Query psy5743
Match_columns 644
No_of_seqs 266 out of 2391
Neff 8.3
Searched_HMMs 29240
Date Fri Aug 16 16:53:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5743.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5743hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 100.0 4E-105 1E-109 973.3 72.3 577 62-642 58-654 (1321)
2 4f4c_A Multidrug resistance pr 100.0 1E-102 3E-107 952.0 53.1 575 66-643 740-1318(1321)
3 3qf4_A ABC transporter, ATP-bi 100.0 7E-100 2E-104 859.5 71.4 569 67-643 12-580 (587)
4 4a82_A Cystic fibrosis transme 100.0 3E-100 1E-104 861.8 66.8 572 66-642 2-577 (578)
5 3qf4_B Uncharacterized ABC tra 100.0 6E-100 2E-104 862.3 65.1 570 63-642 22-591 (598)
6 2yl4_A ATP-binding cassette SU 100.0 1.5E-97 5E-102 843.4 75.6 579 65-643 6-585 (595)
7 3b5x_A Lipid A export ATP-bind 100.0 5.7E-97 2E-101 836.5 78.2 570 64-643 11-581 (582)
8 3b60_A Lipid A export ATP-bind 100.0 6.3E-97 2E-101 836.2 72.2 570 64-643 11-581 (582)
9 3g5u_A MCG1178, multidrug resi 100.0 1.6E-94 5.4E-99 877.8 60.7 574 65-642 34-626 (1284)
10 3g5u_A MCG1178, multidrug resi 100.0 7.6E-89 2.6E-93 827.9 59.3 576 66-643 693-1272(1284)
11 3nh6_A ATP-binding cassette SU 100.0 9.3E-72 3.2E-76 576.0 26.7 277 360-642 14-290 (306)
12 2ff7_A Alpha-hemolysin translo 100.0 9E-60 3.1E-64 474.7 30.3 241 398-642 6-246 (247)
13 2ghi_A Transport protein; mult 100.0 1.6E-58 5.4E-63 469.2 27.6 240 398-642 16-255 (260)
14 1mv5_A LMRA, multidrug resista 100.0 8.5E-59 2.9E-63 467.2 21.2 237 400-642 2-239 (243)
15 2ixe_A Antigen peptide transpo 100.0 8.6E-58 2.9E-62 466.3 27.9 241 398-642 15-258 (271)
16 3gd7_A Fusion complex of cysti 100.0 4.5E-56 1.5E-60 473.0 26.5 236 395-636 15-250 (390)
17 2cbz_A Multidrug resistance-as 100.0 5.8E-55 2E-59 437.1 23.6 225 399-642 3-230 (237)
18 2pze_A Cystic fibrosis transme 100.0 2.1E-54 7.2E-59 431.0 25.5 221 399-638 6-227 (229)
19 3tui_C Methionine import ATP-b 100.0 3.2E-52 1.1E-56 437.1 25.2 227 398-636 23-261 (366)
20 3tif_A Uncharacterized ABC tra 100.0 1.7E-51 5.7E-56 411.5 22.5 218 400-627 2-233 (235)
21 3gfo_A Cobalt import ATP-bindi 100.0 1.7E-51 5.7E-56 419.6 22.4 217 399-629 7-234 (275)
22 1ji0_A ABC transporter; ATP bi 100.0 6.1E-51 2.1E-55 408.9 25.6 220 399-629 6-229 (240)
23 2bbs_A Cystic fibrosis transme 100.0 4E-51 1.4E-55 419.9 22.1 238 373-637 17-255 (290)
24 4g1u_C Hemin import ATP-bindin 100.0 2.5E-50 8.4E-55 409.9 24.9 216 399-628 11-237 (266)
25 2olj_A Amino acid ABC transpor 100.0 2.9E-50 1E-54 408.0 25.2 221 399-634 24-254 (263)
26 3fvq_A Fe(3+) IONS import ATP- 100.0 8.4E-50 2.9E-54 418.8 26.4 224 399-636 4-236 (359)
27 1vpl_A ABC transporter, ATP-bi 100.0 7.3E-50 2.5E-54 403.8 23.3 215 398-628 14-235 (256)
28 1b0u_A Histidine permease; ABC 100.0 5.9E-50 2E-54 406.6 22.5 218 399-630 6-244 (262)
29 2yz2_A Putative ABC transporte 100.0 9.5E-50 3.3E-54 406.3 24.0 216 400-629 3-228 (266)
30 3rlf_A Maltose/maltodextrin im 100.0 7E-50 2.4E-54 422.1 23.7 221 399-636 3-231 (381)
31 2pcj_A ABC transporter, lipopr 100.0 4.8E-50 1.6E-54 398.2 20.4 211 399-623 4-223 (224)
32 1g6h_A High-affinity branched- 100.0 1.2E-49 4.1E-54 403.7 22.3 213 399-625 7-239 (257)
33 2yyz_A Sugar ABC transporter, 100.0 5.9E-49 2E-53 413.8 26.5 220 399-635 3-230 (359)
34 1z47_A CYSA, putative ABC-tran 100.0 3E-49 1E-53 415.0 23.8 221 398-634 13-241 (355)
35 2it1_A 362AA long hypothetical 100.0 3.3E-49 1.1E-53 416.2 23.7 220 399-635 3-230 (362)
36 2onk_A Molybdate/tungstate ABC 100.0 3.6E-49 1.2E-53 395.2 21.6 212 400-630 2-218 (240)
37 3d31_A Sulfate/molybdate ABC t 100.0 3.6E-49 1.2E-53 414.1 22.4 218 400-634 2-223 (348)
38 2ihy_A ABC transporter, ATP-bi 100.0 2.3E-49 7.9E-54 405.2 20.4 216 399-628 21-252 (279)
39 1v43_A Sugar-binding transport 100.0 1.2E-48 4.3E-53 413.2 25.4 220 399-635 11-238 (372)
40 2qi9_C Vitamin B12 import ATP- 100.0 1E-48 3.5E-53 393.8 23.5 208 400-628 5-222 (249)
41 1oxx_K GLCV, glucose, ABC tran 100.0 6.9E-49 2.3E-53 413.6 23.1 220 400-634 4-236 (353)
42 1g29_1 MALK, maltose transport 100.0 1.7E-48 5.8E-53 413.0 22.4 219 400-635 4-236 (372)
43 2d2e_A SUFC protein; ABC-ATPas 100.0 1.6E-48 5.4E-53 393.8 21.0 213 400-625 4-230 (250)
44 2zu0_C Probable ATP-dependent 100.0 9.7E-48 3.3E-52 391.4 21.7 215 399-627 20-253 (267)
45 2pjz_A Hypothetical protein ST 100.0 1.3E-47 4.5E-52 388.6 20.3 209 400-628 2-215 (263)
46 2nq2_C Hypothetical ABC transp 100.0 2.1E-47 7.2E-52 385.7 21.3 210 400-638 5-225 (253)
47 1sgw_A Putative ABC transporte 100.0 8.2E-47 2.8E-51 371.0 14.9 199 399-618 10-211 (214)
48 2v9p_A Replication protein E1; 100.0 2.6E-45 9E-50 377.2 -16.0 241 329-642 34-276 (305)
49 3ozx_A RNAse L inhibitor; ATP 100.0 4.2E-37 1.4E-41 341.5 19.1 202 399-627 269-476 (538)
50 1yqt_A RNAse L inhibitor; ATP- 100.0 2.1E-37 7.3E-42 344.8 16.3 200 399-628 287-493 (538)
51 3bk7_A ABC transporter ATP-bin 100.0 3.4E-37 1.2E-41 346.6 17.6 200 399-628 357-563 (607)
52 2iw3_A Elongation factor 3A; a 100.0 3.5E-37 1.2E-41 357.4 13.5 198 400-622 672-981 (986)
53 3j16_B RLI1P; ribosome recycli 100.0 5.5E-36 1.9E-40 336.1 15.8 200 403-629 350-560 (608)
54 3bk7_A ABC transporter ATP-bin 100.0 2.8E-36 9.6E-41 339.1 13.1 197 399-615 83-304 (607)
55 3ux8_A Excinuclease ABC, A sub 100.0 1.3E-35 4.5E-40 340.7 16.1 215 414-637 30-307 (670)
56 3ux8_A Excinuclease ABC, A sub 100.0 9.8E-36 3.4E-40 341.7 14.3 206 415-633 335-645 (670)
57 1yqt_A RNAse L inhibitor; ATP- 100.0 4.9E-36 1.7E-40 333.9 11.3 196 400-615 21-234 (538)
58 2iw3_A Elongation factor 3A; a 100.0 8.8E-34 3E-38 328.9 26.9 197 399-628 435-635 (986)
59 3pih_A Uvrabc system protein A 100.0 1.2E-34 4.1E-39 336.2 19.3 219 399-638 589-912 (916)
60 3j16_B RLI1P; ribosome recycli 100.0 1.9E-33 6.6E-38 315.5 15.0 197 404-618 82-300 (608)
61 3ozx_A RNAse L inhibitor; ATP 100.0 5.6E-34 1.9E-38 316.4 9.3 193 403-616 3-214 (538)
62 2vf7_A UVRA2, excinuclease ABC 100.0 3.1E-32 1.1E-36 313.5 18.9 211 398-630 501-829 (842)
63 4aby_A DNA repair protein RECN 100.0 2.9E-32 1E-36 295.9 15.4 201 417-621 50-381 (415)
64 2npi_A Protein CLP1; CLP1-PCF1 100.0 7.5E-36 2.6E-40 325.1 -14.5 194 399-628 118-338 (460)
65 2r6f_A Excinuclease ABC subuni 100.0 1E-31 3.6E-36 309.0 18.7 210 399-630 629-944 (972)
66 2ygr_A Uvrabc system protein A 100.0 4.2E-31 1.5E-35 305.1 19.2 211 399-631 647-963 (993)
67 1e69_A Chromosome segregation 100.0 1.5E-29 5.2E-34 265.0 15.7 206 420-626 17-311 (322)
68 3b85_A Phosphate starvation-in 100.0 1.4E-30 4.7E-35 254.8 -4.1 155 415-617 13-172 (208)
69 2pt7_A CAG-ALFA; ATPase, prote 99.9 9.6E-32 3.3E-36 281.7 -15.7 206 334-617 75-292 (330)
70 1z6g_A Guanylate kinase; struc 99.9 7.4E-31 2.5E-35 259.4 -9.7 165 417-614 12-193 (218)
71 4gp7_A Metallophosphoesterase; 99.9 1.7E-27 5.7E-32 226.2 4.1 150 420-610 1-169 (171)
72 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 1.3E-25 4.5E-30 238.6 16.2 83 537-619 275-364 (365)
73 1ye8_A Protein THEP1, hypothet 99.9 7.3E-28 2.5E-32 229.8 -1.8 147 430-619 2-159 (178)
74 2dpy_A FLII, flagellum-specifi 99.9 5.6E-28 1.9E-32 261.7 -6.6 195 398-628 130-344 (438)
75 2vf7_A UVRA2, excinuclease ABC 99.9 4.1E-24 1.4E-28 246.2 15.7 107 530-636 367-483 (842)
76 1tq4_A IIGP1, interferon-induc 99.9 1.2E-26 4.1E-31 248.2 -5.2 168 415-610 36-248 (413)
77 3aez_A Pantothenate kinase; tr 99.9 6.8E-27 2.3E-31 242.7 -11.0 201 369-616 16-246 (312)
78 2eyu_A Twitching motility prot 99.9 4.5E-27 1.5E-31 238.1 -12.8 186 400-601 6-241 (261)
79 2ewv_A Twitching motility prot 99.9 2E-26 6.9E-31 245.2 -11.8 178 416-602 126-353 (372)
80 2f1r_A Molybdopterin-guanine d 99.9 3.7E-26 1.3E-30 216.1 -9.4 111 429-563 3-125 (171)
81 3sop_A Neuronal-specific septi 99.9 3.2E-25 1.1E-29 225.6 -3.2 150 430-604 4-154 (270)
82 3b9q_A Chloroplast SRP recepto 99.9 6.3E-24 2.2E-28 219.3 4.2 175 419-618 91-285 (302)
83 2o5v_A DNA replication and rep 99.9 1E-22 3.5E-27 214.5 12.5 82 541-627 265-355 (359)
84 1lvg_A Guanylate kinase, GMP k 99.9 1.3E-25 4.5E-30 218.3 -10.8 168 425-627 1-182 (198)
85 2og2_A Putative signal recogni 99.9 5.6E-23 1.9E-27 216.1 4.6 174 419-617 148-341 (359)
86 2obl_A ESCN; ATPase, hydrolase 99.9 3.3E-23 1.1E-27 217.8 0.8 193 399-626 45-253 (347)
87 2i3b_A HCR-ntpase, human cance 99.8 5.8E-24 2E-28 204.5 -6.3 159 428-621 1-169 (189)
88 2gza_A Type IV secretion syste 99.8 9E-26 3.1E-30 239.5 -22.3 224 322-555 51-301 (361)
89 1znw_A Guanylate kinase, GMP k 99.8 2.8E-23 9.7E-28 203.3 -3.9 178 414-613 8-202 (207)
90 3pih_A Uvrabc system protein A 99.8 2.6E-21 9E-26 224.6 8.5 166 444-631 384-563 (916)
91 3asz_A Uridine kinase; cytidin 99.8 3.9E-23 1.3E-27 202.7 -6.6 145 425-600 3-161 (211)
92 1lw7_A Transcriptional regulat 99.8 7.4E-23 2.5E-27 218.0 -5.4 148 417-569 157-329 (365)
93 1cr0_A DNA primase/helicase; R 99.8 6.6E-21 2.3E-25 197.0 9.4 181 416-617 23-237 (296)
94 4ad8_A DNA repair protein RECN 99.8 2.4E-20 8.4E-25 207.5 14.0 76 540-615 395-473 (517)
95 1tf7_A KAIC; homohexamer, hexa 99.8 7.2E-22 2.4E-26 220.2 -3.3 167 414-615 24-210 (525)
96 2o8b_B DNA mismatch repair pro 99.8 5.5E-20 1.9E-24 217.2 12.1 170 398-623 749-937 (1022)
97 2r6f_A Excinuclease ABC subuni 99.8 5.8E-20 2E-24 211.8 11.2 153 452-629 432-601 (972)
98 3qkt_A DNA double-strand break 99.8 6.5E-19 2.2E-23 185.5 16.7 74 540-613 247-327 (339)
99 2jeo_A Uridine-cytidine kinase 99.8 9.9E-21 3.4E-25 190.2 -0.0 169 414-627 11-186 (245)
100 1pzn_A RAD51, DNA repair and r 99.8 1.5E-20 5E-25 198.4 1.2 166 417-627 119-314 (349)
101 1tf7_A KAIC; homohexamer, hexa 99.8 1.7E-19 5.8E-24 201.0 9.4 169 400-616 258-444 (525)
102 1w1w_A Structural maintenance 99.8 7.3E-19 2.5E-23 191.2 13.4 73 541-613 333-410 (430)
103 1f2t_B RAD50 ABC-ATPase; DNA d 99.8 6.6E-19 2.3E-23 162.0 10.7 88 530-617 41-142 (148)
104 2ygr_A Uvrabc system protein A 99.8 1.4E-18 4.7E-23 201.1 15.5 139 486-634 465-623 (993)
105 1ewq_A DNA mismatch repair pro 99.8 1.7E-19 5.8E-24 207.0 7.7 147 397-606 548-704 (765)
106 3thx_A DNA mismatch repair pro 99.8 1.5E-18 5.1E-23 202.6 14.8 167 398-626 630-811 (934)
107 1odf_A YGR205W, hypothetical 3 99.8 3.4E-21 1.2E-25 197.7 -7.5 133 426-576 29-169 (290)
108 1rj9_A FTSY, signal recognitio 99.8 2.7E-19 9.1E-24 184.7 6.1 163 427-616 101-284 (304)
109 4a74_A DNA repair and recombin 99.8 5E-19 1.7E-23 175.3 7.2 147 424-615 21-200 (231)
110 1pui_A ENGB, probable GTP-bind 99.8 1.8E-20 6.1E-25 183.1 -3.2 169 400-589 4-198 (210)
111 3szr_A Interferon-induced GTP- 99.8 5.8E-21 2E-25 215.7 -8.3 190 399-627 10-236 (608)
112 3jvv_A Twitching mobility prot 99.7 6.6E-19 2.2E-23 185.6 4.1 147 403-615 92-246 (356)
113 2ehv_A Hypothetical protein PH 99.7 1.3E-19 4.4E-24 182.0 -1.6 180 400-613 7-206 (251)
114 3kta_B Chromosome segregation 99.7 1.1E-17 3.8E-22 157.8 11.4 79 539-617 62-146 (173)
115 2qag_C Septin-7; cell cycle, c 99.7 3.2E-19 1.1E-23 191.4 -0.1 166 398-603 10-180 (418)
116 3c8u_A Fructokinase; YP_612366 99.7 2.3E-20 7.9E-25 182.7 -12.6 118 425-569 19-140 (208)
117 2qnr_A Septin-2, protein NEDD5 99.7 5.4E-19 1.9E-23 182.7 -3.7 164 403-602 2-169 (301)
118 2w0m_A SSO2452; RECA, SSPF, un 99.7 8.9E-17 3E-21 159.1 10.6 164 415-615 9-192 (235)
119 1s96_A Guanylate kinase, GMP k 99.7 6.4E-18 2.2E-22 166.3 0.8 143 423-628 11-160 (219)
120 1zp6_A Hypothetical protein AT 99.7 1.9E-18 6.3E-23 166.3 -3.6 161 424-609 5-169 (191)
121 1nij_A Hypothetical protein YJ 99.6 1.3E-18 4.4E-23 181.4 -6.9 151 428-601 4-190 (318)
122 2qag_B Septin-6, protein NEDD5 99.6 2.2E-17 7.5E-22 176.3 2.1 180 399-599 16-218 (427)
123 3thx_B DNA mismatch repair pro 99.6 1.6E-16 5.5E-21 184.9 8.5 160 398-609 639-805 (918)
124 1nlf_A Regulatory protein REPA 99.6 5.8E-16 2E-20 158.4 11.1 151 424-603 26-184 (279)
125 2cvh_A DNA repair and recombin 99.6 4.6E-16 1.6E-20 152.7 9.5 151 416-615 7-185 (220)
126 1wb9_A DNA mismatch repair pro 99.6 2.7E-16 9.3E-21 181.5 4.9 165 398-619 576-749 (800)
127 1n0w_A DNA repair protein RAD5 99.6 3.1E-15 1.1E-19 149.2 8.2 146 424-615 20-209 (243)
128 2qm8_A GTPase/ATPase; G protei 99.6 2.8E-17 9.6E-22 172.5 -7.3 181 400-588 30-259 (337)
129 2yhs_A FTSY, cell division pro 99.6 2.9E-15 9.9E-20 161.9 7.4 155 419-598 284-447 (503)
130 3auy_A DNA double-strand break 99.5 6.2E-14 2.1E-18 149.3 11.7 74 540-613 279-359 (371)
131 2bdt_A BH3686; alpha-beta prot 99.5 3.2E-17 1.1E-21 157.6 -13.4 169 428-626 2-182 (189)
132 1p9r_A General secretion pathw 99.5 9.3E-17 3.2E-21 172.5 -11.4 131 417-564 158-314 (418)
133 2oap_1 GSPE-2, type II secreti 99.5 1.9E-16 6.5E-21 174.5 -10.0 177 415-607 247-458 (511)
134 1sxj_E Activator 1 40 kDa subu 99.5 9.5E-14 3.3E-18 146.6 9.8 138 430-602 38-176 (354)
135 3e70_C DPA, signal recognition 99.4 2.6E-14 8.9E-19 148.8 4.5 166 424-618 125-307 (328)
136 1htw_A HI0065; nucleotide-bind 99.4 3.4E-15 1.2E-19 138.9 -2.0 87 403-498 11-97 (158)
137 3lda_A DNA repair protein RAD5 99.4 1.2E-13 4.2E-18 147.3 9.7 147 424-616 174-364 (400)
138 2bbw_A Adenylate kinase 4, AK4 99.4 2.1E-15 7.1E-20 151.3 -3.9 171 427-614 26-218 (246)
139 2rcn_A Probable GTPase ENGC; Y 99.4 1.1E-13 3.8E-18 144.9 7.2 123 416-557 204-329 (358)
140 2kjq_A DNAA-related protein; s 99.4 4.6E-13 1.6E-17 123.4 7.5 91 417-599 30-124 (149)
141 3ec2_A DNA replication protein 99.3 1.5E-12 5.1E-17 123.8 7.8 111 422-601 32-144 (180)
142 3lnc_A Guanylate kinase, GMP k 99.3 2.4E-15 8.1E-20 149.4 -12.4 184 416-625 15-221 (231)
143 1sq5_A Pantothenate kinase; P- 99.3 2.5E-14 8.7E-19 148.3 -5.8 91 398-498 36-151 (308)
144 1cke_A CK, MSSA, protein (cyti 99.3 3.9E-14 1.3E-18 139.8 -4.6 129 427-570 4-151 (227)
145 2x8a_A Nuclear valosin-contain 99.3 8.5E-15 2.9E-19 149.2 -10.0 144 415-584 33-190 (274)
146 2yv5_A YJEQ protein; hydrolase 99.3 2.1E-13 7.3E-18 140.8 -0.2 118 424-554 161-300 (302)
147 1udx_A The GTP-binding protein 99.2 1.7E-12 5.9E-17 139.1 2.3 156 418-598 147-306 (416)
148 1u0l_A Probable GTPase ENGC; p 99.2 2.4E-12 8.2E-17 132.9 1.9 106 423-529 164-290 (301)
149 1ls1_A Signal recognition part 99.2 1.4E-11 4.9E-16 126.5 7.2 142 400-597 77-219 (295)
150 3tr0_A Guanylate kinase, GMP k 99.2 1.1E-11 3.9E-16 119.9 5.5 71 422-496 1-72 (205)
151 4e22_A Cytidylate kinase; P-lo 99.2 1.8E-12 6.2E-17 130.3 -0.5 104 426-539 25-146 (252)
152 1vma_A Cell division protein F 99.1 7.6E-11 2.6E-15 121.4 9.6 98 421-570 97-197 (306)
153 2px0_A Flagellar biosynthesis 99.1 6.7E-11 2.3E-15 121.5 8.0 138 426-619 103-246 (296)
154 3a00_A Guanylate kinase, GMP k 99.1 1.7E-11 5.9E-16 117.2 1.9 128 428-567 1-169 (186)
155 3euj_A Chromosome partition pr 99.1 2.3E-11 8E-16 132.0 3.1 65 401-471 8-72 (483)
156 3ney_A 55 kDa erythrocyte memb 99.1 2.1E-11 7.3E-16 117.0 1.9 83 422-516 13-108 (197)
157 1in4_A RUVB, holliday junction 99.0 8.2E-13 2.8E-17 138.5 -12.5 94 400-497 19-123 (334)
158 1iy2_A ATP-dependent metallopr 99.0 1.2E-12 4.1E-17 133.6 -11.3 141 401-570 51-196 (278)
159 2ius_A DNA translocase FTSK; n 99.0 3.9E-11 1.3E-15 131.1 -1.3 161 420-601 159-343 (512)
160 1t9h_A YLOQ, probable GTPase E 99.0 9E-11 3.1E-15 120.5 1.2 98 423-522 168-287 (307)
161 1ni3_A YCHF GTPase, YCHF GTP-b 98.9 1.7E-12 5.9E-17 137.7 -12.7 170 424-624 16-209 (392)
162 2dr3_A UPF0273 protein PH0284; 98.9 8.9E-09 3.1E-13 102.2 14.5 166 417-614 11-196 (247)
163 1kgd_A CASK, peripheral plasma 98.9 1.3E-10 4.3E-15 110.5 0.9 80 427-516 4-94 (180)
164 1oix_A RAS-related protein RAB 98.9 8.1E-11 2.8E-15 112.8 -1.1 143 430-586 31-188 (191)
165 1qhl_A Protein (cell division 98.9 3.2E-11 1.1E-15 118.6 -4.3 75 399-484 9-91 (227)
166 1ixz_A ATP-dependent metallopr 98.9 3.7E-12 1.3E-16 128.1 -12.4 142 400-570 26-172 (254)
167 3k1j_A LON protease, ATP-depen 98.8 1.2E-09 4.1E-14 123.5 5.0 157 415-586 47-227 (604)
168 2zr9_A Protein RECA, recombina 98.8 7.5E-09 2.6E-13 108.6 9.9 143 424-622 57-237 (349)
169 2r6a_A DNAB helicase, replicat 98.8 1.2E-08 4.2E-13 111.2 11.5 177 416-617 191-401 (454)
170 2qt1_A Nicotinamide riboside k 98.8 6.9E-10 2.4E-14 107.7 1.4 55 421-501 14-68 (207)
171 2dy1_A Elongation factor G; tr 98.8 1.7E-09 5.6E-14 123.4 3.8 75 422-497 3-79 (665)
172 1svm_A Large T antigen; AAA+ f 98.8 3.1E-11 1.1E-15 127.7 -9.8 141 415-570 156-312 (377)
173 3tau_A Guanylate kinase, GMP k 98.8 2.7E-09 9.2E-14 103.8 3.3 71 426-500 6-87 (208)
174 2f9l_A RAB11B, member RAS onco 98.7 5.1E-09 1.7E-13 100.7 4.1 139 430-587 7-165 (199)
175 2ce7_A Cell division protein F 98.7 3.3E-08 1.1E-12 107.6 10.2 123 416-612 39-183 (476)
176 3t34_A Dynamin-related protein 98.7 8E-09 2.7E-13 109.2 5.0 44 416-462 25-70 (360)
177 2j41_A Guanylate kinase; GMP, 98.7 3.5E-09 1.2E-13 102.3 0.8 35 423-457 1-35 (207)
178 3kta_A Chromosome segregation 98.6 5E-09 1.7E-13 99.3 0.6 99 419-521 18-136 (182)
179 3nwj_A ATSK2; P loop, shikimat 98.6 3.7E-09 1.3E-13 105.6 -0.9 52 399-452 17-72 (250)
180 3cr8_A Sulfate adenylyltranfer 98.6 3.9E-09 1.3E-13 117.0 -1.4 92 423-519 364-468 (552)
181 3uie_A Adenylyl-sulfate kinase 98.6 2.4E-08 8.2E-13 96.3 4.1 52 415-467 12-65 (200)
182 2qtf_A Protein HFLX, GTP-bindi 98.6 2.1E-08 7.1E-13 105.9 3.2 141 430-588 181-352 (364)
183 4eun_A Thermoresistant glucoki 98.6 1.4E-08 4.7E-13 98.0 1.7 59 422-486 23-82 (200)
184 3vaa_A Shikimate kinase, SK; s 98.5 3.1E-08 1.1E-12 95.4 2.8 45 408-452 5-49 (199)
185 1zu4_A FTSY; GTPase, signal re 98.5 3.6E-08 1.2E-12 102.2 2.9 68 418-485 95-172 (320)
186 2dhr_A FTSH; AAA+ protein, hex 98.5 5.4E-09 1.8E-13 114.5 -4.4 142 401-571 42-188 (499)
187 1jjv_A Dephospho-COA kinase; P 98.4 1.4E-07 4.8E-12 91.1 5.4 126 430-614 4-132 (206)
188 3tqc_A Pantothenate kinase; bi 98.4 1.3E-08 4.4E-13 105.1 -2.8 126 415-574 73-211 (321)
189 2xau_A PRE-mRNA-splicing facto 98.4 3.3E-07 1.1E-11 106.1 7.9 65 540-604 189-256 (773)
190 2e87_A Hypothetical protein PH 98.4 1.2E-06 4.1E-11 92.3 11.4 124 428-601 167-293 (357)
191 2ffh_A Protein (FFH); SRP54, s 98.3 1.2E-06 4.1E-11 93.8 9.8 165 400-598 77-246 (425)
192 3ice_A Transcription terminati 98.3 9.2E-08 3.1E-12 99.6 0.5 55 397-453 131-199 (422)
193 3hr8_A Protein RECA; alpha and 98.3 8.7E-07 3E-11 92.7 7.9 59 424-485 57-116 (356)
194 2z43_A DNA repair and recombin 98.3 6E-07 2E-11 93.3 6.7 29 424-452 103-131 (324)
195 2vp4_A Deoxynucleoside kinase; 98.3 2.1E-08 7.1E-13 99.1 -4.6 64 422-489 14-87 (230)
196 4a1f_A DNAB helicase, replicat 98.3 2.4E-06 8E-11 88.8 10.5 107 417-573 35-141 (338)
197 1rz3_A Hypothetical protein rb 98.1 6.8E-07 2.3E-11 86.1 2.3 49 424-472 18-66 (201)
198 1uf9_A TT1252 protein; P-loop, 98.1 2.2E-07 7.4E-12 89.3 -1.6 34 428-466 8-41 (203)
199 1knq_A Gluconate kinase; ALFA/ 98.1 7.9E-07 2.7E-11 83.3 2.2 39 426-468 6-44 (175)
200 2eyu_A Twitching motility prot 98.1 9.7E-07 3.3E-11 88.7 2.7 59 549-613 88-146 (261)
201 1fnn_A CDC6P, cell division co 98.1 1.7E-05 5.7E-10 84.0 12.2 45 558-603 124-172 (389)
202 3kl4_A SRP54, signal recogniti 98.1 5.3E-06 1.8E-10 88.9 7.8 40 427-466 96-135 (433)
203 3b9p_A CG5977-PA, isoform A; A 98.0 2.5E-05 8.4E-10 79.7 11.5 71 543-613 97-187 (297)
204 2pez_A Bifunctional 3'-phospho 97.9 1.4E-06 4.7E-11 82.1 -0.3 41 426-467 3-45 (179)
205 1v5w_A DMC1, meiotic recombina 97.9 3.9E-05 1.3E-09 80.2 10.5 28 424-451 118-145 (343)
206 1sxj_C Activator 1 40 kDa subu 97.8 2.8E-06 9.6E-11 88.7 0.8 44 415-458 31-76 (340)
207 1lv7_A FTSH; alpha/beta domain 97.8 7.9E-05 2.7E-09 74.2 11.1 44 418-465 37-80 (257)
208 1ega_A Protein (GTP-binding pr 97.8 1.5E-05 5.3E-10 81.7 5.6 145 427-603 7-162 (301)
209 3lxx_A GTPase IMAP family memb 97.8 0.00014 4.6E-09 71.7 12.0 29 430-458 31-59 (239)
210 1ypw_A Transitional endoplasmi 97.8 5.2E-06 1.8E-10 96.6 1.9 32 423-454 233-264 (806)
211 3bh0_A DNAB-like replicative h 97.8 4.7E-05 1.6E-09 78.6 8.9 36 416-451 56-91 (315)
212 2qby_A CDC6 homolog 1, cell di 97.8 1.2E-05 4E-10 84.8 4.2 31 426-456 43-73 (386)
213 3m6a_A ATP-dependent protease 97.7 5.3E-06 1.8E-10 92.2 0.8 79 402-484 86-164 (543)
214 1kag_A SKI, shikimate kinase I 97.7 1.5E-05 5E-10 74.3 3.4 33 427-463 3-35 (173)
215 2qor_A Guanylate kinase; phosp 97.7 7.1E-06 2.4E-10 79.0 1.1 69 424-495 8-87 (204)
216 2z4s_A Chromosomal replication 97.7 4.7E-05 1.6E-09 82.3 7.7 67 557-623 191-263 (440)
217 1m7g_A Adenylylsulfate kinase; 97.7 5.6E-06 1.9E-10 80.2 0.2 44 423-466 20-65 (211)
218 1mky_A Probable GTP-binding pr 97.7 1.6E-05 5.3E-10 86.2 3.6 201 429-642 181-419 (439)
219 3llm_A ATP-dependent RNA helic 97.7 3.7E-05 1.3E-09 75.7 5.9 132 425-591 73-209 (235)
220 4eaq_A DTMP kinase, thymidylat 97.7 1.4E-05 4.9E-10 78.5 2.8 45 418-463 13-60 (229)
221 1f6b_A SAR1; gtpases, N-termin 97.7 1E-05 3.5E-10 77.4 1.4 57 406-465 6-70 (198)
222 2p67_A LAO/AO transport system 97.6 7.4E-06 2.5E-10 85.6 -0.2 53 416-468 44-96 (341)
223 3r20_A Cytidylate kinase; stru 97.6 3.8E-06 1.3E-10 82.6 -2.3 71 427-497 8-96 (233)
224 3cf0_A Transitional endoplasmi 97.6 0.0001 3.4E-09 75.5 7.7 39 423-463 44-82 (301)
225 2www_A Methylmalonic aciduria 97.5 2.2E-05 7.7E-10 82.2 2.2 44 426-469 72-115 (349)
226 1u94_A RECA protein, recombina 97.5 0.00037 1.3E-08 72.9 10.9 46 417-463 50-99 (356)
227 3h4m_A Proteasome-activating n 97.5 0.00034 1.2E-08 70.6 10.2 28 425-452 48-75 (285)
228 1l8q_A Chromosomal replication 97.5 8.6E-05 2.9E-09 76.7 5.5 29 427-455 36-64 (324)
229 1m2o_B GTP-binding protein SAR 97.4 6.9E-05 2.4E-09 71.0 3.9 33 417-450 13-45 (190)
230 2w58_A DNAI, primosome compone 97.4 0.00015 5.3E-09 69.2 6.4 27 429-455 55-81 (202)
231 3lxw_A GTPase IMAP family memb 97.4 0.00019 6.4E-09 71.3 7.2 59 543-602 86-151 (247)
232 2jaq_A Deoxyguanosine kinase; 97.4 7.4E-06 2.5E-10 78.4 -3.2 67 430-499 2-87 (205)
233 4fcw_A Chaperone protein CLPB; 97.4 0.00055 1.9E-08 69.9 10.3 32 428-459 47-78 (311)
234 2gj8_A MNME, tRNA modification 97.4 9E-05 3.1E-09 69.0 3.7 27 426-452 2-28 (172)
235 3bos_A Putative DNA replicatio 97.4 8E-05 2.7E-09 72.8 3.4 28 427-454 51-78 (242)
236 2q6t_A DNAB replication FORK h 97.3 0.0007 2.4E-08 73.2 10.2 38 417-454 189-226 (444)
237 4dcu_A GTP-binding protein ENG 97.3 0.00018 6.3E-09 78.1 5.5 59 544-604 87-145 (456)
238 1j8m_F SRP54, signal recogniti 97.3 4.8E-05 1.6E-09 77.7 0.6 63 401-469 76-139 (297)
239 1y63_A LMAJ004144AAA protein; 97.3 0.00012 4.1E-09 69.1 3.3 32 420-451 2-33 (184)
240 1sxj_D Activator 1 41 kDa subu 97.2 7.2E-05 2.5E-09 77.9 1.2 43 559-602 133-175 (353)
241 3t61_A Gluconokinase; PSI-biol 97.2 0.00011 3.9E-09 70.2 2.3 35 428-466 18-52 (202)
242 2p5t_B PEZT; postsegregational 97.2 0.00011 3.8E-09 73.2 2.3 43 424-468 28-70 (253)
243 2yvu_A Probable adenylyl-sulfa 97.1 0.00011 3.8E-09 69.3 1.7 40 424-463 9-49 (186)
244 3n70_A Transport activator; si 97.1 0.0015 5.3E-08 58.8 9.2 30 426-455 22-51 (145)
245 1f2t_A RAD50 ABC-ATPase; DNA d 97.1 0.00026 8.8E-09 64.5 3.9 30 420-450 16-45 (149)
246 1njg_A DNA polymerase III subu 97.1 0.00017 5.7E-09 70.2 2.8 45 558-603 125-169 (250)
247 1np6_A Molybdopterin-guanine d 97.1 0.00019 6.4E-09 67.2 3.0 39 428-466 6-47 (174)
248 1ex7_A Guanylate kinase; subst 97.1 0.0002 6.7E-09 67.8 3.0 63 431-499 4-79 (186)
249 2qag_A Septin-2, protein NEDD5 97.1 5.4E-05 1.8E-09 79.6 -1.2 58 397-463 15-72 (361)
250 2i1q_A DNA repair and recombin 97.1 0.00097 3.3E-08 68.8 8.3 28 424-451 94-121 (322)
251 4a82_A Cystic fibrosis transme 97.1 0.12 4.2E-06 57.4 26.0 95 72-166 4-102 (578)
252 2ohf_A Protein OLA1, GTP-bindi 97.1 0.00025 8.7E-09 74.9 3.5 41 424-464 18-69 (396)
253 2qz4_A Paraplegin; AAA+, SPG7, 97.0 0.004 1.4E-07 61.6 11.5 27 426-452 37-63 (262)
254 2wji_A Ferrous iron transport 97.0 0.00056 1.9E-08 62.9 4.7 24 430-453 5-28 (165)
255 3d8b_A Fidgetin-like protein 1 97.0 0.0031 1E-07 66.0 10.9 27 426-452 115-141 (357)
256 2b8t_A Thymidine kinase; deoxy 96.9 0.001 3.5E-08 64.7 6.2 51 559-613 89-150 (223)
257 1lw7_A Transcriptional regulat 96.9 1.7E-05 5.9E-10 83.6 -7.1 86 541-628 258-355 (365)
258 3uk6_A RUVB-like 2; hexameric 96.9 0.0029 9.9E-08 66.2 10.1 40 426-465 68-107 (368)
259 2wjg_A FEOB, ferrous iron tran 96.9 0.00044 1.5E-08 64.7 3.3 23 429-451 8-30 (188)
260 2v1u_A Cell division control p 96.9 0.0017 5.7E-08 68.2 8.1 29 426-454 42-70 (387)
261 2zej_A Dardarin, leucine-rich 96.8 0.00053 1.8E-08 64.3 3.3 26 430-455 4-29 (184)
262 2if2_A Dephospho-COA kinase; a 96.8 0.00058 2E-08 65.2 3.5 21 430-450 3-23 (204)
263 1qhx_A CPT, protein (chloramph 96.8 0.00061 2.1E-08 63.4 3.6 27 427-453 2-28 (178)
264 3dm5_A SRP54, signal recogniti 96.8 0.0074 2.5E-07 64.6 12.4 35 427-461 99-133 (443)
265 3bgw_A DNAB-like replicative h 96.8 0.0044 1.5E-07 66.8 10.2 35 418-452 187-221 (444)
266 3qf4_A ABC transporter, ATP-bi 96.8 1 3.5E-05 50.1 34.4 88 75-165 16-103 (587)
267 1xwi_A SKD1 protein; VPS4B, AA 96.7 0.0084 2.9E-07 61.7 11.9 28 425-452 42-69 (322)
268 4ag6_A VIRB4 ATPase, type IV s 96.7 0.00074 2.5E-08 71.7 3.5 58 558-615 261-335 (392)
269 3syl_A Protein CBBX; photosynt 96.7 0.012 4.1E-07 59.7 12.5 27 427-453 66-92 (309)
270 2ga8_A Hypothetical 39.9 kDa p 96.7 0.00025 8.4E-09 73.6 -0.3 38 416-453 10-49 (359)
271 3t15_A Ribulose bisphosphate c 96.7 0.0017 5.8E-08 66.0 6.0 27 426-452 34-60 (293)
272 3ihw_A Centg3; RAS, centaurin, 96.7 0.0014 4.7E-08 61.5 4.8 36 430-465 22-66 (184)
273 4b4t_L 26S protease subunit RP 96.7 0.0066 2.3E-07 64.9 10.6 30 424-453 211-240 (437)
274 3cm0_A Adenylate kinase; ATP-b 96.6 0.00079 2.7E-08 63.1 2.8 27 426-452 2-28 (186)
275 1gtv_A TMK, thymidylate kinase 96.6 0.0003 1E-08 67.6 -0.2 26 430-455 2-27 (214)
276 3kb2_A SPBC2 prophage-derived 96.6 0.00079 2.7E-08 62.1 2.6 25 429-453 2-26 (173)
277 1gvn_B Zeta; postsegregational 96.6 0.0011 3.9E-08 67.1 3.8 35 427-463 32-66 (287)
278 1ko7_A HPR kinase/phosphatase; 96.5 0.0011 3.9E-08 67.5 3.6 34 416-450 133-166 (314)
279 3qks_A DNA double-strand break 96.5 0.0014 4.9E-08 62.8 3.9 29 420-449 16-44 (203)
280 1kht_A Adenylate kinase; phosp 96.5 0.0014 4.7E-08 61.6 3.6 27 427-453 2-28 (192)
281 2dby_A GTP-binding protein; GD 96.5 0.00087 3E-08 70.4 2.3 59 430-522 3-61 (368)
282 1xjc_A MOBB protein homolog; s 96.5 0.00091 3.1E-08 62.1 2.2 35 429-463 5-42 (169)
283 3trf_A Shikimate kinase, SK; a 96.5 0.0014 4.9E-08 61.3 3.5 26 427-452 4-29 (185)
284 2chg_A Replication factor C sm 96.5 0.01 3.6E-07 56.3 9.8 43 558-601 101-143 (226)
285 2v54_A DTMP kinase, thymidylat 96.5 0.0016 5.5E-08 61.9 3.8 27 426-452 2-28 (204)
286 2orw_A Thymidine kinase; TMTK, 96.4 0.0041 1.4E-07 58.5 6.5 52 559-614 76-138 (184)
287 1ypw_A Transitional endoplasmi 96.4 0.00051 1.8E-08 79.8 0.2 34 420-453 503-536 (806)
288 1xp8_A RECA protein, recombina 96.4 0.0063 2.2E-07 63.7 8.5 29 424-452 70-98 (366)
289 2ewv_A Twitching motility prot 96.4 0.0011 3.7E-08 69.9 2.7 58 549-612 199-256 (372)
290 1vht_A Dephospho-COA kinase; s 96.4 0.0016 5.6E-08 62.8 3.8 32 427-463 3-34 (218)
291 2vhj_A Ntpase P4, P4; non- hyd 96.4 0.0056 1.9E-07 62.5 7.7 29 423-451 118-146 (331)
292 3b5x_A Lipid A export ATP-bind 96.4 1.6 5.5E-05 48.4 38.4 91 73-166 16-106 (582)
293 2zan_A Vacuolar protein sortin 96.4 0.015 5E-07 62.7 11.4 27 426-452 165-191 (444)
294 2rhm_A Putative kinase; P-loop 96.4 0.0013 4.5E-08 61.8 2.8 27 426-452 3-29 (193)
295 1q3t_A Cytidylate kinase; nucl 96.4 0.0016 5.6E-08 63.8 3.5 28 425-452 13-40 (236)
296 3zvl_A Bifunctional polynucleo 96.4 0.014 4.9E-07 62.2 11.2 37 423-463 253-289 (416)
297 2qp9_X Vacuolar protein sortin 96.4 0.011 3.8E-07 61.7 10.0 27 426-452 82-108 (355)
298 1fzq_A ADP-ribosylation factor 96.4 0.0014 4.6E-08 61.3 2.7 30 428-457 16-49 (181)
299 1jal_A YCHF protein; nucleotid 96.4 0.0025 8.6E-08 66.5 4.9 36 428-463 2-48 (363)
300 3lw7_A Adenylate kinase relate 96.3 0.0018 6E-08 59.6 3.2 20 429-448 2-21 (179)
301 3iij_A Coilin-interacting nucl 96.3 0.0012 4.2E-08 61.5 2.1 27 426-452 9-35 (180)
302 2r62_A Cell division protease 96.3 0.0017 5.8E-08 64.8 3.1 33 418-452 36-68 (268)
303 1jwy_B Dynamin A GTPase domain 96.2 0.017 5.9E-07 58.8 10.5 24 430-453 26-49 (315)
304 2plr_A DTMP kinase, probable t 96.2 0.0025 8.4E-08 60.9 3.7 28 427-454 3-30 (213)
305 2wwf_A Thymidilate kinase, put 96.2 0.0023 7.7E-08 61.3 3.4 27 426-452 8-34 (212)
306 3qf4_B Uncharacterized ABC tra 96.2 2.1 7.2E-05 47.6 31.1 99 64-166 20-118 (598)
307 4b4t_M 26S protease regulatory 96.2 0.014 4.6E-07 62.4 9.7 31 423-453 210-240 (434)
308 4b4t_K 26S protease regulatory 96.2 0.015 5.1E-07 62.1 9.8 30 424-453 202-231 (428)
309 3cmw_A Protein RECA, recombina 96.2 0.017 5.9E-07 71.2 11.6 39 425-463 729-768 (1706)
310 2c95_A Adenylate kinase 1; tra 96.2 0.0023 7.7E-08 60.4 3.2 27 426-452 7-33 (196)
311 1nn5_A Similar to deoxythymidy 96.2 0.0025 8.7E-08 61.0 3.4 28 425-452 6-33 (215)
312 3pfi_A Holliday junction ATP-d 96.1 0.032 1.1E-06 57.4 12.0 25 429-453 56-80 (338)
313 4b4t_J 26S protease regulatory 96.1 0.016 5.3E-07 61.2 9.4 30 425-454 179-208 (405)
314 1via_A Shikimate kinase; struc 96.1 0.0024 8.3E-08 59.3 2.9 23 430-452 6-28 (175)
315 2vli_A Antibiotic resistance p 96.1 0.0023 7.8E-08 59.7 2.5 28 426-453 3-30 (183)
316 3co5_A Putative two-component 96.1 0.0095 3.2E-07 53.4 6.5 28 426-453 25-52 (143)
317 4b4t_I 26S protease regulatory 96.0 0.024 8.1E-07 60.1 10.4 30 424-453 212-241 (437)
318 2ze6_A Isopentenyl transferase 96.0 0.0026 9E-08 63.1 3.0 23 430-452 3-25 (253)
319 3b60_A Lipid A export ATP-bind 96.0 2.5 8.5E-05 46.8 36.9 85 79-166 22-106 (582)
320 1ly1_A Polynucleotide kinase; 96.0 0.0034 1.2E-07 58.2 3.3 31 429-462 3-33 (181)
321 2bwj_A Adenylate kinase 5; pho 96.0 0.0026 8.8E-08 60.1 2.5 28 425-452 9-36 (199)
322 2qby_B CDC6 homolog 3, cell di 96.0 0.0023 8E-08 67.2 2.3 26 427-452 44-69 (384)
323 3io5_A Recombination and repai 96.0 0.0087 3E-07 60.9 6.3 23 425-448 26-48 (333)
324 1jr3_A DNA polymerase III subu 95.9 0.015 5.2E-07 60.5 8.5 42 559-601 119-160 (373)
325 2erx_A GTP-binding protein DI- 95.9 0.0064 2.2E-07 55.3 4.9 21 430-450 5-25 (172)
326 2lkc_A Translation initiation 95.9 0.0067 2.3E-07 55.8 5.1 26 426-451 6-31 (178)
327 3pvs_A Replication-associated 95.9 0.0077 2.6E-07 65.0 6.1 36 419-454 39-76 (447)
328 1tev_A UMP-CMP kinase; ploop, 95.9 0.0038 1.3E-07 58.6 3.2 26 427-452 2-27 (196)
329 1hqc_A RUVB; extended AAA-ATPa 95.9 0.02 7E-07 58.4 9.0 26 427-452 37-62 (324)
330 1nks_A Adenylate kinase; therm 95.9 0.0038 1.3E-07 58.5 3.0 24 430-453 3-26 (194)
331 2yl4_A ATP-binding cassette SU 95.8 3.1 0.0001 46.2 37.7 146 127-277 72-221 (595)
332 1aky_A Adenylate kinase; ATP:A 95.8 0.0049 1.7E-07 59.5 3.7 27 426-452 2-28 (220)
333 3cbq_A GTP-binding protein REM 95.8 0.0037 1.3E-07 59.1 2.7 22 430-451 25-46 (195)
334 3pxi_A Negative regulator of g 95.8 0.021 7.2E-07 65.9 9.5 23 430-452 523-545 (758)
335 1zd8_A GTP:AMP phosphotransfer 95.8 0.0042 1.4E-07 60.3 3.1 27 426-452 5-31 (227)
336 2cdn_A Adenylate kinase; phosp 95.8 0.0055 1.9E-07 58.2 3.7 26 427-452 19-44 (201)
337 3hu3_A Transitional endoplasmi 95.8 0.024 8.1E-07 61.8 9.2 28 425-452 235-262 (489)
338 4b4t_H 26S protease regulatory 95.7 0.029 9.8E-07 60.1 9.5 31 423-453 238-268 (467)
339 1a7j_A Phosphoribulokinase; tr 95.7 0.0028 9.6E-08 64.3 1.6 26 427-452 4-29 (290)
340 1z0j_A RAB-22, RAS-related pro 95.7 0.0072 2.5E-07 54.9 4.3 23 430-452 8-30 (170)
341 2z0h_A DTMP kinase, thymidylat 95.7 0.0051 1.8E-07 57.9 3.3 24 430-453 2-25 (197)
342 1c1y_A RAS-related protein RAP 95.7 0.0082 2.8E-07 54.3 4.6 22 430-451 5-26 (167)
343 2iyv_A Shikimate kinase, SK; t 95.7 0.0047 1.6E-07 57.7 3.0 25 428-452 2-26 (184)
344 3ake_A Cytidylate kinase; CMP 95.7 0.005 1.7E-07 58.5 3.2 23 430-452 4-26 (208)
345 1z2a_A RAS-related protein RAB 95.7 0.0053 1.8E-07 55.7 3.2 22 430-451 7-28 (168)
346 1ukz_A Uridylate kinase; trans 95.7 0.0047 1.6E-07 58.7 2.8 26 427-452 14-39 (203)
347 3fb4_A Adenylate kinase; psych 95.7 0.0054 1.9E-07 58.9 3.3 23 430-452 2-24 (216)
348 1e6c_A Shikimate kinase; phosp 95.7 0.0055 1.9E-07 56.4 3.2 24 429-452 3-26 (173)
349 1zuh_A Shikimate kinase; alpha 95.7 0.006 2.1E-07 56.0 3.5 25 428-452 7-31 (168)
350 2fn4_A P23, RAS-related protei 95.6 0.0084 2.9E-07 55.1 4.4 22 430-451 11-32 (181)
351 1zak_A Adenylate kinase; ATP:A 95.6 0.005 1.7E-07 59.5 2.9 27 427-453 4-30 (222)
352 3dl0_A Adenylate kinase; phosp 95.6 0.0052 1.8E-07 59.0 3.0 23 430-452 2-24 (216)
353 3u61_B DNA polymerase accessor 95.6 0.019 6.5E-07 58.8 7.4 43 559-602 105-148 (324)
354 2grj_A Dephospho-COA kinase; T 95.6 0.006 2.1E-07 57.8 3.3 25 428-452 12-36 (192)
355 2ew1_A RAS-related protein RAB 95.6 0.0093 3.2E-07 56.7 4.6 22 430-451 28-49 (201)
356 2pt5_A Shikimate kinase, SK; a 95.6 0.0065 2.2E-07 55.7 3.4 23 430-452 2-24 (168)
357 3q72_A GTP-binding protein RAD 95.6 0.0053 1.8E-07 55.7 2.7 23 430-452 4-26 (166)
358 1kao_A RAP2A; GTP-binding prot 95.6 0.0064 2.2E-07 55.0 3.2 22 430-451 5-26 (167)
359 3vfd_A Spastin; ATPase, microt 95.6 0.042 1.4E-06 57.9 10.1 27 426-452 146-172 (389)
360 2nzj_A GTP-binding protein REM 95.6 0.0067 2.3E-07 55.5 3.4 23 430-452 6-28 (175)
361 2ged_A SR-beta, signal recogni 95.5 0.0063 2.1E-07 57.0 3.2 27 427-453 47-73 (193)
362 2oil_A CATX-8, RAS-related pro 95.5 0.0089 3E-07 56.0 4.3 22 430-451 27-48 (193)
363 3cmu_A Protein RECA, recombina 95.5 0.026 9E-07 70.5 9.4 39 415-453 1066-1106(2050)
364 1r2q_A RAS-related protein RAB 95.5 0.0094 3.2E-07 54.1 4.2 22 430-451 8-29 (170)
365 3q85_A GTP-binding protein REM 95.5 0.0069 2.4E-07 55.1 3.3 23 430-452 4-26 (169)
366 2r8r_A Sensor protein; KDPD, P 95.5 0.0092 3.2E-07 57.8 4.3 26 427-452 4-30 (228)
367 2dyk_A GTP-binding protein; GT 95.5 0.0068 2.3E-07 54.6 3.2 23 430-452 3-25 (161)
368 3clv_A RAB5 protein, putative; 95.5 0.0087 3E-07 56.1 4.0 22 430-451 9-30 (208)
369 1u8z_A RAS-related protein RAL 95.5 0.0067 2.3E-07 54.8 3.2 22 430-451 6-27 (168)
370 3eie_A Vacuolar protein sortin 95.5 0.013 4.6E-07 60.1 5.7 27 426-452 49-75 (322)
371 1uj2_A Uridine-cytidine kinase 95.5 0.0061 2.1E-07 60.3 3.0 24 429-452 23-46 (252)
372 2ce2_X GTPase HRAS; signaling 95.5 0.0062 2.1E-07 54.9 2.9 23 430-452 5-27 (166)
373 3tlx_A Adenylate kinase 2; str 95.5 0.0067 2.3E-07 59.7 3.3 26 427-452 28-53 (243)
374 2pbr_A DTMP kinase, thymidylat 95.5 0.007 2.4E-07 56.7 3.3 23 430-452 2-24 (195)
375 1ksh_A ARF-like protein 2; sma 95.5 0.012 4.2E-07 54.5 5.0 26 426-451 16-41 (186)
376 1z08_A RAS-related protein RAB 95.5 0.0072 2.5E-07 55.0 3.2 22 430-451 8-29 (170)
377 3t5d_A Septin-7; GTP-binding p 95.4 0.0059 2E-07 61.3 2.8 23 430-452 10-32 (274)
378 3a8t_A Adenylate isopentenyltr 95.4 0.0077 2.6E-07 62.0 3.7 27 427-453 39-65 (339)
379 3k53_A Ferrous iron transport 95.4 0.0064 2.2E-07 60.9 3.0 24 430-453 5-28 (271)
380 3iby_A Ferrous iron transport 95.4 0.0065 2.2E-07 60.4 3.0 23 430-452 3-25 (256)
381 3a4m_A L-seryl-tRNA(SEC) kinas 95.4 0.0072 2.5E-07 60.1 3.3 27 426-452 2-28 (260)
382 1ek0_A Protein (GTP-binding pr 95.4 0.0074 2.5E-07 54.8 3.2 23 430-452 5-27 (170)
383 1g16_A RAS-related protein SEC 95.4 0.0067 2.3E-07 55.1 2.9 23 430-452 5-27 (170)
384 1m7b_A RND3/RHOE small GTP-bin 95.4 0.011 3.7E-07 55.0 4.3 22 430-451 9-30 (184)
385 1qf9_A UMP/CMP kinase, protein 95.4 0.007 2.4E-07 56.6 3.0 25 428-452 6-30 (194)
386 1wms_A RAB-9, RAB9, RAS-relate 95.4 0.0076 2.6E-07 55.3 3.2 22 430-451 9-30 (177)
387 1ky3_A GTP-binding protein YPT 95.4 0.0076 2.6E-07 55.4 3.2 23 430-452 10-32 (182)
388 2qmh_A HPR kinase/phosphorylas 95.4 0.011 3.6E-07 56.1 4.1 36 416-452 23-58 (205)
389 3tw8_B RAS-related protein RAB 95.3 0.0077 2.6E-07 55.4 3.0 22 430-451 11-32 (181)
390 1svi_A GTP-binding protein YSX 95.3 0.0073 2.5E-07 56.5 2.8 25 427-451 22-46 (195)
391 2bcg_Y Protein YP2, GTP-bindin 95.3 0.013 4.5E-07 55.5 4.6 22 430-451 10-31 (206)
392 1sxj_B Activator 1 37 kDa subu 95.3 0.024 8.3E-07 57.6 6.9 42 559-601 107-148 (323)
393 3t1o_A Gliding protein MGLA; G 95.2 0.0093 3.2E-07 55.7 3.3 25 430-454 16-40 (198)
394 3pqc_A Probable GTP-binding pr 95.2 0.0079 2.7E-07 56.1 2.8 24 429-452 24-47 (195)
395 4dsu_A GTPase KRAS, isoform 2B 95.2 0.0092 3.1E-07 55.3 3.2 23 430-452 6-28 (189)
396 2f6r_A COA synthase, bifunctio 95.2 0.0078 2.7E-07 60.7 2.9 23 428-450 75-97 (281)
397 1r8s_A ADP-ribosylation factor 95.2 0.0097 3.3E-07 53.8 3.2 21 430-450 2-22 (164)
398 3t5g_A GTP-binding protein RHE 95.2 0.015 5.1E-07 53.6 4.5 21 430-450 8-28 (181)
399 1ojl_A Transcriptional regulat 95.2 0.061 2.1E-06 54.7 9.4 29 426-454 23-51 (304)
400 3bc1_A RAS-related protein RAB 95.2 0.0096 3.3E-07 55.4 3.2 22 430-451 13-34 (195)
401 2hxs_A RAB-26, RAS-related pro 95.2 0.011 3.7E-07 54.3 3.4 22 430-451 8-29 (178)
402 3b1v_A Ferrous iron uptake tra 95.2 0.0098 3.4E-07 59.6 3.4 23 430-452 5-27 (272)
403 1upt_A ARL1, ADP-ribosylation 95.1 0.01 3.5E-07 54.0 3.2 23 428-450 7-29 (171)
404 2cxx_A Probable GTP-binding pr 95.1 0.0091 3.1E-07 55.5 2.8 23 430-452 3-25 (190)
405 2g6b_A RAS-related protein RAB 95.1 0.01 3.5E-07 54.5 3.2 23 430-452 12-34 (180)
406 3tqf_A HPR(Ser) kinase; transf 95.1 0.018 6.1E-07 53.2 4.6 34 416-450 5-38 (181)
407 2y8e_A RAB-protein 6, GH09086P 95.1 0.0095 3.2E-07 54.6 2.9 22 430-451 16-37 (179)
408 2fg5_A RAB-22B, RAS-related pr 95.1 0.014 4.6E-07 54.8 4.0 22 430-451 25-46 (192)
409 3be4_A Adenylate kinase; malar 95.1 0.01 3.5E-07 57.2 3.1 26 427-452 4-29 (217)
410 2gf0_A GTP-binding protein DI- 95.1 0.016 5.5E-07 54.3 4.5 21 430-450 10-30 (199)
411 1wf3_A GTP-binding protein; GT 95.1 0.01 3.6E-07 60.4 3.3 22 430-451 9-30 (301)
412 3d3q_A TRNA delta(2)-isopenten 95.1 0.01 3.4E-07 61.3 3.1 25 429-453 8-32 (340)
413 4bas_A ADP-ribosylation factor 95.1 0.014 4.8E-07 54.7 3.9 24 427-450 16-39 (199)
414 3exa_A TRNA delta(2)-isopenten 95.1 0.012 4.1E-07 59.9 3.6 26 428-453 3-28 (322)
415 1sky_E F1-ATPase, F1-ATP synth 95.0 0.0056 1.9E-07 65.8 1.2 43 417-460 141-183 (473)
416 1z0f_A RAB14, member RAS oncog 95.0 0.011 3.8E-07 54.1 3.2 23 430-452 17-39 (179)
417 3con_A GTPase NRAS; structural 95.0 0.011 3.8E-07 55.1 3.2 22 430-451 23-44 (190)
418 2efe_B Small GTP-binding prote 95.0 0.011 3.9E-07 54.3 3.2 23 430-452 14-36 (181)
419 2orv_A Thymidine kinase; TP4A 95.0 0.076 2.6E-06 51.4 9.0 51 558-613 89-150 (234)
420 1gwn_A RHO-related GTP-binding 95.0 0.016 5.6E-07 55.1 4.3 22 430-451 30-51 (205)
421 2a9k_A RAS-related protein RAL 95.0 0.012 4E-07 54.4 3.2 22 430-451 20-41 (187)
422 2h92_A Cytidylate kinase; ross 95.0 0.011 3.7E-07 56.9 2.9 25 428-452 3-27 (219)
423 3v9p_A DTMP kinase, thymidylat 95.0 0.011 3.7E-07 57.6 2.9 28 426-453 23-50 (227)
424 3reg_A RHO-like small GTPase; 95.0 0.019 6.6E-07 53.7 4.6 23 430-452 25-47 (194)
425 3tmk_A Thymidylate kinase; pho 95.0 0.013 4.6E-07 56.5 3.5 29 426-454 3-31 (216)
426 1sxj_A Activator 1 95 kDa subu 94.9 0.083 2.8E-06 58.0 10.3 26 427-452 76-101 (516)
427 3euj_A Chromosome partition pr 94.9 0.041 1.4E-06 59.5 7.6 77 533-613 371-464 (483)
428 2atv_A RERG, RAS-like estrogen 94.9 0.021 7.1E-07 53.6 4.7 24 428-451 28-51 (196)
429 3iev_A GTP-binding protein ERA 94.9 0.013 4.3E-07 60.0 3.3 26 427-452 9-34 (308)
430 2gf9_A RAS-related protein RAB 94.9 0.013 4.4E-07 54.7 3.2 23 430-452 24-46 (189)
431 2bme_A RAB4A, RAS-related prot 94.9 0.012 4.1E-07 54.5 2.9 23 430-452 12-34 (186)
432 2xtp_A GTPase IMAP family memb 94.9 0.012 4.1E-07 58.2 3.1 24 429-452 23-46 (260)
433 1vg8_A RAS-related protein RAB 94.9 0.013 4.6E-07 55.3 3.2 23 430-452 10-32 (207)
434 3auy_A DNA double-strand break 94.9 0.014 4.7E-07 61.4 3.6 30 419-449 17-46 (371)
435 2bov_A RAla, RAS-related prote 94.9 0.013 4.5E-07 55.2 3.2 22 430-451 16-37 (206)
436 1z06_A RAS-related protein RAB 94.8 0.014 4.8E-07 54.4 3.2 22 430-451 22-43 (189)
437 3kkq_A RAS-related protein M-R 94.8 0.018 6.2E-07 53.2 3.9 22 430-451 20-41 (183)
438 1moz_A ARL1, ADP-ribosylation 94.8 0.0091 3.1E-07 55.2 1.7 24 427-450 17-40 (183)
439 1zbd_A Rabphilin-3A; G protein 94.8 0.015 5.2E-07 54.8 3.3 23 430-452 10-32 (203)
440 2cjw_A GTP-binding protein GEM 94.8 0.015 5E-07 54.8 3.2 22 430-451 8-29 (192)
441 1e4v_A Adenylate kinase; trans 94.7 0.014 4.7E-07 56.1 3.0 23 430-452 2-24 (214)
442 3e1s_A Exodeoxyribonuclease V, 94.7 0.041 1.4E-06 61.2 7.2 29 427-455 203-231 (574)
443 4dhe_A Probable GTP-binding pr 94.7 0.008 2.7E-07 57.7 1.3 25 428-452 29-53 (223)
444 2il1_A RAB12; G-protein, GDP, 94.7 0.014 4.9E-07 54.7 3.0 22 430-451 28-49 (192)
445 1nrj_B SR-beta, signal recogni 94.7 0.015 5.1E-07 55.6 3.2 24 429-452 13-36 (218)
446 1mh1_A RAC1; GTP-binding, GTPa 94.7 0.015 5.2E-07 53.6 3.2 22 430-451 7-28 (186)
447 2qu8_A Putative nucleolar GTP- 94.7 0.015 5E-07 56.3 3.2 23 429-451 30-52 (228)
448 3tkl_A RAS-related protein RAB 94.7 0.019 6.5E-07 53.6 3.9 23 430-452 18-40 (196)
449 3oes_A GTPase rhebl1; small GT 94.7 0.014 4.7E-07 55.2 2.9 25 428-452 24-48 (201)
450 2fv8_A H6, RHO-related GTP-bin 94.7 0.0069 2.4E-07 57.6 0.7 35 418-452 15-49 (207)
451 2xb4_A Adenylate kinase; ATP-b 94.7 0.016 5.5E-07 56.1 3.3 23 430-452 2-24 (223)
452 1ak2_A Adenylate kinase isoenz 94.7 0.018 6.1E-07 56.1 3.7 26 427-452 15-40 (233)
453 4edh_A DTMP kinase, thymidylat 94.7 0.016 5.5E-07 55.8 3.3 29 426-454 4-32 (213)
454 1jbk_A CLPB protein; beta barr 94.7 0.018 6.1E-07 53.3 3.5 28 426-453 41-68 (195)
455 3llu_A RAS-related GTP-binding 94.7 0.016 5.4E-07 54.5 3.2 26 429-454 21-46 (196)
456 2a5j_A RAS-related protein RAB 94.7 0.016 5.5E-07 54.1 3.2 22 430-451 23-44 (191)
457 3dz8_A RAS-related protein RAB 94.7 0.015 5E-07 54.5 2.9 23 430-452 25-47 (191)
458 3crm_A TRNA delta(2)-isopenten 94.6 0.016 5.3E-07 59.4 3.2 25 429-453 6-30 (323)
459 3cmu_A Protein RECA, recombina 94.6 0.099 3.4E-06 65.5 10.8 39 425-463 380-419 (2050)
460 3i8s_A Ferrous iron transport 94.6 0.015 5.3E-07 58.2 3.1 23 430-452 5-27 (274)
461 3lv8_A DTMP kinase, thymidylat 94.6 0.017 6E-07 56.5 3.4 28 427-454 26-53 (236)
462 3cnl_A YLQF, putative uncharac 94.6 0.017 5.8E-07 57.5 3.3 30 429-458 100-129 (262)
463 2o52_A RAS-related protein RAB 94.6 0.016 5.5E-07 54.7 3.0 22 430-451 27-48 (200)
464 3bwd_D RAC-like GTP-binding pr 94.6 0.02 6.8E-07 52.7 3.5 25 427-451 7-31 (182)
465 3cf2_A TER ATPase, transitiona 94.6 0.053 1.8E-06 62.3 7.7 30 424-453 234-263 (806)
466 3ld9_A DTMP kinase, thymidylat 94.6 0.018 6.2E-07 55.8 3.3 28 426-453 19-46 (223)
467 1zd9_A ADP-ribosylation factor 94.6 0.018 6E-07 53.8 3.2 22 430-451 24-45 (188)
468 1zj6_A ADP-ribosylation factor 94.5 0.017 5.8E-07 53.7 3.0 24 427-450 15-38 (187)
469 2p5s_A RAS and EF-hand domain 94.5 0.018 6.1E-07 54.3 3.2 26 427-452 27-52 (199)
470 3cph_A RAS-related protein SEC 94.5 0.018 6.1E-07 54.7 3.2 24 428-451 20-43 (213)
471 3a1s_A Iron(II) transport prot 94.5 0.018 6.3E-07 57.1 3.4 23 430-452 7-29 (258)
472 3foz_A TRNA delta(2)-isopenten 94.5 0.018 6E-07 58.5 3.2 26 428-453 10-35 (316)
473 2ocp_A DGK, deoxyguanosine kin 94.5 0.016 5.5E-07 56.7 2.9 27 427-453 1-27 (241)
474 3def_A T7I23.11 protein; chlor 94.5 0.017 5.8E-07 57.4 3.1 23 430-452 38-60 (262)
475 1x3s_A RAS-related protein RAB 94.5 0.019 6.4E-07 53.6 3.2 23 429-451 16-38 (195)
476 2h17_A ADP-ribosylation factor 94.5 0.015 5.3E-07 53.8 2.6 23 429-451 22-44 (181)
477 4tmk_A Protein (thymidylate ki 94.5 0.02 6.9E-07 55.1 3.4 28 427-454 2-29 (213)
478 2h57_A ADP-ribosylation factor 94.5 0.014 4.8E-07 54.5 2.3 24 429-452 22-45 (190)
479 1h65_A Chloroplast outer envel 94.5 0.017 5.9E-07 57.6 3.0 23 430-452 41-63 (270)
480 1p5z_B DCK, deoxycytidine kina 94.5 0.012 4.3E-07 58.4 2.0 29 425-453 21-49 (263)
481 2wsm_A Hydrogenase expression/ 94.5 0.017 5.9E-07 55.3 2.9 24 429-452 31-54 (221)
482 3c5c_A RAS-like protein 12; GD 94.4 0.02 6.8E-07 53.5 3.2 22 430-451 23-44 (187)
483 2f7s_A C25KG, RAS-related prot 94.4 0.021 7.2E-07 54.5 3.4 23 430-452 27-49 (217)
484 1qvr_A CLPB protein; coiled co 94.4 0.036 1.2E-06 64.9 6.0 35 429-463 589-624 (854)
485 2j1l_A RHO-related GTP-binding 94.4 0.019 6.6E-07 54.9 3.1 21 430-450 36-56 (214)
486 2iwr_A Centaurin gamma 1; ANK 94.4 0.016 5.4E-07 53.3 2.3 22 430-451 9-30 (178)
487 2q3h_A RAS homolog gene family 94.4 0.022 7.4E-07 53.6 3.3 25 427-451 19-43 (201)
488 2fu5_C RAS-related protein RAB 94.3 0.014 4.9E-07 53.8 1.9 22 430-451 10-31 (183)
489 1ltq_A Polynucleotide kinase; 94.3 0.021 7.3E-07 57.7 3.3 32 429-463 3-34 (301)
490 2fh5_B SR-beta, signal recogni 94.3 0.028 9.5E-07 53.5 4.0 25 428-452 7-31 (214)
491 4gzl_A RAS-related C3 botulinu 94.3 0.03 1E-06 53.0 4.2 24 427-450 29-52 (204)
492 2gco_A H9, RHO-related GTP-bin 94.3 0.02 6.8E-07 54.1 2.9 23 430-452 27-49 (201)
493 2aka_B Dynamin-1; fusion prote 94.3 0.019 6.4E-07 58.0 2.8 23 430-452 28-50 (299)
494 3q3j_B RHO-related GTP-binding 94.2 0.036 1.2E-06 53.0 4.6 24 428-451 27-50 (214)
495 3r7w_A Gtpase1, GTP-binding pr 94.2 0.022 7.6E-07 58.1 3.2 26 427-452 2-27 (307)
496 3cmw_A Protein RECA, recombina 94.2 0.15 5.3E-06 62.9 11.0 29 425-453 380-408 (1706)
497 2g3y_A GTP-binding protein GEM 94.2 0.025 8.7E-07 54.3 3.4 23 430-452 39-61 (211)
498 2b6h_A ADP-ribosylation factor 94.2 0.021 7.1E-07 53.6 2.7 25 426-450 27-51 (192)
499 1a5t_A Delta prime, HOLB; zinc 94.1 0.2 6.7E-06 51.6 10.4 26 430-455 26-51 (334)
500 2atx_A Small GTP binding prote 94.1 0.024 8.2E-07 53.0 2.9 22 430-451 20-41 (194)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=3.6e-105 Score=973.33 Aligned_cols=577 Identities=32% Similarity=0.478 Sum_probs=522.9
Q ss_pred chHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------------------chHHHHHHHH
Q psy5743 62 KKSELKKLFTLAKSEK-RKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSD------------------KKEMKEKMTS 122 (644)
Q Consensus 62 ~~~~~~~l~~~~~~~~-~~l~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~------------------~~~~~~~l~~ 122 (644)
++..++++++|..+.. ..++++++++++..+..++++++++.++|.+.... ...+...+..
T Consensus 58 ~~v~~~~Lfrya~~~d~~l~~~g~~~a~~~G~~~p~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (1321)
T 4f4c_A 58 NKVSIPQLYRYTTTLEKLLLFIGTLVAVITGAGLPLMSILQGKVSQAFINEQIVINNNGSTFLPTGQNYTKTDFEHDVMN 137 (1321)
T ss_dssp SCCCHHHHTTTCCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHTTSCBCSSTTCBCCHHHHHHHHHH
T ss_pred CCCCHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccchHHHHHHHHH
Confidence 3456778888775543 34455566666666666677788888888653210 1122334445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHhhHHHHHHHHHHHHHHH
Q psy5743 123 LSLLLMLVFVVGACCNFGRVYLMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDG 202 (644)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~sr~~~D~~~i~~~~~~~~~~~ 202 (644)
+++.++++.+...++.+++.++....++++..++|.++|+|++++|++||+++++|++++|+++|++.+++++...+..+
T Consensus 138 ~~~~~~~l~i~~~~~~~~~~~~~~~~~~r~~~~lR~~~~~~ll~~~~~~fd~~~~G~l~sr~~~D~~~i~~~~~~~l~~~ 217 (1321)
T 4f4c_A 138 VVWSYAAMTVGMWAAGQITVTCYLYVAEQMNNRLRREFVKSILRQEISWFDTNHSGTLATKLFDNLERVKEGTGDKIGMA 217 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHTCCTTHHHHHHHHHHHHHHTSSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666777777888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHHH
Q psy5743 203 LRSTVMVSAGVSMMFIISSKLALISLIIVPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLE 282 (644)
Q Consensus 203 ~~~~~~~i~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~ 282 (644)
+..++++++.++++++++|.+++++++++|+++++..++.++.++..++.++..++..+.+.|.++|+++||+||+|+.+
T Consensus 218 ~~~~~~~i~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~ 297 (1321)
T 4f4c_A 218 FQYLSQFITGFIVAFTHSWQLTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNGLRYE 297 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 283 MSHFNAKMDDLFELAKKEALAKGVFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYS 362 (644)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~~t~g~l~a~~~~~~~~~~~l~~l~~~~~ 362 (644)
.++|.+..++..+...+.........+...++..+..++++++|++++.+|.+++|.+++++.++..+..|+..++..+.
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~~~~~~~ 377 (1321)
T 4f4c_A 298 LERYSTAVEEAKKAGVLKGLFLGISFGAMQASNFISFALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGPQLA 377 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988888888888888888888888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCccCCCC-CccCCCCCccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcH
Q psy5743 363 ELNKGLGACHRLWEIMEREPLISTSGG-KFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGK 441 (644)
Q Consensus 363 ~~~~~~~s~~Rl~~~l~~~~~~~~~~~-~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGK 441 (644)
.++++.++++|+.++++.+|+.++... .....+..++|+|+||+|+||+++++++|+|+||+|+|||++||||||||||
T Consensus 378 ~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGK 457 (1321)
T 4f4c_A 378 VLGTAQGAASGIYEVLDRKPVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGK 457 (1321)
T ss_dssp HHHHHHHHHHHHHHHTTTSCCSSCSSSCCCCCCCCCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCH
T ss_pred HHHHHHHHHHHHHHHHcCCccccccccccccCCCCCCcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcH
Confidence 999999999999999988765433221 1122345678999999999997777899999999999999999999999999
Q ss_pred HHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhc
Q psy5743 442 STLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAY 521 (644)
Q Consensus 442 STLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~ 521 (644)
|||+++|+|+|+|++|+|.+||+|+++++.++||++||||+|+||||+|||||||+||+|+ ++++++++||+.|+++
T Consensus 458 STll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~---~~~~~v~~a~~~a~l~ 534 (1321)
T 4f4c_A 458 STIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEG---ITREEMVAACKMANAE 534 (1321)
T ss_dssp HHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTT---CCHHHHHHHHHHTTCH
T ss_pred HHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhccc---chHHHHHHHHHHccch
Confidence 9999999999999999999999999999999999999999999999999999999999886 8999999999999999
Q ss_pred cchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCch
Q psy5743 522 GFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLS 601 (644)
Q Consensus 522 ~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~ 601 (644)
+||++||+||||+|||+|.+|||||||||+||||+|+||+||||||||||||+++|+.|+++|.++.++||+|+||||++
T Consensus 535 ~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls 614 (1321)
T 4f4c_A 535 KFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLS 614 (1321)
T ss_dssp HHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTT
T ss_pred hHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCEEEEEeCCeEEEecChhHHhcCCCcHHHHHHHhhc
Q psy5743 602 TIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLMKYQT 642 (644)
Q Consensus 602 ~i~~aD~Iivl~~G~ive~Gt~~eLl~~~~~~y~~l~~~q~ 642 (644)
++++||+|+||++|+|+|+|||+||+++ +|.|+++++.|.
T Consensus 615 ~i~~aD~Iivl~~G~ive~Gth~eL~~~-~g~y~~l~~~q~ 654 (1321)
T 4f4c_A 615 TIRNADLIISCKNGQVVEVGDHRALMAQ-QGLYYDLVTAQT 654 (1321)
T ss_dssp TTTTCSEEEEEETTEEEEEECHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHhCCEEEEeeCCeeeccCCHHHHHHh-hhHHHHHHHhhh
Confidence 9999999999999999999999999987 799999998874
No 2
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=9.6e-103 Score=952.04 Aligned_cols=575 Identities=31% Similarity=0.492 Sum_probs=499.7
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 66 LKKLFTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVYLM 145 (644)
Q Consensus 66 ~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (644)
+.+++.+.+++++.++++++++++...+....++++...++....... ........++++++++.++..++.+++.++.
T Consensus 740 ~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~~ 818 (1321)
T 4f4c_A 740 LFEILYHARPHALSLFIGMSTATIGGFIYPTYSVFFTSFMNVFAGNPA-DFLSQGHFWALMFLVLAAAQGICSFLMTFFM 818 (1321)
T ss_dssp HHHHHHHTGGGHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHTSSCSS-TTTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667778888888888888888888888888888888887654332 1122334455666667777888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCChhhhhc--cChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 146 NVSAQSITKKLRERLFGSIISQETAYFDK--HKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKL 223 (644)
Q Consensus 146 ~~~~~~~~~~lr~~~~~~ll~~~~~~~~~--~~~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l 223 (644)
...+.++..++|.++|++++++|++||+. +++|+++||+++|++.+++.+...+..++.+++.+++.++++++++|++
T Consensus 819 ~~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~l 898 (1321)
T 4f4c_A 819 GIASESLTRDLRNKLFRNVLSQHIGFFDSPQNASGKISTRLATDVPNLRTAIDFRFSTVITTLVSMVAGIGLAFFYGWQM 898 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCSSSTTSGGGCHHHHHHHHHTHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCchhhccCCCChHHHHhcchhhHHHHHHHHHHHHHHHHHHhhhHHHHeeeehHHhHHH
Confidence 99999999999999999999999999985 7899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 224 ALISLIIVPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALA 303 (644)
Q Consensus 224 ~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 303 (644)
++++++++|++++..+++.++.+....+..+..++....+.|+++|+++||+|++|+.+.++|.+..++..+...+....
T Consensus 899 ~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 978 (1321)
T 4f4c_A 899 ALLIIAILPIVAFGQYLRGRRFTGKNVKSASEFADSGKIAIEAIENVRTVQALAREDTFYENFCEKLDIPHKEAIKEAFI 978 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCCSSCSTTTSSHHHHHHHHHHHHHHTHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888888877777777777788888899999999999999999999999999999999988888887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy5743 304 KGVFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNL--SSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMERE 381 (644)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~~t~g~l--~a~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~Rl~~~l~~~ 381 (644)
..+...+...+..+..++++++|++++..+..+.+.+ ++++.+......|+..+...+.+++++..+.+|+.++++.+
T Consensus 979 ~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~ 1058 (1321)
T 4f4c_A 979 QGLSYGCASSVLYLLNTCAYRMGLALIITDPPTMQPMRVLRVMYAITISTSTLGFATSYFPEYAKATFAGGIIFGMLRKI 1058 (1321)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHTTSSSSCSSCHHHHHHHHHHHHTTTSSTTGGGGHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 7777777766777777888899999998888776654 44444455555688888899999999999999999999987
Q ss_pred CCccCCCCCccCCCCCccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEE
Q psy5743 382 PLISTSGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILI 461 (644)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i 461 (644)
++.++.....+.++..|+|+|+||+|+||++++.+||+||||+|+|||+||||||||||||||+++|+|+|+|++|+|+|
T Consensus 1059 ~~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~i 1138 (1321)
T 4f4c_A 1059 SKIDSLSLAGEKKKLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFI 1138 (1321)
T ss_dssp CSSCTTCCCSBCCCCCCCEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEE
T ss_pred ccCCCccCCCCCCCCCCeEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEE
Confidence 76544333333456678899999999999776778999999999999999999999999999999999999999999999
Q ss_pred CCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCC
Q psy5743 462 DGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIM 541 (644)
Q Consensus 462 dg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~ 541 (644)
||+|++++++++||++|++|||||+||+|||||||+||.++ .+++|+|+++||+.+++++||++||+||||+|||+|.+
T Consensus 1139 DG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~-~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~ 1217 (1321)
T 4f4c_A 1139 DGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDP-SSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQ 1217 (1321)
T ss_dssp TTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCT-TTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCS
T ss_pred CCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCCC-CCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcc
Confidence 99999999999999999999999999999999999999643 35899999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEec
Q psy5743 542 LSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIG 621 (644)
Q Consensus 542 LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~G 621 (644)
|||||||||||||||+|||+||||||||||||++||+.|+++|++.+++||+|+|||||+|+++||+|+|||+|+|+|+|
T Consensus 1218 LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~aD~I~Vld~G~IvE~G 1297 (1321)
T 4f4c_A 1218 LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMNADCIAVVSNGTIIEKG 1297 (1321)
T ss_dssp SCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTTTCSEEEEESSSSEEEEE
T ss_pred cCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHhCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHhcCCCcHHHHHHHhhcC
Q psy5743 622 SYAHLIKNPNSMFNKLMKYQTM 643 (644)
Q Consensus 622 t~~eLl~~~~~~y~~l~~~q~~ 643 (644)
||+||+++ +|.|++||+.|..
T Consensus 1298 th~eLl~~-~g~y~~L~~~Q~~ 1318 (1321)
T 4f4c_A 1298 THTQLMSE-KGAYYKLTQKQMT 1318 (1321)
T ss_dssp CHHHHHHC-C------------
T ss_pred CHHHHHhC-CcHHHHHHHHHHh
Confidence 99999997 7999999999875
No 3
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=6.7e-100 Score=859.50 Aligned_cols=569 Identities=26% Similarity=0.437 Sum_probs=520.8
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 67 KKLFTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVYLMN 146 (644)
Q Consensus 67 ~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (644)
++++++++++|+.++.+++++++..++.++.|++++.++|.+....+ ...+..+.++++++.++..++.+++.+...
T Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (587)
T 3qf4_A 12 KTLARYLKPYWIFAVLAPLFMVVEVICDLSQPTLLARIVDEGIARGD---FSLVLKTGILMLIVALIGAVGGIGCTVFAS 88 (587)
T ss_dssp CCGGGGTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667889999999999999999999999999999999998765432 223344455556666777788889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 147 VSAQSITKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLALI 226 (644)
Q Consensus 147 ~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li 226 (644)
+.+.++..++|.++|+|++++|+.+|+++++|++++|+++|++.+++++...+..++..++++++.++++++++|.++++
T Consensus 89 ~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l~ 168 (587)
T 3qf4_A 89 YASQNFGADLRRDLFRKVLSFSISNVNRFHTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLSSV 168 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTTTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999888888888888888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 227 SLIIVPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAKGV 306 (644)
Q Consensus 227 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (644)
+++++|+++++..++.++.++..++..+..++..+.+.|.++|+++||+|++|+.+.++|.+..++..+...+..+....
T Consensus 169 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (587)
T 3qf4_A 169 LIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFSLIVF 248 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998888888777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccC
Q psy5743 307 FFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMEREPLIST 386 (644)
Q Consensus 307 ~~~~~~~~~~~~~~~vl~~g~~~v~~g~~t~g~l~a~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~Rl~~~l~~~~~~~~ 386 (644)
...+..++..+..++++++|++++..|.+++|.++++..+...+..|+..++..+..++++..+.+|+.++++.+++.++
T Consensus 249 ~~~~~~~~~~~~~~~vl~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~ 328 (587)
T 3qf4_A 249 ALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKPAIEE 328 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCC
Confidence 77777777777888899999999999999999999999999999999999999999999999999999999987765433
Q ss_pred CCCCccCCCCCccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccC
Q psy5743 387 SGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDI 466 (644)
Q Consensus 387 ~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i 466 (644)
.....+.++..+.|+++||+|+|++ .++++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|.+||+|+
T Consensus 329 ~~~~~~~~~~~~~i~~~~v~~~y~~-~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i 407 (587)
T 3qf4_A 329 ADNALALPNVEGSVSFENVEFRYFE-NTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDV 407 (587)
T ss_dssp CTTCBCCSCCCCCEEEEEEEECSSS-SSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBG
T ss_pred CCCccccCCCCCcEEEEEEEEEcCC-CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEc
Confidence 2222122234568999999999985 356899999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhH
Q psy5743 467 KELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQ 546 (644)
Q Consensus 467 ~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQ 546 (644)
++++.+++|++|+||||+|++|++||+|||.+|.++ .++++++++++.++++++++++|+|+||.+||+|.+|||||
T Consensus 408 ~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~---~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGq 484 (587)
T 3qf4_A 408 RTVKLKDLRGHISAVPQETVLFSGTIKENLKWGRED---ATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQ 484 (587)
T ss_dssp GGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTCSS---CCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHH
T ss_pred ccCCHHHHHhheEEECCCCcCcCccHHHHHhccCCC---CCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHH
Confidence 999999999999999999999999999999999875 78999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEecChhHH
Q psy5743 547 KQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHL 626 (644)
Q Consensus 547 kQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eL 626 (644)
|||++||||++++|+|||||||||+||+++|+.|++.|+++.+++|+|+||||+++++.||+|++|++|+|+|.|+|+||
T Consensus 485 rQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g~~~el 564 (587)
T 3qf4_A 485 KQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKEL 564 (587)
T ss_dssp HHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHTTSSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred hcCCCcHHHHHHHhhcC
Q psy5743 627 IKNPNSMFNKLMKYQTM 643 (644)
Q Consensus 627 l~~~~~~y~~l~~~q~~ 643 (644)
+++ ++.|+++++.|..
T Consensus 565 ~~~-~~~~~~~~~~~~~ 580 (587)
T 3qf4_A 565 LEH-CKPYREIYESQFG 580 (587)
T ss_dssp HHH-CHHHHHHHHHHC-
T ss_pred HhC-CcHHHHHHHHHhc
Confidence 987 6999999998853
No 4
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=3.2e-100 Score=861.80 Aligned_cols=572 Identities=31% Similarity=0.498 Sum_probs=523.8
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Q psy5743 66 LKKLFTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKM----TSLSLLLMLVFVVGACCNFGR 141 (644)
Q Consensus 66 ~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~l----~~~~~~~~~~~~~~~~~~~~~ 141 (644)
+++++++++++++.++.+++++++..++.++.|+++++++|.+...........+ ..++++++++.++..++.+++
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (578)
T 4a82_A 2 IKRYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIR 81 (578)
T ss_dssp HHHHHHHHGGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678889999999999999999999999999999999999988754321101112 334445555666777888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 142 VYLMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISS 221 (644)
Q Consensus 142 ~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~ 221 (644)
.+...+.+.++..++|.++|+|++++|+.+|+++++|++++|+++|++.+++++...+..++.+++.+++.++++++++|
T Consensus 82 ~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~ 161 (578)
T 4a82_A 82 QYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDV 161 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 99999999999999999999999999999999999999999999999999999888888889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 222 KLALISLIIVPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEA 301 (644)
Q Consensus 222 ~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 301 (644)
++++++++++|+++++..++.++.++..++..+..++..+.+.|.++|+++||+||+|+.+.++|.+..++..+...+..
T Consensus 162 ~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 241 (578)
T 4a82_A 162 KLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHT 241 (578)
T ss_dssp TTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy5743 302 LAKGVFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMERE 381 (644)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~~t~g~l~a~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~Rl~~~l~~~ 381 (644)
+..........++..+..++++++|++++..|.+++|.++++..+...+..|+..++..+..++++..+++|+.++++.+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~ 321 (578)
T 4a82_A 242 RWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDED 321 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 88888888888887788888999999999999999999999999999999999999999999999999999999999877
Q ss_pred CCccCCCCCccCCCCCccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEE
Q psy5743 382 PLISTSGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILI 461 (644)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i 461 (644)
++.++.....+.++..+.|+++||+|+|++ .++++|+|+||++++||++|||||||||||||+++|+|+++|++|+|.+
T Consensus 322 ~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~-~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~ 400 (578)
T 4a82_A 322 YDIKNGVGAQPIEIKQGRIDIDHVSFQYND-NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILI 400 (578)
T ss_dssp CSSCCCTTCCCCCCCSCCEEEEEEEECSCS-SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEE
T ss_pred CcccCCCCccccCCCCCeEEEEEEEEEcCC-CCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEE
Confidence 654332222222234568999999999985 3568999999999999999999999999999999999999999999999
Q ss_pred CCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCC
Q psy5743 462 DGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIM 541 (644)
Q Consensus 462 dg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~ 541 (644)
||+|+++++.+++|++++||||+|++|++||+|||.+|.|+ .++++++++++.++++++++++|+|+||.+||+|.+
T Consensus 401 ~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~---~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~ 477 (578)
T 4a82_A 401 DGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPT---ATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVK 477 (578)
T ss_dssp TTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSS---CCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTT
T ss_pred CCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCCCC---CCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCc
Confidence 99999999999999999999999999999999999999875 789999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEec
Q psy5743 542 LSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIG 621 (644)
Q Consensus 542 LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~G 621 (644)
||||||||++||||++++|+|+|||||||+||+++|+.+.+.++++.+++|+|+||||+++++.||+|++|++|+|+|.|
T Consensus 478 LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g 557 (578)
T 4a82_A 478 LSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETG 557 (578)
T ss_dssp SCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999999999998899999999999999999999999999999999
Q ss_pred ChhHHhcCCCcHHHHHHHhhc
Q psy5743 622 SYAHLIKNPNSMFNKLMKYQT 642 (644)
Q Consensus 622 t~~eLl~~~~~~y~~l~~~q~ 642 (644)
+|+||+++ ++.|+++++.|.
T Consensus 558 ~~~el~~~-~~~~~~~~~~q~ 577 (578)
T 4a82_A 558 THRELIAK-QGAYEHLYSIQN 577 (578)
T ss_dssp CHHHHHHT-TSHHHHHHTTTT
T ss_pred CHHHHHhC-CcHHHHHHHhhc
Confidence 99999987 689999999875
No 5
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=6e-100 Score=862.32 Aligned_cols=570 Identities=31% Similarity=0.507 Sum_probs=526.6
Q ss_pred hHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 63 KSELKKLFTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRV 142 (644)
Q Consensus 63 ~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 142 (644)
+..+++++++++++++.++.+++++++.+++.++.|++++.++|.+....+. ..+..++++++++.++..++.+++.
T Consensus 22 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (598)
T 3qf4_B 22 TATLRRLLGYLRPHTFTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRRF---DLLPRYMLILGTIYALTSLLFWLQG 98 (598)
T ss_dssp HHHHHHHGGGTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCG---GGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888999999999999999999999999999999999999988653321 2334445556666777888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 143 YLMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSK 222 (644)
Q Consensus 143 ~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~ 222 (644)
+.....+.++..++|.++|+|++++|+.+|+++++|++++|+++|++.+++++...+..++.+++++++.++++++++|+
T Consensus 99 ~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~ 178 (598)
T 3qf4_B 99 KIMLTLSQDVVFRLRKELFEKLQRVPVGFFDRTPHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVI 178 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCTHHHHHSCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 223 LALISLIIVPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEAL 302 (644)
Q Consensus 223 l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 302 (644)
+++++++++|+++++..++.++.++..++..+..++..+.+.|.++|+++||+||+|+.+.++|.+..++..+...+..+
T Consensus 179 l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 258 (598)
T 3qf4_B 179 LSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQI 258 (598)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy5743 303 AKGVFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMEREP 382 (644)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~~t~g~l~a~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~Rl~~~l~~~~ 382 (644)
.......+..++..+..++++++|++++..|.+++|.+++++.+...+..|+..++..+..++++..+.+|+.++++.++
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~ 338 (598)
T 3qf4_B 259 FSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEE 338 (598)
T ss_dssp HTTTHHHHHHHHHHHHHHHHHHHHHHHGGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 88888888778777888889999999999999999999999999999999999999999999999999999999998776
Q ss_pred CccCCCCCccCCCCCccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEEC
Q psy5743 383 LISTSGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILID 462 (644)
Q Consensus 383 ~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~id 462 (644)
+...... .+.++..++|+++||+|+|++ ++++|+|+||++++||++|||||||||||||+++|+|+|+|++|+|.+|
T Consensus 339 ~~~~~~~-~~~~~~~~~i~~~~v~~~y~~--~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~ 415 (598)
T 3qf4_B 339 EKDDPDA-VELREVRGEIEFKNVWFSYDK--KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVD 415 (598)
T ss_dssp CCCCSSC-CCCCSCCCCEEEEEEECCSSS--SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEET
T ss_pred CCCCCCC-CCCCCCCCeEEEEEEEEECCC--CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEEC
Confidence 5432211 122334568999999999974 4679999999999999999999999999999999999999999999999
Q ss_pred CccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCC
Q psy5743 463 GVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIML 542 (644)
Q Consensus 463 g~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~L 542 (644)
|+|+++++.+++|++++||||+|++|++||+|||.+|.++ .++++++++++.++++++++++|+||||.+||+|.+|
T Consensus 416 g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~L 492 (598)
T 3qf4_B 416 GIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPG---ATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDL 492 (598)
T ss_dssp TEEGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSSTT---CCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTS
T ss_pred CEEhhhCCHHHHHhceEEEeCCCccccccHHHHHhcCCCC---CCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCC
Confidence 9999999999999999999999999999999999999875 7889999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEecC
Q psy5743 543 SGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGS 622 (644)
Q Consensus 543 SGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt 622 (644)
||||||||+||||++++|+|||||||||+||+++|+.+.+.|+++.+++|+|+||||+++++.||+|++|++|+|+|.|+
T Consensus 493 SgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~ 572 (598)
T 3qf4_B 493 SQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGK 572 (598)
T ss_dssp CHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHHCSEEEEECSSSEEECSC
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred hhHHhcCCCcHHHHHHHhhc
Q psy5743 623 YAHLIKNPNSMFNKLMKYQT 642 (644)
Q Consensus 623 ~~eLl~~~~~~y~~l~~~q~ 642 (644)
|+||+++ +|.|+++++.|.
T Consensus 573 ~~~l~~~-~~~~~~~~~~~~ 591 (598)
T 3qf4_B 573 HDELIQK-RGFYYELFTSQY 591 (598)
T ss_dssp HHHHHHT-TCHHHHHHHHHH
T ss_pred HHHHHhC-CCHHHHHHHHHh
Confidence 9999987 799999998874
No 6
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=1.5e-97 Score=843.38 Aligned_cols=579 Identities=55% Similarity=0.895 Sum_probs=507.0
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 65 ELKKLFTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVYL 144 (644)
Q Consensus 65 ~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 144 (644)
.+++++.+.+++++.++.+++++++.+++.++.|+++++++|.+...........+..+.++++++.++..++.+++.+.
T Consensus 6 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (595)
T 2yl4_A 6 EARKLLGLAYPERRRLAAAVGFLTMSSVISMSAPFFLGKIIDVIYTNPTVDYSDNLTRLCLGLSAVFLCGAAANAIRVYL 85 (595)
T ss_dssp HHHHHHHHHGGGHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677888899999999999999999999999999999999987643211111123333344455566677888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 145 MNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLA 224 (644)
Q Consensus 145 ~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~ 224 (644)
..+.+.++..++|.++|+|++++|+++|+++++|++++|+++|++.+++++...+..++.+++.+++.++++++++|+++
T Consensus 86 ~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~ 165 (595)
T 2yl4_A 86 MQTSGQRIVNRLRTSLFSSILRQEVAFFDKTRTGELINRLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNLA 165 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCHHHHHHSCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 225 LISLIIVPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAK 304 (644)
Q Consensus 225 li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (644)
+++++++|+++++..++.++.++..++..+..++..+.+.|.++|+++||+||+|+.+.++|.+..++..+...+..+..
T Consensus 166 li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (595)
T 2yl4_A 166 TFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFAR 245 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998889999999999999999999999999999999999999999999999999999999999888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q psy5743 305 GVFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMEREPLI 384 (644)
Q Consensus 305 ~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~~t~g~l~a~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~Rl~~~l~~~~~~ 384 (644)
........++..+..++++++|++++..|.+|+|.++++..+...+..|+..++..+..++++..+.+|+.++++.+++.
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~ 325 (595)
T 2yl4_A 246 AGFFGATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLEREPKL 325 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 88877777777777888899999999999999999999999999999999999999999999999999999999876653
Q ss_pred cCCCCCccCCCCCcc-EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECC
Q psy5743 385 STSGGKFFSHSLKGE-IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDG 463 (644)
Q Consensus 385 ~~~~~~~~~~~~~~~-I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg 463 (644)
++.....+..+..++ |+++||+|+|++++++++|+|+||++++||++|||||||||||||+++|+|+++|++|+|.+||
T Consensus 326 ~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g 405 (595)
T 2yl4_A 326 PFNEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDG 405 (595)
T ss_dssp CSSCSBCCCTTTCCCCEEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETT
T ss_pred CCCCCCCCCcCCCCCeEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECC
Confidence 322221111223467 9999999999753345799999999999999999999999999999999999999999999999
Q ss_pred ccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCC
Q psy5743 464 VDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLS 543 (644)
Q Consensus 464 ~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LS 543 (644)
+|+++++.+++|++++||||+|++|++||+|||.+|.+.....++++++++++.++++++++++|+|+||.+||+|.+||
T Consensus 406 ~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LS 485 (595)
T 2yl4_A 406 HDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLS 485 (595)
T ss_dssp EETTTBCHHHHHHSEEEECSSCCCCSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCC
T ss_pred EEhhhCCHHHHHhceEEEccCCcccCCCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCC
Confidence 99999999999999999999999999999999999976322368999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEecCh
Q psy5743 544 GGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSY 623 (644)
Q Consensus 544 GGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~ 623 (644)
||||||++||||++++|+|||||||||+||+++++.+.+.|+++.+++|+|+||||+++++.||+|++|++|++++.|+|
T Consensus 486 gGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~ 565 (595)
T 2yl4_A 486 GGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKNANMVAVLDQGKITEYGKH 565 (595)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECS
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCH
Confidence 99999999999999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred hHHhcCCCcHHHHHHHhhcC
Q psy5743 624 AHLIKNPNSMFNKLMKYQTM 643 (644)
Q Consensus 624 ~eLl~~~~~~y~~l~~~q~~ 643 (644)
+||++++++.|+++++.|..
T Consensus 566 ~~l~~~~~~~~~~~~~~q~~ 585 (595)
T 2yl4_A 566 EELLSKPNGIYRKLMNKQSF 585 (595)
T ss_dssp CC------C-----------
T ss_pred HHHHhCCChHHHHHHHHhhc
Confidence 99997447899999988753
No 7
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=5.7e-97 Score=836.50 Aligned_cols=570 Identities=29% Similarity=0.482 Sum_probs=520.5
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 64 SELKKLFTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVY 143 (644)
Q Consensus 64 ~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 143 (644)
..+++++++++++++.++.+++++++.+++.++.|+++++++|.+...... ..+..+.++++++.++..++.+++.+
T Consensus 11 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (582)
T 3b5x_A 11 QTFKRLWTYIRLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAES---NFLRILPFMILGLMFVRGLSGFASSY 87 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCch---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888899999999899999999999999999999999987643221 22223333345566777888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 144 LMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKL 223 (644)
Q Consensus 144 ~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l 223 (644)
...+.+.++..++|.++|+|++++|+.+|+++++|++++|+++|++.+++++...+..++.+++++++.++++++++|++
T Consensus 88 ~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~l~~rl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l 167 (582)
T 3b5x_A 88 CLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQL 167 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 224 ALISLIIVPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALA 303 (644)
Q Consensus 224 ~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 303 (644)
++++++++|+++++..++.++.++..++..+..++..+.+.|.++|+++||+|++|+.+.++|.+..++..+...+..+.
T Consensus 168 ~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 247 (582)
T 3b5x_A 168 SLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSA 247 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888899999999999999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy5743 304 KGVFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMEREPL 383 (644)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~~t~g~l~a~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~Rl~~~l~~~~~ 383 (644)
......+..++..+..++++++|++++.+|.+++|.+++++.+...+..|+..++..+..++++..+.+|+.++++.+++
T Consensus 248 ~~~~~~~~~~~~~~~~~~i~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~ 327 (582)
T 3b5x_A 248 QSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETE 327 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 88888888888888888889999999999999999999999999999999999999999999999999999999987665
Q ss_pred ccCCCCCccCCCCCccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECC
Q psy5743 384 ISTSGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDG 463 (644)
Q Consensus 384 ~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg 463 (644)
.++. . .+.++..+.|+++||+|+|+++ ++++|+|+||++++||++|||||||||||||+++|+|+++|++|+|.+||
T Consensus 328 ~~~~-~-~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g 404 (582)
T 3b5x_A 328 RDNG-K-YEAERVNGEVDVKDVTFTYQGK-EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDG 404 (582)
T ss_pred CCCC-C-CCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECC
Confidence 3221 1 1112234579999999999742 36799999999999999999999999999999999999999999999999
Q ss_pred ccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCC-CCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCC
Q psy5743 464 VDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGV-NDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIML 542 (644)
Q Consensus 464 ~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~-~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~L 542 (644)
+|+++++.+++|++++||||+|++|++|++|||.+|. ++ .++++++++++.++++++++++|+||||.+||+|.+|
T Consensus 405 ~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~L 481 (582)
T 3b5x_A 405 HDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGE---YTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSL 481 (582)
T ss_pred EEhhhCCHHHHhcCeEEEcCCCccccccHHHHHhccCCCC---CCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcC
Confidence 9999999999999999999999999999999999997 44 7899999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEecC
Q psy5743 543 SGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGS 622 (644)
Q Consensus 543 SGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt 622 (644)
|||||||++||||++++|+|||||||||+||+++++.+.+.|+++.+++|+|+||||+++++.||+|++|++|++++.|+
T Consensus 482 SgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~ 561 (582)
T 3b5x_A 482 SGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGR 561 (582)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred hhHHhcCCCcHHHHHHHhhcC
Q psy5743 623 YAHLIKNPNSMFNKLMKYQTM 643 (644)
Q Consensus 623 ~~eLl~~~~~~y~~l~~~q~~ 643 (644)
|+||+++ ++.|+++++.|..
T Consensus 562 ~~~l~~~-~~~~~~~~~~q~~ 581 (582)
T 3b5x_A 562 HADLLAQ-DGAYAQLHRIQFG 581 (582)
T ss_pred HHHHHhC-CcHHHHHHHHhhc
Confidence 9999986 6899999998853
No 8
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=6.3e-97 Score=836.20 Aligned_cols=570 Identities=30% Similarity=0.491 Sum_probs=520.5
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 64 SELKKLFTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVY 143 (644)
Q Consensus 64 ~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 143 (644)
..+++++++++++++.++.+++++++.+++.++.|+++++++|.+..... ...+..++++++++.++..++.+++.+
T Consensus 11 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (582)
T 3b60_A 11 QTFRRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTD---RSVLLWMPLVVIGLMILRGITSYISSY 87 (582)
T ss_dssp HHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTT---HHHHHHSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc---hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888889999999999999999999999999999999997754322 122223333345566777888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 144 LMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKL 223 (644)
Q Consensus 144 ~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l 223 (644)
...+.+.++..++|.++|+|++++|+.+|+++++|++++|+++|++.+++++...+..++.+++++++.++++++++|++
T Consensus 88 ~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l 167 (582)
T 3b60_A 88 CISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQL 167 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 224 ALISLIIVPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALA 303 (644)
Q Consensus 224 ~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 303 (644)
++++++++|+++++..++.++.++..++..+..++..+.+.|.++|+++||+||+|+.+.++|.+..++..+...+..+.
T Consensus 168 ~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 247 (582)
T 3b60_A 168 SIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSA 247 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888899999999999999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy5743 304 KGVFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMEREPL 383 (644)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~~t~g~l~a~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~Rl~~~l~~~~~ 383 (644)
.........++..+..++++++|++++..|.+++|.+++++.+...+..|+..++..+..++++..+.+|+.++++.+++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~ 327 (582)
T 3b60_A 248 SSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQE 327 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 88888888888778888889999999999999999999999999999999999999999999999999999999987665
Q ss_pred ccCCCCCccCCCCCccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECC
Q psy5743 384 ISTSGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDG 463 (644)
Q Consensus 384 ~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg 463 (644)
.++ .. .+.++..+.|+++||+|+|+++ ++++|+|+||++++||++|||||||||||||+++|+|+++|++|+|.+||
T Consensus 328 ~~~-~~-~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g 404 (582)
T 3b60_A 328 KDE-GK-RVIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDG 404 (582)
T ss_dssp CCC-CC-BCCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETT
T ss_pred ccC-CC-CCCCCCCCcEEEEEEEEEcCCC-CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECC
Confidence 322 11 1112234679999999999742 36799999999999999999999999999999999999999999999999
Q ss_pred ccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCC-CCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCC
Q psy5743 464 VDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGV-NDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIML 542 (644)
Q Consensus 464 ~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~-~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~L 542 (644)
+|+++++.+++|++++||||+|++|++|++|||.++. ++ .++++++++++.++++++++++|+||||.+||+|.+|
T Consensus 405 ~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~---~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~L 481 (582)
T 3b60_A 405 HDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEE---YSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLL 481 (582)
T ss_dssp EETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSC---CCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSS
T ss_pred EEccccCHHHHHhhCeEEccCCcCCCCCHHHHHhccCCCC---CCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCC
Confidence 9999999999999999999999999999999999996 44 7899999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEecC
Q psy5743 543 SGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGS 622 (644)
Q Consensus 543 SGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt 622 (644)
|||||||++||||++++|+|||||||||+||+++|+.+.+.|+++.+++|+|+||||+++++.||+|++|++|++++.|+
T Consensus 482 SgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~ 561 (582)
T 3b60_A 482 SGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGT 561 (582)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEEC
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEecC
Confidence 99999999999999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred hhHHhcCCCcHHHHHHHhhcC
Q psy5743 623 YAHLIKNPNSMFNKLMKYQTM 643 (644)
Q Consensus 623 ~~eLl~~~~~~y~~l~~~q~~ 643 (644)
|+||+++ ++.|+++++.|..
T Consensus 562 ~~~l~~~-~~~~~~~~~~q~~ 581 (582)
T 3b60_A 562 HSELLAQ-HGVYAQLHKMQFG 581 (582)
T ss_dssp HHHHHHH-TSSHHHHHHHTCC
T ss_pred HHHHHHc-CCHHHHHHHHhcc
Confidence 9999986 6899999998854
No 9
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=1.6e-94 Score=877.77 Aligned_cols=574 Identities=35% Similarity=0.529 Sum_probs=519.2
Q ss_pred HHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-----------------hHHHHHHHHHHHH
Q psy5743 65 ELKKLFTLAK-SEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDK-----------------KEMKEKMTSLSLL 126 (644)
Q Consensus 65 ~~~~l~~~~~-~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~-----------------~~~~~~l~~~~~~ 126 (644)
.+.+++++.. .+|..++++++++++..+...+.|++++.++|.+..... ......+..+.++
T Consensus 34 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (1284)
T 3g5u_A 34 SVLTMFRYAGWLDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTTYAYY 113 (1284)
T ss_dssp TTHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhHHHHHHHHHH
Confidence 4566777764 456677778888888888899999999999997642110 0011233445566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhhhccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy5743 127 LMLVFVVGACCNFGRVYLMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRST 206 (644)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~ 206 (644)
++++.++..++.+++.++....+.++..++|.++|+|++++|+.||+++++|++++|+++|++.+++.+...+..++.++
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~f~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~ 193 (1284)
T 3g5u_A 114 YTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTDDVSKINEGIGDKIGMFFQAM 193 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677778888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHHHHHHH
Q psy5743 207 VMVSAGVSMMFIISSKLALISLIIVPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHF 286 (644)
Q Consensus 207 ~~~i~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~ 286 (644)
+++++.++++++++|++++++++++|+++++..++.++.++..++.++..++.++.+.|.++|+++||+||+|+.+.++|
T Consensus 194 ~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ikaf~~e~~~~~~~ 273 (1284)
T 3g5u_A 194 ATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERY 273 (1284)
T ss_dssp HHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHTTCCCCSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHhcchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 287 NAKMDDLFELAKKEALAKGVFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSELNK 366 (644)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~~t~g~l~a~~~~~~~~~~~l~~l~~~~~~~~~ 366 (644)
.+..++..+...+..+......++..++..+..++++|+|++++..|.+++|.+++++.+......|+..+...+..+++
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (1284)
T 3g5u_A 274 NNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFAN 353 (1284)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888888888888888877787888888999999999999999999999888888888999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCccCCC-CCccCCCCCccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHH
Q psy5743 367 GLGACHRLWEIMEREPLISTSG-GKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLA 445 (644)
Q Consensus 367 ~~~s~~Rl~~~l~~~~~~~~~~-~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl 445 (644)
+..+.+|+.++++.+++.++.. ......+..+.|+++||+|+|++++++++|+|+||+|+|||++|||||||||||||+
T Consensus 354 ~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~ 433 (1284)
T 3g5u_A 354 ARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTV 433 (1284)
T ss_dssp HHHHHHHHHHTTSCCCCCSSCCSSCCCCTTCCCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHH
T ss_pred HHHHHHHHHHHHcCCCcCCcccccCCCCCCCCCeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHH
Confidence 9999999999998776543211 111122345789999999999865556899999999999999999999999999999
Q ss_pred HHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchh
Q psy5743 446 MLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVI 525 (644)
Q Consensus 446 ~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~ 525 (644)
++|+|+|+|++|+|.+||+|+++++++++|++||||+|+|+||++||+|||.+|.++ .++++++++++.++++++++
T Consensus 434 ~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~---~~~~~~~~~~~~~~~~~~i~ 510 (1284)
T 3g5u_A 434 QLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGRED---VTMDEIEKAVKEANAYDFIM 510 (1284)
T ss_dssp HHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCSS---CCHHHHHHHHHHTTCHHHHH
T ss_pred HHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCCCC---CCHHHHHHHHHHhCcHHHHH
Confidence 999999999999999999999999999999999999999999999999999999875 88999999999999999999
Q ss_pred hhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhh
Q psy5743 526 DFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRK 605 (644)
Q Consensus 526 ~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~ 605 (644)
++|+||||.+||+|.+|||||||||+||||++++|+|||||||||+||+++|+.+++.+++..+++|+|+||||++++++
T Consensus 511 ~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~ 590 (1284)
T 3g5u_A 511 KLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRN 590 (1284)
T ss_dssp HSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHTT
T ss_pred hccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999998899999999999999999
Q ss_pred cCEEEEEeCCeEEEecChhHHhcCCCcHHHHHHHhhc
Q psy5743 606 SNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLMKYQT 642 (644)
Q Consensus 606 aD~Iivl~~G~ive~Gt~~eLl~~~~~~y~~l~~~q~ 642 (644)
||+|+||++|+|+|+|+|+||+++ +|.|++++..|.
T Consensus 591 ~d~i~vl~~G~i~~~g~~~~l~~~-~~~~~~~~~~~~ 626 (1284)
T 3g5u_A 591 ADVIAGFDGGVIVEQGNHDELMRE-KGIYFKLVMTQT 626 (1284)
T ss_dssp CSEEEECSSSCCCCEECHHHHHHT-TSHHHHHHHHTC
T ss_pred CCEEEEEECCEEEEECCHHHHHhC-CCHHHHHHHHhh
Confidence 999999999999999999999987 799999998764
No 10
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=7.6e-89 Score=827.93 Aligned_cols=576 Identities=32% Similarity=0.510 Sum_probs=518.1
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 66 LKKLFTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDK-KEMKEKMTSLSLLLMLVFVVGACCNFGRVYL 144 (644)
Q Consensus 66 ~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 144 (644)
+.+++++.+++|+.++.+++++++..++..+.|++++.+++.+..... .........+.++++++.++..+..+++.+.
T Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~ 772 (1284)
T 3g5u_A 693 FWRILKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQNSNLFSLLFLILGIISFITFFLQGFT 772 (1284)
T ss_dssp TTHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888899999899999999999999999999999987764322 1222333445556666667777888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCChhhhh--ccChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 145 MNVSAQSITKKLRERLFGSIISQETAYFD--KHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSK 222 (644)
Q Consensus 145 ~~~~~~~~~~~lr~~~~~~ll~~~~~~~~--~~~~G~i~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~ 222 (644)
..+.+.++..++|..+|++++++|+.||+ ++++|++++|+++|++.+++++...+..++.+++.+++.++++++++|.
T Consensus 773 ~~~~~~~~~~~lr~~l~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~ 852 (1284)
T 3g5u_A 773 FGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQ 852 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCSHHHHSCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999999999999999999 4899999999999999999999999999999998889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 223 LALISLIIVPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEAL 302 (644)
Q Consensus 223 l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 302 (644)
+++++++++|+++++.++..+..+....+..+..++....+.|.++|+++||+|++|+.+.++|.+..+...+...+...
T Consensus 853 l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~ti~a~~~e~~~~~~~~~~~~~~~~~~~~~~~ 932 (1284)
T 3g5u_A 853 LTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAH 932 (1284)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTTTTCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888888888888888888899999999999999999999999999999999999988888888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy5743 303 AKGVFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMEREP 382 (644)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~~t~g~l~a~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~Rl~~~l~~~~ 382 (644)
.......+...+..+..++++++|++++..|.+++|.++++..+......|+..+...+..++++..+.+|+.++++.++
T Consensus 933 ~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~ 1012 (1284)
T 3g5u_A 933 VFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTP 1012 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCSSSCSCSTTHHHHHHHHHHHHHHHHHHTSSSCCSTHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 77777777777777888889999999999999999999999999998889999998888899999999999999998876
Q ss_pred CccCCCC-CccCCCCCccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEE
Q psy5743 383 LISTSGG-KFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILI 461 (644)
Q Consensus 383 ~~~~~~~-~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i 461 (644)
+...... ..+.++..+.|+++||+|+|+++++.++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|.+
T Consensus 1013 ~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i 1092 (1284)
T 3g5u_A 1013 EIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFL 1092 (1284)
T ss_dssp SSSSCCSSCCCTTTTSCCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEES
T ss_pred cccccccccccccCCCCcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEE
Confidence 5432211 111223457899999999998654567999999999999999999999999999999999999999999999
Q ss_pred CCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCC
Q psy5743 462 DGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIM 541 (644)
Q Consensus 462 dg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~ 541 (644)
||+|+++++++++|++++||||||.+|++||+|||.+|.+. ...++++++++++.+++++++.++|+||||.|||+|.+
T Consensus 1093 ~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~-~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~ 1171 (1284)
T 3g5u_A 1093 DGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNS-RVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQ 1171 (1284)
T ss_dssp SSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSS-CCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCS
T ss_pred CCEEcccCCHHHHHhceEEECCCCccccccHHHHHhccCCC-CCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCc
Confidence 99999999999999999999999999999999999999764 34789999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEec
Q psy5743 542 LSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIG 621 (644)
Q Consensus 542 LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~G 621 (644)
|||||||||+|||||+++|+|||||||||+||+++|+.|++.|++..+++|+|+||||+++++.||+|+||++|+|+|.|
T Consensus 1172 LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~~~dri~vl~~G~i~~~g 1251 (1284)
T 3g5u_A 1172 LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHG 1251 (1284)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGGSCSEEEEEETBEEEEEE
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHHHcCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred ChhHHhcCCCcHHHHHHHhhcC
Q psy5743 622 SYAHLIKNPNSMFNKLMKYQTM 643 (644)
Q Consensus 622 t~~eLl~~~~~~y~~l~~~q~~ 643 (644)
+|+||+++ +|.|++|++.|..
T Consensus 1252 ~~~~l~~~-~g~y~~l~~~q~~ 1272 (1284)
T 3g5u_A 1252 THQQLLAQ-KGIYFSMVSVQAG 1272 (1284)
T ss_dssp CHHHHHHS-CSHHHHHHHHHC-
T ss_pred CHHHHHhC-CCHHHHHHHHHhh
Confidence 99999987 7999999998853
No 11
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=9.3e-72 Score=576.05 Aligned_cols=277 Identities=37% Similarity=0.594 Sum_probs=251.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCccCCCCCccCCCCCccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCC
Q psy5743 360 FYSELNKGLGACHRLWEIMEREPLISTSGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGS 439 (644)
Q Consensus 360 ~~~~~~~~~~s~~Rl~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGs 439 (644)
....++++.++++|++++++.+++..+.....+.....+.|+++||+|+|++ .+++|+||||+|++||++||||||||
T Consensus 14 ~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~--~~~vL~~isl~i~~Ge~vaivG~sGs 91 (306)
T 3nh6_A 14 LVPRGSHMFIDMENMFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYAD--GRETLQDVSFTVMPGQTLALVGPSGA 91 (306)
T ss_dssp -----CCTTCCHHHHHHHHHHHHSCCCCTTCBCCCCSSCCEEEEEEEEESST--TCEEEEEEEEEECTTCEEEEESSSCH
T ss_pred cchhHHHHHHHHHHHHHHHhCCccccccccccccCCCCCeEEEEEEEEEcCC--CCceeeeeeEEEcCCCEEEEECCCCc
Confidence 4567788888999999999876543322222222234567999999999974 35799999999999999999999999
Q ss_pred cHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHh
Q psy5743 440 GKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEAN 519 (644)
Q Consensus 440 GKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~ 519 (644)
|||||+++|+|+|+|++|+|.+||+|+..++..++|++|+||+|+|++|++||+|||.+|.+. .++++++++++.++
T Consensus 92 GKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~---~~~~~~~~~~~~~~ 168 (306)
T 3nh6_A 92 GKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVT---AGNDEVEAAAQAAG 168 (306)
T ss_dssp HHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTSTT---CCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhccc---CCHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999999999999765 78999999999999
Q ss_pred hccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccC
Q psy5743 520 AYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHR 599 (644)
Q Consensus 520 l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHr 599 (644)
+++++..+|+||+|.+|++|.+|||||||||+|||||+++|+|||||||||+||+++++.|++.|.++.+++|+|+||||
T Consensus 169 l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~ 248 (306)
T 3nh6_A 169 IHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHR 248 (306)
T ss_dssp CHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCS
T ss_pred cHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999889999999999
Q ss_pred chHHhhcCEEEEEeCCeEEEecChhHHhcCCCcHHHHHHHhhc
Q psy5743 600 LSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLMKYQT 642 (644)
Q Consensus 600 l~~i~~aD~Iivl~~G~ive~Gt~~eLl~~~~~~y~~l~~~q~ 642 (644)
++++..||+|++|++|+|++.|+|+||++. ++.|+++++.|.
T Consensus 249 l~~~~~aD~i~vl~~G~iv~~G~~~el~~~-~~~y~~l~~~q~ 290 (306)
T 3nh6_A 249 LSTVVNADQILVIKDGCIVERGRHEALLSR-GGVYADMWQLQQ 290 (306)
T ss_dssp HHHHHTCSEEEEEETTEEEEEECHHHHHHH-TSHHHHHHHHHH
T ss_pred hHHHHcCCEEEEEECCEEEEECCHHHHHhc-ChHHHHHHHHHH
Confidence 999999999999999999999999999987 799999998875
No 12
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=9e-60 Score=474.70 Aligned_cols=241 Identities=46% Similarity=0.764 Sum_probs=226.4
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcc
Q psy5743 398 GEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQ 477 (644)
Q Consensus 398 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~ 477 (644)
.+|+++||+|+|++ .++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++..++...+|++
T Consensus 6 ~~~~~~~l~~~y~~-~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~ 84 (247)
T 2ff7_A 6 HDITFRNIRFRYKP-DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 84 (247)
T ss_dssp EEEEEEEEEEESST-TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHH
T ss_pred CceeEEEEEEEeCC-CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhc
Confidence 46999999999953 13579999999999999999999999999999999999999999999999999999999899999
Q ss_pred eEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHc
Q psy5743 478 IGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALI 557 (644)
Q Consensus 478 i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll 557 (644)
|+||+|+|.+|++|++|||.++.+. .+++++.++++.+++.+++.++|.|+++.+++.+.+||||||||++|||||+
T Consensus 85 i~~v~Q~~~l~~~tv~enl~~~~~~---~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~ 161 (247)
T 2ff7_A 85 VGVVLQDNVLLNRSIIDNISLANPG---MSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALV 161 (247)
T ss_dssp EEEECSSCCCTTSBHHHHHTTTCTT---CCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHT
T ss_pred EEEEeCCCccccccHHHHHhccCCC---CCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999998643 5788899999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEecChhHHhcCCCcHHHHH
Q psy5743 558 KKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKL 637 (644)
Q Consensus 558 ~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eLl~~~~~~y~~l 637 (644)
++|++||||||||+||+.+++.+.+.|+++.+++|+|+|||+++.+..||+|++|++|++++.|+++++++.+.+.|.++
T Consensus 162 ~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~l 241 (247)
T 2ff7_A 162 NNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 241 (247)
T ss_dssp TCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHTSTTCHHHHH
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCchHHHHH
Confidence 99999999999999999999999999998877899999999999998999999999999999999999987646899999
Q ss_pred HHhhc
Q psy5743 638 MKYQT 642 (644)
Q Consensus 638 ~~~q~ 642 (644)
+..|.
T Consensus 242 ~~~~~ 246 (247)
T 2ff7_A 242 YQLQS 246 (247)
T ss_dssp HHHHC
T ss_pred HHhhc
Confidence 88763
No 13
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=1.6e-58 Score=469.22 Aligned_cols=240 Identities=45% Similarity=0.734 Sum_probs=224.4
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcc
Q psy5743 398 GEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQ 477 (644)
Q Consensus 398 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~ 477 (644)
+.|+++||+|+|++...+++|+|+||+|++||++||+||||||||||+++|+|+++| +|+|.+||+++..++...+|++
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence 359999999999753225799999999999999999999999999999999999987 8999999999998888899999
Q ss_pred eEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHc
Q psy5743 478 IGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALI 557 (644)
Q Consensus 478 i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll 557 (644)
|+||+|+|.+|++|++|||.++.+. .+++++.++++.+++.+++..+|+|++|.+++.+.+||||||||++|||||+
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~~---~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~ 171 (260)
T 2ghi_A 95 IGIVPQDTILFNETIKYNILYGKLD---ATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLL 171 (260)
T ss_dssp EEEECSSCCCCSEEHHHHHHTTCTT---CCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHH
T ss_pred EEEEcCCCcccccCHHHHHhccCCC---CCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999998543 5678899999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEecChhHHhcCCCcHHHHH
Q psy5743 558 KKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKL 637 (644)
Q Consensus 558 ~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eLl~~~~~~y~~l 637 (644)
++|+|||||||||+||+++++.+.+.|.++.+++|+|+|||+++.+..||+|++|++|++++.|+++++++. .+.|.++
T Consensus 172 ~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~~ 250 (260)
T 2ghi_A 172 KDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKL-NGEYAEM 250 (260)
T ss_dssp HCCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGSTTCSEEEEEETTEEEEEECHHHHHHH-TSHHHHH
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEECCHHHHHhc-ChHHHHH
Confidence 999999999999999999999999999998778999999999999989999999999999999999999876 5889999
Q ss_pred HHhhc
Q psy5743 638 MKYQT 642 (644)
Q Consensus 638 ~~~q~ 642 (644)
+..|.
T Consensus 251 ~~~~~ 255 (260)
T 2ghi_A 251 WNMQS 255 (260)
T ss_dssp HHHHH
T ss_pred HHhhh
Confidence 88774
No 14
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=8.5e-59 Score=467.17 Aligned_cols=237 Identities=42% Similarity=0.677 Sum_probs=222.7
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
|+++||+|+|++ ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++...+...+|++++
T Consensus 2 l~~~~l~~~y~~--~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (243)
T 1mv5_A 2 LSARHVDFAYDD--SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (243)
T ss_dssp EEEEEEEECSSS--SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred EEEEEEEEEeCC--CCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEE
Confidence 789999999952 357999999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEecCCCCCcccHHHHHhcC-CCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHcc
Q psy5743 480 SVSQEPTLFSGTIYENILYG-VNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIK 558 (644)
Q Consensus 480 ~V~Q~~~Lf~gTIreNI~~g-~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~ 558 (644)
||+|++.+|++|++|||.++ .+. .+++++.++++.+++.+++.++|.|+++.+++.+.+||||||||++|||||++
T Consensus 80 ~v~q~~~l~~~tv~enl~~~~~~~---~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~ 156 (243)
T 1mv5_A 80 FVSQDSAIMAGTIRENLTYGLEGD---YTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLR 156 (243)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTSC---SCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHH
T ss_pred EEcCCCccccccHHHHHhhhccCC---CCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhc
Confidence 99999999999999999998 443 57888999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEecChhHHhcCCCcHHHHHH
Q psy5743 559 KSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLM 638 (644)
Q Consensus 559 ~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eLl~~~~~~y~~l~ 638 (644)
+|++||||||||+||+++++.+.+.|.++.+++|+|+|||+++.+..||+|++|++|++++.|+++++++. .+.|.+++
T Consensus 157 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~-~~~~~~~~ 235 (243)
T 1mv5_A 157 NPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT-HPLYAKYV 235 (243)
T ss_dssp CCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHH-CHHHHHHH
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhc-cHHHHHHH
Confidence 99999999999999999999999999987778999999999999999999999999999999999999876 57888888
Q ss_pred Hhhc
Q psy5743 639 KYQT 642 (644)
Q Consensus 639 ~~q~ 642 (644)
..|.
T Consensus 236 ~~~~ 239 (243)
T 1mv5_A 236 SEQL 239 (243)
T ss_dssp HCCC
T ss_pred Hhhh
Confidence 7664
No 15
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=8.6e-58 Score=466.33 Aligned_cols=241 Identities=39% Similarity=0.690 Sum_probs=222.0
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcc
Q psy5743 398 GEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQ 477 (644)
Q Consensus 398 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~ 477 (644)
+.|+++||+|+|++..+.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++...+...+|++
T Consensus 15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 94 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQ 94 (271)
T ss_dssp CCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHH
T ss_pred ceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhcc
Confidence 46999999999974223579999999999999999999999999999999999999999999999999998888889999
Q ss_pred eEEEecCCCCCcccHHHHHhcCCCCCCCCCH-HHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHH
Q psy5743 478 IGSVSQEPTLFSGTIYENILYGVNDSSSVTK-SDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARAL 556 (644)
Q Consensus 478 i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~-~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAl 556 (644)
|+||+|++.+|++|++|||.++.+. .++ +++.++++..++.++++.+|+|+++.+++.+.+||||||||++|||||
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~~---~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL 171 (271)
T 2ixe_A 95 VAAVGQEPLLFGRSFRENIAYGLTR---TPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARAL 171 (271)
T ss_dssp EEEECSSCCCCSSBHHHHHHTTCSS---CCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHH
T ss_pred EEEEecCCccccccHHHHHhhhccc---CChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999998643 334 678888889999999999999999999999999999999999999999
Q ss_pred ccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHhhcCEEEEEeCCeEEEecChhHHhcCCCcHH
Q psy5743 557 IKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMF 634 (644)
Q Consensus 557 l~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eLl~~~~~~y 634 (644)
+++|+|||||||||+||+.+++.+.+.|.++.+ ++|+|+|||+++.+..||+|++|++|++++.|+++++++. .+.|
T Consensus 172 ~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~-~~~~ 250 (271)
T 2ixe_A 172 IRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMER-GGCY 250 (271)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEEEEECHHHHHHH-TSHH
T ss_pred hcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-cHHH
Confidence 999999999999999999999999999998754 7999999999999988999999999999999999999876 5899
Q ss_pred HHHHHhhc
Q psy5743 635 NKLMKYQT 642 (644)
Q Consensus 635 ~~l~~~q~ 642 (644)
.++++.|.
T Consensus 251 ~~~~~~~~ 258 (271)
T 2ixe_A 251 RSMVEALA 258 (271)
T ss_dssp HHHHHC--
T ss_pred HHHHHHhh
Confidence 99987763
No 16
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=4.5e-56 Score=472.98 Aligned_cols=236 Identities=28% Similarity=0.459 Sum_probs=221.2
Q ss_pred CCCccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHH
Q psy5743 395 SLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYL 474 (644)
Q Consensus 395 ~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~l 474 (644)
+..+.|+++||+++|++ .+.++|+||||+|++||+++|+||||||||||+++|+|+++ ++|+|.+||+|+..+++..+
T Consensus 15 ~~~~~i~~~~l~~~y~~-~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~ 92 (390)
T 3gd7_A 15 PSGGQMTVKDLTAKYTE-GGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQW 92 (390)
T ss_dssp SSSCCEEEEEEEEESSS-SSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHH
T ss_pred CCCCeEEEEEEEEEecC-CCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHH
Confidence 34567999999999974 24679999999999999999999999999999999999998 99999999999999999999
Q ss_pred hcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHH
Q psy5743 475 RSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIAR 554 (644)
Q Consensus 475 r~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLAR 554 (644)
|+.++||+|++.+|.+|++||+.++.. ..+++++++++.+++.+++.+.|.+++|.++++|.+||||||||++|||
T Consensus 93 rr~ig~v~Q~~~lf~~tv~enl~~~~~----~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalAR 168 (390)
T 3gd7_A 93 RKAFGVIPQKVFIFSGTFRKNLDPNAA----HSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLAR 168 (390)
T ss_dssp HHTEEEESCCCCCCSEEHHHHHCTTCC----SCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHH
T ss_pred hCCEEEEcCCcccCccCHHHHhhhccc----cCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHH
Confidence 999999999999999999999986532 5789999999999999999999999999999999999999999999999
Q ss_pred HHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEecChhHHhcCCCcHH
Q psy5743 555 ALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMF 634 (644)
Q Consensus 555 All~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eLl~~~~~~y 634 (644)
||+++|++||||||||+||+.++..+.+.|++..+++|+|+|||+++.+..||+|++|++|+|++.|+++|+++.+...|
T Consensus 169 AL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~g~~~el~~~p~~~~ 248 (390)
T 3gd7_A 169 SVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRF 248 (390)
T ss_dssp HHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGTTCSEEEEEETTEEEEESSHHHHHHCCSBHH
T ss_pred HHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCchH
Confidence 99999999999999999999999999999998877899999999999999999999999999999999999998766665
Q ss_pred HH
Q psy5743 635 NK 636 (644)
Q Consensus 635 ~~ 636 (644)
..
T Consensus 249 va 250 (390)
T 3gd7_A 249 VA 250 (390)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 17
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=5.8e-55 Score=437.14 Aligned_cols=225 Identities=29% Similarity=0.497 Sum_probs=205.6
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
.|+++||+|+|++ .++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| ++
T Consensus 3 ~l~~~~l~~~y~~-~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-------------~i 68 (237)
T 2cbz_A 3 SITVRNATFTWAR-SDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------------SV 68 (237)
T ss_dssp CEEEEEEEEESCT-TSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-------------CE
T ss_pred eEEEEEEEEEeCC-CCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-------------EE
Confidence 3899999999963 245799999999999999999999999999999999999999999999999 69
Q ss_pred EEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHcc
Q psy5743 479 GSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIK 558 (644)
Q Consensus 479 ~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~ 558 (644)
+||+|+|.+|+.|++|||.++.+ .++++..++.+.+++.+++..+|.|++|.+++.+.+||||||||++|||||++
T Consensus 69 ~~v~Q~~~~~~~tv~enl~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~ 144 (237)
T 2cbz_A 69 AYVPQQAWIQNDSLRENILFGCQ----LEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYS 144 (237)
T ss_dssp EEECSSCCCCSEEHHHHHHTTSC----CCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHH
T ss_pred EEEcCCCcCCCcCHHHHhhCccc----cCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999853 23455667777788877888889999999999999999999999999999999
Q ss_pred CCCEEEeecccCCCCHHHHHHHHHHHH---HHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEecChhHHhcCCCcHHH
Q psy5743 559 KSKILLLDEATSALDAENEYLVQSAIE---KLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFN 635 (644)
Q Consensus 559 ~p~IliLDEaTSaLD~~~e~~i~~~l~---~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eLl~~~~~~y~ 635 (644)
+|++||||||||+||+.++..+.+.|. +..+++|+|+|||+++.+..||+|++|++|++++.|+++++++. .+.|.
T Consensus 145 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~-~~~~~ 223 (237)
T 2cbz_A 145 NADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLAR-DGAFA 223 (237)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGGGSSEEEEEETTEEEEEECHHHHHHH-TSHHH
T ss_pred CCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHHhCCEEEEEeCCEEEEeCCHHHHhhc-cHHHH
Confidence 999999999999999999999999984 44468999999999999989999999999999999999999876 68999
Q ss_pred HHHHhhc
Q psy5743 636 KLMKYQT 642 (644)
Q Consensus 636 ~l~~~q~ 642 (644)
+++..|.
T Consensus 224 ~~~~~~~ 230 (237)
T 2cbz_A 224 EFLRTYA 230 (237)
T ss_dssp HHHHHTC
T ss_pred HHHHHHH
Confidence 9998875
No 18
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=2.1e-54 Score=431.02 Aligned_cols=221 Identities=29% Similarity=0.486 Sum_probs=200.3
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
.|+++||+|+|++ .++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++| +|
T Consensus 6 ~l~~~~l~~~y~~-~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-------------~i 71 (229)
T 2pze_A 6 EVVMENVTAFWEE-GGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RI 71 (229)
T ss_dssp EEEEEEEEECSST-TSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-------------CE
T ss_pred eEEEEEEEEEeCC-CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-------------EE
Confidence 5999999999964 246799999999999999999999999999999999999999999999999 69
Q ss_pred EEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHcc
Q psy5743 479 GSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIK 558 (644)
Q Consensus 479 ~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~ 558 (644)
+||+|+|.+|++|++|||.++.+ ..+.+..++++..++.+++..+|.+++|.+++.+.+||||||||++|||||++
T Consensus 72 ~~v~q~~~~~~~tv~enl~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~ 147 (229)
T 2pze_A 72 SFCSQFSWIMPGTIKENIIFGVS----YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYK 147 (229)
T ss_dssp EEECSSCCCCSBCHHHHHHTTSC----CCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHS
T ss_pred EEEecCCcccCCCHHHHhhccCC----cChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999853 34556677788888888999999999999999999999999999999999999
Q ss_pred CCCEEEeecccCCCCHHHHHHHHHHH-HHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEecChhHHhcCCCcHHHHH
Q psy5743 559 KSKILLLDEATSALDAENEYLVQSAI-EKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKL 637 (644)
Q Consensus 559 ~p~IliLDEaTSaLD~~~e~~i~~~l-~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eLl~~~~~~y~~l 637 (644)
+|++||||||||+||+++++.+.+.+ .+..+++|+|+|||+++.+..||+|++|++|++++.|+++++.+. .+.|.++
T Consensus 148 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~-~~~~~~~ 226 (229)
T 2pze_A 148 DADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNL-QPDFSSK 226 (229)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHCSEEEEEETTEEEEEECHHHHHTC---CHHHH
T ss_pred CCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHhCCEEEEEECCEEEEECCHHHHHhc-ChHHHHH
Confidence 99999999999999999999999874 555568999999999999988999999999999999999999875 4566665
Q ss_pred H
Q psy5743 638 M 638 (644)
Q Consensus 638 ~ 638 (644)
+
T Consensus 227 ~ 227 (229)
T 2pze_A 227 L 227 (229)
T ss_dssp H
T ss_pred h
Confidence 4
No 19
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=3.2e-52 Score=437.07 Aligned_cols=227 Identities=30% Similarity=0.461 Sum_probs=195.4
Q ss_pred ccEEEEEEEEEcCCCC-CCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHH--
Q psy5743 398 GEIDFNNIRFSYPSRP-DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYL-- 474 (644)
Q Consensus 398 ~~I~~~~vsf~Y~~~~-~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~l-- 474 (644)
.-|+++||+++|++.. ..++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|+|+..++..++
T Consensus 23 ~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~ 102 (366)
T 3tui_C 23 HMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTK 102 (366)
T ss_dssp CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHH
T ss_pred ceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHH
Confidence 3599999999997422 2468999999999999999999999999999999999999999999999999999987654
Q ss_pred -hcceEEEecCCCCCcc-cHHHHHhcCCCCCCCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHH
Q psy5743 475 -RSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQ 548 (644)
Q Consensus 475 -r~~i~~V~Q~~~Lf~g-TIreNI~~g~~~~~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQ 548 (644)
|+.||||+|++.+|.. |++||+.++... ...+ ++++.++++.+++.++.. ....+|||||||
T Consensus 103 ~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~-~~~~~~~~~~~v~~lL~~vgL~~~~~-----------~~~~~LSGGqkQ 170 (366)
T 3tui_C 103 ARRQIGMIFQHFNLLSSRTVFGNVALPLEL-DNTPKDEVKRRVTELLSLVGLGDKHD-----------SYPSNLSGGQKQ 170 (366)
T ss_dssp HHTTEEEECSSCCCCTTSCHHHHHHHHHHH-SCCCHHHHHHHHHHHHHHHTCGGGTT-----------CCTTTSCHHHHH
T ss_pred HhCcEEEEeCCCccCCCCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHcCCchHhc-----------CChhhCCHHHHH
Confidence 7889999999999976 999999986321 0122 345667777777655433 334689999999
Q ss_pred HHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHhh-cCEEEEEeCCeEEEecChhH
Q psy5743 549 RIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAH 625 (644)
Q Consensus 549 RiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~~-aD~Iivl~~G~ive~Gt~~e 625 (644)
|++|||||+.+|++||||||||+||+.+...|.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|+|++.|+++|
T Consensus 171 RVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~e 250 (366)
T 3tui_C 171 RVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSE 250 (366)
T ss_dssp HHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHH
T ss_pred HHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 99999999999999999999999999999999999988753 8999999999999865 99999999999999999999
Q ss_pred HhcCCCcHHHH
Q psy5743 626 LIKNPNSMFNK 636 (644)
Q Consensus 626 Ll~~~~~~y~~ 636 (644)
++.++...|.+
T Consensus 251 v~~~p~~~~~~ 261 (366)
T 3tui_C 251 VFSHPKTPLAQ 261 (366)
T ss_dssp HHSSCCSHHHH
T ss_pred HHhCCCcHHHH
Confidence 99866555543
No 20
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=1.7e-51 Score=411.54 Aligned_cols=218 Identities=30% Similarity=0.425 Sum_probs=183.0
Q ss_pred EEEEEEEEEcCCCC-CCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHH----
Q psy5743 400 IDFNNIRFSYPSRP-DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYL---- 474 (644)
Q Consensus 400 I~~~~vsf~Y~~~~-~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~l---- 474 (644)
|+++||+|+|++.. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++..++...+
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHh
Confidence 78999999997422 2469999999999999999999999999999999999999999999999999999998765
Q ss_pred hcceEEEecCCCCCcc-cHHHHHhcCCCCC--CCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHH
Q psy5743 475 RSQIGSVSQEPTLFSG-TIYENILYGVNDS--SSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQK 547 (644)
Q Consensus 475 r~~i~~V~Q~~~Lf~g-TIreNI~~g~~~~--~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQk 547 (644)
|+.||||+|+|.+|.. |++||+.++.... ...+ .+++.++++..++.+.. .......||||||
T Consensus 82 ~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----------~~~~~~~LSgGq~ 151 (235)
T 3tif_A 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERF----------ANHKPNQLSGGQQ 151 (235)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGG----------TTCCGGGSCHHHH
T ss_pred hccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhh----------hhCChhhCCHHHH
Confidence 4569999999999987 9999998742100 0122 23344555555543321 1345678999999
Q ss_pred HHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHhhcCEEEEEeCCeEEEecChhH
Q psy5743 548 QRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAH 625 (644)
Q Consensus 548 QRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~e 625 (644)
||++|||||+++|++||||||||+||+.+...+.+.|+++.+ ++|+|+|||+++..+.||+|++|++|+|++.|+.++
T Consensus 152 QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~~~~~~ 231 (235)
T 3tif_A 152 QRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLRG 231 (235)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEECC-
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEcChhh
Confidence 999999999999999999999999999999999999988753 899999999999888999999999999999998877
Q ss_pred Hh
Q psy5743 626 LI 627 (644)
Q Consensus 626 Ll 627 (644)
+-
T Consensus 232 ~~ 233 (235)
T 3tif_A 232 FD 233 (235)
T ss_dssp --
T ss_pred hc
Confidence 53
No 21
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=1.7e-51 Score=419.57 Aligned_cols=217 Identities=27% Similarity=0.485 Sum_probs=187.1
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCC--CCChHHHhc
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIK--ELDPMYLRS 476 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~--~~~~~~lr~ 476 (644)
-|+++||+|+|++ ..++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++. ..+...+|+
T Consensus 7 ~l~i~~ls~~y~~--~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 84 (275)
T 3gfo_A 7 ILKVEELNYNYSD--GTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRE 84 (275)
T ss_dssp EEEEEEEEEECTT--SCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHH
T ss_pred EEEEEEEEEEECC--CCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhC
Confidence 4899999999974 346999999999999999999999999999999999999999999999999994 334567889
Q ss_pred ceEEEecCC--CCCcccHHHHHhcCCCCCCCCCH----HHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHH
Q psy5743 477 QIGSVSQEP--TLFSGTIYENILYGVNDSSSVTK----SDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRI 550 (644)
Q Consensus 477 ~i~~V~Q~~--~Lf~gTIreNI~~g~~~~~~~~~----~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRi 550 (644)
.||||+|+| .+|..|++||+.++... ...+. +++.++++..++.++ ......+||||||||+
T Consensus 85 ~ig~v~Q~~~~~~~~~tv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~~L~~~-----------~~~~~~~LSgGqkQRv 152 (275)
T 3gfo_A 85 SIGIVFQDPDNQLFSASVYQDVSFGAVN-MKLPEDEIRKRVDNALKRTGIEHL-----------KDKPTHCLSFGQKKRV 152 (275)
T ss_dssp SEEEECSSGGGTCCSSBHHHHHHHHHHT-SCCCHHHHHHHHHHHHHHTTCGGG-----------TTSBGGGSCHHHHHHH
T ss_pred cEEEEEcCcccccccCcHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCchh-----------hcCCcccCCHHHHHHH
Confidence 999999997 58899999999987432 11333 345556666665443 2344568999999999
Q ss_pred HHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-C-CceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHHh
Q psy5743 551 AIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-E-GKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHLI 627 (644)
Q Consensus 551 aLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~-~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eLl 627 (644)
+|||||+.+|++||||||||+||+.+.+.+.+.|+++. + ++|+|+|||+++.+. .||+|++|++|++++.|+++|++
T Consensus 153 ~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~ 232 (275)
T 3gfo_A 153 AIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVF 232 (275)
T ss_dssp HHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHT
T ss_pred HHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 99999999999999999999999999999999998875 3 899999999999986 59999999999999999999998
Q ss_pred cC
Q psy5743 628 KN 629 (644)
Q Consensus 628 ~~ 629 (644)
..
T Consensus 233 ~~ 234 (275)
T 3gfo_A 233 AE 234 (275)
T ss_dssp HH
T ss_pred cC
Confidence 64
No 22
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=6.1e-51 Score=408.94 Aligned_cols=220 Identities=28% Similarity=0.440 Sum_probs=187.4
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHH-hcc
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYL-RSQ 477 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~l-r~~ 477 (644)
-|+++||+|+|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++...+...+ |+.
T Consensus 6 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (240)
T 1ji0_A 6 VLEVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred eEEEEeEEEEECC---eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCC
Confidence 3899999999963 479999999999999999999999999999999999999999999999999998887765 445
Q ss_pred eEEEecCCCCCcc-cHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHH
Q psy5743 478 IGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARAL 556 (644)
Q Consensus 478 i~~V~Q~~~Lf~g-TIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAl 556 (644)
++||+|++.+|.+ |++||+.++.... .+.++..+.++ +.++.++ |++...+....+||||||||++|||||
T Consensus 83 i~~v~q~~~l~~~ltv~enl~~~~~~~--~~~~~~~~~~~-----~~l~~~~-~l~~~~~~~~~~LSgGq~qrv~lAraL 154 (240)
T 1ji0_A 83 IALVPEGRRIFPELTVYENLMMGAYNR--KDKEGIKRDLE-----WIFSLFP-RLKERLKQLGGTLSGGEQQMLAIGRAL 154 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHGGGTTC--CCSSHHHHHHH-----HHHHHCH-HHHTTTTSBSSSSCHHHHHHHHHHHHH
T ss_pred EEEEecCCccCCCCcHHHHHHHhhhcC--CCHHHHHHHHH-----HHHHHcc-cHhhHhcCChhhCCHHHHHHHHHHHHH
Confidence 9999999999987 9999999974111 12223222222 1233333 344556677789999999999999999
Q ss_pred ccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhHHhcC
Q psy5743 557 IKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHLIKN 629 (644)
Q Consensus 557 l~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~eLl~~ 629 (644)
+++|++||||||||+||+.+.+.+.+.|+++. +++|+|+|||+++.+ +.||+|++|++|++++.|+++++.+.
T Consensus 155 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 229 (240)
T 1ji0_A 155 MSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229 (240)
T ss_dssp TTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred HcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHhcC
Confidence 99999999999999999999999999998875 589999999999876 67999999999999999999999753
No 23
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=4e-51 Score=419.93 Aligned_cols=238 Identities=29% Similarity=0.462 Sum_probs=188.3
Q ss_pred HHHHHHhcCCCccCCCCCccCCCCCccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 373 RLWEIMEREPLISTSGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 373 Rl~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
|+.++++.+.+..... . .....+.|+++||+|.| .++|+|+||+|++||++||+||||||||||+++|+|++
T Consensus 17 ~~~~~~~~~~~~~~~~-~--~~~~~~~l~~~~l~~~~-----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 17 GFGELFEKAKQNNNNR-K--TSNGDDSLSFSNFSLLG-----TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp HHHHHHHHCC--------------------------C-----CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred HHHHHhcccccccccc-c--ccCCCceEEEEEEEEcC-----ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 6777776554322111 1 11223469999999964 36899999999999999999999999999999999999
Q ss_pred CCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCcc
Q psy5743 453 DPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFD 532 (644)
Q Consensus 453 ~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~ 532 (644)
+|++|+|.++| +++||+|++.+|++|++|||. +.. ..+.++.++++..++.+++..+|.+++
T Consensus 89 ~p~~G~I~~~g-------------~i~~v~Q~~~l~~~tv~enl~-~~~----~~~~~~~~~~~~~~l~~~l~~~~~~~~ 150 (290)
T 2bbs_A 89 EPSEGKIKHSG-------------RISFCSQNSWIMPGTIKENII-GVS----YDEYRYRSVIKACQLEEDISKFAEKDN 150 (290)
T ss_dssp CEEEEEEECCS-------------CEEEECSSCCCCSSBHHHHHH-TTC----CCHHHHHHHHHHTTCHHHHHTSTTGGG
T ss_pred CCCCcEEEECC-------------EEEEEeCCCccCcccHHHHhh-Ccc----cchHHHHHHHHHhChHHHHHhcccccc
Confidence 99999999999 699999999999999999998 532 345566677888888888999999999
Q ss_pred ccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHH-HHHcCCceEEEEccCchHHhhcCEEEE
Q psy5743 533 TIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAI-EKLIEGKTVLTIAHRLSTIRKSNQICV 611 (644)
Q Consensus 533 T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l-~~~~~~~TvI~IaHrl~~i~~aD~Iiv 611 (644)
|.+++.+.+||||||||++|||||+++|++||||||||+||+.++..+.+.+ .++.+++|+|+|||+++.+..||+|++
T Consensus 151 ~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~~~d~i~~ 230 (290)
T 2bbs_A 151 IVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILI 230 (290)
T ss_dssp CBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHSSEEEE
T ss_pred chhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHcCCEEEE
Confidence 9999999999999999999999999999999999999999999999999864 455568999999999999999999999
Q ss_pred EeCCeEEEecChhHHhcCCCcHHHHH
Q psy5743 612 LDKGKIVEIGSYAHLIKNPNSMFNKL 637 (644)
Q Consensus 612 l~~G~ive~Gt~~eLl~~~~~~y~~l 637 (644)
|++|++++.|+++++++. ...|.+.
T Consensus 231 l~~G~i~~~g~~~~l~~~-~~~~~~~ 255 (290)
T 2bbs_A 231 LHEGSSYFYGTFSELQNL-RPDFSSK 255 (290)
T ss_dssp EETTEEEEEECHHHHHHH-CHHHHHH
T ss_pred EECCeEEEeCCHHHHhhh-cHHHHHH
Confidence 999999999999999764 3455443
No 24
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=2.5e-50 Score=409.86 Aligned_cols=216 Identities=27% Similarity=0.426 Sum_probs=192.0
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
-|+++|++++|++ .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++...+...+++.+
T Consensus 11 ~l~~~~l~~~~~~---~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i 87 (266)
T 4g1u_C 11 LLEASHLHYHVQQ---QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTR 87 (266)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHE
T ss_pred eEEEEeEEEEeCC---eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheE
Confidence 4899999999963 5799999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCC-CcccHHHHHhcCCCCC-CCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHH
Q psy5743 479 GSVSQEPTL-FSGTIYENILYGVNDS-SSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARAL 556 (644)
Q Consensus 479 ~~V~Q~~~L-f~gTIreNI~~g~~~~-~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAl 556 (644)
+||+|++.+ |+.|++||+.++.... ....++++.++++..++.++..+ ...+||||||||++|||||
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgGq~QRv~iAraL 156 (266)
T 4g1u_C 88 AVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQR-----------DYRVLSGGEQQRVQLARVL 156 (266)
T ss_dssp EEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTS-----------BGGGCCHHHHHHHHHHHHH
T ss_pred EEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcC-----------CcccCCHHHHHHHHHHHHH
Confidence 999999987 6789999999985321 12345677888888877654322 2347999999999999999
Q ss_pred cc------CCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHHh
Q psy5743 557 IK------KSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHLI 627 (644)
Q Consensus 557 l~------~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eLl 627 (644)
++ +|++||||||||+||+.+...+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|++++.|++++++
T Consensus 157 ~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 236 (266)
T 4g1u_C 157 AQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVL 236 (266)
T ss_dssp HHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHC
T ss_pred hcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 99 9999999999999999999999999988753 469999999999986 69999999999999999999997
Q ss_pred c
Q psy5743 628 K 628 (644)
Q Consensus 628 ~ 628 (644)
.
T Consensus 237 ~ 237 (266)
T 4g1u_C 237 N 237 (266)
T ss_dssp C
T ss_pred C
Confidence 5
No 25
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=2.9e-50 Score=408.03 Aligned_cols=221 Identities=33% Similarity=0.463 Sum_probs=189.2
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCC--CCChHHHhc
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIK--ELDPMYLRS 476 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~--~~~~~~lr~ 476 (644)
-|+++||+|+|++ .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++. ..+...+|+
T Consensus 24 ~l~i~~l~~~y~~---~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 100 (263)
T 2olj_A 24 MIDVHQLKKSFGS---LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVRE 100 (263)
T ss_dssp SEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHH
T ss_pred eEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhC
Confidence 4999999999953 46999999999999999999999999999999999999999999999999985 345567788
Q ss_pred ceEEEecCCCCCcc-cHHHHHhcCC-CCCCCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHH
Q psy5743 477 QIGSVSQEPTLFSG-TIYENILYGV-NDSSSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRI 550 (644)
Q Consensus 477 ~i~~V~Q~~~Lf~g-TIreNI~~g~-~~~~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRi 550 (644)
+|+||+|++.+|.. |++||+.++. .. ...+ ++++.++++..++.++. .....+||||||||+
T Consensus 101 ~i~~v~Q~~~l~~~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~LSgGqkQRv 168 (263)
T 2olj_A 101 EVGMVFQRFNLFPHMTVLNNITLAPMKV-RKWPREKAEAKAMELLDKVGLKDKA-----------HAYPDSLSGGQAQRV 168 (263)
T ss_dssp HEEEECSSCCCCTTSCHHHHHHHHHHHT-SCCCHHHHHHHHHHHHHHTTCGGGT-----------TSCGGGSCHHHHHHH
T ss_pred cEEEEeCCCcCCCCCCHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHCCCchHh-----------cCChhhCCHHHHHHH
Confidence 99999999999987 9999999852 10 0122 34556667776665432 334568999999999
Q ss_pred HHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHh-hcCEEEEEeCCeEEEecChhHHhc
Q psy5743 551 AIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHLIK 628 (644)
Q Consensus 551 aLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ive~Gt~~eLl~ 628 (644)
+|||||+.+|++||||||||+||+.+.+.+.+.|+++. +++|+|+|||+++.+. .||+|++|++|++++.|+++++++
T Consensus 169 ~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 248 (263)
T 2olj_A 169 AIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFD 248 (263)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999999999998874 4789999999999986 599999999999999999999987
Q ss_pred CCCcHH
Q psy5743 629 NPNSMF 634 (644)
Q Consensus 629 ~~~~~y 634 (644)
.+...+
T Consensus 249 ~~~~~~ 254 (263)
T 2olj_A 249 RPQHER 254 (263)
T ss_dssp SCCSHH
T ss_pred CcccHH
Confidence 543344
No 26
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=8.4e-50 Score=418.77 Aligned_cols=224 Identities=28% Similarity=0.464 Sum_probs=190.7
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCC--CChHHHhc
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKE--LDPMYLRS 476 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~--~~~~~lr~ 476 (644)
.|+++||+++|++ .++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++.. .+....++
T Consensus 4 ~l~i~~ls~~y~~---~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r 80 (359)
T 3fvq_A 4 ALHIGHLSKSFQN---TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRER 80 (359)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGS
T ss_pred EEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhC
Confidence 4899999999953 579999999999999999999999999999999999999999999999999932 22334577
Q ss_pred ceEEEecCCCCCcc-cHHHHHhcCCCCCCC---CCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHH
Q psy5743 477 QIGSVSQEPTLFSG-TIYENILYGVNDSSS---VTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAI 552 (644)
Q Consensus 477 ~i~~V~Q~~~Lf~g-TIreNI~~g~~~~~~---~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaL 552 (644)
.||||+|++.+|.. |++|||.|+...... ..++++.++++..++.++..+.| .+||||||||++|
T Consensus 81 ~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~-----------~~LSGGq~QRVal 149 (359)
T 3fvq_A 81 RLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYP-----------HELSGGQQQRAAL 149 (359)
T ss_dssp CCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCG-----------GGSCHHHHHHHHH
T ss_pred CEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCCh-----------hhCCHHHHHHHHH
Confidence 89999999999974 999999998532111 12356777888888766544433 5799999999999
Q ss_pred HHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc--CCceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhHHhcC
Q psy5743 553 ARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI--EGKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHLIKN 629 (644)
Q Consensus 553 ARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~--~~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~eLl~~ 629 (644)
||||+.+|++||||||||+||+.+...+.+.|.++. .++|+|+|||+++.+ ..||+|++|++|+|++.|+++|++.+
T Consensus 150 ArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~~ 229 (359)
T 3fvq_A 150 ARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQ 229 (359)
T ss_dssp HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHhC
Confidence 999999999999999999999999999998776653 389999999999987 56999999999999999999999987
Q ss_pred CCcHHHH
Q psy5743 630 PNSMFNK 636 (644)
Q Consensus 630 ~~~~y~~ 636 (644)
+...|..
T Consensus 230 p~~~~~a 236 (359)
T 3fvq_A 230 PADLDAA 236 (359)
T ss_dssp CSCHHHH
T ss_pred cccHHHH
Confidence 6555543
No 27
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=7.3e-50 Score=403.81 Aligned_cols=215 Identities=25% Similarity=0.394 Sum_probs=188.3
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcc
Q psy5743 398 GEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQ 477 (644)
Q Consensus 398 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~ 477 (644)
+.|+++||+++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ....+|++
T Consensus 14 ~~l~i~~l~~~y~~---~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~-~~~~~~~~ 89 (256)
T 1vpl_A 14 GAVVVKDLRKRIGK---KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKL 89 (256)
T ss_dssp CCEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTT
T ss_pred CeEEEEEEEEEECC---EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc-cHHHHhhc
Confidence 46999999999953 579999999999999999999999999999999999999999999999999976 56778899
Q ss_pred eEEEecCCCCCcc-cHHHHHhcCCCCCCCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHH
Q psy5743 478 IGSVSQEPTLFSG-TIYENILYGVNDSSSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAI 552 (644)
Q Consensus 478 i~~V~Q~~~Lf~g-TIreNI~~g~~~~~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaL 552 (644)
++||+|++.+|.+ |++||+.++... ...+ ++++.++++..++.++.. ....+||||||||++|
T Consensus 90 i~~v~q~~~l~~~ltv~enl~~~~~~-~~~~~~~~~~~~~~~l~~~gL~~~~~-----------~~~~~LSgGq~qRv~l 157 (256)
T 1vpl_A 90 ISYLPEEAGAYRNMQGIEYLRFVAGF-YASSSSEIEEMVERATEIAGLGEKIK-----------DRVSTYSKGMVRKLLI 157 (256)
T ss_dssp EEEECTTCCCCTTSBHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHCCGGGGG-----------SBGGGCCHHHHHHHHH
T ss_pred EEEEcCCCCCCCCCcHHHHHHHHHHH-cCCChHHHHHHHHHHHHHCCCchHhc-----------CChhhCCHHHHHHHHH
Confidence 9999999999987 999999885310 0022 245667777777655432 3346899999999999
Q ss_pred HHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhh-cCEEEEEeCCeEEEecChhHHhc
Q psy5743 553 ARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLIK 628 (644)
Q Consensus 553 ARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~~-aD~Iivl~~G~ive~Gt~~eLl~ 628 (644)
||||+++|++||||||||+||+.+...+.+.|.++. +++|+|+|||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 158 AraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 158 ARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKE 235 (256)
T ss_dssp HHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred HHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHHH
Confidence 999999999999999999999999999999998875 47999999999999876 99999999999999999999864
No 28
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=5.9e-50 Score=406.64 Aligned_cols=218 Identities=33% Similarity=0.483 Sum_probs=186.5
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCC----------
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKE---------- 468 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~---------- 468 (644)
-|+++|++++|++ .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++..
T Consensus 6 ~l~i~~l~~~y~~---~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (262)
T 1b0u_A 6 KLHVIDLHKRYGG---HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 82 (262)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred eEEEeeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccc
Confidence 4999999999953 479999999999999999999999999999999999999999999999999862
Q ss_pred CCh---HHHhcceEEEecCCCCCcc-cHHHHHhcCC-CCCCCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCC
Q psy5743 469 LDP---MYLRSQIGSVSQEPTLFSG-TIYENILYGV-NDSSSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERG 539 (644)
Q Consensus 469 ~~~---~~lr~~i~~V~Q~~~Lf~g-TIreNI~~g~-~~~~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G 539 (644)
++. ..+|+.++||+|++.+|.. |++||+.++. .. ...+ ++++.++++..++.+++ .....
T Consensus 83 ~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~-~~~~~~~~~~~~~~~l~~~~L~~~~----------~~~~~ 151 (262)
T 1b0u_A 83 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQV-LGLSKHDARERALKYLAKVGIDERA----------QGKYP 151 (262)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT-TCCCHHHHHHHHHHHHHHTTCCHHH----------HTSCG
T ss_pred cChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHh-cCCCHHHHHHHHHHHHHHcCCCchh----------hcCCc
Confidence 444 3568889999999999987 9999999852 10 0122 34566677777665441 22344
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHh-hcCEEEEEeCCeE
Q psy5743 540 IMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIR-KSNQICVLDKGKI 617 (644)
Q Consensus 540 ~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~-~aD~Iivl~~G~i 617 (644)
.+||||||||++|||||+.+|++||||||||+||+.+.+.+.+.|+++. +++|+|+|||+++.+. .||+|++|++|++
T Consensus 152 ~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i 231 (262)
T 1b0u_A 152 VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKI 231 (262)
T ss_dssp GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEE
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 6799999999999999999999999999999999999999999998874 3789999999999985 6999999999999
Q ss_pred EEecChhHHhcCC
Q psy5743 618 VEIGSYAHLIKNP 630 (644)
Q Consensus 618 ve~Gt~~eLl~~~ 630 (644)
++.|+++++++.+
T Consensus 232 ~~~g~~~~~~~~~ 244 (262)
T 1b0u_A 232 EEEGDPEQVFGNP 244 (262)
T ss_dssp EEEECHHHHHHSC
T ss_pred EEeCCHHHHHhCc
Confidence 9999999998753
No 29
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=9.5e-50 Score=406.26 Aligned_cols=216 Identities=30% Similarity=0.470 Sum_probs=188.9
Q ss_pred EEEEEEEEEcCCCCC--CccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcc
Q psy5743 400 IDFNNIRFSYPSRPD--AVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQ 477 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~--~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~ 477 (644)
|+++|++++|+.+.. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... .+|++
T Consensus 3 l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~---~~~~~ 79 (266)
T 2yz2_A 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY---EIRRN 79 (266)
T ss_dssp EEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH---HHGGG
T ss_pred EEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH---Hhhhh
Confidence 789999999962111 4699999999999999999999999999999999999999999999999998642 67889
Q ss_pred eEEEecCC--CCCcccHHHHHhcCCCCC--CCCCHHHHHHHHHHHhhc--cchhhhhcCccccccCCCCCCChhHHHHHH
Q psy5743 478 IGSVSQEP--TLFSGTIYENILYGVNDS--SSVTKSDIIHAAKEANAY--GFVIDFKNGFDTIVGERGIMLSGGQKQRIA 551 (644)
Q Consensus 478 i~~V~Q~~--~Lf~gTIreNI~~g~~~~--~~~~~~~i~~a~~~a~l~--~~i~~lp~Gl~T~ige~G~~LSGGQkQRia 551 (644)
++||+|+| .+++.|++||+.++.... ....++++.++++..++. ++..+.| .+||||||||++
T Consensus 80 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----------~~LSgGq~qRv~ 148 (266)
T 2yz2_A 80 IGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVP-----------FFLSGGEKRRVA 148 (266)
T ss_dssp EEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCG-----------GGSCHHHHHHHH
T ss_pred EEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCCh-----------hhCCHHHHHHHH
Confidence 99999996 578899999999974210 113357788899998887 5544433 579999999999
Q ss_pred HHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhh-cCEEEEEeCCeEEEecChhHHhcC
Q psy5743 552 IARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLIKN 629 (644)
Q Consensus 552 LARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~~-aD~Iivl~~G~ive~Gt~~eLl~~ 629 (644)
|||||+++|++||||||||+||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|+++++++.
T Consensus 149 lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 228 (266)
T 2yz2_A 149 IASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 228 (266)
T ss_dssp HHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred HHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999998874 48999999999999875 999999999999999999998764
No 30
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=7e-50 Score=422.07 Aligned_cols=221 Identities=27% Similarity=0.458 Sum_probs=192.1
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
.|+++||+++|++ ..+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++...++. ++.|
T Consensus 3 ~l~~~~l~~~yg~---~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~--~r~i 77 (381)
T 3rlf_A 3 SVQLQNVTKAWGE---VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGV 77 (381)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGG--GSCE
T ss_pred EEEEEeEEEEECC---EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHH--HCCE
Confidence 4899999999963 5799999999999999999999999999999999999999999999999999988775 4689
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCCCCCCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHH
Q psy5743 479 GSVSQEPTLFSG-TIYENILYGVNDSSSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIA 553 (644)
Q Consensus 479 ~~V~Q~~~Lf~g-TIreNI~~g~~~~~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLA 553 (644)
|||+|++.+|.. |++|||.|+... ...+ ++++.++++..++.++..+. ..+||||||||++||
T Consensus 78 g~VfQ~~~l~p~ltV~eni~~~~~~-~~~~~~~~~~~v~~~l~~~~L~~~~~r~-----------p~~LSGGqrQRVaiA 145 (381)
T 3rlf_A 78 GMVFQSYALYPHLSVAENMSFGLKL-AGAKKEVINQRVNQVAEVLQLAHLLDRK-----------PKALSGGQRQRVAIG 145 (381)
T ss_dssp EEECTTCCCCTTSCHHHHHTHHHHH-TTCCHHHHHHHHHHHHHHTTCGGGTTCC-----------GGGSCHHHHHHHHHH
T ss_pred EEEecCCcCCCCCCHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCchhhcCC-----------hhHCCHHHHHHHHHH
Confidence 999999999975 999999997421 1123 34566677777765544333 357999999999999
Q ss_pred HHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhHHhcCC
Q psy5743 554 RALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHLIKNP 630 (644)
Q Consensus 554 RAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~eLl~~~ 630 (644)
|||..+|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+ ..||+|++|++|+|++.|+++|+...+
T Consensus 146 rAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~~p 225 (381)
T 3rlf_A 146 RTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYP 225 (381)
T ss_dssp HHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCC
T ss_pred HHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCC
Confidence 999999999999999999999999999999988753 79999999999887 569999999999999999999999876
Q ss_pred CcHHHH
Q psy5743 631 NSMFNK 636 (644)
Q Consensus 631 ~~~y~~ 636 (644)
...|..
T Consensus 226 ~~~~v~ 231 (381)
T 3rlf_A 226 ADRFVA 231 (381)
T ss_dssp SBHHHH
T ss_pred ccHHHH
Confidence 666644
No 31
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=4.8e-50 Score=398.23 Aligned_cols=211 Identities=29% Similarity=0.368 Sum_probs=181.1
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHH---Hh
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMY---LR 475 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~---lr 475 (644)
-|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... +|
T Consensus 4 ~l~~~~l~~~y~~---~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (224)
T 2pcj_A 4 ILRAENIKKVIRG---YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLR 80 (224)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHH
T ss_pred EEEEEeEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHH
Confidence 3899999999963 57999999999999999999999999999999999999999999999999998887653 34
Q ss_pred -cceEEEecCCCCCc-ccHHHHHhcCCCCCC---CCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHH
Q psy5743 476 -SQIGSVSQEPTLFS-GTIYENILYGVNDSS---SVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRI 550 (644)
Q Consensus 476 -~~i~~V~Q~~~Lf~-gTIreNI~~g~~~~~---~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRi 550 (644)
++++||+|++.+|. .|++||+.++..... ...++++.++++..++.++. .....+||||||||+
T Consensus 81 ~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGq~qrv 149 (224)
T 2pcj_A 81 NRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKL-----------SRKPYELSGGEQQRV 149 (224)
T ss_dssp HHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCT-----------TCCGGGSCHHHHHHH
T ss_pred hCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhh-----------hCChhhCCHHHHHHH
Confidence 78999999999987 499999998632100 01234566666666665433 233468999999999
Q ss_pred HHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhhcCEEEEEeCCeEEEecCh
Q psy5743 551 AIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSY 623 (644)
Q Consensus 551 aLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~ 623 (644)
+|||||+.+|++||||||||+||+.+.+.+.+.|+++. +++|+|+|||+++.+..||+|++|++|++++.|+.
T Consensus 150 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~~g~~ 223 (224)
T 2pcj_A 150 AIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGEITR 223 (224)
T ss_dssp HHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHTTSSEEEEEETTEEEEEEEC
T ss_pred HHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEeee
Confidence 99999999999999999999999999999999998874 47999999999999888999999999999999873
No 32
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=1.2e-49 Score=403.65 Aligned_cols=213 Identities=24% Similarity=0.361 Sum_probs=182.6
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChH-HHhcc
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPM-YLRSQ 477 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~-~lr~~ 477 (644)
-|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+.. .+|+.
T Consensus 7 ~l~i~~l~~~y~~---~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 83 (257)
T 1g6h_A 7 ILRTENIVKYFGE---FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 83 (257)
T ss_dssp EEEEEEEEEEETT---EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred EEEEeeeEEEECC---EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 4899999999963 4699999999999999999999999999999999999999999999999999887753 46778
Q ss_pred eEEEecCCCCCc-ccHHHHHhcCCCC-CCC-----------CC----HHHHHHHHHHHhhccchhhhhcCccccccCCCC
Q psy5743 478 IGSVSQEPTLFS-GTIYENILYGVND-SSS-----------VT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGI 540 (644)
Q Consensus 478 i~~V~Q~~~Lf~-gTIreNI~~g~~~-~~~-----------~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~ 540 (644)
++||+|++.+|. .|++||+.++... ... .+ .+++.++++..+ ++........
T Consensus 84 i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~ 152 (257)
T 1g6h_A 84 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLK-----------LSHLYDRKAG 152 (257)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTT-----------CGGGTTSBGG
T ss_pred EEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcC-----------CchhhCCCch
Confidence 999999999886 5999999987421 000 11 123444444444 3334455667
Q ss_pred CCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC-CceEEEEccCchHHh-hcCEEEEEeCCeEE
Q psy5743 541 MLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE-GKTVLTIAHRLSTIR-KSNQICVLDKGKIV 618 (644)
Q Consensus 541 ~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~-~~TvI~IaHrl~~i~-~aD~Iivl~~G~iv 618 (644)
+||||||||++|||||+.+|++||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|+++
T Consensus 153 ~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~ 232 (257)
T 1g6h_A 153 ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQII 232 (257)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEE
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 8999999999999999999999999999999999999999999988753 799999999999875 69999999999999
Q ss_pred EecChhH
Q psy5743 619 EIGSYAH 625 (644)
Q Consensus 619 e~Gt~~e 625 (644)
+.|++++
T Consensus 233 ~~g~~~~ 239 (257)
T 1g6h_A 233 AEGRGEE 239 (257)
T ss_dssp EEEESHH
T ss_pred EEeCHHH
Confidence 9999999
No 33
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=5.9e-49 Score=413.80 Aligned_cols=220 Identities=29% Similarity=0.541 Sum_probs=192.8
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++...++. ++.|
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 77 (359)
T 2yyz_A 3 SIRVVNLKKYFGK---VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK--YREV 77 (359)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTE
T ss_pred EEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChh--hCcE
Confidence 3899999999953 4699999999999999999999999999999999999999999999999999887754 6789
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCCCCCCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHH
Q psy5743 479 GSVSQEPTLFSG-TIYENILYGVNDSSSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIA 553 (644)
Q Consensus 479 ~~V~Q~~~Lf~g-TIreNI~~g~~~~~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLA 553 (644)
|||+|++.+|.. |++|||.|+.... ..+ ++++.++++..++.++..+.| .+||||||||++||
T Consensus 78 g~v~Q~~~l~~~ltv~eni~~~~~~~-~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----------~~LSgGq~QRvalA 145 (359)
T 2yyz_A 78 GMVFQNYALYPHMTVFENIAFPLRAR-RISKDEVEKRVVEIARKLLIDNLLDRKP-----------TQLSGGQQQRVALA 145 (359)
T ss_dssp EEECSSCCCCTTSCHHHHHHGGGSSS-CSHHHHTTHHHHHHHHHTTCGGGTTSCG-----------GGSCHHHHHHHHHH
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHcCCchHhcCCh-----------hhCCHHHHHHHHHH
Confidence 999999999975 9999999974321 112 356778888888776655444 57999999999999
Q ss_pred HHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhHHhcCC
Q psy5743 554 RALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHLIKNP 630 (644)
Q Consensus 554 RAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~eLl~~~ 630 (644)
|||+++|++||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+ ..||+|++|++|+|++.|+++|+++++
T Consensus 146 rAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p 225 (359)
T 2yyz_A 146 RALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSP 225 (359)
T ss_dssp HHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCc
Confidence 999999999999999999999999999999988753 78999999999987 579999999999999999999999865
Q ss_pred CcHHH
Q psy5743 631 NSMFN 635 (644)
Q Consensus 631 ~~~y~ 635 (644)
...|.
T Consensus 226 ~~~~~ 230 (359)
T 2yyz_A 226 KNMFV 230 (359)
T ss_dssp SBHHH
T ss_pred ccHHH
Confidence 55553
No 34
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=3e-49 Score=414.96 Aligned_cols=221 Identities=28% Similarity=0.532 Sum_probs=191.3
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcc
Q psy5743 398 GEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQ 477 (644)
Q Consensus 398 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~ 477 (644)
..|+++|++++|++ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++...++ .++.
T Consensus 13 ~~l~~~~l~~~y~g--~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~ 88 (355)
T 1z47_A 13 MTIEFVGVEKIYPG--GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP--QKRN 88 (355)
T ss_dssp EEEEEEEEEECCTT--STTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG--GGSS
T ss_pred ceEEEEEEEEEEcC--CCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCCh--hhCc
Confidence 35999999999942 3469999999999999999999999999999999999999999999999999987654 4788
Q ss_pred eEEEecCCCCCcc-cHHHHHhcCCCCCCCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHH
Q psy5743 478 IGSVSQEPTLFSG-TIYENILYGVNDSSSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAI 552 (644)
Q Consensus 478 i~~V~Q~~~Lf~g-TIreNI~~g~~~~~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaL 552 (644)
||||+|++.+|.. |++|||.|+... ...+ ++++.++++..++.++..+.| .+||||||||++|
T Consensus 89 ig~v~Q~~~l~~~ltv~eni~~~l~~-~~~~~~~~~~~v~~~l~~~gL~~~~~r~~-----------~~LSGGq~QRval 156 (355)
T 1z47_A 89 VGLVFQNYALFQHMTVYDNVSFGLRE-KRVPKDEMDARVRELLRFMRLESYANRFP-----------HELSGGQQQRVAL 156 (355)
T ss_dssp EEEECGGGCCCTTSCHHHHHHHHHHH-TTCCHHHHHHHHHHHHHHTTCGGGTTSCG-----------GGSCHHHHHHHHH
T ss_pred EEEEecCcccCCCCCHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHcCChhHhcCCc-----------ccCCHHHHHHHHH
Confidence 9999999999985 999999986321 0122 356777888888766544444 5899999999999
Q ss_pred HHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhHHhcC
Q psy5743 553 ARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHLIKN 629 (644)
Q Consensus 553 ARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~eLl~~ 629 (644)
||||+.+|++||||||||+||+.+...+.+.|+++.+ ++|+|+|||+++.+ ..||+|++|++|+|++.|+++|++++
T Consensus 157 ArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~ 236 (355)
T 1z47_A 157 ARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEK 236 (355)
T ss_dssp HHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999999999988753 78999999999987 55999999999999999999999876
Q ss_pred CCcHH
Q psy5743 630 PNSMF 634 (644)
Q Consensus 630 ~~~~y 634 (644)
+...|
T Consensus 237 p~~~~ 241 (355)
T 1z47_A 237 PGTLF 241 (355)
T ss_dssp CSSHH
T ss_pred ccchH
Confidence 54444
No 35
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=3.3e-49 Score=416.19 Aligned_cols=220 Identities=34% Similarity=0.544 Sum_probs=191.5
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++...++. ++.|
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 77 (362)
T 2it1_A 3 EIKLENIVKKFGN---FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRNV 77 (362)
T ss_dssp CEEEEEEEEESSS---SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTE
T ss_pred EEEEEeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHh--HCcE
Confidence 3899999999953 4699999999999999999999999999999999999999999999999999887764 5789
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCCCCCCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHH
Q psy5743 479 GSVSQEPTLFSG-TIYENILYGVNDSSSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIA 553 (644)
Q Consensus 479 ~~V~Q~~~Lf~g-TIreNI~~g~~~~~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLA 553 (644)
|||+|++.+|.. |++|||.|+... ...+ ++++.++++..++.++..+.| .+||||||||++||
T Consensus 78 g~v~Q~~~l~~~ltv~eni~~~~~~-~~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----------~~LSGGq~QRvalA 145 (362)
T 2it1_A 78 GLVFQNWALYPHMTVYKNIAFPLEL-RKAPREEIDKKVREVAKMLHIDKLLNRYP-----------WQLSGGQQQRVAIA 145 (362)
T ss_dssp EEECTTCCCCTTSCHHHHHHHHHHH-TTCCHHHHHHHHHHHHHHTTCTTCTTCCG-----------GGSCHHHHHHHHHH
T ss_pred EEEecCcccCCCCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHcCCchHhhCCh-----------hhCCHHHHHHHHHH
Confidence 999999999975 999999986321 0122 345777888888766654444 57999999999999
Q ss_pred HHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhHHhcCC
Q psy5743 554 RALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHLIKNP 630 (644)
Q Consensus 554 RAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~eLl~~~ 630 (644)
|||+++|++||||||||+||+.+...+.+.|+++.+ ++|+|+|||+++.+ ..||+|++|++|+|++.|+++|+++++
T Consensus 146 rAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~~p 225 (362)
T 2it1_A 146 RALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYKP 225 (362)
T ss_dssp HHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 999999999999999999999999999999988753 79999999999886 569999999999999999999998765
Q ss_pred CcHHH
Q psy5743 631 NSMFN 635 (644)
Q Consensus 631 ~~~y~ 635 (644)
...|.
T Consensus 226 ~~~~~ 230 (362)
T 2it1_A 226 KYKFV 230 (362)
T ss_dssp SBHHH
T ss_pred cchHH
Confidence 55543
No 36
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=3.6e-49 Score=395.20 Aligned_cols=212 Identities=25% Similarity=0.427 Sum_probs=182.3
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
|+++|++++|++ +|+|+||++++ |+++|+||||||||||+++|+|+++|++|+|.++|+++.... .+|++++
T Consensus 2 l~~~~l~~~y~~-----~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~i~ 73 (240)
T 2onk_A 2 FLKVRAEKRLGN-----FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP--PERRGIG 73 (240)
T ss_dssp CEEEEEEEEETT-----EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--TTTSCCB
T ss_pred EEEEEEEEEeCC-----EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCc--hhhCcEE
Confidence 689999999952 49999999999 999999999999999999999999999999999999997643 3578899
Q ss_pred EEecCCCCCcc-cHHHHHhcCCCCCC-CCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHc
Q psy5743 480 SVSQEPTLFSG-TIYENILYGVNDSS-SVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALI 557 (644)
Q Consensus 480 ~V~Q~~~Lf~g-TIreNI~~g~~~~~-~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll 557 (644)
||+|++.+|.. |++||+.++..... ..+++++.++++..++.++.. ....+||||||||++|||||+
T Consensus 74 ~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgGqkqRv~lAral~ 142 (240)
T 2onk_A 74 FVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLD-----------RKPARLSGGERQRVALARALV 142 (240)
T ss_dssp CCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTT-----------CCGGGSCHHHHHHHHHHHHHT
T ss_pred EEcCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhc-----------CChhhCCHHHHHHHHHHHHHH
Confidence 99999999987 99999999743100 011345666666666654432 234589999999999999999
Q ss_pred cCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhHHhcCC
Q psy5743 558 KKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHLIKNP 630 (644)
Q Consensus 558 ~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~eLl~~~ 630 (644)
++|++||||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+ ..||+|++|++|++++.|+++++++.+
T Consensus 143 ~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 218 (240)
T 2onk_A 143 IQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAK 218 (240)
T ss_dssp TCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence 99999999999999999999999999988753 79999999999976 569999999999999999999998753
No 37
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=3.6e-49 Score=414.12 Aligned_cols=218 Identities=29% Similarity=0.496 Sum_probs=190.4
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
|+++|++++|++ . +|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+..+ .|++||
T Consensus 2 l~~~~l~~~y~~---~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig 75 (348)
T 3d31_A 2 IEIESLSRKWKN---F-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP--EKHDIA 75 (348)
T ss_dssp EEEEEEEEECSS---C-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCH--HHHTCE
T ss_pred EEEEEEEEEECC---E-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCch--hhCcEE
Confidence 789999999952 4 9999999999999999999999999999999999999999999999999987654 478899
Q ss_pred EEecCCCCCcc-cHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHcc
Q psy5743 480 SVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIK 558 (644)
Q Consensus 480 ~V~Q~~~Lf~g-TIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~ 558 (644)
||+|++.+|.. |++|||.|+........++++.++++..++.++..+.| .+||||||||++|||||++
T Consensus 76 ~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~-----------~~LSgGq~QRvalAraL~~ 144 (348)
T 3d31_A 76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNP-----------LTLSGGEQQRVALARALVT 144 (348)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCG-----------GGSCHHHHHHHHHHHHTTS
T ss_pred EEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCCh-----------hhCCHHHHHHHHHHHHHHc
Confidence 99999999986 99999998732100012377888888888876654444 5899999999999999999
Q ss_pred CCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhHHhcCCCcHH
Q psy5743 559 KSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHLIKNPNSMF 634 (644)
Q Consensus 559 ~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~eLl~~~~~~y 634 (644)
+|++||||||||+||+.+...+.+.|+++.+ ++|+|+|||+++.+ ..||+|++|++|++++.|+++|+++++...|
T Consensus 145 ~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~p~~~~ 223 (348)
T 3d31_A 145 NPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGR 223 (348)
T ss_dssp CCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSCCTTH
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCcccHH
Confidence 9999999999999999999999999988753 78999999999876 6699999999999999999999987654444
No 38
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=2.3e-49 Score=405.19 Aligned_cols=216 Identities=24% Similarity=0.322 Sum_probs=184.9
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCC--CCChHHHhc
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIK--ELDPMYLRS 476 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~--~~~~~~lr~ 476 (644)
-|+++||+++|++ .++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. ..+...+|+
T Consensus 21 ~l~~~~l~~~y~~---~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 97 (279)
T 2ihy_A 21 LIQLDQIGRMKQG---KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQ 97 (279)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHT
T ss_pred eEEEEeEEEEECC---EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcC
Confidence 4999999999963 47999999999999999999999999999999999999999999999999998 788888999
Q ss_pred ceEEEecCCCC-Ccc--cHHHHHhcCCCCC----CCCC---HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhH
Q psy5743 477 QIGSVSQEPTL-FSG--TIYENILYGVNDS----SSVT---KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQ 546 (644)
Q Consensus 477 ~i~~V~Q~~~L-f~g--TIreNI~~g~~~~----~~~~---~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQ 546 (644)
+|+||+|++.+ |.. |++||+.++.... ...+ ++++.++++..++.++ ......+|||||
T Consensus 98 ~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgGq 166 (279)
T 2ihy_A 98 HIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAK-----------AQQYIGYLSTGE 166 (279)
T ss_dssp TEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGG-----------TTSBGGGSCHHH
T ss_pred cEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhH-----------hcCChhhCCHHH
Confidence 99999999875 555 9999999873110 0012 2345566666665433 234456799999
Q ss_pred HHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC-CceE--EEEccCchHH-hhcCEEEEEeCCeEEEecC
Q psy5743 547 KQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE-GKTV--LTIAHRLSTI-RKSNQICVLDKGKIVEIGS 622 (644)
Q Consensus 547 kQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~-~~Tv--I~IaHrl~~i-~~aD~Iivl~~G~ive~Gt 622 (644)
|||++|||||+.+|++||||||||+||+.+.+.+.+.|+++.+ ++|+ |+|||+++.+ +.||+|++|++|++++.|+
T Consensus 167 kqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~ 246 (279)
T 2ihy_A 167 KQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGA 246 (279)
T ss_dssp HHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999999999988754 7899 9999999987 5699999999999999999
Q ss_pred hhHHhc
Q psy5743 623 YAHLIK 628 (644)
Q Consensus 623 ~~eLl~ 628 (644)
++++.+
T Consensus 247 ~~~~~~ 252 (279)
T 2ihy_A 247 VEDILT 252 (279)
T ss_dssp HHHHCS
T ss_pred HHHHhc
Confidence 999874
No 39
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=1.2e-48 Score=413.20 Aligned_cols=220 Identities=30% Similarity=0.496 Sum_probs=185.7
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++..+++. ++.|
T Consensus 11 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 85 (372)
T 1v43_A 11 EVKLENLTKRFGN---FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNI 85 (372)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTE
T ss_pred eEEEEEEEEEECC---EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChh--hCcE
Confidence 4999999999953 4699999999999999999999999999999999999999999999999999887754 5789
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCCCCCCCCH----HHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHH
Q psy5743 479 GSVSQEPTLFSG-TIYENILYGVNDSSSVTK----SDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIA 553 (644)
Q Consensus 479 ~~V~Q~~~Lf~g-TIreNI~~g~~~~~~~~~----~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLA 553 (644)
|||+|++.+|.. |++|||.|+... ...+. +++.++++..++.++..+.| .+||||||||++||
T Consensus 86 g~v~Q~~~l~~~ltv~eni~~~~~~-~~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----------~~LSGGq~QRvalA 153 (372)
T 1v43_A 86 SMVFQSYAVWPHMTVYENIAFPLKI-KKFPKDEIDKRVRWAAELLQIEELLNRYP-----------AQLSGGQRQRVAVA 153 (372)
T ss_dssp EEEEC------CCCHHHHHHTTCC---CCCHHHHHHHHHHHHHHTTCGGGTTSCT-----------TTCCSSCHHHHHHH
T ss_pred EEEecCcccCCCCCHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHcCChhHhcCCh-----------hhCCHHHHHHHHHH
Confidence 999999999975 999999998532 11232 45677777777765544433 58999999999999
Q ss_pred HHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhHHhcCC
Q psy5743 554 RALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHLIKNP 630 (644)
Q Consensus 554 RAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~eLl~~~ 630 (644)
|||+++|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+ ..||+|++|++|+|++.|+++|++.++
T Consensus 154 rAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p 233 (372)
T 1v43_A 154 RAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRP 233 (372)
T ss_dssp HHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCC
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCc
Confidence 999999999999999999999999999999988753 78999999999987 579999999999999999999999765
Q ss_pred CcHHH
Q psy5743 631 NSMFN 635 (644)
Q Consensus 631 ~~~y~ 635 (644)
...|.
T Consensus 234 ~~~~~ 238 (372)
T 1v43_A 234 NSVFV 238 (372)
T ss_dssp SBHHH
T ss_pred ccHHH
Confidence 55553
No 40
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=1e-48 Score=393.77 Aligned_cols=208 Identities=22% Similarity=0.347 Sum_probs=188.4
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
|+++||+|+ ++|+|+||++++||+++|+||||||||||+++|+|+++|+ |+|.++|+++...+...+|++++
T Consensus 5 l~~~~l~~~-------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~ 76 (249)
T 2qi9_C 5 MQLQDVAES-------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRA 76 (249)
T ss_dssp EEEEEEEET-------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEE
T ss_pred EEEEceEEE-------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEE
Confidence 899999986 4899999999999999999999999999999999999999 99999999999889899999999
Q ss_pred EEecCCCCCcc-cHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHcc
Q psy5743 480 SVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIK 558 (644)
Q Consensus 480 ~V~Q~~~Lf~g-TIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~ 558 (644)
||+|++.+|.+ |++||+.++... ..+++++.++++..++.++. .....+||||||||++|||||++
T Consensus 77 ~v~q~~~~~~~~tv~e~l~~~~~~--~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LSgGq~qrv~lAraL~~ 143 (249)
T 2qi9_C 77 YLSQQQTPPFATPVWHYLTLHQHD--KTRTELLNDVAGALALDDKL-----------GRSTNQLSGGEWQRVRLAAVVLQ 143 (249)
T ss_dssp EECSCCCCCTTCBHHHHHHTTCSS--TTCHHHHHHHHHHTTCGGGT-----------TSBGGGCCHHHHHHHHHHHHHHH
T ss_pred EECCCCccCCCCcHHHHHHHhhcc--CCcHHHHHHHHHHcCChhHh-----------cCChhhCCHHHHHHHHHHHHHHc
Confidence 99999998875 999999998421 12477788888888876543 23456899999999999999999
Q ss_pred CCC-------EEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhHHhc
Q psy5743 559 KSK-------ILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHLIK 628 (644)
Q Consensus 559 ~p~-------IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~eLl~ 628 (644)
+|+ +||||||||+||+.+.+.+.+.|+++. +++|+|+|||+++.+ ..||+|++|++|++++.|+++++.+
T Consensus 144 ~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 222 (249)
T 2qi9_C 144 ITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 222 (249)
T ss_dssp HCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHSC
T ss_pred CCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999 999999999999999999999998874 478999999999998 6799999999999999999999975
No 41
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=6.9e-49 Score=413.61 Aligned_cols=220 Identities=29% Similarity=0.445 Sum_probs=190.5
Q ss_pred EEEEEEEEEcCCCCCCc--cccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCC---hHHH
Q psy5743 400 IDFNNIRFSYPSRPDAV--ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELD---PMYL 474 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~--vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~---~~~l 474 (644)
|+++|++++|++ .+ +|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++...+ ....
T Consensus 4 l~i~~l~~~y~~---~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~ 80 (353)
T 1oxx_K 4 IIVKNVSKVFKK---GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80 (353)
T ss_dssp EEEEEEEEEEGG---GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGG
T ss_pred EEEEeEEEEECC---EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChh
Confidence 899999999953 45 999999999999999999999999999999999999999999999999987621 2345
Q ss_pred hcceEEEecCCCCCcc-cHHHHHhcCCCCCCCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHH
Q psy5743 475 RSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQR 549 (644)
Q Consensus 475 r~~i~~V~Q~~~Lf~g-TIreNI~~g~~~~~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQR 549 (644)
+++||||+|++.+|.. |++|||.|+... ...+ ++++.++++..++.++..+.| .+||||||||
T Consensus 81 ~r~ig~v~Q~~~l~~~ltv~eni~~~~~~-~~~~~~~~~~~v~~~l~~~~L~~~~~~~~-----------~~LSGGq~QR 148 (353)
T 1oxx_K 81 DRKIGMVFQTWALYPNLTAFENIAFPLTN-MKMSKEEIRKRVEEVAKILDIHHVLNHFP-----------RELSGAQQQR 148 (353)
T ss_dssp GSCEEEEETTSCCCTTSCHHHHHHGGGTT-SSCCHHHHHHHHHHHHHHTTCGGGTTSCG-----------GGSCHHHHHH
T ss_pred hCCEEEEeCCCccCCCCCHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHcCCchHhcCCh-----------hhCCHHHHHH
Confidence 7889999999999986 999999998532 1122 345777888888766554444 5899999999
Q ss_pred HHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhHH
Q psy5743 550 IAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHL 626 (644)
Q Consensus 550 iaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~eL 626 (644)
++|||||+.+|++||||||||+||+.+...+.+.|+++.+ ++|+|+|||+++.+ ..||+|++|++|+|++.|+++|+
T Consensus 149 valAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l 228 (353)
T 1oxx_K 149 VALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228 (353)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999999999999999999999999999999988753 79999999999987 56999999999999999999999
Q ss_pred hcCCCcHH
Q psy5743 627 IKNPNSMF 634 (644)
Q Consensus 627 l~~~~~~y 634 (644)
++++...|
T Consensus 229 ~~~p~~~~ 236 (353)
T 1oxx_K 229 YDNPVSIQ 236 (353)
T ss_dssp HHSCSSHH
T ss_pred HhCcccHH
Confidence 87654444
No 42
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=1.7e-48 Score=413.04 Aligned_cols=219 Identities=25% Similarity=0.450 Sum_probs=189.6
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCC------CChHH
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKE------LDPMY 473 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~------~~~~~ 473 (644)
|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++.. +++
T Consensus 4 l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~-- 78 (372)
T 1g29_1 4 VRLVDVWKVFGE---VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP-- 78 (372)
T ss_dssp EEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCG--
T ss_pred EEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCH--
Confidence 899999999953 469999999999999999999999999999999999999999999999999876 554
Q ss_pred HhcceEEEecCCCCCc-ccHHHHHhcCCCCCCCCC----HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHH
Q psy5743 474 LRSQIGSVSQEPTLFS-GTIYENILYGVNDSSSVT----KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQ 548 (644)
Q Consensus 474 lr~~i~~V~Q~~~Lf~-gTIreNI~~g~~~~~~~~----~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQ 548 (644)
.++.||||+|++.+|. .|++|||.|+... ...+ ++++.++++..++.++..+.| .+|||||||
T Consensus 79 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~-~~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----------~~LSGGq~Q 146 (372)
T 1g29_1 79 KDRDIAMVFQSYALYPHMTVYDNIAFPLKL-RKVPRQEIDQRVREVAELLGLTELLNRKP-----------RELSGGQRQ 146 (372)
T ss_dssp GGSSEEEECSCCCCCTTSCHHHHHHHHHHH-TTCCHHHHHHHHHHHHHHHTCGGGTTCCG-----------GGSCHHHHH
T ss_pred hHCCEEEEeCCCccCCCCCHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHCCCchHhcCCc-----------ccCCHHHHH
Confidence 3678999999999996 5999999987321 0122 345777888888766544433 579999999
Q ss_pred HHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhH
Q psy5743 549 RIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAH 625 (644)
Q Consensus 549 RiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~e 625 (644)
|++|||||+.+|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+ ..||+|++|++|+|++.|+++|
T Consensus 147 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~ 226 (372)
T 1g29_1 147 RVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDE 226 (372)
T ss_dssp HHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHH
Confidence 99999999999999999999999999999999999988753 78999999999987 5699999999999999999999
Q ss_pred HhcCCCcHHH
Q psy5743 626 LIKNPNSMFN 635 (644)
Q Consensus 626 Ll~~~~~~y~ 635 (644)
++.++...|.
T Consensus 227 l~~~p~~~~~ 236 (372)
T 1g29_1 227 VYDKPANTFV 236 (372)
T ss_dssp HHHSCSBHHH
T ss_pred HHhCcccHHH
Confidence 9976555553
No 43
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=1.6e-48 Score=393.81 Aligned_cols=213 Identities=25% Similarity=0.378 Sum_probs=175.1
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhcc--CCCCCcEEEECCccCCCCChHHH-hc
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRL--YDPQNGKILIDGVDIKELDPMYL-RS 476 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~--~~p~~G~I~idg~~i~~~~~~~l-r~ 476 (644)
|+++||+|+|++ .++|+|+||+|++||++||+||||||||||+++|+|+ ++|++|+|.++|.++...+.... |.
T Consensus 4 l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (250)
T 2d2e_A 4 LEIRDLWASIDG---ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARK 80 (250)
T ss_dssp EEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHT
T ss_pred EEEEeEEEEECC---EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhC
Confidence 899999999963 5799999999999999999999999999999999999 89999999999999998887765 45
Q ss_pred ceEEEecCCCCCcc-cHHHHHhcCCCC--CCCCC----HHHHHHHHHHHhhc-cchhhhhcCccccccCCCCCCChhHHH
Q psy5743 477 QIGSVSQEPTLFSG-TIYENILYGVND--SSSVT----KSDIIHAAKEANAY-GFVIDFKNGFDTIVGERGIMLSGGQKQ 548 (644)
Q Consensus 477 ~i~~V~Q~~~Lf~g-TIreNI~~g~~~--~~~~~----~~~i~~a~~~a~l~-~~i~~lp~Gl~T~ige~G~~LSGGQkQ 548 (644)
.++||+|+|.+|.+ |++||+.++... ..... ++++.++++..++. +. .+..+++ +|||||||
T Consensus 81 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-------~~~~~~~---~LSgGqkQ 150 (250)
T 2d2e_A 81 GLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESY-------LSRYLNE---GFSGGEKK 150 (250)
T ss_dssp TBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGG-------GGSBTTC---C----HHH
T ss_pred cEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhH-------hcCCccc---CCCHHHHH
Confidence 69999999999986 999999875210 00011 23455666666652 22 1222221 39999999
Q ss_pred HHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhh--cCEEEEEeCCeEEEecChhH
Q psy5743 549 RIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIRK--SNQICVLDKGKIVEIGSYAH 625 (644)
Q Consensus 549 RiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~~--aD~Iivl~~G~ive~Gt~~e 625 (644)
|++|||||+++|++||||||||+||+++++.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|+++.
T Consensus 151 rv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~ 230 (250)
T 2d2e_A 151 RNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPEL 230 (250)
T ss_dssp HHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESHHH
T ss_pred HHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCHHH
Confidence 9999999999999999999999999999999999999875 47899999999999876 59999999999999999873
No 44
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=9.7e-48 Score=391.44 Aligned_cols=215 Identities=23% Similarity=0.343 Sum_probs=179.7
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhcc--CCCCCcEEEECCccCCCCChHHH-h
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRL--YDPQNGKILIDGVDIKELDPMYL-R 475 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~--~~p~~G~I~idg~~i~~~~~~~l-r 475 (644)
-|+++||+|+|++ +++|+|+||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|.++...+.... |
T Consensus 20 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~ 96 (267)
T 2zu0_C 20 MLSIKDLHVSVED---KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAG 96 (267)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHH
T ss_pred eEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhh
Confidence 4999999999953 5799999999999999999999999999999999999 57999999999999998887665 4
Q ss_pred cceEEEecCCCCCcc-cHHHHHhcCCC------CCCCCCH----HHHHHHHHHHhhccchhhhhcCccccccCCC-C-CC
Q psy5743 476 SQIGSVSQEPTLFSG-TIYENILYGVN------DSSSVTK----SDIIHAAKEANAYGFVIDFKNGFDTIVGERG-I-ML 542 (644)
Q Consensus 476 ~~i~~V~Q~~~Lf~g-TIreNI~~g~~------~~~~~~~----~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G-~-~L 542 (644)
+.++||+|++.+|.+ |++||+.++.. .....+. +++.++++..++ ++...++. . +|
T Consensus 97 ~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~~~~~~~~~~L 165 (267)
T 2zu0_C 97 EGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKM-----------PEDLLTRSVNVGF 165 (267)
T ss_dssp HTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTC-----------CTTTTTSBTTTTC
T ss_pred CCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCC-----------ChhHhcCCcccCC
Confidence 469999999999886 89999976320 0001222 234445555444 22222222 2 59
Q ss_pred ChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhh--cCEEEEEeCCeEEE
Q psy5743 543 SGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIRK--SNQICVLDKGKIVE 619 (644)
Q Consensus 543 SGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~~--aD~Iivl~~G~ive 619 (644)
|||||||++|||||+++|+|||||||||+||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++
T Consensus 166 SgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~ 245 (267)
T 2zu0_C 166 SGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVK 245 (267)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEE
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999998874 47899999999999875 89999999999999
Q ss_pred ecChhHHh
Q psy5743 620 IGSYAHLI 627 (644)
Q Consensus 620 ~Gt~~eLl 627 (644)
.|+++++.
T Consensus 246 ~g~~~~~~ 253 (267)
T 2zu0_C 246 SGDFTLVK 253 (267)
T ss_dssp EECTTHHH
T ss_pred EcCHHHHh
Confidence 99999874
No 45
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.3e-47 Score=388.58 Aligned_cols=209 Identities=18% Similarity=0.299 Sum_probs=182.5
Q ss_pred EEEEEEEEEcCCC-CCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 400 IDFNNIRFSYPSR-PDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 400 I~~~~vsf~Y~~~-~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
|+++|++++|++. .++++|+|+||+++ ||+++|+||||||||||+++|+|++ |++|+|.++|.++... .. |+++
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~--~~-~~~i 76 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI--RN-YIRY 76 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC--SC-CTTE
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch--HH-hhhe
Confidence 7899999999631 01579999999999 9999999999999999999999999 9999999999998765 23 7789
Q ss_pred E-EEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhc-cchhhhhcCccccccCCCCCCChhHHHHHHHHHHH
Q psy5743 479 G-SVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAY-GFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARAL 556 (644)
Q Consensus 479 ~-~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~-~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAl 556 (644)
+ ||+|++.+ +.|++||+.++.+. ...+++++.++++..++. +. ......+||||||||++|||||
T Consensus 77 ~~~v~Q~~~l-~~tv~enl~~~~~~-~~~~~~~~~~~l~~~gl~~~~-----------~~~~~~~LSgGqkqRv~lAraL 143 (263)
T 2pjz_A 77 STNLPEAYEI-GVTVNDIVYLYEEL-KGLDRDLFLEMLKALKLGEEI-----------LRRKLYKLSAGQSVLVRTSLAL 143 (263)
T ss_dssp EECCGGGSCT-TSBHHHHHHHHHHH-TCCCHHHHHHHHHHTTCCGGG-----------GGSBGGGSCHHHHHHHHHHHHH
T ss_pred EEEeCCCCcc-CCcHHHHHHHhhhh-cchHHHHHHHHHHHcCCChhH-----------hcCChhhCCHHHHHHHHHHHHH
Confidence 9 99999999 99999999986421 024577788888777664 33 3445678999999999999999
Q ss_pred ccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHH-hhcC-EEEEEeCCeEEEecChhHHhc
Q psy5743 557 IKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTI-RKSN-QICVLDKGKIVEIGSYAHLIK 628 (644)
Q Consensus 557 l~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i-~~aD-~Iivl~~G~ive~Gt~~eLl~ 628 (644)
+++|++||||||||+||+++.+.+.+.|+++.+ |+|+|||+++.+ +.|| +|++|++|++++.|+++|+.+
T Consensus 144 ~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~--tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~ 215 (263)
T 2pjz_A 144 ASQPEIVGLDEPFENVDAARRHVISRYIKEYGK--EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLE 215 (263)
T ss_dssp HTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS--EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHHT
T ss_pred HhCCCEEEEECCccccCHHHHHHHHHHHHHhcC--cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHHh
Confidence 999999999999999999999999999988754 999999999987 5799 999999999999999999974
No 46
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=2.1e-47 Score=385.67 Aligned_cols=210 Identities=30% Similarity=0.425 Sum_probs=178.7
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
|+++|++++|++ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|. +++.++
T Consensus 5 l~i~~l~~~y~~--~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~-------------~~~~i~ 69 (253)
T 2nq2_C 5 LSVENLGFYYQA--ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE-------------VYQSIG 69 (253)
T ss_dssp EEEEEEEEEETT--TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE-------------ECSCEE
T ss_pred EEEeeEEEEeCC--CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-------------EeccEE
Confidence 899999999962 35799999999999999999999999999999999999999999998 356899
Q ss_pred EEecCCCCC-cccHHHHHhcCCCCC-------CCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHH
Q psy5743 480 SVSQEPTLF-SGTIYENILYGVNDS-------SSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIA 551 (644)
Q Consensus 480 ~V~Q~~~Lf-~gTIreNI~~g~~~~-------~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRia 551 (644)
||+|++.+| ..|++||+.++.... ...+++++.++++..++.++.. ....+||||||||++
T Consensus 70 ~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgGq~qrv~ 138 (253)
T 2nq2_C 70 FVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAK-----------REFTSLSGGQRQLIL 138 (253)
T ss_dssp EECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTT-----------SBGGGSCHHHHHHHH
T ss_pred EEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhc-----------CChhhCCHHHHHHHH
Confidence 999999988 679999999974210 0012345677777777655432 345689999999999
Q ss_pred HHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHH-hhcCEEEEEeCCeEEEecChhHHhc
Q psy5743 552 IARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHLIK 628 (644)
Q Consensus 552 LARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i-~~aD~Iivl~~G~ive~Gt~~eLl~ 628 (644)
|||||+++|++||||||||+||+.+.+.+.+.|.++.+ ++|+|+|||+++.+ +.||+|++|++|+ ++.|+++++++
T Consensus 139 lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~~ 217 (253)
T 2nq2_C 139 IARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNILT 217 (253)
T ss_dssp HHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHHCC
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHHhC
Confidence 99999999999999999999999999999999988754 78999999999998 5799999999999 99999999874
Q ss_pred CCCcHHHHHH
Q psy5743 629 NPNSMFNKLM 638 (644)
Q Consensus 629 ~~~~~y~~l~ 638 (644)
. ..+.+.+
T Consensus 218 ~--~~~~~~~ 225 (253)
T 2nq2_C 218 S--ENLTALF 225 (253)
T ss_dssp H--HHHHHHH
T ss_pred c--HHHHHHh
Confidence 3 3344444
No 47
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=8.2e-47 Score=371.00 Aligned_cols=199 Identities=20% Similarity=0.321 Sum_probs=168.1
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
.|+++||+++|+ + ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+|+.+
T Consensus 10 ~l~~~~ls~~y~---~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-----~~~~~i 80 (214)
T 1sgw_A 10 KLEIRDLSVGYD---K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKI 80 (214)
T ss_dssp EEEEEEEEEESS---S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGGE
T ss_pred eEEEEEEEEEeC---C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----hhcCcE
Confidence 499999999995 3 6999999999999999999999999999999999999999999999999886 368899
Q ss_pred EEEecCCCCCcc-cHHHHHhcCCCCCC-CCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHH
Q psy5743 479 GSVSQEPTLFSG-TIYENILYGVNDSS-SVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARAL 556 (644)
Q Consensus 479 ~~V~Q~~~Lf~g-TIreNI~~g~~~~~-~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAl 556 (644)
+||+|++.+|.+ |++||+.++..... ..+++++.++++..++. .. .....+||||||||++|||||
T Consensus 81 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~-----------~~-~~~~~~LSgGqkqrv~laraL 148 (214)
T 1sgw_A 81 FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVL-----------DL-KKKLGELSQGTIRRVQLASTL 148 (214)
T ss_dssp EEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCC-----------CT-TSBGGGSCHHHHHHHHHHHHT
T ss_pred EEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCC-----------cC-CCChhhCCHHHHHHHHHHHHH
Confidence 999999999987 99999998632100 12356777777766543 33 455678999999999999999
Q ss_pred ccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhhcCEEEEEeCCeEE
Q psy5743 557 IKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIRKSNQICVLDKGKIV 618 (644)
Q Consensus 557 l~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~~aD~Iivl~~G~iv 618 (644)
+++|++||||||||+||+.+...+.+.|.++. +++|+|+|||+++.+..++..+++.+|+|-
T Consensus 149 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~~~~~~~~ 211 (214)
T 1sgw_A 149 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLHKYSTKID 211 (214)
T ss_dssp TSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGGGGBC---
T ss_pred HhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEeCCccc
Confidence 99999999999999999999999999998875 478999999999998775444556667764
No 48
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=100.00 E-value=2.6e-45 Score=377.21 Aligned_cols=241 Identities=17% Similarity=0.197 Sum_probs=201.0
Q ss_pred HHHcCCcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCCCCccCCCCCccEEEEEEEEE
Q psy5743 329 MVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMEREPLISTSGGKFFSHSLKGEIDFNNIRFS 408 (644)
Q Consensus 329 ~v~~g~~t~g~l~a~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~Rl~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~ 408 (644)
-...+..+-+.+.+|+.+..+ ..|+..++..+..++++..+.+|+.++++.+++....... ..+..+.|+++||+|+
T Consensus 34 ~~a~~~~~~~n~~afl~~~~q-~~~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~~~--~~~~~~~i~~~~vs~~ 110 (305)
T 2v9p_A 34 EYALAAGSDSNARAFLATNSQ-AKHVKDCATMVRHYLRAETQALSMPAYIKARCKLATGEGS--WKSILTFFNYQNIELI 110 (305)
T ss_dssp HHHHTTTTCHHHHHHTTCTTH-HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCCSSCC--THHHHHHHHHTTCCHH
T ss_pred HHHHhcCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCc--ccccCCeEEEEEEEEE
Confidence 345566777889999988777 4899999999999999999999999999865432221111 0111235899999999
Q ss_pred cCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCC
Q psy5743 409 YPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLF 488 (644)
Q Consensus 409 Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf 488 (644)
|+ .++|+|+||+|++|+++|||||||||||||+++|+|++ +|+| +++|+|++++|
T Consensus 111 y~----~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I------------------~~~v~q~~~lf 165 (305)
T 2v9p_A 111 TF----INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSV------------------LSFANHKSHFW 165 (305)
T ss_dssp HH----HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEE------------------ECGGGTTSGGG
T ss_pred cC----hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceE------------------EEEecCccccc
Confidence 95 46999999999999999999999999999999999999 7998 45789999999
Q ss_pred cccHHH-HHhcCCCCCCCCCHHHHHHHHHHHhhccchhh-hhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEee
Q psy5743 489 SGTIYE-NILYGVNDSSSVTKSDIIHAAKEANAYGFVID-FKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLD 566 (644)
Q Consensus 489 ~gTIre-NI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~-lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLD 566 (644)
++|++| ||.++ ++ +++ +++++++. ||+|++ |.+|||||||| |||++++|+|||
T Consensus 166 ~~ti~~~ni~~~-~~---~~~----------~~~~~i~~~L~~gld------g~~LSgGqkQR---ARAll~~p~iLl-- 220 (305)
T 2v9p_A 166 LASLADTRAALV-DD---ATH----------ACWRYFDTYLRNALD------GYPVSIDRKHK---AAVQIKAPPLLV-- 220 (305)
T ss_dssp GGGGTTCSCEEE-EE---ECH----------HHHHHHHHTTTGGGG------TCCEECCCSSC---CCCEECCCCEEE--
T ss_pred cccHHHHhhccC-cc---ccH----------HHHHHHHHHhHccCC------ccCcCHHHHHH---HHHHhCCCCEEE--
Confidence 999998 99997 33 343 34566777 899998 78999999999 999999999999
Q ss_pred cccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEecChhHHhcCCCcHHHHHHHhhc
Q psy5743 567 EATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLMKYQT 642 (644)
Q Consensus 567 EaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eLl~~~~~~y~~l~~~q~ 642 (644)
||+||+++++.|.. +|||+++++.||+| +|++|+|++.|+|++| ++.|++++..|.
T Consensus 221 --Ts~LD~~~~~~i~~-------------ltH~~~~~~~aD~i-vl~~G~iv~~g~~~el----~~~y~~l~~~~~ 276 (305)
T 2v9p_A 221 --TSNIDVQAEDRYLY-------------LHSRVQTFRFEQPC-TDESGEQPFNITDADW----KSFFVRLWGRLD 276 (305)
T ss_dssp --EESSCSTTCGGGGG-------------GTTTEEEEECCCCC-CCC---CCCCCCHHHH----HHHHHHSTTTTT
T ss_pred --ECCCCHHHHHHHHH-------------HhCCHHHHHhCCEE-EEeCCEEEEeCCHHHH----HHHHHHHHHHcc
Confidence 99999999988852 39999999999999 9999999999999999 378999987654
No 49
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=4.2e-37 Score=341.49 Aligned_cols=202 Identities=23% Similarity=0.288 Sum_probs=166.4
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
.++++|++.+|.+ ..|++.||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. .+
T Consensus 269 ~l~~~~l~~~~~~----~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~i 332 (538)
T 3ozx_A 269 KMKWTKIIKKLGD----FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQ------------IL 332 (538)
T ss_dssp EEEECCEEEEETT----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCC------------CE
T ss_pred eEEEcceEEEECC----EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCe------------ee
Confidence 4889999999953 4688889999999999999999999999999999999999999998763 68
Q ss_pred EEEecCCCC-CcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHc
Q psy5743 479 GSVSQEPTL-FSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALI 557 (644)
Q Consensus 479 ~~V~Q~~~L-f~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll 557 (644)
+|+||++.. +..|++||+.+..........+.+.++++..++.++ ......+||||||||++|||||.
T Consensus 333 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSGGq~QRv~iAraL~ 401 (538)
T 3ozx_A 333 SYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRL-----------LESNVNDLSGGELQKLYIAATLA 401 (538)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGGGC-----------TTSBGGGCCHHHHHHHHHHHHHH
T ss_pred EeechhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHHcCCHHH-----------hcCChhhCCHHHHHHHHHHHHHH
Confidence 999999874 578999999875332111223444555555554433 33344679999999999999999
Q ss_pred cCCCEEEeecccCCCCHHHHHHHHHHHHHHc--CCceEEEEccCchHHhh-cCEEEEEeC--CeEEEecChhHHh
Q psy5743 558 KKSKILLLDEATSALDAENEYLVQSAIEKLI--EGKTVLTIAHRLSTIRK-SNQICVLDK--GKIVEIGSYAHLI 627 (644)
Q Consensus 558 ~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~--~~~TvI~IaHrl~~i~~-aD~Iivl~~--G~ive~Gt~~eLl 627 (644)
++|+|||||||||+||..+...+.+.|+++. .++|+|+|||+++.+.. ||+|++|++ |.+...|++.++.
T Consensus 402 ~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~~~ 476 (538)
T 3ozx_A 402 KEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTLK 476 (538)
T ss_dssp SCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChHHHH
Confidence 9999999999999999999999999998875 47899999999999865 999999986 5666677766653
No 50
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=2.1e-37 Score=344.82 Aligned_cols=200 Identities=27% Similarity=0.354 Sum_probs=165.9
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
.++++|++++|.+ ..|+++||+|++||++||+||||||||||+++|+|+++|++|+|.++ ..+
T Consensus 287 ~l~~~~l~~~~~~----~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~-------------~~i 349 (538)
T 1yqt_A 287 LVTYPRLVKDYGS----FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWD-------------LTV 349 (538)
T ss_dssp EEEECCEEEEETT----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCC-------------CCE
T ss_pred EEEEeeEEEEECC----EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC-------------ceE
Confidence 4899999999953 36899999999999999999999999999999999999999999862 379
Q ss_pred EEEecCCCC-CcccHHHHHhcC-CCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHH
Q psy5743 479 GSVSQEPTL-FSGTIYENILYG-VNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARAL 556 (644)
Q Consensus 479 ~~V~Q~~~L-f~gTIreNI~~g-~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAl 556 (644)
+||||++.. ++.|+.||+... .+. ....+++.++++..+ +..........||||||||++|||||
T Consensus 350 ~~v~Q~~~~~~~~tv~~~~~~~~~~~--~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LSGGe~qrv~lAraL 416 (538)
T 1yqt_A 350 AYKPQYIKADYEGTVYELLSKIDASK--LNSNFYKTELLKPLG-----------IIDLYDREVNELSGGELQRVAIAATL 416 (538)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHHHHH--HTCHHHHHHTTTTTT-----------CGGGTTSBGGGCCHHHHHHHHHHHHH
T ss_pred EEEecCCcCCCCCcHHHHHHhhhccC--CCHHHHHHHHHHHcC-----------ChhhhcCChhhCCHHHHHHHHHHHHH
Confidence 999999876 678999998754 110 011233333333333 33333444568999999999999999
Q ss_pred ccCCCEEEeecccCCCCHHHHHHHHHHHHHHc--CCceEEEEccCchHHh-hcCEEEEEeC--CeEEEecChhHHhc
Q psy5743 557 IKKSKILLLDEATSALDAENEYLVQSAIEKLI--EGKTVLTIAHRLSTIR-KSNQICVLDK--GKIVEIGSYAHLIK 628 (644)
Q Consensus 557 l~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~--~~~TvI~IaHrl~~i~-~aD~Iivl~~--G~ive~Gt~~eLl~ 628 (644)
+++|++|||||||++||..+...+.+.|+++. .++|+|+|||+++.+. .||+|++|++ |+++..|++++++.
T Consensus 417 ~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 417 LRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp TSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred HhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 99999999999999999999999999998874 3899999999999986 5999999996 78889999988874
No 51
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=3.4e-37 Score=346.59 Aligned_cols=200 Identities=26% Similarity=0.351 Sum_probs=168.5
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
.++++|++++|.+ ..|+++||++++||++||+||||||||||+++|+|+++|++|+|.++ ..+
T Consensus 357 ~l~~~~l~~~~~~----~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~-------------~~i 419 (607)
T 3bk7_A 357 LVEYPRLVKDYGS----FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD-------------LTV 419 (607)
T ss_dssp EEEECCEEEECSS----CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCC-------------CCE
T ss_pred EEEEeceEEEecc----eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEe-------------eEE
Confidence 4899999999953 36899999999999999999999999999999999999999999862 379
Q ss_pred EEEecCCCC-CcccHHHHHhcC-CCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHH
Q psy5743 479 GSVSQEPTL-FSGTIYENILYG-VNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARAL 556 (644)
Q Consensus 479 ~~V~Q~~~L-f~gTIreNI~~g-~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAl 556 (644)
+||||++.+ ++.|++||+... .+. ..+.+++.++++..++.+. ......+||||||||++|||||
T Consensus 420 ~~v~Q~~~~~~~~tv~e~~~~~~~~~--~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSGGe~QRv~iAraL 486 (607)
T 3bk7_A 420 AYKPQYIKAEYEGTVYELLSKIDSSK--LNSNFYKTELLKPLGIIDL-----------YDRNVEDLSGGELQRVAIAATL 486 (607)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHHHHH--HHCHHHHHHTHHHHTCTTT-----------TTSBGGGCCHHHHHHHHHHHHH
T ss_pred EEEecCccCCCCCcHHHHHHhhhccC--CCHHHHHHHHHHHcCCchH-----------hcCChhhCCHHHHHHHHHHHHH
Confidence 999999876 678999999764 110 0123445556666655432 2233457999999999999999
Q ss_pred ccCCCEEEeecccCCCCHHHHHHHHHHHHHHc--CCceEEEEccCchHHh-hcCEEEEEeC--CeEEEecChhHHhc
Q psy5743 557 IKKSKILLLDEATSALDAENEYLVQSAIEKLI--EGKTVLTIAHRLSTIR-KSNQICVLDK--GKIVEIGSYAHLIK 628 (644)
Q Consensus 557 l~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~--~~~TvI~IaHrl~~i~-~aD~Iivl~~--G~ive~Gt~~eLl~ 628 (644)
.++|++||||||||+||..+...+.+.|+++. .++|+|+|||+++.+. .||+|++|++ |+++..|++++++.
T Consensus 487 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 487 LRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp TSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred HhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 99999999999999999999999999999874 4899999999999986 5999999986 88888999998874
No 52
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=3.5e-37 Score=357.37 Aligned_cols=198 Identities=24% Similarity=0.388 Sum_probs=154.1
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
|+++|++|+|++. ++++|+|+||++++|+++||+||||||||||+|+|+|+++|++|+|.++|. ..++
T Consensus 672 L~v~nLs~~Y~g~-~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~-----------~~I~ 739 (986)
T 2iw3_A 672 VKVTNMEFQYPGT-SKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN-----------CRIA 739 (986)
T ss_dssp EEEEEEEECCTTC-SSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTT-----------CCEE
T ss_pred EEEEeeEEEeCCC-CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCc-----------cceE
Confidence 8999999999742 357999999999999999999999999999999999999999999999872 1578
Q ss_pred EEecCCCC-----CcccHHHHHhc--------------------------------------------------------
Q psy5743 480 SVSQEPTL-----FSGTIYENILY-------------------------------------------------------- 498 (644)
Q Consensus 480 ~V~Q~~~L-----f~gTIreNI~~-------------------------------------------------------- 498 (644)
||+|++.. ++.|+++|+.+
T Consensus 740 yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~ 819 (986)
T 2iw3_A 740 YIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYEC 819 (986)
T ss_dssp EECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEE
T ss_pred eeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhhh
Confidence 88887531 23455555532
Q ss_pred ----------CCCC--------------------------------------CCCCCHHHHHHHHHHHhhccchhhhhcC
Q psy5743 499 ----------GVND--------------------------------------SSSVTKSDIIHAAKEANAYGFVIDFKNG 530 (644)
Q Consensus 499 ----------g~~~--------------------------------------~~~~~~~~i~~a~~~a~l~~~i~~lp~G 530 (644)
+.+. ..+..++++.+.++.. |
T Consensus 820 ~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~l-----------G 888 (986)
T 2iw3_A 820 SFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSML-----------G 888 (986)
T ss_dssp EEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHT-----------T
T ss_pred hhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHc-----------C
Confidence 1100 0001122233333333 4
Q ss_pred ccccc--cCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh-hcC
Q psy5743 531 FDTIV--GERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIR-KSN 607 (644)
Q Consensus 531 l~T~i--ge~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~-~aD 607 (644)
++... .....+||||||||++||||++.+|+||||||||++||.++...+.+.|++. +.|+|+|||+++.+. .||
T Consensus 889 L~~~~~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~--g~tVIiISHD~e~v~~l~D 966 (986)
T 2iw3_A 889 LDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVIIITHSAEFTKNLTE 966 (986)
T ss_dssp CCHHHHHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC--SSEEEEECSCHHHHTTTCC
T ss_pred CCchhhcCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh--CCEEEEEECCHHHHHHhCC
Confidence 43322 3445689999999999999999999999999999999999999999999876 679999999999985 699
Q ss_pred EEEEEeCCeEEEecC
Q psy5743 608 QICVLDKGKIVEIGS 622 (644)
Q Consensus 608 ~Iivl~~G~ive~Gt 622 (644)
+|++|++|++++.|+
T Consensus 967 rVivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 967 EVWAVKDGRMTPSGH 981 (986)
T ss_dssp EEECCBTTBCCC---
T ss_pred EEEEEECCEEEEeCC
Confidence 999999999998774
No 53
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.5e-36 Score=336.11 Aligned_cols=200 Identities=25% Similarity=0.376 Sum_probs=166.7
Q ss_pred EEEEEEcCCCCCCccccceeEEEeCC-----CEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcc
Q psy5743 403 NNIRFSYPSRPDAVILNDLSLKIQSG-----SMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQ 477 (644)
Q Consensus 403 ~~vsf~Y~~~~~~~vL~~isl~i~~G-----~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~ 477 (644)
++++|+|++ ...+++|+||++++| |+++|+||||||||||+++|+|+++|++|+. +. +..
T Consensus 350 ~~~~~~y~~--~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~-------~~~ 414 (608)
T 3j16_B 350 ASRAFSYPS--LKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IP-------KLN 414 (608)
T ss_dssp SSSCCEECC--EEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CC-------SCC
T ss_pred cceeEEecC--cccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------cc-------CCc
Confidence 678899974 346799999999999 7899999999999999999999999999972 21 236
Q ss_pred eEEEecCCC-CCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHH
Q psy5743 478 IGSVSQEPT-LFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARAL 556 (644)
Q Consensus 478 i~~V~Q~~~-Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAl 556 (644)
++|++|+.. .|.+|+++|+...... ...+.+...++++..++.+. .......||||||||++|||||
T Consensus 415 i~~~~q~~~~~~~~tv~e~~~~~~~~-~~~~~~~~~~~l~~l~l~~~-----------~~~~~~~LSGGqkQRv~iAraL 482 (608)
T 3j16_B 415 VSMKPQKIAPKFPGTVRQLFFKKIRG-QFLNPQFQTDVVKPLRIDDI-----------IDQEVQHLSGGELQRVAIVLAL 482 (608)
T ss_dssp EEEECSSCCCCCCSBHHHHHHHHCSS-TTTSHHHHHHTHHHHTSTTT-----------SSSBSSSCCHHHHHHHHHHHHT
T ss_pred EEEecccccccCCccHHHHHHHHhhc-ccccHHHHHHHHHHcCChhh-----------hcCChhhCCHHHHHHHHHHHHH
Confidence 999999965 5788999998753221 11345556666777766443 2334467999999999999999
Q ss_pred ccCCCEEEeecccCCCCHHHHHHHHHHHHHHc--CCceEEEEccCchHHhh-cCEEEEEeC--CeEEEecChhHHhcC
Q psy5743 557 IKKSKILLLDEATSALDAENEYLVQSAIEKLI--EGKTVLTIAHRLSTIRK-SNQICVLDK--GKIVEIGSYAHLIKN 629 (644)
Q Consensus 557 l~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~--~~~TvI~IaHrl~~i~~-aD~Iivl~~--G~ive~Gt~~eLl~~ 629 (644)
..+|+||||||||++||+.+...+.+.|+++. .++|+|+|||+++.+.. ||+|++|++ |+++..|++++++..
T Consensus 483 ~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 483 GIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp TSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred HhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence 99999999999999999999999999998864 48999999999999864 999999996 999999999999864
No 54
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=2.8e-36 Score=339.13 Aligned_cols=197 Identities=25% Similarity=0.321 Sum_probs=159.8
Q ss_pred cEEE--------EEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEE---------EE
Q psy5743 399 EIDF--------NNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI---------LI 461 (644)
Q Consensus 399 ~I~~--------~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I---------~i 461 (644)
.|++ +|++++|++ ...+|+|+| ++++||++||+||||||||||+++|+|+++|++|++ .+
T Consensus 83 ~i~i~~l~~~~~~~ls~~yg~--~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~ 159 (607)
T 3bk7_A 83 AISIVNLPEQLDEDCVHRYGV--NAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAF 159 (607)
T ss_dssp CCEEEEECTTGGGSEEEECST--TCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHT
T ss_pred eEEEecCCccccCCeEEEECC--CCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhhee
Confidence 4788 899999964 235899999 999999999999999999999999999999999996 45
Q ss_pred CCccCCCCChHH--HhcceEEEecCC----CCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccc
Q psy5743 462 DGVDIKELDPMY--LRSQIGSVSQEP----TLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIV 535 (644)
Q Consensus 462 dg~~i~~~~~~~--lr~~i~~V~Q~~----~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~i 535 (644)
+|.++..+.... .+..+++++|.. .++.+|++||+.... ..+++.++++..++.+.. +..
T Consensus 160 ~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~------~~~~~~~~L~~lgL~~~~-------~~~- 225 (607)
T 3bk7_A 160 RGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVD------EVGKFEEVVKELELENVL-------DRE- 225 (607)
T ss_dssp TTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHTC------CSSCHHHHHHHTTCTTGG-------GSB-
T ss_pred CCEehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhhH------HHHHHHHHHHHcCCCchh-------CCC-
Confidence 676654331111 234588888864 345579999997531 235567778887765432 222
Q ss_pred cCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHh-hcCEEEEEe
Q psy5743 536 GERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIR-KSNQICVLD 613 (644)
Q Consensus 536 ge~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~-~aD~Iivl~ 613 (644)
-..||||||||++|||||+++|++||||||||+||+.+...+.+.|+++. .++|+|+|||+++.+. .||+|++|+
T Consensus 226 ---~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~ 302 (607)
T 3bk7_A 226 ---LHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVY 302 (607)
T ss_dssp ---GGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEE
T ss_pred ---hhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEEC
Confidence 34699999999999999999999999999999999999999999998874 3899999999999885 489999998
Q ss_pred CC
Q psy5743 614 KG 615 (644)
Q Consensus 614 ~G 615 (644)
++
T Consensus 303 ~~ 304 (607)
T 3bk7_A 303 GE 304 (607)
T ss_dssp SC
T ss_pred CC
Confidence 65
No 55
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=1.3e-35 Score=340.65 Aligned_cols=215 Identities=22% Similarity=0.359 Sum_probs=141.8
Q ss_pred CCccccceeEEEeCCCEEEEECCCCCcHHHHH---------------------HHHhccCCCC-------CcEEEECCcc
Q psy5743 414 DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLA---------------------MLLLRLYDPQ-------NGKILIDGVD 465 (644)
Q Consensus 414 ~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl---------------------~lL~g~~~p~-------~G~I~idg~~ 465 (644)
...+|+||||+|++||++||+||||||||||+ +++.|+..|+ .|.|.++|.+
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 34689999999999999999999999999998 8999999998 5666777766
Q ss_pred CCCCChHHHhcceEEEecCCCCC--------------------cccHHHHHhcCCCCCCCCCHHH-----HHHHHHHHhh
Q psy5743 466 IKELDPMYLRSQIGSVSQEPTLF--------------------SGTIYENILYGVNDSSSVTKSD-----IIHAAKEANA 520 (644)
Q Consensus 466 i~~~~~~~lr~~i~~V~Q~~~Lf--------------------~gTIreNI~~g~~~~~~~~~~~-----i~~a~~~a~l 520 (644)
.... .++.+++|+|.+.++ .-|++||+.++........+.+ +.++.+..++
T Consensus 110 ~~~~----~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (670)
T 3ux8_A 110 TSRN----PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGF 185 (670)
T ss_dssp ---------CCBHHHHTTCC-------------------------CC--------------------------CHHHHHH
T ss_pred hhcc----chhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHH
Confidence 5432 345677777765443 4589999988532100000111 1111111111
Q ss_pred ccchhhhhcCcccc-ccCCCCCCChhHHHHHHHHHHHccCCC--EEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEE
Q psy5743 521 YGFVIDFKNGFDTI-VGERGIMLSGGQKQRIAIARALIKKSK--ILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTI 596 (644)
Q Consensus 521 ~~~i~~lp~Gl~T~-ige~G~~LSGGQkQRiaLARAll~~p~--IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~I 596 (644)
++.+ |++.. .......||||||||++|||||+.+|+ +||||||||+||+.+...+.+.|+++. .++|+|+|
T Consensus 186 ---l~~~--gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~v 260 (670)
T 3ux8_A 186 ---LQNV--GLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVV 260 (670)
T ss_dssp ---HHHT--TCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEE
T ss_pred ---HHHc--CCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 1211 33221 234456799999999999999999988 999999999999999999999998864 47899999
Q ss_pred ccCchHHhhcCEEEEE------eCCeEEEecChhHHhcCCCcHHHHH
Q psy5743 597 AHRLSTIRKSNQICVL------DKGKIVEIGSYAHLIKNPNSMFNKL 637 (644)
Q Consensus 597 aHrl~~i~~aD~Iivl------~~G~ive~Gt~~eLl~~~~~~y~~l 637 (644)
||+++.+..||+|++| ++|++++.|+++++.+.+...+...
T Consensus 261 tHd~~~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 307 (670)
T 3ux8_A 261 EHDEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMNDPNSLTGQY 307 (670)
T ss_dssp CCCHHHHHHCSEEEEECSSSGGGCCSEEEEECHHHHHTCTTCHHHHH
T ss_pred eCCHHHHhhCCEEEEecccccccCCEEEEecCHHHHhcCchhHHHHH
Confidence 9999999999999999 8999999999999987644444433
No 56
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=9.8e-36 Score=341.69 Aligned_cols=206 Identities=27% Similarity=0.352 Sum_probs=153.7
Q ss_pred CccccceeEEEeCCCEEEEECCCCCcHHHHHHHHh---------------------ccCCCCCcEEEECCccCCCCChHH
Q psy5743 415 AVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLL---------------------RLYDPQNGKILIDGVDIKELDPMY 473 (644)
Q Consensus 415 ~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~---------------------g~~~p~~G~I~idg~~i~~~~~~~ 473 (644)
.++|+||||+|++||++||+||||||||||+++++ +-+.+.+|.|.++|.++.......
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~~~~~i~~~~~~~~~~~~~~ 414 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSN 414 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGGCSEEEECCSSCSCSSTTCC
T ss_pred ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhcccccccccccccccccCceeEeccccCCCCCCcc
Confidence 46899999999999999999999999999998764 112344579999999987654322
Q ss_pred Hhc-----------------------------------------ceEEEecCCCCC------------------------
Q psy5743 474 LRS-----------------------------------------QIGSVSQEPTLF------------------------ 488 (644)
Q Consensus 474 lr~-----------------------------------------~i~~V~Q~~~Lf------------------------ 488 (644)
.+. ..|++.|+..++
T Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (670)
T 3ux8_A 415 PATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTY 494 (670)
T ss_dssp HHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCCB
T ss_pred hhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhheee
Confidence 111 123333332222
Q ss_pred ---------cccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccC
Q psy5743 489 ---------SGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKK 559 (644)
Q Consensus 489 ---------~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~ 559 (644)
.-|++||+.+.... ...++..++++..++. +...+....+||||||||++|||||+++
T Consensus 495 ~~~~~~~~~~ltv~e~l~~~~~~---~~~~~~~~~l~~~~l~----------~~~~~~~~~~LSgG~~qrv~iAraL~~~ 561 (670)
T 3ux8_A 495 KGKNIAEVLDMTVEDALDFFASI---PKIKRKLETLYDVGLG----------YMKLGQPATTLSGGEAQRVKLAAELHRR 561 (670)
T ss_dssp TTBCHHHHHTSBHHHHHHHTTTC---HHHHHHHHHHHHTTCT----------TSBTTCCGGGCCHHHHHHHHHHHHHHSC
T ss_pred cCCCHHHHhhCCHHHHHHHHHHh---hhHHHHHHHHHHcCCc----------hhhccCCchhCCHHHHHHHHHHHHHhhC
Confidence 35889999887431 1223333333333321 1234566778999999999999999988
Q ss_pred C---CEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhhcCEEEEE------eCCeEEEecChhHHhcC
Q psy5743 560 S---KILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIRKSNQICVL------DKGKIVEIGSYAHLIKN 629 (644)
Q Consensus 560 p---~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~~aD~Iivl------~~G~ive~Gt~~eLl~~ 629 (644)
| ++||||||||+||+.+...+.+.|+++. .++|+|+|||+++.+..||+|++| ++|+|++.|+++|+.+.
T Consensus 562 p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~~~~d~i~~l~~~~g~~~G~i~~~g~~~~~~~~ 641 (670)
T 3ux8_A 562 SNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEV 641 (670)
T ss_dssp CCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEECHHHHHTC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHhCCEEEEecCCcCCCCCEEEEecCHHHHHhC
Confidence 7 5999999999999999999999998875 479999999999999999999999 89999999999999875
Q ss_pred CCcH
Q psy5743 630 PNSM 633 (644)
Q Consensus 630 ~~~~ 633 (644)
++..
T Consensus 642 ~~~~ 645 (670)
T 3ux8_A 642 KESH 645 (670)
T ss_dssp TTCH
T ss_pred CccH
Confidence 4333
No 57
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=4.9e-36 Score=333.85 Aligned_cols=196 Identities=24% Similarity=0.320 Sum_probs=155.4
Q ss_pred EEE-EEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEE---------EECCccCCCC
Q psy5743 400 IDF-NNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI---------LIDGVDIKEL 469 (644)
Q Consensus 400 I~~-~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I---------~idg~~i~~~ 469 (644)
.++ +|++++|++ ..++|+|+| +|++||++||+||||||||||+|+|+|+++|++|++ .++|.++...
T Consensus 21 ~~~~~~ls~~yg~--~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~ 97 (538)
T 1yqt_A 21 EQLEEDCVHRYGV--NAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNY 97 (538)
T ss_dssp ---CCCEEEECST--TCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHH
T ss_pred hhHhcCcEEEECC--ccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHH
Confidence 355 699999964 235899999 999999999999999999999999999999999996 4566655432
Q ss_pred ChHHH--hcceEEEecCCCC----CcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCC
Q psy5743 470 DPMYL--RSQIGSVSQEPTL----FSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLS 543 (644)
Q Consensus 470 ~~~~l--r~~i~~V~Q~~~L----f~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LS 543 (644)
..... +..+++++|+... +.+|++||+.... ..+++.++++..++.+. .+.+ -.+||
T Consensus 98 ~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~------~~~~~~~~l~~lgl~~~-------~~~~----~~~LS 160 (538)
T 1yqt_A 98 FEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKAD------ETGKLEEVVKALELENV-------LERE----IQHLS 160 (538)
T ss_dssp HHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHC------SSSCHHHHHHHTTCTTT-------TTSB----GGGCC
T ss_pred HHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhh------HHHHHHHHHHHcCCChh-------hhCC----hhhCC
Confidence 11111 2458899987543 3469999996431 23456777777776433 2233 34699
Q ss_pred hhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhh-cCEEEEEeCC
Q psy5743 544 GGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIRK-SNQICVLDKG 615 (644)
Q Consensus 544 GGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~~-aD~Iivl~~G 615 (644)
||||||++|||||+.+|++||||||||+||+++...+.+.|+++. .++|+|+|||+++.+.. ||+|++|++|
T Consensus 161 gGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 161 GGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGE 234 (538)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCc
Confidence 999999999999999999999999999999999999999998864 47899999999998865 9999999865
No 58
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=8.8e-34 Score=328.92 Aligned_cols=197 Identities=24% Similarity=0.340 Sum_probs=162.7
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcce
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i 478 (644)
.+...|++++|++ +++|+|+||+|++|++++|+||||||||||+++|+| |+| +|.+... +..+
T Consensus 435 ~L~~~~ls~~yg~---~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~~------~~~~ 497 (986)
T 2iw3_A 435 DLCNCEFSLAYGA---KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQE------ECRT 497 (986)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCTT------TSCE
T ss_pred eeEEeeEEEEECC---EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCcccc------ceeE
Confidence 5888899999963 479999999999999999999999999999999996 554 5544321 1247
Q ss_pred EEEecCC-CC-CcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHH
Q psy5743 479 GSVSQEP-TL-FSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARAL 556 (644)
Q Consensus 479 ~~V~Q~~-~L-f~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAl 556 (644)
+|++|++ .+ ..-|++||+.+... .. ++++.++++..++.+.. .+.++ ..||||||||++|||||
T Consensus 498 ~~v~q~~~~~~~~ltv~e~l~~~~~---~~-~~~v~~~L~~lgL~~~~------~~~~~----~~LSGGqkQRvaLArAL 563 (986)
T 2iw3_A 498 VYVEHDIDGTHSDTSVLDFVFESGV---GT-KEAIKDKLIEFGFTDEM------IAMPI----SALSGGWKMKLALARAV 563 (986)
T ss_dssp EETTCCCCCCCTTSBHHHHHHTTCS---SC-HHHHHHHHHHTTCCHHH------HHSBG----GGCCHHHHHHHHHHHHH
T ss_pred EEEcccccccccCCcHHHHHHHhhc---CH-HHHHHHHHHHcCCChhh------hcCCc----ccCCHHHHHHHHHHHHH
Confidence 8999985 33 45699999986211 12 67788888888874211 12222 46999999999999999
Q ss_pred ccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh-hcCEEEEEeCCeEE-EecChhHHhc
Q psy5743 557 IKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIR-KSNQICVLDKGKIV-EIGSYAHLIK 628 (644)
Q Consensus 557 l~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~-~aD~Iivl~~G~iv-e~Gt~~eLl~ 628 (644)
+.+|+|||||||||+||..+...+.+.|++ .++|+|+|||+++.+. .||+|++|++|+++ ..|+++++++
T Consensus 564 ~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 564 LRNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp HTTCSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred hcCCCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence 999999999999999999999999999988 5899999999999985 59999999999997 5899999874
No 59
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.2e-34 Score=336.19 Aligned_cols=219 Identities=29% Similarity=0.445 Sum_probs=165.5
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHH---------HHHhccCCCC------Cc------
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLA---------MLLLRLYDPQ------NG------ 457 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl---------~lL~g~~~p~------~G------ 457 (644)
.+++++++ ...|+||||+|++|++++|+|+||||||||+ +++.+...+. +|
T Consensus 589 ~l~v~~~~--------~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~ 660 (916)
T 3pih_A 589 SLKIKGVR--------HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDK 660 (916)
T ss_dssp EEEEEEEC--------STTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCE
T ss_pred eEEEeeec--------cccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccc
Confidence 46666553 3469999999999999999999999999997 4444443332 33
Q ss_pred EEEECCccCCCCCh----------HHHh-------------------------------cceEEEecCCCCCc-------
Q psy5743 458 KILIDGVDIKELDP----------MYLR-------------------------------SQIGSVSQEPTLFS------- 489 (644)
Q Consensus 458 ~I~idg~~i~~~~~----------~~lr-------------------------------~~i~~V~Q~~~Lf~------- 489 (644)
.|.+|+.++..... +.+| +..|+++|+..++.
T Consensus 661 ~i~idq~pig~~~rs~~at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~ 740 (916)
T 3pih_A 661 MIAIDQSPIGRTPRSNPATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECD 740 (916)
T ss_dssp EEEECSCCCCCCTTCCHHHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECT
T ss_pred eEeeccccccccccccccchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecc
Confidence 36666666643221 1111 23577777766543
Q ss_pred --------------------------ccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCC
Q psy5743 490 --------------------------GTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLS 543 (644)
Q Consensus 490 --------------------------gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LS 543 (644)
.|++||+.|.... ...++..++++.+++ |+ ..+|+.+.+||
T Consensus 741 ~c~g~r~~~e~l~i~~~g~~i~~vl~~tv~eal~f~~~~---~~~~~~~~~L~~vGL---------~~-~~lgq~~~~LS 807 (916)
T 3pih_A 741 VCKGKRYNRETLEITYKGKNISDILDMTVDEALEFFKNI---PSIKRTLQVLHDVGL---------GY-VKLGQPATTLS 807 (916)
T ss_dssp TTTTSCBCTTGGGCCBTTBCHHHHHSSBHHHHHHHTTTC---HHHHHHHHHHHHTTG---------GG-SBTTCCSTTCC
T ss_pred cccccccchhhhhhhhccCCHHHHhhCCHHHHHHHHhcc---hhHHHHHHHHHHcCC---------ch-hhccCCccCCC
Confidence 4778888777432 223444555555554 22 34688999999
Q ss_pred hhHHHHHHHHHHHccCC---CEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhhcCEEEEE------e
Q psy5743 544 GGQKQRIAIARALIKKS---KILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIRKSNQICVL------D 613 (644)
Q Consensus 544 GGQkQRiaLARAll~~p---~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~~aD~Iivl------~ 613 (644)
|||||||+|||||.++| +|||||||||+||+.+++.+++.|.++. +++|+|+|+|+++.++.||+|++| +
T Consensus 808 GGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~ADrIivLgp~gg~~ 887 (916)
T 3pih_A 808 GGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKNADHIIDLGPEGGKE 887 (916)
T ss_dssp HHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGG
T ss_pred HHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEecCCCCCC
Confidence 99999999999999876 7999999999999999999999998874 489999999999999999999999 8
Q ss_pred CCeEEEecChhHHhcCCCcHHHHHH
Q psy5743 614 KGKIVEIGSYAHLIKNPNSMFNKLM 638 (644)
Q Consensus 614 ~G~ive~Gt~~eLl~~~~~~y~~l~ 638 (644)
+|+|++.|+|+|+++.++++...++
T Consensus 888 ~G~Iv~~Gtpeel~~~~~syt~~~l 912 (916)
T 3pih_A 888 GGYIVATGTPEEIAKNPHSYTGRFL 912 (916)
T ss_dssp CCEEEEEESHHHHHSCTTCHHHHHH
T ss_pred CCEEEEEcCHHHHHhCCchHHHHHH
Confidence 9999999999999987544444444
No 60
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-33 Score=315.47 Aligned_cols=197 Identities=22% Similarity=0.328 Sum_probs=153.1
Q ss_pred EEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEE-----------EECCccCCCCChH
Q psy5743 404 NIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI-----------LIDGVDIKELDPM 472 (644)
Q Consensus 404 ~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I-----------~idg~~i~~~~~~ 472 (644)
|++++|..+ ...|++++ ++++||++||+||||||||||+|+|+|+++|++|+| .++|.++..+...
T Consensus 82 ~~~~~Y~~~--~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~ 158 (608)
T 3j16_B 82 HVTHRYSAN--SFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTK 158 (608)
T ss_dssp TEEEECSTT--SCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHH
T ss_pred CeEEEECCC--ceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhH
Confidence 468999642 35678877 689999999999999999999999999999999998 4455555444344
Q ss_pred HHhcceEE--EecCCCC----Cc---ccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCC
Q psy5743 473 YLRSQIGS--VSQEPTL----FS---GTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLS 543 (644)
Q Consensus 473 ~lr~~i~~--V~Q~~~L----f~---gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LS 543 (644)
.+++.+.. .+|.... +. .++.+++..... ..++++.++++..++.+... ..-..||
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~----~~~~~~~~~l~~~gl~~~~~-----------~~~~~LS 223 (608)
T 3j16_B 159 MLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRME----KSPEDVKRYIKILQLENVLK-----------RDIEKLS 223 (608)
T ss_dssp HHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHCC----SCHHHHHHHHHHHTCTGGGG-----------SCTTTCC
T ss_pred HHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhhh----hHHHHHHHHHHHcCCcchhC-----------CChHHCC
Confidence 44444433 3332221 11 267777765422 35678888888888754432 3335799
Q ss_pred hhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC-CceEEEEccCchHHhh-cCEEEEEeCCeEE
Q psy5743 544 GGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE-GKTVLTIAHRLSTIRK-SNQICVLDKGKIV 618 (644)
Q Consensus 544 GGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~-~~TvI~IaHrl~~i~~-aD~Iivl~~G~iv 618 (644)
||||||++|||||+++|++||||||||+||+++...+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|..+
T Consensus 224 gGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~~~~~ 300 (608)
T 3j16_B 224 GGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPSV 300 (608)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEESCTTT
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCccc
Confidence 9999999999999999999999999999999999999999998754 7899999999999864 9999999987543
No 61
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=5.6e-34 Score=316.44 Aligned_cols=193 Identities=20% Similarity=0.301 Sum_probs=153.4
Q ss_pred EEEEEEcCCCCCCccccceeEEEe-CCCEEEEECCCCCcHHHHHHHHhccCCCCCcEE-----------EECCccCCCCC
Q psy5743 403 NNIRFSYPSRPDAVILNDLSLKIQ-SGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI-----------LIDGVDIKELD 470 (644)
Q Consensus 403 ~~vsf~Y~~~~~~~vL~~isl~i~-~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I-----------~idg~~i~~~~ 470 (644)
++++.+|..+ -++-..|.++ +||++||+||||||||||+|+|+|+++|++|+| .++|.++..+.
T Consensus 3 ~~~~~~~~~~----~f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~ 78 (538)
T 3ozx_A 3 GEVIHRYKVN----GFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYF 78 (538)
T ss_dssp CCEEEESSTT----SCEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHH
T ss_pred CCCceecCCC----ceeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHH
Confidence 3567889753 2455556555 899999999999999999999999999999999 67887765432
Q ss_pred hHHH------hcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCCh
Q psy5743 471 PMYL------RSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSG 544 (644)
Q Consensus 471 ~~~l------r~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSG 544 (644)
.... +..+.++.|.+.++.+|+++++.... ..+++.++++..++.+. .+..+ ..|||
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~------~~~~~~~~l~~l~l~~~-------~~~~~----~~LSg 141 (538)
T 3ozx_A 79 KELYSNELKIVHKIQYVEYASKFLKGTVNEILTKID------ERGKKDEVKELLNMTNL-------WNKDA----NILSG 141 (538)
T ss_dssp HHHHTTCCCEEEECSCTTGGGTTCCSBHHHHHHHHC------CSSCHHHHHHHTTCGGG-------TTSBG----GGCCH
T ss_pred HHHhhcccchhhccchhhhhhhhccCcHHHHhhcch------hHHHHHHHHHHcCCchh-------hcCCh----hhCCH
Confidence 2222 22355666777788899999886432 23456667777776443 23333 46999
Q ss_pred hHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh-hcCEEEEEeCCe
Q psy5743 545 GQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIR-KSNQICVLDKGK 616 (644)
Q Consensus 545 GQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~-~aD~Iivl~~G~ 616 (644)
|||||++|||||+++|+|||||||||+||+.+...+.+.|+++.+++|+|+|||+++.+. .||+|++|++|.
T Consensus 142 Ge~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~~~~~~~d~i~vl~~~~ 214 (538)
T 3ozx_A 142 GGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGES 214 (538)
T ss_dssp HHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCHHHHHHHCSEEEEEEEET
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeChHHHHhhCCEEEEecCCc
Confidence 999999999999999999999999999999999999999999878999999999999875 599999998754
No 62
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.98 E-value=3.1e-32 Score=313.52 Aligned_cols=211 Identities=25% Similarity=0.396 Sum_probs=157.6
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHH-HhccC-------CC---------------
Q psy5743 398 GEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAML-LLRLY-------DP--------------- 454 (644)
Q Consensus 398 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~l-L~g~~-------~p--------------- 454 (644)
..|+++|+++. .|+||||+|++|+++||+|+||||||||++. |.|++ .|
T Consensus 501 ~~L~v~~l~~~--------~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~ 572 (842)
T 2vf7_A 501 GWLELNGVTRN--------NLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAG 572 (842)
T ss_dssp CEEEEEEEEET--------TEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------C
T ss_pred ceEEEEeeeec--------ccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccccc
Confidence 35999999861 5999999999999999999999999999996 66553 22
Q ss_pred ---CCc-------EEEECCccCCCCCh----------HHHhcceEEEe---------cC---------------------
Q psy5743 455 ---QNG-------KILIDGVDIKELDP----------MYLRSQIGSVS---------QE--------------------- 484 (644)
Q Consensus 455 ---~~G-------~I~idg~~i~~~~~----------~~lr~~i~~V~---------Q~--------------------- 484 (644)
.+| .|.+||.++..... +.+|+.++++| +.
T Consensus 573 ~~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~ 652 (842)
T 2vf7_A 573 SARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMV 652 (842)
T ss_dssp CCEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEE
T ss_pred cccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccch
Confidence 467 78999998865432 34444333222 11
Q ss_pred -CCCC-------------------------cccHHHHHh--------cCCCCCCCCCHHHHHHHHHHHhhccchhhhhcC
Q psy5743 485 -PTLF-------------------------SGTIYENIL--------YGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNG 530 (644)
Q Consensus 485 -~~Lf-------------------------~gTIreNI~--------~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G 530 (644)
-..+ .-||.||+. +.... ...+++.+++ +.+ |
T Consensus 653 ~~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~~---~~~~~~~~~L---------~~~--g 718 (842)
T 2vf7_A 653 ELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFADE---SAIFRALDTL---------REV--G 718 (842)
T ss_dssp TTCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTTS---HHHHHHHHHH---------HHT--T
T ss_pred hhhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhhcc---hHHHHHHHHH---------HHc--C
Confidence 1111 125555553 33110 0111222233 333 3
Q ss_pred ccc-cccCCCCCCChhHHHHHHHHHHHccC---CCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhh
Q psy5743 531 FDT-IVGERGIMLSGGQKQRIAIARALIKK---SKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIRK 605 (644)
Q Consensus 531 l~T-~ige~G~~LSGGQkQRiaLARAll~~---p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~~ 605 (644)
+.. ..+.....||||||||++|||||.++ |+||||||||++||..+.+.+.+.|+++. .++|+|+|||+++.++.
T Consensus 719 L~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i~~ 798 (842)
T 2vf7_A 719 LGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVVAA 798 (842)
T ss_dssp CTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTT
T ss_pred CCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHh
Confidence 433 35777889999999999999999996 79999999999999999999999998874 58999999999999999
Q ss_pred cCEEEEE------eCCeEEEecChhHHhcCC
Q psy5743 606 SNQICVL------DKGKIVEIGSYAHLIKNP 630 (644)
Q Consensus 606 aD~Iivl------~~G~ive~Gt~~eLl~~~ 630 (644)
||+|++| ++|+|++.|+++++++.+
T Consensus 799 aDrii~L~p~~g~~~G~Iv~~g~~~el~~~~ 829 (842)
T 2vf7_A 799 SDWVLDIGPGAGEDGGRLVAQGTPAEVAQAA 829 (842)
T ss_dssp CSEEEEECSSSGGGCCSEEEEECHHHHTTCT
T ss_pred CCEEEEECCCCCCCCCEEEEEcCHHHHHhCc
Confidence 9999999 699999999999998754
No 63
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.97 E-value=2.9e-32 Score=295.94 Aligned_cols=201 Identities=16% Similarity=0.200 Sum_probs=157.3
Q ss_pred cccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCC--------------------------------------CCCcE
Q psy5743 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD--------------------------------------PQNGK 458 (644)
Q Consensus 417 vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~--------------------------------------p~~G~ 458 (644)
.++++||++++| +++|+||||||||||+++|.++.. +.+|+
T Consensus 50 ~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~~ 128 (415)
T 4aby_A 50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRGA 128 (415)
T ss_dssp TEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCEE
T ss_pred ceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCceE
Confidence 689999999999 999999999999999999977664 45789
Q ss_pred EEECCccCCCCChHHHhcc-eEEEecCCCCCcccHHHHHhcCCCCCCCCCH-----------------------------
Q psy5743 459 ILIDGVDIKELDPMYLRSQ-IGSVSQEPTLFSGTIYENILYGVNDSSSVTK----------------------------- 508 (644)
Q Consensus 459 I~idg~~i~~~~~~~lr~~-i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~----------------------------- 508 (644)
+++||.+++..+..++++. +++++|++.++-.+-.++..+-+.. ...
T Consensus 129 i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~~~~~~r~~ld~~---~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~ 205 (415)
T 4aby_A 129 ARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLLSPANQRGLLDRR---VTKEAQAYAAAHAAWREAVSRLERLQASESSK 205 (415)
T ss_dssp EEETTEEECHHHHHHHHTTTEEEETTTCTTTTSSHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred EEECCEECCHHHHHHHHhhceEEecCcccccccCHHHHHHHHHHH---hccChHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 9999999988778888887 8999999999888777666554321 110
Q ss_pred -------------------------------------HHHHHHHHHHhhcc--chhh-------hhcCccc---cccCCC
Q psy5743 509 -------------------------------------SDIIHAAKEANAYG--FVID-------FKNGFDT---IVGERG 539 (644)
Q Consensus 509 -------------------------------------~~i~~a~~~a~l~~--~i~~-------lp~Gl~T---~ige~G 539 (644)
+++.+.++..++.+ +... -+.|.+. .++.++
T Consensus 206 ~~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 285 (415)
T 4aby_A 206 HPTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANP 285 (415)
T ss_dssp ----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSS
T ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCC
Confidence 00111111111110 0000 0123333 455555
Q ss_pred CC--------CChhHHHHHHHHHHHccCC--CEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEE
Q psy5743 540 IM--------LSGGQKQRIAIARALIKKS--KILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQI 609 (644)
Q Consensus 540 ~~--------LSGGQkQRiaLARAll~~p--~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~I 609 (644)
.. ||||||||++|||+|+.+| ++||||||||+||+++...+.+.|+++.+++|+|+|||+++.+..||+|
T Consensus 286 ~~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~~~d~i 365 (415)
T 4aby_A 286 GEELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHH 365 (415)
T ss_dssp SCCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEE
T ss_pred CCcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHhhcCeE
Confidence 44 8999999999999999999 9999999999999999999999999987789999999999999999999
Q ss_pred EEE----eCCeEEEec
Q psy5743 610 CVL----DKGKIVEIG 621 (644)
Q Consensus 610 ivl----~~G~ive~G 621 (644)
++| ++|+++...
T Consensus 366 ~~l~k~~~~G~~~~~~ 381 (415)
T 4aby_A 366 YKVEKQVEDGRTVSHV 381 (415)
T ss_dssp EEEEEEEETTEEEEEE
T ss_pred EEEEEeccCCceEEEE
Confidence 999 999987653
No 64
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.97 E-value=7.5e-36 Score=325.06 Aligned_cols=194 Identities=15% Similarity=0.110 Sum_probs=154.7
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCc-E-EEECCccCCCCChHHHhc
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNG-K-ILIDGVDIKELDPMYLRS 476 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G-~-I~idg~~i~~~~~~~lr~ 476 (644)
-++++||+|+|+ ++||++++|++++|+||||||||||+|+|+|++.|++| + |++|| + .|+
T Consensus 118 mi~~~nl~~~y~---------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg-~--------~~~ 179 (460)
T 2npi_A 118 MKYIYNLHFMLE---------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL-D--------PQQ 179 (460)
T ss_dssp HHHHHHHHHHHH---------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC-C--------TTS
T ss_pred hhhhhhhhehhh---------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC-C--------ccC
Confidence 366677777662 79999999999999999999999999999999999999 9 99998 1 377
Q ss_pred ceEEEecCCCCCc----ccHHHHHhcCCCC-CCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHH
Q psy5743 477 QIGSVSQEPTLFS----GTIYENILYGVND-SSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIA 551 (644)
Q Consensus 477 ~i~~V~Q~~~Lf~----gTIreNI~~g~~~-~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRia 551 (644)
.+++|||++.+|. .|++||+ ++... .....++++.++++.. |++.... ..+||||||||++
T Consensus 180 ~i~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~~~~~~~~~ll~~~-----------gl~~~~~--~~~LSgGq~qrla 245 (460)
T 2npi_A 180 PIFTVPGCISATPISDILDAQLPT-WGQSLTSGATLLHNKQPMVKNF-----------GLERINE--NKDLYLECISQLG 245 (460)
T ss_dssp CSSSCSSCCEEEECCSCCCTTCTT-CSCBCBSSCCSSCCBCCEECCC-----------CSSSGGG--CHHHHHHHHHHHH
T ss_pred Ceeeeccchhhcccccccchhhhh-cccccccCcchHHHHHHHHHHh-----------CCCcccc--hhhhhHHHHHHHH
Confidence 8999999996554 5899999 76431 0001111111111111 4554443 6789999999999
Q ss_pred HHHH--HccCCCE----EEeec-ccCCCCHHHHHHHHHHHHHHcCCceEEEEccCch------HH-hhcCE-----EEEE
Q psy5743 552 IARA--LIKKSKI----LLLDE-ATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLS------TI-RKSNQ-----ICVL 612 (644)
Q Consensus 552 LARA--ll~~p~I----liLDE-aTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~------~i-~~aD~-----Iivl 612 (644)
|||| |..+|++ ||||| |||+||.. ...+.+.+++. ++|+|+|+|+.+ .+ ..||+ |++|
T Consensus 246 lAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~--~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l 322 (460)
T 2npi_A 246 QVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKL--NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFI 322 (460)
T ss_dssp HHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHT--TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEE
T ss_pred HHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHHh--CCCEEEEEccCchhhhHHHHHHhcccccCCEEEEE
Confidence 9999 9999999 99999 99999999 77777777665 789999999987 33 56999 9999
Q ss_pred e-CCeEEEecChhHHhc
Q psy5743 613 D-KGKIVEIGSYAHLIK 628 (644)
Q Consensus 613 ~-~G~ive~Gt~~eLl~ 628 (644)
+ +|+|+ .|+++++.+
T Consensus 323 ~k~G~iv-~g~~~~~~~ 338 (460)
T 2npi_A 323 PKLDGVS-AVDDVYKRS 338 (460)
T ss_dssp CCCTTCC-CCCHHHHHH
T ss_pred eCCCcEE-ECCHHHHhh
Confidence 9 99999 999998853
No 65
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.97 E-value=1e-31 Score=308.99 Aligned_cols=210 Identities=28% Similarity=0.414 Sum_probs=158.0
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHh-cc----CC---CCCc-------------
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLL-RL----YD---PQNG------------- 457 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~-g~----~~---p~~G------------- 457 (644)
.++++|++. ..|+||||+|++|+++||+|+||||||||++.++ |. +. +..|
T Consensus 629 ~L~v~~l~~--------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~ 700 (972)
T 2r6f_A 629 WLEVVGARE--------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDK 700 (972)
T ss_dssp EEEEEEECS--------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSE
T ss_pred EEEEecCcc--------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccce
Confidence 589999852 2599999999999999999999999999999864 22 11 2333
Q ss_pred EEEECCccCCCCC---hH-------HHh---------cceEEEecCCCC---------------------C---------
Q psy5743 458 KILIDGVDIKELD---PM-------YLR---------SQIGSVSQEPTL---------------------F--------- 488 (644)
Q Consensus 458 ~I~idg~~i~~~~---~~-------~lr---------~~i~~V~Q~~~L---------------------f--------- 488 (644)
.|.+||.++..-. +. ..| +..||++|...+ |
T Consensus 701 ~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce 780 (972)
T 2r6f_A 701 VIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCE 780 (972)
T ss_dssp EEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECT
T ss_pred EEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhcccccccccc
Confidence 4889998885322 21 112 346888885321 0
Q ss_pred -------------------------cccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccc-cccCCCCCC
Q psy5743 489 -------------------------SGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDT-IVGERGIML 542 (644)
Q Consensus 489 -------------------------~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T-~ige~G~~L 542 (644)
+-|+.||+.|+... ...++..++ ++.+ |+.. ..+.....|
T Consensus 781 ~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~~---~~~~~~~~~---------L~~~--gL~~~~l~~~~~~L 846 (972)
T 2r6f_A 781 VCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFASI---PKIKRKLET---------LYDV--GLGYMKLGQPATTL 846 (972)
T ss_dssp TTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCSC---HHHHHHHHH---------HHHT--TCSSSBTTCCGGGC
T ss_pred ccccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhcc---hhHHHHHHH---------HHHc--CCCcccccCchhhC
Confidence 12566666665321 001112222 2332 4544 467778899
Q ss_pred ChhHHHHHHHHHHHccCC---CEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhhcCEEEEE------
Q psy5743 543 SGGQKQRIAIARALIKKS---KILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIRKSNQICVL------ 612 (644)
Q Consensus 543 SGGQkQRiaLARAll~~p---~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~~aD~Iivl------ 612 (644)
|||||||++|||||.++| ++|||||||++||..+.+.+.+.|.++. .++|+|+|||+++.+..||+|++|
T Consensus 847 SGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gG~ 926 (972)
T 2r6f_A 847 SGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGD 926 (972)
T ss_dssp CHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEECSSSTT
T ss_pred CHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEEcCCCCC
Confidence 999999999999999875 9999999999999999999999998874 589999999999999999999999
Q ss_pred eCCeEEEecChhHHhcCC
Q psy5743 613 DKGKIVEIGSYAHLIKNP 630 (644)
Q Consensus 613 ~~G~ive~Gt~~eLl~~~ 630 (644)
++|+|++.|+++++.+.+
T Consensus 927 ~~G~Iv~~g~~~el~~~~ 944 (972)
T 2r6f_A 927 RGGQIVAVGTPEEVAEVK 944 (972)
T ss_dssp SCCSEEEEESHHHHHTCT
T ss_pred CCCEEEEecCHHHHHhCc
Confidence 789999999999998753
No 66
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.97 E-value=4.2e-31 Score=305.08 Aligned_cols=211 Identities=28% Similarity=0.395 Sum_probs=156.2
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHh-c----cCC---CCCcE------------
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLL-R----LYD---PQNGK------------ 458 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~-g----~~~---p~~G~------------ 458 (644)
.++++|++. .+|+||||+|++|+++||+|+||||||||+++++ | .+. +..|.
T Consensus 647 ~L~v~~l~~--------~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~~~~ 718 (993)
T 2ygr_A 647 QLTVVGARE--------HNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDYLDK 718 (993)
T ss_dssp EEEEEEECS--------TTCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTTCSE
T ss_pred eEEEecCcc--------ccccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCccccce
Confidence 589999852 2699999999999999999999999999999854 2 222 23343
Q ss_pred -EEECCccCCCC---ChH-------HH---------hcceEEEecCCCC---------------------C---------
Q psy5743 459 -ILIDGVDIKEL---DPM-------YL---------RSQIGSVSQEPTL---------------------F--------- 488 (644)
Q Consensus 459 -I~idg~~i~~~---~~~-------~l---------r~~i~~V~Q~~~L---------------------f--------- 488 (644)
|.+|+.++... ++. .. .+..||++|...+ |
T Consensus 719 ~i~idq~pig~~~rs~paty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~~ce 798 (993)
T 2ygr_A 719 LVRIDQSPIGRTPRSNPATYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYVPCE 798 (993)
T ss_dssp EECCCCSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEEECT
T ss_pred EEEecCcccccCcccchhhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhccccceeeeh
Confidence 56677676422 111 11 2346777775321 0
Q ss_pred -------------------------cccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccc-cccCCCCCC
Q psy5743 489 -------------------------SGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDT-IVGERGIML 542 (644)
Q Consensus 489 -------------------------~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T-~ige~G~~L 542 (644)
+-|+.||+.|.... ...++..++ +..+ |+.. ..+.....|
T Consensus 799 ~c~G~r~~~e~l~v~~~g~si~dvl~ltv~e~l~~~~~~---~~~~~~~~~---------L~~l--gL~~~~l~~~~~~L 864 (993)
T 2ygr_A 799 VCQGARYNRETLEVHYKGKTVSEVLDMSIEEAAEFFEPI---AGVHRYLRT---------LVDV--GLGYVRLGQPAPTL 864 (993)
T ss_dssp TTTTCSBCGGGGGCCBTTBCHHHHHSSBHHHHHHHSTTC---HHHHHHHHH---------HHHT--TGGGSBTTCCGGGS
T ss_pred hccccccchhhhhhhccCCCHHHHhhccHHHHHHHhhcc---hHHHHHHHH---------HHHc--CCCcccccCccccC
Confidence 12455566554211 001112222 2332 4444 567788899
Q ss_pred ChhHHHHHHHHHHHccCC---CEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhhcCEEEEE------
Q psy5743 543 SGGQKQRIAIARALIKKS---KILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIRKSNQICVL------ 612 (644)
Q Consensus 543 SGGQkQRiaLARAll~~p---~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~~aD~Iivl------ 612 (644)
|||||||++|||||+++| ++|||||||++||..+.+.+.+.|.++. .++|+|+|||+++.++.||+|++|
T Consensus 865 SGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gg~ 944 (993)
T 2ygr_A 865 SGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLDVIKTSDWIIDLGPEGGA 944 (993)
T ss_dssp CHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSTT
T ss_pred CHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEECCCcCC
Confidence 999999999999999875 9999999999999999999999998874 589999999999999999999999
Q ss_pred eCCeEEEecChhHHhcCCC
Q psy5743 613 DKGKIVEIGSYAHLIKNPN 631 (644)
Q Consensus 613 ~~G~ive~Gt~~eLl~~~~ 631 (644)
++|+|++.|+++++.+.+.
T Consensus 945 ~~G~Iv~~G~~~el~~~~~ 963 (993)
T 2ygr_A 945 GGGTVVAQGTPEDVAAVPA 963 (993)
T ss_dssp SCSEEEEEECHHHHHHCTT
T ss_pred CCCEEEEecCHHHHHhCCH
Confidence 6899999999999987643
No 67
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.96 E-value=1.5e-29 Score=265.00 Aligned_cols=206 Identities=16% Similarity=0.190 Sum_probs=147.7
Q ss_pred ceeEEEeCCCEEEEECCCCCcHHHHHHHHhccC-----------------------------------------------
Q psy5743 420 DLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLY----------------------------------------------- 452 (644)
Q Consensus 420 ~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~----------------------------------------------- 452 (644)
++++++.+| .++|+||||||||||+++|..++
T Consensus 17 ~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v~~~f~~~~~~~~i~r 95 (322)
T 1e69_A 17 PSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFEENGEEITVAR 95 (322)
T ss_dssp CEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEEEEEEESSSCEEEEEE
T ss_pred CeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEEEEEEEEeCCeEEEEEE
Confidence 578888899 99999999999999999998443
Q ss_pred ---CCCCcEEEECCccCCCCChHHHhcceEEEecCCCCC-cccHHHHHhcCCCCCCCC------------CHHHHHHHHH
Q psy5743 453 ---DPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLF-SGTIYENILYGVNDSSSV------------TKSDIIHAAK 516 (644)
Q Consensus 453 ---~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf-~gTIreNI~~g~~~~~~~------------~~~~i~~a~~ 516 (644)
.+.+|.+++||.+++..+...+...+++.+|+..++ .|+|.+|+.....+.... +.+++.+...
T Consensus 96 ~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~p~~rr~~ld~~~~~~~~~~~y~rv~e~~~ 175 (322)
T 1e69_A 96 ELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNASPEELRLESSKHPTSLVPRGSYQRVNESFN 175 (322)
T ss_dssp EEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC---------------------CHHHHHHHH
T ss_pred EEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 345679999999987666777777899999998766 899999997642110000 1112222211
Q ss_pred HHh------------h-ccchhhhhcCccccccC------CCCCCChhHHHHHHHHHHHc----cCCCEEEeecccCCCC
Q psy5743 517 EAN------------A-YGFVIDFKNGFDTIVGE------RGIMLSGGQKQRIAIARALI----KKSKILLLDEATSALD 573 (644)
Q Consensus 517 ~a~------------l-~~~i~~lp~Gl~T~ige------~G~~LSGGQkQRiaLARAll----~~p~IliLDEaTSaLD 573 (644)
..- + .+....++.|+++.++. ....||||||||++|||||. ++|++||||||||+||
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD 255 (322)
T 1e69_A 176 RFISLLFFGGEGRLNIVSEAKSILDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLD 255 (322)
T ss_dssp HHHHHHHTSCEEEC--------------CCEEECTTSCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCC
T ss_pred HHHHHhcCCceEEEEeeccccccccCCeEEEEecCccccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCC
Confidence 110 0 00112356677776543 34689999999999999995 7899999999999999
Q ss_pred HHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEE--EEEeCCeE-EEecChhHH
Q psy5743 574 AENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQI--CVLDKGKI-VEIGSYAHL 626 (644)
Q Consensus 574 ~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~I--ivl~~G~i-ve~Gt~~eL 626 (644)
+.+...+.+.|.++.+++|+|+|||+++.+..||++ ++|++|+. +...+-+|.
T Consensus 256 ~~~~~~l~~~l~~~~~~~~vi~~tH~~~~~~~~d~~~~v~~~~g~s~~~~~~~~~~ 311 (322)
T 1e69_A 256 DYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVNGVSAIVPVEVEKI 311 (322)
T ss_dssp HHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEESSSCEEEEECCC---
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEECCHHHHhhCceEEEEEEeCCEEEEEEEEcchh
Confidence 999999999999987788999999999988999987 88888854 344444443
No 68
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.95 E-value=1.4e-30 Score=254.76 Aligned_cols=155 Identities=16% Similarity=0.179 Sum_probs=102.9
Q ss_pred CccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHH
Q psy5743 415 AVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYE 494 (644)
Q Consensus 415 ~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIre 494 (644)
..+|+|| ++||+++|+||||||||||+++|+|+ +|++|+|. +.++.. +...+|+.++||+|++ +|
T Consensus 13 ~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~--~~~~~~-~~~~~~~~ig~v~q~~-------~e 77 (208)
T 3b85_A 13 KHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVS--RIILTR-PAVEAGEKLGFLPGTL-------NE 77 (208)
T ss_dssp HHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCS--EEEEEE-CSCCTTCCCCSSCC-----------
T ss_pred HHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeee--eEEecC-CchhhhcceEEecCCH-------HH
Confidence 4689995 89999999999999999999999999 99999994 333321 2234678899999998 67
Q ss_pred HH-hcCCCC----CCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeeccc
Q psy5743 495 NI-LYGVND----SSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEAT 569 (644)
Q Consensus 495 NI-~~g~~~----~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaT 569 (644)
|+ .++.+. ....+.+++.++++. |+ |||||++|||||+.+|++|||||||
T Consensus 78 nl~~~~~~~~~~~~~~~~~~~~~~~l~~------------gl-------------Gq~qrv~lAraL~~~p~lllLDEPt 132 (208)
T 3b85_A 78 KIDPYLRPLHDALRDMVEPEVIPKLMEA------------GI-------------VEVAPLAYMRGRTLNDAFVILDEAQ 132 (208)
T ss_dssp --CTTTHHHHHHHTTTSCTTHHHHHHHT------------TS-------------EEEEEGGGGTTCCBCSEEEEECSGG
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHh------------CC-------------chHHHHHHHHHHhcCCCEEEEeCCc
Confidence 77 443110 000011111111111 11 9999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeE
Q psy5743 570 SALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKI 617 (644)
Q Consensus 570 SaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~i 617 (644)
|+ +...+.+.|.++.+++|+| |||+++.+. ++...++|..
T Consensus 133 s~----~~~~l~~~l~~l~~g~tii-vtHd~~~~~---~~~~~~~G~~ 172 (208)
T 3b85_A 133 NT----TPAQMKMFLTRLGFGSKMV-VTGDITQVD---LPGGQKSGLR 172 (208)
T ss_dssp GC----CHHHHHHHHTTBCTTCEEE-EEEC---------------CCH
T ss_pred cc----cHHHHHHHHHHhcCCCEEE-EECCHHHHh---CcCCCCCcHH
Confidence 99 8888999898874578888 999988654 4555667754
No 69
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.95 E-value=9.6e-32 Score=281.68 Aligned_cols=206 Identities=16% Similarity=0.149 Sum_probs=150.3
Q ss_pred CcCHhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCccCCCCCc-cCCCCCccEE---------E
Q psy5743 334 TITVGNLSSFLLYAAYIGISIGGLSN-FYSELNKGLGACHRLWEIMEREPLISTSGGKF-FSHSLKGEID---------F 402 (644)
Q Consensus 334 ~~t~g~l~a~~~~~~~~~~~l~~l~~-~~~~~~~~~~s~~Rl~~~l~~~~~~~~~~~~~-~~~~~~~~I~---------~ 402 (644)
.+|.|.+.+++.+...+..| .+.. ....+..+..+.+|+.++++.|... ...... ......+.++ +
T Consensus 75 ~lt~~~l~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~Ri~~~l~~p~~~-~~~~~~~ir~~~~~~i~l~~l~~~g~~ 151 (330)
T 2pt7_A 75 AFSLSRLMHFARCCASFKKK--TIDNYENPILSSNLANGERVQIVLSPVTVN-DETISISIRIPSKTTYPHSFFEEQGFY 151 (330)
T ss_dssp GGSHHHHHHHHHHHHHHTTC--CCCSSSCCEEEEECTTSCEEEEECTTTSSS-TTCCEEEEECCCCCCCCHHHHHHTTTT
T ss_pred CCCHHHHHHHHHHHHHHhCC--CCCCCCCeeEEEEcCCCcEEEEEEcCCccC-CCCceEEEeCCCCCCCCHHHHHhCCCc
Confidence 68999999998887766554 2322 2223333334556877777543321 110010 0011123455 7
Q ss_pred EEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEe
Q psy5743 403 NNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVS 482 (644)
Q Consensus 403 ~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~ 482 (644)
+|++| | +++++++|+++++|+.++|+||||||||||+++|+|+++|++|.|.++|.+ ++....+++.+++++
T Consensus 152 ~~v~f-y-----~~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~--e~~~~~~~~~i~~~~ 223 (330)
T 2pt7_A 152 NLLDN-K-----EQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTE--EIVFKHHKNYTQLFF 223 (330)
T ss_dssp TTSTT-H-----HHHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSC--CCCCSSCSSEEEEEC
T ss_pred Cchhh-H-----HHHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCee--ccccccchhEEEEEe
Confidence 77777 7 258999999999999999999999999999999999999999999999975 333333444455442
Q ss_pred cCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCE
Q psy5743 483 QEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKI 562 (644)
Q Consensus 483 Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~I 562 (644)
| |||+||++|||||.++|++
T Consensus 224 -----------------------------------------------------g-------gg~~~r~~la~aL~~~p~i 243 (330)
T 2pt7_A 224 -----------------------------------------------------G-------GNITSADCLKSCLRMRPDR 243 (330)
T ss_dssp -----------------------------------------------------B-------TTBCHHHHHHHHTTSCCSE
T ss_pred -----------------------------------------------------C-------CChhHHHHHHHHhhhCCCE
Confidence 0 8999999999999999999
Q ss_pred EEeecccCCCCHHHHHHHHHHHHHHcCCc-eEEEEccCchHHhhcCEEEEEeCCeE
Q psy5743 563 LLLDEATSALDAENEYLVQSAIEKLIEGK-TVLTIAHRLSTIRKSNQICVLDKGKI 617 (644)
Q Consensus 563 liLDEaTSaLD~~~e~~i~~~l~~~~~~~-TvI~IaHrl~~i~~aD~Iivl~~G~i 617 (644)
++|||||+. .+.+.|+.+..++ |+|+++|+++....||||++|++|+.
T Consensus 244 lildE~~~~-------e~~~~l~~~~~g~~tvi~t~H~~~~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 244 IILGELRSS-------EAYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLANMSSSNS 292 (330)
T ss_dssp EEECCCCST-------HHHHHHHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHTSG
T ss_pred EEEcCCChH-------HHHHHHHHHhcCCCEEEEEEcccHHHHHhhhheehhcCCc
Confidence 999999992 2455666665565 79999999999999999999998863
No 70
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.95 E-value=7.4e-31 Score=259.44 Aligned_cols=165 Identities=19% Similarity=0.164 Sum_probs=124.4
Q ss_pred cccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCCh-HHHhcceEEEecCCCCC-------
Q psy5743 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDP-MYLRSQIGSVSQEPTLF------- 488 (644)
Q Consensus 417 vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~-~~lr~~i~~V~Q~~~Lf------- 488 (644)
.|+||||++++|++++|+||||||||||+++|+|++ | |+|.+ |.++....+ ...++.++|++|++.+|
T Consensus 12 ~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 87 (218)
T 1z6g_A 12 SGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNE 87 (218)
T ss_dssp ----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHTT
T ss_pred cccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhcc
Confidence 589999999999999999999999999999999999 6 99999 888765433 33567899999987555
Q ss_pred ----cccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHH-----HHHHccC
Q psy5743 489 ----SGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAI-----ARALIKK 559 (644)
Q Consensus 489 ----~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaL-----ARAll~~ 559 (644)
.+++++| .+|. .++++.++++.... ..+. ..|||||+||++| ||+++++
T Consensus 88 ~~l~~~~~~~~-~~g~------~~~~i~~~l~~~~~------------~il~---~~lsggq~qR~~i~~~~~~~~ll~~ 145 (218)
T 1z6g_A 88 DFLEYDNYANN-FYGT------LKSEYDKAKEQNKI------------CLFE---MNINGVKQLKKSTHIKNALYIFIKP 145 (218)
T ss_dssp CEEEEEEETTE-EEEE------EHHHHHHHHHTTCE------------EEEE---ECHHHHHHHTTCSSCCSCEEEEEEC
T ss_pred chhhhhhcccc-cCCC------cHHHHHHHHhCCCc------------EEEE---ecHHHHHHHHHHhcCCCcEEEEEeC
Confidence 3455555 4442 24556666554321 1221 6799999999999 9999999
Q ss_pred CCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeC
Q psy5743 560 SKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDK 614 (644)
Q Consensus 560 p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~ 614 (644)
|++++|||||+++|.++|..|.+.+.+..+++| ++| +..||.|+|+++
T Consensus 146 ~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~~~~---~~h----~~~~d~iiv~~~ 193 (218)
T 1z6g_A 146 PSTDVLLSRLLTRNTENQEQIQKRMEQLNIELH---EAN----LLNFNLSIINDD 193 (218)
T ss_dssp SCHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHH---HHT----TSCCSEEEECSS
T ss_pred cCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH---hhc----ccCCCEEEECCC
Confidence 999999999999999999999999988777777 788 578999988865
No 71
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.93 E-value=1.7e-27 Score=226.24 Aligned_cols=150 Identities=21% Similarity=0.241 Sum_probs=109.4
Q ss_pred ceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCC--CCcccHHHHHh
Q psy5743 420 DLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPT--LFSGTIYENIL 497 (644)
Q Consensus 420 ~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~--Lf~gTIreNI~ 497 (644)
|+||++++||+++|+||||||||||++++.+-. ..+ +.+.+| ++++|++. .+.++..+++.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~------~~~--------~~d~~~---g~~~~~~~~~~~~~~~~~~~~ 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPT------EVI--------SSDFCR---GLMSDDENDQTVTGAAFDVLH 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGG------GEE--------EHHHHH---HHHCSSTTCGGGHHHHHHHHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCC------eEE--------ccHHHH---HHhcCcccchhhHHHHHHHHH
Confidence 689999999999999999999999999965322 222 233344 67778753 22333333221
Q ss_pred cCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHH
Q psy5743 498 YGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENE 577 (644)
Q Consensus 498 ~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e 577 (644)
... ...+..|+.+.+... ...|||||||++||||+..+|++++|||||++||+.++
T Consensus 64 ---------------~~~--------~~~~~~g~~~~~~~~-~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~ 119 (171)
T 4gp7_A 64 ---------------YIV--------SKRLQLGKLTVVDAT-NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNK 119 (171)
T ss_dssp ---------------HHH--------HHHHHTTCCEEEESC-CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHH
T ss_pred ---------------HHH--------HHHHhCCCeEEEECC-CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHh
Confidence 111 122345666655544 34599999999999999999999999999999999955
Q ss_pred ----------------HHHHHHHHHHc-CCceEEEEccCchHHhhcCEEE
Q psy5743 578 ----------------YLVQSAIEKLI-EGKTVLTIAHRLSTIRKSNQIC 610 (644)
Q Consensus 578 ----------------~~i~~~l~~~~-~~~TvI~IaHrl~~i~~aD~Ii 610 (644)
+.+.+.|+++. ++.|+|+|||+++.+..++++.
T Consensus 120 ~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~~~~~~ 169 (171)
T 4gp7_A 120 NRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEEVVFER 169 (171)
T ss_dssp TCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHHEEEEE
T ss_pred cccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhhhhhcc
Confidence 77777765543 4899999999999998887753
No 72
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.93 E-value=1.3e-25 Score=238.61 Aligned_cols=83 Identities=25% Similarity=0.342 Sum_probs=76.1
Q ss_pred CCCCCCChhHHHHHHHHHHHc------cCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhhcCEE
Q psy5743 537 ERGIMLSGGQKQRIAIARALI------KKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIRKSNQI 609 (644)
Q Consensus 537 e~G~~LSGGQkQRiaLARAll------~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~~aD~I 609 (644)
....+||||||||++|||||. .+|++|||||||++||+.+...+.+.|.++. .++|+|+|||+++....||+|
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d~~ 354 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFDRK 354 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCSCE
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEE
Confidence 345679999999999999998 7999999999999999999999999998874 479999999999999999999
Q ss_pred EEEeCCeEEE
Q psy5743 610 CVLDKGKIVE 619 (644)
Q Consensus 610 ivl~~G~ive 619 (644)
++|++|++++
T Consensus 355 ~~l~~G~i~~ 364 (365)
T 3qf7_A 355 LRITGGVVVN 364 (365)
T ss_dssp EEEETTEEC-
T ss_pred EEEECCEEEe
Confidence 9999999975
No 73
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.93 E-value=7.3e-28 Score=229.83 Aligned_cols=147 Identities=16% Similarity=0.196 Sum_probs=109.6
Q ss_pred EEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHH
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKS 509 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~ 509 (644)
+++|+||||||||||+++|+|++. |.++|.+..+......+++++|++|++ |..+|+ ++.-
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~-----~~~~~~-~~~~-------- 62 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITT-----EGKKKI-FSSK-------- 62 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEET-----TCCEEE-EEET--------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecC-----cHHHHH-HHhh--------
Confidence 689999999999999999999995 567787665443225678999999987 223333 1100
Q ss_pred HHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHH-----HccCCCEEEeec--ccCCCCHHHHHHHHH
Q psy5743 510 DIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARA-----LIKKSKILLLDE--ATSALDAENEYLVQS 582 (644)
Q Consensus 510 ~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARA-----ll~~p~IliLDE--aTSaLD~~~e~~i~~ 582 (644)
+ + + .+..++..+.+||||||||++|||| ++.+|+++|||| ||+++|+...+.+.+
T Consensus 63 ---------~---~----~--~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~ 124 (178)
T 1ye8_A 63 ---------F---F----T--SKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQ 124 (178)
T ss_dssp ---------T---C----C--CSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHH
T ss_pred ---------c---C----C--ccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHH
Confidence 0 0 0 1145677788999999999999996 999999999999 999999999999999
Q ss_pred HHHHHcCCceEEEEcc---CchHHhh-cCEEEEEeCCeEEE
Q psy5743 583 AIEKLIEGKTVLTIAH---RLSTIRK-SNQICVLDKGKIVE 619 (644)
Q Consensus 583 ~l~~~~~~~TvI~IaH---rl~~i~~-aD~Iivl~~G~ive 619 (644)
.+.+ .+.|+|+++| +...+.. ||+ .+|+|++
T Consensus 125 ~l~~--~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 125 IMHD--PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp HHTC--TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred HHhc--CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 8876 3677999996 5556543 565 5677776
No 74
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.92 E-value=5.6e-28 Score=261.68 Aligned_cols=195 Identities=16% Similarity=0.117 Sum_probs=159.1
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCc---cCCCCC----
Q psy5743 398 GEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGV---DIKELD---- 470 (644)
Q Consensus 398 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~---~i~~~~---- 470 (644)
+.++++|+++.|+. ...+|+++ |+|++||+++|+||||||||||+++|+|+++|++|.|.++|. ++.++.
T Consensus 130 ~~l~~~~v~~~~~t--g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~ 206 (438)
T 2dpy_A 130 NPLQRTPIEHVLDT--GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENIL 206 (438)
T ss_dssp CTTTSCCCCSBCCC--SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTT
T ss_pred CceEEeccceecCC--CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhc
Confidence 45899999999963 35799999 999999999999999999999999999999999999999998 565432
Q ss_pred -hHHHhcceEEEecC-C-CCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHH
Q psy5743 471 -PMYLRSQIGSVSQE-P-TLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQK 547 (644)
Q Consensus 471 -~~~lr~~i~~V~Q~-~-~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQk 547 (644)
...+++.++||+|+ . ....-|+.+|+++.. +.... +......++ +...+|||||
T Consensus 207 ~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~a---------e~~~~-~~~~v~~~l------------d~l~~lS~g~- 263 (438)
T 2dpy_A 207 GPDGRARSVVIAAPADVSPLLRMQGAAYATRIA---------EDFRD-RGQHVLLIM------------DSLTRYAMAQ- 263 (438)
T ss_dssp HHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHH---------HHHHT-TTCEEEEEE------------ECHHHHHHHH-
T ss_pred cccccCceEEEEECCCCCHHHHHHHHHHHHHHH---------HHHHh-CCCCHHHHH------------HhHHHHHHHH-
Confidence 45688899999995 3 344678999997641 11110 001111111 2356799999
Q ss_pred HHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC-----Cc-----eEEEEccCchHHhhcCEEEEEeCCeE
Q psy5743 548 QRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE-----GK-----TVLTIAHRLSTIRKSNQICVLDKGKI 617 (644)
Q Consensus 548 QRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~-----~~-----TvI~IaHrl~~i~~aD~Iivl~~G~i 617 (644)
||++|| +++|++ |++||+.+...+.+.+++..+ ++ |++++||+++ ...||++++|.+|+|
T Consensus 264 qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~v~~l~dG~I 333 (438)
T 2dpy_A 264 REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADSARAILDGHI 333 (438)
T ss_dssp HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHHHHHHSSEEE
T ss_pred HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc-chhhceEEEEeCcEE
Confidence 999999 899998 999999999999999988755 43 9999999999 888999999999999
Q ss_pred EEecChhHHhc
Q psy5743 618 VEIGSYAHLIK 628 (644)
Q Consensus 618 ve~Gt~~eLl~ 628 (644)
+..|+++++..
T Consensus 334 vl~~~~~~~~~ 344 (438)
T 2dpy_A 334 VLSRRLAEAGH 344 (438)
T ss_dssp EECHHHHHTTC
T ss_pred EEeCCHHHccC
Confidence 99999988753
No 75
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.91 E-value=4.1e-24 Score=246.17 Aligned_cols=107 Identities=25% Similarity=0.410 Sum_probs=93.1
Q ss_pred Ccccc-ccCCCCCCChhHHHHHHHHHHHccCC--CEEEeecccCCCCHHHHHHHHHHHHHHcC-CceEEEEccCchHHhh
Q psy5743 530 GFDTI-VGERGIMLSGGQKQRIAIARALIKKS--KILLLDEATSALDAENEYLVQSAIEKLIE-GKTVLTIAHRLSTIRK 605 (644)
Q Consensus 530 Gl~T~-ige~G~~LSGGQkQRiaLARAll~~p--~IliLDEaTSaLD~~~e~~i~~~l~~~~~-~~TvI~IaHrl~~i~~ 605 (644)
|++.. .+..-..|||||||||+|||||.++| ++|||||||++||++..+.+.+.|+++.. +.|+|+|+||++.++.
T Consensus 367 GL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl~~l~~ 446 (842)
T 2vf7_A 367 GLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHDLDVIRR 446 (842)
T ss_dssp TCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHTT
T ss_pred CCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHh
Confidence 55533 56667799999999999999999999 59999999999999999999999888753 7899999999999999
Q ss_pred cCEEEEE------eCCeEEEecChhHHhcCCCcHHHH
Q psy5743 606 SNQICVL------DKGKIVEIGSYAHLIKNPNSMFNK 636 (644)
Q Consensus 606 aD~Iivl------~~G~ive~Gt~~eLl~~~~~~y~~ 636 (644)
||+|++| ++|+++..|+++++.+.+.....+
T Consensus 447 aD~ii~lgpgaG~~~G~iv~~g~~~~~~~~~~~~~~~ 483 (842)
T 2vf7_A 447 ADWLVDVGPEAGEKGGEILYSGPPEGLKHVPESQTGQ 483 (842)
T ss_dssp CSEEEEECSSSGGGCCSEEEEECGGGGGGCTTCHHHH
T ss_pred CCEEEEeCCCcccCCCEEEEecCHHHHHhchHHHHHH
Confidence 9999999 799999999999998753444433
No 76
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.91 E-value=1.2e-26 Score=248.22 Aligned_cols=168 Identities=20% Similarity=0.225 Sum_probs=134.7
Q ss_pred CccccceeEEEeCCC--------------------EEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHH
Q psy5743 415 AVILNDLSLKIQSGS--------------------MTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYL 474 (644)
Q Consensus 415 ~~vL~~isl~i~~G~--------------------~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~l 474 (644)
+.+|++|||++++|+ .+||+||||||||||+|+|+|+++|++|+|.++|.++.
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t------- 108 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT------- 108 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----------
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc-------
Confidence 468999999999999 99999999999999999999999999999999998753
Q ss_pred hcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChh--HHHHHHH
Q psy5743 475 RSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGG--QKQRIAI 552 (644)
Q Consensus 475 r~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGG--QkQRiaL 552 (644)
| .++++|++...+-|+.||+.++.+ ++++.+.++..++.+. +..+ . |||| ||||++|
T Consensus 109 ~--~~~v~q~~~~~~ltv~D~~g~~~~------~~~~~~~L~~~~L~~~--------~~~~----~-lS~G~~~kqrv~l 167 (413)
T 1tq4_A 109 M--ERHPYKHPNIPNVVFWDLPGIGST------NFPPDTYLEKMKFYEY--------DFFI----I-ISATRFKKNDIDI 167 (413)
T ss_dssp C--CCEEEECSSCTTEEEEECCCGGGS------SCCHHHHHHHTTGGGC--------SEEE----E-EESSCCCHHHHHH
T ss_pred e--eEEeccccccCCeeehHhhcccch------HHHHHHHHHHcCCCcc--------CCeE----E-eCCCCccHHHHHH
Confidence 1 278999986567899999988743 2345667777765432 2222 2 8999 9999999
Q ss_pred HHHHcc----------CCCEEEeecccCCCCHHHHHHHHHHHHHHc----------CCceEEEEccCchH--Hh-hcCEE
Q psy5743 553 ARALIK----------KSKILLLDEATSALDAENEYLVQSAIEKLI----------EGKTVLTIAHRLST--IR-KSNQI 609 (644)
Q Consensus 553 ARAll~----------~p~IliLDEaTSaLD~~~e~~i~~~l~~~~----------~~~TvI~IaHrl~~--i~-~aD~I 609 (644)
|||+.+ +|++++||||||+||+.++..+.+.|+++. .+.++++-||.++- +. -+|+|
T Consensus 168 a~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I 247 (413)
T 1tq4_A 168 AKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKL 247 (413)
T ss_dssp HHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHH
T ss_pred HHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHH
Confidence 999999 999999999999999999999988887763 12567778998875 43 36666
Q ss_pred E
Q psy5743 610 C 610 (644)
Q Consensus 610 i 610 (644)
.
T Consensus 248 ~ 248 (413)
T 1tq4_A 248 I 248 (413)
T ss_dssp H
T ss_pred H
Confidence 4
No 77
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.90 E-value=6.8e-27 Score=242.66 Aligned_cols=201 Identities=15% Similarity=0.133 Sum_probs=143.3
Q ss_pred HHHHHHHHHHhcCCCccCCCCCccCCCCCccEEEEEEEEEcCCCCCCccccceeEE-----------------------E
Q psy5743 369 GACHRLWEIMEREPLISTSGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLK-----------------------I 425 (644)
Q Consensus 369 ~s~~Rl~~~l~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~~vL~~isl~-----------------------i 425 (644)
.++.|+.+.+..+..+.+. . ......+.|+++||++.|. |+++++++. +
T Consensus 16 ~~~~~l~~~~~~~~~~~~~-~--~l~~~~~~i~~~~v~~~y~-----p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 87 (312)
T 3aez_A 16 RQWRALRMSTPLALTEEEL-V--GLRGLGEQIDLLEVEEVYL-----PLARLIHLQVAARQRLFAATAEFLGEPQQNPDR 87 (312)
T ss_dssp HHHHGGGTTCCCCCCHHHH-H--TTCCTTCCCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSS
T ss_pred HHHHHHHhcCCCCCCHHHH-H--hccCCCCeEEeeehhhhhh-----hHHHHHHHHHhhhhHHHHHHHHhhcccccccCC
Confidence 3566666555443221111 0 1122345699999999993 567777765 8
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCC----C
Q psy5743 426 QSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGV----N 501 (644)
Q Consensus 426 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~----~ 501 (644)
++|+++||+||||||||||+++|.|+++|++|. +++++|+||++++..|++||+.+.. |
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~-----------------~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~ 150 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLARWDHH-----------------PRVDLVTTDGFLYPNAELQRRNLMHRKGFP 150 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTC-----------------CCEEEEEGGGGBCCHHHHHHTTCTTCTTSG
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccccCCC-----------------CeEEEEecCccCCcccHHHHHHHHHhcCCC
Confidence 999999999999999999999999999998664 4799999999999999999998642 2
Q ss_pred CCCCCCHHHHHHHHHHHhhccchhhhhcCcc-ccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHH
Q psy5743 502 DSSSVTKSDIIHAAKEANAYGFVIDFKNGFD-TIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLV 580 (644)
Q Consensus 502 ~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~-T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i 580 (644)
+ ..+.+.+.+.++..+ .|.. ..+ ..|||||+||+++|||++.+|+|+|||||++.+|...
T Consensus 151 ~--~~d~~~~~~~L~~l~---------~~~~~~~~----~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~---- 211 (312)
T 3aez_A 151 E--SYNRRALMRFVTSVK---------SGSDYACA----PVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT---- 211 (312)
T ss_dssp G--GBCHHHHHHHHHHHH---------TTCSCEEE----EEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS----
T ss_pred h--HHHHHHHHHHHHHhC---------CCcccCCc----ccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch----
Confidence 1 133444554444443 3433 443 4799999999999999999999999999999998632
Q ss_pred HHHHHHHcCCceEEEEccCchHH--hhcCEEEEEeCCe
Q psy5743 581 QSAIEKLIEGKTVLTIAHRLSTI--RKSNQICVLDKGK 616 (644)
Q Consensus 581 ~~~l~~~~~~~TvI~IaHrl~~i--~~aD~Iivl~~G~ 616 (644)
..+.+.+ ..+|+|+|..+.. +..+|.+.+.+|+
T Consensus 212 -~~l~~~~--D~~I~V~a~~~~~~~R~i~R~~~~rd~~ 246 (312)
T 3aez_A 212 -LMVSDLF--DFSLYVDARIEDIEQWYVSRFLAMRTTA 246 (312)
T ss_dssp -CCGGGGC--SEEEEEEECHHHHHHHHHHHHHHHTTTG
T ss_pred -HHHHHhc--CcEEEEECCHHHHHHHHHHHHHHHHhcc
Confidence 1233332 3568888887664 3456666565544
No 78
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.90 E-value=4.5e-27 Score=238.10 Aligned_cols=186 Identities=18% Similarity=0.181 Sum_probs=152.9
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCC-CcEEEECCccCCCCChHHHhcce
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQ-NGKILIDGVDIKELDPMYLRSQI 478 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~-~G~I~idg~~i~~~~~~~lr~~i 478 (644)
++++|++|. ++|+++| +++|+.++|+||||||||||+++|+|+++|+ +|+|.++|.++..+. +..+
T Consensus 6 ~~l~~l~~~-------~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~----~~~~ 72 (261)
T 2eyu_A 6 PEFKKLGLP-------DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF----KHKK 72 (261)
T ss_dssp CCGGGSSCC-------THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC----CCSS
T ss_pred CChHHCCCH-------HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec----CCcc
Confidence 345566542 4899999 9999999999999999999999999999998 999999999987553 3456
Q ss_pred EEEec-----CCCCCcccHHHHHhcCCCCC----CCCCHHHHHHHHHHHhhccch-------------------------
Q psy5743 479 GSVSQ-----EPTLFSGTIYENILYGVNDS----SSVTKSDIIHAAKEANAYGFV------------------------- 524 (644)
Q Consensus 479 ~~V~Q-----~~~Lf~gTIreNI~~g~~~~----~~~~~~~i~~a~~~a~l~~~i------------------------- 524 (644)
++++| ++..|..+|+.++.. +|+. ++.|.+.++++++.+.-...+
T Consensus 73 ~~v~q~~~gl~~~~l~~~la~aL~~-~p~illlDEp~D~~~~~~~l~~~~~g~~vl~t~H~~~~~~~~dri~~l~~~~~~ 151 (261)
T 2eyu_A 73 SIVNQREVGEDTKSFADALRAALRE-DPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQ 151 (261)
T ss_dssp SEEEEEEBTTTBSCHHHHHHHHHHH-CCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSHHHHHHHHHHTSCGGGH
T ss_pred eeeeHHHhCCCHHHHHHHHHHHHhh-CCCEEEeCCCCCHHHHHHHHHHHccCCEEEEEeCcchHHHHHHHHhhhcCcccc
Confidence 78888 777889999999987 3541 112777777776655421111
Q ss_pred ----hhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCE--EEeecccCCCCHHH---------HHHHHHHHHHHcC
Q psy5743 525 ----IDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKI--LLLDEATSALDAEN---------EYLVQSAIEKLIE 589 (644)
Q Consensus 525 ----~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~I--liLDEaTSaLD~~~---------e~~i~~~l~~~~~ 589 (644)
..+++++++.|++++..+||| ||+++||+++.+|+| +|+||+||++|... +..+++++....+
T Consensus 152 ~~~~~~l~~~l~~vi~qrl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 229 (261)
T 2eyu_A 152 EQVRIVLSFILQGIISQRLLPKIGG--GRVLAYGLLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQ 229 (261)
T ss_dssp HHHHHHHHHHEEEEEEEEEECCSSS--SSEEEEEEECCCHHHHHHHHHTCHHHHHHHHHHSCSCTTEECHHHHHHHHHHT
T ss_pred chHHHHHHHHhhEEEEEEeEecCCC--CEEEEEEEecCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHc
Confidence 136789999999999999999 999999999999999 99999999999873 5578888988889
Q ss_pred CceEEEEccCch
Q psy5743 590 GKTVLTIAHRLS 601 (644)
Q Consensus 590 ~~TvI~IaHrl~ 601 (644)
++|.+.++||++
T Consensus 230 g~t~~~~a~r~~ 241 (261)
T 2eyu_A 230 GLITLEDAMEAS 241 (261)
T ss_dssp TSSCHHHHHHHC
T ss_pred CCCCHHHHHHHh
Confidence 999999999987
No 79
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.89 E-value=2e-26 Score=245.21 Aligned_cols=178 Identities=19% Similarity=0.184 Sum_probs=149.5
Q ss_pred ccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCC-CcEEEECCccCCCCChHHHhcceEEEec-----CCCCCc
Q psy5743 416 VILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQ-NGKILIDGVDIKELDPMYLRSQIGSVSQ-----EPTLFS 489 (644)
Q Consensus 416 ~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~-~G~I~idg~~i~~~~~~~lr~~i~~V~Q-----~~~Lf~ 489 (644)
++|++++ +++|+.++|+||||||||||+++|+|+++|+ +|+|.+.|.++. + .+++.+++|+| ++..|+
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-~---~~~~~~~~v~Q~~~g~~~~~~~ 199 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-Y---VFKHKKSIVNQREVGEDTKSFA 199 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-S---CCCCSSSEEEEEEBTTTBSCSH
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-h---hhccCceEEEeeecCCCHHHHH
Confidence 4577765 7899999999999999999999999999998 899988887764 2 36778999999 899999
Q ss_pred ccHHHHHhcCCCCC----CCCCHHHHHHHHHHHhhccch-----------------------------hhhhcCcccccc
Q psy5743 490 GTIYENILYGVNDS----SSVTKSDIIHAAKEANAYGFV-----------------------------IDFKNGFDTIVG 536 (644)
Q Consensus 490 gTIreNI~~g~~~~----~~~~~~~i~~a~~~a~l~~~i-----------------------------~~lp~Gl~T~ig 536 (644)
++|++|++. +|+. +.-|.+.++.+++.++....+ ..+|.++++.|+
T Consensus 200 ~~l~~~L~~-~pd~illdE~~d~e~~~~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~l~~~~~~~~~~~~l~~~l~~vv~ 278 (372)
T 2ewv_A 200 DALRAALRE-DPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGIIS 278 (372)
T ss_dssp HHHHHHTTS-CCSEEEESCCCSHHHHHHHHHHHTTTCEEEECCCCCSHHHHHHHHHHTSCTTSHHHHHHHHHHSCCEEEE
T ss_pred HHHHHHhhh-CcCEEEECCCCCHHHHHHHHHHHhcCCEEEEEECcchHHHHHHHHHHhcCcccchhHHHHHHHhhhEEEE
Confidence 999999997 4651 111778888888877642211 125789999999
Q ss_pred CCCCCCChhHHHHHHHHHHHccCCCE--EEeecccCCCCHH----H-----HHHHHHHHHHHcCCceEEEEccCchH
Q psy5743 537 ERGIMLSGGQKQRIAIARALIKKSKI--LLLDEATSALDAE----N-----EYLVQSAIEKLIEGKTVLTIAHRLST 602 (644)
Q Consensus 537 e~G~~LSGGQkQRiaLARAll~~p~I--liLDEaTSaLD~~----~-----e~~i~~~l~~~~~~~TvI~IaHrl~~ 602 (644)
+++..+||| ||+++||+++.+|+| +|+||+||++|.. + +..+++++....+++|.+.++||++.
T Consensus 279 qrl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~r~~~ 353 (372)
T 2ewv_A 279 QRLLPKIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAMEASP 353 (372)
T ss_dssp EEEEECSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHHCC-------CBCSHHHHHHTTTTSSSCTTTTTSSCS
T ss_pred EEeEecCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHCCCCCHHHHHHHcC
Confidence 999999999 999999999999999 9999999999965 3 45688888888899999999999984
No 80
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.89 E-value=3.7e-26 Score=216.07 Aligned_cols=111 Identities=18% Similarity=0.205 Sum_probs=89.5
Q ss_pred CEEEEECCCCCcHHHHHHHHhccCCCC---CcEEEECCccCCCCC---hHHHh-cceE----EEecCCCCCcccHHHHHh
Q psy5743 429 SMTSVIGSSGSGKSTLAMLLLRLYDPQ---NGKILIDGVDIKELD---PMYLR-SQIG----SVSQEPTLFSGTIYENIL 497 (644)
Q Consensus 429 ~~vaIvG~SGsGKSTLl~lL~g~~~p~---~G~I~idg~~i~~~~---~~~lr-~~i~----~V~Q~~~Lf~gTIreNI~ 497 (644)
++++|||+||||||||+++|+|+|+|+ .|.|.+||.++.+++ .++|| ++++ +++|++++| +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~---i~~--- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF---IRR--- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE---EEE---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE---Eec---
Confidence 689999999999999999999999998 899999999998887 78898 4788 899999988 211
Q ss_pred cCCCCCCCCCHHHHHHHHHHHhhccchhh-hhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEE
Q psy5743 498 YGVNDSSSVTKSDIIHAAKEANAYGFVID-FKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKIL 563 (644)
Q Consensus 498 ~g~~~~~~~~~~~i~~a~~~a~l~~~i~~-lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~Il 563 (644)
+ + ++. .+++++++.+ +| ||||.|+|+ |||||||||+||||++++|++.
T Consensus 77 -~-------~-~~~-----~a~l~~~i~~~l~-g~dt~i~Eg---lSgGq~qri~lARall~~p~i~ 125 (171)
T 2f1r_A 77 -V-------S-EEE-----GNDLDWIYERYLS-DYDLVITEG---FSKAGKDRIVVVKKPEEVEHFR 125 (171)
T ss_dssp -C-------C-HHH-----HTCHHHHHHHHTT-TCSEEEEES---CGGGCCCEEEECSSGGGGGGGC
T ss_pred -C-------C-hhh-----hhCHHHHHHhhCC-CCCEEEECC---cCCCCCcEEEEEecccCCCccC
Confidence 1 1 221 7799999999 99 999999995 9999999999999999999874
No 81
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.89 E-value=3.2e-25 Score=225.62 Aligned_cols=150 Identities=17% Similarity=0.141 Sum_probs=98.5
Q ss_pred EEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcc-cHHHHHhcCCCCCCCCCH
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTK 508 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~g-TIreNI~~g~~~~~~~~~ 508 (644)
++||+||||||||||+|+|+|++.|++|+|.++|.++.. ...++.+++++|++.++.. |+.||+.||.........
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~---~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~ 80 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPK---TVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCW 80 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCC---CCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCc---ceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHH
Confidence 489999999999999999999999999999999988743 3456789999999998865 999999999643111223
Q ss_pred HHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc
Q psy5743 509 SDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI 588 (644)
Q Consensus 509 ~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~ 588 (644)
+.+.+.+. .++...++ ..||||||||+++|||+.. +++|||||++||+.. ..+++.+.
T Consensus 81 ~~i~~~~~----~~~~~~~~-----------~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD-~~~l~~L~--- 138 (270)
T 3sop_A 81 EPIEKYIN----EQYEKFLK-----------EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD-LEFMKHLS--- 138 (270)
T ss_dssp HHHHHHHH----HHHHHHHH-----------HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH-HHHHHHHH---
T ss_pred HHHHHHHH----HHHHhhhH-----------HhcCcccchhhhhheeeee---eEEEecCCCcCCHHH-HHHHHHHH---
Confidence 34443333 22322332 2599999999999999875 999999999999987 33444443
Q ss_pred CCceEEEEccCchHHh
Q psy5743 589 EGKTVLTIAHRLSTIR 604 (644)
Q Consensus 589 ~~~TvI~IaHrl~~i~ 604 (644)
+..++|+|.|+.+++.
T Consensus 139 ~~~~vI~Vi~K~D~lt 154 (270)
T 3sop_A 139 KVVNIIPVIAKADTMT 154 (270)
T ss_dssp TTSEEEEEETTGGGSC
T ss_pred hcCcEEEEEeccccCC
Confidence 3489999999987663
No 82
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.88 E-value=6.3e-24 Score=219.32 Aligned_cols=175 Identities=15% Similarity=0.193 Sum_probs=128.4
Q ss_pred cceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCC----hHHH--hcceEEEecCCC-CCc-c
Q psy5743 419 NDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELD----PMYL--RSQIGSVSQEPT-LFS-G 490 (644)
Q Consensus 419 ~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~----~~~l--r~~i~~V~Q~~~-Lf~-g 490 (644)
+++||++++|++++|||||||||||+++.|+|+++|++|+|.++|.|+.... ...| |..+++|+|++. ++. .
T Consensus 91 ~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~ 170 (302)
T 3b9q_A 91 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 170 (302)
T ss_dssp CSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHH
T ss_pred cccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHH
Confidence 4678899999999999999999999999999999999999999999987653 2344 457999999987 654 5
Q ss_pred cHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCC--EEEeecc
Q psy5743 491 TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSK--ILLLDEA 568 (644)
Q Consensus 491 TIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~--IliLDEa 568 (644)
|++||+.++... ..+ . ..++.+++.+. .+..++ .|| |||++||||+..+|+ +|+|| |
T Consensus 171 ~v~e~l~~~~~~--~~d-~---~lldt~gl~~~-------~~~~~~----eLS---kqr~~iaral~~~P~e~lLvLD-p 229 (302)
T 3b9q_A 171 VLSKAVKRGKEE--GYD-V---VLCDTSGRLHT-------NYSLME----ELI---ACKKAVGKIVSGAPNEILLVLD-G 229 (302)
T ss_dssp HHHHHHHHHHHT--TCS-E---EEECCCCCSSC-------CHHHHH----HHH---HHHHHHHTTSTTCCSEEEEEEE-G
T ss_pred HHHHHHHHHHHc--CCc-c---hHHhcCCCCcc-------hhHHHH----HHH---HHHHHHHHhhccCCCeeEEEEe-C
Confidence 899999875211 011 0 01112222111 122222 377 999999999999999 99999 9
Q ss_pred cCCCCHHHHHHHHHHHHHHcCCceEEEEcc---------CchHH-hhcCEEEEEeCCeEE
Q psy5743 569 TSALDAENEYLVQSAIEKLIEGKTVLTIAH---------RLSTI-RKSNQICVLDKGKIV 618 (644)
Q Consensus 569 TSaLD~~~e~~i~~~l~~~~~~~TvI~IaH---------rl~~i-~~aD~Iivl~~G~iv 618 (644)
|+++|+.+.. +.+.+ ..+.|+|++|| .++.+ ...+.|.++..|+.+
T Consensus 230 tsglD~~~~~---~~~~~-~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~~ 285 (302)
T 3b9q_A 230 NTGLNMLPQA---REFNE-VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAV 285 (302)
T ss_dssp GGGGGGHHHH---HHHHH-HTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSSG
T ss_pred CCCcCHHHHH---HHHHH-hcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCCh
Confidence 9999998653 22322 13789999999 44555 346899999999753
No 83
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.88 E-value=1e-22 Score=214.53 Aligned_cols=82 Identities=17% Similarity=0.227 Sum_probs=76.4
Q ss_pred CCChhHHHHHHHHHHHc---------cCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEE
Q psy5743 541 MLSGGQKQRIAIARALI---------KKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICV 611 (644)
Q Consensus 541 ~LSGGQkQRiaLARAll---------~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iiv 611 (644)
.|||||+||++|||+|. .+|+|||||||||+||+.....+.+.|.++. .|+|++|| ++. .||+|++
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~--qt~i~~th-~~~--~~~~i~~ 339 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP--QAIVTGTE-LAP--GAALTLR 339 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS--EEEEEESS-CCT--TCSEEEE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC--cEEEEEEe-ccc--cCCEEEE
Confidence 59999999999999999 8999999999999999999999999998863 89999999 454 8999999
Q ss_pred EeCCeEEEecChhHHh
Q psy5743 612 LDKGKIVEIGSYAHLI 627 (644)
Q Consensus 612 l~~G~ive~Gt~~eLl 627 (644)
|++|+|++.|+++++.
T Consensus 340 l~~G~i~~~g~~~~~~ 355 (359)
T 2o5v_A 340 AQAGRFTPVADEEMQA 355 (359)
T ss_dssp EETTEEEECCCTTTSC
T ss_pred EECCEEEecCCHHHHh
Confidence 9999999999999873
No 84
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.87 E-value=1.3e-25 Score=218.35 Aligned_cols=168 Identities=17% Similarity=0.191 Sum_probs=134.8
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhccCC-------------CCCcEEEECCccCCCCChHHHhcceEEEecCCCCCccc
Q psy5743 425 IQSGSMTSVIGSSGSGKSTLAMLLLRLYD-------------PQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGT 491 (644)
Q Consensus 425 i~~G~~vaIvG~SGsGKSTLl~lL~g~~~-------------p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gT 491 (644)
+++|+.++|+||||||||||+++|+|+++ |..|+ ++|.++..++.+.+++.+ +|++++|++|
T Consensus 1 m~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~~~~ 75 (198)
T 1lvg_A 1 MAGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIEHAE 75 (198)
T ss_dssp ----CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEeeee
Confidence 36899999999999999999999999986 88998 699999999999999876 7999999999
Q ss_pred HHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHH-HHccCCCEEEeecccC
Q psy5743 492 IYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIAR-ALIKKSKILLLDEATS 570 (644)
Q Consensus 492 IreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLAR-All~~p~IliLDEaTS 570 (644)
+++|+ +| .++++++++++.....-+ .-.|+|+++.... ++ .|| +++++|++++|||+||
T Consensus 76 ~~~n~-~g------~~~~~i~~~~~~~~~~~~-~~~~~g~~~~~~~-----------~~-~~~~~~l~~p~~~ilde~~~ 135 (198)
T 1lvg_A 76 FSGNL-YG------TSKEAVRAVQAMNRICVL-DVDLQGVRSIKKT-----------DL-CPIYIFVQPPSLDVLEQRLR 135 (198)
T ss_dssp ETTEE-EE------EEHHHHHHHHHTTCEEEE-ECCHHHHHHHTTS-----------SC-CCEEEEEECSCHHHHHHHHH
T ss_pred ecCcc-CC------CCHHHHHHHHHcCCcEEE-ECCHHHHHHHHhc-----------CC-CcEEEEEeCCCHHHHHHHHH
Confidence 99998 77 357889988876433222 2347788887532 22 677 8999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEecChhHHh
Q psy5743 571 ALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLI 627 (644)
Q Consensus 571 aLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eLl 627 (644)
++|.++|+.|.+.|.+..++ +.++| ++ ..+|+|+++++ ...++++|.
T Consensus 136 ~~d~~~e~~i~~~l~~~~~~---~~~a~--~~-~~~D~iivnd~----le~a~~~l~ 182 (198)
T 1lvg_A 136 LRNTETEESLAKRLAAARTD---MESSK--EP-GLFDLVIINDD----LDKAYATLK 182 (198)
T ss_dssp HHTCSCHHHHHHHHHHHHHH---TTGGG--ST-TTCSEEEECSS----HHHHHHHHH
T ss_pred hcCCCCHHHHHHHHHHHHHH---HHHhh--cc-CCceEEEECCC----HHHHHHHHH
Confidence 99999999999999877554 46788 55 89999999985 234566664
No 85
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.86 E-value=5.6e-23 Score=216.12 Aligned_cols=174 Identities=15% Similarity=0.187 Sum_probs=129.0
Q ss_pred cceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCC----hHHH--hcceEEEecCCC-CC-cc
Q psy5743 419 NDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELD----PMYL--RSQIGSVSQEPT-LF-SG 490 (644)
Q Consensus 419 ~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~----~~~l--r~~i~~V~Q~~~-Lf-~g 490 (644)
..+||++++|++++|||||||||||+++.|+|+++|++|+|.++|.|+.... ...| |..+++|+|++. ++ ..
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 3578889999999999999999999999999999999999999999986643 2334 467999999987 55 46
Q ss_pred cHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCC--EEEeecc
Q psy5743 491 TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSK--ILLLDEA 568 (644)
Q Consensus 491 TIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~--IliLDEa 568 (644)
|++||+.++... ..+. ..++.+++.+. .+..++ .|| |||++||||+..+|+ +|+|| |
T Consensus 228 tv~e~l~~~~~~--~~d~----~lldt~Gl~~~-------~~~~~~----eLS---kqr~~iaral~~~P~e~lLvLD-p 286 (359)
T 2og2_A 228 VLSKAVKRGKEE--GYDV----VLCDTSGRLHT-------NYSLME----ELI---ACKKAVGKIVSGAPNEILLVLD-G 286 (359)
T ss_dssp HHHHHHHHHHHT--TCSE----EEEECCCCSSC-------CHHHHH----HHH---HHHHHHHHHSTTCCSEEEEEEE-G
T ss_pred hHHHHHHHHHhC--CCHH----HHHHhcCCChh-------hhhHHH----HHH---HHHHHHHHHHhcCCCceEEEEc-C
Confidence 899999875311 0110 01112222111 112222 377 999999999999999 99999 9
Q ss_pred cCCCCHHHHHHHHHHHHHHcCCceEEEEcc---------CchHH-hhcCEEEEEeCCeE
Q psy5743 569 TSALDAENEYLVQSAIEKLIEGKTVLTIAH---------RLSTI-RKSNQICVLDKGKI 617 (644)
Q Consensus 569 TSaLD~~~e~~i~~~l~~~~~~~TvI~IaH---------rl~~i-~~aD~Iivl~~G~i 617 (644)
|+++|+.+.. +.+.+ ..+.|+|++|| .++.+ ...+.|..+..|+.
T Consensus 287 ttglD~~~~~---~~~~~-~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 287 NTGLNMLPQA---REFNE-VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp GGGGGGHHHH---HHHHH-HTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred CCCCCHHHHH---HHHHH-hcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 9999998663 22322 13799999999 34555 34679999999974
No 86
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.86 E-value=3.3e-23 Score=217.77 Aligned_cols=193 Identities=15% Similarity=0.127 Sum_probs=149.4
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCC-------CCh
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKE-------LDP 471 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~-------~~~ 471 (644)
-++.+++++.|+. ...+++++ |+|.+||+++|+||||||||||+++|+|+.+|+.|.|.++|.+.++ +..
T Consensus 45 ~i~~~~l~~~~~t--g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~ 121 (347)
T 2obl_A 45 PLLRQVIDQPFIL--GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQ 121 (347)
T ss_dssp STTCCCCCSEECC--SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCH
T ss_pred CeeecccceecCC--CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhh
Confidence 4889999999963 35799999 9999999999999999999999999999999999999999975221 233
Q ss_pred HHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCcccc-ccCCCCCCChhHHHHH
Q psy5743 472 MYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTI-VGERGIMLSGGQKQRI 550 (644)
Q Consensus 472 ~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~-ige~G~~LSGGQkQRi 550 (644)
..+++.+.+++|.+. ...+++..+.....+.++..+ .|.+.. +-+.-.+||+|| ||+
T Consensus 122 ~~~~~~v~~~~~~~~-------------------~~~~r~~~~~~~~~~ae~~~~--~~~~vl~~ld~~~~lS~g~-r~v 179 (347)
T 2obl_A 122 STLSKCVLVVTTSDR-------------------PALERMKAAFTATTIAEYFRD--QGKNVLLMMDSVTRYARAA-RDV 179 (347)
T ss_dssp HHHTTEEEEEECTTS-------------------CHHHHHHHHHHHHHHHHHHHT--TTCEEEEEEETHHHHHHHH-HHH
T ss_pred hhhhceEEEEECCCC-------------------CHHHHHHHHHHHHHHHHHHHh--ccccHHHHHhhHHHHHHHH-HHH
Confidence 345566777776431 113444444444444443322 233321 124456899999 999
Q ss_pred HHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC---Cc-----eEEEEccCchHHhhcCEEEEEeCCeEEEecC
Q psy5743 551 AIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE---GK-----TVLTIAHRLSTIRKSNQICVLDKGKIVEIGS 622 (644)
Q Consensus 551 aLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~---~~-----TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt 622 (644)
++| +.+|++ |+++|+.....+.+.+++..+ +. |++++||+++ -.-||++++|.+|+|+..|+
T Consensus 180 ~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~-~~i~d~v~~i~dG~Ivl~~~ 249 (347)
T 2obl_A 180 GLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN-DPIGDEVRSILDGHIVLTRE 249 (347)
T ss_dssp HHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC-CHHHHHHHHHCSEEEEBCHH
T ss_pred HHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC-ChhhhheEEeeCcEEEEeCC
Confidence 999 688888 999999999999999988752 66 8999999999 67799999999999999998
Q ss_pred hhHH
Q psy5743 623 YAHL 626 (644)
Q Consensus 623 ~~eL 626 (644)
.+++
T Consensus 250 l~~~ 253 (347)
T 2obl_A 250 LAEE 253 (347)
T ss_dssp HHTT
T ss_pred HHHc
Confidence 8776
No 87
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.85 E-value=5.8e-24 Score=204.53 Aligned_cols=159 Identities=16% Similarity=0.145 Sum_probs=123.1
Q ss_pred CCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCC
Q psy5743 428 GSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVT 507 (644)
Q Consensus 428 G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~ 507 (644)
|++++|+||||||||||+++|+|+++ ++| |.+||.++.+++ .+++++++++|+. +|+ ++|+...... .
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~--~~~~~ig~~~~~~---~g~-~~~l~~~~~~---~- 68 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVR--QGGRRIGFDVVTL---SGT-RGPLSRVGLE---P- 68 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEE--TTSSEEEEEEEET---TSC-EEEEEECCCC---C-
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhH--hhhceEEEEEEec---ccc-eehhhccccc---C-
Confidence 78999999999999999999999999 999 999999887654 5789999999986 443 2333211000 0
Q ss_pred HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHH-HHHH---HHccCCCEEEeec--ccCCCCHHHHHHHH
Q psy5743 508 KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRI-AIAR---ALIKKSKILLLDE--ATSALDAENEYLVQ 581 (644)
Q Consensus 508 ~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRi-aLAR---All~~p~IliLDE--aTSaLD~~~e~~i~ 581 (644)
. +...+..+|+.|..+|||||+++ +++| |+.++|+++|||| ||..+|....+.+.
T Consensus 69 -------------~------~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~ 129 (189)
T 2i3b_A 69 -------------P------PGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVR 129 (189)
T ss_dssp -------------C------SSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHH
T ss_pred -------------C------ccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHH
Confidence 0 11234488999999999999999 5666 7899999999999 89889988777776
Q ss_pred HHHHHHcCCceEEE--Ec--cCchHHhhcCEEEEEeCCeEEEec
Q psy5743 582 SAIEKLIEGKTVLT--IA--HRLSTIRKSNQICVLDKGKIVEIG 621 (644)
Q Consensus 582 ~~l~~~~~~~TvI~--Ia--Hrl~~i~~aD~Iivl~~G~ive~G 621 (644)
+.+.+ .+|+|+ |+ ||.+ ....|+|..+++|+|++-.
T Consensus 130 ~~l~~---~~~~ilgti~vsh~~~-~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 130 QTLST---PGTIILGTIPVPKGKP-LALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp HHHHC---SSCCEEEECCCCCSSC-CTTHHHHHTTCCSEEEECC
T ss_pred HHHhC---CCcEEEEEeecCCCCc-hHHHHHHeecCCcEEEEeC
Confidence 66653 345554 44 9886 6678999999999998754
No 88
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.85 E-value=9e-26 Score=239.53 Aligned_cols=224 Identities=16% Similarity=0.040 Sum_probs=159.9
Q ss_pred HHHHHHHHHHc-CCcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCCCCCcc-CCCCCcc
Q psy5743 322 VLYYGGVMVSY-ETITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMEREPLISTSGGKFF-SHSLKGE 399 (644)
Q Consensus 322 vl~~g~~~v~~-g~~t~g~l~a~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~Rl~~~l~~~~~~~~~~~~~~-~~~~~~~ 399 (644)
+.+.|++.+.. |.+|.|.+.++..+...+..| .+......++.+..+.+|+.+++ +|..+....... .....+.
T Consensus 51 v~~~G~~~~~~~~~lt~~~l~~~~~~~~~~~~~--~l~~~~~~~~~~l~~~~Ri~~vl--~p~~~~~~~~~~ir~~~~~~ 126 (361)
T 2gza_A 51 CERASAWEYYAVPNLDYEHLISLGTATARFVDQ--DISDSRPVLSAILPMGERIQIVR--PPACEHGTISVTIRKPSFTR 126 (361)
T ss_dssp EEETTEEEEEECTTCCHHHHHHHHHHHHHHTTC--CCSSSSCEEEEECTTSCEEEEEC--TTTBCTTCCEEEEECCCCCC
T ss_pred EEECCeEEEeCCCCCCHHHHHHHHHHHHHHcCC--ccCCCCCeEEEEcCCCcEEEEEe--cCccCCCCeEEEEEecCCCC
Confidence 34556666665 889999999999888777655 33333333344444567888877 332211110000 0111234
Q ss_pred E---------EEEEEEEE---cCCCCCCccc---------cceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcE
Q psy5743 400 I---------DFNNIRFS---YPSRPDAVIL---------NDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGK 458 (644)
Q Consensus 400 I---------~~~~vsf~---Y~~~~~~~vL---------~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~ 458 (644)
+ +|+||+|+ |++. ++++| +++||++++|+.++|+||||||||||+++|+|+++|++|.
T Consensus 127 itl~~l~~~g~f~~v~f~~~~Y~~~-~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~ 205 (361)
T 2gza_A 127 RTLEDYAQQGFFKHVRPMSKSLTPF-EQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRL 205 (361)
T ss_dssp CCHHHHHHTTTTSCCCCSCSCCCHH-HHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCE
T ss_pred CCHHHHHhcCCcCccccccccccch-hHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceE
Confidence 5 89999999 9642 34566 9999999999999999999999999999999999999999
Q ss_pred EEECCccCCCCChHHHhcceEEEe-cCCCC---CcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCcccc
Q psy5743 459 ILIDGVDIKELDPMYLRSQIGSVS-QEPTL---FSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTI 534 (644)
Q Consensus 459 I~idg~~i~~~~~~~lr~~i~~V~-Q~~~L---f~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ 534 (644)
|.++|. .++....+|+.+++++ |++.+ +..|+++||..+... ..+..+...++.+.+++++..+|.|++|.
T Consensus 206 I~ie~~--~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~---~pd~~l~~e~r~~~~~~~l~~l~~g~~~~ 280 (361)
T 2gza_A 206 ITIEDV--PELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRM---KPTRILLAELRGGEAYDFINVAASGHGGS 280 (361)
T ss_dssp EEEESS--SCCCCTTCSSEEEEECC----------CCHHHHHHHHTTS---CCSEEEESCCCSTHHHHHHHHHHTTCCSC
T ss_pred EEECCc--cccCccccCCEEEEeecCccccccccccCHHHHHHHHHhc---CCCEEEEcCchHHHHHHHHHHHhcCCCeE
Confidence 999985 4666666788999999 99886 889999999988543 22333333444466677899999999999
Q ss_pred ccCCCCCCChhHHHHHHHHHH
Q psy5743 535 VGERGIMLSGGQKQRIAIARA 555 (644)
Q Consensus 535 ige~G~~LSGGQkQRiaLARA 555 (644)
+++.+.+-+.+..+|+.....
T Consensus 281 l~t~H~~~~~~~~~Rl~~l~~ 301 (361)
T 2gza_A 281 ITSCHAGSCELTFERLALMVL 301 (361)
T ss_dssp EEEEECSSHHHHHHHHHHHHT
T ss_pred EEEECCCCHHHHHHHHHHHHh
Confidence 999988889999999987764
No 89
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.84 E-value=2.8e-23 Score=203.33 Aligned_cols=178 Identities=14% Similarity=0.075 Sum_probs=109.0
Q ss_pred CCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCCh-HHHhcceEEEecCCCCCcc-c
Q psy5743 414 DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDP-MYLRSQIGSVSQEPTLFSG-T 491 (644)
Q Consensus 414 ~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~-~~lr~~i~~V~Q~~~Lf~g-T 491 (644)
..++++| .+|++||+++|+||||||||||+++|+|++++ |.+++ ++...++ ...++.++|++|++.+|.. |
T Consensus 8 ~~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~----i~~~~-~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 80 (207)
T 1znw_A 8 TKPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN----LHFSV-SATTRAPRPGEVDGVDYHFIDPTRFQQLI 80 (207)
T ss_dssp -------------CCCEEEEECSTTSSHHHHHHHHHHHSTT----CEECC-CEESSCCCTTCCBTTTBEECCHHHHHHHH
T ss_pred CCcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc----eEEcc-cccccCCcccccCCCeeEecCHHHHHHHH
Confidence 3578888 79999999999999999999999999999963 44443 2211111 2236789999999988763 5
Q ss_pred HHHHHhcCCC-----CCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHH---HHccCCCEE
Q psy5743 492 IYENILYGVN-----DSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIAR---ALIKKSKIL 563 (644)
Q Consensus 492 IreNI~~g~~-----~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLAR---All~~p~Il 563 (644)
+.+|+..... .....+.+++.+.++... +.+. ...++|.+.++-..++ ||+.+|+++
T Consensus 81 ~~~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~--~~~~-------------~l~~~gl~~~~~~~~~~lS~l~~~p~~~ 145 (207)
T 1znw_A 81 DQGELLEWAEIHGGLHRSGTLAQPVRAAAATGV--PVLI-------------EVDLAGARAIKKTMPEAVTVFLAPPSWQ 145 (207)
T ss_dssp HTTCEEEEEEEGGGTEEEEEEHHHHHHHHHHTC--CEEE-------------ECCHHHHHHHHHHCTTSEEEEEECSCHH
T ss_pred hcCCceeehhhcCchhhcCCcHHHHHHHHHcCC--eEEE-------------EeCHHHHHHHHHhcCCcEEEEEECCCHH
Confidence 5566532100 000023344443333220 0000 0112233333333333 899999999
Q ss_pred EeecccCCC----CHHHHHHHHHHHHHHc--CCceEEEEccCchHHh-hcCEEEEEe
Q psy5743 564 LLDEATSAL----DAENEYLVQSAIEKLI--EGKTVLTIAHRLSTIR-KSNQICVLD 613 (644)
Q Consensus 564 iLDEaTSaL----D~~~e~~i~~~l~~~~--~~~TvI~IaHrl~~i~-~aD~Iivl~ 613 (644)
+|||||+++ |+...+.+.+.+.++. .+.|+|+|||+++.+. .||+|++|.
T Consensus 146 ~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 146 DLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp HHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 999999998 6678888988888874 3789999999999875 599999985
No 90
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.83 E-value=2.6e-21 Score=224.62 Aligned_cols=166 Identities=25% Similarity=0.417 Sum_probs=120.7
Q ss_pred HHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCC----CCCCHHHHHHHHHHHh
Q psy5743 444 LAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDS----SSVTKSDIIHAAKEAN 519 (644)
Q Consensus 444 Ll~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~----~~~~~~~i~~a~~~a~ 519 (644)
+..+.-+.+.|..|+|.++|++|.++... |+.+|+.+...-. ...--.++.+..+.
T Consensus 384 C~~C~g~rl~~~~~~V~i~G~~i~~~~~~------------------~v~~~l~~~~~~~l~~~~~~~~~~~~~~~~~-- 443 (916)
T 3pih_A 384 CSVCGGRRLNREALSVKINGLNIHEFTEL------------------SISEELEFLKNLNLTEREREIVGELLKEIEK-- 443 (916)
T ss_dssp CTTTCSCCBCTTGGGEEETTEEHHHHHHS------------------BHHHHHHHHHSCCCCTTTTTTHHHHHHHHHH--
T ss_pred chhcccccCChHhcCcEECCccHHHhhhC------------------CHHHHHHHHHhccCcHHHHHHHHhhHHHHHH--
Confidence 34455667889999999999988654333 4455544322100 00001111111111
Q ss_pred hccchhhhhcCcccc-ccCCCCCCChhHHHHHHHHHHHccCCC--EEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEE
Q psy5743 520 AYGFVIDFKNGFDTI-VGERGIMLSGGQKQRIAIARALIKKSK--ILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLT 595 (644)
Q Consensus 520 l~~~i~~lp~Gl~T~-ige~G~~LSGGQkQRiaLARAll~~p~--IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~ 595 (644)
..+++..+ |++.. .......||||||||++|||||.++|+ +|||||||++||+.....+.+.|+++. .++|+|+
T Consensus 444 ~~~~L~~v--gL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~Tviv 521 (916)
T 3pih_A 444 RLEFLVDV--GLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIV 521 (916)
T ss_dssp HHHHHHTT--TCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEE
T ss_pred HHHHHHHc--CCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEE
Confidence 11223332 44432 355567899999999999999999887 999999999999999999999999875 3789999
Q ss_pred EccCchHHhhcCEEEEE------eCCeEEEecChhHHhcCCC
Q psy5743 596 IAHRLSTIRKSNQICVL------DKGKIVEIGSYAHLIKNPN 631 (644)
Q Consensus 596 IaHrl~~i~~aD~Iivl------~~G~ive~Gt~~eLl~~~~ 631 (644)
|+|+++.+..||+|++| ++|+|++.|+++|+++.+.
T Consensus 522 VtHd~~~~~~aD~ii~lgpgag~~~G~iv~~G~~~e~~~~~~ 563 (916)
T 3pih_A 522 VEHDEEVIRNADHIIDIGPGGGTNGGRVVFQGTVDELLKNPD 563 (916)
T ss_dssp ECCCHHHHHTCSEEEEEESSSGGGCSEEEEEECHHHHHHSCT
T ss_pred EeCCHHHHHhCCEEEEEcCCcccCCCEEEEeechhhhhcCch
Confidence 99999999999999999 8999999999999987643
No 91
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.83 E-value=3.9e-23 Score=202.73 Aligned_cols=145 Identities=14% Similarity=0.137 Sum_probs=116.7
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcc---cHHHHHhc--C
Q psy5743 425 IQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSG---TIYENILY--G 499 (644)
Q Consensus 425 i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~g---TIreNI~~--g 499 (644)
.++|+++||+||||||||||+++|.|++.| ++++|+||+++++. |+++|+.+ +
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~ 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNYD 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCCC
Confidence 579999999999999999999999999875 68999999999854 56666554 3
Q ss_pred CCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCC-------C
Q psy5743 500 VNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSA-------L 572 (644)
Q Consensus 500 ~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSa-------L 572 (644)
.+. ..+.+++.++++..++.+++.. | ++++..|+++. |+||+++||+++.+|+++++||||++ |
T Consensus 61 ~~~--~~~~~~~~~~l~~~~~~~~~~~-~-~~~~s~g~~~~-----~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~l 131 (211)
T 3asz_A 61 HPD--AFDLALYLEHAQALLRGLPVEM-P-VYDFRAYTRSP-----RRTPVRPAPVVILEGILVLYPKELRDLMDLKVFV 131 (211)
T ss_dssp SGG--GBCHHHHHHHHHHHHTTCCEEE-C-CEETTTTEECS-----SCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEE
T ss_pred Chh--hhhHHHHHHHHHHHHcCCCcCC-C-cccCcccCCCC-----CeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEE
Confidence 332 3567888999998888776654 4 55555554432 57899999999999999999999999 9
Q ss_pred CHHHHHHHHHHHHHHc--CCceEEEEccCc
Q psy5743 573 DAENEYLVQSAIEKLI--EGKTVLTIAHRL 600 (644)
Q Consensus 573 D~~~e~~i~~~l~~~~--~~~TvI~IaHrl 600 (644)
|+.++..+.+.+.+.. +++|++.++|+.
T Consensus 132 d~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 132 DADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp ECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred eCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999999887653 588999999984
No 92
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.83 E-value=7.4e-23 Score=217.99 Aligned_cols=148 Identities=18% Similarity=0.235 Sum_probs=110.0
Q ss_pred cccceeEEEeC--CCEEEEECCCCCcHHHHHHHHhccCCCCC----cEEEE----CCccCCCCChHHHhcceEEEecCCC
Q psy5743 417 ILNDLSLKIQS--GSMTSVIGSSGSGKSTLAMLLLRLYDPQN----GKILI----DGVDIKELDPMYLRSQIGSVSQEPT 486 (644)
Q Consensus 417 vL~~isl~i~~--G~~vaIvG~SGsGKSTLl~lL~g~~~p~~----G~I~i----dg~~i~~~~~~~lr~~i~~V~Q~~~ 486 (644)
+.+.|+++|++ |++++|+||||||||||+++|+|+++|++ |+|++ +|.++ .++..++ ++|++++|++.
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~~~~~~~-~~I~~~~q~~~ 234 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-AMQYSDY-PQMALGHQRYI 234 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-SSCTTTH-HHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-cCChhHH-HHHHHHHHHHH
Confidence 35689999999 99999999999999999999999999999 99987 46666 5666666 56999999999
Q ss_pred CCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcC--ccc--------cccCCCCCCChhHHHHHHHHHHH
Q psy5743 487 LFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNG--FDT--------IVGERGIMLSGGQKQRIAIARAL 556 (644)
Q Consensus 487 Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~G--l~T--------~ige~G~~LSGGQkQRiaLARAl 556 (644)
+|++|++|||.+++++ ..+.+.+..........++..++.+ ++. +..++|.++||||+||++++|+|
T Consensus 235 ~~~~t~~~nl~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l 311 (365)
T 1lw7_A 235 DYAVRHSHKIAFIDTD---FITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLL 311 (365)
T ss_dssp HHHHHHCSSEEEESSC---HHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHH
T ss_pred HHHHhccCCEEEEeCC---chHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHH
Confidence 9999999999998653 4455555555444455566666644 443 22367788888999999999988
Q ss_pred ---cc--CCCEEEeeccc
Q psy5743 557 ---IK--KSKILLLDEAT 569 (644)
Q Consensus 557 ---l~--~p~IliLDEaT 569 (644)
++ +++|+++||||
T Consensus 312 ~~l~~~~~~~ililde~~ 329 (365)
T 1lw7_A 312 KKLLDKYKVPYIEIESPS 329 (365)
T ss_dssp HHHHHGGGCCCEEEECSS
T ss_pred HHHHHHcCCCEEEeCCCC
Confidence 76 78899999886
No 93
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.83 E-value=6.6e-21 Score=196.99 Aligned_cols=181 Identities=14% Similarity=0.131 Sum_probs=124.5
Q ss_pred ccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCc-EEEECCccCCCCChHHHhcceEEEecCCCCCcccHHH
Q psy5743 416 VILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNG-KILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYE 494 (644)
Q Consensus 416 ~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G-~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIre 494 (644)
++|+++++.+++|+.++|+||+|||||||++.|+|.+.|++| .|.+.+.+ .+...+++++..+.|+..+ +..+
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e---~~~~~~~~r~~~~~~~~~~---~~~~ 96 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE---ESVEETAEDLIGLHNRVRL---RQSD 96 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS---SCHHHHHHHHHHHHTTCCG---GGCH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc---CCHHHHHHHHHHHHcCCCh---hhcc
Confidence 479999999999999999999999999999999999999988 77655433 3566777776666655432 2334
Q ss_pred HHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhH-HHHHHHHHHHccCCCEEEeecccC---
Q psy5743 495 NILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQ-KQRIAIARALIKKSKILLLDEATS--- 570 (644)
Q Consensus 495 NI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQ-kQRiaLARAll~~p~IliLDEaTS--- 570 (644)
|+..+. .++++..++++.. +...+-+ +.+....+|.+| +||+. |+|+..+|+++|+||||+
T Consensus 97 ~l~~~~-----~~~~~~~~~~~~~-----l~~~~l~----i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~ 161 (296)
T 1cr0_A 97 SLKREI-----IENGKFDQWFDEL-----FGNDTFH----LYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVS 161 (296)
T ss_dssp HHHHHH-----HHHTHHHHHHHHH-----HSSSCEE----EECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC----
T ss_pred ccccCC-----CCHHHHHHHHHHH-----hccCCEE----EECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCC
Confidence 554431 2233333332221 1111111 233334689999 77777 999999999999999999
Q ss_pred C---CCH-HHHHHHHHHHHHHcC--CceEEEEccCc--h--------------------HH-hhcCEEEEEeCCeE
Q psy5743 571 A---LDA-ENEYLVQSAIEKLIE--GKTVLTIAHRL--S--------------------TI-RKSNQICVLDKGKI 617 (644)
Q Consensus 571 a---LD~-~~e~~i~~~l~~~~~--~~TvI~IaHrl--~--------------------~i-~~aD~Iivl~~G~i 617 (644)
+ +|. .....+.+.|+++.+ ++|+|+++|.. + .+ ..||+|++|++|+.
T Consensus 162 ~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 162 ASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp -------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 4 344 455677777877643 78999999995 3 34 57999999999875
No 94
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.82 E-value=2.4e-20 Score=207.45 Aligned_cols=76 Identities=17% Similarity=0.328 Sum_probs=71.5
Q ss_pred CCC-ChhHHHHHHHHHHHccCC--CEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCC
Q psy5743 540 IML-SGGQKQRIAIARALIKKS--KILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKG 615 (644)
Q Consensus 540 ~~L-SGGQkQRiaLARAll~~p--~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G 615 (644)
..| |||||||++||||++.+| ++|||||||++||..+...|.+.|.++.+++|+|+|||+++.+..||++++|++|
T Consensus 395 ~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~~~d~~~~~~~~ 473 (517)
T 4ad8_A 395 SDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKVEKQ 473 (517)
T ss_dssp SSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHHHSSEEEEEECC
T ss_pred HhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEecc
Confidence 446 999999999999999999 9999999999999999999999999887789999999999999999999999654
No 95
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.81 E-value=7.2e-22 Score=220.24 Aligned_cols=167 Identities=14% Similarity=0.105 Sum_probs=119.1
Q ss_pred CCccccceeE-EEeCCCEEEEECCCCCcHHHHHHH--HhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcc
Q psy5743 414 DAVILNDLSL-KIQSGSMTSVIGSSGSGKSTLAML--LLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSG 490 (644)
Q Consensus 414 ~~~vL~~isl-~i~~G~~vaIvG~SGsGKSTLl~l--L~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~g 490 (644)
..++|++||+ .+++|++++|+||||||||||++. +.|+++|.+|.|+++|.+. ..+....++.+|+++|++...
T Consensus 24 g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~-~~~~~~~~~~~g~~~q~~~~~-- 100 (525)
T 1tf7_A 24 MIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET-PQDIIKNARSFGWDLAKLVDE-- 100 (525)
T ss_dssp CCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC-HHHHHHHHGGGTCCHHHHHHT--
T ss_pred CchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCC-HHHHHHHHHHcCCChHHhhcc--
Confidence 3579999999 999999999999999999999999 6899999999999999883 223445567899999986521
Q ss_pred cHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHc-cCCCEEEeeccc
Q psy5743 491 TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALI-KKSKILLLDEAT 569 (644)
Q Consensus 491 TIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll-~~p~IliLDEaT 569 (644)
+|+.+.... .+++.+++++..++.+ +.-.++++|- .+|++++|||||
T Consensus 101 ---~~l~~~~~~----~~~~~~~~l~~~~l~~-------------------------~~~~~~~~LS~g~~~~lilDe~t 148 (525)
T 1tf7_A 101 ---GKLFILDAS----PDPEGQEVVGGFDLSA-------------------------LIERINYAIQKYRARRVSIDSVT 148 (525)
T ss_dssp ---TSEEEEECC----CCSSCCSCCSSHHHHH-------------------------HHHHHHHHHHHHTCSEEEEECST
T ss_pred ---CcEEEEecC----cccchhhhhcccCHHH-------------------------HHHHHHHHHHHcCCCEEEECCHH
Confidence 223222110 0000001111112211 2222333332 358899999999
Q ss_pred CC-----CCHHHHHHHHHHHHHHc-CCceEEEEccCchHH---------hh-cCEEEEEeCC
Q psy5743 570 SA-----LDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTI---------RK-SNQICVLDKG 615 (644)
Q Consensus 570 Sa-----LD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i---------~~-aD~Iivl~~G 615 (644)
+. +|+...+.+.+.++++. .++|+|+|+|+++.+ .. ||+|++|++|
T Consensus 149 ~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~ 210 (525)
T 1tf7_A 149 SVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNV 210 (525)
T ss_dssp TTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEE
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEEE
Confidence 85 58888888888887764 489999999999874 44 9999999983
No 96
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.80 E-value=5.5e-20 Score=217.20 Aligned_cols=170 Identities=18% Similarity=0.187 Sum_probs=121.9
Q ss_pred ccEEEEE-----EEEEcCCCCCCccccceeEEEeC-------CCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCcc
Q psy5743 398 GEIDFNN-----IRFSYPSRPDAVILNDLSLKIQS-------GSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVD 465 (644)
Q Consensus 398 ~~I~~~~-----vsf~Y~~~~~~~vL~~isl~i~~-------G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~ 465 (644)
+.|+++| |++.|++ +.++++|++|++++ |++++|+||||||||||++.+ |+..+
T Consensus 749 ~~l~i~~~rHP~l~~~~~~--~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~----------- 814 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFG--DDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV----------- 814 (1022)
T ss_dssp CCEEEEEECCCC------C--CCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH-----------
T ss_pred ceEEEEeccccEEEEEecC--CceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH-----------
Confidence 3599999 9999953 35799999999987 999999999999999999999 99864
Q ss_pred CCCCChHHHhcceE-EEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCCh
Q psy5743 466 IKELDPMYLRSQIG-SVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSG 544 (644)
Q Consensus 466 i~~~~~~~lr~~i~-~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSG 544 (644)
..++| ||||++. .-|+.|||..- . ++.+.+. .| -..+|+
T Consensus 815 ---------~aqiG~~Vpq~~~--~l~v~d~I~~r------i------------g~~d~~~---~~--------~stf~~ 854 (1022)
T 2o8b_B 815 ---------MAQMGCYVPAEVC--RLTPIDRVFTR------L------------GASDRIM---SG--------ESTFFV 854 (1022)
T ss_dssp ---------HHTTTCCEESSEE--EECCCSBEEEE------C------------C--------------------CHHHH
T ss_pred ---------HhheeEEeccCcC--CCCHHHHHHHH------c------------CCHHHHh---hc--------hhhhHH
Confidence 34677 9999973 55777776421 1 1111111 12 235677
Q ss_pred hHHHHHHHHHHHccCCCEEEeecccCCCCHHH-HHHHHHHHHHHc-C-CceEEEEccCchHHhh-cCEEEEEeCCeEE--
Q psy5743 545 GQKQRIAIARALIKKSKILLLDEATSALDAEN-EYLVQSAIEKLI-E-GKTVLTIAHRLSTIRK-SNQICVLDKGKIV-- 618 (644)
Q Consensus 545 GQkQRiaLARAll~~p~IliLDEaTSaLD~~~-e~~i~~~l~~~~-~-~~TvI~IaHrl~~i~~-aD~Iivl~~G~iv-- 618 (644)
|+++ +++||++..+|+++||||||+++|+.. ...+.+.|+.+. + ++|+|++||.++.+.. +|++.++ +|++.
T Consensus 855 em~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~~~ 932 (1022)
T 2o8b_B 855 ELSE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMACM 932 (1022)
T ss_dssp HHHH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEEEC
T ss_pred HHHH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeEEEE
Confidence 6664 999999999999999999999999986 455666676664 3 7899999999998865 8998887 58887
Q ss_pred EecCh
Q psy5743 619 EIGSY 623 (644)
Q Consensus 619 e~Gt~ 623 (644)
+.|+.
T Consensus 933 ~~~~~ 937 (1022)
T 2o8b_B 933 VENEC 937 (1022)
T ss_dssp -----
T ss_pred EecCc
Confidence 55544
No 97
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.80 E-value=5.8e-20 Score=211.80 Aligned_cols=153 Identities=19% Similarity=0.355 Sum_probs=117.3
Q ss_pred CCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHH-------HHHHHHHHhhccch
Q psy5743 452 YDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSD-------IIHAAKEANAYGFV 524 (644)
Q Consensus 452 ~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~-------i~~a~~~a~l~~~i 524 (644)
+.|....|.++|++|.++ ...||.|++.|..+- ..+.++ +.+..+.. +++
T Consensus 432 l~~~~l~v~~~g~~i~q~------------------~~ltV~e~~~f~e~l--~l~~~~~~i~~~~~~ei~~Rl---~~L 488 (972)
T 2r6f_A 432 LKKESLAVLVGGKHIGEV------------------TAMSVTEALAFFDGL--ELTEKEAQIARLILREIRDRL---GFL 488 (972)
T ss_dssp BCTTTTTEESSSCBHHHH------------------HTSBHHHHHHHHHHC--CCCHHHHHHSHHHHHHHHHHH---HHH
T ss_pred cCHHHheeEECCCcHHHH------------------hhCCHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHH---HHh
Confidence 467888999999876543 456888888886432 133311 11111111 122
Q ss_pred hhhhcCcccc-ccCCCCCCChhHHHHHHHHHHHccCC--CEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCc
Q psy5743 525 IDFKNGFDTI-VGERGIMLSGGQKQRIAIARALIKKS--KILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRL 600 (644)
Q Consensus 525 ~~lp~Gl~T~-ige~G~~LSGGQkQRiaLARAll~~p--~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl 600 (644)
..+ |++.. ....-..|||||||||+||+||..+| ++|||||||++||+.....+.+.|+++. .+.|+|+|+||+
T Consensus 489 ~~v--GL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl 566 (972)
T 2r6f_A 489 QNV--GLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDE 566 (972)
T ss_dssp HHH--TCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCH
T ss_pred hhC--CCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCH
Confidence 322 44432 35556789999999999999999985 9999999999999999999999998875 478999999999
Q ss_pred hHHhhcCEEEEE------eCCeEEEecChhHHhcC
Q psy5743 601 STIRKSNQICVL------DKGKIVEIGSYAHLIKN 629 (644)
Q Consensus 601 ~~i~~aD~Iivl------~~G~ive~Gt~~eLl~~ 629 (644)
+.++.||+|++| ++|+++..|+++++++.
T Consensus 567 ~~i~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~~~ 601 (972)
T 2r6f_A 567 DTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMND 601 (972)
T ss_dssp HHHHSCSEEEEECSSSGGGCCSEEEEECTTTTTTC
T ss_pred HHHHhCCEEEEeCCCccCCCCEEEEecCHHHHHhh
Confidence 999999999999 79999999999999864
No 98
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.79 E-value=6.5e-19 Score=185.47 Aligned_cols=74 Identities=24% Similarity=0.406 Sum_probs=67.9
Q ss_pred CCCChhHHH------HHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhhcCEEEEE
Q psy5743 540 IMLSGGQKQ------RIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIRKSNQICVL 612 (644)
Q Consensus 540 ~~LSGGQkQ------RiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~~aD~Iivl 612 (644)
..||||||| |+++|||+..+|++|||||||++||+.+...+.+.|.++. .++|+|+|||+.+....||+|++|
T Consensus 247 ~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~~d~~~~l 326 (339)
T 3qkt_A 247 TFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIRI 326 (339)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEEEEE
T ss_pred HHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhCCEEEEE
Confidence 579999999 6788899999999999999999999999999999998864 467999999999988999999998
Q ss_pred e
Q psy5743 613 D 613 (644)
Q Consensus 613 ~ 613 (644)
+
T Consensus 327 ~ 327 (339)
T 3qkt_A 327 S 327 (339)
T ss_dssp E
T ss_pred E
Confidence 5
No 99
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.78 E-value=9.9e-21 Score=190.21 Aligned_cols=169 Identities=13% Similarity=0.132 Sum_probs=108.5
Q ss_pred CCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHH
Q psy5743 414 DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIY 493 (644)
Q Consensus 414 ~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIr 493 (644)
+.++|+|+||++++|+++||+||||||||||+++|.|++ |.+.++ ..++.+++++|+++...-|..
T Consensus 11 ~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~----------~~~~~i~~v~~d~~~~~l~~~ 76 (245)
T 2jeo_A 11 VDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE----------QRQRKVVILSQDRFYKVLTAE 76 (245)
T ss_dssp ------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC----------GGGCSEEEEEGGGGBCCCCHH
T ss_pred CceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc----------ccCCceEEEeCCcCccccCHh
Confidence 457999999999999999999999999999999999987 555544 367789999999754456899
Q ss_pred HHHhcCCCCC-----CCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecc
Q psy5743 494 ENILYGVNDS-----SSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEA 568 (644)
Q Consensus 494 eNI~~g~~~~-----~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEa 568 (644)
+|+.+..... ...+.+++.+.++. +..+.+..+ ..||+||+||+++ |++..+|+++|||||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~---------l~~~~~~~~----~~ls~g~~~r~~~-~~~~~~~~~lilDg~ 142 (245)
T 2jeo_A 77 QKAKALKGQYNFDHPDAFDNDLMHRTLKN---------IVEGKTVEV----PTYDFVTHSRLPE-TTVVYPADVVLFEGI 142 (245)
T ss_dssp HHHHHHTTCCCTTSGGGBCHHHHHHHHHH---------HHTTCCEEE----CCEETTTTEECSS-CEEECCCSEEEEECT
T ss_pred HhhhhhccCCCCCCcccccHHHHHHHHHH---------HHCCCCeec----ccccccccCccCc-eEEecCCCEEEEeCc
Confidence 9987532210 01223333333332 333445444 4699999999988 688999999999998
Q ss_pred cCCCCHHHHHHHHHHHHHHcCCceEEEEccCc-hHHhhc-CEEEEEeCCeEEEecChhHHh
Q psy5743 569 TSALDAENEYLVQSAIEKLIEGKTVLTIAHRL-STIRKS-NQICVLDKGKIVEIGSYAHLI 627 (644)
Q Consensus 569 TSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl-~~i~~a-D~Iivl~~G~ive~Gt~~eLl 627 (644)
....|.. +.+. .+.|++++||.. ...+.. +.+ ++|+ +.+++.
T Consensus 143 ~~~~~~~--------l~~~-~~~~i~v~th~~~~~~r~~~r~~---~~G~-----~~e~~~ 186 (245)
T 2jeo_A 143 LVFYSQE--------IRDM-FHLRLFVDTDSDVRLSRRVLRDV---RRGR-----DLEQIL 186 (245)
T ss_dssp TTTTSHH--------HHTT-CSEEEEEECCHHHHHHHHHHHHT---C--------CHHHHH
T ss_pred cccccHH--------HHHh-cCeEEEEECCHHHHHHHHHHHHH---HcCC-----CHHHHH
Confidence 8777753 2232 378999999973 333333 334 6664 566665
No 100
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.78 E-value=1.5e-20 Score=198.42 Aligned_cols=166 Identities=22% Similarity=0.230 Sum_probs=122.5
Q ss_pred cccce-eEEEeCCCEEEEECCCCCcHHHHHHHHhccC--CCCC----cE-EEECCccCCCCChHHHhcceEEEecCCCCC
Q psy5743 417 ILNDL-SLKIQSGSMTSVIGSSGSGKSTLAMLLLRLY--DPQN----GK-ILIDGVDIKELDPMYLRSQIGSVSQEPTLF 488 (644)
Q Consensus 417 vL~~i-sl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~--~p~~----G~-I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf 488 (644)
.|+++ ++.+++|++++|+||+|||||||++.+++.+ +|++ |. |++|+.+.- .++++++++|++.++
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~------~~~~i~~i~q~~~~~ 192 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF------RPERIREIAQNRGLD 192 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC------CHHHHHHHHHTTTCC
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC------CHHHHHHHHHHcCCC
Confidence 46665 6899999999999999999999999999999 6666 68 999997752 256789999999999
Q ss_pred cccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHc-------cCCC
Q psy5743 489 SGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALI-------KKSK 561 (644)
Q Consensus 489 ~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll-------~~p~ 561 (644)
..++.+||.+... .+ |++|+|++.+||+++ .+|+
T Consensus 193 ~~~v~~ni~~~~~----~~-----------------------------------~~~~~~~l~~~~~~~~~lS~G~~~~~ 233 (349)
T 1pzn_A 193 PDEVLKHIYVARA----FN-----------------------------------SNHQMLLVQQAEDKIKELLNTDRPVK 233 (349)
T ss_dssp HHHHGGGEEEEEC----CS-----------------------------------HHHHHHHHHHHHHHHHHSSSSSSCEE
T ss_pred HHHHhhCEEEEec----CC-----------------------------------hHHHHHHHHHHHHHHHHhccccCCCC
Confidence 9999999988742 11 456788888888887 6899
Q ss_pred EEEeecccCCCCHHH------------HHHHHHHHHHHc--CCceEEEEccCchHHhh-cCEEEEEeCCeEEEecChhHH
Q psy5743 562 ILLLDEATSALDAEN------------EYLVQSAIEKLI--EGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHL 626 (644)
Q Consensus 562 IliLDEaTSaLD~~~------------e~~i~~~l~~~~--~~~TvI~IaHrl~~i~~-aD~Iivl~~G~ive~Gt~~eL 626 (644)
++|+||||+.+|++. -+.+...|.++. .+.|+|+++|....... ++.+.+...|++++.+.+..|
T Consensus 234 llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~~~~~rL 313 (349)
T 1pzn_A 234 LLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSATLRV 313 (349)
T ss_dssp EEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---------------CCCCCTTCSEEE
T ss_pred EEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcceEeecCcEEE
Confidence 999999999999863 234444555543 37899999998775532 345677788988888877766
Q ss_pred h
Q psy5743 627 I 627 (644)
Q Consensus 627 l 627 (644)
.
T Consensus 314 ~ 314 (349)
T 1pzn_A 314 Y 314 (349)
T ss_dssp E
T ss_pred E
Confidence 3
No 101
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.78 E-value=1.7e-19 Score=201.04 Aligned_cols=169 Identities=16% Similarity=0.065 Sum_probs=123.4
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
++.+++++.|++ - ..+| +..+++|++++|+|++|||||||++.++|...|. |+ +.+.
T Consensus 258 ~~~~~l~~g~~~-l-d~vL---~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~-----------------~vi~ 314 (525)
T 1tf7_A 258 SSNVRVSSGVVR-L-DEMC---GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KE-----------------RAIL 314 (525)
T ss_dssp CCCCEECCSCHH-H-HHHT---TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC-----------------CEEE
T ss_pred cccceeecChHH-H-HHHh---CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC-----------------CEEE
Confidence 455666665532 0 1233 3489999999999999999999999999999875 53 1245
Q ss_pred EEecCCCCCcccHHHHHh-cCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHcc
Q psy5743 480 SVSQEPTLFSGTIYENIL-YGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIK 558 (644)
Q Consensus 480 ~V~Q~~~Lf~gTIreNI~-~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~ 558 (644)
+++|++. .++++|.. +| .+.+++ ...++ ..........|||||+||+++||++..
T Consensus 315 ~~~ee~~---~~l~~~~~~~g------~~~~~~----~~~g~-----------~~~~~~~p~~LS~g~~q~~~~a~~l~~ 370 (525)
T 1tf7_A 315 FAYEESR---AQLLRNAYSWG------MDFEEM----ERQNL-----------LKIVCAYPESAGLEDHLQIIKSEINDF 370 (525)
T ss_dssp EESSSCH---HHHHHHHHTTS------CCHHHH----HHTTS-----------EEECCCCGGGSCHHHHHHHHHHHHHTT
T ss_pred EEEeCCH---HHHHHHHHHcC------CCHHHH----HhCCC-----------EEEEEeccccCCHHHHHHHHHHHHHhh
Confidence 6667762 35666653 22 232221 12222 222233345799999999999999999
Q ss_pred CCCEEEeecccCCCCHH-----HHHHHHHHHHHHc-CCceEEEEccCc----------hHH-hhcCEEEEEeCCe
Q psy5743 559 KSKILLLDEATSALDAE-----NEYLVQSAIEKLI-EGKTVLTIAHRL----------STI-RKSNQICVLDKGK 616 (644)
Q Consensus 559 ~p~IliLDEaTSaLD~~-----~e~~i~~~l~~~~-~~~TvI~IaHrl----------~~i-~~aD~Iivl~~G~ 616 (644)
+|+++|+| ||++||.. ..+.+.+.++.+. .+.|+|+|+|.. ..+ ..||+|++|++|+
T Consensus 371 ~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 371 KPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp CCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred CCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 99999999 99999998 7888877776653 478999999998 555 4589999999887
No 102
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.78 E-value=7.3e-19 Score=191.22 Aligned_cols=73 Identities=26% Similarity=0.336 Sum_probs=68.0
Q ss_pred CCChhHHHHHHHHHHHc----cCCCEEEeecccCCCCHHHHHHHHHHHHHHcC-CceEEEEccCchHHhhcCEEEEEe
Q psy5743 541 MLSGGQKQRIAIARALI----KKSKILLLDEATSALDAENEYLVQSAIEKLIE-GKTVLTIAHRLSTIRKSNQICVLD 613 (644)
Q Consensus 541 ~LSGGQkQRiaLARAll----~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~-~~TvI~IaHrl~~i~~aD~Iivl~ 613 (644)
.||||||||++|||+|. ++|+++|||||||+||+.+...+.+.|.+... +.++|+|||+...+..||+++++.
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~~~d~~~~~~ 410 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGVY 410 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEEE
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 49999999999999998 68999999999999999999999999988753 679999999999999999999986
No 103
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.77 E-value=6.6e-19 Score=161.99 Aligned_cols=88 Identities=22% Similarity=0.336 Sum_probs=76.5
Q ss_pred Cccccc-----cCCCCCCChhHHHHHHHH------HHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEc
Q psy5743 530 GFDTIV-----GERGIMLSGGQKQRIAIA------RALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIA 597 (644)
Q Consensus 530 Gl~T~i-----ge~G~~LSGGQkQRiaLA------RAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~Ia 597 (644)
+|++.+ .....+||||||||++|| ||+.++|+++||||||++||+++...+.+.|.++. .++|+|+||
T Consensus 41 ~~~l~~~~~~~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivs 120 (148)
T 1f2t_B 41 KVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVS 120 (148)
T ss_dssp SEEEEEEETTEEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEE
T ss_pred ceEEEeccccccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEE
Confidence 677765 234578999999999876 99999999999999999999999999999998864 478999999
Q ss_pred cCchHHhhcCEEEEE--eCCeE
Q psy5743 598 HRLSTIRKSNQICVL--DKGKI 617 (644)
Q Consensus 598 Hrl~~i~~aD~Iivl--~~G~i 617 (644)
|++.....||+|++| ++|..
T Consensus 121 H~~~~~~~~d~ii~l~~~~g~s 142 (148)
T 1f2t_B 121 HDEELKDAADHVIRISLENGSS 142 (148)
T ss_dssp SCGGGGGGCSEEEEEEEETTEE
T ss_pred ChHHHHHhCCEEEEEEcCCCeE
Confidence 999877889999999 56643
No 104
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.77 E-value=1.4e-18 Score=201.15 Aligned_cols=139 Identities=24% Similarity=0.405 Sum_probs=108.9
Q ss_pred CCCcccHHHHHhcCCCCCCCCCHH----------HHHHHHHHHhhccchhhhhcCcccc-ccCCCCCCChhHHHHHHHHH
Q psy5743 486 TLFSGTIYENILYGVNDSSSVTKS----------DIIHAAKEANAYGFVIDFKNGFDTI-VGERGIMLSGGQKQRIAIAR 554 (644)
Q Consensus 486 ~Lf~gTIreNI~~g~~~~~~~~~~----------~i~~a~~~a~l~~~i~~lp~Gl~T~-ige~G~~LSGGQkQRiaLAR 554 (644)
.+++.||.|++.|..+- ..+.+ ++.+.+ +++..+ |++.. ....-..|||||||||+||+
T Consensus 465 q~~~ltV~e~l~f~enl--~l~~~~~~i~~~i~~ei~~Rl------~~L~~v--GL~~l~l~r~~~tLSGGEkQRV~LA~ 534 (993)
T 2ygr_A 465 EVCELSIADCADFLNAL--TLGPREQAIAGQVLKEIRSRL------GFLLDV--GLEYLSLSRAAATLSGGEAQRIRLAT 534 (993)
T ss_dssp CSSHHHHHHHHHTTTTT--TSCHHHHHHHHHHHHHHHHHH------HHHHHH--TGGGSCTTCBGGGCCHHHHHHHHHHH
T ss_pred HHhhCCHHHHHHHHHhc--CCCHHHhHHHHHHHHHHHHHH------HHHhhC--CCCccccCCCcccCCHHHHHHHHHHH
Confidence 46778999999996442 23442 222211 122222 44432 45566789999999999999
Q ss_pred HHccC--CCEEEeecccCCCCHHHHHHHHHHHHHHc-CCceEEEEccCchHHhhcCEEEEE------eCCeEEEecChhH
Q psy5743 555 ALIKK--SKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIRKSNQICVL------DKGKIVEIGSYAH 625 (644)
Q Consensus 555 All~~--p~IliLDEaTSaLD~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i~~aD~Iivl------~~G~ive~Gt~~e 625 (644)
||..+ |++|||||||++||+.....+.+.|+++. .+.|+|+|+||++.++.||+|++| ++|+++..|++++
T Consensus 535 aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~~ADrIi~Lgp~aG~~gG~iv~~G~~~e 614 (993)
T 2ygr_A 535 QIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDEDTIEHADWIVDIGPGAGEHGGRIVHSGPYDE 614 (993)
T ss_dssp HHTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHTCSEEEEECSSSGGGCCSCCEEECHHH
T ss_pred HHhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCHHHHHhCCEEEEecCccccCCCEEEEeeCHHH
Confidence 99998 59999999999999999999999988874 489999999999999999999999 6999999999999
Q ss_pred HhcCCCcHH
Q psy5743 626 LIKNPNSMF 634 (644)
Q Consensus 626 Ll~~~~~~y 634 (644)
+++.++...
T Consensus 615 ~~~~~~~lt 623 (993)
T 2ygr_A 615 LLRNKDSIT 623 (993)
T ss_dssp HHHCTTCHH
T ss_pred hhhhhHHHH
Confidence 987544443
No 105
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.77 E-value=1.7e-19 Score=206.97 Aligned_cols=147 Identities=18% Similarity=0.168 Sum_probs=115.0
Q ss_pred CccEEEEEEEEEcCCC--CCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCC-CCCcEEEECCccCCCCChHH
Q psy5743 397 KGEIDFNNIRFSYPSR--PDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD-PQNGKILIDGVDIKELDPMY 473 (644)
Q Consensus 397 ~~~I~~~~vsf~Y~~~--~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~-p~~G~I~idg~~i~~~~~~~ 473 (644)
.+.|++++. ++|-- .++++++|+||+ |++++|+||||||||||+++++|+.. |+.|.+. + .
T Consensus 548 ~~~i~i~~~--rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v----p-------a 611 (765)
T 1ewq_A 548 GDRLQIRAG--RHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV----P-------A 611 (765)
T ss_dssp SSSEEEEEE--CCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB----S-------S
T ss_pred CCcEEEEEe--ECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee----e-------h
Confidence 456999988 44421 236799999999 99999999999999999999999974 7778753 1 1
Q ss_pred HhcceEEEecCCCCCcc-cHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHH
Q psy5743 474 LRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAI 552 (644)
Q Consensus 474 lr~~i~~V~Q~~~Lf~g-TIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaL 552 (644)
.+..+++++| +|.. |+.||+.. ++|+|++|++.+
T Consensus 612 ~~~~i~~v~~---i~~~~~~~d~l~~------------------------------------------g~S~~~~e~~~l 646 (765)
T 1ewq_A 612 EEAHLPLFDG---IYTRIGASDDLAG------------------------------------------GKSTFMVEMEEV 646 (765)
T ss_dssp SEEEECCCSE---EEEECCC------------------------------------------------CCSHHHHHHHHH
T ss_pred hccceeeHHH---hhccCCHHHHHHh------------------------------------------cccHHHHHHHHH
Confidence 2456888887 5543 55665532 258899999999
Q ss_pred HHHH--ccCCCEEEeecc---cCCCCHHHH-HHHHHHHHHHcCCceEEEEccCchHHhhc
Q psy5743 553 ARAL--IKKSKILLLDEA---TSALDAENE-YLVQSAIEKLIEGKTVLTIAHRLSTIRKS 606 (644)
Q Consensus 553 ARAl--l~~p~IliLDEa---TSaLD~~~e-~~i~~~l~~~~~~~TvI~IaHrl~~i~~a 606 (644)
|+++ ..+|+++||||| ||++|..+. ..+.+.|.+ .++|+|++||+.+....+
T Consensus 647 a~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~--~g~~vl~~TH~~~l~~~~ 704 (765)
T 1ewq_A 647 ALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE--RRAYTLFATHYFELTALG 704 (765)
T ss_dssp HHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH--HTCEEEEECCCHHHHTCC
T ss_pred HHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHhh
Confidence 9999 999999999999 999999875 578888877 489999999999887655
No 106
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.77 E-value=1.5e-18 Score=202.56 Aligned_cols=167 Identities=17% Similarity=0.166 Sum_probs=121.5
Q ss_pred ccEEEEEEEEEcCCC--CCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHH--------hccCCCCCcEEEECCccCC
Q psy5743 398 GEIDFNNIRFSYPSR--PDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLL--------LRLYDPQNGKILIDGVDIK 467 (644)
Q Consensus 398 ~~I~~~~vsf~Y~~~--~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL--------~g~~~p~~G~I~idg~~i~ 467 (644)
+.|++++...-+-+. .++.+++|++|++++|++++|+|||||||||+++.+ .|.+-|.++..
T Consensus 630 ~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~-------- 701 (934)
T 3thx_A 630 GRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE-------- 701 (934)
T ss_dssp CEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE--------
T ss_pred cceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc--------
Confidence 458888876555321 235799999999999999999999999999999999 66665554322
Q ss_pred CCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHH
Q psy5743 468 ELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQK 547 (644)
Q Consensus 468 ~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQk 547 (644)
++.+ ..+|. .+| +.+ .-..++|+|++
T Consensus 702 ----------~~~~---d~i~~-------~ig--------------------~~d--------------~l~~~lStf~~ 727 (934)
T 3thx_A 702 ----------VSIV---DCILA-------RVG--------------------AGD--------------SQLKGVSTFMA 727 (934)
T ss_dssp ----------EECC---SEEEE-------ECC-------------------------------------------CHHHH
T ss_pred ----------chHH---HHHHH-------hcC--------------------chh--------------hHHHhHhhhHH
Confidence 1100 00111 011 000 01135788898
Q ss_pred HHHHHHHHH--ccCCCEEEeecccCCCCHHHHHHH-HHHHHHHc--CCceEEEEccCchHHhhcCEEEEEeCCeEEEecC
Q psy5743 548 QRIAIARAL--IKKSKILLLDEATSALDAENEYLV-QSAIEKLI--EGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGS 622 (644)
Q Consensus 548 QRiaLARAl--l~~p~IliLDEaTSaLD~~~e~~i-~~~l~~~~--~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt 622 (644)
++..+|+++ ..+|+++||||||+++|+.....+ ...++.+. .++|+|++||..+....||++..+++|++...|+
T Consensus 728 e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~~v~ng~v~~~~~ 807 (934)
T 3thx_A 728 EMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTT 807 (934)
T ss_dssp HHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCTTEEEEEEEEEEE
T ss_pred HHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccceeEeeEEEEEec
Confidence 888899888 999999999999999999877666 44444443 3799999999999999999999999999998887
Q ss_pred hhHH
Q psy5743 623 YAHL 626 (644)
Q Consensus 623 ~~eL 626 (644)
.+++
T Consensus 808 ~~~l 811 (934)
T 3thx_A 808 EETL 811 (934)
T ss_dssp TTEE
T ss_pred CCcE
Confidence 7765
No 107
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.76 E-value=3.4e-21 Score=197.68 Aligned_cols=133 Identities=11% Similarity=0.023 Sum_probs=97.3
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCC
Q psy5743 426 QSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSS 505 (644)
Q Consensus 426 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~ 505 (644)
+++.+|+|+|+||||||||+++|.+++++. | . . ++.+.+|+||+++|++++++|+.++.++...
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g------~--------~-~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l 92 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y------G--------G-EKSIGYASIDDFYLTHEDQLKLNEQFKNNKL 92 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHH-H------G--------G-GSCEEEEEGGGGBCCHHHHHHHHHHTTTCGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhc-C------C--------C-CceEEEeccccccCChHHHHHHhccccccch
Confidence 367899999999999999999999999864 2 0 1 4566777999999999999999876421000
Q ss_pred CCHHHHHHHHHHHhhccchhhhhcCcccc------ccCCCCCCChhHHHHHHHH--HHHccCCCEEEeecccCCCCHHH
Q psy5743 506 VTKSDIIHAAKEANAYGFVIDFKNGFDTI------VGERGIMLSGGQKQRIAIA--RALIKKSKILLLDEATSALDAEN 576 (644)
Q Consensus 506 ~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~------ige~G~~LSGGQkQRiaLA--RAll~~p~IliLDEaTSaLD~~~ 576 (644)
.+....-++.....+.+++..++.|++|. +...+.++||||+||+++| |++ +|+|+|+||+|+++|++.
T Consensus 93 ~~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 93 LQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp GSSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred hhhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 00000011223445667888999998764 5567889999999999998 666 999999999999999864
No 108
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.76 E-value=2.7e-19 Score=184.74 Aligned_cols=163 Identities=21% Similarity=0.185 Sum_probs=112.0
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCCh----HHH--hcceEEEecCCCCCc-ccHHHHHhcC
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDP----MYL--RSQIGSVSQEPTLFS-GTIYENILYG 499 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~----~~l--r~~i~~V~Q~~~Lf~-gTIreNI~~g 499 (644)
+|++++|+|||||||||+++.|+|+++|++|+|.++|.|+..... ..| |..+++|+|++.++. .|+++|+.++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 799999999999999999999999999999999999999876542 334 457999999998776 4788898653
Q ss_pred CCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCC--EEEeecccCCCCHHHH
Q psy5743 500 VNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSK--ILLLDEATSALDAENE 577 (644)
Q Consensus 500 ~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~--IliLDEaTSaLD~~~e 577 (644)
. ..+.+..+.+.+...+.. ...++..++||.+||||+..+|+ ++.|| |+++.|.
T Consensus 181 ~----------------~~~~d~~llDt~G~~~~~----~~~~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~~~--- 236 (304)
T 1rj9_A 181 K----------------ARGYDLLFVDTAGRLHTK----HNLMEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQNG--- 236 (304)
T ss_dssp H----------------HHTCSEEEECCCCCCTTC----HHHHHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCTHH---
T ss_pred H----------------hCCCCEEEecCCCCCCch----HHHHHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHHHH---
Confidence 1 112222222222222211 12246677999999999999999 55566 5555433
Q ss_pred HHHHHHHHHHc--CCceEEEEccCchHHhhc----------CEEEEEeCCe
Q psy5743 578 YLVQSAIEKLI--EGKTVLTIAHRLSTIRKS----------NQICVLDKGK 616 (644)
Q Consensus 578 ~~i~~~l~~~~--~~~TvI~IaHrl~~i~~a----------D~Iivl~~G~ 616 (644)
.+.+.++. .+.|+|+|||...+.+.. -.|..+..|+
T Consensus 237 ---~~~~~~~~~~~~~t~iivTh~d~~a~gg~~l~i~~~~~~pi~~ig~Ge 284 (304)
T 1rj9_A 237 ---LEQAKKFHEAVGLTGVIVTKLDGTAKGGVLIPIVRTLKVPIKFVGVGE 284 (304)
T ss_dssp ---HHHHHHHHHHHCCSEEEEECTTSSCCCTTHHHHHHHHCCCEEEEECSS
T ss_pred ---HHHHHHHHHHcCCcEEEEECCcccccccHHHHHHHHHCCCeEEEeCCC
Confidence 33332221 278999999986543222 3566666665
No 109
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.76 E-value=5e-19 Score=175.31 Aligned_cols=147 Identities=22% Similarity=0.265 Sum_probs=105.0
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhccCCC-------CCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHH
Q psy5743 424 KIQSGSMTSVIGSSGSGKSTLAMLLLRLYDP-------QNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENI 496 (644)
Q Consensus 424 ~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p-------~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI 496 (644)
-+++|++++|+||||||||||++.|+|.+.| ..|.|++++.+. .+ ++++++++|+..++..|+.||+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~--~~----~~~i~~~~~~~~~~~~~~~~~~ 94 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT--FR----PERIREIAQNRGLDPDEVLKHI 94 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC--CC----HHHHHHHHHHTTSCHHHHHHTE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC--CC----HHHHHHHHHHcCCCHHHHhhcE
Confidence 6999999999999999999999999997665 455888988652 11 2357788898888888999999
Q ss_pred hcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHc-------cCCCEEEeeccc
Q psy5743 497 LYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALI-------KKSKILLLDEAT 569 (644)
Q Consensus 497 ~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll-------~~p~IliLDEaT 569 (644)
.+..+. +..+ |++++..+++++ .+|+++++||||
T Consensus 95 ~~~~~~----~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~llilDe~~ 135 (231)
T 4a74_A 95 YVARAF----NSNH-----------------------------------QMLLVQQAEDKIKELLNTDRPVKLLIVDSLT 135 (231)
T ss_dssp EEEECC----SHHH-----------------------------------HHHHHHHHHHHHHHHTTSSSCEEEEEEETSS
T ss_pred EEEecC----ChHH-----------------------------------HHHHHHHHHHHHHHhcccCCceeEEEECChH
Confidence 887432 2111 222233333333 489999999999
Q ss_pred CCCCHH-------HH-----HHHHHHHHHHc--CCceEEEEcc----CchHHh-hcCEEEEEeCC
Q psy5743 570 SALDAE-------NE-----YLVQSAIEKLI--EGKTVLTIAH----RLSTIR-KSNQICVLDKG 615 (644)
Q Consensus 570 SaLD~~-------~e-----~~i~~~l~~~~--~~~TvI~IaH----rl~~i~-~aD~Iivl~~G 615 (644)
+.+|++ .+ ..+.+.|.++. .++|+|+||| ....+. .||++++|++|
T Consensus 136 ~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 136 SHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp HHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEEC
T ss_pred HHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEec
Confidence 999984 22 25666665543 3799999999 444464 58999999975
No 110
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.76 E-value=1.8e-20 Score=183.07 Aligned_cols=169 Identities=14% Similarity=0.188 Sum_probs=105.4
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccC-----CCCCcEEEEC-------CccCC
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLY-----DPQNGKILID-------GVDIK 467 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~-----~p~~G~I~id-------g~~i~ 467 (644)
|+++|++|+|+ .+++++ |++++|.+++|+|++|||||||++.|+|.. .|+.|.+... +..+-
T Consensus 4 l~~~~~~~~~~----~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~ 77 (210)
T 1pui_A 4 LNYQQTHFVMS----APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLV 77 (210)
T ss_dssp -------CEEE----ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEE
T ss_pred hhhhhhhheee----cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEE
Confidence 78999999995 257888 899999999999999999999999999998 8898987652 22221
Q ss_pred ---CC--------ChHHHhcceEEEecCCCCCcc-cHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccc-c
Q psy5743 468 ---EL--------DPMYLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDT-I 534 (644)
Q Consensus 468 ---~~--------~~~~lr~~i~~V~Q~~~Lf~g-TIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T-~ 534 (644)
.+ ..+.|++.++++.|+...+++ ++..|+..+.. ..++++.+.++.. +... .
T Consensus 78 Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~----~~~~~~~~~~~~~-----------~~~~~~ 142 (210)
T 1pui_A 78 DLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLK----DLDQQMIEWAVDS-----------NIAVLV 142 (210)
T ss_dssp ECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCC----HHHHHHHHHHHHT-----------TCCEEE
T ss_pred ECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCc----hhHHHHHHHHHHc-----------CCCeEE
Confidence 11 113455556666665443333 33333332210 1123343333322 2222 2
Q ss_pred ccCCCCCCChhHHHH-HHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC
Q psy5743 535 VGERGIMLSGGQKQR-IAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE 589 (644)
Q Consensus 535 ige~G~~LSGGQkQR-iaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~ 589 (644)
++..-..+|+||+|| +..||+++++|+++++||||||+|.++...+.+.|.+..+
T Consensus 143 v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 143 LLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred EEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence 355555789999999 8999999999999999999999999999999999877643
No 111
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.75 E-value=5.8e-21 Score=215.69 Aligned_cols=190 Identities=17% Similarity=0.249 Sum_probs=124.2
Q ss_pred cEEEEEEEEEcCCCCCCccccce----------eEEEeCCCEEEEECCCCCcHHHHHHHHhccCCC-CCcEEEECCccCC
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDL----------SLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDP-QNGKILIDGVDIK 467 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~i----------sl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p-~~G~I~idg~~i~ 467 (644)
.++++|+++.|++. .+++|+.+ ++++|. +|||||||||||||+++|+|++.| ++|.|.++|.++.
T Consensus 10 ~i~~~~l~~~~~~~-~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~ 85 (608)
T 3szr_A 10 SVAENNLCSQYEEK-VRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLK 85 (608)
T ss_dssp ----------CHHH-HHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEE
T ss_pred hhhhhhhhHHHHHH-HHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEE
Confidence 58899999999642 23455544 366765 999999999999999999999988 7999999999963
Q ss_pred CC---ChHHHhcceEEEecCCCCCc-ccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCC
Q psy5743 468 EL---DPMYLRSQIGSVSQEPTLFS-GTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLS 543 (644)
Q Consensus 468 ~~---~~~~lr~~i~~V~Q~~~Lf~-gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LS 543 (644)
.. ....+|+.++|++|++.+++ .|++|||.++. ...+. .+..+|
T Consensus 86 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~---------------~~~~~-----------------~~~~~s 133 (608)
T 3szr_A 86 LKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQ---------------NAIAG-----------------EGMGIS 133 (608)
T ss_dssp EEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHH---------------HHHHC-----------------SSSCCC
T ss_pred EecCCccccceeEEeeecccccCCCHHHHHHHHHHHH---------------HHhcC-----------------Cccccc
Confidence 22 24578999999999998876 58999986531 11110 011112
Q ss_pred hhHHHHHHHHHHHccCCCEEEeecc------cCCCCHHHHHHHHHHHHHHcC---CceEEEEccCchH--------Hhh-
Q psy5743 544 GGQKQRIAIARALIKKSKILLLDEA------TSALDAENEYLVQSAIEKLIE---GKTVLTIAHRLST--------IRK- 605 (644)
Q Consensus 544 GGQkQRiaLARAll~~p~IliLDEa------TSaLD~~~e~~i~~~l~~~~~---~~TvI~IaHrl~~--------i~~- 605 (644)
++++.++.+...+|+++++||| |++||+..++.+.+.+.++.+ +.++++++|.++. ++.
T Consensus 134 ---~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v 210 (608)
T 3szr_A 134 ---HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEV 210 (608)
T ss_dssp ---SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHH
T ss_pred ---hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHH
Confidence 2444555555668999999999 999999999999999988542 4678899999763 222
Q ss_pred ----cCEEEEEeCCeEEEecChhHHh
Q psy5743 606 ----SNQICVLDKGKIVEIGSYAHLI 627 (644)
Q Consensus 606 ----aD~Iivl~~G~ive~Gt~~eLl 627 (644)
...|.|+.++..++.|+.++++
T Consensus 211 ~~~g~rtI~VlTK~Dlv~~g~~~~~~ 236 (608)
T 3szr_A 211 DPEGDRTIGILTKPDLVDKGTEDKVV 236 (608)
T ss_dssp CSSCCSEEEEEECGGGSSSSSTTCCC
T ss_pred hhcCCceEEEecchhhcCcccHHHHH
Confidence 3568999999999989876554
No 112
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.73 E-value=6.6e-19 Score=185.56 Aligned_cols=147 Identities=22% Similarity=0.215 Sum_probs=109.8
Q ss_pred EEEEEEcCCCCCCccccceeE-------EEeCCCEEEEECCCCCcHHHHHHHHhccCCCC-CcEEEECCccCCCCChHHH
Q psy5743 403 NNIRFSYPSRPDAVILNDLSL-------KIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQ-NGKILIDGVDIKELDPMYL 474 (644)
Q Consensus 403 ~~vsf~Y~~~~~~~vL~~isl-------~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~-~G~I~idg~~i~~~~~~~l 474 (644)
.+++++|.. ...+.|+++.+ .+++|+.++|+||||||||||+++|+|+++|+ +|.|...+.++.- . +
T Consensus 92 ~~~~iR~~~-~~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~-~---~ 166 (356)
T 3jvv_A 92 AGAVFRTIP-SKVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEF-V---H 166 (356)
T ss_dssp EEEEEEEEC-CSCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCS-C---C
T ss_pred cEEEEEECC-CCCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHh-h---h
Confidence 578888865 35677888887 78899999999999999999999999999997 6777665544432 1 2
Q ss_pred hcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHH
Q psy5743 475 RSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIAR 554 (644)
Q Consensus 475 r~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLAR 554 (644)
+...++++|.+.-.. . .+-.+ +|||
T Consensus 167 ~~~~~~v~q~~~~~~------------~---~~~~~----------------------------------------~La~ 191 (356)
T 3jvv_A 167 ESKKCLVNQREVHRD------------T---LGFSE----------------------------------------ALRS 191 (356)
T ss_dssp CCSSSEEEEEEBTTT------------B---SCHHH----------------------------------------HHHH
T ss_pred hccccceeeeeeccc------------c---CCHHH----------------------------------------HHHH
Confidence 233455555432110 0 11111 9999
Q ss_pred HHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCC
Q psy5743 555 ALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKG 615 (644)
Q Consensus 555 All~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G 615 (644)
||..+|+++++|||| |.++...+.++ ...++|+++++|..+.+..+||+++|..|
T Consensus 192 aL~~~PdvillDEp~---d~e~~~~~~~~---~~~G~~vl~t~H~~~~~~~~dRli~l~~~ 246 (356)
T 3jvv_A 192 ALREDPDIILVGEMR---DLETIRLALTA---AETGHLVFGTLHTTSAAKTIDRVVDVFPA 246 (356)
T ss_dssp HTTSCCSEEEESCCC---SHHHHHHHHHH---HHTTCEEEEEESCSSHHHHHHHHHHTSCH
T ss_pred HhhhCcCEEecCCCC---CHHHHHHHHHH---HhcCCEEEEEEccChHHHHHHHHhhhcCc
Confidence 999999999999999 77776655554 23489999999999999999999988543
No 113
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.73 E-value=1.3e-19 Score=181.98 Aligned_cols=180 Identities=13% Similarity=0.094 Sum_probs=109.3
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHh--ccCCCCCcEEEECCccCCCCChHHHhcc
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLL--RLYDPQNGKILIDGVDIKELDPMYLRSQ 477 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~--g~~~p~~G~I~idg~~i~~~~~~~lr~~ 477 (644)
++++++++.|++ -| .++.+ .|++|++++|+||||||||||++.|+ |+.++.+|.+++++.+... .....++.
T Consensus 7 ~~~~~i~tg~~~-lD-~~l~G---gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 80 (251)
T 2ehv_A 7 QPVRRVKSGIPG-FD-ELIEG---GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERAR-DLRREMAS 80 (251)
T ss_dssp -CCCEECCSCTT-TG-GGTTT---SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHH-HHHHHHHT
T ss_pred cccceeecCCHh-HH-HHhcC---CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHH-HHHHHHHH
Confidence 566777777753 12 23443 79999999999999999999999999 7767788888888754321 12233456
Q ss_pred eEEEecCCCCCc-ccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHH
Q psy5743 478 IGSVSQEPTLFS-GTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARAL 556 (644)
Q Consensus 478 i~~V~Q~~~Lf~-gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAl 556 (644)
+++++|+...+. -++.++...... ....+. ... -...+-++.++-..+..-
T Consensus 81 ~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~--------------------~~~----~~~~~~~~~~~~~~~~l~ 132 (251)
T 2ehv_A 81 FGWDFEKYEKEGKIAIVDGVSSVVG----LPSEEK--------------------FVL----EDRFNVDNFLRYIYRVVK 132 (251)
T ss_dssp TTCCHHHHHHTTSEEEEC-----------------------------------------------CCHHHHHHHHHHHHH
T ss_pred cCCChHHHhhcCCEEEEEccccccc----cccccc--------------------eec----cCcccHHHHHHHHHHHHH
Confidence 777777643221 122222211100 000000 000 001223444444444444
Q ss_pred ccCCCEEEeecccCCCC-----HHHHHHHHHHHHHHc-CCceEEEEccCchHH----------hhc-CEEEEEe
Q psy5743 557 IKKSKILLLDEATSALD-----AENEYLVQSAIEKLI-EGKTVLTIAHRLSTI----------RKS-NQICVLD 613 (644)
Q Consensus 557 l~~p~IliLDEaTSaLD-----~~~e~~i~~~l~~~~-~~~TvI~IaHrl~~i----------~~a-D~Iivl~ 613 (644)
..+|++++|||||+.+| ....+.+.+.++.+. .++|+|++||.++.. ..| |+|++|+
T Consensus 133 ~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~ 206 (251)
T 2ehv_A 133 AINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred hhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCCcccccccChhhEeeeEEEEEe
Confidence 57999999999999997 556665776666553 389999999999886 567 9999995
No 114
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.73 E-value=1.1e-17 Score=157.83 Aligned_cols=79 Identities=24% Similarity=0.277 Sum_probs=72.0
Q ss_pred CCCCChhHHHHHHHHHHHc----cCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEE--E
Q psy5743 539 GIMLSGGQKQRIAIARALI----KKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICV--L 612 (644)
Q Consensus 539 G~~LSGGQkQRiaLARAll----~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iiv--l 612 (644)
...||||||||++||||+. ++|+++||||||++||+.+++.+.+.|++..++.++|+|||+..++..||+|+. +
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~~~ad~i~~v~~ 141 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMMANADKIIGVSM 141 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHHHhCCEEEEEEe
Confidence 3679999999999999995 678999999999999999999999999998888999999999999999999985 4
Q ss_pred eCCeE
Q psy5743 613 DKGKI 617 (644)
Q Consensus 613 ~~G~i 617 (644)
++|..
T Consensus 142 ~~g~s 146 (173)
T 3kta_B 142 RDGVS 146 (173)
T ss_dssp ETTEE
T ss_pred cCCEE
Confidence 57754
No 115
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.72 E-value=3.2e-19 Score=191.45 Aligned_cols=166 Identities=16% Similarity=0.162 Sum_probs=101.8
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcc
Q psy5743 398 GEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQ 477 (644)
Q Consensus 398 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~ 477 (644)
+.|+++|++++|++ ..+++|+||+| +|+|+||||||||++.|+|...|..| .+|.++.... ...++.
T Consensus 10 ~~l~~~~l~~~y~~---~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~---~~~~~~~~~~-t~~~~~ 76 (418)
T 2qag_C 10 GYVGFANLPNQVYR---KSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE---YPGPSHRIKK-TVQVEQ 76 (418)
T ss_dssp -----CCCCCCTTT---TTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC---CCSCC------CCEEEE
T ss_pred CcEEEEecceeECC---EEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC---CCCcccCCcc-ceeeee
Confidence 35899999999963 46999999998 99999999999999999999987666 2444433211 112457
Q ss_pred eEEEecCCCCC-cccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHH
Q psy5743 478 IGSVSQEPTLF-SGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARAL 556 (644)
Q Consensus 478 i~~V~Q~~~Lf-~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAl 556 (644)
+++++|++.++ .-||.||+.++.. .+.++.++.+ .+++.+ .++++.+||++||||+
T Consensus 77 i~~v~q~~~~~~~Ltv~Dt~g~~~~----~~~~~~~~~i-----~~~i~~--------------~~~~~l~qr~~IaRal 133 (418)
T 2qag_C 77 SKVLIKEGGVQLLLTIVDTPGFGDA----VDNSNCWQPV-----IDYIDS--------------KFEDYLNAESRVNRRQ 133 (418)
T ss_dssp EECC------CEEEEEEECC---------------CHHH-----HHHHHH--------------HHHHHTTTSCC-CCCC
T ss_pred EEEEEecCCcccceeeeechhhhhh----ccchhhHHHH-----HHHHHH--------------HHHHHHHHHHHHHHHh
Confidence 99999998877 6799999998853 2222222221 112221 2334567899999999
Q ss_pred ccCCC---EEEeeccc-CCCCHHHHHHHHHHHHHHcCCceEEEEccCchHH
Q psy5743 557 IKKSK---ILLLDEAT-SALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTI 603 (644)
Q Consensus 557 l~~p~---IliLDEaT-SaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i 603 (644)
+++|+ ++++|||| ++||+... .+++ ++..+.++|+|.|..+++
T Consensus 134 ~~d~~~~vlL~ldePt~~~L~~~d~-~~lk---~L~~~v~iIlVinK~Dll 180 (418)
T 2qag_C 134 MPDNRVQCCLYFIAPSGHGLKPLDI-EFMK---RLHEKVNIIPLIAKADTL 180 (418)
T ss_dssp CCCC-CCEEEEECCC-CCSCCHHHH-HHHH---HHTTTSEEEEEEESTTSS
T ss_pred ccCCCeeEEEEEecCcccCCCHHHH-HHHH---HHhccCcEEEEEEcccCc
Confidence 99999 99999999 58998764 3333 344578899999987764
No 116
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.69 E-value=2.3e-20 Score=182.71 Aligned_cols=118 Identities=17% Similarity=0.116 Sum_probs=92.9
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCC-CCC
Q psy5743 425 IQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGV-NDS 503 (644)
Q Consensus 425 i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~-~~~ 503 (644)
.++|++++|+||||||||||+++|.|+++|+ | ..+++|+||++.++.+.++|+.... .+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g------------------~~~g~v~~d~~~~~~~~~~~~~~~~~~~- 78 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G------------------LPAEVVPMDGFHLDNRLLEPRGLLPRKG- 78 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T------------------CCEEEEESGGGBCCHHHHGGGTCGGGTT-
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C------------------CceEEEecCCCcCCHHHHHHhcccccCC-
Confidence 4789999999999999999999999999886 5 2688999999999988888874211 00
Q ss_pred CCCCHHHHHHHHHHHhhccchhhhhcC--ccccccCCCCCCChhHHHHHHHH-HHHccCCCEEEeeccc
Q psy5743 504 SSVTKSDIIHAAKEANAYGFVIDFKNG--FDTIVGERGIMLSGGQKQRIAIA-RALIKKSKILLLDEAT 569 (644)
Q Consensus 504 ~~~~~~~i~~a~~~a~l~~~i~~lp~G--l~T~ige~G~~LSGGQkQRiaLA-RAll~~p~IliLDEaT 569 (644)
. ..+.....+.+++..++.| ++++++++|..+||||+||+++| |+++.++.++++|||.
T Consensus 79 --~-----~~~~~~~~~~~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~ 140 (208)
T 3c8u_A 79 --A-----PETFDFEGFQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPG 140 (208)
T ss_dssp --S-----GGGBCHHHHHHHHHHHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTT
T ss_pred --C-----CchhhHHHHHHHHHHHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCch
Confidence 0 0111222333445556655 78899999999999999999999 9999999999999984
No 117
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.69 E-value=5.4e-19 Score=182.72 Aligned_cols=164 Identities=16% Similarity=0.097 Sum_probs=80.9
Q ss_pred EEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhcc-CCCCCcEEEECCccCCCCChHHHhcceEEE
Q psy5743 403 NNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRL-YDPQNGKILIDGVDIKELDPMYLRSQIGSV 481 (644)
Q Consensus 403 ~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~-~~p~~G~I~idg~~i~~~~~~~lr~~i~~V 481 (644)
+|++.+|.+ +.++++++|+| +|+|+||+|||||++.|.|. ..|++| |.++|.++.. .. . ++.++++
T Consensus 2 ~~l~~~~~~---~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~-t~-~-~~~~~~~ 68 (301)
T 2qnr_A 2 SNLPNQVHR---KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIER-TV-Q-IEASTVE 68 (301)
T ss_dssp -------------------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEE
T ss_pred CCCcceECC---EEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCC-cc-e-EeeEEEE
Confidence 478888853 46899999998 99999999999999999998 889999 9999987754 11 1 4578999
Q ss_pred ecCCCCC-cccHHHHHhcCCCCCCCCCH-HHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccC
Q psy5743 482 SQEPTLF-SGTIYENILYGVNDSSSVTK-SDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKK 559 (644)
Q Consensus 482 ~Q~~~Lf-~gTIreNI~~g~~~~~~~~~-~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~ 559 (644)
+|++.++ .-|+.||..++.. .+. ++.....+. +.. -.+..+ .++|||||||+.+|||+.
T Consensus 69 ~q~~~~~~~ltv~Dt~g~~~~----~~~~e~~~~l~~~------l~~---~~~~~~----~~~sgg~rqrv~~ara~~-- 129 (301)
T 2qnr_A 69 IEERGVKLRLTVVDTPGYGDA----INCRDCFKTIISY------IDE---QFERYL----HDESGLNRRHIIDNRVHC-- 129 (301)
T ss_dssp EC---CCEEEEEEEEC---------------CTTHHHH------HHH---HHHHHH----HHHTSSCCTTCCCCCCCE--
T ss_pred ecCCCcccCcchhhhhhhhhh----cCcHHHHHHHHHH------HHH---HHHHHH----HHhCHHhhhhhhhhhhhh--
Confidence 9987654 5689999888743 111 111111111 111 111222 358999999999999985
Q ss_pred CCEEEeecccCC-CCHHHHHHHHHHHHHHcCCceEEEEccCchH
Q psy5743 560 SKILLLDEATSA-LDAENEYLVQSAIEKLIEGKTVLTIAHRLST 602 (644)
Q Consensus 560 p~IliLDEaTSa-LD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~ 602 (644)
++++||||++ ||+... .+.+.+.+ ..+.++|+..|++.+
T Consensus 130 --ll~ldePt~~~Ld~~~~-~~l~~l~~-~~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 130 --CFYFISPFGHGLKPLDV-AFMKAIHN-KVNIVPVIAKADTLT 169 (301)
T ss_dssp --EEEEECSSSSSCCHHHH-HHHHHHTT-TSCEEEEECCGGGSC
T ss_pred --eeeeecCcccCCCHHHH-HHHHHHHh-cCCEEEEEEeCCCCC
Confidence 9999999986 999874 22222321 125688888898753
No 118
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.68 E-value=8.9e-17 Score=159.13 Aligned_cols=164 Identities=9% Similarity=0.058 Sum_probs=112.6
Q ss_pred CccccceeE-EEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhc---ceEEEecCCCCCcc
Q psy5743 415 AVILNDLSL-KIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRS---QIGSVSQEPTLFSG 490 (644)
Q Consensus 415 ~~vL~~isl-~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~---~i~~V~Q~~~Lf~g 490 (644)
-+.|+++.. .+++|+.++|+||+|||||||++.+++...+.+|.|.+.+.+. +.+.+++ .+++.+|+..
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~---- 81 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE---SRDSIIRQAKQFNWDFEEYI---- 81 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS---CHHHHHHHHHHTTCCCGGGB----
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc---CHHHHHHHHHHhcchHHHHh----
Confidence 456888887 8999999999999999999999999999988888888766543 2333322 2233222211
Q ss_pred cHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCcc-ccccCCCCCCChhHHHHHHHHHHHccCCC--EEEeec
Q psy5743 491 TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFD-TIVGERGIMLSGGQKQRIAIARALIKKSK--ILLLDE 567 (644)
Q Consensus 491 TIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~-T~ige~G~~LSGGQkQRiaLARAll~~p~--IliLDE 567 (644)
.+++.+-+ .....+. -.+- ...|.+|.++...+.+...+|+ ++++||
T Consensus 82 --~~~~~~~~-------------------------~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~llilDe 131 (235)
T 2w0m_A 82 --EKKLIIID-------------------------ALMKEKEDQWSL---VNLTPEELVNKVIEAKQKLGYGKARLVIDS 131 (235)
T ss_dssp --TTTEEEEE-------------------------CCC----CTTBC---SSCCHHHHHHHHHHHHHHHCSSCEEEEEET
T ss_pred --hCCEEEEe-------------------------ccccccCceeee---cCCCHHHHHHHHHHHHHhhCCCceEEEEEC
Confidence 00111110 0000000 0011 1348999998888887778999 999999
Q ss_pred ccCCC--CHHHHHHHHHHHHHHc--CCceEEEEccCc--------hHH-hhcCEEEEEeCC
Q psy5743 568 ATSAL--DAENEYLVQSAIEKLI--EGKTVLTIAHRL--------STI-RKSNQICVLDKG 615 (644)
Q Consensus 568 aTSaL--D~~~e~~i~~~l~~~~--~~~TvI~IaHrl--------~~i-~~aD~Iivl~~G 615 (644)
||+.+ |+.....+.+.|.++. .+.|+|+++|.. ..+ ..||+|++|++.
T Consensus 132 ~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 132 VSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp GGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred chHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 99888 9888888888887764 378999999998 334 569999999864
No 119
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.67 E-value=6.4e-18 Score=166.29 Aligned_cols=143 Identities=15% Similarity=0.162 Sum_probs=104.8
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhccCCC--CCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccH-----HHH
Q psy5743 423 LKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDP--QNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTI-----YEN 495 (644)
Q Consensus 423 l~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p--~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTI-----reN 495 (644)
-..++|+.++|+||||||||||+++|+|+++| ..|.|.+++.+.+. ..++.++|++|++.+|...+ .||
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~----~e~~gi~y~fq~~~~f~~~~~~~~f~E~ 86 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP----GEVHGEHYFFVNHDEFKEMISRDAFLEH 86 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT----TCCBTTTBEECCHHHHHHHHHTTCEEEE
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc----ccccCceEEECCHHHHHHHHhcCHHHHH
Confidence 45789999999999999999999999999986 78999999977653 24568999999988876533 244
Q ss_pred HhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHH
Q psy5743 496 ILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAE 575 (644)
Q Consensus 496 I~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~ 575 (644)
+.+... -|.| .+++ ++.++..++++||| ||+.
T Consensus 87 ~~~~~~----------------------------~yg~------------~~~~---v~~~l~~G~illLD-----LD~~ 118 (219)
T 1s96_A 87 AEVFGN----------------------------YYGT------------SREA---IEQVLATGVDVFLD-----IDWQ 118 (219)
T ss_dssp EEETTE----------------------------EEEE------------EHHH---HHHHHTTTCEEEEE-----CCHH
T ss_pred HHHHhc----------------------------cCCC------------CHHH---HHHHHhcCCeEEEE-----ECHH
Confidence 433210 0111 0121 34555667999999 9999
Q ss_pred HHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeCCeEEEecChhHHhc
Q psy5743 576 NEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIK 628 (644)
Q Consensus 576 ~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive~Gt~~eLl~ 628 (644)
+...+.+.+. +++|+++++|+++.+.. |+ ++.| .|+.+++.+
T Consensus 119 ~~~~i~~~l~---~~~tI~i~th~~~~l~~--Rl--~~rG----~~~~e~i~~ 160 (219)
T 1s96_A 119 GAQQIRQKMP---HARSIFILPPSKIELDR--RL--RGRG----QDSEEVIAK 160 (219)
T ss_dssp HHHHHHHHCT---TCEEEEEECSSHHHHHH--HH--HTTS----CSCHHHHHH
T ss_pred HHHHHHHHcc---CCEEEEEECCCHHHHHH--HH--HHcC----CCCHHHHHH
Confidence 9999998765 57899999999998876 43 6667 567777753
No 120
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.66 E-value=1.9e-18 Score=166.35 Aligned_cols=161 Identities=16% Similarity=0.023 Sum_probs=102.4
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCC
Q psy5743 424 KIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDS 503 (644)
Q Consensus 424 ~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~ 503 (644)
.+++|+.++|+||||||||||+++|+|. |..|.|.+||.++..... -++.++|++|++. .+.|+.+|+.+..
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~--~~~~~~~~~~~~~-~~~~v~~~l~~~~--- 76 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIK--HGRIDPWLPQSHQ-QNRMIMQIAADVA--- 76 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCC--SSCCCTTSSSHHH-HHHHHHHHHHHHH---
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhh--cccccCCccchhh-hhHHHHHHHHHHH---
Confidence 4789999999999999999999999998 788999999987643221 1345788888765 5678899986531
Q ss_pred CCCCHHHHHHHHHHHhhccchhhhh--cCcccc--ccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHH
Q psy5743 504 SSVTKSDIIHAAKEANAYGFVIDFK--NGFDTI--VGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYL 579 (644)
Q Consensus 504 ~~~~~~~i~~a~~~a~l~~~i~~lp--~Gl~T~--ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~ 579 (644)
+. ....+....++... .+++.. .+.....+|+||+||+++||++.++|+++ +|++..+.
T Consensus 77 ------~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~ 139 (191)
T 1zp6_A 77 ------GR---YAKEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVAD 139 (191)
T ss_dssp ------HH---HHHTSCEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHH
T ss_pred ------HH---HhccCCeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHH
Confidence 00 01111111111110 011111 12334579999999999999999999876 57776666
Q ss_pred HHHHHHHHcCCceEEEEccCchHHhhcCEE
Q psy5743 580 VQSAIEKLIEGKTVLTIAHRLSTIRKSNQI 609 (644)
Q Consensus 580 i~~~l~~~~~~~TvI~IaHrl~~i~~aD~I 609 (644)
+.+.+.++....++++.|+..+.-..+|+|
T Consensus 140 ~~~~~~~l~~~~~~~i~t~~~~~~~~~~~i 169 (191)
T 1zp6_A 140 LHSQFADLGAFEHHVLPVSGKDTDQALQSA 169 (191)
T ss_dssp HHHHTTCCGGGGGGEEECTTCCTTTTTTTT
T ss_pred HHHHHhccCcccccEEECCCCCHHHHHHHH
Confidence 666665443222344555543333334444
No 121
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.65 E-value=1.3e-18 Score=181.45 Aligned_cols=151 Identities=19% Similarity=0.172 Sum_probs=112.6
Q ss_pred CCEEEEECCCCCcHHHHHHHHhccC--------CCCCcEEEECCccCCCCC---------------hHHHhcceEEE---
Q psy5743 428 GSMTSVIGSSGSGKSTLAMLLLRLY--------DPQNGKILIDGVDIKELD---------------PMYLRSQIGSV--- 481 (644)
Q Consensus 428 G~~vaIvG~SGsGKSTLl~lL~g~~--------~p~~G~I~idg~~i~~~~---------------~~~lr~~i~~V--- 481 (644)
=+.++|+|+||||||||++.|+|++ .|+.|+|.+||.++...+ ..++++.++++
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~ 83 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDN 83 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHH
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhH
Confidence 3589999999999999999999998 889999999999998764 45678889988
Q ss_pred ecCCC-CCcccHHHHHhcCCCCCCCCCHHHHHHHH-------HHHhhccchh--hhhcCccccccCCCCCCChhHHHHHH
Q psy5743 482 SQEPT-LFSGTIYENILYGVNDSSSVTKSDIIHAA-------KEANAYGFVI--DFKNGFDTIVGERGIMLSGGQKQRIA 551 (644)
Q Consensus 482 ~Q~~~-Lf~gTIreNI~~g~~~~~~~~~~~i~~a~-------~~a~l~~~i~--~lp~Gl~T~ige~G~~LSGGQkQRia 551 (644)
+|++. .|+.++.||..++.|. .+.+.. +...+.+.+. ++.+..+... ++||||+||..
T Consensus 84 ~q~~~~~~~~~v~E~~~l~~p~-------~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~-----~ls~g~~Q~~~ 151 (318)
T 1nij_A 84 LDKGNIQFDRLVIECTGMADPG-------PIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMN-----QFTIAQSQVGY 151 (318)
T ss_dssp HHHTSCCCSEEEEEEETTCCHH-------HHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHH-----HCHHHHHHHHT
T ss_pred HhcCCCCCCEEEEeCCCCCCHH-------HHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHh-----hchHHHHHHHh
Confidence 68876 4789999999988542 222111 1112221111 1111112221 58999999999
Q ss_pred HHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCch
Q psy5743 552 IARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLS 601 (644)
Q Consensus 552 LARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~ 601 (644)
.+|+++.+|+++ ||| +.+.+.|+++.++.|+++++|+..
T Consensus 152 ad~ill~k~dl~--de~---------~~l~~~l~~l~~~~~ii~~sh~~~ 190 (318)
T 1nij_A 152 ADRILLTKTDVA--GEA---------EKLHERLARINARAPVYTVTHGDI 190 (318)
T ss_dssp CSEEEEECTTTC--SCT---------HHHHHHHHHHCSSSCEEECCSSCC
T ss_pred CCEEEEECcccC--CHH---------HHHHHHHHHhCCCCeEEEecccCC
Confidence 999999999887 888 677778877778899999999743
No 122
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.64 E-value=2.2e-17 Score=176.34 Aligned_cols=180 Identities=16% Similarity=0.196 Sum_probs=116.5
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCE--EEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhc
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSM--TSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRS 476 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~--vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~ 476 (644)
.+++++ +++|++ .+ |+++||++++|+. +||+||||||||||+++|+|+. ++|.++...++...++
T Consensus 16 ~l~~~~-~~~y~~---~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~~~~ 82 (427)
T 2qag_B 16 TVPLAG-HVGFDS---LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGVQLQ 82 (427)
T ss_dssp -CCCCC-CC-CC-----C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSCEEE
T ss_pred eEEEee-EEEECC---ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccceEe
Confidence 466677 788863 34 9999999999999 9999999999999999999994 4566666555555677
Q ss_pred ceEEEecCCCCC-cccHHHHHhcCCCCCCCCCHHHHHHH----HHHHhhccchhh-------hhcCcccc-------ccC
Q psy5743 477 QIGSVSQEPTLF-SGTIYENILYGVNDSSSVTKSDIIHA----AKEANAYGFVID-------FKNGFDTI-------VGE 537 (644)
Q Consensus 477 ~i~~V~Q~~~Lf-~gTIreNI~~g~~~~~~~~~~~i~~a----~~~a~l~~~i~~-------lp~Gl~T~-------ige 537 (644)
.++|++|++.++ .-|+.||+.+|.. .+.+.-++. ++. .+.+++.. ++..-|+. |-+
T Consensus 83 ~i~~v~Q~~~l~~~ltv~D~~~~g~~----~~~~~~~~~i~~~i~~-q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d 157 (427)
T 2qag_B 83 SNTYDLQESNVRLKLTIVSTVGFGDQ----INKEDSYKPIVEFIDA-QFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAP 157 (427)
T ss_dssp EEEEEEEC--CEEEEEEEEEECCCC-----CCHHHHSHHHHHHHHH-HHHHHHHHC--CCCCCCCSCC--CCEEEEEECC
T ss_pred eEEEEeecCccccccchhhhhhhhhc----cccchhhhHHHHHHHH-HHHHHHHHHHhhhhhhcccccccccEEEEEEeC
Confidence 899999999887 5699999999854 343322211 111 11111111 12222322 245
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHH-Hc-CCceEEEEccC
Q psy5743 538 RGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEK-LI-EGKTVLTIAHR 599 (644)
Q Consensus 538 ~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~-~~-~~~TvI~IaHr 599 (644)
.+..|+-.+ +.++|+|..+++|+++|++|..|.++.-..+.+.|.+ +. .+..++.|+..
T Consensus 158 ~~~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 158 TGHSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp CC---CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred CCCCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 566788776 8999999999999999999999988766677777775 43 46778888753
No 123
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.64 E-value=1.6e-16 Score=184.94 Aligned_cols=160 Identities=16% Similarity=0.150 Sum_probs=104.1
Q ss_pred ccEEEEEEEEEcC----CCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHH
Q psy5743 398 GEIDFNNIRFSYP----SRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMY 473 (644)
Q Consensus 398 ~~I~~~~vsf~Y~----~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~ 473 (644)
+.|++++..--.- +..++.|++|+||++++|++++|+||||||||||++.+.+..-..
T Consensus 639 ~~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~a------------------ 700 (918)
T 3thx_B 639 RKIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMA------------------ 700 (918)
T ss_dssp CEEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHH------------------
T ss_pred CcEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHh------------------
Confidence 3577777643220 112468999999999999999999999999999999987532110
Q ss_pred HhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHH
Q psy5743 474 LRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIA 553 (644)
Q Consensus 474 lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLA 553 (644)
..-.+||++..-+ ++.++| ..++ |..-.+..+-..+|+|++|+..++
T Consensus 701 --q~g~~vpa~~~~i--~~~d~i---------------------------~~~i--g~~d~l~~~~stfs~em~~~~~il 747 (918)
T 3thx_B 701 --QIGSYVPAEEATI--GIVDGI---------------------------FTRM--GAADNIYKGRSTFMEELTDTAEII 747 (918)
T ss_dssp --HHTCCBSSSEEEE--ECCSEE---------------------------EEEC------------CCHHHHHHHHHHHH
T ss_pred --hcCccccchhhhh--hHHHHH---------------------------HHhC--ChHHHHHHhHHHhhHHHHHHHHHH
Confidence 0011222221100 000000 0000 111112223357899999999999
Q ss_pred HHHccCCCEEEeecccCCCCHHHHHHHH-HHHHHHc--CCceEEEEccCchHHhhcCEE
Q psy5743 554 RALIKKSKILLLDEATSALDAENEYLVQ-SAIEKLI--EGKTVLTIAHRLSTIRKSNQI 609 (644)
Q Consensus 554 RAll~~p~IliLDEaTSaLD~~~e~~i~-~~l~~~~--~~~TvI~IaHrl~~i~~aD~I 609 (644)
|+ ..+|+++||||||+++|+.....+. ..++.+. .++|+|++||.++....||+.
T Consensus 748 ~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~l~~~~ 805 (918)
T 3thx_B 748 RK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKNY 805 (918)
T ss_dssp HH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHT
T ss_pred Hh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHHHHhhc
Confidence 99 8899999999999999999777776 4445442 489999999999888766653
No 124
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.63 E-value=5.8e-16 Score=158.44 Aligned_cols=151 Identities=15% Similarity=0.205 Sum_probs=102.5
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHh-cCCCC
Q psy5743 424 KIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENIL-YGVND 502 (644)
Q Consensus 424 ~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~-~g~~~ 502 (644)
.+++|+.++|+||+|||||||++.+++... .|++. .|.+... +..+.|++.+... ..+.+++. ++..
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~-~g~~~~~------~~~v~~~~~e~~~--~~~~~r~~~~g~~- 93 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDL-LEVGELP------TGPVIYLPAEDPP--TAIHHRLHALGAH- 93 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCT-TCCCCCC------CCCEEEEESSSCH--HHHHHHHHHHHTT-
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCc-CCCccCC------CccEEEEECCCCH--HHHHHHHHHHHhh-
Confidence 378999999999999999999999999764 47663 3544321 2367888776543 33433332 2321
Q ss_pred CCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccC--CCCHHHH---
Q psy5743 503 SSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATS--ALDAENE--- 577 (644)
Q Consensus 503 ~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTS--aLD~~~e--- 577 (644)
.+.++..++++...+. ...+.....||+||+|++ |+++++|+++|+||||+ ++|..+.
T Consensus 94 ---~~~~~~~~~~~~l~l~-----------~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~ 156 (279)
T 1nlf_A 94 ---LSAEERQAVADGLLIQ-----------PLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPM 156 (279)
T ss_dssp ---SCHHHHHHHHHHEEEC-----------CCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHH
T ss_pred ---cChhhhhhccCceEEe-----------ecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHH
Confidence 3444444444443332 223445678999998875 78899999999999999 9997544
Q ss_pred HHHHHHHHHHc--CCceEEEEccCchHH
Q psy5743 578 YLVQSAIEKLI--EGKTVLTIAHRLSTI 603 (644)
Q Consensus 578 ~~i~~~l~~~~--~~~TvI~IaHrl~~i 603 (644)
..+.+.|.++. .++|+|+|+|.....
T Consensus 157 ~~~~~~L~~l~~~~g~tvi~i~H~~~~~ 184 (279)
T 1nlf_A 157 AQVIGRMEAIAADTGCSIVFLHHASKGA 184 (279)
T ss_dssp HHHHHHHHHHHHHHCCEEEEEEEC----
T ss_pred HHHHHHHHHHHHHcCCEEEEEecCCCcc
Confidence 67777777764 389999999987654
No 125
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.63 E-value=4.6e-16 Score=152.73 Aligned_cols=151 Identities=21% Similarity=0.161 Sum_probs=98.3
Q ss_pred ccccceeE-EEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHH
Q psy5743 416 VILNDLSL-KIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYE 494 (644)
Q Consensus 416 ~vL~~isl-~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIre 494 (644)
+.|+++.. .+++|+.++|+||+|||||||++.+++ .+..+.++++..+ ..+...+ ++
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~--~~~~~~~------------------~~ 64 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEG--GFSPERL------------------VQ 64 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSC--CCCHHHH------------------HH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCC--CCCHHHH------------------HH
Confidence 45677665 699999999999999999999999999 4444455554422 1122222 22
Q ss_pred HHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChh--HHHHHHHHHHHccC-CCEEEeecccCC
Q psy5743 495 NILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGG--QKQRIAIARALIKK-SKILLLDEATSA 571 (644)
Q Consensus 495 NI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGG--QkQRiaLARAll~~-p~IliLDEaTSa 571 (644)
...... .+.+++. ..+ .+. .+|++ |+|+++.+|++.++ |+++|+||||+.
T Consensus 65 ~~~~~~-----~~~~~~~------------~~~------~~~----~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~ 117 (220)
T 2cvh_A 65 MAETRG-----LNPEEAL------------SRF------ILF----TPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAH 117 (220)
T ss_dssp HHHTTT-----CCHHHHH------------HHE------EEE----CCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCC
T ss_pred HHHhcC-----CChHHHh------------hcE------EEE----ecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHH
Confidence 111000 1222210 111 011 12333 47899999999986 999999999999
Q ss_pred CCHHHH--------HHHHHHHHHHcC--CceEEEEccCch-------------H-HhhcCEEEEEeCC
Q psy5743 572 LDAENE--------YLVQSAIEKLIE--GKTVLTIAHRLS-------------T-IRKSNQICVLDKG 615 (644)
Q Consensus 572 LD~~~e--------~~i~~~l~~~~~--~~TvI~IaHrl~-------------~-i~~aD~Iivl~~G 615 (644)
+|...+ ..+.+.|+++.+ +.|+|+++|... . -..||.|++|+..
T Consensus 118 l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 118 YRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp TTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred hhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 997532 334455665543 789999999865 2 3569999999864
No 126
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.60 E-value=2.7e-16 Score=181.47 Aligned_cols=165 Identities=16% Similarity=0.148 Sum_probs=108.2
Q ss_pred ccEEEEEEEEEcCCC----CCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCC-CCcEEEECCccCCCCChH
Q psy5743 398 GEIDFNNIRFSYPSR----PDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDP-QNGKILIDGVDIKELDPM 472 (644)
Q Consensus 398 ~~I~~~~vsf~Y~~~----~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p-~~G~I~idg~~i~~~~~~ 472 (644)
+.|++++.. +|-- .++.+++|+||+ ++|++++|+||||||||||+|++.|+..+ ..| ..+..
T Consensus 576 ~~i~i~~~r--HP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G------~~vpa---- 642 (800)
T 1wb9_A 576 PGIRITEGR--HPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIG------SYVPA---- 642 (800)
T ss_dssp SCEEEEEEC--CTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTT------CCBSS----
T ss_pred CCEEEEecc--ccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcC------cccch----
Confidence 357777763 2310 245789999999 99999999999999999999999997532 222 11111
Q ss_pred HHhcceEEEecCCCCCcc-cHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHH
Q psy5743 473 YLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIA 551 (644)
Q Consensus 473 ~lr~~i~~V~Q~~~Lf~g-TIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRia 551 (644)
-+..++++.| +|.. ++.||+..+ -..+|+|+++ ++
T Consensus 643 -~~~~i~~~~~---i~~~~~~~d~l~~~---------------------------------------~stf~~e~~~-~~ 678 (800)
T 1wb9_A 643 -QKVEIGPIDR---IFTRVGAADDLASG---------------------------------------RSTFMVEMTE-TA 678 (800)
T ss_dssp -SEEEECCCCE---EEEEEC--------------------------------------------------CHHHHHH-HH
T ss_pred -hcccceeHHH---HHhhCCHHHHHHhh---------------------------------------hhhhhHHHHH-HH
Confidence 1235666655 3432 344443221 1235666654 44
Q ss_pred HHHHHccCCCEEEeecccCCCCHHHHHHH-HHHHHHHc--CCceEEEEccCchHHhhcCEEEEEeCCeEEE
Q psy5743 552 IARALIKKSKILLLDEATSALDAENEYLV-QSAIEKLI--EGKTVLTIAHRLSTIRKSNQICVLDKGKIVE 619 (644)
Q Consensus 552 LARAll~~p~IliLDEaTSaLD~~~e~~i-~~~l~~~~--~~~TvI~IaHrl~~i~~aD~Iivl~~G~ive 619 (644)
.+.....+|+++||||||+++|+.....+ .+.++.+. .++|+|++||..+....||++..+++|++..
T Consensus 679 ~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~l~d~~~~v~n~~~~~ 749 (800)
T 1wb9_A 679 NILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDA 749 (800)
T ss_dssp HHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHSTTEEEEEEEE
T ss_pred HHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHHHHhhhhhceEEEEEEE
Confidence 44456899999999999888888644443 44555543 3789999999999988899887777776653
No 127
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.56 E-value=3.1e-15 Score=149.18 Aligned_cols=146 Identities=18% Similarity=0.254 Sum_probs=93.2
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhc--cCCC-----CCcEEEECCccCC-CCChHHHhcceEEEecCCCCCcccHHHH
Q psy5743 424 KIQSGSMTSVIGSSGSGKSTLAMLLLR--LYDP-----QNGKILIDGVDIK-ELDPMYLRSQIGSVSQEPTLFSGTIYEN 495 (644)
Q Consensus 424 ~i~~G~~vaIvG~SGsGKSTLl~lL~g--~~~p-----~~G~I~idg~~i~-~~~~~~lr~~i~~V~Q~~~Lf~gTIreN 495 (644)
-+++|+.++|+||+|||||||++.+++ ..+| ..|.+++++.+.- .-....+++++++.+|+ +.+|
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~-------~~~~ 92 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSD-------VLDN 92 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHH-------HHHT
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHH-------HhhC
Confidence 489999999999999999999999999 5655 6789999987631 11123345556666553 5666
Q ss_pred HhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHc--cCCCEEEeecccCCCC
Q psy5743 496 ILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALI--KKSKILLLDEATSALD 573 (644)
Q Consensus 496 I~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll--~~p~IliLDEaTSaLD 573 (644)
+.+..+ .+.++..+.++ -+++++ .+|+++++||+|+.+|
T Consensus 93 ~~~~~~----~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~lliiD~~~~~~~ 133 (243)
T 1n0w_A 93 VAYARA----FNTDHQTQLLY-----------------------------------QASAMMVESRYALLIVDSATALYR 133 (243)
T ss_dssp EEEEEC----CSHHHHHHHHH-----------------------------------HHHHHHHHSCEEEEEEETSSGGGC
T ss_pred eEEEec----CCHHHHHHHHH-----------------------------------HHHHHHhcCCceEEEEeCchHHHH
Confidence 665432 23333322211 111222 6899999999999999
Q ss_pred HH-------HH-----HHHHHHHHHHc--CCceEEEEccCchHHh--------------------hcCEEEEEeCC
Q psy5743 574 AE-------NE-----YLVQSAIEKLI--EGKTVLTIAHRLSTIR--------------------KSNQICVLDKG 615 (644)
Q Consensus 574 ~~-------~e-----~~i~~~l~~~~--~~~TvI~IaHrl~~i~--------------------~aD~Iivl~~G 615 (644)
.+ ++ ..+...|.++. .++|+|+++|-..... .||.|++|+.|
T Consensus 134 ~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 134 TDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred HHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 86 43 23444444433 2799999999655432 68999999875
No 128
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.56 E-value=2.8e-17 Score=172.45 Aligned_cols=181 Identities=13% Similarity=0.123 Sum_probs=119.6
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCCh----HHHh
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDP----MYLR 475 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~----~~lr 475 (644)
|+++|+++.|. ...+|+++|+++++|++++|+|++|||||||++.|+|++.|++|+|.+.|.|+..... ...|
T Consensus 30 ie~~~~~~~~~---~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~ 106 (337)
T 2qm8_A 30 AESRRADHRAA---VRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDK 106 (337)
T ss_dssp HTCSSHHHHHH---HHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCG
T ss_pred HeeCCcccccC---hHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHh
Confidence 44556667774 2468999999999999999999999999999999999999999999999998865432 2457
Q ss_pred cceEEEecCCCCCc----------cc---HHHHHhc---CCCC-------CCCCCHHHHHHHHH-------------HHh
Q psy5743 476 SQIGSVSQEPTLFS----------GT---IYENILY---GVND-------SSSVTKSDIIHAAK-------------EAN 519 (644)
Q Consensus 476 ~~i~~V~Q~~~Lf~----------gT---IreNI~~---g~~~-------~~~~~~~~i~~a~~-------------~a~ 519 (644)
+++++++|++.+|. || ++|.+.. +..+ .-..++..+.+.++ ...
T Consensus 107 ~~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~ 186 (337)
T 2qm8_A 107 TRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQG 186 (337)
T ss_dssp GGSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------
T ss_pred hhheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHH
Confidence 78999999999985 22 3333210 0000 00001111110000 000
Q ss_pred hccchhhhhcCcc-ccccC--CCCCCChhHHHHHHHHHHHcc------CCCEEEeecccCCCCHHHHHHHHHHHHHHc
Q psy5743 520 AYGFVIDFKNGFD-TIVGE--RGIMLSGGQKQRIAIARALIK------KSKILLLDEATSALDAENEYLVQSAIEKLI 588 (644)
Q Consensus 520 l~~~i~~lp~Gl~-T~ige--~G~~LSGGQkQRiaLARAll~------~p~IliLDEaTSaLD~~~e~~i~~~l~~~~ 588 (644)
+.+.+...|.-+- +.+ + ....+|+|++|++..|++++. +|+++. |||+|.++-..+.+.|.+..
T Consensus 187 i~~~i~~~~~ivvlNK~-Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 187 IKKGIFELADMIAVNKA-DDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHR 259 (337)
T ss_dssp CCTTHHHHCSEEEEECC-STTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHH
T ss_pred HHHHHhccccEEEEEch-hccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHH
Confidence 1111112221100 001 1 113479999999999999997 688887 99999999989988887754
No 129
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.55 E-value=2.9e-15 Score=161.86 Aligned_cols=155 Identities=17% Similarity=0.214 Sum_probs=105.5
Q ss_pred cceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCC----hHH--HhcceEEEecCCCCC-ccc
Q psy5743 419 NDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELD----PMY--LRSQIGSVSQEPTLF-SGT 491 (644)
Q Consensus 419 ~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~----~~~--lr~~i~~V~Q~~~Lf-~gT 491 (644)
+++||++++|++++|+|+||||||||++.|+|++.|++|+|.++|.|..... ... .|+.++||+|++.++ ..|
T Consensus 284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~t 363 (503)
T 2yhs_A 284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASV 363 (503)
T ss_dssp CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHH
T ss_pred CCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHH
Confidence 5789999999999999999999999999999999999999999988775432 123 377899999998765 568
Q ss_pred HHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccC-C-CEEEeeccc
Q psy5743 492 IYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKK-S-KILLLDEAT 569 (644)
Q Consensus 492 IreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~-p-~IliLDEaT 569 (644)
+++||.++... +.+-.+.+.+...++ -.++-.--+||+.++|++..+ | .+++..+||
T Consensus 364 V~e~l~~a~~~----------------~~DvVLIDTaGrl~~-----~~~lm~EL~kiv~iar~l~~~~P~evLLvLDat 422 (503)
T 2yhs_A 364 IFDAIQAAKAR----------------NIDVLIADTAGRLQN-----KSHLMEELKKIVRVMKKLDVEAPHEVMLTIDAS 422 (503)
T ss_dssp HHHHHHHHHHT----------------TCSEEEECCCCSCCC-----HHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGG
T ss_pred HHHHHHHHHhc----------------CCCEEEEeCCCccch-----hhhHHHHHHHHHHHHHHhccCCCCeeEEEecCc
Confidence 99999876311 111111111111111 011212235889999988654 5 466666688
Q ss_pred CCCCHHHHHHHHHHHHHHcCCceEEEEcc
Q psy5743 570 SALDAENEYLVQSAIEKLIEGKTVLTIAH 598 (644)
Q Consensus 570 SaLD~~~e~~i~~~l~~~~~~~TvI~IaH 598 (644)
++.|.... .+.+.+. -+.|.|++||
T Consensus 423 tGq~al~~---ak~f~~~-~~itgvIlTK 447 (503)
T 2yhs_A 423 TGQNAVSQ---AKLFHEA-VGLTGITLTK 447 (503)
T ss_dssp GTHHHHHH---HHHHHHH-TCCSEEEEEC
T ss_pred ccHHHHHH---HHHHHhh-cCCCEEEEEc
Confidence 88655432 2223222 2789999999
No 130
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.49 E-value=6.2e-14 Score=149.26 Aligned_cols=74 Identities=27% Similarity=0.322 Sum_probs=68.4
Q ss_pred CCCChhHHHHH------HHHHHHccC-CCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEE
Q psy5743 540 IMLSGGQKQRI------AIARALIKK-SKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVL 612 (644)
Q Consensus 540 ~~LSGGQkQRi------aLARAll~~-p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl 612 (644)
..|||||+||+ ++|||+..+ |++|||||||++||+++...+.+.|.++.+++++|+|||+++....||++++|
T Consensus 279 ~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~~~~~~d~~~~l 358 (371)
T 3auy_A 279 DNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRELEDVADVIINV 358 (371)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGGGGGGCSEEEEE
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHHHHhhCCEEEEE
Confidence 57999999988 668999999 99999999999999999999999998876667999999999977889999999
Q ss_pred e
Q psy5743 613 D 613 (644)
Q Consensus 613 ~ 613 (644)
+
T Consensus 359 ~ 359 (371)
T 3auy_A 359 K 359 (371)
T ss_dssp E
T ss_pred E
Confidence 7
No 131
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.48 E-value=3.2e-17 Score=157.60 Aligned_cols=169 Identities=15% Similarity=0.087 Sum_probs=107.3
Q ss_pred CCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCC-cccHHHHHhcCCCCCCCC
Q psy5743 428 GSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLF-SGTIYENILYGVNDSSSV 506 (644)
Q Consensus 428 G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf-~gTIreNI~~g~~~~~~~ 506 (644)
|+.++|+||||||||||++.|++ |.+|.++++|.++... ...++++|....+ ..|+++|+.+..
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~------ 66 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHM------VVGGYRPPWESDELLALTWKNITDLT------ 66 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTT------CCTTCCCGGGCHHHHHHHHHHHHHHH------
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhh------hccccccCccchhHHHHHHHHHHHHH------
Confidence 68899999999999999999998 6789999999765432 2457777765332 357777775320
Q ss_pred CHHHHHHHHHHHhhccchhhhhcCccccccCCCCCC--ChhHHHHHHHHH------HHccCCCEEEeecccCCCCHHHHH
Q psy5743 507 TKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIML--SGGQKQRIAIAR------ALIKKSKILLLDEATSALDAENEY 578 (644)
Q Consensus 507 ~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~L--SGGQkQRiaLAR------All~~p~IliLDEaTSaLD~~~e~ 578 (644)
.... ..+. +.+.+...+-. .. +.-..+ |+|++|++.++. +++++|+...+|+ ++|++..+
T Consensus 67 -----~~~~-~~~~-~~ild~~~~~~-~~-~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~ 134 (189)
T 2bdt_A 67 -----VNFL-LAQN-DVVLDYIAFPD-EA-EALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLE 134 (189)
T ss_dssp -----HHHH-HTTC-EEEEESCCCHH-HH-HHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGH
T ss_pred -----HHHH-hcCC-cEEEeeccCHH-HH-HHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHH
Confidence 0010 1110 11111000000 00 000124 889888988888 8888888888884 78988766
Q ss_pred HHHHHHHHHcC-CceEEEEccC-chHHh-hcCEEEEEeCCeEEEecChhHH
Q psy5743 579 LVQSAIEKLIE-GKTVLTIAHR-LSTIR-KSNQICVLDKGKIVEIGSYAHL 626 (644)
Q Consensus 579 ~i~~~l~~~~~-~~TvI~IaHr-l~~i~-~aD~Iivl~~G~ive~Gt~~eL 626 (644)
. .+.+.+... +.|+|..+|. ++.+. .||+|+ ++|+++..|+.+-|
T Consensus 135 ~-~~~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~ 182 (189)
T 2bdt_A 135 L-VEEFESKGIDERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPL 182 (189)
T ss_dssp H-HHHHHHTTCCTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC------
T ss_pred H-HHHHhhcCCCccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCch
Confidence 6 677766643 5789999999 88875 599999 99999999987655
No 132
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.48 E-value=9.3e-17 Score=172.47 Aligned_cols=131 Identities=19% Similarity=0.186 Sum_probs=92.3
Q ss_pred cccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCC----ChHHHhcceEEEe---------c
Q psy5743 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKEL----DPMYLRSQIGSVS---------Q 483 (644)
Q Consensus 417 vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~----~~~~lr~~i~~V~---------Q 483 (644)
+|+++ + .++|+.++|+||||||||||+++|+|+++|++|+|.++|.++... +...+++.+++++ |
T Consensus 158 ~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq 235 (418)
T 1p9r_A 158 NFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQ 235 (418)
T ss_dssp HHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGG
T ss_pred HHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhcc
Confidence 56666 4 379999999999999999999999999999999999999888421 1223445566644 8
Q ss_pred CCCCC--c-----ccHHHHHhcCCCCC------CCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHH
Q psy5743 484 EPTLF--S-----GTIYENILYGVNDS------SSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRI 550 (644)
Q Consensus 484 ~~~Lf--~-----gTIreNI~~g~~~~------~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRi 550 (644)
+|.++ . .|+++|+.++.... ...+..+..+.+...++.++. ...+|||||+||
T Consensus 236 ~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~~-------------~~~~LSgg~~QR- 301 (418)
T 1p9r_A 236 DPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPFL-------------ISSSLLGVLAQR- 301 (418)
T ss_dssp CCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHHH-------------HHHHEEEEEEEE-
T ss_pred CCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHHH-------------HHHHHHHHHHHH-
Confidence 88763 2 38888887642100 001223344445554443221 235799999999
Q ss_pred HHHHHHccCCCEEE
Q psy5743 551 AIARALIKKSKILL 564 (644)
Q Consensus 551 aLARAll~~p~Ili 564 (644)
||||++.+|++..
T Consensus 302 -LaraL~~~p~~~~ 314 (418)
T 1p9r_A 302 -LVRTLCPDCKEPY 314 (418)
T ss_dssp -EEEEECTTTCEEE
T ss_pred -hhhhhcCCCCccC
Confidence 9999999999976
No 133
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.47 E-value=1.9e-16 Score=174.48 Aligned_cols=177 Identities=15% Similarity=0.134 Sum_probs=121.9
Q ss_pred CccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCc--ccH
Q psy5743 415 AVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFS--GTI 492 (644)
Q Consensus 415 ~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~--gTI 492 (644)
+.+++++++.+++|+.++|+|||||||||++++|+|+++|++|.|.++|.+--.+.. +++++++.|... .. .|.
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~---~~~v~~~~r~~~-~~~~~~~ 322 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYH---ENWIAEVTRTGM-GEGEIDM 322 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCC---SSEEEEECBCCS-SSCCBCH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCC---CCeEEEEeeccc-ccCCcCH
Confidence 457899999999999999999999999999999999999999999999976322221 456788888766 33 377
Q ss_pred HHHHhcC---CCCC---CCCCHHHHHHHHHHHhh-c------------cchhh---hhcCcccccc-------CCCCCCC
Q psy5743 493 YENILYG---VNDS---SSVTKSDIIHAAKEANA-Y------------GFVID---FKNGFDTIVG-------ERGIMLS 543 (644)
Q Consensus 493 reNI~~g---~~~~---~~~~~~~i~~a~~~a~l-~------------~~i~~---lp~Gl~T~ig-------e~G~~LS 543 (644)
++++... +||. .+..++|...+++.++- | +.+.+ .|.|....+. .....+|
T Consensus 323 ~~~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s 402 (511)
T 2oap_1 323 YDLLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVR 402 (511)
T ss_dssp HHHHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEES
T ss_pred HHHHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEe
Confidence 7776432 2210 12556667666666541 1 11222 2334433222 1234579
Q ss_pred hhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC-CceEEE--EccCchHHhh-cC
Q psy5743 544 GGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE-GKTVLT--IAHRLSTIRK-SN 607 (644)
Q Consensus 544 GGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~-~~TvI~--IaHrl~~i~~-aD 607 (644)
||||||.++|.+ | |++||+++.+.+.+.|.++.+ ++|+++ +||.++.+.. |+
T Consensus 403 ~G~~~R~~~ai~-----------E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~~~g 458 (511)
T 2oap_1 403 GNTRLRRTKEVN-----------E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMADFLG 458 (511)
T ss_dssp SSCEEEEEEEEE-----------E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHHHHT
T ss_pred CCCceEEEEEEE-----------E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHHHcC
Confidence 999999877521 7 999999877766666655543 678875 8999998753 43
No 134
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.46 E-value=9.5e-14 Score=146.62 Aligned_cols=138 Identities=21% Similarity=0.271 Sum_probs=81.1
Q ss_pred EEEEECCCCCcHHHHHHHHhc-cCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCH
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLR-LYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTK 508 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g-~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~ 508 (644)
.+.|+||+|+||||+++.++| ++.|..|+|.++|.++..... -+..+++++|.+++.-.. .+....+.
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~---------~~~~~~~~ 106 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASN--RKLELNVVSSPYHLEITP---------SDMGNNDR 106 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------------CCEECSSEEEECC---------C----CCH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccccc--ccceeeeecccceEEecH---------hhcCCcch
Confidence 399999999999999999999 899999999999988764332 367899999988753210 00000122
Q ss_pred HHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHc
Q psy5743 509 SDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI 588 (644)
Q Consensus 509 ~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~ 588 (644)
+.+.+.++...-. .+++..+ .||| +..+|+++|+|||++ ||.++...+.+.+++..
T Consensus 107 ~~~~~~i~~~~~~-------~~~~~~~-----~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~ 162 (354)
T 1sxj_E 107 IVIQELLKEVAQM-------EQVDFQD-----SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS 162 (354)
T ss_dssp HHHHHHHHHHTTT-------TC----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHh-------ccccccc-----cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc
Confidence 2343433332210 1122111 5676 788999999999999 99999999999998877
Q ss_pred CCceEEEEccCchH
Q psy5743 589 EGKTVLTIAHRLST 602 (644)
Q Consensus 589 ~~~TvI~IaHrl~~ 602 (644)
++.++|++||+++.
T Consensus 163 ~~~~~Il~t~~~~~ 176 (354)
T 1sxj_E 163 KNIRLIMVCDSMSP 176 (354)
T ss_dssp TTEEEEEEESCSCS
T ss_pred CCCEEEEEeCCHHH
Confidence 78899999999764
No 135
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.45 E-value=2.6e-14 Score=148.75 Aligned_cols=166 Identities=14% Similarity=0.096 Sum_probs=109.9
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChH----HHhcc--eEEEecCCCCCc-ccHHHHH
Q psy5743 424 KIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPM----YLRSQ--IGSVSQEPTLFS-GTIYENI 496 (644)
Q Consensus 424 ~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~----~lr~~--i~~V~Q~~~Lf~-gTIreNI 496 (644)
..++|++++|+|||||||||+++.|+|++.|++|+|.++|.|+...... .|+++ +.+++|+..++. .|++||+
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 3478999999999999999999999999999999999999999877643 34454 449999988875 5899999
Q ss_pred hcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHH
Q psy5743 497 LYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAEN 576 (644)
Q Consensus 497 ~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~ 576 (644)
.++.. .+. +.+. +||. |-... -..=-.+.-.++|++..++++++||.+|. .|...
T Consensus 205 ~~~~~----------------~~~-d~vl-----iDta-G~~~~-~~~l~~eL~~i~ral~~de~llvLDa~t~-~~~~~ 259 (328)
T 3e70_C 205 QHAKA----------------RGI-DVVL-----IDTA-GRSET-NRNLMDEMKKIARVTKPNLVIFVGDALAG-NAIVE 259 (328)
T ss_dssp HHHHH----------------HTC-SEEE-----EEEC-CSCCT-TTCHHHHHHHHHHHHCCSEEEEEEEGGGT-THHHH
T ss_pred HHHHh----------------ccc-hhhH-----Hhhc-cchhH-HHHHHHHHHHHHHHhcCCCCEEEEecHHH-HHHHH
Confidence 76521 111 1110 2221 11000 00011233348999999999999996665 33322
Q ss_pred HHHHHHHHHHHcCCceEEEEccCchH---------H-hhcCEEEEEeCCeEE
Q psy5743 577 EYLVQSAIEKLIEGKTVLTIAHRLST---------I-RKSNQICVLDKGKIV 618 (644)
Q Consensus 577 e~~i~~~l~~~~~~~TvI~IaHrl~~---------i-~~aD~Iivl~~G~iv 618 (644)
. .+.+.+. .+.|.|++||--.+ + ...-.|..+..|+-+
T Consensus 260 ~---~~~~~~~-~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~v 307 (328)
T 3e70_C 260 Q---ARQFNEA-VKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQGY 307 (328)
T ss_dssp H---HHHHHHH-SCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSST
T ss_pred H---HHHHHHh-cCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCCc
Confidence 1 1222221 37899999994432 1 223578888888765
No 136
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.45 E-value=3.4e-15 Score=138.95 Aligned_cols=87 Identities=17% Similarity=0.168 Sum_probs=73.0
Q ss_pred EEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEe
Q psy5743 403 NNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVS 482 (644)
Q Consensus 403 ~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~ 482 (644)
+|++++|+ +..+++++||++++|++++|+||+|||||||+++|+|++ |++|+|.++|.++.+. ...+ .+++
T Consensus 11 ~~~~~~~g---~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~--~~~~---~~~~ 81 (158)
T 1htw_A 11 EFSMLRFG---KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEE--YNIA---GKMI 81 (158)
T ss_dssp HHHHHHHH---HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEE--EEET---TEEE
T ss_pred HHHHHHHH---HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeee--ccCC---Ccce
Confidence 45667774 346899999999999999999999999999999999999 9999999999988531 1112 2799
Q ss_pred cCCCCCcccHHHHHhc
Q psy5743 483 QEPTLFSGTIYENILY 498 (644)
Q Consensus 483 Q~~~Lf~gTIreNI~~ 498 (644)
|++.+|.-|+.||+.+
T Consensus 82 q~~~l~~ltv~e~l~~ 97 (158)
T 1htw_A 82 YHFDLYRLADPEELEF 97 (158)
T ss_dssp EEEECTTCSCTTHHHH
T ss_pred eccccccCCcHHHHHH
Confidence 9999998899999953
No 137
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.45 E-value=1.2e-13 Score=147.35 Aligned_cols=147 Identities=16% Similarity=0.251 Sum_probs=97.4
Q ss_pred EEeCCCEEEEECCCCCcHHHHHH--HHhccCCCCCc-----EEEECCccC-CCCChHHHhcceEEEecCCCCCcccHHHH
Q psy5743 424 KIQSGSMTSVIGSSGSGKSTLAM--LLLRLYDPQNG-----KILIDGVDI-KELDPMYLRSQIGSVSQEPTLFSGTIYEN 495 (644)
Q Consensus 424 ~i~~G~~vaIvG~SGsGKSTLl~--lL~g~~~p~~G-----~I~idg~~i-~~~~~~~lr~~i~~V~Q~~~Lf~gTIreN 495 (644)
-|++|++++|+||||||||||++ ++.+..+|+.| .+++++.+. .......+++++++.+| ++.+|
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~-------~vlen 246 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD-------DALNN 246 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH-------HHHHT
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH-------hHhhc
Confidence 58999999999999999999999 44577776544 899999763 22223334556666555 67788
Q ss_pred HhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHc--cCCCEEEeecccCCCC
Q psy5743 496 ILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALI--KKSKILLLDEATSALD 573 (644)
Q Consensus 496 I~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll--~~p~IliLDEaTSaLD 573 (644)
+.+..+ .+.++.. +.+.-+++++ .+|+++++||+|+.+|
T Consensus 247 i~~~~~----~~~~~~~-----------------------------------~~l~~~~~~l~~~~~~llVIDs~t~~~~ 287 (400)
T 3lda_A 247 VAYARA----YNADHQL-----------------------------------RLLDAAAQMMSESRFSLIVVDSVMALYR 287 (400)
T ss_dssp EEEEEC----CSHHHHH-----------------------------------HHHHHHHHHHHHSCEEEEEEETGGGGCC
T ss_pred EEEecc----CChHHHH-----------------------------------HHHHHHHHHHHhcCCceEEecchhhhCc
Confidence 877643 2222222 2222222222 4799999999999999
Q ss_pred HHHH------------HHHHHHHHHHc--CCceEEEEccCch-------------------H-HhhcCEEEEEeCCe
Q psy5743 574 AENE------------YLVQSAIEKLI--EGKTVLTIAHRLS-------------------T-IRKSNQICVLDKGK 616 (644)
Q Consensus 574 ~~~e------------~~i~~~l~~~~--~~~TvI~IaHrl~-------------------~-i~~aD~Iivl~~G~ 616 (644)
.+.. ..+.+.|.++. .+.|+|+|+|-.+ . -..+|.+++|+.|+
T Consensus 288 ~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 288 TDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGK 364 (400)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEECS
T ss_pred hhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEecC
Confidence 7633 45666666654 2789999999832 1 23479999998764
No 138
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.45 E-value=2.1e-15 Score=151.30 Aligned_cols=171 Identities=14% Similarity=0.150 Sum_probs=107.6
Q ss_pred CCCEEEEECCCCCcHHHHHHHHh---ccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCc-ccHHHHHhcCC--
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLL---RLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFS-GTIYENILYGV-- 500 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~---g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~-gTIreNI~~g~-- 500 (644)
++++++|+||+|||||||+++|+ |+..|+.|+|.++|.+.. ..+...+..++|++.++. .|+.+|+...-
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~ 101 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAS----TEVGEMAKQYIEKSLLVPDHVITRLMMSELEN 101 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTT----CHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcC----ChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 47999999999999999999999 999999999999887642 234556777788877655 58899986410
Q ss_pred ---C----CCCCCCHHHHHHHHHHHhhccchhh--hh-cC-ccccccCCCCCCChhHHHHHHHHHHH-ccCCCEEEee--
Q psy5743 501 ---N----DSSSVTKSDIIHAAKEANAYGFVID--FK-NG-FDTIVGERGIMLSGGQKQRIAIARAL-IKKSKILLLD-- 566 (644)
Q Consensus 501 ---~----~~~~~~~~~i~~a~~~a~l~~~i~~--lp-~G-l~T~ige~G~~LSGGQkQRiaLARAl-l~~p~IliLD-- 566 (644)
. +..+.+.++.....+.... +.+.- .| .- ++-........||| |+ ||+ +.+|++++||
T Consensus 102 ~~~~~~il~g~~~~~~~~~~l~~~~~~-~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~ 173 (246)
T 2bbw_A 102 RRGQHWLLDGFPRTLGQAEALDKICEV-DLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDV 173 (246)
T ss_dssp CTTSCEEEESCCCSHHHHHHHHTTCCC-CEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCTT
T ss_pred cCCCeEEEECCCCCHHHHHHHHhhcCC-CEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCcccccccc
Confidence 0 0001122222111110010 00000 00 00 11111233456888 66 899 9999999999
Q ss_pred --cccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEeC
Q psy5743 567 --EATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDK 614 (644)
Q Consensus 567 --EaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~~ 614 (644)
|||+++|..++..+.+.+.+..+... .-.......+++++++.
T Consensus 174 ~~EP~~~ld~~~~~~i~~~l~~~~~~~~-----~v~~~~~~~~~~~~id~ 218 (246)
T 2bbw_A 174 TGEPLVQQEDDKPEAVAARLRQYKDVAK-----PVIELYKSRGVLHQFSG 218 (246)
T ss_dssp TCCBCBCCGGGSHHHHHHHHHHHHHHHH-----HHHHHHHHTTCEEEEEC
T ss_pred cccccccCCCCcHHHHHHHHHHHHHhHH-----HHHHHHhhcCcEEEECC
Confidence 99999999999999988877643210 00122334566777764
No 139
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.42 E-value=1.1e-13 Score=144.89 Aligned_cols=123 Identities=19% Similarity=0.149 Sum_probs=82.7
Q ss_pred ccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCC-CCCcEEEEC-CccCCCCChHHHhcceEEEecCCCCCcc-cH
Q psy5743 416 VILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD-PQNGKILID-GVDIKELDPMYLRSQIGSVSQEPTLFSG-TI 492 (644)
Q Consensus 416 ~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~-p~~G~I~id-g~~i~~~~~~~lr~~i~~V~Q~~~Lf~g-TI 492 (644)
.-++++++. .+|++++|+||||||||||+|+|+|+.. |..|+|.++ |.+.. ...++.+++++|++++++. |+
T Consensus 204 ~gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~----tt~~~~i~~v~q~~~l~dtpgv 278 (358)
T 2rcn_A 204 DGLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQH----TTTAARLYHFPHGGDVIDSPGV 278 (358)
T ss_dssp BTHHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----------------CCCEEEECTTSCEEEECHHH
T ss_pred cCHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCcc----ceEEEEEEEECCCCEecCcccH
Confidence 347788775 4899999999999999999999999999 999999987 76542 2345689999999998865 89
Q ss_pred HHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHc
Q psy5743 493 YENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALI 557 (644)
Q Consensus 493 reNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll 557 (644)
+++-..+ .+.+++.+ .+.++++.+ |+.-.-...-.+|| ||+||++||++++
T Consensus 279 ~e~~l~~------l~~~e~~~-----~~~e~l~~~--gl~~f~~~~~~~lS-G~~~r~ala~gli 329 (358)
T 2rcn_A 279 REFGLWH------LEPEQITQ-----GFVEFHDYL--GHCKYRDCKHDADP-GCAIREAVENGAI 329 (358)
T ss_dssp HTCCCCC------CCHHHHHH-----TSGGGGGGT--TCSSSTTCCSSSCT-TCHHHHHHHHTSS
T ss_pred HHhhhcC------CCHHHHHH-----HHHHHHHHc--CCchhcCCCcccCC-HHHHHHHHHhcCC
Confidence 9863321 44555432 222333322 44444445567899 9999999999863
No 140
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.38 E-value=4.6e-13 Score=123.40 Aligned_cols=91 Identities=23% Similarity=0.291 Sum_probs=69.7
Q ss_pred cccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCc--EEEECCccCCCCChHHHhcceEEEecCCCCCcccHHH
Q psy5743 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNG--KILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYE 494 (644)
Q Consensus 417 vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G--~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIre 494 (644)
+|+++ +|+.++|+||+|||||||++++.+.+.+ +| .+++++.++...
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~~~------------------------- 78 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMPLT------------------------- 78 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSCCC-------------------------
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhhHH-------------------------
Confidence 46666 8999999999999999999999999987 57 666666432210
Q ss_pred HHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCH
Q psy5743 495 NILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDA 574 (644)
Q Consensus 495 NI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~ 574 (644)
+++.+|++|+||||++ +|.
T Consensus 79 ------------------------------------------------------------~~~~~~~lLilDE~~~-~~~ 97 (149)
T 2kjq_A 79 ------------------------------------------------------------DAAFEAEYLAVDQVEK-LGN 97 (149)
T ss_dssp ------------------------------------------------------------GGGGGCSEEEEESTTC-CCS
T ss_pred ------------------------------------------------------------HHHhCCCEEEEeCccc-cCh
Confidence 3467899999999998 665
Q ss_pred HHHHHHHHHHHHHcC-Cce-EEEEccC
Q psy5743 575 ENEYLVQSAIEKLIE-GKT-VLTIAHR 599 (644)
Q Consensus 575 ~~e~~i~~~l~~~~~-~~T-vI~IaHr 599 (644)
..++.+.+.+.++.. ++| +|++||+
T Consensus 98 ~~~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 98 EEQALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence 557788888876543 577 6777775
No 141
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.33 E-value=1.5e-12 Score=123.78 Aligned_cols=111 Identities=20% Similarity=0.184 Sum_probs=75.4
Q ss_pred eEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCC
Q psy5743 422 SLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVN 501 (644)
Q Consensus 422 sl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~ 501 (644)
|+++++|+.++|+||+|+|||||++.+++.+.|.+|... .++ +..+
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~------------------~~~---------~~~~------- 77 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRG------------------YFF---------DTKD------- 77 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCC------------------CEE---------EHHH-------
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeE------------------EEE---------EHHH-------
Confidence 567789999999999999999999999999987766311 010 1111
Q ss_pred CCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccC-CCCHHHHHHH
Q psy5743 502 DSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATS-ALDAENEYLV 580 (644)
Q Consensus 502 ~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTS-aLD~~~e~~i 580 (644)
+.+.+... +..+. . + -+...+.+|++|+||||++ ++|+.....+
T Consensus 78 ---------~~~~~~~~--------~~~~~--------~-------~---~~~~~~~~~~llilDE~~~~~~~~~~~~~l 122 (180)
T 3ec2_A 78 ---------LIFRLKHL--------MDEGK--------D-------T---KFLKTVLNSPVLVLDDLGSERLSDWQRELI 122 (180)
T ss_dssp ---------HHHHHHHH--------HHHTC--------C-------S---HHHHHHHTCSEEEEETCSSSCCCHHHHHHH
T ss_pred ---------HHHHHHHH--------hcCch--------H-------H---HHHHHhcCCCEEEEeCCCCCcCCHHHHHHH
Confidence 11111100 00000 0 0 1122345999999999996 8999998888
Q ss_pred HHHHHHHc-CCceEEEEccCch
Q psy5743 581 QSAIEKLI-EGKTVLTIAHRLS 601 (644)
Q Consensus 581 ~~~l~~~~-~~~TvI~IaHrl~ 601 (644)
.+.+.+.. +++++|++||...
T Consensus 123 ~~ll~~~~~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 123 SYIITYRYNNLKSTIITTNYSL 144 (180)
T ss_dssp HHHHHHHHHTTCEEEEECCCCS
T ss_pred HHHHHHHHHcCCCEEEEcCCCh
Confidence 88887765 6899999999874
No 142
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=99.33 E-value=2.4e-15 Score=149.38 Aligned_cols=184 Identities=14% Similarity=0.147 Sum_probs=82.5
Q ss_pred ccccceeEEEeCCCEEEEECCCCCcHHHHHHHHh-ccC------------CCCCcEEEECCccCCCCChHHHhcceEEEe
Q psy5743 416 VILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLL-RLY------------DPQNGKILIDGVDIKELDPMYLRSQIGSVS 482 (644)
Q Consensus 416 ~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~-g~~------------~p~~G~I~idg~~i~~~~~~~lr~~i~~V~ 482 (644)
...+++||++++|++++|+||||||||||+++|+ |++ +|..|++ +|.++...+...+... ..
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~g~~--~g~~~~~~~~~~~~~~---~~ 89 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEK--EGKDYYFVDREEFLRL---CS 89 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----CEEECCCEESSCCCTTCC--BTTTBEECCHHHHHHH---HH
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCCcccccccCCCCCCcccc--CCCeEEEecHHHhhhh---hh
Confidence 4578999999999999999999999999999999 999 6666665 5655555555544432 22
Q ss_pred cCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhh-hcCccccccCCCCCCChhHHHHH-HHHH-HHccC
Q psy5743 483 QEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDF-KNGFDTIVGERGIMLSGGQKQRI-AIAR-ALIKK 559 (644)
Q Consensus 483 Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~l-p~Gl~T~ige~G~~LSGGQkQRi-aLAR-All~~ 559 (644)
++..++.+++.+|+ ++.+ .+++.++++... ..+..+ +.|.. .-+++. .-++ .++..
T Consensus 90 ~~~~~~~~~~~~~~-~~~~------~~~i~~~~~~~~--~vild~~~~g~~------------~~~~~~~~~~~~v~v~~ 148 (231)
T 3lnc_A 90 NGEIIEHAEVFGNF-YGVP------RKNLEDNVDKGV--STLLVIDWQGAF------------KFMEMMREHVVSIFIMP 148 (231)
T ss_dssp TTCEEEEEEETTEE-EEEE------CTTHHHHHHHTC--EEEEECCHHHHH------------HHHHHSGGGEEEEEEEC
T ss_pred cCceehhhhhcccc-CCCC------HHHHHHHHHcCC--eEEEEcCHHHHH------------HHHHhcCCCeEEEEEEC
Confidence 44444444555554 4432 223333333221 111111 11111 113443 2223 33567
Q ss_pred CCEEEeecccCCCCHHHHHHHHHHHHHHcC------CceEEEEccCchH-HhhcCEEEEEeCCeEEEecChhH
Q psy5743 560 SKILLLDEATSALDAENEYLVQSAIEKLIE------GKTVLTIAHRLST-IRKSNQICVLDKGKIVEIGSYAH 625 (644)
Q Consensus 560 p~IliLDEaTSaLD~~~e~~i~~~l~~~~~------~~TvI~IaHrl~~-i~~aD~Iivl~~G~ive~Gt~~e 625 (644)
|+..++||.+++.|..++..+.+.|.+..+ ..+.|++.|.++. .+..++++...+++....++.++
T Consensus 149 ~~~~~l~~Rl~~R~~~~~~~i~~rl~~~~~~~~~~~~~d~vI~n~~~e~~~~~l~~~i~~~~~~~~~~~~~~~ 221 (231)
T 3lnc_A 149 PSMEELRRRLCGRRADDSEVVEARLKGAAFEISHCEAYDYVIVNEDIEETADRISNILRAEQMKTCRQVGLRE 221 (231)
T ss_dssp SCHHHHHHC--------------CHHHHHHHHTTGGGSSEEEECSSHHHHHHHHHHHHHHHHTBGGGEESHHH
T ss_pred CcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhhcCCeEEEECcCHHHHHHHHHHHHHHHhhccccCcchhh
Confidence 788889999999999888888777654332 2355555665543 24444444444444433333333
No 143
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.32 E-value=2.5e-14 Score=148.27 Aligned_cols=91 Identities=20% Similarity=0.256 Sum_probs=75.9
Q ss_pred ccEEEEEEEEEcCCCCCCccccceeEEE-------------------eCCCEEEEECCCCCcHHHHHHHHhccCC--CCC
Q psy5743 398 GEIDFNNIRFSYPSRPDAVILNDLSLKI-------------------QSGSMTSVIGSSGSGKSTLAMLLLRLYD--PQN 456 (644)
Q Consensus 398 ~~I~~~~vsf~Y~~~~~~~vL~~isl~i-------------------~~G~~vaIvG~SGsGKSTLl~lL~g~~~--p~~ 456 (644)
+.|+++||++.|. ++++++|+++ ++|+++||+|+||||||||+++|.|++. |++
T Consensus 36 ~~i~~~~v~~~y~-----~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~ 110 (308)
T 1sq5_A 36 EDLSLEEVAEIYL-----PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEH 110 (308)
T ss_dssp TTCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTC
T ss_pred cccchHhHHHHHH-----HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCC
Confidence 4699999999993 5899999988 8999999999999999999999999998 999
Q ss_pred cEEEE---CCccCCCCChHHHhcceEEEecCCCCC-cccHHHHHhc
Q psy5743 457 GKILI---DGVDIKELDPMYLRSQIGSVSQEPTLF-SGTIYENILY 498 (644)
Q Consensus 457 G~I~i---dg~~i~~~~~~~lr~~i~~V~Q~~~Lf-~gTIreNI~~ 498 (644)
|+|.+ ||.+.. ...++.++++ |+..++ .-|+.+|+.+
T Consensus 111 G~i~vi~~d~~~~~----~~~~~~~~~v-q~~~~~~~~~~~~~~~~ 151 (308)
T 1sq5_A 111 RRVELITTDGFLHP----NQVLKERGLM-KKKGFPESYDMHRLVKF 151 (308)
T ss_dssp CCEEEEEGGGGBCC----HHHHHHHTCT-TCTTSGGGBCHHHHHHH
T ss_pred CeEEEEecCCccCc----HHHHHhCCEe-ecCCCCCCccHHHHHHH
Confidence 99999 998742 2456778999 765543 3467777654
No 144
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=99.31 E-value=3.9e-14 Score=139.84 Aligned_cols=129 Identities=18% Similarity=0.213 Sum_probs=107.4
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhccC---CCCCcEEEE--------CCccCCC-CChHHHhcceEEEecCC------CCC
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRLY---DPQNGKILI--------DGVDIKE-LDPMYLRSQIGSVSQEP------TLF 488 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~~---~p~~G~I~i--------dg~~i~~-~~~~~lr~~i~~V~Q~~------~Lf 488 (644)
.+.+++|+|++||||||++++|.+.+ .++.|++.. +|.++.+ ....++++++++++|++ .++
T Consensus 4 ~~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 83 (227)
T 1cke_A 4 IAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILE 83 (227)
T ss_dssp CSCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEET
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEEC
Confidence 35789999999999999999999877 788999988 7887763 55678899999999986 556
Q ss_pred cccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccc-cCCCCCCChhHHHHHHHHHHHccCCCEEEeec
Q psy5743 489 SGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIV-GERGIMLSGGQKQRIAIARALIKKSKILLLDE 567 (644)
Q Consensus 489 ~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~i-ge~G~~LSGGQkQRiaLARAll~~p~IliLDE 567 (644)
..++.+++ .++++.+++..++.++++...+.+.++.+ .++|.-++|+ .++++++++++++|+.+
T Consensus 84 ~~~v~~~~----------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~-----~~~~~~~~~~d~~i~l~ 148 (227)
T 1cke_A 84 GEDVSGEI----------RTQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGR-----DMGTVVFPDAPVKIFLD 148 (227)
T ss_dssp TEECHHHH----------TSHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEES-----SCCCCCCTTCSEEEEEE
T ss_pred CeeCchhh----------CCHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECC-----CccceEecCCCEEEEEe
Confidence 77788876 25788999999999999998887877766 3577888887 57778899999999988
Q ss_pred ccC
Q psy5743 568 ATS 570 (644)
Q Consensus 568 aTS 570 (644)
++.
T Consensus 149 ~~~ 151 (227)
T 1cke_A 149 ASS 151 (227)
T ss_dssp CCH
T ss_pred CCH
Confidence 754
No 145
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.31 E-value=8.5e-15 Score=149.19 Aligned_cols=144 Identities=14% Similarity=0.135 Sum_probs=104.7
Q ss_pred CccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCC-CCCc-ccH
Q psy5743 415 AVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEP-TLFS-GTI 492 (644)
Q Consensus 415 ~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~-~Lf~-gTI 492 (644)
+.+++++++++++| ++|+||+|||||||+++|+|.+.+ |.|.++|.++........++.+++++|++ ..+. -++
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~ 108 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIF 108 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEe
Confidence 45789999999999 999999999999999999999987 89999999998777777788899999985 3332 356
Q ss_pred HHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccC--
Q psy5743 493 YENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATS-- 570 (644)
Q Consensus 493 reNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTS-- 570 (644)
.|||....+. ....+. ....+....+ -..|||||+||..+|+|+..+|++| |||+.
T Consensus 109 ~Deid~~~~~---r~~~~~------~~~~~~~~~~-----------l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~ 166 (274)
T 2x8a_A 109 FDEVDALCPR---RSDRET------GASVRVVNQL-----------LTEMDGLEARQQVFIMAATNRPDII--DPAILRP 166 (274)
T ss_dssp EETCTTTCC------------------CTTHHHHH-----------HHHHHTCCSTTCEEEEEEESCGGGS--CHHHHST
T ss_pred eehhhhhhcc---cCCCcc------hHHHHHHHHH-----------HHhhhcccccCCEEEEeecCChhhC--CHhhcCc
Confidence 6777654321 011100 0011111121 2358999999999999999999985 99975
Q ss_pred ----------CCCHHHHHHHHHHH
Q psy5743 571 ----------ALDAENEYLVQSAI 584 (644)
Q Consensus 571 ----------aLD~~~e~~i~~~l 584 (644)
--|.+....|.+.+
T Consensus 167 gRfd~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 167 GRLDKTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp TSSCEEEECCSCCHHHHHHHHHHH
T ss_pred ccCCeEEEeCCcCHHHHHHHHHHH
Confidence 23666777776654
No 146
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.30 E-value=2.1e-13 Score=140.76 Aligned_cols=118 Identities=13% Similarity=0.080 Sum_probs=81.8
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEE---CCccCCCCChHHHhcceEEEecCCCCC------cccHHH
Q psy5743 424 KIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILI---DGVDIKELDPMYLRSQIGSVSQEPTLF------SGTIYE 494 (644)
Q Consensus 424 ~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i---dg~~i~~~~~~~lr~~i~~V~Q~~~Lf------~gTIre 494 (644)
++.+|++++++||||||||||+|+|+ +.+|++|+|.+ +|.++........++.+|+|+|+|.+. .-|+ |
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~-e 238 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP-R 238 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-G
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-H
Confidence 45679999999999999999999999 99999999999 999887654221123699999999653 4578 8
Q ss_pred HH--hcCC--------CC--CCCCCHHHHHHHHHHHhhcc-chhhhhcCccccccCCCCCCChhHHHHHHHHH
Q psy5743 495 NI--LYGV--------ND--SSSVTKSDIIHAAKEANAYG-FVIDFKNGFDTIVGERGIMLSGGQKQRIAIAR 554 (644)
Q Consensus 495 NI--~~g~--------~~--~~~~~~~~i~~a~~~a~l~~-~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLAR 554 (644)
|+ .|+. .+ ......+.+.++++..++.+ ...+.| ..|||.+++++.|||
T Consensus 239 ~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~-----------~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 239 EVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYL-----------KIIKVYLEEIKELCR 300 (302)
T ss_dssp GGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHH-----------HHTTCCCTTHHHHSS
T ss_pred HHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHH-----------HHHHHHHHHHHHHhc
Confidence 98 5531 00 01123467888888888764 333333 358998888899987
No 147
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.23 E-value=1.7e-12 Score=139.07 Aligned_cols=156 Identities=18% Similarity=0.171 Sum_probs=95.9
Q ss_pred ccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHh
Q psy5743 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENIL 497 (644)
Q Consensus 418 L~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~ 497 (644)
-++++|++++|+.|+|||++|||||||++.|+|..+ .+.+.+...+. ..+++|.|++. ..-++.|+..
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~------~i~~~~ftTl~-----p~~G~V~~~~~-~~~~l~DtpG 214 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP------KIAPYPFTTLS-----PNLGVVEVSEE-ERFTLADIPG 214 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC------EECCCTTCSSC-----CEEEEEECSSS-CEEEEEECCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc------cccCcccceec-----ceeeEEEecCc-ceEEEEeccc
Confidence 479999999999999999999999999999999853 45565555443 36777877651 1223333332
Q ss_pred cCCC--CCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHH
Q psy5743 498 YGVN--DSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAE 575 (644)
Q Consensus 498 ~g~~--~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~ 575 (644)
+... ........ ..+..+ ..+..+.-+.-. + +.-.+||+||+||.++||+|..+|.|+++ +.+|..
T Consensus 215 li~~a~~~~~L~~~-fl~~~e--ra~~lL~vvDls-~----~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~ 282 (416)
T 1udx_A 215 IIEGASEGKGLGLE-FLRHIA--RTRVLLYVLDAA-D----EPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLL 282 (416)
T ss_dssp CCCCGGGSCCSCHH-HHHHHT--SSSEEEEEEETT-S----CHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTS
T ss_pred cccchhhhhhhhHH-HHHHHH--HHHhhhEEeCCc-c----CCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChh
Confidence 2110 00001111 111111 111112111111 1 22246999999999999999999999999 889987
Q ss_pred HHHHHHHHHHHHc--CCceEEEEcc
Q psy5743 576 NEYLVQSAIEKLI--EGKTVLTIAH 598 (644)
Q Consensus 576 ~e~~i~~~l~~~~--~~~TvI~IaH 598 (644)
++ ...+.+.+.. .+.+++.||.
T Consensus 283 ~~-~~~~~l~~~l~~~g~~vi~iSA 306 (416)
T 1udx_A 283 EE-EAVKALADALAREGLAVLPVSA 306 (416)
T ss_dssp CH-HHHHHHHHHHHTTTSCEEECCT
T ss_pred hH-HHHHHHHHHHHhcCCeEEEEEC
Confidence 65 3334443332 2567777763
No 148
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.20 E-value=2.4e-12 Score=132.89 Aligned_cols=106 Identities=13% Similarity=0.136 Sum_probs=71.3
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEE---CCccCCCCChHHHhcceEEEecCCCC------------
Q psy5743 423 LKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILI---DGVDIKELDPMYLRSQIGSVSQEPTL------------ 487 (644)
Q Consensus 423 l~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i---dg~~i~~~~~~~lr~~i~~V~Q~~~L------------ 487 (644)
|++.+|++++|+||||||||||+++|+|+..|++|+|.+ +|.++.........+.+++|+|+|.+
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 456789999999999999999999999999999999999 99998765532222469999999853
Q ss_pred ----Cc-ccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhc-cchhhhhc
Q psy5743 488 ----FS-GTIYENILYGVNDSSSVTKSDIIHAAKEANAY-GFVIDFKN 529 (644)
Q Consensus 488 ----f~-gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~-~~i~~lp~ 529 (644)
|. -|+ +|+.|+.-......++++.++++..++. +...+.|.
T Consensus 244 ~~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~ 290 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYVK 290 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHH
T ss_pred HHHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHHH
Confidence 43 377 9998853111123456789999999995 55555553
No 149
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.20 E-value=1.4e-11 Score=126.54 Aligned_cols=142 Identities=16% Similarity=0.126 Sum_probs=100.8
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
+.++++++.|++. . ++++|+ +|++++++|++||||||++..|++.+.+..|+|.+.+.|.+.-...+
T Consensus 77 ~~~~~l~~~~~~~---~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~------ 143 (295)
T 1ls1_A 77 TVYEALKEALGGE---A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAARE------ 143 (295)
T ss_dssp HHHHHHHHHTTSS---C--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHH------
T ss_pred HHHHHHHHHHCCC---C--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHH------
Confidence 5667788888532 1 678888 99999999999999999999999999999999999987765311100
Q ss_pred EEecCCCCCcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccC
Q psy5743 480 SVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKK 559 (644)
Q Consensus 480 ~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~ 559 (644)
++....+..++. -+|.| ..-...+-||.+|+++...+
T Consensus 144 ------------------------------ql~~~~~~~~l~----~~~~~---------~~~~p~~l~~~~l~~~~~~~ 180 (295)
T 1ls1_A 144 ------------------------------QLRLLGEKVGVP----VLEVM---------DGESPESIRRRVEEKARLEA 180 (295)
T ss_dssp ------------------------------HHHHHHHHHTCC----EEECC---------TTCCHHHHHHHHHHHHHHHT
T ss_pred ------------------------------HHHHhcccCCeE----EEEcC---------CCCCHHHHHHHHHHHHHhCC
Confidence 000111222221 11111 11234456899999998899
Q ss_pred CCEEEeecc-cCCCCHHHHHHHHHHHHHHcCCceEEEEc
Q psy5743 560 SKILLLDEA-TSALDAENEYLVQSAIEKLIEGKTVLTIA 597 (644)
Q Consensus 560 p~IliLDEa-TSaLD~~~e~~i~~~l~~~~~~~TvI~Ia 597 (644)
++++|+||| ++++|...-..+.+..+...++.+++++.
T Consensus 181 ~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~ 219 (295)
T 1ls1_A 181 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLD 219 (295)
T ss_dssp CCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEE
T ss_pred CCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEe
Confidence 999999999 99999987777777766666666665553
No 150
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.18 E-value=1.1e-11 Score=119.92 Aligned_cols=71 Identities=15% Similarity=0.131 Sum_probs=56.5
Q ss_pred eEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcc-cHHHHH
Q psy5743 422 SLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSG-TIYENI 496 (644)
Q Consensus 422 sl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~g-TIreNI 496 (644)
|+++++|++++|+||||||||||+++|+|+++ .+.+++.++........+..++|++|++..|.. +..+|+
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAF 72 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcE
Confidence 57789999999999999999999999999974 688899888777666667889999999987765 344444
No 151
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=99.18 E-value=1.8e-12 Score=130.32 Aligned_cols=104 Identities=22% Similarity=0.165 Sum_probs=86.7
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHh---ccCCCCCcEEE--------ECCccC-CCCChHHHhcceEEEecC------CCC
Q psy5743 426 QSGSMTSVIGSSGSGKSTLAMLLL---RLYDPQNGKIL--------IDGVDI-KELDPMYLRSQIGSVSQE------PTL 487 (644)
Q Consensus 426 ~~G~~vaIvG~SGsGKSTLl~lL~---g~~~p~~G~I~--------idg~~i-~~~~~~~lr~~i~~V~Q~------~~L 487 (644)
++|++++|+|||||||||++++|. |++.|++|.|+ .+|.++ .......+++.+++++|+ .++
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 104 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQNGQLQVIL 104 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEETTEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecCCCCceEEE
Confidence 789999999999999999999999 99999999999 999999 456788999999999954 567
Q ss_pred CcccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCC
Q psy5743 488 FSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERG 539 (644)
Q Consensus 488 f~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G 539 (644)
++.++.+||. .+++..++..+..++.+.+....+...++++|
T Consensus 105 ~~~~v~~~i~----------~~~v~~~~s~~~~~~~vr~~l~~~~~~~a~~~ 146 (252)
T 4e22_A 105 EGEDVSNEIR----------TETVGNTASQAAAFPRVREALLRRQRAFREAP 146 (252)
T ss_dssp TTEECTTGGG----------SHHHHHHHHHHTTSHHHHHHHHHHHHTTCCSS
T ss_pred CCeehhHHHH----------HHHHHHHHHHhcccHHHHHHHHHHHHHHhhCC
Confidence 7788888874 35677777788888888777666666666544
No 152
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.14 E-value=7.6e-11 Score=121.38 Aligned_cols=98 Identities=17% Similarity=0.307 Sum_probs=73.1
Q ss_pred eeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCC
Q psy5743 421 LSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGV 500 (644)
Q Consensus 421 isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~ 500 (644)
++++.++|++++|+|++||||||+++.|++.+.+..|+|.+.+.|.... ...
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~---------------------~a~------- 148 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRA---------------------AAI------- 148 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCH---------------------HHH-------
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccH---------------------HHH-------
Confidence 3555678999999999999999999999999999989999887664210 011
Q ss_pred CCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHH---HHHHHHccCCCEEEeecccC
Q psy5743 501 NDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRI---AIARALIKKSKILLLDEATS 570 (644)
Q Consensus 501 ~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRi---aLARAll~~p~IliLDEaTS 570 (644)
+++...++..++ +. + ...|||+.|++ +++||+.++|+++|+|||..
T Consensus 149 --------eqL~~~~~~~gl-----------~~-~----~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 149 --------EQLKIWGERVGA-----------TV-I----SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp --------HHHHHHHHHHTC-----------EE-E----CCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred --------HHHHHHHHHcCC-----------cE-E----ecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 222223333332 11 1 13579999999 99999999999999999985
No 153
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=99.12 E-value=6.7e-11 Score=121.49 Aligned_cols=138 Identities=12% Similarity=0.128 Sum_probs=92.0
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCC
Q psy5743 426 QSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSS 505 (644)
Q Consensus 426 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~ 505 (644)
++|++++++|++||||||++..|++.+.|.+| +++.++.+|++ ..+..|++.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G------------------~~V~lv~~D~~--r~~a~eqL~-------- 154 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH------------------KKIAFITTDTY--RIAAVEQLK-------- 154 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC------------------CCEEEEECCCS--STTHHHHHH--------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC------------------CEEEEEecCcc--cchHHHHHH--------
Confidence 47999999999999999999999999998778 25777777773 333333332
Q ss_pred CCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHH
Q psy5743 506 VTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIE 585 (644)
Q Consensus 506 ~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~ 585 (644)
..++..++ | .... ..++..+.+++++ ++|+++|+| |+++|...+..+.+...
T Consensus 155 -------~~~~~~gl-------~----~~~~------~~~~~l~~al~~~--~~~dlvIiD--T~G~~~~~~~~~~el~~ 206 (296)
T 2px0_A 155 -------TYAELLQA-------P----LEVC------YTKEEFQQAKELF--SEYDHVFVD--TAGRNFKDPQYIDELKE 206 (296)
T ss_dssp -------HHHTTTTC-------C----CCBC------SSHHHHHHHHHHG--GGSSEEEEE--CCCCCTTSHHHHHHHHH
T ss_pred -------HHHHhcCC-------C----eEec------CCHHHHHHHHHHh--cCCCEEEEe--CCCCChhhHHHHHHHHH
Confidence 12221121 1 1111 1234567788875 999999999 99999877665554332
Q ss_pred HHc---CCceEEEE--ccCchHHhh-cCEEEEEeCCeEEE
Q psy5743 586 KLI---EGKTVLTI--AHRLSTIRK-SNQICVLDKGKIVE 619 (644)
Q Consensus 586 ~~~---~~~TvI~I--aHrl~~i~~-aD~Iivl~~G~ive 619 (644)
-.. .+.+++++ +|....+.. +|++..++.|.++-
T Consensus 207 ~l~~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVl 246 (296)
T 2px0_A 207 TIPFESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIF 246 (296)
T ss_dssp HSCCCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEE
T ss_pred HHhhcCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 221 23456666 899776654 77776677777775
No 154
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=99.09 E-value=1.7e-11 Score=117.19 Aligned_cols=128 Identities=20% Similarity=0.320 Sum_probs=68.6
Q ss_pred CCEEEEECCCCCcHHHHHHHHhccCC-------------CCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHH
Q psy5743 428 GSMTSVIGSSGSGKSTLAMLLLRLYD-------------PQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYE 494 (644)
Q Consensus 428 G~~vaIvG~SGsGKSTLl~lL~g~~~-------------p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIre 494 (644)
|+.++|+||||||||||+++|+|+++ |..|++ +|.++...+.+.+++.+ .|+.+++..++..
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~ge~--~g~~~~~~~~~~~~~~~---~~~~~~e~~~~~~ 75 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV--NGKDYNFVSVDEFKSMI---KNNEFIEWAQFSG 75 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEECCCEEECSCCCTTCC--BTTTBEECCHHHHHHHH---HTTCEEEEEEETT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccceEEeeccccCCCCCcc--CCeeeeecCHHHHHHHH---hhcceeeEEEEec
Confidence 67899999999999999999999998 889986 99998888888777654 3677777777777
Q ss_pred HHhcCCCCCCCCCHHHHHHHHHHH----------hh---cc---------chhh-hhcCccccccCCCCCCChhHHHHHH
Q psy5743 495 NILYGVNDSSSVTKSDIIHAAKEA----------NA---YG---------FVID-FKNGFDTIVGERGIMLSGGQKQRIA 551 (644)
Q Consensus 495 NI~~g~~~~~~~~~~~i~~a~~~a----------~l---~~---------~i~~-lp~Gl~T~ige~G~~LSGGQkQRia 551 (644)
|+ +|.+ .+++.++++.. ++ .+ ||.. -++-+...+-++|..-....+||++
T Consensus 76 ~~-yg~~------~~~i~~~l~~g~~~il~~~~~g~~~l~~~~~~~~~~i~i~~p~~~~l~~Rl~~Rg~~~~~~i~~rl~ 148 (186)
T 3a00_A 76 NY-YGST------VASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIAPPSVEDLKKRLEGRGTETEESINKRLS 148 (186)
T ss_dssp EE-EEEE------HHHHHHHHHTTCEEEEECCHHHHHHHHTCGGGCCEEEEEECSCC-----------------------
T ss_pred ee-ccCc------HHHHHHHHHcCCeEEEEEcHHHHHHHHHhcCCCeEEEEEECcCHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 76 6632 34444444321 11 01 0100 1245666677888887788899999
Q ss_pred HHHHHc-----cCCCEEEeec
Q psy5743 552 IARALI-----KKSKILLLDE 567 (644)
Q Consensus 552 LARAll-----~~p~IliLDE 567 (644)
-|+.-+ +.++.+|..+
T Consensus 149 ~~~~~~~~~~~~~~d~vi~nd 169 (186)
T 3a00_A 149 AAQAELAYAETGAHDKVIVND 169 (186)
T ss_dssp ----------CCCCSEEEECS
T ss_pred HHHHHHHhhcccCCcEEEECc
Confidence 999865 5678877665
No 155
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=99.09 E-value=2.3e-11 Score=131.98 Aligned_cols=65 Identities=14% Similarity=0.130 Sum_probs=56.2
Q ss_pred EEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCCh
Q psy5743 401 DFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDP 471 (644)
Q Consensus 401 ~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~ 471 (644)
.+.+++... ..+|+|+||+|++ ++++|+||||||||||+++|+|+++|++|+|.++|.++...+.
T Consensus 8 ~l~~l~~~~-----~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~ 72 (483)
T 3euj_A 8 KFRSLTLIN-----WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAGSTS 72 (483)
T ss_dssp EEEEEEEEE-----ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCSCCC
T ss_pred ceeEEEEec-----cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcccCch
Confidence 455555432 2369999999999 9999999999999999999999999999999999999976554
No 156
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=99.08 E-value=2.1e-11 Score=116.95 Aligned_cols=83 Identities=24% Similarity=0.338 Sum_probs=69.2
Q ss_pred eEEEeCCCEEEEECCCCCcHHHHHHHHhccCC-------------CCCcEEEECCccCCCCChHHHhcceEEEecCCCCC
Q psy5743 422 SLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD-------------PQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLF 488 (644)
Q Consensus 422 sl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~-------------p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf 488 (644)
|+..-+|+.++|+||||||||||++.|++.++ |..|+ +||++..-++.+.+++.+ .|+.+++
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f~~~i---~~~~fle 87 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEMTRNI---SANEFLE 87 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHHHHHH---HTTCEEE
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHhhhhh---hhhhhhh
Confidence 34455899999999999999999999999987 78888 799999999999999876 7999999
Q ss_pred cccHHHHHhcCCCCCCCCCHHHHHHHHH
Q psy5743 489 SGTIYENILYGVNDSSSVTKSDIIHAAK 516 (644)
Q Consensus 489 ~gTIreNI~~g~~~~~~~~~~~i~~a~~ 516 (644)
.+++.+| .||.+ .+.+.++++
T Consensus 88 ~~~~~~n-~YGt~------~~~v~~~l~ 108 (197)
T 3ney_A 88 FGSYQGN-MFGTK------FETVHQIHK 108 (197)
T ss_dssp EEEETTE-EEEEE------HHHHHHHHH
T ss_pred hhhhhce-ecccc------hhhHHHHHh
Confidence 9999999 48854 455555544
No 157
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.00 E-value=8.2e-13 Score=138.52 Aligned_cols=94 Identities=17% Similarity=0.226 Sum_probs=71.9
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCC-------CEEEEECCCCCcHHHHHHHHhccC----CCCCcEEEECCccCCC
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSG-------SMTSVIGSSGSGKSTLAMLLLRLY----DPQNGKILIDGVDIKE 468 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G-------~~vaIvG~SGsGKSTLl~lL~g~~----~p~~G~I~idg~~i~~ 468 (644)
++.++++..|. .+.+++++++.+++| +.++|+||+|+|||||+++++|.+ .|++|.+..++.++..
T Consensus 19 lr~~~l~~~~g---~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~ 95 (334)
T 1in4_A 19 LRPKSLDEFIG---QENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAA 95 (334)
T ss_dssp TSCSSGGGCCS---CHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHH
T ss_pred cCCccHHHccC---cHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHH
Confidence 34445555564 246899999999887 899999999999999999999998 7788888877776643
Q ss_pred CChHHHhcceEEEecCCCCCcccHHHHHh
Q psy5743 469 LDPMYLRSQIGSVSQEPTLFSGTIYENIL 497 (644)
Q Consensus 469 ~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~ 497 (644)
+-....+..|.++.|.+.++. ++.|++.
T Consensus 96 ~~~~~~~~~v~~iDE~~~l~~-~~~e~L~ 123 (334)
T 1in4_A 96 ILTSLERGDVLFIDEIHRLNK-AVEELLY 123 (334)
T ss_dssp HHHHCCTTCEEEEETGGGCCH-HHHHHHH
T ss_pred HHHHccCCCEEEEcchhhcCH-HHHHHHH
Confidence 211112457999999888776 8888875
No 158
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.00 E-value=1.2e-12 Score=133.60 Aligned_cols=141 Identities=16% Similarity=0.175 Sum_probs=98.6
Q ss_pred EEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEE
Q psy5743 401 DFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGS 480 (644)
Q Consensus 401 ~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~ 480 (644)
+++++...|. .+.+++++++++++| ++|+||+|||||||+++|.+... .|.|.++|.++........++.+++
T Consensus 51 ~l~~l~~~~~---~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~ 123 (278)
T 1iy2_A 51 ELKEIVEFLK---NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRD 123 (278)
T ss_dssp HHHHHHHHHH---CHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHH
T ss_pred HHHHHHHHHH---CHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHH
Confidence 4556666663 246899999999999 99999999999999999999986 7999999988766555566677888
Q ss_pred EecCCC-CC-cccHHHHH-hcCCCCCCC--CCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHH
Q psy5743 481 VSQEPT-LF-SGTIYENI-LYGVNDSSS--VTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARA 555 (644)
Q Consensus 481 V~Q~~~-Lf-~gTIreNI-~~g~~~~~~--~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARA 555 (644)
++|++. .+ .-++.||| .++...... ...++..+.+ ..+. ..|||||+||..+|+|
T Consensus 124 ~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~---------~~ll-----------~~lsgg~~~~~~i~~a 183 (278)
T 1iy2_A 124 LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTL---------NQLL-----------VEMDGFEKDTAIVVMA 183 (278)
T ss_dssp HHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHH---------HHHH-----------HHHTTCCTTCCEEEEE
T ss_pred HHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHH---------HHHH-----------HHHhCCCCCCCEEEEE
Confidence 888754 33 34566777 343211000 0111221111 1111 1378999999999999
Q ss_pred HccCCCEEEeecccC
Q psy5743 556 LIKKSKILLLDEATS 570 (644)
Q Consensus 556 ll~~p~IliLDEaTS 570 (644)
+..+|++ ||++.-
T Consensus 184 ~t~~p~~--ld~~l~ 196 (278)
T 1iy2_A 184 ATNRPDI--LDPALL 196 (278)
T ss_dssp EESCTTS--SCHHHH
T ss_pred ecCCchh--CCHhHc
Confidence 9999987 787753
No 159
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.97 E-value=3.9e-11 Score=131.13 Aligned_cols=161 Identities=16% Similarity=0.154 Sum_probs=96.3
Q ss_pred ceeEEEeCCCEEEEECCCCCcHHHHHHHHhc--cCCCCCcEEEECCccCCCCChHHHhc--ce-EEEecCCCCCcccHHH
Q psy5743 420 DLSLKIQSGSMTSVIGSSGSGKSTLAMLLLR--LYDPQNGKILIDGVDIKELDPMYLRS--QI-GSVSQEPTLFSGTIYE 494 (644)
Q Consensus 420 ~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g--~~~p~~G~I~idg~~i~~~~~~~lr~--~i-~~V~Q~~~Lf~gTIre 494 (644)
.+++++.+|..++|+|+|||||||+++.|.. ++.++.|++.+.+.|.+......+.. ++ +.|-+|+. -..+
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~~lPhl~~~Vvtd~~----~a~~ 234 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEGIPHLLTEVVTDMK----DAAN 234 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGTTCTTBSSSCBCSHH----HHHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhccCCcccceeecCHH----HHHH
Confidence 4788899999999999999999999999887 67777799988888877655444432 11 11111110 0111
Q ss_pred HHhcCCCCCCCCCHHHHH---HHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHH----------HHHHHHccCCC
Q psy5743 495 NILYGVNDSSSVTKSDII---HAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRI----------AIARALIKKSK 561 (644)
Q Consensus 495 NI~~g~~~~~~~~~~~i~---~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRi----------aLARAll~~p~ 561 (644)
++..- .+|+. +.++..++.++ . +|+..+. ..+||||+||. ++||++-..|.
T Consensus 235 ~L~~~--------~~EmerR~~ll~~~Gv~~i-~----~yn~~~~---~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ 298 (512)
T 2ius_A 235 ALRWC--------VNEMERRYKLMSALGVRNL-A----GYNEKIA---EADRMMRPIPDPYWKPGDSMDAQHPVLKKEPY 298 (512)
T ss_dssp HHHHH--------HHHHHHHHHHHHHTTCSSH-H----HHHHHHH---HHHHTTCCCBCTTC---------CCBCCCCCE
T ss_pred HHHHH--------HHHHHHHHHHHHHcCCccH-H----HHHHHHH---HHhhcCCcccccccccccchhccccccccCCc
Confidence 22110 11121 12222222111 1 1221111 23688888753 46777888898
Q ss_pred -EEEeecccCCCCHHHHHHHHHHHHH---HcC--CceEEEEccCch
Q psy5743 562 -ILLLDEATSALDAENEYLVQSAIEK---LIE--GKTVLTIAHRLS 601 (644)
Q Consensus 562 -IliLDEaTSaLD~~~e~~i~~~l~~---~~~--~~TvI~IaHrl~ 601 (644)
++++||+++.+|... ..+.+.|.+ ..+ +.++|++|||++
T Consensus 299 ivlvIDE~~~ll~~~~-~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 299 IVVLVDEFADLMMTVG-KKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp EEEEEETHHHHHHHHH-HHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred EEEEEeCHHHHHhhhh-HHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 788999999988432 234444432 222 779999999998
No 160
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.96 E-value=9e-11 Score=120.53 Aligned_cols=98 Identities=17% Similarity=0.130 Sum_probs=58.3
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEE---CCccCCCCChHHHhcceEEEecCCCCCc-----ccHHH
Q psy5743 423 LKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILI---DGVDIKELDPMYLRSQIGSVSQEPTLFS-----GTIYE 494 (644)
Q Consensus 423 l~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i---dg~~i~~~~~~~lr~~i~~V~Q~~~Lf~-----gTIre 494 (644)
+++.+|++++|+|+||+|||||+|.|+|+..|..|+|.+ +|+++.... ..++..+++|+|+|-++. -|+ |
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~-~~~~~~~g~v~dtpg~~~~~l~~lt~-e 245 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV-ELIHTSGGLVADTPGFSSLEFTDIEE-E 245 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC-CEEEETTEEEESSCSCSSCCCTTCCH-H
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH-HHhhcCCEEEecCCCccccccccCCH-H
Confidence 567799999999999999999999999999999999999 888876543 222223899999998765 477 9
Q ss_pred HHh--cC-----------CC-CCCCCCHHHHHHHHHHHhhcc
Q psy5743 495 NIL--YG-----------VN-DSSSVTKSDIIHAAKEANAYG 522 (644)
Q Consensus 495 NI~--~g-----------~~-~~~~~~~~~i~~a~~~a~l~~ 522 (644)
|+. |. .. .........+.++++..++.+
T Consensus 246 ~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~ 287 (307)
T 1t9h_A 246 ELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQ 287 (307)
T ss_dssp HHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCH
T ss_pred HHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChH
Confidence 994 22 00 001123456788888887754
No 161
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.95 E-value=1.7e-12 Score=137.74 Aligned_cols=170 Identities=16% Similarity=0.186 Sum_probs=109.0
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhc------------cCCCCCcEEEECCccCCCCCh-HHHhcce---EEEecCCCC
Q psy5743 424 KIQSGSMTSVIGSSGSGKSTLAMLLLR------------LYDPQNGKILIDGVDIKELDP-MYLRSQI---GSVSQEPTL 487 (644)
Q Consensus 424 ~i~~G~~vaIvG~SGsGKSTLl~lL~g------------~~~p~~G~I~idg~~i~~~~~-~~lr~~i---~~V~Q~~~L 487 (644)
++++|.+++|||++|+|||||++.|.| ..+|+.|.|.++|..+..+.. -.-++.+ ..+.+.|-+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 467899999999999999999999999 678999999999854321110 0001122 366677766
Q ss_pred Ccc-cHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCC--CEEE
Q psy5743 488 FSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKS--KILL 564 (644)
Q Consensus 488 f~g-TIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p--~Ili 564 (644)
..+ |-.|++ ..+....++.+..--++.+. .+ ...-..+||+. || ++++
T Consensus 96 ~~~~s~~e~L-----------~~~fl~~ir~~d~il~Vvd~---~~---d~~i~~v~~~~------------dP~~di~i 146 (392)
T 1ni3_A 96 TKGASTGVGL-----------GNAFLSHVRAVDAIYQVVRA---FD---DAEIIHVEGDV------------DPIRDLSI 146 (392)
T ss_dssp CCCCCSSSSS-----------CHHHHHHHTTCSEEEEEEEC---CC---TTCSSCCSSSS------------CHHHHHHH
T ss_pred ccCCcHHHHH-----------HHHHHHHHHHHHHHHHHHhc---cc---cceeeeecccc------------Ccchhhhh
Confidence 543 111111 11222222222111111111 11 12223356652 89 9999
Q ss_pred eecccCCCCHHHHHHHHHHHHHH-cC-CceEEEEccCchHH-hhcCEEE-EEeCC-eEEEecChh
Q psy5743 565 LDEATSALDAENEYLVQSAIEKL-IE-GKTVLTIAHRLSTI-RKSNQIC-VLDKG-KIVEIGSYA 624 (644)
Q Consensus 565 LDEaTSaLD~~~e~~i~~~l~~~-~~-~~TvI~IaHrl~~i-~~aD~Ii-vl~~G-~ive~Gt~~ 624 (644)
+|||++.+|.+.-+...+.+... .+ ++|+ ++|.+..+ .-||+|. +|++| +++..|+.+
T Consensus 147 ldeel~~~D~~~~~k~~~~l~~~~~~~g~ti--~sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~~ 209 (392)
T 1ni3_A 147 IVDELLIKDAEFVEKHLEGLRKITSRGANTL--EMKAKKEEQAIIEKVYQYLTETKQPIRKGDWS 209 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCSSCSS--SHHHHHHHHHHHHHHHHHHHTTCSCGGGSCCC
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHhcCCcc--ccccHHHHHHHHHHHHHHhccCCceeecCCCC
Confidence 99999999999888888888776 44 4553 49998876 5589999 99999 887666543
No 162
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.94 E-value=8.9e-09 Score=102.21 Aligned_cols=166 Identities=14% Similarity=0.137 Sum_probs=89.8
Q ss_pred cccce-eEEEeCCCEEEEECCCCCcHHHHHH-HHhccCCCCCcEEEECCccCCCCChHHHhc---ceEEEecCCCCCccc
Q psy5743 417 ILNDL-SLKIQSGSMTSVIGSSGSGKSTLAM-LLLRLYDPQNGKILIDGVDIKELDPMYLRS---QIGSVSQEPTLFSGT 491 (644)
Q Consensus 417 vL~~i-sl~i~~G~~vaIvG~SGsGKSTLl~-lL~g~~~p~~G~I~idg~~i~~~~~~~lr~---~i~~V~Q~~~Lf~gT 491 (644)
.|+++ .--+++|+.++|+||+|||||||+. ++.+..++..+.+++++.. +...+++ .+++.+|+...
T Consensus 11 ~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~----~~~~~~~~~~~~g~~~~~~~~---- 82 (247)
T 2dr3_A 11 GVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE----HPVQVRQNMAQFGWDVKPYEE---- 82 (247)
T ss_dssp THHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS----CHHHHHHHHHTTTCCCHHHHH----
T ss_pred hHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC----CHHHHHHHHHHcCCCHHHHhh----
Confidence 46665 5679999999999999999999955 5555555444555565532 2233222 23333322100
Q ss_pred HHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHc--cCCCEEEeeccc
Q psy5743 492 IYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALI--KKSKILLLDEAT 569 (644)
Q Consensus 492 IreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll--~~p~IliLDEaT 569 (644)
.+|+.+.+.. . +.+..++. .+..+-+. +....+....++.++ .+|+++++|++|
T Consensus 83 -~~~l~~~~~~-----~-------------~~~~~~~~-~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~vviD~~~ 138 (247)
T 2dr3_A 83 -KGMFAMVDAF-----T-------------AGIGKSKE-YEKYIVHD----LTDIREFIEVLRQAIRDINAKRVVVDSVT 138 (247)
T ss_dssp -HTSEEEEECS-----T-------------TTTCC--C-CCSCBCSC----CSSHHHHHHHHHHHHHHHTCCEEEEETSG
T ss_pred -CCcEEEEecc-----h-------------hhcccccc-cccccccC----ccCHHHHHHHHHHHHHHhCCCEEEECCch
Confidence 0122111100 0 00000000 00001111 123344445555554 479999999999
Q ss_pred CCC--CHHHHHHHHHHHHHHc--CCceEEEEccCchH---------HhhcCEEEEEeC
Q psy5743 570 SAL--DAENEYLVQSAIEKLI--EGKTVLTIAHRLST---------IRKSNQICVLDK 614 (644)
Q Consensus 570 SaL--D~~~e~~i~~~l~~~~--~~~TvI~IaHrl~~---------i~~aD~Iivl~~ 614 (644)
+-+ |....+.+...+.+.. .+.|+|+++|.... ...||.|+.|+.
T Consensus 139 ~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 139 TLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp GGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred HhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 987 5533344444454432 37899999998764 366899999964
No 163
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.93 E-value=1.3e-10 Score=110.50 Aligned_cols=80 Identities=15% Similarity=0.169 Sum_probs=63.8
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhccCCC-CCcEEE----------ECCccCCCCChHHHhcceEEEecCCCCCcccHHHH
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRLYDP-QNGKIL----------IDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYEN 495 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~~~p-~~G~I~----------idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreN 495 (644)
+|+.++|+||||||||||+++|++++++ ..|.|. ++|.++..++.+.+++. +.|+.+++.+++.+|
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge~~g~~~~~~~~~~~~~~---~~~~~~l~~~~~~~n 80 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQD---ISNNEYLEYGSHEDA 80 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHHH---HHTTCEEEEEEETTE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccccCCCeeEEeCHHHHHHH---HHcCCceEEEEEcCc
Confidence 7999999999999999999999999873 445443 47888888888888874 678999999999999
Q ss_pred HhcCCCCCCCCCHHHHHHHHH
Q psy5743 496 ILYGVNDSSSVTKSDIIHAAK 516 (644)
Q Consensus 496 I~~g~~~~~~~~~~~i~~a~~ 516 (644)
.+|.+ .+.+.++++
T Consensus 81 -~yg~~------~~~i~~~l~ 94 (180)
T 1kgd_A 81 -MYGTK------LETIRKIHE 94 (180)
T ss_dssp -EEEEE------HHHHHHHHH
T ss_pred -ccccc------HHHHHHHHH
Confidence 57743 455655554
No 164
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.92 E-value=8.1e-11 Score=112.81 Aligned_cols=143 Identities=25% Similarity=0.191 Sum_probs=76.4
Q ss_pred EEEEECCCCCcHHHHHHHHhccCCC-----------CCcEEEECCccCCC--CChHHHhcceEEEecCCCCCcc--cHHH
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLYDP-----------QNGKILIDGVDIKE--LDPMYLRSQIGSVSQEPTLFSG--TIYE 494 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~~p-----------~~G~I~idg~~i~~--~~~~~lr~~i~~V~Q~~~Lf~g--TIre 494 (644)
+++|+|++|||||||++.+.|...| .+|+|.++|.++.- ++....++..++++|...-.++ ++.|
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 110 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYD 110 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEE
Confidence 6899999999999999999998765 58999999976531 2222222223333321110000 0111
Q ss_pred HHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCH
Q psy5743 495 NILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDA 574 (644)
Q Consensus 495 NI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~ 574 (644)
+... .+.+++....+...-... ...| --.++.. ..|..-..+...+||++.++|+++++| ||++|.
T Consensus 111 ~~~~-------~s~~~~~~~~~~~~~~~~-~~~~---i~~v~nK-~Dl~~~~~~~~~~a~~l~~~~~~~~ld--~Sald~ 176 (191)
T 1oix_A 111 IAKH-------LTYENVERWLKELRDHAD-SNIV---IMLVGNK-SDLRHLRAVPTDEARAFAEKNGLSFIE--TSALDS 176 (191)
T ss_dssp TTCH-------HHHHTHHHHHHHHHHHSC-TTCE---EEEEEEC-GGGGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTC
T ss_pred CcCH-------HHHHHHHHHHHHHHHhcC-CCCc---EEEEEEC-cccccccccCHHHHHHHHHHcCCEEEE--EeCCCC
Confidence 1000 001111111111000000 0000 0001110 011111123478899999999999999 999999
Q ss_pred HHHHHHHHHHHH
Q psy5743 575 ENEYLVQSAIEK 586 (644)
Q Consensus 575 ~~e~~i~~~l~~ 586 (644)
++...+.+.|.+
T Consensus 177 ~~v~~l~~~l~~ 188 (191)
T 1oix_A 177 TNVEAAFQTILT 188 (191)
T ss_dssp TTHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 999888888765
No 165
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.91 E-value=3.2e-11 Score=118.56 Aligned_cols=75 Identities=13% Similarity=0.163 Sum_probs=52.0
Q ss_pred cEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCCh-------
Q psy5743 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDP------- 471 (644)
Q Consensus 399 ~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~------- 471 (644)
.|+++|++..|. . ++++++ ++++|+||||||||||+++|+|++.|++|+|.++|.++...++
T Consensus 9 ~l~l~~~~~~~~----~------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 77 (227)
T 1qhl_A 9 SLTLINWNGFFA----R------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGL 77 (227)
T ss_dssp EEEEEEETTEEE----E------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------C
T ss_pred EEEEEeeecccC----C------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccch
Confidence 488899866552 1 455666 8999999999999999999999999999999999999844332
Q ss_pred -HHHhcceEEEecC
Q psy5743 472 -MYLRSQIGSVSQE 484 (644)
Q Consensus 472 -~~lr~~i~~V~Q~ 484 (644)
...+..+++|+|+
T Consensus 78 ~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 78 HGKLKAGVCYSMLD 91 (227)
T ss_dssp GGGBCSSEEEEEEE
T ss_pred hhHhhcCcEEEEEe
Confidence 2346789999984
No 166
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.89 E-value=3.7e-12 Score=128.05 Aligned_cols=142 Identities=16% Similarity=0.167 Sum_probs=99.4
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceE
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~ 479 (644)
.+++++...|. .+.+++++++++++| ++|+||+|||||||++++.+... .|.|.++|.++........++.++
T Consensus 26 ~~l~~l~~~~~---~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~ 98 (254)
T 1ixz_A 26 EELKEIVEFLK---NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVR 98 (254)
T ss_dssp HHHHHHHHHHH---CHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHH
T ss_pred HHHHHHHHHHH---CHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHH
Confidence 45677777774 246899999999999 99999999999999999999986 799999998876655555667788
Q ss_pred EEecCCC-CC-cccHHHHH-hcCCCCCC--CCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHH
Q psy5743 480 SVSQEPT-LF-SGTIYENI-LYGVNDSS--SVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIAR 554 (644)
Q Consensus 480 ~V~Q~~~-Lf-~gTIreNI-~~g~~~~~--~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLAR 554 (644)
.++|+.. .+ .-++.||| .++..... ....++..+.+ ..+. ..|||||+||..+|+
T Consensus 99 ~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~---------~~ll-----------~~l~g~~~~~~~i~~ 158 (254)
T 1ixz_A 99 DLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTL---------NQLL-----------VEMDGFEKDTAIVVM 158 (254)
T ss_dssp HHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHH---------HHHH-----------HHHHTCCTTCCEEEE
T ss_pred HHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHH---------HHHH-----------HHHhCCCCCCCEEEE
Confidence 8888754 23 34566777 44321100 00111211111 1111 136799999999999
Q ss_pred HHccCCCEEEeecccC
Q psy5743 555 ALIKKSKILLLDEATS 570 (644)
Q Consensus 555 All~~p~IliLDEaTS 570 (644)
|+..+|++ +|++.-
T Consensus 159 a~t~~p~~--ld~~l~ 172 (254)
T 1ixz_A 159 AATNRPDI--LDPALL 172 (254)
T ss_dssp EEESCGGG--SCGGGG
T ss_pred EccCCchh--CCHHHc
Confidence 99999987 788875
No 167
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.85 E-value=1.2e-09 Score=123.53 Aligned_cols=157 Identities=16% Similarity=0.152 Sum_probs=103.1
Q ss_pred CccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCC-cEEEECCccCCCCChHHHhcceEEEecCC--------
Q psy5743 415 AVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQN-GKILIDGVDIKELDPMYLRSQIGSVSQEP-------- 485 (644)
Q Consensus 415 ~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~-G~I~idg~~i~~~~~~~lr~~i~~V~Q~~-------- 485 (644)
..+++++++.+++|+.+.|+||+|+|||||++.|.+++++.. |.+.+++.+.....+ .++++||..
T Consensus 47 ~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p-----~i~~~p~g~~~~~~e~~ 121 (604)
T 3k1j_A 47 EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMP-----RIKTVPACQGRRIVEKY 121 (604)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSC-----EEEEEETTHHHHHHHHH
T ss_pred hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCC-----cEEEEecchHHHHHHHH
Confidence 468999999999999999999999999999999999999988 899999987766543 688888754
Q ss_pred --------------CCC-cccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHH
Q psy5743 486 --------------TLF-SGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRI 550 (644)
Q Consensus 486 --------------~Lf-~gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRi 550 (644)
+.| ..++.+|+..++....... +... -......+-..++.. ......+|+|+.|++
T Consensus 122 ~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~---~v~~-----~~~~~~~L~G~~~~~-~~~~g~~~~g~~~~i 192 (604)
T 3k1j_A 122 REKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAP---FIDA-----TGAHAGALLGDVRHD-PFQSGGLGTPAHERV 192 (604)
T ss_dssp HHHHHHHTCC-----------CCCEEEECCTTCSSCC---EEEC-----TTCCHHHHHCEECCC-CC----CCCCGGGGE
T ss_pred HHhhccchhhhhhcccccccccccceeeccccCCCCC---EEEc-----CCCCHHhcCceEEec-hhhcCCccccccccc
Confidence 111 1122333332211000000 0000 000000111011111 012235999999999
Q ss_pred HHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHH
Q psy5743 551 AIARALIKKSKILLLDEATSALDAENEYLVQSAIEK 586 (644)
Q Consensus 551 aLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~ 586 (644)
..++....++.+|+|||... |++.....+.+.|.+
T Consensus 193 ~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 193 EPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp ECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred cCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 99999999999999999988 798888888888864
No 168
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.83 E-value=7.5e-09 Score=108.64 Aligned_cols=143 Identities=21% Similarity=0.339 Sum_probs=84.3
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcE-EEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCC
Q psy5743 424 KIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGK-ILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVND 502 (644)
Q Consensus 424 ~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~-I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~ 502 (644)
-+++|+.+.|.||+|||||||+..++.......|. ++++... ..++ .+.+++++.+|+ +.+..|
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~--~~~~-~~a~~lG~~~~~-----------l~i~~~- 121 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH--ALDP-EYAKKLGVDTDS-----------LLVSQP- 121 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC--CCCH-HHHHHTTCCGGG-----------CEEECC-
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC--CcCH-HHHHHcCCCHHH-----------eEEecC-
Confidence 58899999999999999999988887665544443 3344321 1111 111112211111 101000
Q ss_pred CCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccC--CCEEEeecccCCC--------
Q psy5743 503 SSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKK--SKILLLDEATSAL-------- 572 (644)
Q Consensus 503 ~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~--p~IliLDEaTSaL-------- 572 (644)
.++ .|-+.++|++.++ |+++++||+++-+
T Consensus 122 ---------------------------------------~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~ 160 (349)
T 2zr9_A 122 ---------------------------------------DTG--EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGE 160 (349)
T ss_dssp ---------------------------------------SSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC
T ss_pred ---------------------------------------CCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccc
Confidence 012 2445688888765 9999999999998
Q ss_pred --CH---HHHHHHHHHHHHH-----cCCceEEEEccCch----------------HH-hhcCEEEEEeCCeEEEecC
Q psy5743 573 --DA---ENEYLVQSAIEKL-----IEGKTVLTIAHRLS----------------TI-RKSNQICVLDKGKIVEIGS 622 (644)
Q Consensus 573 --D~---~~e~~i~~~l~~~-----~~~~TvI~IaHrl~----------------~i-~~aD~Iivl~~G~ive~Gt 622 (644)
|. ..++.+.+.++++ ..+.|+|+++|-.+ .+ ..||.++.++.+++...|+
T Consensus 161 ~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~ 237 (349)
T 2zr9_A 161 MGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGT 237 (349)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeeecCc
Confidence 32 1222333444333 13889999999543 13 4689999998877654444
No 169
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.82 E-value=1.2e-08 Score=111.20 Aligned_cols=177 Identities=11% Similarity=0.140 Sum_probs=110.8
Q ss_pred ccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCc-EEEECCccCCCCChHHHhcce-EEEecCCCCCcccHH
Q psy5743 416 VILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNG-KILIDGVDIKELDPMYLRSQI-GSVSQEPTLFSGTIY 493 (644)
Q Consensus 416 ~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G-~I~idg~~i~~~~~~~lr~~i-~~V~Q~~~Lf~gTIr 493 (644)
+.|+++..-+++|+.+.|.|++|+|||||+.-+++...+..| .|.+-+.+ .+...++.++ +....-+ .
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E---~s~~~l~~r~~~~~~~~~-------~ 260 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE---MSAQQLVMRMLCAEGNIN-------A 260 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS---SCHHHHHHHHHHHHHTCC-------H
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC---CCHHHHHHHHHHHHcCCC-------H
Confidence 458888878999999999999999999999999998876555 56655533 3445554432 1111100 1
Q ss_pred HHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHc--cCCCEEEeecccCC
Q psy5743 494 ENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALI--KKSKILLLDEATSA 571 (644)
Q Consensus 494 eNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll--~~p~IliLDEaTSa 571 (644)
+++.-|. .++++..++.+..+. +...| -.+-+ ...+|++|.+ +.||++. .+|+++++|+++.-
T Consensus 261 ~~l~~g~-----l~~~~~~~~~~a~~~---l~~~~----l~i~d-~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~ 325 (454)
T 2r6a_A 261 QNLRTGK-----LTPEDWGKLTMAMGS---LSNAG----IYIDD-TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLI 325 (454)
T ss_dssp HHHHTSC-----CCHHHHHHHHHHHHH---HHSSC----EEEEC-CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGS
T ss_pred HHHhcCC-----CCHHHHHHHHHHHHH---HhcCC----EEEEC-CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHh
Confidence 2232231 445554333332221 11111 12222 2478999876 6777776 57999999999997
Q ss_pred CCHH--------HHHHHHHHHHHHc--CCceEEEEcc-----------Cch---------HHhhcCEEEEEeCCeE
Q psy5743 572 LDAE--------NEYLVQSAIEKLI--EGKTVLTIAH-----------RLS---------TIRKSNQICVLDKGKI 617 (644)
Q Consensus 572 LD~~--------~e~~i~~~l~~~~--~~~TvI~IaH-----------rl~---------~i~~aD~Iivl~~G~i 617 (644)
.+.. .-..+.+.|+.+. .+.++|+++| |+. .-..||.|+.|..++.
T Consensus 326 ~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 326 QGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp CCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 7431 1245555565543 2789999999 132 3356999999987654
No 170
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.81 E-value=6.9e-10 Score=107.71 Aligned_cols=55 Identities=24% Similarity=0.212 Sum_probs=46.6
Q ss_pred eeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCC
Q psy5743 421 LSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGV 500 (644)
Q Consensus 421 isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~ 500 (644)
+-=++++|++++|+|+|||||||+++.|.+.++ .+.+++||++++++ +|+.++.
T Consensus 14 ~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-----------------------~~~~i~~D~~~~~~---~~~~~~~ 67 (207)
T 2qt1_A 14 LVPRGSKTFIIGISGVTNSGKTTLAKNLQKHLP-----------------------NCSVISQDDFFKPE---SEIETDK 67 (207)
T ss_dssp CCCCSCCCEEEEEEESTTSSHHHHHHHHHTTST-----------------------TEEEEEGGGGBCCG---GGSCBCT
T ss_pred ccccCCCCeEEEEECCCCCCHHHHHHHHHHhcC-----------------------CcEEEeCCccccCH---hHhhccc
Confidence 334578999999999999999999999999885 48899999999987 6776654
Q ss_pred C
Q psy5743 501 N 501 (644)
Q Consensus 501 ~ 501 (644)
+
T Consensus 68 ~ 68 (207)
T 2qt1_A 68 N 68 (207)
T ss_dssp T
T ss_pred c
Confidence 3
No 171
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.79 E-value=1.7e-09 Score=123.37 Aligned_cols=75 Identities=19% Similarity=0.193 Sum_probs=66.1
Q ss_pred eEEEeCCCEEEEECCCCCcHHHHHHHHhccCCC--CCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHh
Q psy5743 422 SLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDP--QNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENIL 497 (644)
Q Consensus 422 sl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p--~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~ 497 (644)
|+++++|.+++|+|++|+|||||++.|++...+ ..|+| .+|.++.++.+.+.++.+++.+|.+.++.++++.||.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nli 79 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLL 79 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEE
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEE
Confidence 456789999999999999999999999988765 78999 7999999999999999999999999999888888875
No 172
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.79 E-value=3.1e-11 Score=127.66 Aligned_cols=141 Identities=19% Similarity=0.165 Sum_probs=89.1
Q ss_pred CccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHH
Q psy5743 415 AVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYE 494 (644)
Q Consensus 415 ~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIre 494 (644)
..+++++|+++++|+.++|+||+|||||||+++|.|.+ +|++..-+ .. .+.++..+++++|...+| .|
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~~~--~~---~~~~~~~lg~~~q~~~~l----~d 223 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC---GGKALNVN--LP---LDRLNFELGVAIDQFLVV----FE 223 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH---CCEEECCS--SC---TTTHHHHHGGGTTCSCEE----ET
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc---CCcEEEEe--cc---chhHHHHHHHhcchhHHH----HH
Confidence 35899999999999999999999999999999999964 68876521 11 122344588899987653 34
Q ss_pred HHhcCCCCCCCC---CH----HHHHHHHHH---Hhhc----cchhh-hhcCccccccCCCCCCChhHHHHHHHHHHHccC
Q psy5743 495 NILYGVNDSSSV---TK----SDIIHAAKE---ANAY----GFVID-FKNGFDTIVGERGIMLSGGQKQRIAIARALIKK 559 (644)
Q Consensus 495 NI~~g~~~~~~~---~~----~~i~~a~~~---a~l~----~~i~~-lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~ 559 (644)
++....+..... +. ..+.+.+.- +.+. +.+.. +|.| .+.++-..+++|.+||++.+.+++.+
T Consensus 224 d~~~~~~~~r~l~~~~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg---~ld~~~~~l~~~~~~rl~~~~~l~~~ 300 (377)
T 1svm_A 224 DVKGTGGESRDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPG---IVTMNEYSVPKTLQARFVKQIDFRPK 300 (377)
T ss_dssp TCCCSTTTTTTCCCCSHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCE---EEEECSCCCCHHHHTTEEEEEECCCC
T ss_pred HHHHHHHHHhhccccCcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCc---ccChhHHhhcHHHHHHHhhhhccCCC
Confidence 554443200000 10 111121110 0000 00000 1111 23345566899999999999999999
Q ss_pred CCEEE-eecccC
Q psy5743 560 SKILL-LDEATS 570 (644)
Q Consensus 560 p~Ili-LDEaTS 570 (644)
|++++ ||+|+.
T Consensus 301 pDLliyLd~~~~ 312 (377)
T 1svm_A 301 DYLKHCLERSEF 312 (377)
T ss_dssp HHHHHHHHTCTH
T ss_pred CCeEEEEeCCHH
Confidence 99998 999987
No 173
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.75 E-value=2.7e-09 Score=103.77 Aligned_cols=71 Identities=24% Similarity=0.270 Sum_probs=56.9
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhccCCC-CCcEEE----------ECCccCCCCChHHHhcceEEEecCCCCCcccHHH
Q psy5743 426 QSGSMTSVIGSSGSGKSTLAMLLLRLYDP-QNGKIL----------IDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYE 494 (644)
Q Consensus 426 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~p-~~G~I~----------idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIre 494 (644)
++|+.++|+||||||||||++.|++.++| ..+.+. .+|.+....+.+.+++.+ .|+.+++.+++.+
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~---~~~~~le~~~~~~ 82 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAI---KDGKMLEYAEYVG 82 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHH---HTTCEEEEEEETT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEecHHHHHHHH---hcCcEEEEEEEcc
Confidence 58999999999999999999999999986 333333 457777777888877765 6888888888888
Q ss_pred HHhcCC
Q psy5743 495 NILYGV 500 (644)
Q Consensus 495 NI~~g~ 500 (644)
| .||.
T Consensus 83 ~-~yg~ 87 (208)
T 3tau_A 83 N-YYGT 87 (208)
T ss_dssp E-EEEE
T ss_pred c-cCCC
Confidence 8 5774
No 174
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.72 E-value=5.1e-09 Score=100.69 Aligned_cols=139 Identities=24% Similarity=0.185 Sum_probs=73.7
Q ss_pred EEEEECCCCCcHHHHHHHHhccCC-----CC------CcEEEECCccCC-----CCChHHHhcceEEEecCCC--C--Cc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLYD-----PQ------NGKILIDGVDIK-----ELDPMYLRSQIGSVSQEPT--L--FS 489 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~~-----p~------~G~I~idg~~i~-----~~~~~~lr~~i~~V~Q~~~--L--f~ 489 (644)
+++|+|++|||||||++.+.|... |+ .|+|.++|.++. .-..+.+++......|+.. + |+
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 86 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYD 86 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEEEE
Confidence 689999999999999999999842 43 678999997652 1222333333333333321 1 11
Q ss_pred ccHHHHHhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeeccc
Q psy5743 490 GTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEAT 569 (644)
Q Consensus 490 gTIreNI~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaT 569 (644)
.+-.. +.+++....+...-.. -...| --.++.. ..|..-.......||++.++|++.++| |
T Consensus 87 ~~~~~------------s~~~~~~~~~~~~~~~-~~~~~---i~~v~nK-~Dl~~~~~~~~~~a~~l~~~~~~~~~d--~ 147 (199)
T 2f9l_A 87 IAKHL------------TYENVERWLKELRDHA-DSNIV---IMLVGNK-SDLRHLRAVPTDEARAFAEKNNLSFIE--T 147 (199)
T ss_dssp TTCHH------------HHHTHHHHHHHHHHHS-CTTCE---EEEEEEC-TTCGGGCCSCHHHHHHHHHHTTCEEEE--C
T ss_pred CcCHH------------HHHHHHHHHHHHHHhc-CCCCe---EEEEEEC-cccccccCcCHHHHHHHHHHcCCeEEE--E
Confidence 11110 0111111111110000 00000 0011111 011110011245699999999999999 9
Q ss_pred CCCCHHHHHHHHHHHHHH
Q psy5743 570 SALDAENEYLVQSAIEKL 587 (644)
Q Consensus 570 SaLD~~~e~~i~~~l~~~ 587 (644)
||+|.++-..+.+.|.+.
T Consensus 148 Sal~~~~i~~l~~~l~~~ 165 (199)
T 2f9l_A 148 SALDSTNVEEAFKNILTE 165 (199)
T ss_dssp CTTTCTTHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHH
Confidence 999999888887777553
No 175
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.70 E-value=3.3e-08 Score=107.63 Aligned_cols=123 Identities=21% Similarity=0.299 Sum_probs=81.8
Q ss_pred ccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHH
Q psy5743 416 VILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYEN 495 (644)
Q Consensus 416 ~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreN 495 (644)
..++++++++++| +.|+||+|+|||||++.+.+..... +-++ +..
T Consensus 39 ~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~~----------------------f~~i---------s~~-- 83 (476)
T 2ce7_A 39 SKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANVP----------------------FFHI---------SGS-- 83 (476)
T ss_dssp HHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTCC----------------------EEEE---------EGG--
T ss_pred HHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCCC----------------------eeeC---------CHH--
Confidence 4677888888888 9999999999999999999854210 1011 000
Q ss_pred HhcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccC-----
Q psy5743 496 ILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATS----- 570 (644)
Q Consensus 496 I~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTS----- 570 (644)
+++.. .+| .|++++|-.+++|....|.|+++||+.+
T Consensus 84 --------------------------~~~~~-------~~g------~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r 124 (476)
T 2ce7_A 84 --------------------------DFVEL-------FVG------VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHR 124 (476)
T ss_dssp --------------------------GTTTC-------CTT------HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC-
T ss_pred --------------------------HHHHH-------Hhc------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhc
Confidence 00000 112 2788999999999999999999999943
Q ss_pred -----CCCHHHHHHHHHHHHHH-----cCCceEEEEccCchHHh-------hcCEEEEE
Q psy5743 571 -----ALDAENEYLVQSAIEKL-----IEGKTVLTIAHRLSTIR-------KSNQICVL 612 (644)
Q Consensus 571 -----aLD~~~e~~i~~~l~~~-----~~~~TvI~IaHrl~~i~-------~aD~Iivl 612 (644)
+.|.+.++.+.+.+..+ ..+..+|..||+++.+. ..|+.+.+
T Consensus 125 ~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i 183 (476)
T 2ce7_A 125 GAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVV 183 (476)
T ss_dssp --------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCGGGGSTTSSCEEEEC
T ss_pred ccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhchhhcccCcceeEeec
Confidence 56666666666555443 13568899999986543 45655544
No 176
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.70 E-value=8e-09 Score=109.20 Aligned_cols=44 Identities=20% Similarity=0.261 Sum_probs=34.9
Q ss_pred ccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhc--cCCCCCcEEEEC
Q psy5743 416 VILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLR--LYDPQNGKILID 462 (644)
Q Consensus 416 ~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g--~~~p~~G~I~id 462 (644)
.+|+++++++| .|+|||++|||||||++.|.| ++++.+|.+.-.
T Consensus 25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~ 70 (360)
T 3t34_A 25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRR 70 (360)
T ss_dssp CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCS
T ss_pred cccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCc
Confidence 47899999999 999999999999999999999 778877766533
No 177
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.66 E-value=3.5e-09 Score=102.31 Aligned_cols=35 Identities=20% Similarity=0.283 Sum_probs=30.1
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCc
Q psy5743 423 LKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNG 457 (644)
Q Consensus 423 l~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G 457 (644)
+++++|+.++|+|||||||||++++|.+++.|+.|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 46889999999999999999999999999977655
No 178
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.62 E-value=5e-09 Score=99.31 Aligned_cols=99 Identities=16% Similarity=0.265 Sum_probs=63.5
Q ss_pred cceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCc--cCCCCChH----HHhcceEEEecCCC------
Q psy5743 419 NDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGV--DIKELDPM----YLRSQIGSVSQEPT------ 486 (644)
Q Consensus 419 ~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~--~i~~~~~~----~lr~~i~~V~Q~~~------ 486 (644)
+++++++.+| +++|+||||||||||+++|.+++.+..|...-.+. ++-..... ..+..|.++.|++.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~ 96 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNEDRGFPID 96 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTTCCSSSS
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCCCcccccC
Confidence 6789999999 99999999999999999999999887775443331 11111110 23457999999863
Q ss_pred ----CCcccHHHH----HhcCCCCCCCCCHHHHHHHHHHHhhc
Q psy5743 487 ----LFSGTIYEN----ILYGVNDSSSVTKSDIIHAAKEANAY 521 (644)
Q Consensus 487 ----Lf~gTIreN----I~~g~~~~~~~~~~~i~~a~~~a~l~ 521 (644)
.+..++..+ +... ....+.+++.+.++..++.
T Consensus 97 ~~~~~i~r~~~~~~~~~~~i~---g~~~~~~~~~~~l~~~~l~ 136 (182)
T 3kta_A 97 EDEVVIRRRVYPDGRSSYWLN---GRRATRSEILDILTAAMIS 136 (182)
T ss_dssp SSEEEEEEEECTTSCEEEEET---TEEECHHHHHHHHHHTTCC
T ss_pred CcEEEEEEEEEeCCcEEEEEC---CeEcCHHHHHHHHHHcCCC
Confidence 222222111 1111 1125677888888777765
No 179
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.60 E-value=3.7e-09 Score=105.57 Aligned_cols=52 Identities=19% Similarity=0.397 Sum_probs=36.3
Q ss_pred cEEEEEE-EEEcCCCCCCccccceeEEEeC---CCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 399 EIDFNNI-RFSYPSRPDAVILNDLSLKIQS---GSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 399 ~I~~~~v-sf~Y~~~~~~~vL~~isl~i~~---G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
.++++|+ +|+|.+ +.++|+|+||+|++ |++++|+|++||||||+.++|.+.+
T Consensus 17 ~l~~~~~~~~~~~~--~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFDE--EQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp -----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEecC--cchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5899999 999932 45799999999999 9999999999999999999999866
No 180
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.59 E-value=3.9e-09 Score=117.02 Aligned_cols=92 Identities=25% Similarity=0.221 Sum_probs=65.1
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCc-EE-EECCccCCC-------CCh---HHHhcceEEEecCCCCCcc
Q psy5743 423 LKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNG-KI-LIDGVDIKE-------LDP---MYLRSQIGSVSQEPTLFSG 490 (644)
Q Consensus 423 l~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G-~I-~idg~~i~~-------~~~---~~lr~~i~~V~Q~~~Lf~g 490 (644)
..+++|+.++|+|+||||||||+++|.|.+.|++| +| ++||.++.+ ++. ..+++.+++|.|+ -
T Consensus 364 ~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~~l~f~~~~r~~~~r~i~~v~q~-----l 438 (552)
T 3cr8_A 364 PRERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDVNVRRIGFVASE-----I 438 (552)
T ss_dssp CGGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTSSCCCSHHHHHHHHHHHHHHHHH-----H
T ss_pred cccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhccccCCCHHHHHHHHHHHHHHHHH-----H
Confidence 35789999999999999999999999999999987 78 599987643 232 2355678999987 2
Q ss_pred cHHHHHhcCCCCC-CCCCHHHHHHHHHHHh
Q psy5743 491 TIYENILYGVNDS-SSVTKSDIIHAAKEAN 519 (644)
Q Consensus 491 TIreNI~~g~~~~-~~~~~~~i~~a~~~a~ 519 (644)
+..+|+.+..... ....+++..++++..+
T Consensus 439 ~~~~~ivi~~~~~~~~~~r~~~r~lL~~~g 468 (552)
T 3cr8_A 439 TKNRGIAICAPIAPYRQTRRDVRAMIEAVG 468 (552)
T ss_dssp HHTTCEEEECCCCCCHHHHHHHHHHHHTTS
T ss_pred HhcCCEEEEecCCccHHHHHHHHHHHHHcC
Confidence 4566766543210 0123455666666555
No 181
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.58 E-value=2.4e-08 Score=96.29 Aligned_cols=52 Identities=38% Similarity=0.520 Sum_probs=46.0
Q ss_pred CccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEE--EECCccCC
Q psy5743 415 AVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI--LIDGVDIK 467 (644)
Q Consensus 415 ~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I--~idg~~i~ 467 (644)
....+..++..++|+.++|+|+|||||||++++|.+.+. ..|.+ ++||.++.
T Consensus 12 ~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 12 VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVR 65 (200)
T ss_dssp CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHT
T ss_pred cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhh
Confidence 346778888899999999999999999999999999997 78988 99986654
No 182
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.55 E-value=2.1e-08 Score=105.88 Aligned_cols=141 Identities=18% Similarity=0.225 Sum_probs=84.8
Q ss_pred EEEEECCCCCcHHHHHHHHhccCC-----------CCCcEEEECCccCCCCChHHHhcceEEEecCCCC----CcccHH-
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLYD-----------PQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTL----FSGTIY- 493 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~~-----------p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~L----f~gTIr- 493 (644)
.|+|+|++|+|||||++.|.|... |+.|.|.++|.++. +....|++.|.|.- |..|+.
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~------l~DT~G~i~~lp~~lve~f~~tl~~ 254 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM------LVDTVGFIRGIPPQIVDAFFVTLSE 254 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE------EEECCCBCSSCCGGGHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE------EEeCCCchhcCCHHHHHHHHHHHHH
Confidence 499999999999999999999875 67899999997653 33456776664432 222322
Q ss_pred ----HHHhcCCCCCCCCC---HHHH---HHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHH----HHH-cc
Q psy5743 494 ----ENILYGVNDSSSVT---KSDI---IHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIA----RAL-IK 558 (644)
Q Consensus 494 ----eNI~~g~~~~~~~~---~~~i---~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLA----RAl-l~ 558 (644)
|++.+--+. .... ++.+ .+.++..++. ..| --.|+..-..+|+|++||+.++ +++ ..
T Consensus 255 ~~~aD~il~VvD~-s~~~~~~~~~~~~~~~~L~~l~~~----~~p---~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~ 326 (364)
T 2qtf_A 255 AKYSDALILVIDS-TFSENLLIETLQSSFEILREIGVS----GKP---ILVTLNKIDKINGDLYKKLDLVEKLSKELYSP 326 (364)
T ss_dssp GGGSSEEEEEEET-TSCHHHHHHHHHHHHHHHHHHTCC----SCC---EEEEEECGGGCCSCHHHHHHHHHHHHHHHCSC
T ss_pred HHhCCEEEEEEEC-CCCcchHHHHHHHHHHHHHHhCcC----CCC---EEEEEECCCCCCchHHHHHHHHHHHHHHhcCC
Confidence 122221110 1111 1111 2222222211 111 1223444445788899988877 776 44
Q ss_pred CCCEEEeecccCCCCHHHHHHHHHHHHHHc
Q psy5743 559 KSKILLLDEATSALDAENEYLVQSAIEKLI 588 (644)
Q Consensus 559 ~p~IliLDEaTSaLD~~~e~~i~~~l~~~~ 588 (644)
+|++ +||||+|.++-..+.+.|.+..
T Consensus 327 ~~~~----~~~SA~~g~gi~~L~~~I~~~l 352 (364)
T 2qtf_A 327 IFDV----IPISALKRTNLELLRDKIYQLA 352 (364)
T ss_dssp EEEE----EECBTTTTBSHHHHHHHHHHHH
T ss_pred CCcE----EEEECCCCcCHHHHHHHHHHHh
Confidence 5555 8999999998888888886643
No 183
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.55 E-value=1.4e-08 Score=97.97 Aligned_cols=59 Identities=22% Similarity=0.228 Sum_probs=43.6
Q ss_pred eEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHh-cceEEEecCCC
Q psy5743 422 SLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLR-SQIGSVSQEPT 486 (644)
Q Consensus 422 sl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr-~~i~~V~Q~~~ 486 (644)
.++.++|+.++|+|+||||||||+++|.+.+ |.+.++|.++.. ....+ ...++++|++.
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~--~~~~~~~~~g~~~~~~~ 82 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHS--PENIATMQRGIPLTDED 82 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSC--HHHHHHHHTTCCCCHHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEccccccc--HHHHHHHhcCCCCCCcc
Confidence 3567899999999999999999999999988 999999988753 22222 24677777644
No 184
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.51 E-value=3.1e-08 Score=95.43 Aligned_cols=45 Identities=20% Similarity=0.151 Sum_probs=25.3
Q ss_pred EcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 408 SYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 408 ~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
+|+.++..++++||||++++|+.++|+|++||||||+.+.|.+.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 5 HHHSSGVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 466556778999999999999999999999999999999999877
No 185
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.49 E-value=3.6e-08 Score=102.15 Aligned_cols=68 Identities=18% Similarity=0.229 Sum_probs=56.6
Q ss_pred ccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCCh----HHH-----hcceEEE-ecCC
Q psy5743 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDP----MYL-----RSQIGSV-SQEP 485 (644)
Q Consensus 418 L~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~----~~l-----r~~i~~V-~Q~~ 485 (644)
++++||++++|++++|+|++||||||++..|++.+.+..|+|.+.+.|+..... ..| +..+.++ +|..
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~ 172 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKL 172 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSST
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCC
Confidence 467888889999999999999999999999999999999999999988865432 345 5678888 6654
No 186
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.46 E-value=5.4e-09 Score=114.48 Aligned_cols=142 Identities=16% Similarity=0.193 Sum_probs=95.4
Q ss_pred EEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEE
Q psy5743 401 DFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGS 480 (644)
Q Consensus 401 ~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~ 480 (644)
+++++...|. .+.+++++++++++| +.|+||+|+|||||++++.+... .|.|.++|.++.+......++++..
T Consensus 42 ~l~~lv~~l~---~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~~ 114 (499)
T 2dhr_A 42 ELKEIVEFLK---NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRD 114 (499)
T ss_dssp HHHHHHHHHH---CGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHHH
T ss_pred HHHHHHHHhh---chhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHHH
Confidence 4455554453 245789999999999 99999999999999999999985 6899999999877666666677888
Q ss_pred EecCCC-CCc-ccHHHHH-hcCCCCCC--CCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHH
Q psy5743 481 VSQEPT-LFS-GTIYENI-LYGVNDSS--SVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARA 555 (644)
Q Consensus 481 V~Q~~~-Lf~-gTIreNI-~~g~~~~~--~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARA 555 (644)
++|+.. ... -.+-|+| .++..... ....++..+.+.. .+. .|||||+|+..+++|
T Consensus 115 lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~-----LL~---------------~Ldg~~~~~~viviA 174 (499)
T 2dhr_A 115 LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQ-----LLV---------------EMDGFEKDTAIVVMA 174 (499)
T ss_dssp HTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHH-----HHH---------------HGGGCCSSCCCEEEE
T ss_pred HHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHH-----HHH---------------HhcccccCccEEEEE
Confidence 888764 232 3456677 34321100 0112222222111 111 256778888888888
Q ss_pred HccCCCEEEeecccCC
Q psy5743 556 LIKKSKILLLDEATSA 571 (644)
Q Consensus 556 ll~~p~IliLDEaTSa 571 (644)
...+|++ ||||.-.
T Consensus 175 atn~p~~--LD~aLlr 188 (499)
T 2dhr_A 175 ATNRPDI--LDPALLR 188 (499)
T ss_dssp CCSCGGG--SCTTTSS
T ss_pred ecCChhh--cCccccc
Confidence 8888877 7887653
No 187
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.44 E-value=1.4e-07 Score=91.10 Aligned_cols=126 Identities=19% Similarity=0.263 Sum_probs=73.1
Q ss_pred EEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHH
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKS 509 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~ 509 (644)
.++|+|++||||||+.+.|.++ |...+|+-+ +.+. +. .+. .+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l-----g~~~id~d~--------~~~~------------------~~--~~~-----~~ 45 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL-----GVPLVDADV--------VARE------------------VV--AKD-----SP 45 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT-----TCCEEEHHH--------HHHH------------------TT--CSS-----CH
T ss_pred EEEEECCCCCCHHHHHHHHHHC-----CCcccchHH--------HHHH------------------Hc--cCC-----hH
Confidence 6899999999999999999983 666666522 1111 10 010 11
Q ss_pred HHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcC
Q psy5743 510 DIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE 589 (644)
Q Consensus 510 ~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~ 589 (644)
.+.+..+..| +. .-.++|+.+|..+++.++.+|+.+-.+ ++.+++...+.+.+.+... .
T Consensus 46 ~~~~i~~~~g-----------------~~-~~~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~-~ 104 (206)
T 1jjv_A 46 LLSKIVEHFG-----------------AQ-ILTEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ-T 104 (206)
T ss_dssp HHHHHHHHHC-----------------TT-CC------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC-C
T ss_pred HHHHHHHHhC-----------------HH-HhccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc-C
Confidence 1111112211 11 123688999999999999888654333 3345565555555555433 3
Q ss_pred CceEEEEccCchH---HhhcCEEEEEeC
Q psy5743 590 GKTVLTIAHRLST---IRKSNQICVLDK 614 (644)
Q Consensus 590 ~~TvI~IaHrl~~---i~~aD~Iivl~~ 614 (644)
+.++|+-+|.+.. .+.||.+++++-
T Consensus 105 ~~~vv~~~~~l~e~~~~~~~d~vi~l~~ 132 (206)
T 1jjv_A 105 APYTLFVVPLLIENKLTALCDRILVVDV 132 (206)
T ss_dssp SSEEEEECTTTTTTTCGGGCSEEEEEEC
T ss_pred CCEEEEEechhhhcCcHhhCCEEEEEEC
Confidence 5688888887654 367999999963
No 188
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.41 E-value=1.3e-08 Score=105.14 Aligned_cols=126 Identities=13% Similarity=0.186 Sum_probs=76.6
Q ss_pred CccccceeEEEeCCC------EEEEECCCCCcHHHHHHHHhccCCC--CCcEEEECCccCCCCChHHHhcceEEEecCCC
Q psy5743 415 AVILNDLSLKIQSGS------MTSVIGSSGSGKSTLAMLLLRLYDP--QNGKILIDGVDIKELDPMYLRSQIGSVSQEPT 486 (644)
Q Consensus 415 ~~vL~~isl~i~~G~------~vaIvG~SGsGKSTLl~lL~g~~~p--~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~ 486 (644)
...|++++..+.+++ ++||+||||||||||+++|.+++.+ .+| .++++++|.+
T Consensus 73 ~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~-------------------~v~~i~~D~f 133 (321)
T 3tqc_A 73 RQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHP-------------------NVEVITTDGF 133 (321)
T ss_dssp HHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCC-------------------CEEEEEGGGG
T ss_pred hHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCC-------------------eEEEEeeccc
Confidence 356788888887776 9999999999999999999999974 444 4556667766
Q ss_pred CCcccHHHHH----hcCCCCCCCCCHHHHHHHHHHHhhcc-chhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCC
Q psy5743 487 LFSGTIYENI----LYGVNDSSSVTKSDIIHAAKEANAYG-FVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSK 561 (644)
Q Consensus 487 Lf~gTIreNI----~~g~~~~~~~~~~~i~~a~~~a~l~~-~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~ 561 (644)
.......+.. .+|.|+ ..+.+.+.+.++...-.+ .+ ..|. ||-..+ +|+.-+......|+
T Consensus 134 ~~~~~~l~~~~~~~~~g~P~--~~D~~~l~~~L~~L~~g~~~v-~~P~-yd~~~~-----------~r~~~~~~~v~~~d 198 (321)
T 3tqc_A 134 LYSNAKLEKQGLMKRKGFPE--SYDMPSLLRVLNAIKSGQRNV-RIPV-YSHHYY-----------DIVRGQYEIVDQPD 198 (321)
T ss_dssp BCCHHHHHHTTCGGGTTSGG--GBCHHHHHHHHHHHHTTCSSE-EEEE-EETTTT-----------EEEEEEEEEECSCS
T ss_pred ccchhhhhhHHHHhhccCcc--cccHHHHHHHHHhhhcccccc-ccch-hhhhcc-----------ccccCceeeccCCC
Confidence 6655444432 134443 355666655554433221 11 1111 221111 22222234457899
Q ss_pred EEEeecccCCCCH
Q psy5743 562 ILLLDEATSALDA 574 (644)
Q Consensus 562 IliLDEaTSaLD~ 574 (644)
|+|++.+..-.|.
T Consensus 199 IVIvEGi~lL~~~ 211 (321)
T 3tqc_A 199 IVILEGLNILQTG 211 (321)
T ss_dssp EEEEECTTTTCCC
T ss_pred EEEEEcccccccc
Confidence 9999988765554
No 189
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.39 E-value=3.3e-07 Score=106.11 Aligned_cols=65 Identities=15% Similarity=0.170 Sum_probs=51.7
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEeecccC-CCCHHHHHHHHHHHHHHcCC-ceEEE-EccCchHHh
Q psy5743 540 IMLSGGQKQRIAIARALIKKSKILLLDEATS-ALDAENEYLVQSAIEKLIEG-KTVLT-IAHRLSTIR 604 (644)
Q Consensus 540 ~~LSGGQkQRiaLARAll~~p~IliLDEaTS-aLD~~~e~~i~~~l~~~~~~-~TvI~-IaHrl~~i~ 604 (644)
.-+|+|+.+|..++++++.+++++|+|||.. .+|.+.-..+.+.+.+..++ +++++ .||..+.+.
T Consensus 189 ~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~ 256 (773)
T 2xau_A 189 KYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQ 256 (773)
T ss_dssp EEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHH
T ss_pred EEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHH
Confidence 3468999999999999999999999999997 89988766667777666544 45555 489877653
No 190
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.38 E-value=1.2e-06 Score=92.31 Aligned_cols=124 Identities=17% Similarity=0.138 Sum_probs=81.1
Q ss_pred CCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCC
Q psy5743 428 GSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVT 507 (644)
Q Consensus 428 G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~ 507 (644)
.-+++++|++|+|||||++.|.|.. + .+++.+....+. .++.++++.. .+
T Consensus 167 ~~~v~lvG~~gvGKSTLin~L~~~~-~-----~~~~~~~~t~~~-----~~~~~~~~~~--------~~----------- 216 (357)
T 2e87_A 167 IPTVVIAGHPNVGKSTLLKALTTAK-P-----EIASYPFTTRGI-----NVGQFEDGYF--------RY----------- 216 (357)
T ss_dssp SCEEEEECSTTSSHHHHHHHHCSSC-C-----EEECCTTCSSCE-----EEEEEEETTE--------EE-----------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC-C-----ccCCCCCeeece-----eEEEEEecCc--------eE-----------
Confidence 3479999999999999999999865 2 223322222111 2333333211 00
Q ss_pred HHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEee-cccCCCCHHHHHHHHHHHHH
Q psy5743 508 KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLD-EATSALDAENEYLVQSAIEK 586 (644)
Q Consensus 508 ~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLD-EaTSaLD~~~e~~i~~~l~~ 586 (644)
.+-+.|.-.+ .....+|+|++|++. +.+...++-++++| ++++++|.+....+.+.+.+
T Consensus 217 ---------------~l~Dt~G~~~----~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~ 276 (357)
T 2e87_A 217 ---------------QIIDTPGLLD----RPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHG 276 (357)
T ss_dssp ---------------EEEECTTTSS----SCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHH
T ss_pred ---------------EEEeCCCccc----cchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHH
Confidence 0112232222 123457999999887 66666777888999 99999999988888888877
Q ss_pred HcCCceEEEEc--cCch
Q psy5743 587 LIEGKTVLTIA--HRLS 601 (644)
Q Consensus 587 ~~~~~TvI~Ia--Hrl~ 601 (644)
...++.+|+|. |++.
T Consensus 277 ~~~~~piilV~NK~Dl~ 293 (357)
T 2e87_A 277 EFKDLPFLVVINKIDVA 293 (357)
T ss_dssp HTTTSCEEEEECCTTTC
T ss_pred hcCCCCEEEEEECcccC
Confidence 66578899998 7764
No 191
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=98.33 E-value=1.2e-06 Score=93.79 Aligned_cols=165 Identities=19% Similarity=0.139 Sum_probs=98.8
Q ss_pred EEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHH-Hhcce
Q psy5743 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMY-LRSQI 478 (644)
Q Consensus 400 I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~-lr~~i 478 (644)
+..++++..|++. . ++++|+ +|++++++|++||||||++..|++.+.+..|+|.+.+.|.......+ ++..
T Consensus 77 ~v~~~L~~~~~~~--~---~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~- 148 (425)
T 2ffh_A 77 TVYEALKEALGGE--A---RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLL- 148 (425)
T ss_dssp HHHHHHHHHTTSS--C---CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHH-
T ss_pred HHHHHHHHHhCCC--c---ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHh-
Confidence 3445666777532 1 578887 89999999999999999999999999999999999988876543322 2110
Q ss_pred EEEecCCCCCcccHHHHHhcCCCCCCCCCHHHH-HHHHHHHhhccchhhhhcCccccccCCCCCCC---hhHHHHHHHHH
Q psy5743 479 GSVSQEPTLFSGTIYENILYGVNDSSSVTKSDI-IHAAKEANAYGFVIDFKNGFDTIVGERGIMLS---GGQKQRIAIAR 554 (644)
Q Consensus 479 ~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~~i-~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LS---GGQkQRiaLAR 554 (644)
.=+.|+-+.... ...+..++ .++++.+. ..+||..|=|.+..++ .-..+...++|
T Consensus 149 ------------~~~~gv~v~~~~-~~~~p~~i~~~~l~~~~--------~~~~DvVIIDTaG~l~~d~~l~~el~~i~~ 207 (425)
T 2ffh_A 149 ------------GEKVGVPVLEVM-DGESPESIRRRVEEKAR--------LEARDLILVDTAGRLQIDEPLMGELARLKE 207 (425)
T ss_dssp ------------HHHHTCCEEECC-TTCCHHHHHHHHHHHHH--------HTTCSEEEEECCCCSSCCHHHHHHHHHHHH
T ss_pred ------------cccCCccEEecC-CCCCHHHHHHHHHHHHH--------HCCCCEEEEcCCCcccccHHHHHHHHHhhh
Confidence 001222211100 11334444 22333221 2467766655444443 23566677888
Q ss_pred HHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEcc
Q psy5743 555 ALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAH 598 (644)
Q Consensus 555 All~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaH 598 (644)
++..++-++++| ++++.|..... +.+.+. -+.+-|++|+
T Consensus 208 ~~~pd~vlLVvD-a~tgq~av~~a---~~f~~~-l~i~GVIlTK 246 (425)
T 2ffh_A 208 VLGPDEVLLVLD-AMTGQEALSVA---RAFDEK-VGVTGLVLTK 246 (425)
T ss_dssp HHCCSEEEEEEE-GGGTTHHHHHH---HHHHHH-TCCCEEEEES
T ss_pred ccCCceEEEEEe-ccchHHHHHHH---HHHHhc-CCceEEEEeC
Confidence 886666677787 55665554321 233322 2567788876
No 192
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=98.30 E-value=9.2e-08 Score=99.62 Aligned_cols=55 Identities=18% Similarity=0.265 Sum_probs=50.0
Q ss_pred CccEEEEEEEEEcCCCCCCcccc--------------ceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCC
Q psy5743 397 KGEIDFNNIRFSYPSRPDAVILN--------------DLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD 453 (644)
Q Consensus 397 ~~~I~~~~vsf~Y~~~~~~~vL~--------------~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~ 453 (644)
.+.|+|+||+|.||. ++.+|+ |+++.+.+||+++|+|++|+|||||++.|.+...
T Consensus 131 ~~ri~Fe~ltp~yP~--er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 131 RNKILFENLTPLHAN--SRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp TTSCCTTTSCEESCC--SBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred cCCceeccccccCCC--CccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence 467999999999995 467899 9999999999999999999999999999999863
No 193
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.30 E-value=8.7e-07 Score=92.68 Aligned_cols=59 Identities=22% Similarity=0.298 Sum_probs=45.1
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEE-EECCccCCCCChHHHhcceEEEecCC
Q psy5743 424 KIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI-LIDGVDIKELDPMYLRSQIGSVSQEP 485 (644)
Q Consensus 424 ~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I-~idg~~i~~~~~~~lr~~i~~V~Q~~ 485 (644)
-+++|+.+.|.||+|||||||+..+++...+..|.+ ++++.+.. + ..+.+++++.+|+.
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~--~-~~ra~rlgv~~~~l 116 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHAL--D-PVYAKNLGVDLKSL 116 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC--C-HHHHHHHTCCGGGC
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc--c-hHHHHHcCCchhhh
Confidence 489999999999999999999999999998887865 67764332 2 22555677666543
No 194
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=98.30 E-value=6e-07 Score=93.31 Aligned_cols=29 Identities=34% Similarity=0.417 Sum_probs=26.3
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 424 KIQSGSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 424 ~i~~G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
-+++|+.+.|.||+|||||||+..++...
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 58999999999999999999999888754
No 195
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.29 E-value=2.1e-08 Score=99.05 Aligned_cols=64 Identities=13% Similarity=0.041 Sum_probs=48.9
Q ss_pred eEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCC------ChHH----HhcceEEEecCCCCCc
Q psy5743 422 SLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKEL------DPMY----LRSQIGSVSQEPTLFS 489 (644)
Q Consensus 422 sl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~------~~~~----lr~~i~~V~Q~~~Lf~ 489 (644)
+.+.++|++++|+|++||||||++++|.|. .|+|.+++.|.... .... .++.+++++|++.++.
T Consensus 14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~ 87 (230)
T 2vp4_A 14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTLT 87 (230)
T ss_dssp BTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred cCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHHHHHH
Confidence 445679999999999999999999999998 79999999886432 1111 2456788888765544
No 196
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.28 E-value=2.4e-06 Score=88.78 Aligned_cols=107 Identities=15% Similarity=0.195 Sum_probs=70.5
Q ss_pred cccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHH
Q psy5743 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENI 496 (644)
Q Consensus 417 vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI 496 (644)
-|+.+.--+++|+.+.|.|++|+|||||+.-++.......+. +.|++=
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~-------------------Vl~fSl------------- 82 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRG-------------------VAVFSL------------- 82 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCE-------------------EEEEES-------------
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCe-------------------EEEEeC-------------
Confidence 356655568999999999999999999998887665432222 333221
Q ss_pred hcCCCCCCCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHccCCCEEEeecccCCCC
Q psy5743 497 LYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALD 573 (644)
Q Consensus 497 ~~g~~~~~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll~~p~IliLDEaTSaLD 573 (644)
+.+.+++..-+..+...=...++-. | .||++++||++.|...+.+++++|.|+|..++|
T Consensus 83 --------Ems~~ql~~Rlls~~~~v~~~~l~~---------g-~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~ 141 (338)
T 4a1f_A 83 --------EMSAEQLALRALSDLTSINMHDLES---------G-RLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE 141 (338)
T ss_dssp --------SSCHHHHHHHHHHHHHCCCHHHHHH---------T-CCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH
T ss_pred --------CCCHHHHHHHHHHHhhCCCHHHHhc---------C-CCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH
Confidence 1445555443322211111222211 2 689999999999999999999999999876544
No 197
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.12 E-value=6.8e-07 Score=86.10 Aligned_cols=49 Identities=24% Similarity=0.180 Sum_probs=42.4
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChH
Q psy5743 424 KIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPM 472 (644)
Q Consensus 424 ~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~ 472 (644)
..++|++++|+|+|||||||+++.|.+.++|..|.|.+.+.|....+..
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~~~ 66 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERA 66 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCCHH
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCCHH
Confidence 3568999999999999999999999999999999999888776655543
No 198
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=98.11 E-value=2.2e-07 Score=89.28 Aligned_cols=34 Identities=35% Similarity=0.444 Sum_probs=28.4
Q ss_pred CCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccC
Q psy5743 428 GSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDI 466 (644)
Q Consensus 428 G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i 466 (644)
...|+|+|++||||||+.+.|... |-.++|..++
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-----g~~~id~d~~ 41 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-----GYPVLDLDAL 41 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-----TCCEEEHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-----CCEEEcccHH
Confidence 457999999999999999999986 7777776443
No 199
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.10 E-value=7.9e-07 Score=83.33 Aligned_cols=39 Identities=26% Similarity=0.359 Sum_probs=34.9
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCC
Q psy5743 426 QSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKE 468 (644)
Q Consensus 426 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~ 468 (644)
.+|+.++|+|++||||||+++.|.+.+ |.+.+|+.++..
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~~ 44 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLHP 44 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGCC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCccccc
Confidence 469999999999999999999999976 899999977653
No 200
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.09 E-value=9.7e-07 Score=88.70 Aligned_cols=59 Identities=19% Similarity=0.181 Sum_probs=49.8
Q ss_pred HHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEEe
Q psy5743 549 RIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLD 613 (644)
Q Consensus 549 RiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl~ 613 (644)
|++|||||..+|++++||||| |.++...+.+ ....++|+++++|..+....+|++++|.
T Consensus 88 ~~~la~aL~~~p~illlDEp~---D~~~~~~~l~---~~~~g~~vl~t~H~~~~~~~~dri~~l~ 146 (261)
T 2eyu_A 88 ADALRAALREDPDVIFVGEMR---DLETVETALR---AAETGHLVFGTLHTNTAIDTIHRIVDIF 146 (261)
T ss_dssp HHHHHHHHHHCCSEEEESCCC---SHHHHHHHHH---HHHTTCEEEEEECCSSHHHHHHHHHHTS
T ss_pred HHHHHHHHhhCCCEEEeCCCC---CHHHHHHHHH---HHccCCEEEEEeCcchHHHHHHHHhhhc
Confidence 899999999999999999999 9887654443 3345899999999999888889887664
No 201
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.08 E-value=1.7e-05 Score=83.95 Aligned_cols=45 Identities=11% Similarity=0.030 Sum_probs=32.8
Q ss_pred cCCCEEEeecccCCCCHHHHHHHHHHHHHHc----CCceEEEEccCchHH
Q psy5743 558 KKSKILLLDEATSALDAENEYLVQSAIEKLI----EGKTVLTIAHRLSTI 603 (644)
Q Consensus 558 ~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~----~~~TvI~IaHrl~~i 603 (644)
.+|.++++||+... |.+....+.+.+.+.. .+.++|++||+++..
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~ 172 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVL 172 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHH
Confidence 45789999999886 8777666666664432 366888899998543
No 202
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.06 E-value=5.3e-06 Score=88.90 Aligned_cols=40 Identities=28% Similarity=0.348 Sum_probs=35.9
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccC
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDI 466 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i 466 (644)
++..++++|++||||||++..|++.+.+..++|.+-+.|.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~ 135 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADV 135 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCc
Confidence 6789999999999999999999999999888998866664
No 203
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.01 E-value=2.5e-05 Score=79.71 Aligned_cols=71 Identities=20% Similarity=0.241 Sum_probs=46.8
Q ss_pred ChhHHHHHHHHHHHccCCCEEEeecccCCCCHHH----------HHHHHHHHHHHc-----CCceEEEEccCchH-----
Q psy5743 543 SGGQKQRIAIARALIKKSKILLLDEATSALDAEN----------EYLVQSAIEKLI-----EGKTVLTIAHRLST----- 602 (644)
Q Consensus 543 SGGQkQRiaLARAll~~p~IliLDEaTSaLD~~~----------e~~i~~~l~~~~-----~~~TvI~IaHrl~~----- 602 (644)
++++++|-.+++|...+|.++++||+.+-.+... ...+...+.... .+..+|..|+++..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 3678888889999889999999999988765421 223344444332 12356677887543
Q ss_pred HhhcCEEEEEe
Q psy5743 603 IRKSNQICVLD 613 (644)
Q Consensus 603 i~~aD~Iivl~ 613 (644)
.+.+|+++.+.
T Consensus 177 ~~R~~~~i~~~ 187 (297)
T 3b9p_A 177 LRRFTKRVYVS 187 (297)
T ss_dssp HHHCCEEEECC
T ss_pred HhhCCeEEEeC
Confidence 35677776664
No 204
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.90 E-value=1.4e-06 Score=82.13 Aligned_cols=41 Identities=32% Similarity=0.454 Sum_probs=34.8
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhccCCCCCc--EEEECCccCC
Q psy5743 426 QSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNG--KILIDGVDIK 467 (644)
Q Consensus 426 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G--~I~idg~~i~ 467 (644)
++|+.++|+|++||||||+++.|.+.++| .| .|.+||..++
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~~ 45 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNIR 45 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHHH
Confidence 47999999999999999999999999876 67 7777876554
No 205
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.89 E-value=3.9e-05 Score=80.20 Aligned_cols=28 Identities=29% Similarity=0.337 Sum_probs=26.1
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhcc
Q psy5743 424 KIQSGSMTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 424 ~i~~G~~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
-+++|+.+.|.||+|||||||+..++..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999999988875
No 206
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.84 E-value=2.8e-06 Score=88.74 Aligned_cols=44 Identities=18% Similarity=0.287 Sum_probs=39.0
Q ss_pred CccccceeEEEeCCCE--EEEECCCCCcHHHHHHHHhccCCCCCcE
Q psy5743 415 AVILNDLSLKIQSGSM--TSVIGSSGSGKSTLAMLLLRLYDPQNGK 458 (644)
Q Consensus 415 ~~vL~~isl~i~~G~~--vaIvG~SGsGKSTLl~lL~g~~~p~~G~ 458 (644)
+.+++.++..++.|+. +.+.||+|+||||+++.+++.+.+..|.
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~ 76 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYS 76 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHH
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCcc
Confidence 4588999999999998 9999999999999999999998766543
No 207
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.82 E-value=7.9e-05 Score=74.22 Aligned_cols=44 Identities=30% Similarity=0.411 Sum_probs=29.6
Q ss_pred ccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCcc
Q psy5743 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVD 465 (644)
Q Consensus 418 L~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~ 465 (644)
++++++..++| +.|+||+|+|||||++.+.+.+... -+.+++.+
T Consensus 37 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~--~~~i~~~~ 80 (257)
T 1lv7_A 37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSD 80 (257)
T ss_dssp C-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC--EEEECSCS
T ss_pred HHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC--EEEEeHHH
Confidence 45555555555 9999999999999999999987532 35555543
No 208
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.81 E-value=1.5e-05 Score=81.66 Aligned_cols=145 Identities=16% Similarity=0.099 Sum_probs=74.9
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEE-CCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCC-CCCC
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILI-DGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGV-NDSS 504 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i-dg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~-~~~~ 504 (644)
++.+|+|+|++|+|||||++.|+|.- +.+ .+.+-. ...+..++++|+..- +.+.+ |.
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~------~~i~s~~~~t-----Tr~~~~gi~~~~~~~--------i~~iDTpG-- 65 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK------ISITSRKAQT-----TRHRIVGIHTEGAYQ--------AIYVDTPG-- 65 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS------EEECCCCSSC-----CSSCEEEEEEETTEE--------EEEESSSS--
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC------ccccCCCCCc-----ceeeEEEEEEECCee--------EEEEECcC--
Confidence 44589999999999999999999963 222 111111 123456778876541 22221 21
Q ss_pred CCCHHHHHHHHHHHhhccchhhhhcCccc--cccCCCCCCChhHHHHHHHHHHHc--cCCCEEEeecccCCCCHHH-HHH
Q psy5743 505 SVTKSDIIHAAKEANAYGFVIDFKNGFDT--IVGERGIMLSGGQKQRIAIARALI--KKSKILLLDEATSALDAEN-EYL 579 (644)
Q Consensus 505 ~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T--~ige~G~~LSGGQkQRiaLARAll--~~p~IliLDEaTSaLD~~~-e~~ 579 (644)
... +-...+...-.......+. ..|- .|-+... +|+|++ .+++++- ..|.|+++ +-+|... ...
T Consensus 66 -~~~-~~~~~l~~~~~~~~~~~l~-~~D~vl~Vvd~~~-~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~ 134 (301)
T 1ega_A 66 -LHM-EEKRAINRLMNKAASSSIG-DVELVIFVVEGTR-WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKAD 134 (301)
T ss_dssp -CCH-HHHHHHHHHHTCCTTSCCC-CEEEEEEEEETTC-CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHH
T ss_pred -CCc-cchhhHHHHHHHHHHHHHh-cCCEEEEEEeCCC-CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHH
Confidence 110 1111111111000001111 1222 1122223 899886 5667665 67888888 5778765 455
Q ss_pred HHHHHHHHcC--C--ceEEEEccCchHH
Q psy5743 580 VQSAIEKLIE--G--KTVLTIAHRLSTI 603 (644)
Q Consensus 580 i~~~l~~~~~--~--~TvI~IaHrl~~i 603 (644)
+.+.+.++.+ + .++.+.||.-.-+
T Consensus 135 ~~~~l~~l~~~~~~~~~i~iSA~~g~~v 162 (301)
T 1ega_A 135 LLPHLQFLASQMNFLDIVPISAETGLNV 162 (301)
T ss_dssp HHHHHHHHHTTSCCSEEEECCTTTTTTH
T ss_pred HHHHHHHHHHhcCcCceEEEECCCCCCH
Confidence 5565655433 2 3555566665444
No 209
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.79 E-value=0.00014 Score=71.71 Aligned_cols=29 Identities=24% Similarity=0.330 Sum_probs=24.4
Q ss_pred EEEEECCCCCcHHHHHHHHhccCCCCCcE
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLYDPQNGK 458 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~~p~~G~ 458 (644)
+|+|+|++|+|||||++.|+|...+.+|.
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~~ 59 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSGT 59 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC--
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccCC
Confidence 68999999999999999999987766553
No 210
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.79 E-value=5.2e-06 Score=96.58 Aligned_cols=32 Identities=16% Similarity=0.254 Sum_probs=29.5
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhccCCC
Q psy5743 423 LKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDP 454 (644)
Q Consensus 423 l~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p 454 (644)
+.+++|+.+.|+||+|||||||+++|.+.+.+
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~ 264 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 46899999999999999999999999998854
No 211
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.78 E-value=4.7e-05 Score=78.58 Aligned_cols=36 Identities=11% Similarity=0.208 Sum_probs=30.3
Q ss_pred ccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhcc
Q psy5743 416 VILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 416 ~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
+-|+++.--+++|+.+.|.|++|+|||||+.-++.-
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~ 91 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKN 91 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 347777666999999999999999999998877753
No 212
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.77 E-value=1.2e-05 Score=84.83 Aligned_cols=31 Identities=16% Similarity=0.304 Sum_probs=27.2
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhccCCCCC
Q psy5743 426 QSGSMTSVIGSSGSGKSTLAMLLLRLYDPQN 456 (644)
Q Consensus 426 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~ 456 (644)
+++..+.|.||+|+|||||++.+.+.+.+..
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~ 73 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKF 73 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 4688999999999999999999999886543
No 213
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.73 E-value=5.3e-06 Score=92.23 Aligned_cols=79 Identities=16% Similarity=0.271 Sum_probs=49.0
Q ss_pred EEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEE
Q psy5743 402 FNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSV 481 (644)
Q Consensus 402 ~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V 481 (644)
++++...|. +..+++++++++ +|+.++|+||+|+|||||++.|.+.+.+..|+|.++|..-..--....++.+|++
T Consensus 86 ~~~vk~~i~---~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~ 161 (543)
T 3m6a_A 86 LEKVKERIL---EYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAM 161 (543)
T ss_dssp CHHHHHHHH---HHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC------------------
T ss_pred HHHHHHHHH---HHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccC
Confidence 344444442 235678888888 8999999999999999999999999999999999888543222222334556666
Q ss_pred ecC
Q psy5743 482 SQE 484 (644)
Q Consensus 482 ~Q~ 484 (644)
+|.
T Consensus 162 ~~~ 164 (543)
T 3m6a_A 162 PGR 164 (543)
T ss_dssp --C
T ss_pred chH
Confidence 654
No 214
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.71 E-value=1.5e-05 Score=74.29 Aligned_cols=33 Identities=24% Similarity=0.327 Sum_probs=28.9
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECC
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDG 463 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg 463 (644)
.|+.++|+|++||||||+++.|.+.+.+ +++|+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~----~~id~ 35 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM----EFYDS 35 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC----EEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC----CEEec
Confidence 5789999999999999999999998854 66765
No 215
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.71 E-value=7.1e-06 Score=79.01 Aligned_cols=69 Identities=23% Similarity=0.190 Sum_probs=45.3
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhccCCC-CCcEE----------EECCccCCCCChHHHhcceEEEecCCCCCcccH
Q psy5743 424 KIQSGSMTSVIGSSGSGKSTLAMLLLRLYDP-QNGKI----------LIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTI 492 (644)
Q Consensus 424 ~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p-~~G~I----------~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTI 492 (644)
...+|..++|+||||||||||++.|...++. ..+.+ .++|.+..-++.+.+...+ .|..+++.+..
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~ 84 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKL---KEGQFLEFDKY 84 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHH---HTTCEEEEEEE
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHHH---HcCCCEEeHHh
Confidence 3568999999999999999999999988742 11211 2366666667777766532 34444444444
Q ss_pred HHH
Q psy5743 493 YEN 495 (644)
Q Consensus 493 reN 495 (644)
.+|
T Consensus 85 ~~~ 87 (204)
T 2qor_A 85 ANN 87 (204)
T ss_dssp TTE
T ss_pred CCC
Confidence 333
No 216
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.70 E-value=4.7e-05 Score=82.34 Aligned_cols=67 Identities=15% Similarity=0.279 Sum_probs=43.6
Q ss_pred cc-CCCEEEeecccCCCCH-HHHHHHHHHHHHHc-CCceEEEEccCch-HHh-hcCEEEE-EeCCeEEEecCh
Q psy5743 557 IK-KSKILLLDEATSALDA-ENEYLVQSAIEKLI-EGKTVLTIAHRLS-TIR-KSNQICV-LDKGKIVEIGSY 623 (644)
Q Consensus 557 l~-~p~IliLDEaTSaLD~-~~e~~i~~~l~~~~-~~~TvI~IaHrl~-~i~-~aD~Iiv-l~~G~ive~Gt~ 623 (644)
++ +|++|++||+..-.+. .+...+...+.++. .++++|+.||+.. .+. ..+++.- ++.|.+++.+.+
T Consensus 191 ~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p 263 (440)
T 2z4s_A 191 YRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPP 263 (440)
T ss_dssp HTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCC
T ss_pred hcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCC
Confidence 45 8999999999887765 56667777776654 4678889999843 222 1222222 455666655544
No 217
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.70 E-value=5.6e-06 Score=80.20 Aligned_cols=44 Identities=36% Similarity=0.360 Sum_probs=39.0
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCc--EEEECCccC
Q psy5743 423 LKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNG--KILIDGVDI 466 (644)
Q Consensus 423 l~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G--~I~idg~~i 466 (644)
+.+++|..++|+|++||||||+++.|.+.+.|..| .+.+||.++
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 45678999999999999999999999999988889 899987443
No 218
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.69 E-value=1.6e-05 Score=86.18 Aligned_cols=201 Identities=16% Similarity=0.128 Sum_probs=102.0
Q ss_pred CEEEEECCCCCcHHHHHHHHhccCC------------CCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcc-cHHHH
Q psy5743 429 SMTSVIGSSGSGKSTLAMLLLRLYD------------PQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSG-TIYEN 495 (644)
Q Consensus 429 ~~vaIvG~SGsGKSTLl~lL~g~~~------------p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~g-TIreN 495 (644)
-++||+|++|+|||||++.|+|... |.+|.+.++|.++.-+|..-+++..++.+|....|.. +..++
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~ 260 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDS 260 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHH
Confidence 3799999999999999999999853 7889999999988777776667666776676666642 33455
Q ss_pred HhcCC------CCCCCCCHH--HHHHHHHHHhhccchhhhhcCccccccCCCCCCChhHHHHHHHHHHHc--cCCCEEEe
Q psy5743 496 ILYGV------NDSSSVTKS--DIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALI--KKSKILLL 565 (644)
Q Consensus 496 I~~g~------~~~~~~~~~--~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~LSGGQkQRiaLARAll--~~p~IliL 565 (644)
+...+ +.....+.+ ++.+.++..+..-.+ .-+..|-. .++. -+--+- .-.+++.+. ...+++
T Consensus 261 i~~ad~vllv~d~~~~~~~~~~~i~~~l~~~~~~~il--v~NK~Dl~-~~~~--~~~~~~-~~~~~~~~~~~~~~~~~-- 332 (439)
T 1mky_A 261 IEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVV--VFNKWDLV-VHRE--KRYDEF-TKLFREKLYFIDYSPLI-- 332 (439)
T ss_dssp HHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEE--EEECGGGS-TTGG--GCHHHH-HHHHHHHCGGGTTSCEE--
T ss_pred HhhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEE--EEECccCC-Cchh--hHHHHH-HHHHHHHhccCCCCcEE--
Confidence 54431 100112332 233333322211000 00112211 0000 011111 113455443 345554
Q ss_pred ecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHH-hh---------cCEEEEEeC-----CeEEEecChhHHhcCC
Q psy5743 566 DEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTI-RK---------SNQICVLDK-----GKIVEIGSYAHLIKNP 630 (644)
Q Consensus 566 DEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i-~~---------aD~Iivl~~-----G~ive~Gt~~eLl~~~ 630 (644)
+|||++.++-..+.+.+.+.....+.-+-||++..+ .. -=+|..+-+ -.++-.++.-+++.
T Consensus 333 --~~SA~~g~gv~~l~~~i~~~~~~~~~~i~t~~ln~~l~~~~~~~~~~~~~ki~y~~q~~~~p~~~~~~~n~~~~~~-- 408 (439)
T 1mky_A 333 --FTSADKGWNIDRMIDAMNLAYASYTTKVPSSAINSALQKVLAFTNLPRGLKIFFGVQVDIKPPTFLFFVNSIEKVK-- 408 (439)
T ss_dssp --ECBTTTTBSHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTTCCCSTTCCEEEEEEEETTTTEEEEEESCSTTCC--
T ss_pred --EEECCCCCCHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHcCCCCCCcEEEEEEecCCCCCEEEEEEcCcccCC--
Confidence 499999988777777776655444433455555432 11 115544432 24455666666663
Q ss_pred CcHHHHHHHhhc
Q psy5743 631 NSMFNKLMKYQT 642 (644)
Q Consensus 631 ~~~y~~l~~~q~ 642 (644)
..|.+.+.++.
T Consensus 409 -~~y~r~l~~~~ 419 (439)
T 1mky_A 409 -NPQKIFLRKLI 419 (439)
T ss_dssp -HHHHHHHHHHH
T ss_pred -HHHHHHHHHHH
Confidence 34777777664
No 219
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.68 E-value=3.7e-05 Score=75.73 Aligned_cols=132 Identities=17% Similarity=0.192 Sum_probs=72.0
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCC-cccHHHHHhcCCCCC
Q psy5743 425 IQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLF-SGTIYENILYGVNDS 503 (644)
Q Consensus 425 i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf-~gTIreNI~~g~~~~ 503 (644)
+..|+.+.++||+||||||++.+.+.......|. ...+.++.|.|... .-++.+|+.-....
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~----------------~~~~~~l~~~p~~~la~q~~~~~~~~~~~- 135 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR----------------AAECNIVVTQPRRISAVSVAERVAFERGE- 135 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC----------------GGGCEEEEEESSHHHHHHHHHHHHHTTTC-
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC----------------CCceEEEEeccchHHHHHHHHHHHHHhcc-
Confidence 4579999999999999999888765432222111 12566777777644 34677777533211
Q ss_pred CCCCHHHHHHHHHHHhhccchhhhhcCccccccCCCCC---CChhHHHHHHHHHHHccCCCEEEeecccC-CCCHHHHHH
Q psy5743 504 SSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIM---LSGGQKQRIAIARALIKKSKILLLDEATS-ALDAENEYL 579 (644)
Q Consensus 504 ~~~~~~~i~~a~~~a~l~~~i~~lp~Gl~T~ige~G~~---LSGGQkQRiaLARAll~~p~IliLDEaTS-aLD~~~e~~ 579 (644)
... ..++. ....+......+.. -+.|.-.+.. +.-+++-+++|+||+-. ++|......
T Consensus 136 -~~~--------~~~g~-------~~~~~~~~~~~~~~Ivv~Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~ 197 (235)
T 3llm_A 136 -EPG--------KSCGY-------SVRFESILPRPHASIMFCTVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLV 197 (235)
T ss_dssp -CTT--------SSEEE-------EETTEEECCCSSSEEEEEEHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHH
T ss_pred -ccC--------ceEEE-------eechhhccCCCCCeEEEECHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHH
Confidence 000 00000 00011111111111 2446655553 44689999999999976 477665544
Q ss_pred HHHHHHHHcCCc
Q psy5743 580 VQSAIEKLIEGK 591 (644)
Q Consensus 580 i~~~l~~~~~~~ 591 (644)
..+.+....++.
T Consensus 198 ~l~~i~~~~~~~ 209 (235)
T 3llm_A 198 VLRDVVQAYPEV 209 (235)
T ss_dssp HHHHHHHHCTTS
T ss_pred HHHHHHhhCCCC
Confidence 445554444443
No 220
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.67 E-value=1.4e-05 Score=78.47 Aligned_cols=45 Identities=20% Similarity=0.274 Sum_probs=33.3
Q ss_pred ccceeEEEe---CCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECC
Q psy5743 418 LNDLSLKIQ---SGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDG 463 (644)
Q Consensus 418 L~~isl~i~---~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg 463 (644)
|.++|++++ +|..++|.|++||||||+++.|...+.+ .+.+....
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~~ 60 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMTR 60 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEEC
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceeec
Confidence 455555555 8999999999999999999999999988 67776544
No 221
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.66 E-value=1e-05 Score=77.40 Aligned_cols=57 Identities=25% Similarity=0.380 Sum_probs=38.6
Q ss_pred EEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhcc----C----CCCCcEEEECCcc
Q psy5743 406 RFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRL----Y----DPQNGKILIDGVD 465 (644)
Q Consensus 406 sf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~----~----~p~~G~I~idg~~ 465 (644)
+|+|++ -..+++++|++.+++ +++++|++|+|||||++.+.+- + .++.+.+.++|.+
T Consensus 6 ~~~~~~--~~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~ 70 (198)
T 1f6b_A 6 DWIYSG--FSSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMT 70 (198)
T ss_dssp ---------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEE
T ss_pred HHHHHH--HHHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEE
Confidence 567775 346899999998887 5899999999999999999872 2 2344566666543
No 222
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.62 E-value=7.4e-06 Score=85.62 Aligned_cols=53 Identities=23% Similarity=0.203 Sum_probs=46.7
Q ss_pred ccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCC
Q psy5743 416 VILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKE 468 (644)
Q Consensus 416 ~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~ 468 (644)
.+++++++++++|..++|+|++|+|||||++.|++.+.+..|+|.+-+.|...
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~ 96 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSS 96 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCc
Confidence 57889999999999999999999999999999999998888888877666543
No 223
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.62 E-value=3.8e-06 Score=82.60 Aligned_cols=71 Identities=17% Similarity=0.158 Sum_probs=48.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHh---ccCCCCCcEEE--------ECCccCCCCC-hHHHhcceEEEe------cCCCCC
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLL---RLYDPQNGKIL--------IDGVDIKELD-PMYLRSQIGSVS------QEPTLF 488 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~---g~~~p~~G~I~--------idg~~i~~~~-~~~lr~~i~~V~------Q~~~Lf 488 (644)
.+-.++|+|||||||||+.+.|. |+...+.|.++ -+|.+..+.. ...+.+.+.+.. |+.+|+
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~v~l~ 87 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAGADLTDPAAIEKAAADAEIGVGSDPDVDAAFLA 87 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEECCCTTSCCEEET
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHcCCCchhhHHHHHHHHhCCEEEeecCCCcEEEEC
Confidence 34589999999999999999998 54445566652 3466655543 445666666666 455666
Q ss_pred cccHHHHHh
Q psy5743 489 SGTIYENIL 497 (644)
Q Consensus 489 ~gTIreNI~ 497 (644)
...|.+||.
T Consensus 88 g~~v~~~ir 96 (233)
T 3r20_A 88 GEDVSSEIR 96 (233)
T ss_dssp TEECTTGGG
T ss_pred Ceehhhhhc
Confidence 666766653
No 224
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.58 E-value=0.0001 Score=75.54 Aligned_cols=39 Identities=23% Similarity=0.303 Sum_probs=31.4
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECC
Q psy5743 423 LKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDG 463 (644)
Q Consensus 423 l~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg 463 (644)
+.++++..+.|.||+|+|||||++.+.+... .+-+.+++
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~--~~~i~v~~ 82 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKG 82 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHTT--CEEEEECH
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHhC--CCEEEEEh
Confidence 4568899999999999999999999999874 34444443
No 225
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.54 E-value=2.2e-05 Score=82.19 Aligned_cols=44 Identities=20% Similarity=0.258 Sum_probs=37.8
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCC
Q psy5743 426 QSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKEL 469 (644)
Q Consensus 426 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~ 469 (644)
+++.+|+|+|++|||||||++.|.|.+.|.+|+|.|.+.|....
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~ 115 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSC 115 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC---
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCC
Confidence 46789999999999999999999999999999999988776543
No 226
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.50 E-value=0.00037 Score=72.91 Aligned_cols=46 Identities=24% Similarity=0.390 Sum_probs=32.8
Q ss_pred cccceeEE---EeCCCEEEEECCCCCcHHHHHHHHhccCCCCC-cEEEECC
Q psy5743 417 ILNDLSLK---IQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQN-GKILIDG 463 (644)
Q Consensus 417 vL~~isl~---i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~-G~I~idg 463 (644)
-|+.+ +. +++|+.+.|.|++|||||||+.-++....... ..++++.
T Consensus 50 ~LD~~-Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~ 99 (356)
T 1u94_A 50 SLDIA-LGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 99 (356)
T ss_dssp HHHHH-TSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred HHHHH-hccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 45554 33 88999999999999999999988776543322 2344444
No 227
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.49 E-value=0.00034 Score=70.56 Aligned_cols=28 Identities=25% Similarity=0.293 Sum_probs=25.3
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 425 IQSGSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 425 i~~G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
++++..+.|.||+|+|||||++.+.+.+
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4677889999999999999999999876
No 228
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.47 E-value=8.6e-05 Score=76.75 Aligned_cols=29 Identities=21% Similarity=0.117 Sum_probs=25.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhccCCCC
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRLYDPQ 455 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~~~p~ 455 (644)
++..+.|.||+|+|||||++.+.+.+.+.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~ 64 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKR 64 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 45789999999999999999999987543
No 229
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.44 E-value=6.9e-05 Score=70.96 Aligned_cols=33 Identities=30% Similarity=0.427 Sum_probs=21.0
Q ss_pred cccceeEEEeCCCEEEEECCCCCcHHHHHHHHhc
Q psy5743 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLR 450 (644)
Q Consensus 417 vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g 450 (644)
+++++|++.++. +++++|++|+|||||++.+.+
T Consensus 13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp -----------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 678999988777 889999999999999999998
No 230
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.44 E-value=0.00015 Score=69.19 Aligned_cols=27 Identities=22% Similarity=0.182 Sum_probs=24.2
Q ss_pred CEEEEECCCCCcHHHHHHHHhccCCCC
Q psy5743 429 SMTSVIGSSGSGKSTLAMLLLRLYDPQ 455 (644)
Q Consensus 429 ~~vaIvG~SGsGKSTLl~lL~g~~~p~ 455 (644)
..+.|.||+|+|||||++.+.......
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~ 81 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKR 81 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 789999999999999999999877544
No 231
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=97.43 E-value=0.00019 Score=71.27 Aligned_cols=59 Identities=10% Similarity=0.071 Sum_probs=38.2
Q ss_pred ChhHHHHHHHHHHHc---cCCCEEEeecccCCCCHHHHHHHHHHHHHHc----CCceEEEEccCchH
Q psy5743 543 SGGQKQRIAIARALI---KKSKILLLDEATSALDAENEYLVQSAIEKLI----EGKTVLTIAHRLST 602 (644)
Q Consensus 543 SGGQkQRiaLARAll---~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~----~~~TvI~IaHrl~~ 602 (644)
+.|++.+-.+.|+++ ++++++|+--..+.++. .+..+.+.+.+.+ .++++|+++|..+.
T Consensus 86 ~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~-~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl 151 (247)
T 3lxw_A 86 SKTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTA-QDQQAVRQVRDMFGEDVLKWMVIVFTRKEDL 151 (247)
T ss_dssp HHHSTTSHHHHHHHHHHTTCCSEEEEEEETTBCCH-HHHHHHHHHHHHHCGGGGGGEEEEEECGGGG
T ss_pred CcHHHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCH-HHHHHHHHHHHHhChhhhccEEEEEEchHhc
Confidence 345666677788874 88988776544445544 4445555565543 26799999997654
No 232
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.42 E-value=7.4e-06 Score=78.40 Aligned_cols=67 Identities=19% Similarity=0.317 Sum_probs=39.0
Q ss_pred EEEEECCCCCcHHHHHHHHhccC------CCCCcEEEECCccCCCCChHH-------------HhcceEEEecCCCCCcc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLY------DPQNGKILIDGVDIKELDPMY-------------LRSQIGSVSQEPTLFSG 490 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~------~p~~G~I~idg~~i~~~~~~~-------------lr~~i~~V~Q~~~Lf~g 490 (644)
.++|+|++||||||+++.|...+ +|..|...++.. .. +... ++.....+.|+..+++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~e~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~r~~~~~~~~~~~~vi~d~ 78 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFKEPVEENPYFEQY-YK--DLKKTVFKMQIYMLTARSKQLKQAKNLENIIFDR 78 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEECCCGGGCTTHHHH-TT--CHHHHHHHHHHHHHHHHHHHHC------CEEEES
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEcccccccHHHHHH-Hh--CccccchhHHHHHHHHHHHHHHHhhccCCEEEEe
Confidence 68999999999999999999843 443332222110 00 1111 23334566777788898
Q ss_pred cHHHHHhcC
Q psy5743 491 TIYENILYG 499 (644)
Q Consensus 491 TIreNI~~g 499 (644)
++.+|+.+.
T Consensus 79 ~~~~~~~~~ 87 (205)
T 2jaq_A 79 TLLEDPIFM 87 (205)
T ss_dssp CTTTHHHHH
T ss_pred ccchhHHHH
Confidence 888888764
No 233
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.39 E-value=0.00055 Score=69.88 Aligned_cols=32 Identities=22% Similarity=0.210 Sum_probs=27.9
Q ss_pred CCEEEEECCCCCcHHHHHHHHhccCCCCCcEE
Q psy5743 428 GSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459 (644)
Q Consensus 428 G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I 459 (644)
...+.++||+|+||||+++.+.+.+.+..|.+
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 45799999999999999999999998776644
No 234
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.37 E-value=9e-05 Score=68.98 Aligned_cols=27 Identities=26% Similarity=0.288 Sum_probs=23.7
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 426 QSGSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 426 ~~G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
++|.+++|+|++|+|||||++.+.|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 478899999999999999999999865
No 235
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.36 E-value=8e-05 Score=72.77 Aligned_cols=28 Identities=14% Similarity=0.078 Sum_probs=25.3
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhccCCC
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRLYDP 454 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~~~p 454 (644)
++..+.|+||+|+|||||++.+...+..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~ 78 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANE 78 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999999987654
No 236
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.29 E-value=0.0007 Score=73.20 Aligned_cols=38 Identities=18% Similarity=0.265 Sum_probs=31.5
Q ss_pred cccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCC
Q psy5743 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDP 454 (644)
Q Consensus 417 vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p 454 (644)
-|+.+.--+++|+.+.|.|++|+|||||+.-++.-...
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~ 226 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAAL 226 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 46666655899999999999999999999888776543
No 237
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=97.28 E-value=0.00018 Score=78.10 Aligned_cols=59 Identities=10% Similarity=0.044 Sum_probs=39.9
Q ss_pred hhHHHHHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHh
Q psy5743 544 GGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIR 604 (644)
Q Consensus 544 GGQkQRiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~ 604 (644)
+.|++-...++..+++++++|+....+.-.......+.+.+++ .++.+|+|.+..+...
T Consensus 87 ~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~--~~~pvilV~NK~D~~~ 145 (456)
T 4dcu_A 87 PFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYR--TKKPVVLAVNKLDNTE 145 (456)
T ss_dssp CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTT--CCSCEEEEEECC----
T ss_pred HHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHH--cCCCEEEEEECccchh
Confidence 4588888999999999998887655444333344456666654 4788999999887653
No 238
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.27 E-value=4.8e-05 Score=77.73 Aligned_cols=63 Identities=17% Similarity=0.235 Sum_probs=49.9
Q ss_pred EEEEEEEEcCCCCCCccccc-eeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCC
Q psy5743 401 DFNNIRFSYPSRPDAVILND-LSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKEL 469 (644)
Q Consensus 401 ~~~~vsf~Y~~~~~~~vL~~-isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~ 469 (644)
..++++..|++.. ++ ++++.+ |++++++|++|+||||++..|++.+.+..|+|.+.+.|...-
T Consensus 76 ~~~~l~~~~~~~~-----~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~ 139 (297)
T 1j8m_F 76 VYDELSNLFGGDK-----EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRP 139 (297)
T ss_dssp HHHHHHHHTTCSC-----CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSS
T ss_pred HHHHHHHHhcccc-----ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCH
Confidence 3445555564321 45 777776 999999999999999999999999999999999988887653
No 239
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.27 E-value=0.00012 Score=69.09 Aligned_cols=32 Identities=22% Similarity=0.367 Sum_probs=27.0
Q ss_pred ceeEEEeCCCEEEEECCCCCcHHHHHHHHhcc
Q psy5743 420 DLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 420 ~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
++|++.++|..++|+|++||||||+.+.|...
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888999999999999999999999999987
No 240
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.21 E-value=7.2e-05 Score=77.95 Aligned_cols=43 Identities=19% Similarity=0.305 Sum_probs=33.1
Q ss_pred CCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchH
Q psy5743 559 KSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLST 602 (644)
Q Consensus 559 ~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~ 602 (644)
+++|+++|| ...++.+....+.+.+.+...+..+|++++++..
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~ 175 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSGVTRFCLICNYVTR 175 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCCCceEEEEeCchhh
Confidence 567999999 6778888888888888876555567777777653
No 241
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.20 E-value=0.00011 Score=70.24 Aligned_cols=35 Identities=31% Similarity=0.458 Sum_probs=29.3
Q ss_pred CCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccC
Q psy5743 428 GSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDI 466 (644)
Q Consensus 428 G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i 466 (644)
...++|+|++||||||+++.|.+.+ |...+++.++
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~d~~ 52 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEGDAL 52 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEGGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeCCcC
Confidence 5689999999999999999999887 5667766443
No 242
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.19 E-value=0.00011 Score=73.15 Aligned_cols=43 Identities=21% Similarity=0.371 Sum_probs=35.3
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCC
Q psy5743 424 KIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKE 468 (644)
Q Consensus 424 ~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~ 468 (644)
..++|..+.|+|++||||||+.+.|.+.+. .|.+.+||..++.
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~r~ 70 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSFRS 70 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGGGT
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHHHH
Confidence 456788999999999999999999999885 3678888865543
No 243
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.15 E-value=0.00011 Score=69.26 Aligned_cols=40 Identities=33% Similarity=0.532 Sum_probs=34.0
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEE-EECC
Q psy5743 424 KIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI-LIDG 463 (644)
Q Consensus 424 ~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I-~idg 463 (644)
..++|..+.|+|++||||||+++.|.+.+.+..|.+ .+|+
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~ 49 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDG 49 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeH
Confidence 345899999999999999999999999998777765 4554
No 244
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.13 E-value=0.0015 Score=58.78 Aligned_cols=30 Identities=20% Similarity=0.243 Sum_probs=25.3
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhccCCCC
Q psy5743 426 QSGSMTSVIGSSGSGKSTLAMLLLRLYDPQ 455 (644)
Q Consensus 426 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~ 455 (644)
+.+.-|.|.||+|+|||++++.+.......
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~~~ 51 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFGRNA 51 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSSTTT
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhCCcc
Confidence 456679999999999999999998876543
No 245
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.13 E-value=0.00026 Score=64.48 Aligned_cols=30 Identities=37% Similarity=0.624 Sum_probs=24.0
Q ss_pred ceeEEEeCCCEEEEECCCCCcHHHHHHHHhc
Q psy5743 420 DLSLKIQSGSMTSVIGSSGSGKSTLAMLLLR 450 (644)
Q Consensus 420 ~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g 450 (644)
+..+++.+| ..+|+||+||||||++.+|.-
T Consensus 16 ~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 344555554 899999999999999999873
No 246
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.13 E-value=0.00017 Score=70.17 Aligned_cols=45 Identities=18% Similarity=0.182 Sum_probs=33.2
Q ss_pred cCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHH
Q psy5743 558 KKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTI 603 (644)
Q Consensus 558 ~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i 603 (644)
.+|.++++||+-. +|.+....+.+.+.+...+..+|++|++...+
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~ 169 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 169 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence 3578999999866 78777777777776654566788888876543
No 247
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.12 E-value=0.00019 Score=67.20 Aligned_cols=39 Identities=26% Similarity=0.248 Sum_probs=30.8
Q ss_pred CCEEEEECCCCCcHHHHHHHHhccCCCC---CcEEEECCccC
Q psy5743 428 GSMTSVIGSSGSGKSTLAMLLLRLYDPQ---NGKILIDGVDI 466 (644)
Q Consensus 428 G~~vaIvG~SGsGKSTLl~lL~g~~~p~---~G~I~idg~~i 466 (644)
-..++|+|+||||||||++.|++.+.+. -|.|..++.+.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~~ 47 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDM 47 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC--
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCcc
Confidence 4689999999999999999999987543 37777777553
No 248
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.11 E-value=0.0002 Score=67.80 Aligned_cols=63 Identities=30% Similarity=0.452 Sum_probs=44.8
Q ss_pred EEEECCCCCcHHHHHHHHhccC-------------CCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHh
Q psy5743 431 TSVIGSSGSGKSTLAMLLLRLY-------------DPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENIL 497 (644)
Q Consensus 431 vaIvG~SGsGKSTLl~lL~g~~-------------~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~ 497 (644)
+.|+||||||||||++.|+..+ +|-.|++ ||+|.--++.++..+.+ .++-++-.+.+..| .
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~--~G~dY~Fvs~~eF~~~i---~~g~flE~~~~~g~-~ 77 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV--NGKDYNFVSVDEFKSMI---KNNEFIEWAQFSGN-Y 77 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCC--BTTTBEECCHHHHHHHH---HTTCEEEEEEETTE-E
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCc--CCceeEeecHHHHHHHH---HcCCEEEEEEEcCc-e
Confidence 7899999999999999998654 3556765 89888888888776643 34444545554444 3
Q ss_pred cC
Q psy5743 498 YG 499 (644)
Q Consensus 498 ~g 499 (644)
||
T Consensus 78 YG 79 (186)
T 1ex7_A 78 YG 79 (186)
T ss_dssp EE
T ss_pred ee
Confidence 55
No 249
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.09 E-value=5.4e-05 Score=79.65 Aligned_cols=58 Identities=24% Similarity=0.239 Sum_probs=36.9
Q ss_pred CccEEEEEEEEEcCCCCCCccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECC
Q psy5743 397 KGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDG 463 (644)
Q Consensus 397 ~~~I~~~~vsf~Y~~~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg 463 (644)
.+.|.++|++..|.. +.++++++|+| +|+|++|+|||||++.|++.-.+..|.+..++
T Consensus 15 ~~~v~~~~l~~~~~~---k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~ 72 (361)
T 2qag_A 15 PGYVGFANLPNQVHR---KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVIPGAA 72 (361)
T ss_dssp ------CCHHHHHHT---HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC----------
T ss_pred CceEEeccchHHhCC---eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCcccCCC
Confidence 456899999988853 46789999976 99999999999999999988666666554443
No 250
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.09 E-value=0.00097 Score=68.76 Aligned_cols=28 Identities=29% Similarity=0.286 Sum_probs=25.2
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhcc
Q psy5743 424 KIQSGSMTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 424 ~i~~G~~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
-+++|+.+.|.|++|||||||+.-++.-
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999999887753
No 251
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=97.09 E-value=0.12 Score=57.44 Aligned_cols=95 Identities=6% Similarity=0.024 Sum_probs=55.8
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHH-HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 72 LAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMK-EKMTSLS---LLLMLVFVVGACCNFGRVYLMNV 147 (644)
Q Consensus 72 ~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~-~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 147 (644)
.+.++.+.....++++++..++..+.+.+...++..++..-..... .....+. ..+++..++..+...+..+....
T Consensus 4 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (578)
T 4a82_A 4 RYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIRQY 83 (578)
T ss_dssp HHHHHHGGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566667777777777788888888888877642110000 0022221 22223333334455556677777
Q ss_pred HHHHHHHHHHHHHHHHHHc
Q psy5743 148 SAQSITKKLRERLFGSIIS 166 (644)
Q Consensus 148 ~~~~~~~~lr~~~~~~ll~ 166 (644)
...++..++..++-.++++
T Consensus 84 ~~~~~~~~~~~~lr~~l~~ 102 (578)
T 4a82_A 84 LAQWTSNKILYDIRKKLYN 102 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7777888888888777664
No 252
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.05 E-value=0.00025 Score=74.86 Aligned_cols=41 Identities=20% Similarity=0.357 Sum_probs=35.2
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhcc-----------CCCCCcEEEECCc
Q psy5743 424 KIQSGSMTSVIGSSGSGKSTLAMLLLRL-----------YDPQNGKILIDGV 464 (644)
Q Consensus 424 ~i~~G~~vaIvG~SGsGKSTLl~lL~g~-----------~~p~~G~I~idg~ 464 (644)
.+..|.+++|||++|+|||||++.|.|. .+|+.|.+.++|.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 4568899999999999999999999998 7889999988774
No 253
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.99 E-value=0.004 Score=61.62 Aligned_cols=27 Identities=22% Similarity=0.272 Sum_probs=23.2
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 426 QSGSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 426 ~~G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
++..-+.|.||+|+||||+++.+...+
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 345568999999999999999999865
No 254
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.97 E-value=0.00056 Score=62.86 Aligned_cols=24 Identities=29% Similarity=0.249 Sum_probs=22.0
Q ss_pred EEEEECCCCCcHHHHHHHHhccCC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLYD 453 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~~ 453 (644)
+++|+|++|+|||||++.+.|...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 699999999999999999999653
No 255
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.97 E-value=0.0031 Score=66.04 Aligned_cols=27 Identities=15% Similarity=0.228 Sum_probs=24.4
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 426 QSGSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 426 ~~G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
++...+.|.||+|+|||||++.+....
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 467789999999999999999999876
No 256
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.92 E-value=0.001 Score=64.71 Aligned_cols=51 Identities=18% Similarity=0.202 Sum_probs=35.8
Q ss_pred CCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccC-----------chHHhhcCEEEEEe
Q psy5743 559 KSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHR-----------LSTIRKSNQICVLD 613 (644)
Q Consensus 559 ~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHr-----------l~~i~~aD~Iivl~ 613 (644)
+++++++||+-- ++.+.- .....+.+. +.++|++.|+ ...+..||.|.-|.
T Consensus 89 ~~dvViIDEaQ~-l~~~~v-e~l~~L~~~--gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDRIC-EVANILAEN--GFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCTHHH-HHHHHHHHT--TCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcHHHH-HHHHHHHhC--CCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999964 665422 223344443 8899999992 45578899999874
No 257
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.90 E-value=1.7e-05 Score=83.63 Aligned_cols=86 Identities=13% Similarity=0.084 Sum_probs=65.3
Q ss_pred CCChhHHHHHHHHHHHc-cCCCEEEeec---cc------CCCCHHHHHHHHHHHHHHcC--CceEEEEccCchHHhhcCE
Q psy5743 541 MLSGGQKQRIAIARALI-KKSKILLLDE---AT------SALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIRKSNQ 608 (644)
Q Consensus 541 ~LSGGQkQRiaLARAll-~~p~IliLDE---aT------SaLD~~~e~~i~~~l~~~~~--~~TvI~IaHrl~~i~~aD~ 608 (644)
.+|+|++||..+++++. .+|++++||| |+ +++|......+.+.|.++.+ +.|+++++|--..-+.+|+
T Consensus 258 ~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~~~~r~~~~ 337 (365)
T 1lw7_A 258 CIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPSYLDRYNQV 337 (365)
T ss_dssp HHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECSSHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHH
Confidence 45778889999999885 5999999999 55 68999999999999977655 7899999987555566788
Q ss_pred EEEEeCCeEEEecChhHHhc
Q psy5743 609 ICVLDKGKIVEIGSYAHLIK 628 (644)
Q Consensus 609 Iivl~~G~ive~Gt~~eLl~ 628 (644)
+..+++ +++.|+.+||.+
T Consensus 338 i~~i~~--~l~~~~~~~~~~ 355 (365)
T 1lw7_A 338 KAVIEK--VLNEEEISELQN 355 (365)
T ss_dssp HHHHHH--HTSCCCCSSCCC
T ss_pred HHHHHH--HhcccchhHhhc
Confidence 877765 667778888753
No 258
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.90 E-value=0.0029 Score=66.17 Aligned_cols=40 Identities=25% Similarity=0.449 Sum_probs=32.2
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCcc
Q psy5743 426 QSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVD 465 (644)
Q Consensus 426 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~ 465 (644)
.+|..+.|.||+|+||||+++.+...+.....-+.+++..
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~ 107 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSE 107 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchh
Confidence 4678999999999999999999999887554556666544
No 259
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.89 E-value=0.00044 Score=64.72 Aligned_cols=23 Identities=30% Similarity=0.294 Sum_probs=21.1
Q ss_pred CEEEEECCCCCcHHHHHHHHhcc
Q psy5743 429 SMTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 429 ~~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
-+++++|++|+|||||++.+.|.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36999999999999999999984
No 260
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.89 E-value=0.0017 Score=68.19 Aligned_cols=29 Identities=31% Similarity=0.502 Sum_probs=25.5
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhccCCC
Q psy5743 426 QSGSMTSVIGSSGSGKSTLAMLLLRLYDP 454 (644)
Q Consensus 426 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~p 454 (644)
..+..+.|.||+|+|||||++.+......
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~~ 70 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLEA 70 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 56788999999999999999999987743
No 261
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.84 E-value=0.00053 Score=64.28 Aligned_cols=26 Identities=31% Similarity=0.537 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHhccCCCC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLYDPQ 455 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~~p~ 455 (644)
+++|+|++|+|||||++.+.+...+.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~~ 29 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKSD 29 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC----
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcc
Confidence 68999999999999999999975443
No 262
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.82 E-value=0.00058 Score=65.23 Aligned_cols=21 Identities=33% Similarity=0.515 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLR 450 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g 450 (644)
+++|+|++||||||+++.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999999
No 263
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.82 E-value=0.00061 Score=63.38 Aligned_cols=27 Identities=26% Similarity=0.319 Sum_probs=24.4
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhccCC
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRLYD 453 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~~~ 453 (644)
.|..+.|+|+|||||||+.+.|...+.
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 367899999999999999999998874
No 264
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.81 E-value=0.0074 Score=64.56 Aligned_cols=35 Identities=26% Similarity=0.413 Sum_probs=28.7
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEE
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILI 461 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i 461 (644)
++..++++|++|+||||++.-|+..+....-+|.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVll 133 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGV 133 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 56799999999999999999999888765445543
No 265
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.76 E-value=0.0044 Score=66.80 Aligned_cols=35 Identities=11% Similarity=0.238 Sum_probs=27.6
Q ss_pred ccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 418 L~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
|+.+.--+++|+.+.|.|++|+|||||+--++.-.
T Consensus 187 LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~ 221 (444)
T 3bgw_A 187 LDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNM 221 (444)
T ss_dssp HHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred HHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHH
Confidence 44444358999999999999999999977666543
No 266
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.75 E-value=1 Score=50.08 Aligned_cols=88 Identities=8% Similarity=-0.031 Sum_probs=37.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 75 SEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVYLMNVSAQSITK 154 (644)
Q Consensus 75 ~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (644)
++.+.....++++++..++..+......+++..++.... ....... ...+.+..++..++..+..+.......+...
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (587)
T 3qf4_A 16 RYLKPYWIFAVLAPLFMVVEVICDLSQPTLLARIVDEGI--ARGDFSL-VLKTGILMLIVALIGAVGGIGCTVFASYASQ 92 (587)
T ss_dssp GGTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--TTTCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--ccCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444445444555555555554442110 0111111 1222222333333444444555555555555
Q ss_pred HHHHHHHHHHH
Q psy5743 155 KLRERLFGSII 165 (644)
Q Consensus 155 ~lr~~~~~~ll 165 (644)
++..++-.+++
T Consensus 93 ~~~~~lr~~l~ 103 (587)
T 3qf4_A 93 NFGADLRRDLF 103 (587)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555443
No 267
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.75 E-value=0.0084 Score=61.70 Aligned_cols=28 Identities=25% Similarity=0.183 Sum_probs=24.9
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 425 IQSGSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 425 i~~G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
.+|+.-+.|.||+|+|||||++.+....
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 42 RTPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCccHHHHHHHHHHHc
Confidence 3466789999999999999999999876
No 268
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.69 E-value=0.00074 Score=71.70 Aligned_cols=58 Identities=14% Similarity=0.319 Sum_probs=43.9
Q ss_pred cCCCEEEeecccCCCC---HHHHHHHHHHHHHHcC-CceEEEEccCchHH-------------hhcCEEEEEeCC
Q psy5743 558 KKSKILLLDEATSALD---AENEYLVQSAIEKLIE-GKTVLTIAHRLSTI-------------RKSNQICVLDKG 615 (644)
Q Consensus 558 ~~p~IliLDEaTSaLD---~~~e~~i~~~l~~~~~-~~TvI~IaHrl~~i-------------~~aD~Iivl~~G 615 (644)
..|.++++||+=.-++ +.....+.+.+++.++ +..++++||+++-+ .+|+..+++...
T Consensus 261 ~~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d~~~~~~~~~~~~il~n~~~~i~l~~~ 335 (392)
T 4ag6_A 261 RERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVIDFLAPEVQRYGQALLDNPTYKLLLAQG 335 (392)
T ss_dssp CTTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGGGGGSTTTHHHHHHHHHSCSEEEECSCC
T ss_pred CccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHHHhhChhhHHHHHHHHHhhhhhheeCCC
Confidence 3578999999998885 4566677777766544 77899999999755 467777887654
No 269
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.69 E-value=0.012 Score=59.73 Aligned_cols=27 Identities=30% Similarity=0.454 Sum_probs=23.4
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhccCC
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRLYD 453 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~~~ 453 (644)
++..+.|.||+|+||||+++.+...+.
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l~ 92 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLLH 92 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 566799999999999999998887763
No 270
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.68 E-value=0.00025 Score=73.58 Aligned_cols=38 Identities=34% Similarity=0.461 Sum_probs=34.3
Q ss_pred ccccceeEEEeCCCE--EEEECCCCCcHHHHHHHHhccCC
Q psy5743 416 VILNDLSLKIQSGSM--TSVIGSSGSGKSTLAMLLLRLYD 453 (644)
Q Consensus 416 ~vL~~isl~i~~G~~--vaIvG~SGsGKSTLl~lL~g~~~ 453 (644)
.+++++++.+++|+. ++|+|++||||||+.++|.+.+.
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 478889999999999 99999999999999999998653
No 271
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.68 E-value=0.0017 Score=66.00 Aligned_cols=27 Identities=26% Similarity=0.378 Sum_probs=23.2
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 426 QSGSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 426 ~~G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
++...+.+.||+|+|||+|++.++..+
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 344568889999999999999999877
No 272
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.66 E-value=0.0014 Score=61.51 Aligned_cols=36 Identities=33% Similarity=0.588 Sum_probs=28.0
Q ss_pred EEEEECCCCCcHHHHHHHHhc-c----CCCCCc----EEEECCcc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLR-L----YDPQNG----KILIDGVD 465 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g-~----~~p~~G----~I~idg~~ 465 (644)
+++|+|++|+|||||++.+.+ . +.|+.| .+.++|..
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 66 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQS 66 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEE
Confidence 699999999999999975554 3 677777 66677643
No 273
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.66 E-value=0.0066 Score=64.91 Aligned_cols=30 Identities=23% Similarity=0.293 Sum_probs=26.6
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhccCC
Q psy5743 424 KIQSGSMTSVIGSSGSGKSTLAMLLLRLYD 453 (644)
Q Consensus 424 ~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~ 453 (644)
-++|..-+.+.||+|||||+|++.+++...
T Consensus 211 g~~~prGvLL~GPPGtGKTllAkAiA~e~~ 240 (437)
T 4b4t_L 211 GIKPPKGVLLYGPPGTGKTLLAKAVAATIG 240 (437)
T ss_dssp CCCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 467778899999999999999999999764
No 274
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.62 E-value=0.00079 Score=63.12 Aligned_cols=27 Identities=30% Similarity=0.416 Sum_probs=23.7
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 426 QSGSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 426 ~~G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
.+|..++|+|++||||||+.+.|...+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999998654
No 275
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.61 E-value=0.0003 Score=67.65 Aligned_cols=26 Identities=27% Similarity=0.440 Sum_probs=23.7
Q ss_pred EEEEECCCCCcHHHHHHHHhccCCCC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLYDPQ 455 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~~p~ 455 (644)
.++|+|++||||||+++.|.+.+.+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~ 27 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAA 27 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 68999999999999999999988654
No 276
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.60 E-value=0.00079 Score=62.05 Aligned_cols=25 Identities=24% Similarity=0.175 Sum_probs=22.0
Q ss_pred CEEEEECCCCCcHHHHHHHHhccCC
Q psy5743 429 SMTSVIGSSGSGKSTLAMLLLRLYD 453 (644)
Q Consensus 429 ~~vaIvG~SGsGKSTLl~lL~g~~~ 453 (644)
..++|+|++||||||+++.|...+.
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999987753
No 277
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.57 E-value=0.0011 Score=67.12 Aligned_cols=35 Identities=29% Similarity=0.377 Sum_probs=29.4
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECC
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDG 463 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg 463 (644)
+|..+.|+|+|||||||+.+.|...++ .|.+.|++
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~ 66 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN 66 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEec
Confidence 467899999999999999999988764 36677776
No 278
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.55 E-value=0.0011 Score=67.54 Aligned_cols=34 Identities=29% Similarity=0.450 Sum_probs=30.6
Q ss_pred ccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhc
Q psy5743 416 VILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLR 450 (644)
Q Consensus 416 ~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g 450 (644)
..+++..+.+ .|.-++|+|+||+||||++..|.+
T Consensus 133 ~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 133 TSLHGVLVDV-YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp EEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred eeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 4678888877 899999999999999999999987
No 279
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.52 E-value=0.0014 Score=62.79 Aligned_cols=29 Identities=34% Similarity=0.597 Sum_probs=23.1
Q ss_pred ceeEEEeCCCEEEEECCCCCcHHHHHHHHh
Q psy5743 420 DLSLKIQSGSMTSVIGSSGSGKSTLAMLLL 449 (644)
Q Consensus 420 ~isl~i~~G~~vaIvG~SGsGKSTLl~lL~ 449 (644)
+.++++.+ ...+|+||+||||||++.+|.
T Consensus 16 ~~~i~f~~-~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 16 DTVVEFKE-GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEeCC-CeEEEEcCCCCCHHHHHHHHH
Confidence 34455545 489999999999999999875
No 280
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.50 E-value=0.0014 Score=61.56 Aligned_cols=27 Identities=22% Similarity=0.326 Sum_probs=23.4
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhccCC
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRLYD 453 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~~~ 453 (644)
+|..+.|+|++||||||+.+.|...+.
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 367899999999999999999987653
No 281
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=96.49 E-value=0.00087 Score=70.38 Aligned_cols=59 Identities=19% Similarity=0.096 Sum_probs=42.7
Q ss_pred EEEEECCCCCcHHHHHHHHhccCCCCCcEEEECCccCCCCChHHHhcceEEEecCCCCCcccHHHHHhcCCCCCCCCCHH
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKS 509 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg~~i~~~~~~~lr~~i~~V~Q~~~Lf~gTIreNI~~g~~~~~~~~~~ 509 (644)
+++|||++|+|||||++.|.|.. + ++.+++.. |+..|+.... .+++
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~-~----------~v~~~p~~------------------Ti~pn~g~~~-----v~~~ 48 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRAN-A----------LAANYPFA------------------TIDKNVGVVP-----LEDE 48 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHH-T----------TCSSCCGG------------------GGSTTEEEEE-----CCCH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC-C----------cccCCCCc------------------eeccceeeEe-----cChH
Confidence 58999999999999999999974 3 12222211 6666666552 5678
Q ss_pred HHHHHHHHHhhcc
Q psy5743 510 DIIHAAKEANAYG 522 (644)
Q Consensus 510 ~i~~a~~~a~l~~ 522 (644)
++..+++.++.++
T Consensus 49 ~l~~~~~~~~~~~ 61 (368)
T 2dby_A 49 RLYALQRTFAKGE 61 (368)
T ss_dssp HHHHHHHHHCBTT
T ss_pred HHHHHHHHhcccc
Confidence 8888888888765
No 282
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.49 E-value=0.00091 Score=62.07 Aligned_cols=35 Identities=26% Similarity=0.308 Sum_probs=27.2
Q ss_pred CEEEEECCCCCcHHHHHHHHhccCCCCC---cEEEECC
Q psy5743 429 SMTSVIGSSGSGKSTLAMLLLRLYDPQN---GKILIDG 463 (644)
Q Consensus 429 ~~vaIvG~SGsGKSTLl~lL~g~~~p~~---G~I~idg 463 (644)
..++|+|+||||||||+..|++.+.+.. |.|..+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~ 42 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHG 42 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCC
Confidence 4799999999999999999999875432 4455443
No 283
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.47 E-value=0.0014 Score=61.30 Aligned_cols=26 Identities=27% Similarity=0.381 Sum_probs=23.0
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
++..+.|+|++||||||+.+.|...+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 47789999999999999999998765
No 284
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.47 E-value=0.01 Score=56.35 Aligned_cols=43 Identities=26% Similarity=0.322 Sum_probs=29.9
Q ss_pred cCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCch
Q psy5743 558 KKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLS 601 (644)
Q Consensus 558 ~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~ 601 (644)
.++.++++||+- .++.+....+.+.+.+...+..+|++|++..
T Consensus 101 ~~~~vliiDe~~-~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~ 143 (226)
T 2chg_A 101 APFKIIFLDEAD-ALTADAQAALRRTMEMYSKSCRFILSCNYVS 143 (226)
T ss_dssp CSCEEEEEETGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred cCceEEEEeChh-hcCHHHHHHHHHHHHhcCCCCeEEEEeCChh
Confidence 368899999974 4666777777777766544556666676654
No 285
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.45 E-value=0.0016 Score=61.90 Aligned_cols=27 Identities=26% Similarity=0.367 Sum_probs=25.1
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 426 QSGSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 426 ~~G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
.+|..++|+|++||||||+.+.|...+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 2 SRGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 368899999999999999999999987
No 286
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.44 E-value=0.0041 Score=58.51 Aligned_cols=52 Identities=12% Similarity=0.187 Sum_probs=33.6
Q ss_pred CCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCch-----------HHhhcCEEEEEeC
Q psy5743 559 KSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLS-----------TIRKSNQICVLDK 614 (644)
Q Consensus 559 ~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~-----------~i~~aD~Iivl~~ 614 (644)
+++++++||+-- +|++-...+.. +.+ .+..+|+..++.. .+..||.|.-|+.
T Consensus 76 ~~dvviIDE~Q~-~~~~~~~~l~~-l~~--~~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~~ 138 (184)
T 2orw_A 76 DTRGVFIDEVQF-FNPSLFEVVKD-LLD--RGIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKKA 138 (184)
T ss_dssp TEEEEEECCGGG-SCTTHHHHHHH-HHH--TTCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECCB
T ss_pred CCCEEEEECccc-CCHHHHHHHHH-HHH--CCCCEEEEeeccccccCCccchHHHHHHhhheEEeee
Confidence 578999999864 65443332222 222 2677877778443 5677999988864
No 287
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.44 E-value=0.00051 Score=79.81 Aligned_cols=34 Identities=21% Similarity=0.248 Sum_probs=30.6
Q ss_pred ceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCC
Q psy5743 420 DLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD 453 (644)
Q Consensus 420 ~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~ 453 (644)
..++.+++|+.+.++||+|+|||||++.+++.+.
T Consensus 503 ~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~ 536 (806)
T 1ypw_A 503 FLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp TTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT
T ss_pred HHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC
Confidence 3467789999999999999999999999999874
No 288
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.43 E-value=0.0063 Score=63.75 Aligned_cols=29 Identities=31% Similarity=0.535 Sum_probs=25.1
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 424 KIQSGSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 424 ~i~~G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
-+++|+.+.|.|++|||||||+.-++...
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~ 98 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQA 98 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHH
Confidence 37999999999999999999997766544
No 289
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.43 E-value=0.0011 Score=69.90 Aligned_cols=58 Identities=21% Similarity=0.293 Sum_probs=44.9
Q ss_pred HHHHHHHHccCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCchHHhhcCEEEEE
Q psy5743 549 RIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVL 612 (644)
Q Consensus 549 RiaLARAll~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~~i~~aD~Iivl 612 (644)
+.+|+++|..+|+++++|||| |.++- ..+++....+.+++.++|..+....+|+++.|
T Consensus 199 ~~~l~~~L~~~pd~illdE~~---d~e~~---~~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~l 256 (372)
T 2ewv_A 199 ADALRAALREDPDVIFVGEMR---DLETV---ETALRAAETGHLVFGTLHTNTAIDTIHRIVDI 256 (372)
T ss_dssp HHHHHHHTTSCCSEEEESCCC---SHHHH---HHHHHHHTTTCEEEECCCCCSHHHHHHHHHHT
T ss_pred HHHHHHHhhhCcCEEEECCCC---CHHHH---HHHHHHHhcCCEEEEEECcchHHHHHHHHHHh
Confidence 569999999999999999999 76653 33444444589999999998876767776544
No 290
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.43 E-value=0.0016 Score=62.78 Aligned_cols=32 Identities=34% Similarity=0.442 Sum_probs=26.6
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECC
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDG 463 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg 463 (644)
++..++|+|++||||||+++.|.. + |-..+|.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~-l----g~~~id~ 34 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD-L----GINVIDA 34 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH-T----TCEEEEH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH-c----CCEEEEc
Confidence 456899999999999999999988 3 5566665
No 291
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.42 E-value=0.0056 Score=62.51 Aligned_cols=29 Identities=28% Similarity=0.241 Sum_probs=25.8
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhcc
Q psy5743 423 LKIQSGSMTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 423 l~i~~G~~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
--+++|..+.|.||+|+|||||+..++..
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 36889999999999999999999998753
No 292
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.41 E-value=1.6 Score=48.35 Aligned_cols=91 Identities=4% Similarity=-0.038 Sum_probs=44.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 73 AKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVYLMNVSAQSI 152 (644)
Q Consensus 73 ~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (644)
+.++.+.....+++.++..++..+.+.+...++..++..-. ..... ....++++.+++..+...+..+.......++
T Consensus 16 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (582)
T 3b5x_A 16 LWTYIRLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGF--GNAES-NFLRILPFMILGLMFVRGLSGFASSYCLSWV 92 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444555555555555556655666655543210 00111 1112222223333445555566666666667
Q ss_pred HHHHHHHHHHHHHc
Q psy5743 153 TKKLRERLFGSIIS 166 (644)
Q Consensus 153 ~~~lr~~~~~~ll~ 166 (644)
..++..++-.++++
T Consensus 93 ~~~~~~~lr~~l~~ 106 (582)
T 3b5x_A 93 SGNVVMQMRRRLFN 106 (582)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777776666654
No 293
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.40 E-value=0.015 Score=62.74 Aligned_cols=27 Identities=26% Similarity=0.219 Sum_probs=24.8
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 426 QSGSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 426 ~~G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
++..-+.|.||+|+|||||++.+....
T Consensus 165 ~~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 165 TPWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp CCCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 567889999999999999999999977
No 294
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.39 E-value=0.0013 Score=61.84 Aligned_cols=27 Identities=30% Similarity=0.379 Sum_probs=24.2
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 426 QSGSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 426 ~~G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
++|..+.|+|++||||||+.+.|...+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999999999998755
No 295
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.39 E-value=0.0016 Score=63.77 Aligned_cols=28 Identities=25% Similarity=0.348 Sum_probs=24.5
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 425 IQSGSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 425 i~~G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
-++|.+++|+|++||||||+.+.|.+.+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3578999999999999999999998744
No 296
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.39 E-value=0.014 Score=62.23 Aligned_cols=37 Identities=24% Similarity=0.297 Sum_probs=29.4
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECC
Q psy5743 423 LKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDG 463 (644)
Q Consensus 423 l~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg 463 (644)
+.-+++..+.|+|++||||||+.+.|+..+ |-+.++.
T Consensus 253 ~~~~~~~lIil~G~pGSGKSTla~~L~~~~----~~~~i~~ 289 (416)
T 3zvl_A 253 LLSPNPEVVVAVGFPGAGKSTFIQEHLVSA----GYVHVNR 289 (416)
T ss_dssp SCCSSCCEEEEESCTTSSHHHHHHHHTGGG----TCEECCG
T ss_pred cCCCCCEEEEEECCCCCCHHHHHHHHHHhc----CcEEEcc
Confidence 334567899999999999999999998755 4555554
No 297
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.37 E-value=0.011 Score=61.68 Aligned_cols=27 Identities=30% Similarity=0.282 Sum_probs=24.1
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 426 QSGSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 426 ~~G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
+++.-+.|.||+|+|||||++.+...+
T Consensus 82 ~~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 82 KPTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 456679999999999999999999876
No 298
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.37 E-value=0.0014 Score=61.29 Aligned_cols=30 Identities=27% Similarity=0.362 Sum_probs=24.8
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcc----CCCCCc
Q psy5743 428 GSMTSVIGSSGSGKSTLAMLLLRL----YDPQNG 457 (644)
Q Consensus 428 G~~vaIvG~SGsGKSTLl~lL~g~----~~p~~G 457 (644)
.=+++++|++|+|||||++.+.+- +.|+.|
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g 49 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASEDISHITPTQG 49 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETT
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCC
Confidence 347999999999999999999986 345555
No 299
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=96.37 E-value=0.0025 Score=66.54 Aligned_cols=36 Identities=28% Similarity=0.446 Sum_probs=31.6
Q ss_pred CCEEEEECCCCCcHHHHHHHHhc-----------cCCCCCcEEEECC
Q psy5743 428 GSMTSVIGSSGSGKSTLAMLLLR-----------LYDPQNGKILIDG 463 (644)
Q Consensus 428 G~~vaIvG~SGsGKSTLl~lL~g-----------~~~p~~G~I~idg 463 (644)
|-+++|||.+|+|||||++.|.+ -.+|+.|.+.+++
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 56899999999999999999999 4468889888876
No 300
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.33 E-value=0.0018 Score=59.62 Aligned_cols=20 Identities=45% Similarity=0.647 Sum_probs=18.7
Q ss_pred CEEEEECCCCCcHHHHHHHH
Q psy5743 429 SMTSVIGSSGSGKSTLAMLL 448 (644)
Q Consensus 429 ~~vaIvG~SGsGKSTLl~lL 448 (644)
..++|+|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 36899999999999999999
No 301
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.32 E-value=0.0012 Score=61.54 Aligned_cols=27 Identities=26% Similarity=0.199 Sum_probs=24.1
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 426 QSGSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 426 ~~G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
.++..+.|+|++||||||+.+.|...+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 467889999999999999999998665
No 302
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.30 E-value=0.0017 Score=64.80 Aligned_cols=33 Identities=30% Similarity=0.461 Sum_probs=25.6
Q ss_pred ccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 418 L~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
+.+++...++| +.|.||+|+|||||++.+.+..
T Consensus 36 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 36 YANLGAKIPKG--VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp HHHHSCCCCSC--CCCBCSSCSSHHHHHHHHHHHH
T ss_pred HHHCCCCCCce--EEEECCCCCcHHHHHHHHHHHh
Confidence 34444445555 8899999999999999999854
No 303
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=96.24 E-value=0.017 Score=58.83 Aligned_cols=24 Identities=29% Similarity=0.261 Sum_probs=22.0
Q ss_pred EEEEECCCCCcHHHHHHHHhccCC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLYD 453 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~~ 453 (644)
.|+|+|++|+|||||++.|+|.--
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~~ 49 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRDF 49 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSCC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCCc
Confidence 699999999999999999999753
No 304
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.22 E-value=0.0025 Score=60.88 Aligned_cols=28 Identities=36% Similarity=0.463 Sum_probs=25.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhccCCC
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRLYDP 454 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~~~p 454 (644)
+|..++|.|++||||||+.+.|...+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 4778999999999999999999987754
No 305
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.22 E-value=0.0023 Score=61.27 Aligned_cols=27 Identities=33% Similarity=0.429 Sum_probs=24.4
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 426 QSGSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 426 ~~G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
++|..++|+|++||||||+.+.|...+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 578999999999999999999998754
No 306
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.21 E-value=2.1 Score=47.61 Aligned_cols=99 Identities=11% Similarity=-0.001 Sum_probs=50.0
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 64 SELKKLFTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVY 143 (644)
Q Consensus 64 ~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 143 (644)
.....+.. +.++.+.....+++.++..++..+.....-.++..++..-.. ......+ ..++++.++..++..+..+
T Consensus 20 ~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~ 95 (598)
T 3qf4_B 20 NPTATLRR-LLGYLRPHTFTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFV--PRRFDLL-PRYMLILGTIYALTSLLFW 95 (598)
T ss_dssp CHHHHHHH-HGGGTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT--TTCGGGH-HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--cCCHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 43333333 334444444555555555565556666666666655532110 1111122 2233333444455556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Q psy5743 144 LMNVSAQSITKKLRERLFGSIIS 166 (644)
Q Consensus 144 ~~~~~~~~~~~~lr~~~~~~ll~ 166 (644)
.......++..++..++-.++++
T Consensus 96 ~~~~~~~~~~~~~~~~lr~~l~~ 118 (598)
T 3qf4_B 96 LQGKIMLTLSQDVVFRLRKELFE 118 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666777777777777666654
No 307
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.21 E-value=0.014 Score=62.45 Aligned_cols=31 Identities=23% Similarity=0.293 Sum_probs=27.1
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhccCC
Q psy5743 423 LKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD 453 (644)
Q Consensus 423 l~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~ 453 (644)
+-+++..-+.+.||.|||||+|++.+++...
T Consensus 210 ~g~~~prGvLLyGPPGTGKTllAkAiA~e~~ 240 (434)
T 4b4t_M 210 MGIRAPKGALMYGPPGTGKTLLARACAAQTN 240 (434)
T ss_dssp HCCCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCCCeeEEECcCCCCHHHHHHHHHHHhC
Confidence 3467778899999999999999999999764
No 308
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.19 E-value=0.015 Score=62.07 Aligned_cols=30 Identities=20% Similarity=0.257 Sum_probs=26.0
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhccCC
Q psy5743 424 KIQSGSMTSVIGSSGSGKSTLAMLLLRLYD 453 (644)
Q Consensus 424 ~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~ 453 (644)
-+++..-+.+.||+|+|||+|++.+++...
T Consensus 202 g~~~prGiLL~GPPGtGKT~lakAiA~~~~ 231 (428)
T 4b4t_K 202 GIDPPRGVLLYGPPGTGKTMLVKAVANSTK 231 (428)
T ss_dssp CCCCCCEEEEESCTTTTHHHHHHHHHHHHT
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 456667799999999999999999998764
No 309
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.19 E-value=0.017 Score=71.24 Aligned_cols=39 Identities=23% Similarity=0.462 Sum_probs=31.5
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEE-EECC
Q psy5743 425 IQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI-LIDG 463 (644)
Q Consensus 425 i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I-~idg 463 (644)
+++|+.+.|.||+|+|||||+..++.......|.+ ++++
T Consensus 729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~ 768 (1706)
T 3cmw_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 768 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECT
T ss_pred cCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEec
Confidence 89999999999999999999999988766544433 3444
No 310
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.19 E-value=0.0023 Score=60.37 Aligned_cols=27 Identities=30% Similarity=0.526 Sum_probs=24.4
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 426 QSGSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 426 ~~G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
++|..++|+|++||||||+.+.|...+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999998765
No 311
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.15 E-value=0.0025 Score=60.99 Aligned_cols=28 Identities=25% Similarity=0.357 Sum_probs=24.7
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 425 IQSGSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 425 i~~G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
.++|..++|+|++||||||+.+.|...+
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999999998765
No 312
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.14 E-value=0.032 Score=57.45 Aligned_cols=25 Identities=28% Similarity=0.329 Sum_probs=22.5
Q ss_pred CEEEEECCCCCcHHHHHHHHhccCC
Q psy5743 429 SMTSVIGSSGSGKSTLAMLLLRLYD 453 (644)
Q Consensus 429 ~~vaIvG~SGsGKSTLl~lL~g~~~ 453 (644)
..+.|.||+|+|||||++.+.....
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~~ 80 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEMS 80 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhC
Confidence 4699999999999999999988764
No 313
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.12 E-value=0.016 Score=61.17 Aligned_cols=30 Identities=27% Similarity=0.294 Sum_probs=25.5
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhccCCC
Q psy5743 425 IQSGSMTSVIGSSGSGKSTLAMLLLRLYDP 454 (644)
Q Consensus 425 i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p 454 (644)
++|..-+.+.||.|+|||+|++.+++....
T Consensus 179 i~~prGvLL~GPPGTGKTllAkAiA~e~~~ 208 (405)
T 4b4t_J 179 IAQPKGVILYGPPGTGKTLLARAVAHHTDC 208 (405)
T ss_dssp CCCCCCEEEESCSSSSHHHHHHHHHHHHTC
T ss_pred CCCCCceEEeCCCCCCHHHHHHHHHHhhCC
Confidence 555666999999999999999999997643
No 314
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.11 E-value=0.0024 Score=59.25 Aligned_cols=23 Identities=48% Similarity=0.450 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHhccC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
.++|+|++||||||+.+.|...+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 69999999999999999998866
No 315
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.07 E-value=0.0023 Score=59.66 Aligned_cols=28 Identities=21% Similarity=0.209 Sum_probs=19.4
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhccCC
Q psy5743 426 QSGSMTSVIGSSGSGKSTLAMLLLRLYD 453 (644)
Q Consensus 426 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~ 453 (644)
.++..+.|+|++||||||+.+.|...+.
T Consensus 3 ~~~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 3 MRSPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp --CCEEEEECCC----CHHHHHHHHHST
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4678999999999999999999986653
No 316
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.05 E-value=0.0095 Score=53.36 Aligned_cols=28 Identities=21% Similarity=0.135 Sum_probs=23.7
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhccCC
Q psy5743 426 QSGSMTSVIGSSGSGKSTLAMLLLRLYD 453 (644)
Q Consensus 426 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~ 453 (644)
+.+.-+.|.||+|+|||++++.+.....
T Consensus 25 ~~~~~vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred CCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence 3466799999999999999999987653
No 317
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.04 E-value=0.024 Score=60.12 Aligned_cols=30 Identities=23% Similarity=0.302 Sum_probs=26.3
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhccCC
Q psy5743 424 KIQSGSMTSVIGSSGSGKSTLAMLLLRLYD 453 (644)
Q Consensus 424 ~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~ 453 (644)
-+++..-+.+.||.|+|||+|++.+++...
T Consensus 212 Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~ 241 (437)
T 4b4t_I 212 GIKPPKGVILYGAPGTGKTLLAKAVANQTS 241 (437)
T ss_dssp TCCCCSEEEEESSTTTTHHHHHHHHHHHHT
T ss_pred CCCCCCCCceECCCCchHHHHHHHHHHHhC
Confidence 356677799999999999999999999764
No 318
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.04 E-value=0.0026 Score=63.13 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHhccC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
.++|+||+|||||||.+.|++.+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 68999999999999999998865
No 319
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.03 E-value=2.5 Score=46.83 Aligned_cols=85 Identities=9% Similarity=0.024 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5743 79 KLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVYLMNVSAQSITKKLRE 158 (644)
Q Consensus 79 ~l~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~ 158 (644)
.....+++.++..++..+.+.....++..++..-. ..... .....+++.+++..++..+-.+.......++..++..
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (582)
T 3b60_A 22 PFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGF--GKTDR-SVLLWMPLVVIGLMILRGITSYISSYCISWVSGKVVM 98 (582)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSST--TSTTH-HHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555555555566666666655553221 01112 1222222223344455556666666777777777777
Q ss_pred HHHHHHHc
Q psy5743 159 RLFGSIIS 166 (644)
Q Consensus 159 ~~~~~ll~ 166 (644)
++..++++
T Consensus 99 ~lr~~l~~ 106 (582)
T 3b60_A 99 TMRRRLFG 106 (582)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77777664
No 320
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.00 E-value=0.0034 Score=58.17 Aligned_cols=31 Identities=35% Similarity=0.423 Sum_probs=24.2
Q ss_pred CEEEEECCCCCcHHHHHHHHhccCCCCCcEEEEC
Q psy5743 429 SMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILID 462 (644)
Q Consensus 429 ~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~id 462 (644)
..+.|+|++||||||+.+.|... .-|-..++
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~---~~~~~~i~ 33 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAK---NPGFYNIN 33 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH---STTEEEEC
T ss_pred eEEEEecCCCCCHHHHHHHHHhh---cCCcEEec
Confidence 46899999999999999999872 12555554
No 321
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.99 E-value=0.0026 Score=60.14 Aligned_cols=28 Identities=32% Similarity=0.528 Sum_probs=25.2
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 425 IQSGSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 425 i~~G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
++++..|+|+|++||||||+.+.|...+
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4568899999999999999999998866
No 322
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.96 E-value=0.0023 Score=67.18 Aligned_cols=26 Identities=15% Similarity=0.275 Sum_probs=23.3
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
++..+.|.||+|+|||||++.+....
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999999865
No 323
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.95 E-value=0.0087 Score=60.91 Aligned_cols=23 Identities=35% Similarity=0.472 Sum_probs=20.0
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHH
Q psy5743 425 IQSGSMTSVIGSSGSGKSTLAMLL 448 (644)
Q Consensus 425 i~~G~~vaIvG~SGsGKSTLl~lL 448 (644)
+++| .+-|.||+|||||||+--+
T Consensus 26 l~~G-iteI~G~pGsGKTtL~Lq~ 48 (333)
T 3io5_A 26 MQSG-LLILAGPSKSFKSNFGLTM 48 (333)
T ss_dssp BCSE-EEEEEESSSSSHHHHHHHH
T ss_pred CcCC-eEEEECCCCCCHHHHHHHH
Confidence 7899 9999999999999995443
No 324
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.94 E-value=0.015 Score=60.55 Aligned_cols=42 Identities=19% Similarity=0.186 Sum_probs=30.4
Q ss_pred CCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCch
Q psy5743 559 KSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLS 601 (644)
Q Consensus 559 ~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~ 601 (644)
++.++++||+- .++.+....+.+.+.+...+..+|++|++..
T Consensus 119 ~~~vliiDe~~-~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~ 160 (373)
T 1jr3_A 119 RFKVYLIDEVH-MLSRHSFNALLKTLEEPPEHVKFLLATTDPQ 160 (373)
T ss_dssp SSEEEEEECGG-GSCHHHHHHHHHHHHSCCSSEEEEEEESCGG
T ss_pred CeEEEEEECcc-hhcHHHHHHHHHHHhcCCCceEEEEEeCChH
Confidence 56899999974 4677777778877766544556777777664
No 325
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.94 E-value=0.0064 Score=55.33 Aligned_cols=21 Identities=33% Similarity=0.670 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLR 450 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g 450 (644)
+|+++|++|+|||||++.+.+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999987
No 326
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.94 E-value=0.0067 Score=55.76 Aligned_cols=26 Identities=19% Similarity=0.332 Sum_probs=22.9
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcc
Q psy5743 426 QSGSMTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 426 ~~G~~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
++.-+|+++|++|+|||||++.+.+-
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35668999999999999999999874
No 327
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=95.92 E-value=0.0077 Score=64.96 Aligned_cols=36 Identities=31% Similarity=0.534 Sum_probs=28.5
Q ss_pred cceeEEEeCCCE--EEEECCCCCcHHHHHHHHhccCCC
Q psy5743 419 NDLSLKIQSGSM--TSVIGSSGSGKSTLAMLLLRLYDP 454 (644)
Q Consensus 419 ~~isl~i~~G~~--vaIvG~SGsGKSTLl~lL~g~~~p 454 (644)
+.+.-.++.|+. +.|.||+|+|||||++.+.+...+
T Consensus 39 ~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~ 76 (447)
T 3pvs_A 39 KPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANA 76 (447)
T ss_dssp SHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 344444555654 999999999999999999998854
No 328
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.90 E-value=0.0038 Score=58.60 Aligned_cols=26 Identities=27% Similarity=0.461 Sum_probs=22.4
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
++..|+|+|++||||||+.+.|...+
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998655
No 329
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=95.88 E-value=0.02 Score=58.38 Aligned_cols=26 Identities=27% Similarity=0.339 Sum_probs=22.8
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
++..+.|.||+|+||||+++.+....
T Consensus 37 ~~~~vll~G~~GtGKT~la~~i~~~~ 62 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLAHVIAHEL 62 (324)
T ss_dssp CCCCCEEECCTTCCCHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHh
Confidence 44679999999999999999998765
No 330
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.86 E-value=0.0038 Score=58.52 Aligned_cols=24 Identities=33% Similarity=0.461 Sum_probs=22.0
Q ss_pred EEEEECCCCCcHHHHHHHHhccCC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLYD 453 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~~ 453 (644)
.|.|.|++||||||+.+.|...+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999988764
No 331
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=95.83 E-value=3.1 Score=46.22 Aligned_cols=146 Identities=6% Similarity=-0.010 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHcCChhhhhccChhHHHHHHHhhHHHHHHHHHHHHHHH
Q psy5743 127 LMLVFVVGACCNFGRVYLMNVSAQSITKKLRERLFGS----IISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDG 202 (644)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~----ll~~~~~~~~~~~~G~i~sr~~~D~~~i~~~~~~~~~~~ 202 (644)
.++..++..+..++......+...++..++-.++... .-+.+....-.+-+.|+- .+.. .+...+...+...
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~l~~r~~~d~~-~i~~---~~~~~~~~~~~~~ 147 (595)
T 2yl4_A 72 FLCGAAANAIRVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKTRTGELINRLSSDTA-LLGR---SVTENLSDGLRAG 147 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHSCHHHHHHHHHHHHH-HHHH---HTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCCChHHHHHHHHHHHH-HHHH---HHHHHHHHHHHHH
Confidence 3333444555556666666666666666665555432 233444444444333432 2221 1122222223333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHcC
Q psy5743 203 LRSTVMVSAGVSMMFIISSKLALISLIIVPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFS 277 (644)
Q Consensus 203 ~~~~~~~i~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~ 277 (644)
+..++.+++.+.+-+.....+.+++.+..++.........+..++..+...+.. .......+.++-++.-..-.
T Consensus 148 ~~~i~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~l~gi~~ik~~~~e~ 221 (595)
T 2yl4_A 148 AQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQAT-QLAEERIGNVRTVRAFGKEM 221 (595)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHTHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHHHHHhCccH
Confidence 333333333333333333333233333334444445555554444444333333 33333344454444443333
No 332
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.82 E-value=0.0049 Score=59.53 Aligned_cols=27 Identities=30% Similarity=0.377 Sum_probs=24.0
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 426 QSGSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 426 ~~G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
++|..+.|+|++||||||+.+.|...+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999999999998766
No 333
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=95.80 E-value=0.0037 Score=59.15 Aligned_cols=22 Identities=45% Similarity=0.507 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
+|+|+|++|+|||||++.+.|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 7999999999999999999764
No 334
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.79 E-value=0.021 Score=65.93 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=21.6
Q ss_pred EEEEECCCCCcHHHHHHHHhccC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
.+.++||+|+|||++++.+...+
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999886
No 335
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.77 E-value=0.0042 Score=60.33 Aligned_cols=27 Identities=22% Similarity=0.372 Sum_probs=23.2
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 426 QSGSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 426 ~~G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
.++..+.|+|++||||||+.+.|...+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999999999998766
No 336
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.75 E-value=0.0055 Score=58.19 Aligned_cols=26 Identities=31% Similarity=0.378 Sum_probs=23.3
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
++..++|+|++||||||+.+.|...+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998765
No 337
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=95.75 E-value=0.024 Score=61.80 Aligned_cols=28 Identities=18% Similarity=0.265 Sum_probs=24.9
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 425 IQSGSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 425 i~~G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
+++...+.|.||+|+|||++++.+....
T Consensus 235 ~~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 5667789999999999999999998865
No 338
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.74 E-value=0.029 Score=60.06 Aligned_cols=31 Identities=26% Similarity=0.288 Sum_probs=27.1
Q ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhccCC
Q psy5743 423 LKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD 453 (644)
Q Consensus 423 l~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~ 453 (644)
+-+++..-+.+.||.|+|||+|++.+++...
T Consensus 238 ~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~ 268 (467)
T 4b4t_H 238 LGIDPPKGILLYGPPGTGKTLCARAVANRTD 268 (467)
T ss_dssp HTCCCCSEEEECSCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCCCceEeeCCCCCcHHHHHHHHHhccC
Confidence 3467788899999999999999999998764
No 339
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.74 E-value=0.0028 Score=64.31 Aligned_cols=26 Identities=35% Similarity=0.543 Sum_probs=20.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
++-.|+|.|+|||||||+.+.|...+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998755
No 340
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.72 E-value=0.0072 Score=54.90 Aligned_cols=23 Identities=22% Similarity=0.410 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhccC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
+++++|++|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998765
No 341
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.71 E-value=0.0051 Score=57.91 Aligned_cols=24 Identities=38% Similarity=0.502 Sum_probs=21.8
Q ss_pred EEEEECCCCCcHHHHHHHHhccCC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLYD 453 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~~ 453 (644)
.++|.|++||||||+.+.|...++
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999988763
No 342
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.71 E-value=0.0082 Score=54.34 Aligned_cols=22 Identities=36% Similarity=0.537 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
+++++|++|+|||||++.+.+-
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
No 343
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.70 E-value=0.0047 Score=57.66 Aligned_cols=25 Identities=32% Similarity=0.480 Sum_probs=22.0
Q ss_pred CCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 428 GSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 428 G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
+..|+|+|++||||||+.+.|...+
T Consensus 2 ~~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 2 APKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CCSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3569999999999999999998765
No 344
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.69 E-value=0.005 Score=58.55 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=21.6
Q ss_pred EEEEECCCCCcHHHHHHHHhccC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
.++|.|++||||||+.+.|.+.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 89999999999999999998865
No 345
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.68 E-value=0.0053 Score=55.71 Aligned_cols=22 Identities=23% Similarity=0.304 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
+++++|++|+|||||++.+.+-
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999874
No 346
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.66 E-value=0.0047 Score=58.69 Aligned_cols=26 Identities=35% Similarity=0.493 Sum_probs=22.9
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
+...|+|+|++||||||+.+.|...+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 44579999999999999999998766
No 347
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.65 E-value=0.0054 Score=58.87 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhccC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
+++|+|++||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999997655
No 348
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.65 E-value=0.0055 Score=56.42 Aligned_cols=24 Identities=25% Similarity=0.371 Sum_probs=21.6
Q ss_pred CEEEEECCCCCcHHHHHHHHhccC
Q psy5743 429 SMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 429 ~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
..++|+|++||||||+.+.|...+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998765
No 349
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.65 E-value=0.006 Score=56.03 Aligned_cols=25 Identities=40% Similarity=0.300 Sum_probs=22.0
Q ss_pred CCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 428 GSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 428 G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
-+.++|+|+.||||||+.+.|...+
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHh
Confidence 4789999999999999999998754
No 350
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.63 E-value=0.0084 Score=55.08 Aligned_cols=22 Identities=32% Similarity=0.578 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
+++++|++|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999876
No 351
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.62 E-value=0.005 Score=59.55 Aligned_cols=27 Identities=26% Similarity=0.332 Sum_probs=23.8
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhccCC
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRLYD 453 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~~~ 453 (644)
++..+.|+|++||||||+.+.|...+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999987663
No 352
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.62 E-value=0.0052 Score=59.03 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhccC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
.++|+|++||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999997766
No 353
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.59 E-value=0.019 Score=58.79 Aligned_cols=43 Identities=19% Similarity=0.331 Sum_probs=30.7
Q ss_pred CCCEEEeecccCCCC-HHHHHHHHHHHHHHcCCceEEEEccCchH
Q psy5743 559 KSKILLLDEATSALD-AENEYLVQSAIEKLIEGKTVLTIAHRLST 602 (644)
Q Consensus 559 ~p~IliLDEaTSaLD-~~~e~~i~~~l~~~~~~~TvI~IaHrl~~ 602 (644)
+++++++||+-. +. .+....+.+.+.+...+..+|++|++...
T Consensus 105 ~~~vliiDEi~~-l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~ 148 (324)
T 3u61_B 105 RQKVIVIDEFDR-SGLAESQRHLRSFMEAYSSNCSIIITANNIDG 148 (324)
T ss_dssp CEEEEEEESCCC-GGGHHHHHHHHHHHHHHGGGCEEEEEESSGGG
T ss_pred CCeEEEEECCcc-cCcHHHHHHHHHHHHhCCCCcEEEEEeCCccc
Confidence 789999999843 33 55666677777665556678888887664
No 354
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.59 E-value=0.006 Score=57.82 Aligned_cols=25 Identities=36% Similarity=0.533 Sum_probs=22.2
Q ss_pred CCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 428 GSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 428 G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
.-.++|+|.+||||||+.+.|...+
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4579999999999999999998764
No 355
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.59 E-value=0.0093 Score=56.71 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
+|+|+|++|+|||||++.+.+-
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6899999999999999988753
No 356
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.57 E-value=0.0065 Score=55.67 Aligned_cols=23 Identities=43% Similarity=0.408 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhccC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
.++|+|++||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998755
No 357
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.56 E-value=0.0053 Score=55.73 Aligned_cols=23 Identities=30% Similarity=0.445 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhccC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
+++++|++|+|||||++.+.|..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 68999999999999999998754
No 358
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.56 E-value=0.0064 Score=54.95 Aligned_cols=22 Identities=36% Similarity=0.531 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
+|+++|++|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999998864
No 359
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.55 E-value=0.042 Score=57.93 Aligned_cols=27 Identities=22% Similarity=0.262 Sum_probs=24.2
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 426 QSGSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 426 ~~G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
.++..+.|.||+|+|||||++.++...
T Consensus 146 ~~~~~vLL~GppGtGKT~la~aia~~~ 172 (389)
T 3vfd_A 146 APARGLLLFGPPGNGKTMLAKAVAAES 172 (389)
T ss_dssp CCCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 357889999999999999999998875
No 360
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.55 E-value=0.0067 Score=55.51 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhccC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
+|+|+|++|+|||||++.+.+-.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 68999999999999999998754
No 361
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.54 E-value=0.0063 Score=56.96 Aligned_cols=27 Identities=26% Similarity=0.230 Sum_probs=23.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhccCC
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRLYD 453 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~~~ 453 (644)
+.=+++++|++|+|||||++.+.+-..
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~~ 73 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDSV 73 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 344899999999999999999998653
No 362
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.54 E-value=0.0089 Score=55.96 Aligned_cols=22 Identities=36% Similarity=0.477 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
+|+|+|++|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999874
No 363
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.53 E-value=0.026 Score=70.50 Aligned_cols=39 Identities=21% Similarity=0.329 Sum_probs=33.3
Q ss_pred Ccccccee--EEEeCCCEEEEECCCCCcHHHHHHHHhccCC
Q psy5743 415 AVILNDLS--LKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD 453 (644)
Q Consensus 415 ~~vL~~is--l~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~ 453 (644)
-+.|+++. .-+++|+.+.++|++|||||||+..++-.-.
T Consensus 1066 i~~Ld~~lg~ggi~~g~~vll~G~~GtGKT~la~~~~~ea~ 1106 (2050)
T 3cmu_A 1066 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 1106 (2050)
T ss_dssp CHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cHHHHHHhccCCcCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45688887 5799999999999999999999999885443
No 364
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.52 E-value=0.0094 Score=54.06 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
+++++|++|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999863
No 365
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.52 E-value=0.0069 Score=55.12 Aligned_cols=23 Identities=43% Similarity=0.460 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhccC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
+++++|++|+|||||++.+.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 58999999999999999998654
No 366
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.51 E-value=0.0092 Score=57.76 Aligned_cols=26 Identities=15% Similarity=0.195 Sum_probs=19.5
Q ss_pred CCCE-EEEECCCCCcHHHHHHHHhccC
Q psy5743 427 SGSM-TSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 427 ~G~~-vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
+|+. +.+.|+.|+||||++--+....
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~la~~l 30 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQAAHAQ 30 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHH
Confidence 5664 8889999999999955554443
No 367
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.51 E-value=0.0068 Score=54.60 Aligned_cols=23 Identities=30% Similarity=0.401 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhccC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
+++++|++|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999754
No 368
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.50 E-value=0.0087 Score=56.10 Aligned_cols=22 Identities=32% Similarity=0.478 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
+|+|+|++|+|||||++.+++-
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6999999999999999999986
No 369
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.50 E-value=0.0067 Score=54.85 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
+++++|++|+|||||++.+.+-
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999864
No 370
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.49 E-value=0.013 Score=60.11 Aligned_cols=27 Identities=30% Similarity=0.282 Sum_probs=23.8
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 426 QSGSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 426 ~~G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
.+..-+.|.||+|+|||||++.+....
T Consensus 49 ~~~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 49 KPTSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 456779999999999999999998864
No 371
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.49 E-value=0.0061 Score=60.32 Aligned_cols=24 Identities=29% Similarity=0.497 Sum_probs=21.6
Q ss_pred CEEEEECCCCCcHHHHHHHHhccC
Q psy5743 429 SMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 429 ~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
-.|+|.|++||||||+.+.|...+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 469999999999999999998755
No 372
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.48 E-value=0.0062 Score=54.87 Aligned_cols=23 Identities=35% Similarity=0.547 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhccC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
+++++|++|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998753
No 373
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.47 E-value=0.0067 Score=59.72 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=23.5
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
++-.+.|.|++||||||+.+.|...+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 56789999999999999999998765
No 374
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.47 E-value=0.007 Score=56.72 Aligned_cols=23 Identities=35% Similarity=0.440 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHhccC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
.++|.|++||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998866
No 375
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.47 E-value=0.012 Score=54.53 Aligned_cols=26 Identities=15% Similarity=0.149 Sum_probs=22.2
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhcc
Q psy5743 426 QSGSMTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 426 ~~G~~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
++.=+++++|++|+|||||++.+.+-
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 34557999999999999999999874
No 376
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.45 E-value=0.0072 Score=54.99 Aligned_cols=22 Identities=18% Similarity=0.302 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
+++++|++|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999865
No 377
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=95.45 E-value=0.0059 Score=61.27 Aligned_cols=23 Identities=43% Similarity=0.433 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhccC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
+|+|||++|+|||||++.|++--
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999988753
No 378
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.44 E-value=0.0077 Score=61.97 Aligned_cols=27 Identities=26% Similarity=0.514 Sum_probs=24.5
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhccCC
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRLYD 453 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~~~ 453 (644)
++..+.|+||+|||||||...|+.-+.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 567899999999999999999998774
No 379
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.44 E-value=0.0064 Score=60.87 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=22.1
Q ss_pred EEEEECCCCCcHHHHHHHHhccCC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLYD 453 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~~ 453 (644)
+++++|++|||||||++.|.|...
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~~ 28 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLRQ 28 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 689999999999999999999753
No 380
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=95.43 E-value=0.0065 Score=60.38 Aligned_cols=23 Identities=30% Similarity=0.348 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHhccC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
+|+++|.+|||||||++.|.|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999974
No 381
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.42 E-value=0.0072 Score=60.12 Aligned_cols=27 Identities=26% Similarity=0.337 Sum_probs=23.3
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 426 QSGSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 426 ~~G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
+++..|.|+|++||||||+.+.|...+
T Consensus 2 ~~~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 2 GDIMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 356789999999999999999998764
No 382
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.42 E-value=0.0074 Score=54.77 Aligned_cols=23 Identities=17% Similarity=0.336 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhccC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
+|+++|++|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998643
No 383
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.42 E-value=0.0067 Score=55.12 Aligned_cols=23 Identities=35% Similarity=0.413 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhccC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
+|+++|++|+|||||++.+.+--
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999998643
No 384
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=95.41 E-value=0.011 Score=55.01 Aligned_cols=22 Identities=27% Similarity=0.404 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
+++++|++|+|||||++.+.+-
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999875
No 385
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.40 E-value=0.007 Score=56.63 Aligned_cols=25 Identities=32% Similarity=0.518 Sum_probs=22.3
Q ss_pred CCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 428 GSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 428 G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
+..++|+|++||||||+.+.|...+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998755
No 386
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.40 E-value=0.0076 Score=55.30 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
+|+++|++|+|||||++.+.+-
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 387
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=95.40 E-value=0.0076 Score=55.45 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhccC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
+|+++|++|+|||||++.+.+-.
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 69999999999999999988643
No 388
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.40 E-value=0.011 Score=56.11 Aligned_cols=36 Identities=28% Similarity=0.324 Sum_probs=28.9
Q ss_pred ccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 416 VILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 416 ~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
..++..-+.+ .|..+.|+||||||||||+..|..-.
T Consensus 23 ~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 23 RSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp CCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred eeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 3466655554 68899999999999999999998654
No 389
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.34 E-value=0.0077 Score=55.35 Aligned_cols=22 Identities=36% Similarity=0.480 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
+|+|+|++|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999874
No 390
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.31 E-value=0.0073 Score=56.53 Aligned_cols=25 Identities=24% Similarity=0.258 Sum_probs=22.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcc
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
+--+++++|++|+|||||++.+.+-
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999875
No 391
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=95.31 E-value=0.013 Score=55.47 Aligned_cols=22 Identities=36% Similarity=0.407 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
+|+|+|++|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 392
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.29 E-value=0.024 Score=57.57 Aligned_cols=42 Identities=24% Similarity=0.316 Sum_probs=28.6
Q ss_pred CCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccCch
Q psy5743 559 KSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLS 601 (644)
Q Consensus 559 ~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHrl~ 601 (644)
++.++++||+-. ++.+....+.+.+.+...+..+|++|++.+
T Consensus 107 ~~~viiiDe~~~-l~~~~~~~L~~~le~~~~~~~~il~~~~~~ 148 (323)
T 1sxj_B 107 KHKIVILDEADS-MTAGAQQALRRTMELYSNSTRFAFACNQSN 148 (323)
T ss_dssp CCEEEEEESGGG-SCHHHHHTTHHHHHHTTTTEEEEEEESCGG
T ss_pred CceEEEEECccc-CCHHHHHHHHHHHhccCCCceEEEEeCChh
Confidence 478999999743 455566667777766544556777777654
No 393
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.25 E-value=0.0093 Score=55.69 Aligned_cols=25 Identities=20% Similarity=0.084 Sum_probs=22.4
Q ss_pred EEEEECCCCCcHHHHHHHHhccCCC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLYDP 454 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~~p 454 (644)
+|+|+|++|+|||||++.+.|...+
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhccc
Confidence 6899999999999999999987653
No 394
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=95.25 E-value=0.0079 Score=56.09 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=21.7
Q ss_pred CEEEEECCCCCcHHHHHHHHhccC
Q psy5743 429 SMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 429 ~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
-+++++|++|+|||||++.+++-.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCc
Confidence 379999999999999999998764
No 395
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.23 E-value=0.0092 Score=55.32 Aligned_cols=23 Identities=35% Similarity=0.548 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhccC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
+|+++|++|+|||||++.+.+-.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 68999999999999999998643
No 396
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.22 E-value=0.0078 Score=60.66 Aligned_cols=23 Identities=39% Similarity=0.408 Sum_probs=20.9
Q ss_pred CCEEEEECCCCCcHHHHHHHHhc
Q psy5743 428 GSMTSVIGSSGSGKSTLAMLLLR 450 (644)
Q Consensus 428 G~~vaIvG~SGsGKSTLl~lL~g 450 (644)
...|+|+|++||||||+.+.|..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999984
No 397
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.19 E-value=0.0097 Score=53.79 Aligned_cols=21 Identities=24% Similarity=0.314 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLR 450 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g 450 (644)
+++++|++|+|||||++.+.+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999976
No 398
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=95.19 E-value=0.015 Score=53.61 Aligned_cols=21 Identities=24% Similarity=0.510 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLR 450 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g 450 (644)
+|+|+|++|+|||||++.+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 689999999999999999983
No 399
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=95.17 E-value=0.061 Score=54.71 Aligned_cols=29 Identities=28% Similarity=0.297 Sum_probs=25.2
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhccCCC
Q psy5743 426 QSGSMTSVIGSSGSGKSTLAMLLLRLYDP 454 (644)
Q Consensus 426 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~p 454 (644)
+.+..+.|.||+|+|||++++.+....+.
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~ 51 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVARALHACSAR 51 (304)
T ss_dssp STTSCEEEESCTTSCHHHHHHHHHHHSSC
T ss_pred CCCCcEEEECCCCchHHHHHHHHHHhCcc
Confidence 45778999999999999999999987653
No 400
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.17 E-value=0.0096 Score=55.35 Aligned_cols=22 Identities=23% Similarity=0.270 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
+|+|+|++|+|||||++.+.+-
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999863
No 401
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.17 E-value=0.011 Score=54.32 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
+++++|++|+|||||++.+.+-
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 402
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=95.17 E-value=0.0098 Score=59.64 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHhccC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
+|+++|++|+|||||++.|.|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999964
No 403
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=95.13 E-value=0.01 Score=53.98 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=20.7
Q ss_pred CCEEEEECCCCCcHHHHHHHHhc
Q psy5743 428 GSMTSVIGSSGSGKSTLAMLLLR 450 (644)
Q Consensus 428 G~~vaIvG~SGsGKSTLl~lL~g 450 (644)
.=+++++|++|+|||||++.+.+
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34799999999999999999976
No 404
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=95.12 E-value=0.0091 Score=55.48 Aligned_cols=23 Identities=35% Similarity=0.250 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhccC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
+|+++|++|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 58999999999999999998853
No 405
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.12 E-value=0.01 Score=54.55 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhccC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
+|+++|++|+|||||++.+.+-.
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 69999999999999999998643
No 406
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.12 E-value=0.018 Score=53.20 Aligned_cols=34 Identities=21% Similarity=0.237 Sum_probs=26.6
Q ss_pred ccccceeEEEeCCCEEEEECCCCCcHHHHHHHHhc
Q psy5743 416 VILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLR 450 (644)
Q Consensus 416 ~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g 450 (644)
..++..-+ --.|.-+.|.|+||+|||||...|..
T Consensus 5 ~~lHas~v-~v~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 5 QTWHANFL-VIDKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEEESEEE-EETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEEE-EECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 34454444 35688999999999999999998876
No 407
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=95.11 E-value=0.0095 Score=54.62 Aligned_cols=22 Identities=18% Similarity=0.271 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
+|+|+|++|+|||||++.+++-
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999863
No 408
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.10 E-value=0.014 Score=54.77 Aligned_cols=22 Identities=23% Similarity=0.487 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
+|+|+|++|+|||||++.+.+-
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 409
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.10 E-value=0.01 Score=57.21 Aligned_cols=26 Identities=31% Similarity=0.465 Sum_probs=23.5
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
+|..+.|+|+.||||||+.+.|...+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998766
No 410
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.10 E-value=0.016 Score=54.28 Aligned_cols=21 Identities=33% Similarity=0.637 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLR 450 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g 450 (644)
+|+|+|++|+|||||++.+.+
T Consensus 10 ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHc
Confidence 799999999999999999987
No 411
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=95.08 E-value=0.01 Score=60.38 Aligned_cols=22 Identities=36% Similarity=0.551 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
+|+|||++|+|||||++.|+|.
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999985
No 412
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.07 E-value=0.01 Score=61.29 Aligned_cols=25 Identities=20% Similarity=0.538 Sum_probs=22.7
Q ss_pred CEEEEECCCCCcHHHHHHHHhccCC
Q psy5743 429 SMTSVIGSSGSGKSTLAMLLLRLYD 453 (644)
Q Consensus 429 ~~vaIvG~SGsGKSTLl~lL~g~~~ 453 (644)
..++|+||||||||||.+.|...+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 4799999999999999999998774
No 413
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=95.06 E-value=0.014 Score=54.71 Aligned_cols=24 Identities=21% Similarity=0.213 Sum_probs=21.4
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLR 450 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g 450 (644)
+.-+|+|+|++|+|||||++.+.+
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 344789999999999999999987
No 414
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.05 E-value=0.012 Score=59.88 Aligned_cols=26 Identities=15% Similarity=0.494 Sum_probs=23.0
Q ss_pred CCEEEEECCCCCcHHHHHHHHhccCC
Q psy5743 428 GSMTSVIGSSGSGKSTLAMLLLRLYD 453 (644)
Q Consensus 428 G~~vaIvG~SGsGKSTLl~lL~g~~~ 453 (644)
+..++|+||||||||||...|+.-++
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCc
Confidence 45789999999999999999988763
No 415
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.05 E-value=0.0056 Score=65.78 Aligned_cols=43 Identities=23% Similarity=0.380 Sum_probs=33.6
Q ss_pred cccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccCCCCCcEEE
Q psy5743 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKIL 460 (644)
Q Consensus 417 vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~ 460 (644)
+++.+ ..+-+|++++|+|+||+|||||++.|.+......|.|.
T Consensus 141 ~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~ 183 (473)
T 1sky_E 141 VVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGIS 183 (473)
T ss_dssp HHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCCE
T ss_pred HHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhhhccCcEE
Confidence 34444 67789999999999999999999999887654444443
No 416
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.05 E-value=0.011 Score=54.11 Aligned_cols=23 Identities=30% Similarity=0.314 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhccC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
+++++|++|+|||||++.+.+-.
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998743
No 417
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.05 E-value=0.011 Score=55.08 Aligned_cols=22 Identities=36% Similarity=0.605 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
+|+++|++|+|||||++.+.+-
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6999999999999999999874
No 418
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.03 E-value=0.011 Score=54.29 Aligned_cols=23 Identities=26% Similarity=0.489 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhccC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
+++++|++|+|||||++.+.+-.
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 68999999999999999998753
No 419
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.02 E-value=0.076 Score=51.41 Aligned_cols=51 Identities=22% Similarity=0.211 Sum_probs=40.3
Q ss_pred cCCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEEEccC-----------chHHhhcCEEEEEe
Q psy5743 558 KKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHR-----------LSTIRKSNQICVLD 613 (644)
Q Consensus 558 ~~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~IaHr-----------l~~i~~aD~Iivl~ 613 (644)
.+.+++++||+-=..| ...+.+.+.+ .++.||+-.++ ...+..||.|.-|+
T Consensus 89 ~~~dvViIDEaQF~~~---v~el~~~l~~--~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD---IVEFCEAMAN--AGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp TTCSEEEESSGGGCTT---HHHHHHHHHH--TTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred ccCCEEEEEchhhhhh---HHHHHHHHHh--CCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 6789999999998865 4455566655 48888888888 55688999999884
No 420
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=95.01 E-value=0.016 Score=55.14 Aligned_cols=22 Identities=27% Similarity=0.404 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
+|+++|++|+|||||++.+.+-
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6999999999999999999975
No 421
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=94.99 E-value=0.012 Score=54.39 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
+|+++|++|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 6999999999999999999864
No 422
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=94.97 E-value=0.011 Score=56.90 Aligned_cols=25 Identities=24% Similarity=0.247 Sum_probs=22.7
Q ss_pred CCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 428 GSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 428 G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
+..++|+|++||||||+.+.|...+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4579999999999999999998876
No 423
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.97 E-value=0.011 Score=57.59 Aligned_cols=28 Identities=21% Similarity=0.324 Sum_probs=22.7
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhccCC
Q psy5743 426 QSGSMTSVIGSSGSGKSTLAMLLLRLYD 453 (644)
Q Consensus 426 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~ 453 (644)
.+|..|.|.|++||||||+++.|...+.
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999999999988774
No 424
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=94.96 E-value=0.019 Score=53.71 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhccC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
+|+++|++|+|||||++.+.+-.
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 69999999999999999998743
No 425
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=94.95 E-value=0.013 Score=56.47 Aligned_cols=29 Identities=24% Similarity=0.437 Sum_probs=26.7
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhccCCC
Q psy5743 426 QSGSMTSVIGSSGSGKSTLAMLLLRLYDP 454 (644)
Q Consensus 426 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~p 454 (644)
++|..+.+-|++||||||+++.|...+..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 47999999999999999999999998865
No 426
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.95 E-value=0.083 Score=57.96 Aligned_cols=26 Identities=27% Similarity=0.289 Sum_probs=23.7
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
+...+.|.||+|+||||+++.+...+
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999999987
No 427
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=94.93 E-value=0.041 Score=59.54 Aligned_cols=77 Identities=19% Similarity=0.224 Sum_probs=59.0
Q ss_pred ccccCCCCCCChhHHHHHHHHH--HHcc---------------CCCEEEeecccCCCCHHHHHHHHHHHHHHcCCceEEE
Q psy5743 533 TIVGERGIMLSGGQKQRIAIAR--ALIK---------------KSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLT 595 (644)
Q Consensus 533 T~ige~G~~LSGGQkQRiaLAR--All~---------------~p~IliLDEaTSaLD~~~e~~i~~~l~~~~~~~TvI~ 595 (644)
+........+||||+|-.-+|. |++. .=.+++|||| |-+|.+..+..++.++++ +-=+|+
T Consensus 371 ~~~s~~~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l--glQlii 447 (483)
T 3euj_A 371 GWMRAESSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL--DMQLLI 447 (483)
T ss_dssp EEEECCGGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT--TCEEEE
T ss_pred ceeecccCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc--CCEEEE
Confidence 6666667789999999433322 2211 1257999999 999999999999999988 778888
Q ss_pred EccCchHHhhcCEEEEEe
Q psy5743 596 IAHRLSTIRKSNQICVLD 613 (644)
Q Consensus 596 IaHrl~~i~~aD~Iivl~ 613 (644)
+|=. ...+.+|.++.+-
T Consensus 448 atP~-~i~p~v~~~~~~~ 464 (483)
T 3euj_A 448 AAPE-NISPERGTTYKLV 464 (483)
T ss_dssp EESS-SCCCSSSEEEECC
T ss_pred ECcc-hhhhccCceEEEE
Confidence 8877 5557889999885
No 428
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.91 E-value=0.021 Score=53.61 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=21.2
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcc
Q psy5743 428 GSMTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 428 G~~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
.=+|+++|++|+|||||++.+.+-
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 347999999999999999999874
No 429
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=94.90 E-value=0.013 Score=60.00 Aligned_cols=26 Identities=31% Similarity=0.341 Sum_probs=22.7
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
|--+|||+|++|+|||||++.|+|.-
T Consensus 9 ~~g~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 9 KVGYVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34589999999999999999999853
No 430
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=94.90 E-value=0.013 Score=54.67 Aligned_cols=23 Identities=22% Similarity=0.229 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhccC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
+|+|+|++|+|||||++.+.+--
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 68999999999999999998643
No 431
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=94.88 E-value=0.012 Score=54.52 Aligned_cols=23 Identities=35% Similarity=0.447 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhccC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
+|+++|++|+|||||++.+.+-.
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 68999999999999999998643
No 432
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=94.88 E-value=0.012 Score=58.24 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=21.5
Q ss_pred CEEEEECCCCCcHHHHHHHHhccC
Q psy5743 429 SMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 429 ~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
-+|+|+|++|+|||||++.|+|--
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 369999999999999999999743
No 433
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=94.86 E-value=0.013 Score=55.29 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhccC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
+|+|+|++|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 68999999999999999998753
No 434
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=94.86 E-value=0.014 Score=61.38 Aligned_cols=30 Identities=27% Similarity=0.542 Sum_probs=24.8
Q ss_pred cceeEEEeCCCEEEEECCCCCcHHHHHHHHh
Q psy5743 419 NDLSLKIQSGSMTSVIGSSGSGKSTLAMLLL 449 (644)
Q Consensus 419 ~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~ 449 (644)
++..++..+ ...+|+|++||||||++.+|.
T Consensus 17 ~~~~i~f~~-gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 17 VNSRIKFEK-GIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEECCS-EEEEEEECTTSSHHHHHHHHH
T ss_pred cceEEecCC-CeEEEECCCCCCHHHHHHHHH
Confidence 455666655 589999999999999999875
No 435
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=94.86 E-value=0.013 Score=55.21 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
+|+|+|++|+|||||++.+.+-
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 436
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=94.83 E-value=0.014 Score=54.43 Aligned_cols=22 Identities=32% Similarity=0.317 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
+|+++|++|+|||||++.+.+-
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
No 437
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=94.79 E-value=0.018 Score=53.16 Aligned_cols=22 Identities=32% Similarity=0.567 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
+|+|+|++|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999854
No 438
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.77 E-value=0.0091 Score=55.18 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=21.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLR 450 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g 450 (644)
+.=+|+++|++|+|||||++.+.+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 445899999999999999999874
No 439
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=94.76 E-value=0.015 Score=54.81 Aligned_cols=23 Identities=22% Similarity=0.258 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhccC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
+|+|+|++|+|||||++.+.+--
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998743
No 440
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=94.76 E-value=0.015 Score=54.78 Aligned_cols=22 Identities=41% Similarity=0.588 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
+|+|+|++|+|||||++.+.|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6999999999999999999874
No 441
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.75 E-value=0.014 Score=56.06 Aligned_cols=23 Identities=26% Similarity=0.473 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhccC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
.++|.|++||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998755
No 442
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=94.74 E-value=0.041 Score=61.22 Aligned_cols=29 Identities=24% Similarity=0.370 Sum_probs=25.3
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhccCCCC
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRLYDPQ 455 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~~~p~ 455 (644)
.+..+.|.|+.|+||||+++.+...+...
T Consensus 203 ~~~~~~I~G~pGTGKTt~i~~l~~~l~~~ 231 (574)
T 3e1s_A 203 GHRLVVLTGGPGTGKSTTTKAVADLAESL 231 (574)
T ss_dssp TCSEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred hCCEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999999877543
No 443
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=94.73 E-value=0.008 Score=57.73 Aligned_cols=25 Identities=28% Similarity=0.248 Sum_probs=22.3
Q ss_pred CCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 428 GSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 428 G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
.-+|+|+|++|+|||||++.|+|--
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 4579999999999999999999864
No 444
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=94.73 E-value=0.014 Score=54.68 Aligned_cols=22 Identities=32% Similarity=0.407 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
+|+|+|++|+|||||++.+.+-
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 445
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.72 E-value=0.015 Score=55.64 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=21.7
Q ss_pred CEEEEECCCCCcHHHHHHHHhccC
Q psy5743 429 SMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 429 ~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
-+++++|++|+|||||++.+.+-.
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 478999999999999999999865
No 446
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=94.72 E-value=0.015 Score=53.63 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
+|+++|++|+|||||++.+.+-
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999753
No 447
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=94.72 E-value=0.015 Score=56.32 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=21.0
Q ss_pred CEEEEECCCCCcHHHHHHHHhcc
Q psy5743 429 SMTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 429 ~~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
-+|+|+|++|+|||||++.+.+-
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999874
No 448
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=94.72 E-value=0.019 Score=53.58 Aligned_cols=23 Identities=35% Similarity=0.369 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhccC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
+|+|+|++|+|||||++.+.+-.
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 59999999999999999998743
No 449
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=94.71 E-value=0.014 Score=55.17 Aligned_cols=25 Identities=20% Similarity=0.191 Sum_probs=21.9
Q ss_pred CCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 428 GSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 428 G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
.=+|+|+|++|+|||||++.+.+-.
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCC
Confidence 3479999999999999999999754
No 450
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.70 E-value=0.0069 Score=57.63 Aligned_cols=35 Identities=17% Similarity=0.255 Sum_probs=24.4
Q ss_pred ccceeEEEeCCCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 418 L~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
..|+.+.-.+--+|+++|++|+|||||++.+.+-.
T Consensus 15 ~~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 15 TENLYFQSMIRKKLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp ----CGGGSEEEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred ccccccccccCcEEEEECcCCCCHHHHHHHHhcCC
Confidence 34444443334479999999999999999999743
No 451
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.70 E-value=0.016 Score=56.10 Aligned_cols=23 Identities=35% Similarity=0.499 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhccC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
.+.|.|++||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998765
No 452
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.69 E-value=0.018 Score=56.10 Aligned_cols=26 Identities=31% Similarity=0.512 Sum_probs=23.5
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
++..+.|+|+.||||||+.+.|...+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998776
No 453
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.69 E-value=0.016 Score=55.82 Aligned_cols=29 Identities=28% Similarity=0.348 Sum_probs=25.6
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhccCCC
Q psy5743 426 QSGSMTSVIGSSGSGKSTLAMLLLRLYDP 454 (644)
Q Consensus 426 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~p 454 (644)
.+|..++|.|++||||||+++.|...+..
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 46899999999999999999999887754
No 454
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.67 E-value=0.018 Score=53.27 Aligned_cols=28 Identities=21% Similarity=0.291 Sum_probs=24.2
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhccCC
Q psy5743 426 QSGSMTSVIGSSGSGKSTLAMLLLRLYD 453 (644)
Q Consensus 426 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~ 453 (644)
..+..+.|+||+|+|||||++.+...+.
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 3467899999999999999999988764
No 455
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=94.67 E-value=0.016 Score=54.53 Aligned_cols=26 Identities=23% Similarity=0.418 Sum_probs=22.5
Q ss_pred CEEEEECCCCCcHHHHHHHHhccCCC
Q psy5743 429 SMTSVIGSSGSGKSTLAMLLLRLYDP 454 (644)
Q Consensus 429 ~~vaIvG~SGsGKSTLl~lL~g~~~p 454 (644)
=+++++|++|+|||||++.+.+-+.+
T Consensus 21 ~ki~~vG~~~vGKTsLi~~l~~~~~~ 46 (196)
T 3llu_A 21 PRILLMGLRRSGKSSIQKVVFHKMSP 46 (196)
T ss_dssp CEEEEEESTTSSHHHHHHHHHSCCCG
T ss_pred eEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 37999999999999999999886543
No 456
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=94.66 E-value=0.016 Score=54.14 Aligned_cols=22 Identities=32% Similarity=0.456 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
+++|+|++|+|||||++.+.+-
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999874
No 457
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.66 E-value=0.015 Score=54.45 Aligned_cols=23 Identities=22% Similarity=0.248 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhccC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
+|+|+|++|+|||||++.+.+-.
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 68999999999999999998754
No 458
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=94.63 E-value=0.016 Score=59.43 Aligned_cols=25 Identities=28% Similarity=0.429 Sum_probs=22.8
Q ss_pred CEEEEECCCCCcHHHHHHHHhccCC
Q psy5743 429 SMTSVIGSSGSGKSTLAMLLLRLYD 453 (644)
Q Consensus 429 ~~vaIvG~SGsGKSTLl~lL~g~~~ 453 (644)
..+.|+||+|||||||.+.|...+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4799999999999999999998774
No 459
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.63 E-value=0.099 Score=65.47 Aligned_cols=39 Identities=23% Similarity=0.440 Sum_probs=30.2
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhccCCCCC-cEEEECC
Q psy5743 425 IQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQN-GKILIDG 463 (644)
Q Consensus 425 i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~-G~I~idg 463 (644)
+++|+.+.|.||+|+|||||+.-++....... ..+++++
T Consensus 380 l~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis~ 419 (2050)
T 3cmu_A 380 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 419 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECT
T ss_pred ccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 89999999999999999999888876654432 2344444
No 460
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=94.61 E-value=0.015 Score=58.23 Aligned_cols=23 Identities=35% Similarity=0.364 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHhccC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
+|+++|.+|||||||++.|.|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999864
No 461
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=94.61 E-value=0.017 Score=56.48 Aligned_cols=28 Identities=21% Similarity=0.370 Sum_probs=25.4
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhccCCC
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRLYDP 454 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~~~p 454 (644)
+|..++|.|++||||||+++.|...+..
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~ 53 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQ 53 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999999887753
No 462
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=94.60 E-value=0.017 Score=57.53 Aligned_cols=30 Identities=23% Similarity=0.278 Sum_probs=23.3
Q ss_pred CEEEEECCCCCcHHHHHHHHhccCCCCCcE
Q psy5743 429 SMTSVIGSSGSGKSTLAMLLLRLYDPQNGK 458 (644)
Q Consensus 429 ~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~ 458 (644)
.+++++|.+|+|||||++.|.|-..+..|.
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~ 129 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGA 129 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCC
Confidence 589999999999999999999977654444
No 463
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=94.59 E-value=0.016 Score=54.72 Aligned_cols=22 Identities=41% Similarity=0.505 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
+|+|+|++|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6899999999999999999864
No 464
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=94.58 E-value=0.02 Score=52.70 Aligned_cols=25 Identities=16% Similarity=0.129 Sum_probs=21.6
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcc
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
+-=+++++|++|+|||||++.+.+-
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 3457999999999999999999864
No 465
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=94.56 E-value=0.053 Score=62.33 Aligned_cols=30 Identities=17% Similarity=0.236 Sum_probs=26.1
Q ss_pred EEeCCCEEEEECCCCCcHHHHHHHHhccCC
Q psy5743 424 KIQSGSMTSVIGSSGSGKSTLAMLLLRLYD 453 (644)
Q Consensus 424 ~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~ 453 (644)
.++|..-+.+.||+|+|||||++.+++...
T Consensus 234 g~~~p~GILL~GPPGTGKT~LAraiA~elg 263 (806)
T 3cf2_A 234 GVKPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp CCCCCCEEEEECCTTSCHHHHHHHHHTTTT
T ss_pred CCCCCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 456667799999999999999999998774
No 466
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.55 E-value=0.018 Score=55.84 Aligned_cols=28 Identities=29% Similarity=0.393 Sum_probs=25.3
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhccCC
Q psy5743 426 QSGSMTSVIGSSGSGKSTLAMLLLRLYD 453 (644)
Q Consensus 426 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~ 453 (644)
.+|..+++.|++||||||+++.|...+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4689999999999999999999988764
No 467
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=94.55 E-value=0.018 Score=53.77 Aligned_cols=22 Identities=23% Similarity=0.282 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
+|+|+|++|+|||||++.+.+-
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999863
No 468
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.54 E-value=0.017 Score=53.72 Aligned_cols=24 Identities=17% Similarity=0.286 Sum_probs=21.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLR 450 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g 450 (644)
+.=+|+++|++|+|||||++.+.+
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 344799999999999999999985
No 469
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=94.53 E-value=0.018 Score=54.27 Aligned_cols=26 Identities=23% Similarity=0.262 Sum_probs=21.9
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
+.=+|+|+|++|+|||||++.+.+-.
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCC
Confidence 34579999999999999999998643
No 470
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.52 E-value=0.018 Score=54.66 Aligned_cols=24 Identities=33% Similarity=0.343 Sum_probs=21.1
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcc
Q psy5743 428 GSMTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 428 G~~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
.=+|+|+|++|+|||||++.+.+-
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 347999999999999999999864
No 471
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=94.51 E-value=0.018 Score=57.11 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHhccC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
+++++|++|+|||||++.|.|-.
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999854
No 472
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.51 E-value=0.018 Score=58.51 Aligned_cols=26 Identities=27% Similarity=0.443 Sum_probs=23.1
Q ss_pred CCEEEEECCCCCcHHHHHHHHhccCC
Q psy5743 428 GSMTSVIGSSGSGKSTLAMLLLRLYD 453 (644)
Q Consensus 428 G~~vaIvG~SGsGKSTLl~lL~g~~~ 453 (644)
...+.|+||||||||||...|+..++
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCC
Confidence 45799999999999999999998763
No 473
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.51 E-value=0.016 Score=56.71 Aligned_cols=27 Identities=33% Similarity=0.418 Sum_probs=24.3
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhccCC
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRLYD 453 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~~~ 453 (644)
+|..++|.|..||||||+++.|...++
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 467899999999999999999998774
No 474
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=94.51 E-value=0.017 Score=57.43 Aligned_cols=23 Identities=30% Similarity=0.371 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhccC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
+|+++|++|+|||||++.|+|--
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999843
No 475
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=94.48 E-value=0.019 Score=53.55 Aligned_cols=23 Identities=35% Similarity=0.418 Sum_probs=20.8
Q ss_pred CEEEEECCCCCcHHHHHHHHhcc
Q psy5743 429 SMTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 429 ~~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
=+|+++|++|+|||||++.+.+-
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36999999999999999999874
No 476
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=94.48 E-value=0.015 Score=53.75 Aligned_cols=23 Identities=17% Similarity=0.264 Sum_probs=20.8
Q ss_pred CEEEEECCCCCcHHHHHHHHhcc
Q psy5743 429 SMTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 429 ~~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
=+|+++|++|+|||||++.+.+-
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999874
No 477
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=94.48 E-value=0.02 Score=55.11 Aligned_cols=28 Identities=18% Similarity=0.336 Sum_probs=25.3
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhccCCC
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRLYDP 454 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~~~p 454 (644)
+|..|.+.|++||||||+++.|...+..
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~ 29 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQ 29 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999999887753
No 478
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=94.47 E-value=0.014 Score=54.47 Aligned_cols=24 Identities=25% Similarity=0.210 Sum_probs=21.5
Q ss_pred CEEEEECCCCCcHHHHHHHHhccC
Q psy5743 429 SMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 429 ~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
=+|+++|++|+|||||++.+.+-.
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 369999999999999999998764
No 479
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=94.46 E-value=0.017 Score=57.63 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHhccC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
+++++|++|+|||||++.|+|--
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999854
No 480
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.46 E-value=0.012 Score=58.39 Aligned_cols=29 Identities=28% Similarity=0.296 Sum_probs=25.0
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhccCC
Q psy5743 425 IQSGSMTSVIGSSGSGKSTLAMLLLRLYD 453 (644)
Q Consensus 425 i~~G~~vaIvG~SGsGKSTLl~lL~g~~~ 453 (644)
.++|..|+|.|+.||||||+++.|...+.
T Consensus 21 ~~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 21 GTRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp --CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35788999999999999999999998874
No 481
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.46 E-value=0.017 Score=55.34 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=21.6
Q ss_pred CEEEEECCCCCcHHHHHHHHhccC
Q psy5743 429 SMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 429 ~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
-.++|+|++|+|||||++-|++..
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998765
No 482
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=94.43 E-value=0.02 Score=53.46 Aligned_cols=22 Identities=32% Similarity=0.573 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
+|+++|++|+|||||++.+.+-
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 6999999999999999888753
No 483
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=94.40 E-value=0.021 Score=54.50 Aligned_cols=23 Identities=26% Similarity=0.270 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhccC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
+|+|+|++|+|||||++.+.+--
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998743
No 484
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=94.40 E-value=0.036 Score=64.85 Aligned_cols=35 Identities=29% Similarity=0.268 Sum_probs=27.3
Q ss_pred CEEEEECCCCCcHHHHHHHHhccCCCCCc-EEEECC
Q psy5743 429 SMTSVIGSSGSGKSTLAMLLLRLYDPQNG-KILIDG 463 (644)
Q Consensus 429 ~~vaIvG~SGsGKSTLl~lL~g~~~p~~G-~I~idg 463 (644)
..+.|+||+|+|||++++.|...+....+ -|.+|.
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~ 624 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDM 624 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEec
Confidence 47899999999999999999998855433 344544
No 485
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=94.38 E-value=0.019 Score=54.85 Aligned_cols=21 Identities=29% Similarity=0.618 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLR 450 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g 450 (644)
+|+++|++|+|||||++.+.+
T Consensus 36 ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 699999999999999999986
No 486
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=94.36 E-value=0.016 Score=53.31 Aligned_cols=22 Identities=36% Similarity=0.419 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
+++++|++|+|||||++.+.+-
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999863
No 487
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=94.36 E-value=0.022 Score=53.64 Aligned_cols=25 Identities=20% Similarity=0.352 Sum_probs=20.8
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhcc
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
+.=+|+++|++|+|||||++.+.+-
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3447999999999999999999864
No 488
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=94.30 E-value=0.014 Score=53.85 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=9.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
+|+|+|++|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999988753
No 489
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.29 E-value=0.021 Score=57.72 Aligned_cols=32 Identities=34% Similarity=0.377 Sum_probs=24.8
Q ss_pred CEEEEECCCCCcHHHHHHHHhccCCCCCcEEEECC
Q psy5743 429 SMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDG 463 (644)
Q Consensus 429 ~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~idg 463 (644)
..+.|+|++||||||+.+.|...+ .|-..++.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~---~~~~~i~~ 34 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKN---PGFYNINR 34 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS---TTEEEECH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhC---CCcEEecc
Confidence 468999999999999999998743 25555543
No 490
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=94.29 E-value=0.028 Score=53.51 Aligned_cols=25 Identities=28% Similarity=0.254 Sum_probs=21.4
Q ss_pred CCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 428 GSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 428 G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
.-+++++|++|+|||||++.+.+-.
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3479999999999999999998754
No 491
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=94.28 E-value=0.03 Score=53.02 Aligned_cols=24 Identities=21% Similarity=0.307 Sum_probs=20.3
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLR 450 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g 450 (644)
+.=+|+++|++|+|||||++.+.+
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEEECcCCCCHHHHHHHHHh
Confidence 344799999999999999988874
No 492
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=94.27 E-value=0.02 Score=54.09 Aligned_cols=23 Identities=17% Similarity=0.369 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhccC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
+|+++|++|+|||||++.+.+--
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 69999999999999999998743
No 493
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=94.27 E-value=0.019 Score=58.01 Aligned_cols=23 Identities=22% Similarity=0.315 Sum_probs=21.6
Q ss_pred EEEEECCCCCcHHHHHHHHhccC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
+|+|+|++|+|||||++.|+|.-
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999865
No 494
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=94.21 E-value=0.036 Score=53.02 Aligned_cols=24 Identities=17% Similarity=0.297 Sum_probs=21.1
Q ss_pred CCEEEEECCCCCcHHHHHHHHhcc
Q psy5743 428 GSMTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 428 G~~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
.=+|+|+|++|+|||||++.+.+-
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 347999999999999999999864
No 495
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=94.20 E-value=0.022 Score=58.09 Aligned_cols=26 Identities=38% Similarity=0.643 Sum_probs=22.9
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhccC
Q psy5743 427 SGSMTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 427 ~G~~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
++-+++++|++|+|||||++.+.+-+
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~ 27 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNY 27 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCC
Confidence 45689999999999999999988764
No 496
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.16 E-value=0.15 Score=62.92 Aligned_cols=29 Identities=24% Similarity=0.502 Sum_probs=25.5
Q ss_pred EeCCCEEEEECCCCCcHHHHHHHHhccCC
Q psy5743 425 IQSGSMTSVIGSSGSGKSTLAMLLLRLYD 453 (644)
Q Consensus 425 i~~G~~vaIvG~SGsGKSTLl~lL~g~~~ 453 (644)
+++|+.+.|.||+|||||||+--++....
T Consensus 380 l~~G~lilI~G~pGsGKTtLaLq~a~~~~ 408 (1706)
T 3cmw_A 380 LPMGRIVEIYGPESSGKTTLTLQVIAAAQ 408 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 89999999999999999999877765543
No 497
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=94.16 E-value=0.025 Score=54.26 Aligned_cols=23 Identities=39% Similarity=0.531 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhccC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLY 452 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~ 452 (644)
+|+|+|++|+|||||++.+.|..
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~~ 61 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGVH 61 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 69999999999999999998743
No 498
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=94.15 E-value=0.021 Score=53.63 Aligned_cols=25 Identities=20% Similarity=0.254 Sum_probs=21.6
Q ss_pred eCCCEEEEECCCCCcHHHHHHHHhc
Q psy5743 426 QSGSMTSVIGSSGSGKSTLAMLLLR 450 (644)
Q Consensus 426 ~~G~~vaIvG~SGsGKSTLl~lL~g 450 (644)
++.=+|+|+|++|+|||||++.+.+
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CCccEEEEECCCCCCHHHHHHHHHh
Confidence 3455799999999999999999975
No 499
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=94.14 E-value=0.2 Score=51.56 Aligned_cols=26 Identities=23% Similarity=0.172 Sum_probs=22.5
Q ss_pred EEEEECCCCCcHHHHHHHHhccCCCC
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRLYDPQ 455 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~~~p~ 455 (644)
.+.+.||.|+||||+++.+...+...
T Consensus 26 a~L~~G~~G~GKt~~a~~la~~l~~~ 51 (334)
T 1a5t_A 26 ALLIQALPGMGDDALIYALSRYLLCQ 51 (334)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCS
T ss_pred eEEEECCCCchHHHHHHHHHHHHhCC
Confidence 48999999999999999999876543
No 500
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.05 E-value=0.024 Score=52.97 Aligned_cols=22 Identities=27% Similarity=0.327 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcc
Q psy5743 430 MTSVIGSSGSGKSTLAMLLLRL 451 (644)
Q Consensus 430 ~vaIvG~SGsGKSTLl~lL~g~ 451 (644)
+|+++|++|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6999999999999999999865
Done!