGEGS--VQWWRGEREVGSG------ 335
TV+ P T+ + S L C ++ R +
Sbjct: 4 TVTAP-----------KEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQS 52
Query: 336 PRVNV------TGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFF 389
R + G + V DSG+Y C+V +++ ++ +
Sbjct: 53 ERATLLEEQLPLGKALFHIPSVQVRDSGQYRCLVICGAAWDYKYLTVKVKAS-------Y 105
Query: 390 RAPEPSTYPGPPTKPTLVNQTANGL---TLAWSRNNQIGSSSLL 430
+ P T + A G ++W + ++S +
Sbjct: 106 MRIDTRILEVPGTGEVQLTCQARGYPLAEVSWQNVSVPANTSHI 149
>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera
phosphorylation, transmembrane, tyrosine-protein kinase,
glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB:
2x10_A* 2x11_A 3mx0_A* 3mbw_A*
Length = 536
Score = 82.1 bits (202), Expect = 3e-16
Identities = 29/187 (15%), Positives = 54/187 (28%), Gaps = 15/187 (8%)
Query: 555 MTSTSVKLTWEI---LNTDYIEGVYIYSRGLDPPAS--------VAMLTVLHAGEASGFL 603
V+L W + P + V H +
Sbjct: 344 GMGAKVELRWTPPQDSGGREDIVYSVTCEQCWPESGECGPCEASVRYSEPPHGLTRTSVT 403
Query: 604 VTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWK 663
V+ L + Y F + G S ++ P + TS+ + W
Sbjct: 404 VSDLEPHMNYTFTVEARNGVSGLVTSRSFRTASVS-INQTEPPKVRLEGRSTTSLSVSWS 462
Query: 664 PPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAG 723
PP + Y++ +S N+ + ++ L +L+ Y V + A + G
Sbjct: 463 IPP--PQQSRVWKYEVTYRKKGDSNSYNVRRTEGF-SVTLDDLAPDTTYLVQVQALTQEG 519
Query: 724 TGPYSRP 730
G S+
Sbjct: 520 QGAGSKV 526
Score = 75.2 bits (184), Expect = 4e-14
Identities = 63/376 (16%), Positives = 102/376 (27%), Gaps = 60/376 (15%)
Query: 277 DLARASLTVSGPDPNPPPVILFG--PANQTLPLRSEARLRCQVRGEGSVQWWRGEREVGS 334
LA T++G D + P E R+ C V GE V G+ +
Sbjct: 212 GLAHFPETIAGSDAPSLATVAGTCVDHAVVPPGGEEPRMHCAVDGEWLVP--IGQCLCQA 269
Query: 335 GPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPE- 393
G + K ++ E C+ H S + + GFFRAP+
Sbjct: 270 GYEKVEDACQA-CSPGFFKFEASESPCLECPEHTLPSPEGA----TSCECEEGFFRAPQD 324
Query: 394 ----PSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGD 449
P T P + L W+ G + Y V S
Sbjct: 325 PASMPCTRPPSAPHYLTAVGMGAKVELRWTPPQDSGGREDIVYSVTCEQCWPESGECGPC 384
Query: 450 TATATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEG 509
A+ + + +TV++L + YTF V A N S
Sbjct: 385 EASVRYSEPPHGLTRTSVTVSDLEPHMNYTFTVEARNGVSGLVTSRSF------------ 432
Query: 510 IFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPMTSTSVKLTWEILNT 569
R + ++ ++TS+ ++W I
Sbjct: 433 --------------------------RTASVSINQTEPPKVRLEGRSTTSLSVSWSIPPP 466
Query: 570 D--YIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGK 627
+ + R S + E + LA + Y + G
Sbjct: 467 QQSRVWKYEVTYRKKGDSNSYNVRRT----EGFSVTLDDLAPDTTYLVQVQALTQEGQGA 522
Query: 628 PSNLRAVRTLECEPSG 643
S + +TL P G
Sbjct: 523 GSKVHEFQTL--SPEG 536
Score = 75.2 bits (184), Expect = 5e-14
Identities = 42/321 (13%), Positives = 82/321 (25%), Gaps = 52/321 (16%)
Query: 195 PSDLRLEVGRDAVFLCGIEGS--PPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLL 252
+ G + C ++G P G + + + L
Sbjct: 237 DHAVVPPGGEEPRMHCAVDGEWLVPIGQCLCQAGYEKVEDACQACSPGFFKFEASESPCL 296
Query: 253 KIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEA- 311
+ + + C + P+ P + + LR
Sbjct: 297 ECPEHTLPSPEGATSCECEEGFFRAPQDPASMPCTRPPSAPHYLTAVGMGAKVELRWTPP 356
Query: 312 -----------RLRCQVRGEGSVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYT 360
+ C+ S + E V + S+ ++D+ YT
Sbjct: 357 QDSGGREDIVYSVTCEQCWPESGECGPCEASVRYSEPPHGLTRTSVTVSDLEP--HMNYT 414
Query: 361 CVVKS--PHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGLTLAW 418
V++ S S R S + P K L ++ L+++W
Sbjct: 415 FTVEARNGVSGLVTSRSFRTASVSIN-------------QTEPPKVRLEGRSTTSLSVSW 461
Query: 419 ----SRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTV 474
+ +++ Y+V + V +T+ +L
Sbjct: 462 SIPPPQQSRV-----WKYEVTYR-----------KKGDSNSYNV-RRTEGFSVTLDDLAP 504
Query: 475 GLTYTFLVRALNSHGLSAPSP 495
TY V+AL G A S
Sbjct: 505 DTTYLVQVQALTQEGQGAGSK 525
Score = 51.3 bits (122), Expect = 1e-06
Identities = 14/113 (12%), Positives = 30/113 (26%), Gaps = 13/113 (11%)
Query: 629 SNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQI--------- 679
+ P P + V L+W PP + Y +
Sbjct: 321 APQDPASMPCTRPPSAPHYLT-AVGMGAKVELRWTPPQD-SGGREDIVYSVTCEQCWPES 378
Query: 680 --IVGGGNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRP 730
+ + ++ +++L + Y+ ++ A N SR
Sbjct: 379 GECGPCEASVRYSEPPHGLTRTSVTVSDLEPHMNYTFTVEARNGVSGLVTSRS 431
Score = 32.4 bits (73), Expect = 0.75
Identities = 32/227 (14%), Positives = 55/227 (24%), Gaps = 30/227 (13%)
Query: 2 SLLREEFRVQPKSQRVAAGDTALLECGP------PRGH---PEPTLVWKKNGHPIDFENS 52
SL + G+ + C P G +
Sbjct: 227 SLATVAGTCVDHAVVPPGGEEPRMHCAVDGEWLVPIGQCLCQAGYEKVEDACQACSPGFF 286
Query: 53 KRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVS 112
K + + + +G C + R D +P
Sbjct: 287 KFEASESPCLECPEHTLPSPEGATSCECEEGFF-RAPQDPASMPCTRPPSAPHYLTAVGM 345
Query: 113 ASSIIV-----FECSVGGDAVLTVHWKRLGSAMPEDRMS-----------VLPSRSLQLS 156
+ + + + D V +V ++ E L S+ +S
Sbjct: 346 GAKVELRWTPPQDSGGREDIVYSVTCEQCWPESGECGPCEASVRYSEPPHGLTRTSVTVS 405
Query: 157 DVRLEDAGEYVCE--AENAVGKISASATLTVQMAPIVRERPSDLRLE 201
D LE Y A N V + S + I + P +RLE
Sbjct: 406 D--LEPHMNYTFTVEARNGVSGLVTSRSFRTASVSINQTEPPKVRLE 450
>2djs_A Ephrin type-B receptor 1; tyrosine-protein kinase receptor EPH-2,
NET, HEK6, ELK, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 108
Score = 74.0 bits (182), Expect = 4e-16
Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 3/96 (3%)
Query: 635 RTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTV 694
+ PS VP + V S+ L W P NG+I Y+I ++ +
Sbjct: 2 SSGSSGPSTVPIMH-QVSATMRSITLSWPQPE--QPNGIILDYEIRYYEKEHNEFNSSMA 58
Query: 695 SASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRP 730
+ T T + L G+ Y V + A AG G +S
Sbjct: 59 RSQTNTARIDGLRPGMVYVVQVRARTVAGYGKFSGK 94
Score = 47.4 bits (113), Expect = 8e-07
Identities = 19/102 (18%), Positives = 30/102 (29%), Gaps = 20/102 (19%)
Query: 398 PGPPTKPTLVNQTANGLTLAWS----RNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATA 453
P V+ T +TL+W N I L Y++ Y + +
Sbjct: 8 PSTVPIMHQVSATMRSITLSWPQPEQPNGII-----LDYEIRYYEK---------EHNEF 53
Query: 454 TWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSP 495
+ + + L G+ Y VRA G S
Sbjct: 54 NSSMARSQTNT--ARIDGLRPGMVYVVQVRARTVAGYGKFSG 93
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton,
immunoglobulin domain, muscle protein, phosphorylation,
repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A
1tiu_A 2rq8_A
Length = 93
Score = 73.5 bits (181), Expect = 5e-16
Identities = 17/92 (18%), Positives = 29/92 (31%), Gaps = 9/92 (9%)
Query: 99 KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAM-PEDRMSVL---PSRSLQ 154
+ + V FE + V WK G + ++ L
Sbjct: 5 LIEVEKPLYGVEVFVGETAHFEIELSEPDV-HGQWKLKGQPLAASPDCEIIEDGKKHILI 63
Query: 155 LSDVRLEDAGEYVCEAENAVGKISASATLTVQ 186
L + +L GE +A N ++A L V+
Sbjct: 64 LHNCQLGMTGEVSFQAANT----KSAANLKVK 91
Score = 70.4 bits (173), Expect = 5e-15
Identities = 20/93 (21%), Positives = 29/93 (31%), Gaps = 12/93 (12%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRL-VDGTN--L 63
E V G+TA E P+ WK G P+ S + DG L
Sbjct: 7 EVEKPLYGVEVFVGETAHFEI--ELSEPDVHGQWKLKGQPL--AASPDCEIIEDGKKHIL 62
Query: 64 AIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRV 96
+ + + G N + A L+V
Sbjct: 63 ILHNCQLGMTGEVSFQAANT-----KSAANLKV 90
Score = 70.4 bits (173), Expect = 6e-15
Identities = 11/82 (13%), Positives = 27/82 (32%), Gaps = 4/82 (4%)
Query: 293 PPVILFGPANQTLPLRSEARLRCQV-RGEGSVQWWRGEREVGSGPRVNVTGDG---SLVL 348
+ + + A ++ + QW + + + P + DG L+L
Sbjct: 5 LIEVEKPLYGVEVFVGETAHFEIELSEPDVHGQWKLKGQPLAASPDCEIIEDGKKHILIL 64
Query: 349 TDVTKEDSGEYTCVVKSPHGSA 370
+ +GE + + +A
Sbjct: 65 HNCQLGMTGEVSFQAANTKSAA 86
Score = 40.0 bits (94), Expect = 3e-04
Identities = 22/102 (21%), Positives = 34/102 (33%), Gaps = 17/102 (16%)
Query: 187 MAPI-VRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEIT 245
MA I V + + + VG A F + P W L+G + EI
Sbjct: 3 MALIEVEKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQP--LAASPDC-----EII 54
Query: 246 SDGMN-LLKIQNVSRT-AAPLIILCLGVNAAGSDLARASLTV 285
DG +L + N + A + + A+L V
Sbjct: 55 EDGKKHILILHNCQLGMTG--EVSFQ----AANTKSAANLKV 90
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding
domain of CD48, immune system; HET: NAG; 2.60A {Rattus
norvegicus}
Length = 180
Score = 76.1 bits (187), Expect = 5e-16
Identities = 30/189 (15%), Positives = 51/189 (26%), Gaps = 30/189 (15%)
Query: 12 PKSQRVAAGDTALLECGPPRGHPEPTLVWKK-----------NGHPIDFEN--SKRLRLV 58
+ G L L W NG FE+ R+ L
Sbjct: 6 VPNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLD 65
Query: 59 DGT-NLAIQDSRKTDDGRYQCVVKNVAGTRESTD-AVLRVLVKPYIIRGPKDTTVSASSI 116
L I + K D G Y + + + V ++ KP I + T++
Sbjct: 66 KTNGALRIYNVSKEDRGDYYMRMLHETEDQWKITMEVYEMVSKPMIYWECSNATLT---- 121
Query: 117 IVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGK 176
C V + + + + R +S + C+A N V +
Sbjct: 122 ----CEVLEGTDVELKLYQGKEHLRS-------LRQKTMSYQWTNLRAPFKCKAVNRVSQ 170
Query: 177 ISASATLTV 185
S +
Sbjct: 171 ESEMEVVNC 179
Score = 52.6 bits (126), Expect = 6e-08
Identities = 24/180 (13%), Positives = 57/180 (31%), Gaps = 30/180 (16%)
Query: 202 VGRDAVFLCGIEGSPPPSTF-WMLEGNRSLI-YPGDRVDNIQAEITSDGMNL------LK 253
G + W+ N+ ++ Y + + + D ++L L+
Sbjct: 13 TGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALR 72
Query: 254 IQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARL 313
I NVS+ + + D + ++ V + P+I + +N TL
Sbjct: 73 IYNVSKEDRGDYYMR--MLHETEDQWKITMEVY--EMVSKPMIYWECSNATL-------- 120
Query: 314 RCQVRGEG--SVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSAS 371
C+V ++ ++G+ + S + ++ + C + S
Sbjct: 121 TCEVLEGTDVELKLYQGKEHLRSLRQKT--------MSYQWTNLRAPFKCKAVNRVSQES 172
Score = 43.0 bits (101), Expect = 1e-04
Identities = 12/70 (17%), Positives = 29/70 (41%), Gaps = 7/70 (10%)
Query: 323 VQWWRGEREVGSGPRVN-----VTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLR 377
++++ ++ +G+L + +V+KED G+Y + W ++
Sbjct: 43 LEYFPNGKKTVFESVFKDRVDLDKTNGALRIYNVSKEDRGDYYMRMLHETED-QWKITME 101
Query: 378 -FESPTNPNI 386
+E + P I
Sbjct: 102 VYEMVSKPMI 111
>1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular
matrix, adhesion, fusion protein, structural protein;
2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1
Length = 186
Score = 75.9 bits (187), Expect = 6e-16
Identities = 34/190 (17%), Positives = 66/190 (34%), Gaps = 18/190 (9%)
Query: 551 EVKPMTSTSVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHY 610
EV T T++ L W + + + + +++ F++ GL
Sbjct: 14 EVSDPTETTLSLRWRRPVAK-FDRYRLTYVSPSGKKNEMEIP----VDSTSFILRGLDAG 68
Query: 611 SRYEFFLVPFFGSVDGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTH 670
+ Y LV G KP+ ++ T+ P G+ +D + S + W PP
Sbjct: 69 TEYTISLVAEKGRHKSKPTTIKG-STVVGSPKGI-SFSD---ITENSATVSWTPPR---- 119
Query: 671 NGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRP 730
+ +Y++ +TV S L L G+ Y+V++ + P
Sbjct: 120 -SRVDSYRVSYVPITGGTPNVVTVDGSKTRTKLVKLVPGVDYNVNIISVKGFEESE---P 175
Query: 731 ALLSLTSGPE 740
L + +
Sbjct: 176 ISGILKTALD 185
Score = 58.2 bits (141), Expect = 9e-10
Identities = 31/242 (12%), Positives = 64/242 (26%), Gaps = 63/242 (26%)
Query: 395 STYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATAT 454
T P + + T L+L W R + Y++ S +
Sbjct: 4 GTDLDNPKDLEVSDPTETTLSLRWRR----PVAKFDRYRLTYVS----------PSGKKN 49
Query: 455 WVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEG 514
+ + + S + L G YT + A S P+ + V
Sbjct: 50 EMEIPVDSTS--FILRGLDAGTEYTISLVAEKGRHKSKPTTIKGSTV------------- 94
Query: 515 GKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPMTSTSVKLTWEILNTDYIEG 574
+G I +++ T S ++W + ++
Sbjct: 95 ---------VGSPKG-----------------ISFSDI---TENSATVSWTPPRSR-VDS 124
Query: 575 VYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLRAV 634
+ P V G + + L Y ++ G + +P + +
Sbjct: 125 YRVS---YVPITGGTPNVVTVDGSKTRTKLVKLVPGVDYNVNIISVKGFEESEPISGI-L 180
Query: 635 RT 636
+T
Sbjct: 181 KT 182
Score = 50.1 bits (120), Expect = 5e-07
Identities = 20/102 (19%), Positives = 34/102 (33%), Gaps = 15/102 (14%)
Query: 393 EPSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTAT 452
+ ST G P + + T N T++W+ S + Y+V Y T
Sbjct: 90 KGSTVVGSPKGISFSDITENSATVSWTP----PRSRVDSYRVS-YV--------PITGGT 136
Query: 453 ATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPS 494
V V + + L G+ Y + ++ S P
Sbjct: 137 PNVVTVDGSKTR--TKLVKLVPGVDYNVNIISVKGFEESEPI 176
>1wj3_A KIAA1496 protein; beta sandwich, PANG, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
neuropeptide; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 117
Score = 73.3 bits (180), Expect = 8e-16
Identities = 23/116 (19%), Positives = 37/116 (31%), Gaps = 4/116 (3%)
Query: 626 GKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGN 685
S V T + PS P T VLL W+ + + Y++ +
Sbjct: 3 SGSSGTVNVTTKKTPPSQPPGNVV-WNATDTKVLLNWEQVKAMENESEVTGYKVFYRTSS 61
Query: 686 NSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGPEP 741
+ N+ V + T L Y + + AT G G S + + P
Sbjct: 62 QN---NVQVLNTNKTSAELVLPIKEDYIIEVKATTDGGDGTSSEQIRIPRITSSGP 114
Score = 31.7 bits (72), Expect = 0.37
Identities = 20/105 (19%), Positives = 32/105 (30%), Gaps = 18/105 (17%)
Query: 395 STYPGPPTKP---TLVNQTANGLTLAWSR-NNQIGSSSLLGYQVEMYSRPLPSSSPSGDT 450
+T PP++P + N T + L W + S + GY+V R ++
Sbjct: 12 TTKKTPPSQPPGNVVWNATDTKVLLNWEQVKAMENESEVTGYKVFY--RTSSQNNVQVLN 69
Query: 451 ATATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSP 495
T L + Y V+A G S
Sbjct: 70 TNKTSA------------ELVLPIKEDYIIEVKATTDGGDGTSSE 102
>1wfo_A Sidekick 2; FN3, cell adhesion, structural genomics, riken
structural genomics/proteomics initiative, RSGI; NMR
{Homo sapiens} SCOP: b.1.2.1
Length = 130
Score = 74.0 bits (182), Expect = 9e-16
Identities = 30/120 (25%), Positives = 45/120 (37%), Gaps = 6/120 (5%)
Query: 625 DGKPSNLR-AVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQII--V 681
DG PS+ RTL+ P + + TSV L W+PP NG+I YQI +
Sbjct: 11 DGSPSHPPILERTLDDVPGPPMGIL-FPEVRTTSVRLIWQPPA--APNGIILAYQITHRL 67
Query: 682 GGGNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGPEP 741
+ ++ S T L Y + A R G G + +++ P
Sbjct: 68 NTTTANTATVEVLAPSARQYTATGLKPESVYLFRITAQTRKGWGEAAEALVVTTEKRSGP 127
Score = 46.6 bits (111), Expect = 3e-06
Identities = 22/101 (21%), Positives = 30/101 (29%), Gaps = 16/101 (15%)
Query: 398 PGPPTKPTLVNQTANGLTLAWS---RNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATAT 454
PGPP + L W N I +L YQ+ + TAT
Sbjct: 28 PGPPMGILFPEVRTTSVRLIWQPPAAPNGI----ILAYQITHRLN-------TTTANTAT 76
Query: 455 WVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSP 495
+A + T T L Y F + A G +
Sbjct: 77 VEVLAPSARQ--YTATGLKPESVYLFRITAQTRKGWGEAAE 115
Score = 30.4 bits (69), Expect = 1.0
Identities = 22/95 (23%), Positives = 34/95 (35%), Gaps = 13/95 (13%)
Query: 551 EVKPMTSTSVKLTWE-------ILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFL 603
+ +TSV+L W+ I+ Y I R A+ A + VL +
Sbjct: 35 LFPEVRTTSVRLIWQPPAAPNGII-LAY----QITHRLNTTTANTATVEVLAPSARQ-YT 88
Query: 604 VTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVRTLE 638
TGL S Y F + G+ + V T +
Sbjct: 89 ATGLKPESVYLFRITAQTRKGWGEAAEALVVTTEK 123
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 104
Score = 72.8 bits (179), Expect = 1e-15
Identities = 22/102 (21%), Positives = 39/102 (38%), Gaps = 10/102 (9%)
Query: 292 PPPVILF--GPANQTLPLRSEARLRCQVRG-EGSVQWWRGEREVGSGPRVNVTGDG---S 345
P IL + T L C++ + W++ ++V + V DG
Sbjct: 7 GPVHILSPQDKVSLTFTTSERVVLTCELSRVDFPATWYKDGQKVEESELLVVKMDGRKHR 66
Query: 346 LVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIG 387
L+L + +DSGE+ C S + + P+ P+ G
Sbjct: 67 LILPEAKVQDSGEFECRT----EGVSAFFGVTVQDPSGPSSG 104
Score = 63.6 bits (155), Expect = 2e-12
Identities = 23/94 (24%), Positives = 37/94 (39%), Gaps = 12/94 (12%)
Query: 100 PYIIRGP---KDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPE-DRMSVL---PSRS 152
P I P T + S +V C + W + G + E + + V
Sbjct: 8 PVHILSPQDKVSLTFTTSERVVLTCELSRVDF-PATWYKDGQKVEESELLVVKMDGRKHR 66
Query: 153 LQLSDVRLEDAGEYVCEAENAVGKISASATLTVQ 186
L L + +++D+GE+ C E SA +TVQ
Sbjct: 67 LILPEAKVQDSGEFECRTEGV----SAFFGVTVQ 96
Score = 60.9 bits (148), Expect = 2e-11
Identities = 17/93 (18%), Positives = 32/93 (34%), Gaps = 12/93 (12%)
Query: 11 QPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV-DGTN--LAIQD 67
S + +L C + W K+G + E S+ L + DG L + +
Sbjct: 16 DKVSLTFTTSERVVLTCEL--SRVDFPATWYKDGQKV--EESELLVVKMDGRKHRLILPE 71
Query: 68 SRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKP 100
++ D G ++C + S + V
Sbjct: 72 AKVQDSGEFECRTEG-----VSAFFGVTVQDPS 99
Score = 33.9 bits (78), Expect = 0.046
Identities = 17/107 (15%), Positives = 30/107 (28%), Gaps = 18/107 (16%)
Query: 190 IVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGM 249
+ + L V C + P+T W +G + + + + DG
Sbjct: 12 LSPQDKVSLTFTTSERVVLTCELSRVDFPAT-WYKDGQ--KVEESELL-----VVKMDGR 63
Query: 250 N-LLKIQNVSRT-AAPLIILCLGVNAAGSDLARASLTVSGPDPNPPP 294
L + + C A +TV DP+ P
Sbjct: 64 KHRLILPEAKVQDSG--EFEC----RTEGVSAFFGVTVQ--DPSGPS 102
>2haz_A N-CAM 1, neural cell adhesion molecule 1; fibronectin type III
repeat, FN1, beta sandwich; 1.70A {Homo sapiens} SCOP:
b.1.2.1
Length = 105
Score = 72.4 bits (178), Expect = 2e-15
Identities = 20/101 (19%), Positives = 34/101 (33%), Gaps = 8/101 (7%)
Query: 398 PGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVR 457
P P+ V ++ + + G +L Y+ E + + + W
Sbjct: 7 PSSPSIDQ-VEPYSSTAQVQFDEPEATGGVPILKYKAEW-------RAVGEEVWHSKWYD 58
Query: 458 VATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSD 498
I+T+ L TY + ALN GL S S+
Sbjct: 59 AKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASE 99
Score = 47.4 bits (113), Expect = 1e-06
Identities = 19/85 (22%), Positives = 33/85 (38%), Gaps = 7/85 (8%)
Query: 651 VLLNATSVLLKWKPPPVGTHNGV-IRTYQI---IVGGGN-NSALINMTVSASTPTLLLTN 705
V +++ +++ P GV I Y+ VG +S + ++ + +
Sbjct: 15 VEPYSSTAQVQFDEPE--ATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVG 72
Query: 706 LSAGIRYSVSLAATNRAGTGPYSRP 730
L Y+V LAA N G G S
Sbjct: 73 LKPETTYAVRLAALNGKGLGEISAA 97
>1x5g_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 116
Score = 72.0 bits (177), Expect = 3e-15
Identities = 21/106 (19%), Positives = 36/106 (33%), Gaps = 5/106 (4%)
Query: 625 DGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGG 684
S + P P L + TS+ + W+ P + NG I+ Y++
Sbjct: 2 SSGSSGRVETQPEVQLPGPAPNLR-AYAASPTSITVTWETPV--SGNGEIQNYKLYYMEK 58
Query: 685 NNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRP 730
V S+ + + L YS + A N+ G G +
Sbjct: 59 GTDK--EQDVDVSSHSYTINGLKKYTEYSFRVVAYNKHGPGVSTPD 102
Score = 52.7 bits (127), Expect = 1e-08
Identities = 22/128 (17%), Positives = 36/128 (28%), Gaps = 27/128 (21%)
Query: 368 GSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSS 427
GS+ S + + PGP + +T+ W
Sbjct: 1 GSSGSSGRVETQPEVQL-------------PGPAPNLRAYAASPTSITVTWETPVSGNGE 47
Query: 428 SLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNS 487
+ Y++ + T V + S T+ L Y+F V A N
Sbjct: 48 -IQNYKLYYMEKG-----------TDKEQDVDVSSHS--YTINGLKKYTEYSFRVVAYNK 93
Query: 488 HGLSAPSP 495
HG +P
Sbjct: 94 HGPGVSTP 101
Score = 35.0 bits (81), Expect = 0.021
Identities = 20/90 (22%), Positives = 34/90 (37%), Gaps = 7/90 (7%)
Query: 551 EVKPMTSTSVKLTWE--ILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLA 608
+ TS+ +TWE + I+ +Y + H+ + + GL
Sbjct: 25 RAYAASPTSITVTWETPVSGNGEIQNYKLYYMEKGTDKEQDVDVSSHS-----YTINGLK 79
Query: 609 HYSRYEFFLVPFFGSVDGKPSNLRAVRTLE 638
Y+ Y F +V + G + AVRTL
Sbjct: 80 KYTEYSFRVVAYNKHGPGVSTPDVAVRTLS 109
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor
tyrosine kinase, 3D-domain swapping, transferase; 1.90A
{Homo sapiens} SCOP: b.1.1.4
Length = 118
Score = 71.8 bits (176), Expect = 4e-15
Identities = 26/122 (21%), Positives = 45/122 (36%), Gaps = 20/122 (16%)
Query: 293 PPVILFGPANQTLPLRSEARLRCQVRGEG--SVQWWRGEREVGSGPRVNVTGD------- 343
PP ++ + LR E + VRG ++ W + + ++V
Sbjct: 8 PPRVVSLEEPE---LRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISE 64
Query: 344 GSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTK 403
G L+ T ++G YT + K+P G+A+ + + F P P PP
Sbjct: 65 GCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEP--------FPVDEVSPTPPIT 116
Query: 404 PT 405
T
Sbjct: 117 VT 118
Score = 67.9 bits (166), Expect = 8e-14
Identities = 24/92 (26%), Positives = 35/92 (38%), Gaps = 11/92 (11%)
Query: 25 LECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN-------LAIQDSRKTDDGRYQ 77
+E RG+P PTL W NG P+ SK + + L ++G Y
Sbjct: 25 IEF-VVRGNPPPTLHWLHNGQPL--RESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYT 81
Query: 78 CVVKNVAGTRESTDAVLRVLVKPYIIRGPKDT 109
+ KN GT T L +P+ + T
Sbjct: 82 LIAKNPLGTANQT-INGHFLKEPFPVDEVSPT 112
Score = 66.4 bits (162), Expect = 3e-13
Identities = 18/104 (17%), Positives = 31/104 (29%), Gaps = 11/104 (10%)
Query: 94 LRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED---RMSVLPS 150
L V P ++ + E V G+ T+HW G + E +
Sbjct: 3 LTVYYPPRVVSLEEPELRLEH---CIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQE 59
Query: 151 R-----SLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAP 189
L + + G Y A+N +G + + P
Sbjct: 60 GEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEP 103
Score = 51.4 bits (123), Expect = 5e-08
Identities = 20/124 (16%), Positives = 33/124 (26%), Gaps = 21/124 (16%)
Query: 183 LTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQA 242
LTV P V E+ + + G+PPP+ W+ G + +
Sbjct: 3 LTVYYPPRVVSLEEP---ELRLEHCIEFVVRGNPPPTLHWLHNGQ--PLRESKIIHVEYY 57
Query: 243 EITSDGMNLLKIQNVSR------TAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVI 296
+ L + T + N G+ + P PV
Sbjct: 58 QEGEISEGCLLFNKPTHYNNGNYT-------LIAKNPLGTANQTINGHFLKE---PFPVD 107
Query: 297 LFGP 300
P
Sbjct: 108 EVSP 111
>2ede_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 114
Score = 71.3 bits (175), Expect = 5e-15
Identities = 25/100 (25%), Positives = 38/100 (38%), Gaps = 7/100 (7%)
Query: 636 TLECEPSGVPQ-LT-DPVLLNATSVLLKWKPPPVGTHNGVIRTYQII---VGGGNNSALI 690
+ P+ P+ LT +V++ W+PP NG I Y + I
Sbjct: 3 SGSSGPTSAPKDLTVITREGKPRAVIVSWQPPL--EANGKITAYILFYTLDKNIPIDDWI 60
Query: 691 NMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRP 730
T+S T + +L+ Y + A N G GP S P
Sbjct: 61 METISGDRLTHQIMDLNLDTMYYFRIQARNSKGVGPLSDP 100
Score = 46.2 bits (110), Expect = 3e-06
Identities = 19/111 (17%), Positives = 35/111 (31%), Gaps = 20/111 (18%)
Query: 398 PGPPTKPTL--VNQTANGLTLAW---SRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTAT 452
P T+ + ++W N + Y + + +
Sbjct: 9 TSAPKDLTVITREGKPRAVIVSWQPPLEAN----GKITAYILF--------YTLDKNIPI 56
Query: 453 ATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLR 503
W+ + + +L + Y F ++A NS G PLSD I+ R
Sbjct: 57 DDWIMETISGDRLTHQIMDLNLDTMYYFRIQARNSKG---VGPLSDPILFR 104
Score = 32.4 bits (74), Expect = 0.18
Identities = 18/101 (17%), Positives = 33/101 (32%), Gaps = 14/101 (13%)
Query: 551 EVKPMTSTSVKLTWE--------ILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGF 602
+ +V ++W+ I T YI ++ P M T+ +G+
Sbjct: 18 ITREGKPRAVIVSWQPPLEANGKI--TAYI--LFYTLDKNIPIDDWIMETI--SGDRLTH 71
Query: 603 LVTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVRTLECEPSG 643
+ L + Y F + G S+ RTL+
Sbjct: 72 QIMDLNLDTMYYFRIQARNSKGVGPLSDPILFRTLKVSGPS 112
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C,
C-protein, skeletal muscle fast- isoform, MYBPCF,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 101
Score = 70.4 bits (173), Expect = 7e-15
Identities = 18/95 (18%), Positives = 26/95 (27%), Gaps = 13/95 (13%)
Query: 100 PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVL--------PSR 151
I+ +D V + V + V W + G + +
Sbjct: 9 VLIVTPLEDQQVFVGDRVEMAVEVSEEGA-QVMWMKNGVELTREDSFKARYRFKKDGKRH 67
Query: 152 SLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQ 186
L SDV ED G Y A L V+
Sbjct: 68 ILIFSDVVQEDRGRYQVITNGG----QCEAELIVE 98
Score = 68.9 bits (169), Expect = 2e-14
Identities = 18/86 (20%), Positives = 31/86 (36%), Gaps = 8/86 (9%)
Query: 293 PPVILFGPANQTLPLRSEARLRCQV-RGEGSVQWWRGEREV----GSGPRVNVTGDG--- 344
P +I+ +Q + + + +V V W + E+ R DG
Sbjct: 8 PVLIVTPLEDQQVFVGDRVEMAVEVSEEGAQVMWMKNGVELTREDSFKARYRFKKDGKRH 67
Query: 345 SLVLTDVTKEDSGEYTCVVKSPHGSA 370
L+ +DV +ED G Y + A
Sbjct: 68 ILIFSDVVQEDRGRYQVITNGGQCEA 93
Score = 67.4 bits (165), Expect = 9e-14
Identities = 24/98 (24%), Positives = 35/98 (35%), Gaps = 12/98 (12%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLR---LVDGTN- 62
+ Q+V GD + ++W KNG + E+S + R DG
Sbjct: 10 LIVTPLEDQQVFVGDRVEMAVEV--SEEGAQVMWMKNGVELTREDSFKARYRFKKDGKRH 67
Query: 63 -LAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVK 99
L D + D GRYQ + +A L V K
Sbjct: 68 ILIFSDVVQEDRGRYQVITNG-----GQCEAELIVEEK 100
Score = 33.5 bits (77), Expect = 0.070
Identities = 14/99 (14%), Positives = 25/99 (25%), Gaps = 12/99 (12%)
Query: 189 PIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDG 248
++ D ++ VG + WM G + D + DG
Sbjct: 9 VLIVTPLEDQQVFVGDRVEMAVEV-SEEGAQVMWMKNGV--ELTREDSF-KARYRFKKDG 64
Query: 249 MN-LLKIQNVSRT-AAPLIILCLGVNAAGSDLARASLTV 285
+L +V + + A L V
Sbjct: 65 KRHILIFSDVVQEDRG--RYQVI----TNGGQCEAELIV 97
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK
receptor, receptor tyrosine kinase, 3D-domain swapping,
transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB:
1hcf_X
Length = 103
Score = 70.2 bits (172), Expect = 7e-15
Identities = 20/104 (19%), Positives = 37/104 (35%), Gaps = 15/104 (14%)
Query: 293 PPVILFGPANQTLPLRSEARLRCQVRG--EGSVQWWRGEREVGSGPRVNVTGD------- 343
P I F ++ + V+G + ++QW+ + +
Sbjct: 4 APTITF---LESPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEY 60
Query: 344 -GSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNI 386
G L L + T ++G+YT + K+ +G S F P I
Sbjct: 61 HGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGW--PGI 102
Score = 67.5 bits (165), Expect = 7e-14
Identities = 16/94 (17%), Positives = 33/94 (35%), Gaps = 8/94 (8%)
Query: 15 QRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN------LAIQDS 68
+ + + +G+P+P L W NG ++ ++ + L + +
Sbjct: 11 ESPTSDHHWCIPF-TVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNP 69
Query: 69 RKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYI 102
++G Y + KN G E + P I
Sbjct: 70 THMNNGDYTLIAKNEYGKDEKQ-ISAHFMGWPGI 102
Score = 63.6 bits (155), Expect = 2e-12
Identities = 18/103 (17%), Positives = 31/103 (30%), Gaps = 12/103 (11%)
Query: 96 VLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDR---------MS 146
V P I ++ +V G+ + W G+ + E +
Sbjct: 1 VHFAPTITFLES---PTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNH 57
Query: 147 VLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAP 189
LQL + + G+Y A+N GK + P
Sbjct: 58 TEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGWP 100
Score = 44.3 bits (105), Expect = 9e-06
Identities = 17/111 (15%), Positives = 31/111 (27%), Gaps = 19/111 (17%)
Query: 185 VQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEI 244
V AP + S ++G+P P+ W G ++ +
Sbjct: 1 VHFAPTITFLESP---TSDHHWCIPFTVKGNPKPALQWFYNGA--ILNESKYICTKIHVT 55
Query: 245 TSDGMNL-LKIQNVSR------TAAPLIILCLGVNAAGSDLARASLTVSGP 288
+ L++ N + T + N G D + S G
Sbjct: 56 NHTEYHGCLQLDNPTHMNNGDYT-------LIAKNEYGKDEKQISAHFMGW 99
>2e3v_A Neural cell adhesion molecule 1, 140 kDa isoform; NCAM, N-CAM 1,
NCAM-120, CD56 antigen, membra protein, glycoprotein,
structural genomics, NPPSFA; HET: PGE BTB; 1.95A {Homo
sapiens}
Length = 122
Score = 71.0 bits (174), Expect = 8e-15
Identities = 21/105 (20%), Positives = 36/105 (34%), Gaps = 8/105 (7%)
Query: 394 PSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATA 453
S+ P P+ V ++ + + G +L Y+ E + + +
Sbjct: 4 GSSGPSSPSIDQ-VEPYSSTAQVQFDEPEATGGVPILKYKAEW-------RAVGEEVWHS 55
Query: 454 TWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSD 498
W I+T+ L TY + ALN GL S S+
Sbjct: 56 KWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASE 100
Score = 45.9 bits (109), Expect = 4e-06
Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 9/123 (7%)
Query: 636 TLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQI---IVGGGN-NSALIN 691
+ P + V +++ +++ P T I Y+ VG +S +
Sbjct: 2 SSGSSGPSSPSIDQ-VEPYSSTAQVQFDEPE-ATGGVPILKYKAEWRAVGEEVWHSKWYD 59
Query: 692 MTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGPE---PRLEDWAS 748
++ + + L Y+V LAA N G G S + E P+LE
Sbjct: 60 AKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPVREPSAPKLEGSGP 119
Query: 749 QSG 751
SG
Sbjct: 120 SSG 122
Score = 27.8 bits (62), Expect = 7.4
Identities = 14/102 (13%), Positives = 27/102 (26%), Gaps = 14/102 (13%)
Query: 556 TSTSVKLTWE---------ILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTG 606
S++ ++ ++ I Y + + A + G
Sbjct: 19 YSSTAQVQFDEPEATGGVPI--LKYK---AEWRAVGEEVWHSKWYDAKEASMEGIVTIVG 73
Query: 607 LAHYSRYEFFLVPFFGSVDGKPSNLRAVRTLECEPSGVPQLT 648
L + Y L G G+ S +T P+L
Sbjct: 74 LKPETTYAVRLAALNGKGLGEISAASEFKTQPVREPSAPKLE 115
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW-
type/skeletal muscle SLOW-isoform, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Length = 103
Score = 70.0 bits (172), Expect = 8e-15
Identities = 22/96 (22%), Positives = 33/96 (34%), Gaps = 10/96 (10%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV-DGTN--L 63
Q + G+ LEC + + W KNG I R R+ +G L
Sbjct: 9 MVTKQLEDTTAYCGERVELEC--EVSEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHIL 66
Query: 64 AIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVK 99
I+ + K D Y + + A L V +K
Sbjct: 67 IIEGATKADAAEYSVMTTG-----GQSSAKLSVDLK 97
Score = 69.3 bits (170), Expect = 2e-14
Identities = 21/99 (21%), Positives = 40/99 (40%), Gaps = 10/99 (10%)
Query: 292 PPPVILFGPANQTLPLRSEARLRCQVRG-EGSVQWWRGEREVGSGP--RVNVTGDG---S 345
++ + T L C+V + +V+W++ E+ GP R + +G
Sbjct: 6 SGIMVTKQLEDTTAYCGERVELECEVSEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHI 65
Query: 346 LVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNP 384
L++ TK D+ EY+ + SA L + + P
Sbjct: 66 LIIEGATKADAAEYSVMT----TGGQSSAKLSVDLKSGP 100
Score = 69.3 bits (170), Expect = 2e-14
Identities = 23/104 (22%), Positives = 35/104 (33%), Gaps = 15/104 (14%)
Query: 100 PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLG---SAMPEDRMSVLP---SRSL 153
+ + +DTT + EC V D V W + G P+ R + L
Sbjct: 8 IMVTKQLEDTTAYCGERVELECEVSEDDA-NVKWFKNGEEIIPGPKSRYRIRVEGKKHIL 66
Query: 154 QLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERPSD 197
+ DA EY +SA L+V ++ PS
Sbjct: 67 IIEGATKADAAEYSVMTTGG----QSSAKLSVD----LKSGPSS 102
Score = 34.2 bits (79), Expect = 0.032
Identities = 18/108 (16%), Positives = 32/108 (29%), Gaps = 15/108 (13%)
Query: 188 APIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSD 247
+V ++ D G C + + W G + P R I +
Sbjct: 7 GIMVTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRY-----RIRVE 60
Query: 248 GMN-LLKIQNVSRT-AAPLIILCLGVNAAGSDLARASLTVSGPDPNPP 293
G +L I+ ++ AA + + A L+V P
Sbjct: 61 GKKHILIIEGATKADAA--EYSVM----TTGGQSSAKLSVDLKSG-PS 101
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 103
Score = 70.1 bits (172), Expect = 9e-15
Identities = 19/93 (20%), Positives = 34/93 (36%), Gaps = 8/93 (8%)
Query: 293 PPVILFGPANQTLPLRSEARLRCQVRGEG-SVQWWRGEREVGSGPRVNVTGDG---SLVL 348
N + + A C+ +V W +G E+ + + + +G L +
Sbjct: 8 ANCFTEELTNLQVEEKGTAVFTCKTEHPAATVTWRKGLLELRASGKHQPSQEGLTLRLTI 67
Query: 349 TDVTKEDSGEYTCVVKSPHGSASWSASLRFESP 381
+ + K DS YTC + G A A L +
Sbjct: 68 SALEKADSDTYTCDI----GQAQSRAQLLVQGR 96
Score = 67.7 bits (166), Expect = 7e-14
Identities = 18/95 (18%), Positives = 30/95 (31%), Gaps = 9/95 (9%)
Query: 100 PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAM-PEDRMSVLP---SRSLQL 155
+ V VF C A TV W++ + + + L +
Sbjct: 9 NCFTEELTNLQVEEKGTAVFTCKTEHPAA-TVTWRKGLLELRASGKHQPSQEGLTLRLTI 67
Query: 156 SDVRLEDAGEYVCEAENAVGKISASATLTVQMAPI 190
S + D+ Y C+ G+ + A L VQ
Sbjct: 68 SALEKADSDTYTCDI----GQAQSRAQLLVQGRRS 98
Score = 67.4 bits (165), Expect = 8e-14
Identities = 21/97 (21%), Positives = 34/97 (35%), Gaps = 12/97 (12%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV-DGTN--L 63
F + + +V TA+ C HP T+ W+K + S + + +G L
Sbjct: 10 CFTEELTNLQVEEKGTAVFTC--KTEHPAATVTWRKGLLEL--RASGKHQPSQEGLTLRL 65
Query: 64 AIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKP 100
I K D Y C + + A L V +
Sbjct: 66 TISALEKADSDTYTCDIGQA-----QSRAQLLVQGRR 97
Score = 45.8 bits (109), Expect = 3e-06
Identities = 22/107 (20%), Positives = 37/107 (34%), Gaps = 16/107 (14%)
Query: 188 APIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSD 247
A E ++L++E AVF C P + W + + + + +
Sbjct: 8 ANCFTEELTNLQVEEKGTAVFTCKT-EHPAATVTWRKGLL--ELRASGKH-----QPSQE 59
Query: 248 GMNL-LKIQNVSRT-AAPLIILCLGVNAAGSDLARASLTVSGPDPNP 292
G+ L L I + + + C G +RA L V G P
Sbjct: 60 GLTLRLTISALEKADSD--TYTC----DIGQAQSRAQLLVQGRRSGP 100
>1uey_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, NG-CAM
related cell adhesion molecule, fibronectin type III
domain, structural genomics; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 127
Score = 70.5 bits (173), Expect = 1e-14
Identities = 23/104 (22%), Positives = 40/104 (38%), Gaps = 10/104 (9%)
Query: 398 PGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVR 457
P PP L +Q + L+W+ + +S + + +E W
Sbjct: 17 PNPPFDLELTDQLDKSVQLSWTPGDD-NNSPITKFIIEYED---------AMHKPGLWHH 66
Query: 458 VATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIV 501
+ NL+ + Y+F V A+NS G S PS S++ +
Sbjct: 67 QTEVSGTQTTAQLNLSPYVNYSFRVMAVNSIGKSLPSEASEQYL 110
Score = 40.0 bits (94), Expect = 4e-04
Identities = 28/104 (26%), Positives = 36/104 (34%), Gaps = 7/104 (6%)
Query: 640 EPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQI--IVGGGNNSALINMTVSAS 697
P +LTD SV L W P +N I + I + T +
Sbjct: 18 NPPFDLELTD---QLDKSVQLSWTPGD--DNNSPITKFIIEYEDAMHKPGLWHHQTEVSG 72
Query: 698 TPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGPEP 741
T T NLS + YS + A N G S + LT EP
Sbjct: 73 TQTTAQLNLSPYVNYSFRVMAVNSIGKSLPSEASEQYLTKASEP 116
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily.,
cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Length = 231
Score = 73.3 bits (179), Expect = 1e-14
Identities = 36/225 (16%), Positives = 63/225 (28%), Gaps = 49/225 (21%)
Query: 11 QPKSQRVAAGDTALLECGPPRGHPEPTLVWKK---------------------NGHPIDF 49
P V G + +L+C P H L W
Sbjct: 6 VPPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTR 65
Query: 50 ENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIR----G 105
S +L L + +++ D+ Y CVV+ A A L V KP
Sbjct: 66 GRSPPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNK 125
Query: 106 PKDTTVSASSIIVFECSV-GGDAVLTVHWKRLGSAMPEDRMSVLP--------------- 149
+ + S+ + C+ G+ + W R G +
Sbjct: 126 GTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLL 185
Query: 150 --SRSLQLSDVRLEDAGEYVCEAENAV------GKISASATLTVQ 186
+ +L L + + + C A ++ S + LT+
Sbjct: 186 SLTSTLYLRLRKDDRDASFHCAAHYSLPEGRHGRLDSPTFHLTLH 230
Score = 52.1 bits (124), Expect = 2e-07
Identities = 33/178 (18%), Positives = 55/178 (30%), Gaps = 34/178 (19%)
Query: 300 PANQTLPLRSEARLRCQVRGEGS---VQWWRGERE-----------------------VG 333
P + L C G ++W+ +R G
Sbjct: 7 PPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRG 66
Query: 334 SGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKS-PHGSASWSASLR-FESPTNPNIGFFRA 391
P + G LVL + D +Y CVV++ G+A +A L F P + +
Sbjct: 67 RSPPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKG 126
Query: 392 PEPSTYPGPPTKPTLVNQTANG---LTLAWSRNNQ-IGSSSLLGYQVEMYSRPLPSSS 445
+ + NG + W RN Q + + + M SR + +S
Sbjct: 127 TLSVMEDSA--QEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREAS 182
Score = 50.2 bits (119), Expect = 8e-07
Identities = 33/223 (14%), Positives = 59/223 (26%), Gaps = 40/223 (17%)
Query: 195 PSDLRLEVGRDAVFLCGIEGSPPPSTF-WML---EGNRSLIYPGDRVDNIQAEITSDGMN 250
P + + G+ + C G+ W L G R + + + D
Sbjct: 7 PPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRG 66
Query: 251 LLKIQNVSRTAAPLII-----------LC-LGVNAAGSDLARASLTVSGPDPNPPPVILF 298
+ L++ +C + AAG+ A A L V P V
Sbjct: 67 RSPPYQLDSQGR-LVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAK-PEATEVSPN 124
Query: 299 GPANQTLPLRSEARLRCQVRG---EGSVQWWRGEREVGSGPRVNVTGDG----------- 344
+ ++ C R + W+R + + +N G
Sbjct: 125 KGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGL 184
Query: 345 -----SLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPT 382
+L L + + C R +SPT
Sbjct: 185 LSLTSTLYLRLRKDDRDASFHCAAHYSLPE---GRHGRLDSPT 224
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 76.3 bits (188), Expect = 1e-14
Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 6/96 (6%)
Query: 99 KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHW-----KRLGSAMPEDRMSVLPSRSL 153
P I+ P D V+ +C +V W + + R++VL +L
Sbjct: 341 APVIVEPPADLNVTEGMAAELKCRASTSLT-SVSWITPNGTVMTHGAYKVRIAVLSDGTL 399
Query: 154 QLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAP 189
++V ++D G Y C N+VG +ASATL V
Sbjct: 400 NFTNVTVQDTGMYTCMVSNSVGNTTASATLNVTGTH 435
Score = 72.9 bits (179), Expect = 1e-13
Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 6/100 (6%)
Query: 292 PPPVILFGPANQTLPLRSEARLRCQVRG-EGSVQWWRGEREV----GSGPRVNVTGDGSL 346
PVI+ PA+ + A L+C+ SV W V R+ V DG+L
Sbjct: 340 YAPVIVEPPADLNVTEGMAAELKCRASTSLTSVSWITPNGTVMTHGAYKVRIAVLSDGTL 399
Query: 347 VLTDVTKEDSGEYTCVVKSPHGSASWSASLR-FESPTNPN 385
T+VT +D+G YTC+V + G+ + SA+L + + +
Sbjct: 400 NFTNVTVQDTGMYTCMVSNSVGNTTASATLNVTGTHHHHH 439
Score = 59.8 bits (145), Expect = 2e-09
Identities = 23/95 (24%), Positives = 34/95 (35%), Gaps = 7/95 (7%)
Query: 9 RVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLR---LVDGTNLAI 65
P V G A L+C ++ W + + ++R L DGT L
Sbjct: 345 VEPPADLNVTEGMAAELKC--RASTSLTSVSWITPNGTVMTHGAYKVRIAVLSDGT-LNF 401
Query: 66 QDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKP 100
+ D G Y C+V N G ++ A L V
Sbjct: 402 TNVTVQDTGMYTCMVSNSVGNTTAS-ATLNVTGTH 435
Score = 52.1 bits (125), Expect = 6e-07
Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 7/105 (6%)
Query: 189 PIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDG 248
P++ E P+DL + G A C + S W+ + + +V + + SDG
Sbjct: 342 PVIVEPPADLNVTEGMAAELKC-RASTSLTSVSWITPNGTVMTHGAYKV---RIAVLSDG 397
Query: 249 MNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPP 293
L NV+ + C+ N+ G+ A A+L V+G +
Sbjct: 398 T--LNFTNVTVQDTGMYT-CMVSNSVGNTTASATLNVTGTHHHHH 439
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 113
Score = 69.8 bits (171), Expect = 2e-14
Identities = 28/104 (26%), Positives = 39/104 (37%), Gaps = 8/104 (7%)
Query: 282 SLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQV-RGEGSVQWWRGEREVGSGPRVNV 340
S SG D + V G L C++ R V+W + EV P + +
Sbjct: 2 SSGSSGTDVSSWIVYPSGKVYVAAVRLERVVLTCELCRPWAEVRWTKDGEEVVESPALLL 61
Query: 341 TGDG---SLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESP 381
+ LVL V EDSGEY C + S S ++ P
Sbjct: 62 QKEDTVRRLVLPAVQLEDSGEYLCEI----DDESASFTVTVTEP 101
Score = 66.3 bits (162), Expect = 2e-13
Identities = 30/115 (26%), Positives = 44/115 (38%), Gaps = 14/115 (12%)
Query: 91 DAVLRVLVKPYIIRGPK---DTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPE-DRMS 146
+ I P +V C + V W + G + E +
Sbjct: 2 SSGSSGTDVSSWIVYPSGKVYVAAVRLERVVLTCELCRPWA-EVRWTKDGEEVVESPALL 60
Query: 147 VLPS---RSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAP--IVRERPS 196
+ R L L V+LED+GEY+CE ++ SAS T+TV P I+ PS
Sbjct: 61 LQKEDTVRRLVLPAVQLEDSGEYLCEIDDE----SASFTVTVTEPPVRIIYSGPS 111
Score = 61.3 bits (149), Expect = 1e-11
Identities = 22/102 (21%), Positives = 35/102 (34%), Gaps = 15/102 (14%)
Query: 8 FRVQPKSQR---VAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV-DGTN- 62
+ V P + + +L C P + W K+G + S L L + T
Sbjct: 13 WIVYPSGKVYVAAVRLERVVLTCEL--CRPWAEVRWTKDGEEV--VESPALLLQKEDTVR 68
Query: 63 -LAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYII 103
L + + D G Y C + + ES + V P I
Sbjct: 69 RLVLPAVQLEDSGEYLCEIDD-----ESASFTVTVTEPPVRI 105
Score = 41.7 bits (98), Expect = 1e-04
Identities = 20/127 (15%), Positives = 36/127 (28%), Gaps = 22/127 (17%)
Query: 180 SATLTVQMAPIVRERPSDLR---LEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDR 236
S+ + PS V C + P W +G +
Sbjct: 2 SSGSSGTDVSSWIVYPSGKVYVAAVRLERVVLTCEL-CRPWAEVRWTKDGE--EVVESPA 58
Query: 237 VDNIQAEITSDGMN-LLKIQNVSRT-AAPLIILCLGVNAAGSDLARASLTVSGPDPNPPP 294
+ + + L + V + LC + A ++TV+ P P
Sbjct: 59 L-----LLQKEDTVRRLVLPAVQLEDSG--EYLC----EIDDESASFTVTVTEP---PVR 104
Query: 295 VILFGPA 301
+I GP+
Sbjct: 105 IIYSGPS 111
>1x5z_A Receptor-type tyrosine-protein phosphatase delta; fibronectin type
III domain containing protein, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 115
Score = 69.7 bits (171), Expect = 2e-14
Identities = 24/106 (22%), Positives = 36/106 (33%), Gaps = 6/106 (5%)
Query: 625 DGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGG 684
S V T P + TS+LL W PP + I Y+++ G
Sbjct: 2 SSGSSGDIQVITQTGVPGQPLNFK-AEPESETSILLSWTPPR----SDTIANYELVYKDG 56
Query: 685 NNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRP 730
+ +T+ T + L L Y LAA + G G +
Sbjct: 57 EHGEEQRITIEPGT-SYRLQGLKPNSLYYFRLAARSPQGLGASTAE 101
Score = 52.0 bits (125), Expect = 3e-08
Identities = 17/100 (17%), Positives = 31/100 (31%), Gaps = 19/100 (19%)
Query: 398 PGPPTKPTLVNQTANGLTLAWS--RNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATW 455
PG P ++ + L+W+ R++ I Y++
Sbjct: 18 PGQPLNFKAEPESETSILLSWTPPRSDTI-----ANYELVYKD------------GEHGE 60
Query: 456 VRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSP 495
+ T P + L Y F + A + GL A +
Sbjct: 61 EQRITIEPGTSYRLQGLKPNSLYYFRLAARSPQGLGASTA 100
Score = 34.6 bits (80), Expect = 0.030
Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 4/91 (4%)
Query: 551 EVKPMTSTSVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHY 610
+ +P + TS+ L+W +D I + + + + + + + GL
Sbjct: 25 KAEPESETSILLSWTPPRSDTIANYELVYKDGEHGEEQRITI----EPGTSYRLQGLKPN 80
Query: 611 SRYEFFLVPFFGSVDGKPSNLRAVRTLECEP 641
S Y F L G + + RT++
Sbjct: 81 SLYYFRLAARSPQGLGASTAEISARTMQSSG 111
>2ic2_A CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin type III, protein
binding; HET: MSE; 1.30A {Drosophila melanogaster} SCOP:
b.1.2.1
Length = 115
Score = 68.8 bits (168), Expect = 3e-14
Identities = 19/108 (17%), Positives = 40/108 (37%), Gaps = 3/108 (2%)
Query: 398 PGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSS--SPSGDTATATW 455
PPT P + + + L W ++ ++V+ + + + +
Sbjct: 3 TYPPTPPNVTRLSDESVMLRWMVPRN-DGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKP 61
Query: 456 VRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLR 503
+ S +VT+L TY F + A+ S+ + S S + L+
Sbjct: 62 KWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQ 109
Score = 44.9 bits (106), Expect = 9e-06
Identities = 21/104 (20%), Positives = 33/104 (31%), Gaps = 18/104 (17%)
Query: 640 EPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQI---IVGGGNNSALINMTVSA 696
P P +T L+ SV+L+W P I +++ +VG N N +
Sbjct: 4 YPPTPPNVTR---LSDESVMLRWMVPR--NDGLPIVIFKVQYRMVGKRKNWQTTNDNIPY 58
Query: 697 STP----------TLLLTNLSAGIRYSVSLAATNRAGTGPYSRP 730
P T +T+L Y + A S
Sbjct: 59 GKPKWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNT 102
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 75.3 bits (185), Expect = 5e-14
Identities = 26/107 (24%), Positives = 39/107 (36%), Gaps = 12/107 (11%)
Query: 398 PGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVR 457
P PP P + N + L+W G S + Y +E R +W
Sbjct: 10 PEPPRFPIIENILDEAVILSWKPPALDGGSLVTNYTIEK--REAMGG---------SWSP 58
Query: 458 VATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRG 504
A + T+ L G Y F + A N HG S P + +++ G
Sbjct: 59 CAKSR-YTYTTIEGLRAGKQYEFRIIAENKHGQSKPCEPTAPVLIPG 104
Score = 66.8 bits (163), Expect = 2e-11
Identities = 23/134 (17%), Positives = 38/134 (28%), Gaps = 6/134 (4%)
Query: 249 MNLLKIQNVSRTAAPLIIL-CLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPL 307
K PL + + P + P +
Sbjct: 437 SIKTKYDAWPEPLPPLGRISNYSSLRKHRPQEYSIRDAFWDRSEAQPRFIVKPYGTEVGE 496
Query: 308 RSEARLRCQVRG--EGSVQWWRGEREVGSGPRVNVTGDG---SLVLTDVTKEDSGEYTCV 362
A C+V V W + +RE+ + +G L + V +D GEYT
Sbjct: 497 GQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVR 556
Query: 363 VKSPHGSASWSASL 376
K+ +G+ L
Sbjct: 557 AKNSYGTKEEIVFL 570
Score = 63.7 bits (155), Expect = 2e-10
Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 5/94 (5%)
Query: 5 REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN-- 62
+ F V+P V G +A C P + W K+ + ++ K ++ +G +
Sbjct: 482 QPRFIVKPYGTEVGEGQSANFYCRV-IASSPPVVTWHKDDRELK-QSVKYMKRYNGNDYG 539
Query: 63 LAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRV 96
L I + D G Y KN GT+E L V
Sbjct: 540 LTINRVKGDDKGEYTVRAKNSYGTKEEI-VFLNV 572
Score = 62.2 bits (151), Expect = 5e-10
Identities = 21/91 (23%), Positives = 33/91 (36%), Gaps = 4/91 (4%)
Query: 99 KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSR----SLQ 154
+P I P T V F C V + V W + + + + L
Sbjct: 482 QPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLT 541
Query: 155 LSDVRLEDAGEYVCEAENAVGKISASATLTV 185
++ V+ +D GEY A+N+ G L V
Sbjct: 542 INRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 572
Score = 47.1 bits (112), Expect = 2e-05
Identities = 18/102 (17%), Positives = 31/102 (30%), Gaps = 9/102 (8%)
Query: 186 QMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEIT 245
+ P +P + G+ A F C + S PP W + + +
Sbjct: 480 EAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRE--LKQSVKY-----MKR 532
Query: 246 SDGMNL-LKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVS 286
+G + L I V N+ G+ L V+
Sbjct: 533 YNGNDYGLTINRVKGDDKGEYT-VRAKNSYGTKEEIVFLNVT 573
Score = 37.1 bits (86), Expect = 0.029
Identities = 25/105 (23%), Positives = 39/105 (37%), Gaps = 9/105 (8%)
Query: 640 EPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNG--VIRTYQIIVGGGNNSALINMTVSAS 697
EP P + + + +V+L WKPP +G ++ Y I + S
Sbjct: 11 EPPRFPIIEN---ILDEAVILSWKPPA---LDGGSLVTNYTIEKREAMGGSWSPCAKSRY 64
Query: 698 TPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGPEPR 742
T + L AG +Y + A N+ G P L G E +
Sbjct: 65 T-YTTIEGLRAGKQYEFRIIAENKHGQSKPCEPTAPVLIPGDERK 108
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 75.9 bits (186), Expect = 5e-14
Identities = 131/762 (17%), Positives = 208/762 (27%), Gaps = 304/762 (39%)
Query: 2 SLLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGT 61
S L+E+F +L PEPT G D E + LV
Sbjct: 31 SQLQEQF-------------NKIL--------PEPT-----EGFAADDEPTTPAELV--- 61
Query: 62 NLAIQDSRKTDDGRYQCVVKNVA--GTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVF 119
G++ V ++ D VL + + F
Sbjct: 62 ------------GKFLGYVSSLVEPSKVGQFDQVLNLCLTE------------------F 91
Query: 120 ECSV--GGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKI 177
E G D +H L + + ++ + L + + Y+ A +
Sbjct: 92 ENCYLEGND----IH--ALAAKLLQENDTTLVKTKELIKN--------YI-TARIMAKR- 135
Query: 178 SASATLTVQMAPIVRERPSDLRLEVGRD------AVFLCGIEGSPPPSTFWM-LEGNRSL 230
P ++ S L + A+F G +G+ ++ L R L
Sbjct: 136 -----------PFDKKSNSAL-FRAVGEGNAQLVAIF--GGQGNT--DDYFEEL---RDL 176
Query: 231 --IYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGP 288
Y + I L ++ + A + G ++ + P
Sbjct: 177 YQTYHV----LVGDLIKFSAETLSELIRTTLDAEKVF-------TQGLNILEW---LENP 222
Query: 289 DPNPP-PVILFGPANQTLPLRSEARL-----RCQVRGEGSVQWWRGE-REVGSGPRVNVT 341
P +L P + PL +L ++ G + GE R G T
Sbjct: 223 SNTPDKDYLLSIPI--SCPLIGVIQLAHYVVTAKLLG-----FTPGELRSYLKG----AT 271
Query: 342 GDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPP 401
G ++T V + + SW ES FF +
Sbjct: 272 GHSQGLVTAV----------AIAE---TDSW------ES-------FFVS---------- 295
Query: 402 TKPTLVNQTANGLT-LAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVAT 460
+T L + IG Y P S PS +
Sbjct: 296 --------VRKAITVLFF-----IGVRCYEAY-------PNTSLPPS---ILEDSLENNE 332
Query: 461 NVPSPILTVTNLTVGLTYTFL---VRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKG 517
VPSP+L+++ LT + V NSH L A + I L
Sbjct: 333 GVPSPMLSIS----NLTQEQVQDYVNKTNSH-LPAGKQVE--ISLV-------------- 371
Query: 518 IFSENFPDE----GRGESLRRARQHLQEGGG------SLIELTEVKPMTSTSVKLTWEIL 567
N G +SL L++ S I +E K K + L
Sbjct: 372 ----NGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKL------KFSNRFL 421
Query: 568 ------NTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFF 621
++ + PAS + L S F + +P +
Sbjct: 422 PVASPFHSHLLV-----------PASDLINKDLVKNNVS-FNAKDIQ---------IPVY 460
Query: 622 GSVDGKPSNLRAVRTLECEPSGVPQLT-DPVLLNATSVLLKWK--PPPVGTHNGVIRTYQ 678
+ DG S+LR + V + PV KW+ TH
Sbjct: 461 DTFDG--SDLRVLSG-SISERIVDCIIRLPV---------KWETTTQFKATH-------- 500
Query: 679 IIV-GGGNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAAT 719
I+ G G S L +T T G+R V +A T
Sbjct: 501 ILDFGPGGASGLGVLTHRNKDGT--------GVR--VIVAGT 532
Score = 56.2 bits (135), Expect = 5e-08
Identities = 103/632 (16%), Positives = 163/632 (25%), Gaps = 241/632 (38%)
Query: 472 LTVG-LTYTFLV-RALNSHG----------LSAPS--------PLSD-EIVLR--GTFSE 508
L+ G L + LV A L P+ P + E+V + G +
Sbjct: 11 LSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLG-YVS 69
Query: 509 GIFSEGGKGIFSENFPDEGRGESLRRARQHLQEG--GG----SLI-ELTEVKPMTSTSVK 561
+ G F + L + G +L +L + T K
Sbjct: 70 SLVEPSKVGQFDQ---------VLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTK 120
Query: 562 LTWEILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTG-----------LAH- 609
E++ YI + R D ++ A+ + G A + G L
Sbjct: 121 ---ELIKN-YITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDL 176
Query: 610 YSRYEFFLVPFFGSVDGKPSNLRAVRTLECEPSGVPQ-------LTDP-------VLLNA 655
Y Y + S L +RT Q L +P LL+
Sbjct: 177 YQTYHVLVGDLIKFSAETLSEL--IRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSI 234
Query: 656 T-SVLLKWKPPPVG----THNGVIRTYQII--VGGGNNSALINMTVSASTPTLLLTNLSA 708
S P +G H Y + + G L + A+ S
Sbjct: 235 PISC------PLIGVIQLAH------YVVTAKLLGFTPGELRSYLKGATG-------HSQ 275
Query: 709 GIRYSVSLAATNRAGTGP-YSRPALLSLT----SG-------PEPRLEDWASQSGRSRGD 756
G+ V+ A + + ++T G P L + +
Sbjct: 276 GL---VTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNE 332
Query: 757 GTMETDLTDLTGGAWLSAPWFIALLTSMVAVMALLFLAMF-FVRRRTLHAKKS-----SL 810
G + M+++ L + +V + H SL
Sbjct: 333 GVP----------------------SPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISL 370
Query: 811 DHNS------AGPGLLATPISL----------KAASGL-----PH----PGGG------- 838
N +GP P SL KA SGL P
Sbjct: 371 -VNGAKNLVVSGP-----PQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVA 424
Query: 839 -------LTTANEGLWIDGKAGAGLSHPGGGLTTANQWMDGGSTRATGWRTGEGQVLLPH 891
L A++ + D L N + + + T +G
Sbjct: 425 SPFHSHLLVPASDLINKD-------------LVKNNVSFNAKDIQIPVYDTFDGS----- 466
Query: 892 AQPDYAEVAASGALSTFIPEGL----------WIDGKAGAGLSH-----PG-----GGLT 931
D ++ S I E + W + +H PG G LT
Sbjct: 467 ---DLRVLSGS------ISERIVDCIIRLPVKW-ETTTQFKATHILDFGPGGASGLGVLT 516
Query: 932 TANQWMDGGSTRATGWRTGEGQVLLPHAQPDY 963
N+ DG TG R L + DY
Sbjct: 517 HRNK--DG-----TGVRVIVAGTLDINPDDDY 541
Score = 37.7 bits (87), Expect = 0.022
Identities = 43/215 (20%), Positives = 66/215 (30%), Gaps = 84/215 (39%)
Query: 12 PKSQRVAA----GDTALLECGPP----------RGHPEPTLVWKKNGHPIDFENSKR--- 54
P ++V G L+ GPP R P+ + I F S+R
Sbjct: 361 PAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPS---GLDQSRIPF--SERKLK 415
Query: 55 -----LR---------LVDGTNLAIQDSRK----------------TDDGRYQCVVKNVA 84
L LV ++L +D K T DG ++
Sbjct: 416 FSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDG------SDL- 468
Query: 85 GTRESTDAVLRVLVKPYIIRGPKD----TTVSASSIIVFECSVGGDAVLTVHWKRLGSAM 140
R + ++ +V IIR P T A+ I+ F GG + LG
Sbjct: 469 --RVLSGSISERIV-DCIIRLPVKWETTTQFKATHILDF--GPGGAS-------GLGV-- 514
Query: 141 PEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVG 175
L R+ + VR+ AG ++ G
Sbjct: 515 -------LTHRNKDGTGVRVIVAGTLDINPDDDYG 542
Score = 35.4 bits (81), Expect = 0.13
Identities = 59/335 (17%), Positives = 103/335 (30%), Gaps = 112/335 (33%)
Query: 63 LAIQDSRKTDDGRYQCVVKNVA-----GTRESTDAVLRVLVKPYIIRGPKDTTVSASSII 117
+AI ++ + + + V K + G R +A + P I+ + S +
Sbjct: 281 VAIAET-DSWESFFVSVRKAITVLFFIGVR-CYEAYPNTSLPPSILEDSLENNEGVPSPM 338
Query: 118 VFECSVGG--DAVLTVHWKRLGSAMPED-----------RMSVL--PSRSLQLSDVRLED 162
+ S+ + + + S +P + V+ P +SL ++ L
Sbjct: 339 L---SISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLR- 394
Query: 163 AGEYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPP---P- 218
K A + L P ER FL P P
Sbjct: 395 -------------KAKAPSGLDQSRIPF-SERKLKFSNR------FL-------PVASPF 427
Query: 219 -STFWMLEGNRSLIYPGDRVDNIQAE-----I----TSDGMNLLKIQNVSRTAAPLI--- 265
S L LI +N+ I T DG +L + +S + + I
Sbjct: 428 HSHL--LVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDL---RVLSGSISERIVDC 482
Query: 266 ILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRGEGSVQW 325
I+ L V + +A+ ++ FGP G G +
Sbjct: 483 IIRLPVKWETTTQFKATH-----------ILDFGPGG--------------ASGLGVLT- 516
Query: 326 WRGEREV-GSGPRVNVTGDGSLVLTDVTKEDSGEY 359
R G+G RV + G+L D+ +D +Y
Sbjct: 517 ---HRNKDGTGVRV-IVA-GTL---DINPDD--DY 541
>1he7_A High affinity nerve growth factor receptor; transferase,
TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP:
b.1.1.4 PDB: 1wwa_X 1www_X
Length = 126
Score = 68.8 bits (168), Expect = 5e-14
Identities = 18/115 (15%), Positives = 37/115 (32%), Gaps = 11/115 (9%)
Query: 12 PKSQRVAAGDTALLECGPP--RGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN------- 62
P S ++ C P G P P+L W NG ++ + ++
Sbjct: 4 PASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHG 63
Query: 63 -LAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSI 116
L + ++G Y + N G ++ + + P+ + S+
Sbjct: 64 CLRLNQPTHVNNGNYTLLAANPFGQASAS-IMAAFMDNPFEFNPEDPIPDTNSTS 117
Score = 57.6 bits (139), Expect = 3e-10
Identities = 23/125 (18%), Positives = 35/125 (28%), Gaps = 18/125 (14%)
Query: 293 PPVILFGPANQTLPLRSEARLRCQVRGEG--SVQWWRGEREVGSGPRVNV---------- 340
P + + + V G+ S++W + +
Sbjct: 3 MPASVQLHTAVEMHHWC---IPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANET 59
Query: 341 TGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGP 400
G L L T ++G YT + +P G AS S F P P P T
Sbjct: 60 VRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDN--PFEFNPEDPIPDTNS-T 116
Query: 401 PTKPT 405
P
Sbjct: 117 SGDPV 121
Score = 56.1 bits (135), Expect = 1e-09
Identities = 20/101 (19%), Positives = 31/101 (30%), Gaps = 14/101 (13%)
Query: 100 PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRM-----------SVL 148
P ++ + I SV G ++ W GS + E +
Sbjct: 4 PASVQLHTAVEMHHWCI---PFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETV 60
Query: 149 PSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAP 189
L+L+ + G Y A N G+ SAS P
Sbjct: 61 RHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNP 101
Score = 36.5 bits (84), Expect = 0.009
Identities = 17/112 (15%), Positives = 33/112 (29%), Gaps = 21/112 (18%)
Query: 195 PSDLRLEVGRDAVFLC---GIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNL 251
P+ ++L + C ++G P PS W+ G+ ++ + E ++
Sbjct: 4 PASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGS--VLNETSFIFTEFLEPAANETVR 61
Query: 252 ---LKIQNVSR------TAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPP 294
L++ + T L N G A P
Sbjct: 62 HGCLRLNQPTHVNNGNYT-------LLAANPFGQASASIMAAFMDNPFEFNP 106
>1x3d_A Fibronectin type-III domain containing protein 3A; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 118
Score = 68.2 bits (167), Expect = 6e-14
Identities = 21/105 (20%), Positives = 34/105 (32%), Gaps = 12/105 (11%)
Query: 394 PSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATA 453
S P P P + N+T N LTL W + S + + +E
Sbjct: 14 LSCEPDIPNPPRIANRTKNSLTLQWKAPSD-NGSKIQNFVLEWDE----------GKGNG 62
Query: 454 TWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSD 498
+ + +T L+ + F + A N +G S S
Sbjct: 63 EFCQC-YMGSQKQFKITKLSPAMGCKFRLSARNDYGTSGFSEEVL 106
Score = 49.7 bits (119), Expect = 2e-07
Identities = 26/119 (21%), Positives = 40/119 (33%), Gaps = 7/119 (5%)
Query: 625 DGKPSNLRAVRTLECEPS--GVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVG 682
S TL CEP P++ + S+ L+WK P I+ + +
Sbjct: 2 SSGSSGAEIFTTLSCEPDIPNPPRIAN---RTKNSLTLQWKAPSDN--GSKIQNFVLEWD 56
Query: 683 GGNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGPEP 741
G + S +T LS + L+A N GT +S L + P
Sbjct: 57 EGKGNGEFCQCYMGSQKQFKITKLSPAMGCKFRLSARNDYGTSGFSEEVLYYTSGCSGP 115
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2;
IG domain, structural protein; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 104
Score = 67.8 bits (166), Expect = 6e-14
Identities = 23/87 (26%), Positives = 29/87 (33%), Gaps = 9/87 (10%)
Query: 12 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN--LAIQDSR 69
+ +V+ G L + + W KNG I SK + G L I
Sbjct: 23 EPAYQVSKGHKIRLTV--ELADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCS 80
Query: 70 KTDDGRYQCVVKNVAGTRESTDAVLRV 96
DD YQCVV E L V
Sbjct: 81 LADDAAYQCVVGG-----EKCSTELFV 102
Score = 65.9 bits (161), Expect = 2e-13
Identities = 17/103 (16%), Positives = 28/103 (27%), Gaps = 11/103 (10%)
Query: 90 TDAVLRVLVKPYIIRGPKDT-TVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDR---- 144
+ + + + VS I + V W + G +
Sbjct: 6 HHSSMDEKKSTAFQKKLEPAYQVSKGHKIRLTVELADHDA-EVKWLKNGQEIQMSGSKYI 64
Query: 145 -MSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQ 186
S+ R+L +S L D Y C S L V+
Sbjct: 65 FESIGAKRTLTISQCSLADDAAYQCVVGGE----KCSTELFVK 103
Score = 65.9 bits (161), Expect = 2e-13
Identities = 16/96 (16%), Positives = 31/96 (32%), Gaps = 9/96 (9%)
Query: 281 ASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRGE-GSVQWWRGEREVG-SGPRV 338
+S+ + + RL ++ V+W + +E+ SG +
Sbjct: 8 SSMDE----KKSTAFQKKLEPAYQVSKGHKIRLTVELADHDAEVKWLKNGQEIQMSGSKY 63
Query: 339 NVTGDG---SLVLTDVTKEDSGEYTCVVKSPHGSAS 371
G +L ++ + D Y CVV S
Sbjct: 64 IFESIGAKRTLTISQCSLADDAAYQCVVGGEKCSTE 99
Score = 35.0 bits (81), Expect = 0.018
Identities = 14/108 (12%), Positives = 30/108 (27%), Gaps = 16/108 (14%)
Query: 181 ATLTVQMAP-IVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDN 239
+++ + + ++ ++ G + W+ G + + G +
Sbjct: 8 SSMDEKKSTAFQKKLEPAYQVSKGHKIRLTVELAD-HDAEVKWLKNG-QEIQMSGSKY-- 63
Query: 240 IQAEITSDG-MNLLKIQNVSRT-AAPLIILCLGVNAAGSDLARASLTV 285
S G L I S A C+ G + L V
Sbjct: 64 ---IFESIGAKRTLTISQCSLADDA--AYQCV----VGGEKCSTELFV 102
>2crm_A Fibronectin type-III domain containing protein 3A; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 120
Score = 68.2 bits (167), Expect = 6e-14
Identities = 19/101 (18%), Positives = 35/101 (34%), Gaps = 12/101 (11%)
Query: 398 PGPPTKPTLVNQ-TANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWV 456
PG P KP++ + ++ + W G +++ Y VEM + +
Sbjct: 18 PGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMA-----------EGSNGNKW 66
Query: 457 RVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLS 497
+ + + L G Y V ++ G SA S
Sbjct: 67 EMIYSGATREHLCDRLNPGCFYRLRVYCISDGGQSAVSESL 107
Score = 45.1 bits (107), Expect = 7e-06
Identities = 23/118 (19%), Positives = 40/118 (33%), Gaps = 5/118 (4%)
Query: 626 GKPSNLRAVRTLECEPS--GVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGG 683
S + T +P P + + ++ S + W PP I Y + +
Sbjct: 3 SGSSGVVEFTTCPDKPGIPVKPSVKGKI--HSHSFKITWDPP-KDNGGATINKYVVEMAE 59
Query: 684 GNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGPEP 741
G+N M S +T L L+ G Y + + + G S L+ + P
Sbjct: 60 GSNGNKWEMIYSGATREHLCDRLNPGCFYRLRVYCISDGGQSAVSESLLVQTPAVSGP 117
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3;
structural genomics, joint center for struct genomics,
JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 67.8 bits (165), Expect = 7e-14
Identities = 23/101 (22%), Positives = 35/101 (34%), Gaps = 15/101 (14%)
Query: 100 PYIIRGPKDTTVSASSIIVFECSVGGDA--VLTVHWKRLGSAMPEDRMS----------- 146
P I P+ + S + F CS + +T W A+ + M
Sbjct: 11 PQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGE 70
Query: 147 -VLPSRSLQLSDVRLEDAGEYVCEAENAVGKI-SASATLTV 185
+ + L+L +V G Y C N G S A LT+
Sbjct: 71 LMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTI 111
Score = 62.8 bits (152), Expect = 4e-12
Identities = 21/102 (20%), Positives = 34/102 (33%), Gaps = 14/102 (13%)
Query: 7 EFRVQPKSQRVAAGDTALLEC---GPPRGHPEPTLVWKKNGHPID---------FENSKR 54
+ VQP++Q G C T W + +
Sbjct: 12 QITVQPETQSAIXGSDVSFTCSAASSSD--SPMTFAWXXDNEALQDAEMENYAHLRAQGG 69
Query: 55 LRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRV 96
+ T L +++ T +G YQCV+ N G+ S A L +
Sbjct: 70 ELMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTI 111
Score = 60.9 bits (147), Expect = 2e-11
Identities = 21/104 (20%), Positives = 31/104 (29%), Gaps = 16/104 (15%)
Query: 289 DPNPPPVILFGPANQTLPLRSEARLRCQVRGEG----SVQWWRGEREV-----------G 333
D P P I P Q+ S+ C + W +
Sbjct: 6 DDFPXPQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLR 65
Query: 334 SGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSA-SWSASL 376
+ + L L +V G Y CV+ + GS+ S A L
Sbjct: 66 AQGGELMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXL 109
Score = 47.8 bits (113), Expect = 7e-07
Identities = 18/102 (17%), Positives = 33/102 (32%), Gaps = 6/102 (5%)
Query: 189 PIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDG 248
P + +P G D F C S + + + + +
Sbjct: 11 PQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGE 70
Query: 249 MNL----LKIQNVSRTAAPLIILCLGVNAAGSDLAR-ASLTV 285
+ L+++NV T+ C+ N GS + A LT+
Sbjct: 71 LMEYTTILRLRNVEFTSE-GXYQCVISNHFGSSYSVXAXLTI 111
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 74.0 bits (182), Expect = 7e-14
Identities = 30/96 (31%), Positives = 41/96 (42%), Gaps = 7/96 (7%)
Query: 99 KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHW-----KRLGSAMPEDRMSVLPSRSL 153
P+I+ P+D +S + +C + +V W L A R+SVL +L
Sbjct: 352 APFIMDAPRDLNISEGRMAELKCRT--PPMSSVKWLLPNGTVLSHASRHPRISVLNDGTL 409
Query: 154 QLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAP 189
S V L D G Y C N G +ASA L V A
Sbjct: 410 NFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVSTAG 445
Score = 73.2 bits (180), Expect = 1e-13
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
Query: 292 PPPVILFGPANQTLPLRSEARLRCQVRGEGSVQWWRGEREV----GSGPRVNVTGDGSLV 347
P I+ P + + A L+C+ SV+W V PR++V DG+L
Sbjct: 351 SAPFIMDAPRDLNISEGRMAELKCRTPPMSSVKWLLPNGTVLSHASRHPRISVLNDGTLN 410
Query: 348 LTDVTKEDSGEYTCVVKSPHGSASWSASLR 377
+ V D+G YTC+V + G+++ SA L
Sbjct: 411 FSHVLLSDTGVYTCMVTNVAGNSNASAYLN 440
Score = 60.5 bits (147), Expect = 1e-09
Identities = 26/96 (27%), Positives = 40/96 (41%), Gaps = 10/96 (10%)
Query: 9 RVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLR---LVDGTNLAI 65
P+ ++ G A L+C R P ++ W + S+ R L DGT L
Sbjct: 356 MDAPRDLNISEGRMAELKC---RTPPMSSVKWLLPNGTVLSHASRHPRISVLNDGT-LNF 411
Query: 66 QDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPY 101
+D G Y C+V NVAG +++A + V
Sbjct: 412 SHVLLSDTGVYTCMVTNVAG---NSNASAYLNVSTA 444
Score = 56.7 bits (137), Expect = 2e-08
Identities = 27/107 (25%), Positives = 41/107 (38%), Gaps = 8/107 (7%)
Query: 188 APIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSD 247
AP + + P DL + GR A C P S W+L L + + + +D
Sbjct: 352 APFIMDAPRDLNISEGRMAELKC--RTPPMSSVKWLLPNGTVLSHASRHP---RISVLND 406
Query: 248 GMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPP 294
G L +V + + C+ N AG+ A A L VS +
Sbjct: 407 GT--LNFSHVLLSDTGVYT-CMVTNVAGNSNASAYLNVSTAGTHHHH 450
>2dm4_A Sortilin-related receptor; beta-sandwich, sorting protein-related
receptor containing LDLR class A repeats, sorla; NMR
{Homo sapiens}
Length = 108
Score = 67.5 bits (165), Expect = 8e-14
Identities = 20/108 (18%), Positives = 37/108 (34%), Gaps = 5/108 (4%)
Query: 635 RTLECEPSGVPQLT-DPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMT 693
+ P L ++ W PP +G+IR Y + + +
Sbjct: 2 SSGSSGPDAPRNLQLSLPREAEGVIVGHWAPPI--HTHGLIREYIVEYSRSGSKMWASQR 59
Query: 694 VSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGPEP 741
+++ + NL Y+V +AA G G +S ++ G P
Sbjct: 60 AASNFTEI--KNLLVNTLYTVRVAAVTSRGIGNWSDSKSITTIKGSGP 105
Score = 47.8 bits (114), Expect = 7e-07
Identities = 20/104 (19%), Positives = 29/104 (27%), Gaps = 16/104 (15%)
Query: 394 PSTYPGPPTKPTLV--NQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTA 451
S+ P P L + + W+ + Y VE
Sbjct: 4 GSSGPDAPRNLQLSLPREAEGVIVGHWAPPIHTHGL-IREYIVEYSRSG----------- 51
Query: 452 TATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSP 495
+ W S + NL V YT V A+ S G+ S
Sbjct: 52 SKMWASQ--RAASNFTEIKNLLVNTLYTVRVAAVTSRGIGNWSD 93
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498;
beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 102
Score = 66.7 bits (163), Expect = 1e-13
Identities = 18/98 (18%), Positives = 39/98 (39%), Gaps = 12/98 (12%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV-DGTN--L 63
+ + + + AG +A L C + + W K+G + +S ++R+ G L
Sbjct: 13 KEQPAHREVQAEAGASATLSC--EVAQAQTEVTWYKDGKKL--SSSSKVRVEAVGCTRRL 68
Query: 64 AIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPY 101
+Q + + + G Y C + L+V + +
Sbjct: 69 VVQQAGQAEAGEYSCEAGG-----QQLSFRLQVAGQCF 101
Score = 66.3 bits (162), Expect = 2e-13
Identities = 20/101 (19%), Positives = 37/101 (36%), Gaps = 12/101 (11%)
Query: 275 GSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG-EGSVQWWRGEREVG 333
GS + + + P + A L C+V + V W++ +++
Sbjct: 1 GSSGSSGKVVFAKEQP--------AHREVQAEAGASATLSCEVAQAQTEVTWYKDGKKLS 52
Query: 334 SGPRVNVTGDG---SLVLTDVTKEDSGEYTCVVKSPHGSAS 371
S +V V G LV+ + ++GEY+C S
Sbjct: 53 SSSKVRVEAVGCTRRLVVQQAGQAEAGEYSCEAGGQQLSFR 93
Score = 64.7 bits (158), Expect = 7e-13
Identities = 23/106 (21%), Positives = 37/106 (34%), Gaps = 13/106 (12%)
Query: 85 GTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPE-D 143
G+ S+ V+ +P ++ A + C V V W + G +
Sbjct: 1 GSSGSSGKVVFAKEQP----AHREVQAEAGASATLSCEVAQAQT-EVTWYKDGKKLSSSS 55
Query: 144 RMSVLP---SRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQ 186
++ V +R L + +AGEY CEA S L V
Sbjct: 56 KVRVEAVGCTRRLVVQQAGQAEAGEYSCEAGGQ----QLSFRLQVA 97
Score = 37.0 bits (86), Expect = 0.004
Identities = 19/115 (16%), Positives = 34/115 (29%), Gaps = 19/115 (16%)
Query: 175 GKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPG 234
G +S + + +++ E G A C + W +G +
Sbjct: 1 GSSGSSGKVVF---AKEQPAHREVQAEAGASATLSCEV-AQAQTEVTWYKDGK--KLSSS 54
Query: 235 DRVDNIQAEITSDGMN-LLKIQNVSRT-AAPLIILCLGVNAAGSDLARASLTVSG 287
+V + + G L +Q + A C AG L V+G
Sbjct: 55 SKV-----RVEAVGCTRRLVVQQAGQAEAG--EYSCE----AGGQQLSFRLQVAG 98
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 73.2 bits (180), Expect = 1e-13
Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 5/93 (5%)
Query: 99 KPYII-RGPKDTTVSASSIIVFECSVGGDAVLTVHWK----RLGSAMPEDRMSVLPSRSL 153
+ I R + V + F C GD + W L SA R++V P +L
Sbjct: 384 RARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGTL 443
Query: 154 QLSDVRLEDAGEYVCEAENAVGKISASATLTVQ 186
++ +++D G Y+C A NA G S A L V+
Sbjct: 444 EVRYAQVQDNGTYLCIAANAGGNDSMPAHLHVR 476
Score = 65.1 bits (159), Expect = 5e-11
Identities = 17/91 (18%), Positives = 33/91 (36%), Gaps = 5/91 (5%)
Query: 292 PPPVILFGPANQTLPLRSEARLRCQVRG--EGSVQWWRGEREV---GSGPRVNVTGDGSL 346
+ + + C+ G ++ W + + S R+ V DG+L
Sbjct: 384 RARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGTL 443
Query: 347 VLTDVTKEDSGEYTCVVKSPHGSASWSASLR 377
+ +D+G Y C+ + G+ S A L
Sbjct: 444 EVRYAQVQDNGTYLCIAANAGGNDSMPAHLH 474
Score = 62.4 bits (152), Expect = 4e-10
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 3/87 (3%)
Query: 11 QPKSQRVAAGDTALLECGPPRGHPEPTLVWKK-NGHPIDFENSKRLRLVDGTNLAIQDSR 69
+ + V G T C G P P ++W H + +++ RL + L ++ ++
Sbjct: 391 KAQQVFVDEGHTVQFVC-RADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGTLEVRYAQ 449
Query: 70 KTDDGRYQCVVKNVAGTRESTDAVLRV 96
D+G Y C+ N G +S A L V
Sbjct: 450 VQDNGTYLCIAANAGGN-DSMPAHLHV 475
Score = 54.3 bits (131), Expect = 1e-07
Identities = 23/104 (22%), Positives = 41/104 (39%), Gaps = 7/104 (6%)
Query: 183 LTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQA 242
T + A I + + ++ G F+C +G PPP+ W+ + N +
Sbjct: 380 FTCRRARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLV----SAKSNGRL 435
Query: 243 EITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVS 286
+ DG L+++ + C+ NA G+D A L V
Sbjct: 436 TVFPDGT--LEVRYAQVQDNGTYL-CIAANAGGNDSMPAHLHVR 476
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF
receptor, cancer, immune system-transfer complex; HET:
NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Length = 122
Score = 66.3 bits (161), Expect = 3e-13
Identities = 14/101 (13%), Positives = 29/101 (28%), Gaps = 14/101 (13%)
Query: 106 PKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSR-------------- 151
+S +V C+ + + + + + ++
Sbjct: 15 SHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLS 74
Query: 152 SLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVR 192
+L + V D G Y C A + + S + V P V
Sbjct: 75 TLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVA 115
Score = 59.0 bits (142), Expect = 1e-10
Identities = 16/103 (15%), Positives = 34/103 (33%), Gaps = 15/103 (14%)
Query: 12 PKSQRVAAGDTALLEC---GPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN------ 62
++ G+ +L C + W+ + L +
Sbjct: 15 SHGIELSVGEKLVLNCTARTEL--NVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKF 72
Query: 63 ---LAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYI 102
L I ++D G Y C + T++++ +RV KP++
Sbjct: 73 LSTLTIDGVTRSDQGLYTCAASSGLMTKKNS-TFVRVHEKPFV 114
Score = 57.4 bits (138), Expect = 4e-10
Identities = 19/107 (17%), Positives = 31/107 (28%), Gaps = 15/107 (14%)
Query: 286 SGPDPNPPPVILFGPANQTLPLRSEARLRCQVRGEGS--VQW-------------WRGER 330
+ P V+L L + + L C R E + + +
Sbjct: 1 ADPGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRD 60
Query: 331 EVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLR 377
+L + VT+ D G YTC S + S +R
Sbjct: 61 LKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVR 107
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A*
1ow0_C*
Length = 218
Score = 68.7 bits (168), Expect = 3e-13
Identities = 27/164 (16%), Positives = 44/164 (26%), Gaps = 6/164 (3%)
Query: 9 RVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDS 68
+ S + + ++C R L+ KN + + I
Sbjct: 13 SAKS-SPVIPLDGSVKIQCQAIREAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHM 71
Query: 69 RKTDDGRYQCVVKNVAGTRESTDA----VLRVLVKPYIIRGPKDTTVSASSIIVFECSVG 124
GRYQC + +D V + KP++ + I CS
Sbjct: 72 DANKAGRYQCQYRIGHYRFRYSDTLELVVTGLYGKPFLSADR-GLVLMPGENISLTCSSA 130
Query: 125 GDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVC 168
+ G S + L V L +G Y C
Sbjct: 131 HIPFDRFSLAKEGELSLPQHQSGEHPANFSLGPVDLNVSGIYRC 174
Score = 47.6 bits (113), Expect = 6e-06
Identities = 15/91 (16%), Positives = 29/91 (31%), Gaps = 6/91 (6%)
Query: 292 PPPVILFGPANQTLPLRSEARLRCQVRGEGSVQWWRGEREVGSGPRVNVTGDGS-----L 346
P P I + +PL +++CQ E + + +
Sbjct: 8 PMPFISAKS-SPVIPLDGSVKIQCQAIREAYLTQLMIIKNSTYREIGRRLKFWNETDPEF 66
Query: 347 VLTDVTKEDSGEYTCVVKSPHGSASWSASLR 377
V+ + +G Y C + H +S +L
Sbjct: 67 VIDHMDANKAGRYQCQYRIGHYRFRYSDTLE 97
Score = 40.2 bits (94), Expect = 0.002
Identities = 23/145 (15%), Positives = 42/145 (28%), Gaps = 11/145 (7%)
Query: 96 VLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLT-VHWKRLGSAMPEDRMSVLPSRS-- 152
P+I + + +C +A LT + + + R + +
Sbjct: 6 DFPMPFISAKS-SPVIPLDGSVKIQCQAIREAYLTQLMIIKNSTYREIGRRLKFWNETDP 64
Query: 153 -LQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMA-----PIVRERPSDLRLEVGRDA 206
+ + AG Y C+ + S TL + + P + + L G +
Sbjct: 65 EFVIDHMDANKAGRYQCQYRIGHYRFRYSDTLELVVTGLYGKPFLSADRGLV-LMPGENI 123
Query: 207 VFLCGIEGSPPPSTFWMLEGNRSLI 231
C P EG SL
Sbjct: 124 SLTCSSAHIPFDRFSLAKEGELSLP 148
Score = 38.7 bits (90), Expect = 0.004
Identities = 24/190 (12%), Positives = 45/190 (23%), Gaps = 14/190 (7%)
Query: 189 PIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFW-MLEGNRSLIYPGDRVDNIQAEITSD 247
P + + S + + + C + M+ N + G + + ++
Sbjct: 10 PFISAKSSPV-IPLDGSVKIQC--QAIREAYLTQLMIIKNSTYREIGR-----RLKFWNE 61
Query: 248 GMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPL 307
I ++ A C +L + P + L
Sbjct: 62 TDPEFVIDHMDANKAGRYQ-CQYRIGHYRFRYSDTLELVVTGLYGKPFLSADR-GLVLMP 119
Query: 308 RSEARLRCQVRGEG--SVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKS 365
L C + E E+ + + L V SG Y C
Sbjct: 120 GENISLTCSSAHIPFDRFSLAK-EGELSLPQHQSGEHPANFSLGPVDLNVSGIYRCYGWY 178
Query: 366 PHGSASWSAS 375
WS
Sbjct: 179 NRSPYLWSFP 188
>2ed8_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 106
Score = 65.4 bits (160), Expect = 4e-13
Identities = 24/101 (23%), Positives = 39/101 (38%), Gaps = 4/101 (3%)
Query: 641 PSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPT 700
G + V + TS+L+ W+PP NG ++ Y++ + N+ V +
Sbjct: 7 GPGPVENLQAVSTSPTSILITWEPPA--YANGPVQGYRLFCTEVSTGKEQNIEVD--GLS 62
Query: 701 LLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGPEP 741
L L YS+ A NR G G + + S P
Sbjct: 63 YKLEGLKKFTEYSLRFLAYNRYGPGVSTDDITVVTLSDSGP 103
Score = 51.5 bits (124), Expect = 3e-08
Identities = 19/113 (16%), Positives = 37/113 (32%), Gaps = 23/113 (20%)
Query: 394 PSTYPGPPTKPTLVNQTANGLTLAWS---RNNQIGSSSLLGYQVEMYSRPLPSSSPSGDT 450
S+ PGP V+ + + + W N + GY++ +
Sbjct: 4 GSSGPGPVENLQAVSTSPTSILITWEPPAYANGP----VQGYRLFCT-----------EV 48
Query: 451 ATATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLR 503
+T + + S + L Y+ A N +G P +D+I +
Sbjct: 49 STGKEQNIEVDGLS--YKLEGLKKFTEYSLRFLAYNRYG---PGVSTDDITVV 96
Score = 34.1 bits (79), Expect = 0.042
Identities = 13/90 (14%), Positives = 32/90 (35%), Gaps = 7/90 (7%)
Query: 551 EVKPMTSTSVKLTWE--ILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLA 608
+ + TS+ +TWE ++G ++ + + + + + GL
Sbjct: 15 QAVSTSPTSILITWEPPAYANGPVQGYRLFCTEVSTGKEQNIEV-----DGLSYKLEGLK 69
Query: 609 HYSRYEFFLVPFFGSVDGKPSNLRAVRTLE 638
++ Y + + G ++ V TL
Sbjct: 70 KFTEYSLRFLAYNRYGPGVSTDDITVVTLS 99
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding
protein C, immunoglobulin domain, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Length = 100
Score = 64.7 bits (158), Expect = 6e-13
Identities = 20/96 (20%), Positives = 30/96 (31%), Gaps = 12/96 (12%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV-DGTN--LA 64
++ + +V G P+ + W KNG I S + G L
Sbjct: 11 AKILDPAYQVDKGGRVRFVV--ELADPKLEVKWYKNGQEI--RPSTKYIFEHKGCQRILF 66
Query: 65 IQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKP 100
I + + TDD Y + E L V P
Sbjct: 67 INNCQMTDDSEYYVTAGD-----EKCSTELFVRSGP 97
Score = 63.2 bits (154), Expect = 2e-12
Identities = 13/77 (16%), Positives = 24/77 (31%), Gaps = 8/77 (10%)
Query: 309 SEARLRCQVRG-EGSVQWWRGEREVGSGPRVNVTGDG---SLVLTDVTKEDSGEYTCVVK 364
R ++ + V+W++ +E+ + G L + + D EY
Sbjct: 24 GRVRFVVELADPKLEVKWYKNGQEIRPSTKYIFEHKGCQRILFINNCQMTDDSEYYVTA- 82
Query: 365 SPHGSASWSASLRFESP 381
G S L S
Sbjct: 83 ---GDEKCSTELFVRSG 96
Score = 61.2 bits (149), Expect = 1e-11
Identities = 16/96 (16%), Positives = 30/96 (31%), Gaps = 10/96 (10%)
Query: 99 KPYIIRGPKD-TTVSASSIIVFECSVGGDAVLTVHWKRLGSAM-PEDRMSVLP---SRSL 153
+ V + F + + V W + G + P + R L
Sbjct: 7 GAAFAKILDPAYQVDKGGRVRFVVELADPKL-EVKWYKNGQEIRPSTKYIFEHKGCQRIL 65
Query: 154 QLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAP 189
+++ ++ D EY A + S L V+ P
Sbjct: 66 FINNCQMTDDSEYYVTAGDE----KCSTELFVRSGP 97
>2e7h_A Ephrin type-B receptor 4; FN3 domain, tyrosine- protein kinase
receptor HTK, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 109
Score = 64.4 bits (157), Expect = 1e-12
Identities = 20/96 (20%), Positives = 34/96 (35%), Gaps = 4/96 (4%)
Query: 636 TLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVG-GGNNSALINMTV 694
+ P V + + +S+ L W P +G + Y++ G +
Sbjct: 3 SGSSGPPAVSDIR-VTRSSPSSLSLAWAVPR--APSGAVLDYEVKYHEKGAEGPSSVRFL 59
Query: 695 SASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRP 730
S L L G Y V + A + AG GP+ +
Sbjct: 60 KTSENRAELRGLKRGASYLVQVRARSEAGYGPFGQE 95
Score = 55.2 bits (133), Expect = 2e-09
Identities = 19/102 (18%), Positives = 38/102 (37%), Gaps = 11/102 (10%)
Query: 394 PSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATA 453
S+ P + + + + L+LAW+ S ++L Y+V+ + G +
Sbjct: 4 GSSGPPAVSDIRVTRSSPSSLSLAWAVPRA-PSGAVLDYEVKYH--------EKGAEGPS 54
Query: 454 TWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSP 495
+ + T+ + L G +Y VRA + G
Sbjct: 55 SVRFLKTSENR--AELRGLKRGASYLVQVRARSEAGYGPFGQ 94
>1x5f_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 120
Score = 64.4 bits (157), Expect = 2e-12
Identities = 19/98 (19%), Positives = 26/98 (26%), Gaps = 10/98 (10%)
Query: 398 PGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVR 457
P P + + L W L Y V + V
Sbjct: 18 PSAPRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTK----------EGIARERVE 67
Query: 458 VATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSP 495
++ +T+ NL Y F V A N HG S
Sbjct: 68 NTSHPGEMQVTIQNLMPATVYIFRVMAQNKHGSGESSA 105
Score = 54.0 bits (130), Expect = 7e-09
Identities = 26/117 (22%), Positives = 42/117 (35%), Gaps = 7/117 (5%)
Query: 628 PSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQII--VGGGN 685
S A T PS + L++ + L W+ P +G TY + G
Sbjct: 5 SSGEHAPATTGPLPSAPRDVV-ASLVSTRFIKLTWRTPA-SDPHGDNLTYSVFYTKEGIA 62
Query: 686 NSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGPEPR 742
+ N + + + NL Y + A N+ G+G S P L + + PE
Sbjct: 63 RERVENTSHPGEM-QVTIQNLMPATVYIFRVMAQNKHGSGESSAP--LRVETQPESG 116
Score = 28.5 bits (64), Expect = 4.7
Identities = 18/100 (18%), Positives = 29/100 (29%), Gaps = 13/100 (13%)
Query: 551 EVKPMTSTSVKLTWE-------ILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFL 603
+++ +KLTW N Y V+ G+ H GE
Sbjct: 25 VASLVSTRFIKLTWRTPASDPHGDNLTYS--VFYTKEGIARERVE---NTSHPGEMQ-VT 78
Query: 604 VTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVRTLECEPSG 643
+ L + Y F ++ G+ S V T
Sbjct: 79 IQNLMPATVYIFRVMAQNKHGSGESSAPLRVETQPESGPS 118
>2edb_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 116
Score = 64.0 bits (156), Expect = 2e-12
Identities = 26/117 (22%), Positives = 39/117 (33%), Gaps = 5/117 (4%)
Query: 625 DGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGG 684
S P L V +++ W PP N V+R Y I G G
Sbjct: 2 SSGSSGPENDLDESQVPDQPSSLH--VRPQTNCIIMSWTPPL--NPNIVVRGYIIGYGVG 57
Query: 685 NNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGPEP 741
+ A + V + + L + Y +SL A N AG G + + + P
Sbjct: 58 SPYAET-VRVDSKQRYYSIERLESSSHYVISLKAFNNAGEGVPLYESATTRSITSGP 113
Score = 44.0 bits (104), Expect = 2e-05
Identities = 17/106 (16%), Positives = 32/106 (30%), Gaps = 14/106 (13%)
Query: 389 FRAPEPSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSG 448
+ S P P+ V N + ++W+ + + GY + Y P
Sbjct: 9 ENDLDESQVPDQPSSLH-VRPQTNCIIMSWTPPLN-PNIVVRGYIIG-YGVGSPY----- 60
Query: 449 DTATATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPS 494
V + ++ L Y ++A N+ G P
Sbjct: 61 ------AETVRVDSKQRYYSIERLESSSHYVISLKAFNNAGEGVPL 100
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI,
thick filament, immunoglobulin domain; NMR {Homo
sapiens} SCOP: b.1.1.4
Length = 139
Score = 64.4 bits (156), Expect = 3e-12
Identities = 25/116 (21%), Positives = 44/116 (37%), Gaps = 32/116 (27%)
Query: 12 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPID----------------------- 48
P + V AG+ L+ P G P PT++W+K +
Sbjct: 25 PDTIVVVAGNKLRLDV-PISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFD 83
Query: 49 ----FENSKRLRLV---DGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVL 97
E R+R+ D + ++ + K D+G Y VKN G + + ++V+
Sbjct: 84 KKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGE-DQVNLTVKVI 138
Score = 59.0 bits (142), Expect = 2e-10
Identities = 23/131 (17%), Positives = 38/131 (29%), Gaps = 38/131 (29%)
Query: 93 VLRVLVKPYII-----RGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAM------- 140
P I R P V A + + + + GD TV W++ +
Sbjct: 7 HSSRQEPPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARP 66
Query: 141 -----------------------PEDRMSVLPSR---SLQLSDVRLEDAGEYVCEAENAV 174
E R+ V ++ + ED G Y +N V
Sbjct: 67 APDAPEDTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPV 126
Query: 175 GKISASATLTV 185
G+ + T+ V
Sbjct: 127 GEDQVNLTVKV 137
Score = 55.1 bits (132), Expect = 4e-09
Identities = 25/112 (22%), Positives = 43/112 (38%), Gaps = 9/112 (8%)
Query: 271 VNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRGEGSVQWWRGER 330
V AG+ L R + +SG +P P +++ A G W ++
Sbjct: 29 VVVAGNKL-RLDVPISG---DPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDK 84
Query: 331 EVG--SGPRVNVT---GDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLR 377
++ + RV V + KED G YT VK+P G + +++
Sbjct: 85 KLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVK 136
Score = 39.0 bits (90), Expect = 0.001
Identities = 14/126 (11%), Positives = 28/126 (22%), Gaps = 36/126 (28%)
Query: 189 PIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEI---- 244
P + + G I G P P+ W + P + +
Sbjct: 19 DCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSD 78
Query: 245 -------------------TSDGMNLLKIQNVSR------TAAPLIILCLGVNAAGSDLA 279
T+ ++ ++ + T N G D
Sbjct: 79 EWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYT-------VTVKNPVGEDQV 131
Query: 280 RASLTV 285
++ V
Sbjct: 132 NLTVKV 137
>3t04_D Monobody 7C12; engineered binding protein, antibody mimic,
protein-protein SH2 domain, ATP-binding, phosphoprotein;
2.10A {Homo sapiens}
Length = 103
Score = 62.5 bits (152), Expect = 4e-12
Identities = 20/92 (21%), Positives = 36/92 (39%), Gaps = 3/92 (3%)
Query: 638 ECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVG-GGNNSALINMTVSA 696
S VP + V TS+ + W ++ Y+I G G +S + TV
Sbjct: 4 GSSVSSVPTKLEVVDATPTSLKISWDAYYS--SWQNVKYYRITYGETGGDSPVQEFTVPG 61
Query: 697 STPTLLLTNLSAGIRYSVSLAATNRAGTGPYS 728
T ++ L G+ Y++++ A + G
Sbjct: 62 YYSTATISGLKPGVDYTITVYAYDTFFPGYEP 93
Score = 44.4 bits (105), Expect = 1e-05
Identities = 19/102 (18%), Positives = 36/102 (35%), Gaps = 11/102 (10%)
Query: 393 EPSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTAT 452
S+ PTK +V+ T L ++W ++ Y++ Y +G +
Sbjct: 3 SGSSVSSVPTKLEVVDATPTSLKISWDAYYS-SWQNVKYYRIT-YG-------ETGGDSP 53
Query: 453 ATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPS 494
V + T++ L G+ YT V A ++
Sbjct: 54 VQEFTVPGYYST--ATISGLKPGVDYTITVYAYDTFFPGYEP 93
Score = 34.0 bits (78), Expect = 0.049
Identities = 17/81 (20%), Positives = 29/81 (35%), Gaps = 4/81 (4%)
Query: 551 EVKPMTSTSVKLTWE--ILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLA 608
EV T TS+K++W+ + ++ I + V TV G S ++GL
Sbjct: 15 EVVDATPTSLKISWDAYYSSWQNVKYYRITYGETGGDSPVQEFTV--PGYYSTATISGLK 72
Query: 609 HYSRYEFFLVPFFGSVDGKPS 629
Y + + G
Sbjct: 73 PGVDYTITVYAYDTFFPGYEP 93
>1wfu_A Unnamed protein product; FN3 domain, similar to 1700007B22RIK
protein, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: b.1.2.1
Length = 120
Score = 62.7 bits (152), Expect = 5e-12
Identities = 14/101 (13%), Positives = 27/101 (26%), Gaps = 8/101 (7%)
Query: 398 PGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVR 457
P P + T + + L W + + D ++
Sbjct: 16 LSKPHPPVVGKVTHHSIELYWDLEQKEKRQGPQEQWLRFSIE-------EEDPKMHSYGV 68
Query: 458 VATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSD 498
+ T + V L Y F ++ + G SP+
Sbjct: 69 IYTG-YATRHVVEGLEPRTLYKFRLKVTSPSGEYEYSPVVS 108
Score = 48.4 bits (115), Expect = 5e-07
Identities = 20/117 (17%), Positives = 32/117 (27%), Gaps = 6/117 (5%)
Query: 629 SNLRAVRTLECEPSGVPQLTDPVLLNAT--SVLLKWKPPPVGTHNGVI--RTYQIIVGGG 684
S + + P P PV+ T S+ L W G I
Sbjct: 3 SGSSGMEPHKVVPLSKPH--PPVVGKVTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEED 60
Query: 685 NNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGPEP 741
+ + ++ L Y L T+ +G YS ++ T P
Sbjct: 61 PKMHSYGVIYTGYATRHVVEGLEPRTLYKFRLKVTSPSGEYEYSPVVSVATTRESGP 117
Score = 29.9 bits (67), Expect = 1.4
Identities = 21/92 (22%), Positives = 38/92 (41%), Gaps = 6/92 (6%)
Query: 556 TSTSVKLTWEILNTD----YIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYS 611
T S++L W++ + E +S + P + + + G A+ +V GL +
Sbjct: 28 THHSIELYWDLEQKEKRQGPQEQWLRFSIEEEDPKMHSYGVI-YTGYATRHVVEGLEPRT 86
Query: 612 RYEFFLVPFFGSVDGKPSN-LRAVRTLECEPS 642
Y+F L S + + S + T E PS
Sbjct: 87 LYKFRLKVTSPSGEYEYSPVVSVATTRESGPS 118
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 67.2 bits (164), Expect = 7e-12
Identities = 16/106 (15%), Positives = 33/106 (31%), Gaps = 4/106 (3%)
Query: 11 QPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRK 70
+ + GDT + C + + + + + S V +L + +
Sbjct: 252 KESAWEAHLGDTLTIRC-DTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNGDLFFKKVQV 310
Query: 71 TDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSI 116
D G Y C + + V + + G DT +A+
Sbjct: 311 EDGGVYTCYAMGETFNET---LSVELKVYNFTLHGHHDTLNAAADP 353
Score = 63.3 bits (154), Expect = 1e-10
Identities = 23/105 (21%), Positives = 41/105 (39%), Gaps = 6/105 (5%)
Query: 300 PANQTLPLRSEARLRCQVRGEG-SVQWW--RGEREVGSGPRVNVT-GDGSLVLTDVTKED 355
+ L +RC + +G + W E+ + G +V+ +G L V ED
Sbjct: 253 ESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNGDLFFKKVQVED 312
Query: 356 SGEYTCVVKSPHGSASWSASLRFESPT--NPNIGFFRAPEPSTYP 398
G YTC + + S L+ + T + A +P ++P
Sbjct: 313 GGVYTCYAMGETFNETLSVELKVYNFTLHGHHDTLNAAADPWSHP 357
Score = 61.0 bits (148), Expect = 8e-10
Identities = 15/116 (12%), Positives = 26/116 (22%), Gaps = 14/116 (12%)
Query: 106 PKDTTVSASSIIVFECSVGGDAVLTVHW---KRLGSAMPEDRMSVLPSRSLQLSDVRLED 162
+ C + V + + + + L V++ED
Sbjct: 253 ESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNGDLFFKKVQVED 312
Query: 163 AGEYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPP 218
G Y C A + S L V + G + P
Sbjct: 313 GGVYTCYAMGETFNETLSVELKVYNFTL-----------HGHHDTLNAAADPWSHP 357
Score = 48.7 bits (116), Expect = 6e-06
Identities = 9/101 (8%), Positives = 23/101 (22%), Gaps = 8/101 (7%)
Query: 194 RPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLK 253
+ S +G C + + + ++ +G L
Sbjct: 252 KESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNE--QVLSQGSNGSV---SVRNGD--LF 304
Query: 254 IQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPP 294
+ V + C + ++ L V +
Sbjct: 305 FKKVQVEDGGVYT-CYAMGETFNETLSVELKVYNFTLHGHH 344
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural
genomics, PSI-biology, NEW YORK struc genomics research
consortium, nysgrc; 2.30A {Homo sapiens}
Length = 124
Score = 61.9 bits (150), Expect = 1e-11
Identities = 16/115 (13%), Positives = 32/115 (27%), Gaps = 16/115 (13%)
Query: 100 PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGS---------AMPEDRMSVLPS 150
+ + TV + +C ++ W + + +L
Sbjct: 2 GSLTNHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHH 61
Query: 151 R----SLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAP--IVRERPSDLR 199
S+ + +V L+D G Y C + + + V PS R
Sbjct: 62 SANQLSITVPNVTLQDEGVYKCLH-YSDSVSTKEVKVIVLATMKGEFCRYPSHWR 115
Score = 53.5 bits (128), Expect = 1e-08
Identities = 16/88 (18%), Positives = 27/88 (30%), Gaps = 14/88 (15%)
Query: 294 PVILFGPANQTLPLRSEARLRCQVRGEG--SVQWWR--------GEREVGSGPRVNVT-- 341
+ T+ L+C S+QW E V + +
Sbjct: 2 GSLTNHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHH 61
Query: 342 --GDGSLVLTDVTKEDSGEYTCVVKSPH 367
S+ + +VT +D G Y C+ S
Sbjct: 62 SANQLSITVPNVTLQDEGVYKCLHYSDS 89
Score = 53.1 bits (127), Expect = 2e-08
Identities = 16/104 (15%), Positives = 38/104 (36%), Gaps = 13/104 (12%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVW-KKNGHPIDFENSK-----RLRLVDG 60
++ V G T L+C +L W +G I + +L+
Sbjct: 3 SLTNHTETITVEEGQTLTLKC-VTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHH 61
Query: 61 T----NLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKP 100
+ ++ + + D+G Y+C+ + + + + + + VL
Sbjct: 62 SANQLSITVPNVTLQDEGVYKCLHYSDSVS--TKEVKVIVLATM 103
Score = 38.1 bits (88), Expect = 0.003
Identities = 11/75 (14%), Positives = 21/75 (28%), Gaps = 4/75 (5%)
Query: 187 MAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRV---DNIQAE 243
M + + +E G+ C S W+ ++ V Q
Sbjct: 1 MGSLT-NHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLL 59
Query: 244 ITSDGMNLLKIQNVS 258
S + + NV+
Sbjct: 60 HHSANQLSITVPNVT 74
>1wf5_A Sidekick 2 protein; FNIII domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 121
Score = 61.6 bits (150), Expect = 1e-11
Identities = 25/107 (23%), Positives = 39/107 (36%), Gaps = 17/107 (15%)
Query: 398 PGPPTKP--TLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATW 455
P P P TL + L W++ G+S L+ Y +EM A W
Sbjct: 18 PHAPEHPVATLSTVERRAINLTWTKPFD-GNSPLIRYILEMS------------ENNAPW 64
Query: 456 VRVATNVPSPIL--TVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEI 500
+ +V TV L +Y F + A+N G S ++ +
Sbjct: 65 TVLLASVDPKATSVTVKGLVPARSYQFRLCAVNDVGKGQFSKDTERV 111
Score = 41.2 bits (97), Expect = 2e-04
Identities = 17/95 (17%), Positives = 32/95 (33%), Gaps = 7/95 (7%)
Query: 640 EPSGVPQLTDPVLLNAT--SVLLKWKPPPVGTHNGVIRTY--QIIVGGGNNSALINMTVS 695
+ P+ L ++ L W P N + Y ++ + L+ +V
Sbjct: 16 QLPHAPEHPVATLSTVERRAINLTWTKPF--DGNSPLIRYILEMSENNAPWTVLLA-SVD 72
Query: 696 ASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRP 730
++ + L Y L A N G G +S+
Sbjct: 73 PKATSVTVKGLVPARSYQFRLCAVNDVGKGQFSKD 107
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet,
C2-SET immunoglobulin superfamily, H-bonded G strand
PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4
b.1.1.4 PDB: 1xmw_A
Length = 186
Score = 63.4 bits (153), Expect = 1e-11
Identities = 34/188 (18%), Positives = 59/188 (31%), Gaps = 34/188 (18%)
Query: 11 QPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRK 70
+ + +G + L C + L W+KNG + ++ K L L D S
Sbjct: 5 NIEYKVSISGTSVELTC---PLDSDENLKWEKNGQELPQKHDKHLVLQDF-------SEV 54
Query: 71 TDDGRYQCVVKN-------------VAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSII 117
D G Y C + DA + K + T A +++
Sbjct: 55 EDSGYYVCYTPASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLV 114
Query: 118 VFECSVGGDAVL--------TVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCE 169
+ S G +VL T+ W + GS + + + L + + G Y C+
Sbjct: 115 QVDGSRGDGSVLLTCGLTDKTIKWLKDGSIISPLNAT---KNTWNLGNNAKDPRGTYQCQ 171
Query: 170 AENAVGKI 177
Sbjct: 172 GAKETSNP 179
Score = 42.9 bits (100), Expect = 1e-04
Identities = 19/98 (19%), Positives = 36/98 (36%), Gaps = 11/98 (11%)
Query: 312 RLRCQVRGEGSVQWWRGEREVGSGPRVNVTGDGSLVLTDVTK-EDSGEYTCVVKSPHGSA 370
L C + + +++W + +E+ D LVL D ++ EDSG Y C + + +
Sbjct: 18 ELTCPLDSDENLKWEKNGQELPQKH------DKHLVLQDFSEVEDSGYYVCYTPASNKNT 71
Query: 371 SWSASLRFESPTNPNIGFFR----APEPSTYPGPPTKP 404
R S + + + + G T
Sbjct: 72 YLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNK 109
Score = 38.3 bits (88), Expect = 0.005
Identities = 10/78 (12%), Positives = 21/78 (26%), Gaps = 5/78 (6%)
Query: 286 SGPDPNPPPVILFGPANQTLPLRSEARLRCQVRGEGSVQWWRGEREVGSGPRVNVTGDGS 345
+ D + L C + + +++W + + T
Sbjct: 100 AKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGLTDK-TIKWLKDGSIISPLNATKNT---- 154
Query: 346 LVLTDVTKEDSGEYTCVV 363
L + K+ G Y C
Sbjct: 155 WNLGNNAKDPRGTYQCQG 172
>1x5i_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 126
Score = 61.7 bits (150), Expect = 1e-11
Identities = 30/123 (24%), Positives = 44/123 (35%), Gaps = 10/123 (8%)
Query: 625 DGKPSNLRAVRTLE-----CEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQI 679
G ++ + T E VP V TS+++ W PP N V+R Y I
Sbjct: 6 SGPATDWLSAETFESDLDETRVPEVPSSLH-VRPLVTSIVVSWTPPE--NQNIVVRGYAI 62
Query: 680 IVGGGNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTG-PYSRPALLSLTSG 738
G G+ A + V + NL Y ++L A N G G P A+ +
Sbjct: 63 GYGIGSPHAQT-IKVDYKQRYYTIENLDPSSHYVITLKAFNNVGEGIPLYESAVTRPHTS 121
Query: 739 PEP 741
Sbjct: 122 GPS 124
Score = 42.1 bits (99), Expect = 1e-04
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 23/136 (16%)
Query: 368 GSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSS 427
S + L E+ + + + P P+ V + ++W+
Sbjct: 5 SSGPATDWLSAETFESD-------LDETRVPEVPSSLH-VRPLVTSIVVSWTPPENQNIV 56
Query: 428 SLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNS 487
+ GY + Y P + ++V T+ NL Y ++A N+
Sbjct: 57 -VRGYAIG-YGIGSPHAQT---------IKVDYKQRY--YTIENLDPSSHYVITLKAFNN 103
Query: 488 HGLSAPSPLSDEIVLR 503
G P + V R
Sbjct: 104 VGEGIPL--YESAVTR 117
>1x4x_A Fibronectin type-III domain containing protein 3A; FN3,
immunoglobulin-like beta- sandwich fold, KIAA0970,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 106
Score = 60.8 bits (148), Expect = 2e-11
Identities = 15/100 (15%), Positives = 29/100 (29%), Gaps = 14/100 (14%)
Query: 398 PGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVR 457
P P + ++A + W + + Y++E +
Sbjct: 8 PDQCKPPQVTCRSATCAQVNWEVPLS-NGTDVTEYRLEW------------GGVEGSMQI 54
Query: 458 VATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLS 497
P + L+ TY V+AL+ G S +
Sbjct: 55 CYC-GPGLSYEIKGLSPATTYYCRVQALSVVGAGPFSEVV 93
Score = 49.2 bits (118), Expect = 2e-07
Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 7/91 (7%)
Query: 641 PSGVP-QLTDPVLLNA--TSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSAS 697
S P Q P + T + W+ P ++ + Y++ GG S I
Sbjct: 4 GSSGPDQCKPPQVTCRSATCAQVNWEVPL--SNGTDVTEYRLEWGGVEGSMQICYCGPGL 61
Query: 698 TPTLLLTNLSAGIRYSVSLAATNRAGTGPYS 728
+ + LS Y + A + G GP+S
Sbjct: 62 SYEI--KGLSPATTYYCRVQALSVVGAGPFS 90
>2yrz_A Integrin beta-4; GP150, CD104 antigen, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 118
Score = 60.9 bits (148), Expect = 2e-11
Identities = 17/109 (15%), Positives = 36/109 (33%), Gaps = 5/109 (4%)
Query: 625 DGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGG 684
S R P +L L TS+ + W+ P ++ Y +
Sbjct: 2 SSGSSGSHDSRLTAGVPDTPTRLV-FSALGPTSLRVSWQEP---RCERPLQGYSVEYQLL 57
Query: 685 NNSALINMTVSA-STPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPAL 732
N L + + + ++++ +L Y + A ++ G G +
Sbjct: 58 NGGELHRLNIPNPAQTSVVVEDLLPNHSYVFRVRAQSQEGWGREREGVI 106
Score = 57.0 bits (138), Expect = 5e-10
Identities = 20/106 (18%), Positives = 30/106 (28%), Gaps = 20/106 (18%)
Query: 394 PSTYPGPPTKPTLVNQTANGLTLAWSR---NNQIGSSSLLGYQVEMYSRPLPSSSPSGDT 450
+ P PT+ L ++W + GY VE Y
Sbjct: 14 TAGVPDTPTRLVFSALGPTSLRVSWQEPRCERPL-----QGYSVE-YQL----------L 57
Query: 451 ATATWVRV-ATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSP 495
R+ N + V +L +Y F VRA + G
Sbjct: 58 NGGELHRLNIPNPAQTSVVVEDLLPNHSYVFRVRAQSQEGWGRERE 103
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond,
glycoprotein, immunoglobulin membrane, transmembrane;
HET: NAG; 2.21A {Mus musculus}
Length = 108
Score = 59.9 bits (145), Expect = 4e-11
Identities = 21/97 (21%), Positives = 40/97 (41%), Gaps = 14/97 (14%)
Query: 106 PKDTTVSASSIIVFECSVGGDAVLTVHWKRLGS---------AMPEDRMSVLPSR----S 152
++ TV + C V + ++ W A+ ++R+ ++ + S
Sbjct: 13 TQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELS 72
Query: 153 LQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAP 189
+ +SDV L D G+Y C + ++ A LTV P
Sbjct: 73 ISVSDVSLSDEGQYTCSL-FTMPVKTSKAYLTVLGVP 108
Score = 54.1 bits (130), Expect = 4e-09
Identities = 22/101 (21%), Positives = 42/101 (41%), Gaps = 13/101 (12%)
Query: 10 VQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSK------RLRLVDGT-- 61
++ V G TA+L C + +L W + + K R+ LV +
Sbjct: 11 PLTQNVTVVEGGTAILTC-RVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWH 69
Query: 62 --NLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKP 100
++++ D +D+G+Y C + + ++ A L VL P
Sbjct: 70 ELSISVSDVSLSDEGQYTCSL-FTMPVK-TSKAYLTVLGVP 108
Score = 53.3 bits (128), Expect = 8e-09
Identities = 23/107 (21%), Positives = 38/107 (35%), Gaps = 20/107 (18%)
Query: 284 TVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRGEG--SVQWWR--------GEREVG 333
V G P N T+ A L C+V S+QW +++
Sbjct: 2 KVKGSQGQFPL-----TQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKAL 56
Query: 334 SGPRVNVTGDG----SLVLTDVTKEDSGEYTCVVKSPHGSASWSASL 376
R+ + S+ ++DV+ D G+YTC + + A L
Sbjct: 57 RDNRIELVRASWHELSISVSDVSLSDEGQYTCSL-FTMPVKTSKAYL 102
Score = 32.9 bits (75), Expect = 0.10
Identities = 10/69 (14%), Positives = 26/69 (37%), Gaps = 3/69 (4%)
Query: 195 PSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDN---IQAEITSDGMNL 251
++ + G A+ C ++ + S W ++L + + I+ S
Sbjct: 13 TQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELS 72
Query: 252 LKIQNVSRT 260
+ + +VS +
Sbjct: 73 ISVSDVSLS 81
>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon,
CD3-delta, UCHT1-SCFV, immunoglobulin fold,
antibody-antigen complex; 1.90A {Homo sapiens} SCOP:
b.1.1.4
Length = 105
Score = 59.8 bits (144), Expect = 4e-11
Identities = 18/95 (18%), Positives = 38/95 (40%), Gaps = 5/95 (5%)
Query: 6 EEFRVQPKSQRVA-AGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLA 64
E + +V+ +G T +L C +P ++W+ N I + + D +L+
Sbjct: 6 EMGGITQTPYKVSISGTTVILTC---PQYPGSEILWQHNDKNIGGDEDDKNIGSDEDHLS 62
Query: 65 IQDSRKTDD-GRYQCVVKNVAGTRESTDAVLRVLV 98
+++ + + G Y C + + LR V
Sbjct: 63 LKEFSELEQSGYYVCYPRGSKPEDANFYLYLRARV 97
Score = 42.5 bits (99), Expect = 5e-05
Identities = 11/62 (17%), Positives = 23/62 (37%), Gaps = 3/62 (4%)
Query: 313 LRCQVRGEGSVQWWRGEREVGS--GPRVNVTGDGSLVLTDVTK-EDSGEYTCVVKSPHGS 369
L C + W ++ +G + + + L L + ++ E SG Y C +
Sbjct: 26 LTCPQYPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPE 85
Query: 370 AS 371
+
Sbjct: 86 DA 87
Score = 36.3 bits (83), Expect = 0.007
Identities = 14/75 (18%), Positives = 27/75 (36%), Gaps = 7/75 (9%)
Query: 106 PKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPED---RMSVLPSRSLQLSDV-RLE 161
P ++S +++I C + W+ + D + L L + LE
Sbjct: 14 PYKVSISGTTVI-LTCPQ--YPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELE 70
Query: 162 DAGEYVCEAENAVGK 176
+G YVC + +
Sbjct: 71 QSGYYVCYPRGSKPE 85
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune
system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A
4f8q_A
Length = 226
Score = 62.4 bits (151), Expect = 7e-11
Identities = 33/215 (15%), Positives = 63/215 (29%), Gaps = 41/215 (19%)
Query: 6 EEFRVQPKSQRVAA--GDTALLECG--PPRGHPEPTLVWKKNGHP--------------- 46
+F V S + A G+ A L C P L W +
Sbjct: 3 LQFSVLGPSGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDR 62
Query: 47 IDFENSKRLRLVDGT------NLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKP 100
R ++ L I + +D G+Y C ++ + A++ + V
Sbjct: 63 QSAPYRGRTSILRDGITAGKAALRIHNVTASDSGKYLCYFQDGDFYEK---ALVELKVAA 119
Query: 101 YIIRGPKDTTVSASSIIVFEC-SVGGDAVLTVHW-KRLGSAMPEDRMSVLP--------S 150
D I EC S G + W G +P V+ +
Sbjct: 120 LGSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAPVVADGVGLYAVA 179
Query: 151 RSLQLSDVRLEDAGEYVCEAENAVGKISASATLTV 185
S+ + C +++ + +A++++
Sbjct: 180 ASVIMRG---SSGEGVSCTIRSSLLGLEKTASISI 211
Score = 47.4 bits (112), Expect = 7e-06
Identities = 33/220 (15%), Positives = 75/220 (34%), Gaps = 54/220 (24%)
Query: 110 TVSASSIIVFECSVGGDAVL-------------TVHWKRL-----------GSAMPEDRM 145
+ I+ VG DA L + W G + + +
Sbjct: 8 LGPSGPILAM---VGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQS 64
Query: 146 SVLPSR-------------SLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVR 192
+ R +L++ +V D+G+Y+C ++ G A + +++A +
Sbjct: 65 APYRGRTSILRDGITAGKAALRIHNVTASDSGKYLCYFQD--GDFYEKALVELKVAALGS 122
Query: 193 ERPSDLRLEVGRDAVFLCGIEG-SPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNL 251
+ D++ C G P P W G+ + ++A + +DG+ L
Sbjct: 123 DLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNK-------GENIPTVEAPVVADGVGL 175
Query: 252 LKIQ---NVSRTAAPLIILCLGVNAAGSDLARASLTVSGP 288
+ + ++ + C ++ AS++++ P
Sbjct: 176 YAVAASVIMRGSSGEGVS-CTIRSSLLGLEKTASISIADP 214
Score = 43.9 bits (103), Expect = 8e-05
Identities = 32/186 (17%), Positives = 53/186 (28%), Gaps = 61/186 (32%)
Query: 279 ARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRGEGS-----VQW-------- 325
A +V GP P + + G +A L C + S ++W
Sbjct: 1 ADLQFSVLGPSG--PILAMVG---------EDADLPCHLFPTMSAETMELKWVSSSLRQV 49
Query: 326 ---WRGEREVGSG------PRVNV------TGDGSLVLTDVTKEDSGEYTCVVKSPHGSA 370
+ +EV R ++ G +L + +VT DSG+Y C +
Sbjct: 50 VNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNVTASDSGKYLCYFQDGDFYE 109
Query: 371 SWSASLRFESPTNPNIGFFRAPEPST----------YPGP------------PTKPTLVN 408
L+ + + + + YP P PT V
Sbjct: 110 KALVELKVAALGSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAPVV 169
Query: 409 QTANGL 414
GL
Sbjct: 170 ADGVGL 175
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily,
immune system; HET: NAG; 3.00A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Length = 201
Score = 61.9 bits (150), Expect = 7e-11
Identities = 29/195 (14%), Positives = 63/195 (32%), Gaps = 25/195 (12%)
Query: 17 VAAGDTALLECGPPRG---HPEPTLVWKKNGHPI------------DFENSKRLRLVDGT 61
+ A L CG + + W+K + +++N + +
Sbjct: 6 KEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNL 65
Query: 62 NLAIQDSRKTDDGRYQCVVKNVAGT--RESTDAVLRVLV-KPYIIRGPKDTTVSASSIIV 118
++ I R +D+G Y+CVV + A + + V + D + S+I
Sbjct: 66 SIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEIPTSNIRR 125
Query: 119 FEC-SVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDV------RLEDAGEYVCEAE 171
C + GG + W G + +V +L V + ++C +
Sbjct: 126 IICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFNMTTNHSFMCLIK 185
Query: 172 NAVGKISASATLTVQ 186
+++ +
Sbjct: 186 YGHLRVNQTFNWNTA 200
Score = 47.7 bits (113), Expect = 4e-06
Identities = 25/131 (19%), Positives = 39/131 (29%), Gaps = 22/131 (16%)
Query: 119 FECSVGGDAVLTVHWKRLGSA-----------MPE--DRMSVLPSR--SLQLSDVRLEDA 163
SV A ++W++ PE +R + S+ + +R D
Sbjct: 18 HNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDE 77
Query: 164 GEYVCEAENAVGKIS-----ASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEG-SPP 217
G Y C A TL+V+ SD + +C G P
Sbjct: 78 GTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPS-ISDFEIPTSNIRRIICSTSGGFPE 136
Query: 218 PSTFWMLEGNR 228
P W+ G
Sbjct: 137 PHLSWLENGEE 147
Score = 45.0 bits (106), Expect = 3e-05
Identities = 15/80 (18%), Positives = 29/80 (36%), Gaps = 3/80 (3%)
Query: 14 SQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDS---RK 70
+ + + C G PEP L W +NG ++ N+ + + A+
Sbjct: 115 DFEIPTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFNM 174
Query: 71 TDDGRYQCVVKNVAGTREST 90
T + + C++K T
Sbjct: 175 TTNHSFMCLIKYGHLRVNQT 194
Score = 39.6 bits (92), Expect = 0.002
Identities = 21/114 (18%), Positives = 35/114 (30%), Gaps = 26/114 (22%)
Query: 309 SEARLRCQVR------GEGSVQWWRGEREV---GSGP-----------RVNVTGDGSLVL 348
A L C + + W + ++ V SG ++T + S+V+
Sbjct: 10 EVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVI 69
Query: 349 TDVTKEDSGEYTCVVKSPHGS---ASWSASLR---FESPTNPNIGFFRAPEPST 396
+ D G Y CVV A + P+I F P +
Sbjct: 70 LALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEIPTSNI 123
>1x5j_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 113
Score = 59.1 bits (143), Expect = 9e-11
Identities = 16/98 (16%), Positives = 32/98 (32%), Gaps = 2/98 (2%)
Query: 636 TLECEPSGVPQLTDPVLLNATSVLLKWKPPPV--GTHNGVIRTYQIIVGGGNNSALINMT 693
+ P P +L+ ++ + W + R Y + +
Sbjct: 3 SGSSGPMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKN 62
Query: 694 VSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPA 731
+A+T + L+T L Y S+ T + +S A
Sbjct: 63 ANATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTA 100
Score = 42.5 bits (100), Expect = 5e-05
Identities = 16/101 (15%), Positives = 25/101 (24%), Gaps = 14/101 (13%)
Query: 398 PGPPTKPTLVNQTANGLTLAWSRN---NQIGSSSLLGYQVEMYSRPLPSSSPSGDTATAT 454
PP + + + + W+ N + Y V + ++ AT
Sbjct: 9 MMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANATTL 68
Query: 455 WVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSP 495
VT L Y F V S S
Sbjct: 69 SY-----------LVTGLKPNTLYEFSVMVTKGRRSSTWSM 98
Score = 40.2 bits (94), Expect = 4e-04
Identities = 16/95 (16%), Positives = 29/95 (30%), Gaps = 3/95 (3%)
Query: 551 EVKPMTSTSVKLTWE---ILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGL 607
+ ++ ++++TW + I Y+ +LVTGL
Sbjct: 16 QASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANATTLSYLVTGL 75
Query: 608 AHYSRYEFFLVPFFGSVDGKPSNLRAVRTLECEPS 642
+ YEF ++ G S T E
Sbjct: 76 KPNTLYEFSVMVTKGRRSSTWSMTAHGTTFELSGP 110
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 63.3 bits (153), Expect = 1e-10
Identities = 52/333 (15%), Positives = 90/333 (27%), Gaps = 55/333 (16%)
Query: 183 LTVQMAPIVRERPSDLRLEVGRDAVFLC-GIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQ 241
L + P L G C G+E + W+L +
Sbjct: 1 LAPRRCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRK--------PAAGSHP 52
Query: 242 AEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPA 301
+ G LL +++V + C AG L V P P L
Sbjct: 53 SRWAGMGRRLL-LRSVQLHDSGNYS-C---YRAGRPAGTVHLLVDVP---PEEPQLSCFR 104
Query: 302 NQTLPLRSEARLRCQVRGEGSVQWWRGEREVGSGPRVNVT--GDGSLVLTDVTKE----- 354
L + + C W + + + D +
Sbjct: 105 KSPL-----SNVVC---------EWGPRSTPSLTTKAVLLVRKFQNSPAEDFQEPCQYSQ 150
Query: 355 DSGEYTCVVKSPHGSASW-----SASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQ 409
+S +++C + P G +S+ + S + F P T V +
Sbjct: 151 ESQKFSCQLAVPEGDSSFYIVSMCVASSVGSKFSKTQTFQGCGILQPDPPANITVTAVAR 210
Query: 410 TANGLTLAWSRNNQIGSSSL-LGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILT 468
L++ W + SS L +++ Y R S T+
Sbjct: 211 NPRWLSVTWQDPHSWNSSFYRLRFELR-Y-RAERSK---------TFTTWMVKDLQHHCV 259
Query: 469 VTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIV 501
+ + GL + +RA G S S E +
Sbjct: 260 IHDAWSGLRHVVQLRAQEEFGQGEWSEWSPEAM 292
Score = 63.3 bits (153), Expect = 1e-10
Identities = 42/224 (18%), Positives = 64/224 (28%), Gaps = 18/224 (8%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQ 66
V GD+ L C T+ W S+ G L ++
Sbjct: 8 AQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSR--WAGMGRRLLLR 65
Query: 67 DSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKP-----YIIRGPKDTTVSASSIIVFEC 121
+ D G Y C R + L V V P R + V
Sbjct: 66 SVQLHDSGNYSCYRAG----RPAGTVHLLVDVPPEEPQLSCFRKSPLSNVVCEWGPRSTP 121
Query: 122 SVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLS---DVRLEDAGEYV--CEAENAVGK 176
S+ AVL V + A S + S V D+ Y+ ++VG
Sbjct: 122 SLTTKAVLLVRKFQNSPAEDFQEPCQYSQESQKFSCQLAVPEGDSSFYIVSMCVASSVGS 181
Query: 177 ISASATLTVQMAPIVRER-PSDLRLEVGRDAVFLCGIEGSPPPS 219
S T T Q I++ P+++ + + P S
Sbjct: 182 KF-SKTQTFQGCGILQPDPPANITVTAVARNPRWLSVTWQDPHS 224
Score = 60.3 bits (145), Expect = 1e-09
Identities = 33/224 (14%), Positives = 69/224 (30%), Gaps = 10/224 (4%)
Query: 548 ELTEVKPMTSTSVKLTWEILNTDYIEGVYI--YSRGLDPPASVAMLTVLH---AGEASGF 602
+L+ + ++V W +T + + + + PA + + + S
Sbjct: 99 QLSCFRKSPLSNVVCEWGPRSTPSLTTKAVLLVRKFQNSPAEDFQEPCQYSQESQKFSCQ 158
Query: 603 LVTGLAHYSRYEFFLVPF--FGSVDGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLL 660
L S Y + GS K + L+ +P +T V N + +
Sbjct: 159 LAVPEGDSSFYIVSMCVASSVGSKFSKTQTFQGCGILQPDPPANITVT-AVARNPRWLSV 217
Query: 661 KWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATN 720
W+ P + +++ + V ++ + +G+R+ V L A
Sbjct: 218 TWQDPHSWNSSFYRLRFELRYRAERSKTFTTWMVKDLQHHCVIHDAWSGLRHVVQLRAQE 277
Query: 721 RAGTGPYSR--PALLSLTSGPEPRLEDWASQSGRSRGDGTMETD 762
G G +S P + S + T + D
Sbjct: 278 EFGQGEWSEWSPEAMGTPWTESRSPPAENEVSTPMQALTTNKDD 321
>2db8_A Tripartite motif protein 9, isoform 2; ring finger protein 91,
TRIM9, KIAA0282, RNF91, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 110
Score = 58.2 bits (141), Expect = 1e-10
Identities = 22/106 (20%), Positives = 32/106 (30%), Gaps = 14/106 (13%)
Query: 391 APEPSTYPGPPT-KPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGD 449
+ P P + N TL+W + GY +E+ D
Sbjct: 3 SGSSGPVPATPILQLEECCTHNNSATLSWKQPPLSTVP-ADGYILELD-----------D 50
Query: 450 TATATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSP 495
+ V + TV L TY V+A N G+S S
Sbjct: 51 GNGGQFREVYV-GKETMCTVDGLHFNSTYNARVKAFNKTGVSPYSK 95
Score = 50.9 bits (122), Expect = 5e-08
Identities = 23/101 (22%), Positives = 36/101 (35%), Gaps = 3/101 (2%)
Query: 641 PSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPT 700
P+ + + S L WK PP Y + + GN + V T
Sbjct: 10 PATPILQLEECCTHNNSATLSWKQPP--LSTVPADGYILELDDGNGGQFREVYVGKET-M 66
Query: 701 LLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGPEP 741
+ L Y+ + A N+ G PYS+ +L + G P
Sbjct: 67 CTVDGLHFNSTYNARVKAFNKTGVSPYSKTLVLQTSEGSGP 107
>2ed7_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 119
Score = 58.2 bits (141), Expect = 2e-10
Identities = 28/107 (26%), Positives = 44/107 (41%), Gaps = 4/107 (3%)
Query: 625 DGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQI-IVGG 683
S A+ + PS + PVL+++ V L W+PP G I+T+ +
Sbjct: 2 SSGSSGKPAIPSSSVLPSAPRDVV-PVLVSSRFVRLSWRPP--AEAKGNIQTFTVFFSRE 58
Query: 684 GNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRP 730
G+N T + L + NL Y+ + A N G G S+P
Sbjct: 59 GDNRERALNTTQPGSLQLTVGNLKPEAMYTFRVVAYNEWGPGESSQP 105
Score = 57.4 bits (139), Expect = 4e-10
Identities = 25/106 (23%), Positives = 35/106 (33%), Gaps = 13/106 (12%)
Query: 391 APEPSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDT 450
P S P P V ++ + L+W + ++ + V +SR
Sbjct: 11 IPSSSVLPSAPRDVVPVLVSSRFVRLSWRPPAE-AKGNIQTFTVF-FSR----------E 58
Query: 451 ATATWVRVAT-NVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSP 495
+ T S LTV NL YTF V A N G S
Sbjct: 59 GDNRERALNTTQPGSLQLTVGNLKPEAMYTFRVVAYNEWGPGESSQ 104
Score = 30.1 bits (68), Expect = 1.2
Identities = 16/93 (17%), Positives = 29/93 (31%), Gaps = 4/93 (4%)
Query: 551 EVKPMTSTSVKLTWE--ILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLA 608
++S V+L+W I+ ++ A+ T + V L
Sbjct: 25 VPVLVSSRFVRLSWRPPAEAKGNIQTFTVFFSREGDNRERALNTT--QPGSLQLTVGNLK 82
Query: 609 HYSRYEFFLVPFFGSVDGKPSNLRAVRTLECEP 641
+ Y F +V + G+ S V T
Sbjct: 83 PEAMYTFRVVAYNEWGPGESSQPIKVATQPESG 115
>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor
complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1 b.1.2.1 PDB: 1p9m_A
Length = 303
Score = 61.8 bits (149), Expect = 2e-10
Identities = 48/330 (14%), Positives = 89/330 (26%), Gaps = 54/330 (16%)
Query: 195 PSDLRLEVGRDAVFLC-------GIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSD 247
P +++ + +C W + Q I +
Sbjct: 11 PESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNH--------FTIPKEQYTIINR 62
Query: 248 GMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPL 307
+ + +++ L L ++ ++ P P P
Sbjct: 63 TASSVTFTDIASLNIQLTCNILTFGQLEQNVYGITIISGLP-PEKPKN------------ 109
Query: 308 RSEARLRCQVRGEGSVQ-WWRGEREVGSGPRVNVTG-DGSLVLTDVTKEDSGEYTCVVKS 365
L C V ++ W G RE + + D + +C V
Sbjct: 110 -----LSCIVNEGKKMRCEWDGGRETHLETNFTLKSEWATHKFADCKAKRDTPTSCTVDY 164
Query: 366 PHGSASW-----SASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTL--VNQTANGLTLAW 418
A T+ +I F P P PP ++ + ++ L L W
Sbjct: 165 STVYFVNIEVWVEAENALGKVTSDHINF--DPVYKVKPNPPHNLSVINSEELSSILKLTW 222
Query: 419 SRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVGLTY 478
+ N I S +L Y ++ + + T TV +L Y
Sbjct: 223 T-NPSIKSVIILKYNIQYR--------TKDASTWSQIPPEDTASTRSSFTVQDLKPFTEY 273
Query: 479 TFLVRALNSHGLSAPSPLSDEIVLRGTFSE 508
F +R + G S S+E T+ +
Sbjct: 274 VFRIRCMKEDGKGYWSDWSEEASGI-TYED 302
Score = 49.1 bits (116), Expect = 3e-06
Identities = 32/236 (13%), Positives = 66/236 (27%), Gaps = 21/236 (8%)
Query: 3 LLREEFRVQPKSQRVAAGDTALLEC------GPPRGHPEPTLVWKKNGHPIDFENSKRLR 56
LL + P+S V C +VWK N I +
Sbjct: 2 LLDPCGYISPESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIP--KEQYTI 59
Query: 57 LVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSI 116
+ + + + + C + G E + ++ PK+ + +
Sbjct: 60 INRTASSVTFTDIASLNIQLTCNILTF-GQLEQNVYGITIISG-LPPEKPKNLSCIVNEG 117
Query: 117 IVFECS------VGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYV--C 168
C + T+ + + + S + D
Sbjct: 118 KKMRCEWDGGRETHLETNFTLKSEWATHKFADCKAKRDTPTSCTV-DYSTVYFVNIEVWV 176
Query: 169 EAENAVGKISASATLTVQMAPIVR-ERPSDLRLEVGRDAVFLCGIEGSPPPSTFWM 223
EAENA+GK++ S + V+ P +L + + + + + P +
Sbjct: 177 EAENALGKVT-SDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVI 231
Score = 47.9 bits (113), Expect = 9e-06
Identities = 19/180 (10%), Positives = 48/180 (26%), Gaps = 13/180 (7%)
Query: 556 TSTSVKLTWEILNTDYIEGVYI--YSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRY 613
++ W+ ++E + A S + ++
Sbjct: 116 EGKKMRCEWDGGRETHLETNFTLKSEWATHKFADC---KAKRDTPTSCTVDYSTVYFVNI 172
Query: 614 EFFLVPFFGSVDGKPSNLRAVRTLECEPSGVPQLTDPVLLNAT--SVLLKWKPPPVGTHN 671
E ++ ++ S+ + P + + L W P + +
Sbjct: 173 EVWVEAE-NALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIK--S 229
Query: 672 GVIRTYQI---IVGGGNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYS 728
+I Y I S + +++ + + +L Y + G G +S
Sbjct: 230 VIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWS 289
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion
protein, immunoglobulin fold, I-SET fold, cell adhesion
glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
PDB: 1bqs_A*
Length = 210
Score = 59.9 bits (144), Expect = 3e-10
Identities = 30/143 (20%), Positives = 50/143 (34%), Gaps = 11/143 (7%)
Query: 95 RVLVKPYIIRGPKD-TTVSASSIIVFECSV-GGDAVLTVHWKRLGSAMPEDRMSVLPSRS 152
+ VKP + P+ V+ + C + D +V W+ L +++ + S
Sbjct: 2 SLQVKPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGAVQSDTGRS-V 60
Query: 153 LQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAP-IVRERPSDLRLEVGRDAVFLCG 211
L + + L AG VC + L V P + P+ L V D C
Sbjct: 61 LTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLVYAFPNQLTVSPAAL---VPGDPEVACT 117
Query: 212 IEGSPPPS----TFWMLEGNRSL 230
P +F +L G + L
Sbjct: 118 AHKVTPVDPNALSFSLLVGGQEL 140
Score = 50.3 bits (119), Expect = 6e-07
Identities = 19/136 (13%), Positives = 38/136 (27%), Gaps = 12/136 (8%)
Query: 6 EEFRVQPKSQRVAA--GDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNL 63
+ +V+P VA G + L C ++ W+ + + L
Sbjct: 6 KPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSL----GAVQSDTGRSVL 61
Query: 64 AIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSV 123
++++ + G CV G L V P + V + C+
Sbjct: 62 TVRNASLSAAGTRVCVGSC-GGRTFQHTVQLLVYAFPNQLTVSPAALVPGDPEV--ACTA 118
Query: 124 GGDA---VLTVHWKRL 136
+ + L
Sbjct: 119 HKVTPVDPNALSFSLL 134
Score = 45.7 bits (107), Expect = 2e-05
Identities = 30/185 (16%), Positives = 55/185 (29%), Gaps = 21/185 (11%)
Query: 293 PPVILFGPANQT-LPLRSEARLRCQVRG---EGSVQWWRGEREVGSGPRVNVTGDGSLVL 348
P+ + P + L + +L C++ SVQW + +G+ + TG L +
Sbjct: 6 KPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGAVQ--SDTGRSVLTV 63
Query: 349 TDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVN 408
+ + +G CV + + L + N S P P +
Sbjct: 64 RNASLSAAGTRVCVGSCGGRTFQHTVQLLVYAFPN-------QLTVSPAALVPGDPEVAC 116
Query: 409 QTANG-------LTLAWSRNNQ-IGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVAT 460
L+ + Q + + LG +V+ T W
Sbjct: 117 TAHKVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDEDVLFRVTERWRLPPL 176
Query: 461 NVPSP 465
P P
Sbjct: 177 GTPVP 181
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor,
two-domain structure, V-SET, C2-SET, IG-like domain,
6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens}
PDB: 2zg3_A* 2zg2_A
Length = 214
Score = 59.8 bits (144), Expect = 4e-10
Identities = 36/213 (16%), Positives = 64/213 (30%), Gaps = 36/213 (16%)
Query: 8 FRVQ-PKSQRVAAGDTALLEC---GPPRGHPEPTLV---WKKNGHPIDFE-----NSKRL 55
+ +Q KS V G L+ C P R + W ++G + N+
Sbjct: 2 YELQVQKSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDR 61
Query: 56 RLVDGTN---------------LAIQDSRKTDDGRYQCVVKNVAGTRESTD---AVLRVL 97
R+ T L+I D+R D G Y V+ + S L V
Sbjct: 62 RVKPETQGRFRLLGDVQKKNCSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVT 121
Query: 98 VKPYIIRGPKDTTVSASSIIVFECSVGGDAV----LTVHWKRLGSAMPEDRMSVLPSRSL 153
+ + CS+ G LT W + + + S L
Sbjct: 122 ALIEKPDIHFLEPLESGRPTRLSCSLPGSCEAGPPLTFSWTGNALSPLDPETTR--SSEL 179
Query: 154 QLSDVRLEDAGEYVCEAENAVGKISASATLTVQ 186
L+ + C+ + +++ T+ +
Sbjct: 180 TLTPRPEDHGTNLTCQMKRQGAQVTTERTVQLN 212
Score = 42.5 bits (99), Expect = 2e-04
Identities = 21/87 (24%), Positives = 26/87 (29%), Gaps = 8/87 (9%)
Query: 152 SLQLSDVRLEDAGEYVCEAENAVG----KISASATLTVQMAPIVRERPSDLRLEVGRDAV 207
SL + D R+ED G Y E L V + LE GR
Sbjct: 83 SLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFLEPLESGRPTR 142
Query: 208 FLCGI----EGSPPPSTFWMLEGNRSL 230
C + E PP + W L
Sbjct: 143 LSCSLPGSCEAGPPLTFSWTGNALSPL 169
Score = 40.6 bits (94), Expect = 0.001
Identities = 14/99 (14%), Positives = 28/99 (28%), Gaps = 4/99 (4%)
Query: 280 RASLTVSGPDPNPPPVIL-FGPANQTLPLRSEARLRCQVRGEGSVQWWRGEREVGSGPRV 338
+ +L V+ P L + + L C+ + W
Sbjct: 115 KLNLEVTALIEKPDIHFLEPLESGRPTRLSCSLPGSCEAGPPLTFSWTGNALSPLDP--- 171
Query: 339 NVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLR 377
T L LT ++ TC +K + +++
Sbjct: 172 ETTRSSELTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQ 210
Score = 32.9 bits (74), Expect = 0.38
Identities = 17/93 (18%), Positives = 26/93 (27%), Gaps = 5/93 (5%)
Query: 341 TGDGSLVLTDVTKEDSGEYTCVVKS--PHGSASWSASLRFESPTNPNIGFFRAPEPSTYP 398
+ SL + D ED+G Y V+ + L E EP
Sbjct: 79 KKNCSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFLEPLESG 138
Query: 399 GPPTKPTLVNQTANG---LTLAWSRNNQIGSSS 428
P + + LT +W+ N
Sbjct: 139 RPTRLSCSLPGSCEAGPPLTFSWTGNALSPLDP 171
>2kbg_A N-CAM 2, neural cell adhesion molecule 2; fibronectin type III
module, beta-sheet sandwich, cell membrane,
glycoprotein, immunoglobulin domain; NMR {Homo sapiens}
Length = 114
Score = 57.2 bits (138), Expect = 5e-10
Identities = 16/106 (15%), Positives = 35/106 (33%), Gaps = 13/106 (12%)
Query: 398 PGPPTKPTL--VNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATW 455
P+ P++ + L+ ++ + G + +L Y V+ S W
Sbjct: 6 MREPSPPSIHGQPSSGKSFKLSITKQDD-GGAPILEYIVKYRS----------KDKEDQW 54
Query: 456 VRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIV 501
+ + + +L + Y + A N G S P+ +
Sbjct: 55 LEKKVQGNKDHIILEHLQWTMGYEVQITAANRLGYSEPTVYEFSMP 100
Score = 48.7 bits (116), Expect = 4e-07
Identities = 17/90 (18%), Positives = 30/90 (33%), Gaps = 6/90 (6%)
Query: 655 ATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSA-LINMTVSASTPTLLLTNLSAGIRYS 713
S L G I Y + + + V + ++L +L + Y
Sbjct: 21 GKSFKLSITKQDDG--GAPILEYIVKYRSKDKEDQWLEKKVQGNKDHIILEHLQWTMGYE 78
Query: 714 VSLAATNRAGTGPYSRPALLSLTSGPEPRL 743
V + A NR G P + + P+P +
Sbjct: 79 VQITAANRLGYSE---PTVYEFSMPPKPNI 105
Score = 31.7 bits (72), Expect = 0.34
Identities = 12/67 (17%), Positives = 19/67 (28%), Gaps = 4/67 (5%)
Query: 551 EVKPMTSTSVKLTWEILNT--DYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLA 608
+P + S KL+ + I + R D V G ++ L
Sbjct: 15 HGQPSSGKSFKLSITKQDDGGAPILEYIVKYRSKDKEDQWLEKKV--QGNKDHIILEHLQ 72
Query: 609 HYSRYEF 615
YE
Sbjct: 73 WTMGYEV 79
>2dn7_A Receptor-type tyrosine-protein phosphatase F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.2.1
Length = 107
Score = 56.3 bits (136), Expect = 6e-10
Identities = 24/102 (23%), Positives = 35/102 (34%), Gaps = 14/102 (13%)
Query: 395 STYPGPPTKPTLV--NQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTAT 452
S+ P +PT++ N L W ++ LLGY+++
Sbjct: 2 SSGSSGPGRPTMMISTTAMNTALLQWHPPKELPGE-LLGYRLQYC-----------RADE 49
Query: 453 ATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPS 494
A + TVT L G TY F + A N GL
Sbjct: 50 ARPNTIDFGKDDQHFTVTGLHKGTTYIFRLAAKNRAGLGEEF 91
Score = 56.3 bits (136), Expect = 8e-10
Identities = 20/87 (22%), Positives = 31/87 (35%), Gaps = 2/87 (2%)
Query: 655 ATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRYSV 714
+ LL+W PP G + Y++ + + + +T L G Y
Sbjct: 20 MNTALLQWHPPK--ELPGELLGYRLQYCRADEARPNTIDFGKDDQHFTVTGLHKGTTYIF 77
Query: 715 SLAATNRAGTGPYSRPALLSLTSGPEP 741
LAA NRAG G + + P
Sbjct: 78 RLAAKNRAGLGEEFEKEIRTPEDLSGP 104
>3k2m_C Monobody HA4; engineered binding protein, antibody mimic,
protein-protein SH2 domain, ATP-binding, phosphoprotein;
1.75A {Homo sapiens} PDB: 3uyo_D 1ttf_A 1ttg_A 3rzw_A
1fna_A
Length = 101
Score = 55.5 bits (134), Expect = 1e-09
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 653 LNATSVLLKWKPPPVGTHNGVIRTYQIIVG-GGNNSALINMTVSASTPTLLLTNLSAGIR 711
TS+L+ W P + + Y+I G G NS + TV S+ T ++ LS G+
Sbjct: 16 ATPTSLLISWDAPM---SSSSVYYYRITYGETGGNSPVQEFTVPYSSSTATISGLSPGVD 72
Query: 712 YSVSLAATNRAGTGPYSRPALLSLT 736
Y++++ A G + +S+
Sbjct: 73 YTITVYAWGEDSAGYMFMYSPISIN 97
Score = 52.9 bits (127), Expect = 9e-09
Identities = 23/111 (20%), Positives = 40/111 (36%), Gaps = 13/111 (11%)
Query: 395 STYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATAT 454
S+ PTK +V T L ++W + SSS+ Y++ Y +G +
Sbjct: 2 SSVSSVPTKLEVVAATPTSLLISWD--APMSSSSVYYYRIT-YG-------ETGGNSPVQ 51
Query: 455 WVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGT 505
V + + T++ L+ G+ YT V A I +
Sbjct: 52 EFTVPYSSST--ATISGLSPGVDYTITVYAWGEDSAGYMFM-YSPISINYR 99
Score = 33.2 bits (76), Expect = 0.068
Identities = 15/80 (18%), Positives = 30/80 (37%), Gaps = 3/80 (3%)
Query: 551 EVKPMTSTSVKLTWE-ILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAH 609
EV T TS+ ++W+ +++ + I + V TV +S ++GL+
Sbjct: 12 EVVAATPTSLLISWDAPMSSSSVYYYRITYGETGGNSPVQEFTV--PYSSSTATISGLSP 69
Query: 610 YSRYEFFLVPFFGSVDGKPS 629
Y + + G
Sbjct: 70 GVDYTITVYAWGEDSAGYMF 89
>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor,
adhesion, structural genomics, NEW YORK STR genomics
research consortium, nysgrc; 1.70A {Homo sapiens} PDB:
3rq3_A 3udw_A* 3ucr_A
Length = 117
Score = 55.7 bits (134), Expect = 1e-09
Identities = 19/111 (17%), Positives = 36/111 (32%), Gaps = 17/111 (15%)
Query: 102 IIRGPKDTTVSASSIIVFECSVGGDA--VLTVHWKRLGSAMP--------------EDRM 145
I + + I+ +C + V V+W++ + +DR+
Sbjct: 6 TIETTGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRV 65
Query: 146 SVLPSRSLQLSDVRLEDAGEYVCE-AENAVGKISASATLTVQMAPIVRERP 195
+ P L L + + D GEY C G + L V + +
Sbjct: 66 APGPGLGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEVLESSVAEHGA 116
Score = 52.2 bits (125), Expect = 3e-08
Identities = 20/105 (19%), Positives = 35/105 (33%), Gaps = 19/105 (18%)
Query: 300 PANQTLPLRSEARLRCQVRGEGS----VQWWRGEREVGS-------------GPRVNVTG 342
N + L+C + + V W + ++ + RV
Sbjct: 10 TGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPGP 69
Query: 343 DGSLVLTDVTKEDSGEYTCVVKS-PHGSASWSASLR-FESPTNPN 385
L L +T D+GEY C+ + P G+ + L ES +
Sbjct: 70 GLGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEVLESSVAEH 114
Score = 47.2 bits (112), Expect = 1e-06
Identities = 21/111 (18%), Positives = 34/111 (30%), Gaps = 14/111 (12%)
Query: 10 VQPKSQRVAAGDTALLECGPPRGHPEPTLV-WKKNGHPIDFENSK-----------RLRL 57
+ G + +L+C + T V W++ + N+ R+
Sbjct: 8 ETTGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAP 67
Query: 58 VDGTNLAIQDSRKTDDGRYQCVVKNV-AGTRESTDAVLRVLVKPYIIRGPK 107
G L +Q D G Y C+ GT L VL G +
Sbjct: 68 GPGLGLTLQSLTVNDTGEYFCIYHTYPDGTYTGR-IFLEVLESSVAEHGAR 117
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast
MYBP-C, C-protein, skeletal muscle fast isoform,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 56.0 bits (134), Expect = 1e-09
Identities = 18/105 (17%), Positives = 30/105 (28%), Gaps = 16/105 (15%)
Query: 100 PYIIRGPKDTTVSASSIIVFECSVGGDAVL---TVHW-------------KRLGSAMPED 143
++ P +V V V G + T+ W R +
Sbjct: 13 GVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHN 72
Query: 144 RMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMA 188
S + + L + V L D G Y E + S + V+
Sbjct: 73 SASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDVEAP 117
Score = 52.5 bits (125), Expect = 2e-08
Identities = 24/113 (21%), Positives = 44/113 (38%), Gaps = 17/113 (15%)
Query: 286 SGPDPNPPPVILFGPANQTLPLRSEARLRCQVRGEG-----SVQWWRG---EREVGSGPR 337
S P V L P + ++ +A + +V G+ +++W++G E SG R
Sbjct: 5 SSGAEEPTGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGAR 64
Query: 338 --VNVTGDGS-------LVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESP 381
+ + + L + V D G Y VK+ S ++ E+P
Sbjct: 65 FSFKESHNSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDVEAP 117
Score = 42.9 bits (100), Expect = 5e-05
Identities = 22/96 (22%), Positives = 29/96 (30%), Gaps = 14/96 (14%)
Query: 8 FRVQPKSQRVAAGDTALLEC---GPPRGHPEPTLVW---------KKNGHPIDFENSK-R 54
F +P S V G A++ G PT+ W K+G F+ S
Sbjct: 15 FLKKPDSVSVETGKDAVVVAKVNGKELPDK-PTIKWFKGKWLELGSKSGARFSFKESHNS 73
Query: 55 LRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTREST 90
V L I D G Y+ VK
Sbjct: 74 ASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCG 109
Score = 33.6 bits (76), Expect = 0.078
Identities = 18/105 (17%), Positives = 32/105 (30%), Gaps = 13/105 (12%)
Query: 193 ERPSDLRLEVGRDAVFLCGIEGSP---PPSTFWMLEGNRSL-IYPGDRVDNIQAEITSDG 248
++P + +E G+DAV + + G P+ W L G R + + +
Sbjct: 17 KKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGAR---FSFKESHNS 73
Query: 249 MNL-----LKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGP 288
+ L I V D ++ V P
Sbjct: 74 ASNVYTVELHIGKVVLGDRG-YYRLEVKAKDTCDSCGFNIDVEAP 117
>3qht_C Monobody YSMB-1; fibronectin type III, yeast small ubiquitin-like
modifier, S NOVO protein; 2.40A {Artificial gene}
Length = 97
Score = 55.1 bits (133), Expect = 2e-09
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 6/89 (6%)
Query: 641 PSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVG-GGNNSALINMTVSASTP 699
S VP + V TS+L+ W + Y+I G G NS + TV S+
Sbjct: 4 VSSVPTKLEVVAATPTSLLISWDASS-----SSVSYYRITYGETGGNSPVQEFTVPGSSS 58
Query: 700 TLLLTNLSAGIRYSVSLAATNRAGTGPYS 728
T ++ LS G+ Y++++ A YS
Sbjct: 59 TATISGLSPGVDYTITVYAYYSYYDLYYS 87
Score = 47.4 bits (113), Expect = 8e-07
Identities = 23/100 (23%), Positives = 41/100 (41%), Gaps = 14/100 (14%)
Query: 395 STYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATAT 454
S+ PTK +V T L ++W ++ SS+ Y++ Y +G +
Sbjct: 2 SSVSSVPTKLEVVAATPTSLLISWDASS----SSVSYYRIT-Y-------GETGGNSPVQ 49
Query: 455 WVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPS 494
V + + T++ L+ G+ YT V A S+ S
Sbjct: 50 EFTVPGSSST--ATISGLSPGVDYTITVYAYYSYYDLYYS 87
Score = 33.1 bits (76), Expect = 0.085
Identities = 17/79 (21%), Positives = 32/79 (40%), Gaps = 3/79 (3%)
Query: 551 EVKPMTSTSVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHY 610
EV T TS+ ++W+ ++ + I + V TV G +S ++GL+
Sbjct: 12 EVVAATPTSLLISWDA-SSSSVSYYRITYGETGGNSPVQEFTV--PGSSSTATISGLSPG 68
Query: 611 SRYEFFLVPFFGSVDGKPS 629
Y + ++ D S
Sbjct: 69 VDYTITVYAYYSYYDLYYS 87
>1v5j_A KIAA1355 protein, RSGI RUH-008; FN3 domain, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, cell adhesion; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 108
Score = 54.9 bits (132), Expect = 2e-09
Identities = 22/110 (20%), Positives = 34/110 (30%), Gaps = 16/110 (14%)
Query: 391 APEPSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDT 450
S+ PP + +T G+ L W L GY +E
Sbjct: 1 GSSGSSGLSPPR-GLVAVRTPRGVLLHWDPPEL-VPKRLDGYVLEG------------RQ 46
Query: 451 ATATWVRVATNVP--SPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSD 498
+ W + V L V L + Y F + A +S PS ++
Sbjct: 47 GSQGWEVLDPAVAGTETELLVPGLIKDVLYEFRLVAFAGSFVSDPSNTAN 96
Score = 47.2 bits (112), Expect = 1e-06
Identities = 23/106 (21%), Positives = 36/106 (33%), Gaps = 6/106 (5%)
Query: 639 CEPSGVPQLTDPVLLNAT--SVLLKWKPPPVGTHNGVIRTYQI-IVGGGNNSALINMTVS 695
S ++ T VLL W PP + Y + G +++ V+
Sbjct: 2 SSGSSGLSPPRGLVAVRTPRGVLLHWDPPE--LVPKRLDGYVLEGRQGSQGWEVLDPAVA 59
Query: 696 ASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGPEP 741
+ LL+ L + Y L A + S A +S TSG
Sbjct: 60 GTETELLVPGLIKDVLYEFRLVAFAGSFVSDPSNTANVS-TSGLSG 104
Score = 31.8 bits (72), Expect = 0.24
Identities = 27/88 (30%), Positives = 33/88 (37%), Gaps = 4/88 (4%)
Query: 556 TSTSVKLTWE--ILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRY 613
T V L W+ L ++G Y+ +L AG + LV GL Y
Sbjct: 19 TPRGVLLHWDPPELVPKRLDG-YVLEGRQGSQGWE-VLDPAVAGTETELLVPGLIKDVLY 76
Query: 614 EFFLVPFFGSVDGKPSNLRAVRTLECEP 641
EF LV F GS PSN V T
Sbjct: 77 EFRLVAFAGSFVSDPSNTANVSTSGLSG 104
>3b83_A Ten-D3; beta sheet, computational redesigned protein, alternative
splicing, cell adhesion, coiled coil, EGF-like domain,
extracellular matrix; 2.40A {Homo sapiens}
Length = 100
Score = 54.3 bits (131), Expect = 3e-09
Identities = 22/95 (23%), Positives = 32/95 (33%), Gaps = 14/95 (14%)
Query: 400 PPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVA 459
PP + N T + W + G V D + T V +
Sbjct: 4 PPFNIKVTNITLTTAVVTWQP----PILPIEGILVTF--------GRKNDPSDETTVDLT 51
Query: 460 TNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPS 494
+++ S LT+TNL TY + A N S P
Sbjct: 52 SSITS--LTLTNLEPNTTYEIRIVARNGQQYSPPV 84
Score = 50.5 bits (121), Expect = 7e-08
Identities = 20/90 (22%), Positives = 36/90 (40%), Gaps = 9/90 (10%)
Query: 653 LNATSVLLKWKPPPVGTHNGVIRTYQIIVG-GGNNSALINMTVSASTPTLLLTNLSAGIR 711
+ T+ ++ W+PP I + G + S + +++S +L LTNL
Sbjct: 13 ITLTTAVVTWQPPI-----LPIEGILVTFGRKNDPSDETTVDLTSSITSLTLTNLEPNTT 67
Query: 712 YSVSLAATNRAGTGPYSRPALLSLTSGPEP 741
Y + + A N P P + T+G
Sbjct: 68 YEIRIVARNGQQYSP---PVSTTFTTGSLE 94
Score = 32.4 bits (74), Expect = 0.15
Identities = 16/79 (20%), Positives = 31/79 (39%), Gaps = 3/79 (3%)
Query: 551 EVKPMTSTSVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHY 610
+V +T T+ +TW+ IEG+ + + P+ + + + +T L
Sbjct: 9 KVTNITLTTAVVTWQPPILP-IEGILVTFGRKNDPSDETTVDL--TSSITSLTLTNLEPN 65
Query: 611 SRYEFFLVPFFGSVDGKPS 629
+ YE +V G P
Sbjct: 66 TTYEIRIVARNGQQYSPPV 84
>2h41_A Fibronectin; beta sandwich, cell adhesion, structural protein; NMR
{Homo sapiens} PDB: 2h45_A
Length = 95
Score = 54.1 bits (130), Expect = 4e-09
Identities = 16/101 (15%), Positives = 36/101 (35%), Gaps = 14/101 (13%)
Query: 394 PSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATA 453
P T ++ TA+ ++W S ++ G++VE S +
Sbjct: 2 PLGSHLVATSESVTEITASSFVVSWVS----ASDTVSGFRVEY--------ELSEEGDEP 49
Query: 454 TWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPS 494
++ + + S + + +L G Y V ++ G +
Sbjct: 50 QYLDLPSTATS--VNIPDLLPGRKYIVNVYQISEDGEQSLI 88
Score = 44.0 bits (104), Expect = 1e-05
Identities = 11/74 (14%), Positives = 28/74 (37%), Gaps = 4/74 (5%)
Query: 655 ATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRYSV 714
A+S ++ W + Y++ G L + ++ ++ + +L G +Y V
Sbjct: 19 ASSFVVSWVSASDTVSGFRV-EYELSEEGDEPQYL---DLPSTATSVNIPDLLPGRKYIV 74
Query: 715 SLAATNRAGTGPYS 728
++ + G
Sbjct: 75 NVYQISEDGEQSLI 88
>1x5a_A Ephrin type-A receptor 1; tyrosine-protein kinase receptor, ESK,
fibronectin type III (FN3) domain, structural genomics,
NPPSFA; NMR {Mus musculus} SCOP: b.1.2.1
Length = 107
Score = 53.6 bits (129), Expect = 7e-09
Identities = 19/103 (18%), Positives = 29/103 (28%), Gaps = 5/103 (4%)
Query: 640 EPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTP 699
S V + L W G + +Y++ V + P
Sbjct: 8 AESLSGLSLKLVKKEPRQLELTWAGSRPRNPGGNL-SYELHVLNQDEE----WHQMVLEP 62
Query: 700 TLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGPEPR 742
+LLT L Y V + G GP+S + P
Sbjct: 63 RVLLTKLQPDTTYIVRVRTLTPLGPGPFSPDHEFRTSPPSGPS 105
Score = 45.6 bits (108), Expect = 4e-06
Identities = 20/103 (19%), Positives = 33/103 (32%), Gaps = 17/103 (16%)
Query: 395 STYPGPPTKPTL--VNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTAT 452
S+ + +L V + L L W+ + L Y++ + ++
Sbjct: 5 SSGAESLSGLSLKLVKKEPRQLELTWAGSRPRNPGGNLSYELHVLNQDEEWHQ------- 57
Query: 453 ATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSP 495
V P + +T L TY VR L G SP
Sbjct: 58 --------MVLEPRVLLTKLQPDTTYIVRVRTLTPLGPGPFSP 92
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor,
immune system, IG domain, cytotoxicity, C2-type IG-like
domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 188
Score = 55.6 bits (134), Expect = 7e-09
Identities = 26/165 (15%), Positives = 44/165 (26%), Gaps = 7/165 (4%)
Query: 9 RVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDS 68
+P V + C G E G + K ++ I D
Sbjct: 8 WAEP-HFMVPKEKQVTICCQGNYGAVEYQ--LHFEGSLFAVDRPKPPERINKVKFYIPDM 64
Query: 69 RKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPY---IIRGPKDTTVSASSIIVFECSVGG 125
G+Y C+ + E ++ + V+ + Y + V + + F C
Sbjct: 65 NSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTFYCR-LD 123
Query: 126 DAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEA 170
A + G + R L V G Y C
Sbjct: 124 TATSMFLLLKEGRSSHVQRGYGKVQAEFPLGPVTTAHRGTYRCFG 168
Score = 44.4 bits (105), Expect = 4e-05
Identities = 15/88 (17%), Positives = 30/88 (34%), Gaps = 4/88 (4%)
Query: 292 PPPVILFGPANQTLPLRSEARLRCQVRGEGSVQWWRGEREVGSGPRVNVTGDGS---LVL 348
P P I P + +P + + CQ E + + R + +
Sbjct: 3 PKPFIWAEP-HFMVPKEKQVTICCQGNYGAVEYQLHFEGSLFAVDRPKPPERINKVKFYI 61
Query: 349 TDVTKEDSGEYTCVVKSPHGSASWSASL 376
D+ +G+Y+C+ + + S L
Sbjct: 62 PDMNSRMAGQYSCIYRVGELWSEPSNLL 89
Score = 37.1 bits (86), Expect = 0.012
Identities = 16/94 (17%), Positives = 26/94 (27%), Gaps = 5/94 (5%)
Query: 283 LTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRGEGSVQWWRGEREVGSGPRVNVTG 342
L + + P + P + + + C++ S+ E R
Sbjct: 89 LDLVVTEMYDTPTLSVHPGPEVIS-GEKVTFYCRLDTATSMFLLLKEGRSSHVQRGYGKV 147
Query: 343 DGSLVLTDVTKEDSGEYTCV-VKSPHGSASWSAS 375
L VT G Y C + H WS
Sbjct: 148 QAEFPLGPVTTAHRGTYRCFGSYNNHA---WSFP 178
Score = 35.9 bits (83), Expect = 0.028
Identities = 29/142 (20%), Positives = 41/142 (28%), Gaps = 14/142 (9%)
Query: 99 KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRS---LQL 155
KP+I P V + C AV GS DR + +
Sbjct: 4 KPFIWAEP-HFMVPKEKQVTICCQGNYGAV-EYQLHFEGSLFAVDRPKPPERINKVKFYI 61
Query: 156 SDVRLEDAGEYVCEAENAVGKISASATLTVQMA-----PIVRERPSDLRLEVGRDAVFLC 210
D+ AG+Y C S L + + P + P + G F C
Sbjct: 62 PDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPG-PEVISGEKVTFYC 120
Query: 211 GIEGSPPPSTF-WMLEGNRSLI 231
S F + EG S +
Sbjct: 121 --RLDTATSMFLLLKEGRSSHV 140
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural
cytotoxicity receptor, NK cell receptor, immunoglobulin
fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4
Length = 242
Score = 56.1 bits (135), Expect = 1e-08
Identities = 32/220 (14%), Positives = 55/220 (25%), Gaps = 11/220 (5%)
Query: 9 RVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDS 68
+P V + C G E G + K ++ I D
Sbjct: 11 WAEP-HFMVPKEKQVTICCQGNYGAVE--YQLHFEGSLFAVDRPKPPERINKVKFYIPDM 67
Query: 69 RKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPY---IIRGPKDTTVSASSIIVFECSVGG 125
G+Y C+ + E ++ + V+ + Y + V + + F C
Sbjct: 68 NSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTFYCR-LD 126
Query: 126 DAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISA-SATLT 184
A + G + R L V G Y C S S +
Sbjct: 127 TATSMFLLLKEGRSSHVQRGYGKVQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVK 186
Query: 185 VQMAPIVRE---RPSDLRLEVGRDAVFLCGIEGSPPPSTF 221
+ + + P D +L E
Sbjct: 187 LLVTGDIENTSLAPEDPTFPADTWGTYLLTTETGLQKDHA 226
Score = 39.9 bits (93), Expect = 0.002
Identities = 20/147 (13%), Positives = 38/147 (25%), Gaps = 8/147 (5%)
Query: 268 CLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRGEGSVQWWR 327
C+ L + + P + P + + C++ S+
Sbjct: 77 CIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPG-PEVISGEKVTFYCRLDTATSMFLLL 135
Query: 328 GEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVV-KSPHGSASWSASLRF---ESPTN 383
E R L VT G Y C + H + S ++ N
Sbjct: 136 KEGRSSHVQRGYGKVQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVTGDIEN 195
Query: 384 PNIGFFRAPEPSTYPGPPTKPTLVNQT 410
++ +P+ L +T
Sbjct: 196 TSL---APEDPTFPADTWGTYLLTTET 219
>2rb8_A Tenascin; beta sheet,loop design, alternative splicing, cell
adhesion, coiled coil, EGF-like domain, extracellular
matrix, glycoprotein; 1.45A {Homo sapiens} PDB: 2rbl_A
1ten_A
Length = 104
Score = 52.8 bits (127), Expect = 1e-08
Identities = 17/88 (19%), Positives = 32/88 (36%), Gaps = 9/88 (10%)
Query: 655 ATSVLLKWKPPPVGTHNGVIRTYQIIVG-GGNNSALINMTVSASTPTLLLTNLSAGIRYS 713
T+ L+ W PP + + +++ G + ++ + NL Y
Sbjct: 16 DTTALITWMPP-----SQPVDGFELTYGIKDVPGDRTTIDLTEDENQYSIGNLKPDTEYE 70
Query: 714 VSLAATNRAGTGPYSRPALLSLTSGPEP 741
VSL + + S PA + T+G
Sbjct: 71 VSLISRRGDMS---SNPAKETFTTGLAA 95
Score = 47.8 bits (114), Expect = 7e-07
Identities = 11/97 (11%), Positives = 28/97 (28%), Gaps = 14/97 (14%)
Query: 398 PGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVR 457
P++ + + T + W S + G+++ T +
Sbjct: 3 LDAPSQIEVKDVTDTTALITWMP----PSQPVDGFELTY--------GIKDVPGDRTTID 50
Query: 458 VATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPS 494
+ + ++ NL Y + + S P+
Sbjct: 51 LTEDENQ--YSIGNLKPDTEYEVSLISRRGDMSSNPA 85
Score = 35.1 bits (81), Expect = 0.017
Identities = 17/92 (18%), Positives = 34/92 (36%), Gaps = 4/92 (4%)
Query: 551 EVKPMTSTSVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHY 610
EVK +T T+ +TW + ++G + D P + + + + + + L
Sbjct: 10 EVKDVTDTTALITWMPPSQP-VDGFELTYGIKDVPGDRTTIDL--TEDENQYSIGNLKPD 66
Query: 611 SRYEFFLVPFFGSVDGKPSNLRAVRTLECEPS 642
+ YE L+ G + P+ T
Sbjct: 67 TEYEVSLISRRGDMSSNPAKET-FTTGLAAAL 97
>2ee3_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 108
Score = 52.4 bits (126), Expect = 2e-08
Identities = 11/88 (12%), Positives = 26/88 (29%), Gaps = 8/88 (9%)
Query: 654 NATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRYS 713
+ + + W+ P +R ++ + + +L LS+ Y+
Sbjct: 20 SHDAARVFWEGAP-----RPVRLVRVTYVSSEGGHSGQTEAPGNATSAMLGPLSSSTTYT 74
Query: 714 VSLAATNRAGTGPYSRPALLSLTSGPEP 741
V + G +T+ P
Sbjct: 75 VRVTCLYPGGGSS---TLTGRVTTKKAP 99
Score = 46.3 bits (110), Expect = 3e-06
Identities = 17/102 (16%), Positives = 29/102 (28%), Gaps = 15/102 (14%)
Query: 393 EPSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTAT 452
S+ PP + + + + W + +V Y S +
Sbjct: 3 SGSSGLAPPRHLGFSDVSHDAARVFWEG----APRPVRLVRVT-YV--------SSEGGH 49
Query: 453 ATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPS 494
+ N S + L+ TYT V L G S+
Sbjct: 50 SGQTEAPGNATS--AMLGPLSSSTTYTVRVTCLYPGGGSSTL 89
Score = 32.0 bits (73), Expect = 0.20
Identities = 10/95 (10%), Positives = 24/95 (25%), Gaps = 4/95 (4%)
Query: 551 EVKPMTSTSVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHY 610
++ + ++ WE + + G A+ ++ L+
Sbjct: 15 GFSDVSHDAARVFWEGAPRP-VRL-VRVTYVSSEGGHSGQTEA--PGNATSAMLGPLSSS 70
Query: 611 SRYEFFLVPFFGSVDGKPSNLRAVRTLECEPSGVP 645
+ Y + + R PS P
Sbjct: 71 TTYTVRVTCLYPGGGSSTLTGRVTTKKAPSPSSGP 105
>2edd_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 123
Score = 53.0 bits (127), Expect = 2e-08
Identities = 17/106 (16%), Positives = 31/106 (29%), Gaps = 2/106 (1%)
Query: 628 PSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPP--PVGTHNGVIRTYQIIVGGGN 685
S P P V L +V + W P +R Y +
Sbjct: 5 SSGFPTSVPDLSTPMLPPVGVQAVALTHDAVRVSWADNSVPKNQKTSEVRLYTVRWRTSF 64
Query: 686 NSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPA 731
+++ + ++ + T L Y S+ T + +S A
Sbjct: 65 SASAKYKSEDTTSLSYTATGLKPNTMYEFSVMVTKNRRSSTWSMTA 110
Score = 49.9 bits (119), Expect = 2e-07
Identities = 24/108 (22%), Positives = 35/108 (32%), Gaps = 14/108 (12%)
Query: 391 APEPSTYPGPPTKPTLVNQTANGLTLAW---SRNNQIGSSSLLGYQVEMYSRPLPSSSPS 447
P+ ST PP V T + + ++W S +S + Y V R S+S
Sbjct: 12 VPDLSTPMLPPVGVQAVALTHDAVRVSWADNSVPKNQKTSEVRLYTV--RWRTSFSASAK 69
Query: 448 GDTATATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSP 495
+ T + T T L Y F V + S S
Sbjct: 70 YKSEDTTSLSY---------TATGLKPNTMYEFSVMVTKNRRSSTWSM 108
Score = 37.9 bits (88), Expect = 0.003
Identities = 15/95 (15%), Positives = 30/95 (31%), Gaps = 3/95 (3%)
Query: 551 EVKPMTSTSVKLTWE---ILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGL 607
+ +T +V+++W + V +Y+ S + + + TGL
Sbjct: 26 QAVALTHDAVRVSWADNSVPKNQKTSEVRLYTVRWRTSFSASAKYKSEDTTSLSYTATGL 85
Query: 608 AHYSRYEFFLVPFFGSVDGKPSNLRAVRTLECEPS 642
+ YEF ++ S T E
Sbjct: 86 KPNTMYEFSVMVTKNRRSSTWSMTAHATTYEASGP 120
>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold,
cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A
{Homo sapiens} SCOP: b.1.1.3 b.1.1.4
Length = 192
Score = 54.4 bits (130), Expect = 2e-08
Identities = 36/197 (18%), Positives = 52/197 (26%), Gaps = 27/197 (13%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPT-LVWKKNGHPIDFENSKRLRLVDGTNLAI 65
E V+PK V + + C PE L N +D + + LV
Sbjct: 4 EVHVRPKKLAVEPKGSLEVNCSTTCNQPEVGGLETSLNKILLDEQAQWKHYLV------- 56
Query: 66 QDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGG 125
S + D QC V +I + T V+ EC V
Sbjct: 57 --SNISHDTVLQCHFTCSGKQESMNSNVSVYQPPRQVILTLQPTLVAVGKSFTIECRVPT 114
Query: 126 D---AVLTVHWKR----LGSAMPEDRMSVLPSRSLQLSD-VRLEDAG-EYVCEAENAVG- 175
LT+ R L + + ED + C A +
Sbjct: 115 VEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNFSCLAVLDLMS 174
Query: 176 -------KISASATLTV 185
K SA L +
Sbjct: 175 RGGNIFHKHSAPKMLEI 191
Score = 49.8 bits (118), Expect = 7e-07
Identities = 25/201 (12%), Positives = 58/201 (28%), Gaps = 29/201 (14%)
Query: 191 VRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMN 250
V RP L +E C + P N+ L+ +
Sbjct: 5 VHVRPKKLAVEPKGSLEVNCSTTCNQPEVGGLETSLNKILLDEQAQ-------------- 50
Query: 251 LLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSE 310
K VS + ++ C + + ++++V P P ++ + +
Sbjct: 51 -WKHYLVSNISHDTVLQCHFTCSGKQESMNSNVSVYQP----PRQVILTLQPTLVAVGKS 105
Query: 311 ARLRCQVRGEG-----SVQWWRGEREVGSGPRVNVTGDG----SLVLTDVTKEDSG-EYT 360
+ C+V ++ +RG + + + +ED ++
Sbjct: 106 FTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNFS 165
Query: 361 CVVKSPHGSASWSASLRFESP 381
C+ S + + +P
Sbjct: 166 CLAVLDLMSRGGNIFHKHSAP 186
Score = 44.7 bits (105), Expect = 4e-05
Identities = 20/128 (15%), Positives = 42/128 (32%), Gaps = 7/128 (5%)
Query: 106 PKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGE 165
PK V + CS + + + + D + + +S++
Sbjct: 9 PKKLAVEPKGSLEVNCSTTCNQPEVGGLETSLNKILLDEQAQW--KHYLVSNI--SHDTV 64
Query: 166 YVCEAENAVGKISASATLTVQMAP-IVRERPSDLRLEVGRDAVFLCGIEGSPPPS--TFW 222
C + + S ++ ++V P V + VG+ C + P T +
Sbjct: 65 LQCHFTCSGKQESMNSNVSVYQPPRQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLF 124
Query: 223 MLEGNRSL 230
+ GN +L
Sbjct: 125 LFRGNETL 132
Score = 31.7 bits (71), Expect = 0.81
Identities = 12/82 (14%), Positives = 24/82 (29%), Gaps = 5/82 (6%)
Query: 6 EEFRVQPKSQRVAAGDTALLECGPPRGHPEP--TLVWKKNGHPIDFENSKRLRLVDGT-- 61
+ + + VA G + +EC P P TL + + +E +
Sbjct: 89 RQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEAT 148
Query: 62 -NLAIQDSRKTDDGRYQCVVKN 82
R+ + C+
Sbjct: 149 ATFNSTADREDGHRNFSCLAVL 170
>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain,
integrin, allosteric mobility, cell adhesi immune
system; HET: NAG; 2.10A {Homo sapiens}
Length = 196
Score = 54.7 bits (131), Expect = 2e-08
Identities = 35/191 (18%), Positives = 52/191 (27%), Gaps = 31/191 (16%)
Query: 191 VRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMN 250
+P +E G C P R+ T G+
Sbjct: 5 ADLQPRVAFVERGGSLWLNCSTNCPRPERGGLETSLRRNG--------------TQRGLR 50
Query: 251 LLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSE 310
L Q V +C A + AR + P V L P P+
Sbjct: 51 WLARQLVDIREPETQPVCFFRCARRTLQARGLIRTFQR---PDRVEL-MPLPPWQPVGEN 106
Query: 311 ARLRCQVRGEG-----SVQWWRGEREVGSGPRVNVTGDG----SLVLTDVTKEDSG-EYT 360
L C+V G G ++ RG +E+ +ED G ++
Sbjct: 107 FTLSCRVPGAGPRASLTLTLLRGAQELIRRSFAGEPPRARGAVLTATVLARREDHGANFS 166
Query: 361 CVVK---SPHG 368
C + PHG
Sbjct: 167 CRAELDLRPHG 177
Score = 53.9 bits (129), Expect = 3e-08
Identities = 27/136 (19%), Positives = 43/136 (31%), Gaps = 7/136 (5%)
Query: 99 KPYIIR-GPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSD 157
+P+ P+ V + CS + L + QL D
Sbjct: 1 EPFWADLQPRVAFVERGGSLWLNCSTNCPRPERGGLETSLRRNG--TQRGLRWLARQLVD 58
Query: 158 VRLEDAGEYVCEAENAVGKISASATLTVQMAP-IVRERPSDLRLEVGRDAVFLCGIEGSP 216
+R E + VC A + A + P V P VG + C + G+
Sbjct: 59 IR-EPETQPVCFFRCARRTLQARGLIRTFQRPDRVELMPLPPWQPVGENFTLSCRVPGAG 117
Query: 217 PPS--TFWMLEGNRSL 230
P + T +L G + L
Sbjct: 118 PRASLTLTLLRGAQEL 133
Score = 53.2 bits (127), Expect = 6e-08
Identities = 36/199 (18%), Positives = 54/199 (27%), Gaps = 30/199 (15%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEP-TLVWKKNGHPIDFE-NSKRLRLVDGTNLA 64
+QP+ V G + L C PE L + +LVD
Sbjct: 4 WADLQPRVAFVERGGSLWLNCSTNCPRPERGGLETSLRRNGTQRGLRWLARQLVDIR--- 60
Query: 65 IQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIR-GPKDTTVSASSIIVFECSV 123
+ + C + T ++ ++R +P + P C V
Sbjct: 61 ------EPETQPVCFFRCARRTLQAR-GLIRTFQRPDRVELMPLPPWQPVGENFTLSCRV 113
Query: 124 GGD---AVLTVHWKR----LGSAMPEDRMSVLPSRSLQLS-DVRLEDAG-EYVCEAENAV 174
G A LT+ R L L + R ED G + C AE +
Sbjct: 114 PGAGPRASLTLTLLRGAQELIRRSFAGEPPRARGAVLTATVLARREDHGANFSCRAELDL 173
Query: 175 G--------KISASATLTV 185
SA L
Sbjct: 174 RPHGLGLFENSSAPRELRT 192
Score = 40.1 bits (93), Expect = 0.001
Identities = 26/168 (15%), Positives = 39/168 (23%), Gaps = 26/168 (15%)
Query: 300 PANQTLPLRSEARLRCQVRGE-GSVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGE 358
P + L C E + + L D+ E +
Sbjct: 9 PRVAFVERGGSLWLNCSTNCPRPERGGL--ETSLRRNGTQRGLRWLARQLVDIR-EPETQ 65
Query: 359 YTCVVKSPHGSASWSASLR-FESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANG---- 413
C + + +R F+ P + P G TL +
Sbjct: 66 PVCFFRCARRTLQARGLIRTFQRPDRVEL---MPLPPWQPVGENF--TLSCRVPGAGPRA 120
Query: 414 -LTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVAT 460
LTL R Q E+ R P A T +A
Sbjct: 121 SLTLTLLRGAQ-----------ELIRRSFAGEPPRARGAVLTATVLAR 157
Score = 33.1 bits (75), Expect = 0.25
Identities = 14/82 (17%), Positives = 24/82 (29%), Gaps = 5/82 (6%)
Query: 6 EEFRVQPKSQRVAAGDTALLECGPPRGHPEP--TLVWKKNGHPIDFENSKRL--RLVDGT 61
+ + P G+ L C P P TL + + + R
Sbjct: 90 DRVELMPLPPWQPVGENFTLSCRVPGAGPRASLTLTLLRGAQELIRRSFAGEPPRARGAV 149
Query: 62 NLAIQDSRKTDDGR-YQCVVKN 82
A +R+ D G + C +
Sbjct: 150 LTATVLARREDHGANFSCRAEL 171
>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding
homology region (CHR), cell MEMB disease mutation,
glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo
sapiens}
Length = 483
Score = 56.8 bits (136), Expect = 2e-08
Identities = 51/444 (11%), Positives = 105/444 (23%), Gaps = 76/444 (17%)
Query: 349 TDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTL-V 407
+ G+Y + S H S ++ I P P L
Sbjct: 47 IKIPALSHGDYEITINSLHDFGSSTSKFTLNEQNVSLI-----------PDTPEILQLSA 95
Query: 408 NQTANGLTLAWS-RNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPI 466
+ + + L L W+ R + S + +++++ S T + +
Sbjct: 96 DFSTSTLYLKWNDRGSVFPHRSNVIWEIKV--LRKESMELVKLVTHQTTLNGKDTLHHWS 153
Query: 467 LTVTNLTVGLTYTFLVRAL-NSHGLSAPSPLS---------------------DEIVLRG 504
+ +R ++ S S D+++L G
Sbjct: 154 WASDMPLECAIHFVEIRCYIDNLHFSGLEEWSDWSPVKQISWIPDSQTKVFPQDKVILVG 213
Query: 505 -------TFSEGIFSEGGKGIFSENFPDEGRGESLRRAR-----------QHLQEGGGSL 546
E + S +G +++ E
Sbjct: 214 SDITFCCVSQEKVLSALIGHTNCPLIHLDGENVAIKIRNISVSASSGTNVVFTTEDNIFG 273
Query: 547 IELTEVKP-----------MTSTSVKLTWEILNTDYIEGV----YIYSRGLDPPASVAML 591
+ P + +W + G Y
Sbjct: 274 TVIFAGYPPDTPQQLNCETHDLKEIICSWNPGRVTALVGPRATSYTLVESFSGKYVRLKR 333
Query: 592 TVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVRTLECEPSGVPQLTDPV 651
E+ L L + Y F L + G+ + V E P
Sbjct: 334 AEAPTNESYQLLFQMLPNQEIYNFTLNAH--NPLGRSQSTILVNITEKVYPHTPTSFKVK 391
Query: 652 LLNATSVLLKWKPPPVGTHNGVIRTYQI-IVGGGNNSALINMTVSASTPT-LLLTNLSAG 709
+N+T+V L W P + +I + + ++ + L L+
Sbjct: 392 DINSTAVKLSWHLPGNFAKINFLCEIEIKKSNSVQEQRNVTIQGVENSSYLVALDKLNPY 451
Query: 710 IRYSVSL--AATNRAGTGPYSRPA 731
Y+ + + +S
Sbjct: 452 TLYTFRIRCSTETFWKWSKWSNKK 475
Score = 54.8 bits (131), Expect = 9e-08
Identities = 38/338 (11%), Positives = 84/338 (24%), Gaps = 53/338 (15%)
Query: 175 GKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPG 234
S ++ + P D + VG D F C + + P
Sbjct: 185 SDWSPVKQISWIPDSQTKVFPQDKVILVGSDITFCCVSQEKVLSALIGHTN------CPL 238
Query: 235 DRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASL-----TVSGPD 289
+D I ++ VS ++ ++ N G+ + ++
Sbjct: 239 IHLDGENVAIKIRNIS------VSASSGTNVVFTTEDNIFGTVIFAGYPPDTPQQLNCET 292
Query: 290 PNPPPVILF----GPANQTLPLRSEARLRCQVRGEGSVQWWRGEREVGSGPRVNVTGDGS 345
+ +I P + L G+
Sbjct: 293 HDLKEIICSWNPGRVTALVGPRATSYTLVESFSGKYVRLKR---------AEAPTNESYQ 343
Query: 346 LVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPT 405
L+ + ++ +T +P G + + + YP PT
Sbjct: 344 LLFQMLPNQEIYNFTLNAHNPLGRSQSTILVN--------------ITEKVYPHTPTSFK 389
Query: 406 LVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSP 465
+ + + + L+W + ++E+ + S
Sbjct: 390 VKDINSTAVKLSWH-LPGNFAKINFLCEIEIKKS-------NSVQEQRNVTIQGVENSSY 441
Query: 466 ILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLR 503
++ + L YTF +R S S++
Sbjct: 442 LVALDKLNPYTLYTFRIRCSTETF-WKWSKWSNKKQHL 478
Score = 46.0 bits (108), Expect = 5e-05
Identities = 66/498 (13%), Positives = 130/498 (26%), Gaps = 98/498 (19%)
Query: 165 EYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWML 224
E + + G ++ TL Q ++ + P L+L L ++ + S F
Sbjct: 58 EITINSLHDFGSSTSKFTLNEQNVSLIPDTPEILQLSADFSTSTLY-LKWNDRGSVFP-- 114
Query: 225 EGNRSLIYP--------GDRVDNIQAEITSDGMNLLKIQNVSR------TAAPLIILCLG 270
++I+ + V + + T +G + L + + + I C
Sbjct: 115 -HRSNVIWEIKVLRKESMELVKLVTHQTTLNGKDTLHHWSWASDMPLECAIHFVEIRCYI 173
Query: 271 VNAAGSDLARAS--LTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRGEGSVQWWRG 328
N S L S V P P ++ + + S+ C + V
Sbjct: 174 DNLHFSGLEEWSDWSPVKQISWIPDSQTKVFPQDKVILVGSDITFCCVSQE--KVLSALI 231
Query: 329 EREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGF 388
++ + ++ + +++ S V + + P
Sbjct: 232 GHTNCPLIHLDGE-NVAIKIRNIS--VSASSGTNVVFTTEDNIFGTVIFAGYP------- 281
Query: 389 FRAPEPSTYPGPPTKPTLVNQTANGLTLAWS--RNNQIGSSSLLGYQVEMYSRPLPSSSP 446
P P + + +W+ R + Y + S
Sbjct: 282 ---------PDTPQQLNCETHDLKEIICSWNPGRVTALVGPRATSYTLV--------ESF 324
Query: 447 SGDTATATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTF 506
SG TN L L Y F + A N
Sbjct: 325 SGKYVRLKRAEAPTNESY-QLLFQMLPNQEIYNFTLNAHNPL------------------ 365
Query: 507 SEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPMTSTSVKLTWE- 565
G+ + ++ +VK + ST+VKL+W
Sbjct: 366 --------GRSQSTILV-------------NITEKVYPHTPTSFKVKDINSTAVKLSWHL 404
Query: 566 ---ILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFL--VPF 620
+++ + I + + + L Y+ Y F +
Sbjct: 405 PGNFAKINFLCEIEIKKSNSVQEQRNVTIQGVENSSYL-VALDKLNPYTLYTFRIRCSTE 463
Query: 621 FGSVDGKPSNLRAVRTLE 638
K SN + T E
Sbjct: 464 TFWKWSKWSNKKQHLTTE 481
Score = 39.1 bits (90), Expect = 0.006
Identities = 16/145 (11%), Positives = 38/145 (26%), Gaps = 8/145 (5%)
Query: 556 TSTSVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEF 615
+ +W+ + Y + E + + L+H YE
Sbjct: 8 NLQVWQCSWKAPSGTGRGTDYEVC-------IEQRSRSCYQLEKTSIKIPALSHGD-YEI 59
Query: 616 FLVPFFGSVDGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIR 675
+ + + P L + +++ LKW +
Sbjct: 60 TINSLHDFGSSTSKFTLNEQNVSLIPDTPEILQLSADFSTSTLYLKWNDRGSVFPHRSNV 119
Query: 676 TYQIIVGGGNNSALINMTVSASTPT 700
++I V + L+ + +T
Sbjct: 120 IWEIKVLRKESMELVKLVTHQTTLN 144
Score = 36.7 bits (84), Expect = 0.038
Identities = 42/314 (13%), Positives = 84/314 (26%), Gaps = 39/314 (12%)
Query: 37 TLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRE----STDA 92
LV +++ ++ + + R + +G E S
Sbjct: 132 ELVKLVTHQTTLNGKDTLHHWSWASDMPLECAIHFVEIRCYIDNLHFSGLEEWSDWSPVK 191
Query: 93 VLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRS 152
+ + P+D + S I F C + + + L +
Sbjct: 192 QISWIPDSQTKVFPQDKVILVGSDITFCCVSQEKVLSALIGHTNCP------LIHLDGEN 245
Query: 153 LQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGI 212
+ + + + + P + P L E +C
Sbjct: 246 VAIKIRNISVSASSGTNVVFTTEDNIFGTVIFAGYPP---DTPQQLNCETHDLKEIIC-- 300
Query: 213 EGSPPPSTFWMLEGNRSLIY------PGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLII 266
+P T L G R+ Y G V +AE ++ L Q +
Sbjct: 301 SWNPGRVT--ALVGPRATSYTLVESFSGKYVRLKRAEAPTNESYQLLFQMLPNQ-EIYNF 357
Query: 267 LCLGVNAAGSDLARASLTVSGPD---PNPPPVILFGPANQTL--------PLRSEARLRC 315
N G +++++ V+ + P+ P N T ++ C
Sbjct: 358 TLNAHNPLGR--SQSTILVNITEKVYPHTPTSFKVKDINSTAVKLSWHLPGNFAKINFLC 415
Query: 316 QVR--GEGSVQWWR 327
++ SVQ R
Sbjct: 416 EIEIKKSNSVQEQR 429
>2ocf_D Fibronectin; estrogen receptor, LBD, monobody, estradiol,
hormone-growth complex; HET: CME EST; 2.95A {Homo
sapiens}
Length = 121
Score = 52.2 bits (125), Expect = 2e-08
Identities = 21/115 (18%), Positives = 39/115 (33%), Gaps = 16/115 (13%)
Query: 391 APEPSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDT 450
+ PTK +V T L ++W + ++ Y++ Y +G
Sbjct: 22 LYFQGSVSDVPTKLEVVAATPTSLLISWDA----PAVTVRYYRIT-YG-------ETGGN 69
Query: 451 ATATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGT 505
+ V + + T++ L G+ YT V A+ L S I +
Sbjct: 70 SPVQEFTVPGSKST--ATISGLKPGVDYTITVYAVTGLRLMLAG--SKPISINYR 120
Score = 49.1 bits (117), Expect = 3e-07
Identities = 26/103 (25%), Positives = 43/103 (41%), Gaps = 7/103 (6%)
Query: 636 TLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGG-GNNSALINMTV 694
+ S VP + V TS+L+ W P +R Y+I G G NS + TV
Sbjct: 23 YFQGSVSDVPTKLEVVAATPTSLLISWDAPA-----VTVRYYRITYGETGGNSPVQEFTV 77
Query: 695 SASTPTLLLTNLSAGIRYSVSLAATNRAGTG-PYSRPALLSLT 736
S T ++ L G+ Y++++ A S+P ++
Sbjct: 78 PGSKSTATISGLKPGVDYTITVYAVTGLRLMLAGSKPISINYR 120
Score = 32.2 bits (73), Expect = 0.25
Identities = 16/79 (20%), Positives = 25/79 (31%), Gaps = 3/79 (3%)
Query: 551 EVKPMTSTSVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHY 610
EV T TS+ ++W+ + I + V TV G S ++GL
Sbjct: 36 EVVAATPTSLLISWDAPAVT-VRYYRITYGETGGNSPVQEFTV--PGSKSTATISGLKPG 92
Query: 611 SRYEFFLVPFFGSVDGKPS 629
Y + G
Sbjct: 93 VDYTITVYAVTGLRLMLAG 111
>3se4_A Interferon alpha/beta receptor 1; type I interferon signaling
complex, extracellular space, IM system receptor; HET:
NAG; 3.50A {Homo sapiens} PDB: 3se3_A*
Length = 414
Score = 56.2 bits (134), Expect = 3e-08
Identities = 45/423 (10%), Positives = 92/423 (21%), Gaps = 74/423 (17%)
Query: 322 SVQW-WRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKS-PHGSASWSASLRFE 379
S + G + + E +++ ++SW F
Sbjct: 40 SFDYQKTGMDNWIKLSGCQNITSTKCNFSSLKLNVYEEIKLRIRAEKENTSSWYEVDSFT 99
Query: 380 SPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSR 439
P GPP + + + S + L YS
Sbjct: 100 ------------PFRKAQIGPPEVH--LEAEDKAIVIHISPGTKDSVMWALDGLSFTYSL 145
Query: 440 PLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDE 499
+ +S + V + L+ TY V+A S
Sbjct: 146 VIWKNS--------SGVEERIENIYSRHKIYKLSPETTYCLKVKAALLTS-WKIGVYSPV 196
Query: 500 IVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPMTSTS 559
++ T + + +N +
Sbjct: 197 HCIKTTVENELPPPENIEVSVQNQ-----------------------------------N 221
Query: 560 VKLTWE------ILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRY 613
L W+ ++ + G + + + Y
Sbjct: 222 YVLKWDYTYANMTFQVQWLHAFLKRNPGNHLYKWKQIPDCENVKTTQCVFPQNVFQKGIY 281
Query: 614 EFFLVPFFGSVDGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGV 673
+ G+ S T P + + S + P + V
Sbjct: 282 LLRVQASDGNNTSFWSEEIKFDTEIQAFLLPPVFN--IRSLSDSFHIYIGAPKQSGNTPV 339
Query: 674 IRTYQII--VGGGNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAG----TGPY 727
I+ Y +I + N++ + + + NL Y V A + +
Sbjct: 340 IQDYPLIYEIIFWENTSNAERKIIEKKTDVTVPNLKPLTVYCVKARAHTMDEKLNKSSVF 399
Query: 728 SRP 730
S
Sbjct: 400 SDA 402
Score = 41.1 bits (95), Expect = 0.001
Identities = 60/411 (14%), Positives = 118/411 (28%), Gaps = 56/411 (13%)
Query: 124 GGDAVLTVHWKRLGSA--MPEDRMSVLPSRSLQLSDVRLEDAGEYVC--EAENAVGKISA 179
G+ + +++ G + + S S ++L E AE S
Sbjct: 34 VGNVTFSFDYQKTGMDNWIKLSGCQNITSTKCNFSSLKLNVYEEIKLRIRAEKE-NTSSW 92
Query: 180 SATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDN 239
+ + P ++ LE A+ + I S W L+G ++
Sbjct: 93 YEVDSFTPFRKAQIGPPEVHLEAEDKAIVIH-ISPGTKDSVMWALDGLSFTYSLVIWKNS 151
Query: 240 IQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVS--------GPDPN 291
E + + ++ +P CL V AA + + +
Sbjct: 152 SGVEERIENIY---SRHKIYKLSPETTYCLKVKAALLTSWKIGVYSPVHCIKTTVENELP 208
Query: 292 PPPVILFGPANQTLPLR---SEARLRCQVRGEGSVQWWRGEREVGSGPRVNVTGDGSLVL 348
PP I NQ L+ + A + QV+ + + ++ +
Sbjct: 209 PPENIEVSVQNQNYVLKWDYTYANMTFQVQWLHAFLKRNPGNHLYKWKQIPDCENVKTTQ 268
Query: 349 TDVTKE--DSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTL 406
+ G Y V++ G+ S + I F E + PP
Sbjct: 269 CVFPQNVFQKGIYLLRVQASDGNN--------TSFWSEEIKFD--TEIQAFLLPPVFN-- 316
Query: 407 VNQTANGLTLAWS-----RNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATN 461
+ ++ + N + L Y++ + + + ++
Sbjct: 317 IRSLSDSFHIYIGAPKQSGNTPVIQDYPLIYEIIFW-----------ENTSNAERKIIEK 365
Query: 462 VPSPILTVTNLTVGLTYTFLVRALNSHG-LSAPSPLSDEIVLR---GTFSE 508
+TV NL Y RA L+ S SD + + G S+
Sbjct: 366 KTD--VTVPNLKPLTVYCVKARAHTMDEKLNKSSVFSDAVCEKTKPGNTSK 414
>1iar_B Protein (interleukin-4 receptor alpha chain); cytokine
receptor,interleukin-4, cytokine/receptor complex; 2.30A
{Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3bpl_B*
3bpn_B* 3bpo_B*
Length = 207
Score = 54.3 bits (130), Expect = 3e-08
Identities = 31/191 (16%), Positives = 46/191 (24%), Gaps = 31/191 (16%)
Query: 325 WWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNP 384
W+ L L E + +G A L + +
Sbjct: 20 EWKMNGPTN--------CSTELRLLYQLVFLLSEAHTCIPENNGGAGCVCHLLMDDVVSA 71
Query: 385 NIGFFR-------------APEPSTYPGPPTKPTLVNQTANGLTLAWS--RNNQIGSSSL 429
+ P P P T+ ++ L L WS +
Sbjct: 72 DNYTLDLWAGQQLLWKGSFKPSEHVKPRAPGNLTVHTNVSDTLLLTWSNPYPPDNYLYNH 131
Query: 430 LGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHG 489
L Y V D A V PS + + L G++Y VRA
Sbjct: 132 LTYAVN-IWS-------ENDPADFRIYNVTYLEPSLRIAASTLKSGISYRARVRAWAQAY 183
Query: 490 LSAPSPLSDEI 500
+ S S
Sbjct: 184 NTTWSEWSPST 194
>3mpc_A FN3-like protein; fibronectin, FN(III), unknown function; 1.60A
{Clostridium thermocellum}
Length = 103
Score = 51.6 bits (124), Expect = 3e-08
Identities = 19/100 (19%), Positives = 37/100 (37%), Gaps = 17/100 (17%)
Query: 396 TYPGPPTKPTLVNQTANG-LTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATAT 454
+ P PT + V ++ L W+ + Y V+ +
Sbjct: 3 SAPAFPTGLSAVLDSSGNTANLTWN-----AAPGANSYNVKR-----------STKSGGP 46
Query: 455 WVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPS 494
+ +ATN+ S T T + G Y ++V A+++ + S
Sbjct: 47 YTTIATNITSTNYTDTGVATGTKYYYVVSAVSNGVETLNS 86
Score = 35.1 bits (81), Expect = 0.016
Identities = 10/77 (12%), Positives = 23/77 (29%), Gaps = 6/77 (7%)
Query: 655 ATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRYSV 714
+ L W P Y + + + + ++ T ++ G +Y
Sbjct: 19 GNTANLTWNAAPGANS------YNVKRSTKSGGPYTTIATNITSTNYTDTGVATGTKYYY 72
Query: 715 SLAATNRAGTGPYSRPA 731
++A + S A
Sbjct: 73 VVSAVSNGVETLNSAEA 89
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG,
inhibitory receptor, disulfide, immune system; 1.70A
{Homo sapiens}
Length = 196
Score = 53.3 bits (128), Expect = 5e-08
Identities = 27/169 (15%), Positives = 55/169 (32%), Gaps = 14/169 (8%)
Query: 9 RVQPKSQRVAAGDTALLECGPPRGHPEPTLV-WKKNGHPIDFENSKRLRLVDGTNLAIQD 67
+P ++ G++ + C +G E K P ++ L + +I
Sbjct: 9 WAEP-GSVISWGNSVTIWC---QGTLEAREYRLDKEESPAPWDRQNPLEPKNKARFSIPS 64
Query: 68 SRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYI---IRGPKDTTVSASSIIVFECSVG 124
+ GRY+C ++ G + +D + V+ Y + V++ + C
Sbjct: 65 MTEDYAGRYRCYYRSPVGWSQPSDPLELVMTGAYSKPTLSALPSPLVTSGKSVTLLCQ-S 123
Query: 125 GDAVLTVHWKRLGSAMPEDRMSVLPSRS-----LQLSDVRLEDAGEYVC 168
+ T + +A P + +S V G Y C
Sbjct: 124 RSPMDTFLLCKERAAHPLLCLRSEHGAQQHQAEFPMSPVTSVHGGTYRC 172
Score = 43.3 bits (102), Expect = 1e-04
Identities = 28/152 (18%), Positives = 49/152 (32%), Gaps = 18/152 (11%)
Query: 292 PPPVILFGPANQTLPLRSEARLRCQVRGEGSVQWWRGEREVGSGPRVNVT-----GDGSL 346
P P + P + + + CQ G + +R ++E P
Sbjct: 4 PKPTLWAEP-GSVISWGNSVTIWCQ--GTLEAREYRLDKEESPAPWDRQNPLEPKNKARF 60
Query: 347 VLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKP-- 404
+ +T++ +G Y C +SP G + S L G + P S P P
Sbjct: 61 SIPSMTEDYAGRYRCYYRSPVGWSQPSDPLELVMT-----GAYSKPTLSALPSPLVTSGK 115
Query: 405 --TLVNQT-ANGLTLAWSRNNQIGSSSLLGYQ 433
TL+ Q+ + T + L +
Sbjct: 116 SVTLLCQSRSPMDTFLLCKERAAHPLLCLRSE 147
Score = 35.6 bits (82), Expect = 0.045
Identities = 15/98 (15%), Positives = 21/98 (21%), Gaps = 6/98 (6%)
Query: 283 LTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRGEGSVQWWRGERE-----VGSGPR 337
L + P + P + + L CQ R ER
Sbjct: 90 LELVMTGAYSKPTLSALP-SPLVTSGKSVTLLCQSRSPMDTFLLCKERAAHPLLCLRSEH 148
Query: 338 VNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSAS 375
++ VT G Y C S
Sbjct: 149 GAQQHQAEFPMSPVTSVHGGTYRCFSSHGFSHYLLSHP 186
Score = 35.2 bits (81), Expect = 0.055
Identities = 22/103 (21%), Positives = 36/103 (34%), Gaps = 11/103 (10%)
Query: 130 TVHWKRLGSAMPEDRMSVLPSRS---LQLSDVRLEDAGEYVCEAENAVGKISASATLTVQ 186
+ S P DR + L ++ + + + AG Y C + VG S L +
Sbjct: 34 EYRLDKEESPAPWDRQNPLEPKNKARFSIPSMTEDYAGRYRCYYRSPVGWSQPSDPLELV 93
Query: 187 -----MAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWML 224
P + PS + G+ LC + P TF +
Sbjct: 94 MTGAYSKPTLSALPSP-LVTSGKSVTLLC--QSRSPMDTFLLC 133
>3teu_A Fibcon; FN3 domain, fibronectin TPYE III domain, consensus design,
S de novo protein; HET: DIO; 1.00A {Synthetic}
Length = 98
Score = 50.5 bits (121), Expect = 6e-08
Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 14/96 (14%)
Query: 399 GPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRV 458
PT + N T +T++W+ S+++ GY++ PS + V
Sbjct: 3 DAPTDLQVTNVTDTSITVSWTP----PSATITGYRITYT--------PSNGPGEPKELTV 50
Query: 459 ATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPS 494
+ S +T+T LT G+ Y V AL + S P
Sbjct: 51 PPSSTS--VTITGLTPGVEYVVSVYALKDNQESPPL 84
Score = 46.3 bits (110), Expect = 2e-06
Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 9/90 (10%)
Query: 653 LNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGN-NSALINMTVSASTPTLLLTNLSAGIR 711
+ TS+ + W PP + I Y+I N +TV S+ ++ +T L+ G+
Sbjct: 13 VTDTSITVSWTPP-----SATITGYRITYTPSNGPGEPKELTVPPSSTSVTITGLTPGVE 67
Query: 712 YSVSLAATNRAGTGPYSRPALLSLTSGPEP 741
Y VS+ A P P + + T+G
Sbjct: 68 YVVSVYALKDNQESP---PLVGTQTTGGHH 94
Score = 32.4 bits (74), Expect = 0.13
Identities = 17/84 (20%), Positives = 30/84 (35%), Gaps = 3/84 (3%)
Query: 551 EVKPMTSTSVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHY 610
+V +T TS+ ++W + I G I + P LTV ++ +TGL
Sbjct: 9 QVTNVTDTSITVSWTPPSAT-ITGYRITYTPSNGPGEPKELTV--PPSSTSVTITGLTPG 65
Query: 611 SRYEFFLVPFFGSVDGKPSNLRAV 634
Y + + + P
Sbjct: 66 VEYVVSVYALKDNQESPPLVGTQT 89
>3tes_A Tencon; fibronectin type III domain, FN3, consensus design, de
novo; 2.50A {Synthetic}
Length = 98
Score = 50.5 bits (121), Expect = 6e-08
Identities = 24/101 (23%), Positives = 36/101 (35%), Gaps = 11/101 (10%)
Query: 644 VPQLTDPVLLNAT--SVLLKWKPPPVGTHNGVIRTYQIIVG-GGNNSALINMTVSASTPT 700
+P + V+ T S+ L W P + ++ I IN+TV S +
Sbjct: 2 LPAPKNLVVSEVTEDSLRLSWTAP-----DAAFDSFMIQYQESEKVGEAINLTVPGSERS 56
Query: 701 LLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGPEP 741
LT L G Y+VS+ S P T+G
Sbjct: 57 YDLTGLKPGTEYTVSIYGVKGGH---RSNPLSAEFTTGGHH 94
Score = 47.4 bits (113), Expect = 7e-07
Identities = 17/95 (17%), Positives = 31/95 (32%), Gaps = 14/95 (14%)
Query: 400 PPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVA 459
P + T + L L+W+ ++ + ++ Y S A + V
Sbjct: 4 APKNLVVSEVTEDSLRLSWTA----PDAAFDSFMIQ-YQ-------ESEKVGEAINLTVP 51
Query: 460 TNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPS 494
+ S +T L G YT + + S P
Sbjct: 52 GSERS--YDLTGLKPGTEYTVSIYGVKGGHRSNPL 84
Score = 32.8 bits (75), Expect = 0.099
Identities = 16/84 (19%), Positives = 29/84 (34%), Gaps = 3/84 (3%)
Query: 551 EVKPMTSTSVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHY 610
V +T S++L+W + + I + + LTV G + +TGL
Sbjct: 9 VVSEVTEDSLRLSWTAPD-AAFDSFMIQYQESEKVGEAINLTV--PGSERSYDLTGLKPG 65
Query: 611 SRYEFFLVPFFGSVDGKPSNLRAV 634
+ Y + G P +
Sbjct: 66 TEYTVSIYGVKGGHRSNPLSAEFT 89
>2gys_A Cytokine receptor common beta chain; dimer of interlocking chains
of fibronectin-III domains, FOU fibronectin-III domains
PER chain; HET: NAG FUC BMA NDG; 2.70A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1gh7_A*
3cxe_A* 1egj_A* 1c8p_A
Length = 419
Score = 55.0 bits (131), Expect = 7e-08
Identities = 45/387 (11%), Positives = 96/387 (24%), Gaps = 65/387 (16%)
Query: 359 YTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGLTLAW 418
CV+ + F+ P P ++ + L W
Sbjct: 70 RRCVIPCQSFVVTDVDYFSFQPDRPLGTRLTVTLTQHVQPPEPRDLQ-ISTDQDHFLLTW 128
Query: 419 SRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVGLTY 478
S S L + S + + +N L +L TY
Sbjct: 129 SVALGSPQSHWLSPGDLEFEVVYKRLQDSWED----AAILLSNTSQATLGPEHLMPSSTY 184
Query: 479 TFLVRALNSHG---LSAPSPLSDEIVLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRA 535
VR + G PS S E+ + + + F
Sbjct: 185 VARVRTRLAPGSRLSGRPSKWSPEVCWDSQPGDEAQPQNLECFFDG-------------- 230
Query: 536 RQHLQEGGGSLIELTEVKPMTSTSVKLTWEI---LNTDYIEGVYIYSRGLDPPASVAMLT 592
+ + +WE+ + + G++ A +
Sbjct: 231 ---------------------AAVLSCSWEVRKEVASSVSFGLFYKPSPDAGSAVLLREE 269
Query: 593 VLHAGEASGFLVTGLAHYSRYEFFLV--------PFFGSVDGKPSNLRAVRTLECEPSGV 644
+ + ++R+ + + SV + + + +++
Sbjct: 270 EC----SPVLREGLGSLHTRHHCQIPVPDPATHGQYIVSVQPRRAE-KHIKSSVNIQMAP 324
Query: 645 PQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQI-IVGGGNNSALINMTVSASTPTLLL 703
P L V + S L+W+ + + T++I + ++ L
Sbjct: 325 PSLQ--VTKDGDSYSLRWETMK-MRYEHIDHTFEIQYRKDTATWKDSKTETLQNAHSMAL 381
Query: 704 TNLSAGIRYSVSLAA--TNRAGTGPYS 728
L RY + + G +S
Sbjct: 382 PALEPSTRYWARVRVRTSRTGYNGIWS 408
Score = 38.4 bits (88), Expect = 0.010
Identities = 20/132 (15%), Positives = 38/132 (28%), Gaps = 11/132 (8%)
Query: 613 YEFFLVPFFGSVDGKPSNLRAVRTLECEPSGVPQLTDPVLLNAT----SVLLKWKPPPVG 668
+ F+V +P R L + Q +P L + LL W
Sbjct: 76 CQSFVVTDVDYFSFQPDRPLGTR-LTVTLTQHVQPPEPRDLQISTDQDHFLLTWSVALGS 134
Query: 669 TH----NGVIRTYQII--VGGGNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRA 722
+ ++++ + + + S TL +L Y +
Sbjct: 135 PQSHWLSPGDLEFEVVYKRLQDSWEDAAILLSNTSQATLGPEHLMPSSTYVARVRTRLAP 194
Query: 723 GTGPYSRPALLS 734
G+ RP+ S
Sbjct: 195 GSRLSGRPSKWS 206
Score = 37.7 bits (86), Expect = 0.019
Identities = 26/163 (15%), Positives = 46/163 (28%), Gaps = 21/163 (12%)
Query: 345 SLVLTDVTKEDSGEYTC--VVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPT 402
S VL + + C V P + S++ P + PP+
Sbjct: 272 SPVLREGLGSLHTRHHCQIPVPDPATHGQYIVSVQ---PRRAEKHIK--SSVNIQMAPPS 326
Query: 403 KPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNV 462
V + + +L W ++++ Y + DTAT + T
Sbjct: 327 L--QVTKDGDSYSLRWETMKMRYEHIDHTFEIQ-YRK---------DTATWKDSKTETLQ 374
Query: 463 PSPILTVTNLTVGLTYTFLVRALNSHGLSA--PSPLSDEIVLR 503
+ + + L Y VR S S S+
Sbjct: 375 NAHSMALPALEPSTRYWARVRVRTSRTGYNGIWSEWSEARSWD 417
>1wk0_A KIAA0970 protein; fibronectin type III domain, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 137
Score = 50.8 bits (121), Expect = 1e-07
Identities = 18/116 (15%), Positives = 35/116 (30%), Gaps = 12/116 (10%)
Query: 625 DGKPSNLRAVRTLECEPSGV--PQLTDPVLLNATSVLLKWKPPPV-------GTHNGVIR 675
S + E S + P +D + A +V+L W PP + +
Sbjct: 2 SSGSSGDEETKAFEALLSNIVKPVASD---IQARTVVLTWSPPSSLINGETDESSVPELY 58
Query: 676 TYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPA 731
Y++++ + L +L + Y + A + G S
Sbjct: 59 GYEVLISSTGKDGKYKSVYVGEETNITLNDLKPAMDYHAKVQAEYNSIKGTPSEAE 114
Score = 48.4 bits (115), Expect = 7e-07
Identities = 21/110 (19%), Positives = 38/110 (34%), Gaps = 10/110 (9%)
Query: 551 EVKPMTSTSVKLTWE--------ILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGF 602
+ + +V LTW + + +Y Y + ++ GE +
Sbjct: 25 VASDIQARTVVLTWSPPSSLINGETDESSVPELYGYEVLISSTGKDGKYKSVYVGEETNI 84
Query: 603 LVTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVRTLECEPS--GVPQLTDP 650
+ L Y + + S+ G PS TL CEP P+++ P
Sbjct: 85 TLNDLKPAMDYHAKVQAEYNSIKGTPSEAEIFTTLSCEPDIPNPPRISGP 134
Score = 45.7 bits (108), Expect = 6e-06
Identities = 16/98 (16%), Positives = 29/98 (29%), Gaps = 3/98 (3%)
Query: 398 PGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVR 457
KP + A + L WS + + + V S +G +
Sbjct: 18 LSNIVKPVASDIQARTVVLTWSPPSSLINGETDESSVPELYGYEVLISSTGKDG---KYK 74
Query: 458 VATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSP 495
+T+ +L + Y V+A + PS
Sbjct: 75 SVYVGEETNITLNDLKPAMDYHAKVQAEYNSIKGTPSE 112
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform
1; immunoglobulin-like fold, immune system; 1.85A {Homo
sapiens}
Length = 196
Score = 52.2 bits (125), Expect = 1e-07
Identities = 26/172 (15%), Positives = 51/172 (29%), Gaps = 15/172 (8%)
Query: 9 RVQPKSQRVAAGDTALLECGPPRGHPEPTLVW-KKNGHPIDFENSKRLRLVDGTNLAIQD 67
+P ++ G++ + C +G E K G P ++ L + +I
Sbjct: 9 WAEP-GSVISRGNSVTIRC---QGTLEAQEYRLVKEGSPEPWDTQNPLEPKNKARFSIPS 64
Query: 68 SRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPY---IIRGPKDTTVSASSIIVFECSVG 124
+ GRY+C + AG E +D + V+ Y + V++ + +C
Sbjct: 65 MTEHHAGRYRCYYYSPAGWSEPSDPLELVVTGFYNKPTLSALPSPVVTSGENVTLQCG-S 123
Query: 125 GDAVLTVHWKRLGSAMPEDRMSVLPSRS------LQLSDVRLEDAGEYVCEA 170
G + + S + V C
Sbjct: 124 RLRFDRFILTEEGDHKLSWTLDSQLTPSGQFQALFPVGPVTPSHRWMLRCYG 175
Score = 41.0 bits (96), Expect = 7e-04
Identities = 18/88 (20%), Positives = 28/88 (31%), Gaps = 11/88 (12%)
Query: 292 PPPVILFGPANQTLPLRSEARLRCQVRGEGSVQWWRGEREVGSGPRVNVTGDGS-----L 346
+ P + + +RCQ G Q +R +E P
Sbjct: 4 SKATLWAEP-GSVISRGNSVTIRCQ--GTLEAQEYRLVKEGSPEPWDTQNPLEPKNKARF 60
Query: 347 VLTDVTKEDSGEYTCVVKSPHGSASWSA 374
+ +T+ +G Y C SP G WS
Sbjct: 61 SIPSMTEHHAGRYRCYYYSPAG---WSE 85
Score = 36.8 bits (85), Expect = 0.017
Identities = 14/99 (14%), Positives = 23/99 (23%), Gaps = 7/99 (7%)
Query: 283 LTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRGEGSVQWWRGERE------VGSGP 336
L + P + P+ + L+C R E + + S
Sbjct: 90 LELVVTGFYNKPTLSALPS-PVVTSGENVTLQCGSRLRFDRFILTEEGDHKLSWTLDSQL 148
Query: 337 RVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSAS 375
+ + VT C H WS
Sbjct: 149 TPSGQFQALFPVGPVTPSHRWMLRCYGSRRHILQVWSEP 187
Score = 33.3 bits (76), Expect = 0.21
Identities = 28/151 (18%), Positives = 48/151 (31%), Gaps = 14/151 (9%)
Query: 96 VLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRS--- 152
L K + P + +S + + C +A + GS P D + L ++
Sbjct: 2 NLSKATLWAEP-GSVISRGNSVTIRCQGTLEAQ-EYRLVKEGSPEPWDTQNPLEPKNKAR 59
Query: 153 LQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMA-----PIVRERPSDLRLEVGRDAV 207
+ + AG Y C + G S L + + P + PS + G +
Sbjct: 60 FSIPSMTEHHAGRYRCYYYSPAGWSEPSDPLELVVTGFYNKPTLSALPS-PVVTSGENVT 118
Query: 208 FLCGIEGSPPPSTF-WMLEGNRSLIYPGDRV 237
C F EG+ L + D
Sbjct: 119 LQC--GSRLRFDRFILTEEGDHKLSWTLDSQ 147
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like
folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A
2dyp_D 2otp_A 3q2c_A
Length = 198
Score = 51.4 bits (123), Expect = 2e-07
Identities = 29/171 (16%), Positives = 48/171 (28%), Gaps = 16/171 (9%)
Query: 9 RVQPKSQRVAAGDTALLECGPPRGHPEPTLVW-KKNGHPIDFENSKRLRLVDGTNLAIQD 67
+P + G L C +G E + + LV I
Sbjct: 9 WAEP-GSVITQGSPVTLRC---QGGQETQEYRLYREKKTAPWITRIPQELVKKGQFPIPS 64
Query: 68 SRKTDDGRYQCVVKNV-AGTRESTDAVLRVLVKPYI---IRGPKDTTVSASSIIVFECSV 123
GRY+C + AG ES+D + V+ YI + V++ + +C
Sbjct: 65 ITWEHTGRYRCYYGSDTAGRSESSDPLELVVTGAYIKPTLSAQPSPVVNSGGNVTLQCD- 123
Query: 124 GGDAVLTVHWKRLGSAMPEDRMSVLPSRS------LQLSDVRLEDAGEYVC 168
A + G ++ P + V Y C
Sbjct: 124 SQVAFDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRC 174
Score = 40.2 bits (94), Expect = 0.001
Identities = 32/153 (20%), Positives = 44/153 (28%), Gaps = 19/153 (12%)
Query: 292 PPPVILFGPANQTLPLRSEARLRCQVRGEGSVQWWRGEREVGSGPRVNVTGDGS-----L 346
P P + P + S LRCQ G Q +R RE + P +
Sbjct: 4 PKPTLWAEPG-SVITQGSPVTLRCQ--GGQETQEYRLYREKKTAPWITRIPQELVKKGQF 60
Query: 347 VLTDVTKEDSGEYTCVVKSPHGSAS-WSASLRFESPTNPNIGFFRAPEPSTYPGPPTKP- 404
+ +T E +G Y C S S S L G + P S P P
Sbjct: 61 PIPSITWEHTGRYRCYYGSDTAGRSESSDPLELVVT-----GAYIKPTLSAQPSPVVNSG 115
Query: 405 ---TLVNQTA-NGLTLAWSRNNQIGSSSLLGYQ 433
TL + + + L Q
Sbjct: 116 GNVTLQCDSQVAFDGFILCKEGEDEHPQCLNSQ 148
Score = 34.8 bits (80), Expect = 0.072
Identities = 14/99 (14%), Positives = 25/99 (25%), Gaps = 7/99 (7%)
Query: 283 LTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRGEGSVQWWRGERE------VGSGP 336
L + P + P+ + L+C + E E + S P
Sbjct: 91 LELVVTGAYIKPTLSAQPS-PVVNSGGNVTLQCDSQVAFDGFILCKEGEDEHPQCLNSQP 149
Query: 337 RVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSAS 375
+ + V+ Y C + WS
Sbjct: 150 HARGSSRAIFSVGPVSPSRRWWYRCYAYDSNSPYEWSLP 188
Score = 32.1 bits (73), Expect = 0.51
Identities = 17/112 (15%), Positives = 28/112 (25%), Gaps = 13/112 (11%)
Query: 130 TVHWKRLGSAMPEDRMSVLPSRS---LQLSDVRLEDAGEYVCEAENAVGKISA-SATLTV 185
R P + + E G Y C + S S L +
Sbjct: 34 EYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYYGSDTAGRSESSDPLEL 93
Query: 186 QMA-----PIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTF-WMLEGNRSLI 231
+ P + +PS + + G + C + F EG
Sbjct: 94 VVTGAYIKPTLSAQPSPV-VNSGGNVTLQC--DSQVAFDGFILCKEGEDEHP 142
>2ekj_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 105
Score = 49.4 bits (118), Expect = 2e-07
Identities = 21/102 (20%), Positives = 38/102 (37%), Gaps = 14/102 (13%)
Query: 393 EPSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTAT 452
S+ PP+ L ++T + L ++W+ +L Y + Y+ P+
Sbjct: 3 SGSSGRSPPSNLALASETPDSLQVSWTP----PLGRVLHYWLT-YA-------PASGLGP 50
Query: 453 ATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPS 494
V V +T+ +L Y LV A+ + G S
Sbjct: 51 EKSVSVPGARSH--VTLPDLQAATKYRVLVSAIYAAGRSEAV 90
Score = 48.6 bits (116), Expect = 3e-07
Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 6/75 (8%)
Query: 653 LNATSVLLKWKPPPVGTHNGVIRTYQIIVG-GGNNSALINMTVSASTPTLLLTNLSAGIR 711
S+ + W PP G + Y + +++V + + L +L A +
Sbjct: 19 ETPDSLQVSWTPP-----LGRVLHYWLTYAPASGLGPEKSVSVPGARSHVTLPDLQAATK 73
Query: 712 YSVSLAATNRAGTGP 726
Y V ++A AG
Sbjct: 74 YRVLVSAIYAAGRSE 88
Score = 33.2 bits (76), Expect = 0.076
Identities = 10/92 (10%), Positives = 28/92 (30%), Gaps = 3/92 (3%)
Query: 551 EVKPMTSTSVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHY 610
+ T S++++W + ++ ++V G S + L
Sbjct: 15 ALASETPDSLQVSWTPPL-GRVLHYWLTYAPASGLGPEKSVSV--PGARSHVTLPDLQAA 71
Query: 611 SRYEFFLVPFFGSVDGKPSNLRAVRTLECEPS 642
++Y + + + + + PS
Sbjct: 72 TKYRVLVSAIYAAGRSEAVSATGQTACPSGPS 103
>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus
receptor, cell adhesion, integrin ligand, glycopr LFA-1
ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo
sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A
1d3e_I 1d3i_I 3tcx_A
Length = 185
Score = 50.9 bits (121), Expect = 3e-07
Identities = 35/196 (17%), Positives = 61/196 (31%), Gaps = 23/196 (11%)
Query: 191 VRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMN 250
PS + L G + C P + + + + +
Sbjct: 2 TSVSPSKVILPRGGSVLVTCSTSCDQPKLLGI-----ETPLPKKELLLP------GNNRK 50
Query: 251 LLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSE 310
+ ++ NV + P+ C G A+ LTV P V L P P+ +
Sbjct: 51 VYELSNVQEDSQPM---CYSNCPDGQSTAKTFLTVYWT---PERVEL-APLPSWQPVGKQ 103
Query: 311 ARLRCQVRGEG-----SVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKS 365
LRCQV G +V RGE+E+ P V + + + +++C +
Sbjct: 104 LTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGAQFSCRTEL 163
Query: 366 PHGSASWSASLRFESP 381
+P
Sbjct: 164 DLRPQGLELFENTSAP 179
Score = 50.5 bits (120), Expect = 4e-07
Identities = 27/129 (20%), Positives = 47/129 (36%), Gaps = 8/129 (6%)
Query: 106 PKDTTVSASSIIVFECSVGGDAVLTVHWK-RLGSAMPEDRMSVLPSRSLQLSDVRLEDAG 164
P + ++ CS D + + L + +LS+V ++
Sbjct: 6 PSKVILPRGGSVLVTCSTSCDQPKLLGIETPLPKKELLL--PGNNRKVYELSNV--QEDS 61
Query: 165 EYVCEAENAVGKISASATLTVQMAP-IVRERPSDLRLEVGRDAVFLCGIEGSPPPS--TF 221
+ +C + G+ +A LTV P V P VG+ C +EG P + T
Sbjct: 62 QPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTV 121
Query: 222 WMLEGNRSL 230
+L G + L
Sbjct: 122 VLLRGEKEL 130
Score = 47.8 bits (113), Expect = 4e-06
Identities = 34/192 (17%), Positives = 55/192 (28%), Gaps = 21/192 (10%)
Query: 7 EFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQ 66
+ V P + G + L+ C P+ L + K L L +
Sbjct: 1 QTSVSPSKVILPRGGSVLVTCSTSCDQPKL-LGIETPL------PKKELLLPGNNRKVYE 53
Query: 67 DSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKP-YIIRGPKDTTVSASSIIVFECSVGG 125
S +D + C + + L V P + P + + C V G
Sbjct: 54 LSNVQEDSQPMCYSNC-PDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKQLTLRCQVEG 112
Query: 126 ---DAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAG-EYVCEAENAVG------ 175
A LTV R + + P+ VR + G ++ C E +
Sbjct: 113 GAPRAQLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGAQFSCRTELDLRPQGLEL 172
Query: 176 --KISASATLTV 185
SA L
Sbjct: 173 FENTSAPYQLQT 184
>2cuh_A Tenascin-X; fibronectin type III domain, extracellular matrix,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 115
Score = 49.0 bits (117), Expect = 3e-07
Identities = 20/89 (22%), Positives = 30/89 (33%), Gaps = 9/89 (10%)
Query: 653 LNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRY 712
L +L WKPP + TY I V L S L +L Y
Sbjct: 19 LTEGFAVLHWKPPQ-----NPVDTYDIQVTAPGAPPLQ-AETPGSAVDYPLHDLVLHTNY 72
Query: 713 SVSLAATNRAGTGPYSRPALLSLTSGPEP 741
+ ++ + PA ++ T+G E
Sbjct: 73 TATVRGLRGPNL---TSPASITFTTGLEA 98
Score = 45.1 bits (107), Expect = 8e-06
Identities = 20/103 (19%), Positives = 39/103 (37%), Gaps = 16/103 (15%)
Query: 395 STYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATAT 454
S+ P PT+ +N T L W + + Y +++ ++P A
Sbjct: 5 SSGPDGPTQLRALNLTEGFAVLHWKP----PQNPVDTYDIQV-------TAPGAPPLQAE 53
Query: 455 WVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLS 497
A + + +L + YT VR L L++P+ ++
Sbjct: 54 TPGSAVDY-----PLHDLVLHTNYTATVRGLRGPNLTSPASIT 91
Score = 30.1 bits (68), Expect = 1.3
Identities = 13/94 (13%), Positives = 25/94 (26%), Gaps = 6/94 (6%)
Query: 551 EVKPMTSTSVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHY 610
+T L W+ + PP G A + + L +
Sbjct: 15 RALNLTEGFAVLHWKPPQNPVDTYDIQVTAPGAPPLQAET-----PGSAVDYPLHDLVLH 69
Query: 611 SRYEFFLVPFFGSVDGKPSNLRAVRTLECEPSGV 644
+ Y + G P+++ T P +
Sbjct: 70 TNYTATVRGLRGPNLTSPASIT-FTTGLEAPRDL 102
>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 112
Score = 48.8 bits (116), Expect = 3e-07
Identities = 17/109 (15%), Positives = 32/109 (29%), Gaps = 16/109 (14%)
Query: 292 PPPVILFGPANQTLPLRSEARLRCQVRGEGSVQWWRGEREV----------GSGPRVNVT 341
++ G + + +A + W+ E+ R +
Sbjct: 7 GTARLVAGLEDVQVYDGEDAVFSLDLSTIIQGTWFLNGEELKSNEPEGQVEPGALRYRIE 66
Query: 342 GDG---SLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIG 387
G L+L V +DSG SA+L + + P+ G
Sbjct: 67 QKGLQHRLILHAVKHQDSGALVGFSC---PGVQDSAALTIQESSGPSSG 112
Score = 45.0 bits (106), Expect = 8e-06
Identities = 18/105 (17%), Positives = 31/105 (29%), Gaps = 19/105 (18%)
Query: 99 KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSR------- 151
++ G +D V VF + W G + +
Sbjct: 8 TARLVAGLEDVQVYDGEDAVFSLDLSTII--QGTWFLNGEELKSNEPEGQVEPGALRYRI 65
Query: 152 -------SLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAP 189
L L V+ +D+G V + + SA LT+Q +
Sbjct: 66 EQKGLQHRLILHAVKHQDSGALVG---FSCPGVQDSAALTIQESS 107
Score = 35.0 bits (80), Expect = 0.021
Identities = 12/99 (12%), Positives = 23/99 (23%), Gaps = 18/99 (18%)
Query: 13 KSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN---------- 62
+ +V G+ A+ W NG + +
Sbjct: 16 EDVQVYDGEDAVFSL---DLSTIIQGTWFLNGEELKSNEPEGQVEPGALRYRIEQKGLQH 72
Query: 63 -LAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKP 100
L + + D G V + + A L +
Sbjct: 73 RLILHAVKHQDSGAL---VGFSCPGVQDS-AALTIQESS 107
>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion;
2.40A {Homo sapiens}
Length = 145
Score = 49.4 bits (117), Expect = 4e-07
Identities = 23/106 (21%), Positives = 46/106 (43%), Gaps = 13/106 (12%)
Query: 5 REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSK------RLRLV 58
+++ + + V AG T +L+C + H + +L W + K R++LV
Sbjct: 38 QDDSQPWTSDETVVAGGTVVLKC-QVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLV 96
Query: 59 DGT----NLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKP 100
T +++I + D+G Y C + R + +++ VL P
Sbjct: 97 TSTPHELSISISNVALADEGEYTCSI-FTMPVR-TAKSLVTVLGIP 140
Score = 49.4 bits (117), Expect = 5e-07
Identities = 24/103 (23%), Positives = 41/103 (39%), Gaps = 14/103 (13%)
Query: 100 PYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGS---------AMPEDRMSVLPS 150
D TV A +V +C V ++ W A+ ++R+ ++ S
Sbjct: 39 DDSQPWTSDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTS 98
Query: 151 R----SLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAP 189
S+ +S+V L D GEY C + +A + +TV P
Sbjct: 99 TPHELSISISNVALADEGEYTCSI-FTMPVRTAKSLVTVLGIP 140
Score = 47.9 bits (113), Expect = 2e-06
Identities = 22/132 (16%), Positives = 48/132 (36%), Gaps = 17/132 (12%)
Query: 270 GVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRGEG--SVQWWR 327
+++ ++ + + + +++T+ L+CQV+ S+QW
Sbjct: 16 HMDSPDLGTDDDDKAMADINLSQDDSQPW-TSDETVVAGGTVVLKCQVKDHEDSSLQWSN 74
Query: 328 --------GEREVGSGPRVNVTGDG----SLVLTDVTKEDSGEYTCVVKSPHGSASWSAS 375
GE+ R+ + S+ +++V D GEYTC + + +
Sbjct: 75 PAQQTLYFGEKRALRDNRIQLVTSTPHELSISISNVALADEGEYTCSI-FTMPVRTAKSL 133
Query: 376 LR-FESPTNPNI 386
+ P P I
Sbjct: 134 VTVLGIPQKPII 145
>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine,
ligand-receptor complex, signaling protein-cytokin; HET:
NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1
Length = 313
Score = 50.7 bits (120), Expect = 1e-06
Identities = 40/325 (12%), Positives = 75/325 (23%), Gaps = 43/325 (13%)
Query: 195 PSDLRLEVGRDAVFLCGI-----EGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGM 249
S + +G C I P P W L L G + S
Sbjct: 7 VSAPIVHLGDPITASCIIKQNCSHLDPEPQILWRL--GAELQPGGRQQRLSDGTQESI-- 62
Query: 250 NLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGP-----------DPNPPPVILF 298
+ + +++ T A L + L + L P + +I
Sbjct: 63 --ITLPHLNHTQAFLSCSLN-WGNSLQILDQVELRAGYPPAIPHNLSCLMNLTTSSLICQ 119
Query: 299 GPANQTLPLRSEARLRCQVRGEGSVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGE 358
L + L+ + + S+ + +
Sbjct: 120 WEPGPETHLPTSFTLKSFKSRG---NCQTQGDSILDCVPKDGQSHCSIPRKHLLLYQNMG 176
Query: 359 YTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGLTLAW 418
++ G++ + EP P A L L+W
Sbjct: 177 IWVQAENALGTSMSP-------QLCLDPMDVVKLEPPMLRTMDPSPEAAPPQAGCLQLSW 229
Query: 419 SRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVGLTY 478
+ ++ P A+ V + + + L Y
Sbjct: 230 EPWQPGLHINQK-CELRHK--------PQRGEASWALVGP-LPLEALQYELCGLLPATAY 279
Query: 479 TFLVRALNSHGLSAPSPLSDEIVLR 503
T +R + S S + LR
Sbjct: 280 TLQIRCIRWPLPGHWSDWSPSLELR 304
Score = 49.5 bits (117), Expect = 2e-06
Identities = 31/211 (14%), Positives = 57/211 (27%), Gaps = 18/211 (8%)
Query: 9 RVQPKSQRVAAGDTALLEC----GPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLA 64
+ + V GD C PEP ++W+ +RL ++
Sbjct: 4 HISVSAPIVHLGDPITASCIIKQNCSHLDPEPQILWRLGAELQPGGRQQRLSDGTQESII 63
Query: 65 IQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECSVG 124
C + + LR P I +S ++ + G
Sbjct: 64 TLPHLNHTQAFLSCSLNWGNSLQILDQVELRAGYPPAIPHNLSCLMNLTTSSLICQWEPG 123
Query: 125 GDAVLTVH------------WKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAEN 172
+ L + S + S+ + L +AEN
Sbjct: 124 PETHLPTSFTLKSFKSRGNCQTQGDSILDCVPKDGQSHCSIPRKHLLLYQNMGIWVQAEN 183
Query: 173 AVGKISASATLTVQMAPIVR-ERPSDLRLEV 202
A+G S L + +V+ E P ++
Sbjct: 184 ALGTSM-SPQLCLDPMDVVKLEPPMLRTMDP 213
Score = 42.6 bits (99), Expect = 4e-04
Identities = 34/252 (13%), Positives = 68/252 (26%), Gaps = 19/252 (7%)
Query: 493 PSPLSDEIVLRGTFSEGIFSE--GGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELT 550
P + S + S + + L + L+
Sbjct: 47 PGGRQQRLSDGTQESIITLPHLNHTQAFLSCSLNWGNSLQILDQVELRAGYPPAIPHNLS 106
Query: 551 EVKPMTSTSVKLTWEI-----LNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASG--FL 603
+ +T++S+ WE L T + SRG ++L + S
Sbjct: 107 CLMNLTTSSLICQWEPGPETHLPTSFTL-KSFKSRGNCQTQGDSILDCVPKDGQSHCSIP 165
Query: 604 VTGLAHYSRYEFFLVPF--FGSVDGKPSNLRAVRTLECEPSGVPQLT---DPVLLNATSV 658
L Y ++ G+ L + ++ EP + + + A +
Sbjct: 166 RKHLLLYQNMGIWVQAENALGTSMSPQLCLDPMDVVKLEPPMLRTMDPSPEAAPPQAGCL 225
Query: 659 LLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINM--TVSASTPTLLLTNLSAGIRYSVSL 716
L W+P G H ++ A + + L L Y++ +
Sbjct: 226 QLSWEPWQPGLHINQK--CELRHKPQRGEASWALVGPLPLEALQYELCGLLPATAYTLQI 283
Query: 717 AATNRAGTGPYS 728
G +S
Sbjct: 284 RCIRWPLPGHWS 295
>3qwq_B Adnectin; cell surface receptor, tyrosine kinase, glycoprotein,
adnect antitumor, drug, engineered binding protein; HET:
NAG BMA MAN FUC; 2.75A {Homo sapiens} PDB: 3qwr_D*
Length = 114
Score = 47.2 bits (112), Expect = 1e-06
Identities = 20/93 (21%), Positives = 32/93 (34%), Gaps = 6/93 (6%)
Query: 653 LNATSVLLKWKPPPVGTHNGVIRTYQIIVG-GGNNSALINMTVSASTPTLLLTNLSAGIR 711
TS+L+ W G + Y+I G G NS + TV T ++ L G+
Sbjct: 15 ATPTSLLISWDSGR-----GSYQYYRITYGETGGNSPVQEFTVPGPVHTATISGLKPGVD 69
Query: 712 YSVSLAATNRAGTGPYSRPALLSLTSGPEPRLE 744
Y++++ A R E
Sbjct: 70 YTITVYAVTDHKPHADGPHTYHESPISINYRTE 102
Score = 46.1 bits (109), Expect = 3e-06
Identities = 22/102 (21%), Positives = 35/102 (34%), Gaps = 14/102 (13%)
Query: 398 PGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVR 457
P +V T L ++W G S Y++ Y +G +
Sbjct: 4 SDVPRDLEVVAATPTSLLISWDS----GRGSYQYYRIT-Y-------GETGGNSPVQEFT 51
Query: 458 VATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDE 499
V V + T++ L G+ YT V A+ H A P +
Sbjct: 52 VPGPVHT--ATISGLKPGVDYTITVYAVTDHKPHADGPHTYH 91
Score = 34.1 bits (78), Expect = 0.049
Identities = 17/100 (17%), Positives = 28/100 (28%), Gaps = 7/100 (7%)
Query: 551 EVKPMTSTSVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHY 610
EV T TS+ ++W+ + I + V TV G ++GL
Sbjct: 11 EVVAATPTSLLISWDSGR-GSYQYYRITYGETGGNSPVQEFTV--PGPVHTATISGLKPG 67
Query: 611 SRYEFFLVPFFGSVDGKPSNLRAVRTLECEPSGVPQLTDP 650
Y + T P + T+
Sbjct: 68 VDYTITVYAVTDHKPHADGP----HTYHESPISINYRTEI 103
>2w1n_A O-GLCNACASE NAGJ; hexosaminidase, glycoside hydrolase, fibronectin
type-III, beta-N-acetylglucosaminidase, cohesin,
hydrolase; 1.80A {Clostridium perfringens}
Length = 238
Score = 49.5 bits (117), Expect = 1e-06
Identities = 25/181 (13%), Positives = 52/181 (28%), Gaps = 10/181 (5%)
Query: 549 LTEVKPMTSTSVKLTW-EILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGL 607
V+ ++ V + +I + V + P V VL A + +
Sbjct: 58 FEYVEAISDDGVFVNAKKIEDGKVRVLVSSLTGEPLPAKEVLAKVVLRAEAKTEGSNLSV 117
Query: 608 AHYSRYEFFLVPFFGSVDGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPV 667
+ S + + + K N+ + E + V +N +V + W P
Sbjct: 118 TNSSVGDGEGLVHEIAGTEKTVNIIEGTSPEIVVNPVRDFK-ASEINKKNVTVTWTEP-- 174
Query: 668 GTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPY 727
+ Y + G + + + L+ Y+ +AA G
Sbjct: 175 -ETTEGLEGYILYKDGKKVA-----EIGKDETSYTFKKLNRHTIYNFKIAAKYSNGEVSS 228
Query: 728 S 728
Sbjct: 229 K 229
Score = 45.7 bits (107), Expect = 2e-05
Identities = 18/156 (11%), Positives = 37/156 (23%), Gaps = 18/156 (11%)
Query: 340 VTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPG 399
+ L + E E + + + + + T + P
Sbjct: 93 LPAKEVLAKVVLRAEAKTEGSNLSVTNSSVGDGEGLVHEIAGTEKTVNIIEGTSPEIVVN 152
Query: 400 PPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVA 459
P +T+ W+ + L GY + + + + T
Sbjct: 153 PVRDFKASEINKKNVTVTWTEPET--TEGLEGYILYKDGKKVAEIGKDETSYT------- 203
Query: 460 TNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSP 495
L Y F + A S+G +
Sbjct: 204 ---------FKKLNRHTIYNFKIAAKYSNGEVSSKE 230
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI
domain, IG-like domain, extracellular receptor,
neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4
b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Length = 663
Score = 50.5 bits (119), Expect = 2e-06
Identities = 19/105 (18%), Positives = 37/105 (35%), Gaps = 3/105 (2%)
Query: 11 QPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRK 70
+ G TA L+C + WK + E+ K + NL I + +
Sbjct: 539 SYRQHFFKHGGTAELKCSQK--SNLARVFWKFQNGVLKAESPKYGLMGRK-NLLIFNLSE 595
Query: 71 TDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASS 115
D G YQC+ + + V + +++ ++ P +
Sbjct: 596 GDSGVYQCLSEERVKNKTVFQVVAKHVLEVKVVPKPVVAPTLSVV 640
Score = 48.2 bits (113), Expect = 1e-05
Identities = 24/149 (16%), Positives = 45/149 (30%), Gaps = 17/149 (11%)
Query: 287 GPDPNPPPVILFGPANQTLPLRSEARLRCQVRG-EGSVQWWRGEREV-GSGPRVNVTGDG 344
G P A L+C + V W + P+ + G
Sbjct: 527 GDASVCPDKSKGSYRQHFFKHGGTAELKCSQKSNLARVFWKFQNGVLKAESPKYGLMGRK 586
Query: 345 SLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKP 404
+L++ ++++ DSG Y C+ + + + E P P P
Sbjct: 587 NLLIFNLSEGDSGVYQCLSEE-RVKNKTVFQVVAK----------HVLEVKVVPKPVVAP 635
Query: 405 TLVNQTANGLTLAWSRNNQIGSSSLLGYQ 433
TL G +A ++ +S +
Sbjct: 636 TLSVVQTEGSRIAT----KVLVASTKHHH 660
Score = 47.5 bits (111), Expect = 2e-05
Identities = 15/75 (20%), Positives = 31/75 (41%), Gaps = 7/75 (9%)
Query: 130 TVHWKRLGSAMP--EDRMSVLPSRSLQLSDVRLEDAGEYVCEAENA-----VGKISASAT 182
V WK + + ++ ++L + ++ D+G Y C +E V ++ A
Sbjct: 563 RVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEERVKNKTVFQVVAKHV 622
Query: 183 LTVQMAPIVRERPSD 197
L V++ P P+
Sbjct: 623 LEVKVVPKPVVAPTL 637
>1j8k_A Fibronectin; EDA, TYPEIII domain, protein binding; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 94
Score = 45.9 bits (109), Expect = 2e-06
Identities = 16/95 (16%), Positives = 26/95 (27%), Gaps = 14/95 (14%)
Query: 400 PPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVA 459
P + + + +AW + Y+V S D +
Sbjct: 4 RPKGLAFTDVDVDSIKIAWES----PQGQVSRYRVTY--------SSPEDGIHELFPAPD 51
Query: 460 TNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPS 494
+ + L G YT V AL+ S P
Sbjct: 52 GEEDT--AELQGLRPGSEYTVSVVALHDDMESQPL 84
Score = 44.7 bits (106), Expect = 6e-06
Identities = 13/74 (17%), Positives = 25/74 (33%), Gaps = 6/74 (8%)
Query: 654 NATSVLLKWKPPPVGTHNGVIRTYQIIVG-GGNNSALINMTVSASTPTLLLTNLSAGIRY 712
+ S+ + W+ P G + Y++ + + T L L G Y
Sbjct: 14 DVDSIKIAWESP-----QGQVSRYRVTYSSPEDGIHELFPAPDGEEDTAELQGLRPGSEY 68
Query: 713 SVSLAATNRAGTGP 726
+VS+ A +
Sbjct: 69 TVSVVALHDDMESQ 82
Score = 31.6 bits (72), Expect = 0.23
Identities = 15/87 (17%), Positives = 25/87 (28%), Gaps = 3/87 (3%)
Query: 551 EVKPMTSTSVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHY 610
+ S+K+ WE YS D + GE + GL
Sbjct: 9 AFTDVDVDSIKIAWESPQGQVSRYRVTYSSPEDGIHEL---FPAPDGEEDTAELQGLRPG 65
Query: 611 SRYEFFLVPFFGSVDGKPSNLRAVRTL 637
S Y +V ++ +P +
Sbjct: 66 SEYTVSVVALHDDMESQPLIGTQSTAI 92
>2dkm_A Collagen alpha-1(XX) chain; FN3 domain, KIAA1510, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 104
Score = 46.0 bits (109), Expect = 3e-06
Identities = 20/100 (20%), Positives = 28/100 (28%), Gaps = 15/100 (15%)
Query: 398 PGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVR 457
PP TL T + L W S+ Y V SP+
Sbjct: 9 LPPPRALTLAAVTPRTVHLTWQ-----PSAGATHYLVRC--------SPASPKGEEEERE 55
Query: 458 VATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLS 497
V P + + L G Y V++L S +
Sbjct: 56 VQVGRPE--VLLDGLEPGRDYEVSVQSLRGPEGSEARGIR 93
Score = 42.5 bits (100), Expect = 4e-05
Identities = 21/88 (23%), Positives = 28/88 (31%), Gaps = 5/88 (5%)
Query: 653 LNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRY 712
+ +V L W+P TH V G V P +LL L G Y
Sbjct: 20 VTPRTVHLTWQPSAGATHYLV--RCSPASPKGEEEE---REVQVGRPEVLLDGLEPGRDY 74
Query: 713 SVSLAATNRAGTGPYSRPALLSLTSGPE 740
VS+ + + TSGP
Sbjct: 75 EVSVQSLRGPEGSEARGIRARTPTSGPS 102
Score = 36.3 bits (84), Expect = 0.007
Identities = 19/92 (20%), Positives = 29/92 (31%), Gaps = 5/92 (5%)
Query: 551 EVKPMTSTSVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHY 610
+ +T +V LTW+ + + P V L+ GL
Sbjct: 16 TLAAVTPRTVHLTWQ--PSAGATHYLVRCSPASPKGEEEEREV--QVGRPEVLLDGLEPG 71
Query: 611 SRYEFFLVPFFGSVDGKPSNLRAVRTLECEPS 642
YE + G + +RA RT PS
Sbjct: 72 RDYEVSVQSLRGPEGSEARGIRA-RTPTSGPS 102
>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation
marker blast-1, BCM1 surface antigen, leukocyte antigen
MEM-102, TCT.1; NMR {Homo sapiens}
Length = 121
Score = 46.1 bits (109), Expect = 3e-06
Identities = 22/108 (20%), Positives = 34/108 (31%), Gaps = 16/108 (14%)
Query: 11 QPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHP--IDFENSK----------RLRLV 58
V +G L L W +++++ K R+RL
Sbjct: 10 HLVHMTVVSGSNVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLD 69
Query: 59 DGT-NLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLV---KPYI 102
+ L I +K D+ Y V G + L+VL KP I
Sbjct: 70 PQSGALYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQVLDPVPKPVI 117
Score = 40.7 bits (95), Expect = 3e-04
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 343 DGSLVLTDVTKEDSGEYTCVVKSPHGSA-SWSASLR-FESPTNPNI 386
G+L ++ V KED+ Y V G+ W L+ + P I
Sbjct: 72 SGALYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQVLDPVPKPVI 117
Score = 36.0 bits (83), Expect = 0.013
Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Query: 142 EDRMSVLPSR-SLQLSDVRLEDAGEYVCEAENAVGKI-SASATLTV 185
+ R+ + P +L +S V+ ED Y+ G L V
Sbjct: 63 KGRVRLDPQSGALYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQV 108
>2cum_A Tenascin-X; hexabrachion-like, fibronectin type III domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 105
Score = 45.5 bits (108), Expect = 4e-06
Identities = 15/89 (16%), Positives = 23/89 (25%), Gaps = 9/89 (10%)
Query: 653 LNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRY 712
+ + LL W PP Y + + + + L L Y
Sbjct: 19 VTPRTALLTWTEPP-----VRPAGYLLSFHTPGGQ-TQEILLPGGITSHQLLGLFPSTSY 72
Query: 713 SVSLAATNRAGTGPYSRPALLSLTSGPEP 741
+ L A P S T+G
Sbjct: 73 NARLQAMWGQS---LLPPVSTSFTTGGLR 98
Score = 43.6 bits (103), Expect = 2e-05
Identities = 13/102 (12%), Positives = 26/102 (25%), Gaps = 16/102 (15%)
Query: 396 TYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATW 455
+ P T L W+ GY + ++
Sbjct: 6 SGLEAPRDLEAKEVTPRTALLTWTE----PPVRPAGYLLSFHT----------PGGQTQE 51
Query: 456 VRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLS 497
+ + + S + L +Y ++A+ L P S
Sbjct: 52 ILLPGGITS--HQLLGLFPSTSYNARLQAMWGQSLLPPVSTS 91
Score = 29.3 bits (66), Expect = 2.0
Identities = 15/79 (18%), Positives = 23/79 (29%), Gaps = 5/79 (6%)
Query: 551 EVKPMTSTSVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHY 610
E K +T + LTW G + +L G + + GL
Sbjct: 15 EAKEVTPRTALLTWTEPPVR-PAGYLLSFHTPGGQTQ----EILLPGGITSHQLLGLFPS 69
Query: 611 SRYEFFLVPFFGSVDGKPS 629
+ Y L +G P
Sbjct: 70 TSYNARLQAMWGQSLLPPV 88
>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein
receptor, immunoglobulin V domain fold, symmetric dimer;
1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B
2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B
1p6a_B
Length = 126
Score = 46.0 bits (109), Expect = 5e-06
Identities = 25/134 (18%), Positives = 40/134 (29%), Gaps = 45/134 (33%)
Query: 277 DLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVR------GEGSVQWWRGER 330
D A SL+++ P+ G A L C+ G ++W
Sbjct: 1 DFA-RSLSITTPEE--MIEKAKG---------ETAYLPCKFTLSPEDQGPLDIEWLISPA 48
Query: 331 EVGSGPRVNVT---------------------------GDGSLVLTDVTKEDSGEYTCVV 363
+ +V + GD S+ +T++ D G Y C V
Sbjct: 49 DNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKV 108
Query: 364 KSPHGSASWSASLR 377
K G A+ L
Sbjct: 109 KKAPGVANKKIHLV 122
Score = 43.3 bits (102), Expect = 4e-05
Identities = 20/122 (16%), Positives = 34/122 (27%), Gaps = 31/122 (25%)
Query: 8 FRVQPKSQRVAA--GDTALLEC-------------------GPPRGHPEPTLVWKKNGHP 46
+ + + G+TA L C + ++
Sbjct: 6 LSITTPEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKI 65
Query: 47 IDFENSK---RLRLVDGT------NLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVL 97
D R+ ++ + + + +D G YQC VK G L VL
Sbjct: 66 YDDYYPDLKGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKK-IHLVVL 124
Query: 98 VK 99
VK
Sbjct: 125 VK 126
Score = 40.2 bits (94), Expect = 4e-04
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 152 SLQLSDVRLEDAGEYVCEAENAVGKISASATLTV 185
S+ +++++L D G Y C+ + A G + L V
Sbjct: 90 SINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVV 123
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold,
natural killer cell receptor, immune SY; HET: NAG; 1.80A
{Homo sapiens} PDB: 1im9_D
Length = 316
Score = 48.3 bits (115), Expect = 7e-06
Identities = 21/92 (22%), Positives = 29/92 (31%), Gaps = 1/92 (1%)
Query: 283 LTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRGEGSVQWWRGEREVGSGPRVNVTG 342
S P + P + +P LRC R + E +
Sbjct: 14 DKGSHMGGQDKPFLSAWP-SAVVPRGGHVTLRCHYRHRFNNFMLYKEDRIHIPIFHGRIF 72
Query: 343 DGSLVLTDVTKEDSGEYTCVVKSPHGSASWSA 374
S ++ VT +G YTC PH WSA
Sbjct: 73 QESFNMSPVTTAHAGNYTCRGSHPHSPTGWSA 104
Score = 45.3 bits (107), Expect = 6e-05
Identities = 45/305 (14%), Positives = 65/305 (21%), Gaps = 39/305 (12%)
Query: 92 AVLRVLVKPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSR 151
+ + KP++ P V + C + +
Sbjct: 17 SHMGGQDKPFLSAWP-SAVVPRGGHVTLRCHYRHRFN-NFMLYKEDRIHIPIFHGRIFQE 74
Query: 152 SLQLSDVRLEDAGEYVCEAENAVG-----KISASATLTVQMA---PIVRERPSDLRLEVG 203
S +S V AG Y C + S + V P + P L ++ G
Sbjct: 75 SFNMSPVTTAHAGNYTCRGSHPHSPTGWSAPSNPVVIMVTGNHRKPSLLAHPGPL-VKSG 133
Query: 204 RDAVFLCGIEGSPPPSTF-WMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAA 262
+ C F EG + I + A
Sbjct: 134 ERVILQC--WSDIMFEHFFLHKEGISKDPS-----RLVGQIHDGVSKANFSIGPMMLALA 186
Query: 263 PLIIL----CLGVNAAGSDLARAS-----LTVSGPDPNPPPVILFGPANQTLPLRSEARL 313
C G A + V+GP P GP + L
Sbjct: 187 -----GTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQPGP---KVQAGESVTL 238
Query: 314 RCQVRGEGSVQWWRGEREVGSGPRVNVTGDGSLVLTD---VTKEDSGEYTCVVKSPHGSA 370
C R + E V D G Y C H
Sbjct: 239 SCSSRSSYDMYHLSREGGAHERRLPAVRKVNRTFQADFPLGPATHGGTYRCFGSFRHSPY 298
Query: 371 SWSAS 375
WS
Sbjct: 299 EWSDP 303
Score = 36.0 bits (83), Expect = 0.056
Identities = 25/164 (15%), Positives = 41/164 (25%), Gaps = 10/164 (6%)
Query: 14 SQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDD 73
V +G+ +L+C L + + V N +I
Sbjct: 127 GPLVKSGERVILQCWSDIMFEHFFLHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLALA 186
Query: 74 GRYQCVVKNVAGTREST---DAV-LRVLVKPYI--IRGPKDTTVSASSIIVFECSVGGDA 127
G Y+C + + D + + V + V A + CS
Sbjct: 187 GTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQPGPKVQAGESVTLSCSSRSSY 246
Query: 128 VLTVHWKRLGSAMPEDRMSVLP---SRSLQLSDVRLEDAGEYVC 168
H R G A +V + G Y C
Sbjct: 247 D-MYHLSREGGAHERRLPAVRKVNRTFQADFPLGPATHGGTYRC 289
>1k85_A Chitinase A1; fibronectin type III domain, chitin binding domain,
carbohydrase, horizontal gene transfer, hydrolase; NMR
{Bacillus circulans} SCOP: b.1.2.1
Length = 88
Score = 44.2 bits (105), Expect = 7e-06
Identities = 25/99 (25%), Positives = 40/99 (40%), Gaps = 21/99 (21%)
Query: 398 PGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVR 457
P PT QT + +TL+W+ + + + GY V +G T
Sbjct: 4 PTAPTNLASTAQTTSSITLSWTAST--DNVGVTGYDVY-----------NGTALATT--- 47
Query: 458 VATNVPSPILTVTNLTVGLTYTFLVRALNSHG-LSAPSP 495
V T++ L +YTF V+A ++ G +SA S
Sbjct: 48 ----VTGTTATISGLAADTSYTFTVKAKDAAGNVSAASN 82
Score = 34.2 bits (79), Expect = 0.029
Identities = 14/69 (20%), Positives = 28/69 (40%), Gaps = 10/69 (14%)
Query: 655 ATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRYSV 714
+S+ L W T N + Y + G + + + T ++ L+A Y+
Sbjct: 17 TSSITLSWTAS---TDNVGVTGYDVYNGT-------ALATTVTGTTATISGLAADTSYTF 66
Query: 715 SLAATNRAG 723
++ A + AG
Sbjct: 67 TVKAKDAAG 75
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein
binding; HET: NAG NDG; 2.40A {Homo sapiens}
Length = 590
Score = 48.1 bits (113), Expect = 1e-05
Identities = 11/56 (19%), Positives = 20/56 (35%), Gaps = 1/56 (1%)
Query: 308 RSEARLRCQVRG-EGSVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCV 362
S L C + + W E S + + + L + ++T + G Y C
Sbjct: 515 NSRYYLSCPMESRHATYSWRHKENVEQSCEPGHQSPNCILFIENLTAQQYGHYFCE 570
Score = 41.2 bits (95), Expect = 0.002
Identities = 13/90 (14%), Positives = 31/90 (34%), Gaps = 3/90 (3%)
Query: 99 KPYIIRGPKDTTVSASSIIVFECSVGGDAVLTVHWKRLGSAMPE-DRMSVLPSRSLQLSD 157
+ +++ +S C + T W+ + + P+ L + +
Sbjct: 500 PKPDKAPLQKVSLAPNSRYYLSCPME-SRHATYSWRHKENVEQSCEPGHQSPNCILFIEN 558
Query: 158 VRLEDAGEYVCEA-ENAVGKISASATLTVQ 186
+ + G Y CEA E + + + L +
Sbjct: 559 LTAQQYGHYFCEAQEGSYFREAQHWQLLPE 588
Score = 38.1 bits (87), Expect = 0.015
Identities = 10/75 (13%), Positives = 18/75 (24%), Gaps = 4/75 (5%)
Query: 5 REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLA 64
+ + + +A L C T W+ + L
Sbjct: 500 PKPDKAPLQKVSLAPNSRYYLSCPME--SRHATYSWRHKENVEQSCEPGHQSPNCI--LF 555
Query: 65 IQDSRKTDDGRYQCV 79
I++ G Y C
Sbjct: 556 IENLTAQQYGHYFCE 570
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A
{Homo sapiens}
Length = 184
Score = 46.0 bits (109), Expect = 1e-05
Identities = 29/163 (17%), Positives = 47/163 (28%), Gaps = 16/163 (9%)
Query: 9 RVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDS 68
+ P S V L C P G +K R D L I
Sbjct: 12 QALP-SSLVPLEKPVTLRCQGPPGVDL--YRLEKLSSS---------RYQDQAVLFIPAM 59
Query: 69 RKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYI---IRGPKDTTVSASSIIVFECSVGG 125
+++ GRY+C +N + +D + V + + VS+ + +C
Sbjct: 60 KRSLAGRYRCSYQNGSLWSLPSDQLELVATGVFAKPSLSAQPGPAVSSGGDVTLQCQ-TR 118
Query: 126 DAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVC 168
+ G P S + V +G Y C
Sbjct: 119 YGFDQFALYKEGDPAPYKNPERWYRASFPIITVTAAHSGTYRC 161
Score = 43.6 bits (103), Expect = 7e-05
Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 7/85 (8%)
Query: 292 PPPVILFGPANQTLPLRSEARLRCQVRGEGSVQWWRGEREVGSGPRVNVTGDGSLVLTDV 351
P P + P + +PL LRCQ G V +R E+ S + L + +
Sbjct: 7 PKPSLQALP-SSLVPLEKPVTLRCQ--GPPGVDLYRLEKLSSSRYQD----QAVLFIPAM 59
Query: 352 TKEDSGEYTCVVKSPHGSASWSASL 376
+ +G Y C ++ + S L
Sbjct: 60 KRSLAGRYRCSYQNGSLWSLPSDQL 84
Score = 38.6 bits (90), Expect = 0.004
Identities = 19/93 (20%), Positives = 26/93 (27%), Gaps = 1/93 (1%)
Query: 283 LTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRGEGSVQWWRGEREVGSGPRVNVTG 342
L + P + P + + L+CQ R E +
Sbjct: 84 LELVATGVFAKPSLSAQPG-PAVSSGGDVTLQCQTRYGFDQFALYKEGDPAPYKNPERWY 142
Query: 343 DGSLVLTDVTKEDSGEYTCVVKSPHGSASWSAS 375
S + VT SG Y C S WSA
Sbjct: 143 RASFPIITVTAAHSGTYRCYSFSSRDPYLWSAP 175
Score = 33.6 bits (77), Expect = 0.18
Identities = 18/108 (16%), Positives = 33/108 (30%), Gaps = 14/108 (12%)
Query: 130 TVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQ--- 186
++L S+ +D L + ++ AG Y C +N S L +
Sbjct: 37 LYRLEKLSSSRYQD------QAVLFIPAMKRSLAGRYRCSYQNGSLWSLPSDQLELVATG 90
Query: 187 --MAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIY 232
P + +P + G D C + F + + Y
Sbjct: 91 VFAKPSLSAQPGP-AVSSGGDVTLQC--QTRYGFDQFALYKEGDPAPY 135
>2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor
complex LIFR LIF, cytokine RE cytokine complex; HET: NAG
FUC MAN; 4.00A {Mus musculus}
Length = 488
Score = 47.6 bits (112), Expect = 1e-05
Identities = 42/334 (12%), Positives = 81/334 (24%), Gaps = 45/334 (13%)
Query: 175 GKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPG 234
S ++ P D + G + C + + P
Sbjct: 190 SDWSPLKNISWIRNTETNVFPQDKVVLAGSNMTICCMSPTKVLSGQIG------NTLRPL 243
Query: 235 DRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLAR-----ASLTVSGPD 289
+ I + VS + II + G+ + +S
Sbjct: 244 IHLYGQTVAIH------ILNIPVSENSGTNIIFITDDDVYGTVVFAGYPPDVPQKLSCET 297
Query: 290 PNPPPVILFGPANQTLPLRSEARLRCQVRGEGSVQWWRGEREVGSGPRVNVTGDGSLVLT 349
+ +I + L + + G+ V L +
Sbjct: 298 HDLKEIICSWNPGRITGLVGPRNTEYTLF-----ESISGKSAVFHRIEGLTNETYRLGVQ 352
Query: 350 DVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQ 409
++ +T ++P G A + + P PT + +
Sbjct: 353 MHPGQEIHNFTLTGRNPLGQAQSAVVIN--------------VTERVAPHDPTSLKVKDI 398
Query: 410 TANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTV 469
+ +T +W + L Q+E+ + + + V
Sbjct: 399 NSTVVTFSWY-LPGNFTKINLLCQIEICKA-------NSKKEVRNATIRGAEDSTYHVAV 450
Query: 470 TNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLR 503
L YTF VR +S S SDE
Sbjct: 451 DKLNPYTAYTFRVRC-SSKTFWKWSRWSDEKRHL 483
Score = 38.4 bits (88), Expect = 0.012
Identities = 22/185 (11%), Positives = 48/185 (25%), Gaps = 14/185 (7%)
Query: 557 STSVKLTWEILNTDYIEGV----YIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSR 612
+ +W + G Y + ++V E V
Sbjct: 300 LKEIICSWNPGRITGLVGPRNTEYTLFESISGKSAVFHRIEGLTNETYRLGVQMHPGQEI 359
Query: 613 YEFFLVPFFGSVDGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNG 672
+ F L + G+ + + E P +N+T V W P T
Sbjct: 360 HNFTLTGR--NPLGQAQSAVVINVTERVAPHDPTSLKVKDINSTVVTFSWYLPGNFTKIN 417
Query: 673 VIRTYQI---IVGGGNNSALINMTVSASTPTLL-LTNLSAGIRYSVSL-AATNRAGT-GP 726
++ QI + + + + + L+ Y+ + ++
Sbjct: 418 LL--CQIEICKANSKKEVRNATIRGAEDSTYHVAVDKLNPYTAYTFRVRCSSKTFWKWSR 475
Query: 727 YSRPA 731
+S
Sbjct: 476 WSDEK 480
Score = 30.7 bits (68), Expect = 2.7
Identities = 33/209 (15%), Positives = 59/209 (28%), Gaps = 29/209 (13%)
Query: 6 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAI 65
E V P+ + V AG + C + I V L I
Sbjct: 204 TETNVFPQDKVVLAGSNMTICC-MSPTKVLSGQIGNTLRPLIHLYGQT----VAIHILNI 258
Query: 66 QDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFECS--V 123
S + +V GT V+ Y P+ + + CS
Sbjct: 259 PVSENSGTNIIFITDDDVYGT---------VVFAGYPPDVPQKLSCETHDLKEIICSWNP 309
Query: 124 GGDAVL--------TVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYV--CEAENA 173
G L T+ G + R+ L + + +L + N
Sbjct: 310 GRITGLVGPRNTEYTLFESISGKSAVFHRIEGLTNETYRLGVQMHPGQEIHNFTLTGRNP 369
Query: 174 VGKISASATLTVQMAPIVRER-PSDLRLE 201
+G A + + + + V P+ L+++
Sbjct: 370 LG--QAQSAVVINVTERVAPHDPTSLKVK 396
>2cui_A Tenascin-X; fibronectin type III domain, extracellular matirx,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 112
Score = 44.2 bits (104), Expect = 1e-05
Identities = 17/104 (16%), Positives = 37/104 (35%), Gaps = 11/104 (10%)
Query: 645 PQLTDPVLLNAT--SVLLKWKPPPVGTHNGVIRTYQIIVGG-----GNNSALINMTVSAS 697
P+L+ + + T S+ L W+ PP G + + + + + V +
Sbjct: 10 PRLSQLSVTDVTTSSLRLNWEAPP-GAFDSFLLRFGVPSPSTLEPHPRPLLQRELMVPGT 68
Query: 698 TPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGPEP 741
+ +L +L +G YS++L + + P
Sbjct: 69 RHSAVLRDLRSGTLYSLTLYGLRGPHKAD---SIQGTARTLSGP 109
Score = 40.7 bits (95), Expect = 2e-04
Identities = 11/96 (11%), Positives = 28/96 (29%), Gaps = 6/96 (6%)
Query: 398 PGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVR 457
++ ++ + T + L L W + + + + + P +
Sbjct: 9 RPRLSQLSVTDVTTSSLRLNW----EAPPGAFDSFLLRFGVPSPSTLEPHPRPLLQRELM 64
Query: 458 VATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAP 493
V S + +L G Y+ + L +
Sbjct: 65 VPGTRHS--AVLRDLRSGTLYSLTLYGLRGPHKADS 98
Score = 39.6 bits (92), Expect = 7e-04
Identities = 19/98 (19%), Positives = 33/98 (33%), Gaps = 6/98 (6%)
Query: 551 EVKPMTSTSVKLTWEILNTDYIEGVYIY-----SRGLDPPASVAMLTVLHAGEASGFLVT 605
V +T++S++L WE + + + S P + ++ G ++
Sbjct: 16 SVTDVTTSSLRLNWEAPPGAFDSFLLRFGVPSPSTLEPHPRPLLQRELMVPGTRHSAVLR 75
Query: 606 GLAHYSRYEFFLVPFFGSVDGKPSNLRAVRTLECEPSG 643
L + Y L G A RTL SG
Sbjct: 76 DLRSGTLYSLTLYGLRGPHKADSIQGTA-RTLSGPSSG 112
>1bqu_A Protein (GP130); cytokine receptor, glycoprotein 130, interleukine
6 R beta subunit, signaling protein; 2.00A {Homo
sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1pvh_A 1bj8_A
Length = 215
Score = 46.1 bits (109), Expect = 2e-05
Identities = 22/108 (20%), Positives = 37/108 (34%), Gaps = 11/108 (10%)
Query: 398 PGPPTKPTL--VNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATW 455
P PP ++ + ++ L L W+ N I S +L Y ++ + +
Sbjct: 104 PNPPHNLSVINSEELSSILKLTWT-NPSIKSVIILKYNIQYR--------TKDASTWSQI 154
Query: 456 VRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLR 503
T TV +L Y F +R + G S S+E
Sbjct: 155 PPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGI 202
Score = 44.2 bits (104), Expect = 7e-05
Identities = 19/180 (10%), Positives = 48/180 (26%), Gaps = 13/180 (7%)
Query: 556 TSTSVKLTWEILNTDYIEGVYI--YSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRY 613
++ W+ ++E + A S + ++
Sbjct: 20 EGKKMRCEWDGGRETHLETNFTLKSEWATHKFADC---KAKRDTPTSCTVDYSTVYFVNI 76
Query: 614 EFFLVPFFGSVDGKPSNLRAVRTLECEPSGVPQLTDPVLLNAT--SVLLKWKPPPVGTHN 671
E ++ ++ S+ + P + + L W P + +
Sbjct: 77 EVWVE-AENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIK--S 133
Query: 672 GVIRTYQI---IVGGGNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYS 728
+I Y I S + +++ + + +L Y + G G +S
Sbjct: 134 VIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWS 193
Score = 31.1 bits (70), Expect = 1.3
Identities = 10/89 (11%), Positives = 23/89 (25%), Gaps = 4/89 (4%)
Query: 641 PSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIV-GGGNNSALINMTVSASTP 699
P P+ ++ + +W G + + + + A T
Sbjct: 7 PPEKPKNLSCIVNEGKKMRCEWDG---GRETHLETNFTLKSEWATHKFADCKAKRDTPTS 63
Query: 700 TLLLTNLSAGIRYSVSLAATNRAGTGPYS 728
+ + + V + A N G
Sbjct: 64 CTVDYSTVYFVNIEVWVEAENALGKVTSD 92
>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology,
IGSF, cell SU receptor signalling, glycosylation,
membrane protein; HET: NAG; 2.90A {Homo sapiens}
Length = 118
Score = 43.3 bits (102), Expect = 3e-05
Identities = 21/115 (18%), Positives = 34/115 (29%), Gaps = 28/115 (24%)
Query: 103 IRGPKDTTVSASSIIVFECSV-----GGDAVLTVHWKRLGSA--------------MPED 143
++ P + C + V + W R G +
Sbjct: 4 VQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESK 63
Query: 144 RMSVLPSR--------SLQLSDVRLEDAGEYVCEAEN-AVGKISASATLTVQMAP 189
R+ + +R SL++ +R+ED G Y C G S L V P
Sbjct: 64 RLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKP 118
Score = 42.5 bits (100), Expect = 6e-05
Identities = 29/118 (24%), Positives = 40/118 (33%), Gaps = 24/118 (20%)
Query: 7 EFRVQ-PKSQRVAAGDTALLEC---GPPRGHPEPTLV-WKKNGHP-----------IDFE 50
+ VQ P GD+ L C P + + W ++G +
Sbjct: 1 DVVVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYS 60
Query: 51 NSKRLRLV--------DGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKP 100
SKRL V +L + R D+G Y C+ S D LRVL KP
Sbjct: 61 ESKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKP 118
Score = 40.6 bits (95), Expect = 3e-04
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Query: 328 GEREVGSGPRVNVT-GDGSLVLTDVTKEDSGEYTC-VVKSPHGSASWSASLR 377
+R R+ + SL + + ED G YTC V P GS S LR
Sbjct: 62 SKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLR 113
>3pv7_A B7-H6, IG-like domain-containing protein
DKFZP686O24166/DKFZP686I21167; NK cell receptor,
receptor-ligand complex, immune system; HET: NAG; 2.00A
{Homo sapiens} PDB: 3pv6_A*
Length = 248
Score = 45.1 bits (106), Expect = 4e-05
Identities = 30/232 (12%), Positives = 60/232 (25%), Gaps = 47/232 (20%)
Query: 10 VQPKSQRVAAGDTALLEC----GPPRGHPEPTLVW---------------KKNGHPIDFE 50
+ +Q D + C P + W H F
Sbjct: 8 MAGGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFR 67
Query: 51 NSKRLRLVDGTN----LAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGP 106
+ + L + + + G Y+C V + T L V+ P
Sbjct: 68 PGAIVSPWRLKSGDASLRLPGIQLEEAGEYRCEVVVTPLKAQGTV-QLEVVASPASRLLL 126
Query: 107 KDTTVSASSIIVFECSVGG---DAVLTVHWKRLGSAMPEDRMSVLPSRS----------- 152
+ + C G +A+ + W++ P +
Sbjct: 127 DQVGMKENEDKYM-CESSGFYPEAI-NITWEKQTQKFPHPIEISEDVITGPTIKNMDGTF 184
Query: 153 -----LQLSDVRLEDAGEYVCEAENA--VGKISASATLTVQMAPIVRERPSD 197
L+L+ + + Y C +A + ++ TLT + +D
Sbjct: 185 NVTSCLKLNSSQEDPGTVYQCVVRHASLHTPLRSNFTLTAARHSLSETEKTD 236
Score = 44.7 bits (105), Expect = 6e-05
Identities = 24/179 (13%), Positives = 47/179 (26%), Gaps = 40/179 (22%)
Query: 300 PANQTLPLRSEARLRCQVRGEG-------SVQWWRGEREVGSG---------------PR 337
Q PL + C + + W+ P
Sbjct: 10 GGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPG 69
Query: 338 VNVT------GDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASL-RFESPTNPNIGFFR 390
V+ GD SL L + E++GEY C V A + L SP +
Sbjct: 70 AIVSPWRLKSGDASLRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVVASPASR------ 123
Query: 391 APEPSTYPGPPTKPTLVNQTANG----LTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSS 445
+ + +++ + + W + Q + + + + +
Sbjct: 124 -LLLDQVGMKENEDKYMCESSGFYPEAINITWEKQTQKFPHPIEISEDVITGPTIKNMD 181
Score = 43.5 bits (102), Expect = 2e-04
Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 3/78 (3%)
Query: 152 SLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCG 211
SL+L ++LE+AGEY CE K + L V +P R + ++ + ++C
Sbjct: 83 SLRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVVASPASRLLLDQVGMK-ENEDKYMCE 141
Query: 212 IEG-SPPPSTF-WMLEGN 227
G P W +
Sbjct: 142 SSGFYPEAINITWEKQTQ 159
Score = 34.3 bits (78), Expect = 0.14
Identities = 28/232 (12%), Positives = 59/232 (25%), Gaps = 47/232 (20%)
Query: 195 PSDLRLEVGRDAVFLCGIEGSPPPS-----TFWML----EGNRSLIYPGDRVDNI----Q 241
+ + C I S P + W ++
Sbjct: 10 GGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPG 69
Query: 242 AEITSDGMNL----LKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVIL 297
A ++ + L++ + A C V L V P L
Sbjct: 70 AIVSPWRLKSGDASLRLPGIQLEEAGEYR-CEVVVTPLKAQGTVQLEVVAS----PASRL 124
Query: 298 FGPANQTLPLRSEARLRCQVRG----EGSVQWWRGEREVGSGPRVNVT---------GDG 344
Q +E + C+ G ++ W + ++ ++ DG
Sbjct: 125 LLD--QVGMKENEDKYMCESSGFYPEAINITWEKQTQKFPHPIEISEDVITGPTIKNMDG 182
Query: 345 S------LVLTDVTKEDSGEYTCVVK----SPHGSASWSASLRFESPTNPNI 386
+ L L ++ Y CVV+ ++++ + S +
Sbjct: 183 TFNVTSCLKLNSSQEDPGTVYQCVVRHASLHTPLRSNFTLTAARHSLSETEK 234
>2dle_A Receptor-type tyrosine-protein phosphatase ETA; protein-tyrosine
phosphatase ETA, R-PTP-ETA, HPTP ETA, protein-tyrosine
phosphatase receptor type J; NMR {Homo sapiens}
Length = 104
Score = 42.0 bits (98), Expect = 6e-05
Identities = 24/101 (23%), Positives = 42/101 (41%), Gaps = 10/101 (9%)
Query: 641 PSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPT 700
V +T V ++ATS+ L WK + TY+I V G +S ++ S P
Sbjct: 8 AIQVFDVT-AVNISATSLTLIWKVSD--NESSSNYTYKIHVAGETDS----SNLNVSEPR 60
Query: 701 LLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGPEP 741
++ L + Y++++ G P L + + P P
Sbjct: 61 AVIPGLRSSTFYNITVCPVLGDIEGT---PGFLQVHTPPVP 98
Score = 42.0 bits (98), Expect = 7e-05
Identities = 19/104 (18%), Positives = 30/104 (28%), Gaps = 16/104 (15%)
Query: 394 PSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATA 453
S+ T VN +A LTL W ++ SSS Y++ + S+ +
Sbjct: 4 GSSGAIQVFDVTAVNISATSLTLIWKVSDN-ESSSNYTYKIHVAGETDSSNLNVSEPR-- 60
Query: 454 TWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLS 497
+ L Y V + P L
Sbjct: 61 -------------AVIPGLRSSTFYNITVCPVLGDIEGTPGFLQ 91
Score = 30.4 bits (68), Expect = 0.88
Identities = 16/83 (19%), Positives = 33/83 (39%), Gaps = 5/83 (6%)
Query: 551 EVKPMTSTSVKLTWEILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHY 610
+++TS+ L W++ + + Y Y + + L V ++ GL
Sbjct: 15 TAVNISATSLTLIWKV-SDNESSSNYTYKIHVAGETDSSNLNV----SEPRAVIPGLRSS 69
Query: 611 SRYEFFLVPFFGSVDGKPSNLRA 633
+ Y + P G ++G P L+
Sbjct: 70 TFYNITVCPVLGDIEGTPGFLQV 92
>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system;
1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E
3csp_A 1py9_A
Length = 139
Score = 42.6 bits (100), Expect = 7e-05
Identities = 30/127 (23%), Positives = 47/127 (37%), Gaps = 29/127 (22%)
Query: 6 EEFRVQPKSQRVAA--GDTALLECG--PPRGHPEPTLVWKK-----------NGHPIDFE 50
+FRV + A GD A L C P + + W + NG D E
Sbjct: 5 GQFRVIGPGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAE 64
Query: 51 NSKRLR-----LVDGTN-----LAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVK- 99
+ R L + L IQ+ R +D+G Y C ++ + E A + + V+
Sbjct: 65 QAPEYRGRTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEE---AAVELKVED 121
Query: 100 PYIIRGP 106
P+ P
Sbjct: 122 PFYWINP 128
Score = 42.2 bits (99), Expect = 1e-04
Identities = 24/129 (18%), Positives = 38/129 (29%), Gaps = 39/129 (30%)
Query: 281 ASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRGEGS-----VQWWRG------- 328
V GP P+ + EA L C++ + V W+R
Sbjct: 5 GQFRVIGP---GHPI--------RALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVH 53
Query: 329 ----------EREVGSGPRVNV------TGDGSLVLTDVTKEDSGEYTCVVKSPHGSASW 372
E+ R + G +L + +V D G YTC +
Sbjct: 54 LYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEA 113
Query: 373 SASLRFESP 381
+ L+ E P
Sbjct: 114 AVELKVEDP 122
Score = 41.1 bits (96), Expect = 3e-04
Identities = 23/127 (18%), Positives = 34/127 (26%), Gaps = 41/127 (32%)
Query: 110 TVSASSIIVFECSVGGDAVL-------------TVHWKRLGSAMP--------------- 141
I VG +A L V W R +
Sbjct: 10 IGPGHPIRAL---VGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQA 66
Query: 142 ---EDRMSVLPSR------SLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVR 192
R +L +L++ +VR D G Y C + + A+ L V+ P
Sbjct: 67 PEYRGRTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVE-DPFYW 125
Query: 193 ERPSDLR 199
P R
Sbjct: 126 INPGRSR 132
>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells,
immunological receptors, immunoglobulin fold; 1.70A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D
2dli_A 2dl2_A 3h8n_A
Length = 201
Score = 43.7 bits (103), Expect = 8e-05
Identities = 29/170 (17%), Positives = 50/170 (29%), Gaps = 11/170 (6%)
Query: 8 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQD 67
P V + +T +L+C L + + + V N +I
Sbjct: 11 LLAHP-GPLVKSEETVILQCWSDVMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISR 69
Query: 68 SRKTDDGRYQC---VVKNVAGTRESTDAVLRVLVKPY---IIRGPKDTTVSASSIIVFEC 121
+ G Y+C V + +D + V++ Y + TV A + C
Sbjct: 70 MTQDLAGTYRCYGSVTHSPYQVSAPSDPLDIVIIGLYEKPSLSAQPGPTVLAGENVTLSC 129
Query: 122 SVGGDAVLTVHWKRLGSAMPEDRMSV-LPSRSLQL--SDVRLEDAGEYVC 168
S + H R G A + + + Q G Y C
Sbjct: 130 S-SRSSYDMYHLSREGEAHERRLPAGPKVNGTFQADFPLGPATHGGTYRC 178
Score = 42.2 bits (99), Expect = 2e-04
Identities = 14/88 (15%), Positives = 25/88 (28%), Gaps = 6/88 (6%)
Query: 292 PPPVILFGPANQTLPLRSEARLRCQVRGEGSVQWWRGEREVGSGPRVNVTGDG-----SL 346
P +L P + L+C E R+ +
Sbjct: 7 RKPSLLAHP-GPLVKSEETVILQCWSDVMFEHFLLHREGMFNDTLRLIGEHHDGVSKANF 65
Query: 347 VLTDVTKEDSGEYTCVVKSPHGSASWSA 374
++ +T++ +G Y C H SA
Sbjct: 66 SISRMTQDLAGTYRCYGSVTHSPYQVSA 93
Score = 33.0 bits (75), Expect = 0.30
Identities = 21/98 (21%), Positives = 28/98 (28%), Gaps = 10/98 (10%)
Query: 283 LTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRGEGSVQWWRGERE-----VGSGPR 337
+ + G L T+ L C R + E E + +GP+
Sbjct: 100 IVIIGL---YEKPSLSAQPGPTVLAGENVTLSCSSRSSYDMYHLSREGEAHERRLPAGPK 156
Query: 338 VNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSAS 375
VN T L T G Y C WS S
Sbjct: 157 VNGTFQADFPLGPAT--HGGTYRCFGSFHDSPYEWSKS 192
>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin
mucin, signaling protein; 1.95A {Mus musculus} PDB:
3kaa_A*
Length = 109
Score = 41.8 bits (98), Expect = 8e-05
Identities = 21/108 (19%), Positives = 35/108 (32%), Gaps = 23/108 (21%)
Query: 14 SQRVAAGDTALLEC--GPPRGHPEPTLVWKK---------------NGHPIDFENSKRLR 56
+V G A L C P + W K + + ++ S R +
Sbjct: 3 GYKVEVGKNAYLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSRYQ 62
Query: 57 LVDGTN-----LAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVK 99
L N L I++ D G Y C ++ G L++ +K
Sbjct: 63 LKGDLNKGDVSLIIKNVTLDDHGTYCCRIQ-FPGLMNDKKLELKLDIK 109
Score = 38.8 bits (90), Expect = 9e-04
Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 7/62 (11%)
Query: 312 RLRCQVRGEGSVQWWRGEREV--GSGPRVNVTGD-----GSLVLTDVTKEDSGEYTCVVK 364
+ C + ER V R + GD SL++ +VT +D G Y C ++
Sbjct: 33 KGFCPWSQCTNELLRTDERNVTYQKSSRYQLKGDLNKGDVSLIIKNVTLDDHGTYCCRIQ 92
Query: 365 SP 366
P
Sbjct: 93 FP 94
Score = 34.1 bits (78), Expect = 0.045
Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 152 SLQLSDVRLEDAGEYVCEAENA--VGKISASATLTVQ 186
SL + +V L+D G Y C + + L ++
Sbjct: 73 SLIIKNVTLDDHGTYCCRIQFPGLMNDKKLELKLDIK 109
>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion
molecule, virus entry receptor, STR genomics,
PSI-biology; 1.30A {Homo sapiens}
Length = 128
Score = 42.3 bits (99), Expect = 8e-05
Identities = 23/92 (25%), Positives = 27/92 (29%), Gaps = 11/92 (11%)
Query: 288 PDPNPPPVILFGPAN-QTLPLRSEARLRCQVRGEGSVQWWRGEREVGSGPRVNVTGDGSL 346
N V F P + P R E E+ D +L
Sbjct: 45 APANHQNVAAFHPKMGPSFPSPKPGSERLSFVSAKQSTGQDTEAELQ---------DATL 95
Query: 347 VLTDVTKEDSGEYTC-VVKSPHGSASWSASLR 377
L +T ED G YTC P GS LR
Sbjct: 96 ALHGLTVEDEGNYTCEFATFPKGSVRGMTWLR 127
Score = 40.4 bits (94), Expect = 4e-04
Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Query: 131 VHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDAGEYVCEAEN-AVGKISASATLTV 185
+ + + +D + L +L L + +ED G Y CE G + L V
Sbjct: 73 LSFVSAKQSTGQDTEAELQDATLALHGLTVEDEGNYTCEFATFPKGSVRGMTWLRV 128
Score = 31.1 bits (70), Expect = 0.72
Identities = 20/122 (16%), Positives = 27/122 (22%), Gaps = 37/122 (30%)
Query: 11 QPKSQRVAAGDTALLEC------------------GPPRGHPEPTLVWKKNG---HPIDF 49
R G T L C + + + P
Sbjct: 8 VLPEVRGQLGGTVELPCHLLPPVPGLYISLVTWQRPDAPANHQNVAAFHPKMGPSFPSPK 67
Query: 50 ENSKRLRLVDGTN--------------LAIQDSRKTDDGRYQCVVKNV-AGTRESTDAVL 94
S+RL V LA+ D+G Y C G+ L
Sbjct: 68 PGSERLSFVSAKQSTGQDTEAELQDATLALHGLTVEDEGNYTCEFATFPKGSVRGM-TWL 126
Query: 95 RV 96
RV
Sbjct: 127 RV 128
>1qfo_A Protein (sialoadhesin); immunoglobulin superfamily, carbohydrate
binding, immune system; HET: SIA GAL GLC; 1.85A {Mus
musculus} SCOP: b.1.1.1 PDB: 1od7_A* 1oda_A* 1od9_A*
1qfp_A 2bve_A* 1url_A*
Length = 119
Score = 41.4 bits (97), Expect = 1e-04
Identities = 17/114 (14%), Positives = 30/114 (26%), Gaps = 25/114 (21%)
Query: 11 QPKSQRVAAGDTALLEC---GPPRGHP---------------EPTLVWKKNGHPIDFENS 52
PK+ + +G L+ C P ++ + +D
Sbjct: 6 SPKNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFR 65
Query: 53 KRLRLV------DGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKP 100
R L+ L ++D + D G Y + R V V
Sbjct: 66 GRAELMGNMDHKVCN-LLLKDLKPEDSGTYNFRFEISDSNRWLDVKGTTVTVTT 118
Score = 33.7 bits (77), Expect = 0.072
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 6/42 (14%)
Query: 337 RVNVTGD-----GSLVLTDVTKEDSGEYTCVVKSPHGSASWS 373
R + G+ +L+L D+ EDSG Y + S W
Sbjct: 67 RAELMGNMDHKVCNLLLKDLKPEDSGTYNFRFEIS-DSNRWL 107
Score = 32.5 bits (74), Expect = 0.21
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 152 SLQLSDVRLEDAGEYVCEAEN 172
+L L D++ ED+G Y E
Sbjct: 80 NLLLKDLKPEDSGTYNFRFEI 100
>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel,
immunoglobulin fold, IGV domain, TIM, immune system;
2.50A {Mus musculus}
Length = 116
Score = 41.4 bits (97), Expect = 1e-04
Identities = 25/106 (23%), Positives = 39/106 (36%), Gaps = 23/106 (21%)
Query: 16 RVAAGDTALLEC----------------GPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD 59
+ G L C P + TL+W NGH + ++ S R L
Sbjct: 8 KGVVGHPVTLPCTYSTYRGITTTCWGRGQCPSSACQNTLIWT-NGHRVTYQKSSRYNLKG 66
Query: 60 GTN-----LAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKP 100
+ L I++S ++D G Y C V+ + G + VKP
Sbjct: 67 HISEGDVSLTIENSVESDSGLYCCRVE-IPGWFNDQKVTFSLQVKP 111
Score = 40.3 bits (94), Expect = 4e-04
Identities = 18/81 (22%), Positives = 23/81 (28%), Gaps = 25/81 (30%)
Query: 311 ARLRCQVRGEGS---VQWWRG-----------------EREVGSGPRVNVT-----GDGS 345
L C W RG R N+ GD S
Sbjct: 15 VTLPCTYSTYRGITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRYNLKGHISEGDVS 74
Query: 346 LVLTDVTKEDSGEYTCVVKSP 366
L + + + DSG Y C V+ P
Sbjct: 75 LTIENSVESDSGLYCCRVEIP 95
Score = 32.6 bits (74), Expect = 0.14
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 152 SLQLSDVRLEDAGEYVCEAENA--VGKISASATLTVQMAPIVR 192
SL + + D+G Y C E + +L V+ + R
Sbjct: 74 SLTIENSVESDSGLYCCRVEIPGWFNDQKVTFSLQVKPELVPR 116
>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG
BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1
b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*
Length = 457
Score = 44.5 bits (105), Expect = 2e-04
Identities = 29/166 (17%), Positives = 44/166 (26%), Gaps = 34/166 (20%)
Query: 284 TVSGPDPNPPPVILFGPA-NQTLPLRSEARLRCQVRG------EGSVQWWRGEREVGSG- 335
+ P V LF P TL + + C V E W+ EV +
Sbjct: 239 CPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAK 298
Query: 336 --PRVNVTGDGS-----LVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGF 388
PR L + + EY C V + A ++
Sbjct: 299 TKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPRE--- 355
Query: 389 FRAPEPSTYPGPPTKPTLVNQTA-----------NGLTLAWSRNNQ 423
P Y PP++ L + + + W N Q
Sbjct: 356 -----PQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQ 396
Score = 33.3 bits (76), Expect = 0.45
Identities = 29/187 (15%), Positives = 53/187 (28%), Gaps = 31/187 (16%)
Query: 282 SLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG----EGSVQWWRGEREVGSG-- 335
++ VS P V P++++ A L C V+ +V W G G
Sbjct: 122 TVIVSSASTKGPSVFPLAPSSKSTS-GGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTF 180
Query: 336 PRVNVTGDG----SLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIG---- 387
P V + S+V + + Y C V + +S +
Sbjct: 181 PAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKAEPKSCDKTHTCPPCP 240
Query: 388 ----------FFRAPEPSTYPGPPTKPTL------VNQTANGLTLAWSRNNQIGSSSLLG 431
F P+P P + V+ + W + ++
Sbjct: 241 APELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTK 300
Query: 432 YQVEMYS 438
+ E Y+
Sbjct: 301 PREEQYN 307
>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane,
phosphorylation, immunoglobulin fold, signal; 1.90A
{Rattus norvegicus} SCOP: b.1.1.1
Length = 124
Score = 41.5 bits (97), Expect = 2e-04
Identities = 25/119 (21%), Positives = 37/119 (31%), Gaps = 29/119 (24%)
Query: 10 VQPKSQRVAAGDTALLEC------------------GPPRGHPEPTLVWKKNGHPIDFEN 51
+ A G L C P G ++ G P E
Sbjct: 4 YTDREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEV 63
Query: 52 ---SKRLRLV------DGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAV-LRVLVKP 100
+R++ V DG+ + I + +D+G + C VKN T V L V K
Sbjct: 64 GTFKERIQWVGDPSWKDGS-IVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVFEKV 121
Score = 40.3 bits (94), Expect = 4e-04
Identities = 11/37 (29%), Positives = 21/37 (56%)
Query: 341 TGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLR 377
DGS+V+ ++ D+G +TC VK+P ++ +
Sbjct: 78 WKDGSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVT 114
Score = 35.3 bits (81), Expect = 0.020
Identities = 8/40 (20%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 152 SLQLSDVRLEDAGEYVCEAENA--VGKISASATLTVQMAP 189
S+ + ++ D G + C+ +N + ++ TL V
Sbjct: 82 SIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVFEKV 121
>3s98_A Interferon alpha/beta receptor 1; human, type I interferons,
receptor chain, ifnar1, fibronect III, type I interferon
receptor chain; HET: NAG; 1.90A {Homo sapiens}
Length = 306
Score = 43.4 bits (101), Expect = 2e-04
Identities = 40/342 (11%), Positives = 88/342 (25%), Gaps = 63/342 (18%)
Query: 400 PPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVA 459
P K + N L W+R++ S + + + T W++++
Sbjct: 6 SPQKVEVDIIDDN-FILRWNRSD--ESVGNVTFSFDYQ-----------KTGMDNWIKLS 51
Query: 460 ----TNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGG 515
+ L V +RA S+ + R
Sbjct: 52 GCQNITSTKCNFSSLKLNVYEEIKLRIRA-EKENTSSWYEVDSFTPFRKA---------- 100
Query: 516 KGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPMTSTSVKLTWEILNTDYIEGV 575
+ HL+ +++ + T + W + + +
Sbjct: 101 ---------------QIGPPEVHLEAEDKAIV----IHISPGTKDSVMWALDGLSFTYSL 141
Query: 576 YIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFF--GSVDGKPSNLRA 633
I+ + S + L+ + Y + G S +
Sbjct: 142 VIWKNSSG-------VEERIENIYSRHKIYKLSPETTYCLKVKAALLTSWKIGVYSPVHC 194
Query: 634 VRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMT 693
++T E P V + + +LKW V + + N
Sbjct: 195 IKT-TVENELPPPENIEVSVQNQNYVLKWDYTYANMTFQVQWLHAFLKRNPGNHLYKWKQ 253
Query: 694 VSA-----STPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRP 730
+ +T + N+ Y + + A++ T +S
Sbjct: 254 IPDCENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFWSEE 295
>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain,
glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens}
PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A
1f6a_B 1g84_A
Length = 323
Score = 43.1 bits (101), Expect = 3e-04
Identities = 42/293 (14%), Positives = 72/293 (24%), Gaps = 40/293 (13%)
Query: 106 PKDTTVSASSIIVFECSVGG--DAVLTVHWKRLGSAMPEDRMSVLPSRS---------LQ 154
D I C V G + + W G M D + ++ L
Sbjct: 16 SCDGGGHFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELT 75
Query: 155 LSDVRLEDAGEYVCEAENAVGKISASATLTVQMAP----IVRERPSDLRLEVGRDAVFLC 210
LS Y C+ S P RPS L + + C
Sbjct: 76 LSQKHWLSDRTYTCQVTYQGHTFEDSTKKCADSNPRGVSAYLSRPSPFDLFIRKSPTITC 135
Query: 211 GIEGSPPPSTF----WMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAP--L 264
+ P W + P + + + + + + V
Sbjct: 136 LVVDLAPSKGTVQLTWSRASGK----PVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGE 191
Query: 265 IILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG----E 320
C + S T + P V F R + L C ++ +
Sbjct: 192 TYQCRVTHPHLPRALMRSTTKTSGPRAAPEVYAFATPEWPG-SRDKRTLACLIQNFMPED 250
Query: 321 GSVQWWRGEREVGSGPRVNVT----GDGSLVLT---DVTKED--SGE-YTCVV 363
SVQW E ++ + +VT+ + + + C
Sbjct: 251 ISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRA 303
Score = 38.5 bits (89), Expect = 0.008
Identities = 26/192 (13%), Positives = 45/192 (23%), Gaps = 40/192 (20%)
Query: 289 DPNPPPVILFGP-ANQTLPLRSEARLRCQVRG----EGSVQWWRGEREVGSGPRVNVTGD 343
D PP V + + +L C V G + W + + T
Sbjct: 4 DFTPPTVKILQSSCDGGGHFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQ 63
Query: 344 GS--------LVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPS 395
L L+ YTC V + FE T +
Sbjct: 64 EGELASTQSELTLSQKHWLSDRTYTCQVTYQGHT--------FEDSTKKCADSNPRGVSA 115
Query: 396 TYPGPPTKPTLVNQTAN-------------GLTLAWSRNNQIGSSSLLGYQVEMYSRPLP 442
P + ++ + L WSR + + + +
Sbjct: 116 YLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHSTRKEEKQ------ 169
Query: 443 SSSPSGDTATAT 454
+ T+T
Sbjct: 170 RNGTLTVTSTLP 181
>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta
barrel, immunoglobulin fold, IGV domain, TIM, immune
system; 1.50A {Mus musculus}
Length = 115
Score = 40.0 bits (93), Expect = 4e-04
Identities = 21/110 (19%), Positives = 37/110 (33%), Gaps = 22/110 (20%)
Query: 12 PKSQRVAAGDTALLECG-PPRGHPEPTLVWKK---------------NGHPIDFENSKRL 55
+ + AG L C + W NG+ + + + R
Sbjct: 4 HTAVQGLAGHPVTLPCIYSTHLGGIVPMCWGLGECRHSYCIRSLIWTNGYTVTHQRNSRY 63
Query: 56 RLVDGTN-----LAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKP 100
+L + L I+++ D G Y CVV+ + G D +L V +
Sbjct: 64 QLKGNISEGNVSLTIENTVVGDGGPYCCVVE-IPGAFHFVDYMLEVKPEL 112
Score = 35.7 bits (82), Expect = 0.013
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 342 GDGSLVLTDVTKEDSGEYTCVVKSP 366
G+ SL + + D G Y CVV+ P
Sbjct: 72 GNVSLTIENTVVGDGGPYCCVVEIP 96
Score = 31.1 bits (70), Expect = 0.60
Identities = 10/41 (24%), Positives = 15/41 (36%)
Query: 152 SLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVR 192
SL + + + D G Y C E L V+ + R
Sbjct: 75 SLTIENTVVGDGGPYCCVVEIPGAFHFVDYMLEVKPELVPR 115
>2csp_A RIM-BP2, RIM binding protein 2; FN3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 130
Score = 40.5 bits (94), Expect = 4e-04
Identities = 25/113 (22%), Positives = 43/113 (38%), Gaps = 7/113 (6%)
Query: 627 KPSNLRAVRTLECEPSGVPQ-LTDPVLLNATSVLLKWKPP---PVGTHNGV-IRTYQIIV 681
S+ TL P PQ +T + ++ + W+PP P G NG + Y +
Sbjct: 3 SGSSGVEFSTLPAGPPAPPQDVTVQAGVTPATIRVSWRPPVLTPTGLSNGANVTGYGVYA 62
Query: 682 GGGNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLS 734
G + +I T A + + L L + V++ + G S A +
Sbjct: 63 KGQRVAEVIFPT--ADSTAVELVRLRSLEAKGVTVRTLSAQGESVDSAVAAVP 113
>3lqm_A Interleukin-10 receptor subunit beta; IL-10R2, common chain,
cytokine, IL-10, IL-22, IL- 28, IL-29, disulfide bond,
glycoprotein, membrane; 2.14A {Homo sapiens}
Length = 201
Score = 41.6 bits (97), Expect = 5e-04
Identities = 18/135 (13%), Positives = 36/135 (26%), Gaps = 11/135 (8%)
Query: 604 VTGLAHYSRYEFFLVPFFGSVDGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWK 663
+ L+ Y + + F + + G P + VL + +
Sbjct: 57 FSSLSKYGDHTLRVRAEFADEHSDWVQITFSPVDDTII-GPPGMQVEVLADCLHMRFLAP 115
Query: 664 PPPVGTHNGVIR------TYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRYSVSLA 717
++ TY + ++ +L NL Y V +
Sbjct: 116 KIENEYETWTMKNVYNSWTYNVQYW--KQGTDEKFQITPQYDFEVLRNLEPWTTYCVQVR 173
Query: 718 A--TNRAGTGPYSRP 730
+R G +S P
Sbjct: 174 GFLPDRNKAGEWSEP 188
Score = 30.1 bits (67), Expect = 2.5
Identities = 6/44 (13%), Positives = 14/44 (31%)
Query: 454 TWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLS 497
+ ++L+ +T VRA + S ++
Sbjct: 42 IFQDKCMQTTLTECDFSSLSKYGDHTLRVRAEFADEHSDWVQIT 85
>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell,
HLA, major histocompatibility complex class I (MHC class
I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 257
Score = 41.9 bits (98), Expect = 6e-04
Identities = 12/88 (13%), Positives = 24/88 (27%), Gaps = 6/88 (6%)
Query: 292 PPPVILFGPANQTLPLRSEARLRCQVRGEGSVQWWRGEREVGSGPRV-----NVTGDGSL 346
P +L P + L+C E + + + +
Sbjct: 6 RKPSLLAHP-GPLVKSEETVILQCWSDVRFQHFLLHREGKFKDTLHLIGEHHDGVSKANF 64
Query: 347 VLTDVTKEDSGEYTCVVKSPHGSASWSA 374
+ + ++ +G Y C H SA
Sbjct: 65 SIGPMMQDLAGTYRCYGSVTHSPYQLSA 92
Score = 41.1 bits (96), Expect = 8e-04
Identities = 29/170 (17%), Positives = 48/170 (28%), Gaps = 11/170 (6%)
Query: 10 VQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSR 69
P V + +T +L+C L + + V N +I
Sbjct: 12 AHP-GPLVKSEETVILQCWSDVRFQHFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMM 70
Query: 70 KTDDGRYQC---VVKNVAGTRESTDAVLRVLVKPYI---IRGPKDTTVSASSIIVFECSV 123
+ G Y+C V + +D + V+ Y + TV A + CS
Sbjct: 71 QDLAGTYRCYGSVTHSPYQLSAPSDPLDIVITGLYEKPSLSAQPGPTVLAGESVTLSCS- 129
Query: 124 GGDAVLTVHWKRLGSAMPEDRMSV-LPSRSLQ--LSDVRLEDAGEYVCEA 170
+ H R G A + + + Q G Y C
Sbjct: 130 SRSSYDMYHLSREGEAHERRFSAGPKVNGTFQADFPLGPATHGGTYRCFG 179
Score = 30.7 bits (69), Expect = 1.8
Identities = 22/98 (22%), Positives = 28/98 (28%), Gaps = 8/98 (8%)
Query: 283 LTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRGEGSVQWWRGEREVG-----SGPR 337
L + P + P T+ L C R + E E +GP+
Sbjct: 97 LDIVITGLYEKPSLSAQP-GPTVLAGESVTLSCSSRSSYDMYHLSREGEAHERRFSAGPK 155
Query: 338 VNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSAS 375
VN T L T G Y C WS S
Sbjct: 156 VNGTFQADFPLGPAT--HGGTYRCFGSFRDSPYEWSNS 191
>1cd9_B G-CSF-R, protein (G-CSF receptor); class1 cytokine, hematopoietic
receptor, signal transduction cytokine; HET: NAG; 2.80A
{Mus musculus} SCOP: b.1.2.1 b.1.2.1 PDB: 1pgr_B 1cto_A
1gcf_A
Length = 215
Score = 41.3 bits (96), Expect = 7e-04
Identities = 23/146 (15%), Positives = 38/146 (26%), Gaps = 15/146 (10%)
Query: 358 EYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGLTLA 417
V++ + S + P + EP P +V+ L L+
Sbjct: 80 YMAIWVQAENMLGSSESPKLCLDPMDVVK-----LEPPMLQALDIGPDVVSHQPGCLWLS 134
Query: 418 WSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVGLT 477
W ++ + A T V + L
Sbjct: 135 WKPWKPSEYMEQE-CELRYQPQ--------LKGANWTLVFH-LPSSKDQFELCGLHQAPV 184
Query: 478 YTFLVRALNSHGLSAPSPLSDEIVLR 503
YT +R + S SP S + LR
Sbjct: 185 YTLQMRCIRSSLPGFWSPWSPGLQLR 210
Score = 39.8 bits (92), Expect = 0.002
Identities = 29/186 (15%), Positives = 55/186 (29%), Gaps = 15/186 (8%)
Query: 556 TSTSVKLTWEI-----LNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASG-FLVTGLAH 609
T+ S+ WE L T +I + V + + L
Sbjct: 18 TTNSLVCQWEPGPETHLPTSFILKSFRSRADCQYQGDTIPDCVAKKRQNNCSIPRKNLLL 77
Query: 610 YSRYEFFLVPF--FGSVDGKPSNLRAVRTLECEPSGVPQLT---DPVLLNATSVLLKWKP 664
Y ++ GS + L + ++ EP + L D V + L WKP
Sbjct: 78 YQYMAIWVQAENMLGSSESPKLCLDPMDVVKLEPPMLQALDIGPDVVSHQPGCLWLSWKP 137
Query: 665 PPVGTHNGVIRTYQIIVGGGNNSA--LINMTVSASTPTLLLTNLSAGIRYSVSLAATNRA 722
+ + ++ A + + +S L L Y++ + +
Sbjct: 138 WK--PSEYMEQECELRYQPQLKGANWTLVFHLPSSKDQFELCGLHQAPVYTLQMRCIRSS 195
Query: 723 GTGPYS 728
G +S
Sbjct: 196 LPGFWS 201
>3ov6_A Beta-2-microglobulin, T-cell surface glycoprotein cell surface
glycoprotein CD1B; MHC, immunoglobulin domain, immune
system, antigen presentat; HET: NAG D12 MK0; 2.50A {Homo
sapiens}
Length = 397
Score = 41.9 bits (99), Expect = 8e-04
Identities = 17/124 (13%), Positives = 35/124 (28%), Gaps = 13/124 (10%)
Query: 292 PPPVILFGPANQTLPLRSEARLRCQVRG----EGSVQWWRGEREVGSGPRVNV--TGDGS 345
P + ++ L C V G + V + + ++ + D S
Sbjct: 7 TPKIQVYS--RHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWS 64
Query: 346 ---LVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPT 402
L T+ T + EY C V H + S ++++ +
Sbjct: 65 FYLLYYTEFTPTEKDEYACRVN--HVTLSQPKIVKWDRDMGGGGSGGSGSGGGSSADASQ 122
Query: 403 KPTL 406
+
Sbjct: 123 EHVS 126
Score = 33.1 bits (76), Expect = 0.41
Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 9/64 (14%)
Query: 310 EARLRCQVRG----EGSVQWWRGEREVGSGPRVNV--TGDGSL---VLTDVTKEDSGEYT 360
+L C V G V W RGE+E ++ G+ DV ++ +
Sbjct: 319 RLQLVCHVSGFYPKPVWVMWMRGEQEQQGTQLGDILPNAQGTWYLRATLDVADGEAAGLS 378
Query: 361 CVVK 364
C VK
Sbjct: 379 CRVK 382
>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB,
immune system/cytokine complex; 1.90A {Homo sapiens}
SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A*
1f42_A* 1f45_A* 3hmx_A* 3qwr_A*
Length = 306
Score = 41.3 bits (95), Expect = 0.001
Identities = 39/320 (12%), Positives = 81/320 (25%), Gaps = 32/320 (10%)
Query: 189 PIVRERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDG 248
+ G V C + W L+ + ++ G + IQ + D
Sbjct: 7 DVYVVELDWYPDAPGEMVVLTC--DTPEEDGITWTLDQSSEVLGSGKTL-TIQVKEFGDA 63
Query: 249 MNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLR 308
+ + L++L + + +P + N +
Sbjct: 64 GQYTCHKGGEVLSHSLLLLHKKE----DGIWSTDILKDQKEPKNKTFLRCEAKNYSGRFT 119
Query: 309 SEARLRCQVRGEGSVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHG 368
SV+ RG + T V KE C S
Sbjct: 120 CWWLTTISTDLTFSVKSSRGSSDPQGVTCGAATLSAERV-RGDNKEYEYSVECQEDSACP 178
Query: 369 SASWSASLRFESPTNPNIGFFRAPEPSTY-----PGPPTKPTLVN-QTANGLTLAWSRN- 421
+A S + + + + P PP L + + + ++W
Sbjct: 179 AAEESLPIEVMVDAVHKLKYEQYTSSFFIRDIIKPDPPKNLQLKPLKNSRQVEVSWEYPD 238
Query: 422 --NQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVGLTYT 479
+ S L + V++ + + + T + +
Sbjct: 239 TWSTPHSYFSLTFCVQVQGK-----------SKREK----KDRVFTDKTSATVICRKNAS 283
Query: 480 FLVRALNSHGLSAPSPLSDE 499
VRA + + S+ S +
Sbjct: 284 ISVRAQDRYYSSSWSEWASV 303
Score = 39.3 bits (90), Expect = 0.004
Identities = 21/133 (15%), Positives = 33/133 (24%), Gaps = 14/133 (10%)
Query: 2 SLLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGT 61
L ++ + V+ A G+ +L C E + W + L G
Sbjct: 3 ELKKDVYVVELDWYPDAPGEMVVLTCD---TPEEDGITWTLDQ--------SSEVLGSGK 51
Query: 62 NLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSASSIIVFEC 121
L IQ D G+Y C + +L + C
Sbjct: 52 TLTIQVKEFGDAGQYTCHKGG--EVLSHSLLLLHKKEDGIWSTDILKDQKEPKNKTFLRC 109
Query: 122 SV-GGDAVLTVHW 133
T W
Sbjct: 110 EAKNYSGRFTCWW 122
Score = 36.2 bits (82), Expect = 0.043
Identities = 28/168 (16%), Positives = 39/168 (23%), Gaps = 15/168 (8%)
Query: 293 PPVILFGPANQTLPLRSEARLRCQVRGEGSVQW-WRGEREV-GSGPRVNVTGDGSLVLTD 350
V + L C E + W EV GSG L +
Sbjct: 6 KDVYVVELDWYPDAPGEMVVLTCDTPEEDGITWTLDQSSEVLGSGKT--------LTIQV 57
Query: 351 VTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQT 410
D+G+YTC S S + E EP
Sbjct: 58 KEFGDAGQYTCHKGGEVLSHSLLLLHKKEDGIWSTDILKDQKEP---KNKTFLRCEAKNY 114
Query: 411 ANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRV 458
+ T W + + S + T +A VR
Sbjct: 115 SGRFTCWWLTTIS--TDLTFSVKSSRGSSDPQGVTCGAATLSAERVRG 160
Score = 30.9 bits (68), Expect = 2.1
Identities = 17/90 (18%), Positives = 33/90 (36%), Gaps = 6/90 (6%)
Query: 641 PSGVPQLTDPVLLNATSVLLKWKPPPVGT--HNGVIRTYQIIVGGGNNSALINMTVSAST 698
P L L N+ V + W+ P + H+ T+ + V G + + + T
Sbjct: 213 PDPPKNLQLKPLKNSRQVEVSWEYPDTWSTPHSYFSLTFCVQVQGKSKREKKDRVFTDKT 272
Query: 699 PTLLLTNLSAGIRYSVSLAATNRAGTGPYS 728
+ S+S+ A +R + +S
Sbjct: 273 ----SATVICRKNASISVRAQDRYYSSSWS 298
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal
regulatory protein alpha, immunoglobulin superfamily,
phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Length = 327
Score = 41.1 bits (96), Expect = 0.001
Identities = 40/254 (15%), Positives = 81/254 (31%), Gaps = 38/254 (14%)
Query: 11 QPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHP-----IDFENSKRLRLVDGTN--- 62
KS VAAG++A+L C P + W + P + + R+ +
Sbjct: 9 PDKSVSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTK 68
Query: 63 -------LAIQDSRKTDDGRYQCVV------KNVAGTRESTDAVLRVLVKPYIIRGPKDT 109
++I + D G Y CV + T+ +R ++ GP
Sbjct: 69 RENMDFSISISNITPADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAAR 128
Query: 110 TVSASSIIVFECSVGG--DAVLTVHWKRLGSAMPEDRMSVLPSRS---------LQLSDV 158
++ C G +T+ W + G+ + + + +V P ++
Sbjct: 129 ATPQHTVSF-TCESHGFSPRDITLKWFKNGNELSDFQTNVDPVGESVSYSIHSTAKVVLT 187
Query: 159 RLEDAGEYVCEAENA---VGKISASATLTVQMAPIVRERPSDLRLEVGRDAVFLCGIEG- 214
R + + +CE + + +A L+ + + + C +
Sbjct: 188 REDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTLEVTQQPVRAENQVNVTCQVRKF 247
Query: 215 SPPPSTF-WMLEGN 227
P W+ GN
Sbjct: 248 YPQRLQLTWLENGN 261
Score = 40.7 bits (95), Expect = 0.002
Identities = 29/159 (18%), Positives = 46/159 (28%), Gaps = 37/159 (23%)
Query: 311 ARLRCQVRG---EGSVQWWRG------------EREVGSGPRVNVTGDGS-----LVLTD 350
A L C V G +QW+RG E V+ + + +++
Sbjct: 21 AILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISN 80
Query: 351 VTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQT 410
+T D+G Y CV S + + T + RA + P T
Sbjct: 81 ITPADAGTYYCVK---FRKGSPDTEFKSGAGTELS---VRAKPSAPVVSGPAARATPQHT 134
Query: 411 AN-----------GLTLAWSRNNQIGSSSLLGYQVEMYS 438
+ +TL W +N S S
Sbjct: 135 VSFTCESHGFSPRDITLKWFKNGNELSDFQTNVDPVGES 173
Score = 39.9 bits (93), Expect = 0.003
Identities = 20/167 (11%), Positives = 42/167 (25%), Gaps = 33/167 (19%)
Query: 284 TVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG----EGSVQWWRGEREVGSGPR-- 337
T P ++ GPA + P + C+ G + +++W++ E+
Sbjct: 109 TELSVRAKPSAPVVSGPAARATP-QHTVSFTCESHGFSPRDITLKWFKNGNELSDFQTNV 167
Query: 338 ------VNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRA 391
V+ + + + ++ + C V P
Sbjct: 168 DPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQG---------DPLRGTANLSET 218
Query: 392 PEPSTYPGPPTKPTLVNQTAN-----------GLTLAWSRNNQIGSS 427
+P N L L W N + +
Sbjct: 219 IRVPPTLEVTQQPVRAENQVNVTCQVRKFYPQRLQLTWLENGNVSRT 265
Score = 38.8 bits (90), Expect = 0.007
Identities = 46/256 (17%), Positives = 75/256 (29%), Gaps = 27/256 (10%)
Query: 152 SLQLSDVRLEDAGEYVC-----EAENAVGKISASATLTVQMAPIVRE-RPSDLRLEVGRD 205
S+ +S++ DAG Y C + + K A L+V+ P R
Sbjct: 75 SISISNITPADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAARATPQHT 134
Query: 206 AVFLCGIEG-SPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPL 264
F C G SP T + L VD + ++ + K+
Sbjct: 135 VSFTCESHGFSPRDITLKWFKNGNELSDFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQ 194
Query: 265 IILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG----E 320
+I C V T + + P L Q + ++ + CQVR
Sbjct: 195 VI-C-EVAHVTLQGDPLRGTANLSETIRVPPTLE-VTQQPVRAENQVNVTCQVRKFYPQR 251
Query: 321 GSVQWWRGEREVGSG--PRVNVTGDGS------LVLTDVTKEDSGEYTCVV-----KSPH 367
+ W + V DG+ L++ D + TC V +
Sbjct: 252 LQLTWLENGNVSRTETASTVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQVEHDGQPAVS 311
Query: 368 GSASWSASLRFESPTN 383
S S R +
Sbjct: 312 KSHDLKVSTRHHHHHH 327
>3s6c_A Beta-2-microglobulin, T-cell surface glycoprotein
membrane-associated; MHC, immunoglobulin domain, immune
system, antigen presentat glycosylation; HET: NAG FUC;
2.90A {Homo sapiens}
Length = 392
Score = 41.2 bits (97), Expect = 0.001
Identities = 17/117 (14%), Positives = 36/117 (30%), Gaps = 14/117 (11%)
Query: 292 PPPVILFGPANQTLPLRSEARLRCQVRG----EGSVQWWRGEREVGSGPRVNV--TGDGS 345
P + ++ + L C V G + V + + ++ + D S
Sbjct: 4 TPKIQVY--SRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWS 61
Query: 346 ---LVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPG 399
L T+ T + EY C V H + S ++++ + +
Sbjct: 62 FYLLYYTEFTPTEKDEYACRVN--HVTLSQPKIVKWD-RDMDDDDKGSSSSDDDDKE 115
Score = 35.8 bits (83), Expect = 0.057
Identities = 19/68 (27%), Positives = 26/68 (38%), Gaps = 9/68 (13%)
Query: 306 PLRSEARLRCQVRG----EGSVQWWRGEREVGSGPRVNV--TGDGSL---VLTDVTKEDS 356
P +L C V G V W RGE+E R +V D + DV ++
Sbjct: 304 PGPGRLQLVCHVSGFYPKPVWVMWMRGEQEQRGTQRGDVLPNADETWYLRATLDVAAGEA 363
Query: 357 GEYTCVVK 364
+C VK
Sbjct: 364 AGLSCRVK 371
>3qt2_A Interleukin-5 receptor subunit alpha; cytokine type I receptor
fold, fibronectin type III modules, helical bundle,
cytokine, ligand-receptor complex; HET: BGC; 2.55A {Homo
sapiens}
Length = 317
Score = 41.0 bits (95), Expect = 0.001
Identities = 48/347 (13%), Positives = 93/347 (26%), Gaps = 55/347 (15%)
Query: 391 APEPSTYPGPPTKPTLVNQTANGLTLAWSRN-NQIGSSSLLGYQVEMYSRPLPSSSPSGD 449
P+ PP T+ + L W N +Q + L YQV++ +
Sbjct: 5 LPDEKISLLPPVNFTIKVTGLAQVLLQWKPNPDQEQRNVNLEYQVKINA----------- 53
Query: 450 TATATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEG 509
+ T VT L +G + + N H L A S S E+
Sbjct: 54 PKEDDYETRITES----KAVTILHMGFSASVRTILQNDHSLLASSWASAEL--------- 100
Query: 510 IFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPMTSTSVKLTWEILNT 569
G + + +L + + S+ TW +
Sbjct: 101 -------------HAPPGSPGT---SIVNLTCTTNTTEDNYSRLRSYQVSLHCTWMVGTD 144
Query: 570 DYIEGVY-IYSRGLDPPASVAMLTVLHAGEASG---FLVTGLAHYSRYEFFLVPFFGSVD 625
+ Y +Y R ++ G L+ + LV
Sbjct: 145 APEDTQYFLYYRYGSWTEECQEYSMDTLGRNIACWFPRTFILSKGRDWLAVLVNGSSKHS 204
Query: 626 GKPSNLRAVRTLECEPSGVPQ-LTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGG 684
+ + P +T + T + ++W+ P Y++ +
Sbjct: 205 AIRPFDQLFALHAIDQINPPLNVT--AEIEGTRMSIQWEKPV-SAFPIHCFDYEVKIHNT 261
Query: 685 NNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNR---AGTGPYS 728
N + + ++ + +Y V + A G +S
Sbjct: 262 RNG---YLQIEKLMTNAFISIIDDLSKYDVQVRAAVSSMCREAGLWS 305
Score = 34.1 bits (77), Expect = 0.20
Identities = 29/245 (11%), Positives = 56/245 (22%), Gaps = 33/245 (13%)
Query: 266 ILCLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRGEGSVQW 325
IL + S A A L P V L +E + S+
Sbjct: 83 ILQNDHSLLASSWASAELHAPPGSPGTSIVNL-----TCTTNTTEDNYSRLRSYQVSLHC 137
Query: 326 -WRGEREVGSGPRVNVT----GDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRF-- 378
W + + + C + L
Sbjct: 138 TWMVGTDAPEDTQYFLYYRYGSWTEECQEYSMDTLGRNIACWFPRTFILSKGRDWLAVLV 197
Query: 379 -----ESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQ 433
S P F PP T +++ W + Y+
Sbjct: 198 NGSSKHSAIRPFDQLFA-LHAIDQINPPLNVT-AEIEGTRMSIQWEKPVSAFPIHCFDYE 255
Query: 434 VEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAP 493
V++++ ++++ + + ++ + Y VRA S
Sbjct: 256 VKIHNT------------RNGYLQIEKLMTN--AFISIIDDLSKYDVQVRAAVSSMCREA 301
Query: 494 SPLSD 498
S+
Sbjct: 302 GLWSE 306
>2b5i_C Cytokine receptor common gamma chain; four-helix bundle,
fibronectin domain, cytokine-cytokine REC complex; HET:
NAG; 2.30A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB:
3bpl_C* 3qb7_C* 3qaz_C*
Length = 199
Score = 40.1 bits (93), Expect = 0.001
Identities = 19/152 (12%), Positives = 44/152 (28%), Gaps = 17/152 (11%)
Query: 349 TDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTY--PGPPTKPTL 406
+ + C ++ + ++ + P P + + P P TL
Sbjct: 48 SHYLFSEEITSGCQLQKKEIHLYQTFVVQLQDPREPRRQATQMLKLQNLVIPWAPENLTL 107
Query: 407 VNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPI 466
+ + L L W+ + L + V+ Y +
Sbjct: 108 HKLSESQLELNWNNRF---LNHCLEHLVQ-YRTD-----------WDHSWTEQSVDYRHK 152
Query: 467 LTVTNLTVGLTYTFLVRALNSHGLSAPSPLSD 498
++ ++ YTF VR+ + + S+
Sbjct: 153 FSLPSVDGQKRYTFRVRSRFNPLCGSAQHWSE 184
>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune
system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A
Length = 110
Score = 38.3 bits (89), Expect = 0.002
Identities = 14/86 (16%), Positives = 26/86 (30%), Gaps = 25/86 (29%)
Query: 309 SEARLRCQVRGEGSVQ------WWRGERE-----VGSGP------------RVN-VTGDG 344
A L CQ + +W+ + V G R + +
Sbjct: 10 ETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSW 69
Query: 345 SLVLTDVTKEDSGEYTCVV-KSPHGS 369
+L L ++ +D G Y C++
Sbjct: 70 TLRLHNLQIKDKGLYQCIIHHKKPTG 95
Score = 33.7 bits (77), Expect = 0.065
Identities = 13/79 (16%), Positives = 22/79 (27%), Gaps = 33/79 (41%)
Query: 123 VGGDAVL---------------TVHWKR---------------LGSAMPE--DRMSVLPS 150
A L V W+ S + R S
Sbjct: 8 FNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSD 67
Query: 151 R-SLQLSDVRLEDAGEYVC 168
+L+L +++++D G Y C
Sbjct: 68 SWTLRLHNLQIKDKGLYQC 86
Score = 29.4 bits (66), Expect = 1.7
Identities = 14/80 (17%), Positives = 26/80 (32%), Gaps = 19/80 (23%)
Query: 20 GDTALLEC--GPPRGHPEPTLV--WKKNGHP--------------IDFENSKRLRLVDGT 61
+TA L C + LV W+ + + + R +
Sbjct: 9 NETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDS 68
Query: 62 -NLAIQDSRKTDDGRYQCVV 80
L + + + D G YQC++
Sbjct: 69 WTLRLHNLQIKDKGLYQCII 88
>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN;
1.75A {Gallus gallus}
Length = 231
Score = 40.0 bits (93), Expect = 0.002
Identities = 29/168 (17%), Positives = 50/168 (29%), Gaps = 34/168 (20%)
Query: 286 SGPDPNPPPVILFGPANQTLPLRSEARLRCQVRGEGS-----VQWWRGEREVGSGP---- 336
+P + P+ L + +A+LRC V S V W R +
Sbjct: 6 GAQSCSPIQLYAIPPSPGELYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPMVL 65
Query: 337 --RVNVTGDGSLVLTDVTKEDSG---EYTCVVKSPHGSASWSASLRFESPTNPNIGFFRA 391
N T S + V+ +D +TC V+ S S+ +
Sbjct: 66 QEHFNGTYSASSAVP-VSTQDWLSGERFTCTVQHEELPLPLSKSVYRNTGPTTP------ 118
Query: 392 PEPSTYPGPPTKPTLVNQTAN-----------GLTLAWSRNNQIGSSS 428
P YP P L + + W R+++ ++
Sbjct: 119 --PLIYPFAPHPEELSLSRVTLSCLVRGFRPRDIEIRWLRDHRAVPAT 164
>2jtd_A Myomesin-1, skelemin; immunoglobulin domain, muscle protein, thick
filament, immune system, cell adhesion; NMR {Mus
musculus}
Length = 142
Score = 38.1 bits (88), Expect = 0.003
Identities = 20/93 (21%), Positives = 38/93 (40%), Gaps = 20/93 (21%)
Query: 302 NQTLPLRSEARLRCQVRGE-------------GSVQWWRGEREVGSGPRVNV-----TGD 343
T+P +SE + +G+ V + E+E+ GP+ + TG
Sbjct: 36 FPTVPTKSELAVEILEKGQVRFWMQAEKLSSNAKVSYIFNEKEIFEGPKYKMHIDRNTGI 95
Query: 344 GSLVLTDVTKEDSGEYTCVVKSPHGSASWSASL 376
+ + + ED G YT ++ G A+ ++L
Sbjct: 96 IEMFMEKLQDEDEGTYTFQIQD--GKATGHSTL 126
>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C
region, hinge region, immunoglobulin; HET: NAG FUL NDG
BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1
b.1.1.2 b.1.1.2 b.1.1.2
Length = 434
Score = 39.9 bits (93), Expect = 0.003
Identities = 26/170 (15%), Positives = 43/170 (25%), Gaps = 34/170 (20%)
Query: 284 TVSGPDPNPPPVILFGPA-NQTLPLRSEARLRCQVRG------EGSVQWWRGEREVGSGP 336
P V +F P TL + ++ C V E W+ EV +
Sbjct: 220 PCICTVPEVSSVFIFPPKPKDTLLITVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHTAQ 279
Query: 337 RVNVTGDG--------SLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGF 388
+L + + E+ C V S A ++
Sbjct: 280 TQPREEQFNSTFRVVSALPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGK------ 333
Query: 389 FRAPEPSTYPGPPTKPTLVNQTA-----------NGLTLAWSRNNQIGSS 427
P Y PP K + +T+ W + Q +
Sbjct: 334 --PRAPQVYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQSDGQAPEN 381
>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology,
X-RAY solution scattering, constrained modelling, immune
system; NMR {Homo sapiens}
Length = 523
Score = 39.8 bits (93), Expect = 0.004
Identities = 29/144 (20%), Positives = 50/144 (34%), Gaps = 22/144 (15%)
Query: 282 SLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG----EGSVQWWRGEREVGSG-- 335
+TV G P V LF P+++ L ++A L C + +V W V +G
Sbjct: 104 KVTVLGQPKANPTVTLFPPSSEELQ-ANKATLVCLISDFYPGAVTVAWKADGSPVKAGVE 162
Query: 336 --PRVNVTGDG-----SLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGF 388
+ + L LT + Y+C V H ++ ++ +
Sbjct: 163 TTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVT--HEGSTVEKTVAPTECSAS---- 216
Query: 389 FRAPEPSTYPGPPTKPTLVNQTAN 412
PS +P P+ + TA
Sbjct: 217 --TKGPSVFPLAPSSKSTSGGTAA 238
Score = 37.1 bits (86), Expect = 0.031
Identities = 64/340 (18%), Positives = 104/340 (30%), Gaps = 64/340 (18%)
Query: 129 LTVHWKRLGSAMPEDRMSVLPSR----------SLQLSDVRLEDAGEYVCEAENAVGKIS 178
+TV WK GS + + PS+ L L+ + + Y C+ + +
Sbjct: 146 VTVAWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVE 205
Query: 179 ASATLTVQMA----PIVRERPSDLRLEVGRDAVFLCGIEG-SPPPSTF-WMLEGNRSLIY 232
+ T A P V + G A C ++ P P T W N +
Sbjct: 206 KTVAPTECSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPQPVTVSW----NSGALT 261
Query: 233 PGDRVDNIQAEITSDGMNLLKIQNVSRTAAPL---IILCLGVNAAGSDLARASLTVSGPD 289
G V A + S G+ L V+ ++ L +C VN S+ +
Sbjct: 262 SG--VHTFPAVLQSSGLYSL-SSVVTVPSSSLGTQTYICN-VNHKPSNT---KVDKRVEP 314
Query: 290 PNPPPVILFGP-ANQTLPLRSEARLRCQVRG------EGSVQWWRGEREVGSG---PRVN 339
+ P V LF P TL + + C V + W+ +V + PR
Sbjct: 315 LSLPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPQVKFNWYVDGVQVHNAKTKPREQ 374
Query: 340 VTGD-----GSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEP 394
L + D EY C V + A ++ EP
Sbjct: 375 QYNSTYRVVSVLTVLHQNWLDGKEYKCKVSNKALPAPIEKTISKAKGQ--------PREP 426
Query: 395 STYPGPPTKPTLVNQTAN-----------GLTLAWSRNNQ 423
Y PP++ + + + + W N Q
Sbjct: 427 QVYTLPPSREEMTKNQVSLTCLVKGFYPSDIAVEWESNGQ 466
Score = 32.1 bits (73), Expect = 0.94
Identities = 21/133 (15%), Positives = 39/133 (29%), Gaps = 30/133 (22%)
Query: 337 RVNVTGDGS---LVLTDVTKEDSGEYTCVVK-SPHGSASWSASLRFESPTNPNIGFFRAP 392
R + + G+ L ++ + ED +Y C S S + + P
Sbjct: 60 RFSGSKSGTSASLAISGLEAEDESDYYCASWNSSDNSYVFGTGTKVTVLGQP------KA 113
Query: 393 EPSTYPGPPTKPTLVNQTA-----------NGLTLAWSRNNQIGSSSLLGYQVEMYSRPL 441
P+ PP+ L A +T+AW + + +
Sbjct: 114 NPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETT--------- 164
Query: 442 PSSSPSGDTATAT 454
S S + A+
Sbjct: 165 KPSKQSNNKYAAS 177
>1pfc_A IGG1 PFC' FC; immunoglobulin; 3.12A {Cavia porcellus} SCOP: b.1.1.2
Length = 113
Score = 37.3 bits (87), Expect = 0.004
Identities = 22/93 (23%), Positives = 35/93 (37%), Gaps = 11/93 (11%)
Query: 281 ASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG----EGSVQWWRGEREVGSGP 336
+++ + P P V L P L + + L C + G + +V+W E
Sbjct: 3 RTISKAKGPPRIPEVYLLPPPRNELS-KKKVSLTCMITGFYPADINVEWDSSEPSDYKNT 61
Query: 337 RVNVTGDGSLVLT---DVTKED--SGE-YTCVV 363
DGS L V + +GE +TC V
Sbjct: 62 PPVFDTDGSFFLYSRLKVDTDAWNNGESFTCSV 94
>4doh_R Interleukin-20 receptor subunit alpha; IL10 family cytokine
receptor complex, alpha helical cytokin beta sandwhich
receptor fold, signaling complex; HET: NAG; 2.80A {Homo
sapiens}
Length = 221
Score = 39.1 bits (90), Expect = 0.004
Identities = 26/190 (13%), Positives = 48/190 (25%), Gaps = 18/190 (9%)
Query: 556 TSTSVKLTWE------ILNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAH 609
+ L W + Y +IY + S +
Sbjct: 20 INMKNVLQWTPPEGLQGVKVTYTVQYFIYGQKKWLNKSECRNINRTY---CDLSAETSDY 76
Query: 610 YSRYEFFLVPFFGSVDGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGT 669
+Y + +G+ K + G P++ + SV+L
Sbjct: 77 EHQYYARVRAIWGTKCSKWAESGRFYPFLETQIGPPEVALTTDEKSISVVLTAPEKWKRN 136
Query: 670 HNGVIRTYQII-------VGGGNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAA--TN 720
+ + Q I V N + + + TL+LT L Y V + +
Sbjct: 137 PEDLPVSMQQIYSNLKYNVSVLNTKSNRTWSQCVTNHTLVLTWLEPNTLYCVHVESFVPG 196
Query: 721 RAGTGPYSRP 730
S
Sbjct: 197 PPRRAQPSEK 206
Score = 33.3 bits (75), Expect = 0.29
Identities = 25/183 (13%), Positives = 52/183 (28%), Gaps = 15/183 (8%)
Query: 322 SVQWWR-GEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFES 380
+VQ++ G+++ + L+ T + +Y V++ G+ S
Sbjct: 42 TVQYFIYGQKKWLNKSECRNINRTYCDLSAETSDYEHQYYARVRAIWGTK--------CS 93
Query: 381 PTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRP 440
+ F+ E P T + LT + Q+ +
Sbjct: 94 KWAESGRFYPFLETQIGPPEVALTTDEKSISVVLTAPEKWKRNPEDLPVSMQQIYSNLKY 153
Query: 441 LPSSSPSGDTATATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEI 500
S + T + + +T L Y V + G + S++
Sbjct: 154 NVSVLNTKSNRTWSQCVTNHTL-----VLTWLEPNTLYCVHVESFVP-GPPRRAQPSEKQ 207
Query: 501 VLR 503
R
Sbjct: 208 CAR 210
Score = 31.0 bits (69), Expect = 1.4
Identities = 30/258 (11%), Positives = 65/258 (25%), Gaps = 48/258 (18%)
Query: 391 APEPSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDT 450
P S P T ++ L W+ + + Y V+ +
Sbjct: 2 VPCVSGGLPKPANITFLSINMK-NVLQWTPPEGLQGVKV-TYTVQYFI-----------Y 48
Query: 451 ATATWVRVA----TNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTF 506
W+ + N L+ Y VRA+ S +
Sbjct: 49 GQKKWLNKSECRNINRTYCDLSAETSDYEHQYYARVRAIWGTKCSKWAESGRFYPFL--- 105
Query: 507 SEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPMTSTSVKLTWEI 566
+L + + ++ E + ++ +
Sbjct: 106 ---------------ETQIGPPEVALTTDEKSISV----VLTAPEKWKRNPEDLPVSMQQ 146
Query: 567 LNTDYIEGVYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVD- 625
+ ++ V + + + T ++T L + Y + F
Sbjct: 147 IYSNLKYNVSVLNTKSNR-------TWSQCVTNHTLVLTWLEPNTLYCVHVESFVPGPPR 199
Query: 626 -GKPSNLRAVRTLECEPS 642
+PS + RTL+ + S
Sbjct: 200 RAQPSEKQCARTLKDQSS 217
>2erj_C Cytokine receptor common gamma chain; immune system-cytok complex;
HET: NAG FUC BMA; 3.00A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1
Length = 247
Score = 39.0 bits (90), Expect = 0.004
Identities = 19/152 (12%), Positives = 44/152 (28%), Gaps = 17/152 (11%)
Query: 349 TDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFR--APEPSTYPGPPTKPTL 406
+ + C ++ + ++ + P P + + P P TL
Sbjct: 86 SHYLFSEEITSGCQLQKKEIHLYQTFVVQLQDPREPRRQATQMLKLQNLVIPWAPENLTL 145
Query: 407 VNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPI 466
+ + L L W+ + L + V+ Y +
Sbjct: 146 HKLSESQLELNWNNRF---LNHCLEHLVQ-YRTD-----------WDHSWTEQSVDYRHK 190
Query: 467 LTVTNLTVGLTYTFLVRALNSHGLSAPSPLSD 498
++ ++ YTF VR+ + + S+
Sbjct: 191 FSLPSVDGQKRYTFRVRSRFNPLCGSAQHWSE 222
>3v6o_A Leptin receptor; receptor-antibody complex, cytokine receptor,
antibody FAB F immunoglobulin fold; HET: NAG; 1.95A
{Homo sapiens}
Length = 206
Score = 38.5 bits (89), Expect = 0.005
Identities = 20/110 (18%), Positives = 34/110 (30%), Gaps = 12/110 (10%)
Query: 392 PEPSTYPGPPTKPTLVNQTANG-LTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDT 450
P+ P PP+ G L ++W + + L +Q+ SG
Sbjct: 104 PDSVVKPLPPSSVKAEITINIGLLKISW--EKPVFPENNLQFQIRYG--------LSGKE 153
Query: 451 ATATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEI 500
V + S +++ + Y VR GL S S+
Sbjct: 154 VQWKMYEV-YDAKSKSVSLPVPDLCAVYAVQVRCKRLDGLGYWSNWSNPA 202
Score = 34.3 bits (78), Expect = 0.11
Identities = 30/190 (15%), Positives = 56/190 (29%), Gaps = 24/190 (12%)
Query: 556 TSTSVKLTWE-----ILNTDYIEGVYIYSRGLDP------PASVAMLTVLHAGEASGFLV 604
T + W L ++ Y S P S L + +
Sbjct: 14 YLTKMTCRWSTSTIQSLAESTLQLRYHRSSLYCSDIPSIHPISEPKDCYLQSDGFYECIF 73
Query: 605 TGLAHYSRYEFFLVPF--FGSVDGKPSNLRAVRTLECEPSGVPQ-LTDPVLLNATSVLLK 661
+ S Y ++ GS+D P+ V P + + +N + +
Sbjct: 74 QPIFLLSGYTMWIRINHSLGSLDSPPTC---VLPDSVVKPLPPSSVKAEITINIGLLKIS 130
Query: 662 WKPPPVGTHNGVIRTYQI---IVGGGNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAA 718
W+ P +N +QI + G + A + ++ L Y+V +
Sbjct: 131 WEKPVFPENNL---QFQIRYGLSGKEVQWKMYE-VYDAKSKSVSLPVPDLCAVYAVQVRC 186
Query: 719 TNRAGTGPYS 728
G G +S
Sbjct: 187 KRLDGLGYWS 196
>3r08_E T-cell surface glycoprotein CD3 epsilon chain; antibody, T-cell
receptor, signalling, immune SY; 4.10A {Cricetulus
migratorius}
Length = 82
Score = 35.8 bits (82), Expect = 0.005
Identities = 18/63 (28%), Positives = 24/63 (38%), Gaps = 10/63 (15%)
Query: 20 GDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCV 79
G + L C P + L W+KNG + ++ K L L D S D G Y C
Sbjct: 14 GTSVELTC-PL--DSDENLKWEKNGQELPQKHDKHLVLQDF-------SEVEDSGYYVCY 63
Query: 80 VKN 82
Sbjct: 64 TPA 66
Score = 30.4 bits (68), Expect = 0.55
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 7/54 (12%)
Query: 313 LRCQVRGEGSVQWWRGEREVGSGPRVNVTGDGSLVLTDVTK-EDSGEYTCVVKS 365
L C + + +++W + +E+ P+ + D LVL D ++ EDSG Y C +
Sbjct: 19 LTCPLDSDENLKWEKNGQEL---PQKH---DKHLVLQDFSEVEDSGYYVCYTPA 66
>3bia_X T-cell immunoglobulin and mucin domain- containing protein 4; beta
barrel, immunoglobulin fold, IGV domain, TIM,
glycoprotein; HET: TLA; 2.20A {Mus musculus} PDB:
3bi9_X* 3bib_X*
Length = 116
Score = 36.9 bits (85), Expect = 0.006
Identities = 11/62 (17%), Positives = 23/62 (37%), Gaps = 7/62 (11%)
Query: 312 RLRCQVRGEGSVQWWRGEREVGSG--PRVNVT-----GDGSLVLTDVTKEDSGEYTCVVK 364
+ C + + S + + G+ SL +++ + DSG Y C ++
Sbjct: 34 KGSCPNSKCNAELLRTDGTRIISRKSTKYTLLGKVQFGEVSLTISNTNRGDSGVYCCRIE 93
Query: 365 SP 366
P
Sbjct: 94 VP 95
Score = 35.7 bits (82), Expect = 0.014
Identities = 18/106 (16%), Positives = 32/106 (30%), Gaps = 22/106 (20%)
Query: 16 RVAAGDTALLECG-PPRGHPEPTLVWKK---------------NGHPIDFENSKRLRLVD 59
G L C ++ W K +G I S + L+
Sbjct: 7 IGFLGQPVTLPCHYLSWSQSRNSMCWGKGSCPNSKCNAELLRTDGTRIISRKSTKYTLLG 66
Query: 60 GTN-----LAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKP 100
L I ++ + D G Y C ++ V G +R+ ++
Sbjct: 67 KVQFGEVSLTISNTNRGDSGVYCCRIE-VPGWFNDVKKNVRLELRR 111
Score = 30.3 bits (68), Expect = 0.97
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 152 SLQLSDVRLEDAGEYVCEAENA--VGKISASATLTVQMAPIVR 192
SL +S+ D+G Y C E + + L ++ A + R
Sbjct: 74 SLTISNTNRGDSGVYCCRIEVPGWFNDVKKNVRLELRRALVPR 116
>3up1_A Interleukin-7 receptor subunit alpha; cytokine receptor,
fibronectin type 3 fold, membrane and SOL glycosylation,
immune system; HET: NAG FUC NGA; 2.15A {Homo sapiens}
PDB: 3di3_B* 3di2_B*
Length = 223
Score = 38.6 bits (89), Expect = 0.006
Identities = 19/158 (12%), Positives = 40/158 (25%), Gaps = 13/158 (8%)
Query: 349 TDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTL-V 407
+ +++ +++ + P P ++
Sbjct: 64 VKCLNFRKLQEIYFIETKKFLLIGKSNICVKVGEKSLTCKKIDLTTIVKPEAPFDLSVVY 123
Query: 408 NQTANGLTLAWS-RNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPI 466
+ AN + ++ + Q +L + V Y + W V +
Sbjct: 124 REGANDFVVTFNTSHLQKKYVKVLMHDVA-YRQE---------KDENKWTHVNLSSTKLT 173
Query: 467 LTVTNLTVGLTYTFLVRALNSHGLSAP-SPLSDEIVLR 503
L L Y VR++ H S S R
Sbjct: 174 LLQRKLQPAAMYEIKVRSIPDHYFKGFWSEWSPSYYFR 211
Score = 34.8 bits (79), Expect = 0.10
Identities = 11/84 (13%), Positives = 26/84 (30%), Gaps = 2/84 (2%)
Query: 647 LTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTP-TLLLTN 705
L+ A ++ + + + + + + +ST TLL
Sbjct: 119 LSVVYREGANDFVVTFNTSHLQKKYVKVLMHDVAYRQEKDENKWTHVNLSSTKLTLLQRK 178
Query: 706 LSAGIRYSVSLAA-TNRAGTGPYS 728
L Y + + + + G +S
Sbjct: 179 LQPAAMYEIKVRSIPDHYFKGFWS 202
>2pnd_A V-SET and immunoglobulin domain containing 4; complement receptor,
IG-like domain, immune system; 1.00A {Mus musculus} PDB:
2icc_A 2ice_S* 2icf_S*
Length = 119
Score = 36.8 bits (85), Expect = 0.006
Identities = 17/95 (17%), Positives = 30/95 (31%), Gaps = 26/95 (27%)
Query: 296 ILFGPANQTLPLRSEARLRCQVRGEGS-----VQWWR--------------GEREVGSGP 336
L P + T + + +++C V+W +
Sbjct: 4 TLKTPESVTGTWKGDVKIQCIYDPLRGYRQVLVKWLVRHGSDSVTIFLRDSTGDHIQQAK 63
Query: 337 ---RVNVT----GDGSLVLTDVTKEDSGEYTCVVK 364
R+ V+ GD SL + + +D YTC V
Sbjct: 64 YRGRLKVSHKVPGDVSLQINTLQMDDRNHYTCEVT 98
Score = 34.5 bits (79), Expect = 0.040
Identities = 15/93 (16%), Positives = 30/93 (32%), Gaps = 25/93 (26%)
Query: 102 IIRGPKDTTVSASSIIVFECSVG---GDAVLTVHWKRLGSAMPE---------------- 142
++ P+ T + + +C G + V W +
Sbjct: 4 TLKTPESVTGTWKGDVKIQCIYDPLRGYRQVLVKWLVRHGSDSVTIFLRDSTGDHIQQAK 63
Query: 143 --DRMSVLPSR----SLQLSDVRLEDAGEYVCE 169
R+ V SLQ++ ++++D Y CE
Sbjct: 64 YRGRLKVSHKVPGDVSLQINTLQMDDRNHYTCE 96
Score = 34.5 bits (79), Expect = 0.042
Identities = 19/112 (16%), Positives = 35/112 (31%), Gaps = 23/112 (20%)
Query: 11 QPKSQRVAAGDTALLEC--GPPRGHPEPTLVWKK---NGHPIDFENSK------------ 53
P+S ++C P RG+ + + W + F
Sbjct: 7 TPESVTGTWKGDVKIQCIYDPLRGYRQVLVKWLVRHGSDSVTIFLRDSTGDHIQQAKYRG 66
Query: 54 RLRLVDGTN----LAIQDSRKTDDGRYQCVV--KNVAGTRESTDAVLRVLVK 99
RL++ L I + D Y C V + G + D ++ + V+
Sbjct: 67 RLKVSHKVPGDVSLQINTLQMDDRNHYTCEVTWQTPDGNQVIRDKIIELRVR 118
>1hxm_A Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system;
3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Length = 229
Score = 38.4 bits (90), Expect = 0.006
Identities = 16/124 (12%), Positives = 40/124 (32%), Gaps = 14/124 (11%)
Query: 282 SLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG----EGSVQWWRGEREVGSGPR 337
+TV +F +++ + C V+ + + ++ P
Sbjct: 114 RVTVEPRSQPHTKPSVF-------VMKNGTNVACLVKEFYPKDIRINLVSSKKITEFDPA 166
Query: 338 VNVTGDGS-LVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPST 396
+ ++ G + EDS TC V+ H + + ++ + + + E +
Sbjct: 167 IVISPSGKYNAVKLGKYEDSNSVTCSVQ--HDNKTVHSTDFEVKTDSTDHVKPKETENTK 224
Query: 397 YPGP 400
P
Sbjct: 225 QPSK 228
>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody,
immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL
SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2
b.1.1.2 PDB: 2qej_A*
Length = 214
Score = 37.9 bits (88), Expect = 0.008
Identities = 22/98 (22%), Positives = 37/98 (37%), Gaps = 17/98 (17%)
Query: 283 LTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG----EGSVQWWRGEREVGSGPRV 338
+ P V L P ++ L L L C RG + V+W +G +E+ +
Sbjct: 97 TLSKSGNTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYL 156
Query: 339 NVT-------GDGSLVLT---DVTKED--SGE-YTCVV 363
G + +T V ED G+ ++C+V
Sbjct: 157 TWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMV 194
Score = 37.1 bits (86), Expect = 0.013
Identities = 31/163 (19%), Positives = 44/163 (26%), Gaps = 40/163 (24%)
Query: 293 PPVILFGPANQTLPLRSEARLRCQVRG-----EGSVQWWRG----------EREVGSGPR 337
P + L PA + L L SEA L C + G + W ER++
Sbjct: 4 PRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTWTPSSGKSAVQGPPERDLCGCYS 63
Query: 338 VNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTY 397
V L +TC P +A+L T P +
Sbjct: 64 V----SSVLPGCAEPWNHGKTFTCTAAYPESKTPLTATLSKSGNTFR---------PEVH 110
Query: 398 PGPPTKPTLVNQTANGLT------------LAWSRNNQIGSSS 428
PP L LT + W + +Q
Sbjct: 111 LLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPRE 153
>3bpo_C Interleukin-13 receptor alpha-1 chain; IL4, IL13, IL4R, IL13R,
cytokine, glycoprotein, IM response, membrane,
phosphoprotein, secreted; HET: NAG; 3.00A {Homo sapiens}
PDB: 3bpn_C*
Length = 314
Score = 38.3 bits (88), Expect = 0.008
Identities = 15/89 (16%), Positives = 26/89 (29%), Gaps = 7/89 (7%)
Query: 654 NATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRYS 713
N +V+ W PP + N + Y G + + T + + L+ I
Sbjct: 16 NLCTVIWTWNPPEGASSNCSLW-YFSHFGDKQDKKIAPETRRS-----IEVPLNERICLQ 69
Query: 714 VSLAATNRAGTGP-YSRPALLSLTSGPEP 741
V + P +S G
Sbjct: 70 VGSQCSTNESEKPSILVEKCISPPEGDPE 98
Score = 31.4 bits (70), Expect = 1.2
Identities = 17/110 (15%), Positives = 30/110 (27%), Gaps = 5/110 (4%)
Query: 392 PEPSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSR--PLPSSSPSGD 449
P PP ++ + L + W N Q S L Y+VE+ + + +
Sbjct: 194 LTSRVKPDPPHIKN-LSFHNDDLYVQWE-NPQNFISRCLFYEVEVNNSQTETHNVFYVQE 251
Query: 450 TATATWVRVATNVPSPILTVTNLTVGLTYTFLVRA-LNSHGLSAPSPLSD 498
+ V + T +R N S+
Sbjct: 252 AKCENPEFERNVENTSCFMVPGVLPDTLNTVRIRVKTNKLCYEDDKLWSN 301
Score = 31.4 bits (70), Expect = 1.2
Identities = 29/351 (8%), Positives = 71/351 (20%), Gaps = 78/351 (22%)
Query: 400 PPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVA 459
P T ++ + + W+ S+ L Y
Sbjct: 6 PVTNLSVSVENLCTVIWTWNPPEGASSNCSLWYFSHF----------GDKQDKKIAPETR 55
Query: 460 TNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGTFSEGIFSEGGKGIF 519
+ L + + + + I EG
Sbjct: 56 RS------IEVPLNERICLQVGSQCSTNESEKPSILVEKCISP---------PEGDPESA 100
Query: 520 SENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPMTSTSVKLTWE-----ILNTDYIEG 574
+ + +K +W +T+Y
Sbjct: 101 VTEL---------------------------QCIWHNLSYMKCSWLPGRNTSPDTNYT-- 131
Query: 575 VYIYSRGLDPPASVAMLTVLHAGEASGFLVTGLAHYSRYEFFLVPFFGSVDGKPSNLRAV 634
+Y + R L+ + F +T + S + + GK +
Sbjct: 132 LYYWHRSLEKIHQCENIFREGQYFGCSFDLTKVKDSSFEQHSVQIMVKDNAGKIKPSFNI 191
Query: 635 RTLECE--PSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQI---IVGGGNNSAL 689
L P + + + ++W+ P Y++ ++
Sbjct: 192 VPLTSRVKPDPPHIKN--LSFHNDDLYVQWENPQ--NFISRCLFYEVEVNNSQTETHNVF 247
Query: 690 INMTVSASTPTL----------LLTNLSAGIRYSVSLAATNRAGTGPYSRP 730
P ++ + +V + +
Sbjct: 248 YVQEAKCENPEFERNVENTSCFMVPGVLPDTLNTVRIRVKTNKLCYEDDKL 298
>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin
domain, microsome, protein disulfide isomerase,
thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo
sapiens}
Length = 401
Score = 38.8 bits (89), Expect = 0.008
Identities = 49/325 (15%), Positives = 84/325 (25%), Gaps = 31/325 (9%)
Query: 135 RLGSAMPEDRMSVLPSRSLQLSD---VRLEDAGEYVCEAENAVGKISASATLTVQMAPIV 191
R G P R + P L + D Y A ++S L
Sbjct: 48 RQGPGEPPPRPDLDPELYLSVHDPAGALQAAFRRYPRGAPAPHCEMSRFVPLPASAKWAS 107
Query: 192 RERPSDLRLEVGRDAVFLCGIEGSPPPSTFWMLEGNRSLIYPGDRVDNIQAEITSDGMNL 251
P+ A + I + + P + + +
Sbjct: 108 GLTPAQNCPRALDGAWLMVSISSPVLSLSSLLRPQPEPQQEP---------VLITMATVV 158
Query: 252 LKIQNVSRTAAPLIILCLGVNAAGSDLARASLTVSGPDPNPPPVILF------GPANQTL 305
L + + + ++ + + + S S P PPP L G + L
Sbjct: 159 LTVLTHTPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKGHLLL 218
Query: 306 PLRSEARLRCQVRGEGSVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKS 365
+ EG+V + + + GP TG+G+ L V G Y +
Sbjct: 219 AATPGLNGQMPAAQEGAVAFAAWDDDEPWGPW---TGNGTFWLPRVQPFQEGTYLATIHL 275
Query: 366 PHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANG------LTLAWS 419
P+ + L P ++ P P P + + L + W
Sbjct: 276 PYLQGQVTLELAVYKPPKVSL----MPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWE 331
Query: 420 RNNQIGSSSLLGYQVEMYSRPLPSS 444
G S S S
Sbjct: 332 LRGGPGGRSQKAEGQRWLSALRHHS 356
>2c9a_A Receptor-type tyrosine-protein phosphatase MU; glycoprotein,
hydrolase, immunoglobulin domain; HET: NAG MAN NDG FUL;
2.7A {Homo sapiens} SCOP: b.1.1.4 b.29.1.25
Length = 259
Score = 37.9 bits (87), Expect = 0.009
Identities = 15/94 (15%), Positives = 29/94 (30%), Gaps = 10/94 (10%)
Query: 285 VSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRGEGSVQ---WWRGEREVGS-----GP 336
+ P P + A +C G W +G +
Sbjct: 158 LGHPCTRTPHFLRIQNVEVNAG--QFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKV 215
Query: 337 RVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSA 370
+ S + + TK D+G+Y C++++ G
Sbjct: 216 TSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVG 249
Score = 30.6 bits (68), Expect = 2.0
Identities = 18/83 (21%), Positives = 31/83 (37%), Gaps = 3/83 (3%)
Query: 17 VAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLA---IQDSRKTDD 73
V AG A +C +W + D + +A + ++ K D
Sbjct: 176 VNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDA 235
Query: 74 GRYQCVVKNVAGTRESTDAVLRV 96
G+Y+C+++ G S A L V
Sbjct: 236 GKYRCMIRTEGGVGISNYAELVV 258
>3kgr_A LAIR-1, hlair1, leukocyte-associated immunoglobulin-like receptor;
IG-like domain, cell membrane, glycoprotein; 1.80A {Homo
sapiens} PDB: 3rp1_A
Length = 106
Score = 35.8 bits (83), Expect = 0.010
Identities = 18/92 (19%), Positives = 29/92 (31%), Gaps = 16/92 (17%)
Query: 292 PPPVILFGPANQTLPLRSEARLRCQVRG---------EGSVQWWRGEREVGSGPRVNVTG 342
P P I P +PL S C+ E + E + P +
Sbjct: 8 PRPSISAEPG-TVIPLGSHVTFVCRGPVGVQTFRLERESRSTYNDTEDVSQASPSESE-- 64
Query: 343 DGSLVLTDVTKEDSGEYTCVVKSPHGSASWSA 374
+ V++ ++G Y C+ P WS
Sbjct: 65 -ARFRIDSVSEGNAGPYRCIYYKPPK---WSE 92
Score = 29.7 bits (67), Expect = 1.4
Identities = 13/88 (14%), Positives = 26/88 (29%), Gaps = 6/88 (6%)
Query: 9 RVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLA---I 65
+P + G C P G L ++ + + + A I
Sbjct: 13 SAEP-GTVIPLGSHVTFVCRGPVGVQTFRL--ERESRSTYNDTEDVSQASPSESEARFRI 69
Query: 66 QDSRKTDDGRYQCVVKNVAGTRESTDAV 93
+ + G Y+C+ E +D +
Sbjct: 70 DSVSEGNAGPYRCIYYKPPKWSEQSDYL 97
>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL
BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2
b.1.1.2 PDB: 1i1a_D*
Length = 239
Score = 37.6 bits (87), Expect = 0.010
Identities = 20/162 (12%), Positives = 37/162 (22%), Gaps = 34/162 (20%)
Query: 288 PDPNPPPVILFGPAN-QTLPLRSEARLRCQVRGEGS------VQWWRGEREV---GSGPR 337
V +F P L ++ C V W+ + EV +
Sbjct: 11 TGSEVSSVFIFPPKTKDVLGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAP 70
Query: 338 VNVTGDGS-----LVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAP 392
+ L + + + + C V S + + +
Sbjct: 71 EKQSNSTLRSVSELPIVERDWLNGKTFKCKV--------NSGAFPAPIEKSISKPEGTPR 122
Query: 393 EPSTYPGPPTKPTLVNQTAN-----------GLTLAWSRNNQ 423
P Y P K + + + W N Q
Sbjct: 123 GPQVYTMAPPKEEMTQSQVSITCMVKGFYPPDIYTEWKMNGQ 164
>4ety_A LAIR-1, mlair1, leukocyte-associated immunoglobulin-like receptor;
IG-like domain, extra celluar domain, domain swappin
nysgrc, structural genomics; 1.90A {Mus musculus}
Length = 118
Score = 35.9 bits (83), Expect = 0.011
Identities = 16/98 (16%), Positives = 29/98 (29%), Gaps = 2/98 (2%)
Query: 9 RVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDS 68
S ++ G + C H +V + E S I
Sbjct: 13 FPNS-SLMISQGTFVTVVCSYSDKHDLYNMVRLEKDGSTFMEKSTE-PYKTEDEFEIGPV 70
Query: 69 RKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGP 106
+T G Y C+ E + + ++K +I+ P
Sbjct: 71 NETITGHYSCIYSKGITWSERSKTLELKVIKENVIQTP 108
Score = 34.3 bits (79), Expect = 0.038
Identities = 11/87 (12%), Positives = 25/87 (28%), Gaps = 8/87 (9%)
Query: 292 PPPVILFGPANQTLPLRSEARLRCQVRGEG-SVQWWRGEREVGSGPRVNVTGDG---SLV 347
P I + + + + C + R E++ + +
Sbjct: 8 PDITIFPNS-SLMISQGTFVTVVCSYSDKHDLYNMVRLEKDGSTFMEKSTEPYKTEDEFE 66
Query: 348 LTDVTKEDSGEYTCVVKSPHGSASWSA 374
+ V + +G Y+C+ WS
Sbjct: 67 IGPVNETITGHYSCIYSKGIT---WSE 90
>2b5i_B Interleukin-2 receptor beta chain; four-helix bundle, fibronectin
domain, cytokine-cytokine REC complex; HET: NAG; 2.30A
{Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3qaz_B*
2erj_B*
Length = 214
Score = 37.1 bits (85), Expect = 0.015
Identities = 19/161 (11%), Positives = 38/161 (23%), Gaps = 18/161 (11%)
Query: 352 TKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTY-------PGPPTKP 404
+ S ++ +P + + +R + P
Sbjct: 53 VSQASWACNLILGAPDSQKLTTVDIVTLRVLCREGVRWRVMAIQDFKPFENLRLMAPISL 112
Query: 405 TLVNQTANGLTLAWS-RNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVP 463
+V+ + ++W L ++ P +
Sbjct: 113 QVVHVETHRCNISWEISQASHYFERHLEFEAR-TLSP--------GHTWEEAPLLTLKQK 163
Query: 464 SPILTVTNLTVGLTYTFLVRALNSHGLSAP-SPLSDEIVLR 503
+ + LT Y F VR G SP S + R
Sbjct: 164 QEWICLETLTPDTQYEFQVRVKPLQGEFTTWSPWSQPLAFR 204
Score = 31.3 bits (70), Expect = 1.3
Identities = 7/73 (9%), Positives = 18/73 (24%), Gaps = 2/73 (2%)
Query: 655 ATSVLLKWKPPPVGTHNGVIRTYQIIV--GGGNNSALINMTVSASTPTLLLTNLSAGIRY 712
+ W+ + ++ G +T+ + L L+ +Y
Sbjct: 119 THRCNISWEISQASHYFERHLEFEARTLSPGHTWEEAPLLTLKQKQEWICLETLTPDTQY 178
Query: 713 SVSLAATNRAGTG 725
+ G
Sbjct: 179 EFQVRVKPLQGEF 191
>2aw2_A B and T lymphocyte attenuator; IGI domain, IGG domain, TNFRSF,
protein-protein complex, IMM system; HET: NAG FUL; 2.80A
{Homo sapiens} SCOP: b.1.1.1
Length = 120
Score = 35.6 bits (81), Expect = 0.016
Identities = 21/89 (23%), Positives = 30/89 (33%), Gaps = 6/89 (6%)
Query: 14 SQRVAAGDTALLECGPPRGHPEPTLVWKK-NGHPIDFENSKRLRLVDGTN-----LAIQD 67
+ AGD LEC P + W K NG ++ + N L +
Sbjct: 20 EHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEP 79
Query: 68 SRKTDDGRYQCVVKNVAGTRESTDAVLRV 96
D+G Y+C + ES L V
Sbjct: 80 VLPNDNGSYRCSANFQSNLIESHSTTLYV 108
Score = 31.3 bits (70), Expect = 0.56
Identities = 25/99 (25%), Positives = 34/99 (34%), Gaps = 12/99 (12%)
Query: 98 VKPYIIRGPKDTTVSASSIIVFECSVG-GDAVLTVHWKRLG----SAMPEDRMS-----V 147
V+ YI R + ++ A EC V V W +L + + + S
Sbjct: 11 VQLYIKRQSE-HSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKN 69
Query: 148 LPSRSLQLSDVRLEDAGEYVCEAENAVGKI-SASATLTV 185
+ L V D G Y C A I S S TL V
Sbjct: 70 ISFFILHFEPVLPNDNGSYRCSANFQSNLIESHSTTLYV 108
>1eer_B Epobp, erythropoietin receptor; signal transduction, hematopoietic
cytokine, cytokine receptor class 1, complex
(cytokine/receptor); 1.90A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1 PDB: 1cn4_A 2jix_B 1eba_A* 1ern_A 1ebp_A
Length = 227
Score = 37.0 bits (85), Expect = 0.017
Identities = 20/142 (14%), Positives = 39/142 (27%), Gaps = 26/142 (18%)
Query: 358 EYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTL-VNQTANGLTL 416
V + G+ + + + P + + + L
Sbjct: 96 PLELRVTAASGAPRYHRVIHINEVVLLD--------------APVGLVARLADESGHVVL 141
Query: 417 AWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVGL 476
W + +S + Y+V++ + + RV ++NL
Sbjct: 142 RWLPPPETPMTSHIRYEVDVSAG----------QGAGSVQRVEILEGRTECVLSNLRGRT 191
Query: 477 TYTFLVRALNSHGLSAPSPLSD 498
YTF VRA S S+
Sbjct: 192 RYTFAVRA-RMAEPSFGGFWSE 212
Score = 31.6 bits (71), Expect = 1.0
Identities = 17/124 (13%), Positives = 26/124 (20%), Gaps = 4/124 (3%)
Query: 379 ESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYS 438
E P F + P + + L W G Y Y
Sbjct: 2 EFPPPNPDPKFESKAALLAARGPEELLCFTERLEDLVCFWEEAASAGVGPG-QYSFS-YQ 59
Query: 439 RPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSD 498
T S L + + + V A + +
Sbjct: 60 LEDEPWKLCRLHQAPTARGAVRFWCS--LPTADTSSFVPLELRVTAASGAPRYHRVIHIN 117
Query: 499 EIVL 502
E+VL
Sbjct: 118 EVVL 121
>2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN;
1.82A {Gallus gallus}
Length = 105
Score = 35.1 bits (81), Expect = 0.018
Identities = 19/86 (22%), Positives = 25/86 (29%), Gaps = 7/86 (8%)
Query: 292 PPPVILFGPANQTLPLRSEARLRCQVRGEG-SVQWWRGEREVGSGPRVNVTGDGSLVLTD 350
P P + P +Q + L LRC + VQ W +
Sbjct: 4 PQPSLSLHP-SQGVSLGDTVTLRCHLPRMAAWVQLWLNGTLRFDKEKDKEQDAAEFSFAV 62
Query: 351 VTKEDSGEYTCV--VKSPHGSASWSA 374
ED+G Y C V P S
Sbjct: 63 TNLEDAGTYQCRYQVSEPLW---TSN 85
>2pkd_A SLAM family member 5; signaling lymphocyte activation molecule,
IGV, immunoglobulin variable, IGC, immunoglobulin
constant, signaling protein; 2.04A {Homo sapiens}
Length = 111
Score = 35.3 bits (81), Expect = 0.018
Identities = 8/30 (26%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 337 RVNV-TGDGSLVLTDVTKEDSGEYTCVVKS 365
R++ + +LV++D+ ED+G+Y + +
Sbjct: 64 RIHALGPNYNLVISDLRMEDAGDYKADINT 93
Score = 34.9 bits (80), Expect = 0.023
Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 142 EDRMSVL-PSRSLQLSDVRLEDAGEYVCE--AENAVGKISASATLTV 185
+R+ L P+ +L +SD+R+EDAG+Y + + + L +
Sbjct: 62 YERIHALGPNYNLVISDLRMEDAGDYKADINTQADPYTTTKRYNLQI 108
Score = 31.4 bits (71), Expect = 0.44
Identities = 14/103 (13%), Positives = 26/103 (25%), Gaps = 18/103 (17%)
Query: 12 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNG----------------HPIDFENSKRL 55
+ G++ + W +R+
Sbjct: 6 IFTVNGILGESVTFPVNIQEPRQVKIIAWTSKTSVAYVTPGDSETAPVVTVTHRNYYERI 65
Query: 56 RLVDGT-NLAIQDSRKTDDGRYQCVVKNVAGTRESTDAV-LRV 96
+ NL I D R D G Y+ + A +T L++
Sbjct: 66 HALGPNYNLVISDLRMEDAGDYKADINTQADPYTTTKRYNLQI 108
>1kgc_D T-cell receptor alpha chain; LC13 clone, immune system; 1.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1mi5_D 3kpr_D 3kps_D
3o6f_C 3t0e_C 3pqy_D 2esv_D 3dxa_D 3dx9_A
Length = 206
Score = 36.9 bits (85), Expect = 0.019
Identities = 22/166 (13%), Positives = 45/166 (27%), Gaps = 29/166 (17%)
Query: 300 PANQTLPLRSEARLRC---QVRGEGSVQWWR--------------GEREVGSGPRVNVTG 342
P + L C + G + W+R + +
Sbjct: 6 PNSMESNEEEPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAE 65
Query: 343 DG---SLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNI-GFFRAPEPSTYP 398
D +L+L T D+ Y C++ P + L F T + + P+P+ Y
Sbjct: 66 DRKSSTLILHRATLRDAAVYYCIL--PLAGGTSYGKLTFGQGTILTVHPNIQNPDPAVYQ 123
Query: 399 --GPPTKPTLV----NQTANGLTLAWSRNNQIGSSSLLGYQVEMYS 438
+ V + + ++ + + M
Sbjct: 124 LRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYITDKTVLDMRSMDF 169
Score = 33.4 bits (76), Expect = 0.22
Identities = 16/104 (15%), Positives = 30/104 (28%), Gaps = 11/104 (10%)
Query: 283 LTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG---EGSVQWWRGEREVGSGPRVN 339
LTV NP P + Q +S + C + +V + + V
Sbjct: 108 LTVHPNIQNPDPAVY-----QLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYITDKTVL 162
Query: 340 -VTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPT 382
+ + V + ++ C ++ F SP
Sbjct: 163 DMRSMDFKSNSAVAWSNKSDFACANA--FNNSIIPEDTFFPSPE 204
>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus
musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A
1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B
2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B*
2aq3_A 3mc0_A 3byt_A 3bzd_A ...
Length = 238
Score = 36.9 bits (85), Expect = 0.021
Identities = 28/122 (22%), Positives = 42/122 (34%), Gaps = 15/122 (12%)
Query: 280 RASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG----EGSVQWWRGEREVGSG 335
R ++ PP V LF P+ + + +A L C RG + WW +EV SG
Sbjct: 108 RLTVLEDLRQVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVHSG 167
Query: 336 ----PRVNVTGDGSLVLT---DVTKED----SGEYTCVVKSPHGSASWSASLRFESPTNP 384
P+ + S L+ V+ + C V+ S P
Sbjct: 168 VSTDPQAYKESNYSYCLSSRLRVSATFWHNPRNHFRCQVQFHGLSEEDKWPEGSPKPVTQ 227
Query: 385 NI 386
NI
Sbjct: 228 NI 229
Score = 31.1 bits (70), Expect = 1.6
Identities = 23/123 (18%), Positives = 32/123 (26%), Gaps = 19/123 (15%)
Query: 334 SGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPE 393
R + SL+L T + Y C GS + T P
Sbjct: 63 KASRPSQE-QFSLILELATPSQTSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVTP- 120
Query: 394 PSTYPGPP--------TKPTLV----NQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPL 441
P P K TLV + + L+W N + S V +
Sbjct: 121 PKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVHSG-----VSTDPQAY 175
Query: 442 PSS 444
S
Sbjct: 176 KES 178
>3noi_A Natural cytotoxicity triggering receptor 3; immune system, innate
immunity, immunoglobulin-like I2 type natural killer
cell activation; HET: 1PG; 1.84A {Homo sapiens} PDB:
3pv6_B*
Length = 120
Score = 35.3 bits (81), Expect = 0.022
Identities = 19/88 (21%), Positives = 27/88 (30%), Gaps = 18/88 (20%)
Query: 11 QPKSQRVAAGDTALLEC---GPPRGHPEPTLVWKKNGHP-----IDFENSKRLRLVDGTN 62
QP R G +A L C ++ W ++ + R RL +
Sbjct: 13 QPPEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEVVPGKEVRNGTPEFRGRLAPLAS 72
Query: 63 ----------LAIQDSRKTDDGRYQCVV 80
L I+D R D Y C V
Sbjct: 73 SRFLHDHQAELHIRDVRGHDASIYVCRV 100
Score = 33.4 bits (76), Expect = 0.085
Identities = 25/88 (28%), Positives = 35/88 (39%), Gaps = 20/88 (22%)
Query: 119 FECSVGGDAVLTVHWKR----------LGSAMPEDRMSVLPSR--------SLQLSDVRL 160
F S G A+ +V W R G+ R++ L S L + DVR
Sbjct: 31 FNASQGRLAIGSVTWFRDEVVPGKEVRNGTPEFRGRLAPLASSRFLHDHQAELHIRDVRG 90
Query: 161 EDAGEYVCEAE-NAVGKISASAT-LTVQ 186
DA YVC E +G + + T L V+
Sbjct: 91 HDASIYVCRVEVLGLGVGTGNGTRLVVE 118
Score = 33.0 bits (75), Expect = 0.11
Identities = 10/45 (22%), Positives = 15/45 (33%)
Query: 322 SVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSP 366
+RG + R L + DV D+ Y C V+
Sbjct: 59 GTPEFRGRLAPLASSRFLHDHQAELHIRDVRGHDASIYVCRVEVL 103
>3lb6_C IL-13, interleukin-13 receptor subunit alpha-2; cytokine, decoy,
decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo
sapiens} PDB: 3lb6_D*
Length = 380
Score = 37.1 bits (85), Expect = 0.025
Identities = 17/99 (17%), Positives = 31/99 (31%), Gaps = 14/99 (14%)
Query: 400 PPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVA 459
PP T +++ + L WS + Y++E+ T V
Sbjct: 240 PPVYLTFTRESSCEIKLKWSIPLGPIPARCFDYEIEIRED------------DTTLVTA- 286
Query: 460 TNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSD 498
V + T+ F+VR+ + S S+
Sbjct: 287 -TVENETYTLKTTNETRQLCFVVRSKVNIYCSDDGIWSE 324
Score = 34.0 bits (77), Expect = 0.22
Identities = 45/430 (10%), Positives = 102/430 (23%), Gaps = 89/430 (20%)
Query: 384 PNIGFFRAPEPSTYPGPPTKPTLVNQTANG-LTLAWS--RNNQIGSSSLLGYQVEMYSRP 440
G + + PP +V+ G L L W + + Y+++ Y
Sbjct: 18 TTFGCTSSSDTEIKVNPPQDFEIVDPGYLGYLYLQWQPPLSLDHFKECTVEYELK-YRNI 76
Query: 441 LPSSSPSGDTATATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEI 500
+ TW + T +L G+
Sbjct: 77 ----------GSETWKTIITKNLHYK-DGFDLNKGIEAXIHTLLPW-------------- 111
Query: 501 VLRGTFSEGIFSEGGKGIFSENFPDEGRGESLRRARQHLQEGGGSLIELTEVKPMTSTSV 560
+ T + S + Q + ++ + +
Sbjct: 112 --QCTNGSEVQSS----------------WAETTYWISPQGIPETXVQDMDCVYYNWQYL 153
Query: 561 KLTWEILNTDYIEGVY--IYSRGLDPPASVAMLTVLHAGEASG--FLVTGLAHYSRYEFF 616
+W+ ++ Y Y A + + G+ G F + Y +
Sbjct: 154 LCSWKPGIGVLLDTNYNLFYWYEGLDHALQCVDYIKADGQNIGCRFPYLEASDYKDFYIC 213
Query: 617 LVPFFGSVDGKPSNLRAVRTLECEPSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRT 676
+ + + S + P ++ + LKW P
Sbjct: 214 VNGSSENKPIRSSYFT-FQLQNIVKPLPPVYLTFTRESSCEIKLKWSIPLGPIPARCF-D 271
Query: 677 YQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNR---AGTGPYSRPALL 733
Y+I + + + +T + T L + + + + + G +S
Sbjct: 272 YEIEIREDDTT---LVTATVENETYTLKTTNETRQLCFVVRSKVNIYCSDDGIWS----- 323
Query: 734 SLTSGPEPRLEDWASQSGRSRGDGTMETDLTDLTGGAWLSAPWFIALLTSMVAVMALLFL 793
+W S G L ++ ++F+
Sbjct: 324 -----------EW-SDK-------------QCWEGEDLSKKTLLRFWLPFGFILILVIFV 358
Query: 794 AMFFVRRRTL 803
+R+
Sbjct: 359 TGLLLRKPNT 368
>1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein
complex, hydrolase/immune system complex; 1.45A
{Ginglymostoma cirratum} SCOP: b.1.1.1 PDB: 1t6v_N
Length = 113
Score = 34.7 bits (80), Expect = 0.026
Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 19/80 (23%)
Query: 311 ARLRCQVRG----EGSVQWWRGEREVGSGPRVNVTGDG-------------SLVLTDVTK 353
+ C +R GS W+R + G G +++ G SL + D+T
Sbjct: 18 LTINCVLRDASYALGSTCWYRKKS--GEGNEESISKGGRYVETVNSGSKSFSLRINDLTV 75
Query: 354 EDSGEYTCVVKSPHGSASWS 373
ED G Y C + G ++
Sbjct: 76 EDGGTYRCGLGVAGGYCDYA 95
Score = 27.7 bits (62), Expect = 7.6
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 152 SLQLSDVRLEDAGEYVCEAENAVG 175
SL+++D+ +ED G Y C A G
Sbjct: 67 SLRINDLTVEDGGTYRCGLGVAGG 90
>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system;
1.63A {Mus musculus} PDB: 2ptv_A
Length = 110
Score = 34.8 bits (80), Expect = 0.028
Identities = 18/96 (18%), Positives = 24/96 (25%), Gaps = 16/96 (16%)
Query: 17 VAAGDTALLECGPPRGHPEPTLVWKKN----------GHPIDFENSK---RLRLVDGT-N 62
G L+ P + W S+ R+ L +
Sbjct: 15 AYTGSNVTLKIHKDPLGPYRRITWLHTKNQKILEYNYNSTKTIFESEFKGRVYLEENNGA 74
Query: 63 LAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLV 98
L I + RK D G Y V T L V
Sbjct: 75 LHISNVRKEDKGTYYMRVLR--ETENELKITLEVFD 108
Score = 34.4 bits (79), Expect = 0.030
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 341 TGDGSLVLTDVTKEDSGEYTCVV 363
+G+L +++V KED G Y V
Sbjct: 70 ENNGALHISNVRKEDKGTYYMRV 92
Score = 31.4 bits (71), Expect = 0.36
Identities = 11/34 (32%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 152 SLQLSDVRLEDAGEYVCEAENAVGKISASATLTV 185
+L +S+VR ED G Y TL V
Sbjct: 74 ALHISNVRKEDKGTYYMRVLRETEN-ELKITLEV 106
>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane,
immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B*
3q5t_A
Length = 240
Score = 36.5 bits (84), Expect = 0.028
Identities = 34/180 (18%), Positives = 53/180 (29%), Gaps = 21/180 (11%)
Query: 227 NRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSR--TAAPLIILCLGVNAAGSDLARASLT 284
+ G + D + + + + +A L LT
Sbjct: 52 EKVERDKGFLPSRFSVQQFDDYHSEMNMSALELEDSAMYFCASSLRWGDEQYFGPGTRLT 111
Query: 285 VSGP--DPNPPPVILFGPANQTLPLRSEARLRCQVRG----EGSVQWWRGEREVGSG--- 335
V + PP V LF P+ + + +A L C RG + WW +EV SG
Sbjct: 112 VLEDLRNVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVHSGVST 171
Query: 336 -PRVNVTGDG----SLVLTDVTKED----SGEYTCVVKSPHGSASWSASLRFESPTNPNI 386
P+ + S L V+ + C V+ S P NI
Sbjct: 172 DPQAYKESNYSYSLSSRLR-VSATFWHNPRNHFRCQVQFHGLSEEDKWPEGSPKPVTQNI 230
>3nfj_J T cell receptor beta chain; immunoglobulin family, immune system;
2.68A {Homo sapiens} PDB: 3hg1_E
Length = 245
Score = 36.4 bits (84), Expect = 0.029
Identities = 35/152 (23%), Positives = 51/152 (33%), Gaps = 34/152 (22%)
Query: 283 LTVSGPD--PNPPPVILFGPANQTLPLRSEARLRCQVRG----EGSVQWWRGEREVGSGP 336
LTV PP V +F P+ + +A L C G + WW +EV SG
Sbjct: 112 LTVVEDLNKVFPPEVAVFEPSEAEISHTQKATLVCLATGFFPDHVELSWWVNGKEVHSG- 170
Query: 337 RVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRF-----ESPTNP---NIGF 388
V D L + + Y + S+ LR ++P N + F
Sbjct: 171 ---VCTDPQ-PLKEQPALNDSRY-----------ALSSRLRVSATFWQNPRNHFRCQVQF 215
Query: 389 FRAPEPSTYPGPPTKPTLVNQTANGLTLAWSR 420
+ E + KP +A AW R
Sbjct: 216 YGLSENDEWTQDRAKPVTQIVSAE----AWGR 243
>1xt5_A Variable region-containing chitin-binding protein 3; innate
immunity, VCBP, primordial antigen receptor, florida
lancelet, amphioxus; 1.15A {Branchiostoma floridae}
Length = 135
Score = 35.2 bits (80), Expect = 0.032
Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
Query: 337 RVNVT--GDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLR 377
R +V +L LT V +D G Y C V + +
Sbjct: 83 RASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAK 125
Score = 34.4 bits (78), Expect = 0.059
Identities = 21/115 (18%), Positives = 28/115 (24%), Gaps = 32/115 (27%)
Query: 16 RVAAGDTALLECG--PPRGHPEPTLVWKKNGHP--------------------------- 46
V AG T L C P + W K P
Sbjct: 15 EVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYK 74
Query: 47 ---IDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLV 98
DF + + L + D GRY C V + E V++
Sbjct: 75 ESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVL 129
Score = 32.1 bits (72), Expect = 0.32
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 152 SLQLSDVRLEDAGEYVCEAEN 172
+L+L+ V +D G Y C+
Sbjct: 93 TLRLTHVHPQDGGRYWCQVAQ 113
>3dbx_A CD1-2 antigen; CD1, evolution, antigen-presentation, MHC-fold,
hydrophobic groove, immunoglobulin domain, membrane,
transmembrane; HET: NAG PLM; 2.00A {Gallus gallus}
Length = 289
Score = 36.0 bits (84), Expect = 0.039
Identities = 19/85 (22%), Positives = 31/85 (36%), Gaps = 16/85 (18%)
Query: 292 PPPVILFGPANQTLPLRSEARLRCQVRG----EGSVQWWRGEREVGSGPRVNVT-----G 342
PP ++F + + L C+V +V W R REV P ++
Sbjct: 190 PPMAVVFART----AGQVQLLLVCRVTSFYPRPIAVTWLRDGREVPPSPALSTGTVLPNA 245
Query: 343 DGSL---VLTDVTKEDSGEYTCVVK 364
D + V+ +D Y C V+
Sbjct: 246 DLTYQLRSTLLVSPQDGHGYACRVQ 270
>3n06_B PRL-R, prolactin receptor; PH dependence, hematopoietic cytokine,
hormone-hormone recep complex; 2.00A {Homo sapiens} PDB:
3mzg_B 3n0p_B 3ncb_B 1bp3_B 3d48_R 3nce_B 3ncc_B 3ncf_B
3ew3_B 3npz_B 1f6f_B 2lfg_A
Length = 210
Score = 35.5 bits (81), Expect = 0.044
Identities = 15/94 (15%), Positives = 27/94 (28%), Gaps = 4/94 (4%)
Query: 641 PSGVPQLTDPVLLNATSVLLKWKPPPVG-THNGVIR-TYQIIVGGGNNSALINMTVSAST 698
P + + +KW PP + G Y+I + + T
Sbjct: 106 PLELAVEVKQPEDRKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAAEWEIHFAGQQT 165
Query: 699 PTLLLTNLSAGIRYSVSLAATNRAGT-GPYSRPA 731
+ +L G +Y V + G +S
Sbjct: 166 -EFKILSLHPGQKYLVQVRCKPDHGYWSAWSPAT 198
Score = 33.5 bits (76), Expect = 0.22
Identities = 31/200 (15%), Positives = 58/200 (29%), Gaps = 30/200 (15%)
Query: 313 LRCQVRGEGSVQ-WWRGEREVGSGPRVNVT---GDGSLVLTDVTKEDSGEYTCVVKSPHG 368
+C+ + + WWR + G ++T +L+ G +C +
Sbjct: 10 FKCRSPNKETFTCWWRPGTDGGLPTNYSLTYHREGETLMHECPDYITGGPNSCHFGKQYT 69
Query: 369 SASWSASLRFES-----PTNPNIGFFRAPEPSTYPGPPTKPTL----VNQTANGLTLAWS 419
S + + + + + + P PP + + L + WS
Sbjct: 70 SMWRTYIMMVNATNQMGSSFSDELYV-DVTYIVQPDPPLELAVEVKQPEDRKPYLWIKWS 128
Query: 420 R---NNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVGL 476
+ L Y++ + P W + + +L G
Sbjct: 129 PPTLIDLKTGWFTLLYEIRL--------KPEKAA---EW-EIHFAGQQTEFKILSLHPGQ 176
Query: 477 TYTFLVRALNSHGL-SAPSP 495
Y VR HG SA SP
Sbjct: 177 KYLVQVRCKPDHGYWSAWSP 196
Score = 31.2 bits (70), Expect = 1.2
Identities = 17/100 (17%), Positives = 22/100 (22%), Gaps = 9/100 (9%)
Query: 398 PGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVR 457
PG P + T W G + L P T
Sbjct: 4 PGKPEIFKCRSPNKETFTCWWRPGTDGGLPTNYSLTYHREGETLMHECPDYITGGPNSCH 63
Query: 458 VATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLS 497
++ TY +V A N G S L
Sbjct: 64 ---------FGKQYTSMWRTYIMMVNATNQMGSSFSDELY 94
Score = 28.5 bits (63), Expect = 8.4
Identities = 16/89 (17%), Positives = 28/89 (31%), Gaps = 1/89 (1%)
Query: 641 PSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIR-TYQIIVGGGNNSALINMTVSASTP 699
P G P++ N + W+P G TY + +T ++
Sbjct: 3 PPGKPEIFKCRSPNKETFTCWWRPGTDGGLPTNYSLTYHREGETLMHECPDYITGGPNSC 62
Query: 700 TLLLTNLSAGIRYSVSLAATNRAGTGPYS 728
S Y + + ATN+ G+
Sbjct: 63 HFGKQYTSMWRTYIMMVNATNQMGSSFSD 91
>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid
factor IGG1-FC, immunoglobulin C region, membrane,
glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG
GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Length = 234
Score = 35.9 bits (83), Expect = 0.045
Identities = 22/126 (17%), Positives = 41/126 (32%), Gaps = 18/126 (14%)
Query: 63 LAIQDSRKTDDGRYQCVVKNV--------AGTRESTDAVLRVLVKPYIIRGPKDTTVSAS 114
LAI R D+ Y C + GT+ + + + + +
Sbjct: 93 LAISGLRSEDEADYYCATWDDSLSAVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANK 152
Query: 115 SIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSR----------SLQLSDVRLEDAG 164
+ +V S +TV WK G+ + + PS+ L L+ + +
Sbjct: 153 ATLVCLISDFFPGAVTVAWKADGAPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHR 212
Query: 165 EYVCEA 170
Y C+
Sbjct: 213 SYSCQV 218
>4esk_A LAIR-1, mlair1, leukocyte-associated immunoglobulin-like receptor;
IG-like domain, domain swapping, collagen receptor,
structural genomics; 1.76A {Mus musculus}
Length = 102
Score = 33.9 bits (78), Expect = 0.048
Identities = 11/87 (12%), Positives = 26/87 (29%), Gaps = 8/87 (9%)
Query: 292 PPPVILFGPANQTLPLRSEARLRCQVRGEG-SVQWWRGEREVGSGPRVNVTGDGS---LV 347
P I + + + + C + R E++ + + +
Sbjct: 8 PDITIFPNS-SLMISQGTFVTVVCSYSDKHDLYNMVRLEKDGSTFMEKSTEPYKTEDEFE 66
Query: 348 LTDVTKEDSGEYTCVVKSPHGSASWSA 374
+ V + +G Y+C+ WS
Sbjct: 67 IGPVNETITGHYSCIYSKGIT---WSE 90
Score = 30.8 bits (70), Expect = 0.47
Identities = 15/90 (16%), Positives = 31/90 (34%), Gaps = 5/90 (5%)
Query: 9 RVQPKSQRVAAGDTALLECGPPRGHPEPTLVW-KKNGHPIDFENSKRLRLVDGTNLAIQD 67
S ++ G + C H +V +K+G ++++ + I
Sbjct: 13 FPNS-SLMISQGTFVTVVCSYSDKHDLYNMVRLEKDGSTFMEKSTEPYK--TEDEFEIGP 69
Query: 68 SRKTDDGRYQCVVKNVAGTRESTDAV-LRV 96
+T G Y C+ E + + L+V
Sbjct: 70 VNETITGHYSCIYSKGITWSERSKTLELKV 99
>2qsq_A Carcinoembryonic antigen-related cell adhesion MO; glycoprotein,
GPI-anchor, immunoglobulin DOMA lipoprotein, membrane;
1.95A {Homo sapiens} PDB: 2qst_A 2ver_N* 2gk2_A
Length = 111
Score = 34.2 bits (78), Expect = 0.048
Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 335 GPRVNVTGDGSLVLTDVTKEDSGEYTC-VVKSPHGSASWSASLRFESP 381
R + + SL++ ++ + D+G YT V+KS + + R
Sbjct: 63 SGREIIYPNASLLIQNIIQNDAGFYTLHVIKSDLVNEEATGQFRVYPE 110
>3g08_A T-cell surface glycoprotein CD1D1; antigen presentation,
glycolipid, NKT cells, cell membrane, glycoprotein,
immune response, immunoglobulin domain; HET: NAG FEE
PLM; 1.60A {Mus musculus} PDB: 1z5l_A* 2gaz_A* 2q7y_A*
2akr_A* 3ma7_C* 3o8x_A* 3o9w_A* 3qux_A* 3quy_A* 3quz_A*
3rzc_A* 3t1f_A* 3ta3_A* 3tvm_A* 3ubx_A* 3ilp_A* 3ilq_C*
3rtq_A* 3rug_A* 3ard_A* ...
Length = 285
Score = 35.6 bits (83), Expect = 0.052
Identities = 16/68 (23%), Positives = 22/68 (32%), Gaps = 9/68 (13%)
Query: 306 PLRSEARLRCQVRG----EGSVQWWRGEREVGSGPRVNV--TGDGSL---VLTDVTKEDS 356
+L C V G V W RG++E R + D + DV +
Sbjct: 199 SAHGHRQLVCHVSGFYPKPVWVMWMRGDQEQQGTHRGDFLPNADETWYLQATLDVEAGEE 258
Query: 357 GEYTCVVK 364
C VK
Sbjct: 259 AGLACRVK 266
>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A
1r70_B 3cm9_A
Length = 475
Score = 36.1 bits (83), Expect = 0.053
Identities = 31/173 (17%), Positives = 49/173 (28%), Gaps = 33/173 (19%)
Query: 284 TVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG-----EGSVQWWRGEREVGSG--- 335
V+ +P +F + + + C V+G SV W + V +
Sbjct: 117 LVTVSSASPTSPKVFPLSLCSTQPDGNVVIACLVQGFFPQEPLSVTWSESGQGVTARNFP 176
Query: 336 PRVNVTGD-----GSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFR 390
P + +GD L L TC VK + T P
Sbjct: 177 PSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPSQDVTVPCPVPSTPPTPSPST 236
Query: 391 APEPSTYPGPPT--------KPTLVNQTAN------------GLTLAWSRNNQ 423
P PS P + L+ AN G+T W+ ++
Sbjct: 237 PPTPSPSCCHPRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTWTPSSG 289
Score = 34.5 bits (79), Expect = 0.15
Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 17/92 (18%)
Query: 289 DPNPPPVILFGPANQTLPLRSEARLRCQVRG----EGSVQWWRGEREVGSGPRVN----- 339
+ P V L P ++ L L L C RG + V+W +G +E+ +
Sbjct: 346 NTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQ 405
Query: 340 --VTGDGSLVLT---DVTKED--SGE-YTCVV 363
G + +T V ED G+ ++C+V
Sbjct: 406 EPSQGTTTFAVTSILRVAAEDWKKGDTFSCMV 437
>3ott_A Two-component system sensor histidine kinase; beta-propeller,
beta-sandwich, transcription; HET: TBR; 2.30A
{Bacteroides thetaiotaomicron}
Length = 758
Score = 36.2 bits (84), Expect = 0.054
Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Query: 455 WVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIV 501
W + +N+ +T +NL+ G Y ++ L G + P I
Sbjct: 702 WNFLKSNINR--ITYSNLSYG-NYQLIISKLERDGQPSNRPHILNIR 745
>3jvg_A T-cell surface glycoprotein CD1A1 antigen; CD1, T-cell, lipid,
antigen, transmembrane, disulfide bond, immune response,
immunoglobulin domain, MHC I, polymorphism; HET: UNL
NAG; 2.20A {Gallus gallus}
Length = 281
Score = 35.3 bits (82), Expect = 0.079
Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 12/67 (17%)
Query: 310 EARLRCQVRG----EGSVQWWRGEREVGSGPRVNVT-----GDGSL---VLTDVTKEDSG 357
+ L C+V +V W R REV P ++ D + V+ +D
Sbjct: 196 QLLLVCRVTSFYPRPIAVTWLRDGREVPPSPALSTGTVLPNADLTYQLRSTLLVSPQDGH 255
Query: 358 EYTCVVK 364
Y C V+
Sbjct: 256 GYACRVQ 262
>3tgx_A Interleukin-21 receptor; class I cytokine, class I cytokine
receptor, sugarbridge, fibronectine domain, signaling,
cytokine-cytokine receptor; HET: MAN FUL NAG BMA FUC;
2.80A {Homo sapiens}
Length = 219
Score = 34.7 bits (79), Expect = 0.082
Identities = 24/146 (16%), Positives = 45/146 (30%), Gaps = 14/146 (9%)
Query: 359 YTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTY--PGPPTKPTLVNQTANGLTL 416
YTC + H A S++ + + + P PP T+ + +
Sbjct: 60 YTCHMDVFHFMADDIFSVQITDQSGQYSQECGSFLLAESIKPAPPFDVTVTF--SGQYQI 117
Query: 417 AWS----RNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNL 472
+W L Y+++ +R P + + ++ + S L
Sbjct: 118 SWRSDYEDPAFYMLKGKLQYELQYRNRGDPWAV------SPRRKLISVDSRSVSLLPLEF 171
Query: 473 TVGLTYTFLVRALNSHGLSAPSPLSD 498
+Y VRA G S S+
Sbjct: 172 RKDSSYELQVRAGPMPGSSYQGTWSE 197
>1cd1_A CD1, MCD1D.1; immunology, MHC, TCR, glycoprotein, signal,
immunoglobulin fold, T-cell; 2.67A {Mus musculus} SCOP:
b.1.1.2 d.19.1.1
Length = 315
Score = 35.3 bits (82), Expect = 0.091
Identities = 16/68 (23%), Positives = 22/68 (32%), Gaps = 9/68 (13%)
Query: 306 PLRSEARLRCQVRG----EGSVQWWRGEREVGSGPRVNV--TGDGSL---VLTDVTKEDS 356
+L C V G V W RG++E R + D + DV +
Sbjct: 196 SAHGHRQLVCHVSGFYPKPVWVMWMRGDQEQQGTHRGDFLPNADETWYLQATLDVEAGEE 255
Query: 357 GEYTCVVK 364
C VK
Sbjct: 256 AGLACRVK 263
>1oga_D T-cell receptor alpha chain V region, beta-2-microglobulin; immune
system/receptor, immune system/receptor/complex, TCR,
MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.2 PDB: 2xna_A 2xn9_A 2vlm_D 2vlk_D
2vlj_D 2vlr_D 2cdf_A 2wbj_C* 3qdm_D 3qeq_D
Length = 215
Score = 34.6 bits (79), Expect = 0.11
Identities = 16/105 (15%), Positives = 31/105 (29%), Gaps = 11/105 (10%)
Query: 283 LTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG---EGSVQWWRGEREVGSGPRVN 339
L+V NP P + Q +S + C + +V + + V
Sbjct: 106 LSVKPNIQNPDPAV-----YQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYITDKTVL 160
Query: 340 -VTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTN 383
+ + V + ++ C ++ F SP N
Sbjct: 161 DMRSMDFKSNSAVAWSNKSDFACANA--FNNSIIPEDTFFPSPEN 203
>2ol3_A BM3.3 T-cell receptor alpha-chain; T cell receptor, class I MHC,
H-2KBM8, TCR-PMHC complex, IMM system; HET: NAG; 2.90A
{Mus musculus} SCOP: b.1.1.1
Length = 142
Score = 33.5 bits (77), Expect = 0.12
Identities = 12/57 (21%), Positives = 19/57 (33%), Gaps = 9/57 (15%)
Query: 345 SLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPT----NPNIGFFRAPEPSTY 397
L++T EDS Y C ++ +G + L F + T P
Sbjct: 75 GLIITATQIEDSAVYFCAMRGDYGGSGN--KLIFGTGTLLSVKPGS---ADDAKKDA 126
>2bnu_A TCR alpha chain, T-cell receptor alpha chain C region; superagonist
peptide T-cell vaccines, transmembrane, immunoglobulin
domain; 1.40A {Homo sapiens} PDB: 2bnq_D 2bnr_D 2f54_D
2pyf_A* 2pye_D* 2f53_D 2p5e_D* 2p5w_D* 3mv7_D 3mv8_D
3mv9_D 3utt_D 2cdg_A
Length = 203
Score = 34.2 bits (78), Expect = 0.12
Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 15/82 (18%)
Query: 331 EVGSGPRVNVTGDG-----SLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPT--- 382
+ R+N + D +L + DS Y C V+ G + F T
Sbjct: 54 REQTSGRLNASLDKSSGRSTLYIAASQPGDSATYLCAVRPTSGGSYI---PTFGRGTSLI 110
Query: 383 -NPNIGFFRAPEPSTYPGPPTK 403
+P I + P+P+ Y +K
Sbjct: 111 VHPYI---QNPDPAVYQLRRSK 129
>1nko_A Sialic acid binding IG-like lectin 7; immunoglobulin, siglec7,
immune system; 1.45A {Homo sapiens} SCOP: b.1.1.1 PDB:
2g5r_A* 1o7v_A* 2df3_A* 1o7s_A* 2hrl_A*
Length = 132
Score = 33.4 bits (76), Expect = 0.12
Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 7/42 (16%)
Query: 337 RVNVTGD-----GSLVLTDVTKEDSGEYTCVVKSPHGSASWS 373
R ++ GD +L + D D+G Y ++ G+ W+
Sbjct: 76 RFHLLGDPQTKNCTLSIRDARMSDAGRYFFRMEK--GNIKWN 115
Score = 33.0 bits (75), Expect = 0.16
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 152 SLQLSDVRLEDAGEYVCEAENAVGKISA-SATLTVQM 187
+L + D R+ DAG Y E K + L+V +
Sbjct: 89 TLSIRDARMSDAGRYFFRMEKGNIKWNYKYDQLSVNV 125
Score = 31.8 bits (72), Expect = 0.35
Identities = 22/120 (18%), Positives = 41/120 (34%), Gaps = 27/120 (22%)
Query: 6 EEFRVQ-PKSQRVAAGDTALLEC---GPPRGHPEPTLV---WKKNGHPIDFE-----NSK 53
+++ + S V G + C P + V W + G+ I ++ N+
Sbjct: 6 KDYSLTMQSSVTVQEGMCVHVRCSFSYPVDSDTDSDPVHGYWFRAGNDISWKAPVATNNP 65
Query: 54 RLRLVDGTN---------------LAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLV 98
+ + T L+I+D+R +D GRY ++ L V V
Sbjct: 66 AWAVQEETRDRFHLLGDPQTKNCTLSIRDARMSDAGRYFFRMEKGNIKWNYKYDQLSVNV 125
>3nwm_A Peptide/beta-2microglobulin/MHC class I H-2KD CHI protein;
peptide-MHC complex, immunoglobulin fold system; 2.70A
{Synthetic}
Length = 443
Score = 34.7 bits (80), Expect = 0.14
Identities = 18/121 (14%), Positives = 38/121 (31%), Gaps = 13/121 (10%)
Query: 293 PPVILFGPANQTLPLRSEARLRCQVRG----EGSVQWWRGEREVGSGPRVNV--TGDGS- 345
P + ++ L C V +Q + +++ ++ + D S
Sbjct: 31 PQIQVYS--RHPPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSF 88
Query: 346 --LVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTK 403
L T+ T ++ Y C VK H S + ++ ++ G +
Sbjct: 89 YILAHTEFTPTETDTYACRVK--HASMAEPKTVYWDRDMGGGGSGGGGSGGGGSGGGGSG 146
Query: 404 P 404
P
Sbjct: 147 P 147
>1onq_A T-cell surface glycoprotein CD1A; protein-glycolipid complex, beta
sheet platform,, immune SYS; HET: NAG FUC SLF; 2.15A
{Homo sapiens} SCOP: b.1.1.2 d.19.1.1 PDB: 1xz0_A*
Length = 283
Score = 34.5 bits (80), Expect = 0.15
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 9/64 (14%)
Query: 310 EARLRCQVRG----EGSVQWWRGEREVGSGPRVNV--TGDGSL---VLTDVTKEDSGEYT 360
+L C V G V W RGE+E R ++ + DG+ +V ++ + +
Sbjct: 201 HLQLVCHVSGFYPKPVWVMWMRGEQEQQGTQRGDILPSADGTWYLRATLEVAAGEAADLS 260
Query: 361 CVVK 364
C VK
Sbjct: 261 CRVK 264
>2h26_A CD1B antigen, T-cell surface glycoprotein CD1B; lipid, endogenous
ligand, phosphatidylcholine, MHC, antigen presentation,
immune system; HET: NAG FUC 6PL 6UL; 1.80A {Homo
sapiens} SCOP: b.1.1.2 d.19.1.1 PDB: 3t8x_A* 1gzq_A*
1gzp_A* 1uqs_A* 3l9r_A*
Length = 286
Score = 34.1 bits (79), Expect = 0.17
Identities = 15/64 (23%), Positives = 24/64 (37%), Gaps = 9/64 (14%)
Query: 310 EARLRCQVRG----EGSVQWWRGEREVGSGPRVNV--TGDGSL---VLTDVTKEDSGEYT 360
+L C V G V W RGE+E ++ + + DV ++ +
Sbjct: 201 RLQLVCHVSGFYPKPVWVMWMRGEQEQQGTQLGDILPNANWTWYLRATLDVADGEAAGLS 260
Query: 361 CVVK 364
C VK
Sbjct: 261 CRVK 264
>3huj_A R3G1, T-cell surface glycoprotein CD1D; CD1D,
alpha-galactosylceramide, protein complex, cell
membrane, disulfide bond, endosome; HET: NDG BMA NAG
AGH; 2.50A {Homo sapiens} PDB: 2po6_A* 3u0p_A* 3sdx_A*
1zt4_A* 3tzv_C*
Length = 284
Score = 34.1 bits (79), Expect = 0.17
Identities = 17/68 (25%), Positives = 25/68 (36%), Gaps = 9/68 (13%)
Query: 306 PLRSEARLRCQVRG----EGSVQWWRGEREVGSGPRVNV--TGDGSL---VLTDVTKEDS 356
P L C V G V+W RGE+E ++ D + DV ++
Sbjct: 198 PGPGRLLLVCHVSGFYPKPVWVKWMRGEQEQQGTQPGDILPNADETWYLRATLDVVAGEA 257
Query: 357 GEYTCVVK 364
+C VK
Sbjct: 258 AGLSCRVK 265
>3c6l_A TCR 2W20 alpha chain; TCR-PMHC complex; 3.40A {Mus musculus} SCOP:
b.1.1.1 b.1.1.2
Length = 185
Score = 33.3 bits (76), Expect = 0.19
Identities = 19/120 (15%), Positives = 34/120 (28%), Gaps = 18/120 (15%)
Query: 330 REVGSGPRVNVTGDG-----SLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNP 384
R + + SL + D DS Y C L + P
Sbjct: 53 SNKKEDGRFTIFFNKREKKFSLHIADSQPGDSATYFCAASDNRIFFGDGTQLVVK----P 108
Query: 385 NIGFFRAPEPSTYP--GPPTKPTLV----NQTANGLTLAWSRNNQIGSSSLLGYQVEMYS 438
NI + PEP+ Y P ++ + + + + + + + M S
Sbjct: 109 NI---QNPEPAVYQLKDPRSQDSTLCLFTDFDSQINVPKTMESGTFITDKTVLDMKAMDS 165
Score = 31.4 bits (71), Expect = 1.0
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 152 SLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQ 186
SL ++D + D+ Y C A + L V+
Sbjct: 73 SLHIADSQPGDSATYFCAASDNRIFFGDGTQLVVK 107
>2q86_A Valpha14 TCR; INKT cells, TCR, glycolipid recognition, innate
immunity, IM system; HET: NAG BMA MAN FUC; 1.85A {Mus
musculus} PDB: 3quy_C* 3o9w_C* 3qux_C* 3o8x_C* 3quz_C*
3rtq_C* 3rzc_C* 3ta3_C* 3tvm_C* 3qi9_C* 3ard_C* 3are_C*
3arf_C* 3arg_C* 3he6_C* 3he7_C* 3arb_C* 3scm_C* 3sda_C*
3sdc_C* ...
Length = 229
Score = 33.5 bits (76), Expect = 0.22
Identities = 27/167 (16%), Positives = 56/167 (33%), Gaps = 35/167 (20%)
Query: 300 PANQTLPLRSEARLRC--QVRGEGSVQWWR--------------GEREVGSGPRVNVTGD 343
P + + L+C V + ++W++ +++ S R + T D
Sbjct: 8 PQSLVVRQGENCVLQCNYSVTPDNHLRWYKQDTGKGLVLLTVLVDQKDKTSNGRYSATLD 67
Query: 344 G-----SLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIG-FFRAPEPSTY 397
+L +T +D+ Y CVV S F S T + + + PEP+ Y
Sbjct: 68 KDAKHSTLHITATLLDDTATYFCVVG-------DRGSALFGSGTQLIVIPYIQNPEPAVY 120
Query: 398 P--GPPTKPTLV----NQTANGLTLAWSRNNQIGSSSLLGYQVEMYS 438
P ++ + + + + + + + M S
Sbjct: 121 QLKDPRSQDSTLCLFTDFDSQINVPKTMESGTFITDKCVLDMKAMDS 167
>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D,
mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo
sapiens}
Length = 253
Score = 33.7 bits (77), Expect = 0.24
Identities = 36/157 (22%), Positives = 51/157 (32%), Gaps = 34/157 (21%)
Query: 283 LTVSGPDPN--PPPVILFGPANQTLPLRSEARLRCQVRG----EGSVQWWRGEREVGSGP 336
LTV N PP V +F P+ + +A L C G + WW +EV SG
Sbjct: 112 LTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSG- 170
Query: 337 RVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRF-----ESPTNP---NIGF 388
V TD + S+ LR ++P N + F
Sbjct: 171 ----------VSTDPQPLKEQ-----PALNDSRYALSSRLRVSATFWQNPRNHFRCQVQF 215
Query: 389 FRAPEPSTYPGPPTKPTLVNQTANGLTLAWSRNNQIG 425
+ E + KP +A AW R +Q
Sbjct: 216 YGLSENDEWTQDRAKPVTQIVSAE----AWGRADQDR 248
>1uc6_A CNTF receptor, ciliary neurotrophic factor receptor alpha;
cytokine, leukemia inhibitory factor, cytokine receptor;
NMR {Homo sapiens} SCOP: b.1.2.1
Length = 109
Score = 31.9 bits (72), Expect = 0.25
Identities = 15/80 (18%), Positives = 29/80 (36%), Gaps = 3/80 (3%)
Query: 650 PVLLNATSVLLKWKPPP-VGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTNLSA 708
PV N + + W+ P + + ++ +S T +T+ A
Sbjct: 18 PVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLILDQWQHVELSNGT-AHTITDAYA 76
Query: 709 GIRYSVSLAATNRAGTGPYS 728
G Y + +AA + G +S
Sbjct: 77 GKEYIIQVAAKDN-EIGTWS 95
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.1 bits (77), Expect = 0.28
Identities = 18/98 (18%), Positives = 32/98 (32%), Gaps = 27/98 (27%)
Query: 65 IQDSRKTDDGRYQCV-VKNVAGTRESTDAVLRVLVKPYIIRG--------PKDTTVSASS 115
I+D T D ++ V + ES+ L VL +P R P +
Sbjct: 337 IRDGLATWD-NWKHVNCDKLTTIIESS---LNVL-EPAEYRKMFDRLSVFPPSAHIPT-- 389
Query: 116 IIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSL 153
+L++ W + + ++ L SL
Sbjct: 390 -----------ILLSLIWFDVIKSDVMVVVNKLHKYSL 416
>3o3u_N Maltose-binding periplasmic protein, advanced Gly END
product-specific receptor; RAGE, AGER, scavenger
receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3cjj_A
2l7u_A* 2e5e_A
Length = 581
Score = 33.8 bits (77), Expect = 0.32
Identities = 27/146 (18%), Positives = 51/146 (34%), Gaps = 14/146 (9%)
Query: 13 KSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFEN----------SKRLRLVDGTN 62
++ G+ +L+C P L WK N + R++ +
Sbjct: 374 QNITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLPNGS 433
Query: 63 LAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLV---KPYIIRGPKDTTVSASSIIVF 119
L + D+G ++C N G ++ +RV KP I+ + T + +
Sbjct: 434 LFLPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQIPGKPEIVDSASELTAGVPNKVGT 493
Query: 120 ECSVGGDAVLTVHWKRLGSAM-PEDR 144
S G T+ W G + P ++
Sbjct: 494 CVSEGSYPAGTLSWHLDGKPLVPNEK 519
>2qrt_A H-2KB, H-2 class I histocompatibility antigen K-B alpha chain,
beta-2 microglobulin, ovalbumin-derived...; MHC-I,
single chain MHC-I, glycoprotein; 1.80A {Mus musculus}
PDB: 2qrs_A 2qri_A
Length = 422
Score = 33.6 bits (77), Expect = 0.32
Identities = 17/120 (14%), Positives = 36/120 (30%), Gaps = 14/120 (11%)
Query: 292 PPPVILFGPANQTLPLRSEARLRCQVRG----EGSVQWWRGEREVGSGPRVNV--TGDGS 345
P + + L C V +Q + +++ ++ + D S
Sbjct: 28 PQIQVY---SRHPPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWS 84
Query: 346 ---LVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPT 402
L T+ T ++ Y C VK H S + ++ ++ G +
Sbjct: 85 FYILAHTEFTPTETDTYACRVK--HASMAEPKTVYWDRDMGGGGSGGGGSGGGGSGGGGS 142
>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens}
PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E
Length = 246
Score = 32.9 bits (75), Expect = 0.34
Identities = 32/153 (20%), Positives = 49/153 (32%), Gaps = 32/153 (20%)
Query: 280 RASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG----EGSVQWWRGEREVGSG 335
R ++ + PP V +F P+ + +A L C G + WW +EV SG
Sbjct: 112 RLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSG 171
Query: 336 PRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRF-----ESPTNP---NIG 387
V TD + S+ LR ++P N +
Sbjct: 172 -----------VCTDPQPLKEQ-----PALNDSRYALSSRLRVSATFWQNPRNHFRCQVQ 215
Query: 388 FFRAPEPSTYPGPPTKPTLVNQTANGLTLAWSR 420
F+ E + KP +A AW R
Sbjct: 216 FYGLSENDEWTQDRAKPVTQIVSAE----AWGR 244
>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor,
immune system/receptor/complex, TCR, MHC,
immunodominance, FLU, complex; 1.40A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E
2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D*
3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E
3kxf_E 2cde_B ...
Length = 252
Score = 33.1 bits (75), Expect = 0.35
Identities = 35/153 (22%), Positives = 53/153 (34%), Gaps = 32/153 (20%)
Query: 283 LTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG----EGSVQWWRGEREVGSGPRV 338
+T + PP V +F P+ + +A L C G + WW +EV SG
Sbjct: 113 VTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSG--- 169
Query: 339 NVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRF-----ESPTNP---NIGFFR 390
V+ D + D Y S S+ LR ++P N + F+
Sbjct: 170 -VSTDPQPLKEQPALND-SRY-----------SLSSRLRVSATFWQNPRNHFRCQVQFYG 216
Query: 391 APEPSTYPGPPTKPTLVNQTANGLTLAWSRNNQ 423
E + KP +A AW R +Q
Sbjct: 217 LSENDEWTQDRAKPVTQIVSAE----AWGRADQ 245
>1hkf_A NKP44, NK cell activating receptor; natural cytotoxicity receptor,
immunoglobulin domain; 2.2A {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 31.5 bits (71), Expect = 0.38
Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 5/45 (11%)
Query: 327 RGEREVGSGPRVNVTGDG-----SLVLTDVTKEDSGEYTCVVKSP 366
R + R + D ++ +TD+ +EDSG Y C + P
Sbjct: 62 SKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREEDSGHYWCRIYRP 106
>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich,
structural genomics, PSI, protein structure initiative;
1.80A {Mus musculus} SCOP: b.1.1.4
Length = 122
Score = 31.8 bits (71), Expect = 0.42
Identities = 15/91 (16%), Positives = 25/91 (27%), Gaps = 9/91 (9%)
Query: 15 QRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN---------LAI 65
G+ +EC P + W K+ I +L L
Sbjct: 24 HSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHF 83
Query: 66 QDSRKTDDGRYQCVVKNVAGTRESTDAVLRV 96
+ +D+G Y C + S + V
Sbjct: 84 KPIHLSDNGSYSCSTNFNSQVINSHSVTIHV 114
>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus
musculus} PDB: 2qhr_L 3ffd_B 4dcq_A
Length = 218
Score = 32.7 bits (75), Expect = 0.43
Identities = 15/83 (18%), Positives = 31/83 (37%), Gaps = 16/83 (19%)
Query: 282 SLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG----EGSVQWWRGEREVGSGPR 337
+TV G + P + +F P+++ L ++A L C + +V W + G
Sbjct: 111 KVTVLGQPKSTPTLTVFPPSSEELK-ENKATLVCLISNFSPSGVTVAWKANGTPITQG-- 167
Query: 338 VNVTGDGSLVLTDVTKEDSGEYT 360
V T ++ ++
Sbjct: 168 ---------VDTSNPTKEGNKFM 181
Score = 28.8 bits (65), Expect = 6.4
Identities = 21/121 (17%), Positives = 36/121 (29%), Gaps = 19/121 (15%)
Query: 341 TGDGS-----LVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPS 395
+G S L ++++ ED Y C + F T + P+
Sbjct: 67 SGSSSGADRYLSISNIQPEDEAIYIC--GVGDTIKEQFVYV-FGGGTKVTVLGQPKSTPT 123
Query: 396 TYPGPPTKPTLVNQTA-----------NGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSS 444
PP+ L A +G+T+AW N + + +S
Sbjct: 124 LTVFPPSSEELKENKATLVCLISNFSPSGVTVAWKANGTPITQGVDTSNPTKEGNKFMAS 183
Query: 445 S 445
S
Sbjct: 184 S 184
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP;
transcription, beta-propeller; HET: PGE PG4 MES 2PE;
2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Length = 795
Score = 33.4 bits (77), Expect = 0.46
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 455 WVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIV 501
W + + ++ +NL G TY FLV+A NS G P P + EI+
Sbjct: 737 WYYLTDS---RTVSYSNLPQG-TYQFLVKAANSDGKWNPIPTALEII 779
>2nms_A CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP44-like, myeloid
IG-like receptor, inhibitory receptor, myelo-monocytic
cells; 2.60A {Homo sapiens}
Length = 124
Score = 31.4 bits (71), Expect = 0.49
Identities = 11/45 (24%), Positives = 21/45 (46%)
Query: 152 SLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAPIVRERPS 196
++ + D+ DA Y C E + + +T+ AP+ +E S
Sbjct: 76 TVTMEDLMKTDADTYWCGIEKTGNDLGVTVQVTIDPAPVTQEETS 120
Score = 30.7 bits (69), Expect = 0.93
Identities = 13/86 (15%), Positives = 28/86 (32%), Gaps = 17/86 (19%)
Query: 325 WWRGEREVGSGPRVNVTGDG-----SLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFE 379
G + RV++ + ++ + D+ K D+ Y C ++ + + +
Sbjct: 51 KTSGSEQEVKRDRVSIKDNQKNRTFTVTMEDLMKTDADTYWCGIEKTGNDLGVTVQVTID 110
Query: 380 SPTNPNIGFFRAPEPSTYPGPPTKPT 405
P P T + PT
Sbjct: 111 ------------PAPVTQEETSSSPT 124
Score = 28.0 bits (62), Expect = 6.7
Identities = 18/123 (14%), Positives = 35/123 (28%), Gaps = 26/123 (21%)
Query: 11 QPKSQRVAAGDTALLEC---------------GPPRGHPEPTLVWKKNGHPIDFENSKRL 55
P + + ++C G + LV + +
Sbjct: 8 GPTTVNGLERGSLTVQCVYRSGWETYLKWWCRGAIWRDCK-ILVKTSGSEQEVKRDRVSI 66
Query: 56 RLVDGTN---LAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVS 112
+ + ++D KTD Y C ++ + D + V V I P +
Sbjct: 67 KDNQKNRTFTVTMEDLMKTDADTYWCGIE-----KTGNDLGVTVQVT--IDPAPVTQEET 119
Query: 113 ASS 115
+SS
Sbjct: 120 SSS 122
>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor,
structural genomics, PSI, protein structure initiative;
2.10A {Mus musculus}
Length = 113
Score = 31.2 bits (71), Expect = 0.52
Identities = 11/53 (20%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
Query: 142 EDRMSVLPSR-----SLQLSDVRLEDAGEYVCEAENAVGKISASATLTVQMAP 189
++R+S+ ++ ++ + D+R+ DAG Y C T+ + P
Sbjct: 60 KNRVSIRDNQRDFIFTVTMEDLRMSDAGIYWCGITKGGLDPMFKVTVNIGPVP 112
Score = 28.9 bits (65), Expect = 2.7
Identities = 7/45 (15%), Positives = 18/45 (40%), Gaps = 5/45 (11%)
Query: 327 RGEREVGSGPRVNVTGDG-----SLVLTDVTKEDSGEYTCVVKSP 366
++ RV++ + ++ + D+ D+G Y C +
Sbjct: 52 DASEQLVKKNRVSIRDNQRDFIFTVTMEDLRMSDAGIYWCGITKG 96
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase,
periplasm, beta-helix, glycosidase, EXO-activity; HET:
AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A*
Length = 608
Score = 33.0 bits (75), Expect = 0.54
Identities = 23/131 (17%), Positives = 41/131 (31%), Gaps = 16/131 (12%)
Query: 393 EPSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTAT 452
P PTL + + L W + ++ YQ+ + L +S + D +
Sbjct: 33 SSLDAPQQLQVPTL-AYDESSIVLVW--KAPEDTRKIVDYQIFSAGKLLGKASDNNDNFS 89
Query: 453 AT-----------WVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIV 501
+ TV L +Y F V+A + G + S S I
Sbjct: 90 PAKPYIDHFYVNDKDNFQHKIVMQNFTVIGLKPETSYQFTVKAQYADG--SLSVASKPIT 147
Query: 502 LRGTFSEGIFS 512
+ + I +
Sbjct: 148 AKTSAKPQIVN 158
>2i24_N NEW antigen receptor PBLA8; immunoglobulin fold, immune system;
1.35A {Ginglymostoma cirratum} PDB: 2i25_N 2i27_N 2i26_N
Length = 121
Score = 31.1 bits (71), Expect = 0.55
Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 19/85 (22%)
Query: 311 ARLRCQVRG----EGSVQWWRGEREVGSGPRVNVTGDG-------------SLVLTDVTK 353
+ C VR + W+R GS +++ G SL + D+T
Sbjct: 18 LTINCVVRDSRCVLSTGYWYRKPP--GSRNEESISDGGRYVETVNRGSKSFSLRINDLTV 75
Query: 354 EDSGEYTCVVKSPHGSASWSASLRF 378
+DSG Y C +S +GS +
Sbjct: 76 KDSGTYRCKPESRYGSYDAVCAALN 100
Score = 30.0 bits (68), Expect = 1.3
Identities = 10/26 (38%), Positives = 19/26 (73%)
Query: 150 SRSLQLSDVRLEDAGEYVCEAENAVG 175
S SL+++D+ ++D+G Y C+ E+ G
Sbjct: 65 SFSLRINDLTVKDSGTYRCKPESRYG 90
>3g9v_A Interleukin 22 receptor, alpha 2; cytokine, cytokine receptor,
receptor, glycoprotein, polymorphism, secreted,
cytokine/cytokine receptor complex; 2.76A {Homo sapiens}
Length = 211
Score = 32.1 bits (72), Expect = 0.57
Identities = 11/74 (14%), Positives = 21/74 (28%), Gaps = 2/74 (2%)
Query: 656 TSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTLLLTN--LSAGIRYS 713
+L+W+P T N + Q + G + LT+ Y
Sbjct: 21 FHNILQWQPGRALTGNSSVYFVQYKIYGQRQWKNKEDCWGTQELSCDLTSETSDIQEPYY 80
Query: 714 VSLAATNRAGTGPY 727
+ A + +
Sbjct: 81 GRVRAASAGSYSEW 94
Score = 30.9 bits (69), Expect = 1.6
Identities = 33/197 (16%), Positives = 56/197 (28%), Gaps = 39/197 (19%)
Query: 316 QVRGEGSVQWWRGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSAS 375
Q + G QW E G T + S LT T + Y V++ +
Sbjct: 43 QYKIYGQRQWKNKEDCWG-------TQELSCDLTSETSDIQEPYYGRVRAASAGS----- 90
Query: 376 LRFESPTNPNIGFFRAPEPSTYPGPPTKPTLVNQTANGLTL----AWSRNNQIGSSSL-- 429
S + F P T PP + + L R + + S+
Sbjct: 91 ---YSEWSMTPRFT--PWWETKIDPPVMNITQVNGSLLVILHAPNLPYRYQKEKNVSIED 145
Query: 430 ---LGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPSPILTVTNLTVGLTYTFLVRALN 486
L Y+V + + + +V + + LT +Y +
Sbjct: 146 YYELLYRVFII-----------NNSLEKEQKV-YEGAHRAVEIEALTPHSSYCVVAEIYQ 193
Query: 487 SHGLSAPSPLSDEIVLR 503
L S S+E +
Sbjct: 194 P-MLDRRSQRSEERCVE 209
Score = 30.1 bits (67), Expect = 2.3
Identities = 16/115 (13%), Positives = 28/115 (24%), Gaps = 9/115 (7%)
Query: 391 APEPSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDT 450
+ + P + ++ + L W + + Y V+
Sbjct: 1 GTQSTHESLKPQRVQFQSRNFH-NILQWQPGRA-LTGNSSVYFVQY------KIYGQRQW 52
Query: 451 ATATWVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIVLRGT 505
T S LT + Y VRA ++ S S T
Sbjct: 53 KNKEDC-WGTQELSCDLTSETSDIQEPYYGRVRAASAGSYSEWSMTPRFTPWWET 106
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid
(ONE-component...; beta-propeller, beta-sandwich; 3.30A
{Bacteroides thetaiotaomicron}
Length = 781
Score = 32.7 bits (75), Expect = 0.62
Identities = 11/47 (23%), Positives = 17/47 (36%), Gaps = 4/47 (8%)
Query: 455 WVRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDEIV 501
W + +T N+ G Y FLV+A + + S I
Sbjct: 731 WYTINEQ---NSVTFRNIPPG-KYEFLVKARLHNQDWSEDTTSLRIH 773
>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C
region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC;
2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2
b.1.1.2
Length = 444
Score = 32.6 bits (74), Expect = 0.63
Identities = 21/111 (18%), Positives = 37/111 (33%), Gaps = 13/111 (11%)
Query: 268 CLGVNAAGSDLARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG----EGSV 323
C N +++ P V + P + + + + L C V + V
Sbjct: 322 CKVNNKDLPAPIERTISKPKGSVRAPQVYVLPPPEEEM-TKKQVTLTCMVTDFMPEDIYV 380
Query: 324 QWWR-GEREVGSGPRVNVT-GDGSLVLT---DVTKED--SGE-YTCVVKSP 366
+W G+ E+ V DGS + V K++ Y+C V
Sbjct: 381 EWTNNGKTELNYKNTEPVLDSDGSYFMYSKLRVEKKNWVERNSYSCSVVHE 431
Score = 31.8 bits (72), Expect = 1.0
Identities = 29/129 (22%), Positives = 38/129 (29%), Gaps = 10/129 (7%)
Query: 282 SLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG----EGSVQWWRGEREVGSGPR 337
++TVS P V P S L C V+G ++ W G G
Sbjct: 113 TVTVSSAKTTAPSVYPLAPVCGDTT-GSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTF 171
Query: 338 VNVTGDG-----SLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAP 392
V S V + S TC V P S + PT + P
Sbjct: 172 PAVLQSDLYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIEPRGPTIKPCPPCKCP 231
Query: 393 EPSTYPGPP 401
P+ GP
Sbjct: 232 APNLLGGPS 240
>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II,
MEM receptor, molecular mimicry, multiple sclerosis,
immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo
sapiens}
Length = 279
Score = 32.2 bits (73), Expect = 0.67
Identities = 36/156 (23%), Positives = 56/156 (35%), Gaps = 32/156 (20%)
Query: 280 RASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG----EGSVQWWRGEREVGSG 335
R ++T + PP V +F P+ + +A L C G + WW +EV SG
Sbjct: 137 RLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSG 196
Query: 336 PRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRF-----ESPTNP---NIG 387
V+ D L + + Y S S+ LR ++P N +
Sbjct: 197 ----VSTDPQ-PLKEQPALNDSRY-----------SLSSRLRVSATFWQNPRNHFRCQVQ 240
Query: 388 FFRAPEPSTYPGPPTKPTLVNQTANGLTLAWSRNNQ 423
F+ E + KP +A AW R+ Q
Sbjct: 241 FYGLSENDEWTQDRAKPVTQIVSAE----AWGRSRQ 272
>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex,
immunoglobulin fold, immune receptor, membr immune
system; HET: NAG; 2.55A {Homo sapiens}
Length = 268
Score = 32.3 bits (73), Expect = 0.67
Identities = 32/184 (17%), Positives = 52/184 (28%), Gaps = 24/184 (13%)
Query: 226 GNRSLIYPGDRVDNIQAEITSDGMNLLKIQNVSRTAAPLIILCLGVNAAGSDLARASLTV 285
G + G D A ++ LKIQ R + + + +
Sbjct: 76 GTGAADDSGLPNDRFFAVRPEGSVSTLKIQRTERGDSAVYLCATSALGDTQYFGPGTRLT 135
Query: 286 SGPDPN---PPPVILFGPANQTLPLRSEARLRCQVRG----EGSVQWWRGEREVGSG--- 335
D PP V +F P+ + +A L C G + WW +EV SG
Sbjct: 136 VLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCT 195
Query: 336 ---------PRVNVTGDGSLVLTDVTKED----SGEYTCVVKSPHGSASWSASLRFESPT 382
+ S L V+ + C V+ S + + P
Sbjct: 196 DPQPLKEQPALNDSRYSLSSRLR-VSATFWQNPRNHFRCQVQFYGLSENDEWTQDRAKPV 254
Query: 383 NPNI 386
+
Sbjct: 255 TQIV 258
>2coq_A NEW antigen receptor variable domain; IG VNAR, natural TYPE2,
immune system; 2.10A {Orectolobus maculatus}
Length = 108
Score = 30.7 bits (70), Expect = 0.69
Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 23/77 (29%)
Query: 131 VHW--KRLGSAMPEDRMSVLPSR------------SLQLSDVRLEDAGEYVCEAENAVGK 176
+W +LGS E +S+ R SL + D+R+ED+G Y C+A
Sbjct: 34 TNWYRTKLGST-KEQTISI-GGRYSETVDEGSNSASLTIRDLRVEDSGTYKCKAYRRCAF 91
Query: 177 ISASA-------TLTVQ 186
+ LTV+
Sbjct: 92 NTGVGYKEGAGTVLTVK 108
>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse
IGG, zinc-finger, DNA-binding, RNA-binding, tripartite
motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus
musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A
Length = 207
Score = 31.8 bits (72), Expect = 0.85
Identities = 25/157 (15%), Positives = 40/157 (25%), Gaps = 34/157 (21%)
Query: 293 PPVILFGPAN-QTLPLRSEARLRCQVRGEGS------VQWWRGEREV--------GSGPR 337
V +F P L + ++ C V W+ + EV
Sbjct: 2 SSVFIFPPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFN 61
Query: 338 VNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTY 397
L + + E+ C V S A ++ R P Y
Sbjct: 62 STFRSVSELPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTK--------GRPKAPQVY 113
Query: 398 PGPPTKPTLVNQTAN-----------GLTLAWSRNNQ 423
PP K + + +T+ W N Q
Sbjct: 114 TLPPPKEQMAKDKVSLTCMITDFFPEDITVEWESNGQ 150
>2ywz_A NEW antigen receptor variable domain; IG VNAR, immune system; 2.21A
{Orectolobus maculatus} PDB: 2ywy_A
Length = 111
Score = 30.4 bits (69), Expect = 0.85
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 26/81 (32%)
Query: 130 TVHW--KRLGSAMPEDRMSVLPSR------------SLQLSDVRLEDAGEYVCEAENAVG 175
+ W +LGS E +S+ R SL++SD+R+ED+G Y C+A+ +
Sbjct: 33 STTWYRTQLGST-NEKTISI-GGRYDETVDKGSKSFSLRISDLRVEDSGTYKCQADYSPS 90
Query: 176 KISASA----------TLTVQ 186
S + LTV+
Sbjct: 91 CYSYPSLESAVEGAGTVLTVK 111
Score = 27.7 bits (62), Expect = 7.5
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 11/68 (16%)
Query: 319 GEGSVQWWR---G---EREVGSGPRVNVTGDG-----SLVLTDVTKEDSGEYTCVVKSPH 367
G S W+R G E+ + G R + T D SL ++D+ EDSG Y C
Sbjct: 30 GLSSTTWYRTQLGSTNEKTISIGGRYDETVDKGSKSFSLRISDLRVEDSGTYKCQADYSP 89
Query: 368 GSASWSAS 375
S+ +
Sbjct: 90 SCYSYPSL 97
>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A
{Mus musculus}
Length = 270
Score = 31.9 bits (72), Expect = 0.96
Identities = 22/127 (17%), Positives = 37/127 (29%), Gaps = 21/127 (16%)
Query: 280 RASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVR----GEGSVQWWRGEREVGSG 335
R + + PP V +F P+ + +A L C + WW +EV SG
Sbjct: 136 RLLVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSG 195
Query: 336 ------------PRVNVTGDGSLVLTDVTKED----SGEYTCVVKSPHGSASWSASLRFE 379
+ S L V+ + C V+ S + +
Sbjct: 196 VCTDPQPLKEQPALNDSRYALSSRLR-VSATFWQNPRNHFRCQVQFYGLSENDEWTQDRA 254
Query: 380 SPTNPNI 386
P +
Sbjct: 255 KPVTQIV 261
>3arx_A Chitinase A; TIM barrel, inhibitor complex, glycosidase, hydrolase,
hydro hydrolase inhibitor complex; HET: POY; 1.16A
{Vibrio harveyi} PDB: 3aro_A* 3arp_A* 3arr_A* 3arv_A*
3arw_A* 3arq_A* 3ary_A* 3arz_A* 3b8s_A 3b9e_A 3b9a_A*
3b9d_A 3as2_A* 3ars_A* 3art_A* 3as0_A* 3as1_A* 3aru_A*
3as3_A*
Length = 584
Score = 32.2 bits (73), Expect = 1.1
Identities = 20/106 (18%), Positives = 34/106 (32%), Gaps = 9/106 (8%)
Query: 401 PTKPTLVNQTANGLTLAWSRNNQIGSSS--LLGYQVEMYSRPLP---SSSPSGDTATATW 455
PT P++ +N L + +S + E+ + S SGDT +
Sbjct: 2 PTAPSIDMYGSNNLQFSKIELAMETTSGYNDMVKYHELAKIKVKFNQWSGTSGDTYNVYF 61
Query: 456 ----VRVATNVPSPILTVTNLTVGLTYTFLVRALNSHGLSAPSPLS 497
V S G Y + A ++ G S +P+
Sbjct: 62 DGVKVATGAITGSQTTASFEYGQGGLYQMEIEACDATGCSKSAPVE 107
>1s7q_A H-2KB, H-2 class I histocompatibility antigen, K-B alpha chain;
LCMV, MHC class I, immune escape, immune system; 1.99A
{Mus musculus} SCOP: b.1.1.2 d.19.1.1 PDB: 1s7r_A 1s7s_A
1s7t_A 1bii_A 3qul_A 1s7v_A 1s7w_A 1s7x_A 3quk_A 1s7u_A
1nez_A*
Length = 348
Score = 31.7 bits (72), Expect = 1.1
Identities = 22/91 (24%), Positives = 32/91 (35%), Gaps = 14/91 (15%)
Query: 309 SEARLRCQVRG----EGSVQWWRGEREVGSGPRVNVT---GDGSL---VLTDVTKEDSGE 358
+ LRC G + ++ W E+ + T GDG+ V
Sbjct: 197 DKVTLRCWALGFYPADITLTWQLNGEELIQDMELVETRPAGDGTFQKWASVVVPLGKEQY 256
Query: 359 YTCVVKSPHGSASWSASLRFESP--TNPNIG 387
YTC V H +LR+E P T N+
Sbjct: 257 YTCHVY--HQGLPEPLTLRWEPPPSTVSNMA 285
>1xed_A Polymeric-immunoglobulin receptor; IG-like fold, immune system;
1.90A {Homo sapiens} SCOP: b.1.1.1
Length = 117
Score = 30.2 bits (68), Expect = 1.1
Identities = 7/34 (20%), Positives = 15/34 (44%)
Query: 152 SLQLSDVRLEDAGEYVCEAENAVGKISASATLTV 185
+ ++ + +D+G Y C +S +L V
Sbjct: 76 VVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEV 109
>2gj7_F Glycoprotein E; FC receptor, low resolution, immune
system-virus-viral prote complex; HET: NAG BMA MAN GAL
FUC; 5.00A {Human herpesvirus 1} SCOP: b.1.1.1
Length = 401
Score = 31.6 bits (70), Expect = 1.2
Identities = 17/75 (22%), Positives = 21/75 (28%)
Query: 328 GEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIG 387
G R + SLV+ V + DSG YT V A AS+ P
Sbjct: 89 GLRTDFVWQERAAVVNRSLVIHGVRETDSGLYTLSVGDIKDPARQVASVVLVVQPAPVPT 148
Query: 388 FFRAPEPSTYPGPPT 402
P
Sbjct: 149 PPPTPADYDEDDNDE 163
>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG,
immune system; 2.94A {Cricetulus migratorius} PDB:
3mj9_L*
Length = 213
Score = 30.8 bits (70), Expect = 1.4
Identities = 26/109 (23%), Positives = 38/109 (34%), Gaps = 19/109 (17%)
Query: 283 LTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG----EGSVQWWRGEREVGSGPRV 338
+TV G P V LF P+++ L A L C + G + +V W + G V
Sbjct: 105 VTVLGQPNAAPSVTLFPPSSEELKTNQ-ATLVCMINGFYPADVAVTWEADGTPITQG--V 161
Query: 339 NVTGDGS----------LVLTDVTKEDSGEYTCVVKSPHGSASWSASLR 377
T L +T + + C V HG + SL
Sbjct: 162 KTTQPSKSDSKYMATSYLTMTADAWKSRNTFICKVT--HGGNTVEKSLS 208
>2o5n_A MUHV1GPM153; mouse cytomegalovirus, MHC-I-like, M145 family, MHC-IV
superfamily, alpha-beta protein, viral protein; HET: NAG
BMA NDG; 2.40A {Murid herpesvirus 1}
Length = 319
Score = 31.2 bits (69), Expect = 1.4
Identities = 16/108 (14%), Positives = 30/108 (27%), Gaps = 16/108 (14%)
Query: 314 RCQVRGEGSVQWW------RGEREVGSGPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPH 367
+CQ+ + +++ + + T V + TC + S
Sbjct: 202 QCQMTTQVPLKYHMTVWSAGRDSRAIALSADYYTDIEVASYLPVNRSQILNTTCEITSSS 261
Query: 368 GSASWSASLRFESPTNPNIGFFRAPEPSTYPGP--PTKPTLVNQTANG 413
G W+ LRF + P P +P +G
Sbjct: 262 G---WTVRLRF-----SEEMVAASKARQAQKRPLLPVEPHGFMSDEHG 301
>3bmv_A Cyclomaltodextrin glucanotransferase; glycosidase, thermostable,
family 13 glycosyl hydrolas; 1.60A
{Thermoanaerobacterium thermosulfurigenorganism_taxid}
SCOP: b.1.18.2 b.3.1.1 b.71.1.1 c.1.8.1 PDB: 3bmw_A*
1ciu_A 1a47_A 1pj9_A* 1cgt_A
Length = 683
Score = 31.7 bits (72), Expect = 1.5
Identities = 24/124 (19%), Positives = 41/124 (33%), Gaps = 7/124 (5%)
Query: 282 SLTVSGPDPNPPPVILFGPANQT------LPLRSEARLRCQVRGEGSVQWWRGEREVGSG 335
S+T V + ++ + P ++A + G G G+ GS
Sbjct: 476 SVTPFTLSAGEVAVWQYVSSSNSPLIGHVGPTMTKAGQTITIDGRGF-GTTSGQVLFGST 534
Query: 336 PRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPS 395
V+ D + V V G+Y +K+ G+ S + + N F S
Sbjct: 535 AGTIVSWDDTEVKVKVPSVTPGKYNISLKTSSGATSNTYNNINILTGNQICVRFVVNNAS 594
Query: 396 TYPG 399
T G
Sbjct: 595 TVYG 598
>1axi_B HGHBP, growth hormone receptor; complex (hormone-receptor), complex
(hormone-receptor) compl; 2.10A {Homo sapiens} SCOP:
b.1.2.1 b.1.2.1 PDB: 1a22_B 1kf9_B 1hwg_B 1hwh_B 3hhr_B
2aew_A
Length = 236
Score = 30.9 bits (69), Expect = 1.5
Identities = 21/130 (16%), Positives = 45/130 (34%), Gaps = 5/130 (3%)
Query: 602 FLVTGLAHYSRYEFFLVPFFGSVDGKPSNL-RAVRTLECEPSGVPQLTDPVLLNATSVLL 660
F + + Y L G+VD K ++ V+ L + + +
Sbjct: 96 FNSSFTSIAIPYCIKLTSNGGTVDEKCFSVDEIVQPDPPIALNWTLLNVSLTGIHADIQV 155
Query: 661 KWKPPP-VGTHNGVIR-TYQIIVGGGNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAA 718
+W+ P G + Y++ N + M +T ++ + +L Y V + +
Sbjct: 156 RWEAPRNADIQKGWMVLEYELQYKEVNETKWKMMDPILTT-SVPVYSLKVDKEYEVRVRS 214
Query: 719 TNRAGTGPYS 728
+ +G Y
Sbjct: 215 -KQRNSGNYG 223
Score = 29.0 bits (64), Expect = 6.1
Identities = 37/236 (15%), Positives = 68/236 (28%), Gaps = 36/236 (15%)
Query: 281 ASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRGEGSVQ-WWRGEREVGS----G 335
+ +S + V P +T +C+ + W E G+
Sbjct: 7 TAAILSRAPWSLQSVN---PGLKTNSSGEPKFTKCRSPERETFSCHWTDEVHHGTKNEGP 63
Query: 336 PRVNVTGDGSLVLTDVTKE-----DSGEYTCVVKSPHGSA--SWSASLRFESPTNPNIGF 388
++ T + T KE +GE +C S S + L T F
Sbjct: 64 IQLFYTRRNTQEWTQEWKECPDYVSAGENSCYFNSSFTSIAIPYCIKLTSNGGTVDEKCF 123
Query: 389 FRAPEPSTYPGPPTKPTLVNQTANG----LTLAWS---RNNQIGSSSLLGYQVEMYSRPL 441
P TL+N + G + + W + +L Y+++
Sbjct: 124 SVDEIVQPDPPIALNWTLLNVSLTGIHADIQVRWEAPRNADIQKGWMVLEYELQYKEV-- 181
Query: 442 PSSSPSGDTATATWVRVATNVPSPILTVTNLTVGLTYTFLVRA-LNSHGL-SAPSP 495
W ++ + + + V +L V Y VR+ + G S
Sbjct: 182 ---------NETKW-KMMDPILTTSVPVYSLKVDKEYEVRVRSKQRNSGNYGEFSE 227
>3dmm_C T-cell surface glycoprotein CD8 alpha chain; T cell CO-receptor
CD8AB MHC complex, immune response, membrane, MHC I,
phosphoprotein, transmembrane; 2.60A {Mus musculus}
Length = 166
Score = 30.4 bits (68), Expect = 1.7
Identities = 12/81 (14%), Positives = 22/81 (27%), Gaps = 7/81 (8%)
Query: 334 SGPRVNVTGDGS-----LVLTDVTKEDSGEYTCVV--KSPHGSASWSASLRFESPTNPNI 386
+ ++ + L L +KE+ G Y C V S +S L+ + T
Sbjct: 75 NSSKLFSAMRDTNNKYVLTLNKFSKENEGYYFCSVISNSVMYFSSVVPVLQKVNSTTTKP 134
Query: 387 GFFRAPEPSTYPGPPTKPTLV 407
+
Sbjct: 135 VLRTPSPVHPTGTSQPQRPED 155
>2frg_P TREM-like transcript-1; immunoglobulin-like, beta-sandwich, cell
surface receptor, triggering receptor, platelet
receptor, ITIM, immune system; 1.19A {Homo sapiens}
Length = 106
Score = 29.5 bits (66), Expect = 1.7
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 348 LTDVTKEDSGEYTCVVKSPHG 368
+ + +ED+GEY C+V G
Sbjct: 72 MVTLQEEDAGEYGCMVDGARG 92
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding
protein; 1.94A {Crocus vernus}
Length = 113
Score = 29.4 bits (66), Expect = 2.2
Identities = 14/72 (19%), Positives = 26/72 (36%), Gaps = 14/72 (19%)
Query: 318 RGEGSVQWWRGEREVGSGPRVNVTGDGSLVLTDV---------TKEDSGEYTCVVKS--- 365
+ ++ W G G + + G L +TD T G+Y +++
Sbjct: 41 GSKTNIVWESGTSGRGQHCFMRLGHSGELDITDDRLNTVFVSNTVGQEGDYVLILQINGQ 100
Query: 366 --PHGSASWSAS 375
+G A WS +
Sbjct: 101 AVVYGPAVWSTA 112
>2q87_A CMRF35-H antigen; all-beta, immunoglobulin, IG-superfamily, IG-V,
NKP44-like, natural killer cell IG-like receptor,
inhibitory receptor; 1.70A {Homo sapiens}
Length = 110
Score = 29.1 bits (65), Expect = 2.4
Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 6/58 (10%)
Query: 327 RGEREVGSGPRVNVTGDG-----SLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFE 379
+G +G RV++ ++ L ++T+ED+G Y C V +P + E
Sbjct: 47 KGSAGKRNG-RVSIRDSPANLSFTVTLENLTEEDAGTYWCGVDTPWLQDFHDPVVEVE 103
>1q8m_A Triggering receptor expressed on myeloid cells 1; V-type IG-like
domain, immunoglobulin-like, immune system receptor;
HET: GSH; 2.60A {Homo sapiens} SCOP: b.1.1.1
Length = 127
Score = 29.4 bits (66), Expect = 2.5
Identities = 7/37 (18%), Positives = 16/37 (43%), Gaps = 3/37 (8%)
Query: 152 SLQLSDVRLEDAGEYVCEAENA---VGKISASATLTV 185
+++ ++++ED+G Y C + L V
Sbjct: 82 RVRMVNLQVEDSGLYQCVIYQPPKEPHMLFDRIRLVV 118
Score = 29.4 bits (66), Expect = 2.6
Identities = 12/64 (18%), Positives = 22/64 (34%), Gaps = 13/64 (20%)
Query: 315 CQVRGEGSVQW-------WRGEREVGSGPRVNVTGDGS-----LVLTDVTKEDSGEYTCV 362
+R + + V G R+ + + + ++ EDSG Y CV
Sbjct: 41 QIIRDGEMPKTLACTERPSKNSHPVQVG-RIILEDYHDHGLLRVRMVNLQVEDSGLYQCV 99
Query: 363 VKSP 366
+ P
Sbjct: 100 IYQP 103
>3s9d_B Interferon alpha/beta receptor 2; human, type I interferons, IFNA2,
ifnar2, SUB-complex of the interferon signaling complex;
2.00A {Homo sapiens} PDB: 1n6u_A 1n6v_A 2hym_A 2ksx_B
2kz1_B 2lag_B 3se4_C* 3se3_C* 3s8w_A*
Length = 199
Score = 30.1 bits (67), Expect = 2.7
Identities = 9/41 (21%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 348 LTDVTKEDSGEYTCVVKSPHGS-ASWSASLRFESPTNPNIG 387
LTD + Y V++ G+ +S S F + +
Sbjct: 62 LTDEWRSTHEAYVTVLEGFSGNTTLFSCSHNFWLAIDMSFE 102
>4ei6_A Valpha1 XV19 type II natural killer T cell recept variable domain,
human constant...; natural killer T cell receptor,
immune system; 1.60A {Mus musculus} PDB: 4ei5_C 4elk_A
4elm_E* 3qeu_A 1ao7_D 3qdj_D 3qdg_D 3qfj_D 1qsf_D
1qse_D* 3d39_D* 3d3v_D* 3h9s_D 3pwp_D 2gj6_D 3utp_D*
3uts_D 1qrn_D 3hg1_D 3rdt_A ...
Length = 208
Score = 30.0 bits (67), Expect = 2.9
Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Query: 345 SLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIG-FFRAPEPSTYPGPPTK 403
SL + D DS Y C + +++ L F T ++ + + P+P+ Y +K
Sbjct: 74 SLHIRDSQPSDSALYFC---AASEQNNYAQGLTFGLGTRVSVFPYIQNPDPAVYQLRDSK 130
>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune
system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
b.1.1.2
Length = 344
Score = 30.2 bits (68), Expect = 3.1
Identities = 29/160 (18%), Positives = 48/160 (30%), Gaps = 16/160 (10%)
Query: 282 SLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG----EGSVQWWRGEREVGSG-- 335
+TVS P V P++++ A L C V+ +V W G G
Sbjct: 110 LVTVSSASTKGPSVFPLAPSSKSTS-GGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTF 168
Query: 336 PRVNVTGDG----SLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRA 391
P V + S+V + + Y C V H ++ + E +
Sbjct: 169 PAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVN--HKPSNTKVDKKVEPKSCDKTHTCPP 226
Query: 392 PEPSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLG 431
+ G + TL SR+ + L
Sbjct: 227 CGGGSSGGGSGGQP---REPQVYTLPPSRDELTKNQVSLT 263
>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune
system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1
b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L
2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L*
1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L*
1mfb_L* ...
Length = 212
Score = 30.0 bits (68), Expect = 3.2
Identities = 12/52 (23%), Positives = 19/52 (36%), Gaps = 10/52 (19%)
Query: 129 LTVHWKRLGSAMPEDRMSVLPSR----------SLQLSDVRLEDAGEYVCEA 170
+TV WK G+ + + PS+ L L+ E Y C+
Sbjct: 147 VTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQV 198
>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain,
human constant...; natural killer T cell receptor,
immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B
4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B
3qjh_B 3qiw_D* 3qiu_D
Length = 245
Score = 30.0 bits (67), Expect = 3.6
Identities = 32/154 (20%), Positives = 49/154 (31%), Gaps = 32/154 (20%)
Query: 279 ARASLTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG----EGSVQWWRGEREVGS 334
R ++ + PP V +F P+ + +A L C G + WW +EV S
Sbjct: 110 TRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHS 169
Query: 335 GPRVNVTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRF-----ESPTNP---NI 386
G V TD + S+ LR ++P N +
Sbjct: 170 G-----------VCTDPQ-----PLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQV 213
Query: 387 GFFRAPEPSTYPGPPTKPTLVNQTANGLTLAWSR 420
F+ E + KP +A AW R
Sbjct: 214 QFYGLSENDEWTQDRAKPVTQIVSAE----AWGR 243
>1lp9_E T-cell receptor alpha chain; immunoregulatory complex, class I
MHC:TCR CO-crystal, immune; 2.00A {Mus musculus} SCOP:
b.1.1.1 b.1.1.2 PDB: 2j8u_E 2jcc_E 2uwe_E 1nfd_A*
Length = 194
Score = 29.6 bits (66), Expect = 3.9
Identities = 17/101 (16%), Positives = 33/101 (32%), Gaps = 10/101 (9%)
Query: 345 SLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIG-FFRAPEPSTY--PGPP 401
L + DS Y C + S S L F T+ ++ + PEP+ Y P
Sbjct: 74 HLQKSSAQLSDSALYYCALFLASSSFSK---LVFGQGTSLSVVPNIQNPEPAVYQLKDPR 130
Query: 402 TKPTLV----NQTANGLTLAWSRNNQIGSSSLLGYQVEMYS 438
++ + + + + + + + M S
Sbjct: 131 SQDSTLCLFTDFDSQINVPKTMESGTFITDKTVLDMKAMDS 171
>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1
neutralizing antibody, GP120, immune system; HET: PCA
MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L*
2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A*
1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A
1mcl_A* 1mcn_A* 1mcq_A 1mcr_A ...
Length = 211
Score = 29.7 bits (67), Expect = 4.0
Identities = 25/108 (23%), Positives = 39/108 (36%), Gaps = 16/108 (14%)
Query: 283 LTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG----EGSVQWWRGEREVGSGPRV 338
LTV G P V LF P+++ L ++A L C + +V W V +G
Sbjct: 102 LTVLGQPKAAPSVTLFPPSSEELQ-ANKATLVCLISDFYPGAVTVAWKADSSPVKAGVET 160
Query: 339 NVTGDGS---------LVLTDVTKEDSGEYTCVVKSPHGSASWSASLR 377
S L LT + Y+C V H ++ ++
Sbjct: 161 TTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVT--HEGSTVEKTVA 206
>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody,
immune system; NMR {Homo sapiens}
Length = 512
Score = 30.0 bits (67), Expect = 4.3
Identities = 30/206 (14%), Positives = 52/206 (25%), Gaps = 23/206 (11%)
Query: 283 LTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG----EGSVQWWRGEREVGSG--P 336
+ VS P V + S L C + G +V W+ G + P
Sbjct: 125 VHVSSAPTKAPDVFPIISGCRHPKDNSPVVLACLITGYHPTSVTVTWYMGTQSQPQRTFP 184
Query: 337 RVNVTGDG----SLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAP 392
+ S + T + + GEY CVV+ S + I +
Sbjct: 185 EIQRRDSYYMTSSQLSTPLQQWRQGEYKCVVQHT------------ASKSKKEIFRWPES 232
Query: 393 EPSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPS-SSPSGDTA 451
+ PT + T A + G + + + +
Sbjct: 233 PKAQASSVPTAQPQAEGSLAKATTAPATTRNTGRGGEEKKKEKEKEEQEERETKTPECPS 292
Query: 452 TATWVRVATNVPSPILTVTNLTVGLT 477
+ V P+ T
Sbjct: 293 HTQPLGVYLLTPAVQDLWLRDKATFT 318
>4doh_B Interleukin-20 receptor subunit beta; IL10 family cytokine receptor
complex, alpha helical cytokin beta sandwhich receptor
fold, signaling complex; HET: NAG; 2.80A {Homo sapiens}
Length = 206
Score = 29.3 bits (65), Expect = 4.4
Identities = 17/97 (17%), Positives = 32/97 (32%), Gaps = 8/97 (8%)
Query: 656 TSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPTL-----LLTNLSAGI 710
LL W P ++ I + S + T + +++A +
Sbjct: 20 MKHLLMWSPVIAPGETVYYSVEYQGEYESLYTSHIWIPSSWCSLTEGPECDVTDDITATV 79
Query: 711 RYSVSLAATNRAGTGPYS---RPALLSLTSGPEPRLE 744
Y++ + AT + T +S P T P +E
Sbjct: 80 PYNLRVRATLGSQTSAWSILKHPFNRQSTILTRPGME 116
Score = 29.3 bits (65), Expect = 5.1
Identities = 24/105 (22%), Positives = 35/105 (33%), Gaps = 9/105 (8%)
Query: 391 APEPSTYPGPPTKPTLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDT 450
A E + P P + ++++ L WS + Y VE Y S S
Sbjct: 1 ADEVAILP-APQQLSVLSTNMK-HLLMWSPVI--APGETVYYSVE-YQGEYESLYTSHIW 55
Query: 451 ATATWVRVATNVPSPILTVT-NLTVGLTYTFLVRALNSHGLSAPS 494
+ P VT ++T + Y VRA SA S
Sbjct: 56 ---IPSSWCSLTEGPECDVTDDITATVPYNLRVRATLGSQTSAWS 97
>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex
(immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A
{Mus musculus} SCOP: b.1.1.1 b.1.1.2
Length = 212
Score = 29.2 bits (66), Expect = 4.7
Identities = 25/109 (22%), Positives = 34/109 (31%), Gaps = 19/109 (17%)
Query: 283 LTVSGPDPNPPPVILFGPANQTLPLRSEARLRCQVRG----EGSVQWWRGEREVGSGPRV 338
LTV + P V +F P+ + L A L C V +V W + G V
Sbjct: 104 LTVLRGPKSSPKVTVFPPSPEELRTNK-ATLVCLVNDFYPGSATVTWKANGATINDG--V 160
Query: 339 NVTGDGS----------LVLTDVTKEDSGEYTCVVKSPHGSASWSASLR 377
T L LT + +C V H + SL
Sbjct: 161 KTTKPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVT--HEGETVEKSLS 207
>3gsn_A RA14 TCR alpha chain (TRAV24, TRAJ49); HLA, human cytomegalovirus,
PP65, T cell receptor (TCR), immune response, public
response; 2.80A {Homo sapiens}
Length = 199
Score = 29.1 bits (65), Expect = 5.3
Identities = 20/168 (11%), Positives = 45/168 (26%), Gaps = 35/168 (20%)
Query: 300 PANQTLPLRSEARLRC--QVRGEGSVQWWR--------------GEREVGSGPRVNVTGD 343
P + + C ++ W+R + R++ T +
Sbjct: 7 PQSLHVQEGDSTNFTCSFPSSNFYALHWYRWETAKSPEALFVMTLNGDEKKKGRISATLN 66
Query: 344 GS-----LVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFES-PTNPNIGFFRAPEPSTY 397
L + EDS Y C + + F + + I + P+P+ Y
Sbjct: 67 TKEGYSYLYIKGSQPEDSATYLC-------ARNTGNQFYFGTGTSLTVIPNIQNPDPAVY 119
Query: 398 PGPPTKPT-----LVNQ-TANGLTLAWSRNNQIGSSSLLGYQVEMYSR 439
+K + L + ++ + + M +
Sbjct: 120 QLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDAYITDKTVLDMRSMDFK 167
>3p73_A MHC RFP-Y class I alpha chain; IG-like C1-type
(immunoglobulin-like) domain, histocompatibi antigen,
immune system; HET: 16A; 1.32A {Gallus gallus} PDB:
3p77_A*
Length = 275
Score = 29.1 bits (66), Expect = 6.3
Identities = 17/81 (20%), Positives = 25/81 (30%), Gaps = 12/81 (14%)
Query: 309 SEARLRCQVRG----EGSVQWWR-GEREVGSGPRVNV--TGDGSL---VLTDVTKEDSGE 358
L C G ++ W + G + DG+ DV ED +
Sbjct: 195 GILTLSCHAHGFYPRPITISWMKDGMVRDQETRWGGIVPNSDGTYHASAAIDVLPEDGDK 254
Query: 359 YTCVVKSPHGSASWSASLRFE 379
Y C V+ H S +E
Sbjct: 255 YWCRVE--HASLPQPGLFSWE 273
>3og6_B Interleukin 28 receptor, alpha (interferon, lambd receptor);
helical bundle, fibronectin type III domain,
beta-sandwich, signaling, membrane; HET: BMA NAG; 2.10A
{Homo sapiens} PDB: 3og4_B*
Length = 226
Score = 28.9 bits (64), Expect = 6.3
Identities = 23/178 (12%), Positives = 44/178 (24%), Gaps = 28/178 (15%)
Query: 348 LTDVTKEDSGE-YTCVVK--SPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKP 404
+ + K+D + V+ SP + W S + P PP
Sbjct: 66 MMCLKKQDLYNKFKGRVRTVSPSSKSPWVESEYLD------------YLFEVEPAPPVLV 113
Query: 405 TLVNQTANGLTLAWSRNNQIGSSSLLGYQVEMYSRPLPSSSPSGDTATATWVRVATNVPS 464
+ + + L Y+V + + + T
Sbjct: 114 LTQTEEILSANATYQLPPCMPPLDL-KYEVAFWKEGAGN----------KTLFPVTPHGQ 162
Query: 465 PILTVTNLTVGLTYTFLVRALNSHGLSAPSPLSDE--IVLRGTFSEGIFSEGGKGIFS 520
P+ + R + + + S S +L + S GG S
Sbjct: 163 PVQITLQPAASEHHCLSARTIYTFSVPKYSKFSKPTCFLLEVPEANASGSSGGSSGTS 220
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide
antibiotics biosynthesis, structural genomics; 2.00A
{Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Length = 299
Score = 29.1 bits (65), Expect = 6.5
Identities = 20/135 (14%), Positives = 37/135 (27%), Gaps = 14/135 (10%)
Query: 523 FPDEGRGESLRRARQHLQEGGGSLIELTEVKPMTSTSVKLTWEILNTDYIEGVYIYSRGL 582
+ R R+HL+ GG L+ L + S ++ E+ Y+
Sbjct: 164 LDEADRRGLYASVREHLEPGGKFLLSLAMSEAAESEPLERKQEL--PGRSGRRYVLHVRH 221
Query: 583 DPPASVAMLTVLHAGEASGFLVTG---LAHYSRYE---------FFLVPFFGSVDGKPSN 630
P + +T+ A E + V + + F ++ G
Sbjct: 222 LPAEEIQEITIHPADETTDPFVVCTHRRRLLAPDQVVRELVRSGFDVIAQTPFASGGAGR 281
Query: 631 LRAVRTLECEPSGVP 645
V P
Sbjct: 282 KDMVLVEAVMPGATA 296
>1smo_A Triggering receptor expressed on myeloid cells 1; activating
receptors, TREM-1, innate immune system receptor,
system; HET: TLA; 1.47A {Homo sapiens} SCOP: b.1.1.1
Length = 119
Score = 27.9 bits (62), Expect = 7.0
Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 5/35 (14%)
Query: 337 RVNVTGDGS-----LVLTDVTKEDSGEYTCVVKSP 366
R+ + + + ++ EDSG Y CV+ P
Sbjct: 64 RIILEDYHDHGLLRVRMVNLQVEDSGLYQCVIYQP 98
Score = 27.5 bits (61), Expect = 9.3
Identities = 7/41 (17%), Positives = 16/41 (39%), Gaps = 3/41 (7%)
Query: 152 SLQLSDVRLEDAGEYVCEAENA---VGKISASATLTVQMAP 189
+++ ++++ED+G Y C + L V
Sbjct: 77 RVRMVNLQVEDSGLYQCVIYQPPKEPHMLFDRIRLVVTKGF 117
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 7.1
Identities = 5/21 (23%), Positives = 11/21 (52%), Gaps = 8/21 (38%)
Query: 427 SSLLGYQVEMYSRPLPSSSPS 447
+SL ++Y+ S+P+
Sbjct: 27 ASL-----KLYA---DDSAPA 39
>1wgo_A VPS10 domain-containing receptor sorcs2; polycystic kidney disease,
PKD, structural genomics, KIAA1329 protein; NMR {Homo
sapiens} SCOP: b.1.3.1
Length = 123
Score = 27.8 bits (61), Expect = 7.1
Identities = 18/84 (21%), Positives = 30/84 (35%), Gaps = 3/84 (3%)
Query: 641 PSGVPQLTDPVLLNATSVLLKWKPPPVGTHNGVIRTYQIIVGGGNNSALINMTVSASTPT 700
P G+ + + + YQ+ +G G + +N+T++
Sbjct: 28 PRGLQVSIQGEAVAVRPGEDVLFVVRQEQGDVLTTKYQVDLGDGFKAMYVNLTLTGEPIR 87
Query: 701 LLLTNLSAGIRYSVSLAATNRAGT 724
S GI Y VS+ A N AG
Sbjct: 88 H--RYESPGI-YRVSVRAENTAGH 108
>2eys_A NKT15; natural killer T cell receptor, immune system; 2.21A {Homo
sapiens} PDB: 2eyr_A 2eyt_A 3huj_E* 3tyf_A 3tzv_A*
3sdx_E* 2po6_C* 2cde_A 3to4_C*
Length = 210
Score = 28.9 bits (64), Expect = 7.2
Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 10/57 (17%)
Query: 345 SLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRF----ESPTNPNIGFFRAPEPSTY 397
SL +T DS Y CVV + L F + P+I + P+P+ Y
Sbjct: 76 SLHITASQLSDSASYICVVSDRGSTLGR---LYFGRGTQLTVWPDI---QNPDPAVY 126
>1ntl_A CRRY-IG; immunology, complement, glycoprotein, SCR, CCP, immune
system; NMR {Mus musculus}
Length = 551
Score = 29.2 bits (65), Expect = 7.7
Identities = 30/184 (16%), Positives = 54/184 (29%), Gaps = 42/184 (22%)
Query: 290 PNPPPVILFGPANQTLPLRSEARLRCQVRG------EGSVQWWRGEREVGS---GPRVN- 339
I L + ++ C V E W+ + EV + PR
Sbjct: 340 EVSSVFIFPPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTQPREEQ 399
Query: 340 ----VTGDGSLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPS 395
L + + E+ C V S A ++ ++ P P
Sbjct: 400 FNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFPAPIEKTIS-KTKGRPK-------APQ 451
Query: 396 TYPGPPTKPTLVNQTANGLT------------LAWSRNNQIGSSSLLGYQVEMYSRPLPS 443
Y PP K + + LT + W N Q + Y+ ++P+ +
Sbjct: 452 LYTIPPPKEQMAKDKVS-LTCMITDFFPEDITVEWQWNGQPAEN----YKN---TQPIMN 503
Query: 444 SSPS 447
++ S
Sbjct: 504 TNGS 507
>1ymm_D T cell receptor alpha chain; protein-protein complex, T cell
repertoire, auto-immunity, I system; HET: NAG; 3.50A
{Homo sapiens} SCOP: b.1.1.1
Length = 207
Score = 28.5 bits (63), Expect = 8.3
Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 3/59 (5%)
Query: 345 SLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTK 403
SL++T D+ Y C + G+ + NI + P+P+ Y +K
Sbjct: 73 SLLITASRAADTASYFCATDTTSGTYKYIFGTGTRLKVLANI---QNPDPAVYQLRDSK 128
>3ecq_A Protein SPR0328, endo-alpha-N-acetylgalactosaminidase; distorted
(beta/alpha)8 (TIM) barrel glycoside hydrolase DOM WALL;
2.90A {Streptococcus pneumoniae}
Length = 1531
Score = 29.1 bits (64), Expect = 8.5
Identities = 14/89 (15%), Positives = 32/89 (35%), Gaps = 9/89 (10%)
Query: 683 GGNNSALINMTVSASTPTLLLTNLSAGIRYSVSLAATNRAGTGPYSRPALLSLTSGPEPR 742
G N+ I + T LT L +Y+V + NR+ A +++ +G
Sbjct: 1052 GANDMLRIQGNKEKVSLTQKLTGLKPNTKYAVYVGVDNRSN-----AKASITVNTGE--- 1103
Query: 743 LEDWASQSGRSRGDGTMETDLTDLTGGAW 771
++ + + +S ++ +
Sbjct: 1104 -KEVTTYTNKSLALNYVKAYAHNTRRNNA 1131
>2wy3_A MHC class I polypeptide-related sequence B; immune system-viral
protein complex, immune response, innate immunity,
structural mimicry; HET: NAG PEU; 1.80A {Homo sapiens}
PDB: 1je6_A 1hyr_C 1b3j_A*
Length = 319
Score = 28.8 bits (65), Expect = 8.5
Identities = 10/92 (10%), Positives = 25/92 (27%), Gaps = 15/92 (16%)
Query: 310 EARLRCQVRG----EGSVQWWRGEREVGSGPRVNV----TGDGSL---VLTDVTKEDSGE 358
+ C+ ++ W + + + G+G+ V T + + +
Sbjct: 198 NITVTCRASSFYPRNITLTWRQDGVSLSHNTQQWGDVLPDGNGTYQTWVATRIRQGEEQR 257
Query: 359 YTCVV----KSPHGSASWSASLRFESPTNPNI 386
+TC + L +S
Sbjct: 258 FTCYMEHSGNHGTHPVPSGKVLVLQSQRTDFP 289
>3moq_A NEW antigen receptor variable domain, P3(40) PEPT amyloid beta A4
protein; AB-ignar, AB-12Y-2, glycoprotein, membran
protease inhibitor; 2.05A {Orectolobus maculatus} PDB:
2z8w_C 2z8v_C 1ves_A 1ver_A
Length = 126
Score = 27.8 bits (62), Expect = 8.8
Identities = 19/114 (16%), Positives = 35/114 (30%), Gaps = 27/114 (23%)
Query: 311 ARLRCQVR----GEGSVQWWRGEREVGSGPRVNVTGDG-------------SLVLTDVTK 353
+ C +R W+R ++GS +++ G SL ++D+
Sbjct: 18 LTINCVLRDASFELKDTGWYR--TKLGSTNEQSISIGGRYVETVNKGSKSFSLRISDLRV 75
Query: 354 EDSGEYTCVVKSPHGSASWSASLRFESPTNPNIGFFRAPEPSTYPGPPTKPTLV 407
EDSG Y C ++ + +N G T +
Sbjct: 76 EDSGTYKC--------QAFYVFFAEDVGSNKGAIIGLMVGGVVIGGEKGAGTAL 121
>3qjh_A 5C.C7 alpha chain; immunoglobulin domain, T cell receptor, immune
system; 1.90A {Mus musculus} PDB: 3qiu_C* 3qiw_C* 3qjf_A
3qib_C 2ial_A 2iam_C 2ian_D 3rug_E* 3axl_A
Length = 205
Score = 28.5 bits (63), Expect = 9.2
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 6/60 (10%)
Query: 345 SLVLTDVTKEDSGEYTCVVKSPHGSASWSASLRFESPTNPNIG-FFRAPEPSTYPGPPTK 403
+L + D EDSG Y C AS + + F + T + + P+P+ Y +K
Sbjct: 73 TLHIRDAQLEDSGTYFCAA-----EASNTNKVVFGTGTRLQVLPNIQNPDPAVYQLRDSK 127
>1xd5_A Gastrodianin-1, antifungal protein GAFP-1; monocot mannose binding
lectin, monomer, homogeneous beta- sheet; 2.00A
{Gastrodia elata} SCOP: b.78.1.1 PDB: 1xd6_A
Length = 112
Score = 27.2 bits (60), Expect = 10.0
Identities = 14/73 (19%), Positives = 23/73 (31%), Gaps = 16/73 (21%)
Query: 317 VRGEGSVQWWRGEREVGSGPRVNVTGDGSLVLTD--------VTKEDSGEYTC------- 361
+ W G SG + + DG+LV+ T +G Y
Sbjct: 33 LYDNNRAVWASGTNGKASGCVLKMQNDGNLVIYSGSRAIWASNTNRQNGNYYLILQRDRN 92
Query: 362 -VVKSPHGSASWS 373
V+ +A W+
Sbjct: 93 VVIYDNSNNAIWA 105
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.133 0.401
Gapped
Lambda K H
0.267 0.0526 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 14,965,502
Number of extensions: 938787
Number of successful extensions: 5438
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3222
Number of HSP's successfully gapped: 1353
Length of query: 977
Length of database: 6,701,793
Length adjustment: 103
Effective length of query: 874
Effective length of database: 3,825,930
Effective search space: 3343862820
Effective search space used: 3343862820
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 62 (28.1 bits)