Query psy5743
Match_columns 644
No_of_seqs 266 out of 2391
Neff 8.3
Searched_HMMs 46136
Date Fri Aug 16 16:53:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5743.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5743hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0058|consensus 100.0 2E-125 4E-130 1020.3 67.2 574 64-643 133-706 (716)
2 COG2274 SunT ABC-type bacterio 100.0 2E-116 5E-121 988.3 73.0 607 25-641 97-708 (709)
3 KOG0055|consensus 100.0 1E-110 2E-115 953.5 70.1 577 63-643 649-1227(1228)
4 PRK11174 cysteine/glutathione 100.0 2E-104 5E-109 901.0 75.9 570 65-644 9-587 (588)
5 TIGR01193 bacteriocin_ABC ABC- 100.0 4E-104 9E-109 915.8 76.4 605 24-640 96-708 (708)
6 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 4E-104 8E-109 917.1 75.8 603 24-638 96-709 (710)
7 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 4E-103 9E-108 904.6 77.5 599 23-642 81-686 (686)
8 TIGR03375 type_I_sec_LssB type 100.0 2E-102 5E-107 899.7 75.1 594 26-629 86-689 (694)
9 TIGR00958 3a01208 Conjugate Tr 100.0 4E-101 8E-106 887.8 75.5 567 62-638 145-711 (711)
10 COG1132 MdlB ABC-type multidru 100.0 7E-101 2E-105 868.1 75.2 563 66-643 4-566 (567)
11 TIGR01846 type_I_sec_HlyB type 100.0 4E-100 1E-104 879.8 77.5 607 23-642 81-693 (694)
12 KOG0055|consensus 100.0 3E-101 7E-106 875.4 55.4 573 66-642 15-589 (1228)
13 PRK11176 lipid transporter ATP 100.0 1.5E-98 3E-103 853.0 77.0 570 65-643 12-581 (582)
14 COG4988 CydD ABC-type transpor 100.0 1.6E-98 4E-103 797.8 70.4 552 81-642 3-556 (559)
15 PTZ00265 multidrug resistance 100.0 8.4E-99 2E-103 913.6 76.7 569 65-641 812-1465(1466)
16 PRK11160 cysteine/glutathione 100.0 3.4E-98 7E-103 845.1 75.9 567 66-640 4-573 (574)
17 PRK10790 putative multidrug tr 100.0 1.1E-96 2E-101 838.6 76.8 567 64-642 9-576 (592)
18 TIGR02203 MsbA_lipidA lipid A 100.0 4.4E-96 1E-100 831.5 76.0 567 67-642 3-569 (571)
19 KOG0056|consensus 100.0 6E-100 1E-104 777.6 36.0 551 80-642 217-775 (790)
20 PRK13657 cyclic beta-1,2-gluca 100.0 7.1E-95 1.5E-99 822.5 77.6 566 65-642 6-571 (588)
21 TIGR02204 MsbA_rel ABC transpo 100.0 1.4E-94 3E-99 819.8 76.3 571 65-642 5-576 (576)
22 TIGR01192 chvA glucan exporter 100.0 4.3E-94 9.3E-99 812.8 77.7 565 65-641 6-570 (585)
23 TIGR02868 CydC thiol reductant 100.0 5E-95 1.1E-99 814.6 69.0 525 67-600 2-529 (529)
24 KOG0057|consensus 100.0 3.7E-95 8E-100 759.3 59.6 554 80-642 32-587 (591)
25 COG4987 CydC ABC-type transpor 100.0 1E-93 2.2E-98 748.2 65.0 559 74-640 12-572 (573)
26 PRK10789 putative multidrug tr 100.0 3.8E-93 8.2E-98 803.8 72.4 548 86-642 3-551 (569)
27 TIGR02857 CydD thiol reductant 100.0 8.8E-92 1.9E-96 788.3 70.7 528 76-612 1-529 (529)
28 TIGR00957 MRP_assoc_pro multi 100.0 1.1E-91 2.4E-96 860.3 73.6 563 66-640 952-1519(1522)
29 TIGR01842 type_I_sec_PrtD type 100.0 2E-90 4.4E-95 778.6 72.3 540 74-628 2-542 (544)
30 PLN03130 ABC transporter C fam 100.0 1.2E-90 2.7E-95 849.8 73.6 562 66-641 901-1474(1622)
31 PTZ00265 multidrug resistance 100.0 1.8E-89 3.9E-94 832.2 74.9 571 65-642 46-729 (1466)
32 COG5265 ATM1 ABC-type transpor 100.0 2.1E-92 4.6E-97 715.8 40.9 493 142-640 3-497 (497)
33 PTZ00243 ABC transporter; Prov 100.0 5E-89 1.1E-93 834.6 74.7 502 135-641 1012-1546(1560)
34 PLN03232 ABC transporter C fam 100.0 2.9E-89 6.2E-94 837.9 71.0 510 124-641 953-1471(1495)
35 COG4618 ArpD ABC-type protease 100.0 3.3E-88 7.1E-93 700.0 53.5 545 71-629 16-561 (580)
36 PLN03232 ABC transporter C fam 100.0 2.9E-86 6.4E-91 811.4 70.5 547 70-641 293-840 (1495)
37 PLN03130 ABC transporter C fam 100.0 5.3E-86 1.1E-90 808.9 72.1 546 70-641 293-840 (1622)
38 KOG0054|consensus 100.0 5.4E-86 1.2E-90 768.6 61.8 549 69-640 192-742 (1381)
39 KOG0054|consensus 100.0 8.3E-86 1.8E-90 767.0 60.7 512 123-640 860-1374(1381)
40 TIGR01271 CFTR_protein cystic 100.0 9.5E-85 2E-89 796.8 72.6 500 132-641 936-1452(1490)
41 TIGR01194 cyc_pep_trnsptr cycl 100.0 3.1E-84 6.7E-89 728.6 67.6 533 65-620 4-551 (555)
42 PRK10522 multidrug transporter 100.0 2E-78 4.2E-83 681.4 67.4 528 69-627 4-538 (547)
43 TIGR00957 MRP_assoc_pro multi 100.0 1.2E-77 2.6E-82 736.5 73.3 548 70-641 309-862 (1522)
44 TIGR01271 CFTR_protein cystic 100.0 2.9E-74 6.2E-79 704.5 73.2 541 70-638 72-645 (1490)
45 TIGR00954 3a01203 Peroxysomal 100.0 7.1E-74 1.5E-78 653.4 63.4 533 64-614 77-653 (659)
46 PTZ00243 ABC transporter; Prov 100.0 2.3E-72 5.1E-77 687.9 71.5 552 65-640 231-880 (1560)
47 cd03289 ABCC_CFTR2 The CFTR su 100.0 4E-57 8.7E-62 461.7 26.7 237 398-641 1-237 (275)
48 PRK14257 phosphate ABC transpo 100.0 2.1E-54 4.6E-59 452.8 27.3 249 371-630 54-315 (329)
49 COG1126 GlnQ ABC-type polar am 100.0 3.4E-53 7.3E-58 397.5 23.1 220 400-633 3-230 (240)
50 cd03252 ABCC_Hemolysin The ABC 100.0 7.2E-52 1.6E-56 417.3 26.8 236 400-640 1-236 (237)
51 COG4178 ABC-type uncharacteriz 100.0 2.7E-48 5.9E-53 420.8 55.0 503 88-614 57-588 (604)
52 cd03288 ABCC_SUR2 The SUR doma 100.0 2.8E-51 6E-56 417.5 27.6 241 396-641 16-256 (257)
53 COG4615 PvdE ABC-type sideroph 100.0 1.3E-47 2.8E-52 385.4 48.4 521 69-621 4-530 (546)
54 COG1117 PstB ABC-type phosphat 100.0 1.9E-51 4.1E-56 383.7 19.2 223 398-630 6-239 (253)
55 COG1135 AbcC ABC-type metal io 100.0 7.1E-51 1.5E-55 400.9 22.7 221 400-632 2-235 (339)
56 cd03253 ABCC_ATM1_transporter 100.0 3E-50 6.6E-55 405.3 26.6 236 400-641 1-236 (236)
57 COG1125 OpuBA ABC-type proline 100.0 9.3E-51 2E-55 388.2 20.3 221 400-635 2-232 (309)
58 cd03254 ABCC_Glucan_exporter_l 100.0 5.7E-50 1.2E-54 401.4 25.8 226 399-629 2-227 (229)
59 cd03251 ABCC_MsbA MsbA is an e 100.0 4.9E-50 1.1E-54 403.2 25.4 233 400-637 1-233 (234)
60 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 8.5E-50 1.8E-54 402.5 26.3 237 400-640 1-237 (238)
61 cd03244 ABCC_MRP_domain2 Domai 100.0 7.8E-50 1.7E-54 398.2 25.5 220 398-622 1-220 (221)
62 TIGR02314 ABC_MetN D-methionin 100.0 3.1E-49 6.7E-54 414.4 24.4 228 400-639 2-242 (343)
63 COG1120 FepC ABC-type cobalami 100.0 3.4E-49 7.5E-54 390.0 21.6 216 399-628 2-228 (258)
64 cd03245 ABCC_bacteriocin_expor 100.0 1.2E-48 2.6E-53 389.4 25.6 219 399-621 2-220 (220)
65 PRK13631 cbiO cobalt transport 100.0 1.1E-48 2.4E-53 408.5 25.6 222 399-628 21-265 (320)
66 COG1122 CbiO ABC-type cobalt t 100.0 1.8E-48 3.8E-53 385.2 22.2 217 399-629 3-229 (235)
67 COG1127 Ttg2A ABC-type transpo 100.0 3.1E-48 6.7E-53 369.7 22.8 228 398-639 7-246 (263)
68 COG3839 MalK ABC-type sugar tr 100.0 1.3E-48 2.8E-53 400.3 21.7 220 399-634 3-229 (338)
69 cd03261 ABC_Org_Solvent_Resist 100.0 3.5E-48 7.6E-53 389.9 24.2 221 400-635 1-232 (235)
70 cd03248 ABCC_TAP TAP, the Tran 100.0 6E-48 1.3E-52 385.9 24.2 219 396-617 8-226 (226)
71 COG1136 SalX ABC-type antimicr 100.0 8.6E-48 1.9E-52 372.8 23.3 209 400-619 2-222 (226)
72 cd03260 ABC_PstB_phosphate_tra 100.0 5.9E-48 1.3E-52 386.2 22.9 215 400-626 1-227 (227)
73 PRK14269 phosphate ABC transpo 100.0 1.8E-47 3.8E-52 387.3 25.4 221 399-629 2-231 (246)
74 PRK13650 cbiO cobalt transport 100.0 2E-47 4.4E-52 393.3 25.1 219 399-629 4-230 (279)
75 COG1116 TauB ABC-type nitrate/ 100.0 1.1E-47 2.4E-52 371.7 21.3 198 399-615 3-207 (248)
76 cd03369 ABCC_NFT1 Domain 2 of 100.0 3.7E-47 8.1E-52 374.9 25.5 204 397-623 4-207 (207)
77 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 2.8E-47 6.1E-52 374.3 23.5 220 399-638 4-235 (254)
78 cd03291 ABCC_CFTR1 The CFTR su 100.0 1.8E-46 3.9E-51 384.7 29.3 241 372-638 15-256 (282)
79 PRK11153 metN DL-methionine tr 100.0 4.5E-47 9.8E-52 400.8 25.3 223 400-634 2-236 (343)
80 PRK11650 ugpC glycerol-3-phosp 100.0 4E-47 8.6E-52 401.8 24.5 220 399-634 3-230 (356)
81 PRK14250 phosphate ABC transpo 100.0 9.8E-47 2.1E-51 380.5 26.2 225 399-637 3-230 (241)
82 COG3840 ThiQ ABC-type thiamine 100.0 3.5E-47 7.5E-52 345.9 20.1 212 400-629 2-220 (231)
83 TIGR00972 3a0107s01c2 phosphat 100.0 6.1E-47 1.3E-51 383.6 24.3 224 400-633 2-237 (247)
84 COG3842 PotA ABC-type spermidi 100.0 1.7E-47 3.7E-52 394.1 20.4 220 399-634 5-232 (352)
85 PRK14273 phosphate ABC transpo 100.0 1.1E-46 2.4E-51 383.4 26.1 226 399-634 7-244 (254)
86 PRK14242 phosphate transporter 100.0 8.4E-47 1.8E-51 384.1 24.9 221 399-629 6-238 (253)
87 COG1124 DppF ABC-type dipeptid 100.0 5.1E-47 1.1E-51 363.3 21.6 229 399-638 3-241 (252)
88 cd03219 ABC_Mj1267_LivG_branch 100.0 4.9E-47 1.1E-51 381.9 22.4 220 400-629 1-233 (236)
89 TIGR01186 proV glycine betaine 100.0 5.5E-47 1.2E-51 399.5 23.5 210 414-635 5-226 (363)
90 PRK10744 pstB phosphate transp 100.0 2E-46 4.3E-51 382.6 26.8 223 397-629 11-245 (260)
91 PRK11432 fbpC ferric transport 100.0 6.3E-47 1.4E-51 399.1 23.7 219 399-634 6-232 (351)
92 TIGR00960 3a0501s02 Type II (G 100.0 4E-47 8.6E-52 377.3 20.3 206 400-617 2-216 (216)
93 cd03296 ABC_CysA_sulfate_impor 100.0 1.1E-46 2.3E-51 380.0 23.3 214 400-629 3-227 (239)
94 PRK13647 cbiO cobalt transport 100.0 8.2E-47 1.8E-51 387.7 22.8 214 399-626 4-225 (274)
95 cd03256 ABC_PhnC_transporter A 100.0 1E-46 2.2E-51 380.9 23.0 215 400-627 1-233 (241)
96 cd03250 ABCC_MRP_domain1 Domai 100.0 1.3E-46 2.9E-51 370.1 23.2 200 400-616 1-204 (204)
97 PRK13637 cbiO cobalt transport 100.0 3E-46 6.4E-51 386.0 26.6 219 400-628 3-234 (287)
98 cd03263 ABC_subfamily_A The AB 100.0 1E-46 2.2E-51 375.5 22.2 213 400-626 1-219 (220)
99 PRK13635 cbiO cobalt transport 100.0 1.5E-46 3.2E-51 386.7 23.9 218 399-629 5-230 (279)
100 PRK14267 phosphate ABC transpo 100.0 2.2E-46 4.7E-51 381.1 24.4 228 399-636 4-245 (253)
101 PRK13643 cbiO cobalt transport 100.0 2.7E-46 5.9E-51 386.5 25.3 218 400-628 2-233 (288)
102 cd03224 ABC_TM1139_LivF_branch 100.0 1.9E-46 4.1E-51 374.1 23.2 216 400-628 1-221 (222)
103 TIGR03265 PhnT2 putative 2-ami 100.0 2E-46 4.3E-51 396.0 24.5 219 399-634 4-230 (353)
104 TIGR02315 ABC_phnC phosphonate 100.0 1.8E-46 3.9E-51 379.5 23.0 215 400-627 2-234 (243)
105 PRK14235 phosphate transporter 100.0 3.4E-46 7.4E-51 382.1 25.1 223 397-629 17-252 (267)
106 cd03295 ABC_OpuCA_Osmoprotecti 100.0 2.3E-46 4.9E-51 378.3 23.4 218 400-629 1-226 (242)
107 PRK13642 cbiO cobalt transport 100.0 3.5E-46 7.5E-51 383.9 25.0 219 399-629 4-230 (277)
108 cd03294 ABC_Pro_Gly_Bertaine T 100.0 1.4E-46 3.1E-51 385.1 21.9 222 401-636 26-258 (269)
109 cd03258 ABC_MetN_methionine_tr 100.0 1.8E-46 3.9E-51 377.0 21.8 218 400-629 2-231 (233)
110 PRK14247 phosphate ABC transpo 100.0 4.2E-46 9.1E-51 378.3 24.6 227 399-635 3-241 (250)
111 PRK13646 cbiO cobalt transport 100.0 5E-46 1.1E-50 384.3 25.6 222 400-629 3-236 (286)
112 PRK14274 phosphate ABC transpo 100.0 6.7E-46 1.4E-50 378.6 26.1 226 399-634 12-249 (259)
113 PRK10851 sulfate/thiosulfate t 100.0 3.2E-46 7E-51 394.4 24.3 219 400-634 3-232 (353)
114 cd03226 ABC_cobalt_CbiO_domain 100.0 2E-46 4.4E-51 369.1 21.2 201 401-618 1-205 (205)
115 COG3638 ABC-type phosphate/pho 100.0 1.4E-46 3E-51 357.4 18.9 226 399-640 3-246 (258)
116 PRK13634 cbiO cobalt transport 100.0 3.7E-46 8E-51 385.8 23.7 219 400-629 3-236 (290)
117 cd03259 ABC_Carb_Solutes_like 100.0 1.3E-46 2.9E-51 372.7 19.5 205 400-621 1-213 (213)
118 PRK13632 cbiO cobalt transport 100.0 4.9E-46 1.1E-50 381.7 24.3 218 399-629 7-232 (271)
119 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 3.9E-46 8.4E-51 375.2 22.9 218 400-629 2-222 (236)
120 PRK09452 potA putrescine/sperm 100.0 6.5E-46 1.4E-50 394.0 25.6 219 399-634 14-240 (375)
121 PRK14251 phosphate ABC transpo 100.0 5.6E-46 1.2E-50 377.6 24.0 227 399-635 4-242 (251)
122 TIGR03258 PhnT 2-aminoethylpho 100.0 5.2E-46 1.1E-50 393.3 24.5 220 398-634 4-234 (362)
123 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 2.8E-46 6E-51 371.8 21.0 206 400-617 1-218 (218)
124 PRK11629 lolD lipoprotein tran 100.0 6.3E-46 1.4E-50 372.9 23.6 213 399-622 5-228 (233)
125 PRK14237 phosphate transporter 100.0 1.1E-45 2.3E-50 378.5 25.6 222 398-629 19-252 (267)
126 PRK14268 phosphate ABC transpo 100.0 8.9E-46 1.9E-50 377.4 24.8 224 399-633 12-247 (258)
127 PRK09536 btuD corrinoid ABC tr 100.0 7.6E-46 1.6E-50 395.5 25.3 224 399-638 3-236 (402)
128 PRK14244 phosphate ABC transpo 100.0 4.4E-46 9.5E-51 378.3 22.3 225 400-634 6-243 (251)
129 PRK14245 phosphate ABC transpo 100.0 8.9E-46 1.9E-50 375.8 24.4 222 399-630 3-236 (250)
130 PRK11000 maltose/maltodextrin 100.0 6.7E-46 1.4E-50 395.0 24.6 219 399-634 3-229 (369)
131 PRK15079 oligopeptide ABC tran 100.0 7.5E-46 1.6E-50 388.6 24.5 228 399-636 8-259 (331)
132 PRK14240 phosphate transporter 100.0 1.1E-45 2.4E-50 375.3 25.0 226 398-633 2-239 (250)
133 PRK11831 putative ABC transpor 100.0 9.1E-46 2E-50 379.4 24.6 227 399-639 7-244 (269)
134 PRK14239 phosphate transporter 100.0 1.2E-45 2.5E-50 375.6 24.9 222 399-630 5-238 (252)
135 TIGR03005 ectoine_ehuA ectoine 100.0 8.5E-46 1.8E-50 376.4 23.8 217 400-630 1-238 (252)
136 PRK14236 phosphate transporter 100.0 1.3E-45 2.9E-50 378.7 25.5 222 398-629 24-257 (272)
137 PRK13636 cbiO cobalt transport 100.0 1.3E-45 2.9E-50 380.5 25.5 217 399-629 5-232 (283)
138 TIGR03410 urea_trans_UrtE urea 100.0 8.8E-46 1.9E-50 371.3 23.1 213 400-626 1-219 (230)
139 cd03264 ABC_drug_resistance_li 100.0 6.4E-46 1.4E-50 367.3 21.8 205 400-621 1-211 (211)
140 PRK13640 cbiO cobalt transport 100.0 1.2E-45 2.6E-50 380.7 24.6 217 399-628 5-232 (282)
141 cd03290 ABCC_SUR1_N The SUR do 100.0 1.2E-45 2.6E-50 367.2 23.5 211 400-616 1-218 (218)
142 cd03268 ABC_BcrA_bacitracin_re 100.0 8.8E-46 1.9E-50 365.5 22.2 205 400-621 1-208 (208)
143 PRK14261 phosphate ABC transpo 100.0 1.7E-45 3.6E-50 374.5 24.8 232 399-640 6-249 (253)
144 PRK13633 cobalt transporter AT 100.0 1.1E-45 2.3E-50 380.9 23.5 219 399-629 4-234 (280)
145 cd03218 ABC_YhbG The ABC trans 100.0 6.5E-46 1.4E-50 372.8 21.3 218 400-628 1-222 (232)
146 PRK11264 putative amino-acid A 100.0 2.7E-45 5.8E-50 372.5 26.0 226 400-639 4-245 (250)
147 TIGR02211 LolD_lipo_ex lipopro 100.0 8.5E-46 1.8E-50 369.1 22.0 207 400-618 2-220 (221)
148 PRK13652 cbiO cobalt transport 100.0 1.3E-45 2.9E-50 379.6 23.9 216 400-629 4-228 (277)
149 PRK14248 phosphate ABC transpo 100.0 2.7E-45 5.8E-50 376.0 26.1 221 399-629 21-253 (268)
150 cd03266 ABC_NatA_sodium_export 100.0 5.9E-46 1.3E-50 369.5 20.4 209 400-621 2-218 (218)
151 PRK14238 phosphate transporter 100.0 3E-45 6.6E-50 375.7 26.3 221 399-630 24-257 (271)
152 PRK14262 phosphate ABC transpo 100.0 2.4E-45 5.1E-50 372.8 25.2 230 399-638 3-244 (250)
153 PRK10619 histidine/lysine/argi 100.0 2E-45 4.4E-50 374.6 24.8 219 398-629 4-242 (257)
154 PRK13644 cbiO cobalt transport 100.0 1.5E-45 3.3E-50 378.4 23.9 216 400-629 2-225 (274)
155 PRK14259 phosphate ABC transpo 100.0 2.6E-45 5.6E-50 375.8 25.5 223 398-630 12-255 (269)
156 PRK13648 cbiO cobalt transport 100.0 1.7E-45 3.6E-50 377.5 23.9 218 399-629 7-232 (269)
157 PRK14271 phosphate ABC transpo 100.0 2.7E-45 5.8E-50 376.7 25.4 221 399-629 21-252 (276)
158 TIGR02769 nickel_nikE nickel i 100.0 3.1E-45 6.7E-50 374.8 25.7 228 400-637 3-249 (265)
159 PRK11124 artP arginine transpo 100.0 1.7E-45 3.7E-50 372.0 23.5 216 400-629 3-231 (242)
160 cd03293 ABC_NrtD_SsuB_transpor 100.0 6.8E-46 1.5E-50 369.5 20.3 209 400-624 1-219 (220)
161 cd03247 ABCC_cytochrome_bd The 100.0 1.2E-45 2.6E-50 355.2 21.1 178 400-621 1-178 (178)
162 PRK13651 cobalt transporter AT 100.0 2.7E-45 5.8E-50 380.8 25.4 219 400-629 3-255 (305)
163 PRK14256 phosphate ABC transpo 100.0 3.9E-45 8.5E-50 371.5 26.0 223 398-630 3-238 (252)
164 cd03265 ABC_DrrA DrrA is the A 100.0 1.5E-45 3.3E-50 367.0 22.3 212 400-626 1-219 (220)
165 PRK14249 phosphate ABC transpo 100.0 3.7E-45 8E-50 371.5 25.6 221 399-629 4-236 (251)
166 PRK11022 dppD dipeptide transp 100.0 2.5E-45 5.4E-50 384.5 25.0 230 400-637 4-252 (326)
167 COG2884 FtsE Predicted ATPase 100.0 6.4E-46 1.4E-50 340.6 17.6 210 400-622 2-220 (223)
168 PRK10575 iron-hydroxamate tran 100.0 1.7E-45 3.6E-50 376.8 22.6 224 399-638 11-245 (265)
169 PRK13649 cbiO cobalt transport 100.0 3.9E-45 8.5E-50 377.2 25.4 219 400-629 3-235 (280)
170 TIGR03411 urea_trans_UrtD urea 100.0 3.4E-45 7.4E-50 369.9 24.5 215 400-628 3-231 (242)
171 PRK09493 glnQ glutamine ABC tr 100.0 4.5E-45 9.8E-50 368.5 25.3 216 400-629 2-226 (240)
172 PRK14253 phosphate ABC transpo 100.0 3.6E-45 7.7E-50 371.3 24.7 221 399-629 3-234 (249)
173 cd03225 ABC_cobalt_CbiO_domain 100.0 9.7E-46 2.1E-50 366.0 19.9 203 401-616 1-211 (211)
174 PRK11607 potG putrescine trans 100.0 2.2E-45 4.8E-50 390.6 24.1 219 399-634 19-245 (377)
175 cd03301 ABC_MalK_N The N-termi 100.0 1.2E-45 2.5E-50 366.0 20.6 205 400-621 1-213 (213)
176 TIGR02673 FtsE cell division A 100.0 1.2E-45 2.7E-50 366.1 20.6 204 400-616 2-214 (214)
177 PRK11231 fecE iron-dicitrate t 100.0 2.5E-45 5.5E-50 373.5 23.2 224 400-639 3-236 (255)
178 PRK10070 glycine betaine trans 100.0 2.7E-45 5.9E-50 391.0 24.4 208 416-634 42-260 (400)
179 PRK14254 phosphate ABC transpo 100.0 7.2E-45 1.6E-49 375.1 26.6 222 398-629 38-270 (285)
180 cd03257 ABC_NikE_OppD_transpor 100.0 3.3E-45 7.1E-50 366.7 23.4 215 400-621 2-228 (228)
181 PRK14275 phosphate ABC transpo 100.0 6.2E-45 1.3E-49 375.9 25.9 228 399-636 39-278 (286)
182 PRK14270 phosphate ABC transpo 100.0 4.6E-45 9.9E-50 370.8 24.5 221 399-629 4-236 (251)
183 PRK14272 phosphate ABC transpo 100.0 7E-45 1.5E-49 369.9 25.9 225 400-634 5-242 (252)
184 cd03292 ABC_FtsE_transporter F 100.0 1.8E-45 4E-50 364.9 21.0 204 400-617 1-214 (214)
185 PRK09473 oppD oligopeptide tra 100.0 4.3E-45 9.3E-50 383.1 24.9 231 399-637 12-260 (330)
186 PRK14243 phosphate transporter 100.0 6.4E-45 1.4E-49 372.0 25.2 222 399-630 10-250 (264)
187 PRK11308 dppF dipeptide transp 100.0 5E-45 1.1E-49 382.1 24.9 229 399-637 5-253 (327)
188 PRK14260 phosphate ABC transpo 100.0 5.7E-45 1.2E-49 371.6 24.6 222 399-630 7-245 (259)
189 PRK10247 putative ABC transpor 100.0 2.6E-45 5.7E-50 366.2 21.7 213 399-624 7-223 (225)
190 PRK14252 phosphate ABC transpo 100.0 7.3E-45 1.6E-49 372.1 25.4 223 397-629 14-250 (265)
191 PRK11614 livF leucine/isoleuci 100.0 5.8E-45 1.3E-49 366.9 24.2 218 399-628 5-226 (237)
192 PRK13645 cbiO cobalt transport 100.0 6E-45 1.3E-49 377.2 24.7 221 398-629 5-241 (289)
193 PRK11247 ssuB aliphatic sulfon 100.0 5.5E-45 1.2E-49 369.8 23.9 205 399-625 12-220 (257)
194 cd03300 ABC_PotA_N PotA is an 100.0 4E-45 8.7E-50 366.8 22.0 214 400-629 1-221 (232)
195 cd03298 ABC_ThiQ_thiamine_tran 100.0 5.2E-45 1.1E-49 360.8 22.4 204 400-621 1-211 (211)
196 PRK13638 cbiO cobalt transport 100.0 5.2E-45 1.1E-49 374.3 23.1 215 400-629 2-226 (271)
197 PRK10584 putative ABC transpor 100.0 6.9E-45 1.5E-49 364.3 23.2 211 399-620 6-227 (228)
198 PRK10895 lipopolysaccharide AB 100.0 9E-45 2E-49 366.5 24.3 220 400-629 4-227 (241)
199 PRK13537 nodulation ABC transp 100.0 6.5E-45 1.4E-49 378.7 23.7 215 399-629 7-228 (306)
200 TIGR00968 3a0106s01 sulfate AB 100.0 7.3E-45 1.6E-49 365.9 23.3 213 400-629 1-221 (237)
201 PRK13548 hmuV hemin importer A 100.0 1E-44 2.3E-49 369.2 24.6 215 400-628 3-230 (258)
202 PRK14246 phosphate ABC transpo 100.0 1.5E-44 3.2E-49 367.5 25.6 229 399-637 10-250 (257)
203 PRK14266 phosphate ABC transpo 100.0 1.9E-44 4.1E-49 366.2 26.3 225 400-634 4-240 (250)
204 PRK14263 phosphate ABC transpo 100.0 1.4E-44 3E-49 368.6 25.3 227 399-635 8-252 (261)
205 PRK13639 cbiO cobalt transport 100.0 6.6E-45 1.4E-49 374.0 22.9 216 400-629 2-227 (275)
206 PRK14241 phosphate transporter 100.0 1E-44 2.2E-49 369.7 24.1 221 399-629 4-243 (258)
207 TIGR03415 ABC_choXWV_ATP choli 100.0 6.1E-45 1.3E-49 385.6 23.2 209 415-635 37-261 (382)
208 cd03246 ABCC_Protease_Secretio 100.0 6.6E-45 1.4E-49 348.3 21.2 172 400-617 1-173 (173)
209 cd03235 ABC_Metallic_Cations A 100.0 2.8E-45 6E-50 363.3 19.3 201 401-621 1-213 (213)
210 TIGR03873 F420-0_ABC_ATP propo 100.0 9E-45 2E-49 369.7 23.1 215 400-628 2-226 (256)
211 PRK10771 thiQ thiamine transpo 100.0 1.4E-44 3E-49 363.0 23.9 212 400-629 2-220 (232)
212 PRK10908 cell division protein 100.0 9.4E-45 2E-49 361.8 22.5 205 400-618 2-216 (222)
213 PRK10253 iron-enterobactin tra 100.0 1.2E-44 2.5E-49 370.5 23.3 217 398-628 6-233 (265)
214 COG1118 CysA ABC-type sulfate/ 100.0 4.2E-45 9.2E-50 359.0 19.1 220 399-634 2-233 (345)
215 PRK15112 antimicrobial peptide 100.0 2E-44 4.3E-49 369.0 24.8 232 399-640 4-252 (267)
216 PRK11300 livG leucine/isoleuci 100.0 1.3E-44 2.8E-49 368.5 23.3 223 399-629 5-244 (255)
217 PRK14255 phosphate ABC transpo 100.0 1.8E-44 4E-49 366.7 24.3 224 399-632 5-240 (252)
218 PRK11701 phnK phosphonate C-P 100.0 2.6E-44 5.6E-49 366.7 25.1 228 399-636 6-249 (258)
219 PRK13641 cbiO cobalt transport 100.0 2.7E-44 5.8E-49 371.6 25.5 218 399-628 2-234 (287)
220 TIGR01288 nodI ATP-binding ABC 100.0 1.9E-44 4E-49 375.7 24.2 215 399-629 4-225 (303)
221 cd03269 ABC_putative_ATPase Th 100.0 5.3E-45 1.1E-49 360.4 18.9 203 400-621 1-210 (210)
222 cd03299 ABC_ModC_like Archeal 100.0 2.5E-44 5.5E-49 361.6 23.7 213 400-629 1-220 (235)
223 PRK14264 phosphate ABC transpo 100.0 3.8E-44 8.2E-49 373.2 25.7 221 399-629 45-290 (305)
224 PRK14258 phosphate ABC transpo 100.0 3.2E-44 6.9E-49 366.4 24.6 222 399-630 7-247 (261)
225 cd03262 ABC_HisP_GlnQ_permease 100.0 1.9E-44 4E-49 357.4 22.2 204 400-617 1-213 (213)
226 PRK15093 antimicrobial peptide 100.0 4.3E-44 9.3E-49 376.4 26.1 230 400-637 4-257 (330)
227 PRK11144 modC molybdate transp 100.0 2.5E-44 5.5E-49 381.2 24.1 212 400-631 2-221 (352)
228 TIGR01277 thiQ thiamine ABC tr 100.0 3E-44 6.5E-49 355.8 22.7 205 400-622 1-212 (213)
229 TIGR01978 sufC FeS assembly AT 100.0 2.3E-44 5E-49 364.1 22.2 216 400-627 1-233 (243)
230 PRK14265 phosphate ABC transpo 100.0 7.3E-44 1.6E-48 365.9 25.8 221 399-629 20-259 (274)
231 TIGR03522 GldA_ABC_ATP gliding 100.0 2.1E-44 4.5E-49 374.7 21.9 214 400-629 3-222 (301)
232 PRK13547 hmuV hemin importer A 100.0 5.6E-44 1.2E-48 365.4 24.2 215 400-628 2-244 (272)
233 PRK10419 nikE nickel transport 100.0 5.1E-44 1.1E-48 366.1 23.2 231 400-638 4-250 (268)
234 PRK10418 nikD nickel transport 100.0 1.2E-43 2.5E-48 360.9 25.1 229 399-641 4-244 (254)
235 cd03234 ABCG_White The White s 100.0 3.1E-44 6.7E-49 359.0 20.3 213 400-621 4-226 (226)
236 PRK09984 phosphonate/organopho 100.0 9.8E-44 2.1E-48 363.3 24.4 224 399-639 4-250 (262)
237 TIGR02982 heterocyst_DevA ABC 100.0 5.6E-44 1.2E-48 355.6 22.0 207 400-617 2-219 (220)
238 PRK13536 nodulation factor exp 100.0 6.8E-44 1.5E-48 374.8 23.7 214 399-628 41-261 (340)
239 TIGR02142 modC_ABC molybdenum 100.0 1.1E-43 2.3E-48 377.0 23.3 215 404-634 4-227 (354)
240 TIGR01188 drrA daunorubicin re 100.0 8.2E-44 1.8E-48 370.7 20.8 201 415-628 6-213 (302)
241 KOG0060|consensus 100.0 7.1E-41 1.5E-45 352.2 42.2 475 127-614 128-641 (659)
242 TIGR02323 CP_lyasePhnK phospho 100.0 4.1E-43 8.8E-48 357.0 24.4 228 399-636 3-246 (253)
243 cd03233 ABC_PDR_domain1 The pl 100.0 2.5E-43 5.3E-48 345.9 21.6 191 399-621 3-202 (202)
244 PRK11248 tauB taurine transpor 100.0 1.8E-43 3.8E-48 359.2 21.2 204 400-623 2-215 (255)
245 cd03230 ABC_DR_subfamily_A Thi 100.0 2.4E-43 5.3E-48 337.5 20.8 170 400-617 1-173 (173)
246 cd03229 ABC_Class3 This class 100.0 2.4E-43 5.2E-48 339.1 20.5 172 400-616 1-178 (178)
247 TIGR03740 galliderm_ABC gallid 100.0 2.9E-43 6.4E-48 351.2 21.8 207 400-625 1-210 (223)
248 cd03228 ABCC_MRP_Like The MRP 100.0 3.3E-43 7.2E-48 335.9 21.2 171 400-616 1-171 (171)
249 cd03232 ABC_PDR_domain2 The pl 100.0 4.5E-43 9.7E-48 341.3 20.0 182 399-621 3-192 (192)
250 cd03223 ABCD_peroxisomal_ALDP 100.0 8.2E-43 1.8E-47 331.2 21.0 164 400-616 1-164 (166)
251 PRK09580 sufC cysteine desulfu 100.0 3.9E-43 8.4E-48 356.3 19.8 218 400-627 2-234 (248)
252 cd03213 ABCG_EPDR ABCG transpo 100.0 8.5E-43 1.8E-47 339.8 20.8 183 399-621 3-194 (194)
253 cd03215 ABC_Carb_Monos_II This 100.0 7.9E-43 1.7E-47 336.7 19.9 172 399-617 4-182 (182)
254 cd03297 ABC_ModC_molybdenum_tr 100.0 1E-42 2.2E-47 345.1 21.0 203 401-621 3-214 (214)
255 CHL00131 ycf16 sulfate ABC tra 100.0 2E-42 4.4E-47 351.7 23.6 215 399-626 7-239 (252)
256 COG1131 CcmA ABC-type multidru 100.0 1.5E-42 3.2E-47 357.6 22.4 216 399-628 4-226 (293)
257 PRK15056 manganese/iron transp 100.0 1.5E-42 3.3E-47 356.1 22.2 212 399-628 6-230 (272)
258 PRK09544 znuC high-affinity zi 100.0 3.7E-42 8.1E-47 348.3 24.0 208 399-638 4-217 (251)
259 cd03217 ABC_FeS_Assembly ABC-t 100.0 2.6E-42 5.7E-47 338.2 22.0 186 400-627 1-192 (200)
260 TIGR02770 nickel_nikD nickel i 100.0 2.4E-42 5.2E-47 346.1 21.4 210 417-636 1-223 (230)
261 COG4619 ABC-type uncharacteriz 100.0 6.4E-43 1.4E-47 313.7 15.0 195 413-617 14-212 (223)
262 PRK03695 vitamin B12-transport 100.0 6.8E-42 1.5E-46 346.5 23.3 218 401-639 2-231 (248)
263 TIGR03608 L_ocin_972_ABC putat 100.0 3.2E-42 7E-47 339.6 20.0 197 402-612 1-206 (206)
264 cd03214 ABC_Iron-Siderophores_ 100.0 2.9E-42 6.3E-47 332.2 18.5 177 401-621 1-180 (180)
265 PRK10261 glutathione transport 100.0 7.6E-42 1.6E-46 388.6 24.9 228 399-636 313-561 (623)
266 COG1123 ATPase components of v 100.0 8.6E-42 1.9E-46 365.9 23.5 231 399-639 280-530 (539)
267 PRK15439 autoinducer 2 ABC tra 100.0 8.4E-42 1.8E-46 380.7 24.5 215 399-628 11-229 (510)
268 TIGR01184 ntrCD nitrate transp 100.0 6.4E-42 1.4E-46 342.9 20.5 194 418-627 1-203 (230)
269 cd03216 ABC_Carb_Monos_I This 100.0 1.6E-41 3.4E-46 321.4 21.2 159 400-619 1-162 (163)
270 PRK13540 cytochrome c biogenes 100.0 1.5E-41 3.2E-46 333.0 20.7 195 400-611 2-198 (200)
271 COG4175 ProV ABC-type proline/ 100.0 8.6E-42 1.9E-46 335.7 18.8 225 399-634 4-260 (386)
272 cd03231 ABC_CcmA_heme_exporter 100.0 2.1E-41 4.5E-46 332.2 21.5 195 400-612 1-198 (201)
273 COG0410 LivF ABC-type branched 100.0 2.6E-41 5.6E-46 322.0 21.1 219 400-629 4-227 (237)
274 PRK13538 cytochrome c biogenes 100.0 1.9E-41 4E-46 333.4 20.6 198 400-612 2-202 (204)
275 COG0444 DppD ABC-type dipeptid 100.0 3.5E-41 7.5E-46 337.5 22.2 231 400-638 2-253 (316)
276 PRK09700 D-allose transporter 100.0 1.9E-41 4.1E-46 378.5 22.7 215 399-627 5-233 (510)
277 PRK13549 xylose transporter AT 100.0 4.1E-41 8.9E-46 375.3 25.2 215 399-627 5-231 (506)
278 cd03267 ABC_NatA_like Similar 100.0 2.6E-41 5.7E-46 339.7 21.1 194 415-621 34-236 (236)
279 COG4555 NatA ABC-type Na+ tran 100.0 1.1E-41 2.3E-46 315.3 15.7 218 400-628 2-222 (245)
280 PRK10762 D-ribose transporter 100.0 6.5E-41 1.4E-45 373.2 24.4 214 400-627 5-229 (501)
281 PRK15134 microcin C ABC transp 100.0 3.5E-41 7.5E-46 377.9 22.1 221 399-630 275-517 (529)
282 COG1123 ATPase components of v 100.0 6E-41 1.3E-45 359.4 22.7 231 399-638 5-254 (539)
283 TIGR01189 ccmA heme ABC export 100.0 5.1E-41 1.1E-45 328.8 19.3 194 400-610 1-196 (198)
284 PLN03211 ABC transporter G-25; 100.0 8.5E-41 1.8E-45 379.5 24.0 203 414-627 80-295 (659)
285 TIGR00955 3a01204 The Eye Pigm 100.0 1.5E-41 3.3E-46 385.7 17.9 220 399-627 17-255 (617)
286 PRK13543 cytochrome c biogenes 100.0 9.2E-41 2E-45 330.8 21.2 199 399-614 11-212 (214)
287 PRK10938 putative molybdenum t 100.0 8E-41 1.7E-45 371.9 22.9 210 400-628 4-224 (490)
288 PRK13539 cytochrome c biogenes 100.0 9E-41 2E-45 329.2 20.6 196 400-614 3-200 (207)
289 PRK10982 galactose/methyl gala 100.0 6.8E-41 1.5E-45 372.3 21.8 216 402-627 1-222 (491)
290 PRK11288 araG L-arabinose tran 100.0 9.3E-41 2E-45 372.0 22.9 211 399-623 4-224 (501)
291 PRK15134 microcin C ABC transp 100.0 2.1E-40 4.6E-45 371.5 25.5 223 399-629 5-247 (529)
292 PRK10261 glutathione transport 100.0 1.3E-40 2.9E-45 378.5 24.2 228 399-634 12-264 (623)
293 COG4608 AppF ABC-type oligopep 100.0 8.7E-41 1.9E-45 327.9 18.8 195 400-638 5-209 (268)
294 TIGR02324 CP_lyasePhnL phospho 100.0 1.4E-40 3.1E-45 332.1 20.9 202 400-612 2-222 (224)
295 PRK10535 macrolide transporter 100.0 2E-40 4.3E-45 378.3 23.4 217 399-627 4-231 (648)
296 TIGR02633 xylG D-xylose ABC tr 100.0 2.1E-40 4.5E-45 369.4 22.8 214 400-626 2-228 (500)
297 TIGR03771 anch_rpt_ABC anchore 100.0 2.5E-40 5.4E-45 329.8 20.3 197 423-638 1-209 (223)
298 TIGR03269 met_CoM_red_A2 methy 100.0 3.1E-40 6.8E-45 369.6 22.5 224 399-628 279-517 (520)
299 PRK13546 teichoic acids export 100.0 1E-39 2.2E-44 332.3 23.9 212 399-636 4-239 (264)
300 TIGR01166 cbiO cobalt transpor 100.0 1.8E-40 3.9E-45 322.8 17.1 177 414-602 4-189 (190)
301 PRK13545 tagH teichoic acids e 100.0 1.3E-39 2.8E-44 350.5 25.0 214 399-638 21-241 (549)
302 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 3.7E-40 8.1E-45 328.6 19.2 196 400-621 23-224 (224)
303 PRK13549 xylose transporter AT 100.0 3.5E-40 7.6E-45 367.8 21.1 218 399-627 259-493 (506)
304 PRK13541 cytochrome c biogenes 100.0 4E-40 8.8E-45 321.5 18.9 190 400-610 2-193 (195)
305 TIGR03269 met_CoM_red_A2 methy 100.0 4.3E-40 9.3E-45 368.5 21.6 214 400-628 1-258 (520)
306 COG4172 ABC-type uncharacteriz 100.0 1.7E-39 3.6E-44 328.3 23.3 228 399-637 276-525 (534)
307 COG4559 ABC-type hemin transpo 100.0 1.5E-39 3.2E-44 303.4 20.2 216 400-629 2-231 (259)
308 COG4181 Predicted ABC-type tra 100.0 8.6E-40 1.9E-44 294.6 17.8 210 399-619 6-226 (228)
309 COG4598 HisP ABC-type histidin 100.0 2.1E-40 4.6E-45 300.5 13.9 220 399-633 6-246 (256)
310 COG0411 LivG ABC-type branched 100.0 5.9E-40 1.3E-44 315.1 17.3 216 400-629 5-240 (250)
311 PRK09700 D-allose transporter 100.0 2.5E-39 5.4E-44 361.4 21.6 212 399-625 265-495 (510)
312 TIGR01257 rim_protein retinal- 100.0 5.1E-39 1.1E-43 391.1 24.9 217 398-628 927-1149(2272)
313 COG1137 YhbG ABC-type (unclass 100.0 4.3E-40 9.3E-45 304.3 11.5 222 399-629 4-229 (243)
314 TIGR01187 potA spermidine/putr 100.0 3.4E-39 7.5E-44 338.5 19.8 188 433-634 1-196 (325)
315 TIGR01257 rim_protein retinal- 100.0 4.8E-37 1E-41 374.0 40.9 217 398-628 1936-2159(2272)
316 TIGR00956 3a01205 Pleiotropic 100.0 5.2E-39 1.1E-43 391.2 23.4 216 399-625 759-990 (1394)
317 COG1129 MglA ABC-type sugar tr 100.0 1.6E-38 3.6E-43 338.5 24.0 214 399-622 8-228 (500)
318 TIGR02633 xylG D-xylose ABC tr 100.0 5.5E-39 1.2E-43 358.0 21.1 217 399-625 257-489 (500)
319 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 1.5E-38 3.2E-43 357.9 23.0 212 399-628 4-248 (552)
320 PRK11819 putative ABC transpor 100.0 1.8E-38 3.8E-43 357.4 22.7 212 399-628 6-250 (556)
321 PRK10762 D-ribose transporter 100.0 1.3E-38 2.9E-43 354.6 20.5 211 399-627 257-483 (501)
322 PRK11288 araG L-arabinose tran 100.0 1.2E-38 2.6E-43 355.0 20.1 212 399-627 257-484 (501)
323 cd03237 ABC_RNaseL_inhibitor_d 100.0 2.5E-38 5.5E-43 319.0 20.3 195 407-627 1-206 (246)
324 PRK15064 ABC transporter ATP-b 100.0 2.7E-38 5.8E-43 354.6 22.7 211 400-628 2-242 (530)
325 COG4148 ModC ABC-type molybdat 100.0 7.8E-39 1.7E-43 309.7 15.7 196 420-629 16-219 (352)
326 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 4.5E-38 9.8E-43 291.2 18.7 143 400-616 1-144 (144)
327 PRK15177 Vi polysaccharide exp 100.0 3.5E-38 7.6E-43 311.7 19.0 188 417-628 2-192 (213)
328 PRK15064 ABC transporter ATP-b 100.0 5.8E-38 1.3E-42 351.9 23.1 203 399-629 319-526 (530)
329 cd03236 ABC_RNaseL_inhibitor_d 100.0 1.8E-38 3.9E-43 321.3 16.9 202 403-621 4-220 (255)
330 COG4525 TauB ABC-type taurine 100.0 3.5E-38 7.5E-43 290.1 16.1 205 400-622 4-218 (259)
331 COG4161 ArtP ABC-type arginine 100.0 5.4E-38 1.2E-42 280.0 16.2 224 399-637 2-239 (242)
332 PRK15439 autoinducer 2 ABC tra 100.0 9E-38 2E-42 348.3 20.5 211 399-628 268-492 (510)
333 PRK10938 putative molybdenum t 100.0 2.4E-37 5.3E-42 344.0 19.3 209 399-620 260-484 (490)
334 PRK10982 galactose/methyl gala 100.0 8.4E-37 1.8E-41 339.5 23.1 215 399-625 250-477 (491)
335 COG4604 CeuD ABC-type enteroch 100.0 1.9E-37 4.1E-42 285.8 14.4 224 400-639 2-234 (252)
336 COG3845 ABC-type uncharacteriz 100.0 6.3E-37 1.4E-41 319.4 20.2 212 399-620 4-221 (501)
337 cd00267 ABC_ATPase ABC (ATP-bi 100.0 2.3E-36 5.1E-41 284.6 19.2 154 402-616 2-157 (157)
338 PLN03073 ABC transporter F fam 100.0 2.6E-36 5.6E-41 344.6 23.3 199 399-626 508-712 (718)
339 PLN03140 ABC transporter G fam 100.0 3.4E-36 7.3E-41 365.3 24.1 216 399-624 867-1106(1470)
340 PRK11819 putative ABC transpor 100.0 5.5E-36 1.2E-40 337.2 23.4 205 399-629 324-534 (556)
341 cd03222 ABC_RNaseL_inhibitor T 100.0 2.3E-36 4.9E-41 287.8 16.6 145 403-618 4-151 (177)
342 PRK10636 putative ABC transpor 100.0 6.2E-36 1.3E-40 340.5 22.5 200 399-627 312-516 (638)
343 PRK11147 ABC transporter ATPas 100.0 9E-36 1.9E-40 340.0 23.3 203 399-628 319-528 (635)
344 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 1E-35 2.3E-40 334.9 23.5 203 399-628 322-531 (552)
345 cd03238 ABC_UvrA The excision 100.0 7.5E-36 1.6E-40 284.0 17.7 156 414-616 7-165 (176)
346 COG4172 ABC-type uncharacteriz 100.0 2.6E-35 5.7E-40 297.9 19.3 232 399-638 6-257 (534)
347 PRK13409 putative ATPase RIL; 100.0 2.2E-35 4.9E-40 331.2 20.8 194 399-624 340-538 (590)
348 COG1101 PhnK ABC-type uncharac 100.0 1.9E-35 4.1E-40 276.5 15.5 208 413-620 17-230 (263)
349 PRK10636 putative ABC transpor 100.0 7.7E-35 1.7E-39 331.5 23.9 211 400-628 2-236 (638)
350 COG1119 ModF ABC-type molybden 100.0 7.3E-35 1.6E-39 279.8 19.7 213 399-622 31-256 (257)
351 TIGR00956 3a01205 Pleiotropic 100.0 2.7E-35 5.8E-40 358.8 19.8 205 415-627 74-299 (1394)
352 COG4167 SapF ABC-type antimicr 100.0 4.3E-35 9.3E-40 266.7 15.8 217 400-630 5-241 (267)
353 PRK11147 ABC transporter ATPas 100.0 3.8E-34 8.3E-39 326.6 23.9 209 400-628 4-243 (635)
354 PLN03140 ABC transporter G fam 100.0 5.9E-35 1.3E-39 354.4 17.5 210 415-627 178-426 (1470)
355 COG4136 ABC-type uncharacteriz 100.0 2.8E-34 6.1E-39 253.3 14.7 198 399-612 2-207 (213)
356 PRK13409 putative ATPase RIL; 100.0 1.6E-34 3.6E-39 324.3 15.0 193 403-615 77-287 (590)
357 KOG0064|consensus 100.0 2.6E-30 5.6E-35 268.8 41.0 501 86-613 126-682 (728)
358 KOG0061|consensus 100.0 1.6E-33 3.4E-38 316.9 17.7 220 398-627 24-259 (613)
359 COG0396 sufC Cysteine desulfur 100.0 1.8E-32 4E-37 260.1 21.8 217 400-628 4-233 (251)
360 COG0488 Uup ATPase components 100.0 6.4E-33 1.4E-37 303.6 21.3 206 399-629 3-241 (530)
361 PF00005 ABC_tran: ABC transpo 100.0 7E-34 1.5E-38 261.4 11.2 136 418-570 1-137 (137)
362 PLN03073 ABC transporter F fam 100.0 4.3E-33 9.4E-38 318.2 19.4 223 399-628 177-431 (718)
363 COG4674 Uncharacterized ABC-ty 100.0 1E-32 2.2E-37 254.2 15.6 217 399-629 5-236 (249)
364 COG1134 TagH ABC-type polysacc 100.0 6.4E-32 1.4E-36 260.1 17.3 191 414-628 39-236 (249)
365 COG4152 ABC-type uncharacteriz 100.0 2.3E-32 5.1E-37 260.3 13.1 214 399-628 2-219 (300)
366 COG0488 Uup ATPase components 100.0 8.2E-31 1.8E-35 287.0 25.6 202 399-629 321-526 (530)
367 COG4133 CcmA ABC-type transpor 100.0 9.5E-32 2.1E-36 247.4 13.5 191 400-605 3-195 (209)
368 COG4107 PhnK ABC-type phosphon 100.0 4.8E-31 1E-35 238.4 16.4 229 399-639 6-252 (258)
369 cd03270 ABC_UvrA_I The excisio 100.0 3.9E-31 8.4E-36 263.7 17.2 192 414-621 7-226 (226)
370 cd03271 ABC_UvrA_II The excisi 100.0 4.1E-31 8.9E-36 266.3 16.6 194 416-623 9-261 (261)
371 cd03278 ABC_SMC_barmotin Barmo 100.0 1.6E-30 3.5E-35 253.3 14.3 164 419-614 14-190 (197)
372 COG4586 ABC-type uncharacteriz 100.0 1.9E-30 4.1E-35 251.2 11.5 206 416-635 38-252 (325)
373 cd03272 ABC_SMC3_euk Eukaryoti 100.0 4.8E-29 1E-33 252.1 14.9 192 399-613 3-234 (243)
374 PF00664 ABC_membrane: ABC tra 100.0 1.4E-25 3.1E-30 227.7 39.6 273 81-354 2-275 (275)
375 cd03279 ABC_sbcCD SbcCD and ot 100.0 2.8E-29 6E-34 248.4 11.9 192 399-617 5-211 (213)
376 COG4778 PhnL ABC-type phosphon 100.0 7.1E-29 1.5E-33 223.7 11.2 203 400-614 5-227 (235)
377 cd03273 ABC_SMC2_euk Eukaryoti 99.9 1.2E-27 2.7E-32 242.7 13.4 185 428-613 25-242 (251)
378 KOG0059|consensus 99.9 2.9E-25 6.3E-30 260.6 33.9 217 398-628 563-787 (885)
379 cd03240 ABC_Rad50 The catalyti 99.9 3.1E-27 6.6E-32 231.7 13.5 162 422-614 17-197 (204)
380 KOG0927|consensus 99.9 1.7E-27 3.6E-32 249.9 11.3 199 398-623 388-591 (614)
381 PRK00349 uvrA excinuclease ABC 99.9 1E-26 2.3E-31 269.5 18.9 111 530-640 818-939 (943)
382 COG4138 BtuD ABC-type cobalami 99.9 1.1E-27 2.4E-32 216.9 6.3 209 400-629 4-222 (248)
383 PRK00635 excinuclease ABC subu 99.9 5.9E-26 1.3E-30 273.2 22.5 215 399-629 600-907 (1809)
384 cd03274 ABC_SMC4_euk Eukaryoti 99.9 4E-27 8.7E-32 232.0 10.1 185 399-614 5-204 (212)
385 cd03275 ABC_SMC1_euk Eukaryoti 99.9 5.2E-26 1.1E-30 230.1 11.4 185 429-614 23-233 (247)
386 COG1129 MglA ABC-type sugar tr 99.9 4.7E-25 1E-29 235.7 17.9 213 400-625 264-487 (500)
387 KOG0065|consensus 99.9 7.6E-26 1.7E-30 259.4 12.7 214 401-624 789-1017(1391)
388 TIGR00630 uvra excinuclease AB 99.9 8E-25 1.7E-29 253.4 20.4 97 530-626 816-923 (924)
389 COG3845 ABC-type uncharacteriz 99.9 1.9E-23 4.2E-28 218.7 22.2 219 399-625 257-489 (501)
390 KOG0062|consensus 99.9 7.1E-24 1.5E-28 221.6 15.8 195 398-619 361-559 (582)
391 KOG0927|consensus 99.9 8.2E-23 1.8E-27 214.8 17.8 223 396-629 72-310 (614)
392 KOG0066|consensus 99.9 3.1E-23 6.7E-28 211.4 13.7 198 399-625 586-788 (807)
393 cd03276 ABC_SMC6_euk Eukaryoti 99.9 5.5E-23 1.2E-27 200.5 11.9 169 419-616 13-192 (198)
394 KOG0062|consensus 99.9 7.1E-23 1.5E-27 214.1 10.2 205 397-629 78-286 (582)
395 cd01128 rho_factor Transcripti 99.9 1.1E-22 2.5E-27 203.6 9.2 197 422-641 10-229 (249)
396 cd03239 ABC_SMC_head The struc 99.9 8.1E-22 1.8E-26 188.8 14.3 85 524-614 83-172 (178)
397 COG1245 Predicted ATPase, RNas 99.9 6.9E-22 1.5E-26 203.6 13.0 183 404-614 340-531 (591)
398 COG0178 UvrA Excinuclease ATPa 99.9 7.9E-21 1.7E-25 208.2 17.0 109 530-638 810-929 (935)
399 COG4170 SapD ABC-type antimicr 99.9 6.5E-21 1.4E-25 177.8 13.7 229 401-639 5-259 (330)
400 cd03277 ABC_SMC5_euk Eukaryoti 99.8 3.5E-21 7.6E-26 189.8 10.6 180 419-616 15-211 (213)
401 KOG2355|consensus 99.8 2.3E-20 5.1E-25 173.7 15.1 211 397-626 11-235 (291)
402 PRK00635 excinuclease ABC subu 99.8 2.2E-20 4.7E-25 225.6 17.5 207 418-637 1506-1805(1809)
403 cd03241 ABC_RecN RecN ATPase i 99.8 1.7E-20 3.8E-25 192.8 14.2 76 541-616 170-249 (276)
404 KOG0065|consensus 99.8 1.6E-20 3.5E-25 216.0 13.4 206 414-627 127-350 (1391)
405 cd03280 ABC_MutS2 MutS2 homolo 99.8 2.1E-20 4.6E-25 183.1 10.6 145 418-621 17-172 (200)
406 COG2401 ABC-type ATPase fused 99.8 2.8E-20 6.1E-25 189.5 9.4 181 415-618 396-588 (593)
407 cd03227 ABC_Class2 ABC-type Cl 99.8 1E-18 2.2E-23 165.2 13.3 135 422-614 15-155 (162)
408 COG1245 Predicted ATPase, RNas 99.8 3.3E-19 7.1E-24 184.0 9.8 189 404-613 79-287 (591)
409 cd03242 ABC_RecF RecF is a rec 99.8 4.1E-18 8.9E-23 174.7 14.4 193 419-617 13-269 (270)
410 cd03285 ABC_MSH2_euk MutS2 hom 99.7 6E-18 1.3E-22 167.8 11.4 153 414-622 16-175 (222)
411 cd00820 PEPCK_HprK Phosphoenol 99.7 2.3E-18 5E-23 148.1 5.6 76 415-498 2-77 (107)
412 TIGR00630 uvra excinuclease AB 99.7 1.7E-17 3.7E-22 192.8 12.8 100 530-629 475-584 (924)
413 cd03283 ABC_MutS-like MutS-lik 99.7 2E-17 4.3E-22 161.4 7.7 138 415-606 14-154 (199)
414 cd03243 ABC_MutS_homologs The 99.7 2.8E-17 6E-22 161.3 7.9 153 421-626 22-177 (202)
415 PRK00349 uvrA excinuclease ABC 99.7 1.1E-16 2.3E-21 186.6 13.2 100 530-629 477-586 (943)
416 TIGR00606 rad50 rad50. This fa 99.7 9.6E-17 2.1E-21 197.0 13.4 134 487-628 1153-1308(1311)
417 TIGR02858 spore_III_AA stage I 99.7 1.6E-16 3.4E-21 161.2 11.7 142 429-627 112-268 (270)
418 PRK00064 recF recombination pr 99.6 9.8E-15 2.1E-19 155.5 15.7 76 540-617 272-359 (361)
419 cd03282 ABC_MSH4_euk MutS4 hom 99.6 4.4E-15 9.5E-20 145.2 10.8 141 414-607 15-158 (204)
420 PF02463 SMC_N: RecF/RecN/SMC 99.6 9.2E-15 2E-19 145.5 10.8 73 541-613 136-212 (220)
421 cd03284 ABC_MutS1 MutS1 homolo 99.6 9.7E-15 2.1E-19 144.3 9.7 151 415-626 18-179 (216)
422 KOG0066|consensus 99.6 6.6E-15 1.4E-19 151.0 8.1 198 399-624 264-495 (807)
423 KOG0063|consensus 99.5 3.2E-14 7E-19 146.1 12.2 196 406-628 342-548 (592)
424 PHA02562 46 endonuclease subun 99.5 1.1E-14 2.3E-19 165.5 8.9 107 509-617 431-555 (562)
425 PRK07721 fliI flagellum-specif 99.5 1.3E-12 2.7E-17 141.0 16.2 177 415-625 146-340 (438)
426 cd03281 ABC_MSH5_euk MutS5 hom 99.4 2.2E-12 4.7E-17 127.3 12.4 136 416-607 17-161 (213)
427 smart00534 MUTSac ATPase domai 99.4 3.9E-13 8.5E-18 129.9 5.9 71 535-608 55-130 (185)
428 PTZ00132 GTP-binding nuclear p 99.4 5E-13 1.1E-17 132.5 5.7 44 545-588 156-204 (215)
429 TIGR01069 mutS2 MutS2 family p 99.4 4.5E-12 9.8E-17 146.4 14.0 150 399-604 295-449 (771)
430 TIGR00634 recN DNA repair prot 99.4 1.8E-12 3.8E-17 146.4 10.1 78 539-616 438-519 (563)
431 PRK13695 putative NTPase; Prov 99.4 1E-12 2.2E-17 125.8 6.8 81 537-620 74-156 (174)
432 COG0178 UvrA Excinuclease ATPa 99.4 6.2E-12 1.3E-16 139.1 13.5 164 453-637 410-586 (935)
433 PRK10869 recombination and rep 99.3 2.8E-12 6.1E-17 143.5 10.1 77 540-616 429-509 (553)
434 PRK10733 hflB ATP-dependent me 99.3 6E-13 1.3E-17 151.8 2.2 196 225-454 8-211 (644)
435 PRK14079 recF recombination pr 99.3 3.3E-11 7.2E-16 127.8 14.8 76 540-620 262-346 (349)
436 cd03287 ABC_MSH3_euk MutS3 hom 99.3 5.4E-12 1.2E-16 124.8 7.9 48 415-462 18-66 (222)
437 PRK11098 microcin B17 transpor 99.3 6.9E-08 1.5E-12 102.9 38.7 275 91-381 105-396 (409)
438 PRK08533 flagellar accessory p 99.2 8.8E-11 1.9E-15 117.3 14.3 157 400-613 8-184 (230)
439 TIGR00611 recf recF protein. A 99.2 6.4E-11 1.4E-15 126.1 13.0 63 540-604 274-345 (365)
440 PRK12369 putative transporter; 99.2 2.5E-07 5.4E-12 96.7 38.6 282 86-380 25-321 (326)
441 TIGR02788 VirB11 P-type DNA tr 99.2 1.8E-11 3.8E-16 127.9 7.7 143 421-627 137-280 (308)
442 PRK00409 recombination and DNA 99.2 1.1E-10 2.3E-15 135.5 13.0 150 416-618 316-468 (782)
443 PF06472 ABC_membrane_2: ABC t 99.2 2.9E-07 6.3E-12 95.0 35.9 226 83-313 32-262 (281)
444 TIGR03238 dnd_assoc_3 dnd syst 99.2 2E-11 4.2E-16 130.2 4.4 66 416-484 20-86 (504)
445 KOG0063|consensus 99.2 5.9E-11 1.3E-15 122.4 7.6 171 426-613 98-287 (592)
446 PRK01156 chromosome segregatio 99.1 1.1E-10 2.4E-15 139.6 10.1 76 538-613 798-883 (895)
447 PRK06793 fliI flagellum-specif 99.1 6.8E-10 1.5E-14 119.1 13.0 168 399-622 130-305 (432)
448 PRK13830 conjugal transfer pro 99.1 9.2E-10 2E-14 129.1 14.7 67 556-622 649-727 (818)
449 PF13748 ABC_membrane_3: ABC t 99.1 5E-07 1.1E-11 87.8 30.7 175 71-260 3-177 (237)
450 PRK03918 chromosome segregatio 99.1 2.3E-10 5E-15 137.0 9.5 75 540-614 787-868 (880)
451 cd01124 KaiC KaiC is a circadi 99.1 8E-10 1.7E-14 106.8 11.4 85 530-614 60-164 (187)
452 PRK00300 gmk guanylate kinase; 99.1 3.2E-10 6.9E-15 111.5 7.6 78 426-515 3-92 (205)
453 cd01131 PilT Pilus retraction 99.0 4.7E-10 1E-14 109.6 8.3 119 430-613 3-122 (198)
454 TIGR02168 SMC_prok_B chromosom 99.0 3E-10 6.5E-15 140.2 8.4 76 538-613 1086-1165(1179)
455 TIGR00618 sbcc exonuclease Sbc 99.0 7.8E-10 1.7E-14 133.8 10.4 77 539-615 948-1036(1042)
456 cd01120 RecA-like_NTPases RecA 99.0 1.9E-09 4.1E-14 101.2 9.9 129 430-603 1-140 (165)
457 TIGR00767 rho transcription te 99.0 1.8E-09 3.8E-14 113.7 10.3 82 367-455 103-195 (415)
458 smart00382 AAA ATPases associa 99.0 2.2E-08 4.7E-13 90.8 16.0 117 427-599 1-125 (148)
459 cd03286 ABC_MSH6_euk MutS6 hom 99.0 4.2E-09 9.1E-14 103.9 11.9 139 414-606 16-159 (218)
460 TIGR02169 SMC_prok_A chromosom 99.0 1.2E-09 2.6E-14 134.9 9.0 85 530-614 1057-1151(1164)
461 PF13304 AAA_21: AAA domain; P 98.9 5E-09 1.1E-13 105.7 7.9 64 540-603 235-302 (303)
462 PRK02224 chromosome segregatio 98.8 6.4E-09 1.4E-13 124.5 9.0 76 540-615 780-869 (880)
463 PRK06067 flagellar accessory p 98.8 6.7E-08 1.5E-12 97.1 14.5 150 424-614 21-187 (234)
464 PRK06002 fliI flagellum-specif 98.8 9.4E-09 2E-13 110.4 8.1 87 397-486 137-230 (450)
465 PRK10246 exonuclease subunit S 98.8 1.4E-08 3E-13 122.5 9.5 75 539-613 947-1031(1047)
466 PF05992 SbmA_BacA: SbmA/BacA- 98.7 0.00015 3.3E-09 73.7 35.6 238 127-379 62-312 (315)
467 PRK01889 GTPase RsgA; Reviewed 98.7 1.4E-08 3E-13 108.0 5.3 135 417-559 184-321 (356)
468 COG3910 Predicted ATPase [Gene 98.7 1.6E-07 3.4E-12 87.6 11.1 84 541-626 129-214 (233)
469 PRK13891 conjugal transfer pro 98.7 4.2E-07 9.2E-12 107.3 16.7 54 552-605 680-735 (852)
470 cd01130 VirB11-like_ATPase Typ 98.7 5E-08 1.1E-12 94.4 7.2 78 417-497 14-94 (186)
471 PF09818 ABC_ATPase: Predicted 98.6 3.1E-07 6.8E-12 97.0 12.1 172 405-618 227-417 (448)
472 cd01125 repA Hexameric Replica 98.6 1.2E-07 2.6E-12 95.5 8.8 45 555-600 107-159 (239)
473 TIGR01420 pilT_fam pilus retra 98.6 1.3E-07 2.8E-12 100.3 8.9 123 425-612 119-242 (343)
474 PRK07196 fliI flagellum-specif 98.6 4.8E-08 1E-12 105.0 5.5 82 415-497 143-234 (434)
475 PRK06995 flhF flagellar biosyn 98.5 1.3E-07 2.8E-12 103.1 5.0 161 421-618 249-430 (484)
476 TIGR02524 dot_icm_DotB Dot/Icm 98.5 2.6E-07 5.7E-12 98.0 7.0 92 426-519 132-235 (358)
477 cd02023 UMPK Uridine monophosp 98.5 3.1E-07 6.7E-12 89.8 7.0 108 430-574 1-113 (198)
478 TIGR00101 ureG urease accessor 98.4 3.9E-07 8.5E-12 89.0 7.0 103 430-546 3-108 (199)
479 PRK09825 idnK D-gluconate kina 98.4 2.1E-07 4.6E-12 89.0 5.0 65 427-497 2-68 (176)
480 PRK08149 ATP synthase SpaL; Va 98.4 2.5E-07 5.3E-12 99.4 5.7 69 415-484 139-214 (428)
481 TIGR00235 udk uridine kinase. 98.4 2E-07 4.3E-12 91.8 4.5 44 426-490 4-47 (207)
482 PRK10078 ribose 1,5-bisphospho 98.4 2.9E-07 6.3E-12 89.1 5.3 56 427-485 1-56 (186)
483 TIGR03263 guanyl_kin guanylate 98.4 2.4E-07 5.2E-12 89.0 3.8 78 428-517 1-90 (180)
484 PRK13898 type IV secretion sys 98.4 8.8E-06 1.9E-10 96.1 17.6 47 420-466 438-484 (800)
485 TIGR02655 circ_KaiC circadian 98.4 1.7E-07 3.6E-12 104.1 2.8 156 424-613 17-190 (484)
486 PLN02796 D-glycerate 3-kinase 98.3 2.2E-07 4.9E-12 96.5 2.5 62 415-476 79-151 (347)
487 cd00071 GMPK Guanosine monopho 98.3 3.1E-07 6.6E-12 84.2 3.0 64 431-500 2-78 (137)
488 PRK00454 engB GTP-binding prot 98.3 1.2E-06 2.5E-11 85.2 6.9 53 534-590 140-195 (196)
489 TIGR01026 fliI_yscN ATPase Fli 98.3 4E-06 8.6E-11 91.1 11.3 176 415-625 151-345 (440)
490 TIGR02322 phosphon_PhnN phosph 98.3 1.5E-06 3.2E-11 83.5 6.9 62 428-490 1-78 (179)
491 TIGR02680 conserved hypothetic 98.3 1.2E-06 2.7E-11 108.0 7.7 61 538-600 1244-1316(1353)
492 cd00009 AAA The AAA+ (ATPases 98.3 8.5E-06 1.9E-10 74.3 11.6 54 547-601 72-131 (151)
493 PLN03210 Resistant to P. syrin 98.3 2.3E-06 5E-11 105.0 9.9 44 420-463 199-243 (1153)
494 COG0419 SbcC ATPase involved i 98.3 2.2E-06 4.8E-11 102.6 9.2 78 538-615 812-898 (908)
495 PRK05480 uridine/cytidine kina 98.3 1.8E-06 3.8E-11 85.2 7.1 71 426-519 4-79 (209)
496 PRK09183 transposase/IS protei 98.2 5E-06 1.1E-10 84.6 10.1 53 401-454 73-128 (259)
497 PRK06315 type III secretion sy 98.2 1.5E-06 3.2E-11 93.9 5.2 104 416-520 153-276 (442)
498 cd01123 Rad51_DMC1_radA Rad51_ 98.2 2.9E-06 6.3E-11 85.2 6.9 72 424-501 15-93 (235)
499 PRK15494 era GTPase Era; Provi 98.2 1.1E-06 2.5E-11 92.9 4.0 56 395-452 14-76 (339)
500 COG3044 Predicted ATPase of th 98.2 1.8E-05 3.9E-10 82.1 12.4 153 422-618 237-412 (554)
No 1
>KOG0058|consensus
Probab=100.00 E-value=2e-125 Score=1020.35 Aligned_cols=574 Identities=49% Similarity=0.820 Sum_probs=548.9
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 64 SELKKLFTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVY 143 (644)
Q Consensus 64 ~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 143 (644)
..+++++.+.+++|+++..++++.+++++..+..|.+++.++|.+....+ . ...+......+.++++.+++++.+|.+
T Consensus 133 ~~~~rl~~l~~~~~~~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~~-~-~~~~~~~~~~l~~l~~~~a~~~~~r~~ 210 (716)
T KOG0058|consen 133 TLLKRLLGLLKPEWKWLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGDD-S-ADALKRACTILLGLFLIGALANAIRGG 210 (716)
T ss_pred hHHHHHHHHhchhHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhccc-h-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47789999999999999999999999999999999999999999887211 1 344555666777788899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 144 LMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKL 223 (644)
Q Consensus 144 ~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l 223 (644)
++..++.++..++|.++|.++++++.+|||++.+||++||+++|++.+.+.++.++...+.++++.++.+++|+++||.+
T Consensus 211 ~~~~a~~rv~~rlR~~lF~sil~QdiaFFD~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~~L 290 (716)
T KOG0058|consen 211 LLQYAGERVVARLRTDLFRSLLRQDIAFFDENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSWRL 290 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 224 ALISLIIVPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALA 303 (644)
Q Consensus 224 ~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 303 (644)
+++.++.+|+++++..+++++.++.+++.+++.++.++...|.+++|+|||+|+.|+.+.++|.+..++.++...|....
T Consensus 291 tlv~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~a 370 (716)
T KOG0058|consen 291 TLVTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAVA 370 (716)
T ss_pred HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy5743 304 KGVFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMEREPL 383 (644)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~~t~g~l~a~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~Rl~~~l~~~~~ 383 (644)
...+.+..++..++..+.++++|++++..|+||.|.+++|+.|..++..++..++.++.+++++..|.+|++|+++.+|.
T Consensus 371 ~~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~ 450 (716)
T KOG0058|consen 371 YGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPR 450 (716)
T ss_pred hhHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ccCCCCCccCCCCCccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECC
Q psy5743 384 ISTSGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDG 463 (644)
Q Consensus 384 ~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg 463 (644)
.+.++...|. ...|.|+|+||+|+||.+++.+||+|+||+|+|||+||+||||||||||+++||++||+|++|+|.+||
T Consensus 451 i~~~G~~~p~-~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG 529 (716)
T KOG0058|consen 451 IPLTGTLAPD-HLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDG 529 (716)
T ss_pred CCCCCccccc-cccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECC
Confidence 7666433333 567899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCC
Q psy5743 464 VDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLS 543 (644)
Q Consensus 464 ~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LS 543 (644)
+||+++++.+||++||+|.|||.||++||+|||.||.++ +++|||++|++.|+.||||.++|+||||.|||+|.+||
T Consensus 530 ~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~---~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLS 606 (716)
T KOG0058|consen 530 VPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDN---ATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLS 606 (716)
T ss_pred eehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCC---CCHHHHHHHHHHhChHHHHHhCccccccccCCcccccc
Confidence 999999999999999999999999999999999999885 99999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEecCh
Q psy5743 544 GGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSY 623 (644)
Q Consensus 544 GGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~ 623 (644)
|||||||||||||+|||.||||||||||||+++|..|+++|.+.++++|||+|||||+|+++||+|+|+++|+|+|.|+|
T Consensus 607 GGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~h 686 (716)
T KOG0058|consen 607 GGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGTH 686 (716)
T ss_pred chHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEecccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhcCCCcHHHHHHHhhcC
Q psy5743 624 AHLIKNPNSMFNKLMKYQTM 643 (644)
Q Consensus 624 ~eLl~~~~~~y~~l~~~q~~ 643 (644)
+||+++++|.|++|+++|..
T Consensus 687 ~eLl~~~~gly~~Lv~~q~~ 706 (716)
T KOG0058|consen 687 DELLSKPNGLYAKLVQRQLD 706 (716)
T ss_pred HHHhhCcccHHHHHHHHhcc
Confidence 99999877999999999975
No 2
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=2.4e-116 Score=988.30 Aligned_cols=607 Identities=33% Similarity=0.511 Sum_probs=568.1
Q ss_pred cccccccccchhccchhhhhhhcccC-----CCCCcccccccchHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 25 KIISHKPFSKWKLQNNEKIISRYYTS-----TPNNQKVGTKIKKSELKKLFTLAKSEKRKLTGAVCLLLVSSSITMAVPF 99 (644)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~ 99 (644)
+.++.||+.|.+..+. .+....+++ .|.......+.++..+.+++..+.++|+.+...++.+++.++++++.|+
T Consensus 97 ~~~v~dp~~g~~~l~~-~e~~~~~tg~~l~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~l~~v~~~sl~l~i~~l~~p~ 175 (709)
T COG2274 97 KVVVLDPAKGIRRLSL-EEFEKLWTGIALLLAPTASRKFKDIPPFGLSWFIPLLFKYRRLLFEVLLASLLLQLLALATPL 175 (709)
T ss_pred eEEEEeCCCCcEEcCH-HHHHHhhheeEEEEecccccccccccccchHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999888765555 666666664 3443311222344567889999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccChhH
Q psy5743 100 ALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVYLMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGE 179 (644)
Q Consensus 100 ~~~~~id~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~ 179 (644)
+++.++|.++...+ ...+.++++++++..++..++..+|.|+..+.+.++..++...+|+|++++|+.||+++++||
T Consensus 176 ~~q~viD~Vl~~~~---~~tL~vl~ig~~~~~l~~~~l~~lr~~~~~~~~~rld~~l~~~~~~hll~Lpl~~f~~r~~Ge 252 (709)
T COG2274 176 FSQIVIDKVLPDAS---RSTLTVLAIGLLLAALFEALLRLLRTYLIAHLGKRLDLELSGRFFRHLLRLPLSYFEKRSVGE 252 (709)
T ss_pred HHHHHHHhhhccCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCcHHHccCCChhh
Confidence 99999999987654 456788888888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 180 LINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLALISLIIVPPVAGLAIVYGKFVRKITRNVQDKLANA 259 (644)
Q Consensus 180 i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (644)
+++|++ |.+.|+++++..+...+.+++++++.+++|++++|.+++++++.+|+++++..++.+.+++..++..+..++.
T Consensus 253 ~~sR~~-el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys~~L~li~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~ 331 (709)
T COG2274 253 IISRVR-ELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQ 331 (709)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998 8899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHchHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHhH
Q psy5743 260 VQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAKGVFFGFTGLSGNAIILSVLYYGGVMVSYETITVGN 339 (644)
Q Consensus 260 ~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~~t~g~ 339 (644)
++.+.|++.|+++||+.+.|.++..+|++...+..+...+..+.........+++..+..++++|+|+++|++|.+|+|.
T Consensus 332 ~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~ 411 (709)
T COG2274 332 QSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQ 411 (709)
T ss_pred hhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCCCCccCCCCCccEEEEEEEEEcCCCCCCcccc
Q psy5743 340 LSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMEREPLISTSGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILN 419 (644)
Q Consensus 340 l~a~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~Rl~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~ 419 (644)
++||.++.+.+..|+..+.+++.++++...+.+|+.++++.|+|.+.+......++..|+|+|+||+|+|+.+ ++++|+
T Consensus 412 LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~~~~~~~~~~~g~I~~~nvsf~y~~~-~~~vL~ 490 (709)
T COG2274 412 LVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGDKTLIHLPKLQGEIEFENVSFRYGPD-DPPVLE 490 (709)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccccccccCceEEEEEEEEEeCCC-Ccchhh
Confidence 9999999999999999999999999999999999999999988754433223345567899999999999864 568999
Q ss_pred ceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcC
Q psy5743 420 DLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYG 499 (644)
Q Consensus 420 ~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g 499 (644)
|+||+|+|||+|||||+||||||||+|+|+|+|+|++|+|++||+|++++++.++|++||||+||++||+|||+|||+++
T Consensus 491 ~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~ 570 (709)
T COG2274 491 DLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALG 570 (709)
T ss_pred ceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHH
Q psy5743 500 VNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYL 579 (644)
Q Consensus 500 ~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~ 579 (644)
+|+ +++|++++||+.+++||||++||+||||+|||+|.+|||||||||+|||||+++|+||||||||||||+++|+.
T Consensus 571 ~p~---~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~ 647 (709)
T COG2274 571 NPE---ATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAI 647 (709)
T ss_pred CCC---CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHH
Confidence 997 89999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEecChhHHhcCCCcHHHHHHHhh
Q psy5743 580 VQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLMKYQ 641 (644)
Q Consensus 580 i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eLl~~~~~~y~~l~~~q 641 (644)
|.++|.+..+++|+|+||||++++++||+|+|||+|+|+|+|+|+||++. +|.|+++++.|
T Consensus 648 I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell~~-~g~y~~l~~~q 708 (709)
T COG2274 648 ILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQ-GGLYARLYQQQ 708 (709)
T ss_pred HHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCCceeccCCHHHHHHh-cChHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999998 89999999987
No 3
>KOG0055|consensus
Probab=100.00 E-value=9.6e-111 Score=953.48 Aligned_cols=577 Identities=36% Similarity=0.596 Sum_probs=541.2
Q ss_pred hHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 63 KSELKKLFTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRV 142 (644)
Q Consensus 63 ~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 142 (644)
+..+.+++++.+|+|+.++++.+.+++..+..++..+++++++..+..............|+++++++.+...+..+++.
T Consensus 649 ~~s~~~i~k~~~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~~~al~f~~l~~~~~i~~~~q~ 728 (1228)
T KOG0055|consen 649 KVSFWRIFKLNKPEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVRAWALIFLGLGIVSGITNFLQH 728 (1228)
T ss_pred cccHHHHHHhccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999887554333444334478888888889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCChhhhhc-cChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 143 YLMNVSAQSITKKLRERLFGSIISQETAYFDK-HKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISS 221 (644)
Q Consensus 143 ~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~-~~~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~ 221 (644)
|++...|.++..++|..+|+++++++.+|||. +++|.+.+|+.+|+..++..+...+..++.++..+++.+++.|+++|
T Consensus 729 ~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~nsg~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf~~~W 808 (1228)
T KOG0055|consen 729 YFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENSGALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAFIYGW 808 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999986 34499999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 222 KLALISLIIVPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEA 301 (644)
Q Consensus 222 ~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 301 (644)
.++++++++.|++++..+...+.+.....+..+..++..+...|+++|||||++|+.|+++.+.|.+..++..+...+..
T Consensus 809 ~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~~~~~~~ 888 (1228)
T KOG0055|consen 809 RLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRKSSFKRG 888 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy5743 302 LAKGVFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMERE 381 (644)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~~t~g~l~a~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~Rl~~~l~~~ 381 (644)
.+.++..++.+.+..+..++.+|+|++++.+|.+++..++-.+.....-...+.+...+.+++.++..|..+++++++.+
T Consensus 889 ~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF~i~dr~ 968 (1228)
T KOG0055|consen 889 LISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSIFEILDRK 968 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999888888888888999999999999999999999999998
Q ss_pred CCccCCC-CCccCCCCCccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEE
Q psy5743 382 PLISTSG-GKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKIL 460 (644)
Q Consensus 382 ~~~~~~~-~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~ 460 (644)
|..+... .....++..|+|+++||+|+||.+++.+||+|+||+|++||++|+||||||||||++.||.|+|+|++|.|.
T Consensus 969 ~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~ 1048 (1228)
T KOG0055|consen 969 PTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVK 1048 (1228)
T ss_pred CCCCCCCCCCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEE
Confidence 8544322 222234567899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCC
Q psy5743 461 IDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGI 540 (644)
Q Consensus 461 idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~ 540 (644)
|||+|+++++++++|+++|.|+|+|.||++||||||+||.++ ++++||.+||+.|++|+||.+||+||||.|||+|.
T Consensus 1049 IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~---vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~ 1125 (1228)
T KOG0055|consen 1049 IDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEE---VSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGV 1125 (1228)
T ss_pred ECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCC---CCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccC
Confidence 999999999999999999999999999999999999999543 89999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEe
Q psy5743 541 MLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEI 620 (644)
Q Consensus 541 ~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~ 620 (644)
+||||||||||||||++|||+||||||||||||+++|+.|+++|++...+||+|+|||||+|+++||.|.|+++|+|+|+
T Consensus 1126 QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE~ 1205 (1228)
T KOG0055|consen 1126 QLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQNADVIAVLKNGKVVEQ 1205 (1228)
T ss_pred cCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhcCCEEEEEECCEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhHHhcCCCcHHHHHHHhhcC
Q psy5743 621 GSYAHLIKNPNSMFNKLMKYQTM 643 (644)
Q Consensus 621 Gt~~eLl~~~~~~y~~l~~~q~~ 643 (644)
|||+||+++ +|.|++|++.|..
T Consensus 1206 GtH~~L~~~-~G~Y~~Lv~~q~~ 1227 (1228)
T KOG0055|consen 1206 GTHDELLAK-RGIYFRLVQLQSS 1227 (1228)
T ss_pred ccHHHHHhC-CCchHHHhhhccC
Confidence 999999995 8999999999863
No 4
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=2.4e-104 Score=901.00 Aligned_cols=570 Identities=23% Similarity=0.332 Sum_probs=504.0
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 65 ELKKLFTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVYL 144 (644)
Q Consensus 65 ~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 144 (644)
.+++++++++++++.++.+++++++..++.++.|+++++++|.+...+.. ...+..+..+++++.++..++.+++.+.
T Consensus 9 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (588)
T PRK11174 9 LTRWLKQQSKPAKRWLNLSILLGFLSGLLLIAQAWLLATILQALIIENIP--REALLPPFILLILLFVLRALLAWLRERV 86 (588)
T ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999987532111 1223333444555666778889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 145 MNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLA 224 (644)
Q Consensus 145 ~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~ 224 (644)
..+.+.++..++|..+|+|++++|+++|+++++|++++|+++|++.+++++...+..++.+++.+++.++++++++|+++
T Consensus 87 ~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 166 (588)
T PRK11174 87 GFKAGQHIRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWAAG 166 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 225 LISLIIVPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAK 304 (644)
Q Consensus 225 li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (644)
+++++++|+.+++..++.++.++..++..+..++.++.+.|.++|+++||+|++|+.+.++|.+..++..+...+..+..
T Consensus 167 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (588)
T PRK11174 167 LILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMA 246 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888899999999999999999999999999999999999999999999999999999888887777766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHhHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 305 GVFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNL---------SSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLW 375 (644)
Q Consensus 305 ~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~~t~g~l---------~a~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~Rl~ 375 (644)
.....+..++..+..+++++++++.+ .|.+|+|.+ ++++.+...+..|+..++..+..++++.++.+|+.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~ 325 (588)
T PRK11174 247 FLSSAVLEFFASISIALVAVYFGFSY-LGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLV 325 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666655555555545555555544 377787754 33346667888999999999999999999999999
Q ss_pred HHHhcCCCccCCCCCccCCCCCccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCC
Q psy5743 376 EIMEREPLISTSGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQ 455 (644)
Q Consensus 376 ~~l~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~ 455 (644)
++++.+++...........+..++|+++||+|.|++ ++++|+|+||+|+|||++|||||||||||||+++|+|+| |+
T Consensus 326 ~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vsf~~~~--~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~ 402 (588)
T PRK11174 326 TFLETPLAHPQQGEKELASNDPVTIEAEDLEILSPD--GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PY 402 (588)
T ss_pred HHHcCCCcccCCCccccCCCCCceEEEEeeEEeccC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CC
Confidence 999876542221111111112346999999998864 367999999999999999999999999999999999999 99
Q ss_pred CcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccc
Q psy5743 456 NGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIV 535 (644)
Q Consensus 456 ~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~i 535 (644)
+|+|++||+|+++++++++|++|+||||||+||+|||||||++|+|+ +++||+++|++.+++++||++||+||||.|
T Consensus 403 ~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~---~~~eei~~al~~a~l~~~i~~lp~G~dT~v 479 (588)
T PRK11174 403 QGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPD---ASDEQLQQALENAWVSEFLPLLPQGLDTPI 479 (588)
T ss_pred CcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCC---CCHHHHHHHHHHhCHHHHHHhccccccccc
Confidence 99999999999999999999999999999999999999999999876 899999999999999999999999999999
Q ss_pred cCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCC
Q psy5743 536 GERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKG 615 (644)
Q Consensus 536 ge~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G 615 (644)
||+|.+|||||||||+||||+++||+||||||||||||+++|+.|+++|++..+++|+|+||||++++++||+|++|++|
T Consensus 480 ge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G 559 (588)
T PRK11174 480 GDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQDG 559 (588)
T ss_pred ccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999998999999999999999999999999999
Q ss_pred eEEEecChhHHhcCCCcHHHHHHHhhcCC
Q psy5743 616 KIVEIGSYAHLIKNPNSMFNKLMKYQTMD 644 (644)
Q Consensus 616 ~ive~Gt~~eLl~~~~~~y~~l~~~q~~~ 644 (644)
+|+|+|+|+||+++ +|.|+++++.|.++
T Consensus 560 ~i~e~G~~~eL~~~-~~~y~~l~~~q~~~ 587 (588)
T PRK11174 560 QIVQQGDYAELSQA-GGLFATLLAHRQEE 587 (588)
T ss_pred eEeecCCHHHHHhc-chHHHHHHHHhhcC
Confidence 99999999999987 79999999999764
No 5
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=4.2e-104 Score=915.82 Aligned_cols=605 Identities=27% Similarity=0.415 Sum_probs=541.1
Q ss_pred cccccccc--ccchhccchhhhhhhcccC-----CCCCcccccccchHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q psy5743 24 FKIISHKP--FSKWKLQNNEKIISRYYTS-----TPNNQKVGTKIKKSELKKLFTLAKSEKRKLTGAVCLLLVSSSITMA 96 (644)
Q Consensus 24 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~ 96 (644)
.+++++|| +.|.+..+. +++...+++ .|+..+.+.+.+...+++++.+++++++.+...++++++..++.++
T Consensus 96 ~~~~i~dP~~~~g~~~~~~-~ef~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 174 (708)
T TIGR01193 96 NHLIIADPDPTVGITKISK-EDFYEEWTGIAIFISPTPEYKPIKEKENSLLKFIPLITRQKKLIVNIVIAAIIVTLISIA 174 (708)
T ss_pred CEEEEEcCCcccCCEEecH-HHHHhhCCCEEEEEEecccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999 777654454 666666666 4544444332223557788899999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccC
Q psy5743 97 VPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVYLMNVSAQSITKKLRERLFGSIISQETAYFDKHK 176 (644)
Q Consensus 97 ~p~~~~~~id~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~ 176 (644)
.|++++.++|.+..... ...+..+.++++++.++..++.+++.++..+.+.++..++|..+|+|++++|+.+|++++
T Consensus 175 ~p~~~~~iiD~v~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~f~~~~ 251 (708)
T TIGR01193 175 GSYYLQKIIDTYIPHKM---MGTLGIISIGLIIAYIIQQILSYIQIFLLNVLGQRLSIDIILSYIKHLFELPMSFFSTRR 251 (708)
T ss_pred HHHHHHHHHHHhhccCC---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCc
Confidence 99999999999876432 223444455555666777889999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 177 TGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLALISLIIVPPVAGLAIVYGKFVRKITRNVQDKL 256 (644)
Q Consensus 177 ~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 256 (644)
+|++++|++ |++.++++++..+...+.+++++++.++++++++|++++++++++|+++++..++.++.++..++..+..
T Consensus 252 ~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 330 (708)
T TIGR01193 252 TGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNMLLFLLSLLSIPVYAVIIILFKRTFNKLNHDAMQAN 330 (708)
T ss_pred hhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998 8999999999999998999888888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHchHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcC
Q psy5743 257 ANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAKGVFFGFTGLSGNAIILSVLYYGGVMVSYETIT 336 (644)
Q Consensus 257 ~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~~t 336 (644)
++.++.+.|.++|+++||++|.|+.+.++|.+...+..+...+..+.......+..++..+..++++++|++++.+|.+|
T Consensus 331 ~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~il~~g~~lv~~g~ls 410 (708)
T TIGR01193 331 AVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQGQQAIKAVTKLILNVVILWTGAYLVMRGKLT 410 (708)
T ss_pred HHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999998888888877777777777777777888899999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCCCCccCCCCCccEEEEEEEEEcCCCCCCc
Q psy5743 337 VGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMEREPLISTSGGKFFSHSLKGEIDFNNIRFSYPSRPDAV 416 (644)
Q Consensus 337 ~g~l~a~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~Rl~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~ 416 (644)
+|.++++..+...+..|+..+...+..++++..+.+|+.++++.+++.+......+.++..++|+++||+|+|++ +++
T Consensus 411 ~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~~~~~~~~~~~I~~~~vsf~y~~--~~~ 488 (708)
T TIGR01193 411 LGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFINKKKRTELNNLNGDIVINDVSYSYGY--GSN 488 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccCCCCCCCcEEEEEEEEEcCC--CCc
Confidence 999999999999999999999999999999999999999999876653322111112234467999999999973 467
Q ss_pred cccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHH
Q psy5743 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENI 496 (644)
Q Consensus 417 vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI 496 (644)
+|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++||+|+++++++++|++|+||||||+||+|||||||
T Consensus 489 iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi 568 (708)
T TIGR01193 489 ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENL 568 (708)
T ss_pred ceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcC-CCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHH
Q psy5743 497 LYG-VNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAE 575 (644)
Q Consensus 497 ~~g-~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~ 575 (644)
++| +|+ +++++++++++.++++++|++||+||||+|||+|.+|||||||||+||||++++|+|||||||||+||++
T Consensus 569 ~l~~~~~---~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~ 645 (708)
T TIGR01193 569 LLGAKEN---VSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTI 645 (708)
T ss_pred hccCCCC---CCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHH
Confidence 999 454 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEecChhHHhcCCCcHHHHHHHh
Q psy5743 576 NEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLMKY 640 (644)
Q Consensus 576 ~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eLl~~~~~~y~~l~~~ 640 (644)
+|+.+.+.|.+. +++|+|+||||+++++.||+|++|++|+++|.|+|+||+++ +|.|++++++
T Consensus 646 te~~i~~~L~~~-~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~~L~~~-~~~y~~l~~~ 708 (708)
T TIGR01193 646 TEKKIVNNLLNL-QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLDR-NGFYASLIHN 708 (708)
T ss_pred HHHHHHHHHHHh-cCCEEEEEecchHHHHcCCEEEEEECCEEEEECCHHHHHhc-CCcHHHHhhC
Confidence 999999999885 78999999999999999999999999999999999999987 7999999864
No 6
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=3.7e-104 Score=917.14 Aligned_cols=603 Identities=24% Similarity=0.349 Sum_probs=542.6
Q ss_pred ccccccccccchhccchhhhhhhcccC-----CCCCcccccccchHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy5743 24 FKIISHKPFSKWKLQNNEKIISRYYTS-----TPNNQKVGTKIKKSELKKLFTLAKSEKRKLTGAVCLLLVSSSITMAVP 98 (644)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~p 98 (644)
.+++++||+.|.+..+. +++...+++ .|+..+.+.+.+...+++++..++++++.+...++++++..++.++.|
T Consensus 96 ~~~~i~dP~~g~~~~~~-~e~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~p 174 (710)
T TIGR03796 96 GRVYLNDPALGPRTVSL-EEFDESFTGVVLTFEPGPEFQKGGRKPSLLRALWRRLRGSRGALLYLLLAGLLLVLPGLVIP 174 (710)
T ss_pred CEEEEECCCCCCEEccH-HHHHhhCCCeEEEEEECccccccCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37899999999765454 666666665 454444333223356778889999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccChh
Q psy5743 99 FALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVYLMNVSAQSITKKLRERLFGSIISQETAYFDKHKTG 178 (644)
Q Consensus 99 ~~~~~~id~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G 178 (644)
++++.++|.+...... ..+..++++++++.++..++.+++.++..+.+.++..++|..+|+|++++|+++|+++++|
T Consensus 175 ~~~~~iid~v~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~~~g 251 (710)
T TIGR03796 175 AFSQIFVDEILVQGRQ---DWLRPLLLGMGLTALLQGVLTWLQLYYLRRLQIKLAVGMSARFLWHILRLPVRFFAQRHAG 251 (710)
T ss_pred HHHHHHHHHHhhcCCh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCccc
Confidence 9999999988754432 2344455555666677788999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 179 ELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLALISLIIVPPVAGLAIVYGKFVRKITRNVQDKLAN 258 (644)
Q Consensus 179 ~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (644)
++++|+++| +.++++++..+..++.+++.+++.++++++++|++++++++++++++++..++.++.++..++..+..++
T Consensus 252 ~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (710)
T TIGR03796 252 DIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLTLIGIAFAAINVLALQLVSRRRVDANRRLQQDAGK 330 (710)
T ss_pred HHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988 7899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHchHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHh
Q psy5743 259 AVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAKGVFFGFTGLSGNAIILSVLYYGGVMVSYETITVG 338 (644)
Q Consensus 259 ~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~~t~g 338 (644)
.++.+.|.++|+++||++|+|+.+.++|.+...+..+...+..+.......+..++..+..++++++|++++.+|.+|+|
T Consensus 331 ~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G 410 (710)
T TIGR03796 331 LTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQILGVLPTLLTSLNSALILVVGGLRVMEGQLTIG 410 (710)
T ss_pred HHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHH
Confidence 99999999999999999999999999999999999988888888888877777778788888899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCC------CCccCCCCCccEEEEEEEEEcCCC
Q psy5743 339 NLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMEREPLISTSG------GKFFSHSLKGEIDFNNIRFSYPSR 412 (644)
Q Consensus 339 ~l~a~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~Rl~~~l~~~~~~~~~~------~~~~~~~~~~~I~~~~vsf~Y~~~ 412 (644)
.++++..+...+..|+..+...+..++++..+.+|+.++++.+++..... ...+.+...+.|+++||+|+|++.
T Consensus 411 ~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~ 490 (710)
T TIGR03796 411 MLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPL 490 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccccccccccccCCCCCCeEEEEEEEEecCCC
Confidence 99999999999999999999999999999999999999998766532221 011102234679999999999853
Q ss_pred CCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccH
Q psy5743 413 PDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTI 492 (644)
Q Consensus 413 ~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTI 492 (644)
++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++||+|+++++++++|++|+||||||++|+|||
T Consensus 491 -~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi 569 (710)
T TIGR03796 491 -EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTV 569 (710)
T ss_pred -CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccH
Confidence 4689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCC
Q psy5743 493 YENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSAL 572 (644)
Q Consensus 493 reNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaL 572 (644)
||||++++|+ ++++++++|++.++++++|.++|+||||+|||+|.+|||||||||+||||++++|+|||||||||||
T Consensus 570 ~eNi~l~~~~---~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~L 646 (710)
T TIGR03796 570 RDNLTLWDPT---IPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSAL 646 (710)
T ss_pred HHHhhCCCCC---CCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccC
Confidence 9999999876 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEecChhHHhcCCCcHHHHHH
Q psy5743 573 DAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLM 638 (644)
Q Consensus 573 D~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eLl~~~~~~y~~l~ 638 (644)
|+++|+.|.+.|.+ .++|+|+||||+++++.||+|++|++|+|+|.|+|+||+++ +|.|++++
T Consensus 647 D~~te~~i~~~l~~--~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~~~Ll~~-~~~y~~l~ 709 (710)
T TIGR03796 647 DPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWAV-GGAYARLI 709 (710)
T ss_pred CHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCEEEEEeCCEEEEecCHHHHHHc-CCcHHHHh
Confidence 99999999999987 48999999999999999999999999999999999999987 79999987
No 7
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=4e-103 Score=904.61 Aligned_cols=599 Identities=25% Similarity=0.377 Sum_probs=535.4
Q ss_pred cccccccccccchh-ccchhhhhhhcccC-----CCCCcccccccchHHHHHHHHH-hhhhhHHHHHHHHHHHHHHHHHH
Q psy5743 23 AFKIISHKPFSKWK-LQNNEKIISRYYTS-----TPNNQKVGTKIKKSELKKLFTL-AKSEKRKLTGAVCLLLVSSSITM 95 (644)
Q Consensus 23 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~l~~~~~~~~~~~~~~~ 95 (644)
-.+++++||+.|.+ ..+. ++...+ ++ .|.. ..+ ...+++++.. ++++|+.+...++++++.+++.+
T Consensus 81 ~~~~~i~dP~~g~~~~~~~-~e~~~~-~g~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 153 (686)
T TIGR03797 81 RGGYEIFDPATGTRRRVDA-AMAATL-APEAYMFYRPL--PDK---ALGLRDLLRFALRGARRDLLAILAMGLLGTLLGM 153 (686)
T ss_pred CCEEEEECCCCCCCcccCH-HHHHhc-CCEEEEEecCC--ccc---cccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 35689999999864 3333 444443 33 3442 111 1234555555 67899999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhcc
Q psy5743 96 AVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVYLMNVSAQSITKKLRERLFGSIISQETAYFDKH 175 (644)
Q Consensus 96 ~~p~~~~~~id~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~ 175 (644)
+.|++++.++|.++.... ...+..++++++++.++..++.+++.++..+.+.++..++|..+|+|++++|+.+|+++
T Consensus 154 ~~p~~~~~iid~v~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~~~~~ 230 (686)
T TIGR03797 154 LVPIATGILIGTAIPDAD---RSLLVQIALALLAAAVGAAAFQLAQSLAVLRLETRMDASLQAAVWDRLLRLPVSFFRQY 230 (686)
T ss_pred HHHHHHHHHHHHhhhcCC---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCC
Confidence 999999999999875433 23445555666667777888999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 176 KTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLALISLIIVPPVAGLAIVYGKFVRKITRNVQDK 255 (644)
Q Consensus 176 ~~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~ 255 (644)
++|++++|++ |++.++++++..+...+.+.+.+++.++++++++|++++++++++++++++..++.++.++..++..+.
T Consensus 231 ~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (686)
T TIGR03797 231 STGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWKLALVAVALALVAIAVTLVLGLLQVRKERRLLEL 309 (686)
T ss_pred ChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998 789999999998889888988888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHchHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Q psy5743 256 LANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAKGVFFGFTGLSGNAIILSVLYYGGVMVSYETI 335 (644)
Q Consensus 256 ~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~~ 335 (644)
.++.++.+.|.++|+++||++|.|+.+.++|.+..++..+...+..+.......+..++..+..++++++|++++.+|.+
T Consensus 310 ~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~l 389 (686)
T TIGR03797 310 SGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLTVFNAVLPVLTSAALFAAAISLLGGAGL 389 (686)
T ss_pred HHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999998888888877777777778888899999999999999
Q ss_pred CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCCCCccCCCCCccEEEEEEEEEcCCCCCC
Q psy5743 336 TVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMEREPLISTSGGKFFSHSLKGEIDFNNIRFSYPSRPDA 415 (644)
Q Consensus 336 t~g~l~a~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~Rl~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~ 415 (644)
|+|.++++..+...+..|+..+...+..++++..+.+|+.++++.+++..... . ...+..+.|+++||+|+|+++ ++
T Consensus 390 tiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~-~-~~~~~~~~I~~~nvsf~Y~~~-~~ 466 (686)
T TIGR03797 390 SLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVDEAK-T-DPGKLSGAIEVDRVTFRYRPD-GP 466 (686)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCc-C-CCCCCCceEEEEEEEEEcCCC-Cc
Confidence 99999999999999999999999999999999999999999998765532211 1 111234579999999999753 57
Q ss_pred ccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHH
Q psy5743 416 VILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYEN 495 (644)
Q Consensus 416 ~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreN 495 (644)
++|+|+||+|+|||++||||+||||||||+|+|+|+|+|++|+|++||+|+++++++++|++|+||||||++|+||||||
T Consensus 467 ~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eN 546 (686)
T TIGR03797 467 LILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFEN 546 (686)
T ss_pred cceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHH
Q psy5743 496 ILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAE 575 (644)
Q Consensus 496 I~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~ 575 (644)
|++|+| ++++++++|++.++++++|+++|+||||+|||+|.+|||||||||+||||++++|+|||||||||+||++
T Consensus 547 i~~~~~----~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~ 622 (686)
T TIGR03797 547 IAGGAP----LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNR 622 (686)
T ss_pred HhcCCC----CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHH
Confidence 999965 7899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEecChhHHhcCCCcHHHHHHHhhc
Q psy5743 576 NEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLMKYQT 642 (644)
Q Consensus 576 ~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eLl~~~~~~y~~l~~~q~ 642 (644)
+|+.|.+.|++. ++|+|+||||+++++.||+|+||++|+|+|.|+|+||+++ +|.|+++++.|+
T Consensus 623 te~~i~~~L~~~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll~~-~~~y~~l~~~q~ 686 (686)
T TIGR03797 623 TQAIVSESLERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMAR-EGLFAQLARRQL 686 (686)
T ss_pred HHHHHHHHHHHh--CCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHHHhC-CcHHHHHHHhcC
Confidence 999999999887 6899999999999999999999999999999999999987 799999999774
No 8
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=2.1e-102 Score=899.69 Aligned_cols=594 Identities=25% Similarity=0.385 Sum_probs=531.9
Q ss_pred ccccccccc--hhccchhhhhhhcccC-----CCCCccccccc---chHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q psy5743 26 IISHKPFSK--WKLQNNEKIISRYYTS-----TPNNQKVGTKI---KKSELKKLFTLAKSEKRKLTGAVCLLLVSSSITM 95 (644)
Q Consensus 26 ~~~~~~~~~--~~~~~~~~~~~~~~~~-----~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~ 95 (644)
++++||+.| .+..+. ++...++++ .|...+...+. +...+++++.+++++|+.+...++++++.+++.+
T Consensus 86 ~~i~DP~~g~~~~~~~~-~e~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 164 (694)
T TIGR03375 86 ARVLLPETGDGEQELSL-DALEALYSGYAIFVRPQFRFDARADELISPRPKHWFWSTLKESWPLYRDVLIASLLINLLAL 164 (694)
T ss_pred EEEEccCCCCCceEecH-HHHHhhcCCeEEEEecccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999998 554444 566666555 34333322111 2345678889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhcc
Q psy5743 96 AVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVYLMNVSAQSITKKLRERLFGSIISQETAYFDKH 175 (644)
Q Consensus 96 ~~p~~~~~~id~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~ 175 (644)
+.|++++.++|.+...... ..+..++++++++.++..++.+++.++..+.+.++..++|..+|+|++++|+.+ +++
T Consensus 165 ~~p~~~~~iiD~~~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~-~~~ 240 (694)
T TIGR03375 165 ASPLFVMNVYDRVVPNQAF---ETLWVLAIGVALAIVFDFVLKTLRSYFLDVAGKKADLILSAKLFERVLGLRMEA-RPA 240 (694)
T ss_pred HHHHHHHHHHHHhhhcCcH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc-CCC
Confidence 9999999999988754331 233344445555566778889999999999999999999999999999999998 789
Q ss_pred ChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 176 KTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLALISLIIVPPVAGLAIVYGKFVRKITRNVQDK 255 (644)
Q Consensus 176 ~~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~ 255 (644)
++|++++|+ +|++.++++++..+...+.+++++++.++++++++|++++++++++|+++++..++.++.++..++..+.
T Consensus 241 ~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~ 319 (694)
T TIGR03375 241 SVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIGGPLVWVPLVAIPLILLPGLLLQRPLSRLAEESMRE 319 (694)
T ss_pred ChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999 6999999999998889999998888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHchHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Q psy5743 256 LANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAKGVFFGFTGLSGNAIILSVLYYGGVMVSYETI 335 (644)
Q Consensus 256 ~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~~ 335 (644)
.++..+.+.|.++|+++||.+++|+.+.++|.+..++..+...+..+.......+..++..+..++++++|++++.+|.+
T Consensus 320 ~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g~~~v~~g~l 399 (694)
T TIGR03375 320 SAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSNLATNFAQFIQQLVSVAIVVVGVYLISDGEL 399 (694)
T ss_pred HHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999888888888887777777777888889999999999999
Q ss_pred CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCCCCccCCCCCccEEEEEEEEEcCCCCCC
Q psy5743 336 TVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMEREPLISTSGGKFFSHSLKGEIDFNNIRFSYPSRPDA 415 (644)
Q Consensus 336 t~g~l~a~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~Rl~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~ 415 (644)
|+|.++++..+...+..|+..+...+.+++.+..+.+|+.++++.+++.+.........+..+.|+++||+|+|++ .++
T Consensus 400 s~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~I~~~~vsf~Y~~-~~~ 478 (694)
T TIGR03375 400 TMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEGTRFLHRPRLQGEIEFRNVSFAYPG-QET 478 (694)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCccceEEEEEEEEEeCC-CCc
Confidence 9999999999999999999999999999999999999999999877653322111111223467999999999985 356
Q ss_pred ccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHH
Q psy5743 416 VILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYEN 495 (644)
Q Consensus 416 ~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreN 495 (644)
++|+|+||+|+|||++||||+||||||||+|+|+|+|+|++|+|++||+|+++++++++|++|+||||||++|+|||+||
T Consensus 479 ~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eN 558 (694)
T TIGR03375 479 PALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDN 558 (694)
T ss_pred cceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHH
Q psy5743 496 ILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAE 575 (644)
Q Consensus 496 I~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~ 575 (644)
|++++|+ +++++++++++.++++++|++||+||||.|||+|.+|||||||||+||||++++|+|+|||||||+||++
T Consensus 559 i~~~~~~---~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~ 635 (694)
T TIGR03375 559 IALGAPY---ADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNR 635 (694)
T ss_pred HhCCCCC---CCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Confidence 9999886 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEecChhHHhcC
Q psy5743 576 NEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKN 629 (644)
Q Consensus 576 ~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eLl~~ 629 (644)
+|+.|+++|.+..+++|+|+||||+++++.||+|++|++|+++|.|+|+||+++
T Consensus 636 te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 636 SEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred HHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHHHHH
Confidence 999999999999899999999999999999999999999999999999999874
No 9
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=3.9e-101 Score=887.82 Aligned_cols=567 Identities=40% Similarity=0.633 Sum_probs=513.4
Q ss_pred chHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 62 KKSELKKLFTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGR 141 (644)
Q Consensus 62 ~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 141 (644)
....+++++++++++|+.+..++++.++.+++.++.|++++.++|.+....+. ..+....++++++.++..++.+++
T Consensus 145 ~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~ 221 (711)
T TIGR00958 145 TADLLFRLLGLSGRDWPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGP---PALASAIFFMCLLSIASSVSAGLR 221 (711)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567789999999999999999999999999999999999999988744321 122223334444556667788889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 142 VYLMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISS 221 (644)
Q Consensus 142 ~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~ 221 (644)
.+.....+.++..++|..+|++++++|+++|++.++|++++|+++|++.+++++...+..++.+++.+++.++++++++|
T Consensus 222 ~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~ 301 (711)
T TIGR00958 222 GGSFNYTMARINLRIREDLFRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSP 301 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 222 KLALISLIIVPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEA 301 (644)
Q Consensus 222 ~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 301 (644)
++++++++.+|+++++..++.++.++..++.++..++.++.+.|.++|+++||.|++|+.+.++|.+..++..+...+..
T Consensus 302 ~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 381 (711)
T TIGR00958 302 RLTMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKA 381 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy5743 302 LAKGVFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMERE 381 (644)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~~t~g~l~a~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~Rl~~~l~~~ 381 (644)
+..........++..+..++++++|++++.+|.+|+|.++++..|...+..|+..+++.+.+++++..+.+|+.++++.+
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~ 461 (711)
T TIGR00958 382 LAYAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRK 461 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 76666666666666677778889999999999999999999999999999999999999999999999999999999876
Q ss_pred CCccCCCCCccCCCCCccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEE
Q psy5743 382 PLISTSGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILI 461 (644)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i 461 (644)
++.++.....+ .+..+.|+++||+|+||+++++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++
T Consensus 462 ~~~~~~~~~~~-~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i 540 (711)
T TIGR00958 462 PNIPLTGTLAP-LNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLL 540 (711)
T ss_pred CCCCCCCCCCC-CCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEE
Confidence 65332221111 22346799999999998654578999999999999999999999999999999999999999999999
Q ss_pred CCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCC
Q psy5743 462 DGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIM 541 (644)
Q Consensus 462 dg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~ 541 (644)
||+|+++++.+++|++|+||||||++|+|||||||++|.|+ .+||+++++++.++++++++++|+||||.+||+|.+
T Consensus 541 dg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~---~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~ 617 (711)
T TIGR00958 541 DGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTD---TPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQ 617 (711)
T ss_pred CCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCC---CCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCc
Confidence 99999999999999999999999999999999999999876 789999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEec
Q psy5743 542 LSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIG 621 (644)
Q Consensus 542 LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~G 621 (644)
|||||||||+||||++++|+||||||||||||+++|+.+.+ . ...+++|+|+||||+++++.||+|++|++|+|+|.|
T Consensus 618 LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~-~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~G 695 (711)
T TIGR00958 618 LSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-S-RSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMG 695 (711)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-h-hccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEee
Confidence 99999999999999999999999999999999999999999 3 345789999999999999999999999999999999
Q ss_pred ChhHHhcCCCcHHHHHH
Q psy5743 622 SYAHLIKNPNSMFNKLM 638 (644)
Q Consensus 622 t~~eLl~~~~~~y~~l~ 638 (644)
+|+||+++ +|.|++|+
T Consensus 696 t~~eL~~~-~~~y~~lv 711 (711)
T TIGR00958 696 THKQLMED-QGCYKHLV 711 (711)
T ss_pred CHHHHHhC-CCchHhcC
Confidence 99999987 68998874
No 10
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=6.9e-101 Score=868.08 Aligned_cols=563 Identities=39% Similarity=0.610 Sum_probs=511.8
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 66 LKKLFTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVYLM 145 (644)
Q Consensus 66 ~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (644)
+++++.+.+ ++ .+..++++.++..++....|++++.++|.+... ......+..+++++.++..+..+...+..
T Consensus 4 ~~~l~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 76 (567)
T COG1132 4 LRRLLKYLK-YK-LLLLAILLLLLSALLSLLLPLLIGRIIDALLAD-----LGELLELLLLLLLLALLGGVLRALQSYLG 76 (567)
T ss_pred HHHHHHHHH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666 77 888889999999999999999999999988711 12233333444455556677788888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 146 NVSAQSITKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLAL 225 (644)
Q Consensus 146 ~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l 225 (644)
...+.++..++|..+|++++++|+++|++.++|++++|+++|++.++.++......+..+++.+++.+++++..+|.+++
T Consensus 77 ~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l 156 (567)
T COG1132 77 SRLGQKIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLAL 156 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHhCcCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 88889999999999999999999999999999999999999999999998887555555678888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 226 ISLIIVPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAKG 305 (644)
Q Consensus 226 i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (644)
++++..|++.+...++.++.++..++.++..++.++.+.|.++|++++|+|+.++...+++.+..++..+...+......
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (567)
T COG1132 157 ILLLILPLLALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEA 236 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888888888999999999999999999999999999999999999999999999888888877777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Q psy5743 306 VFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMEREPLIS 385 (644)
Q Consensus 306 ~~~~~~~~~~~~~~~~vl~~g~~~v~~g~~t~g~l~a~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~Rl~~~l~~~~~~~ 385 (644)
.......++..+....++++|++.+..+.+++|.+++++.+...+..|+..+...+..++.+..+.+|+.++++.+++..
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~ 316 (567)
T COG1132 237 LLAPLMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVE 316 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccc
Confidence 77777788888888999999999999999999999999999999999999999999999999999999999999876533
Q ss_pred CCCCCccCCCCCccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCcc
Q psy5743 386 TSGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVD 465 (644)
Q Consensus 386 ~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~ 465 (644)
+.... .....++|+|+||+|+|++ ++++|+|+||+++|||++|||||||||||||+++|+|+|+|++|+|++||+|
T Consensus 317 ~~~~~--~~~~~~~I~f~~vsf~y~~--~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~d 392 (567)
T COG1132 317 DPPDP--LKDTIGSIEFENVSFSYPG--KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGID 392 (567)
T ss_pred CCCCC--CCCCCCeEEEEEEEEEcCC--CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEe
Confidence 32221 1234467999999999984 4689999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChh
Q psy5743 466 IKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGG 545 (644)
Q Consensus 466 i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGG 545 (644)
+++++.++||++|++|||||+||+|||+|||++|+|+ +++||+++||+.++++|||+++|+||||+|||+|.+||||
T Consensus 393 I~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~---at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgG 469 (567)
T COG1132 393 IRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPD---ATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGG 469 (567)
T ss_pred hhhcCHHHHHHhccEEcccceeecccHHHHHhcCCCC---CCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHH
Confidence 9999999999999999999999999999999999987 8999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEecChhH
Q psy5743 546 QKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAH 625 (644)
Q Consensus 546 QkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~e 625 (644)
|||||+||||++|||||||||||||+||++||+.|++++.++.++||+|+||||++++++||+|+|||+|+|+|.|+|+|
T Consensus 470 QrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~e 549 (567)
T COG1132 470 QRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEE 549 (567)
T ss_pred HHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHH
Confidence 99999999999999999999999999999999999999998888999999999999999999999999999999999999
Q ss_pred HhcCCCcHHHHHHHhhcC
Q psy5743 626 LIKNPNSMFNKLMKYQTM 643 (644)
Q Consensus 626 Ll~~~~~~y~~l~~~q~~ 643 (644)
|+++ +|.|++||+.|..
T Consensus 550 Ll~~-~g~y~~l~~~~~~ 566 (567)
T COG1132 550 LLAK-GGLYARLYQAQGG 566 (567)
T ss_pred HHHc-CCHHHHHHHHhhc
Confidence 9997 8999999998864
No 11
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=4.4e-100 Score=879.78 Aligned_cols=607 Identities=28% Similarity=0.434 Sum_probs=544.4
Q ss_pred cccccccccccc-hhccchhhhhhhcccC-----CCCCcccccccchHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q psy5743 23 AFKIISHKPFSK-WKLQNNEKIISRYYTS-----TPNNQKVGTKIKKSELKKLFTLAKSEKRKLTGAVCLLLVSSSITMA 96 (644)
Q Consensus 23 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~ 96 (644)
-.+++++||+.| .+..+. ++...++++ .|.. +.+ +.+...+++++.+++++++.+...++++++.+++.++
T Consensus 81 ~~~~~i~Dp~~g~~~~i~~-~e~~~~~~g~~l~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ll~l~ 157 (694)
T TIGR01846 81 ANGVTIYDPPGDAPEVLSR-EVLEALWSGTVILLATRS-VAG-KALKFGFSWFIPAIIRYRKQFREVLLISLALQLFALV 157 (694)
T ss_pred CCEEEEEcCCCCCceeeCH-HHHHhhCCCeEEEEecCc-ccc-ccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346889999988 543344 566655555 3443 222 2223457788888999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccC
Q psy5743 97 VPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVYLMNVSAQSITKKLRERLFGSIISQETAYFDKHK 176 (644)
Q Consensus 97 ~p~~~~~~id~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~ 176 (644)
.|++++.++|.++...+ ...+..++++++++.++..++.+++.++..+.+.++..++|..+|+|++++|+++|++++
T Consensus 158 ~p~~~~~iid~v~~~~~---~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~f~~~~ 234 (694)
T TIGR01846 158 TPLLFQVVIDKVLVHRG---LSTLSVLALAMLAVAIFEPALGGLRTYLFAHLTSRIDVELGARLYRHLLGLPLGYFESRR 234 (694)
T ss_pred HHHHHHHHHHHhhccCC---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHcCCCC
Confidence 99999999999875433 233444555566666778889999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 177 TGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLALISLIIVPPVAGLAIVYGKFVRKITRNVQDKL 256 (644)
Q Consensus 177 ~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 256 (644)
+|++++|+ +|++.++++++..+...+.+++++++.++++++++|++++++++++++++++..++.++.++..++..+..
T Consensus 235 ~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 313 (694)
T TIGR01846 235 VGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTGVVIGSLVCYALLSVFVGPILRKRVEDKFERS 313 (694)
T ss_pred HHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999 59999999999999998888888888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHchHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcC
Q psy5743 257 ANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAKGVFFGFTGLSGNAIILSVLYYGGVMVSYETIT 336 (644)
Q Consensus 257 ~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~~t 336 (644)
++.++.+.|.++|+++||++|.|+.+.++|.+..++..+...+..+.......+..++..+..++++++|++++.+|.+|
T Consensus 314 ~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~it 393 (694)
T TIGR01846 314 AAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIAGQAIELIQKLTFAILLWFGAHLVIGGALS 393 (694)
T ss_pred HHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999998888888888777777777788888999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCCCCccCCCCCccEEEEEEEEEcCCCCCCc
Q psy5743 337 VGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMEREPLISTSGGKFFSHSLKGEIDFNNIRFSYPSRPDAV 416 (644)
Q Consensus 337 ~g~l~a~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~Rl~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~ 416 (644)
+|.++++..+...+..|+..+...+..++++..+.+|+.++++.+++..... ....+...+.|+++||+|+|+++ +++
T Consensus 394 ~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~-~~~~~~~~~~i~~~~vsf~y~~~-~~~ 471 (694)
T TIGR01846 394 PGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSAG-LAALPELRGAITFENIRFRYAPD-SPE 471 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCCC-CCCCCCCCCeEEEEEEEEEcCCC-Ccc
Confidence 9999999999999999999999999999999999999999998766532211 11112234679999999999753 467
Q ss_pred cccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHH
Q psy5743 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENI 496 (644)
Q Consensus 417 vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI 496 (644)
+|+|+||+|+|||++||||+||||||||+|+|+|+|+|++|+|++||+|+++++.+++|++|+||||||++|+|||+|||
T Consensus 472 il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi 551 (694)
T TIGR01846 472 VLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNI 551 (694)
T ss_pred ccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHH
Q psy5743 497 LYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAEN 576 (644)
Q Consensus 497 ~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~ 576 (644)
++++|+ +++++++++++.++++++++++|+||||.+||+|.+|||||||||+||||++++|+|||||||||+||+++
T Consensus 552 ~~~~~~---~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~ 628 (694)
T TIGR01846 552 ALCNPG---APFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYES 628 (694)
T ss_pred hcCCCC---CCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHH
Confidence 999876 89999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEecChhHHhcCCCcHHHHHHHhhc
Q psy5743 577 EYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLMKYQT 642 (644)
Q Consensus 577 e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eLl~~~~~~y~~l~~~q~ 642 (644)
|+.+.+.|++..+++|+|+||||+++++.||+|++|++|+|+|.|+|+||+++ +|.|+++++.|.
T Consensus 629 ~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l~~~-~~~y~~l~~~~~ 693 (694)
T TIGR01846 629 EALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLAL-QGLYARLWQQQS 693 (694)
T ss_pred HHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHHHHc-CChHHHHHHhhc
Confidence 99999999998889999999999999999999999999999999999999987 699999999774
No 12
>KOG0055|consensus
Probab=100.00 E-value=3.5e-101 Score=875.40 Aligned_cols=573 Identities=38% Similarity=0.584 Sum_probs=519.3
Q ss_pred HHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 66 LKKLFTLAKS-EKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVYL 144 (644)
Q Consensus 66 ~~~l~~~~~~-~~~~l~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 144 (644)
+..++.+... .+..+..+.+.+++..+...++.++.+.++|.+.............-+.+.++.+.+...+..+++...
T Consensus 15 ~~~lf~~a~~~D~~Lm~~G~i~a~~~G~~~P~~~ii~g~~~~~~~~~~~~~~~~~~~~~~l~~~~lg~~~~~~~~~q~~c 94 (1228)
T KOG0055|consen 15 FFKLFRFADRFDYLLMILGSIGAIAHGLGLPLMSIIFGKLTDVLGDNTNKIASSEVSKVALYFVYLGVGVFISGFIQVSC 94 (1228)
T ss_pred hHHheeccchhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445554433 344455666777777777777888889999988654421212234445555666666667788889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 145 MNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLA 224 (644)
Q Consensus 145 ~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~ 224 (644)
....+.+...++|+.+++.+++++..|||.+.+|++.+|+++|++.+++.+..-+..++..+.+++..+++.|++.|+++
T Consensus 95 ~~~~geRq~~riR~~yl~~iLrQdi~~fD~~~~g~~~~~l~~d~~~I~d~~geKvg~~i~~~~~fi~g~ii~F~~~W~Lt 174 (1228)
T KOG0055|consen 95 WMRTGERQTARIRSKYLKAILRQDIGWFDTNSTGELVTRLSDDIELIQDAIGEKVGNFIQLLATFIAGFVIGFYYGWKLT 174 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCccceeecccccceEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 225 LISLIIVPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAK 304 (644)
Q Consensus 225 li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (644)
++++.+.|++++....+.+.+.+..++.+++.++..+.+.|++.++||+.+|+-|+.+.++|.+..+...+...+...+.
T Consensus 175 lv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~L~~~~k~gi~~g~~~ 254 (1228)
T KOG0055|consen 175 LVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALENALKFGIKKGLFK 254 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q psy5743 305 GVFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMEREPLI 384 (644)
Q Consensus 305 ~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~~t~g~l~a~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~Rl~~~l~~~~~~ 384 (644)
++..+...++........+|+|+.++.++..+.|.++..+..+..-...+.+....+..+..+.++..+|++.++..|..
T Consensus 255 G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I~~~i~~~~~i 334 (1228)
T KOG0055|consen 255 GLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRIFETIDRKPSI 334 (1228)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHHHHHhcCCCCC
Confidence 99999888888888899999999999999999999888777777677778888888899999999999999999987765
Q ss_pred cCCC-CCccCCCCCccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECC
Q psy5743 385 STSG-GKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDG 463 (644)
Q Consensus 385 ~~~~-~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg 463 (644)
.... +........+.|+|+||+|+||.+++.++|+|+||+||+||+|||||||||||||+++||.|+|+|++|+|+|||
T Consensus 335 ~~~~~~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG 414 (1228)
T KOG0055|consen 335 DPYSKGGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDG 414 (1228)
T ss_pred CcccccCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcC
Confidence 4322 122233466889999999999999888999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCC
Q psy5743 464 VDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLS 543 (644)
Q Consensus 464 ~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LS 543 (644)
.|+++++.+++|++||.|.|+|.||++||+|||+||+|| ++++++.+||+.++.++||.+||+||||.+||+|.+||
T Consensus 415 ~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~d---at~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLS 491 (1228)
T KOG0055|consen 415 EDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPD---ATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLS 491 (1228)
T ss_pred ccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCc---ccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCC
Confidence 999999999999999999999999999999999999998 99999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEecCh
Q psy5743 544 GGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSY 623 (644)
Q Consensus 544 GGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~ 623 (644)
|||||||||||||+|||+||||||||||||+++|+.|+++|++..++||+|+|||||||+++||+|+||++|+|+|.|+|
T Consensus 492 GGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrnaD~I~v~~~G~IvE~G~h 571 (1228)
T KOG0055|consen 492 GGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRNADKIAVMEEGKIVEQGTH 571 (1228)
T ss_pred hHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhccCEEEEEECCEEEEecCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhcCCCcHHHHHHHhhc
Q psy5743 624 AHLIKNPNSMFNKLMKYQT 642 (644)
Q Consensus 624 ~eLl~~~~~~y~~l~~~q~ 642 (644)
+||++. +|.|++|++.|.
T Consensus 572 ~ELi~~-~G~Y~~lv~~Q~ 589 (1228)
T KOG0055|consen 572 DELIAL-GGIYSSLVRLQE 589 (1228)
T ss_pred HHHHhc-cchHHHHHHHHh
Confidence 999998 499999999884
No 13
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=1.5e-98 Score=852.95 Aligned_cols=570 Identities=31% Similarity=0.498 Sum_probs=516.7
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 65 ELKKLFTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVYL 144 (644)
Q Consensus 65 ~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 144 (644)
.+++++++++++++.++..+++.++..++..+.|++++.++|.+...... ..+..+.++++++.++..++.+++.+.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~ 88 (582)
T PRK11176 12 TFRRLWPTIAPFKAGLIVAGVALILNAASDTFMLSLLKPLLDDGFGKADR---SVLKWMPLVVIGLMILRGITSFISSYC 88 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCch---hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888889999988888888888888888999999999987753321 122233333444566677888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 145 MNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLA 224 (644)
Q Consensus 145 ~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~ 224 (644)
..+.+.++..++|..+|++++++|+++|+++++|++++|+++|++.+++++...+..++.+++++++.++++++++|+++
T Consensus 89 ~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 168 (582)
T PRK11176 89 ISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLS 168 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 225 LISLIIVPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAK 304 (644)
Q Consensus 225 li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (644)
+++++++|+++++..++.++.++..++..+..++..+.+.|.++|+++||++|.|+.+.++|.+..++..+...+..+..
T Consensus 169 l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (582)
T PRK11176 169 LILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSAS 248 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999889888888899999999999999999999999999999999999999999999999999999999988888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q psy5743 305 GVFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMEREPLI 384 (644)
Q Consensus 305 ~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~~t~g~l~a~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~Rl~~~l~~~~~~ 384 (644)
.....+..++..+..++++++|++.+.+|.+|+|+++++..+...+..|+..+.+.+..++.+..+.+|+.++++.+++.
T Consensus 249 ~~~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~ 328 (582)
T PRK11176 249 SISDPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEK 328 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcC
Confidence 87777777777777888889999999999999999999999999999999999999999999999999999999866542
Q ss_pred cCCCCCccCCCCCccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCc
Q psy5743 385 STSGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGV 464 (644)
Q Consensus 385 ~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~ 464 (644)
+..... .++..+.|+++||+|+|+++ ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||+
T Consensus 329 ~~~~~~--~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~ 405 (582)
T PRK11176 329 DEGKRV--IERAKGDIEFRNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGH 405 (582)
T ss_pred CCCCcC--CCCCCCeEEEEEEEEecCCC-CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCE
Confidence 221111 12233579999999999853 468999999999999999999999999999999999999999999999999
Q ss_pred cCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCCh
Q psy5743 465 DIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSG 544 (644)
Q Consensus 465 ~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSG 544 (644)
|+++++.+++|++|+||||||++|+|||||||++|+|+ .++|++++++++.++++++++++|+||||.+||+|.+|||
T Consensus 406 ~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~--~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSG 483 (582)
T PRK11176 406 DLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTE--QYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSG 483 (582)
T ss_pred EhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCC--CCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCH
Confidence 99999999999999999999999999999999999764 3799999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEecChh
Q psy5743 545 GQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYA 624 (644)
Q Consensus 545 GQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~ 624 (644)
||||||+||||++++|+||||||||||||+++|+.+.+.|.+..+++|+|+||||+++++.||+|++|++|+|+|.|+|+
T Consensus 484 GqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~ 563 (582)
T PRK11176 484 GQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHA 563 (582)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred HHhcCCCcHHHHHHHhhcC
Q psy5743 625 HLIKNPNSMFNKLMKYQTM 643 (644)
Q Consensus 625 eLl~~~~~~y~~l~~~q~~ 643 (644)
+|+++ ++.|+++++.|..
T Consensus 564 ~l~~~-~~~y~~l~~~~~~ 581 (582)
T PRK11176 564 ELLAQ-NGVYAQLHKMQFG 581 (582)
T ss_pred HHHhC-CChHHHHHHHHhc
Confidence 99987 6899999998753
No 14
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-98 Score=797.77 Aligned_cols=552 Identities=28% Similarity=0.401 Sum_probs=510.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 81 TGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVYLMNVSAQSITKKLRERL 160 (644)
Q Consensus 81 ~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~ 160 (644)
....++.+++.+..+.+.+++...++.++.... ...+..+++.++++++++.++.+.+..+..+.+.++...+|..+
T Consensus 3 ~i~~ll~~l~~i~~i~qa~llA~~l~~l~~~~~---~~~l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~ 79 (559)
T COG4988 3 VISALLAVLSGIAIIAQAALLADILTKLIEGQL---FQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLV 79 (559)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677788888888889999999988876542 23455566777888899999999999999999999999999999
Q ss_pred HHHHHcCChhhhhccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 161 FGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLALISLIIVPPVAGLAIV 240 (644)
Q Consensus 161 ~~~ll~~~~~~~~~~~~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~l~~~~~~~ 240 (644)
++|+.++++.+-.+.++|++.+.+...++.++.++..++++...+.+..++.++.+++++|..++|.++++|++.+++.+
T Consensus 80 l~~l~~~gp~~~~~~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMil 159 (559)
T COG4988 80 LDKLAKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMIL 159 (559)
T ss_pred HHHHHhCChhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 241 YGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAKGVFFGFTGLSGNAIIL 320 (644)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (644)
++++.++..+++.....++++++.|.++|+.|+|.||..+...++..+..++.++..++..+...+...+..++..+.++
T Consensus 160 vg~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiA 239 (559)
T COG4988 160 VGLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIA 239 (559)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998888887788888888888887
Q ss_pred HHHHHHHHHHHc-CCcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCCCC-ccCCCCCc
Q psy5743 321 SVLYYGGVMVSY-ETITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMEREPLISTSGGK-FFSHSLKG 398 (644)
Q Consensus 321 ~vl~~g~~~v~~-g~~t~g~l~a~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~Rl~~~l~~~~~~~~~~~~-~~~~~~~~ 398 (644)
++..+.+..... |.+++...+.++.+...++.|++.++..++.-+.+..+.+.+..+++.|++.++...+ ...+..+-
T Consensus 240 lvAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~~~ 319 (559)
T COG4988 240 LVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEPPI 319 (559)
T ss_pred HHHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccccccccCCCc
Confidence 777777777777 8999999999999999999999999999999999999999999999987764443322 11222233
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
.|+++|++|.||+. +++++|+||+++||+++||||+||||||||+++|+|+++|++|+|.+||+|+++++.++||+++
T Consensus 320 ei~~~~l~~~y~~g--~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i 397 (559)
T COG4988 320 EISLENLSFRYPDG--KPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQI 397 (559)
T ss_pred eeeecceEEecCCC--CcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHe
Confidence 45666999999863 3899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHcc
Q psy5743 479 GSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIK 558 (644)
Q Consensus 479 ~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~ 558 (644)
+||+|+|+||+|||||||++++|+ .+||+++++++.+++.||+.. |+|+||+|||+|.+|||||+||++|||||++
T Consensus 398 ~~v~Q~p~lf~gTireNi~l~~~~---~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~ 473 (559)
T COG4988 398 SWVSQNPYLFAGTIRENILLARPD---ASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLS 473 (559)
T ss_pred eeeCCCCccccccHHHHhhccCCc---CCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcC
Confidence 999999999999999999999987 899999999999999999999 9999999999999999999999999999999
Q ss_pred CCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEecChhHHhcCCCcHHHHHH
Q psy5743 559 KSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLM 638 (644)
Q Consensus 559 ~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eLl~~~~~~y~~l~ 638 (644)
++++++||||||+||.|||+.|.+.|.++.+++|+|+||||++.+++||+|+|||+|+++|+|+|+||.++ +|.|++|+
T Consensus 474 ~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~-~~~y~~l~ 552 (559)
T COG4988 474 PASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEK-QGLYANLL 552 (559)
T ss_pred CCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhhc-CcHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987 79999999
Q ss_pred Hhhc
Q psy5743 639 KYQT 642 (644)
Q Consensus 639 ~~q~ 642 (644)
+.|.
T Consensus 553 ~~q~ 556 (559)
T COG4988 553 KQQE 556 (559)
T ss_pred HHHh
Confidence 9875
No 15
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=8.4e-99 Score=913.65 Aligned_cols=569 Identities=29% Similarity=0.451 Sum_probs=494.1
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 65 ELKKLFTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVYL 144 (644)
Q Consensus 65 ~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 144 (644)
.++++++.++++++.++++++++++..++.++.|++++.++|.++... ........++++++++.++..++.+++.|+
T Consensus 812 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~l~~~~~~i~~~~~~~l~~~~ 889 (1466)
T PTZ00265 812 NLRIVYREIFSYKKDVTIIALSILVAGGLYPVFALLYAKYVSTLFDFA--NLEANSNKYSLYILVIAIAMFISETLKNYY 889 (1466)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677788889888999999999999999999999999999776421 111223334555666667777889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCChhhhhc--cChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 145 MNVSAQSITKKLRERLFGSIISQETAYFDK--HKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSK 222 (644)
Q Consensus 145 ~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~--~~~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~ 222 (644)
..++++++..++|..+|++++++|+.||++ +++|++++|+++|++.+++++...+..++..++.+++.++++++++|.
T Consensus 890 ~~~~~~~~~~~lR~~lf~~ll~~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~~ 969 (1466)
T PTZ00265 890 NNVIGEKVEKTMKRRLFENILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPI 969 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999986 889999999999999999999988888888888888888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-----------------HHHHHHHHHHHHHHHHchHHHHHHcCchHHHHH
Q psy5743 223 LALISLIIVPPVAGLAIVYGKFVRKIT-RN-----------------VQDKLANAVQVAEERISNIRTVKSFSQEKLEMS 284 (644)
Q Consensus 223 l~li~l~~~~l~~~~~~~~~~~~~~~~-~~-----------------~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~ 284 (644)
++++++++ ++++...+.++.+... ++ ..+..++....+.|.++|+++||+|+.|+++.+
T Consensus 970 l~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~ 1046 (1466)
T PTZ00265 970 VAAVLTGT---YFIFMRVFAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCN 1046 (1466)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHH
Confidence 88776533 3333444444333211 11 123355678899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 285 HFNAKMDDLFELAKKEALAKGVFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSEL 364 (644)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~~t~g~l~a~~~~~~~~~~~l~~l~~~~~~~ 364 (644)
+|.+..++..+...+.....+...++..++..+..++++|+|++++..|.+|+|.+++++.++.....++..+...+.++
T Consensus 1047 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~ 1126 (1466)
T PTZ00265 1047 LIEKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDS 1126 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888888888888888888888777888899999999999999999999998877766667888999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCccCC-CCCcc---CCCCCccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCc
Q psy5743 365 NKGLGACHRLWEIMEREPLISTS-GGKFF---SHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSG 440 (644)
Q Consensus 365 ~~~~~s~~Rl~~~l~~~~~~~~~-~~~~~---~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsG 440 (644)
+++..+.+|+.++++.+++.+.. ..... .....+.|+|+||+|+||++++.+||+|+||+|+||++||||||||||
T Consensus 1127 ~~a~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsG 1206 (1466)
T PTZ00265 1127 ENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSG 1206 (1466)
T ss_pred HHHHHHHHHHHHHHCCCCcCCCCCCcccccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCC
Confidence 99999999999999876543211 11111 112346799999999998655568999999999999999999999999
Q ss_pred HHHHHHHHhccCCC------------------------------------------------------CCcEEEECCccC
Q psy5743 441 KSTLAMLLLRLYDP------------------------------------------------------QNGKILIDGVDI 466 (644)
Q Consensus 441 KSTLl~lL~g~~~p------------------------------------------------------~~G~I~idg~~i 466 (644)
||||++||+|+|+| ++|+|++||+|+
T Consensus 1207 KSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di 1286 (1466)
T PTZ00265 1207 KSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDI 1286 (1466)
T ss_pred HHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEH
Confidence 99999999999999 699999999999
Q ss_pred CCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhH
Q psy5743 467 KELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQ 546 (644)
Q Consensus 467 ~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQ 546 (644)
++++.++||++||||||+|+||+|||||||+||+|+ ++++++++||+.|+++|||++||+||||.|||+|.+|||||
T Consensus 1287 ~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~---at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQ 1363 (1466)
T PTZ00265 1287 CDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKED---ATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQ 1363 (1466)
T ss_pred HhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCC---CCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHH
Confidence 999999999999999999999999999999999886 89999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc--CCceEEEEccCchHHhhcCEEEEEeC----CeEE-E
Q psy5743 547 KQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI--EGKTVLTIAHRLSTIRKSNQICVLDK----GKIV-E 619 (644)
Q Consensus 547 kQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~--~~~TvI~IaHrl~~i~~aD~Iivl~~----G~iv-e 619 (644)
||||||||||+|+|+||||||||||||+++|+.|+++|.+.. +++|+|+||||++++++||+|+||++ |+++ |
T Consensus 1364 kQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e 1443 (1466)
T PTZ00265 1364 KQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQA 1443 (1466)
T ss_pred HHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEE
Confidence 999999999999999999999999999999999999999984 68999999999999999999999999 9955 8
Q ss_pred ecChhHHhcCCCcHHHHHHHhh
Q psy5743 620 IGSYAHLIKNPNSMFNKLMKYQ 641 (644)
Q Consensus 620 ~Gt~~eLl~~~~~~y~~l~~~q 641 (644)
+|||+||+++++|.|++|++.|
T Consensus 1444 ~Gth~eLl~~~~g~Y~~l~~~~ 1465 (1466)
T PTZ00265 1444 HGTHEELLSVQDGVYKKYVKLA 1465 (1466)
T ss_pred ecCHHHHHhcCCChHHHHHhhc
Confidence 9999999974379999999987
No 16
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=3.4e-98 Score=845.07 Aligned_cols=567 Identities=23% Similarity=0.336 Sum_probs=503.8
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 66 LKKLFTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKK-EMKEKMTSLSLLLMLVFVVGACCNFGRVYL 144 (644)
Q Consensus 66 ~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 144 (644)
+++++++++++++.+.++++++++..++.++.|+++++++|........ ..........+.++++.++..+..++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (574)
T PRK11160 4 LLPFLKLYKRHWFMLSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFNYMLPAAGVRGAAIGRTAGRYGERLV 83 (574)
T ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456778889999999999999999999999999999999976422210 000011111223444556778889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 145 MNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLA 224 (644)
Q Consensus 145 ~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~ 224 (644)
.++.+.++..++|.++|+|++++|+.+|++.++|++++|+++|++.+++++...+.+++.+++++++.++++++++|.++
T Consensus 84 ~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 163 (574)
T PRK11160 84 SHDATFRVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLTLA 163 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 225 LISLIIVPPVAG-LAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALA 303 (644)
Q Consensus 225 li~l~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 303 (644)
+++++++|++++ ++.++.++.++..++.++..++.++.+.|.++|+++||+||.|+.+.++|.+..++..+...+..+.
T Consensus 164 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 243 (574)
T PRK11160 164 LTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQANL 243 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998877776654 4577788888889999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy5743 304 KGVFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAY-IGISIGGLSNFYSELNKGLGACHRLWEIMEREP 382 (644)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~~t~g~l~a~~~~~~~-~~~~l~~l~~~~~~~~~~~~s~~Rl~~~l~~~~ 382 (644)
......+..++..+..++++++|+++ ..|.+++|.++++..+... ...|+..+...+..++++..+.+|+.++++.++
T Consensus 244 ~~~~~~~~~~~~~~~~~~i~~~g~~~-~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~ 322 (574)
T PRK11160 244 TGLSQALMILANGLTVVLMLWLAAGG-VGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKP 322 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 88777777777777778888999988 4899999999998887654 456889999999999999999999999998766
Q ss_pred CccCCCCCccCCCCCccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEEC
Q psy5743 383 LISTSGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILID 462 (644)
Q Consensus 383 ~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~id 462 (644)
+.+......+ .+..+.|+++||+|+|+++ ++++|+|+||+++|||++|||||||||||||+++|+|+|+|++|+|++|
T Consensus 323 ~~~~~~~~~~-~~~~~~i~~~~v~f~y~~~-~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~ 400 (574)
T PRK11160 323 EVTFPTTSTA-AADQVSLTLNNVSFTYPDQ-PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLN 400 (574)
T ss_pred CCCCCcccCC-CCCCCeEEEEEEEEECCCC-CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEC
Confidence 5322211111 1234579999999999853 4579999999999999999999999999999999999999999999999
Q ss_pred CccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCC
Q psy5743 463 GVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIML 542 (644)
Q Consensus 463 g~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~L 542 (644)
|+|+++++.+++|++|+||||||++|+|||+|||++++|+ +++++++++++.+++++|+++ |+||||+|||+|.+|
T Consensus 401 g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~---~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~L 476 (574)
T PRK11160 401 GQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPN---ASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQL 476 (574)
T ss_pred CEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCc---cCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCC
Confidence 9999999999999999999999999999999999999876 899999999999999999999 999999999999999
Q ss_pred ChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEecC
Q psy5743 543 SGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGS 622 (644)
Q Consensus 543 SGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt 622 (644)
||||||||+||||++++|+|||||||||+||+++|+.|.+.|.+..+++|+|+||||+++++.||+|++|++|+++|.|+
T Consensus 477 SgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~ 556 (574)
T PRK11160 477 SGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGT 556 (574)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCC
Confidence 99999999999999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred hhHHhcCCCcHHHHHHHh
Q psy5743 623 YAHLIKNPNSMFNKLMKY 640 (644)
Q Consensus 623 ~~eLl~~~~~~y~~l~~~ 640 (644)
|+||+++ +|.|+++|+.
T Consensus 557 ~~~l~~~-~g~y~~l~~~ 573 (574)
T PRK11160 557 HQELLAQ-QGRYYQLKQR 573 (574)
T ss_pred HHHHHhc-CcHHHHHHhh
Confidence 9999987 7999999874
No 17
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=1.1e-96 Score=838.55 Aligned_cols=567 Identities=26% Similarity=0.424 Sum_probs=496.7
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 64 SELKKLFTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVY 143 (644)
Q Consensus 64 ~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 143 (644)
+.+++++.+.+++++.+...++++++.+++.++.|+++++++|.+....+... .....+++++++..++..++.+++.+
T Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (592)
T PRK10790 9 PTLKRLLAYGSPWRKPLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLPL-GLVAGLAAAYVGLQLLAAGLHYAQSL 87 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcch-hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777788888999888999999999999999999999998765332111 11222233344455567778899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 144 LMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKL 223 (644)
Q Consensus 144 ~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l 223 (644)
.....+.++..++|..+|+++++.|+++|++.++|++++|+++|++.+++++...+..++.+++.+++.++++++++|++
T Consensus 88 ~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 167 (592)
T PRK10790 88 LFNRAAVGVVQQLRTDVMDAALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRM 167 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999888888888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 224 ALISLIIVPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALA 303 (644)
Q Consensus 224 ~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 303 (644)
++++++++|+.+++..++.++.++..++..+..++.++.+.|.++|+++||.|+.|+.+.++|.+..++..+...+..+.
T Consensus 168 ~li~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (592)
T PRK10790 168 ALVAIMIFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRL 247 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988888888888888888888888888889999999999999999999999999999999999888877776665555
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHcCCcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy5743 304 KGVF-FGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMEREP 382 (644)
Q Consensus 304 ~~~~-~~~~~~~~~~~~~~vl~~g~~~v~~g~~t~g~l~a~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~Rl~~~l~~~~ 382 (644)
.... ..+..++..+..+++++++++ +..|.+++|.++++..+...+..|+..++..+..++++..+.+|+.++++.++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~ 326 (592)
T PRK10790 248 DGFLLRPLLSLFSALILCGLLMLFGF-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPR 326 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4432 233333333333333334444 67999999999999999999999999999999999999999999999998654
Q ss_pred CccCCCCCccCCCCCccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEEC
Q psy5743 383 LISTSGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILID 462 (644)
Q Consensus 383 ~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~id 462 (644)
++.... . .+...++|+++||+|+|++ ++++|+|+||+++|||++||||+||||||||+++|+|+|+|++|+|++|
T Consensus 327 ~~~~~~-~--~~~~~~~i~~~~v~f~y~~--~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~id 401 (592)
T PRK10790 327 QQYGND-D--RPLQSGRIDIDNVSFAYRD--DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLD 401 (592)
T ss_pred ccCCCC-c--cCCCCCeEEEEEEEEEeCC--CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEEC
Confidence 422111 1 1123457999999999984 3579999999999999999999999999999999999999999999999
Q ss_pred CccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCC
Q psy5743 463 GVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIML 542 (644)
Q Consensus 463 g~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~L 542 (644)
|+|+++++++++|++|+||||||++|+|||||||++|+ + ++|++++++++.++++++|+++|+||||.+||+|.+|
T Consensus 402 g~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~-~---~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~L 477 (592)
T PRK10790 402 GRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGR-D---ISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNL 477 (592)
T ss_pred CEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCC-C---CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCC
Confidence 99999999999999999999999999999999999996 3 7999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEecC
Q psy5743 543 SGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGS 622 (644)
Q Consensus 543 SGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt 622 (644)
||||||||+|||||+++|+|+|||||||+||+++|+.|.+.|++..+++|+|+||||+++++.||+|++|++|+++|.|+
T Consensus 478 SGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~ 557 (592)
T PRK10790 478 SVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGT 557 (592)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcC
Confidence 99999999999999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred hhHHhcCCCcHHHHHHHhhc
Q psy5743 623 YAHLIKNPNSMFNKLMKYQT 642 (644)
Q Consensus 623 ~~eLl~~~~~~y~~l~~~q~ 642 (644)
|+||+++ ++.|+++++.|.
T Consensus 558 ~~~L~~~-~~~y~~l~~~~~ 576 (592)
T PRK10790 558 HQQLLAA-QGRYWQMYQLQL 576 (592)
T ss_pred HHHHHhC-CCHHHHHHHHHh
Confidence 9999987 699999998774
No 18
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=4.4e-96 Score=831.54 Aligned_cols=567 Identities=32% Similarity=0.526 Sum_probs=520.9
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 67 KKLFTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVYLMN 146 (644)
Q Consensus 67 ~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (644)
++++.+.+++++.++.+++++++.+++.+..|++++.++|....... ...+..+.++++++.++..++.+++.++..
T Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 79 (571)
T TIGR02203 3 RRLWSYVRPYKAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGRD---RSVLWWVPLVVIGLAVLRGICSFVSTYLLS 79 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788899999999999999999999999999999998765432 123333444556667777888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 147 VSAQSITKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLALI 226 (644)
Q Consensus 147 ~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li 226 (644)
+.+.++..++|..+++++++.|.+++++.++|++++|+++|++.+++++...+..++.+++.+++.++++++++|+++++
T Consensus 80 ~~~~~~~~~lr~~l~~~~~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~i 159 (571)
T TIGR02203 80 WVSNKVVRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLI 159 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 227 SLIIVPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAKGV 306 (644)
Q Consensus 227 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (644)
++++.++++++..++.++.++..++..+..++..+.+.|.++|+++||.++.++.+.++|.+..++..+...+..+....
T Consensus 160 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (571)
T TIGR02203 160 VVVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSI 239 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccC
Q psy5743 307 FFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMEREPLIST 386 (644)
Q Consensus 307 ~~~~~~~~~~~~~~~vl~~g~~~v~~g~~t~g~l~a~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~Rl~~~l~~~~~~~~ 386 (644)
...+..++..+..++++++|++++.+|.+|+|.++++..++..+..|+..+.+.+..+++++++.+|+.++++.+++.+.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~ 319 (571)
T TIGR02203 240 SSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDT 319 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 88887787778888899999999999999999999999999999999999999999999999999999999987654322
Q ss_pred CCCCccCCCCCccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccC
Q psy5743 387 SGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDI 466 (644)
Q Consensus 387 ~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i 466 (644)
... +..+..++|+++||+|+|+++ ++++|+|+||++++||+++|+|+||||||||+++|+|+|+|++|+|++||+|+
T Consensus 320 ~~~--~~~~~~~~i~~~~v~f~y~~~-~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i 396 (571)
T TIGR02203 320 GTR--AIERARGDVEFRNVTFRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDL 396 (571)
T ss_pred CCC--CCCCCCCeEEEEEEEEEcCCC-CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeH
Confidence 211 111234579999999999863 46899999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhH
Q psy5743 467 KELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQ 546 (644)
Q Consensus 467 ~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQ 546 (644)
++++.+++|++++||||+|++|+|||||||++++++ +.++++++++++.+++++++.++|+|+||+|||+|.+|||||
T Consensus 397 ~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~--~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq 474 (571)
T TIGR02203 397 ADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTE--QADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQ 474 (571)
T ss_pred HhcCHHHHHhhceEEccCcccccccHHHHHhcCCCC--CCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHH
Confidence 999999999999999999999999999999999762 289999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEecChhHH
Q psy5743 547 KQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHL 626 (644)
Q Consensus 547 kQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eL 626 (644)
||||+||||++++|+|++||||||+||+++|+.+.+.|.+..+++|+|+||||++.++.||+|++|++|++++.|+|+|+
T Consensus 475 rQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l 554 (571)
T TIGR02203 475 RQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNEL 554 (571)
T ss_pred HHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHH
Confidence 99999999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred hcCCCcHHHHHHHhhc
Q psy5743 627 IKNPNSMFNKLMKYQT 642 (644)
Q Consensus 627 l~~~~~~y~~l~~~q~ 642 (644)
+++ ++.|++++..|.
T Consensus 555 ~~~-~~~~~~~~~~~~ 569 (571)
T TIGR02203 555 LAR-NGLYAQLHNMQF 569 (571)
T ss_pred HHc-CCHHHHHHHHhh
Confidence 987 689999988764
No 19
>KOG0056|consensus
Probab=100.00 E-value=5.7e-100 Score=777.61 Aligned_cols=551 Identities=27% Similarity=0.431 Sum_probs=470.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHH
Q psy5743 80 LTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVV------GACCNFGRVYLMNVSAQSIT 153 (644)
Q Consensus 80 l~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~l~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~ 153 (644)
.+...++..+.-++....|.+..+++|.+.... .....+. ...+++.++ +++++.+|.++...+.+-..
T Consensus 217 v~~cl~ll~i~rli~~~~pi~~k~iv~~ltap~--~~~~~~~---~~~v~L~flqg~gtgsG~~~nlRtfLWi~VqQytt 291 (790)
T KOG0056|consen 217 VVFCLFLLIIGRLINVSLPILSKWIVDELTAPD--TFQYSLV---FLYVFLKFLQGGGTGSGFLNNLRTFLWIPVQQYTT 291 (790)
T ss_pred HHHHHHHHHHHHHHhhhhHHhHHHHHHhhcCcc--hhhHHHH---HHHHHHHHHhcCCccccchhhhheeEEEEhhHhHH
Confidence 334444455556677789999999999886321 2222222 222223332 25678888888888889999
Q ss_pred HHHHHHHHHHHHcCChhhhhccChhHHHHHHHhhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 154 KKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVS--QCVTQNISDGLRSTVMVSAGVSMMFIISSKLALISLIIV 231 (644)
Q Consensus 154 ~~lr~~~~~~ll~~~~~~~~~~~~G~i~sr~~~D~~~i~--~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~ 231 (644)
+++-..+|.|+.++++.|+-.+.+|+++.-+....+.+. +.+...+.+.+.++...++++ .+.++||.++++++++
T Consensus 292 R~ie~~lfrHlh~LSlrwHL~rrtGeVLrvmdrGtssvtll~yvVF~i~PtllDl~va~vYF--~~~Fn~wFgLIVfl~m 369 (790)
T KOG0056|consen 292 REIETELFRHLHNLSLRWHLNRRTGEVLRVMDRGTSSVTLLEYVVFQIGPTLLDLGVAMVYF--FIKFNIWFGLIVFLMM 369 (790)
T ss_pred HHHHHHHHHHHHhhceeeeecccccceeehhccCcchhhHHHHHHhhcccHHHHhhhhhhhh--hhhHhHHHHHHHHHHH
Confidence 999999999999999999999999999988876655443 333333344444444333333 3356999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 232 PPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAKGVFFGFT 311 (644)
Q Consensus 232 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (644)
.+++.+.........+.++++..+-.+....-.|++-|.+++|.||+|+++.++|.+...++.+...+....-.+.....
T Consensus 370 ~lY~~~Ti~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnfLN~~Q 449 (790)
T KOG0056|consen 370 LLYCYVTIKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWKSLASLNFLNIVQ 449 (790)
T ss_pred HHHhheeeeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99998888777777777888877777777788899999999999999999999999999888777666544333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCCCCc
Q psy5743 312 GLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMEREPLISTSGGKF 391 (644)
Q Consensus 312 ~~~~~~~~~~vl~~g~~~v~~g~~t~g~l~a~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~Rl~~~l~~~~~~~~~~~~~ 391 (644)
+.+..+..++...+.+|.|..+.+|+|+.+.|.+|..++..|+..++..+..+|++.+.+++++|+++++++..+.++..
T Consensus 450 n~Ii~lgll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd~P~a~ 529 (790)
T KOG0056|consen 450 NGIIGLGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDLPGAP 529 (790)
T ss_pred hhhhhhHHhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhcCCCCC
Confidence 44444444444456678888999999999999999999999999999999999999999999999999988877666665
Q ss_pred cCCCCCccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCCh
Q psy5743 392 FSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDP 471 (644)
Q Consensus 392 ~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~ 471 (644)
|.....|.|+|+||+|.|+ +++|+|+||||+++||+++|+|||||+||||++++|.|+|+.++|.|.|||+||++...
T Consensus 530 pl~~~~G~i~fsnvtF~Y~--p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~ 607 (790)
T KOG0056|consen 530 PLKVTQGKIEFSNVTFAYD--PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQ 607 (790)
T ss_pred CccccCCeEEEEEeEEecC--CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHH
Confidence 6666778999999999997 46899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHH
Q psy5743 472 MYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIA 551 (644)
Q Consensus 472 ~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRia 551 (644)
.++|++||+||||..|||+||..||.|++|+ +++||+++|+++|++||-|..+|+||+|.|||+|-.||||||||+|
T Consensus 608 ~SLRs~IGVVPQDtvLFNdTI~yNIryak~~---AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVA 684 (790)
T KOG0056|consen 608 SSLRSSIGVVPQDTVLFNDTILYNIRYAKPS---ASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVA 684 (790)
T ss_pred HHHHHhcCcccCcceeecceeeeheeecCCC---CChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHH
Confidence 9999999999999999999999999999997 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEecChhHHhcCCC
Q psy5743 552 IARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPN 631 (644)
Q Consensus 552 LARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eLl~~~~ 631 (644)
|||+++|+|.|++|||||||||..||+.|+.++.++.++||.|+|||||||+-+||.|+|+++|+|+|.|+|+||+++++
T Consensus 685 iARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~rdg 764 (790)
T KOG0056|consen 685 IARTILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELLKRDG 764 (790)
T ss_pred HHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEEEEEeCCeEeecCcHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999889
Q ss_pred cHHHHHHHhhc
Q psy5743 632 SMFNKLMKYQT 642 (644)
Q Consensus 632 ~~y~~l~~~q~ 642 (644)
|.|++||+.|+
T Consensus 765 G~Ya~MWq~qq 775 (790)
T KOG0056|consen 765 GAYADMWQAQQ 775 (790)
T ss_pred CcHHHHHHHHH
Confidence 99999998764
No 20
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=7.1e-95 Score=822.46 Aligned_cols=566 Identities=26% Similarity=0.404 Sum_probs=502.9
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 65 ELKKLFTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVYL 144 (644)
Q Consensus 65 ~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 144 (644)
.+++++++++++++.+...++++++..++.++.|++++.++|.+..... ...+.++++++.++..+..++..+.
T Consensus 6 ~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (588)
T PRK13657 6 LYARVLQYLGAEKRLGILLAVANVLLAAATFAEPILFGRIIDAISGKGD------IFPLLAAWAGFGLFNIIAGVLVARH 79 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566778888899999999999999999999999999999998765321 1111222222333444455556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 145 MNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLA 224 (644)
Q Consensus 145 ~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~ 224 (644)
..+.+.++..+++.++|+|++++|+.+|++.++|++++|+++|++.+.+.+...+...+..++..++.++++++++|+++
T Consensus 80 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 159 (588)
T PRK13657 80 ADRLAHRRRLAVLTEYFERIIQLPLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLS 159 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777778888999999999999999999999999999999999988888888888888888888888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 225 LISLIIVPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAK 304 (644)
Q Consensus 225 li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (644)
+++++++++++++...+.++.++..++..+..++..+.+.|.++|+++||.|+.++.+.++|.+..++..+...+..+..
T Consensus 160 l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (588)
T PRK13657 160 LVLVVLGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWW 239 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988889999999999999999999999999999999999999999999999999999999988888877777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q psy5743 305 GVFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMEREPLI 384 (644)
Q Consensus 305 ~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~~t~g~l~a~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~Rl~~~l~~~~~~ 384 (644)
........++..+..++++++|++++.+|.+|+|.++++..++..+..|+..+...+..+..+..+.+|+.++++.+++.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~ 319 (588)
T PRK13657 240 ALASVLNRAASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDV 319 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 77777777777778888899999999999999999999999999999999999999999999999999999998865442
Q ss_pred cCCCCCccCCCCCccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCc
Q psy5743 385 STSGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGV 464 (644)
Q Consensus 385 ~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~ 464 (644)
+.........+..+.|+++||+|+|++ ++++|+|+||+++|||++||||+||||||||+|+|+|+|+|++|+|++||+
T Consensus 320 ~~~~~~~~~~~~~~~I~~~~vsf~y~~--~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~ 397 (588)
T PRK13657 320 RDPPGAIDLGRVKGAVEFDDVSFSYDN--SRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGT 397 (588)
T ss_pred CCCCCCCCcCCCCCeEEEEEEEEEeCC--CCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCE
Confidence 221111111123356999999999974 356999999999999999999999999999999999999999999999999
Q ss_pred cCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCCh
Q psy5743 465 DIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSG 544 (644)
Q Consensus 465 ~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSG 544 (644)
|+++++.+++|++|+||||+|++|+|||||||++++|+ ++|++++++++.+++++++.++|+|+||.+||+|.+|||
T Consensus 398 ~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~---~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSg 474 (588)
T PRK13657 398 DIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPD---ATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSG 474 (588)
T ss_pred EhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCCC---CCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCH
Confidence 99999999999999999999999999999999999876 889999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEecChh
Q psy5743 545 GQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYA 624 (644)
Q Consensus 545 GQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~ 624 (644)
||||||+||||++++|+|+|||||||+||+++|+.+.+.|.+..+++|+|+||||+++++.||+|++|++|+++|.|+|+
T Consensus 475 Gq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~ 554 (588)
T PRK13657 475 GERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFD 554 (588)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred HHhcCCCcHHHHHHHhhc
Q psy5743 625 HLIKNPNSMFNKLMKYQT 642 (644)
Q Consensus 625 eLl~~~~~~y~~l~~~q~ 642 (644)
||+++ ++.|++++..|.
T Consensus 555 ~l~~~-~~~y~~l~~~~~ 571 (588)
T PRK13657 555 ELVAR-GGRFAALLRAQG 571 (588)
T ss_pred HHHHC-CChHHHHHHHhh
Confidence 99987 799999998663
No 21
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=1.4e-94 Score=819.78 Aligned_cols=571 Identities=38% Similarity=0.658 Sum_probs=512.7
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 65 ELKKLFTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVYL 144 (644)
Q Consensus 65 ~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 144 (644)
..+.++++++++++.+...+++.++.+++.++.|++++.++|.++..... ..+..++.+++++.++..+..+.+.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (576)
T TIGR02204 5 PLAALWPFVRPYRGRVLAALVALLITAAATLSLPYAVRLMIDHGFSKDSS---GLLNRYFAFLLVVALVLALGTAARFYL 81 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccccH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888999999999999999999999999999999986643321 223333334444555666778889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 145 MNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLA 224 (644)
Q Consensus 145 ~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~ 224 (644)
..+.+.++...+|..++++++++|.++|++.+.|++++|+++|++.+++++...+..++.+++.+++.++++++++|+++
T Consensus 82 ~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 161 (576)
T TIGR02204 82 VTWLGERVVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLT 161 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 99999999999999999999999999999999999999999999999999888888888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 225 LISLIIVPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAK 304 (644)
Q Consensus 225 li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (644)
+++++.+|+++++..++.++.++..++..+..++..+.+.|.++|+++||.++.|+.+.++|.+..++..+...+..+..
T Consensus 162 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (576)
T TIGR02204 162 SLVLLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTR 241 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888888888889999999999999999999999999999999999999999999999999998888877777766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q psy5743 305 GVFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMEREPLI 384 (644)
Q Consensus 305 ~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~~t~g~l~a~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~Rl~~~l~~~~~~ 384 (644)
........++..+..++++++|++.+..|.+|+|+++++..+...+..|+..++..+..++.+..+.+|+.++++.+++.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~ 321 (576)
T TIGR02204 242 ALLTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDI 321 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcC
Confidence 66666666666666777888999999999999999999999999999999999999999999999999999999865542
Q ss_pred cCCCCC-ccCCCCCccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECC
Q psy5743 385 STSGGK-FFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDG 463 (644)
Q Consensus 385 ~~~~~~-~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg 463 (644)
+..... ....+..+.|+++||+|+||++.++++|+|+||+++|||++||+|+||||||||+|+|+|+|+|++|+|++||
T Consensus 322 ~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g 401 (576)
T TIGR02204 322 KAPAHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDG 401 (576)
T ss_pred CCCCCCccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECC
Confidence 211111 1111223569999999999864346899999999999999999999999999999999999999999999999
Q ss_pred ccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCC
Q psy5743 464 VDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLS 543 (644)
Q Consensus 464 ~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LS 543 (644)
+|+++++++++|++++||||||++|+|||||||++++|+ .++++++++++.+++++++.++|+|+||++||+|.+||
T Consensus 402 ~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~---~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LS 478 (576)
T TIGR02204 402 VDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPD---ATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLS 478 (576)
T ss_pred EEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCC---CCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCC
Confidence 999999999999999999999999999999999999876 78999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEecCh
Q psy5743 544 GGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSY 623 (644)
Q Consensus 544 GGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~ 623 (644)
|||||||+||||++++|+|+|||||||+||.++|+.+.+.|++..+++|+|+||||++.++.||+|++|++|+++|.|+|
T Consensus 479 gGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~ 558 (576)
T TIGR02204 479 GGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTH 558 (576)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecH
Confidence 99999999999999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred hHHhcCCCcHHHHHHHhhc
Q psy5743 624 AHLIKNPNSMFNKLMKYQT 642 (644)
Q Consensus 624 ~eLl~~~~~~y~~l~~~q~ 642 (644)
++++++ ++.|+++++.|.
T Consensus 559 ~~l~~~-~~~~~~l~~~~~ 576 (576)
T TIGR02204 559 AELIAK-GGLYARLARLQF 576 (576)
T ss_pred HHHHHc-CChHHHHHhhcC
Confidence 999986 799999998773
No 22
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=4.3e-94 Score=812.76 Aligned_cols=565 Identities=27% Similarity=0.406 Sum_probs=504.0
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 65 ELKKLFTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVYL 144 (644)
Q Consensus 65 ~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 144 (644)
.+++++++++++|+.++..++++++.+++.++.|+++++++|.+..... .... .+++++..++..+..++..++
T Consensus 6 ~~~~l~~~l~~~k~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~ 79 (585)
T TIGR01192 6 VYVRALSYLNVHKNRVLLIVIANITLAAITIAEPILFGRIIDAISSKSD-----VLPT-LALWAGFGVFNTIAYVLVARE 79 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-----HHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 3567888889999999999999999999999999999999998764321 1111 112222344455566666777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 145 MNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLA 224 (644)
Q Consensus 145 ~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~ 224 (644)
..+.+.++..++|.++|+|++++|+++|+++++|++++|+++|++.+++++...+...+..++++++++++++.++|.++
T Consensus 80 ~~~~~~~~~~~lr~~~~~~l~~l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 159 (585)
T TIGR01192 80 ADRLAHGRRATLLTEAFGRIISMPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLS 159 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777788888888999999999999999999999999999999999999888888888888888888888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 225 LISLIIVPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAK 304 (644)
Q Consensus 225 li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (644)
+++++++|+++++..++.++.++..++..+..++..+.+.|.++|+++||+||.|+.+.++|.+..++..+...+..+..
T Consensus 160 li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (585)
T TIGR01192 160 IVLMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWW 239 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998888877777776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q psy5743 305 GVFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMEREPLI 384 (644)
Q Consensus 305 ~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~~t~g~l~a~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~Rl~~~l~~~~~~ 384 (644)
.....+..++..+..++++++|++++.+|.+|+|.++++..+...+..|+..+.+.+..++.+..+.+|+.++++.+++.
T Consensus 240 ~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~ 319 (585)
T TIGR01192 240 ALASGLNRMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQR 319 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccc
Confidence 66666666666777788889999999999999999999999999999999999999999999999999999999865543
Q ss_pred cCCCCCccCCCCCccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCc
Q psy5743 385 STSGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGV 464 (644)
Q Consensus 385 ~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~ 464 (644)
.+...........+.|+++||+|+|++ ++++|+|+||++++||++|||||||||||||+++|+|+|+|++|+|++||+
T Consensus 320 ~~~~~~~~~~~~~~~i~~~~v~~~y~~--~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~ 397 (585)
T TIGR01192 320 EEPADAPELPNVKGAVEFRHITFEFAN--SSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGI 397 (585)
T ss_pred cCCccCCCCCCCCCeEEEEEEEEECCC--CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCE
Confidence 221111111122356999999999974 246899999999999999999999999999999999999999999999999
Q ss_pred cCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCCh
Q psy5743 465 DIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSG 544 (644)
Q Consensus 465 ~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSG 544 (644)
|+++++++++|++++||||+|++|++||+|||+++.|+ +++++++++++.+++++++.++|+|+||.+||+|.+|||
T Consensus 398 ~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~---~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSg 474 (585)
T TIGR01192 398 DINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREG---ATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSG 474 (585)
T ss_pred EhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCC---CCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCH
Confidence 99999999999999999999999999999999999876 789999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEecChh
Q psy5743 545 GQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYA 624 (644)
Q Consensus 545 GQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~ 624 (644)
||||||+|||||+++|+++|||||||+||+++|+.+.+.|.+..+++|+|+||||+++++.||+|++|++|++++.|+|+
T Consensus 475 Gq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~ 554 (585)
T TIGR01192 475 GERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQ 554 (585)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred HHhcCCCcHHHHHHHhh
Q psy5743 625 HLIKNPNSMFNKLMKYQ 641 (644)
Q Consensus 625 eLl~~~~~~y~~l~~~q 641 (644)
|++++ +|.|+++++.|
T Consensus 555 ~l~~~-~~~y~~l~~~~ 570 (585)
T TIGR01192 555 ELIQK-DGRFYKLLRRS 570 (585)
T ss_pred HHHHC-CChHHHHHHhC
Confidence 99987 79999999876
No 23
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=5e-95 Score=814.59 Aligned_cols=525 Identities=24% Similarity=0.307 Sum_probs=465.4
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 67 KKLFTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVYLMN 146 (644)
Q Consensus 67 ~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (644)
++++++.+++++.++..++++++.+++.++.|+++++++|.+..... . ..+..+.+.++++.++..+..+++.+...
T Consensus 2 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (529)
T TIGR02868 2 LRILPLLQPRTRRLVVAILLGALALGSAVALLGVSAWLISRAAEMPP-V--LYLSVAAVAVRAFGIGRAVFRYLERLVGH 78 (529)
T ss_pred hhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch-h--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677788899989899999999999999999999999998764321 1 11111222233345566778889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 147 VSAQSITKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLALI 226 (644)
Q Consensus 147 ~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li 226 (644)
+.+.++..++|.++|+|++++|.++|++.++|++++|+++|++.+++++...+..++.+++.+++.++++++++|.++++
T Consensus 79 ~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~ 158 (529)
T TIGR02868 79 DAALRSLGRLRVRVYDRLARLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAALV 158 (529)
T ss_pred HHHHHHHHHHHHHHHHHhhccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999889999999998999999999999999999
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 227 SLIIVPPVAGLA-IVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAKG 305 (644)
Q Consensus 227 ~l~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (644)
+++.+|++.++. .+..+..++..++..+..++..+.+.|.++|+++||+|++|+.+.++|.+..++..+...+..+...
T Consensus 159 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (529)
T TIGR02868 159 LAAGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARATG 238 (529)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888877766555 4444555667778888889999999999999999999999999999999999999988888888887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Q psy5743 306 VFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMEREPLIS 385 (644)
Q Consensus 306 ~~~~~~~~~~~~~~~~vl~~g~~~v~~g~~t~g~l~a~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~Rl~~~l~~~~~~~ 385 (644)
.......++..+..++++++|++++.+|.+|+|.++++..+...+..|+..+.+.+..++++..+.+|+.++++.+++.+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~ 318 (529)
T TIGR02868 239 LGAAAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRP 318 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcC
Confidence 77777777777778888899999999999999999999999999999999999999999999999999999998765432
Q ss_pred CCCCC--ccCCCCCccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECC
Q psy5743 386 TSGGK--FFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDG 463 (644)
Q Consensus 386 ~~~~~--~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg 463 (644)
..... ....+..++|+++||+|+|++ ++++|+|+||+|+|||++|||||||||||||+|+|+|+|+|++|+|++||
T Consensus 319 ~~~~~~~~~~~~~~~~I~~~~vsf~Y~~--~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g 396 (529)
T TIGR02868 319 EGVVPAAGALGLGKPTLELRDLSFGYPG--SPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDG 396 (529)
T ss_pred CCCCCCCcccCCCCceEEEEEEEEecCC--CCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECC
Confidence 21111 011123357999999999975 34699999999999999999999999999999999999999999999999
Q ss_pred ccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCC
Q psy5743 464 VDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLS 543 (644)
Q Consensus 464 ~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LS 543 (644)
+|++++ .+++|++|+||||||+||+|||||||++|+|+ +++|++++|++.++++|||.+||+||||+|||+|.+||
T Consensus 397 ~~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~---~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LS 472 (529)
T TIGR02868 397 VSVSSL-QDELRRRISVFAQDAHLFDTTVRDNLRLGRPD---ATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLS 472 (529)
T ss_pred EEhhhH-HHHHHhheEEEccCcccccccHHHHHhccCCC---CCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCC
Confidence 999999 99999999999999999999999999999876 89999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCc
Q psy5743 544 GGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRL 600 (644)
Q Consensus 544 GGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl 600 (644)
|||||||+||||++++|+||||||||||||+++|+.|++.+.+..+++|+|+||||+
T Consensus 473 GGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 473 GGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 999999999999999999999999999999999999999999988999999999996
No 24
>KOG0057|consensus
Probab=100.00 E-value=3.7e-95 Score=759.30 Aligned_cols=554 Identities=29% Similarity=0.444 Sum_probs=487.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 80 LTGAVCLLLVSSSITMAVPFALGKVIDVIYTSD-KKEMKEKMTSLSLLLMLVFVVGACCNFGRVYLMNVSAQSITKKLRE 158 (644)
Q Consensus 80 l~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~ 158 (644)
++.++++.+.+-.+....|+++...+|.+.... .+.........+..+.++-+...+++.++..++.++.+++.+..-.
T Consensus 32 v~~~l~~l~~aK~l~v~vp~~~~~~id~l~~~~~~~a~~~~~~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~ 111 (591)
T KOG0057|consen 32 VFPALGLLLGAKILNVQVPFIFKLIIDGLNDADGNPAVLSTITALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSS 111 (591)
T ss_pred HHHHHHHHHhhhHhheehHHHHHHHHhhhhhcccCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455556788889999999999874211 1111223344555666677788889999999999999999999999
Q ss_pred HHHHHHHcCChhhhhccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q psy5743 159 RLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMM-FIISSKLALISLIIVPPVAGL 237 (644)
Q Consensus 159 ~~~~~ll~~~~~~~~~~~~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l-~~~~~~l~li~l~~~~l~~~~ 237 (644)
++|.++++++.++|.++.+|++.+.+.+....+..++...+..++..++-+..+...+ +-..+..+++.++....|...
T Consensus 112 ~vf~~~~~ld~~~~~~~~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~ 191 (591)
T KOG0057|consen 112 DVFRHLMSLDLSFFLSRGTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAF 191 (591)
T ss_pred HHHHHHHhhhHHhhcCCCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhee
Confidence 9999999999999999999999999999999999999888888877776655555444 346778888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 238 AIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAKGVFFGFTGLSGNA 317 (644)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (644)
......+..+.++++..+.+...+.+.|++.|.++||.||.|+++.++|.....++.+...+.....++.......++..
T Consensus 192 Ti~~t~~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFsv 271 (591)
T KOG0057|consen 192 TIVVTRWRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFSV 271 (591)
T ss_pred EEeehhHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHH
Confidence 88889999999999999999999999999999999999999999999999999999988888777777777777777767
Q ss_pred HHHHHHHHHHHHHHcCCcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCCCCccCCCCC
Q psy5743 318 IILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMEREPLISTSGGKFFSHSLK 397 (644)
Q Consensus 318 ~~~~vl~~g~~~v~~g~~t~g~l~a~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~Rl~~~l~~~~~~~~~~~~~~~~~~~ 397 (644)
....+++.|..-+.+|.+|+|+++....+..++..|+..++..+..+.++..-++-++...+......+. ..+....+
T Consensus 272 ~~~~im~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~i~~~--~~~i~~~~ 349 (591)
T KOG0057|consen 272 ALTFIMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDEDIQEA--ALPIELFG 349 (591)
T ss_pred HHHHHHHHHhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhhhhhc--cCCcccCC
Confidence 7777778888888999999999999999999999999999999999999888777666554433222211 12223445
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcc
Q psy5743 398 GEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQ 477 (644)
Q Consensus 398 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~ 477 (644)
+.|+|+||+|+|++ ++++|+++||+||+||+|||||+|||||||++++|+||++ ++|+|+|||+|+++++++++|+.
T Consensus 350 ~~I~F~dV~f~y~~--k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~ 426 (591)
T KOG0057|consen 350 GSIEFDDVHFSYGP--KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQS 426 (591)
T ss_pred CcEEEEeeEEEeCC--CCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhh
Confidence 67999999999974 5679999999999999999999999999999999999999 99999999999999999999999
Q ss_pred eEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHc
Q psy5743 478 IGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALI 557 (644)
Q Consensus 478 i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll 557 (644)
|||||||..||++||.+||.||+|. +++||+.++|+.+++||-|.++|+||+|.|||+|..||||||||++||||++
T Consensus 427 Ig~VPQd~~LFndTIl~NI~YGn~s---as~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~l 503 (591)
T KOG0057|consen 427 IGVVPQDSVLFNDTILYNIKYGNPS---ASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFL 503 (591)
T ss_pred eeEeCCcccccchhHHHHhhcCCCC---cCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHh
Confidence 9999999999999999999999997 9999999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEecChhHHhcCCCcHHHHH
Q psy5743 558 KKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKL 637 (644)
Q Consensus 558 ~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eLl~~~~~~y~~l 637 (644)
|||||++||||||+||.+||+.+.+.|.+...+||+|+|+||++++++||+|+++++|++.|.|||+||++ +.+.|+++
T Consensus 504 Kda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~-~s~~~~~~ 582 (591)
T KOG0057|consen 504 KDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLA-PSELYADL 582 (591)
T ss_pred cCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhh-hhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 48999999
Q ss_pred HHhhc
Q psy5743 638 MKYQT 642 (644)
Q Consensus 638 ~~~q~ 642 (644)
|..|-
T Consensus 583 w~~~~ 587 (591)
T KOG0057|consen 583 WTTQT 587 (591)
T ss_pred hcccc
Confidence 98764
No 25
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-93 Score=748.20 Aligned_cols=559 Identities=24% Similarity=0.345 Sum_probs=490.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 74 KSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVYLMNVSAQSIT 153 (644)
Q Consensus 74 ~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (644)
+.+|+.++++++++++..+.....-.+.+|+|..-...+.... -.....+..+=+..+...+.+|+.++..+....++.
T Consensus 12 ~~~~~~l~Lgi~l~~~t~lasigLl~lSGwfisasAiag~~~~-f~~~~p~a~VR~~aI~Rt~~RY~ERlvsH~AtfrvL 90 (573)
T COG4987 12 KRHKFGLLLGIVLAILTLLASIGLLTLSGWFISASAIAGLAYI-FNVMLPSAGVRGLAILRTAARYVERLVSHDATFRVL 90 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 3377788899999999888888899999999985433322111 111112222333566778899999999999999999
Q ss_pred HHHHHHHHHHHHcCChhhhhccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Q psy5743 154 KKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLALISLIIV-P 232 (644)
Q Consensus 154 ~~lr~~~~~~ll~~~~~~~~~~~~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~-~ 232 (644)
..+|..+|+++...++.-..+.++||+++|+..|++.+++.+...+.+.+.+++...+..+.+-+++|++++...+++ .
T Consensus 91 ~~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~~i~L~f~~~~~Alll~~~ll~ 170 (573)
T COG4987 91 SALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSIPLALLLGLILLL 170 (573)
T ss_pred HHHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999988877777777788998887765444 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 233 PVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAKGVFFGFTG 312 (644)
Q Consensus 233 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (644)
+.++++..+.+.-++..++..+.++.+.+++.|.+.|..+.+.||.++.+...+.+....+.+...+.++...+......
T Consensus 171 ~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~~~q~k~~~~~~~~~a~~~ 250 (573)
T COG4987 171 LLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQARFTGLSDAILL 250 (573)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677888899999999999999999999999999999999999999999999999999999999999999888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCcCHhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCccCCCCCc
Q psy5743 313 LSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLS-NFYSELNKGLGACHRLWEIMEREPLISTSGGKF 391 (644)
Q Consensus 313 ~~~~~~~~~vl~~g~~~v~~g~~t~g~l~a~~~~~~~~~~~l~~l~-~~~~~~~~~~~s~~Rl~~~l~~~~~~~~~~~~~ 391 (644)
++..+..+..+.+.+..+..|..+...+.+++........++..+. ..+..+.+...|..|+.++.+.+++...+..+.
T Consensus 251 l~~g~~v~~~l~w~a~~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq~~~Sa~Rl~~i~~q~~e~~~~~~~~ 330 (573)
T COG4987 251 LIAGLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQKPEVTFPDEQT 330 (573)
T ss_pred HHHHHHHHHHHHHHHhcCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhHHHHHHHHHhhhccCCcccCCCcccc
Confidence 8777766655566666777888886555555555555666666666 777889999999999999999887754442211
Q ss_pred cCCCCCccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCCh
Q psy5743 392 FSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDP 471 (644)
Q Consensus 392 ~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~ 471 (644)
+ .....++++||||+||+ .++++|+|+||++++||+|||+|+||||||||+++|.|.|+|++|+|.++|.|++.++.
T Consensus 331 ~--~~~~~l~~~~vsF~y~~-~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~ 407 (573)
T COG4987 331 A--TTGQALELRNVSFTYPG-QQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDE 407 (573)
T ss_pred C--CccceeeeccceeecCC-CccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCCh
Confidence 1 12227999999999997 46789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHH
Q psy5743 472 MYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIA 551 (644)
Q Consensus 472 ~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRia 551 (644)
+.+|+.+++++|+++||+||+|||+.+++|+ ++||+++++++.+|+++++++.|+||+|++||+|.+||||||||++
T Consensus 408 ~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~---AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLA 484 (573)
T COG4987 408 QALRETISVLTQRVHLFSGTLRDNLRLANPD---ASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLA 484 (573)
T ss_pred hhHHHHHhhhccchHHHHHHHHHHHhhcCCC---CCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHH
Confidence 9999999999999999999999999999998 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEecChhHHhcCCC
Q psy5743 552 IARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPN 631 (644)
Q Consensus 552 LARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eLl~~~~ 631 (644)
|||+|++|+|++||||||.+||++||+.+++.|.+..++||+|+||||+..++.||+|+||++|+++|+|+|+||+++ +
T Consensus 485 lAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~~drIivl~~Gkiie~G~~~~Ll~~-~ 563 (573)
T COG4987 485 LARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLAN-N 563 (573)
T ss_pred HHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhhcCEEEEEECCeeeecCCHHhhhcc-c
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999996 7
Q ss_pred cHHHHHHHh
Q psy5743 632 SMFNKLMKY 640 (644)
Q Consensus 632 ~~y~~l~~~ 640 (644)
|.|+++++.
T Consensus 564 g~~~~l~q~ 572 (573)
T COG4987 564 GRYKRLYQL 572 (573)
T ss_pred cHHHHHhcc
Confidence 999999874
No 26
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=3.8e-93 Score=803.78 Aligned_cols=548 Identities=28% Similarity=0.436 Sum_probs=487.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 86 LLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVYLMNVSAQSITKKLRERLFGSII 165 (644)
Q Consensus 86 ~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll 165 (644)
+.++.+++.++.|++++.++|.+...... . ..+..++++++++.++..++.+++.++....+.++..++|.++|++++
T Consensus 3 ~~~~~~~~~~~~p~~~~~iid~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll 80 (569)
T PRK10789 3 LLIIIAMLQLIPPKVVGIIVDGVTEQHMT-T-GQILMWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLS 80 (569)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHhccCCcc-h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677788999999999987543211 1 122333444555556677788888999999999999999999999999
Q ss_pred cCChhhhhccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 166 SQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMM-FIISSKLALISLIIVPPVAGLAIVYGKF 244 (644)
Q Consensus 166 ~~~~~~~~~~~~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l-~~~~~~l~li~l~~~~l~~~~~~~~~~~ 244 (644)
++|+++|+++++|++++|+++|++.++..+...+..++..++..++.++++ ++++|.+++++++++|+++++...+.++
T Consensus 81 ~~~~~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~ 160 (569)
T PRK10789 81 RQHPEFYLRHRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQ 160 (569)
T ss_pred cCCHHHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999877777777777666666555555 5789999999999999999989999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 245 VRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAKGVFFGFTGLSGNAIILSVLY 324 (644)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~ 324 (644)
.++..++..+..++..+.+.|.++|+++||+|++|+.+.++|.+..++..+...+..+...........+..+..+++++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 240 (569)
T PRK10789 161 LHERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIG 240 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988888887777777666666666667777889
Q ss_pred HHHHHHHcCCcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCCCCccCCCCCccEEEEE
Q psy5743 325 YGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMEREPLISTSGGKFFSHSLKGEIDFNN 404 (644)
Q Consensus 325 ~g~~~v~~g~~t~g~l~a~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~Rl~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~ 404 (644)
+|++++.+|.+|+|.++++..+...+..|+..++..+..++.+.++.+|+.++++.+++.+..... .++..+.|+++|
T Consensus 241 ~g~~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~~~--~~~~~~~I~~~~ 318 (569)
T PRK10789 241 GGSWMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGSEP--VPEGRGELDVNI 318 (569)
T ss_pred HHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCC--CCCCCCcEEEEE
Confidence 999999999999999999999999999999999999999999999999999999876543222111 112345799999
Q ss_pred EEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecC
Q psy5743 405 IRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQE 484 (644)
Q Consensus 405 vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~ 484 (644)
|+|+|++. ++++|+|+||+++||+++|||||||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++++||+|+
T Consensus 319 v~~~y~~~-~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~ 397 (569)
T PRK10789 319 RQFTYPQT-DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQT 397 (569)
T ss_pred EEEECCCC-CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccC
Confidence 99999853 46799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEE
Q psy5743 485 PTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILL 564 (644)
Q Consensus 485 ~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~Ili 564 (644)
|++|+|||+|||++++|+ +++++++++++.+++++++.++|+|+||.+||+|.+|||||||||+||||++++|+|+|
T Consensus 398 ~~lf~~ti~~Ni~~~~~~---~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~ill 474 (569)
T PRK10789 398 PFLFSDTVANNIALGRPD---ATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILI 474 (569)
T ss_pred CeeccccHHHHHhcCCCC---CCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999999999999999876 89999999999999999999999999999999999999999999999999999999999
Q ss_pred eecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEecChhHHhcCCCcHHHHHHHhhc
Q psy5743 565 LDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLMKYQT 642 (644)
Q Consensus 565 LDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eLl~~~~~~y~~l~~~q~ 642 (644)
||||||+||+++|+.+.+.|++..+++|+|+||||+++++.||+|++|++|++++.|+|+||+++ +|.|+++++.|.
T Consensus 475 lDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~y~~l~~~~~ 551 (569)
T PRK10789 475 LDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQ-SGWYRDMYRYQQ 551 (569)
T ss_pred EECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHHc-CChHHHHHHHhh
Confidence 99999999999999999999998889999999999999999999999999999999999999987 699999998764
No 27
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=8.8e-92 Score=788.30 Aligned_cols=528 Identities=26% Similarity=0.364 Sum_probs=473.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 76 EKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIY-TSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVYLMNVSAQSITK 154 (644)
Q Consensus 76 ~~~~l~~~~~~~~~~~~~~~~~p~~~~~~id~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (644)
+|+.+..+++++++.+++.++.|+++++++|.+. .... ...+..+.++++++.++..++.+++.+...+.+.++..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (529)
T TIGR02857 1 ARRALALLGLLGALGALLIIAQAWLLARVIDGLISAGEP---LAELLPALGALALAVLLRALLGWLGERAAARAAAAVKS 77 (529)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667778889999999999999999999999875 3221 12334444555566677788899999999999999999
Q ss_pred HHHHHHHHHHHcCChhhhhccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 155 KLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLALISLIIVPPV 234 (644)
Q Consensus 155 ~lr~~~~~~ll~~~~~~~~~~~~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~l~ 234 (644)
++|..+|++++++|..+|+++++|++++|+++|++.+++++...+..++.+++.+++.++++++++|.++++++++.|++
T Consensus 78 ~lr~~l~~~l~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~ 157 (529)
T TIGR02857 78 QLRERLLAAVAALGPGWLQGRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLI 157 (529)
T ss_pred HHHHHHHHHHHhCCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988889888888888888899999999999999888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 235 AGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAKGVFFGFTGLS 314 (644)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (644)
.++..++.++.++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|.+..++..+...+..+..........++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (529)
T TIGR02857 158 PIFMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELF 237 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888899888999999999999999999999999999999999999999999988888777777766666666666
Q ss_pred HHHHHHHHHHHHHHHHHcCCcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCCCCccCC
Q psy5743 315 GNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMEREPLISTSGGKFFSH 394 (644)
Q Consensus 315 ~~~~~~~vl~~g~~~v~~g~~t~g~l~a~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~Rl~~~l~~~~~~~~~~~~~~~~ 394 (644)
..+..+++++++++.+.+|.+|+|.++++..+...+..|+..+...+..++++..+.+|+.++++.+++..+.. ..+ .
T Consensus 238 ~~~~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~~~-~~~-~ 315 (529)
T TIGR02857 238 ATLSVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAGKA-PVT-A 315 (529)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCc-CCC-C
Confidence 66666666667778888999999999999999999999999999999999999999999999998543321111 111 1
Q ss_pred CCCccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHH
Q psy5743 395 SLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYL 474 (644)
Q Consensus 395 ~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~l 474 (644)
+..+.|+++||+|+||++ ++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++||+|+++++.+++
T Consensus 316 ~~~~~i~~~~v~f~y~~~-~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~l 394 (529)
T TIGR02857 316 APAPSLEFSGLSVAYPGR-RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSW 394 (529)
T ss_pred CCCCeEEEEEEEEECCCC-CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHH
Confidence 123479999999999863 4579999999999999999999999999999999999999999999999999999999999
Q ss_pred hcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHH
Q psy5743 475 RSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIAR 554 (644)
Q Consensus 475 r~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLAR 554 (644)
|++++||+|+|++|+|||||||+++.|+ +++++++++++.++++++++++|+||||++||+|.+|||||||||+|||
T Consensus 395 r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~---~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laR 471 (529)
T TIGR02857 395 RDQIAWVPQHPFLFAGTIAENIRLARPD---ASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALAR 471 (529)
T ss_pred HhheEEEcCCCcccCcCHHHHHhccCCC---CCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHH
Confidence 9999999999999999999999999876 7899999999999999999999999999999999999999999999999
Q ss_pred HHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEE
Q psy5743 555 ALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVL 612 (644)
Q Consensus 555 All~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl 612 (644)
|++++|+|+|||||||+||+++|+.+.+.|.+..+++|+|+||||+++++.||+|++|
T Consensus 472 al~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 472 AFLRDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred HHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 9999999999999999999999999999999988899999999999999999999986
No 28
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=1.1e-91 Score=860.29 Aligned_cols=563 Identities=23% Similarity=0.316 Sum_probs=469.8
Q ss_pred HHHHHHHhhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 66 LKKLFTLAKSEKRK-LTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVYL 144 (644)
Q Consensus 66 ~~~l~~~~~~~~~~-l~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 144 (644)
++..+.|++...+. .+..+++.++..++....|+.+++..|......... . ...+..+++++.++..++.+++.++
T Consensus 952 ~~~y~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~~--~-~~~~~~iy~~l~i~~~~~~~~~~~~ 1028 (1522)
T TIGR00957 952 LSVYWDYMKAIGLFITFLSIFLFVCNHVSALASNYWLSLWTDDPMVNGTQN--N-TSLRLSVYGALGILQGFAVFGYSMA 1028 (1522)
T ss_pred HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCC--C-cchHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555443222 223333344455666777877777776432111100 0 1112224444555666777778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 145 MNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLA 224 (644)
Q Consensus 145 ~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~ 224 (644)
....+.+...++|..+++++++.|++||+++++|+++||+++|++.+++.+...+..++..++.+++.++++++.+|+++
T Consensus 1029 ~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~~~~~~~ 1108 (1522)
T TIGR00957 1029 VSIGGIQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATPIAA 1108 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCChhHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999988888888888888887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 225 LISLIIVPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAK 304 (644)
Q Consensus 225 li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (644)
++++.++++++++..++.+..++..+...+..+...+++.|+++|+++||+||+|+++.+++.+..+...+.........
T Consensus 1109 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 1188 (1522)
T TIGR00957 1109 VIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVAN 1188 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77766666677777777778888888888889999999999999999999999999988888888777666655444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy5743 305 GVFFGFTGLSGNAIILSVLYYGGVMVS-YETITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMEREPL 383 (644)
Q Consensus 305 ~~~~~~~~~~~~~~~~~vl~~g~~~v~-~g~~t~g~l~a~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~Rl~~~l~~~~~ 383 (644)
.+......+++. +++++++++.+. .|.+++|.+.+++.|...+..|+..+...+.+++.+++|.+|+.++++.+++
T Consensus 1189 ~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e 1265 (1522)
T TIGR00957 1189 RWLAVRLECVGN---CIVLFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKE 1265 (1522)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 444443333332 233444555554 5889999999999999999999999999999999999999999999987665
Q ss_pred ccC--CC-CCccCCCCCccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEE
Q psy5743 384 IST--SG-GKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKIL 460 (644)
Q Consensus 384 ~~~--~~-~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~ 460 (644)
.+. .. ..++.++..+.|+|+||+|+|+++ .+++|+||||+|+|||+|||||+||||||||+++|+|+|+|++|+|+
T Consensus 1266 ~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~ 1344 (1522)
T TIGR00957 1266 APWQIQETAPPSGWPPRGRVEFRNYCLRYRED-LDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEII 1344 (1522)
T ss_pred ccccccCCCCCCCCCCCCcEEEEEEEEEeCCC-CcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEE
Confidence 331 11 111223566789999999999853 35799999999999999999999999999999999999999999999
Q ss_pred ECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCC
Q psy5743 461 IDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGI 540 (644)
Q Consensus 461 idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~ 540 (644)
|||+|+++++++++|++|++|||||+||+|||||||..+. +++|+|+++|++.++++++|.++|+||||+|||+|.
T Consensus 1345 IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~----~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~ 1420 (1522)
T TIGR00957 1345 IDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFS----QYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGE 1420 (1522)
T ss_pred ECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCccc----CCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCC
Confidence 9999999999999999999999999999999999998442 289999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEe
Q psy5743 541 MLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEI 620 (644)
Q Consensus 541 ~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~ 620 (644)
+|||||||||+|||||+|+|+|||||||||+||.+||+.|++.|++.++++|+|+||||++++.+||+|+||++|+|+|.
T Consensus 1421 ~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~ 1500 (1522)
T TIGR00957 1421 NLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEF 1500 (1522)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhHHhcCCCcHHHHHHHh
Q psy5743 621 GSYAHLIKNPNSMFNKLMKY 640 (644)
Q Consensus 621 Gt~~eLl~~~~~~y~~l~~~ 640 (644)
|+|+||+++ +|.|++|++.
T Consensus 1501 G~~~eLl~~-~~~f~~l~~~ 1519 (1522)
T TIGR00957 1501 GAPSNLLQQ-RGIFYSMAKD 1519 (1522)
T ss_pred CCHHHHHhC-CCHHHHHHHH
Confidence 999999987 6999999985
No 29
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=2e-90 Score=778.56 Aligned_cols=540 Identities=23% Similarity=0.320 Sum_probs=476.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 74 KSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVYLMNVSAQSIT 153 (644)
Q Consensus 74 ~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (644)
+++|+.++..++++++.+++.++.|+++++++|.+...... ..+..+.++++++.++..++.+++.+...+.+.++.
T Consensus 2 ~~~k~~~~~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (544)
T TIGR01842 2 SKNKSTFIIVGLFSFVINILMLAPPLYMLQVYDRVLTSGSV---PTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLD 78 (544)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888899999999999999999999999987643321 223334445555666778889999999999999999
Q ss_pred HHHHHHHHHHHHcCChhhhhccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 154 KKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLALISLIIVPP 233 (644)
Q Consensus 154 ~~lr~~~~~~ll~~~~~~~~~~~~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~l 233 (644)
.++|.++|+|++++|+. ..++..+++.+|++.+++++.......+.+.+..++.++++++++|++++++++.+|+
T Consensus 79 ~~lr~~~~~~ll~~~~~-----~~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~l 153 (544)
T TIGR01842 79 GALNQPIFAASFSATLR-----RGKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPIYLLVCFLLHPWIGILALGGAVV 153 (544)
T ss_pred HHHHHHHHHHHhcCccc-----CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99999999999999984 3356788899999999998876444444444444445567889999999999888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 234 VAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAKGVFFGFTGL 313 (644)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (644)
++++..++.++.++..++..+..++..+.+.|.++|+++||+||.|+.+.++|.+..++..+...+..+..+....+..+
T Consensus 154 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (544)
T TIGR01842 154 LVGLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKY 233 (544)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888889999999999999999999999999999999999999999999888888877777777776666
Q ss_pred HHHHHHHHHHHHHHHHHHcCCcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCCCCccC
Q psy5743 314 SGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMEREPLISTSGGKFFS 393 (644)
Q Consensus 314 ~~~~~~~~vl~~g~~~v~~g~~t~g~l~a~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~Rl~~~l~~~~~~~~~~~~~~~ 393 (644)
+..+..++++++|++++.+|.+|+|.++++..+...+..|+..+...+..++++..+.+|+.++++.+++..+. .. .
T Consensus 234 ~~~~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~-~~--~ 310 (544)
T TIGR01842 234 FRIVLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPA-MP--L 310 (544)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCC-CC--C
Confidence 66677778889999999999999999999999999999999999999999999999999999999876543221 11 1
Q ss_pred CCCCccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHH
Q psy5743 394 HSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMY 473 (644)
Q Consensus 394 ~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~ 473 (644)
++..+.|+++||+|+|++. ++++|+|+||+++|||++|||||||||||||+++|+|+|+|++|+|.+||+|+++++.++
T Consensus 311 ~~~~~~i~~~~v~~~y~~~-~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~ 389 (544)
T TIGR01842 311 PEPEGHLSVENVTIVPPGG-KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRET 389 (544)
T ss_pred CCCCCeEEEEEEEEEcCCC-CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHH
Confidence 1233579999999999753 467999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHH
Q psy5743 474 LRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIA 553 (644)
Q Consensus 474 lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLA 553 (644)
+|++++||||+|++|++||+|||++++++ +++++++++++.++++++++++|+|+||.+||+|.+|||||||||+||
T Consensus 390 ~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~---~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lA 466 (544)
T TIGR01842 390 FGKHIGYLPQDVELFPGTVAENIARFGEN---ADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALA 466 (544)
T ss_pred HhhheEEecCCcccccccHHHHHhccCCC---CCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHH
Confidence 99999999999999999999999988765 899999999999999999999999999999999999999999999999
Q ss_pred HHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhhcCEEEEEeCCeEEEecChhHHhc
Q psy5743 554 RALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIK 628 (644)
Q Consensus 554 RAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eLl~ 628 (644)
||++++|++||||||||+||+++|+.+.+.|++.. +++|+|+||||+++++.||+|++|++|+++|.|+|+|+++
T Consensus 467 Rall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 467 RALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred HHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 99999999999999999999999999999999875 6899999999999999999999999999999999999975
No 30
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.2e-90 Score=849.75 Aligned_cols=562 Identities=23% Similarity=0.290 Sum_probs=441.9
Q ss_pred HHHHHHHhhhhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 66 LKKLFTLAKSEKR--KLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVY 143 (644)
Q Consensus 66 ~~~l~~~~~~~~~--~l~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 143 (644)
++.+..|++...+ .+...+++.++..++....++.++...|........ ...+.++++++.++..++.+++.+
T Consensus 901 ~~vy~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~-----~~~~~~i~~~l~~~~~i~~~~~~~ 975 (1622)
T PLN03130 901 WKVLERYKNALGGAWVVMILFLCYVLTEVFRVSSSTWLSEWTDQGTPKTHG-----PLFYNLIYALLSFGQVLVTLLNSY 975 (1622)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCc-----hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555554322 223333444555666677777777777643321111 112233455566667778888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 144 LMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKL 223 (644)
Q Consensus 144 ~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l 223 (644)
+....+.++..++|.+++++++++|+.||+++++|+++||+++|++.+++.+...+..++..++.+++.++++++++|+.
T Consensus 976 ~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd~~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~i~~~~~~~ 1055 (1622)
T PLN03130 976 WLIMSSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLIGIVSTIS 1055 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998888888888888888888888777754
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 224 ALISLIIVPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALA 303 (644)
Q Consensus 224 ~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 303 (644)
.++++.+.++++.+..++.+..++..+......+...+++.|+++|+++||+|++++++.+.+.+..+.. .+....
T Consensus 1056 ~~~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~~----~~~~~~ 1131 (1622)
T PLN03130 1056 LWAIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNN----IRFTLV 1131 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHHH----HHHHHH
Confidence 4433333333333344455566666666777788899999999999999999999986666555544443 332222
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCC-cC-----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 304 KGVFFGFTGL-SGNAIILSVLYYGGVMVSYET-IT-----VGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWE 376 (644)
Q Consensus 304 ~~~~~~~~~~-~~~~~~~~vl~~g~~~v~~g~-~t-----~g~l~a~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~Rl~~ 376 (644)
.........+ +..+..+++++.+.+.+..+. .+ .+.+..++.+...+..++..+...+..++.+..+.+|+.+
T Consensus 1132 ~~~~~~wl~~~l~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~~~~~~~e~~~~sveRi~e 1211 (1622)
T PLN03130 1132 NMSSNRWLAIRLETLGGLMIWLTASFAVMQNGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGT 1211 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2211111111 111222223333334444332 11 2334444455666777778888888889999999999999
Q ss_pred HHhcCCCccCC---CCCccCCCCCccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCC
Q psy5743 377 IMEREPLISTS---GGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD 453 (644)
Q Consensus 377 ~l~~~~~~~~~---~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~ 453 (644)
+++.++|.+.. ....+.++..|.|+|+||+|+|+++ .++||+|+||+|+|||+|||||+||||||||+++|+|+|+
T Consensus 1212 ~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~ 1290 (1622)
T PLN03130 1212 YIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVE 1290 (1622)
T ss_pred HhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCC-CCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCC
Confidence 99876654321 1112223556789999999999753 4679999999999999999999999999999999999999
Q ss_pred CCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccc
Q psy5743 454 PQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDT 533 (644)
Q Consensus 454 p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T 533 (644)
|++|+|+|||+|+++++++++|++|++|||||+||+|||||||.++++ ++|+++++|++.++++++|.++|+||||
T Consensus 1291 p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~~----~tdeei~~Al~~a~l~~~I~~lp~GLdt 1366 (1622)
T PLN03130 1291 LERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNE----HNDADLWESLERAHLKDVIRRNSLGLDA 1366 (1622)
T ss_pred CCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCCC----CCHHHHHHHHHHcCcHHHHHhCccccCc
Confidence 999999999999999999999999999999999999999999998853 7999999999999999999999999999
Q ss_pred cccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEe
Q psy5743 534 IVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLD 613 (644)
Q Consensus 534 ~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~ 613 (644)
+|||+|.+|||||||||+|||||+|+|+|||||||||+||.+||+.|+++|++..+++|+|+||||++|+++||+|+||+
T Consensus 1367 ~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~~DrIlVLd 1446 (1622)
T PLN03130 1367 EVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLD 1446 (1622)
T ss_pred cccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHhCCEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEecChhHHhcCCCcHHHHHHHhh
Q psy5743 614 KGKIVEIGSYAHLIKNPNSMFNKLMKYQ 641 (644)
Q Consensus 614 ~G~ive~Gt~~eLl~~~~~~y~~l~~~q 641 (644)
+|+|+|.|+|+||+++++|.|++|++.+
T Consensus 1447 ~G~IvE~Gt~~eLl~~~~g~f~~L~~~~ 1474 (1622)
T PLN03130 1447 AGRVVEFDTPENLLSNEGSAFSKMVQST 1474 (1622)
T ss_pred CCEEEEeCCHHHHHhCCCCHHHHHHHHc
Confidence 9999999999999987569999999764
No 31
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=1.8e-89 Score=832.18 Aligned_cols=571 Identities=28% Similarity=0.402 Sum_probs=505.1
Q ss_pred HHHHHHHHh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 65 ELKKLFTLA-KSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVY 143 (644)
Q Consensus 65 ~~~~l~~~~-~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 143 (644)
.+..++++. +.+++.++++++++++..++.+++|++++.++|.+.... ....++++++++.++..++.+++.+
T Consensus 46 ~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~p~~~~i~g~iid~~~~~~------~~~~~~~~~~~~~i~~~~~~~~~~~ 119 (1466)
T PTZ00265 46 PFFLPFKCLPASHRKLLGVSFVCATISGGTLPFFVSVFGVIMKNMNLGE------NVNDIIFSLVLIGIFQFILSFISSF 119 (1466)
T ss_pred cHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566665 467778888999999999999999999999999764321 1223344555566777888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 144 LMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKL 223 (644)
Q Consensus 144 ~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l 223 (644)
+....+.++..++|.++|++++++|.+||++.++|++.+|+++|++.+++.+...+..++..++++++.++++++++|.+
T Consensus 120 ~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~~~sw~L 199 (1466)
T PTZ00265 120 CMDVVTTKILKTLKLEFLKSVFYQDGQFHDNNPGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLFKNARL 199 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 224 ALISLIIVPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALA 303 (644)
Q Consensus 224 ~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 303 (644)
++++++++|+++++..++.++++...++..+..++..+.+.|.++|+++||+|+.|+.+.++|.+......+...+....
T Consensus 200 alv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~~k~~~~ 279 (1466)
T PTZ00265 200 TLCITCVFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKANFM 279 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999889889988899999999999999999999999999999999998888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--------CcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 304 KGVFFGFTGLSGNAIILSVLYYGGVMVSYE--------TITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLW 375 (644)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~vl~~g~~~v~~g--------~~t~g~l~a~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~Rl~ 375 (644)
.++..++..++..+..++++|+|++++..| .+++|.+++++.+......++..+...+..++.+..+.+|+.
T Consensus 280 ~~~~~~~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~a~~ri~ 359 (1466)
T PTZ00265 280 ESLHIGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEATNSLY 359 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888777777777778888999999999986 588999988877766656666677778889999999999999
Q ss_pred HHHhcCCCccCCCCCccCCCCCccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCC
Q psy5743 376 EIMEREPLISTSGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQ 455 (644)
Q Consensus 376 ~~l~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~ 455 (644)
++++.+++.+........ +..+.|+++||+|+|+++++.++|+|+||+|++||++|||||||||||||+++|+|+|+|+
T Consensus 360 ~ii~~~~~~~~~~~~~~~-~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~ 438 (1466)
T PTZ00265 360 EIINRKPLVENNDDGKKL-KDIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPT 438 (1466)
T ss_pred HHHcCCCCCCCCCCCccC-CCCCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCC
Confidence 999877654321111111 1224799999999998644457999999999999999999999999999999999999999
Q ss_pred CcEEEE-CCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCC--------------------------------
Q psy5743 456 NGKILI-DGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVND-------------------------------- 502 (644)
Q Consensus 456 ~G~I~i-dg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~-------------------------------- 502 (644)
+|+|++ ||+|+++++..+||++||||+|+|.||++||+|||.+|.+.
T Consensus 439 ~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (1466)
T PTZ00265 439 EGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKC 518 (1466)
T ss_pred CCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccc
Confidence 999999 57999999999999999999999999999999999997421
Q ss_pred ----------------------CCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCC
Q psy5743 503 ----------------------SSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKS 560 (644)
Q Consensus 503 ----------------------~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p 560 (644)
..++++++++++++.+++++||.+||+||||.+|++|.+|||||||||+||||++++|
T Consensus 519 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P 598 (1466)
T PTZ00265 519 AGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNP 598 (1466)
T ss_pred cchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 0136789999999999999999999999999999999999999999999999999999
Q ss_pred CEEEeecccCCCCHHHHHHHHHHHHHHc--CCceEEEEccCchHHhhcCEEEEEeCC-----------------------
Q psy5743 561 KILLLDEATSALDAENEYLVQSAIEKLI--EGKTVLTIAHRLSTIRKSNQICVLDKG----------------------- 615 (644)
Q Consensus 561 ~IliLDEaTSaLD~~~e~~i~~~l~~~~--~~~TvI~IaHrl~~i~~aD~Iivl~~G----------------------- 615 (644)
+|||||||||+||+++|+.|++.|.++. +++|+|+||||+++++.||+|++|++|
T Consensus 599 ~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~~~~~~~~~~~~~~~~ 678 (1466)
T PTZ00265 599 KILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGEDPTKDNKENN 678 (1466)
T ss_pred CEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCccccccccccccccccccccccc
Confidence 9999999999999999999999999886 479999999999999999999999986
Q ss_pred ------------------------eEEEecChhHHhcCCCcHHHHHHHhhc
Q psy5743 616 ------------------------KIVEIGSYAHLIKNPNSMFNKLMKYQT 642 (644)
Q Consensus 616 ------------------------~ive~Gt~~eLl~~~~~~y~~l~~~q~ 642 (644)
+|+|+|||+||++..+|.|+.|++.|.
T Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q~ 729 (1466)
T PTZ00265 679 NKNNKDDNNNNNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQK 729 (1466)
T ss_pred cccccccccccccccccccccCCceeEeeCCHHHHHhccCCcHHHHHhhhc
Confidence 599999999999844799999998874
No 32
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-92 Score=715.82 Aligned_cols=493 Identities=30% Similarity=0.410 Sum_probs=450.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q psy5743 142 VYLMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMM-FIIS 220 (644)
Q Consensus 142 ~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l-~~~~ 220 (644)
..+....++.....+--..|.|+.++++.|+.++.+|.+..-+......++..+...+..++..++-+....+++ ..++
T Consensus 3 ~~~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~~ 82 (497)
T COG5265 3 DRLFSPVGQIAVRVLAYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVYG 82 (497)
T ss_pred hHhhhHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcc
Confidence 445667788888899999999999999999999999999888877777777777777777666666554444444 4689
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHHHHHHHHHHHHHHHHHHHHH
Q psy5743 221 SKLALISLIIVPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKE 300 (644)
Q Consensus 221 ~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 300 (644)
|+.++++++++.+|+++............++..++.+..++...|++-|.+++|.||.|+.+..+|.+..+.+.+...+.
T Consensus 83 ~~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~ 162 (497)
T COG5265 83 WWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKV 162 (497)
T ss_pred cHHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHH
Confidence 99999999999999988888888888889999999999999999999999999999999999999999999999888887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy5743 301 ALAKGVFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMER 380 (644)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~~t~g~l~a~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~Rl~~~l~~ 380 (644)
.....+.......+.......+.+.++..+..|.+|+|+++....+..++..|+..++..+.++.+++...++++++++.
T Consensus 163 ~~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~ 242 (497)
T COG5265 163 HVSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDV 242 (497)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhcc
Confidence 77666666666677777777888889999999999999999999999999999999999999999999999999999998
Q ss_pred CCCccCCCCCccCC-CCCccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEE
Q psy5743 381 EPLISTSGGKFFSH-SLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459 (644)
Q Consensus 381 ~~~~~~~~~~~~~~-~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I 459 (644)
+.+..+.+..++.+ -..+.|.|+||+|.|.+ .+++|+++||++++|+++|||||||+||||++++|.|||++++|.|
T Consensus 243 ~~~v~d~pda~~L~~~~~g~v~F~~V~F~y~~--~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I 320 (497)
T COG5265 243 EAEVSDAPDAPPLWPVRLGAVAFINVSFAYDP--RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSI 320 (497)
T ss_pred chhhccCCCCccccccccceEEEEEEEeeccc--cchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceE
Confidence 77765554444444 34567999999999974 5799999999999999999999999999999999999999999999
Q ss_pred EECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCC
Q psy5743 460 LIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERG 539 (644)
Q Consensus 460 ~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G 539 (644)
.+||+|+++...+++|+.||.||||..|||+||..||.+|+|+ ++++|++.|++.+++++||..+|+||+|.|||+|
T Consensus 321 ~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~---at~eev~aaa~~aqi~~fi~~lP~gy~t~Vgerg 397 (497)
T COG5265 321 TIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPD---ATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERG 397 (497)
T ss_pred EEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCcc---ccHHHHHHHHHHhhhhHHHHhCchhhhcccchhe
Confidence 9999999999999999999999999999999999999999997 9999999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEE
Q psy5743 540 IMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVE 619 (644)
Q Consensus 540 ~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive 619 (644)
-.||||||||+||||+++|+|+||+|||||||||.+||+.|+.+|++..+++|.++|||||||+.+||.|+||++|+|+|
T Consensus 398 lklSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~e 477 (497)
T COG5265 398 LKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVE 477 (497)
T ss_pred eeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecChhHHhcCCCcHHHHHHHh
Q psy5743 620 IGSYAHLIKNPNSMFNKLMKY 640 (644)
Q Consensus 620 ~Gt~~eLl~~~~~~y~~l~~~ 640 (644)
.|+|+||++. +|.|++||.+
T Consensus 478 rg~h~~ll~~-~g~ya~mw~~ 497 (497)
T COG5265 478 RGTHEELLAA-GGLYAEMWRR 497 (497)
T ss_pred cCcHHHHHHc-CChHHHHhcC
Confidence 9999999998 8999999963
No 33
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=5e-89 Score=834.63 Aligned_cols=502 Identities=22% Similarity=0.299 Sum_probs=432.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 135 ACCNFGRVYLMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVS 214 (644)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~ 214 (644)
.+..+++.+.....+.+....+|.++|+++++.|+.||+++++|+++||+++|++.+++.+...+..++..++.+++.++
T Consensus 1012 ~~~~~l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li 1091 (1560)
T PTZ00243 1012 TFSVPLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSIL 1091 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555566667778999999999999999999999999999999999999999999999998888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHHHHHHHHHHHHHHH
Q psy5743 215 MMFIISSKLALISLIIVPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLF 294 (644)
Q Consensus 215 ~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~ 294 (644)
++++.+|.+.++++.+..+++.+...+.+..++..+......+...+++.|+++|+++||+|++++.+.++|.+..+...
T Consensus 1092 ~~~~~~p~~~~~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~ 1171 (1560)
T PTZ00243 1092 VTSASQPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVY 1171 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHH
Confidence 88888886655544444445555666777778888888888999999999999999999999999999999999988887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HcCCcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 295 ELAKKEALAKGVFFGFTGLSGNAIILSVLYYGGVMV--SYETITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACH 372 (644)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~g~~~v--~~g~~t~g~l~a~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ 372 (644)
+..........+......++..+..+++.+++.+.. ..+.+++|.+..++++...+..|+..+...+.+++.++.+.+
T Consensus 1172 ~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~e 1251 (1560)
T PTZ00243 1172 SCSYLENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVE 1251 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776665555555555555555554444444444433 345689999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCccCC--------------------------CCCc----cCCCCCccEEEEEEEEEcCCCCCCcccccee
Q psy5743 373 RLWEIMEREPLISTS--------------------------GGKF----FSHSLKGEIDFNNIRFSYPSRPDAVILNDLS 422 (644)
Q Consensus 373 Rl~~~l~~~~~~~~~--------------------------~~~~----~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~is 422 (644)
|+.++++..++++.. .... +.++..+.|+|+||+|+|+++ .+++|+|||
T Consensus 1252 Ri~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~-~~~vL~~vs 1330 (1560)
T PTZ00243 1252 RLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREG-LPLVLRGVS 1330 (1560)
T ss_pred HHHHHHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCC-CCceeecce
Confidence 999999643321100 0000 111234679999999999753 467999999
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCC
Q psy5743 423 LKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVND 502 (644)
Q Consensus 423 l~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~ 502 (644)
|+|+|||+|||||+||||||||+++|+|+|+|++|+|+|||+|+++++.+++|++|++|||||+||+|||||||..++
T Consensus 1331 f~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~-- 1408 (1560)
T PTZ00243 1331 FRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFL-- 1408 (1560)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCccc--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998763
Q ss_pred CCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccC-CCEEEeecccCCCCHHHHHHHH
Q psy5743 503 SSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKK-SKILLLDEATSALDAENEYLVQ 581 (644)
Q Consensus 503 ~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~-p~IliLDEaTSaLD~~~e~~i~ 581 (644)
+++|+|+++|++.++++++|.++|+||||.|||+|.+|||||||||+|||||+++ |+|||||||||+||+++|+.|+
T Consensus 1409 --~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq 1486 (1560)
T PTZ00243 1409 --EASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQ 1486 (1560)
T ss_pred --CCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHH
Confidence 3899999999999999999999999999999999999999999999999999996 8999999999999999999999
Q ss_pred HHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEecChhHHhcCCCcHHHHHHHhh
Q psy5743 582 SAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLMKYQ 641 (644)
Q Consensus 582 ~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eLl~~~~~~y~~l~~~q 641 (644)
+.|++.++++|+|+||||++++++||+|+||++|+|+|.|+|+||+++++|.|++|++.+
T Consensus 1487 ~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~~l~~~~ 1546 (1560)
T PTZ00243 1487 ATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEAL 1546 (1560)
T ss_pred HHHHHHCCCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999986579999999765
No 34
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.9e-89 Score=837.92 Aligned_cols=510 Identities=21% Similarity=0.298 Sum_probs=418.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy5743 124 SLLLMLVFVVGACCNFGRVYLMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGL 203 (644)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~sr~~~D~~~i~~~~~~~~~~~~ 203 (644)
..+++++.++..++.+++.+.....+.++..++|.+++++++++|+.||+++++|+++||+++|++.+++.+...+..++
T Consensus 953 l~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~~~~G~ilnr~s~Di~~id~~l~~~~~~~~ 1032 (1495)
T PLN03232 953 IVVYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMFM 1032 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeCcCCchHHHHHhHhhHHHHHHHHHHHHHHHH
Confidence 34455566667778888999999999999999999999999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHHHH
Q psy5743 204 RSTVMVSAGVSMMFIISSKLALISLIIVPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEM 283 (644)
Q Consensus 204 ~~~~~~i~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~ 283 (644)
..++.+++.+++++++++...++++.+.++++....++.+..++..+......+...+++.|+++|+++||+|++++++.
T Consensus 1033 ~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~ 1112 (1495)
T PLN03232 1033 NQLWQLLSTFALIGTVSTISLWAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMA 1112 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHH
Confidence 88888777777777767544333332222222333344455566777778888899999999999999999999998766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCc----C-HhHHHHHHHHHHHHHHHHHHH
Q psy5743 284 SHFNAKMDDLFELAKKEALAKGVFFGFTGLSGNAIILSVLYYGGVMVS-YETI----T-VGNLSSFLLYAAYIGISIGGL 357 (644)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~g~~~v~-~g~~----t-~g~l~a~~~~~~~~~~~l~~l 357 (644)
+++.+..+...+..........+...... .+..+++++.+.+.+. .|.+ . .+.+..++.+...+..|+..+
T Consensus 1113 ~~~~~~~~~~~~~~~~~~~~~~wl~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l 1189 (1495)
T PLN03232 1113 KINGKSMDNNIRFTLANTSSNRWLTIRLE---TLGGVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLSGV 1189 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 66655544433322221111111111111 1222222233334443 2332 1 233445677778888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCccCC--CC-CccCCCCCccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEE
Q psy5743 358 SNFYSELNKGLGACHRLWEIMEREPLISTS--GG-KFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVI 434 (644)
Q Consensus 358 ~~~~~~~~~~~~s~~Rl~~~l~~~~~~~~~--~~-~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIv 434 (644)
...+.+++.+.++.+|+.++++.+++.+.. .. ..+.++..+.|+|+||+|+|+++ .+++|+|+||+|+|||+||||
T Consensus 1190 ~~~~~~~~~~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~-~~~vL~~isl~I~~GekvaIV 1268 (1495)
T PLN03232 1190 LRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPG-LPPVLHGLSFFVSPSEKVGVV 1268 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCC-CCcccccceEEEcCCCEEEEE
Confidence 999999999999999999999876654321 11 11223456789999999999642 468999999999999999999
Q ss_pred CCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHH
Q psy5743 435 GSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHA 514 (644)
Q Consensus 435 G~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a 514 (644)
||||||||||+++|+|+|+|++|+|.|||+|+++++++++|++|++|||||+||+|||||||.+++ + ++|+|+++|
T Consensus 1269 G~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~-~---~sdeei~~a 1344 (1495)
T PLN03232 1269 GRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFS-E---HNDADLWEA 1344 (1495)
T ss_pred CCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCC-C---CCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999885 2 899999999
Q ss_pred HHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEE
Q psy5743 515 AKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVL 594 (644)
Q Consensus 515 ~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI 594 (644)
++.++++++|+++|+||||+|||+|.+|||||||||+|||||+|+|+|||||||||+||++||+.|++.|++..+++|+|
T Consensus 1345 l~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI 1424 (1495)
T PLN03232 1345 LERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTML 1424 (1495)
T ss_pred HHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCchHHhhcCEEEEEeCCeEEEecChhHHhcCCCcHHHHHHHhh
Q psy5743 595 TIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLMKYQ 641 (644)
Q Consensus 595 ~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eLl~~~~~~y~~l~~~q 641 (644)
+||||++++++||+|+||++|+|+|.|+|+||+++++|.|++|++.+
T Consensus 1425 ~IAHRl~ti~~~DrIlVL~~G~ivE~Gt~~eLl~~~~~~f~~l~~~~ 1471 (1495)
T PLN03232 1425 VIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTSAFFRMVHST 1471 (1495)
T ss_pred EEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHh
Confidence 99999999999999999999999999999999987557999999865
No 35
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=3.3e-88 Score=700.04 Aligned_cols=545 Identities=24% Similarity=0.343 Sum_probs=500.9
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 71 TLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVYLMNVSAQ 150 (644)
Q Consensus 71 ~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (644)
..+..+++.++...+++.+.+++.+..|+++-++.|.+..+.+ ..++..+.++.+.++++..++.++|..+..+++.
T Consensus 16 a~l~~~r~a~~~v~lfS~~INiL~L~~~lyMLQVyDRVL~S~s---~~TLv~Ltvlal~ly~~~glLd~iR~~~l~Rig~ 92 (580)
T COG4618 16 AVLAANRRAFIGVGLFSAVINLLALTGPLYMLQVYDRVLPSRS---VPTLVMLTVLALGLYAFQGLLDAIRSRVLVRIGE 92 (580)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhccCCC---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677788888999999999999999999999999998764 3456777777788888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 151 SITKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLALISLII 230 (644)
Q Consensus 151 ~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~ 230 (644)
++..++...+|...++.+.. .+..|+=.+-+. |.+++++|++..-...+.+.....+++.++|.++|+++++.++.
T Consensus 93 ~lD~~L~~~v~~a~~~~~l~---~~~~g~~~Q~Lr-DL~qvR~Fltg~g~~A~fDaPW~P~yl~v~fl~Hp~lG~~a~~g 168 (580)
T COG4618 93 RLDRQLNGPVFAASFSAPLL---RRGSGDGLQPLR-DLDQVRQFLTGTGLTAFFDAPWMPLYLAVIFLFHPWLGLIALAG 168 (580)
T ss_pred HHHHHhccHHHHHHHhhHHh---hcCCCccccchh-hHHHHHHHHcCCCcchhcCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999877655 344555555454 99999999999888889998888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 231 VPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAKGVFFGF 310 (644)
Q Consensus 231 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (644)
..+++.+.++-.+..++..++..+...+.++...-+.+|.++|++.|......++|.+....+.....+..-....+...
T Consensus 169 a~iLv~la~ln~~~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~~~~~~~ 248 (580)
T COG4618 169 AIILVVLALLNERATRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRNGAFGAL 248 (580)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 99999988888888899999999999999999999999999999999999999999999999999888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCCCC
Q psy5743 311 TGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMEREPLISTSGGK 390 (644)
Q Consensus 311 ~~~~~~~~~~~vl~~g~~~v~~g~~t~g~l~a~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~Rl~~~l~~~~~~~~~~~~ 390 (644)
+..+-++....++.+|+|++++|++|.|++++-..+......|+......|.++..+..|++|+.+++...|...+ .
T Consensus 249 Sr~~Rm~lQs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~---~ 325 (580)
T COG4618 249 SRALRMALQSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAAE---R 325 (580)
T ss_pred HHHHHHHHHHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccC---C
Confidence 8888899999999999999999999999999999999999999999999999999999999999999987665322 2
Q ss_pred ccCCCCCccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCC
Q psy5743 391 FFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELD 470 (644)
Q Consensus 391 ~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~ 470 (644)
.+.+.+++.+.++++++.-|+ .++|+++||||+++|||.+||+||||||||||.++|.|..+|.+|.|++||-|++++|
T Consensus 326 m~LP~P~g~L~Ve~l~~~PPg-~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd 404 (580)
T COG4618 326 MPLPAPQGALSVERLTAAPPG-QKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWD 404 (580)
T ss_pred CCCCCCCceeeEeeeeecCCC-CCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCC
Confidence 234456688999999998776 4689999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHH
Q psy5743 471 PMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRI 550 (644)
Q Consensus 471 ~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRi 550 (644)
++.+-++|||.|||..||+|||+|||+-++++ +|+|+|.+|++.++.||.|.++|+||||.|||+|..|||||||||
T Consensus 405 ~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~---~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRI 481 (580)
T COG4618 405 REQLGRHIGYLPQDVELFDGTIAENIARFGEE---ADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRI 481 (580)
T ss_pred HHHhccccCcCcccceecCCcHHHHHHhcccc---CCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHH
Confidence 99999999999999999999999999988776 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhhcCEEEEEeCCeEEEecChhHHhcC
Q psy5743 551 AIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKN 629 (644)
Q Consensus 551 aLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eLl~~ 629 (644)
+||||+|.||.+++||||.||||.+.|+.+.++|.+.. ++.|+|+||||++.+..+|+|++|++|++...|+-+|.+++
T Consensus 482 aLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 482 ALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLAK 561 (580)
T ss_pred HHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHHHHH
Confidence 99999999999999999999999999999999998864 58999999999999999999999999999999999998863
No 36
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.9e-86 Score=811.38 Aligned_cols=547 Identities=20% Similarity=0.264 Sum_probs=450.9
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 70 FTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVYLMNVSA 149 (644)
Q Consensus 70 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (644)
+..++.+++.++.++++.++..++.++.|++++.++|.+..... .. ....+++++++..++..++.....+...+.+
T Consensus 293 ~~l~~~~~~~~~~~~~~~i~~~~~~~~~P~ll~~li~~~~~~~~-~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 369 (1495)
T PLN03232 293 RALNNSLGGRFWLGGIFKIGHDLSQFVGPVILSHLLQSMQEGDP-AW--VGYVYAFLIFFGVTFGVLCESQYFQNVGRVG 369 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-cc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456778888888888999999999999999999998754321 11 1112222333333333444333334447888
Q ss_pred HHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 150 QSITKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLALISLI 229 (644)
Q Consensus 150 ~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~ 229 (644)
.++...++..+|+|+++++..++++.++|+++|++++|++.+++++ ..++.++..++.+++++++++..-.+.+++.++
T Consensus 370 ~~ir~~l~~~i~~k~l~l~~~~~~~~~~G~i~n~ls~Dv~~i~~~~-~~l~~l~~~p~~ii~~~~~l~~~lg~~~l~~~~ 448 (1495)
T PLN03232 370 FRLRSTLVAAIFHKSLRLTHEARKNFASGKVTNMITTDANALQQIA-EQLHGLWSAPFRIIVSMVLLYQQLGVASLFGSL 448 (1495)
T ss_pred HHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999986 577777777777666665554322222222333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 230 IVPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAKGVFFG 309 (644)
Q Consensus 230 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (644)
++++++++..++.++.++..++..+..+++.+.+.|.++|+++||+|+||+.+.+++.+..++..+...+..........
T Consensus 449 v~~l~~pl~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~ 528 (1495)
T PLN03232 449 ILFLLIPLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSF 528 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455677889999999999999999999999999999999999999999999999888877777666655544433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCCC
Q psy5743 310 FTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMEREPLISTSGG 389 (644)
Q Consensus 310 ~~~~~~~~~~~~vl~~g~~~v~~g~~t~g~l~a~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~Rl~~~l~~~~~~~~~~~ 389 (644)
+.... ...+.++++|++.+.+|.+|+|.+++++.++..+..|+..++..+..+.++.++++|+.++++.+++......
T Consensus 529 ~~~~~--~~~~~~~~fg~~~v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~~~~ 606 (1495)
T PLN03232 529 ILNSI--PVVVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILAQNP 606 (1495)
T ss_pred HHHHH--HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccC
Confidence 22221 2234456889999999999999999999999999999999999999999999999999999986654221111
Q ss_pred CccCCCCCccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCC
Q psy5743 390 KFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKEL 469 (644)
Q Consensus 390 ~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~ 469 (644)
+..+..+.|+++|++|+|+++.++++|+|+||+|++||++|||||||||||||+++|+|+|+|++|.+.
T Consensus 607 --~~~~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~--------- 675 (1495)
T PLN03232 607 --PLQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV--------- 675 (1495)
T ss_pred --CcCCCCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE---------
Confidence 111223469999999999864456899999999999999999999999999999999999999998763
Q ss_pred ChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHH
Q psy5743 470 DPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQR 549 (644)
Q Consensus 470 ~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQR 549 (644)
.+|++|+||+|+||||+|||||||+||+| .++++++++++.|+++++++.||+|++|+|||+|.+||||||||
T Consensus 676 ---~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~----~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQR 748 (1495)
T PLN03232 676 ---VIRGSVAYVPQVSWIFNATVRENILFGSD----FESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQR 748 (1495)
T ss_pred ---EecCcEEEEcCccccccccHHHHhhcCCc----cCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHH
Confidence 35779999999999999999999999975 78999999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCCCEEEeecccCCCCHHHHHHHHH-HHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEecChhHHhc
Q psy5743 550 IAIARALIKKSKILLLDEATSALDAENEYLVQS-AIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIK 628 (644)
Q Consensus 550 iaLARAll~~p~IliLDEaTSaLD~~~e~~i~~-~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eLl~ 628 (644)
|+||||+|++|+||||||||||||+++|+.|.+ ++....+++|+|+||||+++++.||+|++|++|+|+|+|+|+||++
T Consensus 749 IaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL~~ 828 (1495)
T PLN03232 749 VSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSK 828 (1495)
T ss_pred HHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHHHHHh
Confidence 999999999999999999999999999998865 4666778999999999999999999999999999999999999998
Q ss_pred CCCcHHHHHHHhh
Q psy5743 629 NPNSMFNKLMKYQ 641 (644)
Q Consensus 629 ~~~~~y~~l~~~q 641 (644)
+ ++.|+++++.+
T Consensus 829 ~-~~~~~~l~~~~ 840 (1495)
T PLN03232 829 S-GSLFKKLMENA 840 (1495)
T ss_pred c-chhHHHHHHhc
Confidence 6 68999998765
No 37
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=5.3e-86 Score=808.94 Aligned_cols=546 Identities=20% Similarity=0.269 Sum_probs=453.5
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 70 FTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVYLMNVSA 149 (644)
Q Consensus 70 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (644)
+..++.+++.++.++++.++..++.++.|++++.++|.+..... .... ..+++++++..++..+......+...+.+
T Consensus 293 ~~l~~~~~~~~~~~~~~~i~~~~~~~~~P~ll~~li~~v~~~~~-~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 369 (1622)
T PLN03130 293 RALNNSLGGRFWLGGFFKIGNDLSQFVGPLLLNLLLESMQNGEP-AWIG--YIYAFSIFVGVVLGVLCEAQYFQNVMRVG 369 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-chHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456788888888899999999999999999999998754321 1111 11122222222222222221222356888
Q ss_pred HHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 150 QSITKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLALISLI 229 (644)
Q Consensus 150 ~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~ 229 (644)
.++...++..+|+|+++++..++++.++|+++|++++|++++++++ ..++.++..++.+++++++++..-++.++++++
T Consensus 370 ~~ir~~L~~~i~~k~L~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~-~~l~~l~~~pl~ii~~~~lL~~~lg~~~l~g~~ 448 (1622)
T PLN03130 370 FRLRSTLVAAVFRKSLRLTHEGRKKFTSGKITNLMTTDAEALQQIC-QQLHTLWSAPFRIIIAMVLLYQQLGVASLIGSL 448 (1622)
T ss_pred HHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999987 567888888888777777666544444445444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 230 IVPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAKGVFFG 309 (644)
Q Consensus 230 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (644)
++++.+++..++.++.++..++..+..+++.+.+.|.++|+++||+|+||+.+.+++.+..++..+...+......+...
T Consensus 449 v~~l~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~ 528 (1622)
T PLN03130 449 MLVLMFPIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSAFNSF 528 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566667778888999999999999999999999999999999999999999999998888777666555554444333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCCC
Q psy5743 310 FTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMEREPLISTSGG 389 (644)
Q Consensus 310 ~~~~~~~~~~~~vl~~g~~~v~~g~~t~g~l~a~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~Rl~~~l~~~~~~~~~~~ 389 (644)
+.... ...+.++++|++.+..|.+|+|.+++++.++..+..|+..++..+..+.++.++++|+.++++.++.......
T Consensus 529 ~~~~~--~~~v~~~~fg~~~~~~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~~~~ 606 (1622)
T PLN03130 529 ILNSI--PVLVTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERVLLPNP 606 (1622)
T ss_pred HHHHH--HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccCC
Confidence 32222 2245566789999999999999999999999999999999999999999999999999999976543211111
Q ss_pred CccCCCCCccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCC-cEEEECCccCCC
Q psy5743 390 KFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQN-GKILIDGVDIKE 468 (644)
Q Consensus 390 ~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~-G~I~idg~~i~~ 468 (644)
+..+..+.|+++|++|+|++++++++|+|+||+|++||++|||||||||||||+++|+|+++|++ |+|.+.|
T Consensus 607 --~~~~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~----- 679 (1622)
T PLN03130 607 --PLEPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRG----- 679 (1622)
T ss_pred --cccCCCCceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcC-----
Confidence 11112346999999999985445689999999999999999999999999999999999999999 9998654
Q ss_pred CChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHH
Q psy5743 469 LDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQ 548 (644)
Q Consensus 469 ~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQ 548 (644)
+|+||+|+||||+|||||||+||+| .++++++++++.|+++++++.||+|++|.|||+|.+|||||||
T Consensus 680 --------~Iayv~Q~p~LfngTIreNI~fg~~----~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQ 747 (1622)
T PLN03130 680 --------TVAYVPQVSWIFNATVRDNILFGSP----FDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQ 747 (1622)
T ss_pred --------eEEEEcCccccCCCCHHHHHhCCCc----ccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHH
Confidence 9999999999999999999999976 6899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCCCEEEeecccCCCCHHHHHHHH-HHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEecChhHHh
Q psy5743 549 RIAIARALIKKSKILLLDEATSALDAENEYLVQ-SAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLI 627 (644)
Q Consensus 549 RiaLARAll~~p~IliLDEaTSaLD~~~e~~i~-~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eLl 627 (644)
||+||||+|++|+||||||||||||+++++.|. +++....+++|+|+||||+++++.||+|++|++|+|+|+|+|+||+
T Consensus 748 RIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~eL~ 827 (1622)
T PLN03130 748 RVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELS 827 (1622)
T ss_pred HHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCHHHHH
Confidence 999999999999999999999999999998775 5677777899999999999999999999999999999999999999
Q ss_pred cCCCcHHHHHHHhh
Q psy5743 628 KNPNSMFNKLMKYQ 641 (644)
Q Consensus 628 ~~~~~~y~~l~~~q 641 (644)
++ ++.|+++++.+
T Consensus 828 ~~-~~~~~~l~~~~ 840 (1622)
T PLN03130 828 NN-GPLFQKLMENA 840 (1622)
T ss_pred hc-chhHHHHHHhc
Confidence 86 68999998754
No 38
>KOG0054|consensus
Probab=100.00 E-value=5.4e-86 Score=768.63 Aligned_cols=549 Identities=23% Similarity=0.303 Sum_probs=485.0
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 69 LFTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVYLMNVS 148 (644)
Q Consensus 69 l~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (644)
+....+.+++.++...++..+......+.|.++..+++.+..... .....+.+++++++..++..++.....+...+.
T Consensus 192 ~~al~~~f~~~~~~~~~~~~~~~~~~~~~P~lL~~li~~~~~~~~--~~~~g~~~a~~lf~~~~l~~l~~~~~~~~~~~~ 269 (1381)
T KOG0054|consen 192 LRALLRTFGRTFLLSGIFLFLRDLAGFVGPLLLKKLILFFSEKRL--PLNNGYLLAVLLFLASLLQSLLLHQYFFVSFRV 269 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHhcCCCc--ccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhh
Confidence 444556789999888888888888899999999999998865421 123344566666667777777777777888999
Q ss_pred HHHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 149 AQSITKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLALISL 228 (644)
Q Consensus 149 ~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l 228 (644)
|.++...+-..+|+|.++++...-..+++|+++|.++.|+++++++ ..+++.+|..++.+++++.+++..-.+.+++++
T Consensus 270 g~r~R~al~~~IY~K~L~ls~~~~~~~t~G~ivNlms~D~~ri~~~-~~~~h~~w~~Plqi~~~l~lLy~~LG~sa~~G~ 348 (1381)
T KOG0054|consen 270 GMRLRSALISAIYRKALRLSNSARGETTVGEIVNLMSVDAQRLSDA-ACFLHLLWSAPLQIILALYLLYGLLGPSALAGV 348 (1381)
T ss_pred hhhHHHHHHHHHHHhhhcCchhhccCCCcchhhhhhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHH
Confidence 9999999999999999999999888999999999999999999996 568999999999999999999988888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 229 IIVPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAKGVFF 308 (644)
Q Consensus 229 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (644)
+++++++++..++.++.++.+.+..+..+++.+.++|.++||++||+|+||+.+.++.++..++..+..++....++...
T Consensus 349 ~~~il~~p~n~~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk~~~~~~~~~ 428 (1381)
T KOG0054|consen 349 AVMVLLIPLNSFLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKSAYLSALNS 428 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998888888888777776
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHcCCcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCC
Q psy5743 309 GFTGLSGNAIILSVLYYGGVM-VSYETITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMEREPLISTS 387 (644)
Q Consensus 309 ~~~~~~~~~~~~~vl~~g~~~-v~~g~~t~g~l~a~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~Rl~~~l~~~~~~~~~ 387 (644)
.....+. ..+.++.++++. ...+.++....++.+++++.+..|+..++..+..+.++.+|++|+.+++..++..+..
T Consensus 429 ~~~~~~p--~lv~~~tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~~~ 506 (1381)
T KOG0054|consen 429 FLNFFSP--VLVSVVTFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELDPDS 506 (1381)
T ss_pred HHHHHHH--HHHHHHHHHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCccc
Confidence 6655443 344445566665 5567889999999999999999999999999999999999999999999876654333
Q ss_pred CCCccCCCCCccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCC
Q psy5743 388 GGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIK 467 (644)
Q Consensus 388 ~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~ 467 (644)
....+..+.+..|+++|.+|+|++.+.++.|+||||+|++|+.+||||++|||||||+..|+|++++.+|+|.++|
T Consensus 507 ~~~~~~~~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~g---- 582 (1381)
T KOG0054|consen 507 VERSPDEAGENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNG---- 582 (1381)
T ss_pred cccCCCCCCCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcC----
Confidence 2211222344579999999999875456699999999999999999999999999999999999999999999999
Q ss_pred CCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHH
Q psy5743 468 ELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQK 547 (644)
Q Consensus 468 ~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQk 547 (644)
.++||||.||||||||||||.||.| .|+++..++++.|+|..+++.||.|+.|+|||+|.|||||||
T Consensus 583 ---------siaYv~Q~pWI~ngTvreNILFG~~----~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQK 649 (1381)
T KOG0054|consen 583 ---------SVAYVPQQPWIQNGTVRENILFGSP----YDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQK 649 (1381)
T ss_pred ---------eEEEeccccHhhCCcHHHhhhcCcc----ccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHH
Confidence 7999999999999999999999976 899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCCCEEEeecccCCCCHHHH-HHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEecChhHH
Q psy5743 548 QRIAIARALIKKSKILLLDEATSALDAENE-YLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHL 626 (644)
Q Consensus 548 QRiaLARAll~~p~IliLDEaTSaLD~~~e-~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eL 626 (644)
|||+||||+|+|+||++||||.||||+++. +.+.++|+..+++||+|+|||+++.+++||+|++|++|+|+++|||+||
T Consensus 650 qRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el 729 (1381)
T KOG0054|consen 650 QRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEEL 729 (1381)
T ss_pred HHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHH
Confidence 999999999999999999999999999955 4556778888999999999999999999999999999999999999999
Q ss_pred hcCCCcHHHHHHHh
Q psy5743 627 IKNPNSMFNKLMKY 640 (644)
Q Consensus 627 l~~~~~~y~~l~~~ 640 (644)
++. ++.|.++..+
T Consensus 730 ~~~-~~~~~~l~~~ 742 (1381)
T KOG0054|consen 730 LKS-GGDFAELAHE 742 (1381)
T ss_pred Hhc-chhHHHHhhc
Confidence 986 6888887543
No 39
>KOG0054|consensus
Probab=100.00 E-value=8.3e-86 Score=767.04 Aligned_cols=512 Identities=28% Similarity=0.375 Sum_probs=455.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHhhHHHHHHHHHHHHHHH
Q psy5743 123 LSLLLMLVFVVGACCNFGRVYLMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDG 202 (644)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~sr~~~D~~~i~~~~~~~~~~~ 202 (644)
+.+++.++.+...++..++.+.....+.+....++..+++++++.|+.||+..++|.|+||+++|++.+++.++..+..+
T Consensus 860 ~~~vY~~l~~~~~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFdtTP~GRILNRFSkD~~~vD~~Lp~~~~~~ 939 (1381)
T KOG0054|consen 860 YLGVYALLGVASSLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFDTTPTGRILNRFSKDIDTVDVLLPFTLEFF 939 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhcCCCCccchhhhcccchHHHHHhhHHHHHHH
Confidence 44455566666777788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHHH
Q psy5743 203 LRSTVMVSAGVSMMFIISSKLALISLIIVPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLE 282 (644)
Q Consensus 203 ~~~~~~~i~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~ 282 (644)
+...+.+++.++++.+..|+..++++.+.++++.+..++.+..|+..+-....++...+++.|++.|+.+||+|+.++++
T Consensus 940 ~~~~~~~l~~~~vi~~~~P~fli~~~pl~v~~~~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~rf 1019 (1381)
T KOG0054|consen 940 LQSLLNVLGILVVISYVTPWFLIAIIPLGVIYYFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGKEERF 1019 (1381)
T ss_pred HHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeeeccccHHH
Confidence 99999999999999999999998888888888888899988889998888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 283 MSHFNAKMDDLFELAKKEALAKGVFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYS 362 (644)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~~t~g~l~a~~~~~~~~~~~l~~l~~~~~ 362 (644)
.+++....+...+...-..-.+-++..-..+++++....+..+... ...+.++.|.+...++|...+...+..+.....
T Consensus 1020 ~~~~~~~~D~~~~~~f~~~~a~RWla~Rle~ig~~~v~~~al~~vl-~~~~~~~~g~vGLslsyal~lt~~l~~~vR~~~ 1098 (1381)
T KOG0054|consen 1020 IQENDELIDENSRAFFLSISANRWLAVRLELLGNLVVLIAALFAVL-LPSGLISPGLVGLSLSYALQLTGLLQWLVRQSS 1098 (1381)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988887766655444334444444445544444333333222 122227899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcc---CCCCCccCCCCCccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCC
Q psy5743 363 ELNKGLGACHRLWEIMEREPLIS---TSGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGS 439 (644)
Q Consensus 363 ~~~~~~~s~~Rl~~~l~~~~~~~---~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGs 439 (644)
++...++|.||+.|+.+.|+|.+ +...+++.||..|+|+|+|++.+|.++ -++||+||||+|+|||+|+|||++||
T Consensus 1099 elEn~m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~-lp~VLk~is~~I~p~eKVGIVGRTGa 1177 (1381)
T KOG0054|consen 1099 ELENNMVSVERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRPN-LPLVLKGISFTIKPGEKVGIVGRTGA 1177 (1381)
T ss_pred HHHhcchhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCC-CcchhcCceEEEcCCceEEEeCCCCC
Confidence 99999999999999999766511 111134568999999999999999864 58999999999999999999999999
Q ss_pred cHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHh
Q psy5743 440 GKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEAN 519 (644)
Q Consensus 440 GKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~ 519 (644)
|||||+++|.|+.+|.+|+|.|||+||++++..+||++++.+||||.||+||+|.||--. .+.+|+++|+|++.|+
T Consensus 1178 GKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf----~e~sD~~IW~ALe~~~ 1253 (1381)
T KOG0054|consen 1178 GKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPF----DEYSDDEIWEALERCQ 1253 (1381)
T ss_pred CHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccccccCcc----cccCHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999999999544 4589999999999999
Q ss_pred hccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccC
Q psy5743 520 AYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHR 599 (644)
Q Consensus 520 l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHr 599 (644)
+.++|.++|.|+|++|.|+|.|+|-||||.+||||||+|+++||+|||||+++|++|+..|++.|++.++++|||.||||
T Consensus 1254 Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHR 1333 (1381)
T KOG0054|consen 1254 LKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHR 1333 (1381)
T ss_pred hHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHhhcCEEEEEeCCeEEEecChhHHhcCCCcHHHHHHHh
Q psy5743 600 LSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLMKY 640 (644)
Q Consensus 600 l~~i~~aD~Iivl~~G~ive~Gt~~eLl~~~~~~y~~l~~~ 640 (644)
++|+.++|||+|||+|+|+|.|+|++|++++++.|++++..
T Consensus 1334 l~TVmd~DrVlVld~G~v~EfdsP~~Ll~~~~S~f~~~l~~ 1374 (1381)
T KOG0054|consen 1334 LNTVMDSDRVLVLDAGRVVEFDSPAELLSDKDSLFSSLLKE 1374 (1381)
T ss_pred cchhhhcCeEEEeeCCeEeecCChHHHHhCCcchHHHHHHH
Confidence 99999999999999999999999999999888999876653
No 40
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=9.5e-85 Score=796.75 Aligned_cols=500 Identities=19% Similarity=0.292 Sum_probs=427.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 132 VVGACCNFGRVYLMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSA 211 (644)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~ 211 (644)
++..++.+++.++....+.+...++|.++++++++.|+.||++.++|+++||+++|++.+++.+...+..++..++.+++
T Consensus 936 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~ 1015 (1490)
T TIGR01271 936 DSVLALGFFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLG 1015 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455677788888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHHHHHHHHHHHH
Q psy5743 212 GVSMMFIISSKLALISLIIVPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMD 291 (644)
Q Consensus 212 ~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~ 291 (644)
.++++++++|+++++++.++++++.+..++.+..++..+......+...+++.|+++|+.+||+||+++.+.++|.+..+
T Consensus 1016 ~l~~i~~~~p~l~l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~ 1095 (1490)
T TIGR01271 1016 AIFVVSVLQPYIFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALN 1095 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHH
Confidence 99999999998876655555555566667777777778888888899999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 292 DLFELAKKEALAKGVFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGAC 371 (644)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~~t~g~l~a~~~~~~~~~~~l~~l~~~~~~~~~~~~s~ 371 (644)
...+..........+......++..+..+++.+ ..+....++.|.+..++++...+..++..+...+.++..++.+.
T Consensus 1096 ~~~~~~~~~~~~~~wl~~~~~~i~~~~~~~~~~---l~~~~~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~ 1172 (1490)
T TIGR01271 1096 LHTANWFLYLSTLRWFQMRIDIIFVFFFIAVTF---IAIGTNQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSV 1172 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 654443333332333332223322221111111 11222345666777777788888889999999999999999999
Q ss_pred HHHHHHHhcCCCccCCCC-----------------CccCCCCCccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEE
Q psy5743 372 HRLWEIMEREPLISTSGG-----------------KFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVI 434 (644)
Q Consensus 372 ~Rl~~~l~~~~~~~~~~~-----------------~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIv 434 (644)
+|+.++++.+++...... .++.++..+.|+|+||+|+|++ ..+++|+|+||+|+|||+||||
T Consensus 1173 eRi~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~-~~~~vL~~is~~I~~GekvaIv 1251 (1490)
T TIGR01271 1173 SRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTE-AGRAVLQDLSFSVEGGQRVGLL 1251 (1490)
T ss_pred HHHHHHhcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCC-CCcceeeccEEEEcCCCEEEEE
Confidence 999999977655321100 0112355678999999999985 3578999999999999999999
Q ss_pred CCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHH
Q psy5743 435 GSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHA 514 (644)
Q Consensus 435 G~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a 514 (644)
|+||||||||+++|+|+++ ++|+|+|||+|+++++.+++|++++||||||+||+|||||||..+. +.+|+++++|
T Consensus 1252 GrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~----~~tdeei~~a 1326 (1490)
T TIGR01271 1252 GRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYE----QWSDEEIWKV 1326 (1490)
T ss_pred CCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCccc----CCCHHHHHHH
Confidence 9999999999999999997 7999999999999999999999999999999999999999997653 3799999999
Q ss_pred HHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEE
Q psy5743 515 AKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVL 594 (644)
Q Consensus 515 ~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI 594 (644)
++.++++++|.++|+||||+|||+|.+|||||||||+|||||+++|+|||||||||+||.+||+.|++.|++..+++|+|
T Consensus 1327 L~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI 1406 (1490)
T TIGR01271 1327 AEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVI 1406 (1490)
T ss_pred HHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCchHHhhcCEEEEEeCCeEEEecChhHHhcCCCcHHHHHHHhh
Q psy5743 595 TIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLMKYQ 641 (644)
Q Consensus 595 ~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eLl~~~~~~y~~l~~~q 641 (644)
+||||++++.+||+|+||++|+|+|.|+|++|+++ +|.|++|++.+
T Consensus 1407 ~IaHRl~ti~~~DrIlvL~~G~ivE~g~p~~Ll~~-~~~f~~l~~~~ 1452 (1490)
T TIGR01271 1407 LSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLNE-TSLFKQAMSAA 1452 (1490)
T ss_pred EEecCHHHHHhCCEEEEEECCEEEEeCCHHHHHcC-CcHHHHHHHHh
Confidence 99999999999999999999999999999999985 79999999865
No 41
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=3.1e-84 Score=728.59 Aligned_cols=533 Identities=18% Similarity=0.199 Sum_probs=449.4
Q ss_pred HHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 65 ELKKLFTLAK-SEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVY 143 (644)
Q Consensus 65 ~~~~l~~~~~-~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 143 (644)
.+++++++++ ++|+.++++++++++.++..++.|++++.++|....... ..+ .+++++.++..++.++..+
T Consensus 4 ~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~----~~~----~~~~~~~~~~~~~~~~~~~ 75 (555)
T TIGR01194 4 AIGEILALLRSPFPAITAFSIALGLAGGLAIIALLASINNAIHEENFLGQ----GSL----FSFGGLCLLALLFRIGADI 75 (555)
T ss_pred hHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc----hHH----HHHHHHHHHHHHHHHHHHH
Confidence 4678888889 999999999999999999999999999988874321110 111 1123344455677888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 144 LMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKL 223 (644)
Q Consensus 144 ~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l 223 (644)
.....+.++..++|.++|+|++++|+.+|+++++|++++|+++|++.+++++. .+.+.+.++++++++++++++++|.+
T Consensus 76 ~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~G~l~srl~~Dv~~i~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~L 154 (555)
T TIGR01194 76 FPAYAGMHIIANLRIALCEKILGAPIEEIDRRGAHNLIPLLTHDIDQINAFLF-IFPPIAIALAIFFFCIAYLAYLSVPM 154 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHhcCcchhhHHHhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 99999999999999999999999999999999999999999999999999886 47788888888888889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchH--HHHHHHHHHHHHHHHHHHHHH
Q psy5743 224 ALISLIIVPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEK--LEMSHFNAKMDDLFELAKKEA 301 (644)
Q Consensus 224 ~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~--~~~~~~~~~~~~~~~~~~~~~ 301 (644)
++++++++|+.+++..++.++.++...+..+..++.++.+.|.++|++++|+|+.++ ...+++.+..++..+...+..
T Consensus 155 ~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (555)
T TIGR01194 155 FAITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIEI 234 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 999988888888888888888888888889999999999999999999999999954 556788888877777666555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy5743 302 LAKGVFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMERE 381 (644)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~~t~g~l~a~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~Rl~~~l~~~ 381 (644)
+.......+..++..+...+++++|++. |.+|+|.++++..+...+..|+..+.+.+..++++.++.+|+.++++.+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~ 311 (555)
T TIGR01194 235 LIFIAAENFGQLLFFLLIGCALFAAAMF---ASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERF 311 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4444433433333333333344444443 7999999999999999999999999999999999999999999998632
Q ss_pred CCc-cC---CC-CCc---cCCCCCccEEEEEEEEEcCCCC--CCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhcc
Q psy5743 382 PLI-ST---SG-GKF---FSHSLKGEIDFNNIRFSYPSRP--DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 382 ~~~-~~---~~-~~~---~~~~~~~~I~~~~vsf~Y~~~~--~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
+++ +. +. ... +.....+.|+++||+|+|++.. ++++|+|+||++++||++|||||||||||||+++|+|+
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~ 391 (555)
T TIGR01194 312 NEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGL 391 (555)
T ss_pred ccccccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 211 10 00 000 1111235799999999997531 24699999999999999999999999999999999999
Q ss_pred CCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCc
Q psy5743 452 YDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGF 531 (644)
Q Consensus 452 ~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl 531 (644)
|+|++|+|.+||+|+++++.+++|+++++|+||+++|++|+++|+ .|+ +++++++++++.+++++++.++|+||
T Consensus 392 ~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~---~~~---~~~~~~~~~~~~~~l~~~~~~lp~g~ 465 (555)
T TIGR01194 392 YIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE---GEH---ASLDNAQQYLQRLEIADKVKIEDGGF 465 (555)
T ss_pred CCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc---ccc---hhHHHHHHHHHHcCCchhhccccccc
Confidence 999999999999999999999999999999999999999999995 343 78999999999999999999999999
Q ss_pred cccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHH-H-cCCceEEEEccCchHHhhcCEE
Q psy5743 532 DTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEK-L-IEGKTVLTIAHRLSTIRKSNQI 609 (644)
Q Consensus 532 ~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~-~-~~~~TvI~IaHrl~~i~~aD~I 609 (644)
||. .+|||||||||+||||++++|+|||||||||+||+++|+.+.+.+.+ . .+++|+|+||||+++++.||+|
T Consensus 466 ~t~-----~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i 540 (555)
T TIGR01194 466 STT-----TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQI 540 (555)
T ss_pred CCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEE
Confidence 995 88999999999999999999999999999999999999999988743 3 4689999999999999999999
Q ss_pred EEEeCCeEEEe
Q psy5743 610 CVLDKGKIVEI 620 (644)
Q Consensus 610 ivl~~G~ive~ 620 (644)
++|++|+++|.
T Consensus 541 ~~l~~G~i~~~ 551 (555)
T TIGR01194 541 IKLAAGCIVKD 551 (555)
T ss_pred EEEECCEEEEe
Confidence 99999999874
No 42
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=2e-78 Score=681.39 Aligned_cols=528 Identities=17% Similarity=0.236 Sum_probs=419.7
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 69 LFTLAKSEKRKLTGAVCLLLVSSSITMA-VPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVYLMNV 147 (644)
Q Consensus 69 l~~~~~~~~~~l~~~~~~~~~~~~~~~~-~p~~~~~~id~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (644)
++.+++++++.++..++++++.+++.++ .|++.++++|.+... . ..+..+.++ .++..+..+++.+....
T Consensus 4 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~lid~~~~~-~----~~~~~~~~~----~~~~~~~~~~~~~~~~~ 74 (547)
T PRK10522 4 LRLVWRQYRWPFISVMALSLASAALGIGLIAFINQRLIETADTS-L----LVLPEFLGL----LLLLMAVTLGSQLALTT 74 (547)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-c----hHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 4566788999999999999998888877 478888999865321 1 111111111 12223466788888999
Q ss_pred HHHHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 148 SAQSITKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLALIS 227 (644)
Q Consensus 148 ~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~ 227 (644)
.+.++..++|.++|++++++|+++|+++++|++++|+++|++.+..++. .+..++.++++++++++++++++|.+++++
T Consensus 75 ~~~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~~~i~~~~~l~~~~~~l~li~ 153 (547)
T PRK10522 75 LGHHFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFV-RLPELVQGIILTLGSAAYLAWLSPKMLLVT 153 (547)
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 9999999999999999999999999999999999999999999998765 567788888888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCch---HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 228 LIIVPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQE---KLEMSHFNAKMDDLFELAKKEALAK 304 (644)
Q Consensus 228 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e---~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (644)
++++|+.+++..++.++.++..++..+..++.++.+.|.++|+++++ ++.+ +.+.++|.+..++..+...+.....
T Consensus 154 l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (547)
T PRK10522 154 AIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEPDAQEYRHHIIRADTFH 232 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhHHHHHHHhhhHHHHHHH
Confidence 99999988888899999999999999999999999999999999996 4433 3556777777777665555544433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q psy5743 305 GVFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMEREPLI 384 (644)
Q Consensus 305 ~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~~t~g~l~a~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~Rl~~~l~~~~~~ 384 (644)
........+...+...+.+++++.. +..+.+.+.++..+...+..|+..+...+..++.+..+.+|+.++++.+++.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~~~ 309 (547)
T PRK10522 233 LSAVNWSNIMMLGAIGLVFYMANSL---GWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLALAPYKA 309 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh---hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 3333222222212122222222221 2234444444444455567899999999999999999999999997654322
Q ss_pred cCCCCCccCCCCCccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCc
Q psy5743 385 STSGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGV 464 (644)
Q Consensus 385 ~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~ 464 (644)
+.... .+ .+..+.|+++||+|+|++ ++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|.+||+
T Consensus 310 ~~~~~-~~-~~~~~~i~~~~v~f~y~~--~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~ 385 (547)
T PRK10522 310 EFPRP-QA-FPDWQTLELRNVTFAYQD--NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGK 385 (547)
T ss_pred ccccc-cc-cCcCceEEEEEEEEEeCC--CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCE
Confidence 11111 11 112347999999999984 357999999999999999999999999999999999999999999999999
Q ss_pred cCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCCh
Q psy5743 465 DIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSG 544 (644)
Q Consensus 465 ~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSG 544 (644)
|+++++.+++|++++||+||+++|++|++|| + ++ .++++++++++.+++.+++. .|+|. .+|.+|||
T Consensus 386 ~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~-~~---~~~~~~~~~~~~~~l~~~~~-~~~~~-----~~G~~LSg 452 (547)
T PRK10522 386 PVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---G-KP---ANPALVEKWLERLKMAHKLE-LEDGR-----ISNLKLSK 452 (547)
T ss_pred ECCCCCHHHHhhheEEEecChhHHHHhhccc---c-Cc---hHHHHHHHHHHHcCCchhhh-ccccC-----CCCCCCCH
Confidence 9999999999999999999999999999999 3 33 78888988888888776654 24442 25899999
Q ss_pred hHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc--CCceEEEEccCchHHhhcCEEEEEeCCeEEEe-c
Q psy5743 545 GQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI--EGKTVLTIAHRLSTIRKSNQICVLDKGKIVEI-G 621 (644)
Q Consensus 545 GQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~--~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~-G 621 (644)
||||||+||||++++|+|||||||||+||+++|+.+.+.+.+.. +++|+|+||||+++++.||+|++|++|+++|. |
T Consensus 453 Gq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e~~~ 532 (547)
T PRK10522 453 GQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSELTG 532 (547)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEEEecC
Confidence 99999999999999999999999999999999999999997654 48999999999999999999999999999987 5
Q ss_pred ChhHHh
Q psy5743 622 SYAHLI 627 (644)
Q Consensus 622 t~~eLl 627 (644)
++.+-.
T Consensus 533 ~~~~~~ 538 (547)
T PRK10522 533 EERDAA 538 (547)
T ss_pred Cchhhh
Confidence 665543
No 43
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=1.2e-77 Score=736.49 Aligned_cols=548 Identities=19% Similarity=0.244 Sum_probs=458.1
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 70 FTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVYLMNVSA 149 (644)
Q Consensus 70 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (644)
+.+++.+++.++.++++.++..++.++.|++++.++|.+....... ...+.++++++++.++.+++.....+...+.+
T Consensus 309 ~~l~~~~~~~~l~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (1522)
T TIGR00957 309 KVLYKTFGPYFLMSFCFKAIHDLMMFIGPQILSLLIRFVNDPMAPD--WQGYFYTGLLFVCACLQTLILHQYFHICFVSG 386 (1522)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445678888988999999999999999999999999875432211 11122333344444455555555566788899
Q ss_pred HHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 150 QSITKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLALISLI 229 (644)
Q Consensus 150 ~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~ 229 (644)
.++...++..+|+|+++++..++++.++|+++|++++|++++.++. ..++.++..++.+++++++++..-.+.++++++
T Consensus 387 ~~ir~~L~~~iy~K~L~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~-~~~~~~~~~~~~i~~~~~ll~~~~g~~~l~~l~ 465 (1522)
T TIGR00957 387 MRIKTAVMGAVYRKALVITNSARKSSTVGEIVNLMSVDAQRFMDLA-TYINMIWSAPLQVILALYFLWLNLGPSVLAGVA 465 (1522)
T ss_pred HHHHHHHHHHHHHHHHhCChhhcCCCCHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999854 678888888888777777666544556667777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 230 IVPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAKGVFFG 309 (644)
Q Consensus 230 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (644)
++++++++..++.++.++.+++..+..+++.+.+.|.++|+++||+|+||+.+.+++.+..++..+...+..........
T Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~ 545 (1522)
T TIGR00957 466 VMVLMVPLNAVMAMKTKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYLHAVGTF 545 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77778888888999999999999999999999999999999999999999999999999888877766555554433322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHc--CCcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCC
Q psy5743 310 FTGLSGNAIILSVLYYGGVMVSY--ETITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMEREPLISTS 387 (644)
Q Consensus 310 ~~~~~~~~~~~~vl~~g~~~v~~--g~~t~g~l~a~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~Rl~~~l~~~~~~~~~ 387 (644)
.. .. ....+.++.++++.+.. +.++.+.+++.+.++..+..|+..++..+..++++.++++|+.++++.+++++..
T Consensus 546 ~~-~~-~~~~~~~~~f~~~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~ 623 (1522)
T TIGR00957 546 TW-VC-TPFLVALITFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEPDS 623 (1522)
T ss_pred HH-HH-HHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccc
Confidence 21 11 12223334456666663 5789999999999999999999999999999999999999999999866542221
Q ss_pred CCCccCC-CCCccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccC
Q psy5743 388 GGKFFSH-SLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDI 466 (644)
Q Consensus 388 ~~~~~~~-~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i 466 (644)
....... ...+.|+++|++|+|++ .++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||
T Consensus 624 ~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g--- 699 (1522)
T TIGR00957 624 IERRTIKPGEGNSITVHNATFTWAR-DLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG--- 699 (1522)
T ss_pred ccccccCCCCCCcEEEEEeEEEcCC-CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC---
Confidence 1110111 11236999999999975 246799999999999999999999999999999999999999999999998
Q ss_pred CCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhH
Q psy5743 467 KELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQ 546 (644)
Q Consensus 467 ~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQ 546 (644)
+|+||||+||+|++||+|||.+|.+ .++++..++++.+++.+++..+|+|++|.+||+|.+|||||
T Consensus 700 ----------~i~yv~Q~~~l~~~Ti~eNI~~g~~----~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQ 765 (1522)
T TIGR00957 700 ----------SVAYVPQQAWIQNDSLRENILFGKA----LNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQ 765 (1522)
T ss_pred ----------EEEEEcCCccccCCcHHHHhhcCCc----cCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHH
Confidence 7999999999999999999999965 57888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHH---HcCCceEEEEccCchHHhhcCEEEEEeCCeEEEecCh
Q psy5743 547 KQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEK---LIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSY 623 (644)
Q Consensus 547 kQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~---~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~ 623 (644)
||||+||||+|++|+|++||||||+||+++++.+.+.+.+ ..+++|+|+|||+++.++.||+|++|++|+|++.|+|
T Consensus 766 kqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~ 845 (1522)
T TIGR00957 766 KQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSY 845 (1522)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEeeCCH
Confidence 9999999999999999999999999999999999999853 4578999999999999999999999999999999999
Q ss_pred hHHhcCCCcHHHHHHHhh
Q psy5743 624 AHLIKNPNSMFNKLMKYQ 641 (644)
Q Consensus 624 ~eLl~~~~~~y~~l~~~q 641 (644)
+|++++ ++.|+++++.+
T Consensus 846 ~~l~~~-~~~~~~l~~~~ 862 (1522)
T TIGR00957 846 QELLQR-DGAFAEFLRTY 862 (1522)
T ss_pred HHHHhc-chhHHHHHHhh
Confidence 999986 68899887643
No 44
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=2.9e-74 Score=704.52 Aligned_cols=541 Identities=21% Similarity=0.294 Sum_probs=459.8
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 70 FTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVYLMNVSA 149 (644)
Q Consensus 70 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (644)
+..++.+++.++..+++.++..++.++.|++++.+++++....... ....+.++++++++.++..++.....|...+.+
T Consensus 72 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~ 150 (1490)
T TIGR01271 72 NALRRCFFWRFVFYGILLYFGEATKAVQPLLLGRIIASYDPFNAPE-REIAYYLALGLCLLFIVRTLLLHPAIFGLHHLG 150 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345677888888888888899999999999999999874221111 112233444555556666677777778888899
Q ss_pred HHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 150 QSITKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLALISLI 229 (644)
Q Consensus 150 ~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~ 229 (644)
.++...+...+|+|+++++...+++.++|+++|++++|++++.+.+. .++.+|..++.+++++++++...++.+++.++
T Consensus 151 ~~~r~~L~~~iy~K~L~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~-~~~~~~~~pi~i~~~~~lL~~~~G~~~l~~l~ 229 (1490)
T TIGR01271 151 MQMRIALFSLIYKKTLKLSSRVLDKISTGQLVSLLSNNLNKFDEGLA-LAHFVWIAPLQVILLMGLIWELLEVNGFCGLG 229 (1490)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHhcCCCHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999765 55777888888888888888888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 230 IVPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAKGVFFG 309 (644)
Q Consensus 230 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (644)
++++++++..++.+++.+.+++..+..+++.+.+.|.++||++||+|+||+.+.+++.+..++..+...+..........
T Consensus 230 v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~~~~~~~~~~~~ 309 (1490)
T TIGR01271 230 FLILLALFQACLGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAYLRYFYSS 309 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998888877777666655433333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcCHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCC
Q psy5743 310 FTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISI-GGLSNFYSELNKGLGACHRLWEIMEREPLISTSG 388 (644)
Q Consensus 310 ~~~~~~~~~~~~vl~~g~~~v~~g~~t~g~l~a~~~~~~~~~~~l-~~l~~~~~~~~~~~~s~~Rl~~~l~~~~~~~~~~ 388 (644)
+..+ ....+.++.++++.+..+ ++++.++++++++..+..|+ ..++..+..+.++.++++||.+++..++.....
T Consensus 310 ~~~~--~~~~~~~~~f~~y~~~~~-~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~~~~~- 385 (1490)
T TIGR01271 310 AFFF--SGFFVVFLSVVPYALIKG-IILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYKTLE- 385 (1490)
T ss_pred HHHH--HHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccc-
Confidence 3222 223345566677776654 68999999999999998887 479999999999999999999999865432111
Q ss_pred CCccCCCCCccEEEEEEEEEcCCCC-------------------------------CCccccceeEEEeCCCEEEEECCC
Q psy5743 389 GKFFSHSLKGEIDFNNIRFSYPSRP-------------------------------DAVILNDLSLKIQSGSMTSVIGSS 437 (644)
Q Consensus 389 ~~~~~~~~~~~I~~~~vsf~Y~~~~-------------------------------~~~vL~~isl~i~~G~~vaIvG~S 437 (644)
. ......|+++|++|.|+... .+++|+|+||+|++|++++|+||+
T Consensus 386 ~----~~~~~~i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~~~I~G~~ 461 (1490)
T TIGR01271 386 Y----NLTTTEVEMVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGST 461 (1490)
T ss_pred c----cCCCCceEEecceEecCCccccccccccccccccccccccccccccccccccCcceeeeEEEECCCCEEEEECCC
Confidence 0 11223599999999996310 146899999999999999999999
Q ss_pred CCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHH
Q psy5743 438 GSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKE 517 (644)
Q Consensus 438 GsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~ 517 (644)
|||||||+++|+|+++|++|+|.++| +|+||+|+||+|++||+|||+||.+ .++++..++++.
T Consensus 462 GsGKSTLl~~l~G~~~~~~G~i~~~g-------------~iayv~Q~~~l~~~Ti~eNI~~g~~----~~~~~~~~~~~~ 524 (1490)
T TIGR01271 462 GSGKSSLLMMIMGELEPSEGKIKHSG-------------RISFSPQTSWIMPGTIKDNIIFGLS----YDEYRYTSVIKA 524 (1490)
T ss_pred CCCHHHHHHHHhCCCCCCCceEEECC-------------EEEEEeCCCccCCccHHHHHHhccc----cchHHHHHHHHH
Confidence 99999999999999999999999999 7999999999999999999999954 567788889999
Q ss_pred HhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHH-HHHHHcCCceEEEE
Q psy5743 518 ANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQS-AIEKLIEGKTVLTI 596 (644)
Q Consensus 518 a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~-~l~~~~~~~TvI~I 596 (644)
+++.+++..+|+|++|.|||+|.+|||||||||+||||+|++|+|+|||||||+||+++++.+.+ ++.++.+++|+|+|
T Consensus 525 ~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilv 604 (1490)
T TIGR01271 525 CQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILV 604 (1490)
T ss_pred HhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999997 46777789999999
Q ss_pred ccCchHHhhcCEEEEEeCCeEEEecChhHHhcCCCcHHHHHH
Q psy5743 597 AHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLM 638 (644)
Q Consensus 597 aHrl~~i~~aD~Iivl~~G~ive~Gt~~eLl~~~~~~y~~l~ 638 (644)
||+++.+..||+|++|++|+|++.|+|+++.+. ++.|.+.+
T Consensus 605 tH~~~~~~~ad~ii~l~~g~i~~~g~~~~l~~~-~~~~~~~~ 645 (1490)
T TIGR01271 605 TSKLEHLKKADKILLLHEGVCYFYGTFSELQAK-RPDFSSLL 645 (1490)
T ss_pred eCChHHHHhCCEEEEEECCEEEEEcCHHHHHhc-ChHHHHHH
Confidence 999999999999999999999999999999875 56676665
No 45
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=7.1e-74 Score=653.36 Aligned_cols=533 Identities=16% Similarity=0.167 Sum_probs=449.3
Q ss_pred HHHHHHHHHhhhhhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 64 SELKKLFTLAKSEKR-----KLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCN 138 (644)
Q Consensus 64 ~~~~~l~~~~~~~~~-----~l~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 138 (644)
..+++++++++|+|+ .++..+++.++.+++.+..|++.+.++|.+...+...+...+..+.+++++..++..+..
T Consensus 77 ~~~~~l~~~~~p~~~~~~~~~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~~~~~~~~~ 156 (659)
T TIGR00954 77 GKLDFLLKILIPRVFCKETGLLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPASFINSAIK 156 (659)
T ss_pred HHHHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677888888887 577778888888999999999999999998765433333323344445555666677778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 139 FGRVYLMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFI 218 (644)
Q Consensus 139 ~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~ 218 (644)
++..++......++...++..+|++....+..+|++ ++|++.+|+++|++.+.+.+...+..++..++.++++++.++.
T Consensus 157 ~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~d~-~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~ 235 (659)
T TIGR00954 157 YLLKELKLRFRVRLTRYLYSKYLSGFTFYKVSNLDS-RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLT 235 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCceEEeccCCC-CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888899999998888888888886 7899999999999999999999999999999888888887775
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHHHHHHHHHHHHHHHHHH
Q psy5743 219 -ISSKLALISLIIVPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELA 297 (644)
Q Consensus 219 -~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~ 297 (644)
.+|.+++++++..|+..++.+++.+++.+..++..+..++..+.+.|.++|+++||.|+.|+.+.++|.+..++..+..
T Consensus 236 ~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~ 315 (659)
T TIGR00954 236 ALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHL 315 (659)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH-c----CCcCHhHHHH-HHHH---HHHHHHHHHHHHHHHHHHHH
Q psy5743 298 KKEALAKGVFFGFTGLSGNA--IILSVLYYGGVMVS-Y----ETITVGNLSS-FLLY---AAYIGISIGGLSNFYSELNK 366 (644)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~--~~~~vl~~g~~~v~-~----g~~t~g~l~a-~~~~---~~~~~~~l~~l~~~~~~~~~ 366 (644)
.+..+....+..+..++... ..+..++.|...+. . |.+|+|.+++ |..+ +..+..|+..+.+.+.++++
T Consensus 316 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~ 395 (659)
T TIGR00954 316 NLIIKFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTR 395 (659)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888888888877766542 23333333442332 2 7899998776 5555 56678999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCccC---------C-CC-------------CccCCCCCccEEEEEEEEEcCCCCCCccccceeE
Q psy5743 367 GLGACHRLWEIMEREPLIST---------S-GG-------------KFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSL 423 (644)
Q Consensus 367 ~~~s~~Rl~~~l~~~~~~~~---------~-~~-------------~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl 423 (644)
+.++.+|+.++++.+++... . .+ ........+.|+++||+|+|++ ++++|+|+||
T Consensus 396 ~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~--~~~il~~isl 473 (659)
T TIGR00954 396 LAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPN--GDVLIESLSF 473 (659)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCC--CCeeeecceE
Confidence 99999999999975432110 0 00 0000112346999999999974 3479999999
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCC-
Q psy5743 424 KIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVND- 502 (644)
Q Consensus 424 ~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~- 502 (644)
+|++||+++|+||||||||||+++|+|+++|++|+|.+++ |++++||||+|++|++|++|||.++...
T Consensus 474 ~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~eni~~~~~~~ 542 (659)
T TIGR00954 474 EVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDSSE 542 (659)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHHHHHhcCCChh
Confidence 9999999999999999999999999999999999999875 5689999999999999999999997421
Q ss_pred ---CCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHH
Q psy5743 503 ---SSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYL 579 (644)
Q Consensus 503 ---~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~ 579 (644)
....++++++++++.+++++++.+ |.||||..+ .+.+||||||||++||||++++|+++|||||||+||+++++.
T Consensus 543 ~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~ 620 (659)
T TIGR00954 543 DMKRRGLSDKDLEQILDNVQLTHILER-EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGY 620 (659)
T ss_pred hhhccCCCHHHHHHHHHHcCCHHHHhh-cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHH
Confidence 012578899999999999999877 999999987 467999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeC
Q psy5743 580 VQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDK 614 (644)
Q Consensus 580 i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~ 614 (644)
+.+.+++. ++|+|+||||+++++.||+|++|+.
T Consensus 621 l~~~l~~~--~~tvI~isH~~~~~~~~d~il~l~~ 653 (659)
T TIGR00954 621 MYRLCREF--GITLFSVSHRKSLWKYHEYLLYMDG 653 (659)
T ss_pred HHHHHHHc--CCEEEEEeCchHHHHhCCEEEEEeC
Confidence 99999875 8999999999999999999999973
No 46
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=2.3e-72 Score=687.92 Aligned_cols=552 Identities=20% Similarity=0.254 Sum_probs=465.8
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 65 ELKKLFTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVYL 144 (644)
Q Consensus 65 ~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 144 (644)
.+.-++..++.+++.++..+++.++..++.++.|++++.+++.+.... .. ......++++++++.++..++...+.+.
T Consensus 231 ~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~l~~P~ll~~~v~~l~~~~-~~-~~~g~~l~~~l~~~~~~~~~~~~~~~~~ 308 (1560)
T PTZ00243 231 RLSLLRTLFAALPYYVWWQIPFKLLSDVCTLTLPVLLKYFVKFLDADN-AT-WGRGLGLVLTLFLTQLIQSVCLHRFYYI 308 (1560)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-cc-hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666788999999999999999999999999999999764322 11 1222334444555566677777777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCChhhhh--ccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 145 MNVSAQSITKKLRERLFGSIISQETAYFD--KHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSK 222 (644)
Q Consensus 145 ~~~~~~~~~~~lr~~~~~~ll~~~~~~~~--~~~~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~ 222 (644)
..+.+.++...+...+|+|+++++...+. +.++|+++|++++|++++.+++ ..++.++..++.+++++++++.+.++
T Consensus 309 ~~r~~~~~r~~L~~~if~K~l~ls~~~~~~~~~~~G~i~nl~s~Dv~~i~~~~-~~~~~l~~~Pl~li~~~~lL~~~lG~ 387 (1560)
T PTZ00243 309 SIRCGLQYRSALNALIFEKCFTISSKSLAQPDMNTGRIINMMSTDVERINSFM-QYCMYLWSSPMVLLLSILLLSRLVGW 387 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCChhhhCCCCCCHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 99999999999999999999999988776 5689999999999999999987 56788899999999999999988899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 223 LALISLIIVPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEAL 302 (644)
Q Consensus 223 l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 302 (644)
.+++.++++++.+++..++.++....+++..+..+++.+.+.|.++||++||.++||+.+.+++.+..++..+...+...
T Consensus 388 ~al~gv~vl~v~~pl~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~~R~~El~~l~~~~~ 467 (1560)
T PTZ00243 388 CALMAVAVLLVTLPLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRARELRYLRDVQL 467 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998888777766666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy5743 303 AKGVFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMEREP 382 (644)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~~t~g~l~a~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~Rl~~~l~~~~ 382 (644)
...+...+......+ +.++.++++.+..|.+|++.+++++.+++.+..|+..++..+..+.++.++++||.+|++.++
T Consensus 468 ~~~~~~~~~~~~p~l--~~~~~f~~y~~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS~~RI~~fL~~~e 545 (1560)
T PTZ00243 468 ARVATSFVNNATPTL--MIAVVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVSIKRISTFLECDN 545 (1560)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 665554444333222 233356778888999999999999999999999999999999999999999999999997654
Q ss_pred Ccc----C--C---------C--C----------------Ccc-------------------------CCCCCccEEEEE
Q psy5743 383 LIS----T--S---------G--G----------------KFF-------------------------SHSLKGEIDFNN 404 (644)
Q Consensus 383 ~~~----~--~---------~--~----------------~~~-------------------------~~~~~~~I~~~~ 404 (644)
... + . . . +.+ .....+.+.++|
T Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (1560)
T PTZ00243 546 ATCSTVQDMEEYWREQREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTKRHPSPSVVVED 625 (1560)
T ss_pred ccccccccchhhcccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccccccc
Confidence 110 0 0 0 0 000 001123577888
Q ss_pred EEEEcCCC-------------------------------------CCCccccceeEEEeCCCEEEEECCCCCcHHHHHHH
Q psy5743 405 IRFSYPSR-------------------------------------PDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAML 447 (644)
Q Consensus 405 vsf~Y~~~-------------------------------------~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~l 447 (644)
++|+++.. .++++|+|+||+|++|++++|+||||||||||+++
T Consensus 626 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~ 705 (1560)
T PTZ00243 626 TDYGSPSSASRHIVEGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQS 705 (1560)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHH
Confidence 88876410 12468999999999999999999999999999999
Q ss_pred HhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhh
Q psy5743 448 LLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDF 527 (644)
Q Consensus 448 L~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~l 527 (644)
|+|+++|++|+|.+++ +|+||+|+|++|++||+|||.++.+ .+++++.++++.++++++++.+
T Consensus 706 i~G~~~~~~G~i~~~~-------------~i~yv~Q~~~l~~~Tv~enI~~~~~----~~~~~~~~~~~~~~l~~~l~~l 768 (1560)
T PTZ00243 706 LLSQFEISEGRVWAER-------------SIAYVPQQAWIMNATVRGNILFFDE----EDAARLADAVRVSQLEADLAQL 768 (1560)
T ss_pred HhcCCCCCCcEEEECC-------------eEEEEeCCCccCCCcHHHHHHcCCh----hhHHHHHHHHHHhhhHHHHHHh
Confidence 9999999999998753 8999999999999999999999864 4677888999999999999999
Q ss_pred hcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHH-HHHHcCCceEEEEccCchHHhhc
Q psy5743 528 KNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSA-IEKLIEGKTVLTIAHRLSTIRKS 606 (644)
Q Consensus 528 p~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~-l~~~~~~~TvI~IaHrl~~i~~a 606 (644)
|+|++|.+|++|.+|||||||||+||||+|++|+|||||||||+||+++++.+.+. +....+++|+|+|||+++.+..|
T Consensus 769 ~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~a 848 (1560)
T PTZ00243 769 GGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRA 848 (1560)
T ss_pred hccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhC
Confidence 99999999999999999999999999999999999999999999999988777654 44555789999999999999999
Q ss_pred CEEEEEeCCeEEEecChhHHhcCCCcHHHHHHHh
Q psy5743 607 NQICVLDKGKIVEIGSYAHLIKNPNSMFNKLMKY 640 (644)
Q Consensus 607 D~Iivl~~G~ive~Gt~~eLl~~~~~~y~~l~~~ 640 (644)
|+|++|++|++++.|+|+|+++. +.|.++...
T Consensus 849 d~ii~l~~G~i~~~G~~~~l~~~--~~~~~~~~~ 880 (1560)
T PTZ00243 849 DYVVALGDGRVEFSGSSADFMRT--SLYATLAAE 880 (1560)
T ss_pred CEEEEEECCEEEEecCHHHHHhC--hHHHHHHHh
Confidence 99999999999999999999864 568877654
No 47
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=4e-57 Score=461.66 Aligned_cols=237 Identities=27% Similarity=0.460 Sum_probs=223.0
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcc
Q psy5743 398 GEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQ 477 (644)
Q Consensus 398 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~ 477 (644)
+.|+++|++|+|++. ++++|+|+||+|++||+++|+|+||||||||+++|+|+++ ++|+|++||.++..++...+|+.
T Consensus 1 g~i~~~nls~~~~~~-~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~ 78 (275)
T cd03289 1 GQMTVKDLTAKYTEG-GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKA 78 (275)
T ss_pred CeEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhh
Confidence 369999999999742 4579999999999999999999999999999999999997 78999999999999999999999
Q ss_pred eEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHc
Q psy5743 478 IGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALI 557 (644)
Q Consensus 478 i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll 557 (644)
++||||+|.+|++|++||+....+ .++++++++++.+++.+++.++|.||+|.++|+|.+||||||||++||||++
T Consensus 79 i~~v~q~~~lf~~tv~~nl~~~~~----~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall 154 (275)
T cd03289 79 FGVIPQKVFIFSGTFRKNLDPYGK----WSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVL 154 (275)
T ss_pred EEEECCCcccchhhHHHHhhhccC----CCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999975432 5789999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEecChhHHhcCCCcHHHHH
Q psy5743 558 KKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKL 637 (644)
Q Consensus 558 ~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eLl~~~~~~y~~l 637 (644)
++|+|++|||||++||+++++.+++.|.+..+++|+|+||||++++..||+|++|++|++++.|++++|+++ .++|+++
T Consensus 155 ~~p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~-~~~~~~~ 233 (275)
T cd03289 155 SKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNE-KSHFKQA 233 (275)
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhC-cHHHHHH
Confidence 999999999999999999999999999988788999999999999999999999999999999999999986 5888888
Q ss_pred HHhh
Q psy5743 638 MKYQ 641 (644)
Q Consensus 638 ~~~q 641 (644)
+...
T Consensus 234 ~~~~ 237 (275)
T cd03289 234 ISPS 237 (275)
T ss_pred Hhhc
Confidence 8643
No 48
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-54 Score=452.83 Aligned_cols=249 Identities=28% Similarity=0.443 Sum_probs=208.3
Q ss_pred HHHHHHHHhcCCCccCCCCCccCCCCCccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhc
Q psy5743 371 CHRLWEIMEREPLISTSGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLR 450 (644)
Q Consensus 371 ~~Rl~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g 450 (644)
..|+.+++..++..... ....++..+.|+++|++|+|++ ..+++|+|+||+|++||++||+|+||||||||+++|+|
T Consensus 54 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~nls~~y~~-~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g 130 (329)
T PRK14257 54 KAELKQFLNKKKTQVDL--LKEDFNHANVFEIRNFNFWYMN-RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQ 130 (329)
T ss_pred chhhhhccccccccccc--ccCCCCcCceEEEEeeEEEecC-CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 34676766543211100 0112345567999999999974 24579999999999999999999999999999999999
Q ss_pred cCC-----CCCcEEEECCccCC--CCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHH-----HHHHHHH
Q psy5743 451 LYD-----PQNGKILIDGVDIK--ELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDI-----IHAAKEA 518 (644)
Q Consensus 451 ~~~-----p~~G~I~idg~~i~--~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i-----~~a~~~a 518 (644)
+++ |++|+|.+||+++. ..+...+|+.++||||+|++|++|++|||.|+.+. ...++++. .++++.+
T Consensus 131 ~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~-~~~~~~~~~~~~~~~~l~~~ 209 (329)
T PRK14257 131 LNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRN-NGINDRKILEKIVEKSLKSA 209 (329)
T ss_pred cccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCCCcHHHHHHhHHHh-cCCChHHHHHHHHHHHHHHc
Confidence 997 57999999999997 44567889999999999999999999999987321 12344443 4455555
Q ss_pred hhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEcc
Q psy5743 519 NAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAH 598 (644)
Q Consensus 519 ~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaH 598 (644)
++ +.++++.++++|.+||||||||++||||++++|+|||||||||+||+++.+.+.+.|+++.+++|+|+|||
T Consensus 210 ~L-------~~~l~~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH 282 (329)
T PRK14257 210 AL-------WDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTH 282 (329)
T ss_pred CC-------cchhhhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 54 44567889999999999999999999999999999999999999999999999999999988999999999
Q ss_pred CchHHhh-cCEEEEEeCCeEEEecChhHHhcCC
Q psy5743 599 RLSTIRK-SNQICVLDKGKIVEIGSYAHLIKNP 630 (644)
Q Consensus 599 rl~~i~~-aD~Iivl~~G~ive~Gt~~eLl~~~ 630 (644)
+++++.. ||+|+||++|+|+|.|+++++...+
T Consensus 283 ~l~~i~~~~Driivl~~G~i~e~g~~~~l~~~~ 315 (329)
T PRK14257 283 SMAQAQRISDETVFFYQGWIEEAGETKTIFIHP 315 (329)
T ss_pred CHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCC
Confidence 9999987 9999999999999999999998754
No 49
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.4e-53 Score=397.52 Aligned_cols=220 Identities=35% Similarity=0.535 Sum_probs=191.9
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCC-CCChHHHhcce
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIK-ELDPMYLRSQI 478 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~-~~~~~~lr~~i 478 (644)
|+++||+.+|. +..||+|||++|++||.++|+||||||||||+++|.|+-+|++|+|.+||.++. ..+...+|+.+
T Consensus 3 i~i~~l~K~fg---~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~v 79 (240)
T COG1126 3 IEIKNLSKSFG---DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKV 79 (240)
T ss_pred EEEEeeeEEeC---CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhc
Confidence 89999999996 357999999999999999999999999999999999999999999999997773 34889999999
Q ss_pred EEEecCCCCCc-ccHHHHHhcCCCCCCCCCHH----HHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHH
Q psy5743 479 GSVSQEPTLFS-GTIYENILYGVNDSSSVTKS----DIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIA 553 (644)
Q Consensus 479 ~~V~Q~~~Lf~-gTIreNI~~g~~~~~~~~~~----~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLA 553 (644)
|+|+|+..||. -|+.||++++--.-...+.+ +-.+.++++|+.|-....| .+|||||+||+|||
T Consensus 80 GmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP-----------~qLSGGQqQRVAIA 148 (240)
T COG1126 80 GMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYP-----------AQLSGGQQQRVAIA 148 (240)
T ss_pred CeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCc-----------cccCcHHHHHHHHH
Confidence 99999999997 79999999872110112333 3344567777766665555 58999999999999
Q ss_pred HHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC-CceEEEEccCchHHhh-cCEEEEEeCCeEEEecChhHHhcCCC
Q psy5743 554 RALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE-GKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLIKNPN 631 (644)
Q Consensus 554 RAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~-~~TvI~IaHrl~~i~~-aD~Iivl~~G~ive~Gt~~eLl~~~~ 631 (644)
|||.-+|+++++||||||||++.-..+.+.+.++.+ +.|.|+|||.+...+. ||||+.||+|+|+|+|+++++..+++
T Consensus 149 RALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p~ 228 (240)
T COG1126 149 RALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNPK 228 (240)
T ss_pred HHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCCC
Confidence 999999999999999999999999999999998864 7899999999999966 89999999999999999999998755
Q ss_pred cH
Q psy5743 632 SM 633 (644)
Q Consensus 632 ~~ 633 (644)
..
T Consensus 229 ~~ 230 (240)
T COG1126 229 SE 230 (240)
T ss_pred CH
Confidence 43
No 50
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=7.2e-52 Score=417.29 Aligned_cols=236 Identities=46% Similarity=0.769 Sum_probs=219.4
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
|+++|++++|++. .+++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+|+.++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (237)
T cd03252 1 ITFEHVRFRYKPD-GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVG 79 (237)
T ss_pred CEEEEEEEecCCC-CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEE
Confidence 5789999999742 357999999999999999999999999999999999999999999999999999888888999999
Q ss_pred EEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccC
Q psy5743 480 SVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKK 559 (644)
Q Consensus 480 ~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~ 559 (644)
|++|++++|+.|++|||.++.+. .+.+++.++++..++.+++..+|.|+++.....+.+||||||||++||||++.+
T Consensus 80 ~~~q~~~~~~~tv~~nl~~~~~~---~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~ 156 (237)
T cd03252 80 VVLQENVLFNRSIRDNIALADPG---MSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHN 156 (237)
T ss_pred EEcCCchhccchHHHHhhccCCC---CCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhC
Confidence 99999999999999999987543 456777788888889999999999999999999999999999999999999999
Q ss_pred CCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEecChhHHhcCCCcHHHHHHH
Q psy5743 560 SKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLMK 639 (644)
Q Consensus 560 p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eLl~~~~~~y~~l~~ 639 (644)
|+++||||||++||+.+...+.+.|.++.+++|+|++||+++.+..||+|++|++|++++.|++++++++ .+.|..+++
T Consensus 157 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-~~~~~~~~~ 235 (237)
T cd03252 157 PRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAE-NGLYAYLYQ 235 (237)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhc-cChHHHHHh
Confidence 9999999999999999999999999998778999999999999999999999999999999999999986 688988876
Q ss_pred h
Q psy5743 640 Y 640 (644)
Q Consensus 640 ~ 640 (644)
+
T Consensus 236 ~ 236 (237)
T cd03252 236 L 236 (237)
T ss_pred c
Confidence 4
No 51
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=100.00 E-value=2.7e-48 Score=420.78 Aligned_cols=503 Identities=18% Similarity=0.206 Sum_probs=392.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q psy5743 88 LVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVYLMNVSAQSITKKLRERLFGSIISQ 167 (644)
Q Consensus 88 ~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~ 167 (644)
++++...+......+.+.|.+...+. ..+...+.++..+..+...+...+.|+......+...-+...+.++-+..
T Consensus 57 l~~v~~~v~~~~w~~~~~~aL~~~d~----~~f~~~l~~f~~ia~~~v~~~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~ 132 (604)
T COG4178 57 LLSVRGQVLLNDWNGPFYNALARRDL----AAFWQQLQVFAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDP 132 (604)
T ss_pred HHHhheeeeeHhhhhHHHHHHHHhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33334444455555666666544332 22333334444455555566777888888888888888888888888877
Q ss_pred ChhhhhccChh------HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHH
Q psy5743 168 ETAYFDKHKTG------ELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFII---------------SSKLALI 226 (644)
Q Consensus 168 ~~~~~~~~~~G------~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~---------------~~~l~li 226 (644)
. .+|.-...| ..=+|+..|+..+-+........++.++++++...++++-. ...+.++
T Consensus 133 ~-~~y~l~~~~~~~~~dNpDQRi~eDi~~~t~~t~~l~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~ 211 (604)
T COG4178 133 R-RYYRLAQAGGIGLIDNPDQRIQEDIRNFTETTLDLSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWA 211 (604)
T ss_pred C-chHHHHhcccccCCCChHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHH
Confidence 6 444433333 23489999999888887777888888888888777777733 3344444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 227 SLIIVPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAKGV 306 (644)
Q Consensus 227 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (644)
+++..+...++..+++|++-+++.+..+..+.....+.-.-++.+.|-.|+-|+.+.++.........+...+.......
T Consensus 212 ~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~~Lvrv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~ 291 (604)
T COG4178 212 VIIYAISASLLTHLIGRPLIRLNFERQKLEADFRYSLVRVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIR 291 (604)
T ss_pred HHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44445555566678899999999999999999999999999999999999999999999988888887766666555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----
Q psy5743 307 FFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMEREP---- 382 (644)
Q Consensus 307 ~~~~~~~~~~~~~~~vl~~g~~~v~~g~~t~g~l~a~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~Rl~~~l~~~~---- 382 (644)
+..+....+.+..++-+..++-....|.++.|.++.....++++...++.+.+.+..+..-.+...|+.++...-+
T Consensus 292 l~~~~~gy~~~s~v~P~li~ap~~f~g~i~~G~lmqa~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~ 371 (604)
T COG4178 292 LTWFQLGYGWLSVVLPILIAAPRYFSGQITFGGLMQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQM 371 (604)
T ss_pred hHHhhhhhhHHHHHHHHHhccHhhhcCcChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 5555444444444555666777788999999999999999999999999999999999999999999999874321
Q ss_pred --CccCCCCCccC--CCCCccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcE
Q psy5743 383 --LISTSGGKFFS--HSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGK 458 (644)
Q Consensus 383 --~~~~~~~~~~~--~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~ 458 (644)
+.+........ ...+..|+++|++..-|+. .+.++++||+++|||.+-|.||||||||||++.|.|++|--+|+
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~i~~~nl~l~~p~~--~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~ 449 (604)
T COG4178 372 DTEKPARTGRRIDFDDNADHGITLENLSLRTPDG--QTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGR 449 (604)
T ss_pred cccccCcccccccccccccceeEEeeeeEECCCC--CeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCc
Confidence 11111000000 1114579999999999863 47899999999999999999999999999999999999999999
Q ss_pred EEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCC
Q psy5743 459 ILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGER 538 (644)
Q Consensus 459 I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~ 538 (644)
|-.-.. ..+-|+||.|++-.||+||=|+|-++. +.++|+++.+++.+++|.++++++.+- +. =
T Consensus 450 I~~P~~-----------~~~lflpQ~PY~p~GtLre~l~YP~~~-~~~~d~~l~~vL~~vgL~~L~~rl~~~-~~----W 512 (604)
T COG4178 450 ISMPAD-----------SALLFLPQRPYLPQGTLREALCYPNAA-PDFSDAELVAVLHKVGLGDLAERLDEE-DR----W 512 (604)
T ss_pred eecCCC-----------CceEEecCCCCCCCccHHHHHhCCCCC-CCCChHHHHHHHHHcCcHHHHHHHhcc-Cc----H
Confidence 876521 158999999999999999999998765 238999999999999999999987532 22 2
Q ss_pred CCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeC
Q psy5743 539 GIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDK 614 (644)
Q Consensus 539 G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~ 614 (644)
..-|||||||||++||.++++|++++|||+|||||+++|..+.+.+++.+++.|+|-|+||.......++.+.+++
T Consensus 513 ~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~~l~l~~ 588 (604)
T COG4178 513 DRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHRPTLWNFHSRQLELLD 588 (604)
T ss_pred hhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEeccchhhHHHHhhheeecc
Confidence 4579999999999999999999999999999999999999999999999999999999999999998888777654
No 52
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=2.8e-51 Score=417.50 Aligned_cols=241 Identities=34% Similarity=0.544 Sum_probs=223.4
Q ss_pred CCccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHh
Q psy5743 396 LKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLR 475 (644)
Q Consensus 396 ~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr 475 (644)
..+.|+++|++++|++ .+.++|+|+||+++|||.++|+|+||||||||+++|+|+++|++|+|+++|.++.+.+...+|
T Consensus 16 ~~~~i~~~~l~~~~~~-~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 94 (257)
T cd03288 16 LGGEIKIHDLCVRYEN-NLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLR 94 (257)
T ss_pred CCceEEEEEEEEEeCC-CCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHh
Confidence 3467999999999975 235799999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHH
Q psy5743 476 SQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARA 555 (644)
Q Consensus 476 ~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARA 555 (644)
+.++||+|++.+|++|++||+.+... ..+++++++++..++.+++..+|.|++|.+++.+.+||||||||++||||
T Consensus 95 ~~i~~v~q~~~l~~~tv~~nl~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~lara 170 (257)
T cd03288 95 SRLSIILQDPILFSGSIRFNLDPECK----CTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARA 170 (257)
T ss_pred hhEEEECCCCcccccHHHHhcCcCCC----CCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHH
Confidence 99999999999999999999976421 35677888899999999999999999999999999999999999999999
Q ss_pred HccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEecChhHHhcCCCcHHH
Q psy5743 556 LIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFN 635 (644)
Q Consensus 556 ll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eLl~~~~~~y~ 635 (644)
++++|+++||||||++||++++..+.+.+++..+++|+|++||+++.+..||+|++|++|++++.|+++++.+..++.|+
T Consensus 171 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~ 250 (257)
T cd03288 171 FVRKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFA 250 (257)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccchHHH
Confidence 99999999999999999999999999999987778999999999999999999999999999999999999887677899
Q ss_pred HHHHhh
Q psy5743 636 KLMKYQ 641 (644)
Q Consensus 636 ~l~~~q 641 (644)
+++..|
T Consensus 251 ~~~~~~ 256 (257)
T cd03288 251 SLVRTD 256 (257)
T ss_pred HHHhcc
Confidence 988754
No 53
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-47 Score=385.43 Aligned_cols=521 Identities=17% Similarity=0.228 Sum_probs=382.5
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 69 LFTLAKSEKRKLTGAVCLLLVSSSITMA-VPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVYLMNV 147 (644)
Q Consensus 69 l~~~~~~~~~~l~~~~~~~~~~~~~~~~-~p~~~~~~id~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (644)
+....+++++.++..+.+++++++.... ..++.+.++. .++... ..+ ..++++.++-.+.+.+.......
T Consensus 4 ll~llr~nr~~~i~~~a~s~a~g~~g~~lLa~in~al~e----~~~~~~-~~l----~~f~~llllf~~ss~is~lg~t~ 74 (546)
T COG4615 4 LLLLLRQNRWPFISVMALSLASGALGIGLLAFINQALIE----TADTSL-LVL----PEFLGLLLLFMVSSLISQLGLTT 74 (546)
T ss_pred HHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hcccce-eeH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445688999988888877777655432 2333333333 222111 111 12222333333455666777788
Q ss_pred HHHHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 148 SAQSITKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLALIS 227 (644)
Q Consensus 148 ~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~ 227 (644)
.++.+...+|..+.+|++.-|+.-+++-+++.++.++++|+..|. +-...++.+.++.+..+++.+.+.|+||.+.++.
T Consensus 75 ~gq~~I~klr~~~~~kil~tplerier~~~~rlla~L~~Dvr~IS-f~~s~lp~~~qa~il~l~s~aYLayLSp~mf~l~ 153 (546)
T COG4615 75 LGQHFIYKLRSEFIKKILDTPLERIERLGSARLLAGLTSDVRNIS-FAFSRLPELVQAIILTLGSAAYLAYLSPKMFLLT 153 (546)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHhcccchhhhhccccccee-ehHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 899999999999999999999999999999999999999999887 5556677788888888888999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHH--HHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 228 LIIVPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKL--EMSHFNAKMDDLFELAKKEALAKG 305 (644)
Q Consensus 228 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~--~~~~~~~~~~~~~~~~~~~~~~~~ 305 (644)
++.+++.++...+...+..+..+...+..+++.+..+..+.|.+++++.....+ ..+.|....+...+ +..+.+.
T Consensus 154 vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~~~~~~~a~~~r~---~~~~~n~ 230 (546)
T COG4615 154 VVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPDAQEYRH---HIIRANT 230 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHHhhhcCcchHHHHh---hhhhhhH
Confidence 888888888888888888889999999999999999999999999998754322 12222222222222 1111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-cCCcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q psy5743 306 VFFGFTGLSGNAIILSVLYYGGVMVS-YETITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMEREPLI 384 (644)
Q Consensus 306 ~~~~~~~~~~~~~~~~vl~~g~~~v~-~g~~t~g~l~a~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~Rl~~~l~~~~~~ 384 (644)
.......+ +++....++....|+.. -+.-+.....++.+....+..|+.+....++.+.++.++++++.++-..|+..
T Consensus 231 f~~la~~~-~ni~l~~lIGlvf~lal~~~w~st~~a~tivlvlLflr~pL~s~vgilP~l~~AqvA~~kiakle~~~~~a 309 (546)
T COG4615 231 FHLLAVNW-SNIMLLGLIGLVFWLALSLGWASTNVAATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKLELAPYKA 309 (546)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHhhcCCccc
Confidence 11111111 11222222222222322 23334444555666666788899999999999999999999999986644322
Q ss_pred cCCCCCccCCCCCccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCc
Q psy5743 385 STSGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGV 464 (644)
Q Consensus 385 ~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~ 464 (644)
+-... ...|.-..|+++||.|+|++. ..-+..||++|++||.|-|+|.+||||||++++|.|+|.|++|+|++||.
T Consensus 310 -~~~~~-q~~p~~~~lelrnvrfay~~~--~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~ 385 (546)
T COG4615 310 -DFPRP-QAFPDWKTLELRNVRFAYQDN--AFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGK 385 (546)
T ss_pred -cCCCC-CcCCcccceeeeeeeeccCcc--cceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCc
Confidence 11111 111223469999999999853 25578899999999999999999999999999999999999999999999
Q ss_pred cCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCCh
Q psy5743 465 DIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSG 544 (644)
Q Consensus 465 ~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSG 544 (644)
+++.=+++++|+-++-|.-|-|||..++ | ++. .++.+.+.+.++...+..-. ++.+|--+ -..||-
T Consensus 386 pV~~e~ledYR~LfSavFsDyhLF~~ll------~-~e~-~as~q~i~~~LqrLel~~kt-sl~d~~fs-----~~kLSt 451 (546)
T COG4615 386 PVSAEQLEDYRKLFSAVFSDYHLFDQLL------G-PEG-KASPQLIEKWLQRLELAHKT-SLNDGRFS-----NLKLST 451 (546)
T ss_pred cCCCCCHHHHHHHHHHHhhhHhhhHhhh------C-Ccc-CCChHHHHHHHHHHHHhhhh-cccCCccc-----cccccc
Confidence 9999999999999999999999999753 3 331 26788887776665543221 12222222 247999
Q ss_pred hHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc--CCceEEEEccCchHHhhcCEEEEEeCCeEEEec
Q psy5743 545 GQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI--EGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIG 621 (644)
Q Consensus 545 GQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~--~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~G 621 (644)
|||.|+|+-=|++-+.||++|||=-+.=|+.=.+.+.+.+...+ .|||++.|||+-....+|||++.|++|+++|.-
T Consensus 452 GQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ADrll~~~~G~~~e~t 530 (546)
T COG4615 452 GQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSELT 530 (546)
T ss_pred chHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhhHHHHHHHhcCceeecc
Confidence 99999999999999999999999999999999988888775543 399999999999999999999999999999763
No 54
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.9e-51 Score=383.74 Aligned_cols=223 Identities=34% Similarity=0.532 Sum_probs=201.1
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCC-----cEEEECCccCCC--CC
Q psy5743 398 GEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQN-----GKILIDGVDIKE--LD 470 (644)
Q Consensus 398 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~-----G~I~idg~~i~~--~~ 470 (644)
..++++|+++.|. ++.+|+|||++|++++.+|++||||||||||++++.|+.+..+ |+|.++|+||.+ +|
T Consensus 6 ~~~~~~~l~~yYg---~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d 82 (253)
T COG1117 6 PAIEVRDLNLYYG---DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVD 82 (253)
T ss_pred ceeEecceeEEEC---chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCC
Confidence 3589999999996 4579999999999999999999999999999999999999876 999999999976 57
Q ss_pred hHHHhcceEEEecCCCCCcccHHHHHhcCCCCCC---CCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHH
Q psy5743 471 PMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSS---SVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQK 547 (644)
Q Consensus 471 ~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~---~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQk 547 (644)
.-++|++||+|+|.|--|..||+||++||-.-.. ..-||.++++++.|+|+|.+.+- +.+.+..|||||+
T Consensus 83 ~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDr-------L~~sa~~LSGGQQ 155 (253)
T COG1117 83 VVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDR-------LHKSALGLSGGQQ 155 (253)
T ss_pred HHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHH-------hhCCccCCChhHH
Confidence 9999999999999999999999999999943111 12245678899999999988642 4577889999999
Q ss_pred HHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhHH
Q psy5743 548 QRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHL 626 (644)
Q Consensus 548 QRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~eL 626 (644)
||++|||||.-+|+||+|||||||||+.+..+|.+.|.++.++-|+|+|||.+.-. +-+|+...+-.|+++|.|+-+++
T Consensus 156 QRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~i 235 (253)
T COG1117 156 QRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKI 235 (253)
T ss_pred HHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhh
Confidence 99999999999999999999999999999999999999999999999999999876 66899999999999999999999
Q ss_pred hcCC
Q psy5743 627 IKNP 630 (644)
Q Consensus 627 l~~~ 630 (644)
..++
T Consensus 236 F~~P 239 (253)
T COG1117 236 FTNP 239 (253)
T ss_pred hcCc
Confidence 8764
No 55
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.1e-51 Score=400.85 Aligned_cols=221 Identities=35% Similarity=0.561 Sum_probs=191.8
Q ss_pred EEEEEEEEEcCCC--CCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHH---H
Q psy5743 400 IDFNNIRFSYPSR--PDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMY---L 474 (644)
Q Consensus 400 I~~~~vsf~Y~~~--~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~---l 474 (644)
|+++||+..|+.. ....+|+||||+|++||+.+|+|.||+|||||++++.++-.|++|+|++||+|+..++... .
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 7999999999852 1356899999999999999999999999999999999999999999999998888887655 5
Q ss_pred hcceEEEecCCCCCc-ccHHHHHhcCCCCCCCCCHH----HHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHH
Q psy5743 475 RSQIGSVSQEPTLFS-GTIYENILYGVNDSSSVTKS----DIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQR 549 (644)
Q Consensus 475 r~~i~~V~Q~~~Lf~-gTIreNI~~g~~~~~~~~~~----~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQR 549 (644)
|++||+++|++.|++ -|+.+|++|.-+-. ..+.+ ++.+.++.+|+.|+-.+.| .+||||||||
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeia-g~~k~ei~~RV~elLelVgL~dk~~~yP-----------~qLSGGQKQR 149 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELA-GVPKAEIKQRVAELLELVGLSDKADRYP-----------AQLSGGQKQR 149 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhc-CCCHHHHHHHHHHHHHHcCChhhhccCc-----------hhcCcchhhH
Confidence 778999999999998 89999999865421 23344 4555667777766554444 7899999999
Q ss_pred HHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc--CCceEEEEccCchHHhh-cCEEEEEeCCeEEEecChhHH
Q psy5743 550 IAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI--EGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHL 626 (644)
Q Consensus 550 iaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~--~~~TvI~IaHrl~~i~~-aD~Iivl~~G~ive~Gt~~eL 626 (644)
++|||||..+|+||+.||||||||++|.+.|.+.|++.- -+-|+++|||.++.+++ |||+.||++|+++|+|+-.++
T Consensus 150 VaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~v 229 (339)
T COG1135 150 VAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEV 229 (339)
T ss_pred HHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHh
Confidence 999999999999999999999999999999999997753 37899999999999965 999999999999999999999
Q ss_pred hcCCCc
Q psy5743 627 IKNPNS 632 (644)
Q Consensus 627 l~~~~~ 632 (644)
..+++.
T Consensus 230 F~~Pk~ 235 (339)
T COG1135 230 FANPKH 235 (339)
T ss_pred hcCcch
Confidence 876543
No 56
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3e-50 Score=405.26 Aligned_cols=236 Identities=47% Similarity=0.756 Sum_probs=219.0
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
|+++|++++|++ +..+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+||.++...+...+|+.++
T Consensus 1 l~~~~l~~~~~~--~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~ 78 (236)
T cd03253 1 IEFENVTFAYDP--GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIG 78 (236)
T ss_pred CEEEEEEEEeCC--CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 478999999964 246999999999999999999999999999999999999999999999999999998889999999
Q ss_pred EEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccC
Q psy5743 480 SVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKK 559 (644)
Q Consensus 480 ~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~ 559 (644)
|++|++.+|++|++||+.++.++ .+++++.++++..++.+++..+|.|+++.+......||||||||++|||||+++
T Consensus 79 ~~~q~~~~~~~tv~~nl~~~~~~---~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~ 155 (236)
T cd03253 79 VVPQDTVLFNDTIGYNIRYGRPD---ATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKN 155 (236)
T ss_pred EECCCChhhcchHHHHHhhcCCC---CCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999998654 566778888888899999999999999999999999999999999999999999
Q ss_pred CCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEecChhHHhcCCCcHHHHHHH
Q psy5743 560 SKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLMK 639 (644)
Q Consensus 560 p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eLl~~~~~~y~~l~~ 639 (644)
|+++||||||++||+++...+.+.|.+..+++|+|++||+++.+..||++++|++|++++.|+.+++.++ .+.|..++.
T Consensus 156 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~-~~~~~~~~~ 234 (236)
T cd03253 156 PPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAK-GGLYAEMWK 234 (236)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhc-ccHHHHHHh
Confidence 9999999999999999999999999988778899999999999999999999999999999999999875 677887776
Q ss_pred hh
Q psy5743 640 YQ 641 (644)
Q Consensus 640 ~q 641 (644)
.+
T Consensus 235 ~~ 236 (236)
T cd03253 235 AQ 236 (236)
T ss_pred cC
Confidence 53
No 57
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=9.3e-51 Score=388.24 Aligned_cols=221 Identities=35% Similarity=0.542 Sum_probs=195.9
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
|+|+|||++|. ++.+++|+||+|++||++.++|||||||||++|++.|+++|++|+|++||.|+++++.-.+|++||
T Consensus 2 I~~~nvsk~y~---~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IG 78 (309)
T COG1125 2 IEFENVSKRYG---NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIG 78 (309)
T ss_pred ceeeeeehhcC---CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhh
Confidence 78999999996 457999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCc-ccHHHHHhcCCCCCCCCCHHH----HHHHHHHHhhcc--chhhhhcCccccccCCCCCCChhHHHHHHH
Q psy5743 480 SVSQEPTLFS-GTIYENILYGVNDSSSVTKSD----IIHAAKEANAYG--FVIDFKNGFDTIVGERGIMLSGGQKQRIAI 552 (644)
Q Consensus 480 ~V~Q~~~Lf~-gTIreNI~~g~~~~~~~~~~~----i~~a~~~a~l~~--~i~~lp~Gl~T~ige~G~~LSGGQkQRiaL 552 (644)
||-|..-||. -||.|||++- |.-...+.++ +.+.++.++++. |..+.| ..|||||+||+.+
T Consensus 79 YviQqigLFPh~Tv~eNIa~V-P~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP-----------~eLSGGQQQRVGv 146 (309)
T COG1125 79 YVIQQIGLFPHLTVAENIATV-PKLLGWDKERIKKRADELLDLVGLDPSEYADRYP-----------HELSGGQQQRVGV 146 (309)
T ss_pred hhhhhcccCCCccHHHHHHhh-hhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCc-----------hhcCcchhhHHHH
Confidence 9999999996 7999999975 4323345554 455666777652 555555 5799999999999
Q ss_pred HHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchH-HhhcCEEEEEeCCeEEEecChhHHhcC
Q psy5743 553 ARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLST-IRKSNQICVLDKGKIVEIGSYAHLIKN 629 (644)
Q Consensus 553 ARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~-i~~aD~Iivl~~G~ive~Gt~~eLl~~ 629 (644)
||||..+|+|+++|||+||||+-+...+++-+.++.+ ++|+|+|||+.+. ++-||||.+|++|+|++.|++++++++
T Consensus 147 ~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~ 226 (309)
T COG1125 147 ARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILAN 226 (309)
T ss_pred HHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhC
Confidence 9999999999999999999999999999999877543 8999999999885 688999999999999999999999987
Q ss_pred CCcHHH
Q psy5743 630 PNSMFN 635 (644)
Q Consensus 630 ~~~~y~ 635 (644)
+...|-
T Consensus 227 Pan~FV 232 (309)
T COG1125 227 PANDFV 232 (309)
T ss_pred ccHHHH
Confidence 765554
No 58
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.7e-50 Score=401.42 Aligned_cols=226 Identities=50% Similarity=0.829 Sum_probs=212.1
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
.|+++|++++|++ .+++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.+
T Consensus 2 ~l~~~~l~~~~~~--~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 79 (229)
T cd03254 2 EIEFENVNFSYDE--KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMI 79 (229)
T ss_pred eEEEEEEEEecCC--CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhE
Confidence 5899999999963 34699999999999999999999999999999999999999999999999999988888899999
Q ss_pred EEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHcc
Q psy5743 479 GSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIK 558 (644)
Q Consensus 479 ~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~ 558 (644)
+|++|++.+|++|++||+.++.++ ..++++.++++..++.+++..+|.|+++.++.....||||||||++|||||++
T Consensus 80 ~~~~q~~~~~~~tv~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~ 156 (229)
T cd03254 80 GVVLQDTFLFSGTIMENIRLGRPN---ATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLR 156 (229)
T ss_pred EEecCCchhhhhHHHHHHhccCCC---CCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhc
Confidence 999999999999999999998654 45678888889999999999999999999999999999999999999999999
Q ss_pred CCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEecChhHHhcC
Q psy5743 559 KSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKN 629 (644)
Q Consensus 559 ~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eLl~~ 629 (644)
+|+++||||||++||+.+.+.+.+.|.++.+++|+|+|||+++.+..||+|++|++|++++.|+.+++.++
T Consensus 157 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~~ 227 (229)
T cd03254 157 DPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAK 227 (229)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHhh
Confidence 99999999999999999999999999988778999999999999999999999999999999999888754
No 59
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.9e-50 Score=403.20 Aligned_cols=233 Identities=50% Similarity=0.821 Sum_probs=215.4
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
|+++|++++|++. ..++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (234)
T cd03251 1 VEFKNVTFRYPGD-GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG 79 (234)
T ss_pred CEEEEEEEEeCCC-CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 5789999999742 246999999999999999999999999999999999999999999999999998888888999999
Q ss_pred EEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccC
Q psy5743 480 SVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKK 559 (644)
Q Consensus 480 ~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~ 559 (644)
|++|++.+|+.|++||+.++.++ .+.+++.+.++..++.++++.+|.|+++..+.....||||||||++||||++++
T Consensus 80 ~~~q~~~~~~~tv~enl~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~ 156 (234)
T cd03251 80 LVSQDVFLFNDTVAENIAYGRPG---ATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKD 156 (234)
T ss_pred EeCCCCeeccccHHHHhhccCCC---CCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999998653 456777788888899999999999999999999999999999999999999999
Q ss_pred CCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEecChhHHhcCCCcHHHHH
Q psy5743 560 SKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKL 637 (644)
Q Consensus 560 p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eLl~~~~~~y~~l 637 (644)
|+++||||||++||+.+...+.+.|.++.+++|+|++||+++.+..||+|++|++|++++.|+.+++.+. .+.|+.+
T Consensus 157 p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-~~~~~~~ 233 (234)
T cd03251 157 PPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQ-GGVYAKL 233 (234)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHc-Ccchhhh
Confidence 9999999999999999999999999998788999999999999999999999999999999999999876 5666543
No 60
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=8.5e-50 Score=402.45 Aligned_cols=237 Identities=57% Similarity=0.896 Sum_probs=216.4
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
|+++|++++|++..+.++|+|+||++++||.++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 47899999997533357999999999999999999999999999999999999999999999999998888888888999
Q ss_pred EEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccC
Q psy5743 480 SVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKK 559 (644)
Q Consensus 480 ~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~ 559 (644)
|++|++.+|+.|++||+.++.+. ...+++.+.++..++.+++..+|.|+++.......+||||||||++||||++.+
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~ 157 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPD---ATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRN 157 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCC---CCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcC
Confidence 99999999999999999998653 356677778888888899999999999999999999999999999999999999
Q ss_pred CCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEecChhHHhcCCCcHHHHHHH
Q psy5743 560 SKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLMK 639 (644)
Q Consensus 560 p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eLl~~~~~~y~~l~~ 639 (644)
|+++||||||++||+.+.+.+.+.|++..+++|+|++||+++.+..||+|++|++|++++.|+.+++.+. .+.+++++.
T Consensus 158 p~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-~~~~~~~~~ 236 (238)
T cd03249 158 PKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQ-KGVYAKLVK 236 (238)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhc-ChhHHHHhh
Confidence 9999999999999999999999999887778999999999999999999999999999999999998875 566666665
Q ss_pred h
Q psy5743 640 Y 640 (644)
Q Consensus 640 ~ 640 (644)
.
T Consensus 237 ~ 237 (238)
T cd03249 237 A 237 (238)
T ss_pred c
Confidence 4
No 61
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=7.8e-50 Score=398.20 Aligned_cols=220 Identities=43% Similarity=0.663 Sum_probs=207.5
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcc
Q psy5743 398 GEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQ 477 (644)
Q Consensus 398 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~ 477 (644)
+.|+++|++++|++. ++++|+|+||++++||.++|+||||||||||+++|+|+++|++|+|.++|.++..++...+|+.
T Consensus 1 ~~l~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (221)
T cd03244 1 GDIEFKNVSLRYRPN-LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSR 79 (221)
T ss_pred CcEEEEEEEEecCCC-CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhh
Confidence 358999999999742 3579999999999999999999999999999999999999999999999999999998899999
Q ss_pred eEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHc
Q psy5743 478 IGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALI 557 (644)
Q Consensus 478 i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll 557 (644)
++|++|++.+|++|++|||.+..+ .+.+++.++++..++.+++.++|.|++|..++.+.+||||||||++||||++
T Consensus 80 i~~~~q~~~l~~~tv~enl~~~~~----~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~ 155 (221)
T cd03244 80 ISIIPQDPVLFSGTIRSNLDPFGE----YSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALL 155 (221)
T ss_pred EEEECCCCccccchHHHHhCcCCC----CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHh
Confidence 999999999999999999987643 5678899999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEecC
Q psy5743 558 KKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGS 622 (644)
Q Consensus 558 ~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt 622 (644)
++|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+..||+|++|++|++++.|+
T Consensus 156 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 156 RKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred cCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 99999999999999999999999999998877899999999999999999999999999998876
No 62
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=3.1e-49 Score=414.45 Aligned_cols=228 Identities=31% Similarity=0.486 Sum_probs=193.9
Q ss_pred EEEEEEEEEcCCCC-CCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHH---Hh
Q psy5743 400 IDFNNIRFSYPSRP-DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMY---LR 475 (644)
Q Consensus 400 I~~~~vsf~Y~~~~-~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~---lr 475 (644)
|+++||+++|++.. ..++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.++..++..+ +|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999997422 347999999999999999999999999999999999999999999999999999988755 57
Q ss_pred cceEEEecCCCCCc-ccHHHHHhcCCCCCCCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHH
Q psy5743 476 SQIGSVSQEPTLFS-GTIYENILYGVNDSSSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRI 550 (644)
Q Consensus 476 ~~i~~V~Q~~~Lf~-gTIreNI~~g~~~~~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRi 550 (644)
+.|+||+|++.+|. .|++||+.++... ...+ ++++.++++..++.++..+ ....||||||||+
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~-~~~~~~~~~~~v~e~l~~vgL~~~~~~-----------~~~~LSgGqkQRV 149 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLEL-DNTPKDEIKRKVTELLALVGLGDKHDS-----------YPSNLSGGQKQRV 149 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCchhhhC-----------ChhhCCHHHHHHH
Confidence 89999999999995 7999999986421 0122 3456677777777655433 3468999999999
Q ss_pred HHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHhh-cCEEEEEeCCeEEEecChhHHh
Q psy5743 551 AIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLI 627 (644)
Q Consensus 551 aLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~~-aD~Iivl~~G~ive~Gt~~eLl 627 (644)
+|||||+.+|++|+||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.++. ||+|++|++|+|++.|++++++
T Consensus 150 ~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~ 229 (343)
T TIGR02314 150 AIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIF 229 (343)
T ss_pred HHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999998754 7899999999999854 9999999999999999999998
Q ss_pred cCCCc-HHHHHHH
Q psy5743 628 KNPNS-MFNKLMK 639 (644)
Q Consensus 628 ~~~~~-~y~~l~~ 639 (644)
..+.. ..++++.
T Consensus 230 ~~p~~~~~~~~~~ 242 (343)
T TIGR02314 230 SHPKTPLAQKFIR 242 (343)
T ss_pred cCCCcHHHHHHHh
Confidence 65433 3344443
No 63
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=3.4e-49 Score=389.96 Aligned_cols=216 Identities=36% Similarity=0.530 Sum_probs=194.4
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
.++++|++|+|+ ++++|+|+||+|++||+++|+||+|||||||+|+|+|+++|.+|+|++||+|+.+++.+++.+++
T Consensus 2 ~L~~~~ls~~y~---~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~i 78 (258)
T COG1120 2 MLEVENLSFGYG---GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKL 78 (258)
T ss_pred eeEEEEEEEEEC---CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhE
Confidence 378999999996 35899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCC-CCCcccHHHHHhcCCCCC-------CCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHH
Q psy5743 479 GSVSQEP-TLFSGTIYENILYGVNDS-------SSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRI 550 (644)
Q Consensus 479 ~~V~Q~~-~Lf~gTIreNI~~g~~~~-------~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRi 550 (644)
|||||++ .-|.-|++|=+.+|+-.. .+.|++.+.+|++..++.++..+ .-..||||||||+
T Consensus 79 a~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r-----------~~~~LSGGerQrv 147 (258)
T COG1120 79 AYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADR-----------PVDELSGGERQRV 147 (258)
T ss_pred EEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcC-----------cccccChhHHHHH
Confidence 9999995 567789999999997431 12344568889999998776433 2346999999999
Q ss_pred HHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchH-HhhcCEEEEEeCCeEEEecChhHHh
Q psy5743 551 AIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLST-IRKSNQICVLDKGKIVEIGSYAHLI 627 (644)
Q Consensus 551 aLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~-i~~aD~Iivl~~G~ive~Gt~~eLl 627 (644)
.|||||.++|+||+||||||+||..+.-.+++.++++.+ ++|+|+|.|++.. .+.||++++|++|+++..|+++|.+
T Consensus 148 ~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 148 LIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred HHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhc
Confidence 999999999999999999999999999999999999863 6999999999976 5889999999999999999999988
Q ss_pred c
Q psy5743 628 K 628 (644)
Q Consensus 628 ~ 628 (644)
.
T Consensus 228 T 228 (258)
T COG1120 228 T 228 (258)
T ss_pred C
Confidence 5
No 64
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=1.2e-48 Score=389.38 Aligned_cols=219 Identities=45% Similarity=0.716 Sum_probs=203.4
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
+|+++|++++|++. ..++++|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++..++...+|+.+
T Consensus 2 ~l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (220)
T cd03245 2 RIEFRNVSFSYPNQ-EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNI 80 (220)
T ss_pred eEEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 58999999999642 35699999999999999999999999999999999999999999999999999888888888899
Q ss_pred EEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHcc
Q psy5743 479 GSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIK 558 (644)
Q Consensus 479 ~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~ 558 (644)
+|++|++.+|..|++||+.++.+. .+++++.++++..++.+.+...|.|++|.+.+....||||||||++||||++.
T Consensus 81 ~~~~q~~~~~~~tv~e~l~~~~~~---~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~ 157 (220)
T cd03245 81 GYVPQDVTLFYGTLRDNITLGAPL---ADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLN 157 (220)
T ss_pred EEeCCCCccccchHHHHhhcCCCC---CCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhc
Confidence 999999999999999999987543 45677888899999988899999999999999999999999999999999999
Q ss_pred CCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEec
Q psy5743 559 KSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIG 621 (644)
Q Consensus 559 ~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~G 621 (644)
+|+++||||||++||.++...+.+.|.++.+++|+|++||+++.+..||+|++|++|++++.|
T Consensus 158 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 158 DPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 999999999999999999999999999987678999999999999999999999999998765
No 65
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-48 Score=408.48 Aligned_cols=222 Identities=31% Similarity=0.469 Sum_probs=187.8
Q ss_pred cEEEEEEEEEcCCCC--CCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCC-------
Q psy5743 399 EIDFNNIRFSYPSRP--DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKEL------- 469 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~--~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~------- 469 (644)
-|+++|++|+|++.. +.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|+++.+.
T Consensus 21 ~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~ 100 (320)
T PRK13631 21 ILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELI 100 (320)
T ss_pred eEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccccccc
Confidence 599999999997421 24699999999999999999999999999999999999999999999999998653
Q ss_pred ---------ChHHHhcceEEEecCC--CCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCcc-ccccC
Q psy5743 470 ---------DPMYLRSQIGSVSQEP--TLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFD-TIVGE 537 (644)
Q Consensus 470 ---------~~~~lr~~i~~V~Q~~--~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~-T~ige 537 (644)
+...+|+.++||+|+| ++|++|++|||.++... ...+.++..+.++ ++++.+ |++ ...++
T Consensus 101 ~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~-~~~~~~~~~~~~~-----~~l~~~--gL~~~~~~~ 172 (320)
T PRK13631 101 TNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVA-LGVKKSEAKKLAK-----FYLNKM--GLDDSYLER 172 (320)
T ss_pred ccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHh-cCCCHHHHHHHHH-----HHHHHc--CCChhHhcC
Confidence 3567899999999998 79999999999987321 1134444322111 223333 453 45677
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHH-hhcCEEEEEeCC
Q psy5743 538 RGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTI-RKSNQICVLDKG 615 (644)
Q Consensus 538 ~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i-~~aD~Iivl~~G 615 (644)
.+.+||||||||++|||||+++|+|||||||||+||+.+++.+.+.|.++. +++|+|+|||+++.+ +.||+|++|++|
T Consensus 173 ~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G 252 (320)
T PRK13631 173 SPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKG 252 (320)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 889999999999999999999999999999999999999999999998764 478999999999977 679999999999
Q ss_pred eEEEecChhHHhc
Q psy5743 616 KIVEIGSYAHLIK 628 (644)
Q Consensus 616 ~ive~Gt~~eLl~ 628 (644)
++++.|+++++.+
T Consensus 253 ~i~~~g~~~~~~~ 265 (320)
T PRK13631 253 KILKTGTPYEIFT 265 (320)
T ss_pred EEEEeCCHHHHhc
Confidence 9999999998764
No 66
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.8e-48 Score=385.25 Aligned_cols=217 Identities=36% Similarity=0.583 Sum_probs=196.6
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCC-CCChHHHhcc
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIK-ELDPMYLRSQ 477 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~-~~~~~~lr~~ 477 (644)
-|+++|++|+|+++ .++|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.+||.++. ..+...+|++
T Consensus 3 ~i~~~~l~~~y~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~ 80 (235)
T COG1122 3 MIEAENLSFRYPGR--KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK 80 (235)
T ss_pred eEEEEEEEEEcCCC--ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc
Confidence 48899999999864 68999999999999999999999999999999999999999999999999999 5889999999
Q ss_pred eEEEecCC--CCCcccHHHHHhcCCCCCCCCCHHH----HHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHH
Q psy5743 478 IGSVSQEP--TLFSGTIYENILYGVNDSSSVTKSD----IIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIA 551 (644)
Q Consensus 478 i~~V~Q~~--~Lf~gTIreNI~~g~~~~~~~~~~~----i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRia 551 (644)
+|+|.|+| ++|..||.|.++||-.+ ...+.++ +.++++.+++.++..+. -.+||||||||+|
T Consensus 81 vG~VfQnpd~q~~~~tV~~evafg~~n-~g~~~~e~~~rv~~~l~~vgl~~~~~r~-----------p~~LSGGqkqRva 148 (235)
T COG1122 81 VGLVFQNPDDQLFGPTVEDEVAFGLEN-LGLPREEIEERVAEALELVGLEELLDRP-----------PFNLSGGQKQRVA 148 (235)
T ss_pred eEEEEECcccccccCcHHHHHhhchhh-cCCCHHHHHHHHHHHHHHcCchhhccCC-----------ccccCCcceeeHH
Confidence 99999999 89999999999999654 3455555 55667777776664443 3689999999999
Q ss_pred HHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCC--ceEEEEccCchHHhh-cCEEEEEeCCeEEEecChhHHhc
Q psy5743 552 IARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEG--KTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLIK 628 (644)
Q Consensus 552 LARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~--~TvI~IaHrl~~i~~-aD~Iivl~~G~ive~Gt~~eLl~ 628 (644)
||.+|..+|++||||||||+||+.+.+.+.+.++++.++ +|+|+|||+++.+.. ||++++|++|+++.+|+++|+.+
T Consensus 149 IA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~ 228 (235)
T COG1122 149 IAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFN 228 (235)
T ss_pred hhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhh
Confidence 999999999999999999999999999999999998654 799999999999977 99999999999999999999986
Q ss_pred C
Q psy5743 629 N 629 (644)
Q Consensus 629 ~ 629 (644)
+
T Consensus 229 ~ 229 (235)
T COG1122 229 D 229 (235)
T ss_pred h
Confidence 4
No 67
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=3.1e-48 Score=369.68 Aligned_cols=228 Identities=32% Similarity=0.541 Sum_probs=198.2
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHH---H
Q psy5743 398 GEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMY---L 474 (644)
Q Consensus 398 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~---l 474 (644)
..|++++|+++|. ++.|++||||+|++||.++|+|+||||||||++++.|+..|++|+|.++|.|+.+++.++ +
T Consensus 7 ~~I~vr~v~~~fG---~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~i 83 (263)
T COG1127 7 PLIEVRGVTKSFG---DRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEI 83 (263)
T ss_pred ceEEEeeeeeecC---CEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHH
Confidence 3599999999995 467999999999999999999999999999999999999999999999999999999754 5
Q ss_pred hcceEEEecCCCCCcc-cHHHHHhcCCCCCCCCCHHHHHHH----HHHHhhccc-hhhhhcCccccccCCCCCCChhHHH
Q psy5743 475 RSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHA----AKEANAYGF-VIDFKNGFDTIVGERGIMLSGGQKQ 548 (644)
Q Consensus 475 r~~i~~V~Q~~~Lf~g-TIreNI~~g~~~~~~~~~~~i~~a----~~~a~l~~~-i~~lp~Gl~T~ige~G~~LSGGQkQ 548 (644)
|+++|+++|..-||+. ||+||+.|--.+....+++++.+. ++.+|+... .+.+| +.||||.+.
T Consensus 84 r~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~P-----------sELSGGM~K 152 (263)
T COG1127 84 RKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYP-----------SELSGGMRK 152 (263)
T ss_pred HhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCc-----------hhhcchHHH
Confidence 8899999999999985 999999995433344667766653 456666555 23344 689999999
Q ss_pred HHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhH
Q psy5743 549 RIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAH 625 (644)
Q Consensus 549 RiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~e 625 (644)
|+|||||+.-||+|+++|||||+||+.+...+.+.|+++.+ +.|+|+|||+++++. -||+|+++.||+|+..||++|
T Consensus 153 RvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~e 232 (263)
T COG1127 153 RVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEE 232 (263)
T ss_pred HHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHH
Confidence 99999999999999999999999999999999998877653 789999999999875 579999999999999999999
Q ss_pred HhcCCCcHHHHHHH
Q psy5743 626 LIKNPNSMFNKLMK 639 (644)
Q Consensus 626 Ll~~~~~~y~~l~~ 639 (644)
+.+.++...++++.
T Consensus 233 l~~sd~P~v~qf~~ 246 (263)
T COG1127 233 LLASDDPWVRQFFN 246 (263)
T ss_pred HHhCCCHHHHHHhc
Confidence 99986666666654
No 68
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.3e-48 Score=400.34 Aligned_cols=220 Identities=36% Similarity=0.602 Sum_probs=194.3
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
.|+++||+.+|++. . +++|+||+|++||+++|+||||||||||+++|+|+.+|++|+|+|||.++++++|+. +.|
T Consensus 3 ~i~l~~v~K~yg~~--~-~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~i 77 (338)
T COG3839 3 ELELKNVRKSFGSF--E-VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGI 77 (338)
T ss_pred EEEEeeeEEEcCCc--e-eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCE
Confidence 58999999999742 2 899999999999999999999999999999999999999999999999999999976 789
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCCCCC---CCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHH
Q psy5743 479 GSVSQEPTLFSG-TIYENILYGVNDSS---SVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIAR 554 (644)
Q Consensus 479 ~~V~Q~~~Lf~g-TIreNI~~g~~~~~---~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLAR 554 (644)
|+|+|+.-||.- |++|||+|+-.... ..-++++.++++..++.+.+++.| ..||||||||+||||
T Consensus 78 amVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P-----------~~LSGGQrQRVAlaR 146 (338)
T COG3839 78 AMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKP-----------LQLSGGQRQRVALAR 146 (338)
T ss_pred EEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCc-----------ccCChhhHHHHHHHH
Confidence 999999999985 99999999965321 123667788888888888877766 579999999999999
Q ss_pred HHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchH-HhhcCEEEEEeCCeEEEecChhHHhcCCC
Q psy5743 555 ALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLST-IRKSNQICVLDKGKIVEIGSYAHLIKNPN 631 (644)
Q Consensus 555 All~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~-i~~aD~Iivl~~G~ive~Gt~~eLl~~~~ 631 (644)
||.++|++++||||+|+||++........|+++.+ +.|+|+|||+... ...||||.||++|+|.+.|++.|+..++.
T Consensus 147 AlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P~ 226 (338)
T COG3839 147 ALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPA 226 (338)
T ss_pred HHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCcc
Confidence 99999999999999999999988888777776543 5799999999665 57799999999999999999999998765
Q ss_pred cHH
Q psy5743 632 SMF 634 (644)
Q Consensus 632 ~~y 634 (644)
..|
T Consensus 227 n~f 229 (338)
T COG3839 227 NLF 229 (338)
T ss_pred chh
Confidence 544
No 69
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.5e-48 Score=389.86 Aligned_cols=221 Identities=32% Similarity=0.517 Sum_probs=187.0
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCCh---HHHhc
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDP---MYLRS 476 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~---~~lr~ 476 (644)
|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+. ..+|+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (235)
T cd03261 1 IELRGLTKSFGG---RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRR 77 (235)
T ss_pred CeEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhc
Confidence 578999999963 469999999999999999999999999999999999999999999999999988765 57888
Q ss_pred ceEEEecCCCCCcc-cHHHHHhcCCCCCCCCCH----HHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHH
Q psy5743 477 QIGSVSQEPTLFSG-TIYENILYGVNDSSSVTK----SDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIA 551 (644)
Q Consensus 477 ~i~~V~Q~~~Lf~g-TIreNI~~g~~~~~~~~~----~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRia 551 (644)
.++||+|++.+|.+ |++||+.++.......+. +++.++++..++.++. ......||||||||++
T Consensus 78 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrv~ 146 (235)
T cd03261 78 RMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAE-----------DLYPAELSGGMKKRVA 146 (235)
T ss_pred ceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhh-----------cCChhhCCHHHHHHHH
Confidence 99999999999986 999999986321001232 3345555555554332 2333579999999999
Q ss_pred HHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHHhc
Q psy5743 552 IARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHLIK 628 (644)
Q Consensus 552 LARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eLl~ 628 (644)
||||++++|+++||||||++||+.+...+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|++++.|+++++.+
T Consensus 147 ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 226 (235)
T cd03261 147 LARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226 (235)
T ss_pred HHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcC
Confidence 99999999999999999999999999999999988753 789999999999876 499999999999999999999886
Q ss_pred CCCcHHH
Q psy5743 629 NPNSMFN 635 (644)
Q Consensus 629 ~~~~~y~ 635 (644)
. ...|.
T Consensus 227 ~-~~~~~ 232 (235)
T cd03261 227 S-DDPLV 232 (235)
T ss_pred C-CChhh
Confidence 4 34443
No 70
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=6e-48 Score=385.92 Aligned_cols=219 Identities=49% Similarity=0.821 Sum_probs=199.6
Q ss_pred CCccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHh
Q psy5743 396 LKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLR 475 (644)
Q Consensus 396 ~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr 475 (644)
..+.|+++|++++|++....++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...++
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 87 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH 87 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHH
Confidence 34569999999999753234699999999999999999999999999999999999999999999999999888888888
Q ss_pred cceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHH
Q psy5743 476 SQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARA 555 (644)
Q Consensus 476 ~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARA 555 (644)
+.++|++|++.+|++|++||+.++... .+.+++.+..+..++.++++.+|.|+++.+.+...+||||||||++||||
T Consensus 88 ~~i~~~~q~~~l~~~tv~~nl~~~~~~---~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~lara 164 (226)
T cd03248 88 SKVSLVGQEPVLFARSLQDNIAYGLQS---CSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARA 164 (226)
T ss_pred hhEEEEecccHHHhhhHHHHhccccCC---CCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHH
Confidence 999999999999999999999987543 34555666666677888999999999999999999999999999999999
Q ss_pred HccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeE
Q psy5743 556 LIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKI 617 (644)
Q Consensus 556 ll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~i 617 (644)
++++|+++||||||++||+++...+.+.|.++.+++|+|+|||+++.+..||+|++|++|++
T Consensus 165 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 165 LIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 99999999999999999999999999999998777899999999999999999999999975
No 71
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=8.6e-48 Score=372.77 Aligned_cols=209 Identities=34% Similarity=0.482 Sum_probs=174.8
Q ss_pred EEEEEEEEEcCCCC-CCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChH---HH-
Q psy5743 400 IDFNNIRFSYPSRP-DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPM---YL- 474 (644)
Q Consensus 400 I~~~~vsf~Y~~~~-~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~---~l- 474 (644)
++++||+..|.... ...+|+++||+|++||+|||+||||||||||+++|.|+..|++|.|.++|.|+..++.+ .+
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 57899999997432 24689999999999999999999999999999999999999999999999999999853 34
Q ss_pred hcceEEEecCCCCCc-ccHHHHHhc----CCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHH
Q psy5743 475 RSQIGSVSQEPTLFS-GTIYENILY----GVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQR 549 (644)
Q Consensus 475 r~~i~~V~Q~~~Lf~-gTIreNI~~----g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQR 549 (644)
|++||+|+|+..|+. -|++|||.+ .... .....+++.+.++..++.+... ......||||||||
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~-~~~~~~~~~~l~~~lgl~~~~~----------~~~p~eLSGGqqQR 150 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKS-AGRRKRAAEELLEVLGLEDRLL----------KKKPSELSGGQQQR 150 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCC-hhHHHHHHHHHHHhcCChhhhc----------cCCchhcCHHHHHH
Confidence 446999999999886 599999994 3211 0012344555555556554333 12346899999999
Q ss_pred HHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHhhcCEEEEEeCCeEEE
Q psy5743 550 IAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIRKSNQICVLDKGKIVE 619 (644)
Q Consensus 550 iaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~~aD~Iivl~~G~ive 619 (644)
+||||||..+|+|++.||||+|||+++.+.|++.+.++.+ ++|+|+|||++.....|||++.|+||++.+
T Consensus 151 VAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~~ 222 (226)
T COG1136 151 VAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEE 222 (226)
T ss_pred HHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeeee
Confidence 9999999999999999999999999999999999998743 689999999999999999999999999543
No 72
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=5.9e-48 Score=386.22 Aligned_cols=215 Identities=36% Similarity=0.595 Sum_probs=185.8
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccC-----CCCCcEEEECCccCCCCC--hH
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLY-----DPQNGKILIDGVDIKELD--PM 472 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~-----~p~~G~I~idg~~i~~~~--~~ 472 (644)
|+++||+++|++ +++|+|+||++++||+++|+||||||||||+++|+|++ +|++|+|.++|.++..++ ..
T Consensus 1 i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 77 (227)
T cd03260 1 IELRDLNVYYGD---KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVL 77 (227)
T ss_pred CEEEEEEEEcCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHH
Confidence 578999999964 46999999999999999999999999999999999999 999999999999998877 66
Q ss_pred HHhcceEEEecCCCCCcccHHHHHhcCCCCCCCC----CHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHH
Q psy5743 473 YLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSV----TKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQ 548 (644)
Q Consensus 473 ~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~----~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQ 548 (644)
.+|++++|++|++.+|+.|++||+.++....... .++++.++++..++.+...+.++ +.+|||||||
T Consensus 78 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~~LSgG~~q 148 (227)
T cd03260 78 ELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH---------ALGLSGGQQQ 148 (227)
T ss_pred HHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC---------cccCCHHHHH
Confidence 7888999999999999999999998864211001 23456667777776554333221 5789999999
Q ss_pred HHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHH
Q psy5743 549 RIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHL 626 (644)
Q Consensus 549 RiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eL 626 (644)
|++||||++++|++|||||||++||+++.+.+.+.|++..+++|+|+|||+++.+. .||+|++|++|++++.|+++++
T Consensus 149 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (227)
T cd03260 149 RLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227 (227)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCcccC
Confidence 99999999999999999999999999999999999999866689999999999875 5999999999999999998764
No 73
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-47 Score=387.29 Aligned_cols=221 Identities=30% Similarity=0.500 Sum_probs=194.2
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCC---CCCcEEEECCccCCCCChHHHh
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD---PQNGKILIDGVDIKELDPMYLR 475 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~---p~~G~I~idg~~i~~~~~~~lr 475 (644)
.|+++|+++.|++ +++|+|+||++++||.++|+|+||||||||+++|+|+++ |++|+|.+||+++...+...+|
T Consensus 2 ~~~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~ 78 (246)
T PRK14269 2 IAKTTNLNLFYGK---KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALR 78 (246)
T ss_pred ceeeeeeEEEECC---EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHh
Confidence 3789999999963 469999999999999999999999999999999999985 6999999999999988888889
Q ss_pred cceEEEecCCCCCcccHHHHHhcCCCCC-----CCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHH
Q psy5743 476 SQIGSVSQEPTLFSGTIYENILYGVNDS-----SSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRI 550 (644)
Q Consensus 476 ~~i~~V~Q~~~Lf~gTIreNI~~g~~~~-----~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRi 550 (644)
+.++|++|++.+|+.|++||+.++.... ....++++.++++..++.+++.. ...+.+.+||||||||+
T Consensus 79 ~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~qrv 151 (246)
T PRK14269 79 KNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKD-------KLKQNALALSGGQQQRL 151 (246)
T ss_pred hhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhH-------HhcCCcccCCHHHHHHH
Confidence 9999999999999999999998763110 01223456677788777665543 24556789999999999
Q ss_pred HHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHHhcC
Q psy5743 551 AIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHLIKN 629 (644)
Q Consensus 551 aLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eLl~~ 629 (644)
+||||++++|++++|||||++||.++...+.+.|.++.+++|+|+|||+++.+. .||+|++|++|++++.|+++++...
T Consensus 152 ~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 231 (246)
T PRK14269 152 CIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFEN 231 (246)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999999999999999999998877899999999999874 6999999999999999999999864
No 74
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-47 Score=393.26 Aligned_cols=219 Identities=32% Similarity=0.510 Sum_probs=191.5
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
-|+++||+++|++....++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++...+...+|+.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 38999999999743234699999999999999999999999999999999999999999999999999988888899999
Q ss_pred EEEecCC--CCCcccHHHHHhcCCCCCCCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHH
Q psy5743 479 GSVSQEP--TLFSGTIYENILYGVNDSSSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAI 552 (644)
Q Consensus 479 ~~V~Q~~--~Lf~gTIreNI~~g~~~~~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaL 552 (644)
+||+|+| .++..|++|||.++.... ..+ ++++.++++..++.++.... ..+||||||||++|
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~~~~-----------~~~LSgGq~qrv~l 151 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENK-GIPHEEMKERVNEALELVGMQDFKERE-----------PARLSGGQKQRVAI 151 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhC-CCCHHHHHHHHHHHHHHCCCHhHhhCC-----------cccCCHHHHHHHHH
Confidence 9999998 467789999999874321 123 34566677777765544333 36899999999999
Q ss_pred HHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHhhcCEEEEEeCCeEEEecChhHHhcC
Q psy5743 553 ARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKN 629 (644)
Q Consensus 553 ARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eLl~~ 629 (644)
||||+++|++|||||||++||+.+.+.+.+.|.++.+ ++|+|+|||+++.+..||+|++|++|++++.|+.+++.+.
T Consensus 152 Aral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 152 AGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR 230 (279)
T ss_pred HHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 9999999999999999999999999999999998753 7899999999999989999999999999999999988754
No 75
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-47 Score=371.70 Aligned_cols=198 Identities=32% Similarity=0.504 Sum_probs=177.3
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
.+++++|+.+|++ ..+|+||||+|++||+|+|+||||||||||++++.|+.+|++|+|.++|.++..-. ..+
T Consensus 3 ~l~i~~v~~~f~~---~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~-----~~~ 74 (248)
T COG1116 3 LLEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPG-----PDI 74 (248)
T ss_pred eEEEEeeEEEeCc---eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCC-----CCE
Confidence 4889999999974 57999999999999999999999999999999999999999999999999885544 389
Q ss_pred EEEecCCCCCc-ccHHHHHhcCCCCCC---CCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHH
Q psy5743 479 GSVSQEPTLFS-GTIYENILYGVNDSS---SVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIAR 554 (644)
Q Consensus 479 ~~V~Q~~~Lf~-gTIreNI~~g~~~~~---~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLAR 554 (644)
+||+|++.||. -|++||+.++-+... ...++++.++++.+|+.+|-.+.| ..||||||||+||||
T Consensus 75 ~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P-----------~qLSGGMrQRVaiAR 143 (248)
T COG1116 75 GYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYP-----------HQLSGGMRQRVAIAR 143 (248)
T ss_pred EEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCc-----------cccChHHHHHHHHHH
Confidence 99999999998 899999999976311 112456888899999999887777 579999999999999
Q ss_pred HHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchH-HhhcCEEEEEeCC
Q psy5743 555 ALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLST-IRKSNQICVLDKG 615 (644)
Q Consensus 555 All~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~-i~~aD~Iivl~~G 615 (644)
||..+|+||+||||+||||+.|....++.+.++.+ ++|+++|||+.+. +.-+|||+||.++
T Consensus 144 AL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 144 ALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred HHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCC
Confidence 99999999999999999999999999999988764 5999999999886 5789999999994
No 76
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=3.7e-47 Score=374.91 Aligned_cols=204 Identities=39% Similarity=0.622 Sum_probs=184.4
Q ss_pred CccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhc
Q psy5743 397 KGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRS 476 (644)
Q Consensus 397 ~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~ 476 (644)
.+.|+++|++++|++. ..++++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+|+
T Consensus 4 ~~~l~~~~l~~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 82 (207)
T cd03369 4 HGEIEVENLSVRYAPD-LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRS 82 (207)
T ss_pred CCeEEEEEEEEEeCCC-CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHh
Confidence 4569999999999742 347999999999999999999999999999999999999999999999999999888888999
Q ss_pred ceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHH
Q psy5743 477 QIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARAL 556 (644)
Q Consensus 477 ~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAl 556 (644)
.++||+|++.+|++|++||+.+..+ .+++++.++++ +.+....|||||+||++||||+
T Consensus 83 ~i~~v~q~~~~~~~tv~~~l~~~~~----~~~~~~~~~l~------------------~~~~~~~LS~G~~qrv~laral 140 (207)
T cd03369 83 SLTIIPQDPTLFSGTIRSNLDPFDE----YSDEEIYGALR------------------VSEGGLNLSQGQRQLLCLARAL 140 (207)
T ss_pred hEEEEecCCcccCccHHHHhcccCC----CCHHHHHHHhh------------------ccCCCCcCCHHHHHHHHHHHHH
Confidence 9999999999999999999987632 34555544443 3456789999999999999999
Q ss_pred ccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEecCh
Q psy5743 557 IKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSY 623 (644)
Q Consensus 557 l~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~ 623 (644)
+++|+++||||||++||+++...+.+.|++..+++|+|+|||+++.+..||++++|++|++++.|++
T Consensus 141 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 141 LKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred hhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCCC
Confidence 9999999999999999999999999999998778999999999999988999999999999998863
No 77
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.8e-47 Score=374.27 Aligned_cols=220 Identities=31% Similarity=0.504 Sum_probs=191.7
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
.|+++|++|+|.+ . ++|+||||+|++|++++|+||+|||||||+|+++|+++|++|+|.+.|.+.+.... +.+|
T Consensus 4 ~i~v~nl~v~y~~--~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~I 77 (254)
T COG1121 4 MIEVENLTVSYGN--R-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRI 77 (254)
T ss_pred EEEEeeeEEEECC--E-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeE
Confidence 4999999999964 3 59999999999999999999999999999999999999999999999998877654 5689
Q ss_pred EEEecC---CCCCcccHHHHHhcCCCCCC-------CCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHH
Q psy5743 479 GSVSQE---PTLFSGTIYENILYGVNDSS-------SVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQ 548 (644)
Q Consensus 479 ~~V~Q~---~~Lf~gTIreNI~~g~~~~~-------~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQ 548 (644)
|||||. ++=|.-||+|=+.+|+.... ..+.+++.+|++.+++.++. +-+||| |||||+|
T Consensus 78 gYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~-------~r~i~~----LSGGQ~Q 146 (254)
T COG1121 78 GYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLR-------DRQIGE----LSGGQKQ 146 (254)
T ss_pred EEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhh-------CCcccc----cCcHHHH
Confidence 999994 57899999999999864321 13468999999999988763 445654 9999999
Q ss_pred HHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC-CceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHH
Q psy5743 549 RIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE-GKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHL 626 (644)
Q Consensus 549 RiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~-~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eL 626 (644)
|+.|||||..+|++|+|||||+++|+.++..|.+.|.++.+ ++|+++|||+++.+. .+|+|+.|. ++++..|+.++.
T Consensus 147 RV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~~~G~~~~~ 225 (254)
T COG1121 147 RVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGPPEEV 225 (254)
T ss_pred HHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEc-CeeEeccChhhc
Confidence 99999999999999999999999999999999999999865 899999999999985 599999995 678899999998
Q ss_pred hcCCCcHHHHHH
Q psy5743 627 IKNPNSMFNKLM 638 (644)
Q Consensus 627 l~~~~~~y~~l~ 638 (644)
+.. ..+.+.+
T Consensus 226 ~~~--~~l~~~~ 235 (254)
T COG1121 226 LTE--ENLEKAF 235 (254)
T ss_pred cCH--HHHHHHh
Confidence 853 3444443
No 78
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=1.8e-46 Score=384.65 Aligned_cols=241 Identities=31% Similarity=0.470 Sum_probs=206.7
Q ss_pred HHHHHHHhcCCCccCCCCCccCCCCCccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhcc
Q psy5743 372 HRLWEIMEREPLISTSGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 372 ~Rl~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
+.+.+++..++++... .+ .....+.|+++|+++.. +++|+|+||+|++||+++|+|+||||||||+++|+|+
T Consensus 15 ~~~~~~~~~~~~~~~~-~~--~~~~~~~l~i~nls~~~-----~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl 86 (282)
T cd03291 15 EGFGELLEKAKQENND-RK--HSSDDNNLFFSNLCLVG-----APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGE 86 (282)
T ss_pred HHHHHHHhcccccccc-cc--cCCCCCeEEEEEEEEec-----ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567777765543221 11 22344569999999952 3599999999999999999999999999999999999
Q ss_pred CCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCc
Q psy5743 452 YDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGF 531 (644)
Q Consensus 452 ~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl 531 (644)
++|++|+|.++| .++|++|++++|++|++||+.++.. ..+.++.++++.+++.+++..+|.++
T Consensus 87 ~~p~~G~I~i~g-------------~i~yv~q~~~l~~~tv~enl~~~~~----~~~~~~~~~l~~~~l~~~l~~~~~~~ 149 (282)
T cd03291 87 LEPSEGKIKHSG-------------RISFSSQFSWIMPGTIKENIIFGVS----YDEYRYKSVVKACQLEEDITKFPEKD 149 (282)
T ss_pred CCCCCcEEEECC-------------EEEEEeCcccccccCHHHHhhcccc----cCHHHHHHHHHHhCCHHHHHhccccc
Confidence 999999999999 5999999999999999999998743 23456677788888888899999999
Q ss_pred cccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHH-HHHcCCceEEEEccCchHHhhcCEEE
Q psy5743 532 DTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAI-EKLIEGKTVLTIAHRLSTIRKSNQIC 610 (644)
Q Consensus 532 ~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l-~~~~~~~TvI~IaHrl~~i~~aD~Ii 610 (644)
+|.+++.+..||||||||++||||++++|++|||||||++||+++...+.+.+ .++.+++|+|+|||+++.+..||+|+
T Consensus 150 ~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~ 229 (282)
T cd03291 150 NTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKIL 229 (282)
T ss_pred cceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEE
Confidence 99999999999999999999999999999999999999999999999888754 55556899999999999999999999
Q ss_pred EEeCCeEEEecChhHHhcCCCcHHHHHH
Q psy5743 611 VLDKGKIVEIGSYAHLIKNPNSMFNKLM 638 (644)
Q Consensus 611 vl~~G~ive~Gt~~eLl~~~~~~y~~l~ 638 (644)
+|++|++++.|+++++.+. ...|.+.+
T Consensus 230 ~l~~G~i~~~g~~~~~~~~-~~~~~~~~ 256 (282)
T cd03291 230 ILHEGSSYFYGTFSELQSL-RPDFSSKL 256 (282)
T ss_pred EEECCEEEEECCHHHHHhc-chHHHHHH
Confidence 9999999999999999864 34555444
No 79
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.5e-47 Score=400.78 Aligned_cols=223 Identities=33% Similarity=0.530 Sum_probs=188.2
Q ss_pred EEEEEEEEEcCCC-CCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHH---Hh
Q psy5743 400 IDFNNIRFSYPSR-PDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMY---LR 475 (644)
Q Consensus 400 I~~~~vsf~Y~~~-~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~---lr 475 (644)
|+++|++++|++. .+.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++..+ +|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 7899999999731 1357999999999999999999999999999999999999999999999999999887654 47
Q ss_pred cceEEEecCCCCCc-ccHHHHHhcCCCCCCCCCH----HHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHH
Q psy5743 476 SQIGSVSQEPTLFS-GTIYENILYGVNDSSSVTK----SDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRI 550 (644)
Q Consensus 476 ~~i~~V~Q~~~Lf~-gTIreNI~~g~~~~~~~~~----~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRi 550 (644)
++|+||+|++.+|. .|++||+.++.... ..+. +++.++++..++.++ .......||||||||+
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~-----------~~~~~~~LSgGq~qRv 149 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELA-GTPKAEIKARVTELLELVGLSDK-----------ADRYPAQLSGGQKQRV 149 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCchh-----------hhCChhhCCHHHHHHH
Confidence 89999999999986 69999999863210 1222 334455555554333 3334568999999999
Q ss_pred HHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHhh-cCEEEEEeCCeEEEecChhHHh
Q psy5743 551 AIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLI 627 (644)
Q Consensus 551 aLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~~-aD~Iivl~~G~ive~Gt~~eLl 627 (644)
+|||||+++|++||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 150 ~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~ 229 (343)
T PRK11153 150 AIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVF 229 (343)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999998753 7899999999999865 9999999999999999999998
Q ss_pred cCCCcHH
Q psy5743 628 KNPNSMF 634 (644)
Q Consensus 628 ~~~~~~y 634 (644)
..+...+
T Consensus 230 ~~~~~~~ 236 (343)
T PRK11153 230 SHPKHPL 236 (343)
T ss_pred hCCCcHH
Confidence 6533333
No 80
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4e-47 Score=401.76 Aligned_cols=220 Identities=27% Similarity=0.458 Sum_probs=191.4
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
.|+++|++++|++ +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.++++. ++.|
T Consensus 3 ~l~i~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 78 (356)
T PRK11650 3 GLKLQAVRKSYDG--KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDI 78 (356)
T ss_pred EEEEEeEEEEeCC--CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 3899999999952 35699999999999999999999999999999999999999999999999999887764 4789
Q ss_pred EEEecCCCCCc-ccHHHHHhcCCCCCCCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHH
Q psy5743 479 GSVSQEPTLFS-GTIYENILYGVNDSSSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIA 553 (644)
Q Consensus 479 ~~V~Q~~~Lf~-gTIreNI~~g~~~~~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLA 553 (644)
|||+|++.+|. .|++|||.|+.... ..+ ++++.++++..++.++..+.| .+||||||||++||
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRvalA 146 (356)
T PRK11650 79 AMVFQNYALYPHMSVRENMAYGLKIR-GMPKAEIEERVAEAARILELEPLLDRKP-----------RELSGGQRQRVAMG 146 (356)
T ss_pred EEEeCCccccCCCCHHHHHHhHHhhc-CCCHHHHHHHHHHHHHHcCChhHhhCCh-----------hhCCHHHHHHHHHH
Confidence 99999999996 69999999975321 122 245667777777766655554 58999999999999
Q ss_pred HHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhHHhcCC
Q psy5743 554 RALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHLIKNP 630 (644)
Q Consensus 554 RAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~eLl~~~ 630 (644)
|||+++|++|+||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+ ..||+|++|++|++++.|+++|+.+++
T Consensus 147 RAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p 226 (356)
T PRK11650 147 RAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKP 226 (356)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCC
Confidence 999999999999999999999999999999988754 68999999999866 679999999999999999999998765
Q ss_pred CcHH
Q psy5743 631 NSMF 634 (644)
Q Consensus 631 ~~~y 634 (644)
...|
T Consensus 227 ~~~~ 230 (356)
T PRK11650 227 ASTF 230 (356)
T ss_pred ccHH
Confidence 4444
No 81
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.8e-47 Score=380.53 Aligned_cols=225 Identities=38% Similarity=0.572 Sum_probs=192.5
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
.|+++|++|+|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.+
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 79 (241)
T PRK14250 3 EIEFKEVSYSSFG---KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKI 79 (241)
T ss_pred eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcE
Confidence 4899999999963 4699999999999999999999999999999999999999999999999999988888889999
Q ss_pred EEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHcc
Q psy5743 479 GSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIK 558 (644)
Q Consensus 479 ~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~ 558 (644)
+|++|++.+|+.|++||+.++... ....++++.+.++..++.+ .........||||||||++||||+++
T Consensus 80 ~~~~q~~~~~~~tv~e~l~~~~~~-~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS~G~~qrl~la~al~~ 148 (241)
T PRK14250 80 GMVFQQPHLFEGTVKDNIEYGPML-KGEKNVDVEYYLSIVGLNK----------EYATRDVKNLSGGEAQRVSIARTLAN 148 (241)
T ss_pred EEEecCchhchhhHHHHHhcchhh-cCcHHHHHHHHHHHcCCCH----------HHhhCCcccCCHHHHHHHHHHHHHhc
Confidence 999999999999999999986421 1122345555555555421 11234567899999999999999999
Q ss_pred CCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHHhcCCCcHHH
Q psy5743 559 KSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHLIKNPNSMFN 635 (644)
Q Consensus 559 ~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eLl~~~~~~y~ 635 (644)
+|+++||||||++||.++.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|++++.|+.+++...+...|.
T Consensus 149 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~ 228 (241)
T PRK14250 149 NPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQNEVT 228 (241)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcCCCcHHH
Confidence 9999999999999999999999999988753 789999999999976 5999999999999999999999865333454
Q ss_pred HH
Q psy5743 636 KL 637 (644)
Q Consensus 636 ~l 637 (644)
+.
T Consensus 229 ~~ 230 (241)
T PRK14250 229 KL 230 (241)
T ss_pred HH
Confidence 43
No 82
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=3.5e-47 Score=345.91 Aligned_cols=212 Identities=33% Similarity=0.522 Sum_probs=190.3
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
|.+++|.|+|.. .+ -..+++|++||+|||+||||||||||++++.||..|.+|+|.|||+|.....|. ++-++
T Consensus 2 l~L~~V~~~y~~--~~---~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~--~RPVS 74 (231)
T COG3840 2 LALDDVRFSYGH--LP---MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPA--ERPVS 74 (231)
T ss_pred ccccceEEeeCc--ce---EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcc--cCChh
Confidence 568899999963 22 368899999999999999999999999999999999999999999999988875 46799
Q ss_pred EEecCCCCCc-ccHHHHHhcCCCCCCC---CCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHH
Q psy5743 480 SVSQEPTLFS-GTIYENILYGVNDSSS---VTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARA 555 (644)
Q Consensus 480 ~V~Q~~~Lf~-gTIreNI~~g~~~~~~---~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARA 555 (644)
+++|+.-||. -||++||.+|....-+ .+.+++..++..+|+.++..+|| ..||||||||+||||+
T Consensus 75 mlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP-----------~~LSGGqRQRvALARc 143 (231)
T COG3840 75 MLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLP-----------GELSGGQRQRVALARC 143 (231)
T ss_pred hhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCc-----------cccCchHHHHHHHHHH
Confidence 9999999997 6999999999864322 35678999999999999999998 3699999999999999
Q ss_pred HccCCCEEEeecccCCCCHHHHHHHHHHHHHHc--CCceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhHHhcC
Q psy5743 556 LIKKSKILLLDEATSALDAENEYLVQSAIEKLI--EGKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHLIKN 629 (644)
Q Consensus 556 ll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~--~~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~eLl~~ 629 (644)
|.|+.|||+||||+||||+.-.......+.++. ++.|+++|||.++.+ +.+|+++++++|+|.++|.-+++++.
T Consensus 144 lvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~ 220 (231)
T COG3840 144 LVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSG 220 (231)
T ss_pred HhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhcc
Confidence 999999999999999999998888888887765 467999999999987 56999999999999999999999875
No 83
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=6.1e-47 Score=383.64 Aligned_cols=224 Identities=34% Similarity=0.511 Sum_probs=191.1
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCC-----CcEEEECCccCCCC--ChH
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQ-----NGKILIDGVDIKEL--DPM 472 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~-----~G~I~idg~~i~~~--~~~ 472 (644)
|+++||+++|++ .++++|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.+||.++... +..
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~ 78 (247)
T TIGR00972 2 IEIENLNLFYGE---KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVV 78 (247)
T ss_pred EEEEEEEEEECC---eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchH
Confidence 789999999964 36899999999999999999999999999999999999998 99999999998763 456
Q ss_pred HHhcceEEEecCCCCCcccHHHHHhcCCCCCC----CCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHH
Q psy5743 473 YLRSQIGSVSQEPTLFSGTIYENILYGVNDSS----SVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQ 548 (644)
Q Consensus 473 ~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~----~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQ 548 (644)
.+|+.++||+|++.+|..|++||+.++..... ...++++.++++..++.+++. .........|||||||
T Consensus 79 ~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~q 151 (247)
T TIGR00972 79 ELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVK-------DRLHDSALGLSGGQQQ 151 (247)
T ss_pred HHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchh-------hHhhCCcccCCHHHHH
Confidence 77889999999999999999999997532100 012345666777777764442 1234556789999999
Q ss_pred HHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHHh
Q psy5743 549 RIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHLI 627 (644)
Q Consensus 549 RiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eLl 627 (644)
|++||||++++|+++||||||++||+.+...+.+.|+++.+++|+|+|||+++.+. .||+|++|++|++++.|+++++.
T Consensus 152 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 231 (247)
T TIGR00972 152 RLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIF 231 (247)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999999876789999999999875 59999999999999999999997
Q ss_pred cCCCcH
Q psy5743 628 KNPNSM 633 (644)
Q Consensus 628 ~~~~~~ 633 (644)
.++...
T Consensus 232 ~~~~~~ 237 (247)
T TIGR00972 232 TNPKEK 237 (247)
T ss_pred hCCCCh
Confidence 653333
No 84
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.7e-47 Score=394.13 Aligned_cols=220 Identities=33% Similarity=0.566 Sum_probs=195.2
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
.|+++||+-+|. +..+++|+||+|++||++++.||||||||||+++|+||.+|++|+|.+||+|+..+.+. ++.|
T Consensus 5 ~l~i~~v~k~yg---~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~i 79 (352)
T COG3842 5 ALEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRPI 79 (352)
T ss_pred eEEEEeeeeecC---CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hccc
Confidence 599999999996 46799999999999999999999999999999999999999999999999999998875 6789
Q ss_pred EEEecCCCCCc-ccHHHHHhcCCCCCCCCCH----HHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHH
Q psy5743 479 GSVSQEPTLFS-GTIYENILYGVNDSSSVTK----SDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIA 553 (644)
Q Consensus 479 ~~V~Q~~~Lf~-gTIreNI~~g~~~~~~~~~----~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLA 553 (644)
++|+|+--||. -||+|||.||-.-.....+ +++.++++.+++.++-.+.| ..|||||+||+|||
T Consensus 80 g~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p-----------~qLSGGQqQRVALA 148 (352)
T COG3842 80 GMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKP-----------HQLSGGQQQRVALA 148 (352)
T ss_pred ceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhCh-----------hhhChHHHHHHHHH
Confidence 99999999996 7999999999762111222 37888999999888766665 57999999999999
Q ss_pred HHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCch-HHhhcCEEEEEeCCeEEEecChhHHhcCC
Q psy5743 554 RALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLS-TIRKSNQICVLDKGKIVEIGSYAHLIKNP 630 (644)
Q Consensus 554 RAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~-~i~~aD~Iivl~~G~ive~Gt~~eLl~~~ 630 (644)
|||..+|++|+||||.||||.+-....+..++++.+ +.|.|+|||+-+ .+..+|||.||++|+|.+.||++|+...+
T Consensus 149 RAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P 228 (352)
T COG3842 149 RALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERP 228 (352)
T ss_pred HHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCc
Confidence 999999999999999999999988888888776543 889999999966 46889999999999999999999999876
Q ss_pred CcHH
Q psy5743 631 NSMF 634 (644)
Q Consensus 631 ~~~y 634 (644)
...|
T Consensus 229 ~~~f 232 (352)
T COG3842 229 ATRF 232 (352)
T ss_pred chHH
Confidence 5544
No 85
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-46 Score=383.45 Aligned_cols=226 Identities=33% Similarity=0.485 Sum_probs=191.1
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCC-----CCcEEEECCccCCC--CCh
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDP-----QNGKILIDGVDIKE--LDP 471 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p-----~~G~I~idg~~i~~--~~~ 471 (644)
-|+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++.. .+.
T Consensus 7 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (254)
T PRK14273 7 IIETENLNLFYTD---FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDI 83 (254)
T ss_pred eEEEeeeEEEeCC---ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccH
Confidence 5999999999963 4699999999999999999999999999999999999997 48999999999863 345
Q ss_pred HHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCC----CHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHH
Q psy5743 472 MYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSV----TKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQK 547 (644)
Q Consensus 472 ~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~----~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQk 547 (644)
..+|+.++||+|++.+|+.|++|||.++....... .++++.++++.+++.+.+ ++.+++ ...+||||||
T Consensus 84 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~~~~~----~~~~LSgG~~ 156 (254)
T PRK14273 84 LELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEV---KDKLNT----NALSLSGGQQ 156 (254)
T ss_pred HHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhh---HHHHhC----CcccCCHHHH
Confidence 67888999999999999999999999864211001 134556666666654332 334444 4678999999
Q ss_pred HHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhHH
Q psy5743 548 QRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHL 626 (644)
Q Consensus 548 QRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~eL 626 (644)
||++||||++++|++|||||||++||..+...+.+.|.++.+++|+|+|||+++.+ ..||+|++|++|++++.|+++++
T Consensus 157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 236 (254)
T PRK14273 157 QRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDEL 236 (254)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999999987789999999999987 45999999999999999999999
Q ss_pred hcCCCcHH
Q psy5743 627 IKNPNSMF 634 (644)
Q Consensus 627 l~~~~~~y 634 (644)
.+++...|
T Consensus 237 ~~~~~~~~ 244 (254)
T PRK14273 237 FFNPKNTK 244 (254)
T ss_pred HhCCCChH
Confidence 86543333
No 86
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.4e-47 Score=384.12 Aligned_cols=221 Identities=32% Similarity=0.525 Sum_probs=190.6
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCC-----CCCcEEEECCccCCC--CCh
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD-----PQNGKILIDGVDIKE--LDP 471 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~-----p~~G~I~idg~~i~~--~~~ 471 (644)
.|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.+||+++.. .+.
T Consensus 6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (253)
T PRK14242 6 KMEARGLSFFYGD---FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDV 82 (253)
T ss_pred EEEEeeeEEEECC---eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCH
Confidence 5999999999963 469999999999999999999999999999999999975 689999999999875 345
Q ss_pred HHHhcceEEEecCCCCCcccHHHHHhcCCCCCC----CCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHH
Q psy5743 472 MYLRSQIGSVSQEPTLFSGTIYENILYGVNDSS----SVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQK 547 (644)
Q Consensus 472 ~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~----~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQk 547 (644)
..+|+.++||+|++.+|..|++||+.++..... ...++++.++++..++.+++. +.......+||||||
T Consensus 83 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgGq~ 155 (253)
T PRK14242 83 VELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVK-------DRLHESALGLSGGQQ 155 (253)
T ss_pred HHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCCHHHH
Confidence 678899999999999999999999998632100 012345666777777655443 234566789999999
Q ss_pred HHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhHH
Q psy5743 548 QRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHL 626 (644)
Q Consensus 548 QRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~eL 626 (644)
||++||||++++|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+ +.||+|++|++|++++.|+++++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14242 156 QRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQI 235 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999999987789999999999988 45999999999999999999999
Q ss_pred hcC
Q psy5743 627 IKN 629 (644)
Q Consensus 627 l~~ 629 (644)
.+.
T Consensus 236 ~~~ 238 (253)
T PRK14242 236 FTR 238 (253)
T ss_pred HcC
Confidence 864
No 87
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.1e-47 Score=363.34 Aligned_cols=229 Identities=33% Similarity=0.454 Sum_probs=188.8
Q ss_pred cEEEEEEEEEcCCCC-CCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCC-hHHHhc
Q psy5743 399 EIDFNNIRFSYPSRP-DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELD-PMYLRS 476 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~-~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~-~~~lr~ 476 (644)
-++++|+++.|+... ..++++||||+|.+||+++|||+||||||||+++|+|+.+|++|+|.+||.++.... .+..++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 489999999997521 115999999999999999999999999999999999999999999999998776543 446788
Q ss_pred ceEEEecCCC-CCc--ccHHHHHhcCCC-CCCCCCHHHHHHHHHHHhhccch-hhhhcCccccccCCCCCCChhHHHHHH
Q psy5743 477 QIGSVSQEPT-LFS--GTIYENILYGVN-DSSSVTKSDIIHAAKEANAYGFV-IDFKNGFDTIVGERGIMLSGGQKQRIA 551 (644)
Q Consensus 477 ~i~~V~Q~~~-Lf~--gTIreNI~~g~~-~~~~~~~~~i~~a~~~a~l~~~i-~~lp~Gl~T~ige~G~~LSGGQkQRia 551 (644)
.+-+|+|||+ =+| -||++-|.=.-. ...+-..++++++++.+++.+.. .+.| ..|||||+||||
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P-----------~eLSGGQ~QRia 151 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRP-----------HELSGGQRQRIA 151 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCc-----------hhcChhHHHHHH
Confidence 8999999998 222 456655542110 00113456688899999986533 3344 579999999999
Q ss_pred HHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCc--eEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHHhc
Q psy5743 552 IARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGK--TVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHLIK 628 (644)
Q Consensus 552 LARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~--TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eLl~ 628 (644)
|||||.-+|++||||||||+||......|.+.+.++.+++ |.|+|||+++.+. .||||+||++|+++|.++-+++..
T Consensus 152 IARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~ 231 (252)
T COG1124 152 IARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLS 231 (252)
T ss_pred HHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhc
Confidence 9999999999999999999999999999999998887655 9999999999985 599999999999999999999987
Q ss_pred CCCcHHHHHH
Q psy5743 629 NPNSMFNKLM 638 (644)
Q Consensus 629 ~~~~~y~~l~ 638 (644)
.+...|.+..
T Consensus 232 ~~~h~ytr~L 241 (252)
T COG1124 232 HPSHPYTREL 241 (252)
T ss_pred CCccHHHHHH
Confidence 6455665543
No 88
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=4.9e-47 Score=381.89 Aligned_cols=220 Identities=30% Similarity=0.511 Sum_probs=184.7
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHH-hcce
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYL-RSQI 478 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~l-r~~i 478 (644)
|+++|++++|++ +++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+ |+.+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (236)
T cd03219 1 LEVRGLTKRFGG---LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI 77 (236)
T ss_pred CeeeeeEEEECC---EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCE
Confidence 478999999963 469999999999999999999999999999999999999999999999999998887665 5679
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCCCCCCC---------CHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHH
Q psy5743 479 GSVSQEPTLFSG-TIYENILYGVNDSSSV---------TKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQ 548 (644)
Q Consensus 479 ~~V~Q~~~Lf~g-TIreNI~~g~~~~~~~---------~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQ 548 (644)
+||+|++.+|.+ |++|||.++....... +.++..+ .+++.++.+ |++.........|||||||
T Consensus 78 ~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~q 150 (236)
T cd03219 78 GRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARE-----RAEELLERV--GLADLADRPAGELSYGQQR 150 (236)
T ss_pred EEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHH-----HHHHHHHHc--CccchhhCChhhCCHHHHH
Confidence 999999999987 9999999874321000 1111111 112233332 4555556667789999999
Q ss_pred HHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhh-cCEEEEEeCCeEEEecChhHH
Q psy5743 549 RIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHL 626 (644)
Q Consensus 549 RiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~~-aD~Iivl~~G~ive~Gt~~eL 626 (644)
|++||||++.+|+++||||||++||+.+.+.+.+.|.++. +++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 151 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 230 (236)
T cd03219 151 RLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEV 230 (236)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHh
Confidence 9999999999999999999999999999999999998875 57899999999999855 999999999999999999998
Q ss_pred hcC
Q psy5743 627 IKN 629 (644)
Q Consensus 627 l~~ 629 (644)
..+
T Consensus 231 ~~~ 233 (236)
T cd03219 231 RNN 233 (236)
T ss_pred ccC
Confidence 753
No 89
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=5.5e-47 Score=399.50 Aligned_cols=210 Identities=35% Similarity=0.492 Sum_probs=182.4
Q ss_pred CCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHH----hcceEEEecCCCCCc
Q psy5743 414 DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYL----RSQIGSVSQEPTLFS 489 (644)
Q Consensus 414 ~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~l----r~~i~~V~Q~~~Lf~ 489 (644)
++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++||.|+..+++.++ |+.++||+|++.+|+
T Consensus 5 ~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~ 84 (363)
T TIGR01186 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFP 84 (363)
T ss_pred CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCC
Confidence 3568999999999999999999999999999999999999999999999999999999888 789999999999997
Q ss_pred -ccHHHHHhcCCCCCCCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEE
Q psy5743 490 -GTIYENILYGVNDSSSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILL 564 (644)
Q Consensus 490 -gTIreNI~~g~~~~~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~Ili 564 (644)
.|++|||.++.+.. ..+ ++++.++++.+++.++. .....+||||||||++|||||+++|+|||
T Consensus 85 ~~TV~eNi~~~~~~~-~~~~~~~~~~~~~~l~~vgL~~~~-----------~~~p~~LSGGq~QRV~lARAL~~~p~iLL 152 (363)
T TIGR01186 85 HMTILQNTSLGPELL-GWPEQERKEKALELLKLVGLEEYE-----------HRYPDELSGGMQQRVGLARALAAEPDILL 152 (363)
T ss_pred CCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhcCCchhh-----------hCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 59999999874321 122 34556666766665443 44455899999999999999999999999
Q ss_pred eecccCCCCHHHHHHHHHHHHHHc--CCceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhHHhcCCCcHHH
Q psy5743 565 LDEATSALDAENEYLVQSAIEKLI--EGKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHLIKNPNSMFN 635 (644)
Q Consensus 565 LDEaTSaLD~~~e~~i~~~l~~~~--~~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~eLl~~~~~~y~ 635 (644)
||||||+||+.+.+.+++.+.++. .++|+|+|||+++.+ +.||+|++|++|++++.|+++|+++++...|.
T Consensus 153 lDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~p~~~~~ 226 (363)
T TIGR01186 153 MDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEYV 226 (363)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhCcccHHH
Confidence 999999999999999999998874 379999999999975 66999999999999999999999876444443
No 90
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-46 Score=382.60 Aligned_cols=223 Identities=32% Similarity=0.511 Sum_probs=192.1
Q ss_pred CccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCC-----CCCcEEEECCccCCC--C
Q psy5743 397 KGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD-----PQNGKILIDGVDIKE--L 469 (644)
Q Consensus 397 ~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~-----p~~G~I~idg~~i~~--~ 469 (644)
.+.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. .
T Consensus 11 ~~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~ 87 (260)
T PRK10744 11 PSKIQVRNLNFYYGK---FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQ 87 (260)
T ss_pred CceEEEEEEEEEeCC---eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcccccc
Confidence 346999999999963 469999999999999999999999999999999999996 589999999999863 4
Q ss_pred ChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChh
Q psy5743 470 DPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGG 545 (644)
Q Consensus 470 ~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGG 545 (644)
+...+|++++|++|++.+|..|++||+.++.......+ ++++.++++..++.+++. ..+.+...+||||
T Consensus 88 ~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G 160 (260)
T PRK10744 88 DIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVK-------DKLHQSGYSLSGG 160 (260)
T ss_pred chHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhH-------HHHhcCCCCCCHH
Confidence 56678999999999999999999999998632110122 245666777777654332 3455677899999
Q ss_pred HHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh-hcCEEEEEeCCeEEEecChh
Q psy5743 546 QKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYA 624 (644)
Q Consensus 546 QkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~ 624 (644)
||||++||||++++|++|||||||++||..+.+.+.+.|+++.+++|+|+|||+++.+. .||+|++|++|++++.|+.+
T Consensus 161 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 240 (260)
T PRK10744 161 QQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTD 240 (260)
T ss_pred HHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999999877789999999999885 59999999999999999999
Q ss_pred HHhcC
Q psy5743 625 HLIKN 629 (644)
Q Consensus 625 eLl~~ 629 (644)
++...
T Consensus 241 ~~~~~ 245 (260)
T PRK10744 241 TIFTK 245 (260)
T ss_pred HHHhC
Confidence 98764
No 91
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.3e-47 Score=399.10 Aligned_cols=219 Identities=36% Similarity=0.521 Sum_probs=190.3
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++...++ .++.+
T Consensus 6 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~--~~r~i 80 (351)
T PRK11432 6 FVVLKNITKRFGS---NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSI--QQRDI 80 (351)
T ss_pred EEEEEeEEEEECC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCE
Confidence 5999999999963 468999999999999999999999999999999999999999999999999987664 46789
Q ss_pred EEEecCCCCCc-ccHHHHHhcCCCCCCCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHH
Q psy5743 479 GSVSQEPTLFS-GTIYENILYGVNDSSSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIA 553 (644)
Q Consensus 479 ~~V~Q~~~Lf~-gTIreNI~~g~~~~~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLA 553 (644)
+||+|++.+|. .|++|||.|+.... ..+ ++++.++++..++.++..+. ...||||||||++||
T Consensus 81 g~vfQ~~~lfp~~tv~eNi~~~l~~~-~~~~~~~~~~v~~~l~~~gl~~~~~r~-----------~~~LSgGq~QRVaLA 148 (351)
T PRK11432 81 CMVFQSYALFPHMSLGENVGYGLKML-GVPKEERKQRVKEALELVDLAGFEDRY-----------VDQISGGQQQRVALA 148 (351)
T ss_pred EEEeCCcccCCCCCHHHHHHHHHhHc-CCCHHHHHHHHHHHHHHcCCchhhcCC-----------hhhCCHHHHHHHHHH
Confidence 99999999997 59999999974311 122 34566777777775544333 458999999999999
Q ss_pred HHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhHHhcCC
Q psy5743 554 RALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHLIKNP 630 (644)
Q Consensus 554 RAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~eLl~~~ 630 (644)
|||+++|++|+||||||+||+.+...+.+.|+++.+ ++|+|+|||+++.+ ..||+|++|++|+|++.|+++++.+++
T Consensus 149 RaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~p 228 (351)
T PRK11432 149 RALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQP 228 (351)
T ss_pred HHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 999999999999999999999999999999988754 78999999999987 669999999999999999999998765
Q ss_pred CcHH
Q psy5743 631 NSMF 634 (644)
Q Consensus 631 ~~~y 634 (644)
...|
T Consensus 229 ~~~~ 232 (351)
T PRK11432 229 ASRF 232 (351)
T ss_pred CchH
Confidence 5444
No 92
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=4e-47 Score=377.30 Aligned_cols=206 Identities=32% Similarity=0.537 Sum_probs=176.1
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChH---HHhc
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPM---YLRS 476 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~---~lr~ 476 (644)
|+++|++++|++. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++.. .+|+
T Consensus 2 l~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 2 IRFEQVSKAYPGG-HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred eEEEEEEEEecCC-CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 6899999999642 34699999999999999999999999999999999999999999999999999877644 4788
Q ss_pred ceEEEecCCCCCc-ccHHHHHhcCCCCC---CCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHH
Q psy5743 477 QIGSVSQEPTLFS-GTIYENILYGVNDS---SSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAI 552 (644)
Q Consensus 477 ~i~~V~Q~~~Lf~-gTIreNI~~g~~~~---~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaL 552 (644)
.++|++|++.+|. .|++||+.++.... ....++++.++++..++.++..+.| .+||||||||++|
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LSgG~~qrv~l 149 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALP-----------MQLSGGEQQRVAI 149 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHHHHHH
Confidence 9999999999987 59999998752110 0012456677777777655443333 4799999999999
Q ss_pred HHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHh-hcCEEEEEeCCeE
Q psy5743 553 ARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIR-KSNQICVLDKGKI 617 (644)
Q Consensus 553 ARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~-~aD~Iivl~~G~i 617 (644)
||||+++|++|||||||++||+++.+.+.+.|.++. +++|+|+|||+++.+. .||+|++|++|+|
T Consensus 150 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 150 ARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999998874 3789999999999986 5899999999985
No 93
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-46 Score=380.01 Aligned_cols=214 Identities=30% Similarity=0.487 Sum_probs=181.7
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++
T Consensus 3 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 77 (239)
T cd03296 3 IEVRNVSKRFGD---FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNVG 77 (239)
T ss_pred EEEEeEEEEECC---EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccceE
Confidence 789999999963 469999999999999999999999999999999999999999999999999876654 367899
Q ss_pred EEecCCCCCc-ccHHHHHhcCCCCCCC---CC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHH
Q psy5743 480 SVSQEPTLFS-GTIYENILYGVNDSSS---VT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIA 551 (644)
Q Consensus 480 ~V~Q~~~Lf~-gTIreNI~~g~~~~~~---~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRia 551 (644)
||+|+|.+|. .|++||+.++...... .+ ++++.++++..++.+ ........||||||||++
T Consensus 78 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LS~G~~qrl~ 146 (239)
T cd03296 78 FVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDW-----------LADRYPAQLSGGQRQRVA 146 (239)
T ss_pred EEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChh-----------hhhcChhhCCHHHHHHHH
Confidence 9999999996 6999999986421000 01 223444455555433 233445689999999999
Q ss_pred HHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhHHhc
Q psy5743 552 IARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHLIK 628 (644)
Q Consensus 552 LARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~eLl~ 628 (644)
|||||+++|++|||||||++||+++.+.+.+.|.++.+ ++|+|+|||+++.+ ..||+|++|++|++++.|+++++.+
T Consensus 147 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (239)
T cd03296 147 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYD 226 (239)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhc
Confidence 99999999999999999999999999999999988753 68999999999986 4599999999999999999999976
Q ss_pred C
Q psy5743 629 N 629 (644)
Q Consensus 629 ~ 629 (644)
.
T Consensus 227 ~ 227 (239)
T cd03296 227 H 227 (239)
T ss_pred C
Confidence 4
No 94
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.2e-47 Score=387.73 Aligned_cols=214 Identities=30% Similarity=0.528 Sum_probs=187.8
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
-|+++|++++|++ .+++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 4 ~l~~~~l~~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 81 (274)
T PRK13647 4 IIEVEDLHFRYKD--GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV 81 (274)
T ss_pred eEEEEEEEEEeCC--CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhE
Confidence 3899999999963 34699999999999999999999999999999999999999999999999999988888889999
Q ss_pred EEEecCC--CCCcccHHHHHhcCCCCCCCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHH
Q psy5743 479 GSVSQEP--TLFSGTIYENILYGVNDSSSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAI 552 (644)
Q Consensus 479 ~~V~Q~~--~Lf~gTIreNI~~g~~~~~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaL 552 (644)
+||+|+| .+|..|++||+.++... ...+ ++++.++++..++.++..+.| ..||||||||++|
T Consensus 82 ~~v~q~~~~~~~~~tv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LSgG~~qrv~l 149 (274)
T PRK13647 82 GLVFQDPDDQVFSSTVWDDVAFGPVN-MGLDKDEVERRVEEALKAVRMWDFRDKPP-----------YHLSYGQKKRVAI 149 (274)
T ss_pred EEEecChhhhhccCcHHHHHHhhHHH-cCCCHHHHHHHHHHHHHHCCCHHHhcCCh-----------hhCCHHHHHHHHH
Confidence 9999998 68899999999987321 1122 245666777777765544443 4799999999999
Q ss_pred HHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhHH
Q psy5743 553 ARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHL 626 (644)
Q Consensus 553 ARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~eL 626 (644)
||||+.+|++|||||||++||+.+...+.+.|+++. +++|+|+|||+++.+ +.||+|++|++|++++.|+++++
T Consensus 150 araL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 150 AGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred HHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 999999999999999999999999999999998874 378999999999998 56999999999999999998765
No 95
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1e-46 Score=380.93 Aligned_cols=215 Identities=36% Similarity=0.523 Sum_probs=183.9
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCC---hHHHhc
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELD---PMYLRS 476 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~---~~~lr~ 476 (644)
|+++|++++|++ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+ ...+|+
T Consensus 1 l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (241)
T cd03256 1 IEVENLSKTYPN--GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRR 78 (241)
T ss_pred CEEeeEEEecCC--ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHh
Confidence 478999999964 256999999999999999999999999999999999999999999999999998877 456788
Q ss_pred ceEEEecCCCCCc-ccHHHHHhcCCCCC-----------CCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCCh
Q psy5743 477 QIGSVSQEPTLFS-GTIYENILYGVNDS-----------SSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSG 544 (644)
Q Consensus 477 ~i~~V~Q~~~Lf~-gTIreNI~~g~~~~-----------~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSG 544 (644)
.++||+|++.+|. .|++||+.++.... ....++++.++++..++ +.........|||
T Consensus 79 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~ 147 (241)
T cd03256 79 QIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGL-----------LDKAYQRADQLSG 147 (241)
T ss_pred ccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCC-----------hhhhCCCcccCCH
Confidence 9999999999887 69999998753210 00122334444444443 3334556778999
Q ss_pred hHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc--CCceEEEEccCchHHh-hcCEEEEEeCCeEEEec
Q psy5743 545 GQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI--EGKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIG 621 (644)
Q Consensus 545 GQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~--~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~G 621 (644)
|||||++||||++++|++||||||||+||+.+...+.+.|+++. .++|+|+|||+++.+. .||+|++|++|++++.|
T Consensus 148 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~ 227 (241)
T cd03256 148 GQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDG 227 (241)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeec
Confidence 99999999999999999999999999999999999999999875 3789999999999987 79999999999999999
Q ss_pred ChhHHh
Q psy5743 622 SYAHLI 627 (644)
Q Consensus 622 t~~eLl 627 (644)
+++++.
T Consensus 228 ~~~~~~ 233 (241)
T cd03256 228 PPAELT 233 (241)
T ss_pred CHHHhh
Confidence 999874
No 96
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=1.3e-46 Score=370.09 Aligned_cols=200 Identities=36% Similarity=0.533 Sum_probs=182.5
Q ss_pred EEEEEEEEEcCCCCC--CccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcc
Q psy5743 400 IDFNNIRFSYPSRPD--AVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQ 477 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~--~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~ 477 (644)
|+++||+++|++..+ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 578999999975211 3699999999999999999999999999999999999999999999999 7
Q ss_pred eEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHc
Q psy5743 478 IGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALI 557 (644)
Q Consensus 478 i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll 557 (644)
|+|++|+|.+|++|++||+.++.. .++++..++++.+++.+++..+|.|++|.+.+.+..||||||||++||||++
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~ 143 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGKP----FDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVY 143 (204)
T ss_pred EEEEecCchhccCcHHHHhccCCC----cCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHh
Confidence 999999999999999999999743 4566788888888999999999999999999999999999999999999999
Q ss_pred cCCCEEEeecccCCCCHHHHHHHHHH-HHHHc-CCceEEEEccCchHHhhcCEEEEEeCCe
Q psy5743 558 KKSKILLLDEATSALDAENEYLVQSA-IEKLI-EGKTVLTIAHRLSTIRKSNQICVLDKGK 616 (644)
Q Consensus 558 ~~p~IliLDEaTSaLD~~~e~~i~~~-l~~~~-~~~TvI~IaHrl~~i~~aD~Iivl~~G~ 616 (644)
.+|+++||||||++||+++.+.+.+. +.+.. +++|+|+|||+++.+..||+|++|++|+
T Consensus 144 ~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 144 SDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred cCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 99999999999999999998888874 55543 4689999999999998999999999985
No 97
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-46 Score=385.98 Aligned_cols=219 Identities=32% Similarity=0.518 Sum_probs=186.6
Q ss_pred EEEEEEEEEcCCCC--CCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCC--hHHHh
Q psy5743 400 IDFNNIRFSYPSRP--DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELD--PMYLR 475 (644)
Q Consensus 400 I~~~~vsf~Y~~~~--~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~--~~~lr 475 (644)
|+++||+|+|++.. .+++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++...+ ...+|
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 78999999997421 247999999999999999999999999999999999999999999999999998754 45788
Q ss_pred cceEEEecCC--CCCcccHHHHHhcCCCCCCCCCHH----HHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHH
Q psy5743 476 SQIGSVSQEP--TLFSGTIYENILYGVNDSSSVTKS----DIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQR 549 (644)
Q Consensus 476 ~~i~~V~Q~~--~Lf~gTIreNI~~g~~~~~~~~~~----~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQR 549 (644)
+++|||+|+| .+|+.|++|||.++... ...+.+ ++.++++.+++. +.+........||||||||
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~gL~---------~~~~~~~~~~~LSgGq~qr 152 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPIN-LGLSEEEIENRVKRAMNIVGLD---------YEDYKDKSPFELSGGQKRR 152 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHH-CCCCHHHHHHHHHHHHHHcCCC---------chhhccCCcccCCHHHHHH
Confidence 9999999998 68899999999986321 113443 344555555543 1133445567899999999
Q ss_pred HHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhHH
Q psy5743 550 IAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHL 626 (644)
Q Consensus 550 iaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~eL 626 (644)
++|||||+.+|++|||||||++||+.+...+.+.|.++.+ ++|+|+|||+++.+ +.||+|++|++|++++.|+.+++
T Consensus 153 v~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~ 232 (287)
T PRK13637 153 VAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREV 232 (287)
T ss_pred HHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999988753 78999999999987 56999999999999999999998
Q ss_pred hc
Q psy5743 627 IK 628 (644)
Q Consensus 627 l~ 628 (644)
.+
T Consensus 233 ~~ 234 (287)
T PRK13637 233 FK 234 (287)
T ss_pred Hh
Confidence 65
No 98
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=1e-46 Score=375.53 Aligned_cols=213 Identities=26% Similarity=0.409 Sum_probs=181.2
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
|+++||+++|++. ++++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++... ...++++++
T Consensus 1 l~~~~l~~~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 78 (220)
T cd03263 1 LQIRNLTKTYKKG-TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTD-RKAARQSLG 78 (220)
T ss_pred CEEEeeEEEeCCC-CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc-hHHHhhhEE
Confidence 5789999999742 25799999999999999999999999999999999999999999999999998764 367788999
Q ss_pred EEecCCCCC-cccHHHHHhcCCCCCCCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHH
Q psy5743 480 SVSQEPTLF-SGTIYENILYGVNDSSSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIAR 554 (644)
Q Consensus 480 ~V~Q~~~Lf-~gTIreNI~~g~~~~~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLAR 554 (644)
||+|++.+| +.|++||+.++.... ..+ ++++.++++..++.+. +++ ....||||||||++|||
T Consensus 79 ~v~q~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~-------~~~----~~~~LS~G~~qrv~la~ 146 (220)
T cd03263 79 YCPQFDALFDELTVREHLRFYARLK-GLPKSEIKEEVELLLRVLGLTDK-------ANK----RARTLSGGMKRKLSLAI 146 (220)
T ss_pred EecCcCCccccCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCHHH-------HhC----hhhhCCHHHHHHHHHHH
Confidence 999999999 579999998753110 012 2334455555554322 233 34579999999999999
Q ss_pred HHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHH
Q psy5743 555 ALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHL 626 (644)
Q Consensus 555 All~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eL 626 (644)
|++++|+++||||||++||+.+.+.+.+.|.++.+++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 147 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 147 ALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred HHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 99999999999999999999999999999999877899999999999985 5999999999999999998875
No 99
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-46 Score=386.69 Aligned_cols=218 Identities=34% Similarity=0.543 Sum_probs=191.7
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
-|+++||+++|++ ..+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++...+...+++.+
T Consensus 5 ~l~~~~l~~~~~~-~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13635 5 IIRVEHISFRYPD-AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV 83 (279)
T ss_pred eEEEEEEEEEeCC-CCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence 3899999999964 235699999999999999999999999999999999999999999999999999988888888999
Q ss_pred EEEecCC--CCCcccHHHHHhcCCCCCCCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHH
Q psy5743 479 GSVSQEP--TLFSGTIYENILYGVNDSSSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAI 552 (644)
Q Consensus 479 ~~V~Q~~--~Lf~gTIreNI~~g~~~~~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaL 552 (644)
+|++|++ .+++.|++|||.++.... ..+ ++++.++++..++.+++...| ..||||||||++|
T Consensus 84 ~~~~q~~~~~~~~~tv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~qrv~l 151 (279)
T PRK13635 84 GMVFQNPDNQFVGATVQDDVAFGLENI-GVPREEMVERVDQALRQVGMEDFLNREP-----------HRLSGGQKQRVAI 151 (279)
T ss_pred EEEEeCHHHhcccccHHHHHhhhHhhC-CCCHHHHHHHHHHHHHHcCChhhhhCCc-----------ccCCHHHHHHHHH
Confidence 9999998 577889999999863221 122 244666777777766555444 4899999999999
Q ss_pred HHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHhhcCEEEEEeCCeEEEecChhHHhcC
Q psy5743 553 ARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKN 629 (644)
Q Consensus 553 ARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eLl~~ 629 (644)
||||+.+|++|||||||++||+.+.+.+.+.|.++.+ ++|+|+|||+++.+..||+|++|++|++++.|+.+++.+.
T Consensus 152 aral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13635 152 AGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKS 230 (279)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcC
Confidence 9999999999999999999999999999999998764 7899999999999999999999999999999999988753
No 100
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.2e-46 Score=381.12 Aligned_cols=228 Identities=32% Similarity=0.486 Sum_probs=191.6
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCC-----CcEEEECCccCC--CCCh
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQ-----NGKILIDGVDIK--ELDP 471 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~-----~G~I~idg~~i~--~~~~ 471 (644)
.|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.+||.++. ..+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (253)
T PRK14267 4 AIETVNLRVYYGS---NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDP 80 (253)
T ss_pred eEEEEeEEEEeCC---eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccCh
Confidence 4899999999963 46999999999999999999999999999999999999874 999999999997 4566
Q ss_pred HHHhcceEEEecCCCCCcc-cHHHHHhcCCCCCC-----CCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChh
Q psy5743 472 MYLRSQIGSVSQEPTLFSG-TIYENILYGVNDSS-----SVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGG 545 (644)
Q Consensus 472 ~~lr~~i~~V~Q~~~Lf~g-TIreNI~~g~~~~~-----~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGG 545 (644)
..+|++++|++|++.+|.+ |++||+.++..... ...++++.++++..++.+++.. ........||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G 153 (253)
T PRK14267 81 IEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKD-------RLNDYPSNLSGG 153 (253)
T ss_pred HHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhh-------hhccChhhCCHH
Confidence 6788899999999999976 99999987531100 0112345666666666544322 234566789999
Q ss_pred HHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh-hcCEEEEEeCCeEEEecChh
Q psy5743 546 QKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYA 624 (644)
Q Consensus 546 QkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~ 624 (644)
||||++||||++++|+++||||||++||+.+.+.+.+.|.++.+++|+|+|||+++.+. .||+|++|++|++++.|+++
T Consensus 154 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 233 (253)
T PRK14267 154 QRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTR 233 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999999877799999999999875 59999999999999999999
Q ss_pred HHhcCCCcHHHH
Q psy5743 625 HLIKNPNSMFNK 636 (644)
Q Consensus 625 eLl~~~~~~y~~ 636 (644)
++.+.+...+.+
T Consensus 234 ~~~~~~~~~~~~ 245 (253)
T PRK14267 234 KVFENPEHELTE 245 (253)
T ss_pred HHHhCCCcHHHH
Confidence 998653323433
No 101
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-46 Score=386.46 Aligned_cols=218 Identities=28% Similarity=0.491 Sum_probs=184.9
Q ss_pred EEEEEEEEEcCCCC--CCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCC----CChHH
Q psy5743 400 IDFNNIRFSYPSRP--DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKE----LDPMY 473 (644)
Q Consensus 400 I~~~~vsf~Y~~~~--~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~----~~~~~ 473 (644)
|+++||+|+|++.. .+++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. .+...
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 78999999997422 1369999999999999999999999999999999999999999999999999863 34567
Q ss_pred HhcceEEEecCC--CCCcccHHHHHhcCCCCCCCCCHHH----HHHHHHHHhhccchhhhhcCccccccCCCCCCChhHH
Q psy5743 474 LRSQIGSVSQEP--TLFSGTIYENILYGVNDSSSVTKSD----IIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQK 547 (644)
Q Consensus 474 lr~~i~~V~Q~~--~Lf~gTIreNI~~g~~~~~~~~~~~----i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQk 547 (644)
+|+.++||+|+| .+|+.|+.||+.|+.... ..+.++ +.++++..++.+ .........||||||
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~L~~----------~~~~~~~~~LSgGqk 150 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNF-GIPKEKAEKIAAEKLEMVGLAD----------EFWEKSPFELSGGQM 150 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHc-CCCHHHHHHHHHHHHHHcCCCh----------hhccCCcccCCHHHH
Confidence 899999999998 799999999999874321 123333 344444445421 122355678999999
Q ss_pred HHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhH
Q psy5743 548 QRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAH 625 (644)
Q Consensus 548 QRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~e 625 (644)
||++|||||+.+|++|||||||++||+.+.+.+.+.|.++. .++|+|+|||+++.+ ..||+|++|++|++++.|++++
T Consensus 151 qrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~ 230 (288)
T PRK13643 151 RRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSD 230 (288)
T ss_pred HHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999998875 478999999999987 5699999999999999999999
Q ss_pred Hhc
Q psy5743 626 LIK 628 (644)
Q Consensus 626 Ll~ 628 (644)
+.+
T Consensus 231 ~~~ 233 (288)
T PRK13643 231 VFQ 233 (288)
T ss_pred HHc
Confidence 875
No 102
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=1.9e-46 Score=374.10 Aligned_cols=216 Identities=31% Similarity=0.469 Sum_probs=181.0
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHH-hcce
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYL-RSQI 478 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~l-r~~i 478 (644)
|+++||+++|++ .++++|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.++...+.... |+.+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (222)
T cd03224 1 LEVENLNAGYGK---SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGI 77 (222)
T ss_pred CEEeeEEeecCC---eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCe
Confidence 578999999963 469999999999999999999999999999999999999999999999999988887664 6779
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCCCCCC-CCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHH
Q psy5743 479 GSVSQEPTLFSG-TIYENILYGVNDSSS-VTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARAL 556 (644)
Q Consensus 479 ~~V~Q~~~Lf~g-TIreNI~~g~~~~~~-~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAl 556 (644)
+|++|++.+|.+ |++||+.++.+.... ...+++.++++.. . +++.........||||||||++||||+
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~------~----~l~~~~~~~~~~LS~G~~qrv~laral 147 (222)
T cd03224 78 GYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELF------P----RLKERRKQLAGTLSGGEQQMLAIARAL 147 (222)
T ss_pred EEeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHH------H----hhhhhhhCchhhCCHHHHHHHHHHHHH
Confidence 999999999987 999999987542100 0111222222222 1 123334455678999999999999999
Q ss_pred ccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhHHhc
Q psy5743 557 IKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHLIK 628 (644)
Q Consensus 557 l~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~eLl~ 628 (644)
+++|++++|||||++||+++...+.+.|+++. .++|+|++||+++.+ ..||+|++|++|++++.|+.+++.+
T Consensus 148 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (222)
T cd03224 148 MSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221 (222)
T ss_pred hcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHhc
Confidence 99999999999999999999999999998875 478999999999986 5599999999999999999988753
No 103
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=2e-46 Score=396.00 Aligned_cols=219 Identities=31% Similarity=0.484 Sum_probs=190.0
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
.|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+..+. ++.+
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~i 78 (353)
T TIGR03265 4 YLSIDNIRKRFGA---FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDY 78 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 4899999999963 4689999999999999999999999999999999999999999999999999887664 6789
Q ss_pred EEEecCCCCCc-ccHHHHHhcCCCCCCCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHH
Q psy5743 479 GSVSQEPTLFS-GTIYENILYGVNDSSSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIA 553 (644)
Q Consensus 479 ~~V~Q~~~Lf~-gTIreNI~~g~~~~~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLA 553 (644)
+||+|++.+|. .|++|||.|+.... ..+ ++++.++++..++.++.. .....||||||||++||
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~-~~~~~~~~~~~~~~l~~l~L~~~~~-----------~~~~~LSgGq~QRvaLA 146 (353)
T TIGR03265 79 GIVFQSYALFPNLTVADNIAYGLKNR-GMGRAEVAERVAELLDLVGLPGSER-----------KYPGQLSGGQQQRVALA 146 (353)
T ss_pred EEEeCCcccCCCCcHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCCchhh-----------CChhhCCHHHHHHHHHH
Confidence 99999999996 69999999974321 122 345566666666655443 44468999999999999
Q ss_pred HHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhHHhcCC
Q psy5743 554 RALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHLIKNP 630 (644)
Q Consensus 554 RAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~eLl~~~ 630 (644)
|||+++|++++||||||+||..+...+.+.|+++.+ +.|+|+|||+++.+ ..||+|++|++|++++.|+++|+.+++
T Consensus 147 RaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p 226 (353)
T TIGR03265 147 RALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHP 226 (353)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 999999999999999999999999999999988754 78999999999986 669999999999999999999999865
Q ss_pred CcHH
Q psy5743 631 NSMF 634 (644)
Q Consensus 631 ~~~y 634 (644)
...|
T Consensus 227 ~~~~ 230 (353)
T TIGR03265 227 ATPF 230 (353)
T ss_pred CCHH
Confidence 5444
No 104
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=1.8e-46 Score=379.46 Aligned_cols=215 Identities=33% Similarity=0.494 Sum_probs=182.5
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCCh---HHHhc
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDP---MYLRS 476 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~---~~lr~ 476 (644)
|+++||+++|+. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++..++. ..+|+
T Consensus 2 l~~~~l~~~~~~--~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (243)
T TIGR02315 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR 79 (243)
T ss_pred eEEEeeeeecCC--CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHh
Confidence 689999999962 3569999999999999999999999999999999999999999999999999987764 34688
Q ss_pred ceEEEecCCCCCc-ccHHHHHhcCCCCC-----------CCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCCh
Q psy5743 477 QIGSVSQEPTLFS-GTIYENILYGVNDS-----------SSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSG 544 (644)
Q Consensus 477 ~i~~V~Q~~~Lf~-gTIreNI~~g~~~~-----------~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSG 544 (644)
.++||+|++.+|. .|++||+.++.... ....++++.++++..++ +.........|||
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSg 148 (243)
T TIGR02315 80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGL-----------ADKAYQRADQLSG 148 (243)
T ss_pred heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCc-----------HhhhcCCcccCCH
Confidence 9999999999887 69999998764210 00112334444444444 3333456678999
Q ss_pred hHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHH-hhcCEEEEEeCCeEEEec
Q psy5743 545 GQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIG 621 (644)
Q Consensus 545 GQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~G 621 (644)
|||||++||||++++|++||||||||+||+++.+.+.+.|+++.+ ++|+|+|||+++.+ +.||+|++|++|++++.|
T Consensus 149 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~ 228 (243)
T TIGR02315 149 GQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDG 228 (243)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 999999999999999999999999999999999999999988753 78999999999998 469999999999999999
Q ss_pred ChhHHh
Q psy5743 622 SYAHLI 627 (644)
Q Consensus 622 t~~eLl 627 (644)
+++++.
T Consensus 229 ~~~~~~ 234 (243)
T TIGR02315 229 APSELD 234 (243)
T ss_pred CHHHhC
Confidence 999873
No 105
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-46 Score=382.06 Aligned_cols=223 Identities=33% Similarity=0.496 Sum_probs=191.4
Q ss_pred CccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCC-----CCcEEEECCccCCC--C
Q psy5743 397 KGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDP-----QNGKILIDGVDIKE--L 469 (644)
Q Consensus 397 ~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p-----~~G~I~idg~~i~~--~ 469 (644)
.+.|+++||+++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||.++.. .
T Consensus 17 ~~~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~ 93 (267)
T PRK14235 17 EIKMRARDVSVFYGE---KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRL 93 (267)
T ss_pred CceEEEEeEEEEECC---EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECccccc
Confidence 347999999999963 4699999999999999999999999999999999999975 89999999999875 3
Q ss_pred ChHHHhcceEEEecCCCCCcccHHHHHhcCCCCC-----CCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCCh
Q psy5743 470 DPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDS-----SSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSG 544 (644)
Q Consensus 470 ~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~-----~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSG 544 (644)
+...+|+.++||+|++.+|++|++||+.++.... ....++++.++++..++.+++. .........|||
T Consensus 94 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSg 166 (267)
T PRK14235 94 DVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVK-------DRLHEPGTGLSG 166 (267)
T ss_pred chHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCCH
Confidence 5667889999999999999999999999753100 0011345566777777654432 234566778999
Q ss_pred hHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHH-hhcCEEEEEeCCeEEEecCh
Q psy5743 545 GQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSY 623 (644)
Q Consensus 545 GQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~ 623 (644)
|||||++||||++.+|++|||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+ ..||+|++|++|++++.|++
T Consensus 167 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~ 246 (267)
T PRK14235 167 GQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDT 246 (267)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCH
Confidence 99999999999999999999999999999999999999999987788999999999998 55899999999999999999
Q ss_pred hHHhcC
Q psy5743 624 AHLIKN 629 (644)
Q Consensus 624 ~eLl~~ 629 (644)
+++...
T Consensus 247 ~~~~~~ 252 (267)
T PRK14235 247 EKMFTN 252 (267)
T ss_pred HHHHhC
Confidence 999754
No 106
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.3e-46 Score=378.34 Aligned_cols=218 Identities=33% Similarity=0.515 Sum_probs=186.2
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
++++||+++|++. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+...+|+.++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (242)
T cd03295 1 IEFENVTKRYGGG--KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIG 78 (242)
T ss_pred CEEEEEEEEeCCc--ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceE
Confidence 4789999999741 46999999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEecCCCCCc-ccHHHHHhcCCCCCCCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHH
Q psy5743 480 SVSQEPTLFS-GTIYENILYGVNDSSSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIAR 554 (644)
Q Consensus 480 ~V~Q~~~Lf~-gTIreNI~~g~~~~~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLAR 554 (644)
|++|++.+|. .|++||+.++... ...+ ++++.++++..++.+ +........+||||||||++|||
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~l~l~~---------~~~~~~~~~~LS~G~~qrv~lar 148 (242)
T cd03295 79 YVIQQIGLFPHMTVEENIALVPKL-LKWPKEKIRERADELLALVGLDP---------AEFADRYPHELSGGQQQRVGVAR 148 (242)
T ss_pred EEccCccccCCCcHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCCc---------HHHHhcChhhCCHHHHHHHHHHH
Confidence 9999999996 6999999876321 0112 233444455544432 01334556789999999999999
Q ss_pred HHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhHHhcC
Q psy5743 555 ALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHLIKN 629 (644)
Q Consensus 555 All~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~eLl~~ 629 (644)
|++++|+++||||||++||+++...+.+.|.++.+ ++|+|+|||+++.+ ..||+|++|++|++++.|+++++.+.
T Consensus 149 al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 226 (242)
T cd03295 149 ALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRS 226 (242)
T ss_pred HHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHcC
Confidence 99999999999999999999999999999998753 78999999999976 56999999999999999999998764
No 107
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.5e-46 Score=383.92 Aligned_cols=219 Identities=32% Similarity=0.512 Sum_probs=189.6
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
-|+++||+++|++....++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+...+|+.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 38999999999743334699999999999999999999999999999999999999999999999999888888889999
Q ss_pred EEEecCC--CCCcccHHHHHhcCCCCCCCCCHHH----HHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHH
Q psy5743 479 GSVSQEP--TLFSGTIYENILYGVNDSSSVTKSD----IIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAI 552 (644)
Q Consensus 479 ~~V~Q~~--~Lf~gTIreNI~~g~~~~~~~~~~~----i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaL 552 (644)
+||+|++ .+++.|+.|||.++... ...++++ +.++++.+++.++.. .....||||||||++|
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~l 151 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMEN-QGIPREEMIKRVDEALLAVNMLDFKT-----------REPARLSGGQKQRVAV 151 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHH-cCCCHHHHHHHHHHHHHHCCCHhHhh-----------CCcccCCHHHHHHHHH
Confidence 9999998 47789999999976321 1123333 455566666544322 2346899999999999
Q ss_pred HHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHhhcCEEEEEeCCeEEEecChhHHhcC
Q psy5743 553 ARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKN 629 (644)
Q Consensus 553 ARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eLl~~ 629 (644)
||||+++|+++||||||++||+.+.+.+.+.|.++.+ ++|+|+|||+++.+..||+|++|++|++++.|+++++++.
T Consensus 152 AraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (277)
T PRK13642 152 AGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFAT 230 (277)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999988754 7899999999999999999999999999999999998764
No 108
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-46 Score=385.10 Aligned_cols=222 Identities=33% Similarity=0.495 Sum_probs=185.5
Q ss_pred EEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHH----hc
Q psy5743 401 DFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYL----RS 476 (644)
Q Consensus 401 ~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~l----r~ 476 (644)
.++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+...+ ++
T Consensus 26 ~~~~~~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~ 102 (269)
T cd03294 26 SKEEILKKTGQ---TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRK 102 (269)
T ss_pred hhhhhhhhcCC---ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcC
Confidence 45677777753 468999999999999999999999999999999999999999999999999988776553 46
Q ss_pred ceEEEecCCCCCc-ccHHHHHhcCCCCC---CCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHH
Q psy5743 477 QIGSVSQEPTLFS-GTIYENILYGVNDS---SSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAI 552 (644)
Q Consensus 477 ~i~~V~Q~~~Lf~-gTIreNI~~g~~~~---~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaL 552 (644)
+++|++|++.+|. .|++||+.++.... ....++++.++++..++.+++.+.| .+||||||||++|
T Consensus 103 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Gq~qrv~l 171 (269)
T cd03294 103 KISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYP-----------DELSGGMQQRVGL 171 (269)
T ss_pred cEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCc-----------ccCCHHHHHHHHH
Confidence 7999999999995 69999998753210 0012345666677776655444333 4799999999999
Q ss_pred HHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhHHhcC
Q psy5743 553 ARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHLIKN 629 (644)
Q Consensus 553 ARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~eLl~~ 629 (644)
|||++++|+||||||||++||+.+.+.+.+.|.++.+ ++|+|++||+++.+ ..||+|++|++|++++.|+++|+++.
T Consensus 172 Aral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 251 (269)
T cd03294 172 ARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251 (269)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999999988753 78999999999987 56999999999999999999999865
Q ss_pred CCcHHHH
Q psy5743 630 PNSMFNK 636 (644)
Q Consensus 630 ~~~~y~~ 636 (644)
+...|.+
T Consensus 252 ~~~~~~~ 258 (269)
T cd03294 252 PANDYVR 258 (269)
T ss_pred cCcHHHH
Confidence 4444543
No 109
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.8e-46 Score=377.04 Aligned_cols=218 Identities=32% Similarity=0.509 Sum_probs=184.5
Q ss_pred EEEEEEEEEcCCCC-CCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHH---Hh
Q psy5743 400 IDFNNIRFSYPSRP-DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMY---LR 475 (644)
Q Consensus 400 I~~~~vsf~Y~~~~-~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~---lr 475 (644)
|+++|++++|++.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++...+... ++
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 68999999997421 127999999999999999999999999999999999999999999999999998876543 47
Q ss_pred cceEEEecCCCCCc-ccHHHHHhcCCCCCCCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHH
Q psy5743 476 SQIGSVSQEPTLFS-GTIYENILYGVNDSSSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRI 550 (644)
Q Consensus 476 ~~i~~V~Q~~~Lf~-gTIreNI~~g~~~~~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRi 550 (644)
+.++|++|++.+|. .|++||+.++.... ..+ .+++.++++..++.+. .......||||||||+
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv 149 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIA-GVPKAEIEERVLELLELVGLEDK-----------ADAYPAQLSGGQKQRV 149 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHCCChhh-----------hhcChhhCCHHHHHHH
Confidence 88999999999997 69999998753210 112 2344555555554433 3334568999999999
Q ss_pred HHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHHh
Q psy5743 551 AIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHLI 627 (644)
Q Consensus 551 aLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eLl 627 (644)
+||||++++|+++||||||++||+.+...+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|++++.|+++++.
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (233)
T cd03258 150 GIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVF 229 (233)
T ss_pred HHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999988753 789999999999985 59999999999999999999987
Q ss_pred cC
Q psy5743 628 KN 629 (644)
Q Consensus 628 ~~ 629 (644)
+.
T Consensus 230 ~~ 231 (233)
T cd03258 230 AN 231 (233)
T ss_pred cC
Confidence 53
No 110
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.2e-46 Score=378.31 Aligned_cols=227 Identities=32% Similarity=0.485 Sum_probs=192.8
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCC-----CCcEEEECCccCCCCChHH
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDP-----QNGKILIDGVDIKELDPMY 473 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p-----~~G~I~idg~~i~~~~~~~ 473 (644)
.|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+...
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 79 (250)
T PRK14247 3 KIEIRDLKVSFGQ---VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIE 79 (250)
T ss_pred eEEEEeeEEEECC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHH
Confidence 4899999999963 4699999999999999999999999999999999999984 6999999999999888888
Q ss_pred HhcceEEEecCCCCC-cccHHHHHhcCCCCCC-----CCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHH
Q psy5743 474 LRSQIGSVSQEPTLF-SGTIYENILYGVNDSS-----SVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQK 547 (644)
Q Consensus 474 lr~~i~~V~Q~~~Lf-~gTIreNI~~g~~~~~-----~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQk 547 (644)
+|+.++||+|++.+| +.|++||+.++..... ...++++.++++..++.+.+.. .+ .....+||||||
T Consensus 80 ~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~---~~----~~~~~~LSgG~~ 152 (250)
T PRK14247 80 LRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKD---RL----DAPAGKLSGGQQ 152 (250)
T ss_pred HhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhh---hh----cCCcccCCHHHH
Confidence 999999999999755 6799999987632100 0113456777777777554321 22 334568999999
Q ss_pred HHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhHH
Q psy5743 548 QRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHL 626 (644)
Q Consensus 548 QRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~eL 626 (644)
||++||||++++|++++|||||++||+.+...+.+.|.++.+++|+|+|||+++.+ ..||+|++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14247 153 QRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREV 232 (250)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHH
Confidence 99999999999999999999999999999999999999987789999999999987 46999999999999999999999
Q ss_pred hcCCCcHHH
Q psy5743 627 IKNPNSMFN 635 (644)
Q Consensus 627 l~~~~~~y~ 635 (644)
.+.+...+.
T Consensus 233 ~~~~~~~~~ 241 (250)
T PRK14247 233 FTNPRHELT 241 (250)
T ss_pred HcCCccHHH
Confidence 865433343
No 111
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5e-46 Score=384.28 Aligned_cols=222 Identities=28% Similarity=0.526 Sum_probs=186.8
Q ss_pred EEEEEEEEEcCCCC--CCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCC----ChHH
Q psy5743 400 IDFNNIRFSYPSRP--DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKEL----DPMY 473 (644)
Q Consensus 400 I~~~~vsf~Y~~~~--~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~----~~~~ 473 (644)
|+++||+|+|++.. .+++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||+++... +...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999997422 24699999999999999999999999999999999999999999999999999764 3467
Q ss_pred HhcceEEEecCC--CCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccc-cccCCCCCCChhHHHHH
Q psy5743 474 LRSQIGSVSQEP--TLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDT-IVGERGIMLSGGQKQRI 550 (644)
Q Consensus 474 lr~~i~~V~Q~~--~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T-~ige~G~~LSGGQkQRi 550 (644)
+|+.||||+|+| .+|+.|++|||.++... ...+.++..+.++ +.++. .|+++ .......+||||||||+
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~-~~~~~~~~~~~~~-----~~l~~--~gL~~~~~~~~~~~LSgGq~qrv 154 (286)
T PRK13646 83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKN-FKMNLDEVKNYAH-----RLLMD--LGFSRDVMSQSPFQMSGGQMRKI 154 (286)
T ss_pred HHhheEEEecChHhccchhhHHHHHHhhHHH-cCCCHHHHHHHHH-----HHHHH--cCCChhhhhCCcccCCHHHHHHH
Confidence 899999999997 68999999999987321 1134444332211 12222 25654 34567889999999999
Q ss_pred HHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc--CCceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhHHh
Q psy5743 551 AIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI--EGKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHLI 627 (644)
Q Consensus 551 aLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~--~~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~eLl 627 (644)
+|||||+.+|+++||||||++||+.+...+.+.|+++. .++|+|+|||+++.+ ..||+|++|++|++++.|+++++.
T Consensus 155 ~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 234 (286)
T PRK13646 155 AIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELF 234 (286)
T ss_pred HHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999999999999999999874 379999999999987 569999999999999999999987
Q ss_pred cC
Q psy5743 628 KN 629 (644)
Q Consensus 628 ~~ 629 (644)
+.
T Consensus 235 ~~ 236 (286)
T PRK13646 235 KD 236 (286)
T ss_pred hC
Confidence 64
No 112
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.7e-46 Score=378.64 Aligned_cols=226 Identities=30% Similarity=0.459 Sum_probs=190.2
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCC--C---CCcEEEECCccCCC--CCh
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD--P---QNGKILIDGVDIKE--LDP 471 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~--p---~~G~I~idg~~i~~--~~~ 471 (644)
-|+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++ | ++|+|.+||.++.. .+.
T Consensus 12 ~l~i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~ 88 (259)
T PRK14274 12 VYQINGMNLWYGQ---HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDL 88 (259)
T ss_pred eEEEeeEEEEECC---eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCH
Confidence 4899999999963 469999999999999999999999999999999999997 3 59999999999864 455
Q ss_pred HHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCH----HHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHH
Q psy5743 472 MYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTK----SDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQK 547 (644)
Q Consensus 472 ~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~----~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQk 547 (644)
..+|+.++|++|++.+|.+|++||+.++.......++ +++.++++..++.+++. .........||||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~l~~~~~~LS~Gq~ 161 (259)
T PRK14274 89 VELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVK-------DRLHTQALSLSGGQQ 161 (259)
T ss_pred HHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------hhhhCCcccCCHHHH
Confidence 6788899999999999999999999886321110122 23445566666554432 234556778999999
Q ss_pred HHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHH
Q psy5743 548 QRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHL 626 (644)
Q Consensus 548 QRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eL 626 (644)
||++||||++++|+++||||||++||.++...+.+.|.++.+++|+|+|||+++.+. .||+|++|++|++++.|+++++
T Consensus 162 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 241 (259)
T PRK14274 162 QRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKM 241 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999999999999877899999999999975 5999999999999999999998
Q ss_pred hcCCCcHH
Q psy5743 627 IKNPNSMF 634 (644)
Q Consensus 627 l~~~~~~y 634 (644)
.+++...|
T Consensus 242 ~~~~~~~~ 249 (259)
T PRK14274 242 FSNPDDQR 249 (259)
T ss_pred hhCCCCHH
Confidence 76533333
No 113
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=3.2e-46 Score=394.37 Aligned_cols=219 Identities=32% Similarity=0.489 Sum_probs=188.2
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++||+++...++ .++.++
T Consensus 3 L~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i~ 77 (353)
T PRK10851 3 IEIANIKKSFGR---TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKVG 77 (353)
T ss_pred EEEEEEEEEeCC---eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCEE
Confidence 789999999963 469999999999999999999999999999999999999999999999999987654 467899
Q ss_pred EEecCCCCCc-ccHHHHHhcCCCCC---CCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHH
Q psy5743 480 SVSQEPTLFS-GTIYENILYGVNDS---SSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIA 551 (644)
Q Consensus 480 ~V~Q~~~Lf~-gTIreNI~~g~~~~---~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRia 551 (644)
||+|++.+|. .|++|||.|+.... ...+ ++++.++++..++.++..+ ....||||||||++
T Consensus 78 ~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~-----------~~~~LSgGq~QRva 146 (353)
T PRK10851 78 FVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADR-----------YPAQLSGGQKQRVA 146 (353)
T ss_pred EEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhC-----------ChhhCCHHHHHHHH
Confidence 9999999997 59999999874310 0122 3456666777776554433 33689999999999
Q ss_pred HHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhHHhc
Q psy5743 552 IARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHLIK 628 (644)
Q Consensus 552 LARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~eLl~ 628 (644)
|||||+++|++|+||||||+||+.+...+.+.|+++.+ ++|+|+|||+++.+ ..||+|++|++|++++.|+++++..
T Consensus 147 lArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~ 226 (353)
T PRK10851 147 LARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWR 226 (353)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999988764 68999999999986 5599999999999999999999987
Q ss_pred CCCcHH
Q psy5743 629 NPNSMF 634 (644)
Q Consensus 629 ~~~~~y 634 (644)
++...|
T Consensus 227 ~p~~~~ 232 (353)
T PRK10851 227 EPATRF 232 (353)
T ss_pred CccchH
Confidence 654434
No 114
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=2e-46 Score=369.10 Aligned_cols=201 Identities=36% Similarity=0.564 Sum_probs=175.6
Q ss_pred EEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEE
Q psy5743 401 DFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGS 480 (644)
Q Consensus 401 ~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~ 480 (644)
+++|++++|++. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+++.++|
T Consensus 1 ~~~~l~~~~~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~ 75 (205)
T cd03226 1 RIENISFSYKKG--TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGY 75 (205)
T ss_pred CcccEEEEeCCc--CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEE
Confidence 468999999641 569999999999999999999999999999999999999999999999998864 457788999
Q ss_pred EecCC--CCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHcc
Q psy5743 481 VSQEP--TLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIK 558 (644)
Q Consensus 481 V~Q~~--~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~ 558 (644)
++|++ .+|+.|++||+.++.+.. ...++++.++++..++.++..+.| ..||||||||++||||+++
T Consensus 76 ~~q~~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~laral~~ 143 (205)
T cd03226 76 VMQDVDYQLFTDSVREELLLGLKEL-DAGNEQAETVLKDLDLYALKERHP-----------LSLSGGQKQRLAIAAALLS 143 (205)
T ss_pred EecChhhhhhhccHHHHHhhhhhhc-CccHHHHHHHHHHcCCchhcCCCc-----------hhCCHHHHHHHHHHHHHHh
Confidence 99998 478899999999875421 123467788888888776654444 4799999999999999999
Q ss_pred CCCEEEeecccCCCCHHHHHHHHHHHHHH-cCCceEEEEccCchHHh-hcCEEEEEeCCeEE
Q psy5743 559 KSKILLLDEATSALDAENEYLVQSAIEKL-IEGKTVLTIAHRLSTIR-KSNQICVLDKGKIV 618 (644)
Q Consensus 559 ~p~IliLDEaTSaLD~~~e~~i~~~l~~~-~~~~TvI~IaHrl~~i~-~aD~Iivl~~G~iv 618 (644)
+|+++||||||++||+++.+.+.+.|++. .+++|+|++||+++.+. .||+|++|++|+++
T Consensus 144 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 144 GKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 99999999999999999999999999887 35789999999999986 59999999999975
No 115
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-46 Score=357.40 Aligned_cols=226 Identities=34% Similarity=0.510 Sum_probs=195.9
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCC---hHHHh
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELD---PMYLR 475 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~---~~~lr 475 (644)
.|+++||+-.||+ +..+|+||||+|++||.|||+|+||||||||++.|.|+.+|++|+|+++|.++..+. ...||
T Consensus 3 ~i~~~nl~k~yp~--~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r 80 (258)
T COG3638 3 MIEVKNLSKTYPG--GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLR 80 (258)
T ss_pred eEEEeeeeeecCC--CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHH
Confidence 4899999999985 568999999999999999999999999999999999999999999999999999888 66778
Q ss_pred cceEEEecCCCCCc-ccHHHHHhcCCCCCC-----------CCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCC
Q psy5743 476 SQIGSVSQEPTLFS-GTIYENILYGVNDSS-----------SVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLS 543 (644)
Q Consensus 476 ~~i~~V~Q~~~Lf~-gTIreNI~~g~~~~~-----------~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LS 543 (644)
++||+++|++-|-. -|+.+|+..|+-... +.+.....+|++.+|+.+.. -.+..+||
T Consensus 81 ~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A-----------~qra~~LS 149 (258)
T COG3638 81 RDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKA-----------YQRASTLS 149 (258)
T ss_pred HhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHH-----------HHHhccCC
Confidence 89999999999887 589999998874421 22444556677777765542 35678999
Q ss_pred hhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc--CCceEEEEccCchHH-hhcCEEEEEeCCeEEEe
Q psy5743 544 GGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI--EGKTVLTIAHRLSTI-RKSNQICVLDKGKIVEI 620 (644)
Q Consensus 544 GGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~--~~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~ 620 (644)
|||+||++|||||.++|+|++=|||+|+||+.+.+.|++.|++.. .+.|+|+.-|.+++. +.||||+-|++|+|+..
T Consensus 150 GGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfD 229 (258)
T COG3638 150 GGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFD 229 (258)
T ss_pred cchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEe
Confidence 999999999999999999999999999999999999999998864 478999999999997 56999999999999999
Q ss_pred cChhHHhcCCCcHHHHHHHh
Q psy5743 621 GSYAHLIKNPNSMFNKLMKY 640 (644)
Q Consensus 621 Gt~~eLl~~~~~~y~~l~~~ 640 (644)
|+.+||- +....+.+.+
T Consensus 230 g~~~el~---~~~~~~iYg~ 246 (258)
T COG3638 230 GPASELT---DEALDEIYGN 246 (258)
T ss_pred CChhhhh---HHHHHHHhcc
Confidence 9999963 2455555543
No 116
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.7e-46 Score=385.82 Aligned_cols=219 Identities=30% Similarity=0.440 Sum_probs=184.9
Q ss_pred EEEEEEEEEcCCCC--CCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCC----CChHH
Q psy5743 400 IDFNNIRFSYPSRP--DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKE----LDPMY 473 (644)
Q Consensus 400 I~~~~vsf~Y~~~~--~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~----~~~~~ 473 (644)
|+++|++|+|++.. ..++|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.+||+++.. .+...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999997421 1469999999999999999999999999999999999999999999999999864 34567
Q ss_pred HhcceEEEecCC--CCCcccHHHHHhcCCCCCCCCCHH----HHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHH
Q psy5743 474 LRSQIGSVSQEP--TLFSGTIYENILYGVNDSSSVTKS----DIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQK 547 (644)
Q Consensus 474 lr~~i~~V~Q~~--~Lf~gTIreNI~~g~~~~~~~~~~----~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQk 547 (644)
+|+.++||+|+| .+|+.|++|||.++... ...+.+ ++.++++..++.+. ........||||||
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~-~~~~~~~~~~~~~~~l~~~gL~~~----------~~~~~~~~LSgGq~ 151 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMN-FGVSEEDAKQKAREMIELVGLPEE----------LLARSPFELSGGQM 151 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHCCCChh----------hhhCCcccCCHHHH
Confidence 888999999998 68999999999987432 112333 33444555554321 12344568999999
Q ss_pred HHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHH-hhcCEEEEEeCCeEEEecChh
Q psy5743 548 QRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYA 624 (644)
Q Consensus 548 QRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~ 624 (644)
||++|||||+.+|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+ +.||+|++|++|++++.|+.+
T Consensus 152 qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~ 231 (290)
T PRK13634 152 RRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPR 231 (290)
T ss_pred HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999999988753 78999999999987 569999999999999999999
Q ss_pred HHhcC
Q psy5743 625 HLIKN 629 (644)
Q Consensus 625 eLl~~ 629 (644)
++.+.
T Consensus 232 ~~~~~ 236 (290)
T PRK13634 232 EIFAD 236 (290)
T ss_pred HHhcC
Confidence 98753
No 117
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-46 Score=372.69 Aligned_cols=205 Identities=35% Similarity=0.575 Sum_probs=174.2
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. +++.++
T Consensus 1 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~--~~~~i~ 75 (213)
T cd03259 1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPP--ERRNIG 75 (213)
T ss_pred CeeeeeEEEeCC---eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCch--hhccEE
Confidence 478999999963 469999999999999999999999999999999999999999999999999986543 577899
Q ss_pred EEecCCCCCc-ccHHHHHhcCCCCCCCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHH
Q psy5743 480 SVSQEPTLFS-GTIYENILYGVNDSSSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIAR 554 (644)
Q Consensus 480 ~V~Q~~~Lf~-gTIreNI~~g~~~~~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLAR 554 (644)
||+|++.+|. .|++||+.++.... ..+ ++++.++++..++.++ ......+||||||||++|||
T Consensus 76 ~v~q~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrl~la~ 143 (213)
T cd03259 76 MVFQDYALFPHLTVAENIAFGLKLR-GVPKAEIRARVRELLELVGLEGL-----------LNRYPHELSGGQQQRVALAR 143 (213)
T ss_pred EEcCchhhccCCcHHHHHHhHHHHc-CCCHHHHHHHHHHHHHHcCChhh-----------hhcChhhCCHHHHHHHHHHH
Confidence 9999999886 69999998763211 012 2344555555555433 33334689999999999999
Q ss_pred HHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHH-hhcCEEEEEeCCeEEEec
Q psy5743 555 ALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIG 621 (644)
Q Consensus 555 All~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~G 621 (644)
||+++|+++||||||++||+++.+.+.+.|.++.+ ++|+|++||+++.+ ..||+|++|++|++++.|
T Consensus 144 al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 144 ALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999999988753 78999999999987 459999999999998876
No 118
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.9e-46 Score=381.73 Aligned_cols=218 Identities=31% Similarity=0.562 Sum_probs=188.1
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
-|+++|++++|++ .++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+...+|+.+
T Consensus 7 ~l~~~nl~~~~~~-~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i 85 (271)
T PRK13632 7 MIKVENVSFSYPN-SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKI 85 (271)
T ss_pred EEEEEeEEEEcCC-CCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcce
Confidence 4899999999974 245799999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEEecCC--CCCcccHHHHHhcCCCCCCCCCHHH----HHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHH
Q psy5743 479 GSVSQEP--TLFSGTIYENILYGVNDSSSVTKSD----IIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAI 552 (644)
Q Consensus 479 ~~V~Q~~--~Lf~gTIreNI~~g~~~~~~~~~~~----i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaL 552 (644)
+||+|++ .+++.|++|||.++... ...+.++ +.++++..++.++ ......+||||||||++|
T Consensus 86 ~~v~q~~~~~~~~~tv~enl~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrl~l 153 (271)
T PRK13632 86 GIIFQNPDNQFIGATVEDDIAFGLEN-KKVPPKKMKDIIDDLAKKVGMEDY-----------LDKEPQNLSGGQKQRVAI 153 (271)
T ss_pred EEEEeCHHHhcCcccHHHHHHhHHHH-cCCCHHHHHHHHHHHHHHcCCHHH-----------hhCCcccCCHHHHHHHHH
Confidence 9999998 46678999999986321 1123333 4445555555433 334457999999999999
Q ss_pred HHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHhhcCEEEEEeCCeEEEecChhHHhcC
Q psy5743 553 ARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKN 629 (644)
Q Consensus 553 ARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eLl~~ 629 (644)
||||+++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+..||+|++|++|++++.|+.+++.+.
T Consensus 154 aral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 232 (271)
T PRK13632 154 ASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNN 232 (271)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcC
Confidence 9999999999999999999999999999999998753 4899999999999989999999999999999999988754
No 119
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=3.9e-46 Score=375.18 Aligned_cols=218 Identities=28% Similarity=0.516 Sum_probs=183.6
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+... ++.++
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~-~~~i~ 77 (236)
T TIGR03864 2 LEVAGLSFAYGA---RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAA-LARLG 77 (236)
T ss_pred EEEEeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhh-hhhEE
Confidence 689999999963 46999999999999999999999999999999999999999999999999998776544 45899
Q ss_pred EEecCCCC-CcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHcc
Q psy5743 480 SVSQEPTL-FSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIK 558 (644)
Q Consensus 480 ~V~Q~~~L-f~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~ 558 (644)
|++|++.+ +..|++||+.++... ...+.++..+ .+.++++.+ |++.........||||||||++||||+++
T Consensus 78 ~~~q~~~~~~~~t~~~~l~~~~~~-~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrl~laral~~ 149 (236)
T TIGR03864 78 VVFQQPTLDLDLSVRQNLRYHAAL-HGLSRAEARE-----RIAALLARL--GLAERADDKVRELNGGHRRRVEIARALLH 149 (236)
T ss_pred EeCCCCCCcccCcHHHHHHHHHHh-cCCCHHHHHH-----HHHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHhc
Confidence 99999987 568999999876321 1122222211 111222222 45555566677999999999999999999
Q ss_pred CCCEEEeecccCCCCHHHHHHHHHHHHHHc--CCceEEEEccCchHHhhcCEEEEEeCCeEEEecChhHHhcC
Q psy5743 559 KSKILLLDEATSALDAENEYLVQSAIEKLI--EGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKN 629 (644)
Q Consensus 559 ~p~IliLDEaTSaLD~~~e~~i~~~l~~~~--~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eLl~~ 629 (644)
+|+++||||||++||+.+.+.+.+.|.++. +++|+|++||+++.+..||+|++|++|++++.|+++++.+.
T Consensus 150 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 150 RPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred CCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 999999999999999999999999999875 37899999999999988999999999999999999998864
No 120
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=6.5e-46 Score=393.95 Aligned_cols=219 Identities=30% Similarity=0.527 Sum_probs=191.8
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++..+++. ++.+
T Consensus 14 ~L~l~~l~~~~~~---~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 88 (375)
T PRK09452 14 LVELRGISKSFDG---KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRHV 88 (375)
T ss_pred eEEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 4999999999963 4689999999999999999999999999999999999999999999999999877654 5789
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCCCCCCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHH
Q psy5743 479 GSVSQEPTLFSG-TIYENILYGVNDSSSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIA 553 (644)
Q Consensus 479 ~~V~Q~~~Lf~g-TIreNI~~g~~~~~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLA 553 (644)
+||+|++.+|.. |++|||.|+.... ..+ ++++.++++..++.++..+.| ..||||||||++||
T Consensus 89 g~vfQ~~~lfp~ltv~eNi~~~l~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~p-----------~~LSgGq~QRVaLA 156 (375)
T PRK09452 89 NTVFQSYALFPHMTVFENVAFGLRMQ-KTPAAEITPRVMEALRMVQLEEFAQRKP-----------HQLSGGQQQRVAIA 156 (375)
T ss_pred EEEecCcccCCCCCHHHHHHHHHhhc-CCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHHHH
Confidence 999999999965 9999999974311 122 345667778878777666655 58999999999999
Q ss_pred HHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhHHhcCC
Q psy5743 554 RALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHLIKNP 630 (644)
Q Consensus 554 RAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~eLl~~~ 630 (644)
|||+++|++|+||||||+||..+...+.+.|+++.+ +.|+|+|||+++.+ ..||+|++|++|+|++.|++++++..+
T Consensus 157 RaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p 236 (375)
T PRK09452 157 RAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEP 236 (375)
T ss_pred HHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 999999999999999999999999999999988764 78999999999985 569999999999999999999998765
Q ss_pred CcHH
Q psy5743 631 NSMF 634 (644)
Q Consensus 631 ~~~y 634 (644)
...|
T Consensus 237 ~~~~ 240 (375)
T PRK09452 237 KNLF 240 (375)
T ss_pred ccHH
Confidence 4444
No 121
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.6e-46 Score=377.62 Aligned_cols=227 Identities=31% Similarity=0.494 Sum_probs=189.6
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCC-----CCCcEEEECCccCCC--CCh
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD-----PQNGKILIDGVDIKE--LDP 471 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~-----p~~G~I~idg~~i~~--~~~ 471 (644)
.|+++|++|+|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.+||+++.. .+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~ 80 (251)
T PRK14251 4 IISAKDVHLSYGN---YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDL 80 (251)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchH
Confidence 4899999999963 469999999999999999999999999999999999997 479999999999864 345
Q ss_pred HHHhcceEEEecCCCCCcccHHHHHhcCCCCCCC----CCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHH
Q psy5743 472 MYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSS----VTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQK 547 (644)
Q Consensus 472 ~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~----~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQk 547 (644)
..+|+.++||+|++.+|+.|++||+.++.+.... ..++++.++++..++++.. + ........+||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~----~~~~~~~~~LS~Gq~ 153 (251)
T PRK14251 81 VELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKET---K----DNLDRNAQAFSGGQQ 153 (251)
T ss_pred HHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcch---H----HHhccChhhCCHHHH
Confidence 6678899999999999999999999976321100 1123455566666654321 1 123456679999999
Q ss_pred HHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhh-cCEEEEEeCCeEEEecChhHH
Q psy5743 548 QRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHL 626 (644)
Q Consensus 548 QRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~-aD~Iivl~~G~ive~Gt~~eL 626 (644)
||++||||++++|+++||||||++||+++...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 154 qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14251 154 QRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEM 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999998754 999999999999999999999
Q ss_pred hcCCCcHHH
Q psy5743 627 IKNPNSMFN 635 (644)
Q Consensus 627 l~~~~~~y~ 635 (644)
...+...|.
T Consensus 234 ~~~~~~~~~ 242 (251)
T PRK14251 234 FIAPKKQIT 242 (251)
T ss_pred HhCCCCHHH
Confidence 765433343
No 122
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=5.2e-46 Score=393.30 Aligned_cols=220 Identities=29% Similarity=0.469 Sum_probs=191.0
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCC--cEEEECCccCCCCChHHHh
Q psy5743 398 GEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQN--GKILIDGVDIKELDPMYLR 475 (644)
Q Consensus 398 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~--G~I~idg~~i~~~~~~~lr 475 (644)
+.|+++||+++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.+||.++...++ .+
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~~ 78 (362)
T TIGR03258 4 GGIRIDHLRVAYGA---NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--HK 78 (362)
T ss_pred eEEEEEEEEEEECC---eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--HH
Confidence 57999999999963 469999999999999999999999999999999999999999 999999999987665 46
Q ss_pred cceEEEecCCCCCcc-cHHHHHhcCCCCCCCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHH
Q psy5743 476 SQIGSVSQEPTLFSG-TIYENILYGVNDSSSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRI 550 (644)
Q Consensus 476 ~~i~~V~Q~~~Lf~g-TIreNI~~g~~~~~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRi 550 (644)
+.|+||+|++.+|.. |++|||.|+.... ..+ ++++.++++..++.++..+.| .+||||||||+
T Consensus 79 r~ig~vfQ~~~l~p~~tv~enl~~~l~~~-~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRv 146 (362)
T TIGR03258 79 RGLALLFQNYALFPHLKVEDNVAFGLRAQ-KMPKADIAERVADALKLVGLGDAAAHLP-----------AQLSGGMQQRI 146 (362)
T ss_pred CCEEEEECCcccCCCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhcCCCchhhCCh-----------hhCCHHHHHHH
Confidence 789999999999965 9999999874311 122 245666777777766655544 48999999999
Q ss_pred HHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC---CceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhHH
Q psy5743 551 AIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE---GKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHL 626 (644)
Q Consensus 551 aLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~---~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~eL 626 (644)
+|||||.++|++|+||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+ ..||+|++|++|++++.|+++|+
T Consensus 147 aLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~ 226 (362)
T TIGR03258 147 AIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQAL 226 (362)
T ss_pred HHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 999999999999999999999999999999999988754 68999999999986 56999999999999999999999
Q ss_pred hcCCCcHH
Q psy5743 627 IKNPNSMF 634 (644)
Q Consensus 627 l~~~~~~y 634 (644)
.+.+...|
T Consensus 227 ~~~p~~~~ 234 (362)
T TIGR03258 227 YDAPADGF 234 (362)
T ss_pred HhCcCcHH
Confidence 87654444
No 123
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=2.8e-46 Score=371.83 Aligned_cols=206 Identities=33% Similarity=0.449 Sum_probs=174.5
Q ss_pred EEEEEEEEEcCCCC-CCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHH----H
Q psy5743 400 IDFNNIRFSYPSRP-DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMY----L 474 (644)
Q Consensus 400 I~~~~vsf~Y~~~~-~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~----l 474 (644)
|+++||+++|++.. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++...++.. .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 57899999997421 157999999999999999999999999999999999999999999999999998877533 4
Q ss_pred hcceEEEecCCCCCcc-cHHHHHhcCCCCCCCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHH
Q psy5743 475 RSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQR 549 (644)
Q Consensus 475 r~~i~~V~Q~~~Lf~g-TIreNI~~g~~~~~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQR 549 (644)
+++++||+|++.+|.+ |++||+.++.... ..+ ++++.++++..++. ........+||||||||
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qr 148 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLA-GVPKKERRERAEELLERVGLG-----------DRLNHYPSELSGGQQQR 148 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhc-CCCHHHHHHHHHHHHHHcCCc-----------hhhhcChhhcCHHHHHH
Confidence 5789999999999986 9999999864321 111 23444555555443 33344556899999999
Q ss_pred HHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHhhcCEEEEEeCCeE
Q psy5743 550 IAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIRKSNQICVLDKGKI 617 (644)
Q Consensus 550 iaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~~aD~Iivl~~G~i 617 (644)
++||||++.+|++|||||||++||+++...+.+.|.++.+ ++|+|+|||+++.+..||+|++|++|++
T Consensus 149 v~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 149 VAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 9999999999999999999999999999999999998764 7899999999999999999999999974
No 124
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.3e-46 Score=372.90 Aligned_cols=213 Identities=29% Similarity=0.437 Sum_probs=179.9
Q ss_pred cEEEEEEEEEcCCCC-CCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHH---H
Q psy5743 399 EIDFNNIRFSYPSRP-DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMY---L 474 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~-~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~---l 474 (644)
-++++||+|+|+++. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++..++... +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 389999999997422 247999999999999999999999999999999999999999999999999999887654 3
Q ss_pred h-cceEEEecCCCCCcc-cHHHHHhcCCC--CC-CCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHH
Q psy5743 475 R-SQIGSVSQEPTLFSG-TIYENILYGVN--DS-SSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQR 549 (644)
Q Consensus 475 r-~~i~~V~Q~~~Lf~g-TIreNI~~g~~--~~-~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQR 549 (644)
| +.++|++|++.+|.+ |++||+.++.. .. ....++++.++++..++. ........+||||||||
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~LSgG~~qr 153 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLE-----------HRANHRPSELSGGERQR 153 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-----------hhhhCChhhCCHHHHHH
Confidence 3 679999999999975 99999987421 00 001123445555555443 33444557899999999
Q ss_pred HHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc--CCceEEEEccCchHHhhcCEEEEEeCCeEEEecC
Q psy5743 550 IAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI--EGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGS 622 (644)
Q Consensus 550 iaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~--~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt 622 (644)
++||||++.+|++|||||||++||+++...+.+.|.++. +++|+|+|||+++.+..+|++++|++|+|++.|.
T Consensus 154 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 154 VAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 999999999999999999999999999999999998874 4789999999999999999999999999998775
No 125
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-45 Score=378.46 Aligned_cols=222 Identities=29% Similarity=0.468 Sum_probs=191.6
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCC-----CCCcEEEECCccCCC--CC
Q psy5743 398 GEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD-----PQNGKILIDGVDIKE--LD 470 (644)
Q Consensus 398 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~-----p~~G~I~idg~~i~~--~~ 470 (644)
..|+++|++++|++ +++|+|+||++++||+++|+|+||||||||+++|+|+++ |++|+|.+||.++.. .+
T Consensus 19 ~~l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 95 (267)
T PRK14237 19 IALSTKDLHVYYGK---KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEIN 95 (267)
T ss_pred eEEEEeeEEEEECC---eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCC
Confidence 35999999999953 579999999999999999999999999999999999997 589999999999864 34
Q ss_pred hHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCC----CHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhH
Q psy5743 471 PMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSV----TKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQ 546 (644)
Q Consensus 471 ~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~----~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQ 546 (644)
...+|+.++||+|++.+|.+|++|||.++....... .++++.++++..++.+++. +........|||||
T Consensus 96 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~-------~~~~~~~~~LS~G~ 168 (267)
T PRK14237 96 VYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVK-------DDLHKSALTLSGGQ 168 (267)
T ss_pred hHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhh-------hhhcCCcccCCHHH
Confidence 567788999999999999999999999863211111 2344566677777655442 34567778999999
Q ss_pred HHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhH
Q psy5743 547 KQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAH 625 (644)
Q Consensus 547 kQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~e 625 (644)
|||++||||++++|+++||||||++||..+...+.+.|.++.++.|+|+|||+++.+ ..||+|++|++|++++.|+.++
T Consensus 169 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 248 (267)
T PRK14237 169 QQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRN 248 (267)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999999999999999999999999987789999999999987 5599999999999999999999
Q ss_pred HhcC
Q psy5743 626 LIKN 629 (644)
Q Consensus 626 Ll~~ 629 (644)
+.+.
T Consensus 249 ~~~~ 252 (267)
T PRK14237 249 IFTN 252 (267)
T ss_pred HhcC
Confidence 9764
No 126
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.9e-46 Score=377.38 Aligned_cols=224 Identities=33% Similarity=0.499 Sum_probs=188.8
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCC-----CCcEEEECCccCCCCC--h
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDP-----QNGKILIDGVDIKELD--P 471 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p-----~~G~I~idg~~i~~~~--~ 471 (644)
.|+++|++++|++ +++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.++|.++...+ .
T Consensus 12 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 88 (258)
T PRK14268 12 QIKVENLNLWYGE---KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDV 88 (258)
T ss_pred eEEEeeeEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchH
Confidence 5999999999963 4699999999999999999999999999999999999985 7999999999986533 4
Q ss_pred HHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCH----HHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHH
Q psy5743 472 MYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTK----SDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQK 547 (644)
Q Consensus 472 ~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~----~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQk 547 (644)
..+|+.++||+|++.+|+.|++||+.++.... ..+. +++.++++..++.+++ ..........||||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgG~~ 160 (258)
T PRK14268 89 VELRKNVGMVFQKPNPFPMSIYDNVAYGPRIH-GANKKDLDGVVENALRSAALWDET-------SDRLKSPALSLSGGQQ 160 (258)
T ss_pred HHHhhhEEEEecCCccCcccHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCCcch-------hhhhcCChhhCCHHHH
Confidence 56788999999999999999999999863210 1222 3455566666654332 1223445678999999
Q ss_pred HHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHH
Q psy5743 548 QRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHL 626 (644)
Q Consensus 548 QRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eL 626 (644)
||++|||||+.+|+++||||||++||.++...+.+.|+++.+++|+|+|||+++.+. .||+|++|++|++++.|+++++
T Consensus 161 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 240 (258)
T PRK14268 161 QRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQI 240 (258)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999998877899999999999985 5999999999999999999999
Q ss_pred hcCCCcH
Q psy5743 627 IKNPNSM 633 (644)
Q Consensus 627 l~~~~~~ 633 (644)
.+++...
T Consensus 241 ~~~~~~~ 247 (258)
T PRK14268 241 FHNPREK 247 (258)
T ss_pred hcCCCCH
Confidence 7653333
No 127
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=7.6e-46 Score=395.49 Aligned_cols=224 Identities=25% Similarity=0.464 Sum_probs=197.0
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
-|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++..++...+++++
T Consensus 3 ~L~~~nls~~y~~---~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~i 79 (402)
T PRK09536 3 MIDVSDLSVEFGD---TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRV 79 (402)
T ss_pred eEEEeeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcce
Confidence 3899999999963 5799999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCC-CcccHHHHHhcCCCCC-------CCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHH
Q psy5743 479 GSVSQEPTL-FSGTIYENILYGVNDS-------SSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRI 550 (644)
Q Consensus 479 ~~V~Q~~~L-f~gTIreNI~~g~~~~-------~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRi 550 (644)
|||+|++.+ |+.|++||+.++.... ...+++++.++++..++.++..+ ....||||||||+
T Consensus 80 g~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~-----------~~~~LSgGerQRv 148 (402)
T PRK09536 80 ASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADR-----------PVTSLSGGERQRV 148 (402)
T ss_pred EEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcC-----------ChhhCCHHHHHHH
Confidence 999999987 6889999999875211 11235567888888887665432 3458999999999
Q ss_pred HHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhHHhc
Q psy5743 551 AIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHLIK 628 (644)
Q Consensus 551 aLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~eLl~ 628 (644)
+|||||+++|++|||||||++||..+...+.+.|+++. +++|+|++||+++.+ +.||+|++|++|++++.|+++|++.
T Consensus 149 ~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~ 228 (402)
T PRK09536 149 LLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLT 228 (402)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhC
Confidence 99999999999999999999999999999999999875 478999999999999 5699999999999999999999885
Q ss_pred CCCcHHHHHH
Q psy5743 629 NPNSMFNKLM 638 (644)
Q Consensus 629 ~~~~~y~~l~ 638 (644)
. ....+++
T Consensus 229 ~--~~l~~~~ 236 (402)
T PRK09536 229 A--DTLRAAF 236 (402)
T ss_pred c--HHHHHHh
Confidence 3 3455554
No 128
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.4e-46 Score=378.31 Aligned_cols=225 Identities=31% Similarity=0.512 Sum_probs=189.5
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCC-----CCCcEEEECCccCCCCC--hH
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD-----PQNGKILIDGVDIKELD--PM 472 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~-----p~~G~I~idg~~i~~~~--~~ 472 (644)
-+++|++|+|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++...+ ..
T Consensus 6 ~~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 82 (251)
T PRK14244 6 ASVKNLNLWYGS---KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVV 82 (251)
T ss_pred EEeeeEEEEECC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchH
Confidence 478999999963 479999999999999999999999999999999999986 47999999999987653 34
Q ss_pred HHhcceEEEecCCCCCcccHHHHHhcCCCCCC-----CCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHH
Q psy5743 473 YLRSQIGSVSQEPTLFSGTIYENILYGVNDSS-----SVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQK 547 (644)
Q Consensus 473 ~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~-----~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQk 547 (644)
.+|+.++||+|++.+|.+|++||+.++..... ...++++.++++..++.+++ .+.+...+..||||||
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~ 155 (251)
T PRK14244 83 LLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEEL-------GDRLKDSAFELSGGQQ 155 (251)
T ss_pred HHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchh-------hhHhhcChhhCCHHHH
Confidence 57889999999999999999999987621100 01234455666766665432 2334566778999999
Q ss_pred HHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHH
Q psy5743 548 QRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHL 626 (644)
Q Consensus 548 QRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eL 626 (644)
||++||||++++|+++||||||++||+.+.+.+.+.|.++.+++|+|+|||+++.+. .||+|++|++|++++.|+++++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 235 (251)
T PRK14244 156 QRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEI 235 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999998877899999999999986 5999999999999999999999
Q ss_pred hcCCCcHH
Q psy5743 627 IKNPNSMF 634 (644)
Q Consensus 627 l~~~~~~y 634 (644)
.+.+...|
T Consensus 236 ~~~~~~~~ 243 (251)
T PRK14244 236 FKNPQSSK 243 (251)
T ss_pred hcCCCChH
Confidence 87644433
No 129
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.9e-46 Score=375.83 Aligned_cols=222 Identities=32% Similarity=0.496 Sum_probs=189.4
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhcc---CCC--CCcEEEECCccCCCC--Ch
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRL---YDP--QNGKILIDGVDIKEL--DP 471 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~---~~p--~~G~I~idg~~i~~~--~~ 471 (644)
.|+++|+++.|++ +++|+|+||++++||+++|+|+||||||||+++|+|+ ++| ++|+|.+||+++... +.
T Consensus 3 ~l~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14245 3 KIDARDVNFWYGD---FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQV 79 (250)
T ss_pred EEEEEEEEEEECC---EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccH
Confidence 4899999999963 4699999999999999999999999999999999997 454 589999999998764 34
Q ss_pred HHHhcceEEEecCCCCCcccHHHHHhcCCCCCCC----CCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHH
Q psy5743 472 MYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSS----VTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQK 547 (644)
Q Consensus 472 ~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~----~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQk 547 (644)
..+|+.++||+|++.+|..|++||+.++...... ..++++.++++..++.+++. +.....+..||||||
T Consensus 80 ~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~ 152 (250)
T PRK14245 80 DELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVK-------DKLKESAFALSGGQQ 152 (250)
T ss_pred HHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchh-------hhhhCCcccCCHHHH
Confidence 6788899999999999999999999876321100 12334566666666654443 334566789999999
Q ss_pred HHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhHH
Q psy5743 548 QRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHL 626 (644)
Q Consensus 548 QRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~eL 626 (644)
||++||||++++|+++||||||++||+.+...+.+.|+++.+++|+|+|||+++.+ ..||+|++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~ 232 (250)
T PRK14245 153 QRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKI 232 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999999999999999987789999999999988 55999999999999999999999
Q ss_pred hcCC
Q psy5743 627 IKNP 630 (644)
Q Consensus 627 l~~~ 630 (644)
.+++
T Consensus 233 ~~~~ 236 (250)
T PRK14245 233 FTNP 236 (250)
T ss_pred hcCC
Confidence 8653
No 130
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.7e-46 Score=395.03 Aligned_cols=219 Identities=28% Similarity=0.488 Sum_probs=187.2
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
.|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...++ .++.+
T Consensus 3 ~l~i~~l~~~~~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~--~~~~i 77 (369)
T PRK11000 3 SVTLRNVTKAYGD---VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPP--AERGV 77 (369)
T ss_pred EEEEEEEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--hHCCE
Confidence 3899999999963 468999999999999999999999999999999999999999999999999987665 35789
Q ss_pred EEEecCCCCCc-ccHHHHHhcCCCCCCCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHH
Q psy5743 479 GSVSQEPTLFS-GTIYENILYGVNDSSSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIA 553 (644)
Q Consensus 479 ~~V~Q~~~Lf~-gTIreNI~~g~~~~~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLA 553 (644)
+||+|++.+|. .|++|||.++.... ..+ ++++.++++..++.++..+ ....||||||||++||
T Consensus 78 ~~v~Q~~~l~~~~tv~eni~~~~~~~-~~~~~~~~~~~~~~l~~lgL~~~~~~-----------~~~~LSgGq~QRvaLA 145 (369)
T PRK11000 78 GMVFQSYALYPHLSVAENMSFGLKLA-GAKKEEINQRVNQVAEVLQLAHLLDR-----------KPKALSGGQRQRVAIG 145 (369)
T ss_pred EEEeCCcccCCCCCHHHHHHhHHhhc-CCCHHHHHHHHHHHHHHcCChhhhcC-----------ChhhCCHHHHHHHHHH
Confidence 99999999996 49999999874311 122 2446666676666544333 3358999999999999
Q ss_pred HHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhHHhcCC
Q psy5743 554 RALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHLIKNP 630 (644)
Q Consensus 554 RAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~eLl~~~ 630 (644)
|||+++|++||||||||+||+.+.+.+.+.|+++.+ +.|+|+|||+++.+ ..||+|++|++|++++.|+++++...+
T Consensus 146 raL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~p 225 (369)
T PRK11000 146 RTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYP 225 (369)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 999999999999999999999999999999988753 78999999999976 569999999999999999999998754
Q ss_pred CcHH
Q psy5743 631 NSMF 634 (644)
Q Consensus 631 ~~~y 634 (644)
...|
T Consensus 226 ~~~~ 229 (369)
T PRK11000 226 ANRF 229 (369)
T ss_pred ccHH
Confidence 4333
No 131
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=7.5e-46 Score=388.62 Aligned_cols=228 Identities=27% Similarity=0.436 Sum_probs=188.8
Q ss_pred cEEEEEEEEEcCCCC----------CCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCC
Q psy5743 399 EIDFNNIRFSYPSRP----------DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKE 468 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~----------~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~ 468 (644)
-|+++|++.+|+.+. ...+++|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++.+
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence 489999999996321 2468999999999999999999999999999999999999999999999999999
Q ss_pred CChHH---HhcceEEEecCC--CCC-cccHHHHHhcCCCCC-CCCCHHH----HHHHHHHHhhccchhhhhcCccccccC
Q psy5743 469 LDPMY---LRSQIGSVSQEP--TLF-SGTIYENILYGVNDS-SSVTKSD----IIHAAKEANAYGFVIDFKNGFDTIVGE 537 (644)
Q Consensus 469 ~~~~~---lr~~i~~V~Q~~--~Lf-~gTIreNI~~g~~~~-~~~~~~~----i~~a~~~a~l~~~i~~lp~Gl~T~ige 537 (644)
++..+ +|++++||+|+| .++ ..||.|||.++.... ...+.++ +.++++.+++.+ .....
T Consensus 88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~----------~~~~~ 157 (331)
T PRK15079 88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLP----------NLINR 157 (331)
T ss_pred CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCh----------HHhcC
Confidence 88654 578899999998 477 589999997531100 0133333 344455554421 12234
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHhh-cCEEEEEeC
Q psy5743 538 RGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIRK-SNQICVLDK 614 (644)
Q Consensus 538 ~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~~-aD~Iivl~~ 614 (644)
....||||||||++|||||+.+|++||+|||||+||..+...+.+.|.++.+ +.|+|+|||+++.+.. ||+|++|++
T Consensus 158 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~ 237 (331)
T PRK15079 158 YPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYL 237 (331)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 4568999999999999999999999999999999999999999999988754 7899999999999975 999999999
Q ss_pred CeEEEecChhHHhcCCCcHHHH
Q psy5743 615 GKIVEIGSYAHLIKNPNSMFNK 636 (644)
Q Consensus 615 G~ive~Gt~~eLl~~~~~~y~~ 636 (644)
|+|+|.|+.+++++++...|.+
T Consensus 238 G~ive~g~~~~i~~~~~~py~~ 259 (331)
T PRK15079 238 GHAVELGTYDEVYHNPLHPYTK 259 (331)
T ss_pred CEEEEEcCHHHHHcCCCCHHHH
Confidence 9999999999998765556655
No 132
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-45 Score=375.25 Aligned_cols=226 Identities=33% Similarity=0.518 Sum_probs=190.2
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCC-----CCcEEEECCccCCC--CC
Q psy5743 398 GEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDP-----QNGKILIDGVDIKE--LD 470 (644)
Q Consensus 398 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p-----~~G~I~idg~~i~~--~~ 470 (644)
+.|+++||+++|++ +++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.+||+++.. .+
T Consensus 2 ~~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~ 78 (250)
T PRK14240 2 GKISVKDLDLFYGD---FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78 (250)
T ss_pred CeEEEEEEEEEECC---ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 35899999999963 4699999999999999999999999999999999999863 69999999999875 45
Q ss_pred hHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCC----CCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhH
Q psy5743 471 PMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSS----VTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQ 546 (644)
Q Consensus 471 ~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~----~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQ 546 (644)
...+|+.++||+|++.+|+.|++||+.++...... ..++++.++++.+++.+.+. .........|||||
T Consensus 79 ~~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~ 151 (250)
T PRK14240 79 VNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVK-------DRLKKSALGLSGGQ 151 (250)
T ss_pred hHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhH-------HHHhcCCCCCCHHH
Confidence 56788899999999999999999999986321100 12344555666666543332 23455677899999
Q ss_pred HHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhH
Q psy5743 547 KQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAH 625 (644)
Q Consensus 547 kQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~e 625 (644)
|||++||||++.+|+++||||||++||+.+...+.+.|+++.+++|+|+|||+++.+. .||+|++|++|++++.|++++
T Consensus 152 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 231 (250)
T PRK14240 152 QQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVD 231 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999999877899999999999875 599999999999999999999
Q ss_pred HhcCCCcH
Q psy5743 626 LIKNPNSM 633 (644)
Q Consensus 626 Ll~~~~~~ 633 (644)
+...+...
T Consensus 232 ~~~~~~~~ 239 (250)
T PRK14240 232 LFTNPKDK 239 (250)
T ss_pred HHhCCCCh
Confidence 87643333
No 133
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=9.1e-46 Score=379.35 Aligned_cols=227 Identities=24% Similarity=0.443 Sum_probs=187.9
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChH---HHh
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPM---YLR 475 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~---~lr 475 (644)
-|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++..++.. .+|
T Consensus 7 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 83 (269)
T PRK11831 7 LVDMRGVSFTRGN---RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVR 83 (269)
T ss_pred eEEEeCeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHh
Confidence 4899999999963 4699999999999999999999999999999999999999999999999999877654 357
Q ss_pred cceEEEecCCCCCcc-cHHHHHhcCCCCCCCCCH----HHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHH
Q psy5743 476 SQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTK----SDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRI 550 (644)
Q Consensus 476 ~~i~~V~Q~~~Lf~g-TIreNI~~g~~~~~~~~~----~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRi 550 (644)
+.++||+|++.+|.+ |++||+.++.......+. +++.++++..++.+ ........||||||||+
T Consensus 84 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LSgGq~qrv 152 (269)
T PRK11831 84 KRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRG-----------AAKLMPSELSGGMARRA 152 (269)
T ss_pred hcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChh-----------hhhCChhhCCHHHHHHH
Confidence 789999999999986 999999875211001122 23344444444432 22334468999999999
Q ss_pred HHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHhh-cCEEEEEeCCeEEEecChhHHh
Q psy5743 551 AIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLI 627 (644)
Q Consensus 551 aLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~~-aD~Iivl~~G~ive~Gt~~eLl 627 (644)
+||||++++|+++||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 153 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (269)
T PRK11831 153 ALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQ 232 (269)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999988753 6899999999998854 9999999999999999999998
Q ss_pred cCCCcHHHHHHH
Q psy5743 628 KNPNSMFNKLMK 639 (644)
Q Consensus 628 ~~~~~~y~~l~~ 639 (644)
+.+...+.+++.
T Consensus 233 ~~~~~~~~~~~~ 244 (269)
T PRK11831 233 ANPDPRVRQFLD 244 (269)
T ss_pred cCCcHHHHHHHH
Confidence 653344555553
No 134
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-45 Score=375.59 Aligned_cols=222 Identities=32% Similarity=0.489 Sum_probs=187.6
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccC--CC---CCcEEEECCccCCCC--Ch
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLY--DP---QNGKILIDGVDIKEL--DP 471 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~--~p---~~G~I~idg~~i~~~--~~ 471 (644)
-|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|++ +| ++|+|.++|+++... +.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14239 5 ILQVSDLSVYYNK---KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDT 81 (252)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccch
Confidence 4899999999963 46999999999999999999999999999999999995 36 499999999998643 44
Q ss_pred HHHhcceEEEecCCCCCcccHHHHHhcCCCCCC----CCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHH
Q psy5743 472 MYLRSQIGSVSQEPTLFSGTIYENILYGVNDSS----SVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQK 547 (644)
Q Consensus 472 ~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~----~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQk 547 (644)
..+|+.++||+|++.+|+.|++||+.++..... ...++++.++++..++.+++. +........||||||
T Consensus 82 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~ 154 (252)
T PRK14239 82 VDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVK-------DRLHDSALGLSGGQQ 154 (252)
T ss_pred HhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHH-------HHHhcCcccCCHHHH
Confidence 577889999999999999999999987532100 011234555566666544332 334566788999999
Q ss_pred HHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHH
Q psy5743 548 QRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHL 626 (644)
Q Consensus 548 QRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eL 626 (644)
||++||||++++|++|||||||++||.++...+.+.|+++.+++|+|+|||+++.+. .||+|++|++|++++.|+++++
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 234 (252)
T PRK14239 155 QRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQM 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999998877799999999999874 5999999999999999999999
Q ss_pred hcCC
Q psy5743 627 IKNP 630 (644)
Q Consensus 627 l~~~ 630 (644)
.+.+
T Consensus 235 ~~~~ 238 (252)
T PRK14239 235 FMNP 238 (252)
T ss_pred HhCC
Confidence 8653
No 135
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=8.5e-46 Score=376.42 Aligned_cols=217 Identities=30% Similarity=0.482 Sum_probs=183.8
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCC---------
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELD--------- 470 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~--------- 470 (644)
|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++
T Consensus 1 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 77 (252)
T TIGR03005 1 VRFSDVTKRFGI---LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPA 77 (252)
T ss_pred CEEEEEEEEeCC---eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccccccccc
Confidence 579999999963 46999999999999999999999999999999999999999999999999987653
Q ss_pred ----hHHHhcceEEEecCCCCCc-ccHHHHHhcCCCCCCCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCC
Q psy5743 471 ----PMYLRSQIGSVSQEPTLFS-GTIYENILYGVNDSSSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIM 541 (644)
Q Consensus 471 ----~~~lr~~i~~V~Q~~~Lf~-gTIreNI~~g~~~~~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~ 541 (644)
...+|+.++||+|++.+|. .|++||+.++.......+ ++++.++++..++ +.........
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~~~~~~~~ 146 (252)
T TIGR03005 78 DEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGL-----------ADKADHMPAQ 146 (252)
T ss_pred chhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC-----------hhHhhcChhh
Confidence 2467889999999999885 799999998521100112 2334444444444 3334455678
Q ss_pred CChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEEEeCCeEE
Q psy5743 542 LSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIR-KSNQICVLDKGKIV 618 (644)
Q Consensus 542 LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~-~aD~Iivl~~G~iv 618 (644)
||||||||++||||++++|+++||||||++||+.+...+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|+++
T Consensus 147 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~ 226 (252)
T TIGR03005 147 LSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIV 226 (252)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999988753 789999999999984 69999999999999
Q ss_pred EecChhHHhcCC
Q psy5743 619 EIGSYAHLIKNP 630 (644)
Q Consensus 619 e~Gt~~eLl~~~ 630 (644)
+.|+++++.+.+
T Consensus 227 ~~g~~~~~~~~~ 238 (252)
T TIGR03005 227 EQGKPDEIFRQP 238 (252)
T ss_pred EeCCHHHHhcCC
Confidence 999999998653
No 136
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-45 Score=378.74 Aligned_cols=222 Identities=33% Similarity=0.498 Sum_probs=191.2
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCC-----CCcEEEECCccCCC--CC
Q psy5743 398 GEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDP-----QNGKILIDGVDIKE--LD 470 (644)
Q Consensus 398 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p-----~~G~I~idg~~i~~--~~ 470 (644)
+.|+++|++|+|++ +++|+|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++.. .+
T Consensus 24 ~~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~ 100 (272)
T PRK14236 24 TALEVRNLNLFYGD---KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVD 100 (272)
T ss_pred cEEEEEEEEEEECC---eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccC
Confidence 35999999999963 4699999999999999999999999999999999999984 89999999999875 34
Q ss_pred hHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCC----CCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhH
Q psy5743 471 PMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSS----VTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQ 546 (644)
Q Consensus 471 ~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~----~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQ 546 (644)
...+|+.++|++|++.+|++|++||+.++...... ..++++.++++..++.+++. +..+..+..|||||
T Consensus 101 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq 173 (272)
T PRK14236 101 VAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVK-------DRLHENAFGLSGGQ 173 (272)
T ss_pred HHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHH-------HHhhCCcccCCHHH
Confidence 56788999999999999999999999876321100 11244666666666654433 34567788999999
Q ss_pred HHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhH
Q psy5743 547 KQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAH 625 (644)
Q Consensus 547 kQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~e 625 (644)
|||++||||++++|+++||||||++||+.+...+.+.|.++.+++|+|+|||+++.+. .||+|++|++|++++.|++++
T Consensus 174 ~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 253 (272)
T PRK14236 174 QQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDT 253 (272)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHHH
Confidence 9999999999999999999999999999999999999999877899999999999875 699999999999999999999
Q ss_pred HhcC
Q psy5743 626 LIKN 629 (644)
Q Consensus 626 Ll~~ 629 (644)
+.+.
T Consensus 254 ~~~~ 257 (272)
T PRK14236 254 LFTS 257 (272)
T ss_pred HhcC
Confidence 8764
No 137
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-45 Score=380.53 Aligned_cols=217 Identities=27% Similarity=0.496 Sum_probs=186.9
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCC--CCChHHHhc
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIK--ELDPMYLRS 476 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~--~~~~~~lr~ 476 (644)
-|+++|++|+|++ ++++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++. ..+...+|+
T Consensus 5 ~l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~ 82 (283)
T PRK13636 5 ILKVEELNYNYSD--GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRE 82 (283)
T ss_pred eEEEEeEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHh
Confidence 4899999999963 356999999999999999999999999999999999999999999999999984 345667899
Q ss_pred ceEEEecCC--CCCcccHHHHHhcCCCCCCCCCH----HHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHH
Q psy5743 477 QIGSVSQEP--TLFSGTIYENILYGVNDSSSVTK----SDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRI 550 (644)
Q Consensus 477 ~i~~V~Q~~--~Lf~gTIreNI~~g~~~~~~~~~----~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRi 550 (644)
.++||+|++ .+|+.|++||+.++.... ..+. +++.++++..++.+ .......+||||||||+
T Consensus 83 ~ig~v~q~~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~gL~~-----------~~~~~~~~LS~G~~qrl 150 (283)
T PRK13636 83 SVGMVFQDPDNQLFSASVYQDVSFGAVNL-KLPEDEVRKRVDNALKRTGIEH-----------LKDKPTHCLSFGQKKRV 150 (283)
T ss_pred hEEEEecCcchhhccccHHHHHHhHHHHc-CCCHHHHHHHHHHHHHHCCChh-----------hhhCCcccCCHHHHHHH
Confidence 999999998 678999999999863210 1222 33455555555543 23455779999999999
Q ss_pred HHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHHh
Q psy5743 551 AIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHLI 627 (644)
Q Consensus 551 aLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eLl 627 (644)
+|||||+.+|++|||||||++||+++...+.+.|.++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++.
T Consensus 151 ~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 230 (283)
T PRK13636 151 AIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVF 230 (283)
T ss_pred HHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999988764 789999999999986 69999999999999999999987
Q ss_pred cC
Q psy5743 628 KN 629 (644)
Q Consensus 628 ~~ 629 (644)
+.
T Consensus 231 ~~ 232 (283)
T PRK13636 231 AE 232 (283)
T ss_pred cC
Confidence 63
No 138
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=8.8e-46 Score=371.26 Aligned_cols=213 Identities=32% Similarity=0.498 Sum_probs=181.4
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHH-Hhcce
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMY-LRSQI 478 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~-lr~~i 478 (644)
|+++||+++|++ .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+... +++.+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (230)
T TIGR03410 1 LEVSNLNVYYGQ---SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGI 77 (230)
T ss_pred CEEEeEEEEeCC---eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCe
Confidence 578999999973 46999999999999999999999999999999999999999999999999998887655 46789
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCCCCCCCCHHH-HHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHH
Q psy5743 479 GSVSQEPTLFSG-TIYENILYGVNDSSSVTKSD-IIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARAL 556 (644)
Q Consensus 479 ~~V~Q~~~Lf~g-TIreNI~~g~~~~~~~~~~~-i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAl 556 (644)
+|++|++.+|.+ |++||+.++..... .++++ ..++++..+ +++.........||||||||++||||+
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~-~~~~~~~~~~l~~~~----------~l~~~~~~~~~~LS~G~~qrv~la~al 146 (230)
T TIGR03410 78 AYVPQGREIFPRLTVEENLLTGLAALP-RRSRKIPDEIYELFP----------VLKEMLGRRGGDLSGGQQQQLAIARAL 146 (230)
T ss_pred EEeccCCcccCCCcHHHHHHHHHHhcC-cchHHHHHHHHHHHH----------hHHHHhhCChhhCCHHHHHHHHHHHHH
Confidence 999999999986 99999998743211 11111 222222222 233334556678999999999999999
Q ss_pred ccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHhh-cCEEEEEeCCeEEEecChhHH
Q psy5743 557 IKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHL 626 (644)
Q Consensus 557 l~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~~-aD~Iivl~~G~ive~Gt~~eL 626 (644)
+++|+++||||||++||+.+.+.+.+.|.+..+ ++|+|+|||+++.+.. ||+|+++++|++++.|+++++
T Consensus 147 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 147 VTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred hcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 999999999999999999999999999988764 7899999999999875 999999999999999999997
No 139
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.4e-46 Score=367.26 Aligned_cols=205 Identities=31% Similarity=0.446 Sum_probs=177.2
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
|+++|++|+|++ .++++|+||++++| +++|+||||||||||+++|+|+++|++|+|.++|.++...+ ..+|+.++
T Consensus 1 i~~~~~~~~~~~---~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 75 (211)
T cd03264 1 LQLENLTKRYGK---KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIG 75 (211)
T ss_pred CEEEEEEEEECC---EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheE
Confidence 579999999963 36999999999999 99999999999999999999999999999999999998776 77899999
Q ss_pred EEecCCCCCcc-cHHHHHhcCCCCCCCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHH
Q psy5743 480 SVSQEPTLFSG-TIYENILYGVNDSSSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIAR 554 (644)
Q Consensus 480 ~V~Q~~~Lf~g-TIreNI~~g~~~~~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLAR 554 (644)
|++|++.+|.+ |++||+.+..... ..+ ++++.++++..++.++ +++. ...||||||||++|||
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~-------~~~~----~~~LS~G~~qrv~la~ 143 (211)
T cd03264 76 YLPQEFGVYPNFTVREFLDYIAWLK-GIPSKEVKARVDEVLELVNLGDR-------AKKK----IGSLSGGMRRRVGIAQ 143 (211)
T ss_pred EecCCCcccccCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHCCCHHH-------HhCc----hhhCCHHHHHHHHHHH
Confidence 99999999986 9999998742100 011 3445666666665433 2333 3579999999999999
Q ss_pred HHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh-hcCEEEEEeCCeEEEec
Q psy5743 555 ALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIG 621 (644)
Q Consensus 555 All~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~G 621 (644)
|++++|+++||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+. .||+|++|++|++++.|
T Consensus 144 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 144 ALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999999999877899999999999985 59999999999998865
No 140
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-45 Score=380.73 Aligned_cols=217 Identities=33% Similarity=0.558 Sum_probs=189.5
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCC---cEEEECCccCCCCChHHHh
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQN---GKILIDGVDIKELDPMYLR 475 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~---G~I~idg~~i~~~~~~~lr 475 (644)
-|+++|++|+|++. ..++++|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|.++...+...+|
T Consensus 5 ~l~i~~l~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~ 83 (282)
T PRK13640 5 IVEFKHVSFTYPDS-KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIR 83 (282)
T ss_pred eEEEEEEEEEcCCC-CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHH
Confidence 48999999999742 3469999999999999999999999999999999999999998 8999999999888877888
Q ss_pred cceEEEecCC--CCCcccHHHHHhcCCCCCCCCCHH----HHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHH
Q psy5743 476 SQIGSVSQEP--TLFSGTIYENILYGVNDSSSVTKS----DIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQR 549 (644)
Q Consensus 476 ~~i~~V~Q~~--~Lf~gTIreNI~~g~~~~~~~~~~----~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQR 549 (644)
++++||+|++ .+++.|++|||.++.+. ...+.+ ++.++++..++.++... ...+||||||||
T Consensus 84 ~~ig~v~q~~~~~~~~~tv~enl~~~~~~-~~~~~~~~~~~~~~~l~~~~L~~~~~~-----------~~~~LS~G~~qr 151 (282)
T PRK13640 84 EKVGIVFQNPDNQFVGATVGDDVAFGLEN-RAVPRPEMIKIVRDVLADVGMLDYIDS-----------EPANLSGGQKQR 151 (282)
T ss_pred hheEEEEECHHHhhccCCHHHHHHhhHHh-CCCCHHHHHHHHHHHHHHCCChhHhcC-----------CcccCCHHHHHH
Confidence 9999999998 46789999999986432 113333 35566666666544333 336999999999
Q ss_pred HHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHhhcCEEEEEeCCeEEEecChhHHh
Q psy5743 550 IAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLI 627 (644)
Q Consensus 550 iaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eLl 627 (644)
++|||||+.+|+++||||||++||..+...+.+.|.++.+ ++|+|++||+++.+..||+|++|++|++++.|+++++.
T Consensus 152 v~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (282)
T PRK13640 152 VAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIF 231 (282)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999999999999999999988753 78999999999999999999999999999999999886
Q ss_pred c
Q psy5743 628 K 628 (644)
Q Consensus 628 ~ 628 (644)
+
T Consensus 232 ~ 232 (282)
T PRK13640 232 S 232 (282)
T ss_pred c
Confidence 5
No 141
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=1.2e-45 Score=367.17 Aligned_cols=211 Identities=28% Similarity=0.426 Sum_probs=188.5
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCCh----HHHh
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDP----MYLR 475 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~----~~lr 475 (644)
+.+.|++|+|+++ .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++. ...|
T Consensus 1 ~~~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (218)
T cd03290 1 VQVTNGYFSWGSG--LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNR 78 (218)
T ss_pred CeeeeeEEecCCC--CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhc
Confidence 3578999999853 579999999999999999999999999999999999999999999999999877653 3456
Q ss_pred cceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHH
Q psy5743 476 SQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARA 555 (644)
Q Consensus 476 ~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARA 555 (644)
+.++|++|++.+|+.|++|||.++.+ .++++..++++..++.+++..+|.|++|.++....+||||||||++||||
T Consensus 79 ~~i~~~~q~~~~~~~t~~~nl~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~lara 154 (218)
T cd03290 79 YSVAYAAQKPWLLNATVEENITFGSP----FNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARA 154 (218)
T ss_pred ceEEEEcCCCccccccHHHHHhhcCc----CCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHH
Confidence 78999999999999999999998743 35667778888889888888899999999999999999999999999999
Q ss_pred HccCCCEEEeecccCCCCHHHHHHHHH--HHHHHc-CCceEEEEccCchHHhhcCEEEEEeCCe
Q psy5743 556 LIKKSKILLLDEATSALDAENEYLVQS--AIEKLI-EGKTVLTIAHRLSTIRKSNQICVLDKGK 616 (644)
Q Consensus 556 ll~~p~IliLDEaTSaLD~~~e~~i~~--~l~~~~-~~~TvI~IaHrl~~i~~aD~Iivl~~G~ 616 (644)
++++|+++||||||++||..+...+.+ .+..+. .++|+|++||+++.+..||+|++|++|.
T Consensus 155 l~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 155 LYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred HhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 999999999999999999999988887 344433 3689999999999999999999999884
No 142
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=8.8e-46 Score=365.46 Aligned_cols=205 Identities=29% Similarity=0.438 Sum_probs=179.3
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
|+++|++++|++ +++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|.++... ..+|+.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~ 75 (208)
T cd03268 1 LKTNDLTKTYGK---KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIG 75 (208)
T ss_pred CEEEEEEEEECC---eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEE
Confidence 578999999963 4799999999999999999999999999999999999999999999999998765 56788999
Q ss_pred EEecCCCCC-cccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHcc
Q psy5743 480 SVSQEPTLF-SGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIK 558 (644)
Q Consensus 480 ~V~Q~~~Lf-~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~ 558 (644)
||+|++.+| +.|++||+.++... ...+++++.++++..++.+... .....||||||||++||||+++
T Consensus 76 ~~~q~~~~~~~~tv~e~l~~~~~~-~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la~al~~ 143 (208)
T cd03268 76 ALIEAPGFYPNLTARENLRLLARL-LGIRKKRIDEVLDVVGLKDSAK-----------KKVKGFSLGMKQRLGIALALLG 143 (208)
T ss_pred EecCCCccCccCcHHHHHHHHHHh-cCCcHHHHHHHHHHcCCHHHHh-----------hhHhhCCHHHHHHHHHHHHHhc
Confidence 999999888 57999999886421 1135677778888887755433 3346799999999999999999
Q ss_pred CCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHh-hcCEEEEEeCCeEEEec
Q psy5743 559 KSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIG 621 (644)
Q Consensus 559 ~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~G 621 (644)
+|+++||||||++||+.+.+.+.+.|.+.. .++|+|+|||+++.+. .||+|++|++|++++.|
T Consensus 144 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 144 NPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999998865 4789999999999885 59999999999999865
No 143
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-45 Score=374.48 Aligned_cols=232 Identities=30% Similarity=0.450 Sum_probs=194.0
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCC-----CCcEEEECCccCCCC--Ch
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDP-----QNGKILIDGVDIKEL--DP 471 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p-----~~G~I~idg~~i~~~--~~ 471 (644)
-|+++|++|+|++ +++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|+++... +.
T Consensus 6 ~i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 82 (253)
T PRK14261 6 ILSTKNLNLWYGE---KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADV 82 (253)
T ss_pred eEEEeeeEEEECC---eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccch
Confidence 4899999999963 4699999999999999999999999999999999999763 489999999999876 45
Q ss_pred HHHhcceEEEecCCCCCcccHHHHHhcCCCCCCC----CCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHH
Q psy5743 472 MYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSS----VTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQK 547 (644)
Q Consensus 472 ~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~----~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQk 547 (644)
...|+.++|++|++.+|++|++||+.++...... ..++++.++++..++.+. +.+.....+..||||||
T Consensus 83 ~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------l~~~~~~~~~~LS~G~~ 155 (253)
T PRK14261 83 VALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDE-------VKDRLHDSALSLSGGQQ 155 (253)
T ss_pred hhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchh-------hHHHhhcChhhCCHHHH
Confidence 6778899999999999999999999986321000 112344555555554332 23446777889999999
Q ss_pred HHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHH
Q psy5743 548 QRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHL 626 (644)
Q Consensus 548 QRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eL 626 (644)
||++||||++.+|+++||||||++||.++.+.+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|+.+++
T Consensus 156 qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14261 156 QRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQI 235 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHH
Confidence 999999999999999999999999999999999999998877799999999999985 5999999999999999999999
Q ss_pred hcCCCcHHHHHHHh
Q psy5743 627 IKNPNSMFNKLMKY 640 (644)
Q Consensus 627 l~~~~~~y~~l~~~ 640 (644)
.+.+...+.+.+..
T Consensus 236 ~~~~~~~~~~~~~~ 249 (253)
T PRK14261 236 FENPHEELTENYIT 249 (253)
T ss_pred HhCCCcHHHHHHhc
Confidence 76544445555443
No 144
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-45 Score=380.85 Aligned_cols=219 Identities=29% Similarity=0.525 Sum_probs=188.9
Q ss_pred cEEEEEEEEEcCCCC---CCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCC-hHHH
Q psy5743 399 EIDFNNIRFSYPSRP---DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELD-PMYL 474 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~---~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~-~~~l 474 (644)
-|+++|++++|++.. .+++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++.+.+ ...+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 389999999997421 246999999999999999999999999999999999999999999999999997654 3567
Q ss_pred hcceEEEecCC--CCCcccHHHHHhcCCCCCCCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHH
Q psy5743 475 RSQIGSVSQEP--TLFSGTIYENILYGVNDSSSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQ 548 (644)
Q Consensus 475 r~~i~~V~Q~~--~Lf~gTIreNI~~g~~~~~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQ 548 (644)
|+.++||+|+| .+|..|+.||+.|+... ...+ ++++.++++..++.++..+. ...|||||||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~gL~~~~~~~-----------~~~LS~G~~q 151 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPEN-LGIPPEEIRERVDESLKKVGMYEYRRHA-----------PHLLSGGQKQ 151 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhh-cCCCHHHHHHHHHHHHHHCCCHhHhhCC-----------cccCCHHHHH
Confidence 88999999998 47777999999987321 0122 34566677777766554443 3689999999
Q ss_pred HHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHhhcCEEEEEeCCeEEEecChhHH
Q psy5743 549 RIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHL 626 (644)
Q Consensus 549 RiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eL 626 (644)
|++||||++++|+++|||||||+||+.+...+.+.|.++.+ ++|+|+|||+++.+..||+|++|++|++++.|+++++
T Consensus 152 rv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 231 (280)
T PRK13633 152 RVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEI 231 (280)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHH
Confidence 99999999999999999999999999999999999998753 7899999999999988999999999999999999998
Q ss_pred hcC
Q psy5743 627 IKN 629 (644)
Q Consensus 627 l~~ 629 (644)
.++
T Consensus 232 ~~~ 234 (280)
T PRK13633 232 FKE 234 (280)
T ss_pred hcC
Confidence 754
No 145
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=6.5e-46 Score=372.76 Aligned_cols=218 Identities=28% Similarity=0.459 Sum_probs=183.1
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHH-hcce
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYL-RSQI 478 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~l-r~~i 478 (644)
|+++||+++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ |+.+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 77 (232)
T cd03218 1 LRAENLSKRYGK---RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGI 77 (232)
T ss_pred CeEEEEEEEeCC---EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccE
Confidence 578999999963 469999999999999999999999999999999999999999999999999988876654 5679
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHc
Q psy5743 479 GSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALI 557 (644)
Q Consensus 479 ~~V~Q~~~Lf~g-TIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll 557 (644)
+|++|++.+|.+ |++||+.++.+.. ..+.++..+ .+.+.+..+ |++.........||||||||++||||++
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~ 149 (232)
T cd03218 78 GYLPQEASIFRKLTVEENILAVLEIR-GLSKKEREE-----KLEELLEEF--HITHLRKSKASSLSGGERRRVEIARALA 149 (232)
T ss_pred EEecCCccccccCcHHHHHHHHHHhc-CCCHHHHHH-----HHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHHh
Confidence 999999999987 9999999864321 122222111 112223322 4555556667899999999999999999
Q ss_pred cCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhHHhc
Q psy5743 558 KKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHLIK 628 (644)
Q Consensus 558 ~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~eLl~ 628 (644)
.+|++|||||||++||.++.+.+.+.|+++. +++|+|++||+++.+ +.||+|++|++|++++.|+++++..
T Consensus 150 ~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 150 TNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 9999999999999999999999999998875 478999999999765 5599999999999999999999864
No 146
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=2.7e-45 Score=372.46 Aligned_cols=226 Identities=31% Similarity=0.463 Sum_probs=185.8
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCC--------h
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELD--------P 471 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~--------~ 471 (644)
|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+ .
T Consensus 4 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (250)
T PRK11264 4 IEVKNLVKKFHG---QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLI 80 (250)
T ss_pred EEEeceEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHH
Confidence 899999999963 46999999999999999999999999999999999999999999999999987542 3
Q ss_pred HHHhcceEEEecCCCCCc-ccHHHHHhcCCCCCCCCCHH----HHHHHHHHHhhccchhhhhcCccccccCCCCCCChhH
Q psy5743 472 MYLRSQIGSVSQEPTLFS-GTIYENILYGVNDSSSVTKS----DIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQ 546 (644)
Q Consensus 472 ~~lr~~i~~V~Q~~~Lf~-gTIreNI~~g~~~~~~~~~~----~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQ 546 (644)
..+|+.++||+|++.+|. .|++||+.++.......+.+ ++.++++.. |++.........|||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~LS~Gq 149 (250)
T PRK11264 81 RQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKV-----------GLAGKETSYPRRLSGGQ 149 (250)
T ss_pred HHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc-----------CCcchhhCChhhCChHH
Confidence 567889999999999886 69999998742100012222 233333333 33333445678999999
Q ss_pred HHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC-CceEEEEccCchHHh-hcCEEEEEeCCeEEEecChh
Q psy5743 547 KQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE-GKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYA 624 (644)
Q Consensus 547 kQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~-~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~ 624 (644)
|||++||||++.+|++|||||||++||+.+.+.+.+.|.++.+ ++|+|+|||+++.+. .||+|++|++|++++.|+++
T Consensus 150 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 229 (250)
T PRK11264 150 QQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAK 229 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999999999988754 789999999999985 49999999999999999999
Q ss_pred HHhcCCC-cHHHHHHH
Q psy5743 625 HLIKNPN-SMFNKLMK 639 (644)
Q Consensus 625 eLl~~~~-~~y~~l~~ 639 (644)
++.+.+. ...+.++.
T Consensus 230 ~~~~~~~~~~~~~~~~ 245 (250)
T PRK11264 230 ALFADPQQPRTRQFLE 245 (250)
T ss_pred HHhcCCCCHHHHHHHH
Confidence 9876432 23344444
No 147
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=8.5e-46 Score=369.12 Aligned_cols=207 Identities=29% Similarity=0.467 Sum_probs=173.9
Q ss_pred EEEEEEEEEcCCCC-CCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHH---Hh
Q psy5743 400 IDFNNIRFSYPSRP-DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMY---LR 475 (644)
Q Consensus 400 I~~~~vsf~Y~~~~-~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~---lr 475 (644)
|+++||+++|++.. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++... +|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 68999999997421 246999999999999999999999999999999999999999999999999998887654 34
Q ss_pred -cceEEEecCCCCCc-ccHHHHHhcCCCCCCCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHH
Q psy5743 476 -SQIGSVSQEPTLFS-GTIYENILYGVNDSSSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQR 549 (644)
Q Consensus 476 -~~i~~V~Q~~~Lf~-gTIreNI~~g~~~~~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQR 549 (644)
+.++||+|++.+|. .|++||+.++... ...+ ++++.++++..++ +.........||||||||
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~~qr 149 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLI-GKKSVKEAKERAYEMLEKVGL-----------EHRINHRPSELSGGERQR 149 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHcCC-----------hhhhhCChhhCCHHHHHH
Confidence 67999999999996 6999999874210 0012 2234444444443 333344457899999999
Q ss_pred HHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHhhcCEEEEEeCCeEE
Q psy5743 550 IAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIRKSNQICVLDKGKIV 618 (644)
Q Consensus 550 iaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~~aD~Iivl~~G~iv 618 (644)
++||||++++|++||||||||+||.++...+.+.|.++.+ ++|+|+|||+++.+..+|+|++|++|+++
T Consensus 150 v~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 150 VAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 9999999999999999999999999999999999988753 78999999999999999999999999985
No 148
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-45 Score=379.57 Aligned_cols=216 Identities=29% Similarity=0.445 Sum_probs=187.6
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
++++|++++|++ ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 4 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (277)
T PRK13652 4 IETRDLCYSYSG--SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVG 81 (277)
T ss_pred EEEEEEEEEeCC--CCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheE
Confidence 789999999964 246999999999999999999999999999999999999999999999999998888888899999
Q ss_pred EEecCC--CCCcccHHHHHhcCCCCCCCCCH----HHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHH
Q psy5743 480 SVSQEP--TLFSGTIYENILYGVNDSSSVTK----SDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIA 553 (644)
Q Consensus 480 ~V~Q~~--~Lf~gTIreNI~~g~~~~~~~~~----~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLA 553 (644)
||+|++ .+|+.|++||+.++... ...+. +++.++++..++.++..+ ....||||||||++||
T Consensus 82 ~v~q~~~~~~~~~tv~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~Gq~qrl~la 149 (277)
T PRK13652 82 LVFQNPDDQIFSPTVEQDIAFGPIN-LGLDEETVAHRVSSALHMLGLEELRDR-----------VPHHLSGGEKKRVAIA 149 (277)
T ss_pred EEecCcccccccccHHHHHHhHHHH-cCCCHHHHHHHHHHHHHHCCChhHhcC-----------CcccCCHHHHHHHHHH
Confidence 999998 47889999999875321 01233 345566666666544333 3358999999999999
Q ss_pred HHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhHHhcC
Q psy5743 554 RALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHLIKN 629 (644)
Q Consensus 554 RAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~eLl~~ 629 (644)
|||+.+|++|||||||++||+.+.+.+.+.|.++.+ ++|+|++||+++.+ +.||+|++|++|++++.|+++++++.
T Consensus 150 raL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 228 (277)
T PRK13652 150 GVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQ 228 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcC
Confidence 999999999999999999999999999999988754 78999999999998 57999999999999999999999754
No 149
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-45 Score=375.97 Aligned_cols=221 Identities=30% Similarity=0.481 Sum_probs=187.5
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCC-----CCCcEEEECCccCCC--CCh
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD-----PQNGKILIDGVDIKE--LDP 471 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~-----p~~G~I~idg~~i~~--~~~ 471 (644)
-|+++|++++|++ .++|+|+||++++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.. .+.
T Consensus 21 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 97 (268)
T PRK14248 21 ILEVKDLSIYYGE---KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINV 97 (268)
T ss_pred eEEEEEEEEEeCC---ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccH
Confidence 4899999999963 469999999999999999999999999999999999875 799999999999865 344
Q ss_pred HHHhcceEEEecCCCCCcccHHHHHhcCCCCCC----CCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHH
Q psy5743 472 MYLRSQIGSVSQEPTLFSGTIYENILYGVNDSS----SVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQK 547 (644)
Q Consensus 472 ~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~----~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQk 547 (644)
..+|+.++|++|++.+|++|++||+.++..... ...++.+.++++..++.+.+. ........+||||||
T Consensus 98 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgGq~ 170 (268)
T PRK14248 98 VNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVK-------DRLHSSALSLSGGQQ 170 (268)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchH-------HHHhcCcccCCHHHH
Confidence 577889999999999999999999997632100 011234555666665543222 234566779999999
Q ss_pred HHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHH
Q psy5743 548 QRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHL 626 (644)
Q Consensus 548 QRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eL 626 (644)
||++||||++.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 171 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 250 (268)
T PRK14248 171 QRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQI 250 (268)
T ss_pred HHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999999877789999999999774 6999999999999999999998
Q ss_pred hcC
Q psy5743 627 IKN 629 (644)
Q Consensus 627 l~~ 629 (644)
..+
T Consensus 251 ~~~ 253 (268)
T PRK14248 251 FTS 253 (268)
T ss_pred HhC
Confidence 764
No 150
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=5.9e-46 Score=369.46 Aligned_cols=209 Identities=27% Similarity=0.449 Sum_probs=177.0
Q ss_pred EEEEEEEEEcCCCCC-CccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 400 IDFNNIRFSYPSRPD-AVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~-~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
|+++||+++|++... +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. ....+|+++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 689999999974211 269999999999999999999999999999999999999999999999999975 456788899
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCCCCCCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHH
Q psy5743 479 GSVSQEPTLFSG-TIYENILYGVNDSSSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIA 553 (644)
Q Consensus 479 ~~V~Q~~~Lf~g-TIreNI~~g~~~~~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLA 553 (644)
+|++|++.+|.+ |++||+.+..... ..+ ++++.++++..++ +.........||||||||++||
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~~qrv~la 148 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLY-GLKGDELTARLEELADRLGM-----------EELLDRRVGGFSTGMRQKVAIA 148 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCC-----------HHHHhhhhhhcCHHHHHHHHHH
Confidence 999999999985 9999998753210 112 2344445555544 3334456678999999999999
Q ss_pred HHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHh-hcCEEEEEeCCeEEEec
Q psy5743 554 RALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIG 621 (644)
Q Consensus 554 RAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~G 621 (644)
||++++|+++||||||++||+.+.+.+.+.|.++. +++|+|+|||+++.+. .||+|++|++|++++.|
T Consensus 149 ral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 149 RALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 99999999999999999999999999999998874 4789999999999875 59999999999998765
No 151
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3e-45 Score=375.71 Aligned_cols=221 Identities=28% Similarity=0.466 Sum_probs=187.1
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCC-----CCCcEEEECCccCCC--CCh
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD-----PQNGKILIDGVDIKE--LDP 471 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~-----p~~G~I~idg~~i~~--~~~ 471 (644)
-++++|++++|++ +++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||+++.. .+.
T Consensus 24 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 100 (271)
T PRK14238 24 VFDTQNLNLWYGE---DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV 100 (271)
T ss_pred EEEEeeeEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccH
Confidence 4999999999963 469999999999999999999999999999999999997 699999999999853 455
Q ss_pred HHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCH-----HHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhH
Q psy5743 472 MYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTK-----SDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQ 546 (644)
Q Consensus 472 ~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~-----~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQ 546 (644)
..+++.++|++|++.+|..|++||+.++.... ..++ +++.++++..++.+ ++.......+..|||||
T Consensus 101 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~-------~l~~~~~~~~~~LSgGe 172 (271)
T PRK14238 101 EELRTNVGMVFQKPNPFPKSIYDNVTYGPKIH-GIKDKKTLDEIVEKSLRGAAIWD-------ELKDRLHDNAYGLSGGQ 172 (271)
T ss_pred HHHhhhEEEEecCCccccccHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHHcCCcc-------hHHHHHhcCcccCCHHH
Confidence 67788999999999999999999999763210 1222 12233333333322 23334566778999999
Q ss_pred HHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhH
Q psy5743 547 KQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAH 625 (644)
Q Consensus 547 kQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~e 625 (644)
|||++|||||+++|++|||||||++||+.+.+.+.+.|.++.+++|+|+|||+++.+. .||+|++|++|++++.|++++
T Consensus 173 ~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~ 252 (271)
T PRK14238 173 QQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDK 252 (271)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 9999999999999999999999999999999999999999877899999999999975 599999999999999999999
Q ss_pred HhcCC
Q psy5743 626 LIKNP 630 (644)
Q Consensus 626 Ll~~~ 630 (644)
+..++
T Consensus 253 ~~~~~ 257 (271)
T PRK14238 253 IFSNP 257 (271)
T ss_pred HHcCC
Confidence 97653
No 152
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-45 Score=372.80 Aligned_cols=230 Identities=30% Similarity=0.488 Sum_probs=193.1
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCC-----CCcEEEECCccCCCC--Ch
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDP-----QNGKILIDGVDIKEL--DP 471 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p-----~~G~I~idg~~i~~~--~~ 471 (644)
-|+++|++++|++ +++|+|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.+||.++... +.
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~ 79 (250)
T PRK14262 3 IIEIENFSAYYGE---KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDV 79 (250)
T ss_pred eEEEEeeEEEeCC---ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhH
Confidence 3899999999963 4699999999999999999999999999999999999984 899999999998753 34
Q ss_pred HHHhcceEEEecCCCCCcccHHHHHhcCCCCCCC----CCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHH
Q psy5743 472 MYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSS----VTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQK 547 (644)
Q Consensus 472 ~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~----~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQk 547 (644)
..+|+.++|++|++.+|..|++||+.++...... ..++++.++++..++.+.+. ........+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~Gq~ 152 (250)
T PRK14262 80 TEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVK-------SELNKPGTRLSGGQQ 152 (250)
T ss_pred HHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhH-------HHHhCChhhcCHHHH
Confidence 5678899999999999999999999976321000 12334566677777654432 234567789999999
Q ss_pred HHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhHH
Q psy5743 548 QRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHL 626 (644)
Q Consensus 548 QRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~eL 626 (644)
||++||||++++|+++||||||++||..+...+.+.|.++.+++|+|+|||+++.+ ..||+|++|++|++++.|+++++
T Consensus 153 qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14262 153 QRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREI 232 (250)
T ss_pred HHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 99999999999999999999999999999999999999987789999999999976 56999999999999999999999
Q ss_pred hcCCCcHHHHHH
Q psy5743 627 IKNPNSMFNKLM 638 (644)
Q Consensus 627 l~~~~~~y~~l~ 638 (644)
.+.+...|.+.+
T Consensus 233 ~~~~~~~~~~~~ 244 (250)
T PRK14262 233 VERPKNKLTEEY 244 (250)
T ss_pred HhCCCChHHHHH
Confidence 865333354443
No 153
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=2e-45 Score=374.62 Aligned_cols=219 Identities=32% Similarity=0.472 Sum_probs=185.2
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCC--------
Q psy5743 398 GEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKEL-------- 469 (644)
Q Consensus 398 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~-------- 469 (644)
+.|+++||+++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (257)
T PRK10619 4 NKLNVIDLHKRYGE---HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLK 80 (257)
T ss_pred ccEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccc
Confidence 46999999999963 4699999999999999999999999999999999999999999999999988642
Q ss_pred -----ChHHHhcceEEEecCCCCCcc-cHHHHHhcCCCCCCCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCC
Q psy5743 470 -----DPMYLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERG 539 (644)
Q Consensus 470 -----~~~~lr~~i~~V~Q~~~Lf~g-TIreNI~~g~~~~~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G 539 (644)
....+|+.++||+|++.+|.. |++||+.++.......+ ++++.++++..++.++. .....
T Consensus 81 ~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~----------~~~~~ 150 (257)
T PRK10619 81 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERA----------QGKYP 150 (257)
T ss_pred cccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhh----------hhCCc
Confidence 135678899999999999974 99999987421000012 23445555555543322 14556
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhh-cCEEEEEeCCeE
Q psy5743 540 IMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIRK-SNQICVLDKGKI 617 (644)
Q Consensus 540 ~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~~-aD~Iivl~~G~i 617 (644)
..||||||||++|||||+++|+++||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++
T Consensus 151 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i 230 (257)
T PRK10619 151 VHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKI 230 (257)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 7899999999999999999999999999999999999999999998875 47999999999999975 999999999999
Q ss_pred EEecChhHHhcC
Q psy5743 618 VEIGSYAHLIKN 629 (644)
Q Consensus 618 ve~Gt~~eLl~~ 629 (644)
++.|+++++.+.
T Consensus 231 ~~~~~~~~~~~~ 242 (257)
T PRK10619 231 EEEGAPEQLFGN 242 (257)
T ss_pred EEeCCHHHhhhC
Confidence 999999998764
No 154
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-45 Score=378.35 Aligned_cols=216 Identities=33% Similarity=0.540 Sum_probs=185.1
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCC-hHHHhcce
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELD-PMYLRSQI 478 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~-~~~lr~~i 478 (644)
|+++|++++|++ ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ...+++.+
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (274)
T PRK13644 2 IRLENVSYSYPD--GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLV 79 (274)
T ss_pred EEEEEEEEEcCC--CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhhe
Confidence 689999999963 346999999999999999999999999999999999999999999999999998776 36778899
Q ss_pred EEEecCCC--CCcccHHHHHhcCCCCCCCCCH----HHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHH
Q psy5743 479 GSVSQEPT--LFSGTIYENILYGVNDSSSVTK----SDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAI 552 (644)
Q Consensus 479 ~~V~Q~~~--Lf~gTIreNI~~g~~~~~~~~~----~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaL 552 (644)
+||+|+|. +++.|++|||.++... ...+. +++.++++..++. .........||||||||++|
T Consensus 80 ~~v~q~~~~~~~~~tv~enl~~~~~~-~~~~~~~~~~~~~~~l~~~gl~-----------~~~~~~~~~LS~G~~qrv~l 147 (274)
T PRK13644 80 GIVFQNPETQFVGRTVEEDLAFGPEN-LCLPPIEIRKRVDRALAEIGLE-----------KYRHRSPKTLSGGQGQCVAL 147 (274)
T ss_pred EEEEEChhhhcccchHHHHHHhhHHH-cCCCHHHHHHHHHHHHHHCCCH-----------HHhcCCcccCCHHHHHHHHH
Confidence 99999985 6788999999987421 01232 3344444444443 33344557899999999999
Q ss_pred HHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhhcCEEEEEeCCeEEEecChhHHhcC
Q psy5743 553 ARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKN 629 (644)
Q Consensus 553 ARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eLl~~ 629 (644)
|||++.+|+++||||||++||+.+...+.+.|+++. +++|+|++||+++.+..||+|++|++|++++.|+.+++...
T Consensus 148 aral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 225 (274)
T PRK13644 148 AGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSD 225 (274)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence 999999999999999999999999999999998865 47899999999999999999999999999999999998653
No 155
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-45 Score=375.82 Aligned_cols=223 Identities=30% Similarity=0.520 Sum_probs=190.2
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCC-----CCCcEEEECCccCCC--CC
Q psy5743 398 GEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD-----PQNGKILIDGVDIKE--LD 470 (644)
Q Consensus 398 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~-----p~~G~I~idg~~i~~--~~ 470 (644)
..|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. .+
T Consensus 12 ~~l~i~nl~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~ 88 (269)
T PRK14259 12 IIISLQNVTISYGT---FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88 (269)
T ss_pred ceEEEEeEEEEECC---EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCC
Confidence 35999999999963 469999999999999999999999999999999999997 689999999999863 56
Q ss_pred hHHHhcceEEEecCCCCCcccHHHHHhcCCCCCC--CCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHH
Q psy5743 471 PMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSS--SVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQ 548 (644)
Q Consensus 471 ~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~--~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQ 548 (644)
+..+|+.++||+|++.+|..|++||+.++..... ...++++.++++..++.+.+ +.........|||||||
T Consensus 89 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS~G~~q 161 (269)
T PRK14259 89 PVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDEC-------KDKLNESGYSLSGGQQQ 161 (269)
T ss_pred HHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchh-------hhhhCCCcccCCHHHHH
Confidence 7788899999999999999999999998743210 01134556666666654322 23345566789999999
Q ss_pred HHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHH-hhcCEEEEEeC-----------Ce
Q psy5743 549 RIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTI-RKSNQICVLDK-----------GK 616 (644)
Q Consensus 549 RiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i-~~aD~Iivl~~-----------G~ 616 (644)
|++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+ ..||+|++|++ |+
T Consensus 162 rl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~ 241 (269)
T PRK14259 162 RLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGY 241 (269)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccce
Confidence 9999999999999999999999999999999999999887789999999999987 56999999996 67
Q ss_pred EEEecChhHHhcCC
Q psy5743 617 IVEIGSYAHLIKNP 630 (644)
Q Consensus 617 ive~Gt~~eLl~~~ 630 (644)
+++.|+.+++...+
T Consensus 242 ~~~~~~~~~~~~~~ 255 (269)
T PRK14259 242 LVEFNETKKIFNSP 255 (269)
T ss_pred EEEeCCHHHHHhCc
Confidence 99999999998643
No 156
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-45 Score=377.54 Aligned_cols=218 Identities=30% Similarity=0.495 Sum_probs=188.4
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
.|+++|++++|++. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+++
T Consensus 7 ~l~i~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 85 (269)
T PRK13648 7 IIVFKNVSFQYQSD-ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHI 85 (269)
T ss_pred eEEEEEEEEEcCCC-CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 48999999999752 34699999999999999999999999999999999999999999999999999988888899999
Q ss_pred EEEecCCC--CCcccHHHHHhcCCCCCCCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHH
Q psy5743 479 GSVSQEPT--LFSGTIYENILYGVNDSSSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAI 552 (644)
Q Consensus 479 ~~V~Q~~~--Lf~gTIreNI~~g~~~~~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaL 552 (644)
+||+|++. ++..|+++|+.++.... ..+ ++++.++++..++.++. .....+||||||||++|
T Consensus 86 ~~v~q~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~l 153 (269)
T PRK13648 86 GIVFQNPDNQFVGSIVKYDVAFGLENH-AVPYDEMHRRVSEALKQVDMLERA-----------DYEPNALSGGQKQRVAI 153 (269)
T ss_pred eEEEeChHHhcccccHHHHHHhhHHhc-CCCHHHHHHHHHHHHHHcCCchhh-----------hCCcccCCHHHHHHHHH
Confidence 99999984 55678999998874321 122 23455556666554332 23456899999999999
Q ss_pred HHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHhhcCEEEEEeCCeEEEecChhHHhcC
Q psy5743 553 ARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKN 629 (644)
Q Consensus 553 ARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eLl~~ 629 (644)
|||++.+|+++||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+..||+|++|++|++++.|+++++...
T Consensus 154 aral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 232 (269)
T PRK13648 154 AGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDH 232 (269)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 9999999999999999999999999999999988753 6899999999999988999999999999999999998764
No 157
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-45 Score=376.71 Aligned_cols=221 Identities=28% Similarity=0.466 Sum_probs=188.3
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCC-----CCcEEEECCccCCCCC-hH
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDP-----QNGKILIDGVDIKELD-PM 472 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p-----~~G~I~idg~~i~~~~-~~ 472 (644)
-++++||+++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++.+.+ ..
T Consensus 21 ~l~i~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 97 (276)
T PRK14271 21 AMAAVNLTLGFAG---KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVL 97 (276)
T ss_pred EEEEeeEEEEECC---EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhH
Confidence 4899999999963 4799999999999999999999999999999999999986 6999999999998764 45
Q ss_pred HHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHH----HHHHHHhhccchhhhhcCccccccCCCCCCChhHHH
Q psy5743 473 YLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDII----HAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQ 548 (644)
Q Consensus 473 ~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~----~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQ 548 (644)
.+|+.++||+|++.+|+.|++||+.++.......++++.. +.++..++.+ .+++.+.....+|||||||
T Consensus 98 ~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~l~~~~~~LSgGq~q 170 (276)
T PRK14271 98 EFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWD-------AVKDRLSDSPFRLSGGQQQ 170 (276)
T ss_pred HHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCc-------hhhhHhhCCcccCCHHHHH
Confidence 7788999999999999999999999863211112444433 2333333322 2234456778899999999
Q ss_pred HHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHHh
Q psy5743 549 RIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHLI 627 (644)
Q Consensus 549 RiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eLl 627 (644)
|++||||++++|++|||||||++||..+.+.+.+.|.++.+++|+|+|||+++.+. .||+|++|++|++++.|+++++.
T Consensus 171 rl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 250 (276)
T PRK14271 171 LLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLF 250 (276)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999998877799999999999875 59999999999999999999998
Q ss_pred cC
Q psy5743 628 KN 629 (644)
Q Consensus 628 ~~ 629 (644)
+.
T Consensus 251 ~~ 252 (276)
T PRK14271 251 SS 252 (276)
T ss_pred hC
Confidence 65
No 158
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=3.1e-45 Score=374.76 Aligned_cols=228 Identities=32% Similarity=0.428 Sum_probs=187.3
Q ss_pred EEEEEEEEEcCCC------CCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHH
Q psy5743 400 IDFNNIRFSYPSR------PDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMY 473 (644)
Q Consensus 400 I~~~~vsf~Y~~~------~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~ 473 (644)
|+++||+|+|++. .++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+||.++..++...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 82 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQ 82 (265)
T ss_pred EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHH
Confidence 7899999999631 1357999999999999999999999999999999999999999999999999998877644
Q ss_pred ---HhcceEEEecCCC--CC-cccHHHHHhcCCCCCC----CCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCC
Q psy5743 474 ---LRSQIGSVSQEPT--LF-SGTIYENILYGVNDSS----SVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLS 543 (644)
Q Consensus 474 ---lr~~i~~V~Q~~~--Lf-~gTIreNI~~g~~~~~----~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LS 543 (644)
+|+.++||+|++. ++ ..|++|||.++..... ...++++.++++..++.+ .........||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~----------~~~~~~~~~LS 152 (265)
T TIGR02769 83 RRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRS----------EDADKLPRQLS 152 (265)
T ss_pred HHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCh----------hhhhCChhhCC
Confidence 6788999999983 44 4799999975421100 012334455555554421 12345667899
Q ss_pred hhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEEEeCCeEEEe
Q psy5743 544 GGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIR-KSNQICVLDKGKIVEI 620 (644)
Q Consensus 544 GGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~ 620 (644)
||||||++||||++.+|++|||||||++||+++...+.+.|.++.+ ++|+|+|||+++.+. .||+|++|++|++++.
T Consensus 153 gGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 232 (265)
T TIGR02769 153 GGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEE 232 (265)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEE
Confidence 9999999999999999999999999999999999999999998754 789999999999996 5999999999999999
Q ss_pred cChhHHhcCCCcHHHHH
Q psy5743 621 GSYAHLIKNPNSMFNKL 637 (644)
Q Consensus 621 Gt~~eLl~~~~~~y~~l 637 (644)
|+++++....+..+..+
T Consensus 233 g~~~~~~~~~~~~~~~~ 249 (265)
T TIGR02769 233 CDVAQLLSFKHPAGRNL 249 (265)
T ss_pred CCHHHHcCCCCHHHHHH
Confidence 99999987433344434
No 159
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-45 Score=372.00 Aligned_cols=216 Identities=30% Similarity=0.439 Sum_probs=180.7
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCC------CCChHH
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIK------ELDPMY 473 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~------~~~~~~ 473 (644)
|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++. ..+...
T Consensus 3 l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (242)
T PRK11124 3 IQLNGINCFYGA---HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRE 79 (242)
T ss_pred EEEEeeEEEECC---eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHH
Confidence 789999999963 46999999999999999999999999999999999999999999999999873 223467
Q ss_pred HhcceEEEecCCCCCcc-cHHHHHhcCCCCCCCCCH----HHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHH
Q psy5743 474 LRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTK----SDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQ 548 (644)
Q Consensus 474 lr~~i~~V~Q~~~Lf~g-TIreNI~~g~~~~~~~~~----~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQ 548 (644)
+|++++|++|++.+|.+ |++|||.++.......+. +++.++++..+ ++..+......|||||||
T Consensus 80 ~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~g-----------l~~~~~~~~~~LS~G~~q 148 (242)
T PRK11124 80 LRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLR-----------LKPYADRFPLHLSGGQQQ 148 (242)
T ss_pred HHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC-----------ChhhhhCChhhCCHHHHH
Confidence 78899999999999975 999999753110000122 22333344433 444444455789999999
Q ss_pred HHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHH
Q psy5743 549 RIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHL 626 (644)
Q Consensus 549 RiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eL 626 (644)
|++||||++++|+++||||||++||+++...+.+.|+++. +++|+|+|||+++.+. .||+|++|++|++++.|+++++
T Consensus 149 rv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 228 (242)
T PRK11124 149 RVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCF 228 (242)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHh
Confidence 9999999999999999999999999999999999998875 3799999999999985 4999999999999999999998
Q ss_pred hcC
Q psy5743 627 IKN 629 (644)
Q Consensus 627 l~~ 629 (644)
.+.
T Consensus 229 ~~~ 231 (242)
T PRK11124 229 TQP 231 (242)
T ss_pred cCc
Confidence 653
No 160
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.8e-46 Score=369.45 Aligned_cols=209 Identities=30% Similarity=0.453 Sum_probs=175.5
Q ss_pred EEEEEEEEEcCCCC-CCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 400 IDFNNIRFSYPSRP-DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 400 I~~~~vsf~Y~~~~-~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
|+++|++++|++.. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +++.+
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence 57899999997411 1579999999999999999999999999999999999999999999999998863 46789
Q ss_pred EEEecCCCCCc-ccHHHHHhcCCCCCC---CCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHH
Q psy5743 479 GSVSQEPTLFS-GTIYENILYGVNDSS---SVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIAR 554 (644)
Q Consensus 479 ~~V~Q~~~Lf~-gTIreNI~~g~~~~~---~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLAR 554 (644)
+||+|++.+|. .|++||+.++..... ...++++.++++..++.++.. .....||||||||++|||
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrl~la~ 144 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFEN-----------AYPHQLSGGMRQRVALAR 144 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhh-----------CCcccCCHHHHHHHHHHH
Confidence 99999999998 699999987632100 012344555666666544333 333589999999999999
Q ss_pred HHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc--CCceEEEEccCchHH-hhcCEEEEEe--CCeEEEecChh
Q psy5743 555 ALIKKSKILLLDEATSALDAENEYLVQSAIEKLI--EGKTVLTIAHRLSTI-RKSNQICVLD--KGKIVEIGSYA 624 (644)
Q Consensus 555 All~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~--~~~TvI~IaHrl~~i-~~aD~Iivl~--~G~ive~Gt~~ 624 (644)
|++++|+++||||||++||+.+...+.+.|+++. .++|+|+|||+++.+ ..||+|++|+ +|++++.++.+
T Consensus 145 al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 145 ALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEVD 219 (220)
T ss_pred HHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEec
Confidence 9999999999999999999999999999998874 378999999999976 5699999999 79999988753
No 161
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=1.2e-45 Score=355.24 Aligned_cols=178 Identities=40% Similarity=0.663 Sum_probs=167.0
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
|+++|++++|++. ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++..+ ...+|+.++
T Consensus 1 i~~~~~~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 78 (178)
T cd03247 1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLIS 78 (178)
T ss_pred CEEEEEEEEeCCC-CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEE
Confidence 5789999999752 34699999999999999999999999999999999999999999999999988776 677889999
Q ss_pred EEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccC
Q psy5743 480 SVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKK 559 (644)
Q Consensus 480 ~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~ 559 (644)
|++|++.+|+.|++||+ ...||||||||++||||++++
T Consensus 79 ~~~q~~~~~~~tv~~~i------------------------------------------~~~LS~G~~qrv~laral~~~ 116 (178)
T cd03247 79 VLNQRPYLFDTTLRNNL------------------------------------------GRRFSGGERQRLALARILLQD 116 (178)
T ss_pred EEccCCeeecccHHHhh------------------------------------------cccCCHHHHHHHHHHHHHhcC
Confidence 99999999999999997 568999999999999999999
Q ss_pred CCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEec
Q psy5743 560 SKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIG 621 (644)
Q Consensus 560 p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~G 621 (644)
|++|||||||++||.++.+.+.+.|.++.+++|+|++||+++.+..||++++|++|++++.|
T Consensus 117 p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 117 APIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999887789999999999999999999999999998765
No 162
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-45 Score=380.78 Aligned_cols=219 Identities=27% Similarity=0.402 Sum_probs=183.9
Q ss_pred EEEEEEEEEcCCCC--CCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCC---------
Q psy5743 400 IDFNNIRFSYPSRP--DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKE--------- 468 (644)
Q Consensus 400 I~~~~vsf~Y~~~~--~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~--------- 468 (644)
|+++||+|+|++.. ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++..
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK 82 (305)
T ss_pred EEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccc
Confidence 78999999997432 1369999999999999999999999999999999999999999999999887632
Q ss_pred ---------------CChHHHhcceEEEecCC--CCCcccHHHHHhcCCCCCCCCCHH----HHHHHHHHHhhccchhhh
Q psy5743 469 ---------------LDPMYLRSQIGSVSQEP--TLFSGTIYENILYGVNDSSSVTKS----DIIHAAKEANAYGFVIDF 527 (644)
Q Consensus 469 ---------------~~~~~lr~~i~~V~Q~~--~Lf~gTIreNI~~g~~~~~~~~~~----~i~~a~~~a~l~~~i~~l 527 (644)
.+...+|+.||||+|+| .+|..|++|||.|+... ...+.+ ++.++++..++.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~-~~~~~~~~~~~~~~~l~~~gL~~----- 156 (305)
T PRK13651 83 VLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVS-MGVSKEEAKKRAAKYIELVGLDE----- 156 (305)
T ss_pred cccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHH-cCCCHHHHHHHHHHHHHHcCCCh-----
Confidence 23567889999999986 78999999999987421 113333 3444555555431
Q ss_pred hcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHH-hh
Q psy5743 528 KNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTI-RK 605 (644)
Q Consensus 528 p~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i-~~ 605 (644)
.........||||||||++|||||+.+|++|||||||++||+.+...+.+.|+++. .++|+|+|||+++.+ +.
T Consensus 157 -----~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~ 231 (305)
T PRK13651 157 -----SYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEW 231 (305)
T ss_pred -----hhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHh
Confidence 12345567899999999999999999999999999999999999999999998874 478999999999976 66
Q ss_pred cCEEEEEeCCeEEEecChhHHhcC
Q psy5743 606 SNQICVLDKGKIVEIGSYAHLIKN 629 (644)
Q Consensus 606 aD~Iivl~~G~ive~Gt~~eLl~~ 629 (644)
||+|++|++|++++.|+.+++.+.
T Consensus 232 adrv~vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 232 TKRTIFFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred CCEEEEEECCEEEEECCHHHHhcC
Confidence 999999999999999999998754
No 163
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.9e-45 Score=371.54 Aligned_cols=223 Identities=31% Similarity=0.527 Sum_probs=189.2
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCC--C---CCcEEEECCccCCCC--C
Q psy5743 398 GEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD--P---QNGKILIDGVDIKEL--D 470 (644)
Q Consensus 398 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~--p---~~G~I~idg~~i~~~--~ 470 (644)
+.|+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++ | ++|+|.++|.++... +
T Consensus 3 ~~l~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~ 79 (252)
T PRK14256 3 NKVKLEQLNVHFGK---NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79 (252)
T ss_pred cEEEEEEEEEEeCC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCC
Confidence 46999999999963 469999999999999999999999999999999999986 4 689999999998754 4
Q ss_pred hHHHhcceEEEecCCCCCc-ccHHHHHhcCCCCCCCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChh
Q psy5743 471 PMYLRSQIGSVSQEPTLFS-GTIYENILYGVNDSSSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGG 545 (644)
Q Consensus 471 ~~~lr~~i~~V~Q~~~Lf~-gTIreNI~~g~~~~~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGG 545 (644)
...+|+.++||+|++.+|. .|++||+.++.......+ ++++.++++..++.+++.. ........||||
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G 152 (252)
T PRK14256 80 PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKD-------RLKSNAMELSGG 152 (252)
T ss_pred hHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhH-------HhhCCcCcCCHH
Confidence 5567889999999999998 599999987531100011 2345666667776554432 233567789999
Q ss_pred HHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHH-hhcCEEEEEeCCeEEEecChh
Q psy5743 546 QKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYA 624 (644)
Q Consensus 546 QkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~ 624 (644)
||||++||||++++|+++|||||||+||..+.+.+.+.|+++.+++|+|+|||+++.+ ..||+|++|++|++++.|+++
T Consensus 153 ~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 232 (252)
T PRK14256 153 QQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETK 232 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999999999999987789999999999998 569999999999999999999
Q ss_pred HHhcCC
Q psy5743 625 HLIKNP 630 (644)
Q Consensus 625 eLl~~~ 630 (644)
++...+
T Consensus 233 ~~~~~~ 238 (252)
T PRK14256 233 KIFTTP 238 (252)
T ss_pred HHHhCC
Confidence 997653
No 164
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-45 Score=366.96 Aligned_cols=212 Identities=26% Similarity=0.432 Sum_probs=180.2
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
|+++|++++|++ +++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ....++++++
T Consensus 1 i~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~i~ 76 (220)
T cd03265 1 IEVENLVKKYGD---FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVR-EPREVRRRIG 76 (220)
T ss_pred CEEEEEEEEECC---EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCc-ChHHHhhcEE
Confidence 578999999963 469999999999999999999999999999999999999999999999998875 3456788999
Q ss_pred EEecCCCCCcc-cHHHHHhcCCCCCC---CCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHH
Q psy5743 480 SVSQEPTLFSG-TIYENILYGVNDSS---SVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARA 555 (644)
Q Consensus 480 ~V~Q~~~Lf~g-TIreNI~~g~~~~~---~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARA 555 (644)
|++|++.+|.. |++||+.++..... ...++++.++++..++.++.. +. ...||||||||++||||
T Consensus 77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~----~~~LS~G~~qr~~la~a 145 (220)
T cd03265 77 IVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAAD-------RL----VKTYSGGMRRRLEIARS 145 (220)
T ss_pred EecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhh-------CC----hhhCCHHHHHHHHHHHH
Confidence 99999998875 99999987421100 012345666677766654332 22 35799999999999999
Q ss_pred HccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHH
Q psy5743 556 LIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHL 626 (644)
Q Consensus 556 ll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eL 626 (644)
++.+|+++||||||++||+++.+.+.+.|.++.+ ++|+|+|||+++.+. .||+|++|++|++++.|+++++
T Consensus 146 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 146 LVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred HhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 9999999999999999999999999999988753 689999999999886 5999999999999999998774
No 165
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.7e-45 Score=371.52 Aligned_cols=221 Identities=29% Similarity=0.502 Sum_probs=188.5
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCC-----CcEEEECCccCCC--CCh
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQ-----NGKILIDGVDIKE--LDP 471 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~-----~G~I~idg~~i~~--~~~ 471 (644)
.|+++|++|+|++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++.. .+.
T Consensus 4 ~l~~~~l~~~~~~---~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 80 (251)
T PRK14249 4 KIKIRGVNFFYHK---HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDV 80 (251)
T ss_pred eEEEEEEEEEECC---eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccCh
Confidence 5899999999963 46999999999999999999999999999999999999997 6999999999865 345
Q ss_pred HHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHH
Q psy5743 472 MYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQK 547 (644)
Q Consensus 472 ~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQk 547 (644)
..+|+.++||+|++.+|..|++||+.++........ ++++.++++..++.+++ .......+.+||||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS~Gq~ 153 (251)
T PRK14249 81 VNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEV-------KDNLHKSGLALSGGQQ 153 (251)
T ss_pred HHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhh-------hhHhhCCcccCCHHHH
Confidence 678899999999999999999999998632100011 23344455555554433 2345677889999999
Q ss_pred HHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhh-cCEEEEEeCCeEEEecChhHH
Q psy5743 548 QRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHL 626 (644)
Q Consensus 548 QRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~-aD~Iivl~~G~ive~Gt~~eL 626 (644)
||++||||++.+|+++||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+.+++
T Consensus 154 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14249 154 QRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEI 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988667999999999999865 799999999999999999998
Q ss_pred hcC
Q psy5743 627 IKN 629 (644)
Q Consensus 627 l~~ 629 (644)
...
T Consensus 234 ~~~ 236 (251)
T PRK14249 234 FSR 236 (251)
T ss_pred HhC
Confidence 754
No 166
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-45 Score=384.54 Aligned_cols=230 Identities=22% Similarity=0.366 Sum_probs=188.0
Q ss_pred EEEEEEEEEcCCCCC-CccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCC----CCCcEEEECCccCCCCChHHH
Q psy5743 400 IDFNNIRFSYPSRPD-AVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD----PQNGKILIDGVDIKELDPMYL 474 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~-~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~----p~~G~I~idg~~i~~~~~~~l 474 (644)
|+++|++++|+.... ..+|+||||+|++||++||||+||||||||+++|+|+++ |++|+|.+||+|+..++.+.+
T Consensus 4 L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~ 83 (326)
T PRK11022 4 LNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKER 83 (326)
T ss_pred EEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHH
Confidence 799999999975321 369999999999999999999999999999999999998 489999999999999988776
Q ss_pred hc----ceEEEecCCC--CCc-ccHH----HHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCC
Q psy5743 475 RS----QIGSVSQEPT--LFS-GTIY----ENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLS 543 (644)
Q Consensus 475 r~----~i~~V~Q~~~--Lf~-gTIr----eNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LS 543 (644)
++ .|+||+|+|. ++. -|+. +|+...........++++.++++..++.+.. .........||
T Consensus 84 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~--------~~l~~~p~~LS 155 (326)
T PRK11022 84 RNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPA--------SRLDVYPHQLS 155 (326)
T ss_pred HHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChH--------HHHhCCchhCC
Confidence 54 6999999995 332 2454 4444321100012345667777777775421 12345667899
Q ss_pred hhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHH-hhcCEEEEEeCCeEEEe
Q psy5743 544 GGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTI-RKSNQICVLDKGKIVEI 620 (644)
Q Consensus 544 GGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~ 620 (644)
||||||++|||||+.+|++||+|||||+||..+...+.+.|.++.+ +.|+|+|||+++.+ +.||+|++|.+|+|+|.
T Consensus 156 gGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~ 235 (326)
T PRK11022 156 GGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVET 235 (326)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999998754 78999999999998 56999999999999999
Q ss_pred cChhHHhcCCCcHHHHH
Q psy5743 621 GSYAHLIKNPNSMFNKL 637 (644)
Q Consensus 621 Gt~~eLl~~~~~~y~~l 637 (644)
|+.+++++++...|.+.
T Consensus 236 g~~~~~~~~p~hpyt~~ 252 (326)
T PRK11022 236 GKAHDIFRAPRHPYTQA 252 (326)
T ss_pred CCHHHHhhCCCChHHHH
Confidence 99999997655566543
No 167
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=6.4e-46 Score=340.56 Aligned_cols=210 Identities=32% Similarity=0.503 Sum_probs=186.2
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChH---HHhc
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPM---YLRS 476 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~---~lr~ 476 (644)
|+|+||+.+|++. +++|+||||+|++||++-++||||||||||+|+|++...|++|+|.++|+|+..+... -+|+
T Consensus 2 I~f~~V~k~Y~~g--~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR 79 (223)
T COG2884 2 IRFENVSKAYPGG--REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRR 79 (223)
T ss_pred eeehhhhhhcCCC--chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhh
Confidence 7899999999863 6799999999999999999999999999999999999999999999999999888765 5799
Q ss_pred ceEEEecCCCCCc-ccHHHHHhcCCCCC---CCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHH
Q psy5743 477 QIGSVSQEPTLFS-GTIYENILYGVNDS---SSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAI 552 (644)
Q Consensus 477 ~i~~V~Q~~~Lf~-gTIreNI~~g~~~~---~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaL 552 (644)
+||+|+||-.|.. -|+.||++|.-.-. +..-.+++.++++.+|+.+-...+| ..|||||+||++|
T Consensus 80 ~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP-----------~~LSGGEQQRvaI 148 (223)
T COG2884 80 QIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALP-----------SQLSGGEQQRVAI 148 (223)
T ss_pred eeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCc-----------cccCchHHHHHHH
Confidence 9999999999775 69999999854210 1123567888999999999888888 5799999999999
Q ss_pred HHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhhc-CEEEEEeCCeEEEecC
Q psy5743 553 ARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIRKS-NQICVLDKGKIVEIGS 622 (644)
Q Consensus 553 ARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~~a-D~Iivl~~G~ive~Gt 622 (644)
|||+..+|++||=||||-+||+++...|++.+.++- .|.||++.||+.+.+..+ -+++.+++|+++....
T Consensus 149 ARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 149 ARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred HHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEeccc
Confidence 999999999999999999999999999999988863 488999999999999765 6789999999986543
No 168
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-45 Score=376.76 Aligned_cols=224 Identities=27% Similarity=0.418 Sum_probs=190.9
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
.|+++|++++|++ +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+|+.+
T Consensus 11 ~l~i~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 87 (265)
T PRK10575 11 TFALRNVSFRVPG---RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKV 87 (265)
T ss_pred eEEEeeEEEEECC---EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhhe
Confidence 4899999999963 4699999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCCCC-------CCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHH
Q psy5743 479 GSVSQEPTLFSG-TIYENILYGVNDS-------SSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRI 550 (644)
Q Consensus 479 ~~V~Q~~~Lf~g-TIreNI~~g~~~~-------~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRi 550 (644)
+||+|++.++.+ |++||+.++.... ....++++.++++..++.+++... ...||||||||+
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgG~~qrv 156 (265)
T PRK10575 88 AYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRL-----------VDSLSGGERQRA 156 (265)
T ss_pred EEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCC-----------cccCCHHHHHHH
Confidence 999999877664 9999999863210 011244566677777765443332 247999999999
Q ss_pred HHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHHh
Q psy5743 551 AIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHLI 627 (644)
Q Consensus 551 aLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eLl 627 (644)
+||||++.+|++|||||||++||..+.+.+.+.|.++.+ ++|+|+|||+++.+. .||+|++|++|++++.|+.+++.
T Consensus 157 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (265)
T PRK10575 157 WIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELM 236 (265)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhc
Confidence 999999999999999999999999999999999988753 789999999999984 69999999999999999999986
Q ss_pred cCCCcHHHHHH
Q psy5743 628 KNPNSMFNKLM 638 (644)
Q Consensus 628 ~~~~~~y~~l~ 638 (644)
+. ..+.+++
T Consensus 237 ~~--~~~~~~~ 245 (265)
T PRK10575 237 RG--ETLEQIY 245 (265)
T ss_pred CH--HHHHHHh
Confidence 42 3444444
No 169
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.9e-45 Score=377.18 Aligned_cols=219 Identities=31% Similarity=0.498 Sum_probs=183.7
Q ss_pred EEEEEEEEEcCCCC--CCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCC----ChHH
Q psy5743 400 IDFNNIRFSYPSRP--DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKEL----DPMY 473 (644)
Q Consensus 400 I~~~~vsf~Y~~~~--~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~----~~~~ 473 (644)
|+++||+++|++.. ..++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++... +...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 78999999997421 14699999999999999999999999999999999999999999999999998764 3567
Q ss_pred HhcceEEEecCC--CCCcccHHHHHhcCCCCCCCCCHHHH----HHHHHHHhhccchhhhhcCccccccCCCCCCChhHH
Q psy5743 474 LRSQIGSVSQEP--TLFSGTIYENILYGVNDSSSVTKSDI----IHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQK 547 (644)
Q Consensus 474 lr~~i~~V~Q~~--~Lf~gTIreNI~~g~~~~~~~~~~~i----~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQk 547 (644)
+|+.|+|++|++ .+|+.|++|||.++... ...+.++. .++++..++.+ .........||||||
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgG~~ 151 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQN-FGVSQEEAEALAREKLALVGISE----------SLFEKNPFELSGGQM 151 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCCh----------hhhhCCcccCCHHHH
Confidence 888999999998 68899999999876321 11233333 23333333321 123455678999999
Q ss_pred HHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC-CceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhH
Q psy5743 548 QRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE-GKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAH 625 (644)
Q Consensus 548 QRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~-~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~e 625 (644)
||++||||++++|++||||||||+||+++.+.+.+.|.++.+ ++|+|+|||+++.+. .||+|++|++|++++.|++++
T Consensus 152 qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 231 (280)
T PRK13649 152 RRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKD 231 (280)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999999999999999999999988753 789999999999885 599999999999999999999
Q ss_pred HhcC
Q psy5743 626 LIKN 629 (644)
Q Consensus 626 Ll~~ 629 (644)
+.+.
T Consensus 232 ~~~~ 235 (280)
T PRK13649 232 IFQD 235 (280)
T ss_pred HhcC
Confidence 8753
No 170
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=3.4e-45 Score=369.88 Aligned_cols=215 Identities=27% Similarity=0.465 Sum_probs=184.6
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHH-hcce
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYL-RSQI 478 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~l-r~~i 478 (644)
|+++|++++|++ +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+.... |+.+
T Consensus 3 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (242)
T TIGR03411 3 LYLEGLSVSFDG---FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGI 79 (242)
T ss_pred EEEEeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCe
Confidence 789999999963 469999999999999999999999999999999999999999999999999988876654 4579
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCCCCC-----------CCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhH
Q psy5743 479 GSVSQEPTLFSG-TIYENILYGVNDSS-----------SVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQ 546 (644)
Q Consensus 479 ~~V~Q~~~Lf~g-TIreNI~~g~~~~~-----------~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQ 546 (644)
+|++|++.+|.+ |++||+.++..... ..+++++.++++.. |++.........|||||
T Consensus 80 ~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~Ge 148 (242)
T TIGR03411 80 GRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETI-----------GLADEADRLAGLLSHGQ 148 (242)
T ss_pred eEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHc-----------CCchhhcCChhhCCHHH
Confidence 999999999987 99999998642100 00122333344433 33334455667899999
Q ss_pred HHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhH
Q psy5743 547 KQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAH 625 (644)
Q Consensus 547 kQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~e 625 (644)
|||++||||++++|++|+||||||+||+++...+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|++++
T Consensus 149 ~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~ 228 (242)
T TIGR03411 149 KQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQ 228 (242)
T ss_pred HHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHH
Confidence 9999999999999999999999999999999999999999877899999999999986 599999999999999999999
Q ss_pred Hhc
Q psy5743 626 LIK 628 (644)
Q Consensus 626 Ll~ 628 (644)
+..
T Consensus 229 ~~~ 231 (242)
T TIGR03411 229 VQA 231 (242)
T ss_pred Hhc
Confidence 874
No 171
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=4.5e-45 Score=368.45 Aligned_cols=216 Identities=34% Similarity=0.528 Sum_probs=183.0
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCC--ChHHHhcc
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKEL--DPMYLRSQ 477 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~--~~~~lr~~ 477 (644)
|+++|++++|++ +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.+||.++... +...+|+.
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (240)
T PRK09493 2 IEFKNVSKHFGP---TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQE 78 (240)
T ss_pred EEEEeEEEEECC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhc
Confidence 689999999963 4699999999999999999999999999999999999999999999999998864 34577889
Q ss_pred eEEEecCCCCCc-ccHHHHHhcCCCCCCCCCHH----HHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHH
Q psy5743 478 IGSVSQEPTLFS-GTIYENILYGVNDSSSVTKS----DIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAI 552 (644)
Q Consensus 478 i~~V~Q~~~Lf~-gTIreNI~~g~~~~~~~~~~----~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaL 552 (644)
++|++|++.+|. .|++||+.++.......+.+ ++.++++.. |++.........||||||||++|
T Consensus 79 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~LS~G~~qrv~l 147 (240)
T PRK09493 79 AGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKV-----------GLAERAHHYPSELSGGQQQRVAI 147 (240)
T ss_pred eEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHc-----------CChHHHhcChhhcCHHHHHHHHH
Confidence 999999999886 69999998763110012222 233333333 44444445567899999999999
Q ss_pred HHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHHhcC
Q psy5743 553 ARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHLIKN 629 (644)
Q Consensus 553 ARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eLl~~ 629 (644)
|||++++|++++|||||++||.++...+.+.|.++. +++|+|+|||+++.+. .||+|++|++|++++.|+++++++.
T Consensus 148 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (240)
T PRK09493 148 ARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN 226 (240)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcC
Confidence 999999999999999999999999999999998875 4799999999999985 5999999999999999999998764
No 172
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.6e-45 Score=371.27 Aligned_cols=221 Identities=31% Similarity=0.484 Sum_probs=189.0
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCC-----CCcEEEECCccCC-CCChH
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDP-----QNGKILIDGVDIK-ELDPM 472 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p-----~~G~I~idg~~i~-~~~~~ 472 (644)
.++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++. ..+..
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 79 (249)
T PRK14253 3 KFNIENLDLFYGE---NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVA 79 (249)
T ss_pred eEEEeccEEEECC---eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchH
Confidence 4889999999963 4699999999999999999999999999999999999986 5999999999986 45667
Q ss_pred HHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHH
Q psy5743 473 YLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQ 548 (644)
Q Consensus 473 ~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQ 548 (644)
.+|+.++|++|++.+|..|++||+.++.......+ ++++.++++..++.+.+. .........|||||||
T Consensus 80 ~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~LS~G~~q 152 (249)
T PRK14253 80 DLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVK-------DRLKSHAFGLSGGQQQ 152 (249)
T ss_pred HHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhh-------HHhhcCcccCCHHHHH
Confidence 88999999999999999999999998632110011 234455566666554332 3345566789999999
Q ss_pred HHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhh-cCEEEEEeCCeEEEecChhHHh
Q psy5743 549 RIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLI 627 (644)
Q Consensus 549 RiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~-aD~Iivl~~G~ive~Gt~~eLl 627 (644)
|++||||++.+|+++||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+.+++.
T Consensus 153 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (249)
T PRK14253 153 RLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIF 232 (249)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999998778999999999999765 9999999999999999999987
Q ss_pred cC
Q psy5743 628 KN 629 (644)
Q Consensus 628 ~~ 629 (644)
..
T Consensus 233 ~~ 234 (249)
T PRK14253 233 SN 234 (249)
T ss_pred cC
Confidence 54
No 173
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=9.7e-46 Score=366.04 Aligned_cols=203 Identities=36% Similarity=0.607 Sum_probs=173.0
Q ss_pred EEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEE
Q psy5743 401 DFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGS 480 (644)
Q Consensus 401 ~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~ 480 (644)
+++|++++|++. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+...+|+.++|
T Consensus 1 ~~~~l~~~~~~~-~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (211)
T cd03225 1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGL 79 (211)
T ss_pred CceeEEEecCCC-CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceE
Confidence 478999999742 2579999999999999999999999999999999999999999999999999988888888999999
Q ss_pred EecCC--CCCcccHHHHHhcCCCCCCCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHH
Q psy5743 481 VSQEP--TLFSGTIYENILYGVNDSSSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIAR 554 (644)
Q Consensus 481 V~Q~~--~Lf~gTIreNI~~g~~~~~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLAR 554 (644)
++|++ .+++.|++||+.++.... ..+ ++++.++++..++.++ +......||||||||++|||
T Consensus 80 ~~q~~~~~~~~~t~~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrv~lar 147 (211)
T cd03225 80 VFQNPDDQFFGPTVEEEVAFGLENL-GLPEEEIEERVEEALELVGLEGL-----------RDRSPFTLSGGQKQRVAIAG 147 (211)
T ss_pred EecChhhhcCCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCcHhh-----------hcCCcccCCHHHHHHHHHHH
Confidence 99998 467899999998863210 122 2234445555544333 33445789999999999999
Q ss_pred HHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC-CceEEEEccCchHHhh-cCEEEEEeCCe
Q psy5743 555 ALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE-GKTVLTIAHRLSTIRK-SNQICVLDKGK 616 (644)
Q Consensus 555 All~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~-~~TvI~IaHrl~~i~~-aD~Iivl~~G~ 616 (644)
|++++|+++|||||||+||+++.+.+.+.|.++.+ ++|+|+|||+++.+.. ||+|++|++|+
T Consensus 148 al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 148 VLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 99999999999999999999999999999988754 7899999999999977 99999999985
No 174
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-45 Score=390.55 Aligned_cols=219 Identities=31% Similarity=0.528 Sum_probs=187.8
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.++.+ .++.+
T Consensus 19 ~l~l~~v~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i 93 (377)
T PRK11607 19 LLEIRNLTKSFDG---QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRPI 93 (377)
T ss_pred eEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCCE
Confidence 4999999999963 468999999999999999999999999999999999999999999999999987664 57899
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCCCCCCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHH
Q psy5743 479 GSVSQEPTLFSG-TIYENILYGVNDSSSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIA 553 (644)
Q Consensus 479 ~~V~Q~~~Lf~g-TIreNI~~g~~~~~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLA 553 (644)
|||+|++.+|.. |++|||.|+.... ..+ ++++.++++..++.++..+.| ..||||||||++||
T Consensus 94 g~vfQ~~~lfp~ltv~eNi~~~l~~~-~~~~~~~~~~v~~~l~~l~L~~~~~~~~-----------~~LSgGq~QRVaLA 161 (377)
T PRK11607 94 NMMFQSYALFPHMTVEQNIAFGLKQD-KLPKAEIASRVNEMLGLVHMQEFAKRKP-----------HQLSGGQRQRVALA 161 (377)
T ss_pred EEEeCCCccCCCCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHH
Confidence 999999999975 9999999874321 122 234556666666654443333 57999999999999
Q ss_pred HHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhHHhcCC
Q psy5743 554 RALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHLIKNP 630 (644)
Q Consensus 554 RAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~eLl~~~ 630 (644)
|||+++|++|+||||||+||..+...+.+.|+++.+ +.|+|+|||+++.+ ..||+|++|++|++++.|+++|+..++
T Consensus 162 RAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p 241 (377)
T PRK11607 162 RSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHP 241 (377)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCC
Confidence 999999999999999999999999999888877643 68999999999985 669999999999999999999998765
Q ss_pred CcHH
Q psy5743 631 NSMF 634 (644)
Q Consensus 631 ~~~y 634 (644)
...|
T Consensus 242 ~~~~ 245 (377)
T PRK11607 242 TTRY 245 (377)
T ss_pred ccHH
Confidence 5444
No 175
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=1.2e-45 Score=365.98 Aligned_cols=205 Identities=30% Similarity=0.562 Sum_probs=173.7
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. ++.++
T Consensus 1 i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~ 75 (213)
T cd03301 1 VELENVTKRFGN---VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIA 75 (213)
T ss_pred CEEEeeEEEECC---eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEE
Confidence 578999999964 4699999999999999999999999999999999999999999999999999776543 56899
Q ss_pred EEecCCCCCc-ccHHHHHhcCCCCCCCCCH----HHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHH
Q psy5743 480 SVSQEPTLFS-GTIYENILYGVNDSSSVTK----SDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIAR 554 (644)
Q Consensus 480 ~V~Q~~~Lf~-gTIreNI~~g~~~~~~~~~----~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLAR 554 (644)
|++|++.+|. .|++||+.++.... ..+. +++.++++..++.++ .......||||||||++|||
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qr~~lar 143 (213)
T cd03301 76 MVFQNYALYPHMTVYDNIAFGLKLR-KVPKDEIDERVREVAELLQIEHL-----------LDRKPKQLSGGQRQRVALGR 143 (213)
T ss_pred EEecChhhccCCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCHHH-----------HhCChhhCCHHHHHHHHHHH
Confidence 9999999985 69999998863210 1222 234444555554333 33444689999999999999
Q ss_pred HHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHhh-cCEEEEEeCCeEEEec
Q psy5743 555 ALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIG 621 (644)
Q Consensus 555 All~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~~-aD~Iivl~~G~ive~G 621 (644)
|++++|+++||||||++||+++.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 144 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 144 AIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999999999999999999988753 7899999999998765 9999999999999876
No 176
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=1.2e-45 Score=366.08 Aligned_cols=204 Identities=33% Similarity=0.533 Sum_probs=175.2
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChH---HHhc
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPM---YLRS 476 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~---~lr~ 476 (644)
|+++|++++|++ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++.. .+++
T Consensus 2 l~~~~l~~~~~~--~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (214)
T TIGR02673 2 IEFHNVSKAYPG--GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRR 79 (214)
T ss_pred EEEEeeeEEeCC--CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHh
Confidence 689999999952 35799999999999999999999999999999999999999999999999999887643 4678
Q ss_pred ceEEEecCCCCCc-ccHHHHHhcCCCCC---CCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHH
Q psy5743 477 QIGSVSQEPTLFS-GTIYENILYGVNDS---SSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAI 552 (644)
Q Consensus 477 ~i~~V~Q~~~Lf~-gTIreNI~~g~~~~---~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaL 552 (644)
.++|++|++.+|. .|++||+.++.... ....++++.++++..++.++..+.| ..||||||||++|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~l 148 (214)
T TIGR02673 80 RIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFP-----------EQLSGGEQQRVAI 148 (214)
T ss_pred heEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCh-----------hhCCHHHHHHHHH
Confidence 9999999999996 69999998852210 0112456677777777655443333 5799999999999
Q ss_pred HHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhh-cCEEEEEeCCe
Q psy5743 553 ARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIRK-SNQICVLDKGK 616 (644)
Q Consensus 553 ARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~~-aD~Iivl~~G~ 616 (644)
|||++++|+++||||||++||+.+...+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|+
T Consensus 149 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 149 ARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 999999999999999999999999999999998864 47999999999999875 89999999985
No 177
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-45 Score=373.51 Aligned_cols=224 Identities=29% Similarity=0.460 Sum_probs=190.9
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
|+++|++++|++ +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++..++...+++.++
T Consensus 3 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (255)
T PRK11231 3 LRTENLTVGYGT---KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLA 79 (255)
T ss_pred EEEEeEEEEECC---EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheE
Confidence 789999999963 46999999999999999999999999999999999999999999999999998888888888999
Q ss_pred EEecCCCCCcc-cHHHHHhcCCCCC-------CCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHH
Q psy5743 480 SVSQEPTLFSG-TIYENILYGVNDS-------SSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIA 551 (644)
Q Consensus 480 ~V~Q~~~Lf~g-TIreNI~~g~~~~-------~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRia 551 (644)
|++|++.+|.+ |++||+.++.... ...+++++.++++..++.++ .......||||||||++
T Consensus 80 ~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~ 148 (255)
T PRK11231 80 LLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHL-----------ADRRLTDLSGGQRQRAF 148 (255)
T ss_pred EecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHH-----------HcCCcccCCHHHHHHHH
Confidence 99999999876 9999999863210 01123345556666655432 23345789999999999
Q ss_pred HHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHHhcC
Q psy5743 552 IARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHLIKN 629 (644)
Q Consensus 552 LARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eLl~~ 629 (644)
||||++++|++|||||||++||+++...+.+.|+++. +++|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 149 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~- 227 (255)
T PRK11231 149 LAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT- 227 (255)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcC-
Confidence 9999999999999999999999999999999998865 4789999999999875 699999999999999999999864
Q ss_pred CCcHHHHHHH
Q psy5743 630 PNSMFNKLMK 639 (644)
Q Consensus 630 ~~~~y~~l~~ 639 (644)
...+.+.+.
T Consensus 228 -~~~~~~~~~ 236 (255)
T PRK11231 228 -PGLLRTVFD 236 (255)
T ss_pred -HHHHHHHhC
Confidence 244555553
No 178
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-45 Score=391.00 Aligned_cols=208 Identities=34% Similarity=0.548 Sum_probs=178.9
Q ss_pred ccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHH----hcceEEEecCCCCCc-c
Q psy5743 416 VILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYL----RSQIGSVSQEPTLFS-G 490 (644)
Q Consensus 416 ~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~l----r~~i~~V~Q~~~Lf~-g 490 (644)
++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++..++...+ |++++||+|++.+|. .
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 47999999999999999999999999999999999999999999999999998887654 458999999999997 5
Q ss_pred cHHHHHhcCCCCCC---CCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeec
Q psy5743 491 TIYENILYGVNDSS---SVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDE 567 (644)
Q Consensus 491 TIreNI~~g~~~~~---~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDE 567 (644)
|++|||.++..... ...++++.++++..++.++..+.| .+||||||||++|||||+.+|++|||||
T Consensus 122 Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~-----------~~LSgGq~QRv~LArAL~~~P~iLLLDE 190 (400)
T PRK10070 122 TVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYP-----------DELSGGMRQRVGLARALAINPDILLMDE 190 (400)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCc-----------ccCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 99999998632100 012345667777777766554444 4899999999999999999999999999
Q ss_pred ccCCCCHHHHHHHHHHHHHHc--CCceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhHHhcCCCcHH
Q psy5743 568 ATSALDAENEYLVQSAIEKLI--EGKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHLIKNPNSMF 634 (644)
Q Consensus 568 aTSaLD~~~e~~i~~~l~~~~--~~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~eLl~~~~~~y 634 (644)
|||+||+.+.+.+++.|.++. .++|+|+|||+++.+ +.||+|++|++|++++.|++++++.++...|
T Consensus 191 Pts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~~~~~~ 260 (400)
T PRK10070 191 AFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDY 260 (400)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhCcccHH
Confidence 999999999999999998874 378999999999987 5699999999999999999999987543334
No 179
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.2e-45 Score=375.06 Aligned_cols=222 Identities=31% Similarity=0.532 Sum_probs=189.7
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCC-----CCCcEEEECCccCCC--CC
Q psy5743 398 GEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD-----PQNGKILIDGVDIKE--LD 470 (644)
Q Consensus 398 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~-----p~~G~I~idg~~i~~--~~ 470 (644)
..|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. .+
T Consensus 38 ~~l~i~~l~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~ 114 (285)
T PRK14254 38 TVIEARDLNVFYGD---EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114 (285)
T ss_pred ceEEEEEEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccc
Confidence 35999999999963 469999999999999999999999999999999999997 689999999999864 35
Q ss_pred hHHHhcceEEEecCCCCCcccHHHHHhcCCCCC--CCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHH
Q psy5743 471 PMYLRSQIGSVSQEPTLFSGTIYENILYGVNDS--SSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQ 548 (644)
Q Consensus 471 ~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~--~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQ 548 (644)
...+|+.++||+|++.+|..|++||+.++.... ....++++.++++..++.+.+.. ........|||||||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~LSgGe~q 187 (285)
T PRK14254 115 PVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKD-------QLDSSGLDLSGGQQQ 187 (285)
T ss_pred hHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHH-------HHhCCcccCCHHHHH
Confidence 567888999999999999999999998753210 00124566777777776544432 235567799999999
Q ss_pred HHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhh-cCEEE-EEeCCeEEEecChhHH
Q psy5743 549 RIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRK-SNQIC-VLDKGKIVEIGSYAHL 626 (644)
Q Consensus 549 RiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~-aD~Ii-vl~~G~ive~Gt~~eL 626 (644)
|++|||||+++|+|||||||||+||..+.+.+.+.|+++.+++|+|+|||+++.+.. ||+++ +|++|+|++.|+++++
T Consensus 188 rv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~ 267 (285)
T PRK14254 188 RLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKI 267 (285)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999998777899999999999865 99975 5799999999999998
Q ss_pred hcC
Q psy5743 627 IKN 629 (644)
Q Consensus 627 l~~ 629 (644)
.++
T Consensus 268 ~~~ 270 (285)
T PRK14254 268 FEN 270 (285)
T ss_pred HhC
Confidence 764
No 180
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=3.3e-45 Score=366.74 Aligned_cols=215 Identities=36% Similarity=0.519 Sum_probs=175.1
Q ss_pred EEEEEEEEEcCCCC-CCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCCh---HHHh
Q psy5743 400 IDFNNIRFSYPSRP-DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDP---MYLR 475 (644)
Q Consensus 400 I~~~~vsf~Y~~~~-~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~---~~lr 475 (644)
|+++||+++|++.. +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 78999999996421 1369999999999999999999999999999999999999999999999999988774 5778
Q ss_pred cceEEEecCC--CCC-cccHHHHHhcCCCCCC-CCCHHHHHHHHHHHhhccchhhhhcCcc-ccccCCCCCCChhHHHHH
Q psy5743 476 SQIGSVSQEP--TLF-SGTIYENILYGVNDSS-SVTKSDIIHAAKEANAYGFVIDFKNGFD-TIVGERGIMLSGGQKQRI 550 (644)
Q Consensus 476 ~~i~~V~Q~~--~Lf-~gTIreNI~~g~~~~~-~~~~~~i~~a~~~a~l~~~i~~lp~Gl~-T~ige~G~~LSGGQkQRi 550 (644)
+.++|++|++ .++ ..|++||+.++..... ...+++..+++ .+.++.+ |+. ........+||||||||+
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~~LS~G~~qrv 154 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAV-----LLLLVGV--GLPEEVLNRYPHELSGGQRQRV 154 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHH-----HHHHHHC--CCChhHhhCCchhcCHHHHHHH
Confidence 8999999999 344 5799999986422100 01112212111 1112222 332 345566788999999999
Q ss_pred HHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEEEeCCeEEEec
Q psy5743 551 AIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIG 621 (644)
Q Consensus 551 aLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~G 621 (644)
+||||++.+|++|||||||++||+++...+.+.|.++.+ ++|+|++||+++.+. .||+|++|++|++++.|
T Consensus 155 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 155 AIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 999999999999999999999999999999999998764 789999999999987 69999999999998765
No 181
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.2e-45 Score=375.93 Aligned_cols=228 Identities=31% Similarity=0.463 Sum_probs=189.7
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCC-----CCCcEEEECCccCCCC--Ch
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD-----PQNGKILIDGVDIKEL--DP 471 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~-----p~~G~I~idg~~i~~~--~~ 471 (644)
.|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.+||.++... +.
T Consensus 39 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~ 115 (286)
T PRK14275 39 HVVAKNFSIYYGE---FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDE 115 (286)
T ss_pred EEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccch
Confidence 5899999999963 369999999999999999999999999999999999864 4999999999998653 33
Q ss_pred HHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHH
Q psy5743 472 MYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQK 547 (644)
Q Consensus 472 ~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQk 547 (644)
..+|+.++||+|++.+|.+|++|||.++.......+ ++++.++++..++.+.+.. ........||||||
T Consensus 116 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LSgGq~ 188 (286)
T PRK14275 116 VLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSD-------RLDKNALGLSGGQQ 188 (286)
T ss_pred HHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhh-------HhhCChhhCCHHHH
Confidence 467889999999999999999999998632100001 2345566666665433321 23456678999999
Q ss_pred HHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHH
Q psy5743 548 QRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHL 626 (644)
Q Consensus 548 QRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eL 626 (644)
||++||||++.+|++|||||||++||+++...+.+.|+++.+++|+|+|||+++.+. .||+|++|++|++++.|+++++
T Consensus 189 qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~~ 268 (286)
T PRK14275 189 QRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQL 268 (286)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999998877789999999999985 5999999999999999999999
Q ss_pred hcCCCcHHHH
Q psy5743 627 IKNPNSMFNK 636 (644)
Q Consensus 627 l~~~~~~y~~ 636 (644)
.+.+...+.+
T Consensus 269 ~~~~~~~~~~ 278 (286)
T PRK14275 269 FTNPKDRMTE 278 (286)
T ss_pred HhCCCcHHHH
Confidence 8653333433
No 182
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.6e-45 Score=370.84 Aligned_cols=221 Identities=30% Similarity=0.474 Sum_probs=188.6
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCC-----CCcEEEECCccCCCC--Ch
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDP-----QNGKILIDGVDIKEL--DP 471 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p-----~~G~I~idg~~i~~~--~~ 471 (644)
-|+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.+||.++... +.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (251)
T PRK14270 4 KMESKNLNLWYGE---KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDV 80 (251)
T ss_pred EEEEEEeEEEECC---eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccH
Confidence 4899999999963 4699999999999999999999999999999999999985 799999999999653 34
Q ss_pred HHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHH
Q psy5743 472 MYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQK 547 (644)
Q Consensus 472 ~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQk 547 (644)
..+|+.++|++|++.+|..|++||+.++.......+ ++++.++++.+++.+.+.. ........||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LS~G~~ 153 (251)
T PRK14270 81 VELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKD-------DLKKSALKLSGGQQ 153 (251)
T ss_pred HHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhh-------HhhCCcccCCHHHH
Confidence 567889999999999999999999997632111011 2345566777766443322 23456778999999
Q ss_pred HHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHH
Q psy5743 548 QRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHL 626 (644)
Q Consensus 548 QRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eL 626 (644)
||++||||++++|+|+|||||||+||..+...+.+.|++..+++|+|+|||+++.+. .||+|++|++|++++.|+.+++
T Consensus 154 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14270 154 QRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKI 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHH
Confidence 999999999999999999999999999999999999998877899999999999875 4999999999999999999998
Q ss_pred hcC
Q psy5743 627 IKN 629 (644)
Q Consensus 627 l~~ 629 (644)
...
T Consensus 234 ~~~ 236 (251)
T PRK14270 234 FLE 236 (251)
T ss_pred hcC
Confidence 764
No 183
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7e-45 Score=369.87 Aligned_cols=225 Identities=29% Similarity=0.521 Sum_probs=186.0
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCC-----CcEEEECCccCCC--CChH
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQ-----NGKILIDGVDIKE--LDPM 472 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~-----~G~I~idg~~i~~--~~~~ 472 (644)
|+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.++.. .+..
T Consensus 5 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 81 (252)
T PRK14272 5 LSAQDVNIYYGD---KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPV 81 (252)
T ss_pred EEEeeeEEEECC---EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHH
Confidence 789999999963 46999999999999999999999999999999999999875 8999999999875 3455
Q ss_pred HHhcceEEEecCCCCCcc-cHHHHHhcCCCCCCCCCHHHHHHH----HHHHhhccchhhhhcCccccccCCCCCCChhHH
Q psy5743 473 YLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHA----AKEANAYGFVIDFKNGFDTIVGERGIMLSGGQK 547 (644)
Q Consensus 473 ~lr~~i~~V~Q~~~Lf~g-TIreNI~~g~~~~~~~~~~~i~~a----~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQk 547 (644)
.+|+.++|++|++.+|.+ |++||+.++........+++..+. ++..++.+. ++..+++ ...+||||||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~---l~~~~~~----~~~~LS~G~~ 154 (252)
T PRK14272 82 AMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDE---VKDRLKT----PATGLSGGQQ 154 (252)
T ss_pred HhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchh---hhhhhcC----CcccCCHHHH
Confidence 778899999999999984 999999875421111123333332 233333222 2333343 4568999999
Q ss_pred HHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhh-cCEEEEEeCCeEEEecChhHH
Q psy5743 548 QRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHL 626 (644)
Q Consensus 548 QRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~-aD~Iivl~~G~ive~Gt~~eL 626 (644)
||++||||++++|++|||||||++||..+.+.+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 155 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14272 155 QRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQL 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999999875 999999999999999999999
Q ss_pred hcCCCcHH
Q psy5743 627 IKNPNSMF 634 (644)
Q Consensus 627 l~~~~~~y 634 (644)
++.+...+
T Consensus 235 ~~~~~~~~ 242 (252)
T PRK14272 235 FTNPRDER 242 (252)
T ss_pred HhCcCcHH
Confidence 87544444
No 184
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=1.8e-45 Score=364.90 Aligned_cols=204 Identities=30% Similarity=0.532 Sum_probs=173.2
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCCh---HHHhc
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDP---MYLRS 476 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~---~~lr~ 476 (644)
|+++|++++|++. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+. ..+|+
T Consensus 1 l~~~~l~~~~~~~--~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (214)
T cd03292 1 IEFINVTKTYPNG--TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRR 78 (214)
T ss_pred CEEEEEEEEeCCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHH
Confidence 4789999999642 469999999999999999999999999999999999999999999999999988764 34788
Q ss_pred ceEEEecCCCCCc-ccHHHHHhcCCCCCCCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHH
Q psy5743 477 QIGSVSQEPTLFS-GTIYENILYGVNDSSSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIA 551 (644)
Q Consensus 477 ~i~~V~Q~~~Lf~-gTIreNI~~g~~~~~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRia 551 (644)
.++||+|++.+|. .|++||+.++.... ..+ ++++.++++..++.+... ....+||||||||++
T Consensus 79 ~i~~v~q~~~~~~~~t~~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~ 146 (214)
T cd03292 79 KIGVVFQDFRLLPDRNVYENVAFALEVT-GVPPREIRKRVPAALELVGLSHKHR-----------ALPAELSGGEQQRVA 146 (214)
T ss_pred heEEEecCchhccCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCHHHhh-----------CChhhcCHHHHHHHH
Confidence 9999999999998 49999999863210 112 234555566555543322 233589999999999
Q ss_pred HHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhh-cCEEEEEeCCeE
Q psy5743 552 IARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIRK-SNQICVLDKGKI 617 (644)
Q Consensus 552 LARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~~-aD~Iivl~~G~i 617 (644)
||||++++|+++|||||||+||+++.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++
T Consensus 147 laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 147 IARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 9999999999999999999999999999999998874 47999999999999875 899999999974
No 185
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=4.3e-45 Score=383.07 Aligned_cols=231 Identities=24% Similarity=0.400 Sum_probs=188.4
Q ss_pred cEEEEEEEEEcCCC-CCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCC---CcEEEECCccCCCCChHHH
Q psy5743 399 EIDFNNIRFSYPSR-PDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQ---NGKILIDGVDIKELDPMYL 474 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~-~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~---~G~I~idg~~i~~~~~~~l 474 (644)
-++++|++++|+.. ....+++|+||+|++||++||+|+||||||||+++|+|+++|+ +|+|.+||.|+..++..++
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 48999999999632 2346999999999999999999999999999999999999996 9999999999999988776
Q ss_pred h----cceEEEecCCC--CCc-ccHHHHHhcCCCCCCCCCHH----HHHHHHHHHhhccchhhhhcCccccccCCCCCCC
Q psy5743 475 R----SQIGSVSQEPT--LFS-GTIYENILYGVNDSSSVTKS----DIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLS 543 (644)
Q Consensus 475 r----~~i~~V~Q~~~--Lf~-gTIreNI~~g~~~~~~~~~~----~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LS 543 (644)
+ +.|+||+|+|. ++. -|+.+|+..........+.+ ++.+.++.++ ||++++ .++.....||
T Consensus 92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vg-------L~~~~~-~~~~~p~~LS 163 (330)
T PRK09473 92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVK-------MPEARK-RMKMYPHEFS 163 (330)
T ss_pred HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC-------CCChHH-HhcCCcccCC
Confidence 4 47999999983 443 47777765321000012333 2333444433 343332 3567788999
Q ss_pred hhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEEEeCCeEEEe
Q psy5743 544 GGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIR-KSNQICVLDKGKIVEI 620 (644)
Q Consensus 544 GGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~ 620 (644)
||||||++|||||+.+|++||+|||||+||..+...+.+.|.++.+ +.|+|+|||+++.+. .||+|+||.+|+|+|.
T Consensus 164 gG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~ 243 (330)
T PRK09473 164 GGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEY 243 (330)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999988754 789999999999986 6999999999999999
Q ss_pred cChhHHhcCCCcHHHHH
Q psy5743 621 GSYAHLIKNPNSMFNKL 637 (644)
Q Consensus 621 Gt~~eLl~~~~~~y~~l 637 (644)
|+.+++.+++...|.+.
T Consensus 244 g~~~~i~~~p~~pyt~~ 260 (330)
T PRK09473 244 GNARDVFYQPSHPYSIG 260 (330)
T ss_pred CCHHHHHhCCCCHHHHH
Confidence 99999998655566653
No 186
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.4e-45 Score=372.03 Aligned_cols=222 Identities=30% Similarity=0.510 Sum_probs=189.7
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCC-----CCCcEEEECCccCC--CCCh
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD-----PQNGKILIDGVDIK--ELDP 471 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~-----p~~G~I~idg~~i~--~~~~ 471 (644)
-|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++. ..+.
T Consensus 10 ~l~i~~v~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 86 (264)
T PRK14243 10 VLRTENLNVYYGS---FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP 86 (264)
T ss_pred EEEEeeeEEEECC---EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccCh
Confidence 4899999999963 469999999999999999999999999999999999986 47999999999985 3456
Q ss_pred HHHhcceEEEecCCCCCcccHHHHHhcCCCCCC--CCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHH
Q psy5743 472 MYLRSQIGSVSQEPTLFSGTIYENILYGVNDSS--SVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQR 549 (644)
Q Consensus 472 ~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~--~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQR 549 (644)
..+|+.++||+|++.+|+.|++||+.++..... ...++++.++++.+++.+++.. .......+||||||||
T Consensus 87 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LSgGq~qr 159 (264)
T PRK14243 87 VEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKD-------KLKQSGLSLSGGQQQR 159 (264)
T ss_pred HHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHH-------HhcCCcccCCHHHHHH
Confidence 778889999999999999999999998643100 0123445556677766544432 2456677899999999
Q ss_pred HHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHH-hhcCEEEEEe---------CCeEEE
Q psy5743 550 IAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTI-RKSNQICVLD---------KGKIVE 619 (644)
Q Consensus 550 iaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i-~~aD~Iivl~---------~G~ive 619 (644)
++||||++++|++|||||||++||+.+...+.+.|.++.+++|+|+|||+++.+ ..||+|++|+ +|++++
T Consensus 160 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~ 239 (264)
T PRK14243 160 LCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVE 239 (264)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEE
Confidence 999999999999999999999999999999999999987778999999999986 5689999998 899999
Q ss_pred ecChhHHhcCC
Q psy5743 620 IGSYAHLIKNP 630 (644)
Q Consensus 620 ~Gt~~eLl~~~ 630 (644)
.|+++|+.+.+
T Consensus 240 ~~~~~~~~~~~ 250 (264)
T PRK14243 240 FDRTEKIFNSP 250 (264)
T ss_pred eCCHHHHHhCC
Confidence 99999998653
No 187
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5e-45 Score=382.08 Aligned_cols=229 Identities=29% Similarity=0.445 Sum_probs=189.1
Q ss_pred cEEEEEEEEEcCCCC-------CCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCCh
Q psy5743 399 EIDFNNIRFSYPSRP-------DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDP 471 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~-------~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~ 471 (644)
-|+++|++++|+... ...+|+||||+|++||++||||+||||||||+++|+|+++|++|+|.++|.|+..++.
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 389999999997321 2468999999999999999999999999999999999999999999999999998875
Q ss_pred H---HHhcceEEEecCCC--CCc-ccHHHHHhcCC---CC-CCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCC
Q psy5743 472 M---YLRSQIGSVSQEPT--LFS-GTIYENILYGV---ND-SSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIM 541 (644)
Q Consensus 472 ~---~lr~~i~~V~Q~~~--Lf~-gTIreNI~~g~---~~-~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~ 541 (644)
. .+|++|+||+|+|. |+. -|+.+|+.... .. ......+++.++++.+++.+ .+++.. ...
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~------~~~~~~----p~~ 154 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRP------EHYDRY----PHM 154 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCCh------HHhcCC----Ccc
Confidence 4 56789999999994 554 48999886321 00 00012345666677776632 233433 467
Q ss_pred CChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEEEeCCeEE
Q psy5743 542 LSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIR-KSNQICVLDKGKIV 618 (644)
Q Consensus 542 LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~-~aD~Iivl~~G~iv 618 (644)
||||||||++|||||+.+|++||+|||||+||..+...|.+.|.++.+ +.|+|+|||+++.+. .||+|++|++|+|+
T Consensus 155 LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~iv 234 (327)
T PRK11308 155 FSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCV 234 (327)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999988754 789999999999996 59999999999999
Q ss_pred EecChhHHhcCCCcHHHHH
Q psy5743 619 EIGSYAHLIKNPNSMFNKL 637 (644)
Q Consensus 619 e~Gt~~eLl~~~~~~y~~l 637 (644)
|.|+.+++++++...|.+.
T Consensus 235 e~g~~~~~~~~p~hpyt~~ 253 (327)
T PRK11308 235 EKGTKEQIFNNPRHPYTQA 253 (327)
T ss_pred EECCHHHHhcCCCCHHHHH
Confidence 9999999997655556543
No 188
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.7e-45 Score=371.64 Aligned_cols=222 Identities=34% Similarity=0.491 Sum_probs=189.8
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCC-----CCcEEEECCccCCC--CCh
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDP-----QNGKILIDGVDIKE--LDP 471 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p-----~~G~I~idg~~i~~--~~~ 471 (644)
.|+++|++++|++ +++|+|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.+||+++.. .+.
T Consensus 7 ~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (259)
T PRK14260 7 AIKVKDLSFYYNT---SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRINI 83 (259)
T ss_pred eEEEEEEEEEECC---eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccch
Confidence 5999999999963 4699999999999999999999999999999999999985 48999999999864 455
Q ss_pred HHHhcceEEEecCCCCCcccHHHHHhcCCCCCC---CCC-HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHH
Q psy5743 472 MYLRSQIGSVSQEPTLFSGTIYENILYGVNDSS---SVT-KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQK 547 (644)
Q Consensus 472 ~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~---~~~-~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQk 547 (644)
..+++.++||+|++.+|+.|++||+.++..... ..+ ++.+.++++.+++.+++.. .....+..||||||
T Consensus 84 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~G~~ 156 (259)
T PRK14260 84 NRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKD-------KLNKSALGLSGGQQ 156 (259)
T ss_pred HhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhh-------HhcCCcccCCHHHH
Confidence 678889999999999999999999987532100 011 2345667777777655432 23456778999999
Q ss_pred HHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh-hcCEEEEEe-----CCeEEEec
Q psy5743 548 QRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIR-KSNQICVLD-----KGKIVEIG 621 (644)
Q Consensus 548 QRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~-~aD~Iivl~-----~G~ive~G 621 (644)
||++||||++++|+++||||||++||+.+...+.+.|.++.+++|+|+|||+++.+. .||++++|+ +|++++.|
T Consensus 157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~ 236 (259)
T PRK14260 157 QRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFG 236 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEeC
Confidence 999999999999999999999999999999999999999877899999999999985 599999998 59999999
Q ss_pred ChhHHhcCC
Q psy5743 622 SYAHLIKNP 630 (644)
Q Consensus 622 t~~eLl~~~ 630 (644)
+++++.+.+
T Consensus 237 ~~~~~~~~~ 245 (259)
T PRK14260 237 VTTQIFSNP 245 (259)
T ss_pred CHHHHhcCC
Confidence 999997643
No 189
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=2.6e-45 Score=366.24 Aligned_cols=213 Identities=31% Similarity=0.500 Sum_probs=182.8
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
-|+++|++++|++ .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..+++..+++.+
T Consensus 7 ~i~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (225)
T PRK10247 7 LLQLQNVGYLAGD---AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQV 83 (225)
T ss_pred eEEEeccEEeeCC---ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhcc
Confidence 4899999999963 4699999999999999999999999999999999999999999999999999998888889999
Q ss_pred EEEecCCCCCcccHHHHHhcCCCCC-CCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHc
Q psy5743 479 GSVSQEPTLFSGTIYENILYGVNDS-SSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALI 557 (644)
Q Consensus 479 ~~V~Q~~~Lf~gTIreNI~~g~~~~-~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll 557 (644)
+|++|++.+|+.|++||+.++..-. ...+++++.++++..++. ++........||||||||++||||++
T Consensus 84 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~----------~~~~~~~~~~LS~G~~qrv~laral~ 153 (225)
T PRK10247 84 SYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALP----------DTILTKNIAELSGGEKQRISLIRNLQ 153 (225)
T ss_pred EEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCC----------hHHhcCCcccCCHHHHHHHHHHHHHh
Confidence 9999999999999999998742100 011233344444444432 13345667789999999999999999
Q ss_pred cCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHhhcCEEEEEe-CCeEEEecChh
Q psy5743 558 KKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIRKSNQICVLD-KGKIVEIGSYA 624 (644)
Q Consensus 558 ~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~~aD~Iivl~-~G~ive~Gt~~ 624 (644)
++|+++||||||++||+.+.+.+.+.|.++.+ ++|+|+|||+++.++.||+|++|+ ++..+++|+|+
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 154 FMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 99999999999999999999999999998753 789999999999999999999995 66778899995
No 190
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.3e-45 Score=372.11 Aligned_cols=223 Identities=30% Similarity=0.495 Sum_probs=191.4
Q ss_pred CccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCC-----CCcEEEECCccCC----
Q psy5743 397 KGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDP-----QNGKILIDGVDIK---- 467 (644)
Q Consensus 397 ~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p-----~~G~I~idg~~i~---- 467 (644)
.+.|+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+.+| ++|+|.++|.++.
T Consensus 14 ~~~l~~~~l~~~~~~---~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~ 90 (265)
T PRK14252 14 QQKSEVNKLNFYYGG---YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSP 90 (265)
T ss_pred CceEEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccc
Confidence 456999999999963 4699999999999999999999999999999999999975 7999999998875
Q ss_pred CCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCC----CCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCC
Q psy5743 468 ELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDS----SSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLS 543 (644)
Q Consensus 468 ~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~----~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LS 543 (644)
..+...+|+.++|++|++.+|.+|++|||.++.... ....++++.++++.+++.+. +.+........||
T Consensus 91 ~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------l~~~~~~~~~~LS 163 (265)
T PRK14252 91 EVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDE-------VKDRLGDLAFNLS 163 (265)
T ss_pred ccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchh-------hhHHHhCCcccCC
Confidence 334567888999999999999999999998763110 01124566667777665433 2344566678999
Q ss_pred hhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh-hcCEEEEEeCCeEEEecC
Q psy5743 544 GGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGS 622 (644)
Q Consensus 544 GGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt 622 (644)
||||||++||||++++|+++||||||++||.++...+.+.|+++.+++|+|+|||+++.+. .||+|++|++|++++.|+
T Consensus 164 ~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~ 243 (265)
T PRK14252 164 GGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGA 243 (265)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999999999999877789999999999985 699999999999999999
Q ss_pred hhHHhcC
Q psy5743 623 YAHLIKN 629 (644)
Q Consensus 623 ~~eLl~~ 629 (644)
++++..+
T Consensus 244 ~~~~~~~ 250 (265)
T PRK14252 244 TDTIFIK 250 (265)
T ss_pred HHHHHhC
Confidence 9998754
No 191
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.8e-45 Score=366.93 Aligned_cols=218 Identities=26% Similarity=0.387 Sum_probs=181.8
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHH-Hhcc
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMY-LRSQ 477 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~-lr~~ 477 (644)
-|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++... +++.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 81 (237)
T PRK11614 5 MLSFDKVSAHYGK---IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREA 81 (237)
T ss_pred EEEEEeEEEeeCC---ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhC
Confidence 3899999999963 46999999999999999999999999999999999999999999999999998887654 5778
Q ss_pred eEEEecCCCCCcc-cHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHH
Q psy5743 478 IGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARAL 556 (644)
Q Consensus 478 i~~V~Q~~~Lf~g-TIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAl 556 (644)
++|++|++.+|.+ |++||+.++... .+.++..+.++ +.+..++...++ .......||||||||++||||+
T Consensus 82 i~~~~q~~~~~~~~tv~~~l~~~~~~---~~~~~~~~~~~-----~~l~~~~~l~~~-~~~~~~~LS~G~~qrl~la~al 152 (237)
T PRK11614 82 VAIVPEGRRVFSRMTVEENLAMGGFF---AERDQFQERIK-----WVYELFPRLHER-RIQRAGTMSGGEQQMLAIGRAL 152 (237)
T ss_pred EEEeccCcccCCCCcHHHHHHHhhhc---cChhHHHHHHH-----HHHHHHHHHHHH-HhCchhhCCHHHHHHHHHHHHH
Confidence 9999999999985 999999986432 12222222111 111222211111 2335678999999999999999
Q ss_pred ccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhHHhc
Q psy5743 557 IKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHLIK 628 (644)
Q Consensus 557 l~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~eLl~ 628 (644)
+++|+|+||||||++||+++.+.+.+.|.++. +++|+|++||+++.+ +.||+|++|++|++++.|+++++..
T Consensus 153 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 153 MSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226 (237)
T ss_pred HhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence 99999999999999999999999999998875 479999999999865 6799999999999999999999975
No 192
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6e-45 Score=377.22 Aligned_cols=221 Identities=30% Similarity=0.482 Sum_probs=183.0
Q ss_pred ccEEEEEEEEEcCCCC--CCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCC----C-C
Q psy5743 398 GEIDFNNIRFSYPSRP--DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKE----L-D 470 (644)
Q Consensus 398 ~~I~~~~vsf~Y~~~~--~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~----~-~ 470 (644)
+.|+++|++++|++.. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. . +
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 5699999999997432 1359999999999999999999999999999999999999999999999999852 2 4
Q ss_pred hHHHhcceEEEecCC--CCCcccHHHHHhcCCCCCCCCCHHHHH----HHHHHHhhccchhhhhcCccccccCCCCCCCh
Q psy5743 471 PMYLRSQIGSVSQEP--TLFSGTIYENILYGVNDSSSVTKSDII----HAAKEANAYGFVIDFKNGFDTIVGERGIMLSG 544 (644)
Q Consensus 471 ~~~lr~~i~~V~Q~~--~Lf~gTIreNI~~g~~~~~~~~~~~i~----~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSG 544 (644)
...+|+.++||+|++ .+|..|++|||.++... ...+.++.. ++++..+ +|.+ ........|||
T Consensus 85 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~-~~~~~~~~~~~~~~ll~~~~-------L~~~---~~~~~~~~LS~ 153 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVN-LGENKQEAYKKVPELLKLVQ-------LPED---YVKRSPFELSG 153 (289)
T ss_pred HHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHcC-------CChh---HhcCChhhCCH
Confidence 567888999999998 57889999999986421 112333322 2222222 2222 23455678999
Q ss_pred hHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHH-hhcCEEEEEeCCeEEEec
Q psy5743 545 GQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIG 621 (644)
Q Consensus 545 GQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~G 621 (644)
|||||++|||||+.+|++|||||||++||+.+.+.+.+.|.++.+ ++|+|+|||+++.+ +.||+|++|++|++++.|
T Consensus 154 Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g 233 (289)
T PRK13645 154 GQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIG 233 (289)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999988753 78999999999987 569999999999999999
Q ss_pred ChhHHhcC
Q psy5743 622 SYAHLIKN 629 (644)
Q Consensus 622 t~~eLl~~ 629 (644)
+++++.+.
T Consensus 234 ~~~~~~~~ 241 (289)
T PRK13645 234 SPFEIFSN 241 (289)
T ss_pred CHHHHhcC
Confidence 99988653
No 193
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=5.5e-45 Score=369.83 Aligned_cols=205 Identities=32% Similarity=0.443 Sum_probs=179.3
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+++.+
T Consensus 12 ~l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~i 83 (257)
T PRK11247 12 PLLLNAVSKRYGE---RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EAREDT 83 (257)
T ss_pred cEEEEEEEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCce
Confidence 5999999999963 46999999999999999999999999999999999999999999999998763 467889
Q ss_pred EEEecCCCCCc-ccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHc
Q psy5743 479 GSVSQEPTLFS-GTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALI 557 (644)
Q Consensus 479 ~~V~Q~~~Lf~-gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll 557 (644)
+|++|++.+|. .|++||+.++... ..++++.++++..++.++ .......||||||||++|||||+
T Consensus 84 ~~v~q~~~l~~~~tv~enl~~~~~~---~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgGqkqrl~laraL~ 149 (257)
T PRK11247 84 RLMFQDARLLPWKKVIDNVGLGLKG---QWRDAALQALAAVGLADR-----------ANEWPAALSGGQKQRVALARALI 149 (257)
T ss_pred EEEecCccCCCCCcHHHHHHhcccc---hHHHHHHHHHHHcCChhH-----------hcCChhhCCHHHHHHHHHHHHHh
Confidence 99999999998 6999999986421 235566777777766443 33445789999999999999999
Q ss_pred cCCCEEEeecccCCCCHHHHHHHHHHHHHHc--CCceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhH
Q psy5743 558 KKSKILLLDEATSALDAENEYLVQSAIEKLI--EGKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAH 625 (644)
Q Consensus 558 ~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~--~~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~e 625 (644)
++|+++||||||++||+.+...+.+.|.++. .++|+|+|||+++.+ ..||+|++|++|++++.|+.+.
T Consensus 150 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~~ 220 (257)
T PRK11247 150 HRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVDL 220 (257)
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeccccc
Confidence 9999999999999999999999999998864 378999999999987 5699999999999999988653
No 194
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4e-45 Score=366.75 Aligned_cols=214 Identities=35% Similarity=0.549 Sum_probs=185.8
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
|+++|++++|++ +++++|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|+++...+. .++.++
T Consensus 1 l~~~~l~~~~~~---~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~--~~~~i~ 75 (232)
T cd03300 1 IELENVSKFYGG---FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP--HKRPVN 75 (232)
T ss_pred CEEEeEEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcceE
Confidence 578999999964 469999999999999999999999999999999999999999999999999987664 367899
Q ss_pred EEecCCCCCcc-cHHHHHhcCCCCC---CCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHH
Q psy5743 480 SVSQEPTLFSG-TIYENILYGVNDS---SSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARA 555 (644)
Q Consensus 480 ~V~Q~~~Lf~g-TIreNI~~g~~~~---~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARA 555 (644)
||+|++.+|.+ |++||+.++.... ....++++.++++..++.++..+.| ..||||||||++||||
T Consensus 76 ~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~lS~G~~qrl~lara 144 (232)
T cd03300 76 TVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKP-----------SQLSGGQQQRVAIARA 144 (232)
T ss_pred EEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCCh-----------hhCCHHHHHHHHHHHH
Confidence 99999999975 9999998753210 0112445666777777766555444 5899999999999999
Q ss_pred HccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHHhcC
Q psy5743 556 LIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHLIKN 629 (644)
Q Consensus 556 ll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eLl~~ 629 (644)
++++|+++||||||++||..+.+.+.+.|.++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 145 l~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~ 221 (232)
T cd03300 145 LVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEE 221 (232)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhC
Confidence 9999999999999999999999999999988754 789999999999975 5899999999999999999999865
No 195
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.2e-45 Score=360.77 Aligned_cols=204 Identities=32% Similarity=0.525 Sum_probs=175.2
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
|+++|++++|++ .. .|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++
T Consensus 1 i~~~~l~~~~~~---~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 73 (211)
T cd03298 1 VRLDKIRFSYGE---QP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVS 73 (211)
T ss_pred CEEEeEEEEeCC---Ee--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEE
Confidence 578999999964 22 39999999999999999999999999999999999999999999999987654 367899
Q ss_pred EEecCCCCCcc-cHHHHHhcCCCCC---CCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHH
Q psy5743 480 SVSQEPTLFSG-TIYENILYGVNDS---SSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARA 555 (644)
Q Consensus 480 ~V~Q~~~Lf~g-TIreNI~~g~~~~---~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARA 555 (644)
|++|++.+|.+ |++||+.++.... ...+++++.++++..++.++..+.| ..||||||||++||||
T Consensus 74 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~ia~a 142 (211)
T cd03298 74 MLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLP-----------GELSGGERQRVALARV 142 (211)
T ss_pred EEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCc-----------ccCCHHHHHHHHHHHH
Confidence 99999999985 9999998764210 0123456777788777765544433 4799999999999999
Q ss_pred HccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHhh-cCEEEEEeCCeEEEec
Q psy5743 556 LIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIG 621 (644)
Q Consensus 556 ll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~~-aD~Iivl~~G~ive~G 621 (644)
++++|+++||||||++||.++...+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 143 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 143 LVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 9999999999999999999999999999998753 7899999999999855 9999999999998765
No 196
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.2e-45 Score=374.34 Aligned_cols=215 Identities=30% Similarity=0.480 Sum_probs=182.1
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCC--CCChHHHhcc
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIK--ELDPMYLRSQ 477 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~--~~~~~~lr~~ 477 (644)
|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++. ..+...+|++
T Consensus 2 l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (271)
T PRK13638 2 LATSDLWFRYQD---EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQ 78 (271)
T ss_pred eEEEEEEEEcCC---cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhh
Confidence 689999999963 46999999999999999999999999999999999999999999999999985 3445678889
Q ss_pred eEEEecCCC--CCcccHHHHHhcCCCCCCCCCHH----HHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHH
Q psy5743 478 IGSVSQEPT--LFSGTIYENILYGVNDSSSVTKS----DIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIA 551 (644)
Q Consensus 478 i~~V~Q~~~--Lf~gTIreNI~~g~~~~~~~~~~----~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRia 551 (644)
++||+|++. +|..|+.||+.++... ...+.+ ++.++++..++.++. ......||||||||++
T Consensus 79 i~~v~q~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgG~~qrl~ 146 (271)
T PRK13638 79 VATVFQDPEQQIFYTDIDSDIAFSLRN-LGVPEAEITRRVDEALTLVDAQHFR-----------HQPIQCLSHGQKKRVA 146 (271)
T ss_pred eEEEeeChhhccccccHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCHhHh-----------cCCchhCCHHHHHHHH
Confidence 999999985 6788999999875221 012222 344455555553321 2345689999999999
Q ss_pred HHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHHhcC
Q psy5743 552 IARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHLIKN 629 (644)
Q Consensus 552 LARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eLl~~ 629 (644)
|||||+.+|++|||||||++||+.+...+.+.|.++. +++|+|+|||+++.+. .||+|++|++|++++.|+++++...
T Consensus 147 laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (271)
T PRK13638 147 IAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC 226 (271)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999998875 4789999999999984 5999999999999999999998754
No 197
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=6.9e-45 Score=364.29 Aligned_cols=211 Identities=25% Similarity=0.347 Sum_probs=178.6
Q ss_pred cEEEEEEEEEcCCCCC-CccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHH---H
Q psy5743 399 EIDFNNIRFSYPSRPD-AVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMY---L 474 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~-~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~---l 474 (644)
-|+++|++++|++... .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... +
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 4899999999974222 36999999999999999999999999999999999999999999999999998887654 2
Q ss_pred -hcceEEEecCCCCCcc-cHHHHHhcCCC--CC-CCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHH
Q psy5743 475 -RSQIGSVSQEPTLFSG-TIYENILYGVN--DS-SSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQR 549 (644)
Q Consensus 475 -r~~i~~V~Q~~~Lf~g-TIreNI~~g~~--~~-~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQR 549 (644)
++.++|++|++.+|.+ |++||+.++.. .. .....+++.++++..++.++..+. ...||||||||
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~Ge~qr 154 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHL-----------PAQLSGGEQQR 154 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCC-----------hhhCCHHHHHH
Confidence 3579999999999885 99999987421 00 011234566667777665444333 35799999999
Q ss_pred HHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHhhcCEEEEEeCCeEEEe
Q psy5743 550 IAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIRKSNQICVLDKGKIVEI 620 (644)
Q Consensus 550 iaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~ 620 (644)
++|||||+++|++|||||||++||+++...+.+.|+++.+ ++|+|+|||+++.+..||+|++|++|++++.
T Consensus 155 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 155 VALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 9999999999999999999999999999999999988743 7899999999999999999999999999864
No 198
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9e-45 Score=366.49 Aligned_cols=220 Identities=25% Similarity=0.460 Sum_probs=184.1
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHH-Hhcce
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMY-LRSQI 478 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~-lr~~i 478 (644)
|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...++.. +|+.+
T Consensus 4 l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (241)
T PRK10895 4 LTAKNLAKAYKG---RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGI 80 (241)
T ss_pred EEEeCcEEEeCC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCe
Confidence 789999999963 46999999999999999999999999999999999999999999999999998887644 57889
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHc
Q psy5743 479 GSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALI 557 (644)
Q Consensus 479 ~~V~Q~~~Lf~g-TIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll 557 (644)
+|++|++.+|.+ |++||+.++..-....+.++..+ .+.++++.+ |++.........||||||||++||||++
T Consensus 81 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral~ 153 (241)
T PRK10895 81 GYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQRED-----RANELMEEF--HIEHLRDSMGQSLSGGERRRVEIARALA 153 (241)
T ss_pred EEeccCCcccccCcHHHHHhhhhhcccccCHHHHHH-----HHHHHHHHc--CCHHHhhcchhhCCHHHHHHHHHHHHHh
Confidence 999999999985 99999987632100122222111 112233333 4555556677899999999999999999
Q ss_pred cCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhHHhcC
Q psy5743 558 KKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHLIKN 629 (644)
Q Consensus 558 ~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~eLl~~ 629 (644)
++|++|||||||++||+.+...+.+.+.++. +++|+|++||+++.+ +.||+|++|++|++++.|+++++++.
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 227 (241)
T PRK10895 154 ANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQD 227 (241)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhcC
Confidence 9999999999999999999999999998765 478999999999766 66999999999999999999998753
No 199
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=6.5e-45 Score=378.68 Aligned_cols=215 Identities=30% Similarity=0.481 Sum_probs=184.0
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
.|+++|++++|++ ..+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.|+...+ ...|++|
T Consensus 7 ~i~i~~l~k~~~~---~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~i 82 (306)
T PRK13537 7 PIDFRNVEKRYGD---KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQRV 82 (306)
T ss_pred eEEEEeEEEEECC---eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhcE
Confidence 5999999999963 46999999999999999999999999999999999999999999999999998754 4578899
Q ss_pred EEEecCCCCCc-ccHHHHHhcCCCCCCCCCHHH----HHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHH
Q psy5743 479 GSVSQEPTLFS-GTIYENILYGVNDSSSVTKSD----IIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIA 553 (644)
Q Consensus 479 ~~V~Q~~~Lf~-gTIreNI~~g~~~~~~~~~~~----i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLA 553 (644)
|||||++.+|. .|++||+.+.... ...+..+ +.++++..++ +...++.++ +||||||||++||
T Consensus 83 g~v~q~~~~~~~~tv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~~~----~LS~G~~qrl~la 150 (306)
T PRK13537 83 GVVPQFDNLDPDFTVRENLLVFGRY-FGLSAAAARALVPPLLEFAKL-------ENKADAKVG----ELSGGMKRRLTLA 150 (306)
T ss_pred EEEeccCcCCCCCcHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHcCC-------chHhcCchh----hCCHHHHHHHHHH
Confidence 99999999986 6999999864321 1123332 3333444333 344566654 7999999999999
Q ss_pred HHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHHhcC
Q psy5743 554 RALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHLIKN 629 (644)
Q Consensus 554 RAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eLl~~ 629 (644)
|||+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 151 ~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 151 RALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred HHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 99999999999999999999999999999999875 4789999999999985 5999999999999999999999753
No 200
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=7.3e-45 Score=365.92 Aligned_cols=213 Identities=33% Similarity=0.483 Sum_probs=181.9
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
|+++|++++|++ +++|+|+||++.+||+++|+||||||||||+++|+|+++|++|+|.+||.++...+. .++.++
T Consensus 1 i~i~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~ 75 (237)
T TIGR00968 1 IEIANISKRFGS---FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIG 75 (237)
T ss_pred CEEEEEEEEECC---eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEE
Confidence 578999999973 469999999999999999999999999999999999999999999999999987653 477899
Q ss_pred EEecCCCCCcc-cHHHHHhcCCCCCCCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHH
Q psy5743 480 SVSQEPTLFSG-TIYENILYGVNDSSSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIAR 554 (644)
Q Consensus 480 ~V~Q~~~Lf~g-TIreNI~~g~~~~~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLAR 554 (644)
|+||++.+|.+ |++||+.++.+.. ..+ ++++.++++..++.++. .....+|||||+||++|||
T Consensus 76 ~~~q~~~~~~~~t~~enl~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~lS~G~~qrl~lar 143 (237)
T TIGR00968 76 FVFQHYALFKHLTVRDNIAFGLEIR-KHPKAKIKARVEELLELVQLEGLG-----------DRYPNQLSGGQRQRVALAR 143 (237)
T ss_pred EEecChhhccCCcHHHHHHhHHHhc-CCCHHHHHHHHHHHHHHcCCHhHh-----------hCChhhCCHHHHHHHHHHH
Confidence 99999999975 9999999864321 111 23344455555443322 2334689999999999999
Q ss_pred HHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHHhcC
Q psy5743 555 ALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHLIKN 629 (644)
Q Consensus 555 All~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eLl~~ 629 (644)
|++++|++++|||||++||.+++..+.+.|.+..+ ++|+|++||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 144 al~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~ 221 (237)
T TIGR00968 144 ALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDH 221 (237)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHcC
Confidence 99999999999999999999999999999998754 689999999999875 5999999999999999999999754
No 201
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-44 Score=369.23 Aligned_cols=215 Identities=27% Similarity=0.436 Sum_probs=186.0
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
|+++|++++|++ +++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 3 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (258)
T PRK13548 3 LEARNLSVRLGG---RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRA 79 (258)
T ss_pred EEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheE
Confidence 789999999963 46999999999999999999999999999999999999999999999999999888888888999
Q ss_pred EEecCCCC-CcccHHHHHhcCCCCCCC---CCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHH
Q psy5743 480 SVSQEPTL-FSGTIYENILYGVNDSSS---VTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARA 555 (644)
Q Consensus 480 ~V~Q~~~L-f~gTIreNI~~g~~~~~~---~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARA 555 (644)
|++|++.+ ++.|++||+.++...... ..++++.++++..++.++ .......||||||||++||||
T Consensus 80 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGe~qrv~la~a 148 (258)
T PRK13548 80 VLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHL-----------AGRDYPQLSGGEQQRVQLARV 148 (258)
T ss_pred EEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhH-----------hcCCcccCCHHHHHHHHHHHH
Confidence 99999987 678999999986421100 112345555666555332 233457899999999999999
Q ss_pred Hc------cCCCEEEeecccCCCCHHHHHHHHHHHHHHc--CCceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHH
Q psy5743 556 LI------KKSKILLLDEATSALDAENEYLVQSAIEKLI--EGKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHL 626 (644)
Q Consensus 556 ll------~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~--~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eL 626 (644)
++ .+|++|||||||++||+.+...+.+.|.++. +++|+|+|||+++.+. .||+|++|++|++++.|+++++
T Consensus 149 l~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (258)
T PRK13548 149 LAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEV 228 (258)
T ss_pred HhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHH
Confidence 99 5999999999999999999999999998875 4789999999999886 6999999999999999999998
Q ss_pred hc
Q psy5743 627 IK 628 (644)
Q Consensus 627 l~ 628 (644)
.+
T Consensus 229 ~~ 230 (258)
T PRK13548 229 LT 230 (258)
T ss_pred hC
Confidence 75
No 202
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-44 Score=367.54 Aligned_cols=229 Identities=31% Similarity=0.503 Sum_probs=192.0
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEEC------CccCCCCChH
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILID------GVDIKELDPM 472 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~id------g~~i~~~~~~ 472 (644)
.|+++|++++|++ +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++ |+++..++..
T Consensus 10 ~i~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~ 86 (257)
T PRK14246 10 VFNISRLYLYIND---KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAI 86 (257)
T ss_pred heeeeeEEEecCC---ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHH
Confidence 5999999999963 469999999999999999999999999999999999999999666655 5778777888
Q ss_pred HHhcceEEEecCCCCCcc-cHHHHHhcCCCCCCCCCH----HHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHH
Q psy5743 473 YLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTK----SDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQK 547 (644)
Q Consensus 473 ~lr~~i~~V~Q~~~Lf~g-TIreNI~~g~~~~~~~~~----~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQk 547 (644)
.+|+.++|++|++.+|.+ |++||+.++.......++ +++.++++..++.+++. ......+..||||||
T Consensus 87 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~LS~G~~ 159 (257)
T PRK14246 87 KLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVY-------DRLNSPASQLSGGQQ 159 (257)
T ss_pred HHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccch-------hhhcCCcccCCHHHH
Confidence 899999999999999976 999999976321101122 23455666666654331 123456778999999
Q ss_pred HHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhHH
Q psy5743 548 QRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHL 626 (644)
Q Consensus 548 QRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~eL 626 (644)
||++||||++++|++++|||||++||..+++.+.+.|.++.+++|+|+|||+++.+ ..||++++|++|++++.|+++++
T Consensus 160 qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~ 239 (257)
T PRK14246 160 QRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEI 239 (257)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999999999999999887789999999999998 66999999999999999999999
Q ss_pred hcCCCcHHHHH
Q psy5743 627 IKNPNSMFNKL 637 (644)
Q Consensus 627 l~~~~~~y~~l 637 (644)
.+.+...|.+.
T Consensus 240 ~~~~~~~~~~~ 250 (257)
T PRK14246 240 FTSPKNELTEK 250 (257)
T ss_pred HhCCCcHHHHH
Confidence 87644445443
No 203
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-44 Score=366.17 Aligned_cols=225 Identities=32% Similarity=0.519 Sum_probs=191.2
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCC-----CCCcEEEECCccCCCC--ChH
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD-----PQNGKILIDGVDIKEL--DPM 472 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~-----p~~G~I~idg~~i~~~--~~~ 472 (644)
|+++||+++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.+||.++... +..
T Consensus 4 l~~~~v~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~ 80 (250)
T PRK14266 4 IEVENLNTYFDD---AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVV 80 (250)
T ss_pred EEEEeEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHH
Confidence 789999999963 469999999999999999999999999999999999874 4899999999998753 456
Q ss_pred HHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHH
Q psy5743 473 YLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQ 548 (644)
Q Consensus 473 ~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQ 548 (644)
.+|+.++|++|++.+|++|++||+.++.......+ ++++.++++.+++.+++..+ ....+..|||||||
T Consensus 81 ~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~-------~~~~~~~LS~Gq~q 153 (250)
T PRK14266 81 ELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDK-------LDKSALGLSGGQQQ 153 (250)
T ss_pred HHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHH-------HhCCcccCCHHHHH
Confidence 78899999999999999999999997632111112 24456667777776655422 34567789999999
Q ss_pred HHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhh-cCEEEEEeCCeEEEecChhHHh
Q psy5743 549 RIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLI 627 (644)
Q Consensus 549 RiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~-aD~Iivl~~G~ive~Gt~~eLl 627 (644)
|++||||++++|++|+|||||++||..+...+.+.|.+..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 154 rv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14266 154 RLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIF 233 (250)
T ss_pred HHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHHH
Confidence 999999999999999999999999999999999999998778999999999998755 8899999999999999999997
Q ss_pred cCCCcHH
Q psy5743 628 KNPNSMF 634 (644)
Q Consensus 628 ~~~~~~y 634 (644)
..+.+.+
T Consensus 234 ~~~~~~~ 240 (250)
T PRK14266 234 INPKDKR 240 (250)
T ss_pred hCCCChH
Confidence 6544443
No 204
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-44 Score=368.55 Aligned_cols=227 Identities=30% Similarity=0.462 Sum_probs=194.0
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCC-----CCcEEEECCccCCCC--Ch
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDP-----QNGKILIDGVDIKEL--DP 471 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p-----~~G~I~idg~~i~~~--~~ 471 (644)
.+.+++++++|.+ .++|+|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.+||.++... +.
T Consensus 8 ~~~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 84 (261)
T PRK14263 8 VMDCKLDKIFYGN---FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDP 84 (261)
T ss_pred eEEEEeEEEEeCC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccch
Confidence 4889999999953 4699999999999999999999999999999999999987 799999999998653 44
Q ss_pred HHHhcceEEEecCCCCCcccHHHHHhcCCCCC--CCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHH
Q psy5743 472 MYLRSQIGSVSQEPTLFSGTIYENILYGVNDS--SSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQR 549 (644)
Q Consensus 472 ~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~--~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQR 549 (644)
..+|+.++|++|++.+|..|++|||.++.... .....+++.++++.+++.+.+.. ..++...+|||||+||
T Consensus 85 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~LS~G~~qr 157 (261)
T PRK14263 85 VVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKD-------KLKVSGLSLSGGQQQR 157 (261)
T ss_pred HhhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhh-------hhhCCcccCCHHHHHH
Confidence 56788999999999999999999999874210 01124567788888887655433 2346778999999999
Q ss_pred HHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh-hcCEEEEEe--------CCeEEEe
Q psy5743 550 IAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIR-KSNQICVLD--------KGKIVEI 620 (644)
Q Consensus 550 iaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~-~aD~Iivl~--------~G~ive~ 620 (644)
++||||++++|++|||||||++||+.+...+.+.|.++.+++|+|+|||+++.+. .||+|++|+ +|++++.
T Consensus 158 v~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~ 237 (261)
T PRK14263 158 LCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEM 237 (261)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEe
Confidence 9999999999999999999999999999999999999877889999999999875 599999996 8999999
Q ss_pred cChhHHhcCCCcHHH
Q psy5743 621 GSYAHLIKNPNSMFN 635 (644)
Q Consensus 621 Gt~~eLl~~~~~~y~ 635 (644)
|+++++++.+...+.
T Consensus 238 g~~~~~~~~~~~~~~ 252 (261)
T PRK14263 238 GPTAQIFQNPREQLT 252 (261)
T ss_pred CCHHHHHhCCCcHHH
Confidence 999999865333343
No 205
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.6e-45 Score=374.04 Aligned_cols=216 Identities=30% Similarity=0.532 Sum_probs=183.6
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCC--CChHHHhcc
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKE--LDPMYLRSQ 477 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~--~~~~~lr~~ 477 (644)
|+++||+++|++ ..++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .+...+++.
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (275)
T PRK13639 2 LETRDLKYSYPD--GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKT 79 (275)
T ss_pred EEEEEEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhh
Confidence 689999999963 3469999999999999999999999999999999999999999999999999852 334568899
Q ss_pred eEEEecCC--CCCcccHHHHHhcCCCCCCCCCH----HHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHH
Q psy5743 478 IGSVSQEP--TLFSGTIYENILYGVNDSSSVTK----SDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIA 551 (644)
Q Consensus 478 i~~V~Q~~--~Lf~gTIreNI~~g~~~~~~~~~----~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRia 551 (644)
|+|++|++ .+|+.|++|||.++.... ..+. +++.++++..++.++. + .....|||||+||++
T Consensus 80 i~~v~q~~~~~~~~~tv~e~i~~~~~~~-~~~~~~~~~~~~~~l~~~~L~~~~-------~----~~~~~LS~Gq~qrv~ 147 (275)
T PRK13639 80 VGIVFQNPDDQLFAPTVEEDVAFGPLNL-GLSKEEVEKRVKEALKAVGMEGFE-------N----KPPHHLSGGQKKRVA 147 (275)
T ss_pred eEEEeeChhhhhccccHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHCCCchhh-------c----CChhhCCHHHHHHHH
Confidence 99999997 588999999999863211 1222 3455556665554321 2 234579999999999
Q ss_pred HHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC-CceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHHhcC
Q psy5743 552 IARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE-GKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHLIKN 629 (644)
Q Consensus 552 LARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~-~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eLl~~ 629 (644)
||||++.+|+++||||||++||+.+...+.+.|.++.+ ++|+|+|||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 148 laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 227 (275)
T PRK13639 148 IAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD 227 (275)
T ss_pred HHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999999998753 789999999999986 5999999999999999999998753
No 206
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-44 Score=369.70 Aligned_cols=221 Identities=32% Similarity=0.507 Sum_probs=186.8
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCC-----CCcEEEECCccCCC--CCh
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDP-----QNGKILIDGVDIKE--LDP 471 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p-----~~G~I~idg~~i~~--~~~ 471 (644)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.+||.++.. .+.
T Consensus 4 ~l~i~~v~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~ 80 (258)
T PRK14241 4 RIDVKDLNIYYGS---FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDP 80 (258)
T ss_pred cEEEeeEEEEECC---EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccCh
Confidence 4899999999964 3699999999999999999999999999999999999974 69999999999853 456
Q ss_pred HHHhcceEEEecCCCCCc-ccHHHHHhcCCCCCC----CCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhH
Q psy5743 472 MYLRSQIGSVSQEPTLFS-GTIYENILYGVNDSS----SVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQ 546 (644)
Q Consensus 472 ~~lr~~i~~V~Q~~~Lf~-gTIreNI~~g~~~~~----~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQ 546 (644)
..+|+.++||+|++.+|. .|++||+.++..... ...++++.++++..++.+++. ........+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~ 153 (258)
T PRK14241 81 VAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVK-------DRLDKPGGGLSGGQ 153 (258)
T ss_pred HHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------hHhhCCcccCCHHH
Confidence 678899999999999997 599999987532100 011234555666666543322 23345667899999
Q ss_pred HHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHH-hhcCEEEEEe------CCeEEE
Q psy5743 547 KQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTI-RKSNQICVLD------KGKIVE 619 (644)
Q Consensus 547 kQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i-~~aD~Iivl~------~G~ive 619 (644)
|||++||||++++|+++||||||++||+.+...+.+.|.++.+++|+|+|||+++.+ +.||+|++|+ +|+|++
T Consensus 154 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~ 233 (258)
T PRK14241 154 QQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVE 233 (258)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEe
Confidence 999999999999999999999999999999999999999887779999999999987 4699999997 899999
Q ss_pred ecChhHHhcC
Q psy5743 620 IGSYAHLIKN 629 (644)
Q Consensus 620 ~Gt~~eLl~~ 629 (644)
.|++++++..
T Consensus 234 ~~~~~~~~~~ 243 (258)
T PRK14241 234 IDDTEKIFSN 243 (258)
T ss_pred cCCHHHHHhC
Confidence 9999999764
No 207
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=6.1e-45 Score=385.56 Aligned_cols=209 Identities=28% Similarity=0.416 Sum_probs=178.9
Q ss_pred CccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCc----cCCCCChHHHh----cceEEEecCCC
Q psy5743 415 AVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGV----DIKELDPMYLR----SQIGSVSQEPT 486 (644)
Q Consensus 415 ~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~----~i~~~~~~~lr----~~i~~V~Q~~~ 486 (644)
..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|++||. ++..++...+| ++++||+|++.
T Consensus 37 ~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~ 116 (382)
T TIGR03415 37 VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFA 116 (382)
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCc
Confidence 46899999999999999999999999999999999999999999999996 67777766553 57999999999
Q ss_pred CCc-ccHHHHHhcCCCCCCCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCC
Q psy5743 487 LFS-GTIYENILYGVNDSSSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSK 561 (644)
Q Consensus 487 Lf~-gTIreNI~~g~~~~~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~ 561 (644)
+|+ .|++||+.++.... ..+ .+++.++++..++.++.... ..+||||||||++|||||+.+|+
T Consensus 117 l~p~~Tv~eNi~~~~~~~-g~~~~~~~~~a~e~le~vgL~~~~~~~-----------~~~LSgGq~QRV~LARALa~~P~ 184 (382)
T TIGR03415 117 LMPWLTVEENVAFGLEMQ-GMPEAERRKRVDEQLELVGLAQWADKK-----------PGELSGGMQQRVGLARAFAMDAD 184 (382)
T ss_pred CCCCCcHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCchhhcCC-----------hhhCCHHHHHHHHHHHHHhcCCC
Confidence 998 79999999874210 112 34556677777776554333 34799999999999999999999
Q ss_pred EEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhHHhcCCCcHHH
Q psy5743 562 ILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHLIKNPNSMFN 635 (644)
Q Consensus 562 IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~eLl~~~~~~y~ 635 (644)
|||||||||+||+.+.+.+++.|.++.+ ++|+|+|||+++.+ +.||+|++|++|++++.|+++|++.++...|.
T Consensus 185 ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~p~~~~~ 261 (382)
T TIGR03415 185 ILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPANDYV 261 (382)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhCcchHHH
Confidence 9999999999999999999999988754 78999999999986 66999999999999999999999875444444
No 208
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=6.6e-45 Score=348.32 Aligned_cols=172 Identities=44% Similarity=0.750 Sum_probs=162.8
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
|+++|++++|++. ..++++|+||++++||.++|+||||||||||+++|+|+++|++|+|.+||.++.+++...+|+.++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (173)
T cd03246 1 LEVENVSFRYPGA-EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVG 79 (173)
T ss_pred CEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheE
Confidence 5789999999742 356999999999999999999999999999999999999999999999999999999989999999
Q ss_pred EEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccC
Q psy5743 480 SVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKK 559 (644)
Q Consensus 480 ~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~ 559 (644)
|++|++.+|++|++||+ ||||||||++||||++++
T Consensus 80 ~~~q~~~~~~~tv~~~l---------------------------------------------LS~G~~qrv~la~al~~~ 114 (173)
T cd03246 80 YLPQDDELFSGSIAENI---------------------------------------------LSGGQRQRLGLARALYGN 114 (173)
T ss_pred EECCCCccccCcHHHHC---------------------------------------------cCHHHHHHHHHHHHHhcC
Confidence 99999999999999997 999999999999999999
Q ss_pred CCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhhcCEEEEEeCCeE
Q psy5743 560 SKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIRKSNQICVLDKGKI 617 (644)
Q Consensus 560 p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~~aD~Iivl~~G~i 617 (644)
|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+..||+|++|++|++
T Consensus 115 p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 115 PRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred CCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 99999999999999999999999998875 37899999999999999999999999975
No 209
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=2.8e-45 Score=363.27 Aligned_cols=201 Identities=28% Similarity=0.487 Sum_probs=169.5
Q ss_pred EEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEE
Q psy5743 401 DFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGS 480 (644)
Q Consensus 401 ~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~ 480 (644)
+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++. .+|+.++|
T Consensus 1 ~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~ 72 (213)
T cd03235 1 EVEDLTVSYGG---HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGY 72 (213)
T ss_pred CcccceeEECC---EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEE
Confidence 36899999963 46999999999999999999999999999999999999999999999998764 46789999
Q ss_pred EecCCCC---CcccHHHHHhcCCCCCC-------CCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHH
Q psy5743 481 VSQEPTL---FSGTIYENILYGVNDSS-------SVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRI 550 (644)
Q Consensus 481 V~Q~~~L---f~gTIreNI~~g~~~~~-------~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRi 550 (644)
|+|++.+ |+.|++||+.++..... ...++++.++++..++.++.. ....+||||||||+
T Consensus 73 v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv 141 (213)
T cd03235 73 VPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELAD-----------RQIGELSGGQQQRV 141 (213)
T ss_pred eccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHh-----------CCcccCCHHHHHHH
Confidence 9999987 66899999998643100 012345566666666544332 23457999999999
Q ss_pred HHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHh-hcCEEEEEeCCeEEEec
Q psy5743 551 AIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIG 621 (644)
Q Consensus 551 aLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~G 621 (644)
+||||++++|++|||||||++||+++...+.+.|.+.. +++|+|+|||+++.+. .||+|++|++| +++.|
T Consensus 142 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 142 LLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 99999999999999999999999999999999998875 5789999999999985 48999999886 66654
No 210
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=9e-45 Score=369.66 Aligned_cols=215 Identities=27% Similarity=0.418 Sum_probs=185.6
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
|+++|++++|++ +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+...+|+.++
T Consensus 2 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (256)
T TIGR03873 2 LRLSRVSWSAGG---RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVA 78 (256)
T ss_pred ceEEeEEEEECC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheE
Confidence 789999999963 46999999999999999999999999999999999999999999999999999998888888999
Q ss_pred EEecCCC-CCcccHHHHHhcCCCCCC-------CCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHH
Q psy5743 480 SVSQEPT-LFSGTIYENILYGVNDSS-------SVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIA 551 (644)
Q Consensus 480 ~V~Q~~~-Lf~gTIreNI~~g~~~~~-------~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRia 551 (644)
|++|++. .+..|++||+.++..... ..+++++.++++..++.+. .......||||||||++
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrl~ 147 (256)
T TIGR03873 79 LVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHL-----------ADRDMSTLSGGERQRVH 147 (256)
T ss_pred EecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhh-----------hcCCcccCCHHHHHHHH
Confidence 9999985 556899999988632100 0122345556666555332 23345689999999999
Q ss_pred HHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC-CceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhHHhc
Q psy5743 552 IARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE-GKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHLIK 628 (644)
Q Consensus 552 LARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~-~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~eLl~ 628 (644)
||||++.+|+++||||||++||+++...+.+.|+++.+ ++|+|++||+++.+ ..||+|++|++|++++.|+++++..
T Consensus 148 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 148 VARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred HHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 99999999999999999999999999999999988753 68999999999999 5699999999999999999999864
No 211
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-44 Score=362.96 Aligned_cols=212 Identities=28% Similarity=0.459 Sum_probs=183.2
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
|+++||+++|++ .+ .|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+.. ++.++
T Consensus 2 l~~~~l~~~~~~---~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~--~~~i~ 74 (232)
T PRK10771 2 LKLTDITWLYHH---LP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPS--RRPVS 74 (232)
T ss_pred eEEEEEEEEECC---cc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChh--hccEE
Confidence 689999999963 22 399999999999999999999999999999999999999999999998876543 56899
Q ss_pred EEecCCCCCcc-cHHHHHhcCCCCC---CCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHH
Q psy5743 480 SVSQEPTLFSG-TIYENILYGVNDS---SSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARA 555 (644)
Q Consensus 480 ~V~Q~~~Lf~g-TIreNI~~g~~~~---~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARA 555 (644)
|++|++.+|.+ |++||+.++.... ...+++++.++++..++.+++.+.| ..||||||||++||||
T Consensus 75 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~lara 143 (232)
T PRK10771 75 MLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLP-----------GQLSGGQRQRVALARC 143 (232)
T ss_pred EEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCc-----------ccCCHHHHHHHHHHHH
Confidence 99999999985 9999998753110 0123456777888887766554444 4799999999999999
Q ss_pred HccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHHhcC
Q psy5743 556 LIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHLIKN 629 (644)
Q Consensus 556 ll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eLl~~ 629 (644)
++++|+++||||||++||+++.+.+.+.|.++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++...
T Consensus 144 l~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~ 220 (232)
T PRK10771 144 LVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSG 220 (232)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999988753 789999999999885 4999999999999999999999864
No 212
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=9.4e-45 Score=361.75 Aligned_cols=205 Identities=31% Similarity=0.457 Sum_probs=173.6
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHH---Hhc
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMY---LRS 476 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~---lr~ 476 (644)
|+++|++++|++ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++... +|+
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 79 (222)
T PRK10908 2 IRFEHVSKAYLG--GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRR 79 (222)
T ss_pred EEEEeeEEEecC--CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHh
Confidence 789999999953 347999999999999999999999999999999999999999999999999998876543 688
Q ss_pred ceEEEecCCCC-CcccHHHHHhcCCCCCCCCCHH----HHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHH
Q psy5743 477 QIGSVSQEPTL-FSGTIYENILYGVNDSSSVTKS----DIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIA 551 (644)
Q Consensus 477 ~i~~V~Q~~~L-f~gTIreNI~~g~~~~~~~~~~----~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRia 551 (644)
.++|++|++.+ ++.|++||+.++... ...+++ ++.++++..++.++. ......||||||||++
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~ 147 (222)
T PRK10908 80 QIGMIFQDHHLLMDRTVYDNVAIPLII-AGASGDDIRRRVSAALDKVGLLDKA-----------KNFPIQLSGGEQQRVG 147 (222)
T ss_pred heEEEecCccccccccHHHHHHhHHHh-cCCCHHHHHHHHHHHHHHcCChhhh-----------hCCchhCCHHHHHHHH
Confidence 99999999987 567999999986311 012333 344455555544332 2344689999999999
Q ss_pred HHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhh-cCEEEEEeCCeEE
Q psy5743 552 IARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIRK-SNQICVLDKGKIV 618 (644)
Q Consensus 552 LARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~~-aD~Iivl~~G~iv 618 (644)
||||++++|++|||||||++||+++.+.+.+.|.++. +++|+|+|||+++.+.. ||+|++|++|+++
T Consensus 148 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~ 216 (222)
T PRK10908 148 IARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLH 216 (222)
T ss_pred HHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEc
Confidence 9999999999999999999999999999999998874 46899999999999865 8999999999985
No 213
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-44 Score=370.51 Aligned_cols=217 Identities=27% Similarity=0.411 Sum_probs=188.0
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcc
Q psy5743 398 GEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQ 477 (644)
Q Consensus 398 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~ 477 (644)
..|+++||+++|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.
T Consensus 6 ~~l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (265)
T PRK10253 6 ARLRGEQLTLGYGK---YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARR 82 (265)
T ss_pred cEEEEEEEEEEECC---EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhh
Confidence 46999999999973 469999999999999999999999999999999999999999999999999998888888889
Q ss_pred eEEEecCCCCCc-ccHHHHHhcCCCCC-------CCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHH
Q psy5743 478 IGSVSQEPTLFS-GTIYENILYGVNDS-------SSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQR 549 (644)
Q Consensus 478 i~~V~Q~~~Lf~-gTIreNI~~g~~~~-------~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQR 549 (644)
++|++|++.+|. .|++||+.++.... ....++++.++++..++.++ .......||||||||
T Consensus 83 i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~Gq~qr 151 (265)
T PRK10253 83 IGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHL-----------ADQSVDTLSGGQRQR 151 (265)
T ss_pred eEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHH-----------hcCCcccCChHHHHH
Confidence 999999999875 69999998763110 00123355666666665433 234557899999999
Q ss_pred HHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhHH
Q psy5743 550 IAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHL 626 (644)
Q Consensus 550 iaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~eL 626 (644)
++||||++++|+++||||||++||+++...+.+.|.++.+ ++|+|++||+++.+ ..||+|++|++|++++.|+++++
T Consensus 152 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 231 (265)
T PRK10253 152 AWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEI 231 (265)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999988753 78999999999977 55999999999999999999998
Q ss_pred hc
Q psy5743 627 IK 628 (644)
Q Consensus 627 l~ 628 (644)
..
T Consensus 232 ~~ 233 (265)
T PRK10253 232 VT 233 (265)
T ss_pred hh
Confidence 64
No 214
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.2e-45 Score=359.00 Aligned_cols=220 Identities=32% Similarity=0.520 Sum_probs=188.3
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCc---cCCCCChHHHh
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGV---DIKELDPMYLR 475 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~---~i~~~~~~~lr 475 (644)
.|+++|++..|+. .++++|||++|+.||.+|+.||||||||||+++|+|+..|++|.|.+||. |.++. ..-.
T Consensus 2 ~i~i~~~~~~~~~---~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~--~~~~ 76 (345)
T COG1118 2 SIRINNVKKRFGA---FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNL--AVRD 76 (345)
T ss_pred ceeehhhhhhccc---ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhcc--chhh
Confidence 4788999999964 46899999999999999999999999999999999999999999999999 66663 3334
Q ss_pred cceEEEecCCCCCc-ccHHHHHhcCCCCC-----CCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHH
Q psy5743 476 SQIGSVSQEPTLFS-GTIYENILYGVNDS-----SSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQR 549 (644)
Q Consensus 476 ~~i~~V~Q~~~Lf~-gTIreNI~~g~~~~-----~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQR 549 (644)
++||+|.|+.-||. .||++||+||-+-. +...+.++.+.++.+++...-.+.| .+||||||||
T Consensus 77 R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP-----------~QLSGGQrQR 145 (345)
T COG1118 77 RKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYP-----------AQLSGGQRQR 145 (345)
T ss_pred cceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCc-----------hhcChHHHHH
Confidence 67999999999986 89999999997211 1234667777888888876655555 6899999999
Q ss_pred HHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhHH
Q psy5743 550 IAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHL 626 (644)
Q Consensus 550 iaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~eL 626 (644)
+||||||..+|++|+||||.+|||++-.+.+..-|+++.. +.|+++|||+.+.. +.||+|++|++|+|.+.|+++|.
T Consensus 146 VALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev 225 (345)
T COG1118 146 VALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEV 225 (345)
T ss_pred HHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHH
Confidence 9999999999999999999999999988888877766542 78999999998865 78999999999999999999999
Q ss_pred hcCCCcHH
Q psy5743 627 IKNPNSMF 634 (644)
Q Consensus 627 l~~~~~~y 634 (644)
...+...|
T Consensus 226 ~~~P~s~f 233 (345)
T COG1118 226 YDHPASRF 233 (345)
T ss_pred hcCCCccc
Confidence 87655443
No 215
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=2e-44 Score=369.04 Aligned_cols=232 Identities=27% Similarity=0.429 Sum_probs=189.5
Q ss_pred cEEEEEEEEEcCCC------CCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChH
Q psy5743 399 EIDFNNIRFSYPSR------PDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPM 472 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~------~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~ 472 (644)
-|+++||+++|++. .+.++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++...+..
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 38999999999631 134799999999999999999999999999999999999999999999999999866666
Q ss_pred HHhcceEEEecCCC--CCc-ccHHHHHhcCCCCCC----CCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChh
Q psy5743 473 YLRSQIGSVSQEPT--LFS-GTIYENILYGVNDSS----SVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGG 545 (644)
Q Consensus 473 ~lr~~i~~V~Q~~~--Lf~-gTIreNI~~g~~~~~----~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGG 545 (644)
..++.++||+|++. ++. -|+.+|+.+...... ...++++.++++..++.+.. .+ .....||||
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~----~~~~~LS~G 153 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDH------AS----YYPHMLAPG 153 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHH------Hh----cCchhcCHH
Confidence 66778999999985 444 389999875321100 01234566677777763211 12 233589999
Q ss_pred HHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHhh-cCEEEEEeCCeEEEecC
Q psy5743 546 QKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGS 622 (644)
Q Consensus 546 QkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~~-aD~Iivl~~G~ive~Gt 622 (644)
||||++||||++++|++|||||||++||+++.+.+.+.|.++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+
T Consensus 154 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~ 233 (267)
T PRK15112 154 QKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGS 233 (267)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecCC
Confidence 99999999999999999999999999999999999999998753 7899999999999976 99999999999999999
Q ss_pred hhHHhcCC-CcHHHHHHHh
Q psy5743 623 YAHLIKNP-NSMFNKLMKY 640 (644)
Q Consensus 623 ~~eLl~~~-~~~y~~l~~~ 640 (644)
++++...+ ...+++++..
T Consensus 234 ~~~~~~~~~~~~~~~~~~~ 252 (267)
T PRK15112 234 TADVLASPLHELTKRLIAG 252 (267)
T ss_pred HHHHhcCCCCHHHHHHHHh
Confidence 99998653 2456667653
No 216
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-44 Score=368.52 Aligned_cols=223 Identities=24% Similarity=0.412 Sum_probs=184.3
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHh-cc
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLR-SQ 477 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr-~~ 477 (644)
-|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...++ ..
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (255)
T PRK11300 5 LLSVSGLMMRFGG---LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMG 81 (255)
T ss_pred eEEEeeEEEEECC---EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcC
Confidence 4899999999963 4799999999999999999999999999999999999999999999999999988866654 46
Q ss_pred eEEEecCCCCCcc-cHHHHHhcCCCCC------------CCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCCh
Q psy5743 478 IGSVSQEPTLFSG-TIYENILYGVNDS------------SSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSG 544 (644)
Q Consensus 478 i~~V~Q~~~Lf~g-TIreNI~~g~~~~------------~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSG 544 (644)
++|++|++.+|.+ |++|||.++.... ....+++ .+.. ....++++.+ |++........+|||
T Consensus 82 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~l~~~--gl~~~~~~~~~~LS~ 156 (255)
T PRK11300 82 VVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAE-SEAL--DRAATWLERV--GLLEHANRQAGNLAY 156 (255)
T ss_pred eEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccch-hHHH--HHHHHHHHhC--ChhhhhhCChhhCCH
Confidence 9999999999986 9999999863210 0000000 0000 1111223332 555556677789999
Q ss_pred hHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHhh-cCEEEEEeCCeEEEec
Q psy5743 545 GQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIG 621 (644)
Q Consensus 545 GQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~~-aD~Iivl~~G~ive~G 621 (644)
|||||++||||++.+|++|||||||++||+.+.+.+.+.|.++.+ ++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 157 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 236 (255)
T PRK11300 157 GQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANG 236 (255)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecC
Confidence 999999999999999999999999999999999999999988753 6899999999999854 9999999999999999
Q ss_pred ChhHHhcC
Q psy5743 622 SYAHLIKN 629 (644)
Q Consensus 622 t~~eLl~~ 629 (644)
+.+++...
T Consensus 237 ~~~~~~~~ 244 (255)
T PRK11300 237 TPEEIRNN 244 (255)
T ss_pred CHHHHhhC
Confidence 99998653
No 217
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-44 Score=366.74 Aligned_cols=224 Identities=31% Similarity=0.495 Sum_probs=187.8
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCC--C---CCcEEEECCccCCC--CCh
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD--P---QNGKILIDGVDIKE--LDP 471 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~--p---~~G~I~idg~~i~~--~~~ 471 (644)
-|+++||+++|++ +++|+|+||++++||+++|+|+||||||||+++|+|+++ | ++|+|.+||.++.. .+.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14255 5 IITSSDVHLFYGK---FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDV 81 (252)
T ss_pred eEEEEeEEEEECC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccH
Confidence 3899999999963 469999999999999999999999999999999999975 5 59999999999864 345
Q ss_pred HHHhcceEEEecCCCCCcccHHHHHhcCCCCCC----CCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHH
Q psy5743 472 MYLRSQIGSVSQEPTLFSGTIYENILYGVNDSS----SVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQK 547 (644)
Q Consensus 472 ~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~----~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQk 547 (644)
..+++.++|++|++.+|..|++||+.++..... ...++++.++++.+++.+.+ ..........||||||
T Consensus 82 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i-------~~~~~~~~~~LS~Gq~ 154 (252)
T PRK14255 82 VQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEV-------KDHLHESALSLSGGQQ 154 (252)
T ss_pred HHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccch-------hhHHhcCcccCCHHHH
Confidence 577889999999999999999999987531100 01123445556666654333 2234556679999999
Q ss_pred HHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHH
Q psy5743 548 QRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHL 626 (644)
Q Consensus 548 QRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eL 626 (644)
||++||||++++|++|||||||++||.++.+.+.+.|+++.+++|+|+|||+++.+. .||+|++|++|++++.|+..+.
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14255 155 QRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQM 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999998876789999999999985 5999999999999999999998
Q ss_pred hcCCCc
Q psy5743 627 IKNPNS 632 (644)
Q Consensus 627 l~~~~~ 632 (644)
..++..
T Consensus 235 ~~~~~~ 240 (252)
T PRK14255 235 FLNPKE 240 (252)
T ss_pred hcCCCC
Confidence 765433
No 218
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=2.6e-44 Score=366.73 Aligned_cols=228 Identities=25% Similarity=0.385 Sum_probs=184.7
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCcc-----CCCCChHH
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVD-----IKELDPMY 473 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~-----i~~~~~~~ 473 (644)
-|+++|++++|++ +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ +..++...
T Consensus 6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~ 82 (258)
T PRK11701 6 LLSVRGLTKLYGP---RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAE 82 (258)
T ss_pred eEEEeeeEEEcCC---ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHH
Confidence 4899999999964 469999999999999999999999999999999999999999999999999 88777654
Q ss_pred ----HhcceEEEecCCC--CC-cccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCcc-ccccCCCCCCChh
Q psy5743 474 ----LRSQIGSVSQEPT--LF-SGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFD-TIVGERGIMLSGG 545 (644)
Q Consensus 474 ----lr~~i~~V~Q~~~--Lf-~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~-T~ige~G~~LSGG 545 (644)
+++.++||+|++. ++ +.|+.+||.+........+..+..+ ...++++.+ |++ +.....+..||||
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~LS~G 155 (258)
T PRK11701 83 RRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRA-----TAGDWLERV--EIDAARIDDLPTTFSGG 155 (258)
T ss_pred HHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHH-----HHHHHHHHc--CCChhHHhCCCccCCHH
Confidence 3567999999984 33 3588899864210000011122211 122334444 232 3566778899999
Q ss_pred HHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEEEeCCeEEEecC
Q psy5743 546 QKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGS 622 (644)
Q Consensus 546 QkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt 622 (644)
||||++||||++++|++|||||||++||+.+.+.+.+.|+++.+ +.|+|+|||+++.+. .||+|++|++|++++.|+
T Consensus 156 q~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~ 235 (258)
T PRK11701 156 MQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGL 235 (258)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999988654 789999999999997 599999999999999999
Q ss_pred hhHHhcCCCcHHHH
Q psy5743 623 YAHLIKNPNSMFNK 636 (644)
Q Consensus 623 ~~eLl~~~~~~y~~ 636 (644)
++++..++...|.+
T Consensus 236 ~~~~~~~~~~~~~~ 249 (258)
T PRK11701 236 TDQVLDDPQHPYTQ 249 (258)
T ss_pred HHHHhcCCCCHHHH
Confidence 99998654444544
No 219
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-44 Score=371.62 Aligned_cols=218 Identities=27% Similarity=0.496 Sum_probs=182.8
Q ss_pred cEEEEEEEEEcCCCC--CCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCC----ChH
Q psy5743 399 EIDFNNIRFSYPSRP--DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKEL----DPM 472 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~--~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~----~~~ 472 (644)
.|+++|++++|++.. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||+++... +..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999997421 24699999999999999999999999999999999999999999999999998653 345
Q ss_pred HHhcceEEEecCC--CCCcccHHHHHhcCCCCCCCCCHHH----HHHHHHHHhhccchhhhhcCccc-cccCCCCCCChh
Q psy5743 473 YLRSQIGSVSQEP--TLFSGTIYENILYGVNDSSSVTKSD----IIHAAKEANAYGFVIDFKNGFDT-IVGERGIMLSGG 545 (644)
Q Consensus 473 ~lr~~i~~V~Q~~--~Lf~gTIreNI~~g~~~~~~~~~~~----i~~a~~~a~l~~~i~~lp~Gl~T-~ige~G~~LSGG 545 (644)
..|+.++|++|+| .+|+.|++|||.++... ...+.++ +.++++..+ +++ ........||||
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~g-----------L~~~~~~~~~~~LSgG 149 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKN-FGFSEDEAKEKALKWLKKVG-----------LSEDLISKSPFELSGG 149 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHcC-----------CChhHhhCCcccCCHH
Confidence 6788999999998 58889999999876321 0123332 333344443 332 234456789999
Q ss_pred HHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHH-hhcCEEEEEeCCeEEEecCh
Q psy5743 546 QKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSY 623 (644)
Q Consensus 546 QkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~ 623 (644)
||||++|||||+.+|++|||||||++||+.+...+.+.|.++. ++.|+|++||+++.+ +.||+|++|++|++++.|++
T Consensus 150 q~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~ 229 (287)
T PRK13641 150 QMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASP 229 (287)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999998874 478999999999987 56999999999999999999
Q ss_pred hHHhc
Q psy5743 624 AHLIK 628 (644)
Q Consensus 624 ~eLl~ 628 (644)
+++.+
T Consensus 230 ~~~~~ 234 (287)
T PRK13641 230 KEIFS 234 (287)
T ss_pred HHHhc
Confidence 98865
No 220
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=1.9e-44 Score=375.67 Aligned_cols=215 Identities=33% Similarity=0.498 Sum_probs=181.3
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
.|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++... ...+|+.+
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i 79 (303)
T TIGR01288 4 AIDLVGVSKSYGD---KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAI 79 (303)
T ss_pred EEEEEeEEEEeCC---eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcE
Confidence 4899999999963 4699999999999999999999999999999999999999999999999998764 35678899
Q ss_pred EEEecCCCCCc-ccHHHHHhcCCCCCCCCCHHHHH----HHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHH
Q psy5743 479 GSVSQEPTLFS-GTIYENILYGVNDSSSVTKSDII----HAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIA 553 (644)
Q Consensus 479 ~~V~Q~~~Lf~-gTIreNI~~g~~~~~~~~~~~i~----~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLA 553 (644)
+||+|++.+|. .|++||+.+.... ...+.++.. ++++..+ +++.+++.+ ..||||||||++||
T Consensus 80 ~~v~q~~~~~~~~tv~e~l~~~~~~-~~~~~~~~~~~~~~ll~~~~-------l~~~~~~~~----~~LSgG~~qrv~la 147 (303)
T TIGR01288 80 GVVPQFDNLDPEFTVRENLLVFGRY-FGMSTREIEAVIPSLLEFAR-------LESKADVRV----ALLSGGMKRRLTLA 147 (303)
T ss_pred EEEeccccCCcCCcHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHCC-------ChhHhcCch----hhCCHHHHHHHHHH
Confidence 99999999885 6999999853221 012333332 2333333 333444444 57999999999999
Q ss_pred HHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHHhcC
Q psy5743 554 RALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHLIKN 629 (644)
Q Consensus 554 RAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eLl~~ 629 (644)
|||+++|++|||||||++||+.+...+.+.|.++. +++|+|++||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 148 ~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 148 RALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDE 225 (303)
T ss_pred HHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 99999999999999999999999999999998874 4789999999999985 5999999999999999999998753
No 221
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.3e-45 Score=360.44 Aligned_cols=203 Identities=25% Similarity=0.472 Sum_probs=171.8
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
|+++|++++|++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.. .+++.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~ 73 (210)
T cd03269 1 LEVENVTKRFGR---VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIG 73 (210)
T ss_pred CEEEEEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEE
Confidence 578999999963 469999999999999999999999999999999999999999999999998753 5678999
Q ss_pred EEecCCCCCcc-cHHHHHhcCCCCCCCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHH
Q psy5743 480 SVSQEPTLFSG-TIYENILYGVNDSSSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIAR 554 (644)
Q Consensus 480 ~V~Q~~~Lf~g-TIreNI~~g~~~~~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLAR 554 (644)
|++|++.+|.+ |++||+.++.... ..+ ++++.++++..++ +........+||||||||++|||
T Consensus 74 ~~~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~~qrl~la~ 141 (210)
T cd03269 74 YLPEERGLYPKMKVIDQLVYLAQLK-GLKKEEARRRIDEWLERLEL-----------SEYANKRVEELSKGNQQKVQFIA 141 (210)
T ss_pred EeccCCcCCcCCcHHHHHHHHHHHc-CCChHHHHHHHHHHHHHcCC-----------hHHHhCcHhhCCHHHHHHHHHHH
Confidence 99999999975 9999998753210 011 2233444444443 33344556789999999999999
Q ss_pred HHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHh-hcCEEEEEeCCeEEEec
Q psy5743 555 ALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIG 621 (644)
Q Consensus 555 All~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~G 621 (644)
|++.+|+++||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+. .||+|++|++|++++.|
T Consensus 142 al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 142 AVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 9999999999999999999999999999998864 4789999999999885 59999999999998765
No 222
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.5e-44 Score=361.55 Aligned_cols=213 Identities=31% Similarity=0.545 Sum_probs=183.0
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
|+++|++++|++ + +|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+. .++.++
T Consensus 1 l~~~~l~~~~~~---~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~--~~~~i~ 74 (235)
T cd03299 1 LKVENLSKDWKE---F-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP--EKRDIS 74 (235)
T ss_pred CeeEeEEEEeCC---c-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--hHcCEE
Confidence 578999999963 2 7999999999999999999999999999999999999999999999999987655 367899
Q ss_pred EEecCCCCCc-ccHHHHHhcCCCCCC---CCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHH
Q psy5743 480 SVSQEPTLFS-GTIYENILYGVNDSS---SVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARA 555 (644)
Q Consensus 480 ~V~Q~~~Lf~-gTIreNI~~g~~~~~---~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARA 555 (644)
|++|++.+|. .|++||+.++..... ...++++.++++..++.+++.+ ....||||||||++||||
T Consensus 75 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrl~lara 143 (235)
T cd03299 75 YVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNR-----------KPETLSGGEQQRVAIARA 143 (235)
T ss_pred EEeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhc-----------CcccCCHHHHHHHHHHHH
Confidence 9999999995 799999997643210 0123345566666666554433 335799999999999999
Q ss_pred HccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHHhcC
Q psy5743 556 LIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHLIKN 629 (644)
Q Consensus 556 ll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eLl~~ 629 (644)
++++|++++|||||++||..+.+.+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 144 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 220 (235)
T cd03299 144 LVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKK 220 (235)
T ss_pred HHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHhC
Confidence 9999999999999999999999999999988754 799999999999986 4999999999999999999998765
No 223
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-44 Score=373.25 Aligned_cols=221 Identities=31% Similarity=0.484 Sum_probs=189.2
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCC-----CCCcEEEECCccCCCC--Ch
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD-----PQNGKILIDGVDIKEL--DP 471 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~-----p~~G~I~idg~~i~~~--~~ 471 (644)
.|+++|++++|++ .++|+++||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++... +.
T Consensus 45 ~l~i~nl~~~~~~---~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~ 121 (305)
T PRK14264 45 KLSVEDLDVYYGD---DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNL 121 (305)
T ss_pred eEEEEEEEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccH
Confidence 5899999999964 469999999999999999999999999999999999986 6899999999998653 45
Q ss_pred HHHhcceEEEecCCCCCcccHHHHHhcCCCCCC----------------CCCHHHHHHHHHHHhhccchhhhhcCccccc
Q psy5743 472 MYLRSQIGSVSQEPTLFSGTIYENILYGVNDSS----------------SVTKSDIIHAAKEANAYGFVIDFKNGFDTIV 535 (644)
Q Consensus 472 ~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~----------------~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~i 535 (644)
..+|+.++||+|++.+|++|++||+.++..... ...++++.++++..++.+ ++++..
T Consensus 122 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~~~~~~ 194 (305)
T PRK14264 122 VELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWD-------EVNDRL 194 (305)
T ss_pred HHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCch-------hhhHHh
Confidence 678889999999999999999999998632100 011334555566555433 344556
Q ss_pred cCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh-hcCEE-EEEe
Q psy5743 536 GERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIR-KSNQI-CVLD 613 (644)
Q Consensus 536 ge~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~-~aD~I-ivl~ 613 (644)
.....+||||||||++|||||+++|+||||||||++||..+...+.+.|+++.+++|+|+|||+++.+. .||+| ++|+
T Consensus 195 ~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l~ 274 (305)
T PRK14264 195 DDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLT 274 (305)
T ss_pred cCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEec
Confidence 777889999999999999999999999999999999999999999999999877899999999999975 59997 5689
Q ss_pred CCeEEEecChhHHhcC
Q psy5743 614 KGKIVEIGSYAHLIKN 629 (644)
Q Consensus 614 ~G~ive~Gt~~eLl~~ 629 (644)
+|++++.|+++++.+.
T Consensus 275 ~G~i~~~g~~~~~~~~ 290 (305)
T PRK14264 275 GGELVEYDDTDKIFEN 290 (305)
T ss_pred CCEEEEeCCHHHHHhC
Confidence 9999999999998764
No 224
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-44 Score=366.43 Aligned_cols=222 Identities=32% Similarity=0.507 Sum_probs=189.6
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCC-----CcEEEECCccCCC--CCh
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQ-----NGKILIDGVDIKE--LDP 471 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~-----~G~I~idg~~i~~--~~~ 471 (644)
.|+++|++++|++ +.+|+|+||++++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.++.. .+.
T Consensus 7 ~l~~~nl~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~ 83 (261)
T PRK14258 7 AIKVNNLSFYYDT---QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNL 83 (261)
T ss_pred eEEEeeEEEEeCC---eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccch
Confidence 5999999999963 36899999999999999999999999999999999999985 8999999999853 345
Q ss_pred HHHhcceEEEecCCCCCcccHHHHHhcCCCCCC---CCC-HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHH
Q psy5743 472 MYLRSQIGSVSQEPTLFSGTIYENILYGVNDSS---SVT-KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQK 547 (644)
Q Consensus 472 ~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~---~~~-~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQk 547 (644)
..+|+.++|++|++.+|..|++||+.++..... ..+ ++++.++++..++.+++.. ..+.....||||||
T Consensus 84 ~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~LSgGq~ 156 (261)
T PRK14258 84 NRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKH-------KIHKSALDLSGGQQ 156 (261)
T ss_pred HHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhh-------HhcCCcccCCHHHH
Confidence 678889999999999999999999987531100 011 3445667777776555442 34566789999999
Q ss_pred HHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc--CCceEEEEccCchHHh-hcCEEEEEeC-----CeEEE
Q psy5743 548 QRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI--EGKTVLTIAHRLSTIR-KSNQICVLDK-----GKIVE 619 (644)
Q Consensus 548 QRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~--~~~TvI~IaHrl~~i~-~aD~Iivl~~-----G~ive 619 (644)
||++||||++++|++|||||||++||.++...+.+.|.++. .++|+|+|||+++.+. .||+|++|++ |++++
T Consensus 157 qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~ 236 (261)
T PRK14258 157 QRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVE 236 (261)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEE
Confidence 99999999999999999999999999999999999998864 4799999999999885 6899999999 99999
Q ss_pred ecChhHHhcCC
Q psy5743 620 IGSYAHLIKNP 630 (644)
Q Consensus 620 ~Gt~~eLl~~~ 630 (644)
.|+++++.+.+
T Consensus 237 ~~~~~~~~~~~ 247 (261)
T PRK14258 237 FGLTKKIFNSP 247 (261)
T ss_pred eCCHHHHHhCC
Confidence 99999997653
No 225
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=1.9e-44 Score=357.40 Aligned_cols=204 Identities=33% Similarity=0.516 Sum_probs=171.3
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCC--CChHHHhcc
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKE--LDPMYLRSQ 477 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~--~~~~~lr~~ 477 (644)
|+++||+++|++ +++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .+...+|+.
T Consensus 1 l~~~~l~~~~~~---~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (213)
T cd03262 1 IEIKNLHKSFGD---FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQK 77 (213)
T ss_pred CEEEEEEEEECC---eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhc
Confidence 478999999964 469999999999999999999999999999999999999999999999999853 455678889
Q ss_pred eEEEecCCCCCc-ccHHHHHhcCCCCCCCCCHH----HHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHH
Q psy5743 478 IGSVSQEPTLFS-GTIYENILYGVNDSSSVTKS----DIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAI 552 (644)
Q Consensus 478 i~~V~Q~~~Lf~-gTIreNI~~g~~~~~~~~~~----~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaL 552 (644)
++||+|++.+|. .|++||+.++.......+.+ ++.++++..+ ++..+......||||||||++|
T Consensus 78 i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LS~G~~qrv~l 146 (213)
T cd03262 78 VGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVG-----------LADKADAYPAQLSGGQQQRVAI 146 (213)
T ss_pred ceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcC-----------CHhHhhhCccccCHHHHHHHHH
Confidence 999999999997 69999998763210112222 2333333333 3333444557899999999999
Q ss_pred HHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC-CceEEEEccCchHHh-hcCEEEEEeCCeE
Q psy5743 553 ARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE-GKTVLTIAHRLSTIR-KSNQICVLDKGKI 617 (644)
Q Consensus 553 ARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~-~~TvI~IaHrl~~i~-~aD~Iivl~~G~i 617 (644)
|||++++|++|||||||++||+++.+.+.+.|.++.+ ++|+|++||+++.+. .||+|++|++|++
T Consensus 147 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 147 ARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 9999999999999999999999999999999998754 789999999999985 5999999999975
No 226
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.3e-44 Score=376.43 Aligned_cols=230 Identities=21% Similarity=0.339 Sum_probs=189.4
Q ss_pred EEEEEEEEEcCCC-CCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCC----CCCcEEEECCccCCCCChHHH
Q psy5743 400 IDFNNIRFSYPSR-PDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD----PQNGKILIDGVDIKELDPMYL 474 (644)
Q Consensus 400 I~~~~vsf~Y~~~-~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~----p~~G~I~idg~~i~~~~~~~l 474 (644)
|+++|++++|+.. ....+++||||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.+||+++..++...+
T Consensus 4 L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~ 83 (330)
T PRK15093 4 LDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRER 83 (330)
T ss_pred EEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHH
Confidence 7899999999642 23469999999999999999999999999999999999996 589999999999999887765
Q ss_pred h----cceEEEecCCCC--C-cccHHHHHhcCCC---CCC------CCCHHHHHHHHHHHhhccchhhhhcCccccccCC
Q psy5743 475 R----SQIGSVSQEPTL--F-SGTIYENILYGVN---DSS------SVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGER 538 (644)
Q Consensus 475 r----~~i~~V~Q~~~L--f-~gTIreNI~~g~~---~~~------~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~ 538 (644)
+ +.|+||+|++.. + ..||.+|+..... ... ...++++.++++..++.+.-. .....
T Consensus 84 ~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~--------~~~~~ 155 (330)
T PRK15093 84 RKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKD--------AMRSF 155 (330)
T ss_pred HHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHH--------HHhCC
Confidence 4 479999999973 3 3589999964210 000 011345677777777754211 12333
Q ss_pred CCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEEEeCC
Q psy5743 539 GIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIR-KSNQICVLDKG 615 (644)
Q Consensus 539 G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~-~aD~Iivl~~G 615 (644)
...||||||||++|||||+.+|++||+|||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+. .||+|++|++|
T Consensus 156 p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G 235 (330)
T PRK15093 156 PYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCG 235 (330)
T ss_pred chhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 468999999999999999999999999999999999999999999998764 789999999999995 59999999999
Q ss_pred eEEEecChhHHhcCCCcHHHHH
Q psy5743 616 KIVEIGSYAHLIKNPNSMFNKL 637 (644)
Q Consensus 616 ~ive~Gt~~eLl~~~~~~y~~l 637 (644)
+|+|.|+.+++.+++...|.+.
T Consensus 236 ~ive~g~~~~i~~~p~~~y~~~ 257 (330)
T PRK15093 236 QTVETAPSKELVTTPHHPYTQA 257 (330)
T ss_pred EEEEECCHHHHHhCCCCHHHHH
Confidence 9999999999987655667653
No 227
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-44 Score=381.15 Aligned_cols=212 Identities=26% Similarity=0.434 Sum_probs=184.7
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCC----ChHHHh
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKEL----DPMYLR 475 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~----~~~~lr 475 (644)
|++ |++++|++ .. + |+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... +...++
T Consensus 2 l~~-~l~k~~~~---~~-~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 75 (352)
T PRK11144 2 LEL-NFKQQLGD---LC-L-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEK 75 (352)
T ss_pred eEE-EEEEEeCC---EE-E-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhh
Confidence 567 99999963 22 3 99999999999999999999999999999999999999999999998753 244568
Q ss_pred cceEEEecCCCCCc-ccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHH
Q psy5743 476 SQIGSVSQEPTLFS-GTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIAR 554 (644)
Q Consensus 476 ~~i~~V~Q~~~Lf~-gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLAR 554 (644)
+.++||+|++.+|. .|++|||.++.+. .+++++.++++..++.++..+. ..+||||||||++|||
T Consensus 76 ~~i~~v~q~~~l~~~~tv~enl~~~~~~---~~~~~~~~~l~~~gl~~~~~~~-----------~~~LSgGq~qRvalar 141 (352)
T PRK11144 76 RRIGYVFQDARLFPHYKVRGNLRYGMAK---SMVAQFDKIVALLGIEPLLDRY-----------PGSLSGGEKQRVAIGR 141 (352)
T ss_pred CCEEEEcCCcccCCCCcHHHHHHhhhhh---hhHHHHHHHHHHcCCchhhhCC-----------cccCCHHHHHHHHHHH
Confidence 89999999999996 6999999998543 4567778888888776554433 3689999999999999
Q ss_pred HHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhHHhcCCC
Q psy5743 555 ALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHLIKNPN 631 (644)
Q Consensus 555 All~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~eLl~~~~ 631 (644)
||+++|++||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+ ..||+|++|++|++++.|+++++..++.
T Consensus 142 aL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p~ 221 (352)
T PRK11144 142 ALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASSA 221 (352)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCcc
Confidence 99999999999999999999999999999988754 68999999999977 4599999999999999999999987643
No 228
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=3e-44 Score=355.76 Aligned_cols=205 Identities=30% Similarity=0.510 Sum_probs=176.1
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
++++||+++|+. .++|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||+++...+ .+++.++
T Consensus 1 ~~~~~l~~~~~~-----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~ 73 (213)
T TIGR01277 1 LALDKVRYEYEH-----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVS 73 (213)
T ss_pred CeEEeeeEEeCC-----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceE
Confidence 368999999962 467999999999999999999999999999999999999999999999987644 4678899
Q ss_pred EEecCCCCCcc-cHHHHHhcCC-CCC--CCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHH
Q psy5743 480 SVSQEPTLFSG-TIYENILYGV-NDS--SSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARA 555 (644)
Q Consensus 480 ~V~Q~~~Lf~g-TIreNI~~g~-~~~--~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARA 555 (644)
||+|++.+|.+ |++||+.++. +.. ...+++++.++++..++.+...+.| ..||||||||++||||
T Consensus 74 ~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~lara 142 (213)
T TIGR01277 74 MLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLP-----------EQLSGGQRQRVALARC 142 (213)
T ss_pred EEeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCc-----------ccCCHHHHHHHHHHHH
Confidence 99999999975 9999998742 110 0123456677777777765544444 3799999999999999
Q ss_pred HccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEEEeCCeEEEecC
Q psy5743 556 LIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGS 622 (644)
Q Consensus 556 ll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt 622 (644)
++++|+++||||||++||.++...+.+.|.++.+ ++|+|+|||+++.+. .||+|++|++|++++.|.
T Consensus 143 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 143 LVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 9999999999999999999999999999998753 789999999999875 599999999999999875
No 229
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=2.3e-44 Score=364.11 Aligned_cols=216 Identities=24% Similarity=0.325 Sum_probs=176.8
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccC--CCCCcEEEECCccCCCCChHHHh-c
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLY--DPQNGKILIDGVDIKELDPMYLR-S 476 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~--~p~~G~I~idg~~i~~~~~~~lr-~ 476 (644)
|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|.++..++....+ .
T Consensus 1 l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (243)
T TIGR01978 1 LKIKDLHVSVED---KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARA 77 (243)
T ss_pred CeEeeEEEEECC---EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhcc
Confidence 578999999963 46999999999999999999999999999999999994 79999999999999988876654 4
Q ss_pred ceEEEecCCCCCcc-cHHHHHhcCCCCCC------CCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChh
Q psy5743 477 QIGSVSQEPTLFSG-TIYENILYGVNDSS------SVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGG 545 (644)
Q Consensus 477 ~i~~V~Q~~~Lf~g-TIreNI~~g~~~~~------~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGG 545 (644)
.++||+|++.+|.+ |++||+.+...... ..+ ++++.++++..++.+. -.+..++ ..||||
T Consensus 78 ~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~---~~LS~G 148 (243)
T TIGR01978 78 GLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEE------FLNRSVN---EGFSGG 148 (243)
T ss_pred ceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchh------hcccccc---cCcCHH
Confidence 59999999999986 89999976421100 011 1233444444443211 0122221 259999
Q ss_pred HHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhh--cCEEEEEeCCeEEEecC
Q psy5743 546 QKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIRK--SNQICVLDKGKIVEIGS 622 (644)
Q Consensus 546 QkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~~--aD~Iivl~~G~ive~Gt 622 (644)
||||++||||++++|++|||||||++||+.+.+.+.+.|.++. +++|+|+|||+++.+.. ||+|++|++|++++.|+
T Consensus 149 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~ 228 (243)
T TIGR01978 149 EKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGD 228 (243)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecC
Confidence 9999999999999999999999999999999999999998875 47899999999999976 79999999999999999
Q ss_pred hhHHh
Q psy5743 623 YAHLI 627 (644)
Q Consensus 623 ~~eLl 627 (644)
+++.-
T Consensus 229 ~~~~~ 233 (243)
T TIGR01978 229 VELAK 233 (243)
T ss_pred HHHhc
Confidence 98654
No 230
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.3e-44 Score=365.91 Aligned_cols=221 Identities=31% Similarity=0.483 Sum_probs=189.0
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCC-----CCcEEEECCccCCC--CCh
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDP-----QNGKILIDGVDIKE--LDP 471 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p-----~~G~I~idg~~i~~--~~~ 471 (644)
-|+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|+++.. .+.
T Consensus 20 ~l~~~nl~~~~~~---~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~ 96 (274)
T PRK14265 20 VFEVEGVKVFYGG---FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINS 96 (274)
T ss_pred eEEEeeEEEEeCC---eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchh
Confidence 5999999999963 4699999999999999999999999999999999999864 69999999999864 345
Q ss_pred HHHhcceEEEecCCCCCcccHHHHHhcCCCCCC--CCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHH
Q psy5743 472 MYLRSQIGSVSQEPTLFSGTIYENILYGVNDSS--SVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQR 549 (644)
Q Consensus 472 ~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~--~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQR 549 (644)
..+|+.++|++|++.+|+.|++|||.++..... ...++++.++++.+++.+++.. ........||||||||
T Consensus 97 ~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LSgGq~qr 169 (274)
T PRK14265 97 VKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKD-------KLKEKGTALSGGQQQR 169 (274)
T ss_pred HHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHH-------HhcCCcccCCHHHHHH
Confidence 577889999999999999999999998632100 0123445666777776544432 2345667899999999
Q ss_pred HHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHH-hhcCEEEEEe---------CCeEEE
Q psy5743 550 IAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTI-RKSNQICVLD---------KGKIVE 619 (644)
Q Consensus 550 iaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i-~~aD~Iivl~---------~G~ive 619 (644)
++|||||+++|++|||||||++||..+...+.+.|.++.+++|+|+|||+++.+ +.||+|++|+ +|++++
T Consensus 170 v~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~ 249 (274)
T PRK14265 170 LCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVE 249 (274)
T ss_pred HHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEE
Confidence 999999999999999999999999999999999999987789999999999988 5699999997 899999
Q ss_pred ecChhHHhcC
Q psy5743 620 IGSYAHLIKN 629 (644)
Q Consensus 620 ~Gt~~eLl~~ 629 (644)
.|+.+++..+
T Consensus 250 ~g~~~~~~~~ 259 (274)
T PRK14265 250 FSPTEQMFGS 259 (274)
T ss_pred eCCHHHHHhC
Confidence 9999998764
No 231
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=2.1e-44 Score=374.73 Aligned_cols=214 Identities=23% Similarity=0.392 Sum_probs=184.5
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
++++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +...+|+.+|
T Consensus 3 l~~~~l~~~~~~---~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig 78 (301)
T TIGR03522 3 IRVSSLTKLYGT---QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIG 78 (301)
T ss_pred EEEEEEEEEECC---EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceE
Confidence 789999999963 469999999999999999999999999999999999999999999999999977 4567888999
Q ss_pred EEecCCCCCcc-cHHHHHhcCCCCCCCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHH
Q psy5743 480 SVSQEPTLFSG-TIYENILYGVNDSSSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIAR 554 (644)
Q Consensus 480 ~V~Q~~~Lf~g-TIreNI~~g~~~~~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLAR 554 (644)
|+||++.+|.+ |++||+.+..... ..+ .+++.++++..++ +.........||||||||++|||
T Consensus 79 ~~~q~~~l~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~gl-----------~~~~~~~~~~LS~G~~qrv~la~ 146 (301)
T TIGR03522 79 YLPEHNPLYLDMYVREYLQFIAGIY-GMKGQLLKQRVEEMIELVGL-----------RPEQHKKIGQLSKGYRQRVGLAQ 146 (301)
T ss_pred EecCCCCCCCCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHCCC-----------chHhcCchhhCCHHHHHHHHHHH
Confidence 99999999976 9999998643210 012 2334444444443 33344556789999999999999
Q ss_pred HHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhh-cCEEEEEeCCeEEEecChhHHhcC
Q psy5743 555 ALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLIKN 629 (644)
Q Consensus 555 All~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~-aD~Iivl~~G~ive~Gt~~eLl~~ 629 (644)
|++++|++|||||||++||+.+.+.+.+.|.++.+++|+|++||+++.+.. ||+|++|++|++++.|+.+++.+.
T Consensus 147 al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (301)
T TIGR03522 147 ALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAA 222 (301)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHh
Confidence 999999999999999999999999999999998778999999999998755 999999999999999999998653
No 232
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=5.6e-44 Score=365.42 Aligned_cols=215 Identities=28% Similarity=0.410 Sum_probs=185.3
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCC--------CcEEEECCccCCCCCh
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQ--------NGKILIDGVDIKELDP 471 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~--------~G~I~idg~~i~~~~~ 471 (644)
|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.+||.++...+.
T Consensus 2 l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~ 78 (272)
T PRK13547 2 LTADHLHVARRH---RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDA 78 (272)
T ss_pred eEEEEEEEEECC---EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCH
Confidence 689999999963 46999999999999999999999999999999999999998 9999999999998888
Q ss_pred HHHhcceEEEecCCC-CCcccHHHHHhcCCCCCC----CC---CHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCC
Q psy5743 472 MYLRSQIGSVSQEPT-LFSGTIYENILYGVNDSS----SV---TKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLS 543 (644)
Q Consensus 472 ~~lr~~i~~V~Q~~~-Lf~gTIreNI~~g~~~~~----~~---~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LS 543 (644)
..+++.++||+|++. +|+.|++||+.++..... .. +++++.++++.. |+++.++.....||
T Consensus 79 ~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS 147 (272)
T PRK13547 79 PRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALA-----------GATALVGRDVTTLS 147 (272)
T ss_pred HHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHc-----------CcHhhhcCCcccCC
Confidence 888989999999986 678999999988632100 01 122334444444 44455666778999
Q ss_pred hhHHHHHHHHHHHc---------cCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEE
Q psy5743 544 GGQKQRIAIARALI---------KKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIR-KSNQICV 611 (644)
Q Consensus 544 GGQkQRiaLARAll---------~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~-~aD~Iiv 611 (644)
||||||++||||++ .+|++|||||||++||+.+.+.+.+.|.++.+ ++|+|+|||+++.+. .||+|++
T Consensus 148 gG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~ 227 (272)
T PRK13547 148 GGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAM 227 (272)
T ss_pred HHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEE
Confidence 99999999999999 59999999999999999999999999998754 689999999999985 6999999
Q ss_pred EeCCeEEEecChhHHhc
Q psy5743 612 LDKGKIVEIGSYAHLIK 628 (644)
Q Consensus 612 l~~G~ive~Gt~~eLl~ 628 (644)
|++|++++.|++++++.
T Consensus 228 l~~G~i~~~g~~~~~~~ 244 (272)
T PRK13547 228 LADGAIVAHGAPADVLT 244 (272)
T ss_pred EECCeEEEecCHHHHcC
Confidence 99999999999999864
No 233
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=5.1e-44 Score=366.05 Aligned_cols=231 Identities=31% Similarity=0.445 Sum_probs=187.0
Q ss_pred EEEEEEEEEcCCC------CCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCCh--
Q psy5743 400 IDFNNIRFSYPSR------PDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDP-- 471 (644)
Q Consensus 400 I~~~~vsf~Y~~~------~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~-- 471 (644)
|+++||+|+|++. .++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..+++
T Consensus 4 l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~ 83 (268)
T PRK10419 4 LNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQ 83 (268)
T ss_pred EEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhH
Confidence 8899999999731 13579999999999999999999999999999999999999999999999999988776
Q ss_pred -HHHhcceEEEecCCC--CC-cccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccc-cccCCCCCCChhH
Q psy5743 472 -MYLRSQIGSVSQEPT--LF-SGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDT-IVGERGIMLSGGQ 546 (644)
Q Consensus 472 -~~lr~~i~~V~Q~~~--Lf-~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T-~ige~G~~LSGGQ 546 (644)
..+|+.++|++|++. ++ +.|++||+.+........+.++ ....+.+.+..+ |+++ ........|||||
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~-----~~~~~~~~l~~~--gl~~~~~~~~~~~LS~Ge 156 (268)
T PRK10419 84 RKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAE-----RLARASEMLRAV--DLDDSVLDKRPPQLSGGQ 156 (268)
T ss_pred HHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHH-----HHHHHHHHHHHc--CCChhHhhCCCccCChHH
Confidence 356889999999983 43 4799999865311000011111 111222333332 5653 4566778999999
Q ss_pred HHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEEEeCCeEEEecCh
Q psy5743 547 KQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSY 623 (644)
Q Consensus 547 kQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~ 623 (644)
|||++||||++.+|++|||||||++||.++...+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|++++.|++
T Consensus 157 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~ 236 (268)
T PRK10419 157 LQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPV 236 (268)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCCh
Confidence 9999999999999999999999999999999999999988753 789999999999997 5999999999999999999
Q ss_pred hHHhcCCCcHHHHHH
Q psy5743 624 AHLIKNPNSMFNKLM 638 (644)
Q Consensus 624 ~eLl~~~~~~y~~l~ 638 (644)
+++... ++.|..-+
T Consensus 237 ~~~~~~-~~~~~~~~ 250 (268)
T PRK10419 237 GDKLTF-SSPAGRVL 250 (268)
T ss_pred hhccCC-CCHHHHHH
Confidence 999865 45554433
No 234
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=1.2e-43 Score=360.95 Aligned_cols=229 Identities=22% Similarity=0.387 Sum_probs=187.7
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCC----CCcEEEECCccCCCCChHHH
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDP----QNGKILIDGVDIKELDPMYL 474 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p----~~G~I~idg~~i~~~~~~~l 474 (644)
.|+++|++++| + +++|+|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|+++... +..
T Consensus 4 ~l~~~~l~~~~-~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~--~~~ 77 (254)
T PRK10418 4 QIELRNIALQA-A---QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC--ALR 77 (254)
T ss_pred EEEEeCeEEEe-c---cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--ccc
Confidence 58999999999 2 3689999999999999999999999999999999999999 999999999998632 223
Q ss_pred hcceEEEecCCC-CCc--ccHHHHHhcCCCC-CCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHH
Q psy5743 475 RSQIGSVSQEPT-LFS--GTIYENILYGVND-SSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRI 550 (644)
Q Consensus 475 r~~i~~V~Q~~~-Lf~--gTIreNI~~g~~~-~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRi 550 (644)
++.++||+|++. .|. .|+.+|+.+.... .....++++.++++..++.++ ++.++.....||||||||+
T Consensus 78 ~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~~~~~~~~~~LS~Gq~qrv 149 (254)
T PRK10418 78 GRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENA--------ARVLKLYPFEMSGGMLQRM 149 (254)
T ss_pred cceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCCh--------hhhhhcCCcccCHHHHHHH
Confidence 467999999985 444 5888887542100 011345667777887776442 2345666789999999999
Q ss_pred HHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHHh
Q psy5743 551 AIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHLI 627 (644)
Q Consensus 551 aLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eLl 627 (644)
+||||++++|++||||||||+||..+.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|++++.|+.+++.
T Consensus 150 ~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 229 (254)
T PRK10418 150 MIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLF 229 (254)
T ss_pred HHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999988753 689999999999985 59999999999999999999998
Q ss_pred cCCCc-HHHHHHHhh
Q psy5743 628 KNPNS-MFNKLMKYQ 641 (644)
Q Consensus 628 ~~~~~-~y~~l~~~q 641 (644)
+++.. .++.++..+
T Consensus 230 ~~~~~~~~~~~~~~~ 244 (254)
T PRK10418 230 NAPKHAVTRSLVSAH 244 (254)
T ss_pred hCCCCHHHHHHHHhh
Confidence 65333 444455443
No 235
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=3.1e-44 Score=358.95 Aligned_cols=213 Identities=29% Similarity=0.422 Sum_probs=172.1
Q ss_pred EEEEEEEEEcCCCC-CCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCC---CCCcEEEECCccCCCCChHHHh
Q psy5743 400 IDFNNIRFSYPSRP-DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD---PQNGKILIDGVDIKELDPMYLR 475 (644)
Q Consensus 400 I~~~~vsf~Y~~~~-~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~---p~~G~I~idg~~i~~~~~~~lr 475 (644)
++++||+|+|++.. .+++++|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|.++. ...+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~~ 80 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQ 80 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHhc
Confidence 57999999998632 3689999999999999999999999999999999999999 99999999999875 35678
Q ss_pred cceEEEecCCCCCcc-cHHHHHhcCCCCCC-CCCHHHHHHHHHHHhhccchhhhhc-CccccccCCCCCCChhHHHHHHH
Q psy5743 476 SQIGSVSQEPTLFSG-TIYENILYGVNDSS-SVTKSDIIHAAKEANAYGFVIDFKN-GFDTIVGERGIMLSGGQKQRIAI 552 (644)
Q Consensus 476 ~~i~~V~Q~~~Lf~g-TIreNI~~g~~~~~-~~~~~~i~~a~~~a~l~~~i~~lp~-Gl~T~ige~G~~LSGGQkQRiaL 552 (644)
+.++|++|++.+|++ |++||+.++..... ....++.. ....+++ .++. |+..........|||||+||++|
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~----~~~~~~~--~l~~~~l~~~~~~~~~~LS~G~~qrl~l 154 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIR----KKRVEDV--LLRDLALTRIGGNLVKGISGGERRRVSI 154 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHH----HHHHHHH--HHHhhcchhhhcccccCcCHHHHHHHHH
Confidence 899999999999997 99999997532100 00111111 0011110 1122 23333344567999999999999
Q ss_pred HHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCc--hHHhhcCEEEEEeCCeEEEec
Q psy5743 553 ARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRL--STIRKSNQICVLDKGKIVEIG 621 (644)
Q Consensus 553 ARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl--~~i~~aD~Iivl~~G~ive~G 621 (644)
|||++++|+++||||||++||+.+.+.+.+.|.+.. +++|+|++||++ +....||+|++|++|++++.|
T Consensus 155 aral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 155 AVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 999999999999999999999999999999998864 478999999998 456789999999999999876
No 236
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=9.8e-44 Score=363.29 Aligned_cols=224 Identities=30% Similarity=0.443 Sum_probs=185.8
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCC---CcEEEECCccCCCC-----C
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQ---NGKILIDGVDIKEL-----D 470 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~---~G~I~idg~~i~~~-----~ 470 (644)
-|+++||+++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++... +
T Consensus 4 ~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 80 (262)
T PRK09984 4 IIRVEKLAKTFNQ---HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARD 80 (262)
T ss_pred EEEEeeEEEEeCC---eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchh
Confidence 3899999999963 46999999999999999999999999999999999999986 49999999998654 3
Q ss_pred hHHHhcceEEEecCCCCCc-ccHHHHHhcCCCCCC-----------CCCHHHHHHHHHHHhhccchhhhhcCccccccCC
Q psy5743 471 PMYLRSQIGSVSQEPTLFS-GTIYENILYGVNDSS-----------SVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGER 538 (644)
Q Consensus 471 ~~~lr~~i~~V~Q~~~Lf~-gTIreNI~~g~~~~~-----------~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~ 538 (644)
...+|+.++|++|++.+|. .|++||+.++..+.. ...++++.++++..++.+. +...
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~ 149 (262)
T PRK09984 81 IRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHF-----------AHQR 149 (262)
T ss_pred HHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHH-----------HhCC
Confidence 4567888999999999888 599999997632100 0112345555555554332 2345
Q ss_pred CCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHH-hhcCEEEEEeCC
Q psy5743 539 GIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTI-RKSNQICVLDKG 615 (644)
Q Consensus 539 G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i-~~aD~Iivl~~G 615 (644)
...||||||||++||||++.+|++|||||||++||.++.+.+.+.|+++.+ ++|+|+|||+++.+ ..||+|++|++|
T Consensus 150 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g 229 (262)
T PRK09984 150 VSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQG 229 (262)
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 567999999999999999999999999999999999999999999998753 78999999999975 669999999999
Q ss_pred eEEEecChhHHhcCCCcHHHHHHH
Q psy5743 616 KIVEIGSYAHLIKNPNSMFNKLMK 639 (644)
Q Consensus 616 ~ive~Gt~~eLl~~~~~~y~~l~~ 639 (644)
++++.|+++++ . .....+++.
T Consensus 230 ~i~~~g~~~~~-~--~~~~~~~~~ 250 (262)
T PRK09984 230 HVFYDGSSQQF-D--NERFDHLYR 250 (262)
T ss_pred EEEEeCCHHHh-c--cHHHHHHHh
Confidence 99999999996 2 235555554
No 237
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=5.6e-44 Score=355.59 Aligned_cols=207 Identities=29% Similarity=0.409 Sum_probs=175.9
Q ss_pred EEEEEEEEEcCCCC-CCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChH---HHh
Q psy5743 400 IDFNNIRFSYPSRP-DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPM---YLR 475 (644)
Q Consensus 400 I~~~~vsf~Y~~~~-~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~---~lr 475 (644)
++++|+++.|++.. ++.+|+|+||++++||++||+|+||||||||+++|+|+++|++|+|.+||+++..+++. .+|
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 78999999996421 25699999999999999999999999999999999999999999999999999877754 468
Q ss_pred cceEEEecCCCCCc-ccHHHHHhcCCCCCCCCCHH----HHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHH
Q psy5743 476 SQIGSVSQEPTLFS-GTIYENILYGVNDSSSVTKS----DIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRI 550 (644)
Q Consensus 476 ~~i~~V~Q~~~Lf~-gTIreNI~~g~~~~~~~~~~----~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRi 550 (644)
+.++|++|++.+|. .|+.||+.++.......+.+ ++.++++..++.+++. .....||||||||+
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~lS~G~~qrv 150 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLD-----------YYPHNLSGGQKQRV 150 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhh-----------cChhhCCHHHHHHH
Confidence 89999999999998 69999999764211112222 3444555555544433 34458999999999
Q ss_pred HHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHhhcCEEEEEeCCeE
Q psy5743 551 AIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIRKSNQICVLDKGKI 617 (644)
Q Consensus 551 aLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~~aD~Iivl~~G~i 617 (644)
+||||++++|+++||||||++||+++...+.+.|+++.+ ++|+|+|||+++....||+|++|++|++
T Consensus 151 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 151 AIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 999999999999999999999999999999999988763 7999999999998889999999999986
No 238
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=6.8e-44 Score=374.80 Aligned_cols=214 Identities=32% Similarity=0.490 Sum_probs=182.7
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
-|+++|++++|++ ..+|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.++...+ ..+|+.+
T Consensus 41 ~i~i~nl~k~y~~---~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~i 116 (340)
T PRK13536 41 AIDLAGVSKSYGD---KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARI 116 (340)
T ss_pred eEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccE
Confidence 4999999999963 46999999999999999999999999999999999999999999999999997654 5678899
Q ss_pred EEEecCCCCC-cccHHHHHhcCCCCCCCCCHHH----HHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHH
Q psy5743 479 GSVSQEPTLF-SGTIYENILYGVNDSSSVTKSD----IIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIA 553 (644)
Q Consensus 479 ~~V~Q~~~Lf-~gTIreNI~~g~~~~~~~~~~~----i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLA 553 (644)
|||||++.+| ..|++||+.+..... ..+.++ +.++++..+ +++..++.+ .+||||||||++||
T Consensus 117 g~v~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~ll~~~~-------L~~~~~~~~----~~LS~G~kqrv~lA 184 (340)
T PRK13536 117 GVVPQFDNLDLEFTVRENLLVFGRYF-GMSTREIEAVIPSLLEFAR-------LESKADARV----SDLSGGMKRRLTLA 184 (340)
T ss_pred EEEeCCccCCCCCcHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcC-------CchhhCCCh----hhCCHHHHHHHHHH
Confidence 9999999987 569999998643211 123222 223333333 344455555 47999999999999
Q ss_pred HHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHHhc
Q psy5743 554 RALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHLIK 628 (644)
Q Consensus 554 RAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eLl~ 628 (644)
|||+.+|++|||||||++||+.+.+.+.+.|.++. .++|+|++||+++.+. .||+|++|++|++++.|+.+++.+
T Consensus 185 ~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 261 (340)
T PRK13536 185 RALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALID 261 (340)
T ss_pred HHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999998875 4799999999999985 599999999999999999999875
No 239
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=1.1e-43 Score=377.02 Aligned_cols=215 Identities=28% Similarity=0.469 Sum_probs=179.6
Q ss_pred EEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCC----hHHHhcceE
Q psy5743 404 NIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELD----PMYLRSQIG 479 (644)
Q Consensus 404 ~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~----~~~lr~~i~ 479 (644)
|++++|++ .. + |+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+ ...+|+.++
T Consensus 4 ~l~~~~~~---~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~ 78 (354)
T TIGR02142 4 RFSKRLGD---FS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIG 78 (354)
T ss_pred EEEEEECC---EE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeE
Confidence 89999963 23 4 999999999999999999999999999999999999999999999987543 345688999
Q ss_pred EEecCCCCCcc-cHHHHHhcCCCCCCCC-CHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHc
Q psy5743 480 SVSQEPTLFSG-TIYENILYGVNDSSSV-TKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALI 557 (644)
Q Consensus 480 ~V~Q~~~Lf~g-TIreNI~~g~~~~~~~-~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll 557 (644)
||+|++.+|.. |++||+.++....... .++++.++++..++. .........||||||||++|||||+
T Consensus 79 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~-----------~~~~~~~~~LSgGqkqRvalAraL~ 147 (354)
T TIGR02142 79 YVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIG-----------HLLGRLPGRLSGGEKQRVAIGRALL 147 (354)
T ss_pred EEecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCCh-----------hHhcCChhhCCHHHHHHHHHHHHHH
Confidence 99999999975 9999999875321100 122345555555443 3344455789999999999999999
Q ss_pred cCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHHhcCCCcHH
Q psy5743 558 KKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHLIKNPNSMF 634 (644)
Q Consensus 558 ~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eLl~~~~~~y 634 (644)
.+|++||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|++++.|+++++...+...|
T Consensus 148 ~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~ 227 (354)
T TIGR02142 148 SSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPDLPW 227 (354)
T ss_pred cCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcCcCccc
Confidence 99999999999999999999999999998754 689999999999885 599999999999999999999987644333
No 240
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=8.2e-44 Score=370.68 Aligned_cols=201 Identities=25% Similarity=0.371 Sum_probs=172.6
Q ss_pred CccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcc-cHH
Q psy5743 415 AVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSG-TIY 493 (644)
Q Consensus 415 ~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~g-TIr 493 (644)
.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ....+|+.+|||+|++.+|.. |++
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~~~~tv~ 84 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVDEDLTGR 84 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCCCCCCcHH
Confidence 469999999999999999999999999999999999999999999999999876 456778899999999999976 999
Q ss_pred HHHhcCCCCCCCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeeccc
Q psy5743 494 ENILYGVNDSSSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEAT 569 (644)
Q Consensus 494 eNI~~g~~~~~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaT 569 (644)
||+.++.... ..+ ++++.++++..++.+. .......||||||||++|||||+++|++|||||||
T Consensus 85 e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt 152 (302)
T TIGR01188 85 ENLEMMGRLY-GLPKDEAEERAEELLELFELGEA-----------ADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPT 152 (302)
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHHHHHcCChhH-----------hCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 9998753210 112 2345555555554332 22334689999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHHhc
Q psy5743 570 SALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHLIK 628 (644)
Q Consensus 570 SaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eLl~ 628 (644)
++||+.+.+.+.+.|+++. +++|+|++||+++.+. .||+|++|++|++++.|+++++.+
T Consensus 153 ~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~ 213 (302)
T TIGR01188 153 TGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKR 213 (302)
T ss_pred cCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHH
Confidence 9999999999999998875 4789999999999985 599999999999999999999865
No 241
>KOG0060|consensus
Probab=100.00 E-value=7.1e-41 Score=352.23 Aligned_cols=475 Identities=19% Similarity=0.210 Sum_probs=337.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccChhHH----HHHHHhhHHHHHHHHHHHHHHH
Q psy5743 127 LMLVFVVGACCNFGRVYLMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGEL----INRISADTSLVSQCVTQNISDG 202 (644)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i----~sr~~~D~~~i~~~~~~~~~~~ 202 (644)
.+++......+..+..|......-+...++.+-++.+.++ ...||.-.+.++. =+|+++|+++.-..+.....++
T Consensus 128 ~~~~~~~~s~~~a~~ky~~~~L~Lr~R~~ltk~lh~~Y~k-~~~yYkis~~d~ridNPDQrltqDv~kf~~~l~sl~s~l 206 (659)
T KOG0060|consen 128 YVLLIPGISLLNALLKFTTNELYLRFRKNLTKYLHRLYFK-GFTYYKLSNLDDRIDNPDQRLTQDVEKFCRQLSSLYSNL 206 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHhc-cceEEEecccccccCChHHHHhHHHHHHHHHHHHHHHhh
Confidence 3344444445556666666666666666666666666554 2334443333333 3799999998877777666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHH
Q psy5743 203 LRSTVMVSAGVSMMFIISSKLALISLIIVPP-VAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKL 281 (644)
Q Consensus 203 ~~~~~~~i~~~~~l~~~~~~l~li~l~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~ 281 (644)
+.+++.++.+...++-..++++.+.+....+ -.++...+.+..-+...++.+...+..-.-++...|.++|-.|+.++.
T Consensus 207 ~~a~~di~~Y~~~l~~s~g~~gp~~i~~Yf~~~~vi~~~L~~pI~~l~~~qeklEGdfRy~h~rlr~NaE~iAFY~g~~~ 286 (659)
T KOG0060|consen 207 LKAPFDLVYYTFRLFESAGWLGPVSIFAYFLIGTVINKTLRGPIVKLTVEQEKLEGDFRYKHSRLRVNAEEIAFYRGGQV 286 (659)
T ss_pred hccceeeehhhhHHhhhcCcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhhcchhhheeeeeecchhhhhhccCch
Confidence 6666667777777776666666665544433 445566666666677777777777777777788899999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HcCCcCHhHHHHHHHHHHH----HHHH
Q psy5743 282 EMSHFNAKMDDLFELAKKEALAKGVFFGFTGLSGNAIILSVLYYGGVMV----SYETITVGNLSSFLLYAAY----IGIS 353 (644)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~g~~~v----~~g~~t~g~l~a~~~~~~~----~~~~ 353 (644)
+.....+..++..+.......++.+...+.++.-.+..++...+-+..+ ..+.++..++...+..-.. +...
T Consensus 287 E~~~~~~~f~~Lv~~l~~l~~~r~~l~f~~n~~~Ylg~ilsy~vi~~p~Fs~h~y~~~s~aEL~~~i~~na~~~i~Li~~ 366 (659)
T KOG0060|consen 287 EHQRTDQRFRNLVQHLRELMSFRFWLGFIDNIFDYLGGILSYVVIAIPFFSGHVYDDLSPAELSGLISNNAFVFIYLISA 366 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeEEeeeeecccccCCcCHHHHHHHHhhhHHHHHHHHHH
Confidence 8888777777777666655555544444444332222221111111111 2346777777665544333 3333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-------------cc-CC-------CCCccCCCCCccEEEEEEEEEcCCC
Q psy5743 354 IGGLSNFYSELNKGLGACHRLWEIMEREPL-------------IS-TS-------GGKFFSHSLKGEIDFNNIRFSYPSR 412 (644)
Q Consensus 354 l~~l~~~~~~~~~~~~s~~Rl~~~l~~~~~-------------~~-~~-------~~~~~~~~~~~~I~~~~vsf~Y~~~ 412 (644)
+..+......+.+-..-.+|+.|+.+.-.+ +. +. ++.....+.+..|++++|+++-|.+
T Consensus 367 f~~l~~~~~~ls~lsGyt~Ri~el~~~l~d~~~~~~~~~~~~~~~~E~~~~l~~~~G~~~~~~~Dn~i~~e~v~l~tPt~ 446 (659)
T KOG0060|consen 367 FGRLVDLSRDLSRLSGYTHRIGELMEVLDDLSSGSQECTMEEEELGEAEWGLSLPPGSGKAEPADNAIEFEEVSLSTPTN 446 (659)
T ss_pred HHHHHHHhhhHHHhhhHHHHHHHHHHHHHHhccCCcchhhhhhhhhhhhhccCCCCCCcccccccceEEeeeeeecCCCC
Confidence 444444445554444556777776542100 00 00 0001112334579999999999875
Q ss_pred CCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccH
Q psy5743 413 PDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTI 492 (644)
Q Consensus 413 ~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTI 492 (644)
.+.+.+|+||+|+.|+.+.|+||||||||+|++.|.|+++..+|++.--.+.-. +.+-||||.|+.=.||+
T Consensus 447 -g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~--------~~lfflPQrPYmt~GTL 517 (659)
T KOG0060|consen 447 -GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGP--------KDLFFLPQRPYMTLGTL 517 (659)
T ss_pred -CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCC--------CceEEecCCCCccccch
Confidence 567788899999999999999999999999999999999999999985432111 35999999999999999
Q ss_pred HHHHhcCC----CCCCCCCHHHHHHHHHHHhhccchhhhhcCcccccc-CCCCCCChhHHHHHHHHHHHccCCCEEEeec
Q psy5743 493 YENILYGV----NDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVG-ERGIMLSGGQKQRIAIARALIKKSKILLLDE 567 (644)
Q Consensus 493 reNI~~g~----~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ig-e~G~~LSGGQkQRiaLARAll~~p~IliLDE 567 (644)
||-+.|-. ++...++|+++.+.++.+++...+++ -+|+|+++- |=..-||+||+||+|.||-+|.+|++-||||
T Consensus 518 RdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r-~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE 596 (659)
T KOG0060|consen 518 RDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLER-EGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDE 596 (659)
T ss_pred hheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHH-hCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeec
Confidence 99999862 23346899999999999999776555 679997654 5578899999999999999999999999999
Q ss_pred ccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeC
Q psy5743 568 ATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDK 614 (644)
Q Consensus 568 aTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~ 614 (644)
+|||||.+.|..+.+.+++. +.|-|-|.||.+.-+.-|.++.|+.
T Consensus 597 ~TSAv~~dvE~~~Yr~~r~~--giT~iSVgHRkSL~kfHd~~L~~~g 641 (659)
T KOG0060|consen 597 CTSAVTEDVEGALYRKCREM--GITFISVGHRKSLWKFHDYVLRMDG 641 (659)
T ss_pred hhhhccHHHHHHHHHHHHHc--CCeEEEeccHHHHHhhhhEEEEecC
Confidence 99999999999999999887 9999999999999999999999985
No 242
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=4.1e-43 Score=357.05 Aligned_cols=228 Identities=25% Similarity=0.393 Sum_probs=183.0
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCcc-----CCCCChHH
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVD-----IKELDPMY 473 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~-----i~~~~~~~ 473 (644)
-|+++||+++|++ ..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ +..++...
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (253)
T TIGR02323 3 LLQVSGLSKSYGG---GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAE 79 (253)
T ss_pred eEEEeeeEEEeCC---ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHH
Confidence 4899999999963 358999999999999999999999999999999999999999999999988 77777654
Q ss_pred H----hcceEEEecCCC--C-CcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCcc-ccccCCCCCCChh
Q psy5743 474 L----RSQIGSVSQEPT--L-FSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFD-TIVGERGIMLSGG 545 (644)
Q Consensus 474 l----r~~i~~V~Q~~~--L-f~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~-T~ige~G~~LSGG 545 (644)
. ++.++|++|++. + +..|+.+|+.+........+..+. ...+.++++.+ |++ +........||||
T Consensus 80 ~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----~~~~~~~l~~l--~l~~~~~~~~~~~LSgG 152 (253)
T TIGR02323 80 RRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNI-----RAAAHDWLEEV--EIDPTRIDDLPRAFSGG 152 (253)
T ss_pred HHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHH-----HHHHHHHHHHc--CCChhhhhcCchhcCHH
Confidence 3 467999999985 2 345888998642100000011111 12223444444 333 4556678899999
Q ss_pred HHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEEEeCCeEEEecC
Q psy5743 546 QKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGS 622 (644)
Q Consensus 546 QkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt 622 (644)
||||++||||++++|++|||||||++||+.+.+.+.+.|.+..+ +.|+|+|||+++.+. .||++++|++|++++.|+
T Consensus 153 ~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~ 232 (253)
T TIGR02323 153 MQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGL 232 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999988643 789999999999997 599999999999999999
Q ss_pred hhHHhcCCCcHHHH
Q psy5743 623 YAHLIKNPNSMFNK 636 (644)
Q Consensus 623 ~~eLl~~~~~~y~~ 636 (644)
++++..++...|.+
T Consensus 233 ~~~~~~~~~~~~~~ 246 (253)
T TIGR02323 233 TDQVLDDPQHPYTQ 246 (253)
T ss_pred HHHHhcCCCCHHHH
Confidence 99998654444543
No 243
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.5e-43 Score=345.85 Aligned_cols=191 Identities=27% Similarity=0.390 Sum_probs=164.8
Q ss_pred cEEEEEEEEEcCCC-CCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCC---CCCcEEEECCccCCCCChHHH
Q psy5743 399 EIDFNNIRFSYPSR-PDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD---PQNGKILIDGVDIKELDPMYL 474 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~-~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~---p~~G~I~idg~~i~~~~~~~l 474 (644)
.+.++||+|.|+.. .++++|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|.++...+ ...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~ 81 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKY 81 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hhh
Confidence 37899999999853 35679999999999999999999999999999999999999 89999999999998765 457
Q ss_pred hcceEEEecCCCCCcc-cHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHH
Q psy5743 475 RSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIA 553 (644)
Q Consensus 475 r~~i~~V~Q~~~Lf~g-TIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLA 553 (644)
|+.++|++|++.+|.+ |++|||.++.. .. ..+....||||||||++||
T Consensus 82 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~----~~---------------------------~~~~~~~LS~Ge~qrl~la 130 (202)
T cd03233 82 PGEIIYVSEEDVHFPTLTVRETLDFALR----CK---------------------------GNEFVRGISGGERKRVSIA 130 (202)
T ss_pred cceEEEEecccccCCCCcHHHHHhhhhh----hc---------------------------cccchhhCCHHHHHHHHHH
Confidence 8899999999988874 99999987621 00 1234467999999999999
Q ss_pred HHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccC-chHH-hhcCEEEEEeCCeEEEec
Q psy5743 554 RALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHR-LSTI-RKSNQICVLDKGKIVEIG 621 (644)
Q Consensus 554 RAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHr-l~~i-~~aD~Iivl~~G~ive~G 621 (644)
||++++|+++||||||++||+++++.+.+.|+++.+ +.|+|+++|+ ++.+ +.||+|++|++|++++.|
T Consensus 131 ral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 131 EALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred HHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 999999999999999999999999999999998754 4576766554 4554 679999999999998765
No 244
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-43 Score=359.23 Aligned_cols=204 Identities=31% Similarity=0.445 Sum_probs=172.3
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
|+++|++++|++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++... ++.++
T Consensus 2 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~ 73 (255)
T PRK11248 2 LQISHLYADYGG---KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAERG 73 (255)
T ss_pred EEEEEEEEEeCC---eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcEE
Confidence 689999999963 4699999999999999999999999999999999999999999999999988643 24689
Q ss_pred EEecCCCCCc-ccHHHHHhcCCCCCCCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHH
Q psy5743 480 SVSQEPTLFS-GTIYENILYGVNDSSSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIAR 554 (644)
Q Consensus 480 ~V~Q~~~Lf~-gTIreNI~~g~~~~~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLAR 554 (644)
|++|++.+|. .|++||+.++.... ..+ ++++.++++..++.+ .......+||||||||++|||
T Consensus 74 ~v~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~gl~~-----------~~~~~~~~LSgGq~qrl~lar 141 (255)
T PRK11248 74 VVFQNEGLLPWRNVQDNVAFGLQLA-GVEKMQRLEIAHQMLKKVGLEG-----------AEKRYIWQLSGGQRQRVGIAR 141 (255)
T ss_pred EEeCCCccCCCCcHHHHHHhHHHHc-CCCHHHHHHHHHHHHHHcCChh-----------HhhCChhhCCHHHHHHHHHHH
Confidence 9999999987 69999998753210 112 233445555555432 233455789999999999999
Q ss_pred HHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc--CCceEEEEccCchHHh-hcCEEEEEe--CCeEEEecCh
Q psy5743 555 ALIKKSKILLLDEATSALDAENEYLVQSAIEKLI--EGKTVLTIAHRLSTIR-KSNQICVLD--KGKIVEIGSY 623 (644)
Q Consensus 555 All~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~--~~~TvI~IaHrl~~i~-~aD~Iivl~--~G~ive~Gt~ 623 (644)
|++++|++|||||||++||+.+...+.+.|.++. .++|+|+|||+++.+. .||+|++|+ +|++++.++.
T Consensus 142 al~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 142 ALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence 9999999999999999999999999999998873 3799999999999874 599999998 5999998865
No 245
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.4e-43 Score=337.48 Aligned_cols=170 Identities=36% Similarity=0.641 Sum_probs=157.9
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+ ..+|+.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (173)
T cd03230 1 IEVRNLSKRYGK---KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIG 76 (173)
T ss_pred CEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-HhhhccEE
Confidence 478999999964 36999999999999999999999999999999999999999999999999998765 67788999
Q ss_pred EEecCCCCCcc-cHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHcc
Q psy5743 480 SVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIK 558 (644)
Q Consensus 480 ~V~Q~~~Lf~g-TIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~ 558 (644)
|++|++.+|.+ |++||+. |||||+||++||||+++
T Consensus 77 ~~~q~~~~~~~~tv~~~~~--------------------------------------------LS~G~~qrv~laral~~ 112 (173)
T cd03230 77 YLPEEPSLYENLTVRENLK--------------------------------------------LSGGMKQRLALAQALLH 112 (173)
T ss_pred EEecCCccccCCcHHHHhh--------------------------------------------cCHHHHHHHHHHHHHHc
Confidence 99999999987 9999983 99999999999999999
Q ss_pred CCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHh-hcCEEEEEeCCeE
Q psy5743 559 KSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIR-KSNQICVLDKGKI 617 (644)
Q Consensus 559 ~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~-~aD~Iivl~~G~i 617 (644)
+|++++|||||++||..+.+.+.+.|+++. ++.|+|++||+++.+. .||+|++|++|++
T Consensus 113 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 113 DPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 999999999999999999999999999875 3589999999999887 6999999999974
No 246
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.4e-43 Score=339.13 Aligned_cols=172 Identities=43% Similarity=0.662 Sum_probs=159.7
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCC--hHHHhcc
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELD--PMYLRSQ 477 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~--~~~lr~~ 477 (644)
|+++|++++|++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++ ...+++.
T Consensus 1 i~~~~l~~~~~~---~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (178)
T cd03229 1 LELKNVSKRYGQ---KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRR 77 (178)
T ss_pred CEEEEEEEEECC---eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhc
Confidence 578999999963 46999999999999999999999999999999999999999999999999998876 6778899
Q ss_pred eEEEecCCCCCc-ccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHH
Q psy5743 478 IGSVSQEPTLFS-GTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARAL 556 (644)
Q Consensus 478 i~~V~Q~~~Lf~-gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAl 556 (644)
++|++|++.+|. .|++||+.+. ||||||||++||||+
T Consensus 78 i~~~~q~~~~~~~~t~~~~l~~~------------------------------------------lS~G~~qr~~la~al 115 (178)
T cd03229 78 IGMVFQDFALFPHLTVLENIALG------------------------------------------LSGGQQQRVALARAL 115 (178)
T ss_pred EEEEecCCccCCCCCHHHheeec------------------------------------------CCHHHHHHHHHHHHH
Confidence 999999999886 5999998642 999999999999999
Q ss_pred ccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEEEeCCe
Q psy5743 557 IKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIR-KSNQICVLDKGK 616 (644)
Q Consensus 557 l~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~-~aD~Iivl~~G~ 616 (644)
+++|+++||||||++||+.+...+.+.|.++.+ ++|+|+|||+++.+. .||+|++|++|+
T Consensus 116 ~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 116 AMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred HCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 999999999999999999999999999988765 589999999999997 599999999985
No 247
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=2.9e-43 Score=351.23 Aligned_cols=207 Identities=27% Similarity=0.395 Sum_probs=178.2
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
++++||+++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ++.++
T Consensus 1 l~l~~v~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~----~~~~~ 73 (223)
T TIGR03740 1 LETKNLSKRFGK---QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKD----LHKIG 73 (223)
T ss_pred CEEEeEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccc----cccEE
Confidence 478999999963 46999999999999999999999999999999999999999999999999876422 35799
Q ss_pred EEecCCCCCc-ccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHcc
Q psy5743 480 SVSQEPTLFS-GTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIK 558 (644)
Q Consensus 480 ~V~Q~~~Lf~-gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~ 558 (644)
|++|++.+|. .|++||+.++... ...+++++.++++..++.++.. .....||||||||++||||+++
T Consensus 74 ~~~q~~~~~~~~t~~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~~rv~laral~~ 141 (223)
T TIGR03740 74 SLIESPPLYENLTARENLKVHTTL-LGLPDSRIDEVLNIVDLTNTGK-----------KKAKQFSLGMKQRLGIAIALLN 141 (223)
T ss_pred EEcCCCCccccCCHHHHHHHHHHH-cCCCHHHHHHHHHHcCCcHHHh-----------hhHhhCCHHHHHHHHHHHHHhc
Confidence 9999999886 6999999875321 1134667777777777654332 2346799999999999999999
Q ss_pred CCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhH
Q psy5743 559 KSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAH 625 (644)
Q Consensus 559 ~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~e 625 (644)
+|++++|||||++||+.+.+.+.+.|.++. +++|+|++||+++.+ ..||+|++|++|++++.|+.++
T Consensus 142 ~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 142 HPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred CCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 999999999999999999999999998875 478999999999998 4699999999999999998765
No 248
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.3e-43 Score=335.89 Aligned_cols=171 Identities=61% Similarity=0.940 Sum_probs=162.1
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
|+++|++++|++. +.++++|+||++++|+.++|+||||||||||+++|+|+++|++|+|.++|.++..++...+|+.++
T Consensus 1 l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (171)
T cd03228 1 IEFKNVSFSYPGR-PKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIA 79 (171)
T ss_pred CEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEE
Confidence 4789999999752 246999999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccC
Q psy5743 480 SVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKK 559 (644)
Q Consensus 480 ~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~ 559 (644)
|++|++.+|+.|++||+ ||||||||++||||++.+
T Consensus 80 ~~~~~~~~~~~t~~e~l---------------------------------------------LS~G~~~rl~la~al~~~ 114 (171)
T cd03228 80 YVPQDPFLFSGTIRENI---------------------------------------------LSGGQRQRIAIARALLRD 114 (171)
T ss_pred EEcCCchhccchHHHHh---------------------------------------------hCHHHHHHHHHHHHHhcC
Confidence 99999999999999997 999999999999999999
Q ss_pred CCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCe
Q psy5743 560 SKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGK 616 (644)
Q Consensus 560 p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ 616 (644)
|+++||||||++||+.+...+.+.|.++.+++|+|++||+++.+..||++++|++|+
T Consensus 115 p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 115 PPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred CCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 999999999999999999999999998877899999999999998899999999985
No 249
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.5e-43 Score=341.33 Aligned_cols=182 Identities=30% Similarity=0.488 Sum_probs=162.4
Q ss_pred cEEEEEEEEEcCCCC-CCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccC--CCCCcEEEECCccCCCCChHHHh
Q psy5743 399 EIDFNNIRFSYPSRP-DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLY--DPQNGKILIDGVDIKELDPMYLR 475 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~-~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~--~p~~G~I~idg~~i~~~~~~~lr 475 (644)
.|+++|++|.|++.. ++++|+|+||++++||+++|+||||||||||+++|+|++ +|++|+|.+||.++. ..+|
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~~~~ 78 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQ 78 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----HHhh
Confidence 489999999997421 257999999999999999999999999999999999986 489999999999886 5678
Q ss_pred cceEEEecCCCCCcc-cHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHH
Q psy5743 476 SQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIAR 554 (644)
Q Consensus 476 ~~i~~V~Q~~~Lf~g-TIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLAR 554 (644)
++++|++|++.+|.+ |++||+.++.. ++ .||||||||++|||
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~~-------------~~------------------------~LSgGe~qrv~la~ 121 (192)
T cd03232 79 RSTGYVEQQDVHSPNLTVREALRFSAL-------------LR------------------------GLSVEQRKRLTIGV 121 (192)
T ss_pred hceEEecccCccccCCcHHHHHHHHHH-------------Hh------------------------cCCHHHhHHHHHHH
Confidence 899999999998885 99999986510 00 89999999999999
Q ss_pred HHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchH--HhhcCEEEEEeC-CeEEEec
Q psy5743 555 ALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLST--IRKSNQICVLDK-GKIVEIG 621 (644)
Q Consensus 555 All~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~--i~~aD~Iivl~~-G~ive~G 621 (644)
|++++|+++||||||++||.++...+.+.|++.. +++|+|+|||+++. ...||+|++|++ |++++.|
T Consensus 122 al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 122 ELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred HHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 9999999999999999999999999999998875 37899999999983 578999999999 9999865
No 250
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=8.2e-43 Score=331.17 Aligned_cols=164 Identities=37% Similarity=0.539 Sum_probs=152.3
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
|+++|++++|++ ++++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|. ++++
T Consensus 1 i~~~~~~~~~~~--~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-----------~~i~ 67 (166)
T cd03223 1 IELENLSLATPD--GRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-----------EDLL 67 (166)
T ss_pred CEEEEEEEEcCC--CCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-----------ceEE
Confidence 578999999964 256999999999999999999999999999999999999999999999983 5899
Q ss_pred EEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccC
Q psy5743 480 SVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKK 559 (644)
Q Consensus 480 ~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~ 559 (644)
|++|++.++++|++||+.++ ....||||||||++||||++++
T Consensus 68 ~~~q~~~~~~~tv~~nl~~~--------------------------------------~~~~LS~G~~~rv~laral~~~ 109 (166)
T cd03223 68 FLPQRPYLPLGTLREQLIYP--------------------------------------WDDVLSGGEQQRLAFARLLLHK 109 (166)
T ss_pred EECCCCccccccHHHHhhcc--------------------------------------CCCCCCHHHHHHHHHHHHHHcC
Confidence 99999999999999999652 2468999999999999999999
Q ss_pred CCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCe
Q psy5743 560 SKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGK 616 (644)
Q Consensus 560 p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ 616 (644)
|+++||||||++||.++.+.+.+.|.+. ++|+|+|||+++....||+|++|++|.
T Consensus 110 p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~~~d~i~~l~~~~ 164 (166)
T cd03223 110 PKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWKFHDRVLDLDGEG 164 (166)
T ss_pred CCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHhhCCEEEEEcCCC
Confidence 9999999999999999999999999887 699999999999999999999998864
No 251
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=3.9e-43 Score=356.25 Aligned_cols=218 Identities=22% Similarity=0.355 Sum_probs=171.6
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccC--CCCCcEEEECCccCCCCChHHHh-c
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLY--DPQNGKILIDGVDIKELDPMYLR-S 476 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~--~p~~G~I~idg~~i~~~~~~~lr-~ 476 (644)
|+++|++++|++ +++|+|+||+|++|++++|+|+||||||||+++|+|++ +|++|+|.+||.++..+++...+ +
T Consensus 2 i~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (248)
T PRK09580 2 LSIKDLHVSVED---KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGE 78 (248)
T ss_pred eEEEEEEEEeCC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhc
Confidence 789999999973 46999999999999999999999999999999999994 79999999999999988877665 5
Q ss_pred ceEEEecCCCCCcc-cHHHHHhcCCCC------CCCCCHHHHHHHHHHHhhccchh--hhhcCccccccCCCCCCChhHH
Q psy5743 477 QIGSVSQEPTLFSG-TIYENILYGVND------SSSVTKSDIIHAAKEANAYGFVI--DFKNGFDTIVGERGIMLSGGQK 547 (644)
Q Consensus 477 ~i~~V~Q~~~Lf~g-TIreNI~~g~~~------~~~~~~~~i~~a~~~a~l~~~i~--~lp~Gl~T~ige~G~~LSGGQk 547 (644)
.++|++|++.++.. |..+|+.+..+. ....+..++.+.++ +.++ .+|.++.+... ...||||||
T Consensus 79 ~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~l~~~~l~~~~~~~~~--~~~LS~G~~ 151 (248)
T PRK09580 79 GIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLME-----EKIALLKMPEDLLTRSV--NVGFSGGEK 151 (248)
T ss_pred ceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHH-----HHHHHcCCChhhcccCC--CCCCCHHHH
Confidence 79999999987764 444443321100 00011111111111 1111 24444433321 237999999
Q ss_pred HHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC-CceEEEEccCchHHhh--cCEEEEEeCCeEEEecChh
Q psy5743 548 QRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE-GKTVLTIAHRLSTIRK--SNQICVLDKGKIVEIGSYA 624 (644)
Q Consensus 548 QRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~-~~TvI~IaHrl~~i~~--aD~Iivl~~G~ive~Gt~~ 624 (644)
||++||||++++|+||||||||++||.++...+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++
T Consensus 152 qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~~~ 231 (248)
T PRK09580 152 KRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFT 231 (248)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCCHH
Confidence 999999999999999999999999999999999999988754 6899999999999987 8999999999999999998
Q ss_pred HHh
Q psy5743 625 HLI 627 (644)
Q Consensus 625 eLl 627 (644)
+..
T Consensus 232 ~~~ 234 (248)
T PRK09580 232 LVK 234 (248)
T ss_pred HHH
Confidence 553
No 252
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=8.5e-43 Score=339.83 Aligned_cols=183 Identities=31% Similarity=0.522 Sum_probs=163.2
Q ss_pred cEEEEEEEEEcCCC---CCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccC--CCCCcEEEECCccCCCCChHH
Q psy5743 399 EIDFNNIRFSYPSR---PDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLY--DPQNGKILIDGVDIKELDPMY 473 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~---~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~--~p~~G~I~idg~~i~~~~~~~ 473 (644)
.|+++||+|+|++. .++++|+|+||++++||+++|+||||||||||+++|+|++ +|++|+|.+||+++.. ..
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~---~~ 79 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RS 79 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch---Hh
Confidence 48999999999741 1357999999999999999999999999999999999999 9999999999998875 36
Q ss_pred HhcceEEEecCCCCCc-ccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHH
Q psy5743 474 LRSQIGSVSQEPTLFS-GTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAI 552 (644)
Q Consensus 474 lr~~i~~V~Q~~~Lf~-gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaL 552 (644)
+++.++|++|++.+|. .|++||+.++.. . . .||||||||++|
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~~i~~~~~----~--------------~-------------------~LS~G~~qrv~l 122 (194)
T cd03213 80 FRKIIGYVPQDDILHPTLTVRETLMFAAK----L--------------R-------------------GLSGGERKRVSI 122 (194)
T ss_pred hhheEEEccCcccCCCCCcHHHHHHHHHH----h--------------c-------------------cCCHHHHHHHHH
Confidence 7889999999999987 499999976411 0 0 899999999999
Q ss_pred HHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCch-HH-hhcCEEEEEeCCeEEEec
Q psy5743 553 ARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLS-TI-RKSNQICVLDKGKIVEIG 621 (644)
Q Consensus 553 ARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~-~i-~~aD~Iivl~~G~ive~G 621 (644)
|||++++|+++||||||++||..+.+.+.+.|+++. +++|+|+|||+++ .+ ..||+|++|++|++++.|
T Consensus 123 aral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 123 ALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred HHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 999999999999999999999999999999998875 4789999999996 44 569999999999998764
No 253
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=7.9e-43 Score=336.75 Aligned_cols=172 Identities=28% Similarity=0.506 Sum_probs=157.3
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCCh-HHHhcc
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDP-MYLRSQ 477 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~-~~lr~~ 477 (644)
-|+++|++++| +|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...++ ..+|+.
T Consensus 4 ~l~~~~l~~~~-------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 76 (182)
T cd03215 4 VLEVRGLSVKG-------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAG 76 (182)
T ss_pred EEEEeccEEEe-------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCC
Confidence 38999999998 7999999999999999999999999999999999999999999999999998874 456788
Q ss_pred eEEEecCC----CCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHH
Q psy5743 478 IGSVSQEP----TLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIA 553 (644)
Q Consensus 478 i~~V~Q~~----~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLA 553 (644)
++|++|++ ..++.|++||+.++. . ||||||||++||
T Consensus 77 i~~~~q~~~~~~~~~~~t~~e~l~~~~-----~-----------------------------------LS~G~~qrl~la 116 (182)
T cd03215 77 IAYVPEDRKREGLVLDLSVAENIALSS-----L-----------------------------------LSGGNQQKVVLA 116 (182)
T ss_pred eEEecCCcccCcccCCCcHHHHHHHHh-----h-----------------------------------cCHHHHHHHHHH
Confidence 99999995 345589999997651 0 999999999999
Q ss_pred HHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhh-cCEEEEEeCCeE
Q psy5743 554 RALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIRK-SNQICVLDKGKI 617 (644)
Q Consensus 554 RAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~~-aD~Iivl~~G~i 617 (644)
||++++|+++||||||++||+++.+.+.+.|.++. +++|+|++||+++.+.. ||+|++|++|++
T Consensus 117 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 117 RWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred HHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 99999999999999999999999999999998874 47899999999998866 999999999975
No 254
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1e-42 Score=345.08 Aligned_cols=203 Identities=28% Similarity=0.459 Sum_probs=169.2
Q ss_pred EEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCC----hHHHhc
Q psy5743 401 DFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELD----PMYLRS 476 (644)
Q Consensus 401 ~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~----~~~lr~ 476 (644)
++ |++++|++ ..+ |+||++++ |+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...+|+
T Consensus 3 ~~-~l~~~~~~---~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 75 (214)
T cd03297 3 CV-DIEKRLPD---FTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQR 75 (214)
T ss_pred ee-eeeEecCC---eee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhh
Confidence 45 89999974 234 99999999 999999999999999999999999999999999999986432 345688
Q ss_pred ceEEEecCCCCCc-ccHHHHHhcCCCCCC-CCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHH
Q psy5743 477 QIGSVSQEPTLFS-GTIYENILYGVNDSS-SVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIAR 554 (644)
Q Consensus 477 ~i~~V~Q~~~Lf~-gTIreNI~~g~~~~~-~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLAR 554 (644)
.++||+|++.+|. .|++||+.++.+... ...++++.++++.. |++.........||||||||++|||
T Consensus 76 ~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~~qrv~la~ 144 (214)
T cd03297 76 KIGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLL-----------GLDHLLNRYPAQLSGGEKQRVALAR 144 (214)
T ss_pred cEEEEecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHc-----------CCHhHhhcCcccCCHHHHHHHHHHH
Confidence 9999999999996 599999998643200 01122333344433 4444455667899999999999999
Q ss_pred HHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEEEeCCeEEEec
Q psy5743 555 ALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIG 621 (644)
Q Consensus 555 All~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~G 621 (644)
|++++|+++||||||++||+++.+.+.+.|.++.+ ++|+|+|||+++.+. .||+|++|++|++++.|
T Consensus 145 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 145 ALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999999988753 789999999999884 69999999999999876
No 255
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=2e-42 Score=351.75 Aligned_cols=215 Identities=25% Similarity=0.366 Sum_probs=178.2
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhcc--CCCCCcEEEECCccCCCCChHHHhc
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRL--YDPQNGKILIDGVDIKELDPMYLRS 476 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~--~~p~~G~I~idg~~i~~~~~~~lr~ 476 (644)
-|+++|++++|++ +++|+|+||++++||++||+|+||||||||+++|+|+ ++|++|+|.++|.++..+++..+++
T Consensus 7 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 83 (252)
T CHL00131 7 ILEIKNLHASVNE---NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAH 83 (252)
T ss_pred eEEEEeEEEEeCC---EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhe
Confidence 4899999999963 4699999999999999999999999999999999998 6899999999999999988777665
Q ss_pred -ceEEEecCCCCCcc-cHHHHHhcCCCCC------CCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCC-CCC
Q psy5743 477 -QIGSVSQEPTLFSG-TIYENILYGVNDS------SSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGI-MLS 543 (644)
Q Consensus 477 -~i~~V~Q~~~Lf~g-TIreNI~~g~~~~------~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~-~LS 543 (644)
.+++++|++.+|.+ |+++|+.++.... ...+ .+++.++++..++.+ +.+..... .||
T Consensus 84 ~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~~LS 153 (252)
T CHL00131 84 LGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDP----------SFLSRNVNEGFS 153 (252)
T ss_pred eeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCch----------hhhccccccCCC
Confidence 48999999999986 7999987652100 0011 123344455444421 11223232 599
Q ss_pred hhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhh--cCEEEEEeCCeEEEe
Q psy5743 544 GGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIRK--SNQICVLDKGKIVEI 620 (644)
Q Consensus 544 GGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~~--aD~Iivl~~G~ive~ 620 (644)
||||||++||||++++|+++||||||++||..+...+.+.|.++. +++|+|+|||+++.+.. ||+|++|++|++++.
T Consensus 154 gG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~ 233 (252)
T CHL00131 154 GGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKT 233 (252)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEe
Confidence 999999999999999999999999999999999999999998875 47999999999999875 899999999999999
Q ss_pred cChhHH
Q psy5743 621 GSYAHL 626 (644)
Q Consensus 621 Gt~~eL 626 (644)
|+++++
T Consensus 234 ~~~~~~ 239 (252)
T CHL00131 234 GDAELA 239 (252)
T ss_pred cChhhh
Confidence 999844
No 256
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=1.5e-42 Score=357.64 Aligned_cols=216 Identities=31% Similarity=0.485 Sum_probs=190.2
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
.|+++|++.+|++ +..+|+||||+|++|+++|++||||||||||+|+|+|+..|++|+|.++|.|...- ...+|+++
T Consensus 4 ~i~~~~l~k~~~~--~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~i 80 (293)
T COG1131 4 VIEVRNLTKKYGG--DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRI 80 (293)
T ss_pred eeeecceEEEeCC--CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhhe
Confidence 4789999999963 35799999999999999999999999999999999999999999999999988776 78899999
Q ss_pred EEEecCCCCCc-ccHHHHHhcCCCCCC---CCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHH
Q psy5743 479 GSVSQEPTLFS-GTIYENILYGVNDSS---SVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIAR 554 (644)
Q Consensus 479 ~~V~Q~~~Lf~-gTIreNI~~g~~~~~---~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLAR 554 (644)
|||||+|.++. -|++||+.|...-.. ..+++++.+.++..++.+.- ...-..||+|||||++||+
T Consensus 81 gy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~lS~G~kqrl~ia~ 149 (293)
T COG1131 81 GYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKA-----------NKKVRTLSGGMKQRLSIAL 149 (293)
T ss_pred EEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhh-----------CcchhhcCHHHHHHHHHHH
Confidence 99999999886 499999998543211 12356788888888875411 3345679999999999999
Q ss_pred HHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC-C-ceEEEEccCchHHhh-cCEEEEEeCCeEEEecChhHHhc
Q psy5743 555 ALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE-G-KTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLIK 628 (644)
Q Consensus 555 All~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~-~-~TvI~IaHrl~~i~~-aD~Iivl~~G~ive~Gt~~eLl~ 628 (644)
||+.+|++||||||||+||+.+...+.+.|+++.+ + +|+++.||.++.+.. ||+|++|++|+++..|+.+++.+
T Consensus 150 aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~ 226 (293)
T COG1131 150 ALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKE 226 (293)
T ss_pred HHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHH
Confidence 99999999999999999999999999999999876 3 699999999999977 99999999999999999999764
No 257
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-42 Score=356.08 Aligned_cols=212 Identities=26% Similarity=0.413 Sum_probs=175.8
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHh-cc
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLR-SQ 477 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr-~~ 477 (644)
.|+++||+++|++ ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++.. ..+ +.
T Consensus 6 ~l~~~~l~~~~~~--~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~----~~~~~~ 79 (272)
T PRK15056 6 GIVVNDVTVTWRN--GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ----ALQKNL 79 (272)
T ss_pred eEEEEeEEEEecC--CcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH----hhccce
Confidence 4899999999963 3569999999999999999999999999999999999999999999999998752 233 46
Q ss_pred eEEEecCCCC---CcccHHHHHhcCCCC-------CCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHH
Q psy5743 478 IGSVSQEPTL---FSGTIYENILYGVND-------SSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQK 547 (644)
Q Consensus 478 i~~V~Q~~~L---f~gTIreNI~~g~~~-------~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQk 547 (644)
++|++|++.+ +..++++|+.++... ....+++++.++++..++.++. ++. ...||||||
T Consensus 80 i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-------~~~----~~~LSgG~~ 148 (272)
T PRK15056 80 VAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFR-------HRQ----IGELSGGQK 148 (272)
T ss_pred EEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHh-------cCC----cccCCHHHH
Confidence 9999999865 566899999764210 0011234455666666664432 333 346999999
Q ss_pred HHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhH
Q psy5743 548 QRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAH 625 (644)
Q Consensus 548 QRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~e 625 (644)
||++||||++++|++|||||||++||+.+.+.+.+.|.++. +++|+|+|||+++.+ ..||+++.+ +|++++.|++++
T Consensus 149 qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~ 227 (272)
T PRK15056 149 KRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTET 227 (272)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHh
Confidence 99999999999999999999999999999999999998875 378999999999887 569999777 899999999999
Q ss_pred Hhc
Q psy5743 626 LIK 628 (644)
Q Consensus 626 Ll~ 628 (644)
+..
T Consensus 228 ~~~ 230 (272)
T PRK15056 228 TFT 230 (272)
T ss_pred ccC
Confidence 864
No 258
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=3.7e-42 Score=348.30 Aligned_cols=208 Identities=28% Similarity=0.452 Sum_probs=180.5
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
-|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +..+
T Consensus 4 ~l~~~~l~~~~~~---~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-----------~~~i 69 (251)
T PRK09544 4 LVSLENVSVSFGQ---RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----------KLRI 69 (251)
T ss_pred EEEEeceEEEECC---ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-----------ccCE
Confidence 3899999999963 4699999999999999999999999999999999999999999999987 3479
Q ss_pred EEEecCCCCCc---ccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHH
Q psy5743 479 GSVSQEPTLFS---GTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARA 555 (644)
Q Consensus 479 ~~V~Q~~~Lf~---gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARA 555 (644)
+|++|++.++. .|+++|+.+. +. .+++++.++++..++.+++.. ....||||||||++||||
T Consensus 70 ~~v~q~~~~~~~l~~~~~~~~~~~-~~---~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgGq~qrv~lara 134 (251)
T PRK09544 70 GYVPQKLYLDTTLPLTVNRFLRLR-PG---TKKEDILPALKRVQAGHLIDA-----------PMQKLSGGETQRVLLARA 134 (251)
T ss_pred EEeccccccccccChhHHHHHhcc-cc---ccHHHHHHHHHHcCChHHHhC-----------ChhhCCHHHHHHHHHHHH
Confidence 99999998865 4899998764 22 457788888888887655432 346899999999999999
Q ss_pred HccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhHHhcCCCc
Q psy5743 556 LIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHLIKNPNS 632 (644)
Q Consensus 556 ll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~eLl~~~~~ 632 (644)
++++|+++||||||++||+.+...+.+.|.++.+ ++|+|+|||+++.+ ..||+|++|++ ++++.|+++++.. ..
T Consensus 135 l~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~~~--~~ 211 (251)
T PRK09544 135 LLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVVSL--HP 211 (251)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHHhC--CH
Confidence 9999999999999999999999999999988753 78999999999998 55999999965 7999999999874 35
Q ss_pred HHHHHH
Q psy5743 633 MFNKLM 638 (644)
Q Consensus 633 ~y~~l~ 638 (644)
.|.+++
T Consensus 212 ~~~~~~ 217 (251)
T PRK09544 212 EFISMF 217 (251)
T ss_pred HHHHHh
Confidence 666665
No 259
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=2.6e-42 Score=338.15 Aligned_cols=186 Identities=34% Similarity=0.493 Sum_probs=163.5
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhcc--CCCCCcEEEECCccCCCCChHHH-hc
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRL--YDPQNGKILIDGVDIKELDPMYL-RS 476 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~--~~p~~G~I~idg~~i~~~~~~~l-r~ 476 (644)
++++|++++|++ +++++|+||++++||+++|+|+||||||||+++|+|+ ++|++|+|.+||+++...+.... |.
T Consensus 1 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~ 77 (200)
T cd03217 1 LEIKDLHVSVGG---KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARL 77 (200)
T ss_pred CeEEEEEEEeCC---EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhC
Confidence 478999999963 4699999999999999999999999999999999999 58999999999999999887665 45
Q ss_pred ceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHH
Q psy5743 477 QIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARAL 556 (644)
Q Consensus 477 ~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAl 556 (644)
.++|++|++.+|.++..+|+. .. ....||||||||++||||+
T Consensus 78 ~i~~v~q~~~~~~~~~~~~~l---------------------------~~-----------~~~~LS~G~~qrv~laral 119 (200)
T cd03217 78 GIFLAFQYPPEIPGVKNADFL---------------------------RY-----------VNEGFSGGEKKRNEILQLL 119 (200)
T ss_pred cEEEeecChhhccCccHHHHH---------------------------hh-----------ccccCCHHHHHHHHHHHHH
Confidence 699999999998864333332 00 1147999999999999999
Q ss_pred ccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC-CceEEEEccCchHHh--hcCEEEEEeCCeEEEecChhHHh
Q psy5743 557 IKKSKILLLDEATSALDAENEYLVQSAIEKLIE-GKTVLTIAHRLSTIR--KSNQICVLDKGKIVEIGSYAHLI 627 (644)
Q Consensus 557 l~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~-~~TvI~IaHrl~~i~--~aD~Iivl~~G~ive~Gt~~eLl 627 (644)
+++|+++||||||++||+.+...+.+.|.++.+ ++|+|++||+++.+. .||+|++|++|++++.| +.|+.
T Consensus 120 ~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~-~~~~~ 192 (200)
T cd03217 120 LLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSG-DKELA 192 (200)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEc-cHHHH
Confidence 999999999999999999999999999988754 789999999999998 69999999999999999 55554
No 260
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=2.4e-42 Score=346.13 Aligned_cols=210 Identities=29% Similarity=0.474 Sum_probs=172.0
Q ss_pred cccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCC----CCcEEEECCccCCCCChHHHhcceEEEecCCC-CCc--
Q psy5743 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDP----QNGKILIDGVDIKELDPMYLRSQIGSVSQEPT-LFS-- 489 (644)
Q Consensus 417 vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p----~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~-Lf~-- 489 (644)
+++|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|+++... +..++.++||+|++. .|.
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~~~ 78 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL--SIRGRHIATIMQNPRTAFNPL 78 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh--hhhhheeEEEecCchhhcCcc
Confidence 57899999999999999999999999999999999999 899999999998754 223468999999995 444
Q ss_pred ccHHHHHhcCCCCCC---CCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEee
Q psy5743 490 GTIYENILYGVNDSS---SVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLD 566 (644)
Q Consensus 490 gTIreNI~~g~~~~~---~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLD 566 (644)
-|+.||+.+...... ...++++.++++..++.+ + ++........||||||||++||||++++|++||||
T Consensus 79 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~-~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLD 150 (230)
T TIGR02770 79 FTMGNHAIETLRSLGKLSKQARALILEALEAVGLPD-------P-EEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIAD 150 (230)
T ss_pred cCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCc-------h-HHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 589999865321100 012334566666666532 1 23445667789999999999999999999999999
Q ss_pred cccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHHhcCCCcHHHH
Q psy5743 567 EATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHLIKNPNSMFNK 636 (644)
Q Consensus 567 EaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eLl~~~~~~y~~ 636 (644)
||||+||..+.+.+.+.|.++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++...+...|.+
T Consensus 151 EPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~ 223 (230)
T TIGR02770 151 EPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNPKHETTR 223 (230)
T ss_pred CCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcCCHHHH
Confidence 99999999999999999998753 789999999999985 69999999999999999999998654444443
No 261
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=6.4e-43 Score=313.75 Aligned_cols=195 Identities=34% Similarity=0.531 Sum_probs=173.5
Q ss_pred CCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccH
Q psy5743 413 PDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTI 492 (644)
Q Consensus 413 ~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTI 492 (644)
.+.++|+|+||++.+||++||+||||||||||+|.++-+.+|++|++++.|.|++.++++.+|.+|+|+.|.|-||.+||
T Consensus 14 ~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tV 93 (223)
T COG4619 14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTV 93 (223)
T ss_pred CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccch
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCC-CCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCC
Q psy5743 493 YENILYGVND-SSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSA 571 (644)
Q Consensus 493 reNI~~g~~~-~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSa 571 (644)
.||+-|--.- ....+.+...+.++.+++.+ +.+..+-.+||||+||||||+|-|---|+||+|||+|||
T Consensus 94 eDNlifP~~~r~rr~dr~aa~~llar~~l~~----------~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsA 163 (223)
T COG4619 94 EDNLIFPWQIRNRRPDRAAALDLLARFALPD----------SILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSA 163 (223)
T ss_pred hhccccchHHhccCCChHHHHHHHHHcCCch----------hhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhh
Confidence 9999875310 11345666666666666543 445566788999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHc--CCceEEEEccCchH-HhhcCEEEEEeCCeE
Q psy5743 572 LDAENEYLVQSAIEKLI--EGKTVLTIAHRLST-IRKSNQICVLDKGKI 617 (644)
Q Consensus 572 LD~~~e~~i~~~l~~~~--~~~TvI~IaHrl~~-i~~aD~Iivl~~G~i 617 (644)
||..+.+.|.+-|.++. ++..++-|||+... +++||+++.+..|++
T Consensus 164 LD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~ 212 (223)
T COG4619 164 LDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHA 212 (223)
T ss_pred cChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCcc
Confidence 99999999999998876 47799999999998 999999999999986
No 262
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=6.8e-42 Score=346.46 Aligned_cols=218 Identities=23% Similarity=0.411 Sum_probs=180.0
Q ss_pred EEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEE
Q psy5743 401 DFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGS 480 (644)
Q Consensus 401 ~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~ 480 (644)
+++||++. .+|+|+||++++||+++|+|+||||||||+++|+|+++ .+|+|.+||.++...+...+++.++|
T Consensus 2 ~~~~l~~~-------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~i~~ 73 (248)
T PRK03695 2 QLNDVAVS-------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAAELARHRAY 73 (248)
T ss_pred cccccchh-------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecCcCCHHHHhhheEE
Confidence 56788774 16999999999999999999999999999999999995 59999999999999888888889999
Q ss_pred EecCCC-CCcccHHHHHhcCCCCCCCC--CHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHc
Q psy5743 481 VSQEPT-LFSGTIYENILYGVNDSSSV--TKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALI 557 (644)
Q Consensus 481 V~Q~~~-Lf~gTIreNI~~g~~~~~~~--~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll 557 (644)
++|++. .+..|+++|+.++.+..... .++++.++++..++ +.........||||||||++||||++
T Consensus 74 v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~~qrv~la~al~ 142 (248)
T PRK03695 74 LSQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGL-----------DDKLGRSVNQLSGGEWQRVRLAAVVL 142 (248)
T ss_pred ecccCccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCC-----------HhHhcCCcccCCHHHHHHHHHHHHHh
Confidence 999985 55789999999874321101 12334445555443 33334456789999999999999999
Q ss_pred c-------CCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhHHhc
Q psy5743 558 K-------KSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHLIK 628 (644)
Q Consensus 558 ~-------~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~eLl~ 628 (644)
. +|+++||||||++||+.+...+.+.|.++. +++|+|++||+++.+ +.||+|++|++|++++.|+++++..
T Consensus 143 ~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 222 (248)
T PRK03695 143 QVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLT 222 (248)
T ss_pred ccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhC
Confidence 7 679999999999999999999999998875 478999999999965 6699999999999999999999864
Q ss_pred CCCcHHHHHHH
Q psy5743 629 NPNSMFNKLMK 639 (644)
Q Consensus 629 ~~~~~y~~l~~ 639 (644)
. ....+.+.
T Consensus 223 ~--~~~~~~~~ 231 (248)
T PRK03695 223 P--ENLAQVFG 231 (248)
T ss_pred c--hHHHHHhC
Confidence 3 34455543
No 263
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=3.2e-42 Score=339.55 Aligned_cols=197 Identities=29% Similarity=0.468 Sum_probs=165.5
Q ss_pred EEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCCh----HHHhcc
Q psy5743 402 FNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDP----MYLRSQ 477 (644)
Q Consensus 402 ~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~----~~lr~~ 477 (644)
++||+++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++. ...++.
T Consensus 1 i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 77 (206)
T TIGR03608 1 LKNISKKFGD---KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREK 77 (206)
T ss_pred CcceEEEECC---EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhC
Confidence 4789999963 469999999999999999999999999999999999999999999999999765542 245778
Q ss_pred eEEEecCCCCCc-ccHHHHHhcCCCCCC---CCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHH
Q psy5743 478 IGSVSQEPTLFS-GTIYENILYGVNDSS---SVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIA 553 (644)
Q Consensus 478 i~~V~Q~~~Lf~-gTIreNI~~g~~~~~---~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLA 553 (644)
++|++|++.+|. .|++||+.++..... ...++++.++++..++.++ ......+||||||||++||
T Consensus 78 i~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~lS~G~~qr~~la 146 (206)
T TIGR03608 78 LGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLK-----------LKQKIYELSGGEQQRVALA 146 (206)
T ss_pred eeEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhh-----------hcCChhhCCHHHHHHHHHH
Confidence 999999999997 699999998532100 0123445556666655332 2334567999999999999
Q ss_pred HHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC-CceEEEEccCchHHhhcCEEEEE
Q psy5743 554 RALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE-GKTVLTIAHRLSTIRKSNQICVL 612 (644)
Q Consensus 554 RAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~-~~TvI~IaHrl~~i~~aD~Iivl 612 (644)
||++++|++|||||||++||+++.+.+.+.|+++.+ ++|+|++||+++.+..||+|++|
T Consensus 147 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 147 RAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred HHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEeC
Confidence 999999999999999999999999999999988753 78999999999999999999986
No 264
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=2.9e-42 Score=332.21 Aligned_cols=177 Identities=37% Similarity=0.581 Sum_probs=158.8
Q ss_pred EEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEE
Q psy5743 401 DFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGS 480 (644)
Q Consensus 401 ~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~ 480 (644)
+++||+++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+...+++.++|
T Consensus 1 ~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~ 77 (180)
T cd03214 1 EVENLSVGYGG---RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAY 77 (180)
T ss_pred CeeEEEEEECC---eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhH
Confidence 47899999963 469999999999999999999999999999999999999999999999999999998889999999
Q ss_pred EecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCC
Q psy5743 481 VSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKS 560 (644)
Q Consensus 481 V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p 560 (644)
++| +++..++.+++. .....||||||||++||||++++|
T Consensus 78 ~~q------------------------------~l~~~gl~~~~~-----------~~~~~LS~G~~qrl~laral~~~p 116 (180)
T cd03214 78 VPQ------------------------------ALELLGLAHLAD-----------RPFNELSGGERQRVLLARALAQEP 116 (180)
T ss_pred HHH------------------------------HHHHcCCHhHhc-----------CCcccCCHHHHHHHHHHHHHhcCC
Confidence 999 344455443322 345789999999999999999999
Q ss_pred CEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHH-hhcCEEEEEeCCeEEEec
Q psy5743 561 KILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIG 621 (644)
Q Consensus 561 ~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~G 621 (644)
+++||||||++||+++...+.+.|.++.+ ++|+|++||+++.+ +.||++++|++|++++.|
T Consensus 117 ~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 117 PILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999988755 68999999999997 669999999999998754
No 265
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.6e-42 Score=388.63 Aligned_cols=228 Identities=30% Similarity=0.442 Sum_probs=186.2
Q ss_pred cEEEEEEEEEcCCCC--------CCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCC
Q psy5743 399 EIDFNNIRFSYPSRP--------DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELD 470 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~--------~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~ 470 (644)
-++++|++++|+.+. ...+|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++..++
T Consensus 313 ~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~ 392 (623)
T PRK10261 313 ILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLS 392 (623)
T ss_pred eEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCC
Confidence 489999999996311 246899999999999999999999999999999999999999999999999998776
Q ss_pred hH---HHhcceEEEecCCC--CCc-ccHHHHHhcCCC--CC--CCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCC
Q psy5743 471 PM---YLRSQIGSVSQEPT--LFS-GTIYENILYGVN--DS--SSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGI 540 (644)
Q Consensus 471 ~~---~lr~~i~~V~Q~~~--Lf~-gTIreNI~~g~~--~~--~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~ 540 (644)
.. .+|+.|+||+|+++ ++. -|+.||+.++.. .. ....++++.++++..++.+ ........
T Consensus 393 ~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~----------~~~~~~~~ 462 (623)
T PRK10261 393 PGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLP----------EHAWRYPH 462 (623)
T ss_pred HHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCH----------HHhhCCcc
Confidence 53 46778999999984 664 599999986421 00 0011234555555555531 11223345
Q ss_pred CCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEEEeCCeE
Q psy5743 541 MLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIR-KSNQICVLDKGKI 617 (644)
Q Consensus 541 ~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~-~aD~Iivl~~G~i 617 (644)
.||||||||++|||||+.+|++||||||||+||..+...+.+.|+++.+ +.|+|+|||+++.+. .||+|++|++|+|
T Consensus 463 ~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~i 542 (623)
T PRK10261 463 EFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQI 542 (623)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 7999999999999999999999999999999999999999999988753 689999999999985 4999999999999
Q ss_pred EEecChhHHhcCCCcHHHH
Q psy5743 618 VEIGSYAHLIKNPNSMFNK 636 (644)
Q Consensus 618 ve~Gt~~eLl~~~~~~y~~ 636 (644)
++.|+.+++..++...|.+
T Consensus 543 v~~g~~~~i~~~p~~~~~~ 561 (623)
T PRK10261 543 VEIGPRRAVFENPQHPYTR 561 (623)
T ss_pred EEecCHHHHhcCCCCHHHH
Confidence 9999999998754555644
No 266
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=8.6e-42 Score=365.86 Aligned_cols=231 Identities=31% Similarity=0.445 Sum_probs=190.3
Q ss_pred cEEEEEEEEEcCCC--------CCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCcc--CCC
Q psy5743 399 EIDFNNIRFSYPSR--------PDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVD--IKE 468 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~--------~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~--i~~ 468 (644)
-++++|++..|... ....+++||||++++||++||||+||||||||.++|+|+.+|++|+|.++|.| ++.
T Consensus 280 ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~ 359 (539)
T COG1123 280 LLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTG 359 (539)
T ss_pred eeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCccccccc
Confidence 47899999999841 13467999999999999999999999999999999999999999999999987 232
Q ss_pred CChHHHhcceEEEecCCCCC---cccHHHHHhcCCCCCC----CCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCC
Q psy5743 469 LDPMYLRSQIGSVSQEPTLF---SGTIYENILYGVNDSS----SVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIM 541 (644)
Q Consensus 469 ~~~~~lr~~i~~V~Q~~~Lf---~gTIreNI~~g~~~~~----~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~ 541 (644)
-+....|+.+-+|+|||+-. ..||+++|.---.... ...++++.+.++.+++.+. ........
T Consensus 360 ~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~----------~l~ryP~e 429 (539)
T COG1123 360 GELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPE----------FLDRYPHE 429 (539)
T ss_pred chhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHH----------HHhcCchh
Confidence 23456778999999999843 4799999873211000 1112345666677766531 23344568
Q ss_pred CChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHhh-cCEEEEEeCCeEE
Q psy5743 542 LSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIRK-SNQICVLDKGKIV 618 (644)
Q Consensus 542 LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~~-aD~Iivl~~G~iv 618 (644)
||||||||+||||||..+|+++|+|||||+||+.+...|.+.|.++.+ +-|.|+|||+++.++. ||||.||++|+||
T Consensus 430 lSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iV 509 (539)
T COG1123 430 LSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIV 509 (539)
T ss_pred cCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEE
Confidence 999999999999999999999999999999999999999999988764 6899999999999965 9999999999999
Q ss_pred EecChhHHhcCCCcHHHHHHH
Q psy5743 619 EIGSYAHLIKNPNSMFNKLMK 639 (644)
Q Consensus 619 e~Gt~~eLl~~~~~~y~~l~~ 639 (644)
|.|+.+++.+++...|.+...
T Consensus 510 E~G~~~~v~~~p~h~Ytr~L~ 530 (539)
T COG1123 510 EEGPTEKVFENPQHPYTRKLL 530 (539)
T ss_pred EeCCHHHHhcCCCChHHHHHH
Confidence 999999999987888887654
No 267
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=8.4e-42 Score=380.66 Aligned_cols=215 Identities=27% Similarity=0.434 Sum_probs=184.7
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHh-cc
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLR-SQ 477 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr-~~ 477 (644)
-|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...++ +.
T Consensus 11 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 87 (510)
T PRK15439 11 LLCARSISKQYSG---VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLG 87 (510)
T ss_pred eEEEEeEEEEeCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCC
Confidence 4999999999963 4699999999999999999999999999999999999999999999999999888777665 46
Q ss_pred eEEEecCCCCCcc-cHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHH
Q psy5743 478 IGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARAL 556 (644)
Q Consensus 478 i~~V~Q~~~Lf~g-TIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAl 556 (644)
++||+|++.+|.. |++||+.++... ....++++.++++..++.++ .......||||||||++|||||
T Consensus 88 i~~v~q~~~~~~~~tv~e~l~~~~~~-~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrv~la~aL 155 (510)
T PRK15439 88 IYLVPQEPLLFPNLSVKENILFGLPK-RQASMQKMKQLLAALGCQLD-----------LDSSAGSLEVADRQIVEILRGL 155 (510)
T ss_pred EEEEeccCccCCCCcHHHHhhccccc-chHHHHHHHHHHHHcCCCcc-----------ccCChhhCCHHHHHHHHHHHHH
Confidence 9999999998875 999999987432 11123455666666655332 2233457999999999999999
Q ss_pred ccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHHhc
Q psy5743 557 IKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHLIK 628 (644)
Q Consensus 557 l~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eLl~ 628 (644)
+++|++|||||||++||+.+...+.+.|+++. +++|+|+|||+++.+. .||+|++|++|++++.|+++++..
T Consensus 156 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (510)
T PRK15439 156 MRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLST 229 (510)
T ss_pred HcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCH
Confidence 99999999999999999999999999998874 4789999999999875 599999999999999999998754
No 268
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=6.4e-42 Score=342.88 Aligned_cols=194 Identities=35% Similarity=0.449 Sum_probs=161.4
Q ss_pred ccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCc-ccHHHHH
Q psy5743 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFS-GTIYENI 496 (644)
Q Consensus 418 L~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~-gTIreNI 496 (644)
|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+.. .+||+|++.+|. .|++||+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~-----~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPD-----RMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh-----heEEecCcccCCCCCHHHHH
Confidence 5799999999999999999999999999999999999999999999998775542 489999999998 6999999
Q ss_pred hcCCCC-CCCCCHH----HHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCC
Q psy5743 497 LYGVND-SSSVTKS----DIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSA 571 (644)
Q Consensus 497 ~~g~~~-~~~~~~~----~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSa 571 (644)
.++... ....+++ ++.++++..++. .........||||||||++||||++++|+++||||||++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~g 144 (230)
T TIGR01184 76 ALAVDRVLPDLSKSERRAIVEEHIALVGLT-----------EAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGA 144 (230)
T ss_pred HHHHHhcccCCCHHHHHHHHHHHHHHcCCH-----------HHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcC
Confidence 875210 0012332 234444444443 223344568999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHHh
Q psy5743 572 LDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHLI 627 (644)
Q Consensus 572 LD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eLl 627 (644)
||+.+.+.+.+.|.++.+ ++|+|+|||+++.+. .||+|++|++|++++.|+..+++
T Consensus 145 LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 203 (230)
T TIGR01184 145 LDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEVP 203 (230)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceecc
Confidence 999999999999988653 789999999999875 59999999999999999876653
No 269
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=1.6e-41 Score=321.37 Aligned_cols=159 Identities=34% Similarity=0.586 Sum_probs=148.0
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChH-HHhcce
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPM-YLRSQI 478 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~-~lr~~i 478 (644)
|+++|++++|++ .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+.. ..++++
T Consensus 1 l~~~~l~~~~~~---~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i 77 (163)
T cd03216 1 LELRGITKRFGG---VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGI 77 (163)
T ss_pred CEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCe
Confidence 578999999964 3699999999999999999999999999999999999999999999999999988764 467789
Q ss_pred EEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHcc
Q psy5743 479 GSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIK 558 (644)
Q Consensus 479 ~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~ 558 (644)
+|++| ||||||||++||||+++
T Consensus 78 ~~~~q----------------------------------------------------------LS~G~~qrl~laral~~ 99 (163)
T cd03216 78 AMVYQ----------------------------------------------------------LSVGERQMVEIARALAR 99 (163)
T ss_pred EEEEe----------------------------------------------------------cCHHHHHHHHHHHHHhc
Confidence 99999 99999999999999999
Q ss_pred CCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHh-hcCEEEEEeCCeEEE
Q psy5743 559 KSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIR-KSNQICVLDKGKIVE 619 (644)
Q Consensus 559 ~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive 619 (644)
+|++++|||||++||.++.+.+.+.|+++. +++|+|++||+++.+. .||++++|++|++++
T Consensus 100 ~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 100 NARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 999999999999999999999999998874 4789999999999775 599999999999975
No 270
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.5e-41 Score=332.99 Aligned_cols=195 Identities=28% Similarity=0.384 Sum_probs=165.7
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.. ....+|++++
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~-~~~~~~~~i~ 77 (200)
T PRK13540 2 LDVIELDFDYHD---QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK-DLCTYQKQLC 77 (200)
T ss_pred EEEEEEEEEeCC---eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcccc-CHHHHHhheE
Confidence 689999999963 469999999999999999999999999999999999999999999999999875 4567888999
Q ss_pred EEecCCCCC-cccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHcc
Q psy5743 480 SVSQEPTLF-SGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIK 558 (644)
Q Consensus 480 ~V~Q~~~Lf-~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~ 558 (644)
|++|++.++ ..|++||+.++... ..++.++.++++..++.+ ..+.++ ..||||||||++||||+++
T Consensus 78 ~~~q~~~~~~~~tv~~~~~~~~~~--~~~~~~~~~~l~~~~l~~-------~~~~~~----~~LS~G~~~rv~laral~~ 144 (200)
T PRK13540 78 FVGHRSGINPYLTLRENCLYDIHF--SPGAVGITELCRLFSLEH-------LIDYPC----GLLSSGQKRQVALLRLWMS 144 (200)
T ss_pred EeccccccCcCCCHHHHHHHHHhc--CcchHHHHHHHHHcCCch-------hhhCCh----hhcCHHHHHHHHHHHHHhc
Confidence 999999986 57999999986321 123345555555555432 223333 4699999999999999999
Q ss_pred CCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhhcCEEEE
Q psy5743 559 KSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIRKSNQICV 611 (644)
Q Consensus 559 ~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~~aD~Iiv 611 (644)
+|++|||||||++||..+...+.+.|.++. +++|+|++||+.+.+.+||.-++
T Consensus 145 ~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~d~~~~ 198 (200)
T PRK13540 145 KAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKADYEEY 198 (200)
T ss_pred CCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccccchhhc
Confidence 999999999999999999999999998863 57899999999999999997654
No 271
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=8.6e-42 Score=335.75 Aligned_cols=225 Identities=35% Similarity=0.547 Sum_probs=193.5
Q ss_pred cEEEEEEEEEcCCCCC---------------------CccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCc
Q psy5743 399 EIDFNNIRFSYPSRPD---------------------AVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNG 457 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~---------------------~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G 457 (644)
.|+++||+.-+..+++ ..-++|+||+|+.||+..|-|-||||||||++++.|+++|++|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 4788888777653221 1237899999999999999999999999999999999999999
Q ss_pred EEEECCccCCCCChHHHh----cceEEEecCCCCCc-ccHHHHHhcCCCCCCC---CCHHHHHHHHHHHhhccchhhhhc
Q psy5743 458 KILIDGVDIKELDPMYLR----SQIGSVSQEPTLFS-GTIYENILYGVNDSSS---VTKSDIIHAAKEANAYGFVIDFKN 529 (644)
Q Consensus 458 ~I~idg~~i~~~~~~~lr----~~i~~V~Q~~~Lf~-gTIreNI~~g~~~~~~---~~~~~i~~a~~~a~l~~~i~~lp~ 529 (644)
+|++||.|+..++.+++| +.+++|+|+.-||. -||.||..||-+-..- ..+++..++++.+|+++|-.+.|
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp- 162 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYP- 162 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCc-
Confidence 999999999999988874 46999999999886 7999999999753211 12345677889999988877766
Q ss_pred CccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchH-Hhhc
Q psy5743 530 GFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLST-IRKS 606 (644)
Q Consensus 530 Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~-i~~a 606 (644)
..||||++||+.|||||..||+||++|||+||||+--....++.|.++.+ .||+|+|||+|+. ++-.
T Consensus 163 ----------~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG 232 (386)
T COG4175 163 ----------NELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIG 232 (386)
T ss_pred ----------ccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhcc
Confidence 47999999999999999999999999999999999998899988876542 7999999999986 5889
Q ss_pred CEEEEEeCCeEEEecChhHHhcCCCcHH
Q psy5743 607 NQICVLDKGKIVEIGSYAHLIKNPNSMF 634 (644)
Q Consensus 607 D~Iivl~~G~ive~Gt~~eLl~~~~~~y 634 (644)
|||-.|++|+|++.||++|++.+|-..|
T Consensus 233 ~rIaimkdG~ivQ~Gtp~eIl~~PAndY 260 (386)
T COG4175 233 DRIAIMKDGEIVQVGTPEEILLNPANDY 260 (386)
T ss_pred ceEEEecCCeEEEeCCHHHHHcCccHHH
Confidence 9999999999999999999998765555
No 272
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=2.1e-41 Score=332.18 Aligned_cols=195 Identities=24% Similarity=0.341 Sum_probs=169.1
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
|+++|++++|++ +++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++...+ ..+|+.++
T Consensus 1 l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (201)
T cd03231 1 LEADELTCERDG---RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR-DSIARGLL 76 (201)
T ss_pred CEEEEEEEEeCC---ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccc-HHhhhheE
Confidence 478999999964 46899999999999999999999999999999999999999999999999987653 56788999
Q ss_pred EEecCCCCC-cccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHcc
Q psy5743 480 SVSQEPTLF-SGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIK 558 (644)
Q Consensus 480 ~V~Q~~~Lf-~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~ 558 (644)
|++|++.++ +.|++||+.+..+. .+++++.++++..++.++. ++ ....||||||||++||||+++
T Consensus 77 ~~~q~~~~~~~~tv~e~l~~~~~~---~~~~~~~~~l~~~~l~~~~-------~~----~~~~LS~G~~qrl~laral~~ 142 (201)
T cd03231 77 YLGHAPGIKTTLSVLENLRFWHAD---HSDEQVEEALARVGLNGFE-------DR----PVAQLSAGQQRRVALARLLLS 142 (201)
T ss_pred EeccccccCCCcCHHHHHHhhccc---ccHHHHHHHHHHcCChhhh-------cC----chhhCCHHHHHHHHHHHHHhc
Confidence 999999886 58999999987543 4577788888888875432 22 245799999999999999999
Q ss_pred CCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchH-HhhcCEEEEE
Q psy5743 559 KSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLST-IRKSNQICVL 612 (644)
Q Consensus 559 ~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~-i~~aD~Iivl 612 (644)
+|+++||||||++||+.+.+.+.+.|.+.. +++|+|+|||+... ...+|+++++
T Consensus 143 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 143 GRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 999999999999999999999999998764 47899999998665 5667888776
No 273
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.6e-41 Score=321.96 Aligned_cols=219 Identities=30% Similarity=0.461 Sum_probs=186.5
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHH-hcce
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYL-RSQI 478 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~l-r~~i 478 (644)
++++|++-.|.. ..+|++|||++++||+++++|++|+|||||++.|+|+.+|.+|+|.++|.|+....++.. |.-|
T Consensus 4 L~v~~l~~~YG~---~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi 80 (237)
T COG0410 4 LEVENLSAGYGK---IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGI 80 (237)
T ss_pred eeEEeEeecccc---eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCe
Confidence 789999999964 479999999999999999999999999999999999999999999999999999998877 4459
Q ss_pred EEEecCCCCCc-ccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHc
Q psy5743 479 GSVSQEPTLFS-GTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALI 557 (644)
Q Consensus 479 ~~V~Q~~~Lf~-gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll 557 (644)
+||||.-.+|. -||+||+.+|.-. ..+++-.+ ..+++..+-+| -+.......|.+|||||+|-+||||||.
T Consensus 81 ~~VPegR~iF~~LTVeENL~~g~~~---~~~~~~~~----~~~e~v~~lFP-~Lker~~~~aG~LSGGEQQMLAiaRALm 152 (237)
T COG0410 81 AYVPEGRRIFPRLTVEENLLLGAYA---RRDKEAQE----RDLEEVYELFP-RLKERRNQRAGTLSGGEQQMLAIARALM 152 (237)
T ss_pred EeCcccccchhhCcHHHHHhhhhhc---cccccccc----ccHHHHHHHCh-hHHHHhcCcccCCChHHHHHHHHHHHHh
Confidence 99999999997 5999999988422 11111100 00111122234 3555567889999999999999999999
Q ss_pred cCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhHHhcC
Q psy5743 558 KKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHLIKN 629 (644)
Q Consensus 558 ~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~eLl~~ 629 (644)
.+|++|+|||||.+|-+.--+.|.+.|+++.+ +.|+++|-++.... +-||+.|||++|+|+.+|+.+||.++
T Consensus 153 ~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~ 227 (237)
T COG0410 153 SRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLAD 227 (237)
T ss_pred cCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcC
Confidence 99999999999999999999999999999874 55999999998875 68999999999999999999999875
No 274
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.9e-41 Score=333.38 Aligned_cols=198 Identities=21% Similarity=0.339 Sum_probs=168.8
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
|+++|++++|++ +++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+ ..++++++
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~-~~~~~~~~ 77 (204)
T PRK13538 2 LEARNLACERDE---RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-DEYHQDLL 77 (204)
T ss_pred eEEEEEEEEECC---EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch-HHhhhheE
Confidence 689999999963 46999999999999999999999999999999999999999999999999987654 45778899
Q ss_pred EEecCCCCCc-ccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHcc
Q psy5743 480 SVSQEPTLFS-GTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIK 558 (644)
Q Consensus 480 ~V~Q~~~Lf~-gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~ 558 (644)
|++|++.++. .|++||+.++.+.....+++++.++++..++.++. + .....||||||||++||||+++
T Consensus 78 ~~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~-------~----~~~~~LS~G~~qrl~la~al~~ 146 (204)
T PRK13538 78 YLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFE-------D----VPVRQLSAGQQRRVALARLWLT 146 (204)
T ss_pred EeCCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHh-------h----CChhhcCHHHHHHHHHHHHHhc
Confidence 9999998886 69999998875321113456777788887765432 2 2345799999999999999999
Q ss_pred CCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhh-cCEEEEE
Q psy5743 559 KSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIRK-SNQICVL 612 (644)
Q Consensus 559 ~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~~-aD~Iivl 612 (644)
+|+++||||||++||+++...+.+.|.+.. +++|+|+|||+++.+.. .+|++++
T Consensus 147 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 147 RAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 999999999999999999999999998864 47899999999999954 5677666
No 275
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.5e-41 Score=337.55 Aligned_cols=231 Identities=28% Similarity=0.451 Sum_probs=187.3
Q ss_pred EEEEEEEEEcCCCC-CCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCC-C----CCcEEEECCccCCCCChHH
Q psy5743 400 IDFNNIRFSYPSRP-DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD-P----QNGKILIDGVDIKELDPMY 473 (644)
Q Consensus 400 I~~~~vsf~Y~~~~-~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~-p----~~G~I~idg~~i~~~~~~~ 473 (644)
++++|++.+|.... ...+++||||+|++||++||||+|||||||+.+.++|+++ | .+|+|.++|.|+-.++.+.
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 57899999997532 2468999999999999999999999999999999999998 4 6899999999999999886
Q ss_pred Hh----cceEEEecCCC-CCc------ccHHHHHhcCCCC-CCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCC
Q psy5743 474 LR----SQIGSVSQEPT-LFS------GTIYENILYGVND-SSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIM 541 (644)
Q Consensus 474 lr----~~i~~V~Q~~~-Lf~------gTIreNI~~g~~~-~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~ 541 (644)
+| +.|++|+|||. =|| .-+.|-+..-... ......++..+.++.+++.+-- ..+..-...
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~--------~~~~~YPhe 153 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPE--------RRLKSYPHE 153 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHH--------HHHhhCCcc
Confidence 43 36999999976 232 2244444432110 0001244677778888876521 112233468
Q ss_pred CChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHH-hhcCEEEEEeCCeEE
Q psy5743 542 LSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTI-RKSNQICVLDKGKIV 618 (644)
Q Consensus 542 LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i-~~aD~Iivl~~G~iv 618 (644)
||||||||+.||-|+..+|++||-||||+|||..+.++|.+.|+++.+ +.|+|+|||++..+ ..||+|+||..|+||
T Consensus 154 lSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iV 233 (316)
T COG0444 154 LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIV 233 (316)
T ss_pred cCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEE
Confidence 999999999999999999999999999999999999999999998874 88999999999987 569999999999999
Q ss_pred EecChhHHhcCCCcHHHHHH
Q psy5743 619 EIGSYAHLIKNPNSMFNKLM 638 (644)
Q Consensus 619 e~Gt~~eLl~~~~~~y~~l~ 638 (644)
|.|+.+++.+++.-.|.+..
T Consensus 234 E~g~~~~i~~~P~HPYT~~L 253 (316)
T COG0444 234 EEGPVEEIFKNPKHPYTRGL 253 (316)
T ss_pred EeCCHHHHhcCCCChHHHHH
Confidence 99999999998777776644
No 276
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-41 Score=378.54 Aligned_cols=215 Identities=26% Similarity=0.397 Sum_probs=180.3
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHH-hcc
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYL-RSQ 477 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~l-r~~ 477 (644)
-|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.... ++.
T Consensus 5 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 81 (510)
T PRK09700 5 YISMAGIGKSFGP---VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLG 81 (510)
T ss_pred eEEEeeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCC
Confidence 3899999999963 469999999999999999999999999999999999999999999999999988876554 467
Q ss_pred eEEEecCCCCCcc-cHHHHHhcCCCCC---CC---CC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhH
Q psy5743 478 IGSVSQEPTLFSG-TIYENILYGVNDS---SS---VT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQ 546 (644)
Q Consensus 478 i~~V~Q~~~Lf~g-TIreNI~~g~~~~---~~---~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQ 546 (644)
++||+|++.+|.. |++||+.++.... .. .+ ++++.++++..++.+. .+ ....+|||||
T Consensus 82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-------~~----~~~~~LSgG~ 150 (510)
T PRK09700 82 IGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVD-------LD----EKVANLSISH 150 (510)
T ss_pred eEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCC-------cc----cchhhCCHHH
Confidence 9999999998875 9999998763210 00 11 1234444444444221 23 3345799999
Q ss_pred HHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHh-hcCEEEEEeCCeEEEecChh
Q psy5743 547 KQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYA 624 (644)
Q Consensus 547 kQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~ 624 (644)
|||++|||||+.+|++||||||||+||+.+...+.+.|.++. +++|+|+|||+++.+. .||+|++|++|++++.|+++
T Consensus 151 ~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~ 230 (510)
T PRK09700 151 KQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVS 230 (510)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchh
Confidence 999999999999999999999999999999999999998874 3789999999999985 59999999999999999988
Q ss_pred HHh
Q psy5743 625 HLI 627 (644)
Q Consensus 625 eLl 627 (644)
++.
T Consensus 231 ~~~ 233 (510)
T PRK09700 231 DVS 233 (510)
T ss_pred hCC
Confidence 865
No 277
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.1e-41 Score=375.25 Aligned_cols=215 Identities=26% Similarity=0.406 Sum_probs=180.4
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCC--CCcEEEECCccCCCCChHH-Hh
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDP--QNGKILIDGVDIKELDPMY-LR 475 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p--~~G~I~idg~~i~~~~~~~-lr 475 (644)
-|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+... +|
T Consensus 5 ~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (506)
T PRK13549 5 LLEMKNITKTFGG---VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTER 81 (506)
T ss_pred eEEEeeeEEEeCC---eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHH
Confidence 3899999999963 4699999999999999999999999999999999999996 8999999999998777654 46
Q ss_pred cceEEEecCCCCCcc-cHHHHHhcCCCCC--CCCCH----HHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHH
Q psy5743 476 SQIGSVSQEPTLFSG-TIYENILYGVNDS--SSVTK----SDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQ 548 (644)
Q Consensus 476 ~~i~~V~Q~~~Lf~g-TIreNI~~g~~~~--~~~~~----~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQ 548 (644)
+.++||+|++.+|.. |++||+.++.... ...+. +++.++++..++. .........|||||||
T Consensus 82 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgGqkq 150 (506)
T PRK13549 82 AGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLD-----------INPATPVGNLGLGQQQ 150 (506)
T ss_pred CCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCC-----------CCcccchhhCCHHHHH
Confidence 789999999998874 9999999874210 00122 2344444444432 2223344679999999
Q ss_pred HHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHH
Q psy5743 549 RIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHL 626 (644)
Q Consensus 549 RiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eL 626 (644)
|++|||||+.+|++||||||||+||+.+...+.+.|.++. +++|+|+|||+++.+. .||+|++|++|++++.|+.+++
T Consensus 151 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 230 (506)
T PRK13549 151 LVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGM 230 (506)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccC
Confidence 9999999999999999999999999999999999998864 4789999999999885 5999999999999999998876
Q ss_pred h
Q psy5743 627 I 627 (644)
Q Consensus 627 l 627 (644)
.
T Consensus 231 ~ 231 (506)
T PRK13549 231 T 231 (506)
T ss_pred C
Confidence 4
No 278
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=2.6e-41 Score=339.74 Aligned_cols=194 Identities=26% Similarity=0.384 Sum_probs=159.5
Q ss_pred CccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEe-cCCCCC-cccH
Q psy5743 415 AVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVS-QEPTLF-SGTI 492 (644)
Q Consensus 415 ~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~-Q~~~Lf-~gTI 492 (644)
+++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++... ...++++++|++ |++.+| ..|+
T Consensus 34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~~~~~~~~~~~~~tv 112 (236)
T cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKR-RKKFLRRIGVVFGQKTQLWWDLPV 112 (236)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccc-chhhcccEEEEcCCccccCCCCcH
Confidence 4699999999999999999999999999999999999999999999999987653 356788999997 667776 5799
Q ss_pred HHHHhcCCCCCCCCCHHHHH----HHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecc
Q psy5743 493 YENILYGVNDSSSVTKSDII----HAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEA 568 (644)
Q Consensus 493 reNI~~g~~~~~~~~~~~i~----~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEa 568 (644)
+||+.+.... ...+.++.. ++++..++ ++..++.+ ..||||||||++||||++.+|+++|||||
T Consensus 113 ~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~gl-------~~~~~~~~----~~LS~G~~qrl~la~al~~~p~llllDEP 180 (236)
T cd03267 113 IDSFYLLAAI-YDLPPARFKKRLDELSELLDL-------EELLDTPV----RQLSLGQRMRAEIAAALLHEPEILFLDEP 180 (236)
T ss_pred HHHHHHHHHH-cCCCHHHHHHHHHHHHHHcCC-------hhHhcCCh----hhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 9999765321 112333332 23333332 22334443 56999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEEEeCCeEEEec
Q psy5743 569 TSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIG 621 (644)
Q Consensus 569 TSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~G 621 (644)
|++||+++.+.+.+.|.++.+ ++|+|+|||+++.+. .||+|++|++|++++.|
T Consensus 181 t~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 181 TIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 999999999999999998753 689999999999875 59999999999998765
No 279
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-41 Score=315.29 Aligned_cols=218 Identities=32% Similarity=0.492 Sum_probs=182.3
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
+++.+++-+|++ ...+++||||+++.||.++|.||+|+||||+++.|.+++.|++|.|.+||.|... ++...|++||
T Consensus 2 l~v~~l~K~y~~--~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~-~p~~vrr~IG 78 (245)
T COG4555 2 LEVTDLTKSYGS--KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVR-DPSFVRRKIG 78 (245)
T ss_pred eeeeehhhhccC--HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeeccccc-ChHHHhhhcc
Confidence 678999999974 3458999999999999999999999999999999999999999999999999887 4678899999
Q ss_pred EEecCCCCCc-ccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHcc
Q psy5743 480 SVSQEPTLFS-GTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIK 558 (644)
Q Consensus 480 ~V~Q~~~Lf~-gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~ 558 (644)
+++-+.-|+. -|.||||.|+..- ...++.++ .++.+.+. ..| |++.....+-.++|-|+|||++|||||.+
T Consensus 79 Vl~~e~glY~RlT~rEnl~~Fa~L-~~l~~~~~--kari~~l~---k~l--~l~~~~~rRv~~~S~G~kqkV~iARAlvh 150 (245)
T COG4555 79 VLFGERGLYARLTARENLKYFARL-NGLSRKEI--KARIAELS---KRL--QLLEYLDRRVGEFSTGMKQKVAIARALVH 150 (245)
T ss_pred eecCCcChhhhhhHHHHHHHHHHH-hhhhhhHH--HHHHHHHH---HHh--ChHHHHHHHHhhhchhhHHHHHHHHHHhc
Confidence 9997777775 6999999987431 01233332 22222222 222 23333333444699999999999999999
Q ss_pred CCCEEEeecccCCCCHHHHHHHHHHHHHHcC-CceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHHhc
Q psy5743 559 KSKILLLDEATSALDAENEYLVQSAIEKLIE-GKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHLIK 628 (644)
Q Consensus 559 ~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~-~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eLl~ 628 (644)
||++++||||||+||..+.+.+.+-|.++.. ++++|+-||-++.++ -||+|+++.+|+++..|+.+++.+
T Consensus 151 ~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~ 222 (245)
T COG4555 151 DPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDA 222 (245)
T ss_pred CCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHH
Confidence 9999999999999999999999999998875 899999999999997 799999999999999999999875
No 280
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=6.5e-41 Score=373.22 Aligned_cols=214 Identities=26% Similarity=0.375 Sum_probs=178.4
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHH-hcce
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYL-RSQI 478 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~l-r~~i 478 (644)
|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+.... |+.+
T Consensus 5 i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 81 (501)
T PRK10762 5 LQLKGIDKAFPG---VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGI 81 (501)
T ss_pred EEEeeeEEEeCC---eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence 899999999963 469999999999999999999999999999999999999999999999999977665443 5679
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCCCC---CCCCH----HHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHH
Q psy5743 479 GSVSQEPTLFSG-TIYENILYGVNDS---SSVTK----SDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRI 550 (644)
Q Consensus 479 ~~V~Q~~~Lf~g-TIreNI~~g~~~~---~~~~~----~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRi 550 (644)
+||+|++.+|.. |++||+.++.... ...+. +++.++++..++.+ ........||||||||+
T Consensus 82 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgG~~qrv 150 (501)
T PRK10762 82 GIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRF-----------SSDKLVGELSIGEQQMV 150 (501)
T ss_pred EEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCC-----------CccCchhhCCHHHHHHH
Confidence 999999988864 9999999864210 00122 23344444444322 22233457999999999
Q ss_pred HHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHHh
Q psy5743 551 AIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHLI 627 (644)
Q Consensus 551 aLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eLl 627 (644)
+|||||+.+|++|||||||++||+.+...+.+.|.++. .++|+|+|||+++.+. .||+|++|++|++++.|+.+++.
T Consensus 151 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (501)
T PRK10762 151 EIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLT 229 (501)
T ss_pred HHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCC
Confidence 99999999999999999999999999999999998864 3689999999999885 59999999999999999988764
No 281
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=3.5e-41 Score=377.87 Aligned_cols=221 Identities=31% Similarity=0.504 Sum_probs=180.7
Q ss_pred cEEEEEEEEEcCCC--------CCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCC
Q psy5743 399 EIDFNNIRFSYPSR--------PDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELD 470 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~--------~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~ 470 (644)
-|+++|++++|+.. .+.++|+|+||+|++||++||+||||||||||+++|+|++ |++|+|.++|.++..++
T Consensus 275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~-~~~G~i~~~g~~i~~~~ 353 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLHNLN 353 (529)
T ss_pred cccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC-CCCcEEEECCEEccccc
Confidence 48999999999621 1357999999999999999999999999999999999999 58999999999998776
Q ss_pred hHH---HhcceEEEecCC--CCCc-ccHHHHHhcCCCCCC-CCC----HHHHHHHHHHHhhccchhhhhcCccccccCCC
Q psy5743 471 PMY---LRSQIGSVSQEP--TLFS-GTIYENILYGVNDSS-SVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERG 539 (644)
Q Consensus 471 ~~~---lr~~i~~V~Q~~--~Lf~-gTIreNI~~g~~~~~-~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G 539 (644)
... +|+.++||+|++ .+|. .|++||+.++..... ..+ ++++.++++..++.+ .......
T Consensus 354 ~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~ 423 (529)
T PRK15134 354 RRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDP----------ETRHRYP 423 (529)
T ss_pred hhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCH----------HHHhcCC
Confidence 543 477899999998 3665 599999987521000 011 233444444444321 1223445
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEEEeCCe
Q psy5743 540 IMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIR-KSNQICVLDKGK 616 (644)
Q Consensus 540 ~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~-~aD~Iivl~~G~ 616 (644)
..||||||||++||||++.+|++||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|+
T Consensus 424 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~ 503 (529)
T PRK15134 424 AEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGE 503 (529)
T ss_pred ccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCE
Confidence 67999999999999999999999999999999999999999999998753 789999999999885 599999999999
Q ss_pred EEEecChhHHhcCC
Q psy5743 617 IVEIGSYAHLIKNP 630 (644)
Q Consensus 617 ive~Gt~~eLl~~~ 630 (644)
+++.|+.+++++.+
T Consensus 504 i~~~~~~~~~~~~~ 517 (529)
T PRK15134 504 VVEQGDCERVFAAP 517 (529)
T ss_pred EEEEcCHHHHhcCC
Confidence 99999999998643
No 282
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=6e-41 Score=359.35 Aligned_cols=231 Identities=28% Similarity=0.449 Sum_probs=191.3
Q ss_pred cEEEEEEEEEcCCCCCC-ccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCC----CcEEEECCccCCCCChHH
Q psy5743 399 EIDFNNIRFSYPSRPDA-VILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQ----NGKILIDGVDIKELDPMY 473 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~-~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~----~G~I~idg~~i~~~~~~~ 473 (644)
-++++|++..|...... .+++||||+|.+||.+||||+|||||||+++.|+|+.++. +|+|.++|.|+..++.+.
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 48999999999754222 5899999999999999999999999999999999999988 899999999999999877
Q ss_pred Hh----cceEEEecCCC-CCcc--cHHHHHh----cCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCC
Q psy5743 474 LR----SQIGSVSQEPT-LFSG--TIYENIL----YGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIML 542 (644)
Q Consensus 474 lr----~~i~~V~Q~~~-Lf~g--TIreNI~----~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~L 542 (644)
+| +.|++|+|+|+ .+|- ||-+-|+ ...+.......++..+.++.+++.+-... ..-...|
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~---------~~yPheL 155 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERR---------DRYPHQL 155 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhh---------ccCCccc
Confidence 64 46999999987 6664 4544443 33211011234556666777776553332 2345789
Q ss_pred ChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc--CCceEEEEccCchHH-hhcCEEEEEeCCeEEE
Q psy5743 543 SGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI--EGKTVLTIAHRLSTI-RKSNQICVLDKGKIVE 619 (644)
Q Consensus 543 SGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~--~~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive 619 (644)
|||||||+.||+||..+|++||+||||.+||+.+++.|++.|+++. .+.++|+|||++..+ ..||+|+||++|+++|
T Consensus 156 SGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE 235 (539)
T COG1123 156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVE 235 (539)
T ss_pred CchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999876 588999999999998 5599999999999999
Q ss_pred ecChhHHhcCCCcHHHHHH
Q psy5743 620 IGSYAHLIKNPNSMFNKLM 638 (644)
Q Consensus 620 ~Gt~~eLl~~~~~~y~~l~ 638 (644)
.|+.+++++++.-.|.+-.
T Consensus 236 ~G~~~~i~~~p~hpYT~~L 254 (539)
T COG1123 236 TGPTEEILSNPQHPYTRGL 254 (539)
T ss_pred ecCHHHHHhccCCcccHHH
Confidence 9999999988766776543
No 283
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=5.1e-41 Score=328.78 Aligned_cols=194 Identities=25% Similarity=0.339 Sum_probs=164.0
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+ ..+++.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 76 (198)
T TIGR01189 1 LAARNLACSRGE---RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR-DEPHRNIL 76 (198)
T ss_pred CEEEEEEEEECC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch-HHhhhheE
Confidence 578999999963 46999999999999999999999999999999999999999999999999998765 45778999
Q ss_pred EEecCCCCCc-ccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHcc
Q psy5743 480 SVSQEPTLFS-GTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIK 558 (644)
Q Consensus 480 ~V~Q~~~Lf~-gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~ 558 (644)
|++|++.+|. .|++||+.++.+.. ...++++.++++..++.++. ++ ....||||||||++||||+++
T Consensus 77 ~~~q~~~~~~~~tv~~~l~~~~~~~-~~~~~~~~~~l~~~~l~~~~-------~~----~~~~LS~G~~qrv~la~al~~ 144 (198)
T TIGR01189 77 YLGHLPGLKPELSALENLHFWAAIH-GGAQRTIEDALAAVGLTGFE-------DL----PAAQLSAGQQRRLALARLWLS 144 (198)
T ss_pred EeccCcccccCCcHHHHHHHHHHHc-CCcHHHHHHHHHHcCCHHHh-------cC----ChhhcCHHHHHHHHHHHHHhc
Confidence 9999999886 79999998764321 11234577777777776543 22 235799999999999999999
Q ss_pred CCCEEEeecccCCCCHHHHHHHHHHHHHH-cCCceEEEEccCchHHhhcCEEE
Q psy5743 559 KSKILLLDEATSALDAENEYLVQSAIEKL-IEGKTVLTIAHRLSTIRKSNQIC 610 (644)
Q Consensus 559 ~p~IliLDEaTSaLD~~~e~~i~~~l~~~-~~~~TvI~IaHrl~~i~~aD~Ii 610 (644)
+|++++|||||++||..+.+.+.+.|.++ .+++|+|+|||+...+.. |+.+
T Consensus 145 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~-~~~~ 196 (198)
T TIGR01189 145 RAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGLVE-AREL 196 (198)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccccccc-eEEe
Confidence 99999999999999999999999999886 357899999999865543 5544
No 284
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=8.5e-41 Score=379.50 Aligned_cols=203 Identities=29% Similarity=0.426 Sum_probs=172.5
Q ss_pred CCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCC--CcEEEECCccCCCCChHHHhcceEEEecCCCCCc-c
Q psy5743 414 DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQ--NGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFS-G 490 (644)
Q Consensus 414 ~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~--~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~-g 490 (644)
++.+|+|+|+++++||++||+||||||||||+++|+|+++|+ +|+|.+||+++. ...+++++||+|++.+|. .
T Consensus 80 ~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~----~~~~~~i~yv~Q~~~l~~~l 155 (659)
T PLN03211 80 ERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPT----KQILKRTGFVTQDDILYPHL 155 (659)
T ss_pred CCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECc----hhhccceEEECcccccCCcC
Confidence 356999999999999999999999999999999999999985 999999999874 245678999999999996 5
Q ss_pred cHHHHHhcCCCCC--CCCCHHHHH----HHHHHHhhccchhhhhcCccccccCC-CCCCChhHHHHHHHHHHHccCCCEE
Q psy5743 491 TIYENILYGVNDS--SSVTKSDII----HAAKEANAYGFVIDFKNGFDTIVGER-GIMLSGGQKQRIAIARALIKKSKIL 563 (644)
Q Consensus 491 TIreNI~~g~~~~--~~~~~~~i~----~a~~~a~l~~~i~~lp~Gl~T~ige~-G~~LSGGQkQRiaLARAll~~p~Il 563 (644)
|++||+.++.... ...++++.. +.++..+ |++..||.||+. ...||||||||++|||||+++|+||
T Consensus 156 TV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iL 228 (659)
T PLN03211 156 TVRETLVFCSLLRLPKSLTKQEKILVAESVISELG-------LTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 228 (659)
T ss_pred CHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcC-------ChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEE
Confidence 9999999863110 113444332 2333332 445679999864 7789999999999999999999999
Q ss_pred EeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchH--HhhcCEEEEEeCCeEEEecChhHHh
Q psy5743 564 LLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLST--IRKSNQICVLDKGKIVEIGSYAHLI 627 (644)
Q Consensus 564 iLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~--i~~aD~Iivl~~G~ive~Gt~~eLl 627 (644)
+||||||+||+.++..+.+.|+++. +++|+|+++|+++. .+.+|+|++|++|++++.|+++++.
T Consensus 229 lLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~ 295 (659)
T PLN03211 229 ILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAM 295 (659)
T ss_pred EEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHH
Confidence 9999999999999999999999875 58999999999984 5779999999999999999999986
No 285
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=1.5e-41 Score=385.70 Aligned_cols=220 Identities=25% Similarity=0.381 Sum_probs=182.8
Q ss_pred cEEEEEEEEEcCCC------CCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCC---CcEEEECCccCCCC
Q psy5743 399 EIDFNNIRFSYPSR------PDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQ---NGKILIDGVDIKEL 469 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~------~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~---~G~I~idg~~i~~~ 469 (644)
++++.++. +++.. .++++|+|+|++++|||.+||+||||||||||+++|+|..+|. +|+|.+||.++.
T Consensus 17 ~~~~~~~~-~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~-- 93 (617)
T TIGR00955 17 DGSWKQLV-SRLRGCFCRERPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPID-- 93 (617)
T ss_pred cchhhhhh-hhcccccccccCccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC--
Confidence 46666666 55322 2567999999999999999999999999999999999999885 899999999875
Q ss_pred ChHHHhcceEEEecCCCCCc-ccHHHHHhcCCCCCC--CCCHHHHHHHHHHHhhccchhh--hhcCccccccCC--CCCC
Q psy5743 470 DPMYLRSQIGSVSQEPTLFS-GTIYENILYGVNDSS--SVTKSDIIHAAKEANAYGFVID--FKNGFDTIVGER--GIML 542 (644)
Q Consensus 470 ~~~~lr~~i~~V~Q~~~Lf~-gTIreNI~~g~~~~~--~~~~~~i~~a~~~a~l~~~i~~--lp~Gl~T~ige~--G~~L 542 (644)
...+|+.++||+|++++|. .||+|||.|+..... ..+.++.. ..+++.++. +++..||.||+. +.+|
T Consensus 94 -~~~~~~~i~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~-----~~v~~~l~~lgL~~~~~t~vg~~~~~~~L 167 (617)
T TIGR00955 94 -AKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKR-----ERVDEVLQALGLRKCANTRIGVPGRVKGL 167 (617)
T ss_pred -HHHHhhhceeeccccccCccCcHHHHHHHHHhcCCCCCCCHHHHH-----HHHHHHHHHcCchhcCcCccCCCCCCCCc
Confidence 4678899999999999995 599999998743211 12333221 112222332 456789999985 4899
Q ss_pred ChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC-CceEEEEccCch--HHhhcCEEEEEeCCeEEE
Q psy5743 543 SGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE-GKTVLTIAHRLS--TIRKSNQICVLDKGKIVE 619 (644)
Q Consensus 543 SGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~-~~TvI~IaHrl~--~i~~aD~Iivl~~G~ive 619 (644)
|||||||++|||||+.+|++++||||||+||+.+...+.+.|+++.+ ++|+|+++|+++ ..+.+|+|++|++|++++
T Consensus 168 SgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~ 247 (617)
T TIGR00955 168 SGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAY 247 (617)
T ss_pred CcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEE
Confidence 99999999999999999999999999999999999999999998754 799999999996 468999999999999999
Q ss_pred ecChhHHh
Q psy5743 620 IGSYAHLI 627 (644)
Q Consensus 620 ~Gt~~eLl 627 (644)
.|+++++.
T Consensus 248 ~G~~~~~~ 255 (617)
T TIGR00955 248 LGSPDQAV 255 (617)
T ss_pred ECCHHHHH
Confidence 99999885
No 286
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=9.2e-41 Score=330.84 Aligned_cols=199 Identities=25% Similarity=0.290 Sum_probs=165.9
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
-|+++|++++|++ +++++++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|+++... ..++.+
T Consensus 11 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~---~~~~~i 84 (214)
T PRK13543 11 LLAAHALAFSRNE---EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG---DRSRFM 84 (214)
T ss_pred eEEEeeEEEecCC---ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch---hhhhce
Confidence 4899999999963 4699999999999999999999999999999999999999999999999988753 345689
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHc
Q psy5743 479 GSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALI 557 (644)
Q Consensus 479 ~~V~Q~~~Lf~g-TIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll 557 (644)
+|++|++.+|.+ |++||+.++.+......++.+.++++..++. ..+++. ...||||||||++||||++
T Consensus 85 ~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~----~~~LS~G~~qrv~laral~ 153 (214)
T PRK13543 85 AYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLA-------GYEDTL----VRQLSAGQKKRLALARLWL 153 (214)
T ss_pred EEeecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCCh-------hhccCC----hhhCCHHHHHHHHHHHHHh
Confidence 999999999986 9999998753210111233444455555432 223333 4679999999999999999
Q ss_pred cCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHH-hhcCEEEEEeC
Q psy5743 558 KKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTI-RKSNQICVLDK 614 (644)
Q Consensus 558 ~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i-~~aD~Iivl~~ 614 (644)
++|++++|||||++||.++.+.+.+.|++.. +++|+|++||+++.+ ..||+|++++.
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 154 SPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 9999999999999999999999999998754 468999999999988 56899999874
No 287
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=8e-41 Score=371.88 Aligned_cols=210 Identities=21% Similarity=0.251 Sum_probs=181.7
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 4 l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~ 80 (490)
T PRK10938 4 LQISQGTFRLSD---TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVS 80 (490)
T ss_pred EEEEeEEEEcCC---eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhc
Confidence 889999999964 35999999999999999999999999999999999999999999999999888777777888899
Q ss_pred EEecCCCC---------CcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHH
Q psy5743 480 SVSQEPTL---------FSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRI 550 (644)
Q Consensus 480 ~V~Q~~~L---------f~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRi 550 (644)
|++|++.+ +.-|++||+.++. ..++++.++++..++.+. .......||||||||+
T Consensus 81 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrv 144 (490)
T PRK10938 81 DEWQRNNTDMLSPGEDDTGRTTAEIIQDEV-----KDPARCEQLAQQFGITAL-----------LDRRFKYLSTGETRKT 144 (490)
T ss_pred eeccCcchhhcccchhhccccHHHhcccch-----hHHHHHHHHHHHcCCHhh-----------hhCCcccCCHHHHHHH
Confidence 99998753 2468999987642 234566667766665432 2334467999999999
Q ss_pred HHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC-CceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHHhc
Q psy5743 551 AIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE-GKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHLIK 628 (644)
Q Consensus 551 aLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~-~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eLl~ 628 (644)
+|||||+.+|++||||||||+||+++.+.+.+.|.++.+ ++|+|+|||+++.+. .||+|++|++|++++.|+.+++..
T Consensus 145 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 224 (490)
T PRK10938 145 LLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQ 224 (490)
T ss_pred HHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999999999988743 689999999999885 589999999999999999998865
No 288
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=9e-41 Score=329.18 Aligned_cols=196 Identities=27% Similarity=0.344 Sum_probs=167.6
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
|+++|++++|++ ..+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. .. +|++++
T Consensus 3 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~--~~-~~~~~~ 76 (207)
T PRK13539 3 LEGEDLACVRGG---RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD--PD-VAEACH 76 (207)
T ss_pred EEEEeEEEEECC---eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc--hh-hHhhcE
Confidence 789999999963 468999999999999999999999999999999999999999999999998753 22 788999
Q ss_pred EEecCCCCC-cccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHcc
Q psy5743 480 SVSQEPTLF-SGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIK 558 (644)
Q Consensus 480 ~V~Q~~~Lf-~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~ 558 (644)
|++|++.++ +.|++||+.+.... ...+++++.++++..++.++. +.| ...||||||||++||||+++
T Consensus 77 ~~~~~~~~~~~~tv~~~l~~~~~~-~~~~~~~~~~~l~~~~l~~~~-~~~----------~~~LS~G~~qrl~la~al~~ 144 (207)
T PRK13539 77 YLGHRNAMKPALTVAENLEFWAAF-LGGEELDIAAALEAVGLAPLA-HLP----------FGYLSAGQKRRVALARLLVS 144 (207)
T ss_pred EecCCCcCCCCCcHHHHHHHHHHh-cCCcHHHHHHHHHHcCCHHHH-cCC----------hhhcCHHHHHHHHHHHHHhc
Confidence 999888765 68999999875321 113456677888888875432 222 24799999999999999999
Q ss_pred CCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhhcCEEEEEeC
Q psy5743 559 KSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIRKSNQICVLDK 614 (644)
Q Consensus 559 ~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~~aD~Iivl~~ 614 (644)
+|+++||||||++||..+.+.+.+.|.+.. +++|+|++||+++.+.. |+++.++.
T Consensus 145 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~-~~~~~~~~ 200 (207)
T PRK13539 145 NRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG-ARELDLGP 200 (207)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc-CcEEeecC
Confidence 999999999999999999999999998753 57899999999999998 99988854
No 289
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.8e-41 Score=372.34 Aligned_cols=216 Identities=27% Similarity=0.412 Sum_probs=176.4
Q ss_pred EEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCCh-HHHhcceEE
Q psy5743 402 FNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDP-MYLRSQIGS 480 (644)
Q Consensus 402 ~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~-~~lr~~i~~ 480 (644)
++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. +.+|+.++|
T Consensus 1 ~~nl~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 77 (491)
T PRK10982 1 MSNISKSFPG---VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISM 77 (491)
T ss_pred CCceEEEeCC---EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEE
Confidence 4689999963 469999999999999999999999999999999999999999999999999977654 445778999
Q ss_pred EecCCCCCc-ccHHHHHhcCCCCCCC--CCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHc
Q psy5743 481 VSQEPTLFS-GTIYENILYGVNDSSS--VTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALI 557 (644)
Q Consensus 481 V~Q~~~Lf~-gTIreNI~~g~~~~~~--~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll 557 (644)
|+|++.+|. .|++||+.++...... .+.++..+.+ .+.++.+ |++........+||||||||++|||||+
T Consensus 78 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lA~al~ 150 (491)
T PRK10982 78 VHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDT-----KAIFDEL--DIDIDPRAKVATLSVSQMQMIEIAKAFS 150 (491)
T ss_pred EecccccccCCCHHHHhhcccccccccccCHHHHHHHH-----HHHHHHc--CCCCCccCchhhCCHHHHHHHHHHHHHH
Confidence 999998775 5999999986421000 1222222111 1122222 3333344556789999999999999999
Q ss_pred cCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHHh
Q psy5743 558 KKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHLI 627 (644)
Q Consensus 558 ~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eLl 627 (644)
++|++|||||||++||+.+.+.+.+.|.++. +++|+|+|||+++.+. .||+|++|++|++++.|+.+++.
T Consensus 151 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 222 (491)
T PRK10982 151 YNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLT 222 (491)
T ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCC
Confidence 9999999999999999999999999998864 4789999999999875 59999999999999999988763
No 290
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.3e-41 Score=371.97 Aligned_cols=211 Identities=28% Similarity=0.420 Sum_probs=176.0
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCCh-HHHhcc
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDP-MYLRSQ 477 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~-~~lr~~ 477 (644)
-|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. +.+|++
T Consensus 4 ~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 80 (501)
T PRK11288 4 YLSFDGIGKTFPG---VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAG 80 (501)
T ss_pred eEEEeeeEEEECC---EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCC
Confidence 4899999999963 469999999999999999999999999999999999999999999999999976554 456788
Q ss_pred eEEEecCCCCCcc-cHHHHHhcCCCCC--CCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHH
Q psy5743 478 IGSVSQEPTLFSG-TIYENILYGVNDS--SSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRI 550 (644)
Q Consensus 478 i~~V~Q~~~Lf~g-TIreNI~~g~~~~--~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRi 550 (644)
++||+|++.+|.+ |++||+.++.... ...+ ++++.++++..++. .........||||||||+
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgGq~qrv 149 (501)
T PRK11288 81 VAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVD-----------IDPDTPLKYLSIGQRQMV 149 (501)
T ss_pred EEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCC-----------CCcCCchhhCCHHHHHHH
Confidence 9999999998875 9999999864210 0012 22344445544432 222334567999999999
Q ss_pred HHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHh-hcCEEEEEeCCeEEEecCh
Q psy5743 551 AIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSY 623 (644)
Q Consensus 551 aLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~ 623 (644)
+|||||+.+|++||||||||+||+.+.+.+.+.|.++. +++|+|+|||+++.+. .||+|++|++|++++.++.
T Consensus 150 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 150 EIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred HHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCc
Confidence 99999999999999999999999999999999998864 4789999999999885 5999999999999977653
No 291
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=2.1e-40 Score=371.53 Aligned_cols=223 Identities=26% Similarity=0.427 Sum_probs=181.8
Q ss_pred cEEEEEEEEEcCCC-CCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCC-----CCcEEEECCccCCCCChH
Q psy5743 399 EIDFNNIRFSYPSR-PDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDP-----QNGKILIDGVDIKELDPM 472 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~-~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p-----~~G~I~idg~~i~~~~~~ 472 (644)
-|+++|++++|++. .+.++|+|+||++++||++||+||||||||||+++|+|+++| ++|+|.++|.++..++..
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 38999999999631 135799999999999999999999999999999999999987 799999999999887754
Q ss_pred H---Hh-cceEEEecCCC--CCc-ccHHHHHhcCCC---CC-CCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCC
Q psy5743 473 Y---LR-SQIGSVSQEPT--LFS-GTIYENILYGVN---DS-SSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIM 541 (644)
Q Consensus 473 ~---lr-~~i~~V~Q~~~--Lf~-gTIreNI~~g~~---~~-~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~ 541 (644)
. +| +.++||+|++. ++. -|+++|+.++.. .. ....++++.++++..++.+... .......+
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~--------~~~~~~~~ 156 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAK--------RLTDYPHQ 156 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHH--------HHhhCCcc
Confidence 3 34 57999999985 443 589999874210 00 0012345566666666543110 12334567
Q ss_pred CChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc--CCceEEEEccCchHHh-hcCEEEEEeCCeEE
Q psy5743 542 LSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI--EGKTVLTIAHRLSTIR-KSNQICVLDKGKIV 618 (644)
Q Consensus 542 LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~--~~~TvI~IaHrl~~i~-~aD~Iivl~~G~iv 618 (644)
||||||||++|||||+.+|++||||||||+||+++.+.+.+.|+++. .++|+|+|||+++.+. .||+|++|++|+++
T Consensus 157 LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~ 236 (529)
T PRK15134 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCV 236 (529)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999998874 3789999999999875 59999999999999
Q ss_pred EecChhHHhcC
Q psy5743 619 EIGSYAHLIKN 629 (644)
Q Consensus 619 e~Gt~~eLl~~ 629 (644)
+.|+.++++..
T Consensus 237 ~~g~~~~~~~~ 247 (529)
T PRK15134 237 EQNRAATLFSA 247 (529)
T ss_pred EeCCHHHHhhC
Confidence 99999998754
No 292
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-40 Score=378.49 Aligned_cols=228 Identities=25% Similarity=0.402 Sum_probs=181.9
Q ss_pred cEEEEEEEEEcCCCC-CCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCC----------
Q psy5743 399 EIDFNNIRFSYPSRP-DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIK---------- 467 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~-~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~---------- 467 (644)
-|+++|++++|+... +.++|+||||++++||++||||+||||||||+++|+|+++|++|+|.++|+++.
T Consensus 12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~ 91 (623)
T PRK10261 12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELS 91 (623)
T ss_pred eEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccc
Confidence 489999999996321 347999999999999999999999999999999999999999999999997552
Q ss_pred CCChH---HHh-cceEEEecCC--CCCc-ccHHHHHhcCCCCCCCCCH----HHHHHHHHHHhhccchhhhhcCcccccc
Q psy5743 468 ELDPM---YLR-SQIGSVSQEP--TLFS-GTIYENILYGVNDSSSVTK----SDIIHAAKEANAYGFVIDFKNGFDTIVG 536 (644)
Q Consensus 468 ~~~~~---~lr-~~i~~V~Q~~--~Lf~-gTIreNI~~g~~~~~~~~~----~~i~~a~~~a~l~~~i~~lp~Gl~T~ig 536 (644)
..+.. .+| +.||||+|+| .++. -|++|||.++.......+. +++.++++..++.+. +....
T Consensus 92 ~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~--------~~~~~ 163 (623)
T PRK10261 92 EQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEA--------QTILS 163 (623)
T ss_pred cCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh--------hhHHh
Confidence 22322 334 4799999998 5765 5999999875210000222 344555555554210 12234
Q ss_pred CCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHH-hhcCEEEEEe
Q psy5743 537 ERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTI-RKSNQICVLD 613 (644)
Q Consensus 537 e~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i-~~aD~Iivl~ 613 (644)
....+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+ ..||+|++|+
T Consensus 164 ~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~ 243 (623)
T PRK10261 164 RYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMY 243 (623)
T ss_pred CCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEee
Confidence 45568999999999999999999999999999999999999999999998753 78999999999987 5599999999
Q ss_pred CCeEEEecChhHHhcCCCcHH
Q psy5743 614 KGKIVEIGSYAHLIKNPNSMF 634 (644)
Q Consensus 614 ~G~ive~Gt~~eLl~~~~~~y 634 (644)
+|+|++.|++++++..+...|
T Consensus 244 ~G~i~~~g~~~~~~~~~~~~~ 264 (623)
T PRK10261 244 QGEAVETGSVEQIFHAPQHPY 264 (623)
T ss_pred CCeecccCCHHHhhcCCCChh
Confidence 999999999999876433333
No 293
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=8.7e-41 Score=327.91 Aligned_cols=195 Identities=35% Similarity=0.561 Sum_probs=171.6
Q ss_pred EEEEEEEEEcCCCC------CCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHH
Q psy5743 400 IDFNNIRFSYPSRP------DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMY 473 (644)
Q Consensus 400 I~~~~vsf~Y~~~~------~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~ 473 (644)
++++|++..|+... ...+++||||+|++||+++|||+|||||||+.++++|+++|++|+|+++|+|+..++
T Consensus 5 l~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~--- 81 (268)
T COG4608 5 LEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS--- 81 (268)
T ss_pred EEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc---
Confidence 78999999997532 136899999999999999999999999999999999999999999999999988876
Q ss_pred HhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhcc-chhhhhcCccccccCCCCCCChhHHHHHHH
Q psy5743 474 LRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYG-FVIDFKNGFDTIVGERGIMLSGGQKQRIAI 552 (644)
Q Consensus 474 lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~-~i~~lp~Gl~T~ige~G~~LSGGQkQRiaL 552 (644)
.. .-++++.+.++.+|+.+ +..+.| ..|||||+|||+|
T Consensus 82 --------------------------~~----~~~~~v~elL~~Vgl~~~~~~ryP-----------helSGGQrQRi~I 120 (268)
T COG4608 82 --------------------------KE----ERRERVLELLEKVGLPEEFLYRYP-----------HELSGGQRQRIGI 120 (268)
T ss_pred --------------------------hh----HHHHHHHHHHHHhCCCHHHhhcCC-----------cccCchhhhhHHH
Confidence 11 24677999999999876 333444 5799999999999
Q ss_pred HHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHhh-cCEEEEEeCCeEEEecChhHHhcC
Q psy5743 553 ARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLIKN 629 (644)
Q Consensus 553 ARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~~-aD~Iivl~~G~ive~Gt~~eLl~~ 629 (644)
||||.-+|++++.|||||+||...+.+|.+.+.++.+ +-|.++|||+++.++. ||+|.||..|+|+|.|+-+++..+
T Consensus 121 ARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~~ 200 (268)
T COG4608 121 ARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSN 200 (268)
T ss_pred HHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhhC
Confidence 9999999999999999999999999999999977653 7899999999999965 899999999999999999999988
Q ss_pred CCcHHHHHH
Q psy5743 630 PNSMFNKLM 638 (644)
Q Consensus 630 ~~~~y~~l~ 638 (644)
+.-.|-+..
T Consensus 201 p~HpYTk~L 209 (268)
T COG4608 201 PLHPYTKAL 209 (268)
T ss_pred CCCHHHHHH
Confidence 777776553
No 294
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=1.4e-40 Score=332.10 Aligned_cols=202 Identities=27% Similarity=0.398 Sum_probs=163.0
Q ss_pred EEEEEEEEEcCCC---C-CCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEEC--Cc--cCCCCCh
Q psy5743 400 IDFNNIRFSYPSR---P-DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILID--GV--DIKELDP 471 (644)
Q Consensus 400 I~~~~vsf~Y~~~---~-~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~id--g~--~i~~~~~ 471 (644)
|+++|++++|++. . ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++ |. ++..++.
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~ 81 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence 6899999999631 1 2469999999999999999999999999999999999999999999998 43 6766665
Q ss_pred HH---H-hcceEEEecCCCCCcc-cHHHHHhcCCCCCCCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCC
Q psy5743 472 MY---L-RSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIML 542 (644)
Q Consensus 472 ~~---l-r~~i~~V~Q~~~Lf~g-TIreNI~~g~~~~~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~L 542 (644)
.. + ++.++||+|++.+|.. |++|||.+..... ..+ ++++.++++..++.+.. ....+..|
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~L 150 (224)
T TIGR02324 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER-GVPREAARARARELLARLNIPERL----------WHLPPATF 150 (224)
T ss_pred HHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHcCCchhh----------hhCCcccC
Confidence 54 3 4579999999998874 9999997632110 122 23444445554443221 12346689
Q ss_pred ChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHh-hcCEEEEE
Q psy5743 543 SGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIR-KSNQICVL 612 (644)
Q Consensus 543 SGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~-~aD~Iivl 612 (644)
|||||||++||||++++|+++||||||++||+++.+.+.+.|+++. +++|+|+|||+++.+. .||+|+.+
T Consensus 151 S~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 151 SGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence 9999999999999999999999999999999999999999998875 3789999999999885 69999876
No 295
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=2e-40 Score=378.31 Aligned_cols=217 Identities=31% Similarity=0.451 Sum_probs=185.7
Q ss_pred cEEEEEEEEEcCCCC-CCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHH---
Q psy5743 399 EIDFNNIRFSYPSRP-DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYL--- 474 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~-~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~l--- 474 (644)
-|+++|++++|++.. .+++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.+||+++...+.+++
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 83 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQL 83 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHH
Confidence 389999999997422 2579999999999999999999999999999999999999999999999999999987764
Q ss_pred -hcceEEEecCCCCCc-ccHHHHHhcCCCCCCCCCH----HHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHH
Q psy5743 475 -RSQIGSVSQEPTLFS-GTIYENILYGVNDSSSVTK----SDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQ 548 (644)
Q Consensus 475 -r~~i~~V~Q~~~Lf~-gTIreNI~~g~~~~~~~~~----~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQ 548 (644)
|+.++|++|++.+|+ .|+.||+.++.... ..+. ++..+.++.. |++..+......|||||+|
T Consensus 84 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~-~~~~~~~~~~~~~~l~~l-----------gl~~~~~~~~~~LS~Gq~q 151 (648)
T PRK10535 84 RREHFGFIFQRYHLLSHLTAAQNVEVPAVYA-GLERKQRLLRAQELLQRL-----------GLEDRVEYQPSQLSGGQQQ 151 (648)
T ss_pred HhccEEEEeCCcccCCCCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHC-----------CChhhhcCCcccCCHHHHH
Confidence 578999999999997 59999998753210 0111 1223333333 4445555556789999999
Q ss_pred HHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhhcCEEEEEeCCeEEEecChhHHh
Q psy5743 549 RIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLI 627 (644)
Q Consensus 549 RiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eLl 627 (644)
|++|||||+++|+++||||||++||.++.+.+.+.|+++. +++|+|+|||+++.+..||++++|++|++++.|+.+|..
T Consensus 152 rv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 152 RVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEEeecCccccc
Confidence 9999999999999999999999999999999999998875 479999999999999999999999999999999999876
No 296
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=2.1e-40 Score=369.44 Aligned_cols=214 Identities=25% Similarity=0.386 Sum_probs=176.3
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCC--CCcEEEECCccCCCCChHH-Hhc
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDP--QNGKILIDGVDIKELDPMY-LRS 476 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p--~~G~I~idg~~i~~~~~~~-lr~ 476 (644)
|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+... +|+
T Consensus 2 l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (500)
T TIGR02633 2 LEMKGIVKTFGG---VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERA 78 (500)
T ss_pred EEEEeEEEEeCC---eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 789999999963 4699999999999999999999999999999999999987 7999999999998877654 456
Q ss_pred ceEEEecCCCCCcc-cHHHHHhcCCCCCC---CCCH----HHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHH
Q psy5743 477 QIGSVSQEPTLFSG-TIYENILYGVNDSS---SVTK----SDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQ 548 (644)
Q Consensus 477 ~i~~V~Q~~~Lf~g-TIreNI~~g~~~~~---~~~~----~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQ 548 (644)
.++||+|++.+|.. |++||+.++..... ..+. +++.++++..++.+.. .+.+ ...|||||||
T Consensus 79 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~----~~~LSgG~~q 148 (500)
T TIGR02633 79 GIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADN------VTRP----VGDYGGGQQQ 148 (500)
T ss_pred CEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCc------ccCc----hhhCCHHHHH
Confidence 79999999988875 99999998642100 0112 2233344444432110 1222 3579999999
Q ss_pred HHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHH
Q psy5743 549 RIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHL 626 (644)
Q Consensus 549 RiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eL 626 (644)
|++|||||+.+|++||||||||+||+.+...+.+.|+++. +++|+|+|||+++.+. .||+|++|++|++++.|+.++.
T Consensus 149 rv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (500)
T TIGR02633 149 LVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTM 228 (500)
T ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccC
Confidence 9999999999999999999999999999999999998864 4689999999999985 4999999999999999987664
No 297
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=2.5e-40 Score=329.75 Aligned_cols=197 Identities=25% Similarity=0.415 Sum_probs=164.5
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCC---CcccHHHHHhcC
Q psy5743 423 LKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTL---FSGTIYENILYG 499 (644)
Q Consensus 423 l~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~L---f~gTIreNI~~g 499 (644)
|++++||+++|+|+||||||||+++|+|+++|++|+|.+||+++. ..|++++|++|++.+ |+.|++||+.++
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~-----~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~ 75 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG-----KGWRHIGYVPQRHEFAWDFPISVAHTVMSG 75 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch-----HhhCcEEEecccccccCCCCccHHHHHHhc
Confidence 578999999999999999999999999999999999999998864 357789999999976 468999999876
Q ss_pred CCC-------CCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCC
Q psy5743 500 VND-------SSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSAL 572 (644)
Q Consensus 500 ~~~-------~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaL 572 (644)
... ....+++++.++++..++.++. + .....||||||||++||||++++|+++||||||++|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~----~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~L 144 (223)
T TIGR03771 76 RTGHIGWLRRPCVADFAAVRDALRRVGLTELA-------D----RPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGL 144 (223)
T ss_pred cccccccccCCcHHHHHHHHHHHHHhCCchhh-------c----CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 210 0012234577777777765443 2 233469999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHc-CCceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHHhcCCCcHHHHHH
Q psy5743 573 DAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLM 638 (644)
Q Consensus 573 D~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eLl~~~~~~y~~l~ 638 (644)
|+.+...+.+.|.++. +++|+|++||+++.+. .||+|+++ +|++++.|+++++.++ ..+.+++
T Consensus 145 D~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~~--~~~~~~~ 209 (223)
T TIGR03771 145 DMPTQELLTELFIELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQDP--APWMTTF 209 (223)
T ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcCh--HHHHHHh
Confidence 9999999999998875 4789999999999875 59999999 7999999999998753 4555554
No 298
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=3.1e-40 Score=369.58 Aligned_cols=224 Identities=24% Similarity=0.421 Sum_probs=178.6
Q ss_pred cEEEEEEEEEcCC--CCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEEC-Ccc---CCCCC--
Q psy5743 399 EIDFNNIRFSYPS--RPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILID-GVD---IKELD-- 470 (644)
Q Consensus 399 ~I~~~~vsf~Y~~--~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~id-g~~---i~~~~-- 470 (644)
-|+++|++++|++ ..+.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++ |.+ +...+
T Consensus 279 ~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~ 358 (520)
T TIGR03269 279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPD 358 (520)
T ss_pred eEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchh
Confidence 4999999999963 123569999999999999999999999999999999999999999999996 643 33333
Q ss_pred -hHHHhcceEEEecCCCCCc-ccHHHHHhcCCC-CCC-CCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhH
Q psy5743 471 -PMYLRSQIGSVSQEPTLFS-GTIYENILYGVN-DSS-SVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQ 546 (644)
Q Consensus 471 -~~~lr~~i~~V~Q~~~Lf~-gTIreNI~~g~~-~~~-~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQ 546 (644)
...+|++++||+|++.+|. -|++||+.++.. ... ...++++.++++..++.+.- .+.........|||||
T Consensus 359 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------~~~~~~~~~~~LSgGq 432 (520)
T TIGR03269 359 GRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEK------AEEILDKYPDELSEGE 432 (520)
T ss_pred hHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCcc------chhhhhCChhhCCHHH
Confidence 2345778999999998887 599999986421 000 01123445555555543200 0001233456799999
Q ss_pred HHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEEEeCCeEEEecCh
Q psy5743 547 KQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSY 623 (644)
Q Consensus 547 kQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~ 623 (644)
|||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|++++.|++
T Consensus 433 ~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~~ 512 (520)
T TIGR03269 433 RHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDP 512 (520)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999999999988753 789999999999885 5999999999999999999
Q ss_pred hHHhc
Q psy5743 624 AHLIK 628 (644)
Q Consensus 624 ~eLl~ 628 (644)
+++.+
T Consensus 513 ~~~~~ 517 (520)
T TIGR03269 513 EEIVE 517 (520)
T ss_pred HHHHh
Confidence 88764
No 299
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-39 Score=332.29 Aligned_cols=212 Identities=22% Similarity=0.319 Sum_probs=171.3
Q ss_pred cEEEEEEEEEcCCC-----------------CCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEE
Q psy5743 399 EIDFNNIRFSYPSR-----------------PDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILI 461 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~-----------------~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i 461 (644)
+|+++||+-.|... ...++|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~ 83 (264)
T PRK13546 4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDR 83 (264)
T ss_pred eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 47777776555321 2346899999999999999999999999999999999999999999999
Q ss_pred CCccCCCCChHHHhcceEEEecCCCCCc-ccHHHHHhcCCCCCCCCCHHHHHH----HHHHHhhccchhhhhcCcccccc
Q psy5743 462 DGVDIKELDPMYLRSQIGSVSQEPTLFS-GTIYENILYGVNDSSSVTKSDIIH----AAKEANAYGFVIDFKNGFDTIVG 536 (644)
Q Consensus 462 dg~~i~~~~~~~lr~~i~~V~Q~~~Lf~-gTIreNI~~g~~~~~~~~~~~i~~----a~~~a~l~~~i~~lp~Gl~T~ig 536 (644)
+| .+++++|++.+++ .|++||+.++... ...+.++..+ +++..++ +..+.
T Consensus 84 ~g-------------~~~~~~~~~~~~~~~tv~enl~~~~~~-~~~~~~~~~~~~~~~l~~~~l-----------~~~~~ 138 (264)
T PRK13546 84 NG-------------EVSVIAISAGLSGQLTGIENIEFKMLC-MGFKRKEIKAMTPKIIEFSEL-----------GEFIY 138 (264)
T ss_pred CC-------------EEeEEecccCCCCCCcHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHcCC-----------chhhc
Confidence 99 3677888887764 6999999874211 0133444433 3333333 33344
Q ss_pred CCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHh-hcCEEEEEeC
Q psy5743 537 ERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIR-KSNQICVLDK 614 (644)
Q Consensus 537 e~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~-~aD~Iivl~~ 614 (644)
.....||||||||++||||++++|++|||||||++||+.+.+.+.+.|.++. .++|+|+|||+++.+. .||+|++|++
T Consensus 139 ~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~ 218 (264)
T PRK13546 139 QPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEG 218 (264)
T ss_pred CCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEEC
Confidence 5667899999999999999999999999999999999999999999998764 4789999999999885 4999999999
Q ss_pred CeEEEecChhHHhcCCCcHHHH
Q psy5743 615 GKIVEIGSYAHLIKNPNSMFNK 636 (644)
Q Consensus 615 G~ive~Gt~~eLl~~~~~~y~~ 636 (644)
|++++.|+++++.+.. ..|.+
T Consensus 219 G~i~~~g~~~~~~~~~-~~~~~ 239 (264)
T PRK13546 219 GKLKDYGELDDVLPKY-EAFLN 239 (264)
T ss_pred CEEEEeCCHHHHHHHh-HHHHH
Confidence 9999999999998763 33433
No 300
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=1.8e-40 Score=322.80 Aligned_cols=177 Identities=31% Similarity=0.502 Sum_probs=147.6
Q ss_pred CCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCC--CChHHHhcceEEEecCC--CCCc
Q psy5743 414 DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKE--LDPMYLRSQIGSVSQEP--TLFS 489 (644)
Q Consensus 414 ~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~--~~~~~lr~~i~~V~Q~~--~Lf~ 489 (644)
++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.. .....+++.++||+|++ .+|.
T Consensus 4 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 83 (190)
T TIGR01166 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFA 83 (190)
T ss_pred ccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhcccc
Confidence 3569999999999999999999999999999999999999999999999999852 23456788999999998 5888
Q ss_pred ccHHHHHhcCCCCCCCCCH----HHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEe
Q psy5743 490 GTIYENILYGVNDSSSVTK----SDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLL 565 (644)
Q Consensus 490 gTIreNI~~g~~~~~~~~~----~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliL 565 (644)
.|++||+.++... ...++ +++.++++..++.++.. .....||||||||++||||++++|+++||
T Consensus 84 ~tv~~nl~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~laral~~~p~llll 151 (190)
T TIGR01166 84 ADVDQDVAFGPLN-LGLSEAEVERRVREALTAVGASGLRE-----------RPTHCLSGGEKKRVAIAGAVAMRPDVLLL 151 (190)
T ss_pred ccHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHcCchhhhh-----------CChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999999885321 01222 34555666666544332 23467999999999999999999999999
Q ss_pred ecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchH
Q psy5743 566 DEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLST 602 (644)
Q Consensus 566 DEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~ 602 (644)
||||++||+.+.+.+.+.|.+.. +++|+|+|||+++.
T Consensus 152 DEPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 152 DEPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 99999999999999999998874 47899999999864
No 301
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-39 Score=350.46 Aligned_cols=214 Identities=25% Similarity=0.304 Sum_probs=172.5
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
.++++|++|+|++...+++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 21 mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~------------ 88 (549)
T PRK13545 21 FDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA------------ 88 (549)
T ss_pred eeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee------------
Confidence 58999999999864345799999999999999999999999999999999999999999999999651
Q ss_pred EEEecCCCCCc-ccHHHHHhcCCCCCCCCCHHHH----HHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHH
Q psy5743 479 GSVSQEPTLFS-GTIYENILYGVNDSSSVTKSDI----IHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIA 553 (644)
Q Consensus 479 ~~V~Q~~~Lf~-gTIreNI~~g~~~~~~~~~~~i----~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLA 553 (644)
++.+.+.++. .|++||+.++... ...+.++. .++++..++.++ .......||||||||++||
T Consensus 89 -~i~~~~~l~~~lTV~EnL~l~~~~-~~~~~~e~~e~i~elLe~lgL~~~-----------ld~~~~~LSGGQrQRVaLA 155 (549)
T PRK13545 89 -LIAISSGLNGQLTGIENIELKGLM-MGLTKEKIKEIIPEIIEFADIGKF-----------IYQPVKTYSSGMKSRLGFA 155 (549)
T ss_pred -eEEeccccCCCCcHHHHHHhhhhh-cCCCHHHHHHHHHHHHHHcCChhH-----------hhCCcccCCHHHHHHHHHH
Confidence 2333444443 5999999874310 01333333 344555554433 2334568999999999999
Q ss_pred HHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhh-cCEEEEEeCCeEEEecChhHHhcCCC
Q psy5743 554 RALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLIKNPN 631 (644)
Q Consensus 554 RAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~~-aD~Iivl~~G~ive~Gt~~eLl~~~~ 631 (644)
|||+.+|++|||||||++||+.+...+.+.|.++. +++|+|+|||+++.+.. ||+|++|++|++++.|+++++..+ -
T Consensus 156 rAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~~-~ 234 (549)
T PRK13545 156 ISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDH-Y 234 (549)
T ss_pred HHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhh-H
Confidence 99999999999999999999999999999998864 47899999999998854 999999999999999999999864 3
Q ss_pred cHHHHHH
Q psy5743 632 SMFNKLM 638 (644)
Q Consensus 632 ~~y~~l~ 638 (644)
..|.+.+
T Consensus 235 ~~~~~~~ 241 (549)
T PRK13545 235 DEFLKKY 241 (549)
T ss_pred HHHHHHH
Confidence 4454433
No 302
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=3.7e-40 Score=328.60 Aligned_cols=196 Identities=29% Similarity=0.309 Sum_probs=156.1
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
+.++|++.+|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++.... ...
T Consensus 23 l~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~-----~~~- 93 (224)
T cd03220 23 LGILGRKGEVGE---FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLG-----LGG- 93 (224)
T ss_pred hhhhhhhhhcCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhhc-----ccc-
Confidence 667778888853 57999999999999999999999999999999999999999999999998764211 111
Q ss_pred EEecCCCCCcccHHHHHhcCCCCCCCCCHH----HHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHH
Q psy5743 480 SVSQEPTLFSGTIYENILYGVNDSSSVTKS----DIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARA 555 (644)
Q Consensus 480 ~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~----~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARA 555 (644)
.+..+.|++||+.++... ...+.+ ++.++++..++ +...++.+ ..||||||||++||||
T Consensus 94 -----~~~~~~tv~enl~~~~~~-~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~~----~~LSgG~~qrv~lara 156 (224)
T cd03220 94 -----GFNPELTGRENIYLNGRL-LGLSRKEIDEKIDEIIEFSEL-------GDFIDLPV----KTYSSGMKARLAFAIA 156 (224)
T ss_pred -----cCCCCCcHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHcCC-------hhhhhCCh----hhCCHHHHHHHHHHHH
Confidence 122357999999876421 012222 23333443333 22334443 5799999999999999
Q ss_pred HccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC-CceEEEEccCchHHh-hcCEEEEEeCCeEEEec
Q psy5743 556 LIKKSKILLLDEATSALDAENEYLVQSAIEKLIE-GKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIG 621 (644)
Q Consensus 556 ll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~-~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~G 621 (644)
++++|+++||||||++||+.+.+.+.+.|.+..+ ++|+|+|||+++.+. .||+|++|++|++++.|
T Consensus 157 l~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 157 TALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999999988643 589999999999875 59999999999998865
No 303
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.5e-40 Score=367.79 Aligned_cols=218 Identities=24% Similarity=0.401 Sum_probs=176.5
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCC-CCCcEEEECCccCCCCCh-HHHhc
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD-PQNGKILIDGVDIKELDP-MYLRS 476 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~-p~~G~I~idg~~i~~~~~-~~lr~ 476 (644)
-|+++|++++|+...+.++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|.++...+. +.+++
T Consensus 259 ~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~ 338 (506)
T PRK13549 259 ILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQ 338 (506)
T ss_pred eEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHC
Confidence 4899999999953223569999999999999999999999999999999999999 599999999999875543 44577
Q ss_pred ceEEEecCC---CCCc-ccHHHHHhcCCCC-CCC---CCH----HHHHHHHHHHhhccchhhhhcCccc-cccCCCCCCC
Q psy5743 477 QIGSVSQEP---TLFS-GTIYENILYGVND-SSS---VTK----SDIIHAAKEANAYGFVIDFKNGFDT-IVGERGIMLS 543 (644)
Q Consensus 477 ~i~~V~Q~~---~Lf~-gTIreNI~~g~~~-~~~---~~~----~~i~~a~~~a~l~~~i~~lp~Gl~T-~ige~G~~LS 543 (644)
.++||+|++ .+|. -|+.||+.++... ... .+. +++.++++..++ +. ........||
T Consensus 339 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~~LS 407 (506)
T PRK13549 339 GIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKV-----------KTASPELAIARLS 407 (506)
T ss_pred CCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCc-----------cCCCcccccccCC
Confidence 899999996 3554 6999999875210 000 111 223333333333 21 2234456899
Q ss_pred hhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHh-hcCEEEEEeCCeEEEec
Q psy5743 544 GGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIG 621 (644)
Q Consensus 544 GGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~G 621 (644)
||||||++||||++.+|++||||||||+||+.+.+.+.+.|.++. +++|+|+|||+++.+. .||++++|++|+++..|
T Consensus 408 gG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~ 487 (506)
T PRK13549 408 GGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDL 487 (506)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEe
Confidence 999999999999999999999999999999999999999998864 4789999999999885 59999999999999999
Q ss_pred ChhHHh
Q psy5743 622 SYAHLI 627 (644)
Q Consensus 622 t~~eLl 627 (644)
+.+++.
T Consensus 488 ~~~~~~ 493 (506)
T PRK13549 488 INHNLT 493 (506)
T ss_pred ccccCC
Confidence 988763
No 304
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=4e-40 Score=321.54 Aligned_cols=190 Identities=23% Similarity=0.358 Sum_probs=161.5
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
|+++|++++|++ +.++ ++||++++||+++|+|+||||||||+++|+|+++|++|+|.+||.++...+ ++.++
T Consensus 2 l~~~~l~~~~~~---~~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~----~~~~~ 73 (195)
T PRK13541 2 LSLHQLQFNIEQ---KNLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA----KPYCT 73 (195)
T ss_pred eEEEEeeEEECC---cEEE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhh----hhhEE
Confidence 689999999963 3455 599999999999999999999999999999999999999999999987643 35699
Q ss_pred EEecCCC-CCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHcc
Q psy5743 480 SVSQEPT-LFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIK 558 (644)
Q Consensus 480 ~V~Q~~~-Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~ 558 (644)
|++|++. +|+.|++|||.++.+.. ..++++.++++..++.++ ....+.+||||||||++||||+++
T Consensus 74 ~~~~~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~~rl~la~al~~ 140 (195)
T PRK13541 74 YIGHNLGLKLEMTVFENLKFWSEIY--NSAETLYAAIHYFKLHDL-----------LDEKCYSLSSGMQKIVAIARLIAC 140 (195)
T ss_pred eccCCcCCCccCCHHHHHHHHHHhc--ccHHHHHHHHHHcCCHhh-----------hccChhhCCHHHHHHHHHHHHHhc
Confidence 9999875 47789999999865421 135566666677665433 334567899999999999999999
Q ss_pred CCCEEEeecccCCCCHHHHHHHHHHHHHH-cCCceEEEEccCchHHhhcCEEE
Q psy5743 559 KSKILLLDEATSALDAENEYLVQSAIEKL-IEGKTVLTIAHRLSTIRKSNQIC 610 (644)
Q Consensus 559 ~p~IliLDEaTSaLD~~~e~~i~~~l~~~-~~~~TvI~IaHrl~~i~~aD~Ii 610 (644)
+|+++||||||++||+.+.+.+.+.|++. .+++|+|+|||+++.++.||.|.
T Consensus 141 ~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~ 193 (195)
T PRK13541 141 QSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKSAQILQ 193 (195)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccchhheec
Confidence 99999999999999999999999999753 45799999999999999999874
No 305
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=4.3e-40 Score=368.48 Aligned_cols=214 Identities=26% Similarity=0.453 Sum_probs=174.2
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccC--CCCCcEEEEC---------------
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLY--DPQNGKILID--------------- 462 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~--~p~~G~I~id--------------- 462 (644)
|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+. +|++|+|.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~ 77 (520)
T TIGR03269 1 IEVKNLTKKFDG---KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSK 77 (520)
T ss_pred CEEEEEEEEECC---eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccc
Confidence 578999999963 46999999999999999999999999999999999996 7999999997
Q ss_pred --------CccCC-------CCC---hHHHhcceEEEecC-CCCCc-ccHHHHHhcCCCCCCCCCH----HHHHHHHHHH
Q psy5743 463 --------GVDIK-------ELD---PMYLRSQIGSVSQE-PTLFS-GTIYENILYGVNDSSSVTK----SDIIHAAKEA 518 (644)
Q Consensus 463 --------g~~i~-------~~~---~~~lr~~i~~V~Q~-~~Lf~-gTIreNI~~g~~~~~~~~~----~~i~~a~~~a 518 (644)
|.++. ..+ ...+|+.++||+|+ +.+|. -|++||+.++... ...+. +++.++++..
T Consensus 78 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~ 156 (520)
T TIGR03269 78 VGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEE-IGYEGKEAVGRAVDLIEMV 156 (520)
T ss_pred cccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHc
Confidence 33331 111 13467889999998 56776 5999999875221 01222 3344455555
Q ss_pred hhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEE
Q psy5743 519 NAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTI 596 (644)
Q Consensus 519 ~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~I 596 (644)
++.+ ........||||||||++|||||+.+|++||||||||+||+++.+.+.+.|+++.+ ++|+|+|
T Consensus 157 gl~~-----------~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviiv 225 (520)
T TIGR03269 157 QLSH-----------RITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLT 225 (520)
T ss_pred CChh-----------hhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEE
Confidence 5432 23344578999999999999999999999999999999999999999999988743 7899999
Q ss_pred ccCchHHh-hcCEEEEEeCCeEEEecChhHHhc
Q psy5743 597 AHRLSTIR-KSNQICVLDKGKIVEIGSYAHLIK 628 (644)
Q Consensus 597 aHrl~~i~-~aD~Iivl~~G~ive~Gt~~eLl~ 628 (644)
||+++.+. .||+|++|++|++++.|+++++..
T Consensus 226 tHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 258 (520)
T TIGR03269 226 SHWPEVIEDLSDKAIWLENGEIKEEGTPDEVVA 258 (520)
T ss_pred eCCHHHHHHhcCEEEEEeCCEEeeecCHHHHHH
Confidence 99999985 599999999999999999988764
No 306
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=1.7e-39 Score=328.30 Aligned_cols=228 Identities=35% Similarity=0.499 Sum_probs=189.8
Q ss_pred cEEEEEEEEEcCCCC--------CCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCC
Q psy5743 399 EIDFNNIRFSYPSRP--------DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELD 470 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~--------~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~ 470 (644)
-++.+||...||-+. .-.+.++|||++++||+++|||+||||||||...|+|+.+++ |+|.++|.++..++
T Consensus 276 ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~~ 354 (534)
T COG4172 276 LLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLS 354 (534)
T ss_pred eEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccccC
Confidence 488999999997421 134689999999999999999999999999999999999776 99999999999998
Q ss_pred hHH---HhcceEEEecCCC-CCc--ccHHHHHhcCC----CCCCC-CCHHHHHHHHHHHhhccchhhhhcCccccccCCC
Q psy5743 471 PMY---LRSQIGSVSQEPT-LFS--GTIYENILYGV----NDSSS-VTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERG 539 (644)
Q Consensus 471 ~~~---lr~~i~~V~Q~~~-Lf~--gTIreNI~~g~----~~~~~-~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G 539 (644)
.++ +|+++-+|+|||+ =+| .||.+-|.-|- |.... --++++.+|++.+|++.-.. ..-.
T Consensus 355 ~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r----------~RYP 424 (534)
T COG4172 355 RKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATR----------NRYP 424 (534)
T ss_pred hhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHh----------hcCC
Confidence 766 5789999999998 332 57766665442 22110 12456777888888765432 1223
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc--CCceEEEEccCchHHhh-cCEEEEEeCCe
Q psy5743 540 IMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI--EGKTVLTIAHRLSTIRK-SNQICVLDKGK 616 (644)
Q Consensus 540 ~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~--~~~TvI~IaHrl~~i~~-aD~Iivl~~G~ 616 (644)
..+|||||||||||||+.-+|++++|||||||||..-..+|.+.++++. .+-+=++|+|+|..++. ||+|+||.+|+
T Consensus 425 hEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~Gk 504 (534)
T COG4172 425 HEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGK 504 (534)
T ss_pred cccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCE
Confidence 5799999999999999999999999999999999999999999998864 46799999999999965 99999999999
Q ss_pred EEEecChhHHhcCCCcHHHHH
Q psy5743 617 IVEIGSYAHLIKNPNSMFNKL 637 (644)
Q Consensus 617 ive~Gt~~eLl~~~~~~y~~l 637 (644)
|||+|+-+++.+++...|.+-
T Consensus 505 iVE~G~~~~if~~P~~~YT~~ 525 (534)
T COG4172 505 IVEQGPTEAVFANPQHEYTRA 525 (534)
T ss_pred EeeeCCHHHHhcCCCcHHHHH
Confidence 999999999999888888653
No 307
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-39 Score=303.43 Aligned_cols=216 Identities=28% Similarity=0.472 Sum_probs=186.3
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
|+.+|+|++-.+ +.+|+++||+++|||.+||+||+|+|||||+|.|.|.+.|++|++.++|++++.+.+.++.++-+
T Consensus 2 i~a~nls~~~~G---r~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~ra 78 (259)
T COG4559 2 IRAENLSYSLAG---RRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRA 78 (259)
T ss_pred eeeeeeEEEeec---ceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhh
Confidence 788999998864 46899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCC-CcccHHHHHhcCCCCCC---CCCHHH--HHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHH
Q psy5743 480 SVSQEPTL-FSGTIYENILYGVNDSS---SVTKSD--IIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIA 553 (644)
Q Consensus 480 ~V~Q~~~L-f~gTIreNI~~g~~~~~---~~~~~~--i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLA 553 (644)
++||+..| |.=|++|-+.+|+-... +..+++ ..+++..+++..+- |..-..|||||+||+.+|
T Consensus 79 VlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la-----------~R~y~~LSGGEqQRVqlA 147 (259)
T COG4559 79 VLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLA-----------GRDYRTLSGGEQQRVQLA 147 (259)
T ss_pred hcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhh-----------ccchhhcCchHHHHHHHH
Confidence 99999874 89999999999984321 122333 45566777655432 233357999999999999
Q ss_pred HHHcc------CCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhH
Q psy5743 554 RALIK------KSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAH 625 (644)
Q Consensus 554 RAll~------~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~e 625 (644)
|.|.+ ++++|+||||||+||..-...+++..+++. .+..|+.|-|+|... ..||||++|.+||++..|++++
T Consensus 148 RvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~ 227 (259)
T COG4559 148 RVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQD 227 (259)
T ss_pred HHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHH
Confidence 99974 345999999999999999999999998875 478999999999976 6799999999999999999999
Q ss_pred HhcC
Q psy5743 626 LIKN 629 (644)
Q Consensus 626 Ll~~ 629 (644)
.+..
T Consensus 228 vlt~ 231 (259)
T COG4559 228 VLTD 231 (259)
T ss_pred hcCH
Confidence 8853
No 308
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=8.6e-40 Score=294.57 Aligned_cols=210 Identities=26% Similarity=0.377 Sum_probs=176.5
Q ss_pred cEEEEEEEEEcCCC-CCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHH---
Q psy5743 399 EIDFNNIRFSYPSR-PDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYL--- 474 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~-~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~l--- 474 (644)
-|++++++..-+.. .+-.||++|+|.|++||.+|||||||||||||+-+|.|+-+|++|+|.+.|+++..++.+..
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 47888888777643 23468999999999999999999999999999999999999999999999999999997643
Q ss_pred h-cceEEEecCCCCC-cccHHHHHhcCCCCCCC-C--CHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHH
Q psy5743 475 R-SQIGSVSQEPTLF-SGTIYENILYGVNDSSS-V--TKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQR 549 (644)
Q Consensus 475 r-~~i~~V~Q~~~Lf-~gTIreNI~~g~~~~~~-~--~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQR 549 (644)
| +++|+|+|..+|. +-|-.||+.+-..-..+ . ..+.-.+.++.+|+.+.+...| .+||||++||
T Consensus 86 R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP-----------~qLSGGEQQR 154 (228)
T COG4181 86 RARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYP-----------AQLSGGEQQR 154 (228)
T ss_pred hccceeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCc-----------cccCchHHHH
Confidence 3 4799999999977 57999999864321110 1 1222445566676666555554 6899999999
Q ss_pred HHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc--CCceEEEEccCchHHhhcCEEEEEeCCeEEE
Q psy5743 550 IAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI--EGKTVLTIAHRLSTIRKSNQICVLDKGKIVE 619 (644)
Q Consensus 550 iaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~--~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive 619 (644)
+|||||+...|+|||=||||-+||.+|-.+|.+.+..+. .+.|.|+|||+++...+|||++.|.+|++++
T Consensus 155 VAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 155 VALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVE 226 (228)
T ss_pred HHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecceecc
Confidence 999999999999999999999999999999999987764 4779999999999999999999999999986
No 309
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.1e-40 Score=300.54 Aligned_cols=220 Identities=34% Similarity=0.473 Sum_probs=184.5
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCC---------
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKEL--------- 469 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~--------- 469 (644)
.++++|++-+|.. ..+|++|||+.++|+.++|+|.|||||||+++++.=+-.|+.|+|.++|..|+.-
T Consensus 6 ~l~v~dlHK~~G~---~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ 82 (256)
T COG4598 6 ALEVEDLHKRYGE---HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKP 82 (256)
T ss_pred ceehhHHHhhccc---chhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeee
Confidence 6899999999964 3599999999999999999999999999999999999999999999999887532
Q ss_pred -C---hHHHhcceEEEecCCCCCc-ccHHHHHhcCCCCC-CCCCH----HHHHHHHHHHhhccchhhhhcCccccccCCC
Q psy5743 470 -D---PMYLRSQIGSVSQEPTLFS-GTIYENILYGVNDS-SSVTK----SDIIHAAKEANAYGFVIDFKNGFDTIVGERG 539 (644)
Q Consensus 470 -~---~~~lr~~i~~V~Q~~~Lf~-gTIreNI~~g~~~~-~~~~~----~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G 539 (644)
| .+.+|.+.++|+|+..|.+ .|+.||..-+ |-. -..+. |+-+..+.++|+.+--...|
T Consensus 83 ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEa-PvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP----------- 150 (256)
T COG4598 83 ADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEA-PVHVLGVSKAEAIERAEKYLAKVGIAEKADAYP----------- 150 (256)
T ss_pred CCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhc-chHhhcCCHHHHHHHHHHHHHHhCchhhhhcCc-----------
Confidence 2 3567899999999999987 7999998633 100 00122 22334466677665444333
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhh-cCEEEEEeCCeE
Q psy5743 540 IMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIRK-SNQICVLDKGKI 617 (644)
Q Consensus 540 ~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~~-aD~Iivl~~G~i 617 (644)
..|||||.||.+|||||.-+|+++++||||||||++--..+++.++++. .+||.++|||.+...++ +.+|+.+.+|.|
T Consensus 151 ~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~i 230 (256)
T COG4598 151 AHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKI 230 (256)
T ss_pred cccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeeccee
Confidence 6799999999999999999999999999999999998888888888875 48999999999999977 689999999999
Q ss_pred EEecChhHHhcCCCcH
Q psy5743 618 VEIGSYAHLIKNPNSM 633 (644)
Q Consensus 618 ve~Gt~~eLl~~~~~~ 633 (644)
-|+|+++++..++.+.
T Consensus 231 EE~G~P~qvf~nP~S~ 246 (256)
T COG4598 231 EEEGPPEQVFGNPQSP 246 (256)
T ss_pred cccCChHHHhcCCCCH
Confidence 9999999999876653
No 310
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=5.9e-40 Score=315.06 Aligned_cols=216 Identities=29% Similarity=0.495 Sum_probs=185.0
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhc-ce
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRS-QI 478 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~-~i 478 (644)
++++|++-+|.+ -.+++|+||++++||+++|+||+||||||++|++.|+|+|++|+|.++|.||..+++....+ -|
T Consensus 5 L~v~~l~k~FGG---l~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi 81 (250)
T COG0411 5 LEVRGLSKRFGG---LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGI 81 (250)
T ss_pred eeeccceeecCC---EEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccc
Confidence 578999999964 46899999999999999999999999999999999999999999999999999999888754 49
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCCCCC---------CC--CHHH----HHHHHHHHhhccchhhhhcCccccccCCCCCC
Q psy5743 479 GSVSQEPTLFSG-TIYENILYGVNDSS---------SV--TKSD----IIHAAKEANAYGFVIDFKNGFDTIVGERGIML 542 (644)
Q Consensus 479 ~~V~Q~~~Lf~g-TIreNI~~g~~~~~---------~~--~~~~----i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~L 542 (644)
+--+|.+.+|.+ |+.||+..+.-... .. .+++ ..+.++.+ |++-.-.+...+|
T Consensus 82 ~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~v-----------gL~~~a~~~A~~L 150 (250)
T COG0411 82 ARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFV-----------GLGELADRPAGNL 150 (250)
T ss_pred eeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHc-----------CCchhhcchhhcC
Confidence 999999999975 99999998732100 00 1222 22222333 5555566677789
Q ss_pred ChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHH-hhcCEEEEEeCCeEEE
Q psy5743 543 SGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTI-RKSNQICVLDKGKIVE 619 (644)
Q Consensus 543 SGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive 619 (644)
|+||+.|+-|||||..+|++|+||||.++|.++....+.+.|+++.+ +.|+++|-|+++.+ .-||||+||+.|+++.
T Consensus 151 syG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IA 230 (250)
T COG0411 151 SYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIA 230 (250)
T ss_pred ChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcc
Confidence 99999999999999999999999999999999999999999999875 48999999999998 4599999999999999
Q ss_pred ecChhHHhcC
Q psy5743 620 IGSYAHLIKN 629 (644)
Q Consensus 620 ~Gt~~eLl~~ 629 (644)
+|+++|..++
T Consensus 231 eG~P~eV~~d 240 (250)
T COG0411 231 EGTPEEVRNN 240 (250)
T ss_pred cCCHHHHhcC
Confidence 9999999864
No 311
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-39 Score=361.45 Aligned_cols=212 Identities=19% Similarity=0.312 Sum_probs=171.6
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCCh-HHHhcc
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDP-MYLRSQ 477 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~-~~lr~~ 477 (644)
-|+++|+++.|. .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|+.
T Consensus 265 ~l~~~~l~~~~~-----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 339 (510)
T PRK09700 265 VFEVRNVTSRDR-----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKG 339 (510)
T ss_pred EEEEeCccccCC-----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCC
Confidence 499999998762 28999999999999999999999999999999999999999999999999876554 456778
Q ss_pred eEEEecCC---CCCc-ccHHHHHhcCCCCC----C---C-CC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCC
Q psy5743 478 IGSVSQEP---TLFS-GTIYENILYGVNDS----S---S-VT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIM 541 (644)
Q Consensus 478 i~~V~Q~~---~Lf~-gTIreNI~~g~~~~----~---~-~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~ 541 (644)
++||+|++ .+|. -|++||+.++.... . . .+ .+++.++++..++. ++-.+++ ...
T Consensus 340 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~------~~~~~~~----~~~ 409 (510)
T PRK09700 340 MAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALK------CHSVNQN----ITE 409 (510)
T ss_pred cEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCC------CCCccCc----ccc
Confidence 99999984 5665 59999998763200 0 0 01 12233333433331 0122333 456
Q ss_pred CChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHH-hhcCEEEEEeCCeEEE
Q psy5743 542 LSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTI-RKSNQICVLDKGKIVE 619 (644)
Q Consensus 542 LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive 619 (644)
||||||||++|||||+.+|+|||||||||+||..+...+.+.|+++. +++|+|+|||+++.+ ..||+|++|++|++++
T Consensus 410 LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~ 489 (510)
T PRK09700 410 LSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQ 489 (510)
T ss_pred CChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999998864 478999999999877 5699999999999999
Q ss_pred ecChhH
Q psy5743 620 IGSYAH 625 (644)
Q Consensus 620 ~Gt~~e 625 (644)
.|+..+
T Consensus 490 ~~~~~~ 495 (510)
T PRK09700 490 ILTNRD 495 (510)
T ss_pred EecCcc
Confidence 887644
No 312
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=5.1e-39 Score=391.12 Aligned_cols=217 Identities=22% Similarity=0.378 Sum_probs=187.5
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcc
Q psy5743 398 GEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQ 477 (644)
Q Consensus 398 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~ 477 (644)
..|+++|++++|++ .++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.|+.. +...+|+.
T Consensus 927 ~~L~I~nLsK~y~~-~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~-~~~~~r~~ 1004 (2272)
T TIGR01257 927 PGVCVKNLVKIFEP-SGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQS 1004 (2272)
T ss_pred ceEEEEeEEEEecC-CCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-hHHHHhhc
Confidence 35999999999963 24679999999999999999999999999999999999999999999999999975 56778999
Q ss_pred eEEEecCCCCCc-ccHHHHHhcCCCCCCCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHH
Q psy5743 478 IGSVSQEPTLFS-GTIYENILYGVNDSSSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAI 552 (644)
Q Consensus 478 i~~V~Q~~~Lf~-gTIreNI~~g~~~~~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaL 552 (644)
+||+||++.+|+ -|++|||.++..- ...+ ++++.+.++..++ +........+||||||||++|
T Consensus 1005 IG~~pQ~~~L~~~LTV~E~L~f~~~l-kg~~~~~~~~~v~~lL~~vgL-----------~~~~~~~~~~LSGGqKQRLsL 1072 (2272)
T TIGR01257 1005 LGMCPQHNILFHHLTVAEHILFYAQL-KGRSWEEAQLEMEAMLEDTGL-----------HHKRNEEAQDLSGGMQRKLSV 1072 (2272)
T ss_pred EEEEecCCcCCCCCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHcCC-----------chhhcCChhhCCHHHHHHHHH
Confidence 999999999997 5999999875321 0122 2344555555544 333445567899999999999
Q ss_pred HHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHHhc
Q psy5743 553 ARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHLIK 628 (644)
Q Consensus 553 ARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eLl~ 628 (644)
||||+.+|+|+|||||||+||+.+.+.+.+.|++..+++|+|++||+++.+. .||+|++|++|++++.|+.++|.+
T Consensus 1073 ArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~ 1149 (2272)
T TIGR01257 1073 AIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKN 1149 (2272)
T ss_pred HHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHH
Confidence 9999999999999999999999999999999999878899999999999985 599999999999999999999865
No 313
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=4.3e-40 Score=304.30 Aligned_cols=222 Identities=29% Similarity=0.492 Sum_probs=183.6
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhc-c
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRS-Q 477 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~-~ 477 (644)
.+..+|+.-+|. .++|++++||+|++||.|++.||+|+||||....+.|+.+|++|+|.+||.|+..++...-.+ -
T Consensus 4 ~L~a~~l~K~y~---kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlG 80 (243)
T COG1137 4 TLVAENLAKSYK---KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLG 80 (243)
T ss_pred EEEehhhhHhhC---CeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcC
Confidence 478899999996 357999999999999999999999999999999999999999999999999999999876543 5
Q ss_pred eEEEecCCCCCcc-cHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHH
Q psy5743 478 IGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARAL 556 (644)
Q Consensus 478 i~~V~Q~~~Lf~g-TIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAl 556 (644)
|||+||++.+|.+ |++|||..--+- .+...+++.+...+++.++.+ .+...-...|..||||||.|+-|||||
T Consensus 81 igYLpQE~SIFr~LtV~dNi~~vlE~----~~~d~~~~~~~~~l~~LL~ef--~i~hlr~~~a~sLSGGERRR~EIARaL 154 (243)
T COG1137 81 IGYLPQEASIFRKLTVEDNIMAVLEI----REKDLKKAERKEELDALLEEF--HITHLRDSKAYSLSGGERRRVEIARAL 154 (243)
T ss_pred cccccccchHhhcCcHHHHHHHHHhh----hhcchhHHHHHHHHHHHHHHh--chHHHhcCcccccccchHHHHHHHHHH
Confidence 9999999999986 999999865431 111112222222222223322 344455677899999999999999999
Q ss_pred ccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC-CceEEEEccCc-hHHhhcCEEEEEeCCeEEEecChhHHhcC
Q psy5743 557 IKKSKILLLDEATSALDAENEYLVQSAIEKLIE-GKTVLTIAHRL-STIRKSNQICVLDKGKIVEIGSYAHLIKN 629 (644)
Q Consensus 557 l~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~-~~TvI~IaHrl-~~i~~aD~Iivl~~G~ive~Gt~~eLl~~ 629 (644)
..+|+.++||||++++|+.+-..|++.++.+.. +.-+++--|+. +|+.-|||.|++.+|+|..+|+++|++++
T Consensus 155 a~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n 229 (243)
T COG1137 155 AANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNN 229 (243)
T ss_pred hcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcC
Confidence 999999999999999999999999999988765 44555555774 58999999999999999999999999975
No 314
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=3.4e-39 Score=338.53 Aligned_cols=188 Identities=36% Similarity=0.564 Sum_probs=158.6
Q ss_pred EECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcc-cHHHHHhcCCCCCCCCC----
Q psy5743 433 VIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVT---- 507 (644)
Q Consensus 433 IvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~g-TIreNI~~g~~~~~~~~---- 507 (644)
|+||||||||||+++|+|+++|++|+|.+||.++...++ .++.++||+|++.+|.. |++||+.|+.... ..+
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~--~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~-~~~~~~~ 77 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPP--HLRHINMVFQSYALFPHMTVEENVAFGLKMR-KVPRAEI 77 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEEEEecCccccCCCcHHHHHHHHHhhc-CCCHHHH
Confidence 689999999999999999999999999999999987665 46789999999999975 9999999874210 122
Q ss_pred HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHH
Q psy5743 508 KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKL 587 (644)
Q Consensus 508 ~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~ 587 (644)
++++.++++..++.++.. ....+||||||||++|||||+++|+++|||||||+||+.+...+.+.|+++
T Consensus 78 ~~~~~~~l~~~~l~~~~~-----------~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l 146 (325)
T TIGR01187 78 KPRVLEALRLVQLEEFAD-----------RKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTI 146 (325)
T ss_pred HHHHHHHHHHcCCcchhc-----------CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 234555666666554433 334689999999999999999999999999999999999999999999887
Q ss_pred cC--CceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHHhcCCCcHH
Q psy5743 588 IE--GKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHLIKNPNSMF 634 (644)
Q Consensus 588 ~~--~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eLl~~~~~~y 634 (644)
.+ ++|+|+|||+++.+. .||+|++|++|++++.|+++++.+.+...|
T Consensus 147 ~~~~g~tiiivTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~~~~~~~ 196 (325)
T TIGR01187 147 QEQLGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEEPANLF 196 (325)
T ss_pred HHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCcHH
Confidence 53 789999999999865 599999999999999999999987644434
No 315
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=4.8e-37 Score=373.98 Aligned_cols=217 Identities=20% Similarity=0.293 Sum_probs=183.6
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcc
Q psy5743 398 GEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQ 477 (644)
Q Consensus 398 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~ 477 (644)
.-|+++|++++|++ ..+++++|+||+|++||++||+||||||||||+|+|+|+.+|++|+|.++|.++.. +....|++
T Consensus 1936 ~~L~v~nLsK~Y~~-~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~-~~~~~r~~ 2013 (2272)
T TIGR01257 1936 DILRLNELTKVYSG-TSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQN 2013 (2272)
T ss_pred ceEEEEEEEEEECC-CCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcc-hHHHHhhh
Confidence 35999999999974 23579999999999999999999999999999999999999999999999999975 45677889
Q ss_pred eEEEecCCCCCc-ccHHHHHhcCCCCCCCCCHH----HHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHH
Q psy5743 478 IGSVSQEPTLFS-GTIYENILYGVNDSSSVTKS----DIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAI 552 (644)
Q Consensus 478 i~~V~Q~~~Lf~-gTIreNI~~g~~~~~~~~~~----~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaL 552 (644)
|||+||++.++. -|++||+.+...- ...+.+ .+.++++..++.++ .......||||||||++|
T Consensus 2014 IGy~pQ~~~L~~~LTv~E~L~l~a~l-~g~~~~~~~~~v~~lLe~lgL~~~-----------~dk~~~~LSGGqKqRLsl 2081 (2272)
T TIGR01257 2014 MGYCPQFDAIDDLLTGREHLYLYARL-RGVPAEEIEKVANWSIQSLGLSLY-----------ADRLAGTYSGGNKRKLST 2081 (2272)
T ss_pred EEEEeccccCCCCCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHcCCHHH-----------hcCChhhCCHHHHHHHHH
Confidence 999999999886 5999999864210 012222 23344555554332 233346799999999999
Q ss_pred HHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHHhc
Q psy5743 553 ARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHLIK 628 (644)
Q Consensus 553 ARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eLl~ 628 (644)
||||+.+|+|++||||||+||+.+.+.+.+.|+++. +++|+|++||+++.+. -||||++|++|++++.|+.++|.+
T Consensus 2082 A~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~ 2159 (2272)
T TIGR01257 2082 AIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKS 2159 (2272)
T ss_pred HHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHH
Confidence 999999999999999999999999999999998864 5799999999999885 599999999999999999999854
No 316
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=5.2e-39 Score=391.18 Aligned_cols=216 Identities=28% Similarity=0.439 Sum_probs=183.3
Q ss_pred cEEEEEEEEEcCCC-CCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCC---CCCcEEEECCccCCCCChHHH
Q psy5743 399 EIDFNNIRFSYPSR-PDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD---PQNGKILIDGVDIKELDPMYL 474 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~-~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~---p~~G~I~idg~~i~~~~~~~l 474 (644)
.++++||+++|+.+ .++.+|+|||++++|||++||+||||||||||+++|+|..+ |++|+|.+||+++. ..+
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~~ 834 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSF 834 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----hhh
Confidence 37899999999632 24579999999999999999999999999999999999998 78999999999985 257
Q ss_pred hcceEEEecCCC-CCcccHHHHHhcCCCCC--CCCCHH----HHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHH
Q psy5743 475 RSQIGSVSQEPT-LFSGTIYENILYGVNDS--SSVTKS----DIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQK 547 (644)
Q Consensus 475 r~~i~~V~Q~~~-Lf~gTIreNI~~g~~~~--~~~~~~----~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQk 547 (644)
|+.+|||+|++. ++..|+|||+.++..-. ...+++ ++.++++..++ .+-.|+.||+.|.+||||||
T Consensus 835 ~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L-------~~~~d~~v~~~~~~LSgGqr 907 (1394)
T TIGR00956 835 QRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEM-------ESYADAVVGVPGEGLNVEQR 907 (1394)
T ss_pred hcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCC-------hhhCCCeeCCCCCCCCHHHh
Confidence 889999999875 56689999999863100 013333 34455555554 34579999999999999999
Q ss_pred HHHHHHHHHccCCC-EEEeecccCCCCHHHHHHHHHHHHHH-cCCceEEEEccCchHH--hhcCEEEEEeCC-eEEEecC
Q psy5743 548 QRIAIARALIKKSK-ILLLDEATSALDAENEYLVQSAIEKL-IEGKTVLTIAHRLSTI--RKSNQICVLDKG-KIVEIGS 622 (644)
Q Consensus 548 QRiaLARAll~~p~-IliLDEaTSaLD~~~e~~i~~~l~~~-~~~~TvI~IaHrl~~i--~~aD~Iivl~~G-~ive~Gt 622 (644)
||++|||||+.+|+ ||+||||||+||+.+...|.+.|+++ .+++|+|+++|+++.. ..+|+|++|++| ++++.|+
T Consensus 908 qRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~ 987 (1394)
T TIGR00956 908 KRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGD 987 (1394)
T ss_pred hHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECC
Confidence 99999999999997 99999999999999999999999987 4579999999999973 689999999997 9999998
Q ss_pred hhH
Q psy5743 623 YAH 625 (644)
Q Consensus 623 ~~e 625 (644)
.++
T Consensus 988 ~~~ 990 (1394)
T TIGR00956 988 LGE 990 (1394)
T ss_pred ccc
Confidence 743
No 317
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.6e-38 Score=338.52 Aligned_cols=214 Identities=31% Similarity=0.486 Sum_probs=182.7
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhc-c
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRS-Q 477 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~-~ 477 (644)
-++++|++.+|++ .++|+|+||++.+||++|++|++|+|||||+|.|.|.|+|++|+|.+||++..-.++.+=++ -
T Consensus 8 ll~~~~i~K~Fgg---V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~G 84 (500)
T COG1129 8 LLELRGISKSFGG---VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAG 84 (500)
T ss_pred eeeeecceEEcCC---ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCC
Confidence 4889999999974 47999999999999999999999999999999999999999999999999999888766655 4
Q ss_pred eEEEecCCCCCc-ccHHHHHhcCCCCCC---CCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHH
Q psy5743 478 IGSVSQEPTLFS-GTIYENILYGVNDSS---SVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIA 553 (644)
Q Consensus 478 i~~V~Q~~~Lf~-gTIreNI~~g~~~~~---~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLA 553 (644)
|+.|.||..|+. -||.|||.+|++... -.|..++.+.++..=- .. .++...+++|+ +||+||||-++||
T Consensus 85 I~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~-~l--g~~~~~~~~v~----~LsiaqrQ~VeIA 157 (500)
T COG1129 85 IATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLA-RL--GLDIDPDTLVG----DLSIAQRQMVEIA 157 (500)
T ss_pred cEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHH-Hc--CCCCChhhhhh----hCCHHHHHHHHHH
Confidence 999999999996 599999999987422 2455666554443311 00 01122667766 5999999999999
Q ss_pred HHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHH-hhcCEEEEEeCCeEEEecC
Q psy5743 554 RALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGS 622 (644)
Q Consensus 554 RAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt 622 (644)
||+..+++|+|||||||+|+....+.+.+.++++. ++.++|+||||++.+ +-||+|.||.||+.+..++
T Consensus 158 rAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~ 228 (500)
T COG1129 158 RALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRP 228 (500)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecc
Confidence 99999999999999999999998889999998876 689999999999987 6699999999999997776
No 318
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=5.5e-39 Score=358.01 Aligned_cols=217 Identities=22% Similarity=0.324 Sum_probs=173.9
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCC-CCcEEEECCccCCCCCh-HHHhc
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDP-QNGKILIDGVDIKELDP-MYLRS 476 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p-~~G~I~idg~~i~~~~~-~~lr~ 476 (644)
-|+++|++++|+++.+..+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+. ..+|+
T Consensus 257 ~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~ 336 (500)
T TIGR02633 257 ILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRA 336 (500)
T ss_pred eEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 48999999999532234699999999999999999999999999999999999996 89999999999875543 56688
Q ss_pred ceEEEecCC---CCCc-ccHHHHHhcCCCC-CC---CCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCCh
Q psy5743 477 QIGSVSQEP---TLFS-GTIYENILYGVND-SS---SVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSG 544 (644)
Q Consensus 477 ~i~~V~Q~~---~Lf~-gTIreNI~~g~~~-~~---~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSG 544 (644)
+++||+|++ .+|. .|++||+.++... .. ..+ ++++.++++..++.+. -.+. ....|||
T Consensus 337 ~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~----~~~~LSg 406 (500)
T TIGR02633 337 GIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTA------SPFL----PIGRLSG 406 (500)
T ss_pred CCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCC------CccC----ccccCCH
Confidence 899999996 3565 6999999886311 00 011 1233444444443110 1223 3457999
Q ss_pred hHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHh-hcCEEEEEeCCeEEEecC
Q psy5743 545 GQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGS 622 (644)
Q Consensus 545 GQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt 622 (644)
|||||++||||++.+|++|||||||++||..+.+.+.+.|.++. ++.|+|+|||+++.+. .||+|++|++|+++..++
T Consensus 407 Gqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~ 486 (500)
T TIGR02633 407 GNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFV 486 (500)
T ss_pred HHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEc
Confidence 99999999999999999999999999999999999999998864 4789999999999885 599999999999998776
Q ss_pred hhH
Q psy5743 623 YAH 625 (644)
Q Consensus 623 ~~e 625 (644)
-++
T Consensus 487 ~~~ 489 (500)
T TIGR02633 487 NHA 489 (500)
T ss_pred ccc
Confidence 544
No 319
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=1.5e-38 Score=357.89 Aligned_cols=212 Identities=27% Similarity=0.411 Sum_probs=172.3
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
-|+++|++++|++ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ +..|
T Consensus 4 ~i~~~nls~~~~~--~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~i 70 (552)
T TIGR03719 4 IYTMNRVSKVVPP--KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP-----------GIKV 70 (552)
T ss_pred EEEEeeEEEecCC--CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEE
Confidence 3899999999962 34799999999999999999999999999999999999999999999986 2479
Q ss_pred EEEecCCCCCc-ccHHHHHhcCCCC---------------CCCCC--------HHHHHHHHHHHhhccc-------hhhh
Q psy5743 479 GSVSQEPTLFS-GTIYENILYGVND---------------SSSVT--------KSDIIHAAKEANAYGF-------VIDF 527 (644)
Q Consensus 479 ~~V~Q~~~Lf~-gTIreNI~~g~~~---------------~~~~~--------~~~i~~a~~~a~l~~~-------i~~l 527 (644)
+||+|+|.+|. -|++|||.++... ..... .+++.++++.++.++. +..+
T Consensus 71 ~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 150 (552)
T TIGR03719 71 GYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDAL 150 (552)
T ss_pred EEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhC
Confidence 99999999986 5999999875210 00001 1245555555554321 1111
Q ss_pred hcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhh-c
Q psy5743 528 KNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRK-S 606 (644)
Q Consensus 528 p~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~-a 606 (644)
|++ .......+||||||||++||||++.+|++|||||||++||+++...+.+.|.+. ++|+|+|||+++.+.. |
T Consensus 151 --~l~-~~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~--~~tvIiisHd~~~~~~~~ 225 (552)
T TIGR03719 151 --RCP-PWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY--PGTVVAVTHDRYFLDNVA 225 (552)
T ss_pred --CCC-cccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhc
Confidence 332 124456789999999999999999999999999999999999999999999886 4699999999999865 8
Q ss_pred CEEEEEeCCeEE-EecChhHHhc
Q psy5743 607 NQICVLDKGKIV-EIGSYAHLIK 628 (644)
Q Consensus 607 D~Iivl~~G~iv-e~Gt~~eLl~ 628 (644)
|+|++|++|+++ ..|++++.++
T Consensus 226 d~v~~l~~g~i~~~~g~~~~~~~ 248 (552)
T TIGR03719 226 GWILELDRGRGIPWEGNYSSWLE 248 (552)
T ss_pred CeEEEEECCEEEEecCCHHHHHH
Confidence 999999999976 7799998654
No 320
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.8e-38 Score=357.38 Aligned_cols=212 Identities=27% Similarity=0.378 Sum_probs=167.5
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
-|+++|++++|++ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ..+
T Consensus 6 ~l~i~~l~~~y~~--~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~-----------~~i 72 (556)
T PRK11819 6 IYTMNRVSKVVPP--KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPG-----------IKV 72 (556)
T ss_pred EEEEeeEEEEeCC--CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEE
Confidence 4899999999962 357999999999999999999999999999999999999999999999752 479
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCCCC--------------CCCC---------HHHHHHHHHHHhh-------ccchhhh
Q psy5743 479 GSVSQEPTLFSG-TIYENILYGVNDS--------------SSVT---------KSDIIHAAKEANA-------YGFVIDF 527 (644)
Q Consensus 479 ~~V~Q~~~Lf~g-TIreNI~~g~~~~--------------~~~~---------~~~i~~a~~~a~l-------~~~i~~l 527 (644)
|||+|+|.+++. |++||+.++.... .... ..++.+.++.++. .+.+..+
T Consensus 73 ~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 152 (556)
T PRK11819 73 GYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDAL 152 (556)
T ss_pred EEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhC
Confidence 999999999875 9999998752100 0000 0111111211111 1111111
Q ss_pred hcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhh-c
Q psy5743 528 KNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRK-S 606 (644)
Q Consensus 528 p~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~-a 606 (644)
|++ ........||||||||++||||++.+|++||||||||+||+++...+.+.|++. +.|+|+|||+++.+.. |
T Consensus 153 --gl~-~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~--~~tviiisHd~~~~~~~~ 227 (556)
T PRK11819 153 --RCP-PWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY--PGTVVAVTHDRYFLDNVA 227 (556)
T ss_pred --CCC-cccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhc
Confidence 221 123344679999999999999999999999999999999999999999999887 4699999999999865 8
Q ss_pred CEEEEEeCCeEE-EecChhHHhc
Q psy5743 607 NQICVLDKGKIV-EIGSYAHLIK 628 (644)
Q Consensus 607 D~Iivl~~G~iv-e~Gt~~eLl~ 628 (644)
|+|++|++|+++ ..|++++..+
T Consensus 228 d~i~~l~~g~i~~~~g~~~~~~~ 250 (556)
T PRK11819 228 GWILELDRGRGIPWEGNYSSWLE 250 (556)
T ss_pred CeEEEEeCCEEEEecCCHHHHHH
Confidence 999999999986 7899998754
No 321
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=1.3e-38 Score=354.64 Aligned_cols=211 Identities=23% Similarity=0.351 Sum_probs=172.2
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCCh-HHHhcc
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDP-MYLRSQ 477 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~-~~lr~~ 477 (644)
-|+++|+++ ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...++ +.+|++
T Consensus 257 ~l~~~~l~~--------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~ 328 (501)
T PRK10762 257 RLKVDNLSG--------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANG 328 (501)
T ss_pred EEEEeCccc--------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCC
Confidence 489999974 26999999999999999999999999999999999999999999999999987765 346778
Q ss_pred eEEEecCC---CCC-cccHHHHHhcCCCCC--C---CCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCCh
Q psy5743 478 IGSVSQEP---TLF-SGTIYENILYGVNDS--S---SVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSG 544 (644)
Q Consensus 478 i~~V~Q~~---~Lf-~gTIreNI~~g~~~~--~---~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSG 544 (644)
++||+|++ .+| +.|++||+.++.... . ..+ ++++.++++..++. +-........|||
T Consensus 329 i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----------~~~~~~~~~~LSg 398 (501)
T PRK10762 329 IVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIK----------TPSMEQAIGLLSG 398 (501)
T ss_pred CEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCC----------CCCccCchhhCCH
Confidence 99999997 344 469999998752100 0 011 12233333333321 1123445567999
Q ss_pred hHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHh-hcCEEEEEeCCeEEEecC
Q psy5743 545 GQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGS 622 (644)
Q Consensus 545 GQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt 622 (644)
|||||++||||++.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+. .||+|++|++|+++..|+
T Consensus 399 Gekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~ 478 (501)
T PRK10762 399 GNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFT 478 (501)
T ss_pred HHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEec
Confidence 99999999999999999999999999999999999999998875 4789999999999874 599999999999999998
Q ss_pred hhHHh
Q psy5743 623 YAHLI 627 (644)
Q Consensus 623 ~~eLl 627 (644)
.+++.
T Consensus 479 ~~~~~ 483 (501)
T PRK10762 479 REQAT 483 (501)
T ss_pred cccCC
Confidence 87753
No 322
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-38 Score=355.00 Aligned_cols=212 Identities=20% Similarity=0.327 Sum_probs=171.9
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCCh-HHHhcc
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDP-MYLRSQ 477 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~-~~lr~~ 477 (644)
.++++|+++. .+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++...++ ...|+.
T Consensus 257 ~l~~~~~~~~-------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 329 (501)
T PRK11288 257 RLRLDGLKGP-------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAG 329 (501)
T ss_pred EEEEeccccC-------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCC
Confidence 4899999842 38999999999999999999999999999999999999999999999999875543 445678
Q ss_pred eEEEecCCC---CC-cccHHHHHhcCCCCCC---C--CC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCCh
Q psy5743 478 IGSVSQEPT---LF-SGTIYENILYGVNDSS---S--VT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSG 544 (644)
Q Consensus 478 i~~V~Q~~~---Lf-~gTIreNI~~g~~~~~---~--~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSG 544 (644)
++|++|++. +| +.|+.||+.++..... . .+ ++++.++++..++. +.........|||
T Consensus 330 i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----------~~~~~~~~~~LSg 399 (501)
T PRK11288 330 IMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIK----------TPSREQLIMNLSG 399 (501)
T ss_pred CEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcc----------cCCccCccccCCH
Confidence 999999972 55 4899999987632100 0 01 12233333333331 0112333458999
Q ss_pred hHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC-CceEEEEccCchHH-hhcCEEEEEeCCeEEEecC
Q psy5743 545 GQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE-GKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGS 622 (644)
Q Consensus 545 GQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~-~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt 622 (644)
|||||++||||++.+|++|||||||++||..+.+.+.+.|.++.+ +.|+|+|||+++.+ +.||+|++|++|++++.|+
T Consensus 400 Gq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~ 479 (501)
T PRK11288 400 GNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELA 479 (501)
T ss_pred HHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEc
Confidence 999999999999999999999999999999999999999988653 78999999999988 5699999999999999999
Q ss_pred hhHHh
Q psy5743 623 YAHLI 627 (644)
Q Consensus 623 ~~eLl 627 (644)
.+|..
T Consensus 480 ~~~~~ 484 (501)
T PRK11288 480 REQAT 484 (501)
T ss_pred cccCC
Confidence 88764
No 323
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=2.5e-38 Score=318.97 Aligned_cols=195 Identities=25% Similarity=0.379 Sum_probs=158.4
Q ss_pred EEcCCCCCCccccceeEEEe-----CCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEE
Q psy5743 407 FSYPSRPDAVILNDLSLKIQ-----SGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSV 481 (644)
Q Consensus 407 f~Y~~~~~~~vL~~isl~i~-----~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V 481 (644)
|+|++ ..+.++|++|+++ +||+++|+||||||||||+++|+|+++|++|+|.++|. .++|+
T Consensus 1 ~~y~~--~~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~------------~i~~~ 66 (246)
T cd03237 1 YTYPT--MKKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD------------TVSYK 66 (246)
T ss_pred CCCcc--cccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc------------eEEEe
Confidence 67875 3458999999997 68999999999999999999999999999999999984 69999
Q ss_pred ecCCC-CCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCC
Q psy5743 482 SQEPT-LFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKS 560 (644)
Q Consensus 482 ~Q~~~-Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p 560 (644)
+|++. .++.|++||+.+...... ...+...++++..+ ++.........||||||||++|||||+++|
T Consensus 67 ~q~~~~~~~~tv~e~l~~~~~~~~-~~~~~~~~~l~~l~-----------l~~~~~~~~~~LSgGe~qrv~iaraL~~~p 134 (246)
T cd03237 67 PQYIKADYEGTVRDLLSSITKDFY-THPYFKTEIAKPLQ-----------IEQILDREVPELSGGELQRVAIAACLSKDA 134 (246)
T ss_pred cccccCCCCCCHHHHHHHHhhhcc-ccHHHHHHHHHHcC-----------CHHHhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 99987 578999999986533200 11222334444443 333344555689999999999999999999
Q ss_pred CEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEEEeCCeEE--EecChhHHh
Q psy5743 561 KILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIR-KSNQICVLDKGKIV--EIGSYAHLI 627 (644)
Q Consensus 561 ~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~-~aD~Iivl~~G~iv--e~Gt~~eLl 627 (644)
+++||||||++||+++...+.+.|+++.+ ++|+|+|||+++.+. .||+|++|+++..+ ..++++++.
T Consensus 135 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~ 206 (246)
T cd03237 135 DIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPSVNGVANPPQSLR 206 (246)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCeeEEEeCCchHHH
Confidence 99999999999999999999999988753 789999999999987 59999999876444 556666653
No 324
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.7e-38 Score=354.60 Aligned_cols=211 Identities=23% Similarity=0.404 Sum_probs=166.1
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ..++
T Consensus 2 l~i~~ls~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~ 67 (530)
T PRK15064 2 LSTANITMQFGA---KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN-----------ERLG 67 (530)
T ss_pred EEEEEEEEEeCC---cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEEE
Confidence 789999999963 46999999999999999999999999999999999999999999999983 3699
Q ss_pred EEecCCCCCcc-cHHHHHhcCCCC-------------CCCCCHH---HHHHHH----------HHHhhccchhhhhcCcc
Q psy5743 480 SVSQEPTLFSG-TIYENILYGVND-------------SSSVTKS---DIIHAA----------KEANAYGFVIDFKNGFD 532 (644)
Q Consensus 480 ~V~Q~~~Lf~g-TIreNI~~g~~~-------------~~~~~~~---~i~~a~----------~~a~l~~~i~~lp~Gl~ 532 (644)
||+|++.+|.. |++||+.++... ......+ .+.+.. ....+.+.++.+ |++
T Consensus 68 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~ 145 (530)
T PRK15064 68 KLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGV--GIP 145 (530)
T ss_pred EEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhC--CCC
Confidence 99999988864 999999875210 0000000 000000 001111222222 333
Q ss_pred ccc-cCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh-hcCEEE
Q psy5743 533 TIV-GERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIR-KSNQIC 610 (644)
Q Consensus 533 T~i-ge~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~-~aD~Ii 610 (644)
... ......||||||||++|||||+.+|++|||||||++||+++...+.+.|.+. ++|+|+|||+++.+. .||+|+
T Consensus 146 ~~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsHd~~~~~~~~d~i~ 223 (530)
T PRK15064 146 EEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNER--NSTMIIISHDRHFLNSVCTHMA 223 (530)
T ss_pred hhHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhcceEE
Confidence 222 2345689999999999999999999999999999999999999999999763 799999999999885 599999
Q ss_pred EEeCCeE-EEecChhHHhc
Q psy5743 611 VLDKGKI-VEIGSYAHLIK 628 (644)
Q Consensus 611 vl~~G~i-ve~Gt~~eLl~ 628 (644)
+|++|++ ++.|++++.++
T Consensus 224 ~l~~g~i~~~~g~~~~~~~ 242 (530)
T PRK15064 224 DLDYGELRVYPGNYDEYMT 242 (530)
T ss_pred EEeCCEEEEecCCHHHHHH
Confidence 9999999 47899998764
No 325
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.8e-39 Score=309.73 Aligned_cols=196 Identities=27% Similarity=0.449 Sum_probs=177.2
Q ss_pred ceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCC----CCChHHHhcceEEEecCCCCCc-ccHHH
Q psy5743 420 DLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIK----ELDPMYLRSQIGSVSQEPTLFS-GTIYE 494 (644)
Q Consensus 420 ~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~----~~~~~~lr~~i~~V~Q~~~Lf~-gTIre 494 (644)
++||+.+....+||-|+||||||||+|++.|+..|++|.|.+||.-+. .+...--+++||||+||..||. -|+|-
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrg 95 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRG 95 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEec
Confidence 688999888999999999999999999999999999999999998774 4555667889999999999997 69999
Q ss_pred HHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCH
Q psy5743 495 NILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDA 574 (644)
Q Consensus 495 NI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~ 574 (644)
|++||... .+.++..+++...|+...+.++| ..||||||||+||+|||+.+|++|++|||.|+||.
T Consensus 96 NL~YG~~~---~~~~~fd~iv~lLGI~hLL~R~P-----------~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~ 161 (352)
T COG4148 96 NLRYGMWK---SMRAQFDQLVALLGIEHLLDRYP-----------GTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDL 161 (352)
T ss_pred chhhhhcc---cchHhHHHHHHHhCcHHHHhhCC-----------CccCcchhhHHHHHHHHhcCCCeeeecCchhhccc
Confidence 99999875 56788888888888877777776 58999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcC--CceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhHHhcC
Q psy5743 575 ENEYLVQSAIEKLIE--GKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHLIKN 629 (644)
Q Consensus 575 ~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~eLl~~ 629 (644)
...++++-.|+++.+ +.-++.|||.+..+ +-||+|++|++|++...|.-+|.+++
T Consensus 162 ~RK~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~ 219 (352)
T COG4148 162 PRKREILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGS 219 (352)
T ss_pred chhhHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhcC
Confidence 999999999988765 45799999999976 67999999999999999999999865
No 326
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=100.00 E-value=4.5e-38 Score=291.20 Aligned_cols=143 Identities=34% Similarity=0.576 Sum_probs=134.5
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
++++|++++|++ .++++++||++++||.++|+|+||||||||+++|+|+++|++|+|.+||. +.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~-----------~~i~ 66 (144)
T cd03221 1 IELENLSKTYGG---KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST-----------VKIG 66 (144)
T ss_pred CEEEEEEEEECC---ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe-----------EEEE
Confidence 478999999964 36999999999999999999999999999999999999999999999994 4799
Q ss_pred EEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccC
Q psy5743 480 SVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKK 559 (644)
Q Consensus 480 ~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~ 559 (644)
|++| |||||+||++||||++++
T Consensus 67 ~~~~----------------------------------------------------------lS~G~~~rv~laral~~~ 88 (144)
T cd03221 67 YFEQ----------------------------------------------------------LSGGEKMRLALAKLLLEN 88 (144)
T ss_pred EEcc----------------------------------------------------------CCHHHHHHHHHHHHHhcC
Confidence 9998 999999999999999999
Q ss_pred CCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhh-cCEEEEEeCCe
Q psy5743 560 SKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRK-SNQICVLDKGK 616 (644)
Q Consensus 560 p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~-aD~Iivl~~G~ 616 (644)
|++++|||||++||.++...+.+.|+++ ++|+|++||+++.+.. ||++++|++|+
T Consensus 89 p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 89 PNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 9999999999999999999999999887 5899999999999855 89999999985
No 327
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=3.5e-38 Score=311.69 Aligned_cols=188 Identities=20% Similarity=0.284 Sum_probs=155.9
Q ss_pred cccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEE-ECCccCCCCChHHHhcceEEEecCCCCCcc-cHHH
Q psy5743 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKIL-IDGVDIKELDPMYLRSQIGSVSQEPTLFSG-TIYE 494 (644)
Q Consensus 417 vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~-idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~g-TIre 494 (644)
+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|. ++|.++ .+.|++.+|.+ |++|
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~-------------~~~~~~~l~~~ltv~e 68 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDAL-------------PLGANSFILPGLTGEE 68 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCcee-------------ccccccccCCcCcHHH
Confidence 68999999999999999999999999999999999999999997 787532 24467888875 9999
Q ss_pred HHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCH
Q psy5743 495 NILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDA 574 (644)
Q Consensus 495 NI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~ 574 (644)
||.+.... ...+.++..+.+.. ...++..++++++ .||||||||++||||++++|+++||||||+++|+
T Consensus 69 nl~~~~~~-~~~~~~~~~~~~~~------~~~l~~~~~~~~~----~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~ 137 (213)
T PRK15177 69 NARMMASL-YGLDGDEFSHFCYQ------LTQLEQCYTDRVS----EYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDN 137 (213)
T ss_pred HHHHHHHH-cCCCHHHHHHHHHH------HhChhHHhhchHh----hcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCH
Confidence 99875321 11344444332211 2345555666664 4999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHHhc
Q psy5743 575 ENEYLVQSAIEKLIEGKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHLIK 628 (644)
Q Consensus 575 ~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eLl~ 628 (644)
.+.+.+.+.+.+..+++|+|++||+++.+. .||+|++|++|++++.|+-++..+
T Consensus 138 ~~~~~~~~~l~~~~~~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 192 (213)
T PRK15177 138 ATQLRMQAALACQLQQKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQATA 192 (213)
T ss_pred HHHHHHHHHHHHHhhCCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHHHH
Confidence 999999998876666789999999999985 699999999999999999888754
No 328
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.8e-38 Score=351.91 Aligned_cols=203 Identities=20% Similarity=0.350 Sum_probs=173.1
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
-|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. +.+
T Consensus 319 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-----------~~i 384 (530)
T PRK15064 319 ALEVENLTKGFDN---GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN-----------ANI 384 (530)
T ss_pred eEEEEeeEEeeCC---ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc-----------eEE
Confidence 5999999999963 46999999999999999999999999999999999999999999999983 479
Q ss_pred EEEecCCC--CCc-ccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHH
Q psy5743 479 GSVSQEPT--LFS-GTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARA 555 (644)
Q Consensus 479 ~~V~Q~~~--Lf~-gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARA 555 (644)
|||+|++. ++. .|++||+.+.... ..+++++.++++..++.+ .........||||||||++||||
T Consensus 385 ~~~~q~~~~~~~~~~t~~~~~~~~~~~--~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgGq~qrv~la~a 452 (530)
T PRK15064 385 GYYAQDHAYDFENDLTLFDWMSQWRQE--GDDEQAVRGTLGRLLFSQ----------DDIKKSVKVLSGGEKGRMLFGKL 452 (530)
T ss_pred EEEcccccccCCCCCcHHHHHHHhccC--CccHHHHHHHHHHcCCCh----------hHhcCcccccCHHHHHHHHHHHH
Confidence 99999974 443 6999999754211 134556677777766521 11234456899999999999999
Q ss_pred HccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhh-cCEEEEEeCCeEE-EecChhHHhcC
Q psy5743 556 LIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRK-SNQICVLDKGKIV-EIGSYAHLIKN 629 (644)
Q Consensus 556 ll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~-aD~Iivl~~G~iv-e~Gt~~eLl~~ 629 (644)
++++|++|||||||++||+.+...+.+.|.+. +.|+|+|||+++.+.. ||+|++|++|+++ +.|+++++++.
T Consensus 453 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~ 526 (530)
T PRK15064 453 MMQKPNVLVMDEPTNHMDMESIESLNMALEKY--EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRS 526 (530)
T ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHHH
Confidence 99999999999999999999999999999887 5699999999999865 9999999999998 88999998764
No 329
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=1.8e-38 Score=321.26 Aligned_cols=202 Identities=23% Similarity=0.313 Sum_probs=160.7
Q ss_pred EEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEE-----------ECCccCCCCCh
Q psy5743 403 NNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKIL-----------IDGVDIKELDP 471 (644)
Q Consensus 403 ~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~-----------idg~~i~~~~~ 471 (644)
.||+++|++ ..++|+|+|+ +++||+++|+||||||||||+++|+|+++|++|+|. ++|+++.++..
T Consensus 4 ~~~~~~y~~--~~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~ 80 (255)
T cd03236 4 DEPVHRYGP--NSFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFT 80 (255)
T ss_pred cCcceeecC--cchhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhH
Confidence 468899963 2368999994 999999999999999999999999999999999996 88999877644
Q ss_pred HHHhc--ceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHH
Q psy5743 472 MYLRS--QIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQR 549 (644)
Q Consensus 472 ~~lr~--~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQR 549 (644)
+..|. .+++++|++.++..++.+|+...-.. ...++++.++++..++ +.........||||||||
T Consensus 81 ~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~--~~~~~~~~~~l~~~gl-----------~~~~~~~~~~LS~G~~qr 147 (255)
T cd03236 81 KLLEGDVKVIVKPQYVDLIPKAVKGKVGELLKK--KDERGKLDELVDQLEL-----------RHVLDRNIDQLSGGELQR 147 (255)
T ss_pred HhhhcccceeeecchhccCchHHHHHHHHHhch--hHHHHHHHHHHHHcCC-----------chhhcCChhhCCHHHHHH
Confidence 43433 37888887777765555555433111 0123455555555544 334455667899999999
Q ss_pred HHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC-CceEEEEccCchHHh-hcCEEEEEeCCeEEEec
Q psy5743 550 IAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE-GKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIG 621 (644)
Q Consensus 550 iaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~-~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~G 621 (644)
++||||++++|++++||||||+||.++...+.+.|+++.+ ++|+|+|||+++.+. .||+|++|+ |++.+.|
T Consensus 148 v~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~-~~~~~~~ 220 (255)
T cd03236 148 VAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLY-GEPGAYG 220 (255)
T ss_pred HHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEC-CCCCcce
Confidence 9999999999999999999999999999999999988754 789999999999987 599999995 6666544
No 330
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.5e-38 Score=290.12 Aligned_cols=205 Identities=31% Similarity=0.458 Sum_probs=171.8
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
+.+++++.+|++. ..++|+|+|++|++||.++++||||||||||+|++.|+.+|..|+|.+||.+|..-.. .=|
T Consensus 4 l~~~~~sl~y~g~-~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPga-----erg 77 (259)
T COG4525 4 LNVSHLSLSYEGK-PRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGA-----ERG 77 (259)
T ss_pred eehhheEEecCCc-chhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCc-----cce
Confidence 5678899999874 3569999999999999999999999999999999999999999999999998876554 358
Q ss_pred EEecCCCCCc-ccHHHHHhcCCCCCCCCCHH----HHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHH
Q psy5743 480 SVSQEPTLFS-GTIYENILYGVNDSSSVTKS----DIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIAR 554 (644)
Q Consensus 480 ~V~Q~~~Lf~-gTIreNI~~g~~~~~~~~~~----~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLAR 554 (644)
+|+|++-|+. -|+.||+.||-.- .-++.+ ...+.+..+++.++=. ..-..||||||||+.|||
T Consensus 78 vVFQ~~~LlPWl~~~dNvafgL~l-~Gi~k~~R~~~a~q~l~~VgL~~~~~-----------~~i~qLSGGmrQRvGiAR 145 (259)
T COG4525 78 VVFQNEALLPWLNVIDNVAFGLQL-RGIEKAQRREIAHQMLALVGLEGAEH-----------KYIWQLSGGMRQRVGIAR 145 (259)
T ss_pred eEeccCccchhhHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhCcccccc-----------cceEeecchHHHHHHHHH
Confidence 9999999998 7999999998642 112322 2334455666655422 223579999999999999
Q ss_pred HHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc--CCceEEEEccCchH-HhhcCEEEEEe--CCeEEEecC
Q psy5743 555 ALIKKSKILLLDEATSALDAENEYLVQSAIEKLI--EGKTVLTIAHRLST-IRKSNQICVLD--KGKIVEIGS 622 (644)
Q Consensus 555 All~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~--~~~TvI~IaHrl~~-i~~aD~Iivl~--~G~ive~Gt 622 (644)
||.-+|+.|+||||.+|||+-+.+.+++.+-++. .++-+++|||.++. +--|++++||+ .|+|++.=+
T Consensus 146 ALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~ 218 (259)
T COG4525 146 ALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLP 218 (259)
T ss_pred HhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecC
Confidence 9999999999999999999999999999998865 48999999999986 56799999997 579997644
No 331
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=5.4e-38 Score=280.00 Aligned_cols=224 Identities=30% Similarity=0.447 Sum_probs=184.4
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccC--CCC----ChH
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDI--KEL----DPM 472 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i--~~~----~~~ 472 (644)
+|+++|++|.|+. ..+|.||+|+.+.||++.+.||||+|||||++.|.=+--|.+|+..|.|... ++. ...
T Consensus 2 sirv~~in~~yg~---~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~ 78 (242)
T COG4161 2 SIQLNGINCFYGA---HQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIR 78 (242)
T ss_pred ceEEccccccccc---chheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHH
Confidence 5899999999964 3689999999999999999999999999999999999999999999988543 322 236
Q ss_pred HHhcceEEEecCCCCCc-ccHHHHHhcCCCCC-CCCCH----HHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhH
Q psy5743 473 YLRSQIGSVSQEPTLFS-GTIYENILYGVNDS-SSVTK----SDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQ 546 (644)
Q Consensus 473 ~lr~~i~~V~Q~~~Lf~-gTIreNI~~g~~~~-~~~~~----~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQ 546 (644)
.+|+.+|+|+|.-.|.. -|+-||+.-. |-. ...++ .+-.+.++...+.++-+++| ..|||||
T Consensus 79 ~lr~~vgmvfqqy~lwphltv~enliea-p~kv~gl~~~qa~~~a~ellkrlrl~~~adr~p-----------lhlsggq 146 (242)
T COG4161 79 DLRRNVGMVFQQYNLWPHLTVQENLIEA-PCRVLGLSKDQALARAEKLLKRLRLKPYADRYP-----------LHLSGGQ 146 (242)
T ss_pred HHHHhhhhhhhhhccCchhHHHHHHHhh-hHHHhCCCHHHHHHHHHHHHHHhccccccccCc-----------eecccch
Confidence 78999999999999886 6999999633 210 01222 23445566667777766666 4699999
Q ss_pred HHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC-CceEEEEccCchHHh-hcCEEEEEeCCeEEEecChh
Q psy5743 547 KQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE-GKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYA 624 (644)
Q Consensus 547 kQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~-~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~ 624 (644)
.||+||||||..+|++|++||||+|||++-...|.+.|+++.. +.|-++|||..+..+ -|.+++.|++|+|+|.|+++
T Consensus 147 qqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~g~a~ 226 (242)
T COG4161 147 QQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDAS 226 (242)
T ss_pred hhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEeecchh
Confidence 9999999999999999999999999999988899999998764 889999999999885 58999999999999999998
Q ss_pred HHhcCCCcHHHHH
Q psy5743 625 HLIKNPNSMFNKL 637 (644)
Q Consensus 625 eLl~~~~~~y~~l 637 (644)
-.-......|.+.
T Consensus 227 ~ft~p~te~f~~y 239 (242)
T COG4161 227 CFTEPQTEAFKNY 239 (242)
T ss_pred hccCccHHHHHHH
Confidence 7754433344443
No 332
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=9e-38 Score=348.31 Aligned_cols=211 Identities=20% Similarity=0.312 Sum_probs=171.3
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHH-Hhcc
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMY-LRSQ 477 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~-lr~~ 477 (644)
-|+++|++. .+|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.++...++.. +|+.
T Consensus 268 ~l~~~~l~~--------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 339 (510)
T PRK15439 268 VLTVEDLTG--------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARG 339 (510)
T ss_pred eEEEeCCCC--------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 489999983 1599999999999999999999999999999999999999999999999998877654 4568
Q ss_pred eEEEecCC---CCCc-ccHHHHHhcCC----CCCCCC--CHHHHHHHHHHHhhccchhhhhcCcc-ccccCCCCCCChhH
Q psy5743 478 IGSVSQEP---TLFS-GTIYENILYGV----NDSSSV--TKSDIIHAAKEANAYGFVIDFKNGFD-TIVGERGIMLSGGQ 546 (644)
Q Consensus 478 i~~V~Q~~---~Lf~-gTIreNI~~g~----~~~~~~--~~~~i~~a~~~a~l~~~i~~lp~Gl~-T~ige~G~~LSGGQ 546 (644)
++||||++ .+|. -|+.+|+.... +..... .++++.++++..+ +. .........|||||
T Consensus 340 i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~~LSgG~ 408 (510)
T PRK15439 340 LVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALN-----------IKFNHAEQAARTLSGGN 408 (510)
T ss_pred cEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcC-----------CCCCCccCccccCCcHH
Confidence 99999986 3665 49999996421 000000 1122333333333 32 22344456799999
Q ss_pred HHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHh-hcCEEEEEeCCeEEEecChh
Q psy5743 547 KQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYA 624 (644)
Q Consensus 547 kQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~ 624 (644)
|||++||||++.+|+||||||||++||+.+.+.+.+.|.++. +++|+|+|||+++.+. .||+|++|++|+++..|+.+
T Consensus 409 kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~ 488 (510)
T PRK15439 409 QQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGA 488 (510)
T ss_pred HHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccc
Confidence 999999999999999999999999999999999999998874 4789999999999985 59999999999999999988
Q ss_pred HHhc
Q psy5743 625 HLIK 628 (644)
Q Consensus 625 eLl~ 628 (644)
++..
T Consensus 489 ~~~~ 492 (510)
T PRK15439 489 AINV 492 (510)
T ss_pred cCCH
Confidence 7653
No 333
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=2.4e-37 Score=343.96 Aligned_cols=209 Identities=26% Similarity=0.296 Sum_probs=166.4
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCC-CCcEEEECCccCCC-CChHHHhc
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDP-QNGKILIDGVDIKE-LDPMYLRS 476 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p-~~G~I~idg~~i~~-~~~~~lr~ 476 (644)
-|+++|++++|++ +.+|+|+||++++||+++|+||||||||||+++|+|+.+| ++|+|.++|.++.. .+...+|+
T Consensus 260 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 336 (490)
T PRK10938 260 RIVLNNGVVSYND---RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKK 336 (490)
T ss_pred eEEEeceEEEECC---eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHh
Confidence 4999999999963 4689999999999999999999999999999999998876 69999999987642 23345678
Q ss_pred ceEEEecCCCCCc---ccHHHHHhcCCCC----CCCCC---HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhH
Q psy5743 477 QIGSVSQEPTLFS---GTIYENILYGVND----SSSVT---KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQ 546 (644)
Q Consensus 477 ~i~~V~Q~~~Lf~---gTIreNI~~g~~~----~~~~~---~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQ 546 (644)
+++||+|++.++. .|+++++.++..+ ..... ++++.++++..++.+. ........|||||
T Consensus 337 ~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGq 406 (490)
T PRK10938 337 HIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKR----------TADAPFHSLSWGQ 406 (490)
T ss_pred hceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchh----------hccCchhhCCHHH
Confidence 9999999987643 4677777543110 00011 2344455555544320 2233446799999
Q ss_pred HHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC-C-ceEEEEccCchHHhh--cCEEEEEeCCeEEEe
Q psy5743 547 KQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE-G-KTVLTIAHRLSTIRK--SNQICVLDKGKIVEI 620 (644)
Q Consensus 547 kQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~-~-~TvI~IaHrl~~i~~--aD~Iivl~~G~ive~ 620 (644)
|||++||||++.+|++|||||||++||+++...+.+.|.++.+ + .|+|+|||+++.+.. ||+|++|++|+|++.
T Consensus 407 ~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~ 484 (490)
T PRK10938 407 QRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRY 484 (490)
T ss_pred HHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEe
Confidence 9999999999999999999999999999999999999988754 3 369999999999964 899999999999864
No 334
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.4e-37 Score=339.55 Aligned_cols=215 Identities=20% Similarity=0.312 Sum_probs=167.8
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChH-HHhcc
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPM-YLRSQ 477 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~-~lr~~ 477 (644)
-|+++|++++| +++|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|.++...+.. ..|+.
T Consensus 250 ~i~~~~l~~~~-----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 324 (491)
T PRK10982 250 ILEVRNLTSLR-----QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHG 324 (491)
T ss_pred EEEEeCccccc-----CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCC
Confidence 48999999974 2489999999999999999999999999999999999999999999999999877654 34677
Q ss_pred eEEEecCCC---CCc-ccHHHHHhcC-----CCCCCCCCHHHHHHHHHHHhhccchhhhhcCccc-cccCCCCCCChhHH
Q psy5743 478 IGSVSQEPT---LFS-GTIYENILYG-----VNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDT-IVGERGIMLSGGQK 547 (644)
Q Consensus 478 i~~V~Q~~~---Lf~-gTIreNI~~g-----~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T-~ige~G~~LSGGQk 547 (644)
++|++|++. +|. .|+.+|+.+. .+.....+..+..+. ..++++.+ |+.. ........||||||
T Consensus 325 i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~~LSgGq~ 397 (491)
T PRK10982 325 FALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSD-----TQWVIDSM--RVKTPGHRTQIGSLSGGNQ 397 (491)
T ss_pred CEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHH-----HHHHHHhc--CccCCCcccccccCCcHHH
Confidence 999999963 555 5777663322 110000111221111 11222222 1210 12444568999999
Q ss_pred HHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhH
Q psy5743 548 QRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAH 625 (644)
Q Consensus 548 QRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~e 625 (644)
||++||||+.++|+||||||||++||+.+...+.+.|.++. .++|+|+|||+++.+ ..||++++|++|+++..++.++
T Consensus 398 qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~~~~ 477 (491)
T PRK10982 398 QKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDTKT 477 (491)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEEEcccc
Confidence 99999999999999999999999999999999999998764 478999999999988 4699999999999998887643
No 335
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.9e-37 Score=285.83 Aligned_cols=224 Identities=30% Similarity=0.452 Sum_probs=194.0
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
|+++||+.+|. .+.+++++|++||+|+.++|+||+|+|||||+..+.|+.++++|+|.+||.++...+.+++.+.++
T Consensus 2 I~i~nv~K~y~---~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lS 78 (252)
T COG4604 2 ITIENVSKSYG---TKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLS 78 (252)
T ss_pred eeehhhhHhhC---CEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHH
Confidence 68999999996 357999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCc-ccHHHHHhcCCCCCC-----CCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHH
Q psy5743 480 SVSQEPTLFS-GTIYENILYGVNDSS-----SVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIA 553 (644)
Q Consensus 480 ~V~Q~~~Lf~-gTIreNI~~g~~~~~-----~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLA 553 (644)
..-|+..+-. -||||=+.||+=+++ .-|..-+.+|++-.++.+.-. -| =..||||||||--+|
T Consensus 79 ILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~d----ry-------Ld~LSGGQrQRAfIA 147 (252)
T COG4604 79 ILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSD----RY-------LDELSGGQRQRAFIA 147 (252)
T ss_pred HHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHH----Hh-------HHhcccchhhhhhhh
Confidence 9999988765 699999999983221 123444667777777644322 22 236999999999999
Q ss_pred HHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHHhcCC
Q psy5743 554 RALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHLIKNP 630 (644)
Q Consensus 554 RAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eLl~~~ 630 (644)
-.+.+|.+.++||||..+||......+++.++++.+ +||+++|-|+..... .+|+|+-|++|+++.+|+++|+++.
T Consensus 148 MVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~~- 226 (252)
T COG4604 148 MVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQP- 226 (252)
T ss_pred eeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcCH-
Confidence 999999999999999999999999999999887654 899999999999985 5899999999999999999999964
Q ss_pred CcHHHHHHH
Q psy5743 631 NSMFNKLMK 639 (644)
Q Consensus 631 ~~~y~~l~~ 639 (644)
....+++.
T Consensus 227 -~~L~eiyd 234 (252)
T COG4604 227 -EILSEIYD 234 (252)
T ss_pred -HHHHHHhc
Confidence 45556553
No 336
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=6.3e-37 Score=319.42 Aligned_cols=212 Identities=31% Similarity=0.533 Sum_probs=175.7
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChH-HHhcc
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPM-YLRSQ 477 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~-~lr~~ 477 (644)
.++++|++..||+ ..+++||||+|++||+.|+.|++|+|||||++.|.|+|+|++|+|++||++++--+|. ..|.-
T Consensus 4 ~l~~~~itK~f~~---~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~G 80 (501)
T COG3845 4 ALEMRGITKRFPG---VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLG 80 (501)
T ss_pred eEEEeccEEEcCC---EEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcC
Confidence 5899999999983 5689999999999999999999999999999999999999999999999999977765 55666
Q ss_pred eEEEecCCCCCcc-cHHHHHhcCCCCC--CCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHH
Q psy5743 478 IGSVSQEPTLFSG-TIYENILYGVNDS--SSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIAR 554 (644)
Q Consensus 478 i~~V~Q~~~Lf~g-TIreNI~~g~~~~--~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLAR 554 (644)
||+|.|.+.|++. |+.|||.+|.+.. ...+..+..+-++..+ ++ .|++-..-+.-..||-||+||+-|-+
T Consensus 81 IGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~-----~~--yGl~vdp~~~V~dLsVG~qQRVEIlK 153 (501)
T COG3845 81 IGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELS-----ER--YGLPVDPDAKVADLSVGEQQRVEILK 153 (501)
T ss_pred CcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHH-----HH--hCCCCCccceeecCCcchhHHHHHHH
Confidence 9999999999975 9999999998641 1123333322222211 11 13333333444569999999999999
Q ss_pred HHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhh-cCEEEEEeCCeEEEe
Q psy5743 555 ALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEI 620 (644)
Q Consensus 555 All~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~~-aD~Iivl~~G~ive~ 620 (644)
|||++|++||||||||-|-+..-..+.+.++++. .++|+|+|||+|..++. ||++-||.+|+++..
T Consensus 154 aLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt 221 (501)
T COG3845 154 ALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGT 221 (501)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEee
Confidence 9999999999999999999998888889998875 58999999999999865 999999999998643
No 337
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.3e-36 Score=284.61 Aligned_cols=154 Identities=41% Similarity=0.670 Sum_probs=145.1
Q ss_pred EEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEE
Q psy5743 402 FNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSV 481 (644)
Q Consensus 402 ~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V 481 (644)
++|++|+|++ .++++++||++++|++++|+|+||||||||+++|.|+++|++|+|.++|.++...+...+++.++|+
T Consensus 2 ~~~~~~~~~~---~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~ 78 (157)
T cd00267 2 IENLSFRYGG---RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYV 78 (157)
T ss_pred eEEEEEEeCC---eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEE
Confidence 6899999974 3699999999999999999999999999999999999999999999999999988888889999999
Q ss_pred ecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCC
Q psy5743 482 SQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSK 561 (644)
Q Consensus 482 ~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~ 561 (644)
+| |||||+||++||||+..+|+
T Consensus 79 ~q----------------------------------------------------------lS~G~~~r~~l~~~l~~~~~ 100 (157)
T cd00267 79 PQ----------------------------------------------------------LSGGQRQRVALARALLLNPD 100 (157)
T ss_pred ee----------------------------------------------------------CCHHHHHHHHHHHHHhcCCC
Confidence 99 99999999999999999999
Q ss_pred EEEeecccCCCCHHHHHHHHHHHHHHcC-CceEEEEccCchHHhh-cCEEEEEeCCe
Q psy5743 562 ILLLDEATSALDAENEYLVQSAIEKLIE-GKTVLTIAHRLSTIRK-SNQICVLDKGK 616 (644)
Q Consensus 562 IliLDEaTSaLD~~~e~~i~~~l~~~~~-~~TvI~IaHrl~~i~~-aD~Iivl~~G~ 616 (644)
+++|||||++||.++...+.+.|.+..+ ++|++++||+++.+.. ||+|++|++|+
T Consensus 101 i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 101 LLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 9999999999999999999999988654 4899999999999988 59999999875
No 338
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=2.6e-36 Score=344.64 Aligned_cols=199 Identities=25% Similarity=0.383 Sum_probs=165.6
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
-|+++||+|+|++ .+++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ +..|
T Consensus 508 ~L~~~~ls~~y~~--~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-----------~~~i 574 (718)
T PLN03073 508 IISFSDASFGYPG--GPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-----------KVRM 574 (718)
T ss_pred eEEEEeeEEEeCC--CCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-----------ceeE
Confidence 5999999999964 34689999999999999999999999999999999999999999999876 2479
Q ss_pred EEEecCCCCCcccHHHHHhcC----CCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHH
Q psy5743 479 GSVSQEPTLFSGTIYENILYG----VNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIAR 554 (644)
Q Consensus 479 ~~V~Q~~~Lf~gTIreNI~~g----~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLAR 554 (644)
||++|++. ...++.+|..+. .+. .+++++.++++..++.+.. .......||||||||++|||
T Consensus 575 gyv~Q~~~-~~l~~~~~~~~~~~~~~~~---~~~~~i~~~L~~~gl~~~~----------~~~~~~~LSgGqkqRvaLAr 640 (718)
T PLN03073 575 AVFSQHHV-DGLDLSSNPLLYMMRCFPG---VPEQKLRAHLGSFGVTGNL----------ALQPMYTLSGGQKSRVAFAK 640 (718)
T ss_pred EEEecccc-ccCCcchhHHHHHHHhcCC---CCHHHHHHHHHHCCCChHH----------hcCCccccCHHHHHHHHHHH
Confidence 99999873 233555664321 122 4577787788777764321 12335689999999999999
Q ss_pred HHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhh-cCEEEEEeCCeEE-EecChhHH
Q psy5743 555 ALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRK-SNQICVLDKGKIV-EIGSYAHL 626 (644)
Q Consensus 555 All~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~-aD~Iivl~~G~iv-e~Gt~~eL 626 (644)
|++.+|++|||||||++||..+...+.+.|.+. +.|+|+|||++..+.. ||+|++|++|+++ ..|++++.
T Consensus 641 aL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~ 712 (718)
T PLN03073 641 ITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF--QGGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDY 712 (718)
T ss_pred HHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 999999999999999999999999999998775 3599999999999864 9999999999998 67887764
No 339
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=3.4e-36 Score=365.25 Aligned_cols=216 Identities=25% Similarity=0.376 Sum_probs=179.7
Q ss_pred cEEEEEEEEEcCCC----------CCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCC--CCcEEEECCccC
Q psy5743 399 EIDFNNIRFSYPSR----------PDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDP--QNGKILIDGVDI 466 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~----------~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p--~~G~I~idg~~i 466 (644)
.++++||+|..+.. ....+|+|||++++||+++||+||||||||||+++|+|..++ .+|+|.+||.+.
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 58999999998531 124699999999999999999999999999999999999874 789999999886
Q ss_pred CCCChHHHhcceEEEecCCCCCc-ccHHHHHhcCCCCC--CCCCHHH----HHHHHHHHhhccchhhhhcCccccccCCC
Q psy5743 467 KELDPMYLRSQIGSVSQEPTLFS-GTIYENILYGVNDS--SSVTKSD----IIHAAKEANAYGFVIDFKNGFDTIVGERG 539 (644)
Q Consensus 467 ~~~~~~~lr~~i~~V~Q~~~Lf~-gTIreNI~~g~~~~--~~~~~~~----i~~a~~~a~l~~~i~~lp~Gl~T~ige~G 539 (644)
+ ...+|+.+|||+|++.++. .|++|||.|+..-. ...++++ +.++++..++. +-.|+.+|..+
T Consensus 947 ~---~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~-------~~~~~~vg~~~ 1016 (1470)
T PLN03140 947 K---QETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELD-------NLKDAIVGLPG 1016 (1470)
T ss_pred C---hHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCCh-------hHhCCccCCCC
Confidence 4 3467788999999988776 59999998853100 1123332 45566665543 23578888655
Q ss_pred -CCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchH--HhhcCEEEEEeC-
Q psy5743 540 -IMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLST--IRKSNQICVLDK- 614 (644)
Q Consensus 540 -~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~--i~~aD~Iivl~~- 614 (644)
..||||||||++|||||+.+|+||+||||||+||+.+...+.+.|+++. +++|+|+++|+++. ...+|++++|++
T Consensus 1017 ~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~g 1096 (1470)
T PLN03140 1017 VTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRG 1096 (1470)
T ss_pred CCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCC
Confidence 6899999999999999999999999999999999999999999998875 47999999999984 578999999996
Q ss_pred CeEEEecChh
Q psy5743 615 GKIVEIGSYA 624 (644)
Q Consensus 615 G~ive~Gt~~ 624 (644)
|+++..|+..
T Consensus 1097 G~~v~~G~~~ 1106 (1470)
T PLN03140 1097 GQVIYSGPLG 1106 (1470)
T ss_pred CEEEEECCcc
Confidence 8999999864
No 340
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=5.5e-36 Score=337.15 Aligned_cols=205 Identities=24% Similarity=0.361 Sum_probs=166.0
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
-|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ + ..+
T Consensus 324 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~----------~~i 389 (556)
T PRK11819 324 VIEAENLSKSFGD---RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-T----------VKL 389 (556)
T ss_pred EEEEEeEEEEECC---eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-c----------eEE
Confidence 4999999999963 4699999999999999999999999999999999999999999999965 2 169
Q ss_pred EEEecCC-CCCc-ccHHHHHhcCCCCCC-CCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHH
Q psy5743 479 GSVSQEP-TLFS-GTIYENILYGVNDSS-SVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARA 555 (644)
Q Consensus 479 ~~V~Q~~-~Lf~-gTIreNI~~g~~~~~-~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARA 555 (644)
|||+|++ .++. -|++||+.++..... ...+++..++++..++.+ .........||||||||++||||
T Consensus 390 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgG~~qrv~la~a 459 (556)
T PRK11819 390 AYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKG----------GDQQKKVGVLSGGERNRLHLAKT 459 (556)
T ss_pred EEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCCh----------hHhcCchhhCCHHHHHHHHHHHH
Confidence 9999997 5654 599999988642100 011233333444433311 01233445799999999999999
Q ss_pred HccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh-hcCEEEEEeC-CeEE-EecChhHHhcC
Q psy5743 556 LIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIR-KSNQICVLDK-GKIV-EIGSYAHLIKN 629 (644)
Q Consensus 556 ll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~-~aD~Iivl~~-G~iv-e~Gt~~eLl~~ 629 (644)
++.+|++|||||||++||+.+...+.+.|.+. ..|+|+|||+++.+. .||+|++|++ |++. ..|+++++++.
T Consensus 460 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~~ 534 (556)
T PRK11819 460 LKQGGNVLLLDEPTNDLDVETLRALEEALLEF--PGCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEED 534 (556)
T ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC--CCeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHHH
Confidence 99999999999999999999999999999887 359999999999875 4999999996 7887 47899887653
No 341
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=2.3e-36 Score=287.81 Aligned_cols=145 Identities=30% Similarity=0.403 Sum_probs=131.4
Q ss_pred EEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEe
Q psy5743 403 NNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVS 482 (644)
Q Consensus 403 ~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~ 482 (644)
.|++++|++ .+++++ +|++++||+++|+||||||||||+++|+|+++|++|+|.++|. .++|++
T Consensus 4 ~~l~~~~~~---~~~l~~-~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~------------~i~~~~ 67 (177)
T cd03222 4 PDCVKRYGV---FFLLVE-LGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGI------------TPVYKP 67 (177)
T ss_pred CCeEEEECC---EEEEcc-CcEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCE------------EEEEEc
Confidence 578999953 468888 4999999999999999999999999999999999999999995 378888
Q ss_pred cCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCE
Q psy5743 483 QEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKI 562 (644)
Q Consensus 483 Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~I 562 (644)
|++. ||||||||++||||++.+|++
T Consensus 68 q~~~-------------------------------------------------------LSgGq~qrv~laral~~~p~l 92 (177)
T cd03222 68 QYID-------------------------------------------------------LSGGELQRVAIAAALLRNATF 92 (177)
T ss_pred ccCC-------------------------------------------------------CCHHHHHHHHHHHHHhcCCCE
Confidence 8542 999999999999999999999
Q ss_pred EEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEEEeCCeEE
Q psy5743 563 LLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIR-KSNQICVLDKGKIV 618 (644)
Q Consensus 563 liLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~-~aD~Iivl~~G~iv 618 (644)
++|||||++||.++.+.+.+.+.+..+ ++|+|+|||+++.+. .||+|++|+++-.+
T Consensus 93 llLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~ 151 (177)
T cd03222 93 YLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGV 151 (177)
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCcc
Confidence 999999999999999999999988753 389999999999987 59999999988665
No 342
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.2e-36 Score=340.52 Aligned_cols=200 Identities=22% Similarity=0.337 Sum_probs=166.5
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
-|+++||+++|++ +++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.+++. ..+
T Consensus 312 ~l~~~~l~~~y~~---~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~i 377 (638)
T PRK10636 312 LLKMEKVSAGYGD---RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----------IKL 377 (638)
T ss_pred eEEEEeeEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----------EEE
Confidence 4999999999963 46999999999999999999999999999999999999999999999751 279
Q ss_pred EEEecCC--CCCc-ccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHH
Q psy5743 479 GSVSQEP--TLFS-GTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARA 555 (644)
Q Consensus 479 ~~V~Q~~--~Lf~-gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARA 555 (644)
||++|++ .+.. .|+.+|+....+. ..++++.+.++..++.+. .+......||||||||++||||
T Consensus 378 gy~~Q~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~L~~~~l~~~----------~~~~~~~~LSgGekqRl~La~~ 444 (638)
T PRK10636 378 GYFAQHQLEFLRADESPLQHLARLAPQ---ELEQKLRDYLGGFGFQGD----------KVTEETRRFSGGEKARLVLALI 444 (638)
T ss_pred EEecCcchhhCCccchHHHHHHHhCch---hhHHHHHHHHHHcCCChh----------HhcCchhhCCHHHHHHHHHHHH
Confidence 9999985 3443 4888887532221 334556666666554311 1222345799999999999999
Q ss_pred HccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh-hcCEEEEEeCCeEE-EecChhHHh
Q psy5743 556 LIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIR-KSNQICVLDKGKIV-EIGSYAHLI 627 (644)
Q Consensus 556 ll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~-~aD~Iivl~~G~iv-e~Gt~~eLl 627 (644)
++++|++|||||||++||..+...+.+.|.+. +.|+|+|||++..+. .||+|++|++|+++ ..|++++..
T Consensus 445 l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 516 (638)
T PRK10636 445 VWQRPNLLLLDEPTNHLDLDMRQALTEALIDF--EGALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQ 516 (638)
T ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHH
Confidence 99999999999999999999999999999887 459999999999985 59999999999997 789998874
No 343
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=9e-36 Score=339.95 Aligned_cols=203 Identities=26% Similarity=0.436 Sum_probs=164.8
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
-|+++||+++|++ .++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.+ |.++ .|
T Consensus 319 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~----------~i 384 (635)
T PRK11147 319 VFEMENVNYQIDG---KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL----------EV 384 (635)
T ss_pred eEEEeeeEEEECC---eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc----------EE
Confidence 4899999999963 46999999999999999999999999999999999999999999999 4332 69
Q ss_pred EEEecCC-CCCc-ccHHHHHhcCCCCCCCCC--HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHH
Q psy5743 479 GSVSQEP-TLFS-GTIYENILYGVNDSSSVT--KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIAR 554 (644)
Q Consensus 479 ~~V~Q~~-~Lf~-gTIreNI~~g~~~~~~~~--~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLAR 554 (644)
||++|++ .++. .|+.||+.++.+.. ..+ ..++.+.++..++.+ ...++++ ..||||||||++|||
T Consensus 385 ~y~~q~~~~l~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~l~~~~l~~------~~~~~~~----~~LSgGekqRl~la~ 453 (635)
T PRK11147 385 AYFDQHRAELDPEKTVMDNLAEGKQEV-MVNGRPRHVLGYLQDFLFHP------KRAMTPV----KALSGGERNRLLLAR 453 (635)
T ss_pred EEEeCcccccCCCCCHHHHHHhhcccc-cccchHHHHHHHHHhcCCCH------HHHhChh----hhCCHHHHHHHHHHH
Confidence 9999986 3555 49999998864320 011 233333444333311 1123333 569999999999999
Q ss_pred HHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh-hcCEEEEEe-CCeEEE-ecChhHHhc
Q psy5743 555 ALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIR-KSNQICVLD-KGKIVE-IGSYAHLIK 628 (644)
Q Consensus 555 All~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~-~aD~Iivl~-~G~ive-~Gt~~eLl~ 628 (644)
|++.+|++|||||||++||..+...+.+.|.+. +.|+|+|||+++.+. .||+|++|+ +|++++ .|+|++-++
T Consensus 454 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y~~ 528 (635)
T PRK11147 454 LFLKPSNLLILDEPTNDLDVETLELLEELLDSY--QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDARQ 528 (635)
T ss_pred HHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC--CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHHHH
Confidence 999999999999999999999999999999886 569999999999885 599999998 899975 578887643
No 344
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=1e-35 Score=334.85 Aligned_cols=203 Identities=25% Similarity=0.368 Sum_probs=164.8
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
-|+++|++++|++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ + ..|
T Consensus 322 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~----------~~i 387 (552)
T TIGR03719 322 VIEAENLSKGFGD---KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-T----------VKL 387 (552)
T ss_pred EEEEeeEEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-c----------eEE
Confidence 4999999999963 4699999999999999999999999999999999999999999999965 2 169
Q ss_pred EEEecCCC-CCc-ccHHHHHhcCCCCCC-CCCHHHHHHHHHHHhhccchhhhhcCccc-cccCCCCCCChhHHHHHHHHH
Q psy5743 479 GSVSQEPT-LFS-GTIYENILYGVNDSS-SVTKSDIIHAAKEANAYGFVIDFKNGFDT-IVGERGIMLSGGQKQRIAIAR 554 (644)
Q Consensus 479 ~~V~Q~~~-Lf~-gTIreNI~~g~~~~~-~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T-~ige~G~~LSGGQkQRiaLAR 554 (644)
+||+|++. ++. -|++||+.++.+... ...+.+..++++..++ .. ........||||||||++|||
T Consensus 388 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~~LSgGe~qrv~la~ 456 (552)
T TIGR03719 388 AYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNF-----------KGSDQQKKVGQLSGGERNRVHLAK 456 (552)
T ss_pred EEEeCCccccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCC-----------ChhHhcCchhhCCHHHHHHHHHHH
Confidence 99999973 554 599999998743100 0112223333333333 21 123345679999999999999
Q ss_pred HHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhh-cCEEEEEeC-CeEE-EecChhHHhc
Q psy5743 555 ALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRK-SNQICVLDK-GKIV-EIGSYAHLIK 628 (644)
Q Consensus 555 All~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~-aD~Iivl~~-G~iv-e~Gt~~eLl~ 628 (644)
|++.+|++|||||||++||..+...+.+.|.++ +.|+|+|||+++.+.. ||+|++|++ |+++ ..|++++..+
T Consensus 457 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~~ 531 (552)
T TIGR03719 457 TLKSGGNVLLLDEPTNDLDVETLRALEEALLEF--AGCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYEE 531 (552)
T ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHHH
Confidence 999999999999999999999999999999987 3599999999998864 999999997 5876 5688887654
No 345
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=7.5e-36 Score=284.00 Aligned_cols=156 Identities=27% Similarity=0.359 Sum_probs=129.8
Q ss_pred CCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHH
Q psy5743 414 DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIY 493 (644)
Q Consensus 414 ~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIr 493 (644)
..++|+|+||++++|++++|+||||||||||+++++ +++|+|.++|.. ... .++.++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~-~~~----~~~~~~~~~q---------- 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFL-PKF----SRNKLIFIDQ---------- 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCcc-ccc----ccccEEEEhH----------
Confidence 467899999999999999999999999999999996 368999998852 222 2345888887
Q ss_pred HHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccC--CCEEEeecccCC
Q psy5743 494 ENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKK--SKILLLDEATSA 571 (644)
Q Consensus 494 eNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~--p~IliLDEaTSa 571 (644)
.++++..++.+ . ...+....||||||||++||||++++ |+++||||||++
T Consensus 68 ------------------~~~l~~~~L~~---------~-~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~ 119 (176)
T cd03238 68 ------------------LQFLIDVGLGY---------L-TLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTG 119 (176)
T ss_pred ------------------HHHHHHcCCCc---------c-ccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCccc
Confidence 12333333221 1 24567789999999999999999999 999999999999
Q ss_pred CCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhhcCEEEEEeCCe
Q psy5743 572 LDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIRKSNQICVLDKGK 616 (644)
Q Consensus 572 LD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~~aD~Iivl~~G~ 616 (644)
||+++.+.+.+.|++.. .++|+|+|||+++.+..||+|++|++|+
T Consensus 120 LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~~d~i~~l~~g~ 165 (176)
T cd03238 120 LHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSSADWIIDFGPGS 165 (176)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEECCCC
Confidence 99999999999998865 4899999999999999999999996643
No 346
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=2.6e-35 Score=297.95 Aligned_cols=232 Identities=27% Similarity=0.411 Sum_probs=193.4
Q ss_pred cEEEEEEEEEcCC-CCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCC-----CCcEEEECCccCCCCChH
Q psy5743 399 EIDFNNIRFSYPS-RPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDP-----QNGKILIDGVDIKELDPM 472 (644)
Q Consensus 399 ~I~~~~vsf~Y~~-~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p-----~~G~I~idg~~i~~~~~~ 472 (644)
-++++|++..|.. +....++++|||+|++||++|+||+||||||--...++|+++. .+|+|.++|.|+-..+..
T Consensus 6 lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~ 85 (534)
T COG4172 6 LLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASER 85 (534)
T ss_pred ceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHH
Confidence 3788998877752 2356789999999999999999999999999999999999965 489999999999999999
Q ss_pred HHhc----ceEEEecCCCCC-c------ccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCC
Q psy5743 473 YLRS----QIGSVSQEPTLF-S------GTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIM 541 (644)
Q Consensus 473 ~lr~----~i~~V~Q~~~Lf-~------gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~ 541 (644)
.+|+ .|++++|+|.-= | .-|.|-|.+-+.-...+-.+++.+.++.+|+.+-=. .+..-...
T Consensus 86 ~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~--------rl~~yPHe 157 (534)
T COG4172 86 QLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEK--------RLDAYPHE 157 (534)
T ss_pred HHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhh--------hhhhCCcc
Confidence 9887 699999999732 2 225555655432222355677888888888765211 22333468
Q ss_pred CChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEEEeCCeEE
Q psy5743 542 LSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIR-KSNQICVLDKGKIV 618 (644)
Q Consensus 542 LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~-~aD~Iivl~~G~iv 618 (644)
||||||||+.||-||..+|++||=||||.|||.....+|++.|+++.+ +..+++|||+|..++ .||+|+||.+|+|+
T Consensus 158 LSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~iv 237 (534)
T COG4172 158 LSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIV 237 (534)
T ss_pred cCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEe
Confidence 999999999999999999999999999999999999999999988753 789999999999995 59999999999999
Q ss_pred EecChhHHhcCCCcHHHHHH
Q psy5743 619 EIGSYAHLIKNPNSMFNKLM 638 (644)
Q Consensus 619 e~Gt~~eLl~~~~~~y~~l~ 638 (644)
|.|+-++|.+.+...|.+..
T Consensus 238 E~~~t~~lF~~PqHpYTr~L 257 (534)
T COG4172 238 ETGTTETLFAAPQHPYTRKL 257 (534)
T ss_pred ecCcHHHHhhCCCChHHHHH
Confidence 99999999998888887664
No 347
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=2.2e-35 Score=331.25 Aligned_cols=194 Identities=25% Similarity=0.355 Sum_probs=162.4
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
-++++|++++|++ ..|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++ ..+
T Consensus 340 ~l~~~~ls~~~~~----~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-------------~~i 402 (590)
T PRK13409 340 LVEYPDLTKKLGD----FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-------------LKI 402 (590)
T ss_pred EEEEcceEEEECC----EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-------------eeE
Confidence 4899999999963 24999999999999999999999999999999999999999999986 169
Q ss_pred EEEecCCCC-CcccHHHHHhcCCCCCCCCC-HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHH
Q psy5743 479 GSVSQEPTL-FSGTIYENILYGVNDSSSVT-KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARAL 556 (644)
Q Consensus 479 ~~V~Q~~~L-f~gTIreNI~~g~~~~~~~~-~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAl 556 (644)
+|+||++.+ ++.|++||+.++... .+ ...+.++++..++.+ .....-..||||||||++|||||
T Consensus 403 ~y~~Q~~~~~~~~tv~e~l~~~~~~---~~~~~~~~~~L~~l~l~~-----------~~~~~~~~LSGGe~QRvaiAraL 468 (590)
T PRK13409 403 SYKPQYIKPDYDGTVEDLLRSITDD---LGSSYYKSEIIKPLQLER-----------LLDKNVKDLSGGELQRVAIAACL 468 (590)
T ss_pred EEecccccCCCCCcHHHHHHHHhhh---cChHHHHHHHHHHCCCHH-----------HHhCCcccCCHHHHHHHHHHHHH
Confidence 999999875 567999999986322 22 233445555555432 22334457999999999999999
Q ss_pred ccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEEEeCCeEEEecChh
Q psy5743 557 IKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYA 624 (644)
Q Consensus 557 l~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~ 624 (644)
.++|++|||||||++||.++...+.+.|+++.+ ++|+|+|||++..+. .||+|++|+ |++...|+..
T Consensus 469 ~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~-~~~~~~g~~~ 538 (590)
T PRK13409 469 SRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFE-GEPGKHGHAS 538 (590)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEc-CcceeeeecC
Confidence 999999999999999999999999999998753 789999999999875 599999996 4888777733
No 348
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.9e-35 Score=276.51 Aligned_cols=208 Identities=31% Similarity=0.428 Sum_probs=175.9
Q ss_pred CCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCC--CC-c
Q psy5743 413 PDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPT--LF-S 489 (644)
Q Consensus 413 ~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~--Lf-~ 489 (644)
.++++|+++||+|+.|++|-|+|.+|+|||||++.+.|-+.|++|+|+|||+|+..++...-...++-|+|||- .+ +
T Consensus 17 ~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~ 96 (263)
T COG1101 17 LEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPE 96 (263)
T ss_pred hHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCccc
Confidence 35789999999999999999999999999999999999999999999999999999999998889999999997 34 4
Q ss_pred ccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeeccc
Q psy5743 490 GTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEAT 569 (644)
Q Consensus 490 gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaT 569 (644)
-||.||+.++..-...-.-.--...-+.....+.+..+|.|++-.++++-.-|||||||=++|+-|.++.|+||+|||=|
T Consensus 97 lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEHT 176 (263)
T COG1101 97 LTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHT 176 (263)
T ss_pred ccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecchh
Confidence 69999999875321100011111122344445567889999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHc--CCceEEEEccCchH-HhhcCEEEEEeCCeEEEe
Q psy5743 570 SALDAENEYLVQSAIEKLI--EGKTVLTIAHRLST-IRKSNQICVLDKGKIVEI 620 (644)
Q Consensus 570 SaLD~~~e~~i~~~l~~~~--~~~TvI~IaHrl~~-i~~aD~Iivl~~G~ive~ 620 (644)
+||||.+...|++.=.+.- .+-|.++|||.++- +..-+|.++|++|+|+-.
T Consensus 177 AALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlD 230 (263)
T COG1101 177 AALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLD 230 (263)
T ss_pred hcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEEE
Confidence 9999999999888765543 36799999999986 577799999999999954
No 349
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.7e-35 Score=331.53 Aligned_cols=211 Identities=24% Similarity=0.361 Sum_probs=159.9
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
|+++|++++|++ +++|+|+||+|++|+++|||||||||||||+++|+|+++|++|+|.++|.. .++
T Consensus 2 i~i~nls~~~g~---~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~-----------~i~ 67 (638)
T PRK10636 2 IVFSSLQIRRGV---RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNW-----------QLA 67 (638)
T ss_pred EEEEEEEEEeCC---ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC-----------EEE
Confidence 789999999963 469999999999999999999999999999999999999999999999842 489
Q ss_pred EEecCCCCCcccHHHHHhcCCCCCCCCC-----------HHHHHHHHH----------HHhhccchhhhhcCcc-ccccC
Q psy5743 480 SVSQEPTLFSGTIYENILYGVNDSSSVT-----------KSDIIHAAK----------EANAYGFVIDFKNGFD-TIVGE 537 (644)
Q Consensus 480 ~V~Q~~~Lf~gTIreNI~~g~~~~~~~~-----------~~~i~~a~~----------~a~l~~~i~~lp~Gl~-T~ige 537 (644)
|++|++..+..|+.+++.-+.......+ ...+..... ...+.+.+..+ |+. .....
T Consensus 68 ~~~q~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l--gl~~~~~~~ 145 (638)
T PRK10636 68 WVNQETPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGL--GFSNEQLER 145 (638)
T ss_pred EEecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhC--CCCchhhcC
Confidence 9999766566676666542110000000 000000000 00111112222 332 12233
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh-hcCEEEEEeCCe
Q psy5743 538 RGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIR-KSNQICVLDKGK 616 (644)
Q Consensus 538 ~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ 616 (644)
.-..||||||||++|||||+.+|++|||||||++||.++...+.+.|.+. +.|+|+|||+...+. .||+|++|++|+
T Consensus 146 ~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~--~~tviivsHd~~~l~~~~d~i~~L~~G~ 223 (638)
T PRK10636 146 PVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY--QGTLILISHDRDFLDPIVDKIIHIEQQS 223 (638)
T ss_pred chhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHhcCEEEEEeCCE
Confidence 45679999999999999999999999999999999999999999999876 579999999999985 589999999999
Q ss_pred EE-EecChhHHhc
Q psy5743 617 IV-EIGSYAHLIK 628 (644)
Q Consensus 617 iv-e~Gt~~eLl~ 628 (644)
++ ..|+|++...
T Consensus 224 i~~~~g~~~~~~~ 236 (638)
T PRK10636 224 LFEYTGNYSSFEV 236 (638)
T ss_pred EEEecCCHHHHHH
Confidence 97 4789887764
No 350
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.3e-35 Score=279.85 Aligned_cols=213 Identities=27% Similarity=0.389 Sum_probs=175.1
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCCh-HHHhcc
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDP-MYLRSQ 477 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~-~~lr~~ 477 (644)
-|+++||+++|. ++++|+|||++|+|||.-+|+||+|||||||++++.|.++|++|.+.+-|+....-+. .++|++
T Consensus 31 li~l~~v~v~r~---gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~ 107 (257)
T COG1119 31 LIELKNVSVRRN---GKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKR 107 (257)
T ss_pred eEEecceEEEEC---CEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHH
Confidence 499999999996 4689999999999999999999999999999999999999999999999999998888 999999
Q ss_pred eEEEec---CCCCCcccHHHHHhcCCCC-----CCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHH
Q psy5743 478 IGSVSQ---EPTLFSGTIYENILYGVND-----SSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQR 549 (644)
Q Consensus 478 i~~V~Q---~~~Lf~gTIreNI~~g~~~-----~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQR 549 (644)
||+|+- +.+.=+.+++|=+.-|.-+ ..+.++++..+|-...... |.....+..=..||-|||||
T Consensus 108 IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~--------g~~~la~r~~~~LS~Ge~rr 179 (257)
T COG1119 108 IGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELL--------GAKHLADRPFGSLSQGEQRR 179 (257)
T ss_pred hCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHc--------chhhhccCchhhcCHhHHHH
Confidence 999983 3333366777776633211 0135666555543333221 33333344456799999999
Q ss_pred HHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC---CceEEEEccCchHH-hhcCEEEEEeCCeEEEecC
Q psy5743 550 IAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE---GKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGS 622 (644)
Q Consensus 550 iaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~---~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt 622 (644)
+.|||||.++|++|||||||++||......+.+.+.++.. ..|+|+|||+.+.+ ...++++.+++|+++.+|.
T Consensus 180 vLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~g~ 256 (257)
T COG1119 180 VLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQGK 256 (257)
T ss_pred HHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceeeccc
Confidence 9999999999999999999999999999999999988753 56899999999987 5679999999999998874
No 351
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=2.7e-35 Score=358.78 Aligned_cols=205 Identities=23% Similarity=0.264 Sum_probs=170.8
Q ss_pred CccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccC----CCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCc-
Q psy5743 415 AVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLY----DPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFS- 489 (644)
Q Consensus 415 ~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~----~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~- 489 (644)
+++|+|+|+++++||.+||+||||||||||+|+|+|.. .|.+|+|.+||+++.+.. ..+|+.++||+|++.+|.
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~-~~~r~~i~yv~Q~d~~~~~ 152 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIK-KHYRGDVVYNAETDVHFPH 152 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHH-hhcCceeEEeccccccCCC
Confidence 46899999999999999999999999999999999986 579999999999987654 346778999999998887
Q ss_pred ccHHHHHhcCCC----CC--CCCCHHHHH-----HHHHHHhhccchhhhhcCccccccC-CCCCCChhHHHHHHHHHHHc
Q psy5743 490 GTIYENILYGVN----DS--SSVTKSDII-----HAAKEANAYGFVIDFKNGFDTIVGE-RGIMLSGGQKQRIAIARALI 557 (644)
Q Consensus 490 gTIreNI~~g~~----~~--~~~~~~~i~-----~a~~~a~l~~~i~~lp~Gl~T~ige-~G~~LSGGQkQRiaLARAll 557 (644)
-|++||+.|+.. .. ...++++.. ++++..+ |.+-.||.||+ ....||||||||++|||||+
T Consensus 153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg-------L~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~ 225 (1394)
T TIGR00956 153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYG-------LSHTRNTKVGNDFVRGVSGGERKRVSIAEASL 225 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcC-------cccccCceeCCCcCCCCCcccchHHHHHHHHH
Confidence 599999998621 00 012333322 2333333 34457889986 46789999999999999999
Q ss_pred cCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCch-H-HhhcCEEEEEeCCeEEEecChhHHh
Q psy5743 558 KKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLS-T-IRKSNQICVLDKGKIVEIGSYAHLI 627 (644)
Q Consensus 558 ~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~-~-i~~aD~Iivl~~G~ive~Gt~~eLl 627 (644)
.+|+|++||||||+||+.+...+.+.|+++.+ ++|+|+++|+++ . ...+|+|++|++|+++..|+.+++.
T Consensus 226 ~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~ 299 (1394)
T TIGR00956 226 GGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAK 299 (1394)
T ss_pred hCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHH
Confidence 99999999999999999999999999999763 789999999974 3 4679999999999999999998873
No 352
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=4.3e-35 Score=266.68 Aligned_cols=217 Identities=28% Similarity=0.461 Sum_probs=177.8
Q ss_pred EEEEEEE--EEcCC----CCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHH
Q psy5743 400 IDFNNIR--FSYPS----RPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMY 473 (644)
Q Consensus 400 I~~~~vs--f~Y~~----~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~ 473 (644)
++++|+| |.|.. +....+.+.|||++++|+++||+|.+|||||||+|.|.|..+|++|+|++||+++.-=|...
T Consensus 5 LeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~ 84 (267)
T COG4167 5 LEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSF 84 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHh
Confidence 4566664 44421 12335789999999999999999999999999999999999999999999999999888888
Q ss_pred HhcceEEEecCCC-----------CCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCC
Q psy5743 474 LRSQIGSVSQEPT-----------LFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIML 542 (644)
Q Consensus 474 lr~~i~~V~Q~~~-----------Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~L 542 (644)
-.++|-+++|||. +.++.++-|-.+.. +.-.+++.+.++.+|+. |+--+.. -..|
T Consensus 85 R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~----~~R~~~i~~TL~~VGL~------Pdhan~~----~~~l 150 (267)
T COG4167 85 RSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEP----EQRRKQIFETLRMVGLL------PDHANYY----PHML 150 (267)
T ss_pred hhhheeeeecCCccccChhhhhhhHhcchhhhcccCCh----HHHHHHHHHHHHHhccC------ccccccc----hhhc
Confidence 8889999999974 33444444443332 24567899999999985 3322222 3579
Q ss_pred ChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc--CCceEEEEccCchHHhh-cCEEEEEeCCeEEE
Q psy5743 543 SGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI--EGKTVLTIAHRLSTIRK-SNQICVLDKGKIVE 619 (644)
Q Consensus 543 SGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~--~~~TvI~IaHrl~~i~~-aD~Iivl~~G~ive 619 (644)
|-|||||+||||||.-+|+|+|-|||..+||..-..++.+...++. .|..-|.|+.++-.+++ +|+|+||++|+++|
T Consensus 151 a~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE 230 (267)
T COG4167 151 APGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVE 230 (267)
T ss_pred CchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceee
Confidence 9999999999999999999999999999999998888887775543 37899999999999976 89999999999999
Q ss_pred ecChhHHhcCC
Q psy5743 620 IGSYAHLIKNP 630 (644)
Q Consensus 620 ~Gt~~eLl~~~ 630 (644)
.|...+++..+
T Consensus 231 ~G~t~~v~a~P 241 (267)
T COG4167 231 RGSTADVLASP 241 (267)
T ss_pred cCChhhhhcCC
Confidence 99999998754
No 353
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=3.8e-34 Score=326.57 Aligned_cols=209 Identities=27% Similarity=0.463 Sum_probs=158.1
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
|+++|++++|++ .++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.. .++
T Consensus 4 l~i~~ls~~~~~---~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~-----------~~~ 69 (635)
T PRK11147 4 ISIHGAWLSFSD---APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDL-----------IVA 69 (635)
T ss_pred EEEeeEEEEeCC---ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCC-----------EEE
Confidence 789999999963 469999999999999999999999999999999999999999999998731 367
Q ss_pred EEecCCCC-CcccHHHHHhcCCCC---------------CCCCCHHHHHHHHH-------------HHhhccchhhhhcC
Q psy5743 480 SVSQEPTL-FSGTIYENILYGVND---------------SSSVTKSDIIHAAK-------------EANAYGFVIDFKNG 530 (644)
Q Consensus 480 ~V~Q~~~L-f~gTIreNI~~g~~~---------------~~~~~~~~i~~a~~-------------~a~l~~~i~~lp~G 530 (644)
+++|++.. ..+++.+++..+... .....++.+..... ...+.+.+..+ |
T Consensus 70 ~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--g 147 (635)
T PRK11147 70 RLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQL--G 147 (635)
T ss_pred EeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhC--C
Confidence 88887642 236677765322100 00000111110000 00111112221 2
Q ss_pred ccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhh-cCEE
Q psy5743 531 FDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRK-SNQI 609 (644)
Q Consensus 531 l~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~-aD~I 609 (644)
+. ....-..||||||||++|||||+.+|+||||||||++||.++...+.+.|.++ +.|+|+|||++..+.. ||+|
T Consensus 148 l~--~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~--~~tvlivsHd~~~l~~~~d~i 223 (635)
T PRK11147 148 LD--PDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF--QGSIIFISHDRSFIRNMATRI 223 (635)
T ss_pred CC--CCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHhcCeE
Confidence 21 13344679999999999999999999999999999999999999999999887 4699999999999864 9999
Q ss_pred EEEeCCeEEE-ecChhHHhc
Q psy5743 610 CVLDKGKIVE-IGSYAHLIK 628 (644)
Q Consensus 610 ivl~~G~ive-~Gt~~eLl~ 628 (644)
++|++|+++. .|+|++.++
T Consensus 224 ~~L~~G~i~~~~g~~~~~~~ 243 (635)
T PRK11147 224 VDLDRGKLVSYPGNYDQYLL 243 (635)
T ss_pred EEEECCEEEEecCCHHHHHH
Confidence 9999999984 699988765
No 354
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=5.9e-35 Score=354.40 Aligned_cols=210 Identities=27% Similarity=0.415 Sum_probs=170.2
Q ss_pred CccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCC---CcEEEECCccCCCCChHHHhcceEEEecCCCCCc-c
Q psy5743 415 AVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQ---NGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFS-G 490 (644)
Q Consensus 415 ~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~---~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~-g 490 (644)
..+|+|+|++++|||.++|+||||||||||+|+|+|.++|+ +|+|.+||+++.+... |+.++||+|++.+|. .
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~---~~~i~yv~Q~d~~~~~l 254 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVP---RKTSAYISQNDVHVGVM 254 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcc---cceeEEecccccCCCcC
Confidence 45899999999999999999999999999999999999998 9999999999876643 778999999988776 5
Q ss_pred cHHHHHhcCCCCC---C------CCCH----------HHH---HHHHHHHh------hccchh--hhhcCccccccCC-C
Q psy5743 491 TIYENILYGVNDS---S------SVTK----------SDI---IHAAKEAN------AYGFVI--DFKNGFDTIVGER-G 539 (644)
Q Consensus 491 TIreNI~~g~~~~---~------~~~~----------~~i---~~a~~~a~------l~~~i~--~lp~Gl~T~ige~-G 539 (644)
|++||+.|+..-. . +.+. +++ .+++...+ .++.++ .|.+-.||.||+. -
T Consensus 255 TV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~ 334 (1470)
T PLN03140 255 TVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMI 334 (1470)
T ss_pred cHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccc
Confidence 9999999852100 0 0111 111 11111111 111222 2455568999864 4
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCc--hHHhhcCEEEEEeCC
Q psy5743 540 IMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRL--STIRKSNQICVLDKG 615 (644)
Q Consensus 540 ~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl--~~i~~aD~Iivl~~G 615 (644)
.+||||||||++||||++.+|++++|||||++||+.+...+.+.|+++.+ ++|+|+++|++ +....+|+|++|++|
T Consensus 335 rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G 414 (1470)
T PLN03140 335 RGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEG 414 (1470)
T ss_pred cCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCc
Confidence 68999999999999999999999999999999999999999999999753 78999999997 456889999999999
Q ss_pred eEEEecChhHHh
Q psy5743 616 KIVEIGSYAHLI 627 (644)
Q Consensus 616 ~ive~Gt~~eLl 627 (644)
+++..|+.++++
T Consensus 415 ~ivy~G~~~~~~ 426 (1470)
T PLN03140 415 QIVYQGPRDHIL 426 (1470)
T ss_pred eEEEeCCHHHHH
Confidence 999999999886
No 355
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.8e-34 Score=253.31 Aligned_cols=198 Identities=24% Similarity=0.403 Sum_probs=166.1
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCC---CcEEEECCccCCCCChHHHh
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQ---NGKILIDGVDIKELDPMYLR 475 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~---~G~I~idg~~i~~~~~~~lr 475 (644)
-+.++||+.+-++ ...|.|+|++|.+||++-|.||||||||||+.-+.|.+.+. +|++.+|++++..+... +
T Consensus 2 ~l~l~nvsl~l~g---~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~--q 76 (213)
T COG4136 2 MLCLKNVSLRLPG---SCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAA--Q 76 (213)
T ss_pred ceeeeeeeecCCC---ceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchh--h
Confidence 3678999988864 47899999999999999999999999999999999999985 89999999999988754 6
Q ss_pred cceEEEecCCCCCc-ccHHHHHhcCCCCCC--CCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHH
Q psy5743 476 SQIGSVSQEPTLFS-GTIYENILYGVNDSS--SVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAI 552 (644)
Q Consensus 476 ~~i~~V~Q~~~Lf~-gTIreNI~~g~~~~~--~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaL 552 (644)
+++|+..||++||. -++-+||.|.-|..- ++.+.....|++..+++++..+-| .+||||||.|++|
T Consensus 77 Rq~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP-----------~tlSGGQrARvaL 145 (213)
T COG4136 77 RQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDP-----------ATLSGGQRARVAL 145 (213)
T ss_pred hheeeeecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcCh-----------hhcCcchHHHHHH
Confidence 89999999999997 599999999987521 233445667888888888777666 5799999999999
Q ss_pred HHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHH--cCCceEEEEccCchHHhhcCEEEEE
Q psy5743 553 ARALIKKSKILLLDEATSALDAENEYLVQSAIEKL--IEGKTVLTIAHRLSTIRKSNQICVL 612 (644)
Q Consensus 553 ARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~--~~~~TvI~IaHrl~~i~~aD~Iivl 612 (644)
-|+|+.+|+.++||||+|.||..-...+.+-.... ..+.-+|.|||+++-+..-.+|+-|
T Consensus 146 ~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~DvpagsrVie~ 207 (213)
T COG4136 146 LRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVPAGSRVIEM 207 (213)
T ss_pred HHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCeeeee
Confidence 99999999999999999999998666555554321 2378899999999988865555544
No 356
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=1.6e-34 Score=324.26 Aligned_cols=193 Identities=24% Similarity=0.324 Sum_probs=159.2
Q ss_pred EEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEE-----------ECCccCCCCCh
Q psy5743 403 NNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKIL-----------IDGVDIKELDP 471 (644)
Q Consensus 403 ~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~-----------idg~~i~~~~~ 471 (644)
++++.+|++ ...+|++++ ++++||+++|+||||||||||+|+|+|+++|++|+|. ++|.++.++..
T Consensus 77 ~~~~~~yg~--~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~ 153 (590)
T PRK13409 77 EEPVHRYGV--NGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFK 153 (590)
T ss_pred cCceEEecC--CceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHH
Confidence 458999964 246899999 9999999999999999999999999999999999998 99999876532
Q ss_pred HH--Hhcc----eEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChh
Q psy5743 472 MY--LRSQ----IGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGG 545 (644)
Q Consensus 472 ~~--lr~~----i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGG 545 (644)
+- .+.. +.+++|.|.+|.+|++||+... ..++++.++++..++.+. .++. -.+||||
T Consensus 154 ~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~------~~~~~~~~~l~~l~l~~~-------~~~~----~~~LSgG 216 (590)
T PRK13409 154 KLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKV------DERGKLDEVVERLGLENI-------LDRD----ISELSGG 216 (590)
T ss_pred HHhccCcceeecccchhhhhhhhcchHHHHHHhh------hHHHHHHHHHHHcCCchh-------hcCC----hhhCCHH
Confidence 21 1123 4456667788899999999753 124566677777665332 2333 3579999
Q ss_pred HHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh-hcCEEEEEeCC
Q psy5743 546 QKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIR-KSNQICVLDKG 615 (644)
Q Consensus 546 QkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~-~aD~Iivl~~G 615 (644)
||||++||||++++|++||||||||+||..+...+.+.|+++.+++|+|+|+|+++.+. .||+|++|++|
T Consensus 217 e~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 217 ELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAVLDYLADNVHIAYGE 287 (590)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 99999999999999999999999999999999999999998866899999999999985 48999999873
No 357
>KOG0064|consensus
Probab=100.00 E-value=2.6e-30 Score=268.76 Aligned_cols=501 Identities=19% Similarity=0.252 Sum_probs=318.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 86 LLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVYLMNVSAQSITKKLRERLFGSII 165 (644)
Q Consensus 86 ~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll 165 (644)
+.+.-+.+++.++-+=++++..++..+..++...+.-|.++ .+-..+.+-.-.|+..+.+-.+..++....|+..+
T Consensus 126 ~Li~RTfLSl~VA~LdGqlVk~Ivrk~~r~F~~~LlkW~li----aiPAtFvNS~Iryle~klaLafrtrL~~h~y~~Y~ 201 (728)
T KOG0064|consen 126 FLISRTFLSLFVAKLDGQLVKNIVRKRGRQFLWDLLKWFLI----AIPASFVNSAIRYLESKLALAFRTRLTRHAYDMYL 201 (728)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHhh----hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444566666777777888877766554443333222221 22223333333455555566666666666666666
Q ss_pred cCChhhhhccC-hhH---HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH--HHHHHHHH
Q psy5743 166 SQETAYFDKHK-TGE---LINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLA--LISLI--IVPPVAGL 237 (644)
Q Consensus 166 ~~~~~~~~~~~-~G~---i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~--li~l~--~~~l~~~~ 237 (644)
... .||.-.+ -|. .=++++.|+..+.+...+...++.--++-+++....+.-.+...+ .+.++ ...+-.-+
T Consensus 202 snq-TyY~Vsn~d~~i~n~D~sLTeDI~~Fs~svahLysnLtKP~lDl~l~s~~L~~s~~s~g~~~~~~~~lvv~lTa~i 280 (728)
T KOG0064|consen 202 SNQ-TFYKVSNLDSVIENADNSLTEDIAKFSDSVAHLYSNLTKPVLDLILISFTLLDSATSVGAAGITLAGLVVYLTAFI 280 (728)
T ss_pred ccC-ceEEEecccchhcCccchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhccccccchhhhhhHHHHHHHH
Confidence 554 4443322 122 225677887776665555444433323322222222221111111 11111 11111223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 238 AIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAKGVFFGFTGLSGNA 317 (644)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (644)
.+.+..++-++..+.......+...=+..+.|-++|-.|+-.+.+.++..+..+..........+.+.++.-+.++++--
T Consensus 281 Lr~~sP~Fg~Lv~eeA~r~g~lr~~Hs~ii~NsEEIAfy~GhkvE~~ql~~sy~~L~~qm~li~k~r~~YiMleqF~mKY 360 (728)
T KOG0064|consen 281 LRAVSPKFGKLVAEEAARKGYLRYLHSNIITNSEEIAFYGGHKVELTQVDESYNRLVEQMNLIFKVRLWYIMLEQFVMKY 360 (728)
T ss_pred HHHhCCchhhHHHHHHhhccHHHHHHHHHhccHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566666666666666667788999999999999999999999888887766655555555555444443210
Q ss_pred HHHHHHHHHHHH------------HHcCCcC---Hh--HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 318 IILSVLYYGGVM------------VSYETIT---VG--NLSSFLL---YAAYIGISIGGLSNFYSELNKGLGACHRLWEI 377 (644)
Q Consensus 318 ~~~~vl~~g~~~------------v~~g~~t---~g--~l~a~~~---~~~~~~~~l~~l~~~~~~~~~~~~s~~Rl~~~ 377 (644)
.|-|+-+ ...+... .| ..-.|.. +.......+..+...+.++++-...-.|+.+.
T Consensus 361 -----vWsg~GlvmvsiPI~~~t~~s~~~~~~~e~~~srt~~f~t~r~LL~saAdAieRlMssyKeItqLaGyt~Rv~~m 435 (728)
T KOG0064|consen 361 -----TWSGTGLVMVSIPILTSTLASEGTLQLSEEGNSRTKEFITNRRLLLSAADAIERLMSSYKEITQLAGYTNRVFTM 435 (728)
T ss_pred -----hhccCceEEEEeeeeecccCCCCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 1111111 1122211 01 1222222 23334455666777777777666677788755
Q ss_pred Hhc----------C---CCccCCC--------CCccC---CCCCccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEE
Q psy5743 378 MER----------E---PLISTSG--------GKFFS---HSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSV 433 (644)
Q Consensus 378 l~~----------~---~~~~~~~--------~~~~~---~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaI 433 (644)
++- . ++..+.. .+.+. ......|.++||-.--|. ...+..++||+|++|-.+.|
T Consensus 436 f~v~~dv~~g~~~k~~v~e~~~~~~~~e~r~s~~l~~~~~i~~~~gI~lenIpvItP~--~~vvv~~Ltf~i~~G~hLLI 513 (728)
T KOG0064|consen 436 FSVLHDVHKGNYNKTAVPEILSSRTIDESRNSNPLPTTDAIRNFNGIILENIPVITPA--GDVLVPKLTFQIEPGMHLLI 513 (728)
T ss_pred HHHHHHHhcccccccccCchhhccCccccccCCcCCccchhhcccceEEecCceeccC--cceeecceeEEecCCceEEE
Confidence 431 0 0100000 00000 012235999999888775 34688999999999999999
Q ss_pred ECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCC----CCCCCHH
Q psy5743 434 IGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVND----SSSVTKS 509 (644)
Q Consensus 434 vG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~----~~~~~~~ 509 (644)
.||+|||||+|.+.|.|++|...|...+-- +.++-|+||.|+.=-||+||-|-|-+.- ....+|.
T Consensus 514 tGPNGCGKSSLfRILggLWPvy~g~L~~P~-----------~~~mFYIPQRPYms~gtlRDQIIYPdS~e~~~~kg~~d~ 582 (728)
T KOG0064|consen 514 TGPNGCGKSSLFRILGGLWPVYNGLLSIPR-----------PNNIFYIPQRPYMSGGTLRDQIIYPDSSEQMKRKGYTDQ 582 (728)
T ss_pred ECCCCccHHHHHHHHhccCcccCCeeecCC-----------CcceEeccCCCccCcCcccceeecCCcHHHHHhcCCCHH
Confidence 999999999999999999999988887643 2369999999999999999999985421 1247899
Q ss_pred HHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC
Q psy5743 510 DIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE 589 (644)
Q Consensus 510 ~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~ 589 (644)
++.+.+..+.++- |.+-..|+|.. -+=-.-||||+|||++.||.+|++|+.-+|||+|||+-.+-|..+.++.++.
T Consensus 583 dL~~iL~~v~L~~-i~qr~~g~da~-~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~~-- 658 (728)
T KOG0064|consen 583 DLEAILDIVHLEH-ILQREGGWDAV-RDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKDA-- 658 (728)
T ss_pred HHHHHHHHhhHHH-HHHhccChhhh-ccHHhhccchHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHhc--
Confidence 9999999999864 44545666653 3334569999999999999999999999999999999999999999999887
Q ss_pred CceEEEEccCchHHhhcCEEEEEe
Q psy5743 590 GKTVLTIAHRLSTIRKSNQICVLD 613 (644)
Q Consensus 590 ~~TvI~IaHrl~~i~~aD~Iivl~ 613 (644)
+.+.|-||||++..+.-...+-.+
T Consensus 659 gi~llsithrpslwk~h~~ll~~d 682 (728)
T KOG0064|consen 659 GISLLSITHRPSLWKYHTHLLEFD 682 (728)
T ss_pred CceEEEeecCccHHHHHHHHHhcc
Confidence 899999999999998877777763
No 358
>KOG0061|consensus
Probab=100.00 E-value=1.6e-33 Score=316.89 Aligned_cols=220 Identities=29% Similarity=0.437 Sum_probs=186.9
Q ss_pred ccEEEEEEEEEcCCCC--CCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCC---CCcEEEECCccCCCCChH
Q psy5743 398 GEIDFNNIRFSYPSRP--DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDP---QNGKILIDGVDIKELDPM 472 (644)
Q Consensus 398 ~~I~~~~vsf~Y~~~~--~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p---~~G~I~idg~~i~~~~~~ 472 (644)
..++++|+++.-++.. .+.+|+|||.+++|||..||.||||||||||++.|+|-.++ .+|+|++|| +..+.+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG---~~~~~~ 100 (613)
T KOG0061|consen 24 VKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNG---RPRDSR 100 (613)
T ss_pred ceeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECC---ccCchh
Confidence 3589999999987642 47899999999999999999999999999999999999975 799999999 556778
Q ss_pred HHhcceEEEecCCCCCc-ccHHHHHhcCCCCCCC--CCHHH----HHHHHHHHhhccchhhhhcCccccccC-CCCCCCh
Q psy5743 473 YLRSQIGSVSQEPTLFS-GTIYENILYGVNDSSS--VTKSD----IIHAAKEANAYGFVIDFKNGFDTIVGE-RGIMLSG 544 (644)
Q Consensus 473 ~lr~~i~~V~Q~~~Lf~-gTIreNI~~g~~~~~~--~~~~~----i~~a~~~a~l~~~i~~lp~Gl~T~ige-~G~~LSG 544 (644)
.+++.+|||+||+.++. -||+|++.|...-..+ .+.++ +++..+.-++. +=-||.||. ++.++||
T Consensus 101 ~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~-------~~~~t~ig~~~~rgiSG 173 (613)
T KOG0061|consen 101 SFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLE-------KCADTLIGNPGIRGLSG 173 (613)
T ss_pred hhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCh-------hhccceecCCCCCcccc
Confidence 89999999999999886 5999999987532111 23333 34444444432 236788985 4468999
Q ss_pred hHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchH--HhhcCEEEEEeCCeEEEec
Q psy5743 545 GQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLST--IRKSNQICVLDKGKIVEIG 621 (644)
Q Consensus 545 GQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~--i~~aD~Iivl~~G~ive~G 621 (644)
|||+|++||--++.||+||+||||||+||+.+...+.+.|+++. +|||||+.=|+++. ....|++++|.+|+++..|
T Consensus 174 GErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G 253 (613)
T KOG0061|consen 174 GERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSG 253 (613)
T ss_pred chhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEec
Confidence 99999999999999999999999999999999999999999875 58999999999985 5889999999999999999
Q ss_pred ChhHHh
Q psy5743 622 SYAHLI 627 (644)
Q Consensus 622 t~~eLl 627 (644)
+.+++.
T Consensus 254 ~~~~~~ 259 (613)
T KOG0061|consen 254 SPRELL 259 (613)
T ss_pred CHHHHH
Confidence 998875
No 359
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-32 Score=260.08 Aligned_cols=217 Identities=29% Similarity=0.414 Sum_probs=185.3
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhcc--CCCCCcEEEECCccCCCCChHHHhc-
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRL--YDPQNGKILIDGVDIKELDPMYLRS- 476 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~--~~p~~G~I~idg~~i~~~~~~~lr~- 476 (644)
++++|++.+-.++ +.+|+++||+|++||+.||-||+|||||||.+.|+|. |++++|+|.+||.||.++++++-.+
T Consensus 4 L~I~dLhv~v~~~--keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~ 81 (251)
T COG0396 4 LEIKDLHVEVEGK--KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARA 81 (251)
T ss_pred eEEeeeEEEecCc--hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhc
Confidence 7899999988532 4899999999999999999999999999999999997 5899999999999999999988744
Q ss_pred ceEEEecCCCCCcc-cHHHHHhcCCCCCCC------CCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHH
Q psy5743 477 QIGSVSQEPTLFSG-TIYENILYGVNDSSS------VTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQR 549 (644)
Q Consensus 477 ~i~~V~Q~~~Lf~g-TIreNI~~g~~~~~~------~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQR 549 (644)
-|....|.|.=+.| |+.+=+..+.+.... ...+++.++++..++++. =++..|++ .+|||+|.|
T Consensus 82 GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~------~l~R~vN~---GFSGGEkKR 152 (251)
T COG0396 82 GIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEE------FLERYVNE---GFSGGEKKR 152 (251)
T ss_pred CCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHH------HhhcccCC---CcCcchHHH
Confidence 59999999999988 677776654332111 235667777777777652 13444554 599999999
Q ss_pred HHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhhc--CEEEEEeCCeEEEecChhHH
Q psy5743 550 IAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIRKS--NQICVLDKGKIVEIGSYAHL 626 (644)
Q Consensus 550 iaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~~a--D~Iivl~~G~ive~Gt~~eL 626 (644)
.-|+.+++-+|++.|||||=|+||.++-+.|.+.+.++. ++.++++|||.-..+... |++.||-+|+|+.+|.+ ||
T Consensus 153 ~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG~~-el 231 (251)
T COG0396 153 NEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDP-EL 231 (251)
T ss_pred HHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEecCCH-HH
Confidence 999999999999999999999999999999999998875 478999999999998876 99999999999999999 77
Q ss_pred hc
Q psy5743 627 IK 628 (644)
Q Consensus 627 l~ 628 (644)
..
T Consensus 232 ~~ 233 (251)
T COG0396 232 AE 233 (251)
T ss_pred HH
Confidence 64
No 360
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=6.4e-33 Score=303.60 Aligned_cols=206 Identities=30% Similarity=0.504 Sum_probs=166.0
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
-|+++|++++|+ ++++|+|+||++.+|++++|||++|||||||+|+|.|...|++|+|...+.- ++
T Consensus 3 ~i~~~~ls~~~g---~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~-----------~v 68 (530)
T COG0488 3 MITLENLSLAYG---DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGL-----------RV 68 (530)
T ss_pred eEEEeeeEEeeC---CceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCc-----------eE
Confidence 489999999995 4689999999999999999999999999999999999999999999988721 69
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCCCCCCCCHHHHHHHHHHHh----------------------h---ccchhhhhcCc-
Q psy5743 479 GSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEAN----------------------A---YGFVIDFKNGF- 531 (644)
Q Consensus 479 ~~V~Q~~~Lf~g-TIreNI~~g~~~~~~~~~~~i~~a~~~a~----------------------l---~~~i~~lp~Gl- 531 (644)
+|++|++...++ |++|.+..+..+ ..++.+..+... . ...+...=.|+
T Consensus 69 ~~l~Q~~~~~~~~tv~~~v~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg 143 (530)
T COG0488 69 GYLSQEPPLDPEKTVLDYVIEGFGE-----LRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLG 143 (530)
T ss_pred EEeCCCCCcCCCccHHHHHHhhhHH-----HHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCC
Confidence 999999999975 999999887532 111111111110 0 01111111122
Q ss_pred ----cccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhh-c
Q psy5743 532 ----DTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRK-S 606 (644)
Q Consensus 532 ----~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~-a 606 (644)
++++ .+||||||-|++|||||+.+||+|+|||||++||.++-..+.+.|.+. ++ |+|+|||+-.++.. |
T Consensus 144 ~~~~~~~~----~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~-~g-tviiVSHDR~FLd~V~ 217 (530)
T COG0488 144 FPDEDRPV----SSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY-PG-TVIVVSHDRYFLDNVA 217 (530)
T ss_pred CCcccCch----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC-CC-cEEEEeCCHHHHHHHh
Confidence 3444 469999999999999999999999999999999999999999999865 45 99999999999955 8
Q ss_pred CEEEEEeCCeEE-EecChhHHhcC
Q psy5743 607 NQICVLDKGKIV-EIGSYAHLIKN 629 (644)
Q Consensus 607 D~Iivl~~G~iv-e~Gt~~eLl~~ 629 (644)
++|+.++.|++. ..|+|+.-++.
T Consensus 218 t~I~~ld~g~l~~y~Gny~~~~~~ 241 (530)
T COG0488 218 THILELDRGKLTPYKGNYSSYLEQ 241 (530)
T ss_pred hheEEecCCceeEecCCHHHHHHH
Confidence 999999999876 67898887653
No 361
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=100.00 E-value=7e-34 Score=261.37 Aligned_cols=136 Identities=45% Similarity=0.702 Sum_probs=126.8
Q ss_pred ccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCccc-HHHHH
Q psy5743 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGT-IYENI 496 (644)
Q Consensus 418 L~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gT-IreNI 496 (644)
|+|+||++++|++++|+|+||||||||+++|+|.++|++|+|.+||.++...+...+|+.++|++|++.+|.+. ++||.
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~~ 80 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRENE 80 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999876 99991
Q ss_pred hcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccC
Q psy5743 497 LYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATS 570 (644)
Q Consensus 497 ~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTS 570 (644)
.++++.++++..++.+ ..++.++.+...||||||||++||||++++|+++||||||+
T Consensus 81 ----------~~~~~~~~l~~l~~~~-------~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 81 ----------SDERIEEVLKKLGLED-------LLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp ----------HHHHHHHHHHHTTHGG-------GTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred ----------cccccccccccccccc-------ccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 3677888888888754 46788888899999999999999999999999999999996
No 362
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=4.3e-33 Score=318.17 Aligned_cols=223 Identities=24% Similarity=0.276 Sum_probs=165.9
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccC---CCCCcEEEECCccCCCCC--h--
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLY---DPQNGKILIDGVDIKELD--P-- 471 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~---~p~~G~I~idg~~i~~~~--~-- 471 (644)
.|+++|++|+|++ .++|+|+||+|++|+++||||+||||||||+++|+|.. .|.+|+|.+.++++..-+ .
T Consensus 177 ~I~i~nls~~y~~---~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~ 253 (718)
T PLN03073 177 DIHMENFSISVGG---RDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQ 253 (718)
T ss_pred eEEEceEEEEeCC---CEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHH
Confidence 5999999999963 35999999999999999999999999999999999864 588999986555432111 1
Q ss_pred ----------HHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCH----HHHHHHHHHHhhccc------hhhhh--c
Q psy5743 472 ----------MYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTK----SDIIHAAKEANAYGF------VIDFK--N 529 (644)
Q Consensus 472 ----------~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~----~~i~~a~~~a~l~~~------i~~lp--~ 529 (644)
..+++.+++++|++.+...+..+|...... ...+. +++.++++..++.+. +..+- -
T Consensus 254 ~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~--~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~l 331 (718)
T PLN03073 254 CVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANK--DGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGL 331 (718)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccc--cccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHC
Confidence 123556899999887655566566532111 01122 344444444443221 11110 1
Q ss_pred Cccc-cccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhh-cC
Q psy5743 530 GFDT-IVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRK-SN 607 (644)
Q Consensus 530 Gl~T-~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~-aD 607 (644)
|++. .....-..||||||||++|||||+.+|++|||||||++||+.+...+.+.|+++ +.|+|+|||++..+.. ||
T Consensus 332 gl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~~tviivsHd~~~l~~~~d 409 (718)
T PLN03073 332 SFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW--PKTFIVVSHAREFLNTVVT 409 (718)
T ss_pred CCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCC
Confidence 2221 112233579999999999999999999999999999999999999999999887 7899999999999866 99
Q ss_pred EEEEEeCCeEE-EecChhHHhc
Q psy5743 608 QICVLDKGKIV-EIGSYAHLIK 628 (644)
Q Consensus 608 ~Iivl~~G~iv-e~Gt~~eLl~ 628 (644)
+|++|++|+++ ..|++++..+
T Consensus 410 ~i~~l~~g~i~~~~g~~~~~~~ 431 (718)
T PLN03073 410 DILHLHGQKLVTYKGDYDTFER 431 (718)
T ss_pred EEEEEECCEEEEeCCCHHHHHH
Confidence 99999999996 6788876654
No 363
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1e-32 Score=254.16 Aligned_cols=217 Identities=26% Similarity=0.433 Sum_probs=185.5
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECC-ccCCCCChHHHhc-
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDG-VDIKELDPMYLRS- 476 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg-~~i~~~~~~~lr~- 476 (644)
.++++||+.++++ -.+|+|+||+|.|||.-+|+||+|+||||++.++.|..+|+.|+++++| .|+..++...+.+
T Consensus 5 iL~~~~vsVsF~G---F~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~ 81 (249)
T COG4674 5 ILYLDGVSVSFGG---FKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARA 81 (249)
T ss_pred eEEEeceEEEEcc---eeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHh
Confidence 4789999999975 3589999999999999999999999999999999999999999999999 9999999888755
Q ss_pred ceEEEecCCCCCcc-cHHHHHhcCCCCCC-----------CCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCCh
Q psy5743 477 QIGSVSQEPTLFSG-TIYENILYGVNDSS-----------SVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSG 544 (644)
Q Consensus 477 ~i~~V~Q~~~Lf~g-TIreNI~~g~~~~~-----------~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSG 544 (644)
-||-=+|.|..|.. |++||+-+.....+ ....+++.+.+...++.+. .......||-
T Consensus 82 GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~-----------~~~~A~~LSH 150 (249)
T COG4674 82 GIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDE-----------RDRLAALLSH 150 (249)
T ss_pred ccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchh-----------hhhhhhhhcc
Confidence 59999999999975 99999987654311 1223356666666665443 3344578999
Q ss_pred hHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhh-cCEEEEEeCCeEEEecCh
Q psy5743 545 GQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSY 623 (644)
Q Consensus 545 GQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~-aD~Iivl~~G~ive~Gt~ 623 (644)
||||++-|+--+.++|++|+||||++++-.+.....-+.|+.+...+++++|-|++..++. ||+|-||..|.|...|+.
T Consensus 151 GqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EGsl 230 (249)
T COG4674 151 GQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSL 230 (249)
T ss_pred chhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHHHHHHhhheeEEEeccceeecccH
Confidence 9999999999999999999999999999555555667788888889999999999999954 999999999999999999
Q ss_pred hHHhcC
Q psy5743 624 AHLIKN 629 (644)
Q Consensus 624 ~eLl~~ 629 (644)
+|+-.+
T Consensus 231 d~v~~d 236 (249)
T COG4674 231 DEVQND 236 (249)
T ss_pred HHhhcC
Confidence 998654
No 364
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.98 E-value=6.4e-32 Score=260.09 Aligned_cols=191 Identities=27% Similarity=0.343 Sum_probs=158.9
Q ss_pred CCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCC--ccc
Q psy5743 414 DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLF--SGT 491 (644)
Q Consensus 414 ~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf--~gT 491 (644)
+.++|+||||++.+||.++|||++|||||||+|+|.|.|+|++|+|.++| .++.+---..=| +-|
T Consensus 39 ~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G-------------~v~~li~lg~Gf~pelT 105 (249)
T COG1134 39 EFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTG-------------KVAPLIELGAGFDPELT 105 (249)
T ss_pred eEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcc-------------eEehhhhcccCCCcccc
Confidence 45799999999999999999999999999999999999999999999999 555443333323 458
Q ss_pred HHHHHhcCCCC---CCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecc
Q psy5743 492 IYENILYGVND---SSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEA 568 (644)
Q Consensus 492 IreNI~~g~~~---~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEa 568 (644)
-||||.+-.-- ....-++.+.+..+-+.|.+|+. .|| .+.|-|.+-||+.|=|.--+|+|||+||.
T Consensus 106 GreNi~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~-------~Pv----ktYSSGM~aRLaFsia~~~~pdILllDEv 174 (249)
T COG1134 106 GRENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFID-------QPV----KTYSSGMYARLAFSVATHVEPDILLLDEV 174 (249)
T ss_pred hHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhh-------Cch----hhccHHHHHHHHHhhhhhcCCCEEEEehh
Confidence 99999753210 01123555666778888887753 333 57999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHH-cCCceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHHhc
Q psy5743 569 TSALDAENEYLVQSAIEKL-IEGKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHLIK 628 (644)
Q Consensus 569 TSaLD~~~e~~i~~~l~~~-~~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eLl~ 628 (644)
.|..|+.=.++-.+.+.++ .+++|+|+|||+++.++ .||++++|++|+|...|+.+|.++
T Consensus 175 lavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~ 236 (249)
T COG1134 175 LAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIP 236 (249)
T ss_pred hhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHHH
Confidence 9999999777777778777 67899999999999995 499999999999999999999984
No 365
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.98 E-value=2.3e-32 Score=260.33 Aligned_cols=214 Identities=25% Similarity=0.456 Sum_probs=181.3
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
.+++++|+-+|+ +..+++||||+++||+..+++|++|+||||.+++|+|+++|++|+|.++|.+++.- .+++|
T Consensus 2 ~L~ie~vtK~Fg---~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~----~~~rI 74 (300)
T COG4152 2 ALEIEGVTKSFG---DKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQE----IKNRI 74 (300)
T ss_pred ceEEecchhccC---ceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhh----hhhhc
Confidence 478999999996 46799999999999999999999999999999999999999999999999998764 56699
Q ss_pred EEEecCCCCCc-ccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhc-CccccccCCCCCCChhHHHHHHHHHHH
Q psy5743 479 GSVSQEPTLFS-GTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKN-GFDTIVGERGIMLSGGQKQRIAIARAL 556 (644)
Q Consensus 479 ~~V~Q~~~Lf~-gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~-Gl~T~ige~G~~LSGGQkQRiaLARAl 556 (644)
||.|.+--|+. -|+.|-|.|...- .....+|+.+ .+..|++++.- |+ -.+.-..||-|-.|.|.+--|+
T Consensus 75 GyLPEERGLy~k~tv~dql~yla~L-kGm~~~e~~~-----~~~~wLer~~i~~~---~~~kIk~LSKGnqQKIQfisav 145 (300)
T COG4152 75 GYLPEERGLYPKMTVEDQLKYLAEL-KGMPKAEIQK-----KLQAWLERLEIVGK---KTKKIKELSKGNQQKIQFISAV 145 (300)
T ss_pred ccChhhhccCccCcHHHHHHHHHHh-cCCcHHHHHH-----HHHHHHHhcccccc---ccchHHHhhhhhhHHHHHHHHH
Confidence 99999999996 6899999987532 2244444432 22344554321 22 2344467999999999999999
Q ss_pred ccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhHHhc
Q psy5743 557 IKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHLIK 628 (644)
Q Consensus 557 l~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~eLl~ 628 (644)
+++|+++|||||+|+||+-+.+.+.+.+.++. .+.|+|+-|||++-+ +-||+++.|++|+.|-+|+-++..+
T Consensus 146 iHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~ 219 (300)
T COG4152 146 IHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRR 219 (300)
T ss_pred hcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHH
Confidence 99999999999999999999999999998875 589999999999998 5599999999999999999888754
No 366
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.97 E-value=8.2e-31 Score=287.01 Aligned_cols=202 Identities=28% Similarity=0.456 Sum_probs=174.7
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
-++++|++++|+++ +++++++||.|.+|++||||||+|+|||||+|+|+|...|.+|+|.++-. -++
T Consensus 321 vl~~~~~~~~y~~~--~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~-----------v~i 387 (530)
T COG0488 321 VLEFENVSKGYDGG--RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET-----------VKI 387 (530)
T ss_pred eEEEeccccccCCC--ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc-----------eEE
Confidence 48999999999753 68999999999999999999999999999999999999999999998762 269
Q ss_pred EEEecCC-CCC-cccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHH
Q psy5743 479 GSVSQEP-TLF-SGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARAL 556 (644)
Q Consensus 479 ~~V~Q~~-~Lf-~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAl 556 (644)
||.+|+- .++ +.|+-|++.-+.|+ ..+.++...+...++...- ..++| ..||||||-|+.||+.+
T Consensus 388 gyf~Q~~~~l~~~~t~~d~l~~~~~~---~~e~~~r~~L~~f~F~~~~------~~~~v----~~LSGGEk~Rl~La~ll 454 (530)
T COG0488 388 GYFDQHRDELDPDKTVLEELSEGFPD---GDEQEVRAYLGRFGFTGED------QEKPV----GVLSGGEKARLLLAKLL 454 (530)
T ss_pred EEEEehhhhcCccCcHHHHHHhhCcc---ccHHHHHHHHHHcCCChHH------HhCch----hhcCHhHHHHHHHHHHh
Confidence 9999987 344 44899999877654 4478888888888775432 23344 46999999999999999
Q ss_pred ccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhh-cCEEEEEeCCeEEEe-cChhHHhcC
Q psy5743 557 IKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEI-GSYAHLIKN 629 (644)
Q Consensus 557 l~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~-aD~Iivl~~G~ive~-Gt~~eLl~~ 629 (644)
+.+|.+|||||||.+||.++-..+.++|.+. +-|+|+|||+...+.. |++|+.+++ ++.+. |+|++-.+.
T Consensus 455 ~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f--~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y~~~ 526 (530)
T COG0488 455 LQPPNLLLLDEPTNHLDIESLEALEEALLDF--EGTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDYLEQ 526 (530)
T ss_pred ccCCCEEEEcCCCccCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHHHHh
Confidence 9999999999999999999999999999987 6799999999999955 899999998 77766 888887653
No 367
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=9.5e-32 Score=247.38 Aligned_cols=191 Identities=25% Similarity=0.385 Sum_probs=162.1
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
++.+|++..- .+..++.++||++.+||.+-|+||+|||||||+++|.|+++|++|+|+++|.+++... +++++.+-
T Consensus 3 L~a~~L~~~R---~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~-~~~~~~l~ 78 (209)
T COG4133 3 LEAENLSCER---GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVR-ESYHQALL 78 (209)
T ss_pred chhhhhhhcc---CcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccch-hhHHHHHH
Confidence 3456666554 3568999999999999999999999999999999999999999999999999988754 44577889
Q ss_pred EEecCCCCCc-ccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHcc
Q psy5743 480 SVSQEPTLFS-GTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIK 558 (644)
Q Consensus 480 ~V~Q~~~Lf~-gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~ 558 (644)
|+...+-+=. -|+.||+.|...-....+++.+++|++.+++.++ +++| + .+||-||+.|+||||-++.
T Consensus 79 yLGH~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~-~dlp------~----~~LSAGQqRRvAlArL~ls 147 (209)
T COG4133 79 YLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGL-EDLP------V----GQLSAGQQRRVALARLWLS 147 (209)
T ss_pred HhhccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccc-cccc------h----hhcchhHHHHHHHHHHHcC
Confidence 9988777654 6999999998763222568999999999999875 4444 3 3699999999999999999
Q ss_pred CCCEEEeecccCCCCHHHHHHHHHHHHH-HcCCceEEEEccCchHHhh
Q psy5743 559 KSKILLLDEATSALDAENEYLVQSAIEK-LIEGKTVLTIAHRLSTIRK 605 (644)
Q Consensus 559 ~p~IliLDEaTSaLD~~~e~~i~~~l~~-~~~~~TvI~IaHrl~~i~~ 605 (644)
.+|++||||||++||.+++..+...+.. ..++-.||.-||.+-.+..
T Consensus 148 ~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~~~~ 195 (209)
T COG4133 148 PAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLPIAS 195 (209)
T ss_pred CCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccCCCc
Confidence 9999999999999999999999888865 4467899999999876654
No 368
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=4.8e-31 Score=238.42 Aligned_cols=229 Identities=22% Similarity=0.395 Sum_probs=177.1
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECC-----ccCCCCChHH
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDG-----VDIKELDPMY 473 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg-----~~i~~~~~~~ 473 (644)
-++++++|-.|.+. .-.+||||++-|||..+|||+||||||||+++|.+-+.|++|+|.++. .|+-.++..+
T Consensus 6 LL~V~~lsk~Yg~~---~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEae 82 (258)
T COG4107 6 LLSVSGLSKLYGPG---KGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAE 82 (258)
T ss_pred ceeehhhhhhhCCC---cCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHH
Confidence 37889999999743 468999999999999999999999999999999999999999999976 4444555444
Q ss_pred H----hcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHH------HHHhhccchhhhhcCccccccCCCCCCC
Q psy5743 474 L----RSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAA------KEANAYGFVIDFKNGFDTIVGERGIMLS 543 (644)
Q Consensus 474 l----r~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~------~~a~l~~~i~~lp~Gl~T~ige~G~~LS 543 (644)
- |.--|+|.|+|. |-+.+.-....++ -|++...- -.+...+|+++..- ..+.|.+....+|
T Consensus 83 RR~L~RTeWG~VhQnP~-------DGLRm~VSAG~Ni-GERlma~G~RHYG~iR~~a~~WL~~VEI-~~~RiDD~PrtFS 153 (258)
T COG4107 83 RRRLLRTEWGFVHQNPR-------DGLRMQVSAGGNI-GERLMAIGARHYGNIRAEAQDWLEEVEI-DLDRIDDLPRTFS 153 (258)
T ss_pred HHHHhhhccceeecCcc-------ccceeeeccCCcc-chhHHhhhhhhhhhHHHHHHHHHHhccc-CcccccCcccccc
Confidence 3 445899999985 2222221110001 11111110 01112344444321 2356778889999
Q ss_pred hhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEEEeCCeEEEe
Q psy5743 544 GGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIR-KSNQICVLDKGKIVEI 620 (644)
Q Consensus 544 GGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~ 620 (644)
||.+||+.|||-|...|+++++||||-+||..-.+.+.+.++.+.. +-.+|+|||++...+ -||+.+||++|+++|+
T Consensus 154 GGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve~ 233 (258)
T COG4107 154 GGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVES 233 (258)
T ss_pred hHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEecc
Confidence 9999999999999999999999999999999999999999987654 569999999999885 4999999999999999
Q ss_pred cChhHHhcCCCcHHHHHHH
Q psy5743 621 GSYAHLIKNPNSMFNKLMK 639 (644)
Q Consensus 621 Gt~~eLl~~~~~~y~~l~~ 639 (644)
|--+..+..+.-.|.++.-
T Consensus 234 GLTDrvLDDP~hPYTQLLV 252 (258)
T COG4107 234 GLTDRVLDDPHHPYTQLLV 252 (258)
T ss_pred ccccccccCCCCchHHHHH
Confidence 9999999887788888753
No 369
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.97 E-value=3.9e-31 Score=263.70 Aligned_cols=192 Identities=24% Similarity=0.310 Sum_probs=127.3
Q ss_pred CCccccceeEEEeCCCEEEEECCCCCcHHHHH-HHHhccCCCCCcEEEEC-C------ccCCCCC-h--HHHhc-ceEEE
Q psy5743 414 DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLA-MLLLRLYDPQNGKILID-G------VDIKELD-P--MYLRS-QIGSV 481 (644)
Q Consensus 414 ~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl-~lL~g~~~p~~G~I~id-g------~~i~~~~-~--~~lr~-~i~~V 481 (644)
+.++|+|+||+|++||++||+|+||||||||+ ..+. .+|++.+. + ..+..+. + ...+. ..++.
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIY-----AEGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIA 81 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHH-----HHHHHHHhhcccchhhhhhcccCccccccccCCCceEE
Confidence 45799999999999999999999999999996 3332 13433221 0 1111110 1 11111 23344
Q ss_pred ecCCC-CCc-----ccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccc-cccCCCCCCChhHHHHHHHHH
Q psy5743 482 SQEPT-LFS-----GTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDT-IVGERGIMLSGGQKQRIAIAR 554 (644)
Q Consensus 482 ~Q~~~-Lf~-----gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T-~ige~G~~LSGGQkQRiaLAR 554 (644)
.|++. .++ +++.+...+...-....+.++..+.++.. |+.. ........||||||||++|||
T Consensus 82 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~~LSgG~~qrv~lar 150 (226)
T cd03270 82 IDQKTTSRNPRSTVGTVTEIYDYLRLLFARVGIRERLGFLVDV-----------GLGYLTLSRSAPTLSGGEAQRIRLAT 150 (226)
T ss_pred ecCCCCCCCCCccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHC-----------CCCcccccCccCcCCHHHHHHHHHHH
Confidence 44433 111 12222221110000000111112222222 3332 245667789999999999999
Q ss_pred HHccCC--CEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhhcCEEEEE------eCCeEEEec
Q psy5743 555 ALIKKS--KILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIRKSNQICVL------DKGKIVEIG 621 (644)
Q Consensus 555 All~~p--~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~~aD~Iivl------~~G~ive~G 621 (644)
|++++| +++||||||++||+.+...+.+.|.++. .+.|+|+|||+++.+..||+|++| ++|+|+++|
T Consensus 151 al~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 151 QIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIRAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred HHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHHHhCCEEEEeCCCccccCCEEEecC
Confidence 999998 5999999999999999999999998864 478999999999999999999999 999999987
No 370
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.97 E-value=4.1e-31 Score=266.27 Aligned_cols=194 Identities=29% Similarity=0.417 Sum_probs=145.3
Q ss_pred ccccceeEEEeCCCEEEEECCCCCcHHHHHHHHh-----c-cC----CCCCc-----------EEEECCccCCCCChHH-
Q psy5743 416 VILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLL-----R-LY----DPQNG-----------KILIDGVDIKELDPMY- 473 (644)
Q Consensus 416 ~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~-----g-~~----~p~~G-----------~I~idg~~i~~~~~~~- 473 (644)
..|+|+|++||.|..++|+|+||||||||++.++ + +. .|..+ -|.||..+|..-....
T Consensus 9 ~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~ 88 (261)
T cd03271 9 NNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNP 88 (261)
T ss_pred hcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcH
Confidence 3599999999999999999999999999998663 1 11 13222 4677777765432211
Q ss_pred ---------Hhc----------------ceEEEecCCC-CCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhh
Q psy5743 474 ---------LRS----------------QIGSVSQEPT-LFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDF 527 (644)
Q Consensus 474 ---------lr~----------------~i~~V~Q~~~-Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~l 527 (644)
+|+ .+.|..++.. +.+-|+.||+.|.... ...++..++++..
T Consensus 89 ~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~---~~~~~~~~~L~~v--------- 156 (261)
T cd03271 89 ATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENI---PKIARKLQTLCDV--------- 156 (261)
T ss_pred HHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhh---hhHHHHHHHHHHc---------
Confidence 111 1334444444 3455888888776431 1122333333333
Q ss_pred hcCccc-cccCCCCCCChhHHHHHHHHHHHccC---CCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchH
Q psy5743 528 KNGFDT-IVGERGIMLSGGQKQRIAIARALIKK---SKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLST 602 (644)
Q Consensus 528 p~Gl~T-~ige~G~~LSGGQkQRiaLARAll~~---p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~ 602 (644)
|++. ..++....|||||+||++|||||.++ |+++||||||++||+++...+.+.|.++. ++.|+|+|+|+++.
T Consensus 157 --gL~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~ 234 (261)
T cd03271 157 --GLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDV 234 (261)
T ss_pred --CCchhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 4444 36788899999999999999999996 79999999999999999999999998875 47899999999999
Q ss_pred HhhcCEEEEE------eCCeEEEecCh
Q psy5743 603 IRKSNQICVL------DKGKIVEIGSY 623 (644)
Q Consensus 603 i~~aD~Iivl------~~G~ive~Gt~ 623 (644)
++.||+|++| ++|+|+++|++
T Consensus 235 i~~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 235 IKCADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred HHhCCEEEEecCCcCCCCCEEEEeCCC
Confidence 9999999999 89999999974
No 371
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.97 E-value=1.6e-30 Score=253.31 Aligned_cols=164 Identities=20% Similarity=0.324 Sum_probs=135.3
Q ss_pred cceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCC---------CcEEEECCccCCCCChHHHhcceEEEecCCCCCc
Q psy5743 419 NDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQ---------NGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFS 489 (644)
Q Consensus 419 ~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~---------~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~ 489 (644)
+++++++++| +++|+||||||||||+++|.|+.+|. .|++.++|.++... ..++++++|+|+|..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~vfq~~~~~- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKP---ANFAEVTLTFDNSDGR- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCC---CceEEEEEEEEcCCCc-
Confidence 5789999999 99999999999999999999998665 34788888877542 2467899999999988
Q ss_pred ccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHc----cCCCEEEe
Q psy5743 490 GTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALI----KKSKILLL 565 (644)
Q Consensus 490 gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll----~~p~IliL 565 (644)
|+. ...+++.++++. ++-.+ .....||||||||++||||+. ++|++++|
T Consensus 89 --------~~~-----~~~~~~~~~l~~----------~~~~~----~~~~~LS~G~kqrl~la~~l~~~~~~~~~illl 141 (197)
T cd03278 89 --------YSI-----ISQGDVSEIIEA----------PGKKV----QRLSLLSGGEKALTALALLFAIFRVRPSPFCVL 141 (197)
T ss_pred --------eeE-----EehhhHHHHHhC----------CCccc----cchhhcCHHHHHHHHHHHHHHHhccCCCCEEEE
Confidence 331 124455555555 11123 334579999999999999985 57799999
Q ss_pred ecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeC
Q psy5743 566 DEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDK 614 (644)
Q Consensus 566 DEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~ 614 (644)
||||++||+++...+.+.|+++.++.|+|+|||+++.+..||+++.|..
T Consensus 142 DEP~~~LD~~~~~~l~~~l~~~~~~~tiIiitH~~~~~~~~d~v~~~~~ 190 (197)
T cd03278 142 DEVDAALDDANVERFARLLKEFSKETQFIVITHRKGTMEAADRLYGVTM 190 (197)
T ss_pred eCCcccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHhhcceEEEEEe
Confidence 9999999999999999999998778999999999999999999999864
No 372
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=1.9e-30 Score=251.24 Aligned_cols=206 Identities=24% Similarity=0.338 Sum_probs=159.1
Q ss_pred ccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEe-cCCCCC-----c
Q psy5743 416 VILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVS-QEPTLF-----S 489 (644)
Q Consensus 416 ~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~-Q~~~Lf-----~ 489 (644)
++.+||||+||||+.++.+|++|+||||++|+|.|+..|++|.|.++|.+--. +.+++-+++++|+ |...+. .
T Consensus 38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~-~~~~~~~~~~~v~gqk~ql~Wdlp~~ 116 (325)
T COG4586 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFR-RREEYLRSIGLVMGQKLQLWWDLPAL 116 (325)
T ss_pred hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcch-hHHHHHHHHHHHhhhhheeeeechhh
Confidence 57899999999999999999999999999999999999999999999988766 4445555666554 332211 1
Q ss_pred ccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeeccc
Q psy5743 490 GTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEAT 569 (644)
Q Consensus 490 gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaT 569 (644)
.|++=|=..- ++.+++..+-.. ++++-| +++..+-..-..||=|||-|.-||-||+++|+||+|||||
T Consensus 117 ds~~v~~~Iy-----~Ipd~~F~~r~~-----~l~eiL--dl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpT 184 (325)
T COG4586 117 DSLEVLKLIY-----EIPDDEFAERLD-----FLTEIL--DLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPT 184 (325)
T ss_pred hhHHHHHHHH-----hCCHHHHHHHHH-----HHHHHh--cchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCc
Confidence 2222221111 133444332211 112212 4566666777899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHc--CCceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhHHhcCCCcHHH
Q psy5743 570 SALDAENEYLVQSAIEKLI--EGKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHLIKNPNSMFN 635 (644)
Q Consensus 570 SaLD~~~e~~i~~~l~~~~--~~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~eLl~~~~~~y~ 635 (644)
=+||......|.+.+++.. .+.||++.||.++-+ .-||||+.|++|+++..||.++|.+. -|.|.
T Consensus 185 vgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l~~l~~~-f~~~k 252 (325)
T COG4586 185 VGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQ-FGPYK 252 (325)
T ss_pred cCcchhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeecccHHHHHHH-hCCce
Confidence 9999999999999997753 478999999999987 66999999999999999999999764 34343
No 373
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.96 E-value=4.8e-29 Score=252.14 Aligned_cols=192 Identities=25% Similarity=0.310 Sum_probs=141.2
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhcc----------------CCCCCc-----
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRL----------------YDPQNG----- 457 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~----------------~~p~~G----- 457 (644)
.|+++|. .+|. +..++.+++ |++++|+||||||||||+++|.++ ..+.+|
T Consensus 3 ~i~~~nf-ksy~---~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~ 73 (243)
T cd03272 3 QVIIQGF-KSYK---DQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMS 73 (243)
T ss_pred EEEEeCc-cCcc---cCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCce
Confidence 3566654 1253 235677776 899999999999999999999844 444455
Q ss_pred ---EEEECCccCCCC---ChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchh--hhhc
Q psy5743 458 ---KILIDGVDIKEL---DPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVI--DFKN 529 (644)
Q Consensus 458 ---~I~idg~~i~~~---~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~--~lp~ 529 (644)
+|.+++.+-... +...+++++++++|++.++. . ..+.++++.+++..++...-. .+|+
T Consensus 74 ~~v~i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~l~~-----------~---~~t~~ei~~~l~~~gl~~~~~~~~~~q 139 (243)
T cd03272 74 AYVEIIFDNSDNRFPIDKEEVRLRRTIGLKKDEYFLDK-----------K---NVTKNDVMNLLESAGFSRSNPYYIVPQ 139 (243)
T ss_pred EEEEEEEEcCCCccCCCCCEEEEEEEEECCCCEEEECC-----------e---EcCHHHHHHHHHHcCCCCCCCcEEEEc
Confidence 555555322111 12235566777777665533 1 256788888888877654211 1233
Q ss_pred Ccc-------ccccCCCCCCChhHHHHHHHHHHHc----cCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEcc
Q psy5743 530 GFD-------TIVGERGIMLSGGQKQRIAIARALI----KKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAH 598 (644)
Q Consensus 530 Gl~-------T~ige~G~~LSGGQkQRiaLARAll----~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaH 598 (644)
|.. ....+.+..||||||||++||||++ ++|+++||||||++||+.+.+.+.+.|.++.++.|+|+++|
T Consensus 140 g~i~~l~~l~~~~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h 219 (243)
T cd03272 140 GKINSLTNMKQDEQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTTF 219 (243)
T ss_pred CchHHhhhccccccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 432 2345788899999999999999996 46899999999999999999999999999877889999999
Q ss_pred CchHHhhcCEEEEEe
Q psy5743 599 RLSTIRKSNQICVLD 613 (644)
Q Consensus 599 rl~~i~~aD~Iivl~ 613 (644)
+.+..+.||+|++|+
T Consensus 220 ~~~~~~~~d~i~~l~ 234 (243)
T cd03272 220 RPELLEVADKFYGVK 234 (243)
T ss_pred CHHHHhhCCEEEEEE
Confidence 999999999999985
No 374
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=99.96 E-value=1.4e-25 Score=227.71 Aligned_cols=273 Identities=26% Similarity=0.442 Sum_probs=239.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 81 TGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVYLMNVSAQSITKKLRERL 160 (644)
Q Consensus 81 ~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~ 160 (644)
+.+++++++..++.++.|++++.++|.+...... .......+.++++++.++.........+...+.+.++..++|.++
T Consensus 2 ~l~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 80 (275)
T PF00664_consen 2 FLAILLSILSGLLSLLFPLLLGQIIDSLSSGNSD-NNSSLISLAFLLIAIFLLIFLFSYIYFYLSSRISQRIRKDLRKRL 80 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTSC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667778888888899999999999986554332 122333333344444455555666666778899999999999999
Q ss_pred HHHHHcCChhhhhccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 161 FGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLALISLIIVPPVAGLAIV 240 (644)
Q Consensus 161 ~~~ll~~~~~~~~~~~~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~~~l~~~~~~~ 240 (644)
++|+++.|.++|+++++|++++|+++|++.+++.+...+...+.+++.+++.++++++++|.++++.+++.+++.++...
T Consensus 81 ~~~~~~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~~~~~~~~~~ 160 (275)
T PF00664_consen 81 FEKLLRLPYSYFDKNSSGELLSRITNDIEQIENFLSSSLFQIISSIISIIFSLILLFFISWKLALILLIILPLLFLISFI 160 (275)
T ss_dssp HHHHHHSHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhhhcccccccccccccccccccccccccccccccchhhhhhhcccccccccccccchhhhhhHhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 241 YGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAKGVFFGFTGLSGNAIIL 320 (644)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (644)
+.|+.++..++..+..++..+.+.|.++|+++||+||+|+++.++|.+..++..+...+.............++..+..+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (275)
T PF00664_consen 161 FSKKIRKLSKKYQEANSELNSFLSESLSGIRTIKAFGAEDYFLERFNKALEKYRKASFKYAKIQALLSSISQFISYLSIV 240 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccccccccccccccccccccccccchhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999888888888888888888888
Q ss_pred HHHHHHHHH-HHcCCcCHhHHHHHHHHHHHHHHHH
Q psy5743 321 SVLYYGGVM-VSYETITVGNLSSFLLYAAYIGISI 354 (644)
Q Consensus 321 ~vl~~g~~~-v~~g~~t~g~l~a~~~~~~~~~~~l 354 (644)
+++++|+++ +.+|.+++|.++++..+...+..|+
T Consensus 241 ~~~~~g~~~~~~~g~~s~g~~~~~~~~~~~~~~pl 275 (275)
T PF00664_consen 241 LILIFGAYLSVINGQISIGTLVAFLSLSSQLINPL 275 (275)
T ss_dssp HHHHHHHHH-HCTTSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHhhC
Confidence 999999999 9999999999999999999998885
No 375
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.96 E-value=2.8e-29 Score=248.37 Aligned_cols=192 Identities=18% Similarity=0.188 Sum_probs=147.7
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEe-CCCEEEEECCCCCcHHHHHHHHhc-cCCCCCcEEEECCccCCCCChHHHhc
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQ-SGSMTSVIGSSGSGKSTLAMLLLR-LYDPQNGKILIDGVDIKELDPMYLRS 476 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~-~G~~vaIvG~SGsGKSTLl~lL~g-~~~p~~G~I~idg~~i~~~~~~~lr~ 476 (644)
.|+++|+. +|.+. .+|+|+.. +|++++|+||||||||||+++|.+ +|.+..+....+ .....+.....+.
T Consensus 5 ~i~l~nf~-~y~~~------~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~-~~~~~~~~~~~~~ 76 (213)
T cd03279 5 KLELKNFG-PFREE------QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQE-NLRSVFAPGEDTA 76 (213)
T ss_pred EEEEECCc-CcCCc------eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccch-hHHHHhcCCCccE
Confidence 58999998 77532 46777654 599999999999999999999994 666776766654 3334555566677
Q ss_pred ceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcC-ccccccCCCCCCChhHHHHHHHHHH
Q psy5743 477 QIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNG-FDTIVGERGIMLSGGQKQRIAIARA 555 (644)
Q Consensus 477 ~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G-l~T~ige~G~~LSGGQkQRiaLARA 555 (644)
.|++++|++.- ...++.++. .+.++..+... ++.| +++.+...+.+||||||||++||||
T Consensus 77 ~v~~~f~~~~~----~~~~~r~~g-----l~~~~~~~~~~----------l~~g~l~~~l~~~~~~lS~G~~~r~~la~a 137 (213)
T cd03279 77 EVSFTFQLGGK----KYRVERSRG-----LDYDQFTRIVL----------LPQGEFDRFLARPVSTLSGGETFLASLSLA 137 (213)
T ss_pred EEEEEEEECCe----EEEEEEecC-----CCHHHHHHhhh----------hhhcchHHHhcCCccccCHHHHHHHHHHHH
Confidence 89999999843 223333331 45555544331 2223 5666778888999999999999999
Q ss_pred Hcc----------CCCEEEeecccCCCCHHHHHHHHHHHHHHcC-CceEEEEccCchHHhh-cCEEEEEeCCeE
Q psy5743 556 LIK----------KSKILLLDEATSALDAENEYLVQSAIEKLIE-GKTVLTIAHRLSTIRK-SNQICVLDKGKI 617 (644)
Q Consensus 556 ll~----------~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~-~~TvI~IaHrl~~i~~-aD~Iivl~~G~i 617 (644)
+.. +|+++||||||++||+.+...+.+.+.++.+ ++|+|+|||+++.+.. ||+|++|++|.+
T Consensus 138 l~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~~~~i~~~~~~~~ 211 (213)
T cd03279 138 LALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERIPQRLEVIKTPGG 211 (213)
T ss_pred HHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhhCcEEEEEecCCC
Confidence 974 6799999999999999999999999988765 7899999999998754 799999999864
No 376
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=7.1e-29 Score=223.66 Aligned_cols=203 Identities=29% Similarity=0.420 Sum_probs=147.9
Q ss_pred EEEEEEEEEcC----CCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECC----ccCCCCCh
Q psy5743 400 IDFNNIRFSYP----SRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDG----VDIKELDP 471 (644)
Q Consensus 400 I~~~~vsf~Y~----~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg----~~i~~~~~ 471 (644)
+.++|++.++. +.-.-|+++|+||+++.||++++-||||||||||++.|-+-|.|++|+|.+.- .|+-...+
T Consensus 5 l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~p 84 (235)
T COG4778 5 LNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEP 84 (235)
T ss_pred eeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccCh
Confidence 67777755542 11234799999999999999999999999999999999999999999999842 45555555
Q ss_pred HHH----hcceEEEecCCCCCc-----ccHHHH-HhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCC
Q psy5743 472 MYL----RSQIGSVSQEPTLFS-----GTIYEN-ILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIM 541 (644)
Q Consensus 472 ~~l----r~~i~~V~Q~~~Lf~-----gTIreN-I~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~ 541 (644)
.+. |+.||||+|--.... +-+.|- +..|-|. +...++....+...++-+.+=+|| ...
T Consensus 85 r~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~~--~~a~~~a~~Ll~rLnlperLW~La----------PaT 152 (235)
T COG4778 85 REVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPR--EVARAKAADLLTRLNLPERLWSLA----------PAT 152 (235)
T ss_pred HHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCCH--HHHHHHHHHHHHHcCCCHHHhcCC----------Ccc
Confidence 443 556999999532221 112232 2233221 011122222333344433333333 468
Q ss_pred CChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHH-cCCceEEEEccCchHH-hhcCEEEEEeC
Q psy5743 542 LSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKL-IEGKTVLTIAHRLSTI-RKSNQICVLDK 614 (644)
Q Consensus 542 LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~-~~~~TvI~IaHrl~~i-~~aD~Iivl~~ 614 (644)
+|||++||+-|||++.-|-+||+|||||++||+.+.+.+.+.|.+. .++..+|=|=|+-+.- .-|||++.|..
T Consensus 153 FSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~~~~~~ 227 (235)
T COG4778 153 FSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDVSA 227 (235)
T ss_pred cCCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhheeeccc
Confidence 9999999999999999999999999999999999999999999775 4688999999998765 34899998854
No 377
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.95 E-value=1.2e-27 Score=242.74 Aligned_cols=185 Identities=17% Similarity=0.216 Sum_probs=142.1
Q ss_pred CCEEEEECCCCCcHHHHHHHHhccCCCC-CcEEEECCc-cCCCCC--hHHHhcceEEEecCCCC----------CcccHH
Q psy5743 428 GSMTSVIGSSGSGKSTLAMLLLRLYDPQ-NGKILIDGV-DIKELD--PMYLRSQIGSVSQEPTL----------FSGTIY 493 (644)
Q Consensus 428 G~~vaIvG~SGsGKSTLl~lL~g~~~p~-~G~I~idg~-~i~~~~--~~~lr~~i~~V~Q~~~L----------f~gTIr 493 (644)
..+++||||||||||||+++|.+++.|+ .|+++..|. |+-..+ ....+..+++++|++.. -.-||.
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~ 104 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT 104 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence 6799999999999999999999999886 568988887 442211 11234589999999632 145888
Q ss_pred HHHhcCCCC-----CCCCCHHHHHHHHHHHhhc----cc------hhhhhcCccccccCCCCCCChhHHHHHHHHHHHc-
Q psy5743 494 ENILYGVND-----SSSVTKSDIIHAAKEANAY----GF------VIDFKNGFDTIVGERGIMLSGGQKQRIAIARALI- 557 (644)
Q Consensus 494 eNI~~g~~~-----~~~~~~~~i~~a~~~a~l~----~~------i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll- 557 (644)
+||..+... ......+++.++++.+++. .+ |.++-+. ..........||||||||++||||+.
T Consensus 105 r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~-~~~~~~~~~~lS~G~~qr~~la~al~~ 183 (251)
T cd03273 105 RQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNM-GGVWKESLTELSGGQRSLVALSLILAL 183 (251)
T ss_pred EEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHh-HHhhcccccccCHHHHHHHHHHHHHHH
Confidence 888765321 1124567888889988874 11 1111000 12234556789999999999999997
Q ss_pred ---cCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEe
Q psy5743 558 ---KKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLD 613 (644)
Q Consensus 558 ---~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~ 613 (644)
++|++++|||||++||+++...+.+.|.++.++.|+|+|||+.+.+..||+|+-+.
T Consensus 184 ~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~~~~~~~~d~v~~~~ 242 (251)
T cd03273 184 LLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLKEGMFNNANVLFRTR 242 (251)
T ss_pred hhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 68899999999999999999999999999888899999999999999999999874
No 378
>KOG0059|consensus
Probab=99.95 E-value=2.9e-25 Score=260.61 Aligned_cols=217 Identities=24% Similarity=0.349 Sum_probs=185.6
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCC-ChHHHhc
Q psy5743 398 GEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKEL-DPMYLRS 476 (644)
Q Consensus 398 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~-~~~~lr~ 476 (644)
..+..+|++..|+... . +.+++|+.|++||+.++-|++||||||.+|++.|..+|++|++.++|.++..- +.+..|+
T Consensus 563 ~~~~~~~L~k~y~~~~-~-Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~ 640 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKD-G-AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRK 640 (885)
T ss_pred ceEEEcceeeeecchh-h-hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhh
Confidence 3588999999998642 2 89999999999999999999999999999999999999999999999999764 5556999
Q ss_pred ceEEEecCCCCCc-ccHHHHHhcCCCCCCCCCHHH----HHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHH
Q psy5743 477 QIGSVSQEPTLFS-GTIYENILYGVNDSSSVTKSD----IIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIA 551 (644)
Q Consensus 477 ~i~~V~Q~~~Lf~-gTIreNI~~g~~~~~~~~~~~----i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRia 551 (644)
++||+||++.|+. -|.||.+.+..-- ......+ +.+.++..++.+. .+++ -.++|||+|.|++
T Consensus 641 ~iGyCPQ~d~l~~~lT~rEhL~~~arl-rG~~~~di~~~v~~ll~~~~L~~~-------~~~~----~~~ySgG~kRkLs 708 (885)
T KOG0059|consen 641 QLGYCPQFDALWEELTGREHLEFYARL-RGLPRSDIGSAIEKLLRLVGLGPY-------ANKQ----VRTYSGGNKRRLS 708 (885)
T ss_pred hcccCCchhhhhhhccHHHHHHHHHHH-cCCChhHHHHHHHHHHHHcCChhh-------hccc----hhhCCCcchhhHH
Confidence 9999999999997 4999999875421 1122222 4555666665443 4444 3589999999999
Q ss_pred HHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCc-eEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHHhc
Q psy5743 552 IARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGK-TVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHLIK 628 (644)
Q Consensus 552 LARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~-TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eLl~ 628 (644)
+|-|++.+|++++|||||+++|+.+++.+.+.|.+..++. .+|+.||.++... -|||+-.|-+|++..-|+.++|-.
T Consensus 709 ~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~LKs 787 (885)
T KOG0059|consen 709 FAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQELKS 787 (885)
T ss_pred HHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHHHh
Confidence 9999999999999999999999999999999999987754 9999999999985 499999999999999999999953
No 379
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.94 E-value=3.1e-27 Score=231.67 Aligned_cols=162 Identities=24% Similarity=0.284 Sum_probs=130.6
Q ss_pred eEEEeCCCEEEEECCCCCcHHHHHHHHh----ccCCCCCcEEEECCccCCCCChHHHhcceEEEecCC-----CCCcc-c
Q psy5743 422 SLKIQSGSMTSVIGSSGSGKSTLAMLLL----RLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEP-----TLFSG-T 491 (644)
Q Consensus 422 sl~i~~G~~vaIvG~SGsGKSTLl~lL~----g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~-----~Lf~g-T 491 (644)
++++.+| +++|+||||||||||++.|. |...|.+|.+..+...+ .....+..+++++|++ .++.. |
T Consensus 17 ~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i---~~~~~~~~v~~~f~~~~~~~~~v~r~~~ 92 (204)
T cd03240 17 EIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLI---REGEVRAQVKLAFENANGKKYTITRSLA 92 (204)
T ss_pred EEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHH---hCCCCcEEEEEEEEeCCCCEEEEEEEhh
Confidence 3556677 99999999999999999994 99999888776222222 2234566899999998 34332 9
Q ss_pred HHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHH------HHHHHHHccCCCEEEe
Q psy5743 492 IYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQR------IAIARALIKKSKILLL 565 (644)
Q Consensus 492 IreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQR------iaLARAll~~p~IliL 565 (644)
+.||+.++. .+++.+.+ .+....|||||+|| ++||||+..+|++++|
T Consensus 93 ~~~~~~~~~-------~~~~~~~~--------------------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illl 145 (204)
T cd03240 93 ILENVIFCH-------QGESNWPL--------------------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILAL 145 (204)
T ss_pred Hhhceeeec-------hHHHHHHH--------------------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEE
Confidence 999998752 23332222 45567899999996 7999999999999999
Q ss_pred ecccCCCCHHHHH-HHHHHHHHHcC--CceEEEEccCchHHhhcCEEEEEeC
Q psy5743 566 DEATSALDAENEY-LVQSAIEKLIE--GKTVLTIAHRLSTIRKSNQICVLDK 614 (644)
Q Consensus 566 DEaTSaLD~~~e~-~i~~~l~~~~~--~~TvI~IaHrl~~i~~aD~Iivl~~ 614 (644)
||||++||+++.. .+.+.|.++.+ ++|+|+|||+++.+..||+|++|++
T Consensus 146 DEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~~d~i~~l~~ 197 (204)
T cd03240 146 DEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDAADHIYRVEK 197 (204)
T ss_pred cCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhhCCEEEEEee
Confidence 9999999999998 99999988765 6899999999999999999999965
No 380
>KOG0927|consensus
Probab=99.94 E-value=1.7e-27 Score=249.88 Aligned_cols=199 Identities=25% Similarity=0.345 Sum_probs=168.5
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcc
Q psy5743 398 GEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQ 477 (644)
Q Consensus 398 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~ 477 (644)
.-|.++||+|.|+++ +.+++++||-|.+++.||+|||+|+|||||+|++.|.+.|+.|.|.-.-+. .
T Consensus 388 pvi~~~nv~F~y~~~--~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~-----------~ 454 (614)
T KOG0927|consen 388 PVIMVQNVSFGYSDN--PMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHN-----------K 454 (614)
T ss_pred CeEEEeccccCCCCc--chhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccc-----------c
Confidence 359999999999863 489999999999999999999999999999999999999999999865533 3
Q ss_pred eEEEec---CCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHH
Q psy5743 478 IGSVSQ---EPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIAR 554 (644)
Q Consensus 478 i~~V~Q---~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLAR 554 (644)
+++-.| +..-++.|.-|++.---++ .-..+++...+...|+.......|. .+||+|||.||+.||
T Consensus 455 ~~~y~Qh~~e~ldl~~s~le~~~~~~~~--~~~~e~~r~ilgrfgLtgd~q~~p~----------~~LS~Gqr~rVlFa~ 522 (614)
T KOG0927|consen 455 LPRYNQHLAEQLDLDKSSLEFMMPKFPD--EKELEEMRSILGRFGLTGDAQVVPM----------SQLSDGQRRRVLFAR 522 (614)
T ss_pred chhhhhhhHhhcCcchhHHHHHHHhccc--cchHHHHHHHHHHhCCCccccccch----------hhcccccchhHHHHH
Confidence 444444 3446677888888744342 2457788889999999877665554 479999999999999
Q ss_pred HHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhh-cCEEEEEeCCeEEE-ecCh
Q psy5743 555 ALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRK-SNQICVLDKGKIVE-IGSY 623 (644)
Q Consensus 555 All~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~-aD~Iivl~~G~ive-~Gt~ 623 (644)
..+++|.||+|||||++||.++-....++|.+. +-+||+|+|+...|.+ |++|.+.+||++.. .|.+
T Consensus 523 l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~--~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i 591 (614)
T KOG0927|consen 523 LAVKQPHLLLLDEPTNHLDIETIDALAEAINEF--PGGVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDI 591 (614)
T ss_pred HHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc--CCceeeeechhhHHHHHHHHhHhhccCceeecCccH
Confidence 999999999999999999999999999999987 6799999999999965 89999999998863 3443
No 381
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.94 E-value=1e-26 Score=269.52 Aligned_cols=111 Identities=32% Similarity=0.506 Sum_probs=98.2
Q ss_pred Cccc-cccCCCCCCChhHHHHHHHHHHHccCC---CEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHh
Q psy5743 530 GFDT-IVGERGIMLSGGQKQRIAIARALIKKS---KILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIR 604 (644)
Q Consensus 530 Gl~T-~ige~G~~LSGGQkQRiaLARAll~~p---~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~ 604 (644)
|++. ..+.....||||||||++|||||.++| +++||||||++||.++...+.+.|.++. +++|+|+|+|+++.++
T Consensus 818 gL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~ 897 (943)
T PRK00349 818 GLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIK 897 (943)
T ss_pred CCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH
Confidence 5554 468888999999999999999999999 9999999999999999999999998875 4789999999999999
Q ss_pred hcCEEEEE------eCCeEEEecChhHHhcCCCcHHHHHHHh
Q psy5743 605 KSNQICVL------DKGKIVEIGSYAHLIKNPNSMFNKLMKY 640 (644)
Q Consensus 605 ~aD~Iivl------~~G~ive~Gt~~eLl~~~~~~y~~l~~~ 640 (644)
.||+|++| ++|+|++.|+++++.+.+.+.-.+.++.
T Consensus 898 ~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~~~~s~t~~~l~~ 939 (943)
T PRK00349 898 TADWIIDLGPEGGDGGGEIVATGTPEEVAKVEASYTGRYLKP 939 (943)
T ss_pred hCCEEEEecCCcCCCCCEEEEeCCHHHHHhCcccHHHHHHHH
Confidence 99999999 7999999999999997655555555543
No 382
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.94 E-value=1.1e-27 Score=216.90 Aligned_cols=209 Identities=22% Similarity=0.382 Sum_probs=177.7
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
++++||+..- -|-.+|.++..||.+=+|||+|||||||+..|.|+. |-+|+|.++|.|++.++..++.++=+
T Consensus 4 ~qln~v~~~t-------RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~eLArhRA 75 (248)
T COG4138 4 MQLNDVAEST-------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRA 75 (248)
T ss_pred eeeccccccc-------cccccccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHhHHHHHHH
Confidence 5667775421 266789999999999999999999999999999998 78899999999999999999999999
Q ss_pred EEecCC-CCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHcc
Q psy5743 480 SVSQEP-TLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIK 558 (644)
Q Consensus 480 ~V~Q~~-~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~ 558 (644)
|.+|+. ..|...+..-+++..|+ +.--+++.+++++.+++ -.+|..-..|||||.||+-||-..++
T Consensus 76 YLsQqq~p~f~mpV~~YL~L~qP~--~~~a~~i~~i~~~L~l~-----------DKL~Rs~~qLSGGEWQRVRLAav~LQ 142 (248)
T COG4138 76 YLSQQQTPPFAMPVWHYLTLHQPD--KTRTELLNDVAGALALD-----------DKLGRSTNQLSGGEWQRVRLAAVVLQ 142 (248)
T ss_pred HHhhccCCcchhhhhhhhhhcCch--HHHHHHHHHHHhhhccc-----------chhhhhhhhcCcccceeeEEeEEEEE
Confidence 998754 58999999999999875 22334555556655544 44566678999999999999998874
Q ss_pred -----C--CCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCch-HHhhcCEEEEEeCCeEEEecChhHHhcC
Q psy5743 559 -----K--SKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLS-TIRKSNQICVLDKGKIVEIGSYAHLIKN 629 (644)
Q Consensus 559 -----~--p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~-~i~~aD~Iivl~~G~ive~Gt~~eLl~~ 629 (644)
| .++|++|||-+.||...+..+...|.++. .+.|+|+-.|++. |+++||+++.+..|++..+|..+|.+..
T Consensus 143 v~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVlt~ 222 (248)
T COG4138 143 ITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLTP 222 (248)
T ss_pred ecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhcCh
Confidence 3 37999999999999999988888887765 5899999999986 8999999999999999999999999853
No 383
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.94 E-value=5.9e-26 Score=273.25 Aligned_cols=215 Identities=23% Similarity=0.313 Sum_probs=157.1
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHH---------HHhccCCCCCc--------EEEE
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAM---------LLLRLYDPQNG--------KILI 461 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~---------lL~g~~~p~~G--------~I~i 461 (644)
.++++|++. ..|+|+|++|++||+++|+|+||||||||++ .|.|...|..+ -|.|
T Consensus 600 ~L~l~~~~~--------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~i 671 (1809)
T PRK00635 600 TLTLSKATK--------HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHI 671 (1809)
T ss_pred eEEEecccc--------CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEe
Confidence 588888852 2699999999999999999999999999999 55665433211 2456
Q ss_pred CCccCCCCCh----------HHHh---------cceE-----EEecC------------------C--------------
Q psy5743 462 DGVDIKELDP----------MYLR---------SQIG-----SVSQE------------------P-------------- 485 (644)
Q Consensus 462 dg~~i~~~~~----------~~lr---------~~i~-----~V~Q~------------------~-------------- 485 (644)
|-.++..-.. +++| +..+ +.+|. |
T Consensus 672 dQspigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy 751 (1809)
T PRK00635 672 TRDLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRF 751 (1809)
T ss_pred cCCCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCccc
Confidence 6665543221 1344 1111 12221 1
Q ss_pred ------CCCc-ccHHHHHhcCCCCCCC--CCHHHHHHHHHHHhhccchhhhhcCcccc-ccCCCCCCChhHHHHHHHHHH
Q psy5743 486 ------TLFS-GTIYENILYGVNDSSS--VTKSDIIHAAKEANAYGFVIDFKNGFDTI-VGERGIMLSGGQKQRIAIARA 555 (644)
Q Consensus 486 ------~Lf~-gTIreNI~~g~~~~~~--~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~-ige~G~~LSGGQkQRiaLARA 555 (644)
..+. -||.||+.++..+... .+.+++.+.++ .++. .|++.. .++...+||||||||++||||
T Consensus 752 ~~e~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l~------~L~~--vGL~~l~l~q~~~tLSGGE~QRV~LAra 823 (1809)
T PRK00635 752 LPQVLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHEKIH------ALCS--LGLDYLPLGRPLSSLSGGEIQRLKLAYE 823 (1809)
T ss_pred CHHHHhhccCCCCHHHHHHcCHHHHHHcccChHHHHHHHH------HHHH--cCCcchhhcCccccCCHHHHHHHHHHHH
Confidence 1222 3799999887432100 11233333332 1222 266664 688889999999999999999
Q ss_pred Hc---cCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhhcCEEEEEe------CCeEEEecChhH
Q psy5743 556 LI---KKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIRKSNQICVLD------KGKIVEIGSYAH 625 (644)
Q Consensus 556 ll---~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~~aD~Iivl~------~G~ive~Gt~~e 625 (644)
|. ++|++|||||||++||.++.+.+.+.|.++. +++|+|+|+|+++.++.||+|++|+ +|++++.|++++
T Consensus 824 L~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~~aDrVi~L~p~gg~~~G~iv~~Gtpee 903 (1809)
T PRK00635 824 LLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVKVADYVLELGPEGGNLGGYLLASCSPEE 903 (1809)
T ss_pred HhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEccCCCCCCCEEEEeCCHHH
Confidence 98 6999999999999999999999999998875 4789999999999999999999996 799999999999
Q ss_pred HhcC
Q psy5743 626 LIKN 629 (644)
Q Consensus 626 Ll~~ 629 (644)
+...
T Consensus 904 l~~~ 907 (1809)
T PRK00635 904 LIHL 907 (1809)
T ss_pred HHhc
Confidence 9763
No 384
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.94 E-value=4e-27 Score=231.97 Aligned_cols=185 Identities=17% Similarity=0.251 Sum_probs=140.2
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHh-cc
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLR-SQ 477 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr-~~ 477 (644)
.|+++|.- +|. +..+++++++ ++++|+|||||||||++++|. +++|.+.. ..| ++
T Consensus 5 ~l~l~nfk-~~~---~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~----------~~~G~~~~-----~~~~~~ 60 (212)
T cd03274 5 KLVLENFK-SYA---GEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSML----------FVFGFRAS-----KMRQKK 60 (212)
T ss_pred EEEEECcc-cCC---CCeeeccCCC-----CeEEEECCCCCCHHHHHHHHH----------HHhccCHH-----Hhhhhh
Confidence 47788875 674 3468898887 899999999999999999997 33554432 233 57
Q ss_pred eEEEecCCCCCcc-cHHHHHhcCCCCCCCCCHHHH-----HHHHHH----HhhccchhhhhcCccccccCCCCCCChhHH
Q psy5743 478 IGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDI-----IHAAKE----ANAYGFVIDFKNGFDTIVGERGIMLSGGQK 547 (644)
Q Consensus 478 i~~V~Q~~~Lf~g-TIreNI~~g~~~~~~~~~~~i-----~~a~~~----a~l~~~i~~lp~Gl~T~ige~G~~LSGGQk 547 (644)
+++++|+..+++. |.++++.+.... ...+.+ ...... .+-...+.+||++.++.++ .||||||
T Consensus 61 i~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~----~lS~G~~ 133 (212)
T cd03274 61 LSDLIHNSAGHPNLDSCSVEVHFQEI---IDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNIS----NLSGGEK 133 (212)
T ss_pred HHHHhcCCCCCCCCceEEEEEEEEeC---CCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchh----hcCHHHH
Confidence 9999999887764 778877776421 111100 000000 0111234567888877654 7999999
Q ss_pred HHHHHHHHHc----cCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeC
Q psy5743 548 QRIAIARALI----KKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDK 614 (644)
Q Consensus 548 QRiaLARAll----~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~ 614 (644)
||++||||+. ++|++++|||||++||+.+...+.+.+.++.++.|+|+|||+.+..+.||+|++|..
T Consensus 134 ~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~~~~~~~~d~v~~~~~ 204 (212)
T cd03274 134 TLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLRNNMFELADRLVGIYK 204 (212)
T ss_pred HHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECcHHHHHhCCEEEEEEe
Confidence 9999999996 358999999999999999999999999998778899999999999999999999963
No 385
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.93 E-value=5.2e-26 Score=230.12 Aligned_cols=185 Identities=19% Similarity=0.201 Sum_probs=139.5
Q ss_pred CEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCcc-C------CCCChHHHhcceEEEecCCC--CCcccHHHHHh-c
Q psy5743 429 SMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVD-I------KELDPMYLRSQIGSVSQEPT--LFSGTIYENIL-Y 498 (644)
Q Consensus 429 ~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~-i------~~~~~~~lr~~i~~V~Q~~~--Lf~gTIreNI~-~ 498 (644)
..++|+||+|||||||+.+|.+.+.+..|++..++.+ + ...+.....-.+.+..|++. ++..+++++-. +
T Consensus 23 ~~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~ 102 (247)
T cd03275 23 RFTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGSSSY 102 (247)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCceEE
Confidence 3999999999999999999999998888888765421 1 11112233444555556533 45555554422 1
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhccchhh--hhcCccccccCCC---------CCCChhHHHHHHHHHHHcc----CCCEE
Q psy5743 499 GVNDSSSVTKSDIIHAAKEANAYGFVID--FKNGFDTIVGERG---------IMLSGGQKQRIAIARALIK----KSKIL 563 (644)
Q Consensus 499 g~~~~~~~~~~~i~~a~~~a~l~~~i~~--lp~Gl~T~ige~G---------~~LSGGQkQRiaLARAll~----~p~Il 563 (644)
..+ ....+.+++.+.++.++++.+... +|+|.-+.+.+.. ..||||||||++||||+.. +|+++
T Consensus 103 ~in-gk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~l 181 (247)
T cd03275 103 RIN-GKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFF 181 (247)
T ss_pred EEC-CEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEE
Confidence 211 124778888999999998644322 4566656665543 7899999999999999975 48999
Q ss_pred EeecccCCCCHHHHHHHHHHHHHHcC-CceEEEEccCchHHhhcCEEEEEeC
Q psy5743 564 LLDEATSALDAENEYLVQSAIEKLIE-GKTVLTIAHRLSTIRKSNQICVLDK 614 (644)
Q Consensus 564 iLDEaTSaLD~~~e~~i~~~l~~~~~-~~TvI~IaHrl~~i~~aD~Iivl~~ 614 (644)
||||||++||..+...+.+.|.++.+ +.|+|+|||+.+.++.||+|++|..
T Consensus 182 llDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~~~~d~i~~~~~ 233 (247)
T cd03275 182 VLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFFSKADALVGVYR 233 (247)
T ss_pred EEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHHhhCCeEEEEEe
Confidence 99999999999999999999998865 7899999999999999999999863
No 386
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.93 E-value=4.7e-25 Score=235.68 Aligned_cols=213 Identities=25% Similarity=0.398 Sum_probs=170.7
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChH-HHhcce
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPM-YLRSQI 478 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~-~lr~~i 478 (644)
++++|++.. ..++|+||++.+||+++|.|--|||+|=|+.+|.|..++.+|+|.+||+++.--++. ..+.-|
T Consensus 264 l~v~~l~~~-------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi 336 (500)
T COG1129 264 LEVRNLSGG-------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGI 336 (500)
T ss_pred EEEecCCCC-------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCC
Confidence 567777532 147899999999999999999999999999999999999999999999999888865 777789
Q ss_pred EEEecC----CCCCcccHHHHHhcCCCCCCCCCHH-HHHHHHHHHhhccchhhhh---cCccccccCCCCCCChhHHHHH
Q psy5743 479 GSVSQE----PTLFSGTIYENILYGVNDSSSVTKS-DIIHAAKEANAYGFVIDFK---NGFDTIVGERGIMLSGGQKQRI 550 (644)
Q Consensus 479 ~~V~Q~----~~Lf~gTIreNI~~g~~~~~~~~~~-~i~~a~~~a~l~~~i~~lp---~Gl~T~ige~G~~LSGGQkQRi 550 (644)
+|||-| ..+..-||++||++..-.. .... -+....+..-..+++.+|. .+.+.++ .+||||-+|++
T Consensus 337 ~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~--~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v----~~LSGGNQQKV 410 (500)
T COG1129 337 AYVPEDRKSEGLVLDMSIAENITLASLRR--FSRRGLIDRRKERALAERYIRRLRIKTPSPEQPI----GTLSGGNQQKV 410 (500)
T ss_pred EeCCcccccCcCcCCCcHHHheehHhhhh--hccccccChHHHHHHHHHHHHhcCcccCCccchh----hcCCchhhhhH
Confidence 999964 4466779999999872210 1100 2333444444445555542 2333444 57999999999
Q ss_pred HHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhH
Q psy5743 551 AIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAH 625 (644)
Q Consensus 551 aLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~e 625 (644)
.|||.|..+|+||||||||-++|.-+.+.|.+.|+++. +++++|+||-.+..+ ..||||+||.+|+|+..=+.++
T Consensus 411 vlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~~~~ 487 (500)
T COG1129 411 VLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGELDREE 487 (500)
T ss_pred HHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEEecccc
Confidence 99999999999999999999999999999999999875 579999999998876 5899999999999986444443
No 387
>KOG0065|consensus
Probab=99.93 E-value=7.6e-26 Score=259.39 Aligned_cols=214 Identities=26% Similarity=0.389 Sum_probs=174.5
Q ss_pred EEEEEEEEcCC-CCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCC--CCCcEEEECCccCCCCChHHHhcc
Q psy5743 401 DFNNIRFSYPS-RPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD--PQNGKILIDGVDIKELDPMYLRSQ 477 (644)
Q Consensus 401 ~~~~vsf~Y~~-~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~--p~~G~I~idg~~i~~~~~~~lr~~ 477 (644)
..+|+.|.-+. ...+.+|+||+=-++||..+|+.|+||||||||+++|+|=-. ..+|+|+|||.+..+ +..+|.
T Consensus 789 ~w~dl~~~~~~qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q---~tF~R~ 865 (1391)
T KOG0065|consen 789 YWVDLPYEMPIQGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ---ETFARV 865 (1391)
T ss_pred EEEeCCccccccccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch---hhhccc
Confidence 33444444321 134678999999999999999999999999999999999753 368999999998776 789999
Q ss_pred eEEEecCCC-CCcccHHHHHhcCCCC--CCCCCHHH----HHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHH
Q psy5743 478 IGSVSQEPT-LFSGTIYENILYGVND--SSSVTKSD----IIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRI 550 (644)
Q Consensus 478 i~~V~Q~~~-Lf~gTIreNI~~g~~~--~~~~~~~~----i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRi 550 (644)
+|||.|++. +=.-||||-+.|..-= ..+.+++| ++++.+..++.+. -|..||+-|.+||.+||.|+
T Consensus 866 ~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~-------~daiVG~~G~GLs~eQRKrL 938 (1391)
T KOG0065|consen 866 SGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEY-------ADALVGLPGSGLSTEQRKRL 938 (1391)
T ss_pred cceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhh-------hhhhccCCCCCCCHHHhcee
Confidence 999999765 6567999999876410 01345544 3445555554332 56789999999999999999
Q ss_pred HHHHHHccCC-CEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchH--HhhcCEEEEEeC-CeEEEecChh
Q psy5743 551 AIARALIKKS-KILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLST--IRKSNQICVLDK-GKIVEIGSYA 624 (644)
Q Consensus 551 aLARAll~~p-~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~--i~~aD~Iivl~~-G~ive~Gt~~ 624 (644)
.||=-|..|| .||+||||||+||+++...|++.++++. .|+|++.-=|++|. .+..|+++.|+. |+.|..|+..
T Consensus 939 TIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG 1017 (1391)
T KOG0065|consen 939 TIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLG 1017 (1391)
T ss_pred eEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcc
Confidence 9999999999 9999999999999999999999999875 69999999999996 588999999974 7999888744
No 388
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.93 E-value=8e-25 Score=253.42 Aligned_cols=97 Identities=32% Similarity=0.541 Sum_probs=89.3
Q ss_pred Cccc-cccCCCCCCChhHHHHHHHHHHHcc---CCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHh
Q psy5743 530 GFDT-IVGERGIMLSGGQKQRIAIARALIK---KSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIR 604 (644)
Q Consensus 530 Gl~T-~ige~G~~LSGGQkQRiaLARAll~---~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~ 604 (644)
|++. .+++....|||||+||++|||||.+ +|+++||||||++||.++...+.+.|.++. +++|+|+|+|+++.++
T Consensus 816 gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~ 895 (924)
T TIGR00630 816 GLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIK 895 (924)
T ss_pred CCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 5654 4688889999999999999999997 599999999999999999999999998875 4789999999999999
Q ss_pred hcCEEEEE------eCCeEEEecChhHH
Q psy5743 605 KSNQICVL------DKGKIVEIGSYAHL 626 (644)
Q Consensus 605 ~aD~Iivl------~~G~ive~Gt~~eL 626 (644)
.||+|++| ++|+|++.|+++++
T Consensus 896 ~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 896 TADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred hCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 99999999 79999999999886
No 389
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.91 E-value=1.9e-23 Score=218.69 Aligned_cols=219 Identities=25% Similarity=0.413 Sum_probs=179.4
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccC-CCCChHHHhcc
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDI-KELDPMYLRSQ 477 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i-~~~~~~~lr~~ 477 (644)
-++++|++..-+. ..+.+++|||+|++||+++|.|-+|-|-+-|+.+|+|+.+|.+|+|.++|+|+ ..+++..+|+.
T Consensus 257 vL~V~~L~v~~~~--~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~ 334 (501)
T COG3845 257 VLEVEDLSVKDRR--GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRL 334 (501)
T ss_pred EEEEeeeEeecCC--CCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhc
Confidence 4889999987542 34679999999999999999999999999999999999999999999999997 78899888876
Q ss_pred -eEEEecCC----CCCcccHHHHHhcCCCCCCC------CCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhH
Q psy5743 478 -IGSVSQEP----TLFSGTIYENILYGVNDSSS------VTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQ 546 (644)
Q Consensus 478 -i~~V~Q~~----~Lf~gTIreNI~~g~~~~~~------~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQ 546 (644)
++|||.|- -...-|+.||+.++.-+..+ .+..++.+.++..--.-.|. +.|-+++ -.+||||+
T Consensus 335 G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr--~~~~~~~----a~~LSGGN 408 (501)
T COG3845 335 GLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVR--APSPDAP----ARSLSGGN 408 (501)
T ss_pred CCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCcc--CCCCCcc----hhhcCCcc
Confidence 99999876 47788999999988643111 23344444333221111111 3444444 35799999
Q ss_pred HHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHH-hhcCEEEEEeCCeEEEecChh
Q psy5743 547 KQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYA 624 (644)
Q Consensus 547 kQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~ 624 (644)
.||+-+||-+.++|++||..+||-+||..+.+.|.+.|.+.. +++.|++|+-.|+.+ .-||+|.||.+|+|+...+.+
T Consensus 409 qQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~~~~~ 488 (501)
T COG3845 409 QQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGIVPPE 488 (501)
T ss_pred eehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceecccccc
Confidence 999999999999999999999999999999999999987754 588999999999986 679999999999999887766
Q ss_pred H
Q psy5743 625 H 625 (644)
Q Consensus 625 e 625 (644)
+
T Consensus 489 ~ 489 (501)
T COG3845 489 E 489 (501)
T ss_pred c
Confidence 5
No 390
>KOG0062|consensus
Probab=99.91 E-value=7.1e-24 Score=221.56 Aligned_cols=195 Identities=24% Similarity=0.306 Sum_probs=163.5
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcc
Q psy5743 398 GEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQ 477 (644)
Q Consensus 398 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~ 477 (644)
..+++.+|+|.|+++ +.+.+.++++.+..-+++++||++|+||||++|++.+...|..|.+.+.+ |.+
T Consensus 361 p~l~i~~V~f~y~p~-~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-----------r~r 428 (582)
T KOG0062|consen 361 PNLRISYVAFEYTPS-EYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-----------RLR 428 (582)
T ss_pred CeeEEEeeeccCCCc-chhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-----------cce
Confidence 469999999999864 33789999999999999999999999999999999999999999999988 668
Q ss_pred eEEEecCCCCC-cccHHH--HHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHH
Q psy5743 478 IGSVSQEPTLF-SGTIYE--NILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIAR 554 (644)
Q Consensus 478 i~~V~Q~~~Lf-~gTIre--NI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLAR 554 (644)
|+|-.|...=| +-.+.+ -..=-.|. .++||+.+.|...|+...+..-| -..||||||-|+++|-
T Consensus 429 i~~f~Qhhvd~l~~~v~~vd~~~~~~pG---~~~ee~r~hl~~~Gl~g~la~~s----------i~~LSGGQKsrvafA~ 495 (582)
T KOG0062|consen 429 IKYFAQHHVDFLDKNVNAVDFMEKSFPG---KTEEEIRRHLGSFGLSGELALQS----------IASLSGGQKSRVAFAA 495 (582)
T ss_pred ecchhHhhhhHHHHHhHHHHHHHHhCCC---CCHHHHHHHHHhcCCCchhhhcc----------ccccCCcchhHHHHHH
Confidence 99999965432 222211 11111122 47999999999888766554322 1469999999999999
Q ss_pred HHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhh-cCEEEEEeCCeEEE
Q psy5743 555 ALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRK-SNQICVLDKGKIVE 619 (644)
Q Consensus 555 All~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~-aD~Iivl~~G~ive 619 (644)
+.+.+|.+|+|||||.+||.++-..+-++|++. +--||+|||+.+.+.. |+.+++.++|+|..
T Consensus 496 ~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F--~GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 496 CTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF--NGGVVLVSHDEEFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred HhcCCCcEEEecCCCccccHHHHHHHHHHHHhc--CCcEEEEECcHHHHhhcCceeEEEcCCcEEe
Confidence 999999999999999999999999999999887 6789999999999965 99999999999974
No 391
>KOG0927|consensus
Probab=99.90 E-value=8.2e-23 Score=214.78 Aligned_cols=223 Identities=24% Similarity=0.374 Sum_probs=151.2
Q ss_pred CCccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHh
Q psy5743 396 LKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLR 475 (644)
Q Consensus 396 ~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr 475 (644)
....|.++|++++|++ .+.++|..|++.+|++++|+|++||||||+++.+.|--.|..-++.+==. -+++.+..+.
T Consensus 72 ~s~dvk~~sls~s~~g---~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~l-s~e~~ps~~~ 147 (614)
T KOG0927|consen 72 ISRDVKIESLSLSFHG---VELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLL-SREIEPSEKQ 147 (614)
T ss_pred ccccceeeeeeeccCC---ceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhh-cccCCCchHH
Confidence 3457999999999975 46899999999999999999999999999999999998886555432110 0112221111
Q ss_pred cceEEEecCCCCCccc-------HHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhh----hh-cCccc-cccCCCCCC
Q psy5743 476 SQIGSVSQEPTLFSGT-------IYENILYGVNDSSSVTKSDIIHAAKEANAYGFVID----FK-NGFDT-IVGERGIML 542 (644)
Q Consensus 476 ~~i~~V~Q~~~Lf~gT-------IreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~----lp-~Gl~T-~ige~G~~L 542 (644)
.- |...-+..+ ..|++.-..++.....-+++++-+...+.+.+=.+ |+ .|... ..-..-.+|
T Consensus 148 av-----~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~ 222 (614)
T KOG0927|consen 148 AV-----QAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDL 222 (614)
T ss_pred HH-----HHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhcc
Confidence 10 111111111 12333322221000111122222222222211111 11 12222 223345789
Q ss_pred ChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCc-eEEEEccCchHHh-hcCEEEEEeCCe-EEE
Q psy5743 543 SGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGK-TVLTIAHRLSTIR-KSNQICVLDKGK-IVE 619 (644)
Q Consensus 543 SGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~-TvI~IaHrl~~i~-~aD~Iivl~~G~-ive 619 (644)
|||||-|++|||||+.+|++|+|||||.+||.++...+.+.|.+. ++ |+++++|.-.++. -|.+|+.|++++ +..
T Consensus 223 SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~--d~~~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y 300 (614)
T KOG0927|consen 223 SGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKY--DRIILVIVSHSQDFLNGVCTNIIHLDNKKLIYY 300 (614)
T ss_pred CchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhc--cCceEEEEecchhhhhhHhhhhheecccceeee
Confidence 999999999999999999999999999999999999999999887 55 8999999999995 599999999999 778
Q ss_pred ecChhHHhcC
Q psy5743 620 IGSYAHLIKN 629 (644)
Q Consensus 620 ~Gt~~eLl~~ 629 (644)
.|+|++.+..
T Consensus 301 ~Gnydqy~~t 310 (614)
T KOG0927|consen 301 EGNYDQYVKT 310 (614)
T ss_pred cCCHHHHhhH
Confidence 9999998753
No 392
>KOG0066|consensus
Probab=99.90 E-value=3.1e-23 Score=211.42 Aligned_cols=198 Identities=27% Similarity=0.395 Sum_probs=152.3
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
-+-+.||+|.||+ .+|.+++++|-|.--..||||||+|.|||||++||.|-++|+.|+.+=+- |=+|
T Consensus 586 vLGlH~VtFgy~g--qkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnh-----------rL~i 652 (807)
T KOG0066|consen 586 VLGLHDVTFGYPG--QKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNH-----------RLRI 652 (807)
T ss_pred eeecccccccCCC--CCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccc-----------eeee
Confidence 4678999999986 56899999999999999999999999999999999999999999887543 4478
Q ss_pred EEEecCCC---CCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHH
Q psy5743 479 GSVSQEPT---LFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARA 555 (644)
Q Consensus 479 ~~V~Q~~~---Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARA 555 (644)
|+.-|..- --..|-.|-+.-+-+ .+.++..+++-..|+..- -+|. .-..||||||-|+++|-.
T Consensus 653 G~FdQh~~E~L~~Eetp~EyLqr~FN----lpyq~ARK~LG~fGL~sH-------AHTi---kikdLSGGQKaRValaeL 718 (807)
T KOG0066|consen 653 GWFDQHANEALNGEETPVEYLQRKFN----LPYQEARKQLGTFGLASH-------AHTI---KIKDLSGGQKARVALAEL 718 (807)
T ss_pred echhhhhHHhhccccCHHHHHHHhcC----CChHHHHHHhhhhhhhhc-------cceE---eeeecCCcchHHHHHHHH
Confidence 88887542 112344444443321 455666666655554321 2221 124699999999999999
Q ss_pred HccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcC-EEEEEeCCeEEE-ecChhH
Q psy5743 556 LIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSN-QICVLDKGKIVE-IGSYAH 625 (644)
Q Consensus 556 ll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD-~Iivl~~G~ive-~Gt~~e 625 (644)
-++.|+||||||||.+||.++-..+-++|.+. +-.||+|+|+-..+...| ..+|+++-.|-| .|.+++
T Consensus 719 al~~PDvlILDEPTNNLDIESIDALaEAIney--~GgVi~VsHDeRLi~eT~C~LwVvE~Q~i~eIdGdFeD 788 (807)
T KOG0066|consen 719 ALGGPDVLILDEPTNNLDIESIDALAEAINEY--NGGVIMVSHDERLIVETDCNLWVVENQGIDEIDGDFED 788 (807)
T ss_pred hcCCCCEEEecCCCCCcchhhHHHHHHHHHhc--cCcEEEEecccceeeecCceEEEEccCChhhccccHHH
Confidence 99999999999999999999999999999988 678999999999887765 455666554443 355543
No 393
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.89 E-value=5.5e-23 Score=200.51 Aligned_cols=169 Identities=17% Similarity=0.179 Sum_probs=118.2
Q ss_pred cceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCc---cCCCCChHHHhcceEEEecCCCCCcccHHHH
Q psy5743 419 NDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGV---DIKELDPMYLRSQIGSVSQEPTLFSGTIYEN 495 (644)
Q Consensus 419 ~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~---~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreN 495 (644)
+++++++.+| +.+|+||+|||||||+..|.-.+....+. .-.|. ++-..+ .-...|.++.|+.-++. |
T Consensus 13 ~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~~-~~r~~~~~~~i~~~--~~~~~i~~~~~~~~~~~-----~ 83 (198)
T cd03276 13 RHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKASD-TNRGSSLKDLIKDG--ESSAKITVTLKNQGLDA-----N 83 (198)
T ss_pred eeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCccc-ccccccHHHHhhCC--CCeEEEEEEEEcCCccC-----C
Confidence 5566777776 77999999999999999997544332210 01122 111111 11456888888877665 2
Q ss_pred HhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHH----ccCCCEEEeecccCC
Q psy5743 496 ILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARAL----IKKSKILLLDEATSA 571 (644)
Q Consensus 496 I~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAl----l~~p~IliLDEaTSa 571 (644)
+. ...+.+++.++++. ..- ..+...+||||||||++||||+ +.+|++++|||||++
T Consensus 84 -----~~-~~~~~~~~~~~l~~----------~~~----~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~g 143 (198)
T cd03276 84 -----PL-CVLSQDMARSFLTS----------NKA----AVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVF 143 (198)
T ss_pred -----cC-CHHHHHHHHHHhcc----------ccc----cCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccc
Confidence 21 00112222222222 112 2334568999999999999999 699999999999999
Q ss_pred CCHHHHHHHHHHHHHHcC----CceEEEEccCchHHhhcCEEEEEeCCe
Q psy5743 572 LDAENEYLVQSAIEKLIE----GKTVLTIAHRLSTIRKSNQICVLDKGK 616 (644)
Q Consensus 572 LD~~~e~~i~~~l~~~~~----~~TvI~IaHrl~~i~~aD~Iivl~~G~ 616 (644)
||..+...+.+.|.+..+ ++|+|++||+++.+...|+|-+|..|+
T Consensus 144 lD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~d~v~~~~~~~ 192 (198)
T cd03276 144 MDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISGLASSDDVKVFRMKD 192 (198)
T ss_pred cCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccccccccceeEEEecC
Confidence 999999999999988643 358999999999999999999998753
No 394
>KOG0062|consensus
Probab=99.88 E-value=7.1e-23 Score=214.11 Aligned_cols=205 Identities=25% Similarity=0.318 Sum_probs=149.6
Q ss_pred CccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhc
Q psy5743 397 KGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRS 476 (644)
Q Consensus 397 ~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~ 476 (644)
..+|..+|.+.+|.+ +.+|.+-++++..|-..++||++|+|||||++.|.. |+|..-.++ ++.|-
T Consensus 78 ~~Di~~~~fdLa~G~---k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~ve------qE~~g 142 (582)
T KOG0062|consen 78 SKDIHIDNFDLAYGG---KILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVE------QEVRG 142 (582)
T ss_pred ccceeeeeeeeeecc---hhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCch------hheec
Confidence 346999999999963 578999999999999999999999999999999998 333221110 00110
Q ss_pred ceEEEecCCCCCcccHHHHHhcCCCCCC-CCCHHHHHH-HHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHH
Q psy5743 477 QIGSVSQEPTLFSGTIYENILYGVNDSS-SVTKSDIIH-AAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIAR 554 (644)
Q Consensus 477 ~i~~V~Q~~~Lf~gTIreNI~~g~~~~~-~~~~~~i~~-a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLAR 554 (644)
--....|+ .+=.+|-|.-+..-.+.-. ..+.+|+.. ++.-.|..+.....|. ..||||=|=|++|||
T Consensus 143 ~~t~~~~~-~l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt----------~slSGGWrMrlaLAR 211 (582)
T KOG0062|consen 143 DDTEALQS-VLESDTERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPT----------KSLSGGWRMRLALAR 211 (582)
T ss_pred cchHHHhh-hhhccHHHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccc----------cccCcchhhHHHHHH
Confidence 00001111 2233444444433321100 014566666 6777777666665553 479999999999999
Q ss_pred HHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhh-cCEEEEEeCCeEE-EecChhHHhcC
Q psy5743 555 ALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRK-SNQICVLDKGKIV-EIGSYAHLIKN 629 (644)
Q Consensus 555 All~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~-aD~Iivl~~G~iv-e~Gt~~eLl~~ 629 (644)
|++++||||+|||||.+||..+-..+.+.|... +.|+|+|+|+-.++.. |.-|+.+++-++- ..|++++..+.
T Consensus 212 Alf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~--~~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~~~Fvk~ 286 (582)
T KOG0062|consen 212 ALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTW--KITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNYSQFVKT 286 (582)
T ss_pred HHhcCCCEEeecCCcccchhHHHHHHHHHHhhC--CceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCcHHHHHHh
Confidence 999999999999999999999999999988876 4899999999999955 7888888876663 77899888764
No 395
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.87 E-value=1.1e-22 Score=203.61 Aligned_cols=197 Identities=17% Similarity=0.241 Sum_probs=140.8
Q ss_pred eEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEE--EECCccCCCCChHHHhcce---EEEecCCCCCcccHHHHH
Q psy5743 422 SLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI--LIDGVDIKELDPMYLRSQI---GSVSQEPTLFSGTIYENI 496 (644)
Q Consensus 422 sl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I--~idg~~i~~~~~~~lr~~i---~~V~Q~~~Lf~gTIreNI 496 (644)
=+.+.+||+++|+|++|+|||||++.+.+.++...+++ .+-...-+..+..++.+.+ -++.+-.. +-...+
T Consensus 10 ~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~----~~~~~~ 85 (249)
T cd01128 10 FAPIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDE----PPERHV 85 (249)
T ss_pred ecccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCC----CHHHHH
Confidence 35788999999999999999999999999998764433 3332222234555555544 11111110 111111
Q ss_pred hcCCCCCCCCCHHHHHHHHH---HHh-----hccchhhhhcCccccccCCCCCCChhH--------HHHHHHHHHHccCC
Q psy5743 497 LYGVNDSSSVTKSDIIHAAK---EAN-----AYGFVIDFKNGFDTIVGERGIMLSGGQ--------KQRIAIARALIKKS 560 (644)
Q Consensus 497 ~~g~~~~~~~~~~~i~~a~~---~a~-----l~~~i~~lp~Gl~T~ige~G~~LSGGQ--------kQRiaLARAll~~p 560 (644)
... . .+.+.++ ..| +-|.+.++|+++++.+|+.|.++|||| +||+++||++++++
T Consensus 86 ~~~--------~-~~~~~a~~~~~~G~~vll~iDei~r~a~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~g 156 (249)
T cd01128 86 QVA--------E-MVLEKAKRLVEHGKDVVILLDSITRLARAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGG 156 (249)
T ss_pred HHH--------H-HHHHHHHHHHHCCCCEEEEEECHHHhhhhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCC
Confidence 100 0 1111111 112 346788899999999999999999999 99999999999999
Q ss_pred CEEEeecccCCCCHHHHHH--HHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEecChhHHhcCCCcHHHHHH
Q psy5743 561 KILLLDEATSALDAENEYL--VQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLM 638 (644)
Q Consensus 561 ~IliLDEaTSaLD~~~e~~--i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eLl~~~~~~y~~l~ 638 (644)
+|.+| ||+++|+.+|.. +.+.++. .++|.|+++||+++..++|.|.||++|++ |++++.. ++.|+.++
T Consensus 157 sIt~l--~T~~~d~~~~~~~~i~~~~~~--~~~~~ivls~~la~~~~~paI~vl~s~sr-----~~~ll~~-~~~~~~~~ 226 (249)
T cd01128 157 SLTII--ATALVDTGSRMDDVIFEEFKG--TGNMELVLDRRLAERRIFPAIDILKSGTR-----KEELLLD-PEELQRMW 226 (249)
T ss_pred ceEEe--eeheecCCCcccchHHHHHhc--CCCcEEEEchHHhhCCCCCeEEEcCCCCc-----cchhhCC-HHHHHHHH
Confidence 99999 999999866653 4333332 47999999999999999999999999997 7899875 57888886
Q ss_pred Hhh
Q psy5743 639 KYQ 641 (644)
Q Consensus 639 ~~q 641 (644)
+.+
T Consensus 227 ~~r 229 (249)
T cd01128 227 LLR 229 (249)
T ss_pred HHH
Confidence 543
No 396
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.87 E-value=8.1e-22 Score=188.75 Aligned_cols=85 Identities=24% Similarity=0.281 Sum_probs=78.3
Q ss_pred hhhhhcCccccccCCCCCCChhHHHHHHHHHHHc----cCCCEEEeecccCCCCHHHHHHHHHHHHHHcC-CceEEEEcc
Q psy5743 524 VIDFKNGFDTIVGERGIMLSGGQKQRIAIARALI----KKSKILLLDEATSALDAENEYLVQSAIEKLIE-GKTVLTIAH 598 (644)
Q Consensus 524 i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll----~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~-~~TvI~IaH 598 (644)
+.-+|+|..|+| ||||||||++||||+. .+|+++++||||++||+.+.+.+.+.+.+..+ ++|+|+|||
T Consensus 83 ~~~~~~~~~~~~------LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH 156 (178)
T cd03239 83 YFLVLQGKVEQI------LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITL 156 (178)
T ss_pred eEEecCCcCccc------CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEEC
Confidence 456799999998 9999999999999984 79999999999999999999999999988754 489999999
Q ss_pred CchHHhhcCEEEEEeC
Q psy5743 599 RLSTIRKSNQICVLDK 614 (644)
Q Consensus 599 rl~~i~~aD~Iivl~~ 614 (644)
+++.+..||+++++++
T Consensus 157 ~~~~~~~adrvi~i~~ 172 (178)
T cd03239 157 KKEMFENADKLIGVLF 172 (178)
T ss_pred CHHHHhhCCeEEEEEE
Confidence 9999999999999975
No 397
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.87 E-value=6.9e-22 Score=203.59 Aligned_cols=183 Identities=26% Similarity=0.424 Sum_probs=138.5
Q ss_pred EEEEEcCCCCCCccccceeEEEeC-----CCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 404 NIRFSYPSRPDAVILNDLSLKIQS-----GSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 404 ~vsf~Y~~~~~~~vL~~isl~i~~-----G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
+.-+.|++- ...+.+..|++.+ ||.++++||+|-||||++++|+|..+|++|+ ..+= .+
T Consensus 340 ~~lv~y~~~--~k~~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~-~~~~-------------~v 403 (591)
T COG1245 340 DTLVEYPDL--KKTYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS-EEDL-------------KV 403 (591)
T ss_pred ceeeecchh--eeecCceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC-Cccc-------------eE
Confidence 444667642 3446677777665 6789999999999999999999999999998 2221 78
Q ss_pred EEEecCCC-CCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHc
Q psy5743 479 GSVSQEPT-LFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALI 557 (644)
Q Consensus 479 ~~V~Q~~~-Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll 557 (644)
+|=||-.. -|+||+++=+.-..++. +...-. . ..|. -|..++-.+-..-.+||||+.||+|||-||.
T Consensus 404 SyKPQyI~~~~~gtV~~~l~~~~~~~--~~~s~~-----~----~ei~-~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~ 471 (591)
T COG1245 404 SYKPQYISPDYDGTVEDLLRSAIRSA--FGSSYF-----K----TEIV-KPLNLEDLLERPVDELSGGELQRVAIAAALS 471 (591)
T ss_pred eecceeecCCCCCcHHHHHHHhhhhh--cccchh-----H----Hhhc-CccchHHHHhcccccCCchhHHHHHHHHHhc
Confidence 89999432 48999998876443320 111111 1 1111 1445555555566789999999999999999
Q ss_pred cCCCEEEeecccCCCCHHHHHHHHHHHHHHc--CCceEEEEccCchHHhh-cCEEEEEeC
Q psy5743 558 KKSKILLLDEATSALDAENEYLVQSAIEKLI--EGKTVLTIAHRLSTIRK-SNQICVLDK 614 (644)
Q Consensus 558 ~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~--~~~TvI~IaHrl~~i~~-aD~Iivl~~ 614 (644)
|++|+++||||++.||.+..-.+-+.|++.. .++|.++|-|++-.+.. +|+++|.+.
T Consensus 472 reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~G 531 (591)
T COG1245 472 READLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFEG 531 (591)
T ss_pred cccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEec
Confidence 9999999999999999998888888888865 47899999999998854 899999973
No 398
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.85 E-value=7.9e-21 Score=208.18 Aligned_cols=109 Identities=31% Similarity=0.512 Sum_probs=96.3
Q ss_pred Cccc-cccCCCCCCChhHHHHHHHHHHHccCC---CEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHh
Q psy5743 530 GFDT-IVGERGIMLSGGQKQRIAIARALIKKS---KILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIR 604 (644)
Q Consensus 530 Gl~T-~ige~G~~LSGGQkQRiaLARAll~~p---~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~ 604 (644)
|+.. .+|.....|||||.|||-||.-|.+.+ -++||||||.+|-.+.-+++++.|.++. ++.|||+|-|+|+.|+
T Consensus 810 GLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNLdVIk 889 (935)
T COG0178 810 GLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLDVIK 889 (935)
T ss_pred CcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecccceEe
Confidence 6654 679999999999999999999999987 9999999999999999999999998864 6899999999999999
Q ss_pred hcCEEEEE------eCCeEEEecChhHHhcCCCcHHHHHH
Q psy5743 605 KSNQICVL------DKGKIVEIGSYAHLIKNPNSMFNKLM 638 (644)
Q Consensus 605 ~aD~Iivl------~~G~ive~Gt~~eLl~~~~~~y~~l~ 638 (644)
.||.|+-| +.|+|+.+||++|+.+.+.++-.+.+
T Consensus 890 ~AD~IIDLGPeGG~~GG~iva~GTPeeva~~~~S~Tg~yL 929 (935)
T COG0178 890 TADWIIDLGPEGGDGGGEIVASGTPEEVAKVKASYTGKYL 929 (935)
T ss_pred ecCEEEEcCCCCCCCCceEEEecCHHHHHhCccchhHHHH
Confidence 99999999 47899999999999986544333333
No 399
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.85 E-value=6.5e-21 Score=177.82 Aligned_cols=229 Identities=22% Similarity=0.348 Sum_probs=176.9
Q ss_pred EEEEEEEEcCCC-CCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCC----CCCcEEEECCccCCCCChHHHh
Q psy5743 401 DFNNIRFSYPSR-PDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD----PQNGKILIDGVDIKELDPMYLR 475 (644)
Q Consensus 401 ~~~~vsf~Y~~~-~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~----p~~G~I~idg~~i~~~~~~~lr 475 (644)
.++|++.-.... ....+.+++|+++..||+-++||+||||||-++|.+.|..+ .+.-+..+|++|+-.+++..-|
T Consensus 5 DIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RR 84 (330)
T COG4170 5 DIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERR 84 (330)
T ss_pred cccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhh
Confidence 344554443321 23457999999999999999999999999999999999875 3566778899999999999988
Q ss_pred cc----eEEEecCCCCCcc---c----HHHHHhcCCCCC-----CCCCHHHHHHHHHHHhhcc--chhhhhcCccccccC
Q psy5743 476 SQ----IGSVSQEPTLFSG---T----IYENILYGVNDS-----SSVTKSDIIHAAKEANAYG--FVIDFKNGFDTIVGE 537 (644)
Q Consensus 476 ~~----i~~V~Q~~~Lf~g---T----IreNI~~g~~~~-----~~~~~~~i~~a~~~a~l~~--~i~~lp~Gl~T~ige 537 (644)
+- |++++|+|.-.-+ + +-+||-...=.. -.-...+..+.+..+|+.| +|++ .|-
T Consensus 85 k~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~---SYP----- 156 (330)
T COG4170 85 KLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMR---SYP----- 156 (330)
T ss_pred hhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHH---hCc-----
Confidence 75 5689999985432 2 345664321000 0123445667788888865 3332 222
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc--CCceEEEEccCchHH-hhcCEEEEEeC
Q psy5743 538 RGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI--EGKTVLTIAHRLSTI-RKSNQICVLDK 614 (644)
Q Consensus 538 ~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~--~~~TvI~IaHrl~~i-~~aD~Iivl~~ 614 (644)
..|-.|+-|++.||-|+..+|++||-||||.++|+.|..+|...+.++- .+.|+++++|++.++ +.||+|-||-=
T Consensus 157 --~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYC 234 (330)
T COG4170 157 --YELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYC 234 (330)
T ss_pred --chhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEEe
Confidence 3456678899999999999999999999999999999999999987764 467899999999998 56999999999
Q ss_pred CeEEEecChhHHhcCCCcHHHHHHH
Q psy5743 615 GKIVEIGSYAHLIKNPNSMFNKLMK 639 (644)
Q Consensus 615 G~ive~Gt~~eLl~~~~~~y~~l~~ 639 (644)
|+-+|++.-++|++.+.-.|.+-.-
T Consensus 235 GQ~~ESa~~e~l~~~PhHPYTqALi 259 (330)
T COG4170 235 GQTVESAPSEELVTMPHHPYTQALI 259 (330)
T ss_pred cccccccchhHHhcCCCCchHHHHH
Confidence 9999999999999987777766543
No 400
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.85 E-value=3.5e-21 Score=189.77 Aligned_cols=180 Identities=16% Similarity=0.188 Sum_probs=115.4
Q ss_pred cceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCC---CCccc----
Q psy5743 419 NDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPT---LFSGT---- 491 (644)
Q Consensus 419 ~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~---Lf~gT---- 491 (644)
+++.++..+| ..+|+|++|||||||+..|.-.+-...... . +.-..+++.+. =.++.+ -|++.
T Consensus 15 ~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~~~~~~~---~---r~~~~~~~i~~---g~~~~~v~~~~~~~~~~~ 84 (213)
T cd03277 15 DETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLGGKPKLL---G---RAKKVGEFVKR---GCDEGTIEIELYGNPGNI 84 (213)
T ss_pred ceeEEecCCC-eEEEECCCCCCHHHHHHHHHHHhcCCcccc---c---cccCHHHHhhC---CCCcEEEEEEEEeCCCcc
Confidence 3444544443 668999999999999998866552221100 0 00011111110 011110 01111
Q ss_pred HHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHH----HccCCCEEEeec
Q psy5743 492 IYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARA----LIKKSKILLLDE 567 (644)
Q Consensus 492 IreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARA----ll~~p~IliLDE 567 (644)
-.+|+++. .+.+.+.+.+..... |.+..+|.+.+.. ..+...||||||||+.+|++ ++.+|+++++||
T Consensus 85 ~~~n~~~~------~~q~~~~~~~~~~~~-e~l~~~~~~~~~~-~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDE 156 (213)
T cd03277 85 QVDNLCQF------LPQDRVGEFAKLSPI-ELLVKFREGEQLQ-ELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDE 156 (213)
T ss_pred ccCCceEE------EchHHHHHHHhCChH-hHheeeecCCCcc-ccchhhccccHHHHHHHHHHHHHHhccCCCEEEEec
Confidence 34455533 345666666666554 5556677766543 55678999999999887755 468999999999
Q ss_pred ccCCCCHHHHHHHHHHHHHHcCC---ceEEEEccCchHH-hhcC--EEEEEeCCe
Q psy5743 568 ATSALDAENEYLVQSAIEKLIEG---KTVLTIAHRLSTI-RKSN--QICVLDKGK 616 (644)
Q Consensus 568 aTSaLD~~~e~~i~~~l~~~~~~---~TvI~IaHrl~~i-~~aD--~Iivl~~G~ 616 (644)
||++||+.+.+.+.+.|.+..+. .|+|+|||++..+ ..|| +|+++++|+
T Consensus 157 P~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~~~~~~v~~l~~g~ 211 (213)
T cd03277 157 INQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNYHEKMTVLCVYNGP 211 (213)
T ss_pred ccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCcccCceEEEEEecCc
Confidence 99999999999999999887543 4799999997544 4565 777777775
No 401
>KOG2355|consensus
Probab=99.84 E-value=2.3e-20 Score=173.72 Aligned_cols=211 Identities=23% Similarity=0.313 Sum_probs=156.9
Q ss_pred CccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCC-CC-----
Q psy5743 397 KGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKE-LD----- 470 (644)
Q Consensus 397 ~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~-~~----- 470 (644)
+..|+++++.|+|+.. .|++.|+|+++|.|..+.+||.+|||||||+|+|.|-.-.-.|.|.+.|.+--. -+
T Consensus 11 ~~aievsgl~f~y~~~--dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sg 88 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKVS--DPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSG 88 (291)
T ss_pred cceEEEeccEEecccC--CceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccC
Confidence 3579999999999863 389999999999999999999999999999999999998888999999976432 11
Q ss_pred -----hHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChh
Q psy5743 471 -----PMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGG 545 (644)
Q Consensus 471 -----~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGG 545 (644)
-.+|++..+.-- +..|.-+-=.+-+.||-.. .+.++=++ |-+=+|-.+-=+-..+|-|
T Consensus 89 dl~YLGgeW~~~~~~ag-evplq~D~sae~mifgV~g---~dp~Rre~-------------LI~iLDIdl~WRmHkvSDG 151 (291)
T KOG2355|consen 89 DLSYLGGEWSKTVGIAG-EVPLQGDISAEHMIFGVGG---DDPERREK-------------LIDILDIDLRWRMHKVSDG 151 (291)
T ss_pred ceeEecccccccccccc-cccccccccHHHHHhhccC---CChhHhhh-------------hhhheeccceEEEeecccc
Confidence 123444444333 2222222112233333221 11111111 2222444444455689999
Q ss_pred HHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc--CCceEEEEccCchHH-hhcCEEEEEeCCeEEEecC
Q psy5743 546 QKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI--EGKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGS 622 (644)
Q Consensus 546 QkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~--~~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt 622 (644)
||+|+.|+-.|++.=++|+|||-|-.||.-....+++-+++-. +++|+|..||=..-+ ..+.+++.|.+|+++..-+
T Consensus 152 qrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~~l~ 231 (291)
T KOG2355|consen 152 QRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVDNLK 231 (291)
T ss_pred chhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeeeccc
Confidence 9999999999999999999999999999999999999987743 588999999999877 5589999999999998655
Q ss_pred hhHH
Q psy5743 623 YAHL 626 (644)
Q Consensus 623 ~~eL 626 (644)
+++.
T Consensus 232 ~~~i 235 (291)
T KOG2355|consen 232 YQKI 235 (291)
T ss_pred cchh
Confidence 5544
No 402
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.84 E-value=2.2e-20 Score=225.62 Aligned_cols=207 Identities=22% Similarity=0.250 Sum_probs=149.2
Q ss_pred ccceeEEEeCCCEEEEECCCCCcHHHHHHHHh------c---cCCCCCcEEEECCccCCCCCh----------HHHhcce
Q psy5743 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLL------R---LYDPQNGKILIDGVDIKELDP----------MYLRSQI 478 (644)
Q Consensus 418 L~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~------g---~~~p~~G~I~idg~~i~~~~~----------~~lr~~i 478 (644)
|+|++++||-|..++|.|.||||||||++=.+ . -.+..+--|.||-.||..-.. +.+|+-.
T Consensus 1506 Lk~v~v~iPlg~l~~vTGVSGSGKStLi~~~l~~~l~~~l~~g~~~~~~vi~vdQspIgrt~RS~paTY~g~fd~IR~lF 1585 (1809)
T PRK00635 1506 IQNLNVSAPLHSLVAISGVSGSGKTSLLLEGFYKQACALIEKGPSVFSEIIFLDSHPQISSQRSDISTYFDIAPSLRNFY 1585 (1809)
T ss_pred CCcceeeccCCcEEEEeCCCCCcHHHHHHHHHHHHHHHHhcccccccCcEEEEeCCCCCCCCCCchhhhhhhHHHHHHHH
Confidence 89999999999999999999999999997554 1 113344568888888865443 3445444
Q ss_pred EEEec------CC--C--------------------------------------------------------CCcccHHH
Q psy5743 479 GSVSQ------EP--T--------------------------------------------------------LFSGTIYE 494 (644)
Q Consensus 479 ~~V~Q------~~--~--------------------------------------------------------Lf~gTIre 494 (644)
+-.|+ .+ + +++.||.|
T Consensus 1586 A~~~~ak~rg~~~~~FSfN~~~GrC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~~~e~L~v~~~gk~I~dvL~mtv~e 1665 (1809)
T PRK00635 1586 ASLTQAKALNISASMFSTNTKQGQCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRIQPLAQEVVYEGKHFGQLLQTPIEE 1665 (1809)
T ss_pred hcCHHHHHcCCCcccccccCCCCCCCCCccCceEEEecccCCCcccCCCCCCCcCCCHHHHhheeCCCCHHHHhcCCHHH
Confidence 32221 01 1 12333333
Q ss_pred HHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccC---CCEEEeecccCC
Q psy5743 495 NILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKK---SKILLLDEATSA 571 (644)
Q Consensus 495 NI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~---p~IliLDEaTSa 571 (644)
-+.|+.. ..++.+.+ +.+.++--||- .+|+.-..|||||+|||-||.-|.++ +.++||||||.+
T Consensus 1666 a~~~F~~------~~~i~~~L------~~L~~vGLgYl-~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~G 1732 (1809)
T PRK00635 1666 VAETFPF------LKKIQKPL------QALIDNGLGYL-PLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATS 1732 (1809)
T ss_pred HHHHhhc------cHHHHHHH------HHHHHcCCCee-eCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCC
Confidence 3333311 11111111 11122222443 46999999999999999999999976 789999999999
Q ss_pred CCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhhcCEEEEEe------CCeEEEecChhHHhcCCCcHHHHH
Q psy5743 572 LDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIRKSNQICVLD------KGKIVEIGSYAHLIKNPNSMFNKL 637 (644)
Q Consensus 572 LD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~~aD~Iivl~------~G~ive~Gt~~eLl~~~~~~y~~l 637 (644)
|+.+.-+.+.+.++++. .+.|+|+|.|+++.++.||.|+-|. .|+|+.+||++|+.+.+++.=.+.
T Consensus 1733 Lh~~d~~~Ll~~l~~L~~~g~tvivieH~~~~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~~~~S~t~~~ 1805 (1809)
T PRK00635 1733 LDNQQKSALLVQLRTLVSLGHSVIYIDHDPALLKQADYLIEMGPGSGKTGGKILFSGPPKDISASKDSLLKTY 1805 (1809)
T ss_pred CCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhhCCCCcHHHH
Confidence 99999999999998874 5899999999999999999999994 689999999999998755544433
No 403
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.84 E-value=1.7e-20 Score=192.81 Aligned_cols=76 Identities=22% Similarity=0.326 Sum_probs=70.9
Q ss_pred CCChhHHHHHHHHHHHcc----CCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCe
Q psy5743 541 MLSGGQKQRIAIARALIK----KSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGK 616 (644)
Q Consensus 541 ~LSGGQkQRiaLARAll~----~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ 616 (644)
.|||||+||++|||+++. +|++++|||||++||+++...+.+.+.+..+++|+|+|||+++....||++++|++|.
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~~~~~~~~d~~~~l~~~~ 249 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQVAAMADNHFLVEKEV 249 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEechHHHHHhcCcEEEEEEec
Confidence 599999999999997653 9999999999999999999999999999877899999999999999999999999874
No 404
>KOG0065|consensus
Probab=99.83 E-value=1.6e-20 Score=215.99 Aligned_cols=206 Identities=28% Similarity=0.441 Sum_probs=172.3
Q ss_pred CCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCC---CCcEEEECCccCCCCChHHHhcceEEEecCCCCCc-
Q psy5743 414 DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDP---QNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFS- 489 (644)
Q Consensus 414 ~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p---~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~- 489 (644)
...+|+|+|.-++||+.+.+.||.|||||||++.|.|-.+- ..|+|..||.+.+++-+ ++.++|.+|++..|.
T Consensus 127 ~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~---~~~~aY~~e~DvH~p~ 203 (1391)
T KOG0065|consen 127 KIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP---KKTVAYNSEQDVHFPE 203 (1391)
T ss_pred cceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccccc---CceEEeccccccccce
Confidence 34689999999999999999999999999999999998864 35699999999999988 789999999988886
Q ss_pred ccHHHHHhcCCCCCC------CCCHHHHHHHHHHHhhccc---hhhhhcCccccccCC-CCCCChhHHHHHHHHHHHccC
Q psy5743 490 GTIYENILYGVNDSS------SVTKSDIIHAAKEANAYGF---VIDFKNGFDTIVGER-GIMLSGGQKQRIAIARALIKK 559 (644)
Q Consensus 490 gTIreNI~~g~~~~~------~~~~~~i~~a~~~a~l~~~---i~~lp~Gl~T~ige~-G~~LSGGQkQRiaLARAll~~ 559 (644)
-|+||-|-|...-+. +.++.|-.++ ..|. +-.|....||.||++ ....|||||.|+++|-++..+
T Consensus 204 lTVreTldFa~rck~~~~r~~~~~R~e~~~~-----~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~ 278 (1391)
T KOG0065|consen 204 LTVRETLDFAARCKGPGSRYDEVSRREKLAA-----MTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGP 278 (1391)
T ss_pred eEEeehhhHHHhccCCccccccccHHHHHHH-----HHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecC
Confidence 699999988653211 1223332211 1222 224677899999964 568999999999999999999
Q ss_pred CCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCch--HHhhcCEEEEEeCCeEEEecChhHHh
Q psy5743 560 SKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLS--TIRKSNQICVLDKGKIVEIGSYAHLI 627 (644)
Q Consensus 560 p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~--~i~~aD~Iivl~~G~ive~Gt~~eLl 627 (644)
|+++..||+|-+||+.|.-+|.++|+++.+ +.|.++.=|+++ +..-.|+|++|.+|+++.+|+.++.+
T Consensus 279 ~~~~~~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~ 350 (1391)
T KOG0065|consen 279 ASILFWDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVL 350 (1391)
T ss_pred cceeeeecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHH
Confidence 999999999999999999999999988754 678777777754 68899999999999999999999886
No 405
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.82 E-value=2.1e-20 Score=183.08 Aligned_cols=145 Identities=15% Similarity=0.119 Sum_probs=109.8
Q ss_pred ccceeEEEeCCC-EEEEECCCCCcHHHHHHHHh--------ccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCC
Q psy5743 418 LNDLSLKIQSGS-MTSVIGSSGSGKSTLAMLLL--------RLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLF 488 (644)
Q Consensus 418 L~~isl~i~~G~-~vaIvG~SGsGKSTLl~lL~--------g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf 488 (644)
.-++||++++|+ .++|+||+|||||||++.+. |.+.|....+ .++|+.|.-.
T Consensus 17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~-----------------~~~~~~~~~~-- 77 (200)
T cd03280 17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGS-----------------SLPVFENIFA-- 77 (200)
T ss_pred eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccc-----------------cCcCccEEEE--
Confidence 457899999996 69999999999999999998 6555532111 1233333211
Q ss_pred cccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecc
Q psy5743 489 SGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEA 568 (644)
Q Consensus 489 ~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEa 568 (644)
.+ |.+..+.++-..+|+|+|||..+++++ .+|+++++|||
T Consensus 78 --------~l-------------------------------g~~~~l~~~~s~fs~g~~~~~~i~~~~-~~p~llllDEp 117 (200)
T cd03280 78 --------DI-------------------------------GDEQSIEQSLSTFSSHMKNIARILQHA-DPDSLVLLDEL 117 (200)
T ss_pred --------ec-------------------------------CchhhhhcCcchHHHHHHHHHHHHHhC-CCCcEEEEcCC
Confidence 00 111223344468999999999999995 89999999999
Q ss_pred cCCCCHHHHHHHHH-HHHHHc-CCceEEEEccCchHHhhcCEEEEEeCCeEEEec
Q psy5743 569 TSALDAENEYLVQS-AIEKLI-EGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIG 621 (644)
Q Consensus 569 TSaLD~~~e~~i~~-~l~~~~-~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~G 621 (644)
|+++|++....+.. .++++. .+.|+|++||..+..+.||++++|++|++...+
T Consensus 118 ~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~~l~~~~d~~~~l~~g~l~~~~ 172 (200)
T cd03280 118 GSGTDPVEGAALAIAILEELLERGALVIATTHYGELKAYAYKREGVENASMEFDP 172 (200)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHhcCCCeEEEEEEEec
Confidence 99999998887754 455543 378999999998888999999999999998653
No 406
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.82 E-value=2.8e-20 Score=189.47 Aligned_cols=181 Identities=28% Similarity=0.422 Sum_probs=142.0
Q ss_pred CccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhcc--------CCCCCcEEEECCccCCCCChHHHhcceEEEecCCC
Q psy5743 415 AVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRL--------YDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPT 486 (644)
Q Consensus 415 ~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~--------~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~ 486 (644)
.++|+|+||+|+||+.++|||+|||||||++++++|. |.|++|.|.+--..++.+-+.++ +|.
T Consensus 396 ryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~---------Ep~ 466 (593)
T COG2401 396 RYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEY---------EPE 466 (593)
T ss_pred eeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCccc---------ccc
Confidence 4689999999999999999999999999999999986 57999999875533333322221 333
Q ss_pred CCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEee
Q psy5743 487 LFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLD 566 (644)
Q Consensus 487 Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLD 566 (644)
+=.-||.|-+.-- .-|-..-.+.+..+|+.|-+. |-.. -..||-|||-|..||+++-..|.+++.|
T Consensus 467 f~~~tilehl~s~-----tGD~~~AveILnraGlsDAvl-----yRr~----f~ELStGQKeR~KLAkllaerpn~~~iD 532 (593)
T COG2401 467 FGEVTILEHLRSK-----TGDLNAAVEILNRAGLSDAVL-----YRRK----FSELSTGQKERAKLAKLLAERPNVLLID 532 (593)
T ss_pred cCchhHHHHHhhc-----cCchhHHHHHHHhhccchhhh-----hhcc----HhhcCcchHHHHHHHHHHhcCCCcEEhh
Confidence 3345777776421 123344456778888876543 2222 2469999999999999999999999999
Q ss_pred cccCCCCHHHHHHHHHHHHHHc--CCceEEEEccCchHHhh--cCEEEEEeCCeEE
Q psy5743 567 EATSALDAENEYLVQSAIEKLI--EGKTVLTIAHRLSTIRK--SNQICVLDKGKIV 618 (644)
Q Consensus 567 EaTSaLD~~~e~~i~~~l~~~~--~~~TvI~IaHrl~~i~~--aD~Iivl~~G~iv 618 (644)
|.-|+||..|...+...|.++. .+.|.++||||++.+.. =|+++.+.=|++.
T Consensus 533 EF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD~li~vgYg~v~ 588 (593)
T COG2401 533 EFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDTLILVGYGKVP 588 (593)
T ss_pred hhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCceeEEeeccccc
Confidence 9999999999999999999887 68999999999999865 4999988777654
No 407
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.79 E-value=1e-18 Score=165.21 Aligned_cols=135 Identities=24% Similarity=0.317 Sum_probs=100.1
Q ss_pred eEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE-EEecCCCCCcccHHHHHhcCC
Q psy5743 422 SLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG-SVSQEPTLFSGTIYENILYGV 500 (644)
Q Consensus 422 sl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~-~V~Q~~~Lf~gTIreNI~~g~ 500 (644)
++.+.+|..+.|+||+||||||+++.+....-..+|.+.-.. +. +.+ .+++...-|
T Consensus 15 ~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~-~~----------~~g~~~~~~~~~~------------ 71 (162)
T cd03227 15 DVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRS-GV----------KAGCIVAAVSAEL------------ 71 (162)
T ss_pred EEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccC-cc----------cCCCcceeeEEEE------------
Confidence 344455679999999999999999997766655555443311 00 011 011111111
Q ss_pred CCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHcc----CCCEEEeecccCCCCHHH
Q psy5743 501 NDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIK----KSKILLLDEATSALDAEN 576 (644)
Q Consensus 501 ~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~----~p~IliLDEaTSaLD~~~ 576 (644)
.-+. .+||+||+||++|||++.. +|+++++|||++++|++.
T Consensus 72 ------------------------------i~~~-----~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~ 116 (162)
T cd03227 72 ------------------------------IFTR-----LQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRD 116 (162)
T ss_pred ------------------------------ehhe-----eeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHH
Confidence 0000 1199999999999999986 789999999999999999
Q ss_pred HHHHHHHHHHHcC-CceEEEEccCchHHhhcCEEEEEeC
Q psy5743 577 EYLVQSAIEKLIE-GKTVLTIAHRLSTIRKSNQICVLDK 614 (644)
Q Consensus 577 e~~i~~~l~~~~~-~~TvI~IaHrl~~i~~aD~Iivl~~ 614 (644)
...+.+.+.+..+ +.|+|++||+++....+|+++.|+.
T Consensus 117 ~~~l~~~l~~~~~~~~~vii~TH~~~~~~~~d~~~~l~~ 155 (162)
T cd03227 117 GQALAEAILEHLVKGAQVIVITHLPELAELADKLIHIKK 155 (162)
T ss_pred HHHHHHHHHHHHhcCCEEEEEcCCHHHHHhhhhEEEEEE
Confidence 9999999987643 5899999999999999999999974
No 408
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.78 E-value=3.3e-19 Score=183.98 Aligned_cols=189 Identities=25% Similarity=0.370 Sum_probs=131.3
Q ss_pred EEEEEcCCCCCCccccceeEE-EeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEE-----------CCccCCCCCh
Q psy5743 404 NIRFSYPSRPDAVILNDLSLK-IQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILI-----------DGVDIKELDP 471 (644)
Q Consensus 404 ~vsf~Y~~~~~~~vL~~isl~-i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i-----------dg~~i~~~~~ 471 (644)
++.-+|..+. ..|. .|- .++|+.++|+|++|-||||-+|+|.|.+.|+=|+--= .|..++++=.
T Consensus 79 e~vHRYg~Ng--FkL~--~LP~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~ 154 (591)
T COG1245 79 EVVHRYGVNG--FKLY--RLPTPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFK 154 (591)
T ss_pred cceeeccCCc--eEEe--cCCCCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHH
Confidence 5677786432 2233 333 4579999999999999999999999999998775420 1111111100
Q ss_pred H----HHh--cceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChh
Q psy5743 472 M----YLR--SQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGG 545 (644)
Q Consensus 472 ~----~lr--~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGG 545 (644)
+ .+| ..+-||--=|-.+.|+++|=+.--++. ... ++.++.| +++-.+...-..||||
T Consensus 155 ~l~~g~~r~v~K~QYVd~iPk~~KG~v~elLk~~de~------g~~---------devve~l--~L~nvl~r~v~~LSGG 217 (591)
T COG1245 155 KLYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDER------GKF---------DEVVERL--GLENVLDRDVSELSGG 217 (591)
T ss_pred HHHcCCcceecchHHHHHHHHHhcchHHHHHHhhhhc------CcH---------HHHHHHh--cchhhhhhhhhhcCch
Confidence 0 000 012333345667777777776533211 112 2233332 3444555566789999
Q ss_pred HHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC-CceEEEEccCchHHhh-cCEEEEEe
Q psy5743 546 QKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE-GKTVLTIAHRLSTIRK-SNQICVLD 613 (644)
Q Consensus 546 QkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~-~~TvI~IaHrl~~i~~-aD~Iivl~ 613 (644)
+-||+|||-|+.|+++++++|||||-||....-..-+.|+++.+ +++||+|-|+|..+.. +|-|.++-
T Consensus 218 ELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~lsD~vhI~Y 287 (591)
T COG1245 218 ELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDYLSDFVHILY 287 (591)
T ss_pred HHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHHHhhheeEEEe
Confidence 99999999999999999999999999999988888888888877 6999999999999955 78888875
No 409
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.77 E-value=4.1e-18 Score=174.66 Aligned_cols=193 Identities=19% Similarity=0.214 Sum_probs=119.4
Q ss_pred cceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCC-----------------------------------------CCc
Q psy5743 419 NDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDP-----------------------------------------QNG 457 (644)
Q Consensus 419 ~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p-----------------------------------------~~G 457 (644)
++.++++.+| .++|+|||||||||++.+|.-+... ...
T Consensus 13 ~~~~~~~~~~-~~~i~G~NGsGKS~ll~Ai~~~~~~~~~r~~~~~~~i~~~~~~~~v~~~f~~~~~~~~i~~~~~~~~~~ 91 (270)
T cd03242 13 AELELEFEPG-VTVLVGENAQGKTNLLEAISLLATGKSHRTSRDKELIRWGAEEAKISAVLERQGGELALELTIRSGGGR 91 (270)
T ss_pred ceeEEecCCC-eEEEECCCCCCHHHHHHHHHHhccCCCCCCCCHHHHHhcCCCCEEEEEEEEeCCCeEEEEEEEEcCCce
Confidence 4456666665 6889999999999999886533310 111
Q ss_pred EEEECCccCCC-CChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCC--HHHHHHHHHHHhhccchhh---hhcCc
Q psy5743 458 KILIDGVDIKE-LDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVT--KSDIIHAAKEANAYGFVID---FKNGF 531 (644)
Q Consensus 458 ~I~idg~~i~~-~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~--~~~i~~a~~~a~l~~~i~~---lp~Gl 531 (644)
.+++||..++. -+...+-..+.+.|++..|+.++-.+-..|-+.-..... ..+.++..+++ ..-... -|+..
T Consensus 92 ~~~ing~~~~~l~~l~~~l~~i~~~~~~~~l~~~~p~~rr~~lD~~~~~~~~~y~~~~~~~~~~--~~~~~~~~~g~~~d 169 (270)
T cd03242 92 KARLNGIKVRRLSDLLGVLNAVWFAPEDLELVKGSPADRRRFLDRLLGQLEPAYAHVLSEYQKA--LRQRNALLKGPHRD 169 (270)
T ss_pred EEEECCeeccCHHHHhCcCcEEEEecchhhhhcCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HHHHHHHhCCCChh
Confidence 45567766654 222233445667777777885543333333221100011 11111111111 111111 35555
Q ss_pred cccccCCCC----CCChhHHHHHHHHHHH---------ccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEcc
Q psy5743 532 DTIVGERGI----MLSGGQKQRIAIARAL---------IKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAH 598 (644)
Q Consensus 532 ~T~ige~G~----~LSGGQkQRiaLARAl---------l~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaH 598 (644)
+..+.-++. .+|+||+|+++|||++ +++|++++|||||++||+.....+.+.+.+. . .+++++|
T Consensus 170 ~l~~~vd~~~~~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~--~-q~ii~~~ 246 (270)
T cd03242 170 DLLFFLNDKPAADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGR--V-QTFVTTT 246 (270)
T ss_pred heEEEECCEeHHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcC--C-CEEEEeC
Confidence 554443333 4899999999999997 4899999999999999999999999999775 3 4455555
Q ss_pred CchHH-hhc---CEEEEEeCCeE
Q psy5743 599 RLSTI-RKS---NQICVLDKGKI 617 (644)
Q Consensus 599 rl~~i-~~a---D~Iivl~~G~i 617 (644)
....+ ..| ++|+.+++|+|
T Consensus 247 ~~~~~~~~~~~~~~i~~l~~g~i 269 (270)
T cd03242 247 DLADFDALWLRRAQIFRVDAGTL 269 (270)
T ss_pred CchhccchhccCccEEEEeCcEE
Confidence 54444 334 78999999986
No 410
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.74 E-value=6e-18 Score=167.79 Aligned_cols=153 Identities=19% Similarity=0.146 Sum_probs=113.2
Q ss_pred CCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE-EEecCCCCCcccH
Q psy5743 414 DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG-SVSQEPTLFSGTI 492 (644)
Q Consensus 414 ~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~-~V~Q~~~Lf~gTI 492 (644)
...+.+|++++.++|++++|+|||||||||+++.+.- -.+..++| +||.+...+. +
T Consensus 16 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~---------------------~~~la~~g~~vpa~~~~~~--~ 72 (222)
T cd03285 16 VAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGV---------------------IVLMAQIGCFVPCDSADIP--I 72 (222)
T ss_pred CCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHH---------------------HHHHHHhCCCcCcccEEEe--c
Confidence 3578999999999999999999999999999999982 13444666 6666542211 1
Q ss_pred HHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHH--ccCCCEEEeecc--
Q psy5743 493 YENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARAL--IKKSKILLLDEA-- 568 (644)
Q Consensus 493 reNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAl--l~~p~IliLDEa-- 568 (644)
.+.| +..+ |++-.+ ..++|.|++|+..+|+++ ..+|+++|||||
T Consensus 73 ~~~i---------------------------l~~~--~l~d~~---~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~ 120 (222)
T cd03285 73 VDCI---------------------------LARV--GASDSQ---LKGVSTFMAEMLETAAILKSATENSLIIIDELGR 120 (222)
T ss_pred ccee---------------------------Eeee--ccccch---hcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcC
Confidence 1111 1111 111111 357999999999999999 899999999999
Q ss_pred -cCCCCHHHHHHH-HHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEecC
Q psy5743 569 -TSALDAENEYLV-QSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGS 622 (644)
Q Consensus 569 -TSaLD~~~e~~i-~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt 622 (644)
|+++|....... .+.+.+ ..++|+|++||..+..+.||++..+++|++...++
T Consensus 121 gT~~lD~~~~~~~il~~l~~-~~~~~vlisTH~~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 121 GTSTYDGFGLAWAIAEYIAT-QIKCFCLFATHFHELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred CCChHHHHHHHHHHHHHHHh-cCCCeEEEEechHHHHHHhhcCCCeEEEEEEEEEe
Confidence 999999855433 255543 24789999999877778899999999999976653
No 411
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.73 E-value=2.3e-18 Score=148.08 Aligned_cols=76 Identities=22% Similarity=0.217 Sum_probs=72.3
Q ss_pred CccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHH
Q psy5743 415 AVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYE 494 (644)
Q Consensus 415 ~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIre 494 (644)
.++|++++|++++|+.++|+||||||||||++++. +|++.++|.|+..++.++.++.++++||+ +|.+||||
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~~ti~~ 73 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLEIRLRL 73 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cchhhHHh
Confidence 36899999999999999999999999999999986 89999999999999999999999999999 99999999
Q ss_pred HHhc
Q psy5743 495 NILY 498 (644)
Q Consensus 495 NI~~ 498 (644)
||.+
T Consensus 74 Ni~~ 77 (107)
T cd00820 74 NIFL 77 (107)
T ss_pred hcee
Confidence 9987
No 412
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.72 E-value=1.7e-17 Score=192.79 Aligned_cols=100 Identities=26% Similarity=0.439 Sum_probs=90.4
Q ss_pred Ccccc-ccCCCCCCChhHHHHHHHHHHHccCC--CEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhh
Q psy5743 530 GFDTI-VGERGIMLSGGQKQRIAIARALIKKS--KILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIRK 605 (644)
Q Consensus 530 Gl~T~-ige~G~~LSGGQkQRiaLARAll~~p--~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~~ 605 (644)
|++.. .+.....|||||+||+.|||||..+| ++|||||||++||+++...+.+.|+++. +++|+|+|+|+++.++.
T Consensus 475 gL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~~i~~ 554 (924)
T TIGR00630 475 GLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEETIRA 554 (924)
T ss_pred cccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhh
Confidence 45433 56778899999999999999999986 8999999999999999999999998875 47899999999999999
Q ss_pred cCEEEEE------eCCeEEEecChhHHhcC
Q psy5743 606 SNQICVL------DKGKIVEIGSYAHLIKN 629 (644)
Q Consensus 606 aD~Iivl------~~G~ive~Gt~~eLl~~ 629 (644)
||+|++| ++|+|++.|+++++...
T Consensus 555 aD~vi~LgpgaG~~~G~Iv~~g~~~el~~~ 584 (924)
T TIGR00630 555 ADYVIDIGPGAGIHGGEVVASGTPEEILAN 584 (924)
T ss_pred CCEEEEecccccCCCCEEeeccCHHHHhcC
Confidence 9999999 89999999999998643
No 413
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.70 E-value=2e-17 Score=161.36 Aligned_cols=138 Identities=15% Similarity=0.144 Sum_probs=94.6
Q ss_pred CccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCc-ccHH
Q psy5743 415 AVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFS-GTIY 493 (644)
Q Consensus 415 ~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~-gTIr 493 (644)
++|++|++++. |+.++|+||||||||||++.+.|... +..+|.++..- .++.|...+|. -|++
T Consensus 14 ~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~-----l~~~G~~v~a~---------~~~~q~~~l~~~~~~~ 77 (199)
T cd03283 14 KRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI-----LAQAGAPVCAS---------SFELPPVKIFTSIRVS 77 (199)
T ss_pred CeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH-----HHHcCCEEecC---------ccCcccceEEEeccch
Confidence 46788887764 79999999999999999999987543 22356555331 25667555554 6899
Q ss_pred HHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCC
Q psy5743 494 ENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALD 573 (644)
Q Consensus 494 eNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD 573 (644)
||+.++.. ...+++.++.+ .++.+. .++|+++|+||||+++|
T Consensus 78 d~l~~~~s----~~~~e~~~~~~------iL~~~~----------------------------~~~p~llllDEp~~glD 119 (199)
T cd03283 78 DDLRDGIS----YFYAELRRLKE------IVEKAK----------------------------KGEPVLFLLDEIFKGTN 119 (199)
T ss_pred hccccccC----hHHHHHHHHHH------HHHhcc----------------------------CCCCeEEEEecccCCCC
Confidence 99988742 12233222211 111111 07999999999999999
Q ss_pred HHHHHHHHH-HHHHHc-CCceEEEEccCchHHhhc
Q psy5743 574 AENEYLVQS-AIEKLI-EGKTVLTIAHRLSTIRKS 606 (644)
Q Consensus 574 ~~~e~~i~~-~l~~~~-~~~TvI~IaHrl~~i~~a 606 (644)
+.+...+.. .+.++. ++.|+|++||+++.+...
T Consensus 120 ~~~~~~l~~~ll~~l~~~~~tiiivTH~~~~~~~~ 154 (199)
T cd03283 120 SRERQAASAAVLKFLKNKNTIGIISTHDLELADLL 154 (199)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEEcCcHHHHHhh
Confidence 997765543 344432 378999999999887655
No 414
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.69 E-value=2.8e-17 Score=161.34 Aligned_cols=153 Identities=17% Similarity=0.146 Sum_probs=102.4
Q ss_pred eeEEEeCCCEEEEECCCCCcHHHHHHHHhcc-CCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcC
Q psy5743 421 LSLKIQSGSMTSVIGSSGSGKSTLAMLLLRL-YDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYG 499 (644)
Q Consensus 421 isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~-~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g 499 (644)
.++++.+|++++|+||+|||||||++.+.+. +.+..|...-. .+..+++..|.-.
T Consensus 22 ~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~-----------~~~~i~~~dqi~~------------- 77 (202)
T cd03243 22 NDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPA-----------ESASIPLVDRIFT------------- 77 (202)
T ss_pred eeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccc-----------cccccCCcCEEEE-------------
Confidence 3555668999999999999999999999943 22222211100 0112333222111
Q ss_pred CCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHH
Q psy5743 500 VNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYL 579 (644)
Q Consensus 500 ~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~ 579 (644)
.++.. + .+-++-..+|++++| +..+-+...+|+++||||||+++|+.....
T Consensus 78 --------------------------~~~~~-d-~i~~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~ 128 (202)
T cd03243 78 --------------------------RIGAE-D-SISDGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLA 128 (202)
T ss_pred --------------------------EecCc-c-cccCCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHH
Confidence 11100 0 112223455666665 777778889999999999999999987666
Q ss_pred HHHH-HHHHc-CCceEEEEccCchHHhhcCEEEEEeCCeEEEecChhHH
Q psy5743 580 VQSA-IEKLI-EGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHL 626 (644)
Q Consensus 580 i~~~-l~~~~-~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eL 626 (644)
+... ++.+. .+.++|++||+.+.++.+|++..+++|++.+.++.+++
T Consensus 129 l~~~ll~~l~~~~~~vi~~tH~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 177 (202)
T cd03243 129 IAYAVLEHLLEKGCRTLFATHFHELADLPEQVPGVKNLHMEELITTGGL 177 (202)
T ss_pred HHHHHHHHHHhcCCeEEEECChHHHHHHhhcCCCeEEEEEEEEecCCee
Confidence 5544 33332 37899999999999999999999999999988875444
No 415
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.69 E-value=1.1e-16 Score=186.57 Aligned_cols=100 Identities=27% Similarity=0.462 Sum_probs=90.6
Q ss_pred Ccccc-ccCCCCCCChhHHHHHHHHHHHccCC--CEEEeecccCCCCHHHHHHHHHHHHHHcC-CceEEEEccCchHHhh
Q psy5743 530 GFDTI-VGERGIMLSGGQKQRIAIARALIKKS--KILLLDEATSALDAENEYLVQSAIEKLIE-GKTVLTIAHRLSTIRK 605 (644)
Q Consensus 530 Gl~T~-ige~G~~LSGGQkQRiaLARAll~~p--~IliLDEaTSaLD~~~e~~i~~~l~~~~~-~~TvI~IaHrl~~i~~ 605 (644)
|++.. ....-..|||||||||+|||||..+| ++|||||||++||++....+.+.|+++.+ +.|+|+|+|+++.+..
T Consensus 477 GL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~~i~~ 556 (943)
T PRK00349 477 GLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDEDTIRA 556 (943)
T ss_pred ccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh
Confidence 55433 46677899999999999999999997 99999999999999999999999988754 7899999999999999
Q ss_pred cCEEEEE------eCCeEEEecChhHHhcC
Q psy5743 606 SNQICVL------DKGKIVEIGSYAHLIKN 629 (644)
Q Consensus 606 aD~Iivl------~~G~ive~Gt~~eLl~~ 629 (644)
||+|++| ++|+|+..|+++++++.
T Consensus 557 aD~vi~LgpgaG~~~G~iv~~g~~~e~~~~ 586 (943)
T PRK00349 557 ADYIVDIGPGAGVHGGEVVASGTPEEIMKN 586 (943)
T ss_pred CCEEEEeccccCCCCCEEeeccCHHHHhcC
Confidence 9999999 99999999999998754
No 416
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.69 E-value=9.6e-17 Score=196.96 Aligned_cols=134 Identities=28% Similarity=0.347 Sum_probs=112.9
Q ss_pred CCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHH------HHHHHHHHccCC
Q psy5743 487 LFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQ------RIAIARALIKKS 560 (644)
Q Consensus 487 Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQ------RiaLARAll~~p 560 (644)
.|+||++|||.+ +|+ ++++ +.+++.++.++|+..+|.| ||.++.+| .||||||| |++||||++.+|
T Consensus 1153 ~~~~~~~~~i~~-~~~---~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~lS~Gq~~~~~~~~rlala~~~~~~~ 1224 (1311)
T TIGR00606 1153 TYRGQDIEYIEI-RSD---ADEN--VSASDKRRNYNYRVVMLKG-DTALDMRG-RCSAGQKVLASLIIRLALAETFCLNC 1224 (1311)
T ss_pred HcCccHHHHhhc-CCC---CChH--HHHHHHcCchHHHhccCCC-CeecCCCC-CCchhhhhHhhHhHHHHHHHHHhcCC
Confidence 589999999999 776 5666 7899999999999999999 99999887 89999999 999999999999
Q ss_pred CEEEeecccCCCCHHHHHHHHHHHHHHc------CCceEEEEccCchHHh------hcCEEEEEeC----CeEEEecChh
Q psy5743 561 KILLLDEATSALDAENEYLVQSAIEKLI------EGKTVLTIAHRLSTIR------KSNQICVLDK----GKIVEIGSYA 624 (644)
Q Consensus 561 ~IliLDEaTSaLD~~~e~~i~~~l~~~~------~~~TvI~IaHrl~~i~------~aD~Iivl~~----G~ive~Gt~~ 624 (644)
++|+|||||++||+.+...+.+.|.++. .+.|+|+|||++..+. .+|+.|.+.. -.+++.-+|+
T Consensus 1225 ~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1304 (1311)
T TIGR00606 1225 GIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVELLGRSEYVEKFYRLKKNEDQCSEIVKCSPS 1304 (1311)
T ss_pred CEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHHHHhhccccceeeeeeeccccCceeEeeCCc
Confidence 9999999999999999999998887763 3679999999999876 4677776642 1334444555
Q ss_pred HHhc
Q psy5743 625 HLIK 628 (644)
Q Consensus 625 eLl~ 628 (644)
.+++
T Consensus 1305 ~~~~ 1308 (1311)
T TIGR00606 1305 SLGK 1308 (1311)
T ss_pred cccc
Confidence 5443
No 417
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.68 E-value=1.6e-16 Score=161.17 Aligned_cols=142 Identities=18% Similarity=0.259 Sum_probs=107.0
Q ss_pred CEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCC-hHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCC
Q psy5743 429 SMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELD-PMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVT 507 (644)
Q Consensus 429 ~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~-~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~ 507 (644)
+.++|+||+|||||||++.|+|++.|.+|+|.++|+++..++ ..+++..++++||...--.-++.||. |
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~----~------ 181 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGC----P------ 181 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccc----h------
Confidence 689999999999999999999999999999999999998875 67888889999997533223444442 1
Q ss_pred HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHH
Q psy5743 508 KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKL 587 (644)
Q Consensus 508 ~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~ 587 (644)
+..+ -..++|+ .+|+++++|||++. ..+.+.+..+
T Consensus 182 --------k~~~-----------------------------~~~~i~~--~~P~villDE~~~~------e~~~~l~~~~ 216 (270)
T TIGR02858 182 --------KAEG-----------------------------MMMLIRS--MSPDVIVVDEIGRE------EDVEALLEAL 216 (270)
T ss_pred --------HHHH-----------------------------HHHHHHh--CCCCEEEEeCCCcH------HHHHHHHHHH
Confidence 1111 1556666 49999999999742 2333344444
Q ss_pred cCCceEEEEccCchH--H------------hhcCEEEEEeCCeEEEecChhHHh
Q psy5743 588 IEGKTVLTIAHRLST--I------------RKSNQICVLDKGKIVEIGSYAHLI 627 (644)
Q Consensus 588 ~~~~TvI~IaHrl~~--i------------~~aD~Iivl~~G~ive~Gt~~eLl 627 (644)
..+.|+|+++|..+. + ..+|++++|++|+ ..|+.+++.
T Consensus 217 ~~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~i~ 268 (270)
T TIGR02858 217 HAGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEAVY 268 (270)
T ss_pred hCCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceeecc
Confidence 468999999997666 3 4479999999887 677776654
No 418
>PRK00064 recF recombination protein F; Reviewed
Probab=99.60 E-value=9.8e-15 Score=155.48 Aligned_cols=76 Identities=28% Similarity=0.400 Sum_probs=66.6
Q ss_pred CCCChhHHHHHHHHHHHc---------cCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhh---cC
Q psy5743 540 IMLSGGQKQRIAIARALI---------KKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRK---SN 607 (644)
Q Consensus 540 ~~LSGGQkQRiaLARAll---------~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~---aD 607 (644)
..+|+||+|+++||+++. ++|+|++||||+|.||+.....+.+.+.+. +..+++.||.+..+.. .+
T Consensus 272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~--~~qv~it~~~~~~~~~~~~~~ 349 (361)
T PRK00064 272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL--GAQVFITTTDLEDLADLLENA 349 (361)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc--CCEEEEEcCChhhhhhhhccC
Confidence 578999999999999884 899999999999999999999999888764 5688999998876544 56
Q ss_pred EEEEEeCCeE
Q psy5743 608 QICVLDKGKI 617 (644)
Q Consensus 608 ~Iivl~~G~i 617 (644)
+++.|++|+|
T Consensus 350 ~i~~v~~G~i 359 (361)
T PRK00064 350 KIFHVEQGKI 359 (361)
T ss_pred cEEEEeCCEE
Confidence 8999999997
No 419
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.59 E-value=4.4e-15 Score=145.18 Aligned_cols=141 Identities=21% Similarity=0.240 Sum_probs=97.0
Q ss_pred CCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEE-EecCCCCCcccH
Q psy5743 414 DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGS-VSQEPTLFSGTI 492 (644)
Q Consensus 414 ~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~-V~Q~~~Lf~gTI 492 (644)
++++.+|+++++++|+.++|+|||||||||+++.+.+.. +..++|. ||-.. ..-++
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~---------------------~la~~G~~vpa~~--~~l~~ 71 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLA---------------------IMAQIGCFVPAEY--ATLPI 71 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHH---------------------HHHHcCCCcchhh--cCccC
Confidence 457899999999999999999999999999999998773 2223332 21111 11134
Q ss_pred HHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCC
Q psy5743 493 YENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSAL 572 (644)
Q Consensus 493 reNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaL 572 (644)
.|||... + +.+..+.++.+.+|+|++|+ ..+-++..+|++++||||++++
T Consensus 72 ~d~I~~~---------------------------~--~~~d~~~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt 121 (204)
T cd03282 72 FNRLLSR---------------------------L--SNDDSMERNLSTFASEMSET-AYILDYADGDSLVLIDELGRGT 121 (204)
T ss_pred hhheeEe---------------------------c--CCccccchhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCC
Confidence 4444221 1 12223455667899999976 4555577899999999999999
Q ss_pred CHHHHHHHH-HHHHHHc-CCceEEEEccCchHHhhcC
Q psy5743 573 DAENEYLVQ-SAIEKLI-EGKTVLTIAHRLSTIRKSN 607 (644)
Q Consensus 573 D~~~e~~i~-~~l~~~~-~~~TvI~IaHrl~~i~~aD 607 (644)
|+.....+. +.++.+. .+.++|++||..+.+..++
T Consensus 122 ~~~~~~~l~~~il~~l~~~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 122 SSADGFAISLAILECLIKKESTVFFATHFRDIAAILG 158 (204)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHHhh
Confidence 996533332 2333332 3789999999999886654
No 420
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.57 E-value=9.2e-15 Score=145.48 Aligned_cols=73 Identities=26% Similarity=0.407 Sum_probs=60.3
Q ss_pred CCChhHHHHHHHH----HHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEe
Q psy5743 541 MLSGGQKQRIAIA----RALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLD 613 (644)
Q Consensus 541 ~LSGGQkQRiaLA----RAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~ 613 (644)
.||||||-+++|| ..-+.++|+++|||+.++||..+...+.+.|.+..++.-+|++||+..+...||+.+.+.
T Consensus 136 ~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~~a~~~~~v~ 212 (220)
T PF02463_consen 136 FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFEDADKLIGVT 212 (220)
T ss_dssp GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHTT-SEEEEEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 8999999999997 333678999999999999999999999999999988889999999999999999998864
No 421
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.56 E-value=9.7e-15 Score=144.33 Aligned_cols=151 Identities=18% Similarity=0.230 Sum_probs=101.6
Q ss_pred CccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCc-ccHH
Q psy5743 415 AVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFS-GTIY 493 (644)
Q Consensus 415 ~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~-gTIr 493 (644)
..+.+|+++++++ ++++|+|||||||||+++.+.+..-. |+ .|.++ . ..+..++++.| +|. -+++
T Consensus 18 ~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l--~~---~g~~v---p--~~~~~i~~~~~---i~~~~~~~ 83 (216)
T cd03284 18 PFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALL--AQ---IGSFV---P--ASKAEIGVVDR---IFTRIGAS 83 (216)
T ss_pred ceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHH--hc---cCCee---c--cccceecceee---EeccCCch
Confidence 4678899999887 99999999999999999999764311 10 11111 0 11234555544 222 1333
Q ss_pred HHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHH----HHHHHHH--ccCCCEEEeec
Q psy5743 494 ENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQR----IAIARAL--IKKSKILLLDE 567 (644)
Q Consensus 494 eNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQR----iaLARAl--l~~p~IliLDE 567 (644)
||+ |+||.++ ..+++++ ..+|++++|||
T Consensus 84 ~~l----------------------------------------------s~g~s~f~~e~~~l~~~l~~~~~~~llllDE 117 (216)
T cd03284 84 DDL----------------------------------------------AGGRSTFMVEMVETANILNNATERSLVLLDE 117 (216)
T ss_pred hhh----------------------------------------------ccCcchHHHHHHHHHHHHHhCCCCeEEEEec
Confidence 443 3333332 3455555 36999999999
Q ss_pred c---cCCCCHHH-HHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEecChhHH
Q psy5743 568 A---TSALDAEN-EYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHL 626 (644)
Q Consensus 568 a---TSaLD~~~-e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eL 626 (644)
| |+++|... ...+.+.+.+. .+.|+|++||..+....+|++..+++|++...++-+++
T Consensus 118 p~~gt~~lD~~~~~~~il~~l~~~-~~~~vi~~TH~~~l~~l~~~~~~v~~~~~~~~~~~~~l 179 (216)
T cd03284 118 IGRGTSTYDGLSIAWAIVEYLHEK-IGAKTLFATHYHELTELEGKLPRVKNFHVAVKEKGGGV 179 (216)
T ss_pred CCCCCChHHHHHHHHHHHHHHHhc-cCCcEEEEeCcHHHHHHhhcCCCeEEEEEEEEeeCCeE
Confidence 9 99999864 24455555442 37899999999988888998888888888776655554
No 422
>KOG0066|consensus
Probab=99.55 E-value=6.6e-15 Score=151.01 Aligned_cols=198 Identities=25% Similarity=0.366 Sum_probs=137.7
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhc--cCCCCCcEEEECCccCCCCChHHHhc
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLR--LYDPQNGKILIDGVDIKELDPMYLRS 476 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g--~~~p~~G~I~idg~~i~~~~~~~lr~ 476 (644)
+|.++|.+.+-. .+..+-|-||+|-.|...++|||+|-|||||++-|.- +--|..=.|+++.+.+
T Consensus 264 DIKiEnF~ISA~---Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEv---------- 330 (807)
T KOG0066|consen 264 DIKIENFDISAQ---GKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEV---------- 330 (807)
T ss_pred cceeeeeeeecc---cceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeee----------
Confidence 488888888764 3467899999999999999999999999999998864 3334444455444333
Q ss_pred ceEEEecCCCCCcccHHHHHh---------------------cCCCCCCCCCHHHHHHH---HHHHhhccchh---h-h-
Q psy5743 477 QIGSVSQEPTLFSGTIYENIL---------------------YGVNDSSSVTKSDIIHA---AKEANAYGFVI---D-F- 527 (644)
Q Consensus 477 ~i~~V~Q~~~Lf~gTIreNI~---------------------~g~~~~~~~~~~~i~~a---~~~a~l~~~i~---~-l- 527 (644)
.-=+.|--+.+. -|+. --.|++.++ ++..|.+.--. + |
T Consensus 331 ---------vad~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~----taaErl~~v~~ELraiGA~sAEarARRILA 397 (807)
T KOG0066|consen 331 ---------VADSTSAIDTVLKADKKRLALLEEEAKLMSQIEEGDT----TAAERLKEVADELRAIGADSAEARARRILA 397 (807)
T ss_pred ---------eecCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCch----HHHHHHHHHHHHHHHhccccchhHHHHHHh
Confidence 322222222222 1211 112222222 23333221100 0 0
Q ss_pred hcCccccccCCC-CCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhh-
Q psy5743 528 KNGFDTIVGERG-IMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRK- 605 (644)
Q Consensus 528 p~Gl~T~ige~G-~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~- 605 (644)
--|++-..-++. ..+|||=|-|++|||||+-.|-+|.|||||.+||-..--.+-+.|..+ .+|.++|+|+-.++.+
T Consensus 398 GLGFskEMQ~rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgW--kKTLLIVSHDQgFLD~V 475 (807)
T KOG0066|consen 398 GLGFSKEMQERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQGFLDSV 475 (807)
T ss_pred hcCCChhHhcCCccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhh--hheeEEEecccchHHHH
Confidence 126666666665 479999999999999999999999999999999998777777777777 6899999999999955
Q ss_pred cCEEEEEeCCeEE-EecChh
Q psy5743 606 SNQICVLDKGKIV-EIGSYA 624 (644)
Q Consensus 606 aD~Iivl~~G~iv-e~Gt~~ 624 (644)
|..|+.+|+-+.. ..|+|.
T Consensus 476 CtdIIHLD~qkLhyYrGNY~ 495 (807)
T KOG0066|consen 476 CTDIIHLDNQKLHYYRGNYT 495 (807)
T ss_pred HHHHhhhhhhhhhhhcchHH
Confidence 8999999988775 556664
No 423
>KOG0063|consensus
Probab=99.54 E-value=3.2e-14 Score=146.09 Aligned_cols=196 Identities=24% Similarity=0.376 Sum_probs=147.7
Q ss_pred EEEcCCCCCCccccceeEEEeCCC-----EEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEE
Q psy5743 406 RFSYPSRPDAVILNDLSLKIQSGS-----MTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGS 480 (644)
Q Consensus 406 sf~Y~~~~~~~vL~~isl~i~~G~-----~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~ 480 (644)
.|+||+ .+..+.+..|.|+.|+ .+...|++|-||||+++.++|..+|++| .++..+ .++|
T Consensus 342 ~y~Yp~--m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~------~e~p~l-------nVSy 406 (592)
T KOG0063|consen 342 RYSYPK--MKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEG------GEIPVL-------NVSY 406 (592)
T ss_pred eeccCc--ceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCcc------Cccccc-------ceec
Confidence 478885 4567899999999986 5788999999999999999999999865 233333 5778
Q ss_pred EecCCC-CCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccC
Q psy5743 481 VSQEPT-LFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKK 559 (644)
Q Consensus 481 V~Q~~~-Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~ 559 (644)
=||... =|.||+|.=+ .++++.+...-.+-..+++ |-..+..++..-.+||||+.||+|||=+|=+.
T Consensus 407 kpqkispK~~~tvR~ll-----------~~kIr~ay~~pqF~~dvmk-pL~ie~i~dqevq~lSggelQRval~KOGGKp 474 (592)
T KOG0063|consen 407 KPQKISPKREGTVRQLL-----------HTKIRDAYMHPQFVNDVMK-PLQIENIIDQEVQGLSGGELQRVALALCLGKP 474 (592)
T ss_pred cccccCccccchHHHHH-----------HHHhHhhhcCHHHHHhhhh-hhhHHHHHhHHhhcCCchhhHHHHHHHhcCCC
Confidence 888643 6889998766 3455555544444333433 55566667778889999999999999999999
Q ss_pred CCEEEeecccCCCCHHHHHHHHHHHHHH--cCCceEEEEccCchHH-hhcCEEEEEeCC--eEEEecChhHHhc
Q psy5743 560 SKILLLDEATSALDAENEYLVQSAIEKL--IEGKTVLTIAHRLSTI-RKSNQICVLDKG--KIVEIGSYAHLIK 628 (644)
Q Consensus 560 p~IliLDEaTSaLD~~~e~~i~~~l~~~--~~~~TvI~IaHrl~~i-~~aD~Iivl~~G--~ive~Gt~~eLl~ 628 (644)
+++++.|||.+-||++....--..+++. -.++|-.+|-|.+-.. =.|||++|.+.- ...-.-.++.|++
T Consensus 475 AdvYliDEpsAylDSeQRi~AskvikRfilhakktafvVEhdfImaTYladrvivf~G~ps~~~~a~~p~~Ll~ 548 (592)
T KOG0063|consen 475 ADVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVFEGQPSVNTVANSPQSLLA 548 (592)
T ss_pred CceEEecCchhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHhhcceeEEEecCcccccccCChhHHHH
Confidence 9999999999999999776666666663 3589999999997655 458999999742 2222334455543
No 424
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.54 E-value=1.1e-14 Score=165.52 Aligned_cols=107 Identities=27% Similarity=0.434 Sum_probs=92.6
Q ss_pred HHHHHHHHHHhhccchhhhhcCccccccCCC------CCCChhHHHHHHHHHHHc----------cCCCEEEeeccc-CC
Q psy5743 509 SDIIHAAKEANAYGFVIDFKNGFDTIVGERG------IMLSGGQKQRIAIARALI----------KKSKILLLDEAT-SA 571 (644)
Q Consensus 509 ~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G------~~LSGGQkQRiaLARAll----------~~p~IliLDEaT-Sa 571 (644)
+.+.+.++..+. ++...+|+++++.+++.| ..||||||||++||||+. .+|+++|||||| ++
T Consensus 431 ~~~~~~L~~l~~-~~~~~~~~~~~~~~~~~g~~~~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ 509 (562)
T PHA02562 431 KQINHYLQIMEA-DYNFTLDEEFNETIKSRGREDFSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGA 509 (562)
T ss_pred HHHHHHHHHhhe-eEEEEechhhhhHHhcCCCCccChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcc
Confidence 345555555553 556678999999999999 789999999999999987 599999999998 78
Q ss_pred CCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeC-CeE
Q psy5743 572 LDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDK-GKI 617 (644)
Q Consensus 572 LD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~-G~i 617 (644)
||+.+...+.+.|.++ ++.|+|+|||+++....||++++|++ |+.
T Consensus 510 ld~~~~~~~~~~l~~~-~~~~iiiish~~~~~~~~d~~~~l~~~~~~ 555 (562)
T PHA02562 510 LDAEGTKALLSILDSL-KDTNVFVISHKDHDPQKFDRHLKMEKVGRF 555 (562)
T ss_pred cchhHHHHHHHHHHhC-CCCeEEEEECchhchhhhhcEEEEEEECCe
Confidence 9999999999999988 78999999999999999999999986 543
No 425
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.45 E-value=1.3e-12 Score=141.05 Aligned_cols=177 Identities=20% Similarity=0.260 Sum_probs=127.4
Q ss_pred CccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEEC---CccCCC-----CChHHHhcceEEEecCCC
Q psy5743 415 AVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILID---GVDIKE-----LDPMYLRSQIGSVSQEPT 486 (644)
Q Consensus 415 ~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~id---g~~i~~-----~~~~~lr~~i~~V~Q~~~ 486 (644)
..+++++ +++++|++++|+|+||+|||||+++|+|+++|+.|.|.+. |.++.+ ++...+++.|.+|.+...
T Consensus 146 ~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~ 224 (438)
T PRK07721 146 VRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQ 224 (438)
T ss_pred hhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCC
Confidence 4579999 9999999999999999999999999999999999999995 444453 466678888999976422
Q ss_pred CCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCcccccc-CCCCCCChhHHHH-HHHHHHHccCCCEEE
Q psy5743 487 LFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVG-ERGIMLSGGQKQR-IAIARALIKKSKILL 564 (644)
Q Consensus 487 Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ig-e~G~~LSGGQkQR-iaLARAll~~p~Ili 564 (644)
..-+++..+.-...+.|+..+ +|.|-.+- +.=.++- |.|| |+++ ..+||
T Consensus 225 -------------------~~~~r~~~~~~a~~iAEyfr~--~g~~Vll~~Dsltr~A--~A~rEisl~---~ge~P--- 275 (438)
T PRK07721 225 -------------------PALMRIKGAYTATAIAEYFRD--QGLNVMLMMDSVTRVA--MAQREIGLA---VGEPP--- 275 (438)
T ss_pred -------------------CHHHHHHHHHHHHHHHHHHHH--CCCcEEEEEeChHHHH--HHHHHHHHh---cCCCC---
Confidence 224444444444445555553 36665432 2211111 1111 1111 23333
Q ss_pred eecccCCCCHHHHHHHHHHHHHHc---CCc-----eEEEEccCchHHhhcCEEEEEeCCeEEEecChhH
Q psy5743 565 LDEATSALDAENEYLVQSAIEKLI---EGK-----TVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAH 625 (644)
Q Consensus 565 LDEaTSaLD~~~e~~i~~~l~~~~---~~~-----TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~e 625 (644)
.|+++|+..-..+.+.+++.. ++. ||++.+|+++. ..||++.++.+|+|+.+|+-.+
T Consensus 276 ---~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e-~i~d~v~~i~dG~Ivls~~la~ 340 (438)
T PRK07721 276 ---TTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE-PIADTVRGILDGHFVLDRQLAN 340 (438)
T ss_pred ---ccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc-hhhhhEEEecCEEEEEeccHHH
Confidence 589999999999988888875 354 99999999996 8899999999999998887544
No 426
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.40 E-value=2.2e-12 Score=127.33 Aligned_cols=136 Identities=21% Similarity=0.236 Sum_probs=92.5
Q ss_pred ccccceeEEEeCCCEEEEECCCCCcHHHHHHHHh--ccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCc--cc
Q psy5743 416 VILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLL--RLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFS--GT 491 (644)
Q Consensus 416 ~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~--g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~--gT 491 (644)
.|-.|+++.=..+.+++|+||+|+|||||++.+. +.+ +..|...... ...++|..|.-.-+. +|
T Consensus 17 ~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~-----------~~~~~~~d~i~~~l~~~~s 84 (213)
T cd03281 17 FVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPAD-----------SATIGLVDKIFTRMSSRES 84 (213)
T ss_pred eEcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcC-----------CcEEeeeeeeeeeeCCccC
Confidence 4555666542223799999999999999999998 434 5667665443 125677777533221 11
Q ss_pred HHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCC
Q psy5743 492 IYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSA 571 (644)
Q Consensus 492 IreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSa 571 (644)
+.++ +-|. --+-||+++|+++..+|++++||||+++
T Consensus 85 i~~~-----------------------------------~S~f---------~~el~~l~~~l~~~~~~slvllDE~~~g 120 (213)
T cd03281 85 VSSG-----------------------------------QSAF---------MIDLYQVSKALRLATRRSLVLIDEFGKG 120 (213)
T ss_pred hhhc-----------------------------------cchH---------HHHHHHHHHHHHhCCCCcEEEeccccCC
Confidence 1111 1111 3356999999999999999999999999
Q ss_pred CCHHH-HHHHHHHHHHHcC----CceEEEEccCchHHhhcC
Q psy5743 572 LDAEN-EYLVQSAIEKLIE----GKTVLTIAHRLSTIRKSN 607 (644)
Q Consensus 572 LD~~~-e~~i~~~l~~~~~----~~TvI~IaHrl~~i~~aD 607 (644)
+|+.. .....+.++++.+ +.++|++||.++.+....
T Consensus 121 td~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~~ 161 (213)
T cd03281 121 TDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRSL 161 (213)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhhh
Confidence 99864 4444455666543 248999999999987653
No 427
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.38 E-value=3.9e-13 Score=129.92 Aligned_cols=71 Identities=18% Similarity=0.215 Sum_probs=54.1
Q ss_pred ccCCCCCCChhHHHHHHHHHHHcc--CCCEEEeecccCCCCHHHHHHHHHH-HHHHc--CCceEEEEccCchHHhhcCE
Q psy5743 535 VGERGIMLSGGQKQRIAIARALIK--KSKILLLDEATSALDAENEYLVQSA-IEKLI--EGKTVLTIAHRLSTIRKSNQ 608 (644)
Q Consensus 535 ige~G~~LSGGQkQRiaLARAll~--~p~IliLDEaTSaLD~~~e~~i~~~-l~~~~--~~~TvI~IaHrl~~i~~aD~ 608 (644)
+.++-+.+|+|++| +++++.. +|+++|+||||+++|+.....+... ++.+. .+.++|++||..+..+.+|+
T Consensus 55 ~~~~~s~fs~~~~~---l~~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~~~~~ 130 (185)
T smart00534 55 LAQGLSTFMVEMKE---TANILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTKLADE 130 (185)
T ss_pred hhccccHHHHHHHH---HHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHHhhc
Confidence 35556678888887 5555555 9999999999999999966665444 44443 26899999999988777875
No 428
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.37 E-value=5e-13 Score=132.49 Aligned_cols=44 Identities=14% Similarity=0.190 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHHccCCCEEEeeccc-----CCCCHHHHHHHHHHHHHHc
Q psy5743 545 GQKQRIAIARALIKKSKILLLDEAT-----SALDAENEYLVQSAIEKLI 588 (644)
Q Consensus 545 GQkQRiaLARAll~~p~IliLDEaT-----SaLD~~~e~~i~~~l~~~~ 588 (644)
-|+|++.|||+++.+|+++++|||| ++||+.+.+.+.+.++++.
T Consensus 156 v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~ 204 (215)
T PTZ00132 156 FEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAA 204 (215)
T ss_pred HHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHh
Confidence 3999999999999999999999999 9999999999999998863
No 429
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.36 E-value=4.5e-12 Score=146.36 Aligned_cols=150 Identities=19% Similarity=0.239 Sum_probs=99.8
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCC-CEEEEECCCCCcHHHHHHHHhcc-CCCCCcEEEECCccCCCCChHHHhc
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSG-SMTSVIGSSGSGKSTLAMLLLRL-YDPQNGKILIDGVDIKELDPMYLRS 476 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G-~~vaIvG~SGsGKSTLl~lL~g~-~~p~~G~I~idg~~i~~~~~~~lr~ 476 (644)
.+.++++..-+-.. .++ -.+|+++.+| +.++|+||||+|||||+|.+.|. +.+..|.
T Consensus 295 ~i~l~~~rhPll~~-~~~--vp~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~------------------ 353 (771)
T TIGR01069 295 KIILENARHPLLKE-PKV--VPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSGI------------------ 353 (771)
T ss_pred CEEEccccCceecC-Cce--EeceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhCC------------------
Confidence 57777775432211 111 1378888877 99999999999999999999987 3343331
Q ss_pred ceEEEecCCC-CCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHH
Q psy5743 477 QIGSVSQEPT-LFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARA 555 (644)
Q Consensus 477 ~i~~V~Q~~~-Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARA 555 (644)
+||.... .+ .+.+++... ..+ +-.+.++-+.+|+|++|+..++++
T Consensus 354 ---~Vpa~~~~~~--~~~d~i~~~------i~~-----------------------~~si~~~LStfS~~m~~~~~il~~ 399 (771)
T TIGR01069 354 ---PIPANEHSEI--PYFEEIFAD------IGD-----------------------EQSIEQNLSTFSGHMKNISAILSK 399 (771)
T ss_pred ---CccCCccccc--cchhheeee------cCh-----------------------HhHHhhhhhHHHHHHHHHHHHHHh
Confidence 4444332 11 122232111 111 011234456799999999999998
Q ss_pred HccCCCEEEeecccCCCCHHHHHHHHH-HHHHHc-CCceEEEEccCchHHh
Q psy5743 556 LIKKSKILLLDEATSALDAENEYLVQS-AIEKLI-EGKTVLTIAHRLSTIR 604 (644)
Q Consensus 556 ll~~p~IliLDEaTSaLD~~~e~~i~~-~l~~~~-~~~TvI~IaHrl~~i~ 604 (644)
+ .+|+++|||||++++|+..-..+.. .+..+. .+.++|++||..+...
T Consensus 400 ~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~~ 449 (771)
T TIGR01069 400 T-TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKELKA 449 (771)
T ss_pred c-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHH
Confidence 7 7899999999999999997776643 344432 4789999999987643
No 430
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.36 E-value=1.8e-12 Score=146.38 Aligned_cols=78 Identities=19% Similarity=0.317 Sum_probs=72.9
Q ss_pred CCCCChhHHHHHHHHHHHccC----CCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeC
Q psy5743 539 GIMLSGGQKQRIAIARALIKK----SKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDK 614 (644)
Q Consensus 539 G~~LSGGQkQRiaLARAll~~----p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~ 614 (644)
...|||||+||++|||++... |+++||||||++||..+...+.+.|.++.+++|+|+|||++..+..||++++|++
T Consensus 438 ~~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~~~~vi~iTH~~~~~~~ad~~~~l~k 517 (563)
T TIGR00634 438 AKVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSERHQVLCVTHLPQVAAHADAHFKVEK 517 (563)
T ss_pred hhhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhcCeEEEEEE
Confidence 357899999999999999875 6999999999999999999999999998889999999999999999999999998
Q ss_pred Ce
Q psy5743 615 GK 616 (644)
Q Consensus 615 G~ 616 (644)
|.
T Consensus 518 ~~ 519 (563)
T TIGR00634 518 EG 519 (563)
T ss_pred cc
Confidence 75
No 431
>PRK13695 putative NTPase; Provisional
Probab=99.35 E-value=1e-12 Score=125.77 Aligned_cols=81 Identities=16% Similarity=0.214 Sum_probs=65.7
Q ss_pred CCCCCCChhHHHHHHHHHHHccCCCEEEeec--ccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeC
Q psy5743 537 ERGIMLSGGQKQRIAIARALIKKSKILLLDE--ATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDK 614 (644)
Q Consensus 537 e~G~~LSGGQkQRiaLARAll~~p~IliLDE--aTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~ 614 (644)
.....+||+++-++.+++..+++|+++++|| |+.++|....+.+.+++ + .++++|+++|.-..-..+|+|..+.+
T Consensus 74 ~~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~~~-~--~~~~~i~v~h~~~~~~~~~~i~~~~~ 150 (174)
T PRK13695 74 KYVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKFVKAVEEVL-D--SEKPVIATLHRRSVHPFVQEIKSRPG 150 (174)
T ss_pred eEEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHHHHH-h--CCCeEEEEECchhhHHHHHHHhccCC
Confidence 3344699999999999999999999999999 55566655555555555 2 37899999999666678999999999
Q ss_pred CeEEEe
Q psy5743 615 GKIVEI 620 (644)
Q Consensus 615 G~ive~ 620 (644)
|+|.+.
T Consensus 151 ~~i~~~ 156 (174)
T PRK13695 151 GRVYEL 156 (174)
T ss_pred cEEEEE
Confidence 999876
No 432
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.35 E-value=6.2e-12 Score=139.07 Aligned_cols=164 Identities=26% Similarity=0.421 Sum_probs=114.6
Q ss_pred CCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHH--H-HHHH-HHHhhccchhhhh
Q psy5743 453 DPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSD--I-IHAA-KEANAYGFVIDFK 528 (644)
Q Consensus 453 ~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~--i-~~a~-~~a~l~~~i~~lp 528 (644)
.|..=.|.++|.+|.++..- +|+|-..|..+- +.++.+ + ...+ +.....+|+.+.-
T Consensus 410 ~~eal~v~i~g~~i~e~~~m------------------si~~~~~f~~~l--~l~~~~~~ia~~ilkei~~RL~fL~~VG 469 (935)
T COG0178 410 KPEALAVKIAGKNIAEISEM------------------SIADALEFFENL--KLSEKEKKIAEPILKEIKERLGFLVDVG 469 (935)
T ss_pred ChhhheeEECCccHHHHhhc------------------cHHHHHHHHHhC--CCchhhHHHHHHHHHHHHHHHHHHHHcC
Confidence 35555788999887766543 344444444321 111222 1 1111 1122234444443
Q ss_pred cCccccccCCCCCCChhHHHHHHHHHHHccC--CCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhh
Q psy5743 529 NGFDTIVGERGIMLSGGQKQRIAIARALIKK--SKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIRK 605 (644)
Q Consensus 529 ~Gl~T~ige~G~~LSGGQkQRiaLARAll~~--p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~~ 605 (644)
-||-|. ......|||||.|||-||+.+-.+ -=+++||||+-+|-+..-.++.+.|+++. .+.|+|+|-|+.++++.
T Consensus 470 L~YLtL-~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDedti~~ 548 (935)
T COG0178 470 LGYLTL-SRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDEDTIRA 548 (935)
T ss_pred cCcccc-cccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCHHHHhh
Confidence 444444 455679999999999999999877 46889999999998886667777777764 38999999999999999
Q ss_pred cCEEEEE------eCCeEEEecChhHHhcCCCcHHHHH
Q psy5743 606 SNQICVL------DKGKIVEIGSYAHLIKNPNSMFNKL 637 (644)
Q Consensus 606 aD~Iivl------~~G~ive~Gt~~eLl~~~~~~y~~l 637 (644)
||+|+-| ..|+|+.+||++|+++++++.=.+.
T Consensus 549 AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~~~~SlTG~Y 586 (935)
T COG0178 549 ADHIIDIGPGAGEHGGEIVAEGTPEELLANPESLTGQY 586 (935)
T ss_pred cCEEEeeCCCCCcCCCEEEEccCHHHHHhCCcchhhHh
Confidence 9999999 4789999999999999765544333
No 433
>PRK10869 recombination and repair protein; Provisional
Probab=99.34 E-value=2.8e-12 Score=143.46 Aligned_cols=77 Identities=23% Similarity=0.334 Sum_probs=72.2
Q ss_pred CCCChhHHHHHHHHHHHcc----CCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCC
Q psy5743 540 IMLSGGQKQRIAIARALIK----KSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKG 615 (644)
Q Consensus 540 ~~LSGGQkQRiaLARAll~----~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G 615 (644)
..+||||+||++|||++.. +|+++||||||++||..+...+.+.|.++.++.|+|+|||.++....||++++++++
T Consensus 429 k~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~~~qvi~iTH~~~~~~~ad~~~~v~k~ 508 (553)
T PRK10869 429 KVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVTHLPQVAGCGHQHFFVSKE 508 (553)
T ss_pred hhCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEecc
Confidence 3699999999999999996 689999999999999999999999999987789999999999999999999999875
Q ss_pred e
Q psy5743 616 K 616 (644)
Q Consensus 616 ~ 616 (644)
.
T Consensus 509 ~ 509 (553)
T PRK10869 509 T 509 (553)
T ss_pred c
Confidence 4
No 434
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.30 E-value=6e-13 Score=151.77 Aligned_cols=196 Identities=13% Similarity=0.039 Sum_probs=132.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHHHHHHH-----HHHHHHHHHHHHH
Q psy5743 225 LISLIIVPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHF-----NAKMDDLFELAKK 299 (644)
Q Consensus 225 li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~-----~~~~~~~~~~~~~ 299 (644)
+++++++++++++.+...+..++.........+..++.+.|.+.++.+||..+.|+.+...| .+...+..+...+
T Consensus 8 ~i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Ev~~~~~tIK~~~~e~~~~~~~~~~~~~~l~~~l~~~~v~ 87 (644)
T PRK10733 8 WLVIAVVLMSVFQSFGPSESNGRKVDYSTFLQEVNQDQVREARINGREINVTKKDSNRYTTYIPVNDPKLLDNLLTKNVK 87 (644)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcccCCHHHHHHHHHcCCeEEEEEeCCEEEEEEcCCceEEEeCCCCCHHHHHHHHHcCCe
Confidence 33333334433333333343444444555555677888999999999999999988777777 5555555555444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 300 EALAKGVFFGFTGLSGNAIILSVLYYGGVMVSYETITVG---NLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWE 376 (644)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~~t~g---~l~a~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~Rl~~ 376 (644)
..........+...+......+++++|+++++.|.++.| .+++|..+...+..| ..+...+.++.....+.+|+.+
T Consensus 88 ~~~~~~~~~~~~~~i~~~~~~~il~ig~~~v~~g~mt~G~~~~l~af~~~~~~~~~~-~~~~~~~~di~g~~~~~~~l~~ 166 (644)
T PRK10733 88 VVGEPPEEPSLLASIFISWFPMLLLIGVWIFFMRQMQGGGGKGAMSFGKSKARMLTE-DQIKTTFADVAGCDEAKEEVAE 166 (644)
T ss_pred EEecCcccchHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCceeEEeccccccccCc-hhhhCcHHHHcCHHHHHHHHHH
Confidence 444333333344444455567788899999999999999 788888888888777 6677777788777778888888
Q ss_pred HHhcCCCccCCCCCccCCCCCccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCC
Q psy5743 377 IMEREPLISTSGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDP 454 (644)
Q Consensus 377 ~l~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p 454 (644)
+.+...+. .. .+++..++++| +.|+||+|+||||+++.+.+....
T Consensus 167 i~~~~~~~----~~---------------------------~~~~~~~~~~g--ill~G~~G~GKt~~~~~~a~~~~~ 211 (644)
T PRK10733 167 LVEYLREP----SR---------------------------FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKV 211 (644)
T ss_pred HHHHhhCH----HH---------------------------HHhcCCCCCCc--EEEECCCCCCHHHHHHHHHHHcCC
Confidence 77642210 00 01112245566 999999999999999999987743
No 435
>PRK14079 recF recombination protein F; Provisional
Probab=99.29 E-value=3.3e-11 Score=127.79 Aligned_cols=76 Identities=17% Similarity=0.218 Sum_probs=62.1
Q ss_pred CCCChhHHHHHHHHHHHc---------cCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEE
Q psy5743 540 IMLSGGQKQRIAIARALI---------KKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQIC 610 (644)
Q Consensus 540 ~~LSGGQkQRiaLARAll---------~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Ii 610 (644)
.-+|+||++++++|+.|. .+|++++||||+|.||......+.+.|... ..+.|.-| +.-.-+|+++
T Consensus 262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~--~q~~it~t---~~~~~~~~~~ 336 (349)
T PRK14079 262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASL--PQAIVAGT---EAPPGAALTL 336 (349)
T ss_pred HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcC--CcEEEEcC---CCCCCCceEE
Confidence 467999999999999998 899999999999999999999898887553 23444433 3456789999
Q ss_pred EEeCCeEEEe
Q psy5743 611 VLDKGKIVEI 620 (644)
Q Consensus 611 vl~~G~ive~ 620 (644)
.+++|++...
T Consensus 337 ~~~~~~~~~~ 346 (349)
T PRK14079 337 RIEAGVFTPE 346 (349)
T ss_pred EEeccEecCC
Confidence 9999988643
No 436
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.29 E-value=5.4e-12 Score=124.77 Aligned_cols=48 Identities=21% Similarity=0.261 Sum_probs=43.5
Q ss_pred CccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhc-cCCCCCcEEEEC
Q psy5743 415 AVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLR-LYDPQNGKILID 462 (644)
Q Consensus 415 ~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g-~~~p~~G~I~id 462 (644)
+++.+|+++++++|++++|+||+|+||||+++.+.+ .+.++.|.....
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a 66 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPA 66 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEc
Confidence 578999999999999999999999999999999999 778888886544
No 437
>PRK11098 microcin B17 transporter; Reviewed
Probab=99.28 E-value=6.9e-08 Score=102.90 Aligned_cols=275 Identities=13% Similarity=0.031 Sum_probs=169.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcC---CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q psy5743 91 SSITMAVPFALGKVIDVIYTS---DKKEMKEKMTSLSLLLMLVFVVGACCNFGRVYLMNVSAQSITKKLRERLFGSIISQ 167 (644)
Q Consensus 91 ~~~~~~~p~~~~~~id~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~ 167 (644)
.-+.+......+.+.|.+... .+......+......++.+.++......+..|+..+.. .++|+.+-++.++.
T Consensus 105 v~l~V~~n~w~~~FydaLq~al~~~~~~d~~~F~~~l~~f~~i~~~~v~l~v~~~~~~~~l~----irWR~wLT~~yl~~ 180 (409)
T PRK11098 105 VQVSVAVNAWYAPFYDLIQTALSSPGKVTIGQFYSEVGVFLGIALIAVVISVLNNFFVSHYV----FRWRTAMNEYYMAH 180 (409)
T ss_pred HHhhhhhhhhhHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 334445555566777766541 10000122333333344444444455555566555444 45555555554441
Q ss_pred ChhhhhccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHH
Q psy5743 168 ETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSK-------------LALISLIIVPPV 234 (644)
Q Consensus 168 ~~~~~~~~~~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~-------------l~li~l~~~~l~ 234 (644)
|...++...-=+|++.|++...+........++.++++.+..+.+++.+|.. +..++++...+-
T Consensus 181 ---Wl~~r~ienPDQRIqEDi~~F~~~tl~L~~~li~si~tLisF~~ILW~LS~~l~~~~i~G~ipg~Lv~~aiiyai~G 257 (409)
T PRK11098 181 ---WQKLRHIEGAAQRVQEDTMRFASTLENLGVSFINAIMTLIAFLPVLVTLSAHVPELPIVGHIPYGLVIAAIVWSLFG 257 (409)
T ss_pred ---HHhcCCCCCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCchHHHHHHHHHHHHH
Confidence 2222223346789999999988888788888888888888888888887865 334444444455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 235 AGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQE-KLEMSHFNAKMDDLFELAKKEALAKGVFFGFTGL 313 (644)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (644)
..+..+.++++.++..+.++..+.....+.-.=++.+ +.| ....++|.+..+++.+...+..+.. .....
T Consensus 258 T~it~~vG~~L~~Lnf~qqr~EAdFR~~LVrvrenaE-----~~E~~~L~~~F~~V~~N~~rl~~~~~~l~----~f~~~ 328 (409)
T PRK11098 258 TGLLAVVGIKLPGLEFKNQRVEAAYRKELVYGEDDAD-----RATPPTVRELFSNVRKNYFRLYFHYMYFN----IARIL 328 (409)
T ss_pred HHHHHHHcccchhhHHHHHHHHHHHHHHHhHhhhhhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH
Confidence 5566778999999888888888877664433222222 112 2233444444444444433332222 22222
Q ss_pred HHHHHHHHHHHHHHHHHHcCCcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy5743 314 SGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMERE 381 (644)
Q Consensus 314 ~~~~~~~~vl~~g~~~v~~g~~t~g~l~a~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~Rl~~~l~~~ 381 (644)
...+..+.-..+.+-....|++|.|.+......++++...++.+.+.+.++.+-....+|+.++.+.-
T Consensus 329 y~~~~~i~P~iv~aP~y~aG~ItlG~l~Q~~~AF~~V~~als~~v~sy~~lael~A~~~RL~~F~~~l 396 (409)
T PRK11098 329 YLQVDNVFGLFLLFPSIVAGTITLGLMTQITNVFGQVRGSFQYLINSWTTIVELLSIYKRLRSFEAAL 396 (409)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22223333334456777899999999999999999999999999999999999999999999987643
No 438
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.25 E-value=8.8e-11 Score=117.33 Aligned_cols=157 Identities=13% Similarity=0.212 Sum_probs=91.8
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHH-HHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTL-AMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTL-l~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
+.+++++..+++ .+++|+.+.|+|++||||||| .+.+.++.++....+++..
T Consensus 8 ~~~~~ld~~l~g------------gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~--------------- 60 (230)
T PRK08533 8 LSRDELHKRLGG------------GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVST--------------- 60 (230)
T ss_pred EEEeeeehhhCC------------CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeC---------------
Confidence 556666665543 278999999999999999999 6999998875444444432
Q ss_pred EEEecCCCCCcccHHHHH-hcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHc
Q psy5743 479 GSVSQEPTLFSGTIYENI-LYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALI 557 (644)
Q Consensus 479 ~~V~Q~~~Lf~gTIreNI-~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll 557 (644)
+.. ...+.++. .+|- +.++. ... +...++ .+ ...+|+++.++-.++|.+-
T Consensus 61 -----e~~--~~~~~~~~~~~g~------~~~~~---~~~-~~l~~~---------~~---~~~~~~~~~~~~~l~~il~ 111 (230)
T PRK08533 61 -----QLT--TTEFIKQMMSLGY------DINKK---LIS-GKLLYI---------PV---YPLLSGNSEKRKFLKKLMN 111 (230)
T ss_pred -----CCC--HHHHHHHHHHhCC------chHHH---hhc-CcEEEE---------Ee---cccccChHHHHHHHHHHHH
Confidence 110 01112221 1221 11110 000 000000 01 0236777766666666554
Q ss_pred c----CCCEEEeecccCCC----CHHHHHHHHHHHHHHcC-CceEEEEccCchHHh---------hcCEEEEEe
Q psy5743 558 K----KSKILLLDEATSAL----DAENEYLVQSAIEKLIE-GKTVLTIAHRLSTIR---------KSNQICVLD 613 (644)
Q Consensus 558 ~----~p~IliLDEaTSaL----D~~~e~~i~~~l~~~~~-~~TvI~IaHrl~~i~---------~aD~Iivl~ 613 (644)
. +|+++++||||+.+ |+...+.+.+.++.+.+ ++|+ ++||+..... -||-|+.|+
T Consensus 112 ~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g~tv-i~t~~~~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 112 TRRFYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSLNKVI-ILTANPKELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred HHHhcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhCCCEE-EEEecccccccccceeEEEeeeEEEEEE
Confidence 3 69999999999999 66666778887776644 5555 5566654322 247777776
No 439
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.23 E-value=6.4e-11 Score=126.13 Aligned_cols=63 Identities=32% Similarity=0.450 Sum_probs=57.1
Q ss_pred CCCChhHHHHHHHHHHHcc---------CCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh
Q psy5743 540 IMLSGGQKQRIAIARALIK---------KSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIR 604 (644)
Q Consensus 540 ~~LSGGQkQRiaLARAll~---------~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~ 604 (644)
..+|.||+++++||.++.. +||||+||||+|.||+.....+.+.|.+. +.++++.||+++.+.
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~--~~qv~it~~~~~~~~ 345 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL--GVQVFVTAISLDHLK 345 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc--CCEEEEEecChhhcc
Confidence 4689999999999999998 99999999999999999999999998764 679999999987654
No 440
>PRK12369 putative transporter; Reviewed
Probab=99.22 E-value=2.5e-07 Score=96.70 Aligned_cols=282 Identities=12% Similarity=0.040 Sum_probs=170.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 86 LLLVSSSITMAVPFALGKVIDVIYTSD---KKEMKEKMTSLSLLLMLVFVVGACCNFGRVYLMNVSAQSITKKLRERLFG 162 (644)
Q Consensus 86 ~~~~~~~~~~~~p~~~~~~id~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~ 162 (644)
+.+....+.+......+.+.|.+.... ++.....+......+..+.++..+......|+..+.+.+....+.+.+.+
T Consensus 25 l~l~~v~~~v~~n~w~~~fy~aL~~~~~~~~~~~~~~f~~~l~~f~~~~~~~v~~~v~~~~~~~~l~i~WR~wLT~~~l~ 104 (326)
T PRK12369 25 SLWYQVSLNVAINEWYGDFYDLLQKAKIEPNNHTAGDFWASILSFLAIAMPYVLIATVVDYFASHYAFRWREAMTFSYLK 104 (326)
T ss_pred HHHHHHHHhhhhhHHhHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555566666677778765421 00001223333334444444555556666666655554444444444444
Q ss_pred HHHcCChhhhhccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHH
Q psy5743 163 SIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKL------------ALISLII 230 (644)
Q Consensus 163 ~ll~~~~~~~~~~~~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l------------~li~l~~ 230 (644)
+-+... ...-.-=+|++.|++...+........++.++++++..+.+++.+|..+ .+++++.
T Consensus 105 ~wl~~~------~~iDNPDQRI~EDi~~f~~~tl~l~~~~i~s~~~l~sF~~iLW~lS~~l~~~~~g~ipg~lv~~aiiy 178 (326)
T PRK12369 105 FWRNKR------DNIEGSSQRIQEDTYRFAKIMESLGLSFLRAIMTLIAFIPILWGLSDGVSLPFLKDIPGSLVWIALLI 178 (326)
T ss_pred HHhcCC------CCCCCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceeeecCCCcchHHHHHHHH
Confidence 444321 1112223899999999888888888888888888888888888877433 3333444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 231 VPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAKGVFFGF 310 (644)
Q Consensus 231 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (644)
..+...+..+++|++.+...+.++..+.....+.-.=++-+. +.-.+...++|.+..++..+...+..+......
T Consensus 179 ai~gt~it~~iGr~L~~ln~~qq~~EAdFR~~Lvrvre~ae~---~~E~~~l~~~f~~v~~n~~~~~~~~~~l~~~~~-- 253 (326)
T PRK12369 179 SLGGLVISWFVGIKLPGLEYNNQKVEAAFRKELVYAEDDKKN---YAKPETLIELFTGLRFNYFRLFLHYGYFNIWLI-- 253 (326)
T ss_pred HHHHHHHHHHHcCcCchhhHHHHHHHHHHHHHHHhhccchhh---hhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH--
Confidence 444556667788898888888888777776533221111111 211133344455554444444333333322222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy5743 311 TGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMER 380 (644)
Q Consensus 311 ~~~~~~~~~~~vl~~g~~~v~~g~~t~g~l~a~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~Rl~~~l~~ 380 (644)
....+..++-..+.+.....|.++.|.+......++++...+..+.+.+.++.+-....+|+.++.+.
T Consensus 254 --~y~~~~~i~p~li~aP~y~sg~i~lG~l~Q~~~AF~~v~~als~~v~~y~~la~~~A~~~RL~~f~~~ 321 (326)
T PRK12369 254 --SFSQMMVIVPYLIMAPGLFAGVITLGVLMQISNAFSQVRSSFSVFIRNWTTITELRSIYKRLKEFEKN 321 (326)
T ss_pred --HHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222233333345667789999999999999999999999999999999999999999999998754
No 441
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=99.22 E-value=1.8e-11 Score=127.89 Aligned_cols=143 Identities=20% Similarity=0.200 Sum_probs=100.9
Q ss_pred eeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCC
Q psy5743 421 LSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGV 500 (644)
Q Consensus 421 isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~ 500 (644)
+++.+++|+.++|+|++|||||||+++|+++++|..|.+.++ |..++.... ++.+.++.+..
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ie--d~~El~~~~-~~~~~l~~~~~--------------- 198 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIE--DTREIFLPH-PNYVHLFYSKG--------------- 198 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEc--CccccCCCC-CCEEEEEecCC---------------
Confidence 557788999999999999999999999999999999988875 333433321 22222221110
Q ss_pred CCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHH
Q psy5743 501 NDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLV 580 (644)
Q Consensus 501 ~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i 580 (644)
+.| +++-...=+++++|-.+|+++++|||.+ .+ .
T Consensus 199 ------------------------------------~~~---~~~~~~~~~l~~~Lr~~pd~ii~gE~r~---~e----~ 232 (308)
T TIGR02788 199 ------------------------------------GQG---LAKVTPKDLLQSCLRMRPDRIILGELRG---DE----A 232 (308)
T ss_pred ------------------------------------CCC---cCccCHHHHHHHHhcCCCCeEEEeccCC---HH----H
Confidence 000 1111122356677888999999999996 22 2
Q ss_pred HHHHHHHcCCc-eEEEEccCchHHhhcCEEEEEeCCeEEEecChhHHh
Q psy5743 581 QSAIEKLIEGK-TVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLI 627 (644)
Q Consensus 581 ~~~l~~~~~~~-TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eLl 627 (644)
.+.++....+. +++..+|..+.....||+..|..|++...|...+.+
T Consensus 233 ~~~l~a~~~g~~~~i~T~Ha~~~~~~~~Rl~~l~~~~~~~~g~~~~~~ 280 (308)
T TIGR02788 233 FDFIRAVNTGHPGSITTLHAGSPEEAFEQLALMVKSSQAGLGLDFAYI 280 (308)
T ss_pred HHHHHHHhcCCCeEEEEEeCCCHHHHHHHHHHHhhccccccCCCHHHH
Confidence 34444444454 569999999998889999999999999889887776
No 442
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.19 E-value=1.1e-10 Score=135.49 Aligned_cols=150 Identities=16% Similarity=0.209 Sum_probs=95.7
Q ss_pred ccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE-EEecCCCCCcccHHH
Q psy5743 416 VILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG-SVSQEPTLFSGTIYE 494 (644)
Q Consensus 416 ~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~-~V~Q~~~Lf~gTIre 494 (644)
.|-.|+++. +.+..+.|+||+++||||+++.+.... +-.++| +||-+.. ..-++.+
T Consensus 316 ~Vpndi~l~-~~~~~~iITGpN~gGKTt~lktigl~~---------------------~maq~G~~vpa~~~-~~i~~~~ 372 (782)
T PRK00409 316 VVPKDISLG-FDKTVLVITGPNTGGKTVTLKTLGLAA---------------------LMAKSGLPIPANEP-SEIPVFK 372 (782)
T ss_pred eECceeEEC-CCceEEEEECCCCCCcHHHHHHHHHHH---------------------HHHHhCCCcccCCC-ccccccc
Confidence 343444443 345679999999999999999985321 111333 3443310 0011222
Q ss_pred HHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCH
Q psy5743 495 NILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDA 574 (644)
Q Consensus 495 NI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~ 574 (644)
+|.. ..|.+-.+..+-+.+|+|++|+..|+|++ .+|+++|||||++++|+
T Consensus 373 ~i~~-----------------------------~ig~~~si~~~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp 422 (782)
T PRK00409 373 EIFA-----------------------------DIGDEQSIEQSLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDP 422 (782)
T ss_pred eEEE-----------------------------ecCCccchhhchhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCH
Confidence 2211 01233334455678999999999999999 89999999999999999
Q ss_pred HHHHHHHHH-HHHHc-CCceEEEEccCchHHhhcCEEEEEeCCeEE
Q psy5743 575 ENEYLVQSA-IEKLI-EGKTVLTIAHRLSTIRKSNQICVLDKGKIV 618 (644)
Q Consensus 575 ~~e~~i~~~-l~~~~-~~~TvI~IaHrl~~i~~aD~Iivl~~G~iv 618 (644)
.....+..+ +..+. .+.++|++||..+....+.....+.++.+.
T Consensus 423 ~eg~ala~aile~l~~~~~~vIitTH~~el~~~~~~~~~v~~~~~~ 468 (782)
T PRK00409 423 DEGAALAISILEYLRKRGAKIIATTHYKELKALMYNREGVENASVE 468 (782)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEECChHHHHHHHhcCCCeEEEEEE
Confidence 877666554 33332 478999999998887654333233345543
No 443
>PF06472 ABC_membrane_2: ABC transporter transmembrane region 2; InterPro: IPR010509 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This region covers the N terminus and first two membrane regions of a small family of ABC transporters. Mutations in this domain in P28288 from SWISSPROT are believed responsible for Zellweger Syndrome-2 []; mutations in P33897 from SWISSPROT are responsible for recessive X-linked adrenoleukodystrophy []. A Saccharomyces cerevisiae protein containing this domain is involved in the import of long-chain fatty acids [].; GO: 0006810 transport, 0016020 membrane
Probab=99.17 E-value=2.9e-07 Score=95.00 Aligned_cols=226 Identities=17% Similarity=0.148 Sum_probs=168.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 83 AVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVYLMNVSAQSITKKLRERLFG 162 (644)
Q Consensus 83 ~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~ 162 (644)
.+++.++.+.++.......+.+.+.+...+...+.. ..+.++++.+..+++.....|+....+.+....+...+.+
T Consensus 32 ll~l~l~~~~lsv~~~~~~g~~~~aL~~~d~~~f~~----~l~~~~~l~~~~~~l~~~~~yl~~~L~l~wR~~Lt~~~~~ 107 (281)
T PF06472_consen 32 LLLLLLARVYLSVRINFWNGDFYNALQQKDLQAFWR----LLLLFLLLAIASALLNSILKYLRQRLALRWREWLTRHLHD 107 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445556667777888888899887765443333 3334444555555666677777777777777777777777
Q ss_pred HHHcCChhhhhccC----hhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q psy5743 163 SIISQETAYFDKHK----TGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLAL-ISLIIVPPVAGL 237 (644)
Q Consensus 163 ~ll~~~~~~~~~~~----~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l-i~l~~~~l~~~~ 237 (644)
+.++-. .||.-.. .-..=+|++.|++.+-+.....+..++..++.++...+.++..++.++. ++++..++...+
T Consensus 108 ~yl~~~-~yY~l~~~~~~idNpDQRIteDi~~f~~~~~~l~~~~~~~~~~l~~f~~~L~~~~g~~~~~~~~~y~~~~t~~ 186 (281)
T PF06472_consen 108 RYLSNR-TYYRLNNLDGRIDNPDQRITEDIRKFTESSLSLFLGLLKPILDLISFSVILWSISGWLGPWAALIYAILGTLI 186 (281)
T ss_pred HHcCCc-hhHhhhccccccccHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 766655 5665322 3356789999999998888888888888888888888888888877777 555666667788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 238 AIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAKGVFFGFTGL 313 (644)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (644)
..++++++.+...+.++..+..........++.+.|-.++.|+.+.++..+..++..+...+....+.....+..+
T Consensus 187 ~~~ig~~l~~l~~~~q~~Ea~fR~~l~r~r~naE~IA~~~Ge~~E~~~l~~~f~~l~~~~~~~~~~~~~~~~~~~~ 262 (281)
T PF06472_consen 187 THWIGPPLGRLNAEQQRLEADFRYALVRLRENAESIAFYRGESRERRRLDRRFDALIDNWRRLIRRRLRLGFFTNF 262 (281)
T ss_pred HHHHhhhhHHHHHHHHHhhchHHHHHHHHHHhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999888777766666655555544443
No 444
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=99.15 E-value=2e-11 Score=130.22 Aligned_cols=66 Identities=20% Similarity=0.227 Sum_probs=56.5
Q ss_pred ccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCc-EEEECCccCCCCChHHHhcceEEEecC
Q psy5743 416 VILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNG-KILIDGVDIKELDPMYLRSQIGSVSQE 484 (644)
Q Consensus 416 ~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G-~I~idg~~i~~~~~~~lr~~i~~V~Q~ 484 (644)
.+|++||+++++||.++|+||||||||||++ .|+.+|++| +|.+||+++...+..+++.-= .|.|+
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~~~~~ai~~LR-~VFQ~ 86 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFSPNKNAMETLD-EIFDG 86 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCCCCHHHHHHHH-HHHHh
Confidence 5799999999999999999999999999999 788888888 799999999887765543321 77775
No 445
>KOG0063|consensus
Probab=99.15 E-value=5.9e-11 Score=122.39 Aligned_cols=171 Identities=25% Similarity=0.372 Sum_probs=114.3
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEE-----------CCccCCCCC----hHHHhc--ceEEEecCCCCC
Q psy5743 426 QSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILI-----------DGVDIKELD----PMYLRS--QIGSVSQEPTLF 488 (644)
Q Consensus 426 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i-----------dg~~i~~~~----~~~lr~--~i~~V~Q~~~Lf 488 (644)
.||+..++||.+|-||||-++.++|-.+|.-|.--- .|-.+..+- .+.++. ..-||-|=|..-
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr~~ 177 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPRAV 177 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCCCCCCCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHHHH
Confidence 479999999999999999999999999998775321 111111110 111111 112344445555
Q ss_pred cccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecc
Q psy5743 489 SGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEA 568 (644)
Q Consensus 489 ~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEa 568 (644)
.|++.+++.--.+ .+...+++...++... ++ ..-..||||+-||.+||-+..++++++++|||
T Consensus 178 k~~v~~~l~~~~~------r~~~~~~~~~~~L~~~-------~~----re~~~lsggelqrfaia~~~vq~advyMFDEp 240 (592)
T KOG0063|consen 178 KGTVGSLLDRKDE------RDNKEEVCDQLDLNNL-------LD----REVEQLSGGELQRFAIAMVCVQKADVYMFDEP 240 (592)
T ss_pred HHHHHHHHHHHhh------cccHHHHHHHHHHhhH-------HH----hhhhhcccchhhhhhhhhhhhhhcceeEecCC
Confidence 5666666643211 1122223333322211 22 22357999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhh-cCEEEEEe
Q psy5743 569 TSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIRK-SNQICVLD 613 (644)
Q Consensus 569 TSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~~-aD~Iivl~ 613 (644)
.|-||......--..|+.+. +++-+|+|-|+|+.+.- .|-|.++-
T Consensus 241 SsYLDVKQRLkaA~~IRsl~~p~~YiIVVEHDLsVLDylSDFiCcLY 287 (592)
T KOG0063|consen 241 SSYLDVKQRLKAAITIRSLINPDRYIIVVEHDLSVLDYLSDFICCLY 287 (592)
T ss_pred cccchHHHhhhHHHHHHHhhCCCCeEEEEEeechHHHhhhcceeEEe
Confidence 99999997776666777654 68999999999998853 67777764
No 446
>PRK01156 chromosome segregation protein; Provisional
Probab=99.14 E-value=1.1e-10 Score=139.65 Aligned_cols=76 Identities=25% Similarity=0.348 Sum_probs=67.2
Q ss_pred CCCCCChhHHHHHHH------HHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC---C-ceEEEEccCchHHhhcC
Q psy5743 538 RGIMLSGGQKQRIAI------ARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE---G-KTVLTIAHRLSTIRKSN 607 (644)
Q Consensus 538 ~G~~LSGGQkQRiaL------ARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~---~-~TvI~IaHrl~~i~~aD 607 (644)
....|||||+||++| ||+++.+|++++|||||++||+.+...+.+.+..... + .|+|+|||+...+..||
T Consensus 798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~~~~d 877 (895)
T PRK01156 798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELLSVAD 877 (895)
T ss_pred ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHHHhcC
Confidence 467899999999975 5999999999999999999999999998888865332 2 48999999999999999
Q ss_pred EEEEEe
Q psy5743 608 QICVLD 613 (644)
Q Consensus 608 ~Iivl~ 613 (644)
+|+.++
T Consensus 878 ~ii~~~ 883 (895)
T PRK01156 878 VAYEVK 883 (895)
T ss_pred eEEEEE
Confidence 999998
No 447
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=99.10 E-value=6.8e-10 Score=119.06 Aligned_cols=168 Identities=22% Similarity=0.214 Sum_probs=119.1
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
-++-++++-.|.. ...+++++ +++.+||+++|+|++|+|||||++.|+|..+|+.|.|.+.|..-
T Consensus 130 ~~~r~~i~~~l~T--GiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGerg------------ 194 (432)
T PRK06793 130 AFEREEITDVFET--GIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERG------------ 194 (432)
T ss_pred chheechhhccCC--CCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCCc------------
Confidence 3566677666653 34577874 99999999999999999999999999999999999887776332
Q ss_pred EEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHc-
Q psy5743 479 GSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALI- 557 (644)
Q Consensus 479 ~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll- 557 (644)
-+++|.+. +.+...++. .|.+=-.-.+-|.|+|+|.+.+.+..
T Consensus 195 -----------~ev~e~~~---------------~~l~~~gl~----------~tvvv~~tsd~s~~~r~ra~~~a~~iA 238 (432)
T PRK06793 195 -----------REVKDFIR---------------KELGEEGMR----------KSVVVVATSDESHLMQLRAAKLATSIA 238 (432)
T ss_pred -----------ccHHHHHH---------------HHhhhcccc----------eeEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 12333332 111111111 12222445678999999999999887
Q ss_pred ------cCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhhcCEEEEEeCCeEEEecC
Q psy5743 558 ------KKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGS 622 (644)
Q Consensus 558 ------~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt 622 (644)
.++-++++||+|...|+. +.|-..+.+.. .+.|..+-+|-.+.+.+|-+ .++|.|...++
T Consensus 239 Eyfr~~G~~VLlilDslTr~a~A~--reisl~~~e~p~~G~~~~~~s~l~~L~ERag~---~~~GSiT~~~t 305 (432)
T PRK06793 239 EYFRDQGNNVLLMMDSVTRFADAR--RSVDIAVKELPIGGKTLLMESYMKKLLERSGK---TQKGSITGIYT 305 (432)
T ss_pred HHHHHcCCcEEEEecchHHHHHHH--HHHHHHhcCCCCCCeeeeeeccchhHHHHhcc---CCCcceEEEEE
Confidence 678899999999999997 44554555543 46788888886566666665 37888875544
No 448
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=99.09 E-value=9.2e-10 Score=129.10 Aligned_cols=67 Identities=19% Similarity=0.199 Sum_probs=58.2
Q ss_pred HccCCCEEEeecccCCC-CHHHHHHHHHHHHHHc-CCceEEEEccCchHH----------hhcCEEEEEeCCeEEEecC
Q psy5743 556 LIKKSKILLLDEATSAL-DAENEYLVQSAIEKLI-EGKTVLTIAHRLSTI----------RKSNQICVLDKGKIVEIGS 622 (644)
Q Consensus 556 ll~~p~IliLDEaTSaL-D~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i----------~~aD~Iivl~~G~ive~Gt 622 (644)
+..+|+++++|||+++| |+...+.+.+.+++.. .+.++|++||+++.+ ..||++++|.+|++.+.|+
T Consensus 649 l~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~ 727 (818)
T PRK13830 649 LTGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREPGT 727 (818)
T ss_pred cCCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccccch
Confidence 35799999999999999 6888899999988764 478999999999987 4799999999999877664
No 449
>PF13748 ABC_membrane_3: ABC transporter transmembrane region
Probab=99.08 E-value=5e-07 Score=87.78 Aligned_cols=175 Identities=15% Similarity=0.194 Sum_probs=130.0
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 71 TLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVYLMNVSAQ 150 (644)
Q Consensus 71 ~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (644)
...+.+++++.....+.+..+++.++.|++.++.||.+..++. ... ..++++.++..+....|+..-.+.-.
T Consensus 3 ~I~r~~~~kl~~T~~Lv~aEn~l~l~yPl~~G~AIn~ll~g~~----~~~----~~~~~~~l~~~~igaaRR~~DTRvf~ 74 (237)
T PF13748_consen 3 AIARRHRKKLALTFLLVLAENVLLLLYPLFIGFAINALLNGDV----WQA----LMYAALVLLMWAIGAARRIYDTRVFS 74 (237)
T ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccH----HHH----HHHHHHHHHHHHHhhhhHHHhhHHHH
Confidence 3457899999999999999999999999999999999987642 122 22233333333445555555555555
Q ss_pred HHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 151 SITKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLALISLII 230 (644)
Q Consensus 151 ~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li~l~~ 230 (644)
++..++-..++.+-- -++.+++.+..|++ =..++.+|+-..++.++.+++.+++..++++.++.++++..++.
T Consensus 75 rIy~~la~~vi~~qr------~~~~~~S~i~ARv~-lsRE~VdFfE~~lP~lits~vsivga~vmLl~~e~~~g~~~l~~ 147 (237)
T PF13748_consen 75 RIYAELAVPVILSQR------QQGLSVSTIAARVA-LSREFVDFFEQHLPTLITSVVSIVGAAVMLLVFEFWLGLACLLI 147 (237)
T ss_pred HHHHHHhHHHHHHHH------HhCCChhHHHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555444422 25678889999996 45778899999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 231 VPPVAGLAIVYGKFVRKITRNVQDKLANAV 260 (644)
Q Consensus 231 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (644)
+.+...+...|.++..+...+..+..++..
T Consensus 148 l~~~~~i~~~f~~~~~~L~~~LNnrlE~eV 177 (237)
T PF13748_consen 148 LALFLLILPRFARRNYRLYRRLNNRLEKEV 177 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHc
Confidence 888888888888777777666665554443
No 450
>PRK03918 chromosome segregation protein; Provisional
Probab=99.08 E-value=2.3e-10 Score=136.99 Aligned_cols=75 Identities=24% Similarity=0.367 Sum_probs=67.2
Q ss_pred CCCChhHHH------HHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC-CceEEEEccCchHHhhcCEEEEE
Q psy5743 540 IMLSGGQKQ------RIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE-GKTVLTIAHRLSTIRKSNQICVL 612 (644)
Q Consensus 540 ~~LSGGQkQ------RiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~-~~TvI~IaHrl~~i~~aD~Iivl 612 (644)
..|||||+| |+||||++..+|+++||||||++||+.+...+.+.|..+.. +.|+|+|||+.+....||+|++|
T Consensus 787 ~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~~~~~~d~~~~l 866 (880)
T PRK03918 787 TFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEELKDAADYVIRV 866 (880)
T ss_pred hhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHhCCeEEEE
Confidence 579999999 56667789999999999999999999999999999987643 57999999999999999999999
Q ss_pred eC
Q psy5743 613 DK 614 (644)
Q Consensus 613 ~~ 614 (644)
+.
T Consensus 867 ~~ 868 (880)
T PRK03918 867 SL 868 (880)
T ss_pred Ee
Confidence 83
No 451
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.08 E-value=8e-10 Score=106.83 Aligned_cols=85 Identities=15% Similarity=0.080 Sum_probs=62.2
Q ss_pred CccccccCCCCCCChhHHH-----HHHHHHH-HccCCCEEEeecccCCCC---HHHHHHHHHHHHHHc-CCceEEEEccC
Q psy5743 530 GFDTIVGERGIMLSGGQKQ-----RIAIARA-LIKKSKILLLDEATSALD---AENEYLVQSAIEKLI-EGKTVLTIAHR 599 (644)
Q Consensus 530 Gl~T~ige~G~~LSGGQkQ-----RiaLARA-ll~~p~IliLDEaTSaLD---~~~e~~i~~~l~~~~-~~~TvI~IaHr 599 (644)
|....+......+|+||+| +..+.++ .-.+|+++++||||+.+| ......+.+.+..+. .+.|+|+++|.
T Consensus 60 g~l~~~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~ 139 (187)
T cd01124 60 GLLAIVDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQ 139 (187)
T ss_pred CCeEEEecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEecc
Confidence 4444455566788999999 3444444 456899999999999999 666666666665543 37899999998
Q ss_pred chH----------HhhcCEEEEEeC
Q psy5743 600 LST----------IRKSNQICVLDK 614 (644)
Q Consensus 600 l~~----------i~~aD~Iivl~~ 614 (644)
... -..||.|+.|+.
T Consensus 140 ~~~~~~~~~~~~~~~~aD~ii~l~~ 164 (187)
T cd01124 140 SGLEGTGFGGGDVEYLVDGVIRLRL 164 (187)
T ss_pred ccCCCcccCcCceeEeeeEEEEEEE
Confidence 764 355899999973
No 452
>PRK00300 gmk guanylate kinase; Provisional
Probab=99.05 E-value=3.2e-10 Score=111.51 Aligned_cols=78 Identities=29% Similarity=0.431 Sum_probs=65.8
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhccCC------------CCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHH
Q psy5743 426 QSGSMTSVIGSSGSGKSTLAMLLLRLYD------------PQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIY 493 (644)
Q Consensus 426 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~------------p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIr 493 (644)
++|+.++|+||||||||||+++|++.++ |..|+ ++|.|+..++.+++++. +.|+.+++.+|+.
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge--~~g~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 77 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGE--VDGVDYFFVSKEEFEEM---IENGEFLEWAEVF 77 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCC--cCCCeeEEcCHHHHHHH---HHcCCcEEEEEEC
Confidence 5899999999999999999999999986 88899 69999999999998885 4688899999999
Q ss_pred HHHhcCCCCCCCCCHHHHHHHH
Q psy5743 494 ENILYGVNDSSSVTKSDIIHAA 515 (644)
Q Consensus 494 eNI~~g~~~~~~~~~~~i~~a~ 515 (644)
+|. +|. ..+.+.+++
T Consensus 78 ~~~-y~~------~~~~i~~~l 92 (205)
T PRK00300 78 GNY-YGT------PRSPVEEAL 92 (205)
T ss_pred Ccc-ccC------cHHHHHHHH
Confidence 984 663 355555444
No 453
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=99.04 E-value=4.7e-10 Score=109.60 Aligned_cols=119 Identities=23% Similarity=0.261 Sum_probs=79.2
Q ss_pred EEEEECCCCCcHHHHHHHHhccCCCC-CcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCH
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLYDPQ-NGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTK 508 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~~p~-~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~ 508 (644)
.+.|+||+||||||+++.|++.+++. .|.|..-+.++... ... ...++.|
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~-~~~---~~~~i~q------------------------- 53 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFV-HES---KRSLINQ------------------------- 53 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCcccc-ccC---ccceeee-------------------------
Confidence 68999999999999999999999754 56776655443211 000 0111111
Q ss_pred HHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc
Q psy5743 509 SDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI 588 (644)
Q Consensus 509 ~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~ 588 (644)
..+|.+...++. ++++|+..+|+++++||+. |.++-..+.+ ...
T Consensus 54 ------------------------~~vg~~~~~~~~------~i~~aLr~~pd~ii~gEir---d~e~~~~~l~---~a~ 97 (198)
T cd01131 54 ------------------------REVGLDTLSFEN------ALKAALRQDPDVILVGEMR---DLETIRLALT---AAE 97 (198)
T ss_pred ------------------------cccCCCccCHHH------HHHHHhcCCcCEEEEcCCC---CHHHHHHHHH---HHH
Confidence 112222222221 4889999999999999996 6655443333 334
Q ss_pred CCceEEEEccCchHHhhcCEEEEEe
Q psy5743 589 EGKTVLTIAHRLSTIRKSNQICVLD 613 (644)
Q Consensus 589 ~~~TvI~IaHrl~~i~~aD~Iivl~ 613 (644)
.+++++.++|..+.....||++.|-
T Consensus 98 ~G~~v~~t~Ha~~~~~~~~Rl~~l~ 122 (198)
T cd01131 98 TGHLVMSTLHTNSAAKTIDRIIDVF 122 (198)
T ss_pred cCCEEEEEecCCcHHHHHhHHHhhc
Confidence 5899999999999888888887763
No 454
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.04 E-value=3e-10 Score=140.22 Aligned_cols=76 Identities=24% Similarity=0.358 Sum_probs=69.4
Q ss_pred CCCCCChhHHHHHHHHHHH----ccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEe
Q psy5743 538 RGIMLSGGQKQRIAIARAL----IKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLD 613 (644)
Q Consensus 538 ~G~~LSGGQkQRiaLARAl----l~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~ 613 (644)
....||||||||++|||++ +++|+++||||||++||+.+...+.+.|.++.++.++|+|||+++.+..||+++.+.
T Consensus 1086 ~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~~~~~i~~sh~~~~~~~~d~~~~~~ 1165 (1179)
T TIGR02168 1086 NLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSKNTQFIVITHNKGTMEVADQLYGVT 1165 (1179)
T ss_pred cccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhccCCEEEEEEcChhHHHHhhhHeeee
Confidence 4468999999999999998 578899999999999999999999999988877889999999999999999997653
No 455
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.01 E-value=7.8e-10 Score=133.84 Aligned_cols=77 Identities=22% Similarity=0.234 Sum_probs=69.0
Q ss_pred CCCCChhHHHHHHHHHHHcc----------CCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHH-hhc
Q psy5743 539 GIMLSGGQKQRIAIARALIK----------KSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTI-RKS 606 (644)
Q Consensus 539 G~~LSGGQkQRiaLARAll~----------~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i-~~a 606 (644)
-.+||||+++|++||+||.. +|++|||||||++||+++...+.+.|.++. .++||++|||.++.. ..+
T Consensus 948 ~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~~~~~~~ 1027 (1042)
T TIGR00618 948 SATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPEFRERIP 1027 (1042)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHhhC
Confidence 36899999999999999985 799999999999999999999999998864 478999999999987 558
Q ss_pred CEEEEEeCC
Q psy5743 607 NQICVLDKG 615 (644)
Q Consensus 607 D~Iivl~~G 615 (644)
|+|.|++.|
T Consensus 1028 ~~i~v~~~~ 1036 (1042)
T TIGR00618 1028 HRILVKKTN 1036 (1042)
T ss_pred CEEEEEECC
Confidence 999999764
No 456
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.99 E-value=1.9e-09 Score=101.18 Aligned_cols=129 Identities=20% Similarity=0.163 Sum_probs=78.2
Q ss_pred EEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHH
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKS 509 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~ 509 (644)
.++|.|++|+||||+++.+++...+..|.|.+-+.+...-+ ..++....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~---------------------~~~~~~~~---------- 49 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEE---------------------LTERLIGE---------- 49 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHH---------------------HHHHHhhh----------
Confidence 37899999999999999999999876666654442211100 11111000
Q ss_pred HHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHH----------HHH
Q psy5743 510 DIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAEN----------EYL 579 (644)
Q Consensus 510 ~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~----------e~~ 579 (644)
... ..+.+ ...+.......+.++.++++.+++...+|+++++||+++-+|... .+.
T Consensus 50 ---------~~~----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~ 115 (165)
T cd01120 50 ---------SLK----GALDN-LIIVFATADDPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEE 115 (165)
T ss_pred ---------hhc----ccccc-EEEEEcCCCCCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHH
Confidence 000 00111 112222223345566678899999999999999999996655433 344
Q ss_pred HHHHHHHHc-CCceEEEEccCchHH
Q psy5743 580 VQSAIEKLI-EGKTVLTIAHRLSTI 603 (644)
Q Consensus 580 i~~~l~~~~-~~~TvI~IaHrl~~i 603 (644)
+.+.+.... .+.|+|+++|.....
T Consensus 116 l~~l~~~~~~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 116 LRELLERARKGGVTVIFTLQVPSGD 140 (165)
T ss_pred HHHHHHHHhcCCceEEEEEecCCcc
Confidence 444433332 388999999988654
No 457
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.98 E-value=1.8e-09 Score=113.70 Aligned_cols=82 Identities=18% Similarity=0.289 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHhcCCCccCCCCCccCCCCCccEEEEEEEEEcCCCCCCcccc-----------ceeEEEeCCCEEEEEC
Q psy5743 367 GLGACHRLWEIMEREPLISTSGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILN-----------DLSLKIQSGSMTSVIG 435 (644)
Q Consensus 367 ~~~s~~Rl~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~-----------~isl~i~~G~~vaIvG 435 (644)
+..+.+|++++++.++.... . + ....+.++|+||+|.||+ ++++|+ |+++.|.+||+++|||
T Consensus 103 ~~~~~ER~~~Ll~v~~vn~~---~-~-e~~~~ri~Fe~LTf~YP~--er~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG 175 (415)
T TIGR00767 103 SPKEGERYFALLKVESVNGD---D-P-EKAKNRVLFENLTPLYPN--ERLRLETSTEDLSTRVLDLFAPIGKGQRGLIVA 175 (415)
T ss_pred ccccHhHHHHHhCCCccCCC---C-c-cccCCCeEEEEeeecCCC--ccceeecCccccceeeeeeEEEeCCCCEEEEEC
Confidence 34578999999987654211 1 1 223467999999999985 457897 9999999999999999
Q ss_pred CCCCcHHHHHHHHhccCCCC
Q psy5743 436 SSGSGKSTLAMLLLRLYDPQ 455 (644)
Q Consensus 436 ~SGsGKSTLl~lL~g~~~p~ 455 (644)
|+|||||||++.+.+.+...
T Consensus 176 ~~g~GKTtL~~~i~~~I~~n 195 (415)
T TIGR00767 176 PPKAGKTVLLQKIAQAITRN 195 (415)
T ss_pred CCCCChhHHHHHHHHhhccc
Confidence 99999999999999998653
No 458
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.97 E-value=2.2e-08 Score=90.81 Aligned_cols=117 Identities=38% Similarity=0.447 Sum_probs=84.6
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhccCCCCC-cEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCC
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRLYDPQN-GKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSS 505 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~-G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~ 505 (644)
+|..+.|+||+||||||+++.+++.+.... +-+.++...........
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------- 48 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQ-------------------------------- 48 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHH--------------------------------
Confidence 478899999999999999999999997765 55555552222111111
Q ss_pred CCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHH---
Q psy5743 506 VTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQS--- 582 (644)
Q Consensus 506 ~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~--- 582 (644)
.. .....+......+++.++..+++|-..+|+++++||+.+..+.........
T Consensus 49 -----~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~ 104 (148)
T smart00382 49 -----LL-------------------LIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEE 104 (148)
T ss_pred -----HH-------------------hhhhhccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhh
Confidence 00 333455566788999999999999999999999999999999887765543
Q ss_pred ----HHHHHcCCceEEEEccC
Q psy5743 583 ----AIEKLIEGKTVLTIAHR 599 (644)
Q Consensus 583 ----~l~~~~~~~TvI~IaHr 599 (644)
.......+..+|.++|.
T Consensus 105 ~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 105 LRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred hHHHHHHHhcCCCEEEEEeCC
Confidence 22233456777888873
No 459
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.97 E-value=4.2e-09 Score=103.93 Aligned_cols=139 Identities=19% Similarity=0.213 Sum_probs=82.8
Q ss_pred CCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCC-CcEEEECCccCCCCChHHHhcceEEEecCCCCCcc-c
Q psy5743 414 DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQ-NGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSG-T 491 (644)
Q Consensus 414 ~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~-~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~g-T 491 (644)
+.+|-+|++|++++|++++|+||+|+||||+++.+....-.. -|. .+.. + +..++++ +.+|.. .
T Consensus 16 ~~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~------~vpa----~-~~~i~~~---~~i~~~~~ 81 (218)
T cd03286 16 SSFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGM------DVPA----K-SMRLSLV---DRIFTRIG 81 (218)
T ss_pred CCeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcCC------ccCc----c-ccEeccc---cEEEEecC
Confidence 357889999999999999999999999999999887653110 010 0000 0 0011111 112211 1
Q ss_pred HHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCC
Q psy5743 492 IYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSA 571 (644)
Q Consensus 492 IreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSa 571 (644)
-.||+..+.. .+. .+-+|++-.=....+|++++||||.++
T Consensus 82 ~~d~~~~~~S---------------------------------------tF~-~e~~~~~~il~~~~~~sLvLlDE~~~G 121 (218)
T cd03286 82 ARDDIMKGES---------------------------------------TFM-VELSETANILRHATPDSLVILDELGRG 121 (218)
T ss_pred cccccccCcc---------------------------------------hHH-HHHHHHHHHHHhCCCCeEEEEecccCC
Confidence 2222222211 000 122333211111257899999999999
Q ss_pred CCHHHHHHHHHH-HHHHcC--CceEEEEccCchHHhhc
Q psy5743 572 LDAENEYLVQSA-IEKLIE--GKTVLTIAHRLSTIRKS 606 (644)
Q Consensus 572 LD~~~e~~i~~~-l~~~~~--~~TvI~IaHrl~~i~~a 606 (644)
.|+.....+..+ ++.+.+ +.++|++||..+.....
T Consensus 122 t~~~dg~~la~ail~~L~~~~~~~~i~~TH~~el~~~~ 159 (218)
T cd03286 122 TSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYHSLCDEF 159 (218)
T ss_pred CCchHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHHh
Confidence 999876666666 444443 78999999999887654
No 460
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.96 E-value=1.2e-09 Score=134.90 Aligned_cols=85 Identities=21% Similarity=0.254 Sum_probs=74.0
Q ss_pred CccccccCCC------CCCChhHHHHHHHHHHHc----cCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccC
Q psy5743 530 GFDTIVGERG------IMLSGGQKQRIAIARALI----KKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHR 599 (644)
Q Consensus 530 Gl~T~ige~G------~~LSGGQkQRiaLARAll----~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHr 599 (644)
|++..|...| ..||||||++++||+++. ++||++|||||+++||+.+...+.+.|.++.++.++|+|||+
T Consensus 1057 ~~~~~~~~~~~~~~~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~~~~~i~~t~~ 1136 (1164)
T TIGR02169 1057 GLELSAKPKGKPVQRLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAGEAQFIVVSLR 1136 (1164)
T ss_pred CeEEEEEcCCCCCCcchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcCCCeEEEEECc
Confidence 5555554333 479999999999999996 588999999999999999999999999988777899999999
Q ss_pred chHHhhcCEEEEEeC
Q psy5743 600 LSTIRKSNQICVLDK 614 (644)
Q Consensus 600 l~~i~~aD~Iivl~~ 614 (644)
..++..||+++.+..
T Consensus 1137 ~~~~~~~d~~~~~~~ 1151 (1164)
T TIGR02169 1137 SPMIEYADRAIGVTM 1151 (1164)
T ss_pred HHHHHhcceeEeEEE
Confidence 999999999987753
No 461
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.85 E-value=5e-09 Score=105.72 Aligned_cols=64 Identities=22% Similarity=0.323 Sum_probs=53.3
Q ss_pred CCCChhHHHHHHHHHHHccCC---CEEEeecccCCCCHHHHHHHHHHHHHHcC-CceEEEEccCchHH
Q psy5743 540 IMLSGGQKQRIAIARALIKKS---KILLLDEATSALDAENEYLVQSAIEKLIE-GKTVLTIAHRLSTI 603 (644)
Q Consensus 540 ~~LSGGQkQRiaLARAll~~p---~IliLDEaTSaLD~~~e~~i~~~l~~~~~-~~TvI~IaHrl~~i 603 (644)
..+|.|+||.+.|+-+++..+ .++++|||-++|++...+.+.+.|.+..+ +.-+|+.||.+..+
T Consensus 235 ~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~il 302 (303)
T PF13304_consen 235 SSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPFIL 302 (303)
T ss_dssp S---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GGG-
T ss_pred ccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccchhc
Confidence 356999999999999988766 99999999999999999999999988765 78999999998765
No 462
>PRK02224 chromosome segregation protein; Provisional
Probab=98.83 E-value=6.4e-09 Score=124.50 Aligned_cols=76 Identities=26% Similarity=0.415 Sum_probs=66.6
Q ss_pred CCCChhHHH------HHHHHHHHccC-----C-CEEEeecccCCCCHHHHHHHHHHHHHHcC-C-ceEEEEccCchHHhh
Q psy5743 540 IMLSGGQKQ------RIAIARALIKK-----S-KILLLDEATSALDAENEYLVQSAIEKLIE-G-KTVLTIAHRLSTIRK 605 (644)
Q Consensus 540 ~~LSGGQkQ------RiaLARAll~~-----p-~IliLDEaTSaLD~~~e~~i~~~l~~~~~-~-~TvI~IaHrl~~i~~ 605 (644)
..||||||| |+++||++..+ | +++||||||++||+.....+.+.|..+.. + .++|+|||+++.+..
T Consensus 780 ~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~~~~~ 859 (880)
T PRK02224 780 EQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDELVGA 859 (880)
T ss_pred hhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChHHHHh
Confidence 489999999 99999999864 2 67999999999999999999988877643 3 489999999999999
Q ss_pred cCEEEEEeCC
Q psy5743 606 SNQICVLDKG 615 (644)
Q Consensus 606 aD~Iivl~~G 615 (644)
||+++++...
T Consensus 860 ad~~~~~~~~ 869 (880)
T PRK02224 860 ADDLVRVEKD 869 (880)
T ss_pred cCeeEEeecC
Confidence 9999999743
No 463
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.82 E-value=6.7e-08 Score=97.10 Aligned_cols=150 Identities=18% Similarity=0.147 Sum_probs=88.3
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCC
Q psy5743 424 KIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDS 503 (644)
Q Consensus 424 ~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~ 503 (644)
-+|+|..+.|.|++|||||||...++-..-...+ .+.|+..+-.. ..+.+|.
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~-------------------~~~y~~~e~~~--~~~~~~~------- 72 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGK-------------------KVYVITTENTS--KSYLKQM------- 72 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCC-------------------EEEEEEcCCCH--HHHHHHH-------
Confidence 4899999999999999999999988532211222 44455543211 1222222
Q ss_pred CCCCHHHHHHHHHHHhhccchhhhhcCcccccc---CCCCCCChhHHHHHHHHHHHcc--CCCEEEeecccCCCC---HH
Q psy5743 504 SSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVG---ERGIMLSGGQKQRIAIARALIK--KSKILLLDEATSALD---AE 575 (644)
Q Consensus 504 ~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ig---e~G~~LSGGQkQRiaLARAll~--~p~IliLDEaTSaLD---~~ 575 (644)
+..+++ .......|+-..+. +.....|.++++.+..++..+. +|+++++||||+.+| .+
T Consensus 73 ------------~~~g~~-~~~~~~~g~l~i~~~~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~ 139 (234)
T PRK06067 73 ------------ESVKID-ISDFFLWGYLRIFPLNTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEED 139 (234)
T ss_pred ------------HHCCCC-hhHHHhCCCceEEeccccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHH
Confidence 222210 00000111111100 1223456789999999999997 899999999996544 33
Q ss_pred HHHHHHHHHHHH-cCCceEEEEccCchH--------HhhcCEEEEEeC
Q psy5743 576 NEYLVQSAIEKL-IEGKTVLTIAHRLST--------IRKSNQICVLDK 614 (644)
Q Consensus 576 ~e~~i~~~l~~~-~~~~TvI~IaHrl~~--------i~~aD~Iivl~~ 614 (644)
.-..+.+.+..+ ..+.|+++++|.... ..-+|-++.|+.
T Consensus 140 ~~~~~l~~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l~DgvI~L~~ 187 (234)
T PRK06067 140 DILNFLTEAKNLVDLGKTILITLHPYAFSEELLSRIRSICDVYLKLRA 187 (234)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEecCCcCCHHHHHHHHhheEEEEEEEe
Confidence 334444445442 247899999997653 234577777763
No 464
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.80 E-value=9.4e-09 Score=110.40 Aligned_cols=87 Identities=17% Similarity=0.248 Sum_probs=72.6
Q ss_pred CccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEEC---CccCCCCChHH
Q psy5743 397 KGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILID---GVDIKELDPMY 473 (644)
Q Consensus 397 ~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~id---g~~i~~~~~~~ 473 (644)
.+.++.++++..|.. ...+++.++ +|.+||+++|+|+||||||||++.|.|+.+|+.|.|.+. |.++.++..+.
T Consensus 137 p~~~~r~~v~~~l~T--Gi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~e~~~~~ 213 (450)
T PRK06002 137 PPAMTRARVETGLRT--GVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVREFLEDT 213 (450)
T ss_pred CCCeEeecceEEcCC--CcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHHHHhHHH
Confidence 346899999999974 356888886 999999999999999999999999999999999999885 67777665544
Q ss_pred H----hcceEEEecCCC
Q psy5743 474 L----RSQIGSVSQEPT 486 (644)
Q Consensus 474 l----r~~i~~V~Q~~~ 486 (644)
+ ++.|++|+|...
T Consensus 214 l~~~r~rtI~vV~qsd~ 230 (450)
T PRK06002 214 LADNLKKAVAVVATSDE 230 (450)
T ss_pred HHHhhCCeEEEEEcCCC
Confidence 3 357999999754
No 465
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=98.78 E-value=1.4e-08 Score=122.46 Aligned_cols=75 Identities=32% Similarity=0.337 Sum_probs=64.2
Q ss_pred CCCCChhHHHHHHHHHHHcc--------CCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhhc-CE
Q psy5743 539 GIMLSGGQKQRIAIARALIK--------KSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIRKS-NQ 608 (644)
Q Consensus 539 G~~LSGGQkQRiaLARAll~--------~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~~a-D~ 608 (644)
-..|||||+||++|||||.. +|++|||||||++||+.+-..+.+.|..+. .|+||++|||-....... .+
T Consensus 947 ~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~l~~~i~~q 1026 (1047)
T PRK10246 947 TRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKERIPVQ 1026 (1047)
T ss_pred cccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHHHHHhccce
Confidence 46899999999999999985 899999999999999999999999998874 579999999977766443 45
Q ss_pred EEEEe
Q psy5743 609 ICVLD 613 (644)
Q Consensus 609 Iivl~ 613 (644)
|.|-.
T Consensus 1027 i~V~k 1031 (1047)
T PRK10246 1027 IKVKK 1031 (1047)
T ss_pred EEEEE
Confidence 55544
No 466
>PF05992 SbmA_BacA: SbmA/BacA-like family; InterPro: IPR009248 The Rhizobium meliloti (Sinorhizobium meliloti) bacA gene encodes a function that is essential for bacterial differentiation into bacteroids within plant cells in the symbiosis between R. meliloti and alfalfa. An Escherichia coli homologue of BacA, SbmA, is implicated in the uptake of microcins and bleomycin. This family is likely to be a subfamily of the ABC transporter family.; GO: 0005215 transporter activity, 0006810 transport, 0009276 Gram-negative-bacterium-type cell wall, 0016021 integral to membrane
Probab=98.75 E-value=0.00015 Score=73.73 Aligned_cols=238 Identities=13% Similarity=0.043 Sum_probs=151.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy5743 127 LMLVFVVGACCNFGRVYLMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRST 206 (644)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~ 206 (644)
++.+.+...++..+..+....... ++|..+-+-.++. |-..++.-.--+|+..|+.+....+-.....++.++
T Consensus 62 f~~ia~~~v~~~v~~~ff~shyiF----rWR~Am~~yY~~~---W~~~r~IEGASQRIQEDtmrfa~i~E~Lgv~~i~si 134 (315)
T PF05992_consen 62 FLWIAMIYVVLAVLNSFFVSHYIF----RWRTAMNEYYMSH---WPKLRHIEGASQRIQEDTMRFAKIMEDLGVSFIRSI 134 (315)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhHHHHHH---HHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444455444434 5555554444332 333356666688999999998888877888888888
Q ss_pred HHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHH
Q psy5743 207 VMVSAGVSMMFIISSKLA-------------LISLIIVPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTV 273 (644)
Q Consensus 207 ~~~i~~~~~l~~~~~~l~-------------li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~I 273 (644)
.+.+..+-+++.+|..+. .++++...+-.++..+.+.++..+..+.++..+...+ |.+-|=..
T Consensus 135 mtliaFlPiL~~lS~~V~~lp~~g~i~~~Lv~~ai~~s~~gt~~l~~vGikLPgLe~~nQkvEAAyRK---eLV~gED~- 210 (315)
T PF05992_consen 135 MTLIAFLPILWELSSHVSELPFFGEIPHSLVWAAIIWSLFGTILLAFVGIKLPGLEFNNQKVEAAYRK---ELVYGEDD- 210 (315)
T ss_pred HHHHHHHHHHHHHhccCCcCcccCCCchHHHHHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHHH---HHHhcCcc-
Confidence 888877777776554332 2223333334455566677887777777777777666 33322222
Q ss_pred HHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHhHHHHHHHHHHHHHHH
Q psy5743 274 KSFSQEKLEMSHFNAKMDDLFELAKKEALAKGVFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGIS 353 (644)
Q Consensus 274 k~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~~t~g~l~a~~~~~~~~~~~ 353 (644)
.-....+...+.|.+...++++........+.......++. .+....+-+-.+..|.+|+|.+......++++..+
T Consensus 211 ~~ra~~~tl~eLF~~Vr~Ny~rly~hy~yfni~~~~y~q~~----~i~~~i~l~Psi~ag~iTLG~~~Qi~~aF~~V~~s 286 (315)
T PF05992_consen 211 ANRAQPPTLRELFSNVRRNYFRLYFHYMYFNIARISYLQFD----VIFPYIILIPSIVAGAITLGVLQQISNAFGQVRSS 286 (315)
T ss_pred cccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence 22233344455666666666666655555544443333322 22222333455678999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5743 354 IGGLSNFYSELNKGLGACHRLWEIME 379 (644)
Q Consensus 354 l~~l~~~~~~~~~~~~s~~Rl~~~l~ 379 (644)
++.+.+.+..+.+-....+|+.++-.
T Consensus 287 fq~lv~~W~tivEL~Si~kRL~~FE~ 312 (315)
T PF05992_consen 287 FQYLVNSWTTIVELRSIYKRLRAFEA 312 (315)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998743
No 467
>PRK01889 GTPase RsgA; Reviewed
Probab=98.70 E-value=1.4e-08 Score=107.97 Aligned_cols=135 Identities=20% Similarity=0.191 Sum_probs=91.9
Q ss_pred cccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHH
Q psy5743 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENI 496 (644)
Q Consensus 417 vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI 496 (644)
-++.+.-.+++|++++++|+||+|||||++.|+|...|..|+|.+++..-... ..++++.+++|++++|+.+-..|+
T Consensus 184 gl~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~t---t~~~~l~~l~~~~~l~DtpG~~~~ 260 (356)
T PRK01889 184 GLDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHT---TTHRELHPLPSGGLLIDTPGMREL 260 (356)
T ss_pred cHHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcch---hhhccEEEecCCCeecCCCchhhh
Confidence 35667777889999999999999999999999999999999999987554332 335689999999999998888888
Q ss_pred hcCCCCCC-CCCHHHHHHHHHHHhhccchhhhhcCcc--ccccCCCCCCChhHHHHHHHHHHHccC
Q psy5743 497 LYGVNDSS-SVTKSDIIHAAKEANAYGFVIDFKNGFD--TIVGERGIMLSGGQKQRIAIARALIKK 559 (644)
Q Consensus 497 ~~g~~~~~-~~~~~~i~~a~~~a~l~~~i~~lp~Gl~--T~ige~G~~LSGGQkQRiaLARAll~~ 559 (644)
.+.++... .....++.+.++.|..++-.-.-..|-. --+-+ .+|| ++|...-+.|+++
T Consensus 261 ~l~~~~~~l~~~f~~~~~~~~~c~f~~c~h~~E~~c~v~~a~~~--~~i~---~~r~~~Y~~l~~e 321 (356)
T PRK01889 261 QLWDAEDGVEETFSDIEELAAQCRFRDCAHEAEPGCAVQAAIEN--GELD---ERRLQSYRKLQRE 321 (356)
T ss_pred cccCchhhHHHhHHHHHHHHccCCCCCCCCCCCCCChHHHHHHc--CCCC---HHHHHHHHHHHHH
Confidence 88754200 0112345555555544332211111111 11111 3354 7888888888765
No 468
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.69 E-value=1.6e-07 Score=87.59 Aligned_cols=84 Identities=17% Similarity=0.278 Sum_probs=64.3
Q ss_pred CCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC-CceEEEEccCchHHhh-cCEEEEEeCCeEE
Q psy5743 541 MLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE-GKTVLTIAHRLSTIRK-SNQICVLDKGKIV 618 (644)
Q Consensus 541 ~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~-~~TvI~IaHrl~~i~~-aD~Iivl~~G~iv 618 (644)
..|-|+-=-=-+.|.+ .+..|+|||||-|+|-+..+-.+...|+++.+ +.-+|+.||.+=.+.. --.|+-++.+.+
T Consensus 129 ~~SHGEsf~~i~~~rf-~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiLlAiP~A~I~~~~~~g~- 206 (233)
T COG3910 129 HMSHGESFLAIFHNRF-NGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPILLAIPGAEIYEISESGI- 206 (233)
T ss_pred hhccchHHHHHHHHHh-ccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhheeCCCcEEEEEecCCc-
Confidence 3488886655556665 45689999999999999999999999988754 6789999999877644 357888888774
Q ss_pred EecChhHH
Q psy5743 619 EIGSYAHL 626 (644)
Q Consensus 619 e~Gt~~eL 626 (644)
+.-+|+|.
T Consensus 207 ~~~~fe~t 214 (233)
T COG3910 207 EERDFEET 214 (233)
T ss_pred cccchHHH
Confidence 44566654
No 469
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=98.66 E-value=4.2e-07 Score=107.33 Aligned_cols=54 Identities=26% Similarity=0.266 Sum_probs=47.6
Q ss_pred HHHHHccCCCEEEeecccCCC-CHHHHHHHHHHHHHHc-CCceEEEEccCchHHhh
Q psy5743 552 IARALIKKSKILLLDEATSAL-DAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIRK 605 (644)
Q Consensus 552 LARAll~~p~IliLDEaTSaL-D~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~~ 605 (644)
++|++..+|+++++|||++.| |+...+.+.+.++... .+.+++++||+++.+..
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d~~~ 735 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSDAAN 735 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh
Confidence 688999999999999999999 6888889988887764 47899999999998764
No 470
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.65 E-value=5e-08 Score=94.39 Aligned_cols=78 Identities=22% Similarity=0.228 Sum_probs=58.5
Q ss_pred cccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCC--C-cccHH
Q psy5743 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTL--F-SGTIY 493 (644)
Q Consensus 417 vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~L--f-~gTIr 493 (644)
..+=+.+.+++|+.++|+||+|||||||++.|+|+++|+.|.|.+.+.+--.+. .+..++++.|.+.. + .-|..
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 90 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLP---HPNWVRLVTRPGNVEGSGEVTMA 90 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCC---CCCEEEEEEecCCCCCCCccCHH
Confidence 455667789999999999999999999999999999999999999774433321 24557777665532 2 24666
Q ss_pred HHHh
Q psy5743 494 ENIL 497 (644)
Q Consensus 494 eNI~ 497 (644)
+++.
T Consensus 91 ~~l~ 94 (186)
T cd01130 91 DLLR 94 (186)
T ss_pred HHHH
Confidence 6654
No 471
>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.
Probab=98.61 E-value=3.1e-07 Score=96.97 Aligned_cols=172 Identities=24% Similarity=0.336 Sum_probs=116.7
Q ss_pred EEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHh-ccCCCCCcEEEECCccCCCCChHHHhcceEEEec
Q psy5743 405 IRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLL-RLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQ 483 (644)
Q Consensus 405 vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~-g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q 483 (644)
|+|.-|.. . .+.+ +-||+| .+.|||..=-|||||++.|. |-|+..-| || |..+-..+.
T Consensus 227 ve~~LP~~-g--~v~G--MGIp~G-vTlIvGGGyHGKSTLL~Ale~GVYnHipG----DG-----------RE~VVT~~~ 285 (448)
T PF09818_consen 227 VEIELPNG-G--TVTG--MGIPKG-VTLIVGGGYHGKSTLLEALERGVYNHIPG----DG-----------REFVVTDPD 285 (448)
T ss_pred EEEECCCC-C--EEEE--EeeCCc-EEEEECCCCccHHHHHHHHHhcccCCCCC----CC-----------ceEEEECCC
Confidence 66777642 1 2444 568899 99999999999999999885 67765444 44 112211111
Q ss_pred CCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEE
Q psy5743 484 EPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKIL 563 (644)
Q Consensus 484 ~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~Il 563 (644)
-..+- .+| - ...+.+.+..||.+||.|.||. --.=.+=||---|=-.|..||-..+++|
T Consensus 286 avkir-----------AED------G---R~V~~vDISpFI~~LP~g~dT~-~FsT~~ASGSTSqAAnI~EAlE~Ga~~L 344 (448)
T PF09818_consen 286 AVKIR-----------AED------G---RSVEGVDISPFINNLPGGKDTT-CFSTENASGSTSQAANIMEALEAGARLL 344 (448)
T ss_pred ceEEE-----------ecC------C---ceEeCccchHHHhhCCCCCCCC-cccccCCCchHHHHHHHHHHHHcCCCEE
Confidence 11100 011 1 1345677889999999999987 3333467999999999999999999999
Q ss_pred EeecccCCC-----CHHHHHHH----------HHHHHHHc--CCc-eEEEEccCchHHhhcCEEEEEeCCeEE
Q psy5743 564 LLDEATSAL-----DAENEYLV----------QSAIEKLI--EGK-TVLTIAHRLSTIRKSNQICVLDKGKIV 618 (644)
Q Consensus 564 iLDEaTSaL-----D~~~e~~i----------~~~l~~~~--~~~-TvI~IaHrl~~i~~aD~Iivl~~G~iv 618 (644)
++||=|||- |..-++.| .+.+++++ .+. |++++.---..+..||+|++|++=+..
T Consensus 345 LiDEDtsATNfmiRD~rMq~Lv~k~kEPITPfidrvr~l~~~~GvStIlV~Ggsgdy~~vAD~Vi~Md~Y~~~ 417 (448)
T PF09818_consen 345 LIDEDTSATNFMIRDERMQALVSKEKEPITPFIDRVRSLYEKLGVSTILVVGGSGDYFDVADRVIMMDEYRPK 417 (448)
T ss_pred EEcCcccchheeehhHHHHHhhccCCCCcchHHHHHHHHHHHcCceEEEEeccchhhHhhCCEEEEecCccch
Confidence 999999996 55555555 22333332 244 555555555678999999999986643
No 472
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.60 E-value=1.2e-07 Score=95.54 Aligned_cols=45 Identities=20% Similarity=0.348 Sum_probs=35.7
Q ss_pred HHccCCCEEEeecccCC------CCHHHHHHHHHHHHHHcC--CceEEEEccCc
Q psy5743 555 ALIKKSKILLLDEATSA------LDAENEYLVQSAIEKLIE--GKTVLTIAHRL 600 (644)
Q Consensus 555 All~~p~IliLDEaTSa------LD~~~e~~i~~~l~~~~~--~~TvI~IaHrl 600 (644)
+..++|+++|+| |+++ .|+..-..+.+.|.++.+ +.|+|+++|..
T Consensus 107 ~~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~ 159 (239)
T cd01125 107 LLIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVR 159 (239)
T ss_pred HHhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccC
Confidence 345799999999 7654 688877788888877643 78999999976
No 473
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.59 E-value=1.3e-07 Score=100.35 Aligned_cols=123 Identities=23% Similarity=0.258 Sum_probs=81.0
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhccCCC-CCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCC
Q psy5743 425 IQSGSMTSVIGSSGSGKSTLAMLLLRLYDP-QNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDS 503 (644)
Q Consensus 425 i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p-~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~ 503 (644)
.+++..+.|+||+||||||+++.+++.+++ .+|.|..-+.++.-.. ......+
T Consensus 119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~----~~~~~~i---------------------- 172 (343)
T TIGR01420 119 ERPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVH----RNKRSLI---------------------- 172 (343)
T ss_pred hhcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhc----cCccceE----------------------
Confidence 467999999999999999999999998764 4677765443221100 0000000
Q ss_pred CCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHH
Q psy5743 504 SSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSA 583 (644)
Q Consensus 504 ~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~ 583 (644)
.+..+|..+.. --=++++||-.+||++++||++ |.++.....++
T Consensus 173 ---------------------------~q~evg~~~~~------~~~~l~~~lr~~pd~i~vgEir---d~~~~~~~l~a 216 (343)
T TIGR01420 173 ---------------------------NQREVGLDTLS------FANALRAALREDPDVILIGEMR---DLETVELALTA 216 (343)
T ss_pred ---------------------------EccccCCCCcC------HHHHHHHhhccCCCEEEEeCCC---CHHHHHHHHHH
Confidence 01122222111 1235788999999999999997 88877654443
Q ss_pred HHHHcCCceEEEEccCchHHhhcCEEEEE
Q psy5743 584 IEKLIEGKTVLTIAHRLSTIRKSNQICVL 612 (644)
Q Consensus 584 l~~~~~~~TvI~IaHrl~~i~~aD~Iivl 612 (644)
...|.+++...|..+.....||++-|
T Consensus 217 ---a~tGh~v~~T~Ha~~~~~~~~Rl~~~ 242 (343)
T TIGR01420 217 ---AETGHLVFGTLHTNSAAQTIERIIDV 242 (343)
T ss_pred ---HHcCCcEEEEEcCCCHHHHHHHHHHh
Confidence 34589999999998877766666543
No 474
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.59 E-value=4.8e-08 Score=105.01 Aligned_cols=82 Identities=24% Similarity=0.269 Sum_probs=65.7
Q ss_pred CccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCC---cEEEECCccCCCCChHHH------hcceEEEecCC
Q psy5743 415 AVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQN---GKILIDGVDIKELDPMYL------RSQIGSVSQEP 485 (644)
Q Consensus 415 ~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~---G~I~idg~~i~~~~~~~l------r~~i~~V~Q~~ 485 (644)
..+++++ +++.+||+++|+|+||+|||||+++|+|+++|+. |.|-.+|.++.++..+.+ |+.+++++||.
T Consensus 143 i~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~ 221 (434)
T PRK07196 143 VNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADE 221 (434)
T ss_pred eeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCC
Confidence 3579999 9999999999999999999999999999999886 445556666666554544 55799999998
Q ss_pred CCCc-ccHHHHHh
Q psy5743 486 TLFS-GTIYENIL 497 (644)
Q Consensus 486 ~Lf~-gTIreNI~ 497 (644)
..+. -+..+|..
T Consensus 222 s~~~rl~a~e~a~ 234 (434)
T PRK07196 222 SPLMRIKATELCH 234 (434)
T ss_pred ChhhhHHHHHHHH
Confidence 7664 46666765
No 475
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.47 E-value=1.3e-07 Score=103.11 Aligned_cols=161 Identities=14% Similarity=0.200 Sum_probs=91.5
Q ss_pred eeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCC
Q psy5743 421 LSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGV 500 (644)
Q Consensus 421 isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~ 500 (644)
.+..+++|+++++|||+|+||||++..|++.+.+..|.. .|++|++|+ |.-+..||+.+..
T Consensus 249 ~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~-----------------kV~LI~~Dt--~RigA~EQLr~~A 309 (484)
T PRK06995 249 EDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGAS-----------------KVALLTTDS--YRIGGHEQLRIYG 309 (484)
T ss_pred ccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCC-----------------eEEEEeCCc--cchhHHHHHHHHH
Confidence 344456799999999999999999999999987776642 688999998 5666788887532
Q ss_pred C-----CCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHH-HHHHHHHHHccCC-----CEEEeeccc
Q psy5743 501 N-----DSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQK-QRIAIARALIKKS-----KILLLDEAT 569 (644)
Q Consensus 501 ~-----~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQk-QRiaLARAll~~p-----~IliLDEaT 569 (644)
. -....+..+. ..... .+.+.....|..-|.+ |+ ..+.-+.+++.++ .+|+||..|
T Consensus 310 eilGVpv~~~~~~~Dl--~~aL~-------~L~d~d~VLIDTaGr~----~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~ 376 (484)
T PRK06995 310 KILGVPVHAVKDAADL--RLALS-------ELRNKHIVLIDTIGMS----QRDRMVSEQIAMLHGAGAPVKRLLLLNATS 376 (484)
T ss_pred HHhCCCeeccCCchhH--HHHHH-------hccCCCeEEeCCCCcC----hhhHHHHHHHHHHhccCCCCeeEEEEeCCC
Confidence 1 1000112222 22222 2333334445443322 21 1223333344443 689999888
Q ss_pred CCCCHHHHHHHHHHHHHHcCCceEEEEccCchHH----------hhcCEEEEEeCCeEE
Q psy5743 570 SALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTI----------RKSNQICVLDKGKIV 618 (644)
Q Consensus 570 SaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i----------~~aD~Iivl~~G~iv 618 (644)
..-|... +.+.... .+.+-+++|+=-++. +.-=-|..+..|+=|
T Consensus 377 ~~~~l~~---i~~~f~~--~~~~g~IlTKlDet~~~G~~l~i~~~~~lPI~yvt~GQ~V 430 (484)
T PRK06995 377 HGDTLNE---VVQAYRG--PGLAGCILTKLDEAASLGGALDVVIRYKLPLHYVSNGQRV 430 (484)
T ss_pred cHHHHHH---HHHHhcc--CCCCEEEEeCCCCcccchHHHHHHHHHCCCeEEEecCCCC
Confidence 7633221 2222222 256778888743331 112346677777644
No 476
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=98.46 E-value=2.6e-07 Score=97.98 Aligned_cols=92 Identities=23% Similarity=0.230 Sum_probs=68.0
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhccCCC--C-CcEEEECCccCCCCChHHHhcceEEEecCC-----CCCcccHHHHHh
Q psy5743 426 QSGSMTSVIGSSGSGKSTLAMLLLRLYDP--Q-NGKILIDGVDIKELDPMYLRSQIGSVSQEP-----TLFSGTIYENIL 497 (644)
Q Consensus 426 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~p--~-~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~-----~Lf~gTIreNI~ 497 (644)
++|..++|+||+||||||+++.|++++.+ . .+.|.....|+ ++..+.+++..++|.|.. .-|..+|++++.
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~Edpi-E~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR 210 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPI-EFVYDEIETISASVCQSEIPRHLNNFAAGVRNALR 210 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCc-eEeccccccccceeeeeeccccccCHHHHHHHHhc
Confidence 48999999999999999999999999853 2 34676666666 477777777778888864 368899999888
Q ss_pred cCCCCCC---CC-CHHHHHHHHHHHh
Q psy5743 498 YGVNDSS---SV-TKSDIIHAAKEAN 519 (644)
Q Consensus 498 ~g~~~~~---~~-~~~~i~~a~~~a~ 519 (644)
. +||.- +. |.|.+..+++.+.
T Consensus 211 ~-~Pd~i~vGEiRd~et~~~al~aa~ 235 (358)
T TIGR02524 211 R-KPHAILVGEARDAETISAALEAAL 235 (358)
T ss_pred c-CCCEEeeeeeCCHHHHHHHHHHHH
Confidence 6 46520 23 3444556777643
No 477
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.46 E-value=3.1e-07 Score=89.76 Aligned_cols=108 Identities=18% Similarity=0.170 Sum_probs=64.2
Q ss_pred EEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHH-----HhcCCCCCC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYEN-----ILYGVNDSS 504 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreN-----I~~g~~~~~ 504 (644)
.++|+|+||||||||++.|.+++ ..|. +.++++|.+...-+.+++ ..++.|+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~-------------------~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~-- 57 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPK-------------------VVIISQDSYYKDLSHEELEERKNNNYDHPD-- 57 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCC-------------------eEEEEecccccccccccHHHhccCCCCCCC--
Confidence 48999999999999999999998 2233 344444444432222221 1223232
Q ss_pred CCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCH
Q psy5743 505 SVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDA 574 (644)
Q Consensus 505 ~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~ 574 (644)
..+.+.+.+.+......+. +.-...+.|.|++++-.+ ...+++++|+|++++..++
T Consensus 58 ~~~~~~~~~~l~~l~~~~~-----------~~~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~ 113 (198)
T cd02023 58 AFDFDLLISHLQDLKNGKS-----------VEIPVYDFKTHSRLKETV---TVYPADVIILEGILALYDK 113 (198)
T ss_pred cccHHHHHHHHHHHHCCCC-----------EeccccccccCcccCCce---ecCCCCEEEEechhhccch
Confidence 2344444444444433222 122233566666665444 5678999999999998875
No 478
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.43 E-value=3.9e-07 Score=88.96 Aligned_cols=103 Identities=17% Similarity=0.116 Sum_probs=69.6
Q ss_pred EEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCC---cccHHHHHhcCCCCCCCC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLF---SGTIYENILYGVNDSSSV 506 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf---~gTIreNI~~g~~~~~~~ 506 (644)
+++|+|++|||||||++.+++.+.+..| +.+-..|........|....++++|+..+. +|.+... .
T Consensus 3 ~i~i~G~~GsGKTTll~~l~~~l~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~----------~ 71 (199)
T TIGR00101 3 KIGVAGPVGSGKTALIEALTRALRQKYQ-LAVITNDIYTQEDAEFLVKNSALPPERILGVETGGCPHTA----------I 71 (199)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCcCCc-EEEEeCCcCChhHHHHHHHcCCCCcCceehhhcCCCccce----------e
Confidence 6899999999999999999999988655 555556776666777777889999987652 1222111 1
Q ss_pred CHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhH
Q psy5743 507 TKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQ 546 (644)
Q Consensus 507 ~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQ 546 (644)
..+- +.....+.+++.++|.+..+.|+-.|.++|.-.
T Consensus 72 ~~~~---~~~~~~L~~l~~~~~~~D~iiIEt~G~~l~~~~ 108 (199)
T TIGR00101 72 REDA---SMNLEAVAEMEARFPPLEMVFIESGGDNLSATF 108 (199)
T ss_pred ccCH---HHHHHHHHHHHhcCCCCCEEEEECCCCCccccc
Confidence 1111 112333344555667777788888887777665
No 479
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.43 E-value=2.1e-07 Score=88.99 Aligned_cols=65 Identities=23% Similarity=0.292 Sum_probs=46.9
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhc-ceEEEecCCC-CCcccHHHHHh
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRS-QIGSVSQEPT-LFSGTIYENIL 497 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~-~i~~V~Q~~~-Lf~gTIreNI~ 497 (644)
+|+.++|+|+||||||||++.|.|++.| +.++|.++.. ...+|+ ..++.+|+.. +..-+..+|++
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~----~~i~gd~~~~--~~~~r~~~~g~~~~~~~~~~~~~~~~~~~ 68 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA----KFIDGDDLHP--AKNIDKMSQGIPLTDEDRLPWLERLNDAS 68 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC----EEECCcccCC--HhHHHHHhcCCCCCcccchHHHHHHHHHH
Confidence 6999999999999999999999999987 6899988743 334444 3556666643 22334444544
No 480
>PRK08149 ATP synthase SpaL; Validated
Probab=98.42 E-value=2.5e-07 Score=99.43 Aligned_cols=69 Identities=20% Similarity=0.266 Sum_probs=60.4
Q ss_pred CccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCC---cEEEECCccCCCCChHHHh----cceEEEecC
Q psy5743 415 AVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQN---GKILIDGVDIKELDPMYLR----SQIGSVSQE 484 (644)
Q Consensus 415 ~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~---G~I~idg~~i~~~~~~~lr----~~i~~V~Q~ 484 (644)
..+++++ +++.+||+++|+|+||+|||||++.|.+..+++. |.|-.+|.++.++..+.++ +++++|...
T Consensus 139 i~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~ 214 (428)
T PRK08149 139 VRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYAT 214 (428)
T ss_pred cEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEEC
Confidence 3689999 9999999999999999999999999999999988 9999999999988776665 456666543
No 481
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.42 E-value=2e-07 Score=91.83 Aligned_cols=44 Identities=27% Similarity=0.316 Sum_probs=36.3
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcc
Q psy5743 426 QSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSG 490 (644)
Q Consensus 426 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~g 490 (644)
|+|+.++|+|+||||||||++.|.+++++ ..+++++||.++++.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~---------------------~~~~~i~~D~~~~~~ 47 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK---------------------LEIVIISQDNYYKDQ 47 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc---------------------cCCeEecccccccCh
Confidence 57999999999999999999999999864 156677777776643
No 482
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.41 E-value=2.9e-07 Score=89.05 Aligned_cols=56 Identities=25% Similarity=0.273 Sum_probs=48.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCC
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEP 485 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~ 485 (644)
.|+.++|+||||||||||++.|.+.+.| .+.+++..+........++.+++++|+.
T Consensus 1 ~g~~i~l~G~sGsGKsTl~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (186)
T PRK10078 1 MGKLIWLMGPSGSGKDSLLAALRQREQT---QLLVAHRYITRPASAGSENHIALSEQEF 56 (186)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCCC---eEEEcCEECCCccchhHHhheeEcHHHH
Confidence 3889999999999999999999999876 5888888888776677778888888873
No 483
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.37 E-value=2.4e-07 Score=88.99 Aligned_cols=78 Identities=32% Similarity=0.393 Sum_probs=57.2
Q ss_pred CCEEEEECCCCCcHHHHHHHHhccCC------------CCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHH
Q psy5743 428 GSMTSVIGSSGSGKSTLAMLLLRLYD------------PQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYEN 495 (644)
Q Consensus 428 G~~vaIvG~SGsGKSTLl~lL~g~~~------------p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreN 495 (644)
|++++|+||||||||||++.|.+.++ |..|+ ++|++..-++.+.+.+.+ +++.++..+++.+|
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~~g~--~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 75 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGE--VDGVDYFFVSKEEFEEMI---AAGEFLEWAEVHGN 75 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCccccccccceeeCCCCCC--cCCcEEEEecHHHHHHHH---HcCCcEEEEEECCe
Confidence 78999999999999999999999874 34444 366666666666666553 57788888888888
Q ss_pred HhcCCCCCCCCCHHHHHHHHHH
Q psy5743 496 ILYGVNDSSSVTKSDIIHAAKE 517 (644)
Q Consensus 496 I~~g~~~~~~~~~~~i~~a~~~ 517 (644)
. +| ...+.+.++++.
T Consensus 76 ~-y~------~~~~~i~~~~~~ 90 (180)
T TIGR03263 76 Y-YG------TPKSPVEEALAA 90 (180)
T ss_pred e-eC------CcHHHHHHHHHC
Confidence 4 66 445666666543
No 484
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=98.37 E-value=8.8e-06 Score=96.11 Aligned_cols=47 Identities=19% Similarity=0.266 Sum_probs=41.0
Q ss_pred ceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccC
Q psy5743 420 DLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDI 466 (644)
Q Consensus 420 ~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i 466 (644)
-+|+.+.++..++|+|+||||||||++.|++.+....++|.+-+.+-
T Consensus 438 ~~n~~~~~~~~~~i~G~tGsGKS~l~~~l~~~~~~~~~~i~~~D~~~ 484 (800)
T PRK13898 438 YFNFHVRDVGHTLIIGPTGAGKTVLMNFLCAQAMKFSPRMFFFDKDR 484 (800)
T ss_pred EEEEEEcCCCEEEEECCCCCcHHHHHHHHHhhcccCCCeEEEeCCCc
Confidence 45788888999999999999999999999999888888888766543
No 485
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.36 E-value=1.7e-07 Score=104.12 Aligned_cols=156 Identities=13% Similarity=0.154 Sum_probs=90.2
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHH--hccCCCCCcEEEECCccCCCCChHHHhcc---eEEEecCCCCCcccHHHHHhc
Q psy5743 424 KIQSGSMTSVIGSSGSGKSTLAMLL--LRLYDPQNGKILIDGVDIKELDPMYLRSQ---IGSVSQEPTLFSGTIYENILY 498 (644)
Q Consensus 424 ~i~~G~~vaIvG~SGsGKSTLl~lL--~g~~~p~~G~I~idg~~i~~~~~~~lr~~---i~~V~Q~~~Lf~gTIreNI~~ 498 (644)
=+++|..+.|.|++|||||||..-. .|.-++-+.-+++... -++++++++ +|+-.|+..- .+++.+
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e----E~~~~l~~~~~~~G~~~~~~~~-----~g~l~~ 87 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE----ESPQDIIKNARSFGWDLQKLVD-----EGKLFI 87 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe----cCHHHHHHHHHHcCCCHHHHhh-----cCceEE
Confidence 4889999999999999999999976 3555545667777652 244444443 3333222110 011111
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHH--HHHccCCCEEEeecccCCCCHHH
Q psy5743 499 GVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIA--RALIKKSKILLLDEATSALDAEN 576 (644)
Q Consensus 499 g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLA--RAll~~p~IliLDEaTSaLD~~~ 576 (644)
-+.. ........++..++ +..+......+|+||+||+.|+ .++..+|+.. ...
T Consensus 88 ~~~~----~~~~~~~~~~~~~l-----------~~~l~~i~~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~ 142 (484)
T TIGR02655 88 LDAS----PDPEGQDVVGGFDL-----------SALIERINYAIRKYKAKRVSIDSVTAVFQQYDAV----------SVV 142 (484)
T ss_pred EecC----chhccccccccCCH-----------HHHHHHHHHHHHHhCCcEEEEeehhHhhhhcCch----------HHH
Confidence 1100 00000011111222 2222333357899999999999 6776665443 345
Q ss_pred HHHHHHHHHHHc-CCceEEEEccCchHH----------hhcCEEEEEe
Q psy5743 577 EYLVQSAIEKLI-EGKTVLTIAHRLSTI----------RKSNQICVLD 613 (644)
Q Consensus 577 e~~i~~~l~~~~-~~~TvI~IaHrl~~i----------~~aD~Iivl~ 613 (644)
.+.+.+.++.+. .++|+|+++|..+.. --||.|+.|+
T Consensus 143 r~~l~~Li~~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 143 RREIFRLVARLKQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred HHHHHHHHHHHHHCCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 556666665543 489999999987531 2469999887
No 486
>PLN02796 D-glycerate 3-kinase
Probab=98.33 E-value=2.2e-07 Score=96.51 Aligned_cols=62 Identities=21% Similarity=0.327 Sum_probs=53.9
Q ss_pred CccccceeEEE---eCCCE-----EEEECCCCCcHHHHHHHHhccCCCC---CcEEEECCccCCCCChHHHhc
Q psy5743 415 AVILNDLSLKI---QSGSM-----TSVIGSSGSGKSTLAMLLLRLYDPQ---NGKILIDGVDIKELDPMYLRS 476 (644)
Q Consensus 415 ~~vL~~isl~i---~~G~~-----vaIvG~SGsGKSTLl~lL~g~~~p~---~G~I~idg~~i~~~~~~~lr~ 476 (644)
..+++++++.+ ++|+. ++|+|+||||||||++.|.+++++. .|.|.+||..+...+...+++
T Consensus 79 ~~il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYLt~~e~~~L~~ 151 (347)
T PLN02796 79 LWCEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYLTAADQAKLAE 151 (347)
T ss_pred HHHHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcccchhhHHHHHh
Confidence 36788999988 67887 9999999999999999999999875 688999999988777777765
No 487
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=98.32 E-value=3.1e-07 Score=84.17 Aligned_cols=64 Identities=33% Similarity=0.461 Sum_probs=52.7
Q ss_pred EEEECCCCCcHHHHHHHHhccCCC-------------CCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHh
Q psy5743 431 TSVIGSSGSGKSTLAMLLLRLYDP-------------QNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENIL 497 (644)
Q Consensus 431 vaIvG~SGsGKSTLl~lL~g~~~p-------------~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~ 497 (644)
++|+||||||||||++.|++.+++ ..|+ ++|++..-++.+++++. +.|+.++..++...| .
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~~~e--~~g~~~~~v~~~~~~~~---~~~~~f~e~~~~~~~-~ 75 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGE--VDGVDYHFVSKEEFERL---IENGEFLEWAEFHGN-Y 75 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCccceecccccccCCCCCc--cCCceeEEeCHHHHHHH---HHcCCeEEEEEEcCE-E
Confidence 789999999999999999999754 4455 48888888888888764 678888998999988 5
Q ss_pred cCC
Q psy5743 498 YGV 500 (644)
Q Consensus 498 ~g~ 500 (644)
+|.
T Consensus 76 yg~ 78 (137)
T cd00071 76 YGT 78 (137)
T ss_pred ecC
Confidence 774
No 488
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.30 E-value=1.2e-06 Score=85.25 Aligned_cols=53 Identities=21% Similarity=0.275 Sum_probs=40.4
Q ss_pred cccCCCCCCChhHHHHHH--HHHHHcc-CCCEEEeecccCCCCHHHHHHHHHHHHHHcCC
Q psy5743 534 IVGERGIMLSGGQKQRIA--IARALIK-KSKILLLDEATSALDAENEYLVQSAIEKLIEG 590 (644)
Q Consensus 534 ~ige~G~~LSGGQkQRia--LARAll~-~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~ 590 (644)
.++.....+|+||+|++. +++.+-. +++++ |||++|.++-..+.+.|.+..++
T Consensus 140 iv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~----~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 140 IVLTKADKLKKGERKKQLKKVRKALKFGDDEVI----LFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred EEEECcccCCHHHHHHHHHHHHHHHHhcCCceE----EEEcCCCCCHHHHHHHHHHHhcC
Confidence 445556678999999987 6677654 34443 99999999999999999887654
No 489
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.29 E-value=4e-06 Score=91.06 Aligned_cols=176 Identities=20% Similarity=0.179 Sum_probs=110.9
Q ss_pred CccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCCh---HH-----HhcceEEEecCCC
Q psy5743 415 AVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDP---MY-----LRSQIGSVSQEPT 486 (644)
Q Consensus 415 ~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~---~~-----lr~~i~~V~Q~~~ 486 (644)
..+++++ +++.+||+++|+|+||+|||||++.|.|..+|+.|.+...|..-+++.. +. +++.+.++.+.
T Consensus 151 i~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~~-- 227 (440)
T TIGR01026 151 VRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVATS-- 227 (440)
T ss_pred eeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEeecchHHHHHHHHHhcccccceEEEEEECC--
Confidence 4689999 9999999999999999999999999999999999887776654443321 11 11222222221
Q ss_pred CCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCcccccc-CCCCCCChhHHHHHHHHHHHccCCCEEEe
Q psy5743 487 LFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVG-ERGIMLSGGQKQRIAIARALIKKSKILLL 565 (644)
Q Consensus 487 Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ig-e~G~~LSGGQkQRiaLARAll~~p~IliL 565 (644)
.+..-++...+.-...+.|+..+ +|+|-.+= +.=.+ .|+|+=-= =+.+
T Consensus 228 -----------------d~~p~~r~~~~~~a~t~AE~frd--~G~~Vll~~DslTr----------~A~A~REi--sl~~ 276 (440)
T TIGR01026 228 -----------------DQSPLLRLKGAYVATAIAEYFRD--QGKDVLLLMDSVTR----------FAMAQREI--GLAA 276 (440)
T ss_pred -----------------CCCHHHHHHHHHHHHHHHHHHHH--CCCCEEEEEeChHH----------HHHHHHHH--HHhc
Confidence 11233444444444444455543 46665332 22221 22222000 0112
Q ss_pred ecc--cCCCCHHHHHHHHHHHHHHcC-Cc-------eEEEEccCchHHhhcCEEEEEeCCeEEEecChhH
Q psy5743 566 DEA--TSALDAENEYLVQSAIEKLIE-GK-------TVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAH 625 (644)
Q Consensus 566 DEa--TSaLD~~~e~~i~~~l~~~~~-~~-------TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~e 625 (644)
.|| +.+.|+..-..+.+.+++... ++ |+++-+|++ +=.-+|.+.-+.||+|+-.++-++
T Consensus 277 ge~P~~~Gypp~~~~~l~~l~ERag~~~~GSIT~i~tVl~~~~d~-~dpi~d~~~~i~dG~ivLsr~la~ 345 (440)
T TIGR01026 277 GEPPATKGYTPSVFSTLPRLLERAGASGKGSITAFYTVLVEGDDM-NEPIADSVRGILDGHIVLSRALAQ 345 (440)
T ss_pred CCCCcccccChhHHHHHHHHHHHhccCCCCeeeEEEEEEccCcCC-CcchhhhhccccceEEEEecchhh
Confidence 443 568999888888777766543 46 888889998 445789999999999997776544
No 490
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.28 E-value=1.5e-06 Score=83.50 Aligned_cols=62 Identities=23% Similarity=0.243 Sum_probs=48.1
Q ss_pred CCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEE-----------CCccCCCCChHHHh-----cceEEEecCCCCCcc
Q psy5743 428 GSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILI-----------DGVDIKELDPMYLR-----SQIGSVSQEPTLFSG 490 (644)
Q Consensus 428 G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i-----------dg~~i~~~~~~~lr-----~~i~~V~Q~~~Lf~g 490 (644)
|+.++|+||||||||||++.|++.+.+. |.+.+ +|.+....+.+++. +.++.+.|...++.|
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 78 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAGD-PRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYG 78 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCcC-CcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCcccc
Confidence 6789999999999999999999998654 65544 77777777776664 348888888655554
No 491
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.27 E-value=1.2e-06 Score=108.01 Aligned_cols=61 Identities=23% Similarity=0.257 Sum_probs=54.5
Q ss_pred CCCCCChhHHHHHH----HHHH--------HccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCc
Q psy5743 538 RGIMLSGGQKQRIA----IARA--------LIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRL 600 (644)
Q Consensus 538 ~G~~LSGGQkQRia----LARA--------ll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl 600 (644)
....||||||||++ +|+| +..+|++++|||||++||+.+...+++.+.++ +.++|++||++
T Consensus 1244 ~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l--~~~~i~~s~~~ 1316 (1353)
T TIGR02680 1244 RFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL--DLDFVMTSERE 1316 (1353)
T ss_pred cccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh--CCCEEEEccch
Confidence 35789999999996 6866 44699999999999999999999999999988 89999999875
No 492
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.27 E-value=8.5e-06 Score=74.27 Aligned_cols=54 Identities=22% Similarity=0.222 Sum_probs=39.6
Q ss_pred HHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc------CCceEEEEccCch
Q psy5743 547 KQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI------EGKTVLTIAHRLS 601 (644)
Q Consensus 547 kQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~------~~~TvI~IaHrl~ 601 (644)
++.....++...++.++++||+-.. +......+.+.+.... ++.++|++++...
T Consensus 72 ~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 5667777788889999999997654 5556667777776653 4667888888654
No 493
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.27 E-value=2.3e-06 Score=104.98 Aligned_cols=44 Identities=32% Similarity=0.410 Sum_probs=37.1
Q ss_pred ceeEEEeCCCEEEEECCCCCcHHHHHHHHhccC-CCCCcEEEECC
Q psy5743 420 DLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLY-DPQNGKILIDG 463 (644)
Q Consensus 420 ~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~-~p~~G~I~idg 463 (644)
-+++..++++.++|+|++|+|||||++.+.+.. ...+|.+++++
T Consensus 199 lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~ 243 (1153)
T PLN03210 199 LLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDR 243 (1153)
T ss_pred HHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeec
Confidence 356777889999999999999999999995544 45689999986
No 494
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.26 E-value=2.2e-06 Score=102.63 Aligned_cols=78 Identities=23% Similarity=0.343 Sum_probs=66.8
Q ss_pred CCCCCChhHHHHHHH------HHHHccC--CCEEEeecccCCCCHHHHHHHHHHHHHHcC-CceEEEEccCchHHhhcCE
Q psy5743 538 RGIMLSGGQKQRIAI------ARALIKK--SKILLLDEATSALDAENEYLVQSAIEKLIE-GKTVLTIAHRLSTIRKSNQ 608 (644)
Q Consensus 538 ~G~~LSGGQkQRiaL------ARAll~~--p~IliLDEaTSaLD~~~e~~i~~~l~~~~~-~~TvI~IaHrl~~i~~aD~ 608 (644)
.-..|||||+=.++| |..+-.+ -+.++|||||.+||+++-..+.++|.++.. +++||||||..+....+|.
T Consensus 812 ~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~eel~e~~~~ 891 (908)
T COG0419 812 PIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVEELKERADV 891 (908)
T ss_pred ccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHhCCe
Confidence 346899999886555 4555566 699999999999999999999999988765 5999999999999999999
Q ss_pred EEEEeCC
Q psy5743 609 ICVLDKG 615 (644)
Q Consensus 609 Iivl~~G 615 (644)
++.++..
T Consensus 892 ~i~V~k~ 898 (908)
T COG0419 892 RIRVKKD 898 (908)
T ss_pred EEEEEec
Confidence 9998753
No 495
>PRK05480 uridine/cytidine kinase; Provisional
Probab=98.26 E-value=1.8e-06 Score=85.18 Aligned_cols=71 Identities=20% Similarity=0.264 Sum_probs=51.8
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcc---cH--HHHHhcCC
Q psy5743 426 QSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSG---TI--YENILYGV 500 (644)
Q Consensus 426 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~g---TI--reNI~~g~ 500 (644)
+++..|+|+|+||||||||++.|.+.++ ...+++++||++.++. +. +.+..++.
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~---------------------~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~ 62 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELG---------------------DESIAVIPQDSYYKDQSHLSFEERVKTNYDH 62 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhC---------------------CCceEEEeCCccccCcccCCHHHhcccCccC
Confidence 4788999999999999999999999872 1268889999988755 23 34455555
Q ss_pred CCCCCCCHHHHHHHHHHHh
Q psy5743 501 NDSSSVTKSDIIHAAKEAN 519 (644)
Q Consensus 501 ~~~~~~~~~~i~~a~~~a~ 519 (644)
|+ ..+.+.+.+.++...
T Consensus 63 ~~--~~~~~~l~~~l~~l~ 79 (209)
T PRK05480 63 PD--AFDHDLLIEHLKALK 79 (209)
T ss_pred cc--cccHHHHHHHHHHHH
Confidence 53 356667766665554
No 496
>PRK09183 transposase/IS protein; Provisional
Probab=98.24 E-value=5e-06 Score=84.62 Aligned_cols=53 Identities=26% Similarity=0.383 Sum_probs=40.2
Q ss_pred EEEEEEEEcCCCCCC---ccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCC
Q psy5743 401 DFNNIRFSYPSRPDA---VILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDP 454 (644)
Q Consensus 401 ~~~~vsf~Y~~~~~~---~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p 454 (644)
.+++..|++....++ ..|.+++| +++|+.+.|+||+|+|||||+.+|......
T Consensus 73 ~l~~fd~~~~~~~~~~~i~~L~~~~~-i~~~~~v~l~Gp~GtGKThLa~al~~~a~~ 128 (259)
T PRK09183 73 TFEEYDFTFATGAPQKQLQSLRSLSF-IERNENIVLLGPSGVGKTHLAIALGYEAVR 128 (259)
T ss_pred cHhhcccccCCCCCHHHHHHHhcCCc-hhcCCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 455666666533222 23778888 999999999999999999999999766543
No 497
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.19 E-value=1.5e-06 Score=93.88 Aligned_cols=104 Identities=16% Similarity=0.205 Sum_probs=73.3
Q ss_pred ccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCC-CCcEEEE---CCccCCCCChHHHh---cceEEE-----ec
Q psy5743 416 VILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDP-QNGKILI---DGVDIKELDPMYLR---SQIGSV-----SQ 483 (644)
Q Consensus 416 ~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p-~~G~I~i---dg~~i~~~~~~~lr---~~i~~V-----~Q 483 (644)
.+++++ |++.+||+++|+|+||||||||++.|+|+.++ ..|.|.+ +|.++.++..+.++ ...++| .|
T Consensus 153 ~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats~q 231 (442)
T PRK06315 153 RCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTSDQ 231 (442)
T ss_pred EEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCCCC
Confidence 468887 99999999999999999999999999999854 4466666 55788777666665 235555 88
Q ss_pred CCC------CCcccHHHHHhcCCCCC--CCCCHHHHHHHHHHHhh
Q psy5743 484 EPT------LFSGTIYENILYGVNDS--SSVTKSDIIHAAKEANA 520 (644)
Q Consensus 484 ~~~------Lf~gTIreNI~~g~~~~--~~~~~~~i~~a~~~a~l 520 (644)
+|. ....+|.|.+..-..+. ..-+..+..++++.+++
T Consensus 232 ~p~~rlnp~~va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L 276 (442)
T PRK06315 232 SSQLRLNAAYVGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGL 276 (442)
T ss_pred CHHHHhhHHHHHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCc
Confidence 653 34556888886432210 01135566677777776
No 498
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=98.18 E-value=2.9e-06 Score=85.16 Aligned_cols=72 Identities=26% Similarity=0.337 Sum_probs=48.4
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhcc-CCC------CCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHH
Q psy5743 424 KIQSGSMTSVIGSSGSGKSTLAMLLLRL-YDP------QNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENI 496 (644)
Q Consensus 424 ~i~~G~~vaIvG~SGsGKSTLl~lL~g~-~~p------~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI 496 (644)
=+++|+++.|+|++|||||||+.-++.. ..| ..+.+++++.+ ..+++.+.+.. |..-....++.+|+
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~--~~~~~rl~~~~----~~~~~~~~~~~~~i 88 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG--TFRPERLVQIA----ERFGLDPEEVLDNI 88 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC--CcCHHHHHHHH----HHhccChHhHhcCE
Confidence 3889999999999999999999988633 334 37889999865 33444443321 11111234677788
Q ss_pred hcCCC
Q psy5743 497 LYGVN 501 (644)
Q Consensus 497 ~~g~~ 501 (644)
.+.++
T Consensus 89 ~~~~~ 93 (235)
T cd01123 89 YVARA 93 (235)
T ss_pred EEEec
Confidence 77654
No 499
>PRK15494 era GTPase Era; Provisional
Probab=98.18 E-value=1.1e-06 Score=92.95 Aligned_cols=56 Identities=23% Similarity=0.296 Sum_probs=50.6
Q ss_pred CCCccEEEEEEEEEcCCCCCCccccceeEEEeCCC-------EEEEECCCCCcHHHHHHHHhccC
Q psy5743 395 SLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGS-------MTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 395 ~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~-------~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
...|.+++++++|+||. .++.++++++++++|+ +++|+|++|+|||||++.|.|.-
T Consensus 14 ~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~k~~kV~ivG~~nvGKSTLin~l~~~k 76 (339)
T PRK15494 14 EFKGDTEALAAAVREDA--STGSTSKLPLEVKFGKMSNQKTVSVCIIGRPNSGKSTLLNRIIGEK 76 (339)
T ss_pred hhCCccccccccccCCC--CcccccCCccccccccccccceeEEEEEcCCCCCHHHHHHHHhCCc
Confidence 45678999999999993 4679999999999999 99999999999999999998864
No 500
>COG3044 Predicted ATPase of the ABC class [General function prediction only]
Probab=98.18 E-value=1.8e-05 Score=82.06 Aligned_cols=153 Identities=24% Similarity=0.276 Sum_probs=106.9
Q ss_pred eEEEeCCCEEEEECCCCCcHHHHHHHHhccC-CCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCC
Q psy5743 422 SLKIQSGSMTSVIGSSGSGKSTLAMLLLRLY-DPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGV 500 (644)
Q Consensus 422 sl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~-~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~ 500 (644)
-+-|++| +++|+|++=-|||||+..+.+=. +.--| ||.. .+
T Consensus 237 gmgIp~g-it~ItG~nfhGKTTLl~Aie~gvdnHipG----DGRE-----------~v---------------------- 278 (554)
T COG3044 237 GMGIPQG-ITLITGGNFHGKTTLLTAIERGVDNHIPG----DGRE-----------RV---------------------- 278 (554)
T ss_pred ccCCCcc-eEEEecCCccchhHHHHHHHhcccccCCC----CCce-----------EE----------------------
Confidence 3568899 99999999999999999997533 22112 2311 10
Q ss_pred CCCCCCCHHHHHH-------HHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCC
Q psy5743 501 NDSSSVTKSDIIH-------AAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALD 573 (644)
Q Consensus 501 ~~~~~~~~~~i~~-------a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD 573 (644)
+++....+ +..-..+.-||+.||+|-||+---.| .=||--+|=-.|=||+=...+++++||-|||..
T Consensus 279 -----VTd~~lakaeae~gr~vsg~D~SlFi~~LPggkdTp~fvtg-dASGStsmAa~IQeaiEagak~lliDED~sAtN 352 (554)
T COG3044 279 -----VTDVKLAKAEAEEGRCVSGLDLSLFINHLPGGKDTPDFVTG-DASGSTSMAAWIQEAIEAGAKTLLIDEDTSATN 352 (554)
T ss_pred -----EehhhhhhhhcccceeeeccchHHHHHhCCCCCCCcccccC-CCCchhHHHHHHHHHHHcCCcEEEEccCcchhh
Confidence 11111111 11223345689999999999876655 359999999999999999999999999999974
Q ss_pred HH----------HH---HHHHHHHHHHcCC-ceEEEEccCchH-HhhcCEEEEEeCCeEE
Q psy5743 574 AE----------NE---YLVQSAIEKLIEG-KTVLTIAHRLST-IRKSNQICVLDKGKIV 618 (644)
Q Consensus 574 ~~----------~e---~~i~~~l~~~~~~-~TvI~IaHrl~~-i~~aD~Iivl~~G~iv 618 (644)
-- .+ ..+.+-+.++..+ -++|+||--+.. +..+|+++||+|-+-.
T Consensus 353 llvrdVlake~eG~rtl~pl~dei~s~~gd~iS~iaVtgglddlla~aDRaIvMeDhrpk 412 (554)
T COG3044 353 LLVRDVLAKESEGERTLTPLVDEIGSLRGDLISTIAVTGGLDDLLAVADRAIVMEDHRPK 412 (554)
T ss_pred eehhhHHHHHhcCcccchHHHHhhhhhccCceEEEEEeccchhhhhhcceEEEecccCcc
Confidence 31 22 2334444444443 788999888775 5789999999997755
Done!