BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5743
(644 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 648 bits (1672), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 313/579 (54%), Positives = 421/579 (72%), Gaps = 1/579 (0%)
Query: 65 ELKKLFTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKXXXXX 124
E +KL LA E+R+L AV L +SS I+M+ PF LGK+IDVIYT+ + +
Sbjct: 6 EARKLLGLAYPERRRLAAAVGFLTMSSVISMSAPFFLGKIIDVIYTNPTVDYSDNLTRLC 65
Query: 125 XXXXXVFVVGACCNFGRVYLMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELINRI 184
VF+ GA N RVYLM S Q I +LR LF SI+ QE A+FDK +TGELINR+
Sbjct: 66 LGLSAVFLCGAAANAIRVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKTRTGELINRL 125
Query: 185 SADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFXXXXXXXXXXXXXVPPVAGLAIVYGKF 244
S+DT+L+ + VT+N+SDGLR+ S G+SMMF VPPV+ +A++YG++
Sbjct: 126 SSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYGRY 185
Query: 245 VRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAK 304
+RK+T+ QD LA A Q+AEERI N+RTV++F +E E+ + +K+D + +LA+KEA A+
Sbjct: 186 LRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFAR 245
Query: 305 GVFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSEL 364
FFG TGLSGN I+LSVLY GG+++ +TVG LSSFL+YA ++GISIGGLS+FYSEL
Sbjct: 246 AGFFGATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSEL 305
Query: 365 NKGLGACHRLWEIMEREPLISTSGGKFFSH-SLKGEIDFNNIRFSYPSRPDAVILNDLSL 423
KGLGA RLWE++EREP + + G + S +G ++F N+ F+YP+RP+ I D SL
Sbjct: 306 MKGLGAGGRLWELLEREPKLPFNEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSL 365
Query: 424 KIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQ 483
I SGS+T+++G SGSGKST+ LLLRLYDP +G I +DG DI++L+P++LRS+IG+VSQ
Sbjct: 366 SIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQ 425
Query: 484 EPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLS 543
EP LFS +I ENI YG +D SSVT +I A+ ANA F+ +F GF+T+VGE+G++LS
Sbjct: 426 EPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLS 485
Query: 544 GGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTI 603
GGQKQRIAIARAL+K KILLLDEATSALDAENEYLVQ A+++L++G+TVL IAHRLSTI
Sbjct: 486 GGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTI 545
Query: 604 RKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLMKYQT 642
+ +N + VLD+GKI E G + L+ PN ++ KLM Q+
Sbjct: 546 KNANMVAVLDQGKITEYGKHEELLSKPNGIYRKLMNKQS 584
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 647 bits (1668), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 312/579 (53%), Positives = 420/579 (72%), Gaps = 1/579 (0%)
Query: 65 ELKKLFTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKXXXXX 124
E +KL LA E+R+L AV L +SS I+M+ PF LGK+IDVIYT+ + +
Sbjct: 37 EARKLLGLAYPERRRLAAAVGFLTMSSVISMSAPFFLGKIIDVIYTNPTVDYSDNLTRLC 96
Query: 125 XXXXXVFVVGACCNFGRVYLMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELINRI 184
VF+ GA N RVYLM S Q I +LR LF SI+ QE A+FDK +TGELINR+
Sbjct: 97 LGLSAVFLCGAAANAIRVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKTRTGELINRL 156
Query: 185 SADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFXXXXXXXXXXXXXVPPVAGLAIVYGKF 244
S+DT+L+ + VT+N+SDGLR+ S G+SMMF VPPV+ +A++YG++
Sbjct: 157 SSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYGRY 216
Query: 245 VRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAK 304
+RK+T+ QD LA A Q+AEERI N+RTV++F +E E+ + +K+D + +LA+KEA A+
Sbjct: 217 LRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFAR 276
Query: 305 GVFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSEL 364
FFG TGLSGN I+LSVLY GG+++ +TVG LSSFL+YA ++GISIGGLS+FYSEL
Sbjct: 277 AGFFGATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSEL 336
Query: 365 NKGLGACHRLWEIMEREPLISTSGGKFFSH-SLKGEIDFNNIRFSYPSRPDAVILNDLSL 423
KGLGA RLWE++EREP + + G + S +G ++F N+ F+YP+RP+ I D SL
Sbjct: 337 MKGLGAGGRLWELLEREPKLPFNEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSL 396
Query: 424 KIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQ 483
I SGS+T+++G SGSGKST+ LLLRLYDP +G I +DG DI++L+P++LRS+IG+VSQ
Sbjct: 397 SIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQ 456
Query: 484 EPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLS 543
EP LFS +I ENI YG +D SSVT +I A+ ANA F+ +F GF+T+VGE+G++LS
Sbjct: 457 EPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLS 516
Query: 544 GGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTI 603
GGQKQRIAIARAL+K KILLLDEATSALDAENEYLVQ A+++L++G+TVL IAH LSTI
Sbjct: 517 GGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHHLSTI 576
Query: 604 RKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLMKYQT 642
+ +N + VLD+GKI E G + L+ PN ++ KLM Q+
Sbjct: 577 KNANMVAVLDQGKITEYGKHEELLSKPNGIYRKLMNKQS 615
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 324 bits (830), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 196/493 (39%), Positives = 288/493 (58%), Gaps = 13/493 (2%)
Query: 155 KLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVS 214
K+R++ F +I++QE +FD H GEL R++ D S +++ + I ++ G
Sbjct: 142 KIRQKFFHAIMNQEIGWFDVHDVGELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFI 201
Query: 215 MMFXXXXXXXXXXXXXVPPVAGL-AIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTV 273
+ F + PV GL A ++ K + T A A VAEE ++ IRTV
Sbjct: 202 IGFTRGWKLTLVILA-ISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTV 260
Query: 274 KSFSQEKLEMSHFNAKMDDLFELAKKEALAKGVFFGFTGLSGNAIILSVLYYGGVMVSYE 333
+F +K E+ +N +++ L K+A+ + G L A +YG +V +
Sbjct: 261 IAFGGQKKELERYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISK 320
Query: 334 TITVGNLSSFLLYAAYIG-ISIGGLSNFYSELNKGLGACHRLWEIMEREPLI---STSGG 389
++G + + + ++ IG S+G S GA + +++I++ +P I S SG
Sbjct: 321 EYSIGQVLT-VFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGH 379
Query: 390 KFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLL 449
K +++G ++F NI FSYPSR + IL L+LK++SG +++G+SG GKST L+
Sbjct: 380 K--PDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQ 437
Query: 450 RLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKS 509
RLYDP +G + IDG DI+ ++ YLR IG VSQEP LF+ TI ENI YG D VT
Sbjct: 438 RLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGRED---VTMD 494
Query: 510 DIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEAT 569
+I A KEANAY F++ + FDT+VGERG LSGGQKQRIAIARAL++ KILLLDEAT
Sbjct: 495 EIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEAT 554
Query: 570 SALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKN 629
SALD E+E +VQ+A++K EG+T + IAHRLST+R ++ I D G IVE G++ L++
Sbjct: 555 SALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMRE 614
Query: 630 PNSMFNKLMKYQT 642
F KL+ QT
Sbjct: 615 KGIYF-KLVMTQT 626
Score = 291 bits (746), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 173/495 (34%), Positives = 286/495 (57%), Gaps = 12/495 (2%)
Query: 148 SAQSITKKLRERLFGSIISQETAYFD--KHKTGELINRISADTSLVSQCVTQNISDGLRS 205
+ + +TK+LR +F S++ Q+ ++FD K+ TG L R++ D + V ++ ++
Sbjct: 776 AGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQN 835
Query: 206 TVMVSAGVSMMFXXXXXXXXXXXXXVPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEE 265
+ G+ + VP +A +V K + + +L + ++A E
Sbjct: 836 IANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATE 895
Query: 266 RISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAKGVFFGFTGLSGNAIILSVLYY 325
I N RTV S ++E+ + + + + A K+A G+ F FT + +
Sbjct: 896 AIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAAAFRF 955
Query: 326 GGVMVSYETITVGNLSSFLLYAAYI--GISIGGLSNFYSELNKGLGACHRLWEIMEREPL 383
G +V+ + +T N+ L+++A + +++G +S+F + K + + I+E+ P
Sbjct: 956 GAYLVTQQLMTFENV--LLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPE 1013
Query: 384 I---STSGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSG 440
I ST G K + L+G + F+ + F+YP+RP +L LSL+++ G +++GSSG G
Sbjct: 1014 IDSYSTQGLK--PNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCG 1071
Query: 441 KSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGV 500
KST+ LL R YDP G + +DG +IK+L+ +LR+Q+G VSQEP LF +I ENI YG
Sbjct: 1072 KSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYG- 1130
Query: 501 NDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKS 560
++S V+ +I+ AAKEAN + F+ + ++T VG++G LSGGQKQRIAIARAL+++
Sbjct: 1131 DNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQP 1190
Query: 561 KILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEI 620
ILLLDEATSALD E+E +VQ A++K EG+T + IAHRLSTI+ ++ I V+ GK+ E
Sbjct: 1191 HILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEH 1250
Query: 621 GSYAHLIKNPNSMFN 635
G++ L+ F+
Sbjct: 1251 GTHQQLLAQKGIYFS 1265
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 324 bits (830), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 196/493 (39%), Positives = 288/493 (58%), Gaps = 13/493 (2%)
Query: 155 KLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVS 214
K+R++ F +I++QE +FD H GEL R++ D S +++ + I ++ G
Sbjct: 142 KIRQKFFHAIMNQEIGWFDVHDVGELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFI 201
Query: 215 MMFXXXXXXXXXXXXXVPPVAGL-AIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTV 273
+ F + PV GL A ++ K + T A A VAEE ++ IRTV
Sbjct: 202 IGFTRGWKLTLVILA-ISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTV 260
Query: 274 KSFSQEKLEMSHFNAKMDDLFELAKKEALAKGVFFGFTGLSGNAIILSVLYYGGVMVSYE 333
+F +K E+ +N +++ L K+A+ + G L A +YG +V +
Sbjct: 261 IAFGGQKKELERYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISK 320
Query: 334 TITVGNLSSFLLYAAYIG-ISIGGLSNFYSELNKGLGACHRLWEIMEREPLI---STSGG 389
++G + + + ++ IG S+G S GA + +++I++ +P I S SG
Sbjct: 321 EYSIGQVLT-VFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGH 379
Query: 390 KFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLL 449
K +++G ++F NI FSYPSR + IL L+LK++SG +++G+SG GKST L+
Sbjct: 380 K--PDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQ 437
Query: 450 RLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKS 509
RLYDP +G + IDG DI+ ++ YLR IG VSQEP LF+ TI ENI YG D VT
Sbjct: 438 RLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGRED---VTMD 494
Query: 510 DIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEAT 569
+I A KEANAY F++ + FDT+VGERG LSGGQKQRIAIARAL++ KILLLDEAT
Sbjct: 495 EIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEAT 554
Query: 570 SALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKN 629
SALD E+E +VQ+A++K EG+T + IAHRLST+R ++ I D G IVE G++ L++
Sbjct: 555 SALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMRE 614
Query: 630 PNSMFNKLMKYQT 642
F KL+ QT
Sbjct: 615 KGIYF-KLVMTQT 626
Score = 291 bits (746), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 173/495 (34%), Positives = 286/495 (57%), Gaps = 12/495 (2%)
Query: 148 SAQSITKKLRERLFGSIISQETAYFD--KHKTGELINRISADTSLVSQCVTQNISDGLRS 205
+ + +TK+LR +F S++ Q+ ++FD K+ TG L R++ D + V ++ ++
Sbjct: 776 AGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQN 835
Query: 206 TVMVSAGVSMMFXXXXXXXXXXXXXVPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEE 265
+ G+ + VP +A +V K + + +L + ++A E
Sbjct: 836 IANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATE 895
Query: 266 RISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAKGVFFGFTGLSGNAIILSVLYY 325
I N RTV S ++E+ + + + + A K+A G+ F FT + +
Sbjct: 896 AIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAACFRF 955
Query: 326 GGVMVSYETITVGNLSSFLLYAAYI--GISIGGLSNFYSELNKGLGACHRLWEIMEREPL 383
G +V+ + +T N+ L+++A + +++G +S+F + K + + I+E+ P
Sbjct: 956 GAYLVTQQLMTFENV--LLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPE 1013
Query: 384 I---STSGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSG 440
I ST G K + L+G + F+ + F+YP+RP +L LSL+++ G +++GSSG G
Sbjct: 1014 IDSYSTQGLK--PNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCG 1071
Query: 441 KSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGV 500
KST+ LL R YDP G + +DG +IK+L+ +LR+Q+G VSQEP LF +I ENI YG
Sbjct: 1072 KSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYG- 1130
Query: 501 NDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKS 560
++S V+ +I+ AAKEAN + F+ + ++T VG++G LSGGQKQRIAIARAL+++
Sbjct: 1131 DNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQP 1190
Query: 561 KILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEI 620
ILLLDEATSALD E+E +VQ A++K EG+T + IAHRLSTI+ ++ I V+ GK+ E
Sbjct: 1191 HILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEH 1250
Query: 621 GSYAHLIKNPNSMFN 635
G++ L+ F+
Sbjct: 1251 GTHQQLLAQKGIYFS 1265
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 301 bits (772), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 183/517 (35%), Positives = 300/517 (58%), Gaps = 19/517 (3%)
Query: 137 CNFGRVYLMNVSAQSITKKLRERLFGSIISQETAYFD--KHKTGELINRISADTSLVSQC 194
C+F + M ++++S+T+ LR +LF +++SQ +FD ++ +G++ R++ D +
Sbjct: 810 CSFLMTFFMGIASESLTRDLRNKLFRNVLSQHIGFFDSPQNASGKISTRLATDVPNLRTA 869
Query: 195 VTQNISDGLRSTVMVSAGVSMMFXXXXXXXXXXXXXVPPVAGLAIVYGKFVR--KIT-RN 251
+ S + + V + AG+ + F +P VA +G+++R + T +N
Sbjct: 870 IDFRFSTVITTLVSMVAGIGLAFFYGWQMALLIIAILPIVA-----FGQYLRGRRFTGKN 924
Query: 252 VQD--KLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAKGVFFG 309
V+ + A++ ++A E I N+RTV++ ++E +F K+D + A KEA +G+ +G
Sbjct: 925 VKSASEFADSGKIAIEAIENVRTVQALAREDTFYENFCEKLDIPHKEAIKEAFIQGLSYG 984
Query: 310 FTGLSGNAIILSVLYY--GGVMVSYETITVGNLSSF-LLYAAYIGIS-IGGLSNFYSELN 365
S +L+ Y G ++ + T+ + ++YA I S +G ++++ E
Sbjct: 985 CA--SSVLYLLNTCAYRMGLALIITDPPTMQPMRVLRVMYAITISTSTLGFATSYFPEYA 1042
Query: 366 KGLGACHRLWEIMEREPLISTSGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKI 425
K A ++ ++ + I + L G++ F N+RF+YP RP+ IL LS +
Sbjct: 1043 KATFAGGIIFGMLRKISKIDSLSLAGEKKKLYGKVIFKNVRFAYPERPEIEILKGLSFSV 1102
Query: 426 QSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEP 485
+ G +++G SG GKST+ LL R YD G+I IDG +IK L+P + RSQI VSQEP
Sbjct: 1103 EPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEP 1162
Query: 486 TLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGG 545
TLF +I ENI+YG+ D SSVT + + AA+ AN + F+ + GF+T VG+RG LSGG
Sbjct: 1163 TLFDCSIAENIIYGL-DPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGG 1221
Query: 546 QKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRK 605
QKQRIAIARAL++ KILLLDEATSALD E+E +VQ A+++ EG+T + IAHRL+T+
Sbjct: 1222 QKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMN 1281
Query: 606 SNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLMKYQT 642
++ I V+ G I+E G++ L+ + + K T
Sbjct: 1282 ADCIAVVSNGTIIEKGTHTQLMSEKGAYYKLTQKQMT 1318
Score = 291 bits (744), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 182/505 (36%), Positives = 285/505 (56%), Gaps = 25/505 (4%)
Query: 149 AQSITKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVM 208
A+ + +LR SI+ QE ++FD + +G L ++ + V + I +
Sbjct: 164 AEQMNNRLRREFVKSILRQEISWFDTNHSGTLATKLFDNLERVKEGTGDKIGMAFQYLSQ 223
Query: 209 VSAGVSMMFXXXXXXXXXXXXXVP--PVAGLAIVYGKFVRKITRNVQDKLANAVQVAEER 266
G + F P + G AI I + + A A +V EE
Sbjct: 224 FITGFIVAFTHSWQLTLVMLAVTPIQALCGFAIAKSMSTFAIRETL--RYAKAGKVVEET 281
Query: 267 ISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAKGVFFG--FTGL-SGNAIILSVL 323
IS+IRTV S + + E+ ++ +++ AKK + KG+F G F + + N I ++
Sbjct: 282 ISSIRTVVSLNGLRYELERYSTAVEE----AKKAGVLKGLFLGISFGAMQASNFISFALA 337
Query: 324 YYGGV-MVSYETITVGNL----SSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIM 378
+Y GV V ++ G++ SS ++ + +G++ L+ L GA ++E++
Sbjct: 338 FYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGPQLA----VLGTAQGAASGIYEVL 393
Query: 379 EREPLI-STSGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSS 437
+R+P+I S+S +KG+I N+ F+YPSRPD IL ++L++ +G +++GSS
Sbjct: 394 DRKPVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSS 453
Query: 438 GSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENIL 497
G GKST+ LLLR YD GKI IDGVD+++++ +LR + VSQEP LF+ TI ENI
Sbjct: 454 GCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENIS 513
Query: 498 YGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALI 557
G +T+ +++ A K ANA F+ NG++T+VG+RG LSGGQKQRIAIARAL+
Sbjct: 514 LG---KEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALV 570
Query: 558 KKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKI 617
+ KILLLDEATSALDAE+E +VQ A++K +G+T + IAHRLSTIR ++ I G++
Sbjct: 571 RNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQV 630
Query: 618 VEIGSYAHLIKNPNSMFNKLMKYQT 642
VE+G + L+ ++ L+ QT
Sbjct: 631 VEVGDHRALMAQ-QGLYYDLVTAQT 654
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 272 bits (696), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 165/501 (32%), Positives = 276/501 (55%), Gaps = 10/501 (1%)
Query: 143 YLMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDG 202
Y ++ + + +R RLFG ++ ++FDK TG L++RI+ D+ V+ + +
Sbjct: 87 YCISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITV 146
Query: 203 LRSTVMVSAGVSMMFXXXXXXXXXXXXXVPPVAGLAIVYGKFVRKITRNVQDKLANAVQV 262
+R + MMF P V+ V K R I++N+Q+ +
Sbjct: 147 VREGASIIGLFIMMFYYSWQLSIILIVLAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTS 206
Query: 263 AEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAKGVFFGFTGLSGNAIILSV 322
AE+ + + V F +++E F+ + + K A + L + + V
Sbjct: 207 AEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRLQGMKMVSASSISDPIIQLIASLALAFV 266
Query: 323 LYYGGVMVSYETITVGNLSSFLLYAAYIGI--SIGGLSNFYSELNKGLGACHRLWEIMER 380
LY +++T G ++ +++++ I + + L+N ++ +G+ AC L+ I++
Sbjct: 267 LYAASFPSVMDSLTAGTIT--VVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFTILDS 324
Query: 381 EPLISTSGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSG 440
E GK G+++F N+ F+YP R D L +++LKI +G +++G SGSG
Sbjct: 325 EQ--EKDEGKRVIERATGDVEFRNVTFTYPGR-DVPALRNINLKIPAGKTVALVGRSGSG 381
Query: 441 KSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGV 500
KST+A L+ R YD G+IL+DG D++E LR+Q+ VSQ LF+ T+ NI Y
Sbjct: 382 KSTIASLITRFYDIDEGEILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYAR 441
Query: 501 NDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKS 560
+ S + I AA+ A A F+ NG DT++GE G++LSGGQ+QRIAIARAL++ S
Sbjct: 442 TEQYS--REQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDS 499
Query: 561 KILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEI 620
IL+LDEATSALD E+E +Q+A+++L + +T L IAHRLSTI K+++I V++ G IVE
Sbjct: 500 PILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVER 559
Query: 621 GSYAHLIKNPNSMFNKLMKYQ 641
G++ L+++ ++ +L K Q
Sbjct: 560 GTHNDLLEH-RGVYAQLHKMQ 579
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 271 bits (692), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 165/501 (32%), Positives = 275/501 (54%), Gaps = 10/501 (1%)
Query: 143 YLMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDG 202
Y ++ + + +R RLFG ++ A+FDK TG L++RI+ D+ V+ + +
Sbjct: 87 YCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITV 146
Query: 203 LRSTVMVSAGVSMMFXXXXXXXXXXXXXVPPVAGLAIVYGKFVRKITRNVQDKLANAVQV 262
+R + MMF P V+ V K R I++N+Q+ +
Sbjct: 147 VREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTS 206
Query: 263 AEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAKGVFFGFTGLSGNAIILSV 322
AE+ + + V F +++E F+ + + K A + L + + V
Sbjct: 207 AEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLIASLALAFV 266
Query: 323 LYYGGVMVSYETITVGNLSSFLLYAAYIGI--SIGGLSNFYSELNKGLGACHRLWEIMER 380
LY +++T G ++ +++++ I + + L+N ++ +G+ AC L+ I++
Sbjct: 267 LYAASFPSVMDSLTAGTIT--VVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDS 324
Query: 381 EPLISTSGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSG 440
E GK G+++F N+ F+YP R + L +++LKI +G +++G SGSG
Sbjct: 325 EQ--EKDEGKRVIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSG 381
Query: 441 KSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGV 500
KST+A L+ R YD G IL+DG D++E LR+Q+ VSQ LF+ T+ NI Y
Sbjct: 382 KSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYAR 441
Query: 501 NDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKS 560
+ S + I AA+ A A F+ NG DTI+GE G++LSGGQ+QRIAIARAL++ S
Sbjct: 442 TEEYS--REQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDS 499
Query: 561 KILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEI 620
IL+LDEATSALD E+E +Q+A+++L + +T L IAHRLSTI ++++I V++ G IVE
Sbjct: 500 PILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVER 559
Query: 621 GSYAHLIKNPNSMFNKLMKYQ 641
G+++ L+ + ++ +L K Q
Sbjct: 560 GTHSELLAQ-HGVYAQLHKMQ 579
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 268 bits (686), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 162/515 (31%), Positives = 280/515 (54%), Gaps = 13/515 (2%)
Query: 130 VFVVGACCNFGRVYLMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELINRISADTS 189
+FV G F Y ++ + ++ ++R RLF + +FD+ TG L++RI+ D+
Sbjct: 75 MFVRG-LSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRITYDSE 133
Query: 190 LVSQCVTQNISDGLRSTVMVSAGVSMMFXXXXXXXXXXXXXVPPVAGLAIVY-GKFVRKI 248
V+ ++ + +R + +++MF V PV AI + K RKI
Sbjct: 134 QVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIV-VAPVVAFAISFVSKRFRKI 192
Query: 249 TRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAKGVFF 308
+RN+Q + + AE+ + + V S+ +++E F+ + + + K A+ +
Sbjct: 193 SRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIAD 252
Query: 309 GFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGI--SIGGLSNFYSELNK 366
+ + + +VL+ V +T G + ++++A G+ + L++ SE +
Sbjct: 253 PVIQMIASLALFAVLFLASVDSIRAELTPGTFT--VVFSAMFGLMRPLKALTSVTSEFQR 310
Query: 367 GLGACHRLWEIMEREPLISTSGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQ 426
G+ AC L+ +M+ E GK+ + + GE+D ++ F+Y + L+ +S I
Sbjct: 311 GMAACQTLFGLMDLET--ERDNGKYEAERVNGEVDVKDVTFTYQGKEKPA-LSHVSFSIP 367
Query: 427 SGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPT 486
G +++G SGSGKST+A L R YD +G I +DG D+++ LR VSQ
Sbjct: 368 QGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVH 427
Query: 487 LFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQ 546
LF+ TI NI Y T+ I AA++A+A F+ + G DT++GE G LSGGQ
Sbjct: 428 LFNDTIANNIAYAAE--GEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQ 485
Query: 547 KQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKS 606
+QR+AIARAL++ + +L+LDEATSALD E+E +Q+A+++L + KTVL IAHRLSTI ++
Sbjct: 486 RQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQA 545
Query: 607 NQICVLDKGKIVEIGSYAHLIKNPNSMFNKLMKYQ 641
++I V+D+G+I+E G +A L+ + + +L + Q
Sbjct: 546 DEILVVDEGEIIERGRHADLLAQ-DGAYAQLHRIQ 579
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 266 bits (679), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 169/577 (29%), Positives = 295/577 (51%), Gaps = 9/577 (1%)
Query: 52 PNNQKVGTKIKKSELKKLFTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTS 111
P +K K + L++L + L + VSS + + P+ +GK IDV++
Sbjct: 11 PILEKPALKNPTATLRRLLGYLRPHTFTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVP 70
Query: 112 DKKEMKEKXXXXXXXXXXVFVVGACCNFGRVYLMNVSAQSITKKLRERLFGSIISQETAY 171
+ ++ + ++ + + + + +M +Q + +LR+ LF + +
Sbjct: 71 RRFDLLPRYMLILGT---IYALTSLLFWLQGKIMLTLSQDVVFRLRKELFEKLQRVPVGF 127
Query: 172 FDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFXXXXXXXXXXXXXV 231
FD+ G++I+R+ D ++ + +I V ++ V MMF V
Sbjct: 128 FDRTPHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSLVTLSIV 187
Query: 232 PPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMD 291
P + + RK Q L + EE IS + +K F++E+ EM F+ +
Sbjct: 188 PLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNE 247
Query: 292 DLFELAKKEALAKGVFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIG 351
L ++ K + GV + N + +GG + + ITVG +++F+ Y+
Sbjct: 248 SLRKVGTKAQIFSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFT 307
Query: 352 ISIGGLSNFYSELNKGLGACHRLWEIMEREPLISTSGGKFFSHSLKGEIDFNNIRFSYPS 411
+ LSN ++ + L + R++EI++ E ++GEI+F N+ FSY
Sbjct: 308 RPLNELSNQFNMIQMALASAERIFEILDLEEEKDDPDAVEL-REVRGEIEFKNVWFSYDK 366
Query: 412 RPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDP 471
+ +L D++ I+ G +++G +GSGK+T+ LL+R YD G+IL+DG+DI+++
Sbjct: 367 KKP--VLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKR 424
Query: 472 MYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGF 531
LRS IG V Q+ LFS T+ EN+ YG + T +I AAK ++ F+ G+
Sbjct: 425 SSLRSSIGIVLQDTILFSTTVKENLKYG---NPGATDEEIKEAAKLTHSDHFIKHLPEGY 481
Query: 532 DTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGK 591
+T++ + G LS GQ+Q +AI RA + KIL+LDEATS +D + E +Q+A+ KL+EGK
Sbjct: 482 ETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGK 541
Query: 592 TVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIK 628
T + IAHRL+TI+ ++ I VL G+IVE+G + LI+
Sbjct: 542 TSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQ 578
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 264 bits (674), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 172/566 (30%), Positives = 284/566 (50%), Gaps = 8/566 (1%)
Query: 66 LKKLFTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKXXXXXX 125
+K+ K K ++ + + ++ I M +P + ID + + EK
Sbjct: 2 IKRYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTI 61
Query: 126 X---XXXVFV-VGACCNFGRVYLMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELI 181
+FV V F R YL ++ I +R++L+ + + ++ ++ G++I
Sbjct: 62 AIGIALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVI 121
Query: 182 NRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFXXXXXXXXXXXXXVPPVAGLAIVY 241
+R+ D + + + + + +S+MF P V+
Sbjct: 122 SRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVF 181
Query: 242 GKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEA 301
+RK+TR LA ER+ I VKSF+ E E +F+ K + A K
Sbjct: 182 FGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHT 241
Query: 302 LAKGVFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFY 361
F + + V+ G + +ITVG L++F+ Y + + L +
Sbjct: 242 RWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASF 301
Query: 362 SELNKGLGACHRLWEIMEREPLISTSGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDL 421
+ L + + R++++++ + I G +G ID +++ F Y +A IL D+
Sbjct: 302 TTLTQSFASMDRVFQLIDEDYDIKNGVGAQPIEIKQGRIDIDHVSFQYNDN-EAPILKDI 360
Query: 422 SLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSV 481
+L I+ G + +G SG GKSTL L+ R YD +G+ILIDG +IK+ LR+QIG V
Sbjct: 361 NLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLV 420
Query: 482 SQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIM 541
Q+ LFS T+ ENIL G + T +++ AAK ANA+ F+++ G+DT VGERG+
Sbjct: 421 QQDNILFSDTVKENILLG---RPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVK 477
Query: 542 LSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLS 601
LSGGQKQR++IAR + IL+LDEATSALD E+E ++Q A++ L + +T L +AHRLS
Sbjct: 478 LSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLS 537
Query: 602 TIRKSNQICVLDKGKIVEIGSYAHLI 627
TI +++I V++ G IVE G++ LI
Sbjct: 538 TITHADKIVVIENGHIVETGTHRELI 563
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 233 bits (594), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 143/504 (28%), Positives = 263/504 (52%), Gaps = 12/504 (2%)
Query: 130 VFVVGACCNFGRVYLMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELINRISADTS 189
V ++GA G + ++Q+ LR LF ++S + ++ T LI R++ D +
Sbjct: 72 VALIGAVGGIGCTVFASYASQNFGADLRRDLFRKVLSFSISNVNRFHTSSLITRLTNDVT 131
Query: 190 LVSQCVTQNISDGLRSTVMVSAGVSMMFXXXXXXXXXXXXXVPPVAGLAIVYGKFVRKIT 249
+ V + +R+ ++ G+ M +PP+ L + K +
Sbjct: 132 QLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLSSVLIFLIPPIVLLFVWLTKKGNPLF 191
Query: 250 RNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAKGVF-- 307
R +Q+ +V E + +R V++F +E+ E +F K ++ + A + VF
Sbjct: 192 RKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFR-KANESLRRSIISAFSLIVFAL 250
Query: 308 --FGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSELN 365
F F N +++VL++GGV+V + +G++ ++ Y I S+ + N + +
Sbjct: 251 PLFIFIV---NMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIV 307
Query: 366 KGLGACHRLWEIMEREPLISTSGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKI 425
+ + R+ E++ +P I + +++G + F N+ F Y D V L+ ++ +
Sbjct: 308 RASASAKRVLEVLNEKPAIEEADNALALPNVEGSVSFENVEFRYFENTDPV-LSGVNFSV 366
Query: 426 QSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEP 485
+ GS+ +V+G +GSGKSTL L+ RL DP+ G++ +D +D++ + LR I +V QE
Sbjct: 367 KPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQET 426
Query: 486 TLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGG 545
LFSGTI EN+ +G D+ T +I+ AAK A + F+I G+D+ V G SGG
Sbjct: 427 VLFSGTIKENLKWGREDA---TDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGG 483
Query: 546 QKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRK 605
QKQR++IARAL+KK K+L+LD+ TS++D E + +++ +G T I ++ T
Sbjct: 484 QKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALL 543
Query: 606 SNQICVLDKGKIVEIGSYAHLIKN 629
+++I VL +GK+ G++ L+++
Sbjct: 544 ADKILVLHEGKVAGFGTHKELLEH 567
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 227 bits (579), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 117/245 (47%), Positives = 174/245 (71%), Gaps = 6/245 (2%)
Query: 399 EIDFNNIRFSYPSRPDA-VILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNG 457
+I F NIRF Y +PD+ VIL++++L I+ G + ++G SGSGKSTL L+ R Y P+NG
Sbjct: 3 DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 60
Query: 458 KILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKE 517
++LIDG D+ DP +LR Q+G V Q+ L + +I +NI N SV K +I+AAK
Sbjct: 61 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLA-NPGMSVEK--VIYAAKL 117
Query: 518 ANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENE 577
A A+ F+ + + G++TIVGE+G LSGGQ+QRIAIARAL+ KIL+ DEATSALD E+E
Sbjct: 118 AGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESE 177
Query: 578 YLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKL 637
+++ + K+ +G+TV+ IAHRLST++ +++I V++KGKIVE G + L+ P S+++ L
Sbjct: 178 HVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 237
Query: 638 MKYQT 642
+ Q+
Sbjct: 238 YQLQS 242
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 227 bits (578), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 117/245 (47%), Positives = 174/245 (71%), Gaps = 6/245 (2%)
Query: 399 EIDFNNIRFSYPSRPDA-VILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNG 457
+I F NIRF Y +PD+ VIL++++L I+ G + ++G SGSGKSTL L+ R Y P+NG
Sbjct: 1 DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 58
Query: 458 KILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKE 517
++LIDG D+ DP +LR Q+G V Q+ L + +I +NI N SV K +I+AAK
Sbjct: 59 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLA-NPGMSVEK--VIYAAKL 115
Query: 518 ANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENE 577
A A+ F+ + + G++TIVGE+G LSGGQ+QRIAIARAL+ KIL+ DEATSALD E+E
Sbjct: 116 AGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESE 175
Query: 578 YLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKL 637
+++ + K+ +G+TV+ IAHRLST++ +++I V++KGKIVE G + L+ P S+++ L
Sbjct: 176 HVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 235
Query: 638 MKYQT 642
+ Q+
Sbjct: 236 YQLQS 240
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 227 bits (578), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 117/245 (47%), Positives = 174/245 (71%), Gaps = 6/245 (2%)
Query: 399 EIDFNNIRFSYPSRPDA-VILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNG 457
+I F NIRF Y +PD+ VIL++++L I+ G + ++G SGSGKSTL L+ R Y P+NG
Sbjct: 7 DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 64
Query: 458 KILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKE 517
++LIDG D+ DP +LR Q+G V Q+ L + +I +NI N SV K +I+AAK
Sbjct: 65 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLA-NPGMSVEK--VIYAAKL 121
Query: 518 ANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENE 577
A A+ F+ + + G++TIVGE+G LSGGQ+QRIAIARAL+ KIL+ DEATSALD E+E
Sbjct: 122 AGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESE 181
Query: 578 YLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKL 637
+++ + K+ +G+TV+ IAHRLST++ +++I V++KGKIVE G + L+ P S+++ L
Sbjct: 182 HVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 241
Query: 638 MKYQT 642
+ Q+
Sbjct: 242 YQLQS 246
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 226 bits (576), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 116/245 (47%), Positives = 174/245 (71%), Gaps = 6/245 (2%)
Query: 399 EIDFNNIRFSYPSRPDA-VILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNG 457
+I F NIRF Y +PD+ VIL++++L I+ G + ++G +GSGKSTL L+ R Y P+NG
Sbjct: 3 DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENG 60
Query: 458 KILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKE 517
++LIDG D+ DP +LR Q+G V Q+ L + +I +NI N SV K +I+AAK
Sbjct: 61 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLA-NPGMSVEK--VIYAAKL 117
Query: 518 ANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENE 577
A A+ F+ + + G++TIVGE+G LSGGQ+QRIAIARAL+ KIL+ DEATSALD E+E
Sbjct: 118 AGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESE 177
Query: 578 YLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKL 637
+++ + K+ +G+TV+ IAHRLST++ +++I V++KGKIVE G + L+ P S+++ L
Sbjct: 178 HVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 237
Query: 638 MKYQT 642
+ Q+
Sbjct: 238 YQLQS 242
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 226 bits (575), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 116/245 (47%), Positives = 174/245 (71%), Gaps = 6/245 (2%)
Query: 399 EIDFNNIRFSYPSRPDA-VILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNG 457
+I F NIRF Y +PD+ VIL++++L I+ G + ++G SGSGKSTL L+ R Y P+NG
Sbjct: 7 DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 64
Query: 458 KILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKE 517
++LIDG D+ DP +LR Q+G V Q+ L + +I +NI N SV K +I+AAK
Sbjct: 65 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLA-NPGMSVEK--VIYAAKL 121
Query: 518 ANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENE 577
A A+ F+ + + G++TIVGE+G LSGGQ+QRIAIARAL+ KIL+ D+ATSALD E+E
Sbjct: 122 AGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESE 181
Query: 578 YLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKL 637
+++ + K+ +G+TV+ IAHRLST++ +++I V++KGKIVE G + L+ P S+++ L
Sbjct: 182 HVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 241
Query: 638 MKYQT 642
+ Q+
Sbjct: 242 YQLQS 246
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 223 bits (568), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 116/245 (47%), Positives = 173/245 (70%), Gaps = 6/245 (2%)
Query: 399 EIDFNNIRFSYPSRPDA-VILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNG 457
+I F NIRF Y +PD+ VIL++++L I+ G + ++G SGSGKSTL L+ R Y P+NG
Sbjct: 1 DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 58
Query: 458 KILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKE 517
++LIDG D+ DP +LR Q+G V Q+ L + +I +NI N SV K +I+AAK
Sbjct: 59 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLA-NPGMSVEK--VIYAAKL 115
Query: 518 ANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENE 577
A A+ F+ + + G++TIVGE+G LSGGQ+QRIAIARAL+ KIL+ DEATSALD E+E
Sbjct: 116 AGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESE 175
Query: 578 YLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKL 637
+++ + K+ +G+TV+ IA RLST++ +++I V++KGKIVE G + L+ P S+++ L
Sbjct: 176 HVIMRNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 235
Query: 638 MKYQT 642
+ Q+
Sbjct: 236 YQLQS 240
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 223 bits (568), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 116/245 (47%), Positives = 173/245 (70%), Gaps = 6/245 (2%)
Query: 399 EIDFNNIRFSYPSRPDA-VILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNG 457
+I F NIRF Y +PD+ VIL++++L I+ G + ++G SGSGKSTL L+ R Y P+NG
Sbjct: 7 DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 64
Query: 458 KILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKE 517
++LIDG D+ DP +LR Q+G V Q+ L + +I +NI N SV K +I+AAK
Sbjct: 65 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLA-NPGMSVEK--VIYAAKL 121
Query: 518 ANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENE 577
A A+ F+ + + G++TIVGE+G LSGGQ+QRIAIARAL+ KIL+ DEATSALD E+E
Sbjct: 122 AGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESE 181
Query: 578 YLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKL 637
+++ + K+ +G+TV+ IA RLST++ +++I V++KGKIVE G + L+ P S+++ L
Sbjct: 182 HVIMRNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 241
Query: 638 MKYQT 642
+ Q+
Sbjct: 242 YQLQS 246
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 199 bits (505), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 100/247 (40%), Positives = 156/247 (63%), Gaps = 4/247 (1%)
Query: 384 ISTSGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKST 443
+S G ++KG + F ++ F+YP+ P+ +L L+ + G +T+++G +GSGKST
Sbjct: 1 MSPLSGSLAPLNMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKST 60
Query: 444 LAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDS 503
+A LL LY P GK+L+DG + + D YL +Q+ +V QEP LF + ENI YG+ +
Sbjct: 61 VAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGL--T 118
Query: 504 SSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKIL 563
+ T +I A E+ A+ F+ F G+DT VGE G LSGGQ+Q +A+ARALI+K ++L
Sbjct: 119 RTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLL 178
Query: 564 LLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIRKSNQICVLDKGKIVEIG 621
+LD+ATSALDA N+ VQ + + E +TVL I H+LS +++ I L +G + E G
Sbjct: 179 ILDQATSALDAGNQLRVQRLLYESPEWASRTVLLITHQLSLAERAHHILFLKEGSVCEQG 238
Query: 622 SYAHLIK 628
++ L++
Sbjct: 239 THLQLME 245
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 195 bits (496), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 105/229 (45%), Positives = 153/229 (66%), Gaps = 4/229 (1%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
I+F+++ FSYP + + L ++ I SG+ +++G +GSGKST+A LL R YD + G I
Sbjct: 18 IEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAE-GDI 76
Query: 460 LIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEAN 519
I G ++ + + +RS IG V Q+ LF+ TI NILYG D+ T ++I A K A
Sbjct: 77 KIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDA---TDEEVIKATKSAQ 133
Query: 520 AYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYL 579
Y F+ +DTIVG +G+ LSGG++QRIAIAR L+K KI++ DEATS+LD++ EYL
Sbjct: 134 LYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYL 193
Query: 580 VQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIK 628
Q A+E L + +T++ IAHRLSTI + I +L+KGKIVE G++ L+K
Sbjct: 194 FQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLK 242
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 194 bits (494), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 99/247 (40%), Positives = 154/247 (62%), Gaps = 4/247 (1%)
Query: 384 ISTSGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKST 443
+S G ++KG + F ++ F+YP+ P+ +L L+ + G +T+++G +GSGKST
Sbjct: 1 MSPLSGSLAPLNMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKST 60
Query: 444 LAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDS 503
+A LL LY P GK+L+DG + + D YL +Q+ +V QEP LF + ENI YG+ +
Sbjct: 61 VAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGL--T 118
Query: 504 SSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKIL 563
+ T +I A E+ A+ F+ F G+DT VGE G LSGGQ+Q +A+ARALI+K ++L
Sbjct: 119 RTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLL 178
Query: 564 LLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIRKSNQICVLDKGKIVEIG 621
+LD ATSALDA N+ VQ + + E +TVL I +LS +++ I L +G + E G
Sbjct: 179 ILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQG 238
Query: 622 SYAHLIK 628
++ L++
Sbjct: 239 THLQLME 245
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 189 bits (481), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 97/247 (39%), Positives = 153/247 (61%), Gaps = 4/247 (1%)
Query: 384 ISTSGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKST 443
+S G ++KG + F ++ F+YP+ P+ +L L+ + G +T+++G +GSGKST
Sbjct: 1 MSPLSGSLAPLNMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKST 60
Query: 444 LAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDS 503
+A LL LY P GK+L+DG + + D YL +Q+ +V QEP LF + ENI YG+ +
Sbjct: 61 VAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGL--T 118
Query: 504 SSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKIL 563
+ T +I A E+ A+ F+ F G+DT VGE G L+ GQ+Q +A+ARALI+K ++L
Sbjct: 119 RTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLL 178
Query: 564 LLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIRKSNQICVLDKGKIVEIG 621
+LD ATSALDA N+ VQ + + E +TVL I +LS +++ I L +G + E G
Sbjct: 179 ILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQG 238
Query: 622 SYAHLIK 628
++ L++
Sbjct: 239 THLQLME 245
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 187 bits (476), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 100/231 (43%), Positives = 144/231 (62%), Gaps = 5/231 (2%)
Query: 397 KGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQN 456
KG I+F N+ FSY + L D+S + G +++G SG+GKST+ LL R YD +
Sbjct: 51 KGRIEFENVHFSYADGRET--LQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISS 108
Query: 457 GKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAK 516
G I IDG DI ++ LRS IG V Q+ LF+ TI +NI YG + ++ AA+
Sbjct: 109 GCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYG---RVTAGNDEVEAAAQ 165
Query: 517 EANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAEN 576
A + ++ F G+ T VGERG+ LSGG+KQR+AIAR ++K I+LLDEATSALD N
Sbjct: 166 AAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSN 225
Query: 577 EYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLI 627
E +Q+++ K+ +T + +AHRLST+ ++QI V+ G IVE G + L+
Sbjct: 226 ERAIQASLAKVCANRTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEALL 276
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 186 bits (473), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 92/235 (39%), Positives = 150/235 (63%), Gaps = 4/235 (1%)
Query: 396 LKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQ 455
L+G + F ++ F+YP+RPD ++L L+ ++ G +T+++G +GSGKST+A LL LY P
Sbjct: 11 LEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT 70
Query: 456 NGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAA 515
G++L+DG + + + YL Q+ +V QEP +F ++ ENI YG+ T +I AA
Sbjct: 71 GGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKP--TMEEITAAA 128
Query: 516 KEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAE 575
++ A+ F+ G+DT V E G LSGGQ+Q +A+ARALI+K +L+LD+ATSALDA
Sbjct: 129 VKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDAN 188
Query: 576 NEYLVQSAIEKLIE--GKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIK 628
++ V+ + + E ++VL I LS + +++ I L+ G I E G++ L++
Sbjct: 189 SQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLME 243
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 179 bits (454), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 95/211 (45%), Positives = 136/211 (64%), Gaps = 2/211 (0%)
Query: 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRS 476
IL D+S + Q S+ + G SG GKST+ LL R Y P G+I IDG I + RS
Sbjct: 17 ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRS 76
Query: 477 QIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVG 536
QIG VSQ+ + +GTI EN+ YG+ T D+ A A FV + + +T VG
Sbjct: 77 QIGFVSQDSAIMAGTIRENLTYGLE--GDYTDEDLWQVLDLAFARSFVENMPDQLNTEVG 134
Query: 537 ERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTI 596
ERG+ +SGGQ+QR+AIARA ++ KIL+LDEAT++LD+E+E +VQ A++ L++G+T L I
Sbjct: 135 ERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVI 194
Query: 597 AHRLSTIRKSNQICVLDKGKIVEIGSYAHLI 627
AHRLSTI +++I ++KG+I G + L+
Sbjct: 195 AHRLSTIVDADKIYFIEKGQITGSGKHNELV 225
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 112 bits (280), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 76/245 (31%), Positives = 125/245 (51%), Gaps = 18/245 (7%)
Query: 401 DFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKIL 460
D NN+ FS+ +L +++L I+ G M ++ GS+GSGK++L ML+L + G I
Sbjct: 37 DENNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIK 96
Query: 461 IDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANA 520
G ++ SQ + GTI ENI++GV+ KS K
Sbjct: 97 HSG-------------RVSFCSQFSWIMPGTIKENIIFGVSYDEYRYKS----VVKACQL 139
Query: 521 YGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDA-ENEYL 579
+ F +T++GE G+ LSGGQ+ RI++ARA+ K + + LLD LD E +
Sbjct: 140 QQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQV 199
Query: 580 VQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLMK 639
+S + KL+ KT + + ++ +RK+++I +L +G G+++ L +KLM
Sbjct: 200 FESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSKLMG 259
Query: 640 YQTMD 644
Y T D
Sbjct: 260 YDTFD 264
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 112 bits (279), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 76/245 (31%), Positives = 125/245 (51%), Gaps = 18/245 (7%)
Query: 401 DFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKIL 460
D NN+ FS+ +L +++L I+ G M ++ GS+GSGK++L ML+L + G I
Sbjct: 37 DENNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIK 96
Query: 461 IDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANA 520
G ++ SQ + GTI ENI++GV+ KS K
Sbjct: 97 HSG-------------RVSFCSQFSWIMPGTIKENIIFGVSYDEYRYKS----VVKACQL 139
Query: 521 YGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDA-ENEYL 579
+ F +T++GE G+ LSGGQ+ RI++ARA+ K + + LLD LD E +
Sbjct: 140 QQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQV 199
Query: 580 VQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLMK 639
+S + KL+ KT + + ++ +RK+++I +L +G G+++ L +KLM
Sbjct: 200 FESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSKLMG 259
Query: 640 YQTMD 644
Y T D
Sbjct: 260 YDTFD 264
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 110 bits (274), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 76/245 (31%), Positives = 124/245 (50%), Gaps = 18/245 (7%)
Query: 401 DFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKIL 460
D NN+ FS+ +L +++L I+ G M ++ GS+GSGK++L ML+L + G I
Sbjct: 37 DENNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIK 96
Query: 461 IDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANA 520
G ++ SQ + GTI ENI+ GV+ KS K
Sbjct: 97 HSG-------------RVSFCSQFSWIMPGTIKENIIRGVSYDEYRYKS----VVKACQL 139
Query: 521 YGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDA-ENEYL 579
+ F +T++GE G+ LSGGQ+ RI++ARA+ K + + LLD LD E +
Sbjct: 140 QQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQV 199
Query: 580 VQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLMK 639
+S + KL+ KT + + ++ +RK+++I +L +G G+++ L +KLM
Sbjct: 200 FESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSKLMG 259
Query: 640 YQTMD 644
Y T D
Sbjct: 260 YDTFD 264
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 110 bits (274), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 76/245 (31%), Positives = 124/245 (50%), Gaps = 18/245 (7%)
Query: 401 DFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKIL 460
D NN+ FS+ +L +++L I+ G M ++ GS+GSGK++L ML+L + G I
Sbjct: 37 DENNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIK 96
Query: 461 IDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANA 520
G ++ SQ + GTI ENI+ GV+ KS K
Sbjct: 97 HSG-------------RVSFCSQFSWIMPGTIKENIISGVSYDEYRYKS----VVKACQL 139
Query: 521 YGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDA-ENEYL 579
+ F +T++GE G+ LSGGQ+ RI++ARA+ K + + LLD LD E +
Sbjct: 140 QQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQV 199
Query: 580 VQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLMK 639
+S + KL+ KT + + ++ +RK+++I +L +G G+++ L +KLM
Sbjct: 200 FESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSKLMG 259
Query: 640 YQTMD 644
Y T D
Sbjct: 260 YDTFD 264
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 108 bits (270), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 66/221 (29%), Positives = 126/221 (57%), Gaps = 14/221 (6%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQ 477
++ +S +++ G +++G SG GK+T ++L +Y P +G+I D V + ++ P Y +
Sbjct: 19 VDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKY--RE 76
Query: 478 IGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVG 536
+G V Q L+ T++ENI + + + ++K ++ E I K D ++
Sbjct: 77 VGMVFQNYALYPHMTVFENIAFPLR-ARRISKDEVEKRVVE-------IARKLLIDNLLD 128
Query: 537 ERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVL 594
+ LSGGQ+QR+A+ARAL+K+ K+LL DE S LDA ++++ I+ L + G T +
Sbjct: 129 RKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSV 188
Query: 595 TIAH-RLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMF 634
+ H + + +++I V ++GK+V+ G+ + +P +MF
Sbjct: 189 YVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSPKNMF 229
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 107 bits (268), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 122/221 (55%), Gaps = 14/221 (6%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQ 477
LN+++LKI+ G +++G SGSGKSTL + +Y P +GKI D D+ EL P
Sbjct: 19 LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRN 76
Query: 478 IGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVG 536
+G V Q L+ T+Y+NI + + + + +I +E + D ++
Sbjct: 77 VGLVFQNWALYPHMTVYKNIAFPL-ELRKAPREEIDKKVREVAKMLHI-------DKLLN 128
Query: 537 ERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVL 594
LSGGQ+QR+AIARAL+K+ ++LLLDE S LDA V++ +++L + G T +
Sbjct: 129 RYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTV 188
Query: 595 TIAH-RLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMF 634
+ H + + +++I V+ +G+I+++G+ + P F
Sbjct: 189 YVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYKPKYKF 229
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 105 bits (263), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 76/245 (31%), Positives = 124/245 (50%), Gaps = 19/245 (7%)
Query: 401 DFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKIL 460
D NN+ FS+ +L +++L I+ G M ++ GS+GSGK++L ML+L + G I
Sbjct: 37 DENNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIK 96
Query: 461 IDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANA 520
G ++ SQ + GTI ENI+ GV+ KS K
Sbjct: 97 HSG-------------RVSFCSQFSWIMPGTIKENII-GVSYDEYRYKS----VVKACQL 138
Query: 521 YGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDA-ENEYL 579
+ F +T++GE G+ LSGGQ+ RI++ARA+ K + + LLD LD E +
Sbjct: 139 QQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQV 198
Query: 580 VQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLMK 639
+S + KL+ KT + + ++ +RK+++I +L +G G+++ L +KLM
Sbjct: 199 FESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSKLMG 258
Query: 640 YQTMD 644
Y T D
Sbjct: 259 YDTFD 263
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 103 bits (256), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 73/249 (29%), Positives = 125/249 (50%), Gaps = 27/249 (10%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
I N F++ +R D LN ++ I G++ +V+G G GKS+L LL D G +
Sbjct: 4 ITVRNATFTW-ARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHV 62
Query: 460 LIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEAN 519
I G + V Q+ + + ++ ENIL+G +S I
Sbjct: 63 AIKG-------------SVAYVPQQAWIQNDSLRENILFGCQLEEPYYRSVI-------Q 102
Query: 520 AYGFVIDFK---NGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAE- 575
A + D + +G T +GE+G+ LSGGQKQR+++ARA+ + I L D+ SA+DA
Sbjct: 103 ACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHV 162
Query: 576 NEYLVQSAI--EKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSM 633
+++ ++ I + +++ KT + + H +S + + + I V+ GKI E+GSY L+ +
Sbjct: 163 GKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARDGAF 222
Query: 634 FNKLMKYQT 642
L Y +
Sbjct: 223 AEFLRTYAS 231
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 68/223 (30%), Positives = 118/223 (52%), Gaps = 18/223 (8%)
Query: 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRS 476
+L D++ KI+ G + +V GS+G+GK++L M+++ +P GKI G
Sbjct: 35 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 81
Query: 477 QIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVG 536
+I SQ + GTI ENI++GV+ +S I E + + F + ++G
Sbjct: 82 RISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEED----ISKFAEKDNIVLG 137
Query: 537 ERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENE-YLVQSAIEKLIEGKTVLT 595
E GI LSGGQ+ RI++ARA+ K + + LLD LD E + +S + KL+ KT +
Sbjct: 138 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL 197
Query: 596 IAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLM 638
+ ++ ++K+++I +L +G G+++ L +KLM
Sbjct: 198 VTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSSKLM 240
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 68/223 (30%), Positives = 118/223 (52%), Gaps = 18/223 (8%)
Query: 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRS 476
+L D++ KI+ G + +V GS+G+GK++L M+++ +P GKI G
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 69
Query: 477 QIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVG 536
+I SQ + GTI ENI++GV+ +S I E + + F + ++G
Sbjct: 70 RISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEED----ISKFAEKDNIVLG 125
Query: 537 ERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENE-YLVQSAIEKLIEGKTVLT 595
E GI LSGGQ+ RI++ARA+ K + + LLD LD E + +S + KL+ KT +
Sbjct: 126 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL 185
Query: 596 IAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLM 638
+ ++ ++K+++I +L +G G+++ L +KLM
Sbjct: 186 VTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSSKLM 228
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 72/243 (29%), Positives = 125/243 (51%), Gaps = 18/243 (7%)
Query: 403 NNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILID 462
+++ FS S +L D++ KI+ G + +V GS+G+GK++L M+++ +P GKI
Sbjct: 39 DSLSFSNFSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHS 98
Query: 463 GVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYG 522
G +I SQ + GTI ENI+ GV+ +S I E +
Sbjct: 99 G-------------RISFCSQFSWIMPGTIKENIIAGVSYDEYRYRSVIKACQLEED--- 142
Query: 523 FVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENE-YLVQ 581
+ F + ++GE GI LSGGQ+ RI++ARA+ K + + LLD LD E + +
Sbjct: 143 -ISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFE 201
Query: 582 SAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLMKYQ 641
S + KL+ KT + + ++ ++K+++I +L +G G+++ L +KLM
Sbjct: 202 SCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSSKLMGCD 261
Query: 642 TMD 644
+ D
Sbjct: 262 SFD 264
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 100 bits (248), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 112/218 (51%), Gaps = 5/218 (2%)
Query: 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRS 476
IL ++S I G ++G +GSGKSTL LRL + + G+I IDGV + R
Sbjct: 36 ILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE-GEIQIDGVSWDSITLEQWRK 94
Query: 477 QIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVG 536
G + Q+ +FSGT +N+ + +++ + +I A E + F D ++
Sbjct: 95 AFGVIPQKVFIFSGTFRKNL----DPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLV 150
Query: 537 ERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTI 596
+ G +LS G KQ + +AR+++ K+KILLLDE ++ LD +++ +++ TV+
Sbjct: 151 DGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILC 210
Query: 597 AHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMF 634
R+ + + +Q V+++ K+ + S L P F
Sbjct: 211 EARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRF 248
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 99.8 bits (247), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 84/244 (34%), Positives = 123/244 (50%), Gaps = 16/244 (6%)
Query: 393 SHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLY 452
SH L+ ID + ++ S+ S +L +++ I+ G + VIG SGSGKST L L
Sbjct: 19 SHMLQ-MIDVHQLKKSFGS---LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLE 74
Query: 453 DPQNGKILIDGVDIKELDPMY--LRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKS 509
D G+I+IDG+++K D +R ++G V Q LF T+ NI V K
Sbjct: 75 DFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLA---PMKVRKW 131
Query: 510 DIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEAT 569
++A A + K G LSGGQ QR+AIARAL + KI+L DE T
Sbjct: 132 ----PREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPT 187
Query: 570 SALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLI 627
SALD E V S +++L EG T++ + H + R+ +++ +D G I+E G L
Sbjct: 188 SALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLF 247
Query: 628 KNPN 631
P
Sbjct: 248 DRPQ 251
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 99.4 bits (246), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 81/237 (34%), Positives = 119/237 (50%), Gaps = 15/237 (6%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
ID + ++ S+ S +L +++ I+ G + VIG SGSGKST L L D G+I
Sbjct: 4 IDVHQLKKSFGS---LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEI 60
Query: 460 LIDGVDIKELDPMY--LRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAK 516
+IDG+++K D +R ++G V Q LF T+ NI V K +
Sbjct: 61 IIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLA---PMKVRK----WPRE 113
Query: 517 EANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAEN 576
+A A + K G LSGGQ QR+AIARAL + KI+L DE TSALD E
Sbjct: 114 KAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEM 173
Query: 577 EYLVQSAIEKLI-EGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLIKNPN 631
V S +++L EG T++ + H + R+ +++ +D G I+E G L P
Sbjct: 174 VGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDRPQ 230
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 99.0 bits (245), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 65/239 (27%), Positives = 125/239 (52%), Gaps = 16/239 (6%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
I+F + YP A + +S +I+ G M ++G SGSGK+T+ L+ L P G +
Sbjct: 15 IEFVGVEKIYPG--GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDV 72
Query: 460 LIDGVDIKELDPMYLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEA 518
I G + +L P + +G V Q LF T+Y+N+ +G+ + V K ++ +E
Sbjct: 73 WIGGKRVTDLPPQ--KRNVGLVFQNYALFQHMTVYDNVSFGLREKR-VPKDEMDARVREL 129
Query: 519 NAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEY 578
+ + + N F LSGGQ+QR+A+ARAL + ++LL DE +A+D +
Sbjct: 130 LRFMRLESYANRFPH-------ELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRR 182
Query: 579 LVQSAIEKLIE--GKTVLTIAH-RLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMF 634
+++ + ++ + G T + + H + + ++++ VL +G + + G+ + + P ++F
Sbjct: 183 ELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKPGTLF 241
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 116/217 (53%), Gaps = 17/217 (7%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQ 477
L++LSLK++SG ++G +G+GK+ L+ + P +G+IL+DG D+ +L P +
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHD 73
Query: 478 IGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVG 536
I V Q +LF + +N+ +G+ ++ A+ D K + ++
Sbjct: 74 IAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTAR---------DLK--IEHLLD 122
Query: 537 ERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGK--TVL 594
+ LSGG++QR+A+ARAL+ KILLLDE SALD + + + L + TVL
Sbjct: 123 RNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVL 182
Query: 595 TIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHLIKNP 630
I H + R +++I V+ GK++++G + + P
Sbjct: 183 HITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKP 219
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/243 (29%), Positives = 125/243 (51%), Gaps = 19/243 (7%)
Query: 403 NNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILID 462
+++ FS S +L D++ KI+ G + +V GS+G+GK++L M+++ +P GKI
Sbjct: 39 DSLSFSNFSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHS 98
Query: 463 GVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYG 522
G +I SQ + GTI ENI+ GV+ +S I E +
Sbjct: 99 G-------------RISFCSQNSWIMPGTIKENII-GVSYDEYRYRSVIKACQLEED--- 141
Query: 523 FVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENE-YLVQ 581
+ F + ++GE GI LSGGQ+ RI++ARA+ K + + LLD LD E + +
Sbjct: 142 -ISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFE 200
Query: 582 SAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLMKYQ 641
S + KL+ KT + + ++ ++K+++I +L +G G+++ L +KLM
Sbjct: 201 SCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLRPDFSSKLMGCD 260
Query: 642 TMD 644
+ D
Sbjct: 261 SFD 263
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 72/225 (32%), Positives = 119/225 (52%), Gaps = 21/225 (9%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYL--- 474
LN++SL + +G + VIG+SG+GKSTL + L P G +L+DG ++ L L
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 80
Query: 475 RSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDT 533
R QIG + Q L S T++ N+ + + + K ++ E + + D + + +
Sbjct: 81 RRQIGMIFQHFNLLSSRTVFGNVALPL-ELDNTPKDEVKRRVTELLSLVGLGDKHDSYPS 139
Query: 534 IVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE---- 589
LSGGQKQR+AIARAL K+LL DEATSALD +S +E L +
Sbjct: 140 -------NLSGGQKQRVAIARALASNPKVLLCDEATSALDPAT---TRSILELLKDINRR 189
Query: 590 -GKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLIKNPNS 632
G T+L I H + +++ + + V+ G+++E + + + +P +
Sbjct: 190 LGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKT 234
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/229 (30%), Positives = 119/229 (51%), Gaps = 19/229 (8%)
Query: 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRS 476
+L D++ KI+ G + +V GS+G+GK++L M+++ +P GKI G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 99
Query: 477 QIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVG 536
+I SQ + GTI ENI+ GV+ +S I E + + F + ++G
Sbjct: 100 RISFCSQNSWIMPGTIKENII-GVSYDEYRYRSVIKACQLEED----ISKFAEKDNIVLG 154
Query: 537 ERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENE-YLVQSAIEKLIEGKTVLT 595
E GI LSGGQ+ RI++ARA+ K + + LLD LD E + +S + KL+ KT +
Sbjct: 155 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL 214
Query: 596 IAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLMKYQTMD 644
+ ++ ++K+++I +L +G G+++ L +KLM + D
Sbjct: 215 VTSKMEHLKKADKILILHEGSSYFYGTFSELQNLRPDFSSKLMGCDSFD 263
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 119/229 (51%), Gaps = 18/229 (7%)
Query: 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRS 476
+L D++ KI+ G + +V GS+G+GK++L M+++ +P GKI G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 99
Query: 477 QIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVG 536
+I SQ + GTI ENI++GV+ +S I E + + F + ++G
Sbjct: 100 RISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEED----ISKFAEKDNIVLG 155
Query: 537 ERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENE-YLVQSAIEKLIEGKTVLT 595
E GI LS GQ+ +I++ARA+ K + + LLD LD E + +S + KL+ KT +
Sbjct: 156 EGGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL 215
Query: 596 IAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLMKYQTMD 644
+ ++ ++K+++I +L +G G+++ L +KLM + D
Sbjct: 216 VTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSSKLMGCDSFD 264
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 96.3 bits (238), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 71/225 (31%), Positives = 119/225 (52%), Gaps = 21/225 (9%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYL--- 474
LN++SL + +G + VIG+SG+GKSTL + L P G +L+DG ++ L L
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103
Query: 475 RSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDT 533
R QIG + Q L S T++ N+ + + + K ++ E + + D + + +
Sbjct: 104 RRQIGMIFQHFNLLSSRTVFGNVALPL-ELDNTPKDEVKRRVTELLSLVGLGDKHDSYPS 162
Query: 534 IVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE---- 589
LSGGQKQR+AIARAL K+LL D+ATSALD +S +E L +
Sbjct: 163 -------NLSGGQKQRVAIARALASNPKVLLCDQATSALDPAT---TRSILELLKDINRR 212
Query: 590 -GKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLIKNPNS 632
G T+L I H + +++ + + V+ G+++E + + + +P +
Sbjct: 213 LGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKT 257
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 95.5 bits (236), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 68/223 (30%), Positives = 117/223 (52%), Gaps = 19/223 (8%)
Query: 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRS 476
+L D++ KI+ G + +V GS+G+GK++L M+++ +P GKI G
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 69
Query: 477 QIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVG 536
+I SQ + GTI ENI+ GV+ +S I E + + F + ++G
Sbjct: 70 RISFCSQFSWIMPGTIKENII-GVSYDEYRYRSVIKACQLEED----ISKFAEKDNIVLG 124
Query: 537 ERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENE-YLVQSAIEKLIEGKTVLT 595
E GI LSGGQ+ RI++ARA+ K + + LLD LD E + +S + KL+ KT +
Sbjct: 125 EGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL 184
Query: 596 IAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLM 638
+ ++ ++K+++I +L +G G+++ L +KLM
Sbjct: 185 VTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSSKLM 227
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 71/225 (31%), Positives = 118/225 (52%), Gaps = 21/225 (9%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYL--- 474
LN++SL + +G + VIG+SG+GKSTL + L P G +L+DG ++ L L
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103
Query: 475 RSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDT 533
R QIG + Q L S T++ N+ + + + K ++ E + + D + + +
Sbjct: 104 RRQIGXIFQHFNLLSSRTVFGNVALPL-ELDNTPKDEVKRRVTELLSLVGLGDKHDSYPS 162
Query: 534 IVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE---- 589
LSGGQKQR+AIARAL K+LL D+ATSALD +S +E L +
Sbjct: 163 -------NLSGGQKQRVAIARALASNPKVLLCDQATSALDPAT---TRSILELLKDINRR 212
Query: 590 -GKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLIKNPNS 632
G T+L I H +++ + + V+ G+++E + + + +P +
Sbjct: 213 LGLTILLITHEXDVVKRICDCVAVISNGELIEQDTVSEVFSHPKT 257
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 92.0 bits (227), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 114/221 (51%), Gaps = 14/221 (6%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQ 477
+N L+L I+ G ++G SG GK+T ++ L +P G+I D+ L P
Sbjct: 27 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRN 84
Query: 478 IGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVG 536
I V Q ++ T+YENI + + K +I + A + + N +
Sbjct: 85 ISMVFQSYAVWPHMTVYENIAFPLK-IKKFPKDEIDKRVRWAAELLQIEELLNRYPA--- 140
Query: 537 ERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTI 596
LSGGQ+QR+A+ARA++ + +LL+DE S LDA+ +++ I+KL + V TI
Sbjct: 141 ----QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTI 196
Query: 597 ---AHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMF 634
++ + ++I V+++G++++IGS + PNS+F
Sbjct: 197 YVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVF 237
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 92.0 bits (227), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 114/221 (51%), Gaps = 14/221 (6%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQ 477
+N L+L I+ G ++G SG GK+T ++ L +P G+I D+ L P
Sbjct: 28 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRN 85
Query: 478 IGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVG 536
I V Q ++ T+YENI + + K +I + A + + N +
Sbjct: 86 ISMVFQSYAVWPHMTVYENIAFPLK-IKKFPKDEIDKRVRWAAELLQIEELLNRYPA--- 141
Query: 537 ERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTI 596
LSGGQ+QR+A+ARA++ + +LL+DE S LDA+ +++ I+KL + V TI
Sbjct: 142 ----QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTI 197
Query: 597 ---AHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMF 634
++ + ++I V+++G++++IGS + PNS+F
Sbjct: 198 YVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVF 238
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 118/229 (51%), Gaps = 19/229 (8%)
Query: 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRS 476
+L D++ KI+ G + +V GS+G+GK++L M+++ +P GKI G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 99
Query: 477 QIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVG 536
+I SQ + GTI ENI+ GV+ +S I E + + F + ++G
Sbjct: 100 RISFCSQFSWIMPGTIKENII-GVSYDEYRYRSVIKACQLEED----ISKFAEKDNIVLG 154
Query: 537 ERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENE-YLVQSAIEKLIEGKTVLT 595
E GI LS GQ+ +I++ARA+ K + + LLD LD E + +S + KL+ KT +
Sbjct: 155 EGGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL 214
Query: 596 IAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLMKYQTMD 644
+ ++ ++K+++I +L +G G+++ L +KLM + D
Sbjct: 215 VTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSSKLMGCDSFD 263
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 114/221 (51%), Gaps = 14/221 (6%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQ 477
L ++SL I G V G++GSGKSTL ++ L +P +G +L DG K + +R
Sbjct: 23 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYE---IRRN 79
Query: 478 IGSVSQEP--TLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIV 535
IG Q P F+ +++ + + V + D + K+A + +DF + D +
Sbjct: 80 IGIAFQYPEDQFFAERVFDEVAFAVKNFYP--DRDPVPLVKKAMEF-VGLDFDSFKDRV- 135
Query: 536 GERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKL-IEGKTVL 594
LSGG+K+R+AIA ++ + IL+LDE LD E + + +EK GKTV+
Sbjct: 136 ---PFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVI 192
Query: 595 TIAHRLST-IRKSNQICVLDKGKIVEIGSYAHLIKNPNSMF 634
I+H + T I +++ VL+KGK V G+ ++ + F
Sbjct: 193 LISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEKYDPRF 233
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 114/221 (51%), Gaps = 14/221 (6%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQ 477
L ++SL I G V G++GSGKSTL ++ L +P +G +L DG K + +R
Sbjct: 25 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYE---IRRN 81
Query: 478 IGSVSQEP--TLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIV 535
IG Q P F+ +++ + + V + D + K+A + +DF + D +
Sbjct: 82 IGIAFQYPEDQFFAERVFDEVAFAV--KNFYPDRDPVPLVKKAMEF-VGLDFDSFKDRV- 137
Query: 536 GERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKL-IEGKTVL 594
LSGG+K+R+AIA ++ + IL+LDE LD E + + +EK GKTV+
Sbjct: 138 ---PFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVI 194
Query: 595 TIAHRLST-IRKSNQICVLDKGKIVEIGSYAHLIKNPNSMF 634
I+H + T I +++ VL+KGK V G+ ++ + F
Sbjct: 195 LISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEKYDPRF 235
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 117/232 (50%), Gaps = 18/232 (7%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
I+ N++ F Y +L D++ + ++G + V+G +GSGK+TL +L L G+I
Sbjct: 12 IELNSVSFRYNG---DYVLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLL-AAAGEI 67
Query: 460 LIDGVDIKELDPMYLRSQIGSVSQEPT--LFSGTIYENILYGVNDSSSVTKSDIIHAAKE 517
+DG DP LR +G V Q P+ + T+ E++ + + + + +S++ K+
Sbjct: 68 FLDG---SPADPFLLRKNVGYVFQNPSSQIIGATVEEDVAFSL-EIMGLDESEMRKRIKK 123
Query: 518 ANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENE 577
V++ G + + LSGGQKQR+AIA L + ++ L LDE S LD ++
Sbjct: 124 ------VLELV-GLSGLAAADPLNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQ 176
Query: 578 YLVQSAIEKLI-EGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIK 628
+ +E L EGK ++ + H L + + I + G I GS+ ++
Sbjct: 177 REIFQVLESLKNEGKGIILVTHELEYLDDMDFILHISNGTIDFCGSWEEFVE 228
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 72/228 (31%), Positives = 121/228 (53%), Gaps = 21/228 (9%)
Query: 416 VILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDI----KELDP 471
V L+++++ I++G ++G SG+GK+T ++ L P G++ D + K + P
Sbjct: 19 VALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVP 78
Query: 472 MYLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNG 530
R +IG V Q L+ T +ENI + + + ++K +I K ++D +
Sbjct: 79 PEDR-KIGMVFQTWALYPNLTAFENIAFPLTNMK-MSKEEI---RKRVEEVAKILDIHHV 133
Query: 531 FDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAE----NEYLVQSAIEK 586
+ E LSGGQ+QR+A+ARAL+K +LLLDE S LDA LV+ +
Sbjct: 134 LNHFPRE----LSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSR 189
Query: 587 LIEGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLIKNPNSM 633
L G T+L ++H + I ++++ VL KGK+V++G L NP S+
Sbjct: 190 L--GVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSI 235
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 104/205 (50%), Gaps = 18/205 (8%)
Query: 433 VIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSG-T 491
++G +G+GKS L+ + P G++ ++G DI L P R IG V Q+ LF +
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIGFVPQDYALFPHLS 86
Query: 492 IYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIA 551
+Y NI YG+ + V + + E ++D K LSGG++QR+A
Sbjct: 87 VYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPA----------RLSGGERQRVA 136
Query: 552 IARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGK---TVLTIAHRL-STIRKSN 607
+ARAL+ + ++LLLDE SA+D + + ++ + + ++ + +L + H L ++
Sbjct: 137 LARALVIQPRLLLLDEPLSAVDLKTKGVLMEEL-RFVQREFDVPILHVTHDLIEAAMLAD 195
Query: 608 QICVLDKGKIVEIGSYAHLIKNPNS 632
++ V+ G+IVE G L N
Sbjct: 196 EVAVMLNGRIVEKGKLKELFSAKNG 220
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 82.8 bits (203), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 71/228 (31%), Positives = 120/228 (52%), Gaps = 21/228 (9%)
Query: 416 VILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDI----KELDP 471
V L+++++ I++G ++G SG+GK+T ++ L P G++ D + K + P
Sbjct: 19 VALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVP 78
Query: 472 MYLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNG 530
R +IG V Q L+ T +ENI + + + ++K +I K ++D +
Sbjct: 79 PEDR-KIGMVFQTWALYPNLTAFENIAFPLTNMK-MSKEEI---RKRVEEVAKILDIHHV 133
Query: 531 FDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAE----NEYLVQSAIEK 586
+ E LSG Q+QR+A+ARAL+K +LLLDE S LDA LV+ +
Sbjct: 134 LNHFPRE----LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSR 189
Query: 587 LIEGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLIKNPNSM 633
L G T+L ++H + I ++++ VL KGK+V++G L NP S+
Sbjct: 190 L--GVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSI 235
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 82.8 bits (203), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 113/230 (49%), Gaps = 18/230 (7%)
Query: 414 DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELD--- 470
D + DLSL+I+ G ++G SG GK+T + L +P G+I I+ + + +
Sbjct: 18 DVTAVKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPEKGV 77
Query: 471 --PMYLRSQIGSVSQEPTLFS-GTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDF 527
P R + V Q L+ T+Y+NI + + V K +I +E
Sbjct: 78 FVPPKERD-VAXVFQSYALYPHXTVYDNIAFPLK-LRKVPKQEIDKRVREVAEX------ 129
Query: 528 KNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKL 587
G ++ + LSGGQ+QR+A+ RA+I++ K+ L DE S LDA+ ++ ++KL
Sbjct: 130 -LGLTELLNRKPRELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKL 188
Query: 588 IE--GKTVLTIAH-RLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMF 634
G T + + H ++ ++I V +KG++ ++G+ + P + F
Sbjct: 189 QRQLGVTTIYVTHDQVEAXTXGDRIAVXNKGELQQVGTPDEVYYKPVNTF 238
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 82.4 bits (202), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 112/225 (49%), Gaps = 14/225 (6%)
Query: 414 DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMY 473
+ V+ D++L I G +G SG GKSTL ++ L +G + I + + P
Sbjct: 15 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA- 73
Query: 474 LRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFD 532
+G V Q L+ ++ EN+ +G+ + + K ++I+ + N V+ + D
Sbjct: 74 -ERGVGMVFQSYALYPHLSVAENMSFGLKLAGA--KKEVIN--QRVNQVAEVLQLAHLLD 128
Query: 533 TIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--G 590
+ LSGGQ+QR+AI R L+ + + LLDE S LDA ++ I +L + G
Sbjct: 129 ----RKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLG 184
Query: 591 KTVLTIAH-RLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMF 634
+T++ + H ++ + +++I VLD G++ ++G L P F
Sbjct: 185 RTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRF 229
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 82.0 bits (201), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 112/225 (49%), Gaps = 14/225 (6%)
Query: 414 DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMY 473
+ V+ D++L I G +G SG GKSTL ++ L +G + I + + P
Sbjct: 15 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA- 73
Query: 474 LRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFD 532
+G V Q L+ ++ EN+ +G+ + + K ++I+ + N V+ + D
Sbjct: 74 -ERGVGMVFQSYALYPHLSVAENMSFGLKLAGA--KKEVIN--QRVNQVAEVLQLAHLLD 128
Query: 533 TIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--G 590
+ LSGGQ+QR+AI R L+ + + LLDE S LDA ++ I +L + G
Sbjct: 129 ----RKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLG 184
Query: 591 KTVLTIAH-RLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMF 634
+T++ + H ++ + +++I VLD G++ ++G L P F
Sbjct: 185 RTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRF 229
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 100/213 (46%), Gaps = 23/213 (10%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYL--- 474
L +++L I+ G S+ G SGSGKST ++ L P G++ ID + +LD L
Sbjct: 21 LKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80
Query: 475 -RSQIGSVSQEPTLFSG-TIYENIL------YGVNDSSSVTKSDIIHAAKEANAYGFVID 526
R +IG V Q+ L T EN+ Y S + + K A +
Sbjct: 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGEERRKRALECLKXAELEERFAN 140
Query: 527 FKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEK 586
K LSGGQ+QR+AIARAL I+L DE T ALD++ + ++K
Sbjct: 141 HKPN----------QLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKK 190
Query: 587 LIE--GKTVLTIAHRLSTIRKSNQICVLDKGKI 617
L E GKTV+ + H ++ R +I L G++
Sbjct: 191 LNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 117/227 (51%), Gaps = 20/227 (8%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDP---MYL 474
+ ++SL+++ G ++G SG GK+T ++ L +P G+I I D DP +++
Sbjct: 19 VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIG--DKLVADPEKGIFV 76
Query: 475 RSQ---IGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNG 530
+ I V Q L+ T+Y+NI + + V + +I +E G
Sbjct: 77 PPKDRDIAMVFQSYALYPHMTVYDNIAFPLK-LRKVPRQEIDQRVREVAEL-------LG 128
Query: 531 FDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE- 589
++ + LSGGQ+QR+A+ RA+++K ++ L+DE S LDA+ +++ ++KL
Sbjct: 129 LTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQ 188
Query: 590 -GKTVLTIAH-RLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMF 634
G T + + H ++ + ++I V+++G + ++GS + P + F
Sbjct: 189 LGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKPANTF 235
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/213 (30%), Positives = 102/213 (47%), Gaps = 23/213 (10%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYL--- 474
L +++L I+ G S++G SGSGKST+ ++ L P G++ ID + +LD L
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80
Query: 475 -RSQIGSVSQEPTLFSG-TIYENIL------YGVNDSSSVTKSDIIHAAKEANAYGFVID 526
R +IG V Q+ L T EN+ Y S + + K A
Sbjct: 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELE----- 135
Query: 527 FKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEK 586
+ + LSGGQ+QR+AIARAL I+L D+ T ALD++ + ++K
Sbjct: 136 -----ERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKK 190
Query: 587 LIE--GKTVLTIAHRLSTIRKSNQICVLDKGKI 617
L E GKTV+ + H ++ R +I L G++
Sbjct: 191 LNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 112/225 (49%), Gaps = 14/225 (6%)
Query: 414 DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMY 473
+ V+ D++L I G +G SG GKSTL ++ L +G + I + + P
Sbjct: 15 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA- 73
Query: 474 LRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFD 532
+G V Q L+ ++ EN+ +G+ + + K ++I+ + N V+ + D
Sbjct: 74 -ERGVGMVFQSYALYPHLSVAENMSFGLKLAGA--KKEVIN--QRVNQVAEVLQLAHLLD 128
Query: 533 TIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--G 590
+ LSGGQ+QR+AI R L+ + + LLD+ S LDA ++ I +L + G
Sbjct: 129 ----RKPKALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKRLG 184
Query: 591 KTVLTIAH-RLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMF 634
+T++ + H ++ + +++I VLD G++ ++G L P F
Sbjct: 185 RTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRF 229
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/213 (30%), Positives = 102/213 (47%), Gaps = 23/213 (10%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYL--- 474
L +++L I+ G S++G SGSGKST+ ++ L P G++ ID + +LD L
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80
Query: 475 -RSQIGSVSQEPTLFSG-TIYENIL------YGVNDSSSVTKSDIIHAAKEANAYGFVID 526
R +IG V Q+ L T EN+ Y S + + K A
Sbjct: 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELE----- 135
Query: 527 FKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEK 586
+ + LSGGQ+QR+AIARAL I+L D+ T ALD++ + ++K
Sbjct: 136 -----ERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKK 190
Query: 587 LIE--GKTVLTIAHRLSTIRKSNQICVLDKGKI 617
L E GKTV+ + H ++ R +I L G++
Sbjct: 191 LNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 79.3 bits (194), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 80/233 (34%), Positives = 124/233 (53%), Gaps = 24/233 (10%)
Query: 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDI---KELDPMY 473
+L +SL+ ++G + S+IGSSGSGKST + L P G I+++G +I ++ D
Sbjct: 21 VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQL 80
Query: 474 ----------LRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYG 522
LR+++ V Q L+S T+ EN++ ++K D A+E A
Sbjct: 81 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHD----ARE-RALK 135
Query: 523 FVIDFKNGFDTIV-GERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQ 581
++ K G D G+ + LSGGQ+QR++IARAL + +LL DE TSALD E V
Sbjct: 136 YLA--KVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVL 193
Query: 582 SAIEKLI-EGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLIKNPNS 632
+++L EGKT++ + H + R S+ + L +GKI E G + NP S
Sbjct: 194 RIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFGNPQS 246
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 79.0 bits (193), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 103/209 (49%), Gaps = 16/209 (7%)
Query: 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDI-----KELDP 471
IL +SL ++ G S+IG+SGSGKSTL +L L P GK+ ++G ++ KEL
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSL 78
Query: 472 MYLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNG 530
+ R ++G V Q L T EN++ V + KEA G + + G
Sbjct: 79 LRNR-KLGFVFQFHYLIPELTALENVI--------VPMLKMGKPKKEAKERGEYLLSELG 129
Query: 531 FDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEG 590
+ + LSGG++QR+AIARAL + +L DE T LD+ N V K+ EG
Sbjct: 130 LGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEG 189
Query: 591 KT-VLTIAHRLSTIRKSNQICVLDKGKIV 618
T ++ + H +++ + GK+V
Sbjct: 190 GTSIVMVTHERELAELTHRTLEMKDGKVV 218
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/226 (31%), Positives = 117/226 (51%), Gaps = 20/226 (8%)
Query: 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDI--KELDPMYL 474
+LND+SL + G + +IG+SG GK+TL L P +G+I + G I K +
Sbjct: 19 VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVR 78
Query: 475 RSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDT 533
++G + QE LF T+Y NI YG+ + T A+E +++ G
Sbjct: 79 ERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRT-------AQERQRIEAMLEL-TGISE 130
Query: 534 IVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI----- 588
+ G LSGGQ+QR A+ARAL +++LLDE SALD E L + E +I
Sbjct: 131 LAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALD---EQLRRQIREDMIAALRA 187
Query: 589 EGKTVLTIAH-RLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSM 633
GK+ + ++H R ++ +++I V+ +G+I++ S L + P +
Sbjct: 188 NGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQPADL 233
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 113/230 (49%), Gaps = 34/230 (14%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDG--VDIKELDPMYLR 475
L +++ I+ G +T+++G +G GKSTL + P +G+IL D +D M LR
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLR 83
Query: 476 SQIGSVSQEPT--LFSGTIYENILYGVND---SSSVTKSDIIHAAKEANAYGFVIDFKNG 530
IG V Q+P LFS ++Y+++ +G + + + +A K + G
Sbjct: 84 ESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALK-----------RTG 132
Query: 531 FDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE- 589
+ + + LS GQK+R+AIA L+ + K+L+LDE T+ LD V ++ L+E
Sbjct: 133 IEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMG---VSEIMKLLVEM 189
Query: 590 ----GKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHLIKNPNSMF 634
G T++ H + + + + V+ +G+++ G NP +F
Sbjct: 190 QKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQG-------NPKEVF 232
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 102/215 (47%), Gaps = 34/215 (15%)
Query: 404 NIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDG 463
N+ F Y + + + L+ + G + +V+G +G GKSTL LLL ++ P GKI +
Sbjct: 9 NLGFYY--QAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEV-- 64
Query: 464 VDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGF 523
IG V P FS Y V D + +S I+ + ++ +
Sbjct: 65 -----------YQSIGFV---PQFFSSPFA----YSVLDIVLMGRSTHINTFAKPKSHDY 106
Query: 524 -----VIDFKNGFDTIVGERGIM-LSGGQKQRIAIARALIKKSKILLLDEATSALDAENE 577
+D+ N T + +R LSGGQ+Q I IARA+ + K++LLDE TSALD N+
Sbjct: 107 QVAMQALDYLNL--THLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQ 164
Query: 578 YLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVL 612
+V S + L + + + + T + NQ+ +
Sbjct: 165 DIVLSLLIDLAQSQNMTVVF----TTHQPNQVVAI 195
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 62/233 (26%), Positives = 112/233 (48%), Gaps = 21/233 (9%)
Query: 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRS 476
IL +S +I+ G + +IG +G+GK+T ++ L P +G + + G ++ E +P +R
Sbjct: 30 ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRK 88
Query: 477 QIGSVSQEPTLF---SGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDT 533
I + +E + G Y + G SSS +++ A E G I
Sbjct: 89 LISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIK------- 141
Query: 534 IVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKL-IEGKT 592
+R S G +++ IARAL+ ++ +LDE TS LD N V+ +++ EG T
Sbjct: 142 ---DRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLT 198
Query: 593 VLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHL-----IKNPNSMFNKLMK 639
+L +H + + ++I ++ G IVE G+ L +N +F +++K
Sbjct: 199 ILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQNIEEVFEEVVK 251
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 92/181 (50%), Gaps = 34/181 (18%)
Query: 424 KIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILID-GVDIKELDPMYLRSQIGSVS 482
+I+ G + ++G +G GK+T +L + +P GK+ D V K P Y++++
Sbjct: 378 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYK---PQYIKAE----- 429
Query: 483 QEPTLFSGTIYENILYGVNDS---SSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERG 539
+ GT+YE +L ++ S S+ K++++ +ID +D V +
Sbjct: 430 -----YEGTVYE-LLSKIDSSKLNSNFYKTELLKPLG-------IIDL---YDRNVED-- 471
Query: 540 IMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEG--KTVLTIA 597
LSGG+ QR+AIA L++ + I LLDE ++ LD E V AI L+E KT L +
Sbjct: 472 --LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVE 529
Query: 598 H 598
H
Sbjct: 530 H 530
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 542 LSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRL 600
LSGG+ QR+AIA AL++K+ DE +S LD V I +L EGK VL + H L
Sbjct: 229 LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDL 288
Query: 601 STI 603
+ +
Sbjct: 289 AVL 291
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 101/218 (46%), Gaps = 24/218 (11%)
Query: 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRS 476
++ND+SL I SG M ++IG +G+GKSTL LL P +G+ + G ++ P L
Sbjct: 26 LINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALAR 85
Query: 477 QIGSVSQEPTL-FSGTIYENILYGVND-SSSVTKSDIIHAAKEANAYGFVI-DFKNGFDT 533
+ Q L F ++ E I G S + + + + D++
Sbjct: 86 TRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYR----- 140
Query: 534 IVGERGIMLSGGQKQRIAIARALIK------KSKILLLDEATSALDAENEYLVQSAIEKL 587
+LSGG++QR+ +AR L + + L LDE TSALD ++ + +L
Sbjct: 141 -------VLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQL 193
Query: 588 I--EGKTVLTIAHRLS-TIRKSNQICVLDKGKIVEIGS 622
E V + H L+ +++I +L +GK+V G+
Sbjct: 194 TRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGT 231
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 92/181 (50%), Gaps = 34/181 (18%)
Query: 424 KIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILID-GVDIKELDPMYLRSQIGSVS 482
+I+ G + ++G +G GK+T +L + +P GK+ D V K P Y++++
Sbjct: 364 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYK---PQYIKAE----- 415
Query: 483 QEPTLFSGTIYENILYGVNDS---SSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERG 539
+ GT+YE +L ++ S S+ K++++ +ID +D V +
Sbjct: 416 -----YEGTVYE-LLSKIDSSKLNSNFYKTELLKPLG-------IIDL---YDRNVED-- 457
Query: 540 IMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEG--KTVLTIA 597
LSGG+ QR+AIA L++ + I LLDE ++ LD E V AI L+E KT L +
Sbjct: 458 --LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVE 515
Query: 598 H 598
H
Sbjct: 516 H 516
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 542 LSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRL 600
LSGG+ QR+AIA AL++K+ DE +S LD V I +L EGK VL + H L
Sbjct: 215 LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDL 274
Query: 601 STI 603
+ +
Sbjct: 275 AVL 277
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 65.9 bits (159), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 91/186 (48%), Gaps = 34/186 (18%)
Query: 424 KIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILID-GVDIKELDPMYLRSQIGSVS 482
+I+ G + ++G +G GK+T L + +P GKI D V K P Y+++
Sbjct: 308 EIKKGEVIGIVGPNGIGKTTFVKXLAGVEEPTEGKIEWDLTVAYK---PQYIKAD----- 359
Query: 483 QEPTLFSGTIYENILYGVNDS---SSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERG 539
+ GT+YE +L ++ S S+ K++++ +ID +D V E
Sbjct: 360 -----YEGTVYE-LLSKIDASKLNSNFYKTELLKPLG-------IIDL---YDREVNE-- 401
Query: 540 IMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEG--KTVLTIA 597
LSGG+ QR+AIA L++ + I LLDE ++ LD E V AI L E KT L +
Sbjct: 402 --LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLXEKNEKTALVVE 459
Query: 598 HRLSTI 603
H + I
Sbjct: 460 HDVLXI 465
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 90/198 (45%), Gaps = 18/198 (9%)
Query: 414 DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQ--NGKILIDGVDIKELDP 471
+A +L L + ++ G + ++G +G+GKST +L P DGV
Sbjct: 34 NAFVLYRLPV-VKEGXVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGV------- 85
Query: 472 MYLRSQIGSVSQE--PTLFSGTIYENILYGVNDS-SSVTKSDIIHAAKEANAYGFVIDFK 528
+R+ G+ Q L +G I + D K +I K+A+ G + +
Sbjct: 86 --IRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVV 143
Query: 529 NGFD-TIVGERGIM-LSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEK 586
+ V ER I LSGG+ QR+AIA AL++ + DE +S LD AI +
Sbjct: 144 KALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRR 203
Query: 587 LI-EGKTVLTIAHRLSTI 603
L EGK+VL + H L+ +
Sbjct: 204 LSEEGKSVLVVEHDLAVL 221
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 70/260 (26%), Positives = 119/260 (45%), Gaps = 35/260 (13%)
Query: 400 IDFNNIRFSYPSRPDAVILND-LSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQ--- 455
I ++R Y R + D +SL I S+T+++G S SGKST+ + + P
Sbjct: 5 IRVEDLRAVYLVREGTIKAADGISLDILENSVTAIVGESASGKSTIIEAMTKTLPPNGRI 64
Query: 456 -NGKILIDGVDIKELDPMYLR----------SQIGSVSQEPTL-----FSGTIYENILYG 499
+G++L G D+ + LR Q S PT+ F T+ +G
Sbjct: 65 LSGRVLYKGKDLLTMREEELRKIRWKEIALVPQAAQQSLNPTMKVIEHFKDTVEA---HG 121
Query: 500 VNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKK 559
V S S++I A E + + ++ + LSGG KQR+ IA AL+
Sbjct: 122 VRWS----HSELIEKASEKLRM-----VRLNPEAVLNSYPLQLSGGMKQRVLIALALLLD 172
Query: 560 SKILLLDEATSALDAENE-YLVQSAIEKLIEGK-TVLTIAHRLSTIRK-SNQICVLDKGK 616
+L+LDE TSALD + +++Q E K T++ + H ++ + ++++ V+ G
Sbjct: 173 PVVLILDEPTSALDVLTQAHIIQLLKELKKMLKITLIFVTHDIAVAAELADKVAVIYGGN 232
Query: 617 IVEIGSYAHLIKNPNSMFNK 636
+VE S + KNP + +
Sbjct: 233 LVEYNSTFQIFKNPLHPYTR 252
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 105/220 (47%), Gaps = 20/220 (9%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYL--R 475
+ + LK+ G + ++IG++G+GK+T + L Q GKI+ +G DI P ++ R
Sbjct: 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITN-KPAHVINR 80
Query: 476 SQIGSVSQEPTLFSG-TIYENILYGV---NDSSSVTKSDIIHAAKEANAYGFVIDFKNGF 531
I V + +F T+YEN+ G D + K D+ ++
Sbjct: 81 XGIALVPEGRRIFPELTVYENLXXGAYNRKDKEGI-KRDL----------EWIFSLFPRL 129
Query: 532 DTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKL-IEG 590
+ + G LSGG++Q +AI RAL + K+L DE + L V I+K+ EG
Sbjct: 130 KERLKQLGGTLSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQEG 189
Query: 591 KTVLTIAHR-LSTIRKSNQICVLDKGKIVEIGSYAHLIKN 629
T+L + L ++ ++ VL+ G+IV G + L+ N
Sbjct: 190 TTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 105/225 (46%), Gaps = 17/225 (7%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDP--MYLR 475
L+ +S+ + G +T +IG +GSGKSTL ++ G++ + DI +P +Y
Sbjct: 23 LDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 476 SQIGSVSQEPTLFSGTIYENILYG-VNDSSSVTKS----DIIHAAKEANAYGF-VIDF-- 527
+ + L T+ EN+L G +N S S I +E F +++F
Sbjct: 83 GIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLK 142
Query: 528 -KNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEY-LVQSAIE 585
+ +D GE LSGGQ + + I RAL+ K++++DE + + + + +E
Sbjct: 143 LSHLYDRKAGE----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLE 198
Query: 586 KLIEGKTVLTIAHRLSTIRKS-NQICVLDKGKIVEIGSYAHLIKN 629
+G T L I HRL + + + V+ G+I+ G IKN
Sbjct: 199 LKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKN 243
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 60/225 (26%), Positives = 105/225 (46%), Gaps = 17/225 (7%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDP--MYLR 475
L+ +S+ + G +T +IG +GSGKSTL ++ G++ + DI +P +Y
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 476 SQIGSVSQEPTLFSGTIYENILYG-VNDSSSVTKS----DIIHAAKEANAYGF-VIDF-- 527
+ + L T+ EN+L G +N S S I +E F +++F
Sbjct: 83 GIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLK 142
Query: 528 -KNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEY-LVQSAIE 585
+ +D GE LSGGQ + + I RAL+ K++++D+ + + + + +E
Sbjct: 143 LSHLYDRKAGE----LSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNHVLE 198
Query: 586 KLIEGKTVLTIAHRLSTIRKS-NQICVLDKGKIVEIGSYAHLIKN 629
+G T L I HRL + + + V+ G+I+ G IKN
Sbjct: 199 LKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKN 243
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 105/225 (46%), Gaps = 17/225 (7%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDP--MYLR 475
L+ +S+ + G +T +IG +GSGKSTL ++ G++ + DI +P +Y
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 476 SQIGSVSQEPTLFSGTIYENILY-----GVNDSSSVTKSDIIHAAKEANAYGF-VIDF-- 527
+ + L T+ EN+L G + +S+ I +E F +++F
Sbjct: 83 GIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLK 142
Query: 528 -KNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEY-LVQSAIE 585
+ +D GE LSGGQ + + I RAL+ K++++DE + + + + +E
Sbjct: 143 LSHLYDRKAGE----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLE 198
Query: 586 KLIEGKTVLTIAHRLSTIRKS-NQICVLDKGKIVEIGSYAHLIKN 629
+G T L I HRL + + + V+ G+I+ G IKN
Sbjct: 199 LKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKN 243
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 98/223 (43%), Gaps = 18/223 (8%)
Query: 414 DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLL--RLYDPQNGKILIDGVDIKELDP 471
D IL LSL + G + +++G +GSGKSTL+ L Y+ G + G D+ L P
Sbjct: 32 DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSP 91
Query: 472 MYLRSQ-IGSVSQEPTLFSGTIYE-------NILYGVNDSSSVTKSDIIHAAKEANAYGF 523
+ I Q P G + N + ++ + D +E A
Sbjct: 92 EDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIAL-- 149
Query: 524 VIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSA 583
K D + + SGG+K+R I + + + ++ +LDE+ S LD + +V
Sbjct: 150 ---LKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADG 206
Query: 584 IEKLIEGKT---VLTIAHRLSTIRKSNQICVLDKGKIVEIGSY 623
+ L +GK ++T R+ K + + VL +G+IV+ G +
Sbjct: 207 VNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDF 249
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 98/223 (43%), Gaps = 18/223 (8%)
Query: 414 DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLL--RLYDPQNGKILIDGVDIKELDP 471
D IL LSL + G + +++G +GSGKSTL+ L Y+ G + G D+ L P
Sbjct: 13 DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSP 72
Query: 472 MYLRSQ-IGSVSQEPTLFSGTIYE-------NILYGVNDSSSVTKSDIIHAAKEANAYGF 523
+ I Q P G + N + ++ + D +E A
Sbjct: 73 EDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIAL-- 130
Query: 524 VIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSA 583
K D + + SGG+K+R I + + + ++ +LDE+ S LD + +V
Sbjct: 131 ---LKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADG 187
Query: 584 IEKLIEGKT---VLTIAHRLSTIRKSNQICVLDKGKIVEIGSY 623
+ L +GK ++T R+ K + + VL +G+IV+ G +
Sbjct: 188 VNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDF 230
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 59/115 (51%), Gaps = 10/115 (8%)
Query: 535 VGERGIMLSGGQKQRIAIARALIKKS---KILLLDEATSALDAENEYLVQSAIEKLIE-G 590
+G+ LSGG+ QRI +A L K+ + +LDE T L E+ + + +L++ G
Sbjct: 799 LGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRG 858
Query: 591 KTVLTIAHRLSTIRKSNQICVL------DKGKIVEIGSYAHLIKNPNSMFNKLMK 639
TV+ I H L I+ ++ I L + G IV G+ + KNP+S + +K
Sbjct: 859 NTVIVIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEIAKNPHSYTGRFLK 913
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 9/100 (9%)
Query: 542 LSGGQKQRIAIARALIK--KSKILLLDEATSALDAENEYLVQSAIEKLIE-GKTVLTIAH 598
LSGG+ QRI +A + I +LDE T L + + ++KL + G TV+ + H
Sbjct: 465 LSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEH 524
Query: 599 RLSTIRKSNQICVLDKG------KIVEIGSYAHLIKNPNS 632
IR ++ I + G ++V G+ L+KNP+S
Sbjct: 525 DEEVIRNADHIIDIGPGGGTNGGRVVFQGTVDELLKNPDS 564
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/243 (23%), Positives = 117/243 (48%), Gaps = 36/243 (14%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGK--ILIDGVDIKELDPMYLR 475
L LS ++++G + ++G +G+GKST LL R+ +GK I G ++ L
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKST---LLARMAGMTSGKGSIQFAGQPLEAWSATKLA 72
Query: 476 SQIGSVSQEPT-LFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTI 534
+SQ+ T F+ ++ + +D T++++++ A A D
Sbjct: 73 LHRAYLSQQQTPPFATPVWHYLTLHQHDK---TRTELLNDVAGALA----------LDDK 119
Query: 535 VGERGIMLSGGQKQRIAIARALIK-------KSKILLLDEATSALDAENEYLVQSAIEKL 587
+G LSGG+ QR+ +A +++ ++LLLD+ ++LD QSA++K+
Sbjct: 120 LGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVAQ----QSALDKI 175
Query: 588 I-----EGKTVLTIAHRLS-TIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLMKYQ 641
+ +G ++ +H L+ T+R +++ +L GK++ G ++ PN M ++
Sbjct: 176 LSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPPNLAQAYGMNFR 235
Query: 642 TMD 644
+D
Sbjct: 236 RLD 238
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/243 (23%), Positives = 116/243 (47%), Gaps = 36/243 (14%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGK--ILIDGVDIKELDPMYLR 475
L LS ++++G + ++G +G+GKST LL R+ +GK I G ++ L
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKST---LLARMAGMTSGKGSIQFAGQPLEAWSATKLA 72
Query: 476 SQIGSVSQEPT-LFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTI 534
+SQ+ T F+ ++ + +D T++++++ A A D
Sbjct: 73 LHRAYLSQQQTPPFATPVWHYLTLHQHDK---TRTELLNDVAGALA----------LDDK 119
Query: 535 VGERGIMLSGGQKQRIAIARALIK-------KSKILLLDEATSALDAENEYLVQSAIEKL 587
+G LSGG+ QR+ +A +++ ++LLLD+ +LD QSA++K+
Sbjct: 120 LGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLDVAQ----QSALDKI 175
Query: 588 I-----EGKTVLTIAHRLS-TIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLMKYQ 641
+ +G ++ +H L+ T+R +++ +L GK++ G ++ PN M ++
Sbjct: 176 LSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPPNLAQAYGMNFR 235
Query: 642 TMD 644
+D
Sbjct: 236 RLD 238
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 57/230 (24%), Positives = 110/230 (47%), Gaps = 36/230 (15%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGK--ILIDGVDIKELDPMYLR 475
L LS ++++G + ++G +G+GKST LL R +GK I G ++ L
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKST---LLARXAGXTSGKGSIQFAGQPLEAWSATKLA 72
Query: 476 SQIGSVSQEPT-LFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTI 534
+SQ+ T F+ ++ + +D T++++++ A A D
Sbjct: 73 LHRAYLSQQQTPPFATPVWHYLTLHQHDK---TRTELLNDVAGALA----------LDDK 119
Query: 535 VGERGIMLSGGQKQRIAIARALIK-------KSKILLLDEATSALDAENEYLVQSAIEKL 587
+G LSGG+ QR+ +A +++ ++LLLDE ++LD QSA++K+
Sbjct: 120 LGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQ----QSALDKI 175
Query: 588 I-----EGKTVLTIAHRLS-TIRKSNQICVLDKGKIVEIGSYAHLIKNPN 631
+ +G ++ +H L+ T+R +++ +L GK + G ++ PN
Sbjct: 176 LSALCQQGLAIVXSSHDLNHTLRHAHRAWLLKGGKXLASGRREEVLTPPN 225
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 57/230 (24%), Positives = 110/230 (47%), Gaps = 36/230 (15%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGK--ILIDGVDIKELDPMYLR 475
L LS ++++G + ++G +G+GKST LL R +GK I G ++ L
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKST---LLARXAGXTSGKGSIQFAGQPLEAWSATKLA 72
Query: 476 SQIGSVSQEPT-LFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTI 534
+SQ+ T F+ ++ + +D T++++++ A A D
Sbjct: 73 LHRAYLSQQQTPPFATPVWHYLTLHQHDK---TRTELLNDVAGALA----------LDDK 119
Query: 535 VGERGIMLSGGQKQRIAIARALIK-------KSKILLLDEATSALDAENEYLVQSAIEKL 587
+G LSGG+ QR+ +A +++ ++LLLDE ++LD QSA++K+
Sbjct: 120 LGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQ----QSALDKI 175
Query: 588 I-----EGKTVLTIAHRLS-TIRKSNQICVLDKGKIVEIGSYAHLIKNPN 631
+ +G ++ +H L+ T+R +++ +L GK + G ++ PN
Sbjct: 176 LSALSQQGLAIVXSSHDLNHTLRHAHRAWLLKGGKXLASGRREEVLTPPN 225
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 58/233 (24%), Positives = 104/233 (44%), Gaps = 24/233 (10%)
Query: 404 NIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDP----QNGKI 459
IR + S IL ++L + G + +++G +G+GKSTL +L DP + G+I
Sbjct: 5 EIRDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAG--DPEYTVERGEI 62
Query: 460 LIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEAN 519
L+DG +I EL P R++ G LF Y + GV ++ + + +E
Sbjct: 63 LLDGENILELSPDE-RARKG-------LFLAFQYPVEVPGVTIANFLRLALQAKLGREVG 114
Query: 520 AYGFVIDFKNGFDTIVGERGIM-------LSGGQKQRIAIARALIKKSKILLLDEATSAL 572
F K + + + + SGG+K+R I + L+ + +LDE S L
Sbjct: 115 VAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGL 174
Query: 573 DAENEYLVQSAIEKLIE---GKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGS 622
D + +V + + G V+T R+ + +++ V+ G++V G
Sbjct: 175 DIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGG 227
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 85/205 (41%), Gaps = 45/205 (21%)
Query: 407 FSYPSRPDAVILNDLSLKIQSGSMTS-----VIGSSGSGKSTLAMLLLRLYDPQNGKILI 461
FSYPS D L ++ G + ++G +G+GK+TL LL P G+
Sbjct: 354 FSYPSLKKT--QGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQ--- 408
Query: 462 DGVDIKELDPMYLRSQIGSVSQEP----TLFSGTIYENILYGVNDS--SSVTKSDIIHAA 515
DI +L+ VS +P F GT+ + + + ++D++
Sbjct: 409 ---DIPKLN----------VSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPL 455
Query: 516 KEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAE 575
+ D I+ + LSGG+ QR+AI AL + I L+DE ++ LD+E
Sbjct: 456 R--------------IDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSE 501
Query: 576 NEYLVQSAIEKLI--EGKTVLTIAH 598
+ I + I KT + H
Sbjct: 502 QRIICSKVIRRFILHNKKTAFIVEH 526
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 89/201 (44%), Gaps = 21/201 (10%)
Query: 426 QSGSMTSVIGSSGSGKSTLAMLLL--------RLYDPQNGKILID---GVDIKELDPMYL 474
+ G + ++G++G GKST +L R DP + +I G +++ L
Sbjct: 101 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKML 160
Query: 475 RSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTI 534
I ++ + + I I V + K + + ++ Y ++ +N
Sbjct: 161 EDDIKAIIK--PQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLEN----- 213
Query: 535 VGERGI-MLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKT 592
V +R I LSGG+ QR AI + ++++ + + DE +S LD + I L+ K
Sbjct: 214 VLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKY 273
Query: 593 VLTIAHRLSTIRK-SNQICVL 612
V+ + H LS + S+ +C++
Sbjct: 274 VICVEHDLSVLDYLSDFVCII 294
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 87/184 (47%), Gaps = 30/184 (16%)
Query: 416 VILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKE-LDPMYL 474
++LN L+++ + G +G GKSTL + NG++ DG +E +Y+
Sbjct: 449 ILLNKTQLRLKRARRYGICGPNGCGKSTLMRAI------ANGQV--DGFPTQEECRTVYV 500
Query: 475 RSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTI 534
I + ++ ++E+ GV ++ K +I +GF D +
Sbjct: 501 EHDIDGTHSDTSVLD-FVFES---GVGTKEAI-KDKLIE-------FGFT-------DEM 541
Query: 535 VGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVL 594
+ LSGG K ++A+ARA+++ + ILLLDE T+ LD N + + + G T +
Sbjct: 542 IAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTC--GITSI 599
Query: 595 TIAH 598
TI+H
Sbjct: 600 TISH 603
Score = 35.4 bits (80), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Query: 397 KGEIDFNNIRFSYP--SRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDP 454
K + N+ F YP S+P + D++ + S +VIG +G+GKSTL +L P
Sbjct: 669 KAIVKVTNMEFQYPGTSKPQ---ITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLP 725
Query: 455 QNGKI 459
+G++
Sbjct: 726 TSGEV 730
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 33/54 (61%)
Query: 542 LSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLT 595
LSGGQK ++ +A ++ +++LDE T+ LD ++ + A+++ G ++T
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIIT 955
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 86/184 (46%), Gaps = 30/184 (16%)
Query: 416 VILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKE-LDPMYL 474
++LN L+++ + G +G GKSTL + NG++ DG +E +Y+
Sbjct: 449 ILLNKTQLRLKRARRYGICGPNGCGKSTLXRAI------ANGQV--DGFPTQEECRTVYV 500
Query: 475 RSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTI 534
I + ++ ++E+ GV ++ K +I +GF D
Sbjct: 501 EHDIDGTHSDTSVLD-FVFES---GVGTKEAI-KDKLIE-------FGFT-------DEX 541
Query: 535 VGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVL 594
+ LSGG K ++A+ARA+++ + ILLLDE T+ LD N + + + G T +
Sbjct: 542 IAXPISALSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTC--GITSI 599
Query: 595 TIAH 598
TI+H
Sbjct: 600 TISH 603
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 397 KGEIDFNNIRFSYP--SRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDP 454
K + N F YP S+P + D++ + S +VIG +G+GKSTL +L P
Sbjct: 669 KAIVKVTNXEFQYPGTSKPQ---ITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLP 725
Query: 455 QNGKI 459
+G++
Sbjct: 726 TSGEV 730
Score = 32.7 bits (73), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 33/54 (61%)
Query: 542 LSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLT 595
LSGGQK ++ +A ++ +++LDE T+ LD ++ + A+++ G ++T
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIIT 955
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 86/184 (46%), Gaps = 30/184 (16%)
Query: 416 VILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKE-LDPMYL 474
++LN L+++ + G +G GKSTL + NG++ DG +E +Y+
Sbjct: 443 ILLNKTQLRLKRARRYGICGPNGCGKSTLXRAI------ANGQV--DGFPTQEECRTVYV 494
Query: 475 RSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTI 534
I + ++ ++E+ GV ++ K +I +GF D
Sbjct: 495 EHDIDGTHSDTSVLD-FVFES---GVGTKEAI-KDKLIE-------FGFT-------DEX 535
Query: 535 VGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVL 594
+ LSGG K ++A+ARA+++ + ILLLDE T+ LD N + + + G T +
Sbjct: 536 IAXPISALSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTC--GITSI 593
Query: 595 TIAH 598
TI+H
Sbjct: 594 TISH 597
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 397 KGEIDFNNIRFSYP--SRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDP 454
K + N F YP S+P + D++ + S +VIG +G+GKSTL +L P
Sbjct: 663 KAIVKVTNXEFQYPGTSKPQ---ITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLP 719
Query: 455 QNGKI 459
+G++
Sbjct: 720 TSGEV 724
Score = 32.7 bits (73), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 33/54 (61%)
Query: 542 LSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLT 595
LSGGQK ++ +A ++ +++LDE T+ LD ++ + A+++ G ++T
Sbjct: 896 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIIT 949
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 96/192 (50%), Gaps = 27/192 (14%)
Query: 414 DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMY 473
D +L +++ I+ G++ + G +G GK+TL + P G+I+ +GV I +
Sbjct: 21 DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITK----- 75
Query: 474 LRSQIGSVSQE---PTLFSGTIYENI---LYGVNDSSSVTKSDIIHAAKEANAYGFVIDF 527
++ +I + +E P S Y LYGV V K++I+ A + V+D
Sbjct: 76 VKGKIFFLPEEIIVPRKISVEDYLKAVASLYGV----KVNKNEIMDALESVE----VLDL 127
Query: 528 KNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKL 587
K GE LS G +R+ +A L+ ++I +LD+ A+D ++++ V +I ++
Sbjct: 128 KKKL----GE----LSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEI 179
Query: 588 IEGKTVLTIAHR 599
++ K ++ I+ R
Sbjct: 180 LKEKGIVIISSR 191
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 80/189 (42%), Gaps = 46/189 (24%)
Query: 426 QSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEP 485
+ G + ++G +G GK+T A +L+ G+I D GSV+ E
Sbjct: 292 KEGEIIGILGPNGIGKTTFARILV-------GEITADE---------------GSVTPEK 329
Query: 486 TLFS-----------GTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTI 534
+ S GT+ + + D+ S + K N + + N
Sbjct: 330 QILSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVND---- 385
Query: 535 VGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVL 594
LSGG+ Q++ IA L K++ + +LD+ +S LD E Y+V AI+++ + +
Sbjct: 386 -------LSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAV 438
Query: 595 T--IAHRLS 601
T I H LS
Sbjct: 439 TFIIDHDLS 447
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 37/60 (61%)
Query: 541 MLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRL 600
+LSGG QR+ +A +L++++ + + D+ +S LD + AI +L++ K V+ + H L
Sbjct: 138 ILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDL 197
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 59/115 (51%), Gaps = 10/115 (8%)
Query: 535 VGERGIMLSGGQKQRIAIARALIKKSK---ILLLDEATSALDAENEYLVQSAIEKLIE-G 590
+G+ LSGG+ QR+ +A L ++S + +LDE T+ L ++ + + +L++ G
Sbjct: 839 LGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNG 898
Query: 591 KTVLTIAHRLSTIRKSNQICVLDK------GKIVEIGSYAHLIKNPNSMFNKLMK 639
TVL I H L I+ ++ I L G+IV +G+ + + S + +K
Sbjct: 899 DTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEVKESHTGRYLK 953
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLL 449
L ++S+KI G+ +V G SGSGKSTL +L
Sbjct: 640 LKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 671
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 59/115 (51%), Gaps = 10/115 (8%)
Query: 535 VGERGIMLSGGQKQRIAIARALIKKSK---ILLLDEATSALDAENEYLVQSAIEKLIE-G 590
+G+ LSGG+ QR+ +A L ++S + +LDE T+ L ++ + + +L++ G
Sbjct: 537 LGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNG 596
Query: 591 KTVLTIAHRLSTIRKSNQICVLDK------GKIVEIGSYAHLIKNPNSMFNKLMK 639
TVL I H L I+ ++ I L G+IV +G+ + + S + +K
Sbjct: 597 DTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEVKESHTGRYLK 651
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 20/27 (74%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTL 444
L ++S+KI G+ +V G SGSGKSTL
Sbjct: 338 LKNVSVKIPLGTFVAVTGVSGSGKSTL 364
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 59/115 (51%), Gaps = 10/115 (8%)
Query: 535 VGERGIMLSGGQKQRIAIARALIKKSK---ILLLDEATSALDAENEYLVQSAIEKLIE-G 590
+G+ LSGG+ QR+ +A L ++S + +LDE T+ L ++ + + +L++ G
Sbjct: 839 LGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNG 898
Query: 591 KTVLTIAHRLSTIRKSNQICVLDK------GKIVEIGSYAHLIKNPNSMFNKLMK 639
TVL I H L I+ ++ I L G+IV +G+ + + S + +K
Sbjct: 899 DTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEVKESHTGRYLK 953
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 20/27 (74%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTL 444
L ++S+KI G+ +V G SGSGKSTL
Sbjct: 640 LKNVSVKIPLGTFVAVTGVSGSGKSTL 666
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 59/115 (51%), Gaps = 10/115 (8%)
Query: 535 VGERGIMLSGGQKQRIAIARALIKKSK---ILLLDEATSALDAENEYLVQSAIEKLIE-G 590
+G+ LSGG+ QRI +A L + + + +LDE T+ L + +Q + KL++ G
Sbjct: 724 LGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAG 783
Query: 591 KTVLTIAHRLSTIRKSNQICVL------DKGKIVEIGSYAHLIKNPNSMFNKLMK 639
TV+ + H++ + S+ + + D G++V G+ A + + S+ ++
Sbjct: 784 NTVIAVEHKMQVVAASDWVLDIGPGAGEDGGRLVAQGTPAEVAQAAGSVTAPYLR 838
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 20/27 (74%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTL 444
L++L ++ G MTSV G SGSGKSTL
Sbjct: 513 LDNLDVRFPLGVMTSVTGVSGSGKSTL 539
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 4/82 (4%)
Query: 535 VGERGIMLSGGQKQRIAIARALIKKS---KILLLDEATSALDAENEYLVQSAIEKLIE-G 590
+G+ LSGG+ QR+ +A L K+S + +LDE T+ L ++ + + I L++ G
Sbjct: 857 LGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKG 916
Query: 591 KTVLTIAHRLSTIRKSNQICVL 612
TV+ I H L I+ S+ I L
Sbjct: 917 NTVIVIEHNLDVIKTSDWIIDL 938
Score = 37.0 bits (84), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 9/101 (8%)
Query: 542 LSGGQKQRIAIARALIKK--SKILLLDEATSAL-DAENEYLVQSAIEKLIEGKTVLTIAH 598
LSGG+ QRI +A + + +LDE + L +N L+++ G T++ + H
Sbjct: 522 LSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEH 581
Query: 599 RLSTIRKSNQICVLDKG------KIVEIGSYAHLIKNPNSM 633
TI ++ I + G +IV G Y L++N +S+
Sbjct: 582 DEDTIEHADWIVDIGPGAGEHGGRIVHSGPYDELLRNKDSI 622
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 76/163 (46%), Gaps = 11/163 (6%)
Query: 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQ-NGKILIDGVDIKEL--DPMY 473
IL +S +I G + G +G+GK+TL + +L Y+P +G + + G ++
Sbjct: 36 ILKKISWQIAKGDKWILYGLNGAGKTTL-LNILNAYEPATSGTVNLFGKXPGKVGYSAET 94
Query: 474 LRSQIGSVSQ---EPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNG 530
+R IG VS E + + ++ G S V + EA+ ++
Sbjct: 95 VRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGXSAK 154
Query: 531 FDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALD 573
+G LS G+KQR+ IARAL + ++L+LDE + LD
Sbjct: 155 AQQYIG----YLSTGEKQRVXIARALXGQPQVLILDEPAAGLD 193
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 88/187 (47%), Gaps = 20/187 (10%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQ 477
L +++L++ +G ++G +GSGK+TL + L P +G I I+G++++++ R+
Sbjct: 21 LENINLEV-NGEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI-----RNY 73
Query: 478 IGSVSQEPTLFS-GTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVG 536
I + P + G +I+Y + + + + K K G + I+
Sbjct: 74 IRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKA---------LKLG-EEILR 123
Query: 537 ERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTI 596
+ LS GQ + + AL + +I+ LDE +DA +++ I++ GK + +
Sbjct: 124 RKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEY--GKEGILV 181
Query: 597 AHRLSTI 603
H L +
Sbjct: 182 THELDML 188
>pdb|1I3Q|B Chain B, Rna Polymerase Ii Crystal Form I At 3.1 A Resolution
pdb|1I50|B Chain B, Rna Polymerase Ii Crystal Form Ii At 2.8 A Resolution
pdb|1I6H|B Chain B, Rna Polymerase Ii Elongation Complex
pdb|1K83|B Chain B, Crystal Structure Of Yeast Rna Polymerase Ii Complexed
With The Inhibitor Alpha Amanitin
pdb|1NIK|B Chain B, Wild Type Rna Polymerase Ii
pdb|1NT9|B Chain B, Complete 12-Subunit Rna Polymerase Ii
pdb|1PQV|B Chain B, Rna Polymerase Ii-Tfiis Complex
pdb|1R5U|B Chain B, Rna Polymerase Ii Tfiib Complex
pdb|1SFO|B Chain B, Rna Polymerase Ii Strand Separated Elongation Complex
pdb|1R9S|B Chain B, Rna Polymerase Ii Strand Separated Elongation Complex,
Matched Nucleotide
pdb|1R9T|B Chain B, Rna Polymerase Ii Strand Separated Elongation Complex,
Mismatched Nucleotide
pdb|1TWA|B Chain B, Rna Polymerase Ii Complexed With Atp
pdb|1TWC|B Chain B, Rna Polymerase Ii Complexed With Gtp
pdb|1TWF|B Chain B, Rna Polymerase Ii Complexed With Utp At 2.3 A Resolution
pdb|1TWG|B Chain B, Rna Polymerase Ii Complexed With Ctp
pdb|1TWH|B Chain B, Rna Polymerase Ii Complexed With 2'datp
pdb|1WCM|B Chain B, Complete 12-Subunit Rna Polymerase Ii At 3.8 Ang
pdb|1Y1W|B Chain B, Complete Rna Polymerase Ii Elongation Complex
pdb|1Y77|B Chain B, Complete Rna Polymerase Ii Elongation Complex With
Substrate Analogue Gmpcpp
pdb|1Y1V|B Chain B, Refined Rna Polymerase Ii-tfiis Complex
pdb|1Y1Y|B Chain B, Rna Polymerase Ii-Tfiis-DnaRNA COMPLEX
pdb|2B63|B Chain B, Complete Rna Polymerase Ii-Rna Inhibitor Complex
pdb|2B8K|B Chain B, 12-Subunit Rna Polymerase Ii
pdb|2E2H|B Chain B, Rna Polymerase Ii Elongation Complex At 5 Mm Mg2+ With Gtp
pdb|2E2I|B Chain B, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With 2'-
Dgtp
pdb|2E2J|B Chain B, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With
Gmpcpp
pdb|2NVQ|B Chain B, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
2'dutp
pdb|2NVT|B Chain B, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
Gmpcpp
pdb|2NVX|B Chain B, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With 2'-
Dutp
pdb|2NVY|B Chain B, Rna Polymerase Ii Form Ii In 150 Mm Mn+2
pdb|2NVZ|B Chain B, Rna Polymerase Ii Elongation Complex With Utp, Updated
112006
pdb|2JA5|B Chain B, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
A
pdb|2JA6|B Chain B, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
B
pdb|2JA7|B Chain B, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
C
pdb|2JA7|N Chain N, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
C
pdb|2JA8|B Chain B, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
D
pdb|2YU9|B Chain B, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
Utp
pdb|2R7Z|B Chain B, Cisplatin Lesion Containing Rna Polymerase Ii Elongation
Complex
pdb|2R92|B Chain B, Elongation Complex Of Rna Polymerase Ii With Artificial
Rdrp Scaffold
pdb|2R93|B Chain B, Elongation Complex Of Rna Polymerase Ii With A Hepatitis
Delta Virus-Derived Rna Stem Loop
pdb|2VUM|B Chain B, Alpha-Amanitin Inhibited Complete Rna Polymerase Ii
Elongation Complex
pdb|3CQZ|B Chain B, Crystal Structure Of 10 Subunit Rna Polymerase Ii In
Complex With The Inhibitor Alpha-Amanitin
pdb|3FKI|B Chain B, 12-Subunit Rna Polymerase Ii Refined With Zn-Sad Data
pdb|3GTG|B Chain B, Backtracked Rna Polymerase Ii Complex With 12mer Rna
pdb|3GTJ|B Chain B, Backtracked Rna Polymerase Ii Complex With 13mer Rna
pdb|3GTK|B Chain B, Backtracked Rna Polymerase Ii Complex With 18mer Rna
pdb|3GTL|B Chain B, Backtracked Rna Polymerase Ii Complex With 13mer With G<>u
Mismatch
pdb|3GTM|B Chain B, Co-Complex Of Backtracked Rna Polymerase Ii With Tfiis
pdb|3GTO|B Chain B, Backtracked Rna Polymerase Ii Complex With 15mer Rna
pdb|3GTP|B Chain B, Backtracked Rna Polymerase Ii Complex With 24mer Rna
pdb|3GTQ|B Chain B, Backtracked Rna Polymerase Ii Complex Induced By Damage
pdb|3H3V|C Chain C, Yeast Rnap Ii Containing Poly(A)-Signal Sequence In The
Active Site
pdb|3HOU|B Chain B, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
pdb|3HOU|N Chain N, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
pdb|3HOV|B Chain B, Complete Rna Polymerase Ii Elongation Complex Ii
pdb|3HOW|B Chain B, Complete Rna Polymerase Ii Elongation Complex Iii With A
T-U Mismatch And A Frayed Rna 3'-Uridine
pdb|3HOX|B Chain B, Complete Rna Polymerase Ii Elongation Complex V
pdb|3HOY|B Chain B, Complete Rna Polymerase Ii Elongation Complex Vi
pdb|3HOZ|B Chain B, Complete Rna Polymerase Ii Elongation Complex Iv With A
T-U Mismatch And A Frayed Rna 3'-Guanine
pdb|3I4M|B Chain B, 8-oxoguanine Containing Rna Polymerase Ii Elongation
Complex D
pdb|3I4N|B Chain B, 8-oxoguanine Containing Rna Polymerase Ii Elongation
Complex E
pdb|3K1F|B Chain B, Crystal Structure Of Rna Polymerase Ii In Complex With
Tfiib
pdb|3K7A|B Chain B, Crystal Structure Of An Rna Polymerase Ii-Tfiib Complex
pdb|3M3Y|B Chain B, Rna Polymerase Ii Elongation Complex C
pdb|3M4O|B Chain B, Rna Polymerase Ii Elongation Complex B
pdb|3PO2|B Chain B, Arrested Rna Polymerase Ii Elongation Complex
pdb|3PO3|B Chain B, Arrested Rna Polymerase Ii Reactivation Intermediate
pdb|3QT1|B Chain B, Rna Polymerase Ii Variant Containing A Chimeric Rpb9-C11
Subunit
pdb|3RZD|B Chain B, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
pdb|3RZO|B Chain B, Rna Polymerase Ii Initiation Complex With A 4-Nt Rna
pdb|3S14|B Chain B, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
pdb|3S15|B Chain B, Rna Polymerase Ii Initiation Complex With A 7-Nt Rna
pdb|3S16|B Chain B, Rna Polymerase Ii Initiation Complex With An 8-Nt Rna
pdb|3S17|B Chain B, Rna Polymerase Ii Initiation Complex With A 9-Nt Rna
pdb|3S1M|B Chain B, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
(Variant 1)
pdb|3S1N|B Chain B, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
(Variant 2)
pdb|3S1Q|B Chain B, Rna Polymerase Ii Initiation Complex With A 5-Nt 3'-Deoxy
Rna Soaked With Atp
pdb|3S1R|B Chain B, Rna Polymerase Ii Initiation Complex With A 5-Nt 3'-Deoxy
Rna Soaked With Gtp
pdb|3S2D|B Chain B, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
Containing A 5br- U
pdb|3S2H|B Chain B, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
Containing A 2[prime]-Iodo Atp
pdb|3J0K|B Chain B, Orientation Of Rna Polymerase Ii Within The Human
Vp16-Mediator-Pol Ii-Tfiif Assembly
pdb|4A3C|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid
pdb|4A3B|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid
pdb|4A3D|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid
pdb|4A3E|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid And Soaked With Ampcpp
pdb|4A3F|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid And Soaked With Ampcpp
pdb|4A3J|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid And Soaked With Gmpcpp
pdb|4A3K|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid
pdb|4A3L|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid And Soaked With Ampcpp
pdb|4A3M|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid And Soaked With Ampcpp
pdb|4A3G|B Chain B, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid
pdb|4A3I|B Chain B, Rna Polymerase Ii Binary Complex With Dna
pdb|4A93|B Chain B, Rna Polymerase Ii Elongation Complex Containing A Cpd
Lesion
pdb|4BBR|B Chain B, Structure Of Rna Polymerase Ii-tfiib Complex
pdb|4BBS|B Chain B, Structure Of An Initially Transcribing Rna Polymerase Ii-
Tfiib Complex
Length = 1224
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Query: 489 SGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQ 548
G I E+I Y VND ++ K GFVI + +G RG L +++
Sbjct: 294 DGEILEHICYDVNDWQ------MLEMLKPCVEDGFVIQDRETALDFIGRRGTALGIKKEK 347
Query: 549 RIAIARALIKKS 560
RI A+ +++K
Sbjct: 348 RIQYAKDILQKE 359
>pdb|3N41|F Chain F, Crystal Structure Of The Mature Envelope Glycoprotein
Complex (Spontaneous Cleavage) Of Chikungunya Virus.
pdb|3N42|F Chain F, Crystal Structures Of The Mature Envelope Glycoprotein
Complex (Furin Cleavage) Of Chikungunya Virus.
pdb|3N43|F Chain F, Crystal Structures Of The Mature Envelope Glycoprotein
Complex (Trypsin Cleavage) Of Chikungunya Virus.
pdb|3N44|F Chain F, Crystal Structure Of The Mature Envelope Glycoprotein
Complex (Trypsin Cleavage; Osmium Soak) Of Chikungunya
Virus
Length = 473
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%)
Query: 572 LDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYA 624
DAEN L ++ +EK KT A+R T S ++ VL +G + + +YA
Sbjct: 118 CDAENTQLSEAHVEKSESCKTEFASAYRAHTASASAKLRVLYQGNNITVTAYA 170
>pdb|3N40|F Chain F, Crystal Structure Of The Immature Envelope Glycoprotein
Complex Of Chikungunya Virus
Length = 393
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%)
Query: 572 LDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAH 625
DAEN L ++ +EK KT A+R T S ++ VL +G + + +YA+
Sbjct: 98 CDAENTQLSEAHVEKSESCKTEFASAYRAHTASASAKLRVLYQGNNITVTAYAN 151
>pdb|2XFB|A Chain A, The Chikungunya E1 E2 Envelope Glycoprotein Complex Fit
Into The Sindbis Virus Cryo-Em Map
pdb|2XFB|D Chain D, The Chikungunya E1 E2 Envelope Glycoprotein Complex Fit
Into The Sindbis Virus Cryo-Em Map
pdb|2XFB|F Chain F, The Chikungunya E1 E2 Envelope Glycoprotein Complex Fit
Into The Sindbis Virus Cryo-Em Map
pdb|2XFB|H Chain H, The Chikungunya E1 E2 Envelope Glycoprotein Complex Fit
Into The Sindbis Virus Cryo-Em Map
Length = 391
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%)
Query: 572 LDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAH 625
DAEN L ++ +EK KT A+R T S ++ VL +G + + +YA+
Sbjct: 96 CDAENTQLSEAHVEKSESCKTEFASAYRAHTASASAKLRVLYQGNNITVTAYAN 149
>pdb|2XFC|A Chain A, The Chikungunya E1 E2 Envelope Glycoprotein Complex Fit
Into The Semliki Forest Virus Cryo-Em Map
pdb|2XFC|D Chain D, The Chikungunya E1 E2 Envelope Glycoprotein Complex Fit
Into The Semliki Forest Virus Cryo-Em Map
pdb|2XFC|F Chain F, The Chikungunya E1 E2 Envelope Glycoprotein Complex Fit
Into The Semliki Forest Virus Cryo-Em Map
pdb|2XFC|H Chain H, The Chikungunya E1 E2 Envelope Glycoprotein Complex Fit
Into The Semliki Forest Virus Cryo-Em Map
Length = 439
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%)
Query: 572 LDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYA 624
DAEN L ++ +EK KT A+R T S ++ VL +G + + +YA
Sbjct: 96 CDAENTQLSEAHVEKSESCKTEFASAYRAHTASASAKLRVLYQGNNITVTAYA 148
>pdb|3ZGX|A Chain A, Crystal Structure Of The Kleisin-n Smc Interface In
Prokaryotic Condensin
pdb|3ZGX|B Chain B, Crystal Structure Of The Kleisin-n Smc Interface In
Prokaryotic Condensin
Length = 426
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Query: 541 MLSGGQKQRIAIARAL----IKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTI 596
+LSGG++ AIA ++ +LDE +ALD N + ++K + I
Sbjct: 328 LLSGGERALTAIALLFSILKVRPVPFCVLDEVEAALDEANVFRFAQYLKKYSSDTQFIVI 387
Query: 597 AHRLSTIRKSN 607
HR T+ +++
Sbjct: 388 THRKGTMEEAD 398
>pdb|3H7F|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase From
Mycobacterium Tuberculosis
pdb|3H7F|B Chain B, Crystal Structure Of Serine Hydroxymethyltransferase From
Mycobacterium Tuberculosis
Length = 447
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 11/65 (16%)
Query: 488 FSGTIYENILYGVNDSSSVTKSDIIHAA----------KEANAYGFVIDFKNGFDTIVGE 537
FSG +YEN YGV+ ++ + D + A +AY V+DF F +I E
Sbjct: 153 FSGKLYENGFYGVDPATHLIDMDAVRATALEFRPKVIIAGWSAYPRVLDFA-AFRSIADE 211
Query: 538 RGIML 542
G L
Sbjct: 212 VGAKL 216
>pdb|3UIE|A Chain A, Crystal Structure Of Adenosine 5'-Phosphosulfate Kinase
From Arabidopsis Thaliana In Complex With Amppnp And Aps
pdb|3UIE|B Chain B, Crystal Structure Of Adenosine 5'-Phosphosulfate Kinase
From Arabidopsis Thaliana In Complex With Amppnp And Aps
pdb|3UIE|C Chain C, Crystal Structure Of Adenosine 5'-Phosphosulfate Kinase
From Arabidopsis Thaliana In Complex With Amppnp And Aps
pdb|4FXP|A Chain A, Crystal Structure Of Adenosine 5'-Phosphosulfate Kinase
From Arabidopsis Thaliana In Complex With Sulfate And
Aps
pdb|4FXP|B Chain B, Crystal Structure Of Adenosine 5'-Phosphosulfate Kinase
From Arabidopsis Thaliana In Complex With Sulfate And
Aps
pdb|4FXP|C Chain C, Crystal Structure Of Adenosine 5'-Phosphosulfate Kinase
From Arabidopsis Thaliana In Complex With Sulfate And
Aps
Length = 200
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 29/45 (64%), Gaps = 5/45 (11%)
Query: 426 QSGSMTSVIGSSGSGKSTLAMLLLR-LYDPQNGKI--LIDGVDIK 467
Q G + V G SGSGKSTLA L + LY Q GK+ ++DG +++
Sbjct: 23 QKGCVIWVTGLSGSGKSTLACALNQMLY--QKGKLCYILDGDNVR 65
>pdb|3QF7|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QF7|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 365
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 17/91 (18%)
Query: 523 FVIDF---KNGFDTIVGERGIM-----LSGGQKQRIAIARAL----IKKSKI--LLLDEA 568
F IDF K GF I+ + GI LSGG++ I+I+ A+ + ++ +DE
Sbjct: 255 FDIDFDDEKGGF--IIKDWGIERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEG 312
Query: 569 TSALDAENEYLVQSAIEKLIE-GKTVLTIAH 598
S+LD EN+ + S +++L K ++ I H
Sbjct: 313 FSSLDTENKEKIASVLKELERLNKVIVFITH 343
>pdb|1E69|A Chain A, Smc Head Domain From Thermotoga Maritima
pdb|1E69|B Chain B, Smc Head Domain From Thermotoga Maritima
pdb|1E69|C Chain C, Smc Head Domain From Thermotoga Maritima
pdb|1E69|D Chain D, Smc Head Domain From Thermotoga Maritima
pdb|1E69|E Chain E, Smc Head Domain From Thermotoga Maritima
pdb|1E69|F Chain F, Smc Head Domain From Thermotoga Maritima
Length = 322
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 16/98 (16%)
Query: 541 MLSGGQKQRIAIARAL----IKKSKILLLDEATSALDAENEYLVQSAIEK---------L 587
+LSGG+K + +A IK S +LDE S LD N + +++ +
Sbjct: 219 LLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVI 278
Query: 588 IEGKTVLTIA---HRLSTIRKSNQICVLDKGKIVEIGS 622
K V+ A H ++ + + I ++ KI+E+GS
Sbjct: 279 THNKIVMEAADLLHGVTMVNGVSAIVPVEVEKILEVGS 316
>pdb|3Q3V|A Chain A, Crystal Structure Of Phosphoglycerate Kinase From
Campylobacter Jejuni.
pdb|3Q3V|B Chain B, Crystal Structure Of Phosphoglycerate Kinase From
Campylobacter Jejuni
Length = 403
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 14/57 (24%)
Query: 364 LNKGLGACHRLWEIMEREPLISTSGGKFFSHSLKG-------EIDFNNIRFSYPSRP 413
+N G CHR +E + KFF KG EIDF + +P+RP
Sbjct: 146 INDAFGVCHRAHSSVE-------AITKFFDEKHKGAGFLLQKEIDFASNLIKHPARP 195
>pdb|3QG5|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QG5|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 365
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 17/91 (18%)
Query: 523 FVIDF---KNGFDTIVGERGIM-----LSGGQKQRIAI------ARALIKKSKILLLDEA 568
F IDF K GF I+ + GI LSGG++ I+I A + +DE
Sbjct: 255 FDIDFDDEKGGF--IIKDWGIERPARGLSGGERALISISLAXSLAEVASGRLDAFFIDEG 312
Query: 569 TSALDAENEYLVQSAIEKLIE-GKTVLTIAH 598
S+LD EN+ + S +++L K ++ I H
Sbjct: 313 FSSLDTENKEKIASVLKELERLNKVIVFITH 343
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,248,184
Number of Sequences: 62578
Number of extensions: 622266
Number of successful extensions: 2172
Number of sequences better than 100.0: 114
Number of HSP's better than 100.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1863
Number of HSP's gapped (non-prelim): 159
length of query: 644
length of database: 14,973,337
effective HSP length: 105
effective length of query: 539
effective length of database: 8,402,647
effective search space: 4529026733
effective search space used: 4529026733
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)