RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5743
(644 letters)
>gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein.
[Transport and binding proteins, Other].
Length = 711
Score = 523 bits (1349), Expect = e-178
Identities = 226/570 (39%), Positives = 353/570 (61%), Gaps = 11/570 (1%)
Query: 62 KKSELKKLFTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTS-DKKEMKEKM 120
L +L L+ + L A L +SS M +PF G+VID + + +
Sbjct: 145 TADLLFRLLGLSGRDWPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGPPALASAI 204
Query: 121 TSLSLLLMLVFVVGACCNFGRVYLMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGEL 180
+ LL + V R N + I ++RE LF S++ Q+ +FD++KTGEL
Sbjct: 205 FFMCLLSIASSVSAGL----RGGSFNYTMARINLRIREDLFRSLLRQDLGFFDENKTGEL 260
Query: 181 INRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLALISLIIVPPVAGLAIV 240
+R+S+DT +S+ ++ N++ LR+ VM+ + M +S +L +++LI +P V V
Sbjct: 261 TSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLINLPLVFLAEKV 320
Query: 241 YGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKE 300
+GK + ++ +Q+ +A A QVAEE +S +RTV+SF+ E+ E S F +++ +L K++
Sbjct: 321 FGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRK 380
Query: 301 ALAKGVFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNF 360
ALA + T + G I + VLYYGG +V ++ GNL SFLLY +G ++ LS
Sbjct: 381 ALAYAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYV 440
Query: 361 YSELNKGLGACHRLWEIMEREPLISTSGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILND 420
YS + + +GA +++E ++R+P I +G + L+G I+F ++ FSYP+RPD +L
Sbjct: 441 YSGMMQAVGASEKVFEYLDRKPNIPLTGTLAPLN-LEGLIEFQDVSFSYPNRPDVPVLKG 499
Query: 421 LSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGS 480
L+ + G + +++G SGSGKST+A LL LY P G++L+DGV + + D YL Q+
Sbjct: 500 LTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVAL 559
Query: 481 VSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGI 540
V QEP LFSG++ ENI YG+ D+ +I+ AAK ANA+ F+++F NG+DT VGE+G
Sbjct: 560 VGQEPVLFSGSVRENIAYGLTDT---PDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGS 616
Query: 541 MLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRL 600
LSGGQKQRIAIARAL++K ++L+LDEATSALDAE E L+Q + + +TVL IAHRL
Sbjct: 617 QLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQESRSR--ASRTVLLIAHRL 674
Query: 601 STIRKSNQICVLDKGKIVEIGSYAHLIKNP 630
ST+ +++QI VL KG +VE+G++ L+++
Sbjct: 675 STVERADQILVLKKGSVVEMGTHKQLMEDQ 704
>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein.
This protein is related to a Proteobacterial ATP
transporter that exports lipid A and to eukaryotic
P-glycoproteins.
Length = 576
Score = 493 bits (1270), Expect = e-168
Identities = 219/577 (37%), Positives = 359/577 (62%), Gaps = 8/577 (1%)
Query: 66 LKKLFTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSL 125
L L+ + + ++ A+ LL++++ T+++P+A+ +ID ++ D + +
Sbjct: 6 LAALWPFVRPYRGRVLAALVALLITAAATLSLPYAVRLMIDHGFSKDSSGL---LNRYFA 62
Query: 126 LLMLVFVVGACCNFGRVYLMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELINRIS 185
L++V +V A R YL+ + + +R +F +IS ++FDK+++GE+++R++
Sbjct: 63 FLLVVALVLALGTAARFYLVTWLGERVVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLT 122
Query: 186 ADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLALISLIIVPPVAGLAIVYGKFV 245
DT+L+ + ++S LR+ +M G+ MMFI S KL + L+ VP V +++G+ V
Sbjct: 123 TDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVLLAVPLVLLPILLFGRRV 182
Query: 246 RKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAKG 305
RK++R QD++A+A A E + IRTV++F E E S F ++ +E A++ +
Sbjct: 183 RKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRA 242
Query: 306 VFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSELN 365
+ + I+ VL+ G V ++ G L F+ YA + SIG LS + EL
Sbjct: 243 LLTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQ 302
Query: 366 KGLGACHRLWEIMEREPLIST-SGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLK 424
+ GA RL E+++ EP I + K L+GEI+F + F+YP+RPD L+ L+L
Sbjct: 303 RAAGAAERLIELLQAEPDIKAPAHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLT 362
Query: 425 IQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQE 484
++ G +++G SG+GKSTL LLLR YDPQ+G+IL+DGVD+++LDP LR+++ V Q+
Sbjct: 363 VRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQD 422
Query: 485 PTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSG 544
P LF+ ++ ENI YG D+ T ++ AA+ A+A+ F+ G+DT +GERG+ LSG
Sbjct: 423 PVLFAASVMENIRYGRPDA---TDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSG 479
Query: 545 GQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIR 604
GQ+QRIAIARA++K + ILLLDEATSALDAE+E LVQ A+E L++G+T L IAHRL+T+
Sbjct: 480 GQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVL 539
Query: 605 KSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLMKYQ 641
K+++I V+D+G+IV G++A LI ++ +L + Q
Sbjct: 540 KADRIVVMDQGRIVAQGTHAELIAK-GGLYARLARLQ 575
>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and
permease components [Defense mechanisms].
Length = 567
Score = 476 bits (1226), Expect = e-162
Identities = 217/580 (37%), Positives = 339/580 (58%), Gaps = 15/580 (2%)
Query: 63 KSELKKLFTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTS 122
S L++L K + L A+ LLL+S+ +++ +P +G++ID + ++
Sbjct: 1 LSLLRRLLKYLKY--KLLLLAILLLLLSALLSLLLPLLIGRIIDALLAD-----LGELLE 53
Query: 123 LSLLLMLVFVVGACCNFGRVYLMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELIN 182
L LLL+L+ ++G + YL + Q I LR LF ++ ++FDK K+G+LI+
Sbjct: 54 LLLLLLLLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFDKAKSGDLIS 113
Query: 183 RISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLALISLIIVPPVAGLAIVYG 242
R++ D VS V+ + S +++ + ++F +S +LALI L+I+P +A + +
Sbjct: 114 RLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLA 173
Query: 243 KFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEAL 302
+ RK++R V++ L E +S IR +K+F E E+ F ++L + +
Sbjct: 174 RKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASR 233
Query: 303 AKGVFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYS 362
+ + L + + VL GG +V ++TVG L++F+LY + I L S
Sbjct: 234 LEALLAPLMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVS 293
Query: 363 ELNKGLGACHRLWEIMEREPLISTSGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLS 422
L + A RL+E+++ EP + G I+F N+ FSYP +L D+S
Sbjct: 294 LLQRASAAAERLFELLDEEPEVEDPPDPLK--DTIGSIEFENVSFSYP--GKKPVLKDIS 349
Query: 423 LKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVS 482
I+ G +++G SGSGKSTL LLLRLYDP +G+ILIDG+DI+++ LR +IG VS
Sbjct: 350 FSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVS 409
Query: 483 QEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIML 542
Q+P LFSGTI ENI G D T +I A K ANA+ F+ + +G+DTIVGERG+ L
Sbjct: 410 QDPLLFSGTIRENIALGRPD---ATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNL 466
Query: 543 SGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLST 602
SGGQ+QR+AIARAL++ IL+LDEATSALD E E L+Q A++KL++G+T L IAHRLST
Sbjct: 467 SGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLST 526
Query: 603 IRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLMKYQT 642
I+ +++I VLD G+IVE G++ L+ ++ +L + Q
Sbjct: 527 IKNADRIIVLDNGRIVERGTHEELLAK-GGLYARLYQAQG 565
>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain
an N-terminal double-glycine peptidase domain [Defense
mechanisms].
Length = 709
Score = 391 bits (1008), Expect = e-127
Identities = 197/589 (33%), Positives = 308/589 (52%), Gaps = 13/589 (2%)
Query: 41 EKIISRYY-TSTPNNQKVGTKIKKSELKKLFTLAKSEKRKLTGAVCLLLVSSSITMAVPF 99
EK+ + P + I L L +R L + L+ + +A P
Sbjct: 116 EKLWTGIALLLAPTASRKFKDIPPFGLSWFIPLLFKYRRLLFEVLLASLLLQLLALATPL 175
Query: 100 ALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVYLMNVSAQSITKKLRER 159
VID + + +T L++ L+L + A R YL+ + + +L R
Sbjct: 176 FSQIVIDKV---LPDASRSTLTVLAIGLLLAALFEALLRLLRTYLIAHLGKRLDLELSGR 232
Query: 160 LFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFII 219
F ++ +YF+K GE+I+R+ + + + +T +I + + +++MF+
Sbjct: 233 FFRHLLRLPLSYFEKRSVGEIISRVR-ELEQIREFLTGSILTLIIDLLFALIFLAVMFLY 291
Query: 220 SSKLALISLIIVPPVAGLAIVYGKFVRKITRN--VQDKLANAVQVAEERISNIRTVKSFS 277
S KL LI L +P + +++ +R+ TR + + V E I I TVK+ +
Sbjct: 292 SWKLTLIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLV--ETIKGIETVKALA 349
Query: 278 QEKLEMSHFNAKMDDLFELAKKEALAKGVFFGFTGLSGNAIILSVLYYGGVMVSYETITV 337
E S ++ ++ + K + L + +L++G ++V +T+
Sbjct: 350 AEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQLSSVLILWFGAILVLEGELTL 409
Query: 338 GNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMEREPLISTSGGKFFSHSLK 397
G L +F + A Y I LS +++ + A RL +I++ P L+
Sbjct: 410 GQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGDKTLIHLPKLQ 469
Query: 398 GEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNG 457
GEI+F N+ F Y V L DLSL+I G +++G SGSGKSTL LLL LY PQ G
Sbjct: 470 GEIEFENVSFRYGPDDPPV-LEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQG 528
Query: 458 KILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKE 517
+IL+DGVD+ ++D LR Q+G V Q+P LFSG+I ENI G + T +II AA+
Sbjct: 529 RILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALG---NPEATDEEIIEAAQL 585
Query: 518 ANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENE 577
A A+ F+ + G+DT VGE G LSGGQ+QR+A+ARAL+ K KILLLDEATSALD E E
Sbjct: 586 AGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETE 645
Query: 578 YLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHL 626
++ + ++++G+TV+ IAHRLSTIR +++I VLD+GKIVE GS+ L
Sbjct: 646 AIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEEL 694
>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein
MsbA. This family consists of a single polypeptide
chain transporter in the ATP-binding cassette (ABC)
transporter family, MsbA, which exports lipid A. It may
also act in multidrug resistance. Lipid A, a part of
lipopolysaccharide, is found in the outer leaflet of the
outer membrane of most Gram-negative bacteria. Members
of this family are restricted to the Proteobacteria
(although lipid A is more broadly distributed) and often
are clustered with lipid A biosynthesis genes [Cell
envelope, Biosynthesis and degradation of surface
polysaccharides and lipopolysaccharides, Transport and
binding proteins, Other].
Length = 571
Score = 377 bits (970), Expect = e-123
Identities = 179/561 (31%), Positives = 308/561 (54%), Gaps = 8/561 (1%)
Query: 67 KKLFTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLL 126
++L++ + K L A +++ ++ + ++ + + + L+
Sbjct: 3 RRLWSYVRPYKAGLVLAGVAMILVAA---TESTLAALLKPLLDDGFGGRDRSVLWWVPLV 59
Query: 127 LMLVFVVGACCNFGRVYLMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELINRISA 186
++ + V+ C+F YL++ + + + +R R+F ++ ++FD+ TG L++RI+
Sbjct: 60 VIGLAVLRGICSFVSTYLLSWVSNKVVRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITF 119
Query: 187 DTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLALISLIIVPPVAGLAIVYGKFVR 246
D+ V+ T +R T+ V ++ S +L LI ++++P ++ L K +R
Sbjct: 120 DSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPVLSILMRRVSKRLR 179
Query: 247 KITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAKGV 306
+I++ +Q+ + VAEE + R VK F + E F+A + LA K A +
Sbjct: 180 RISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSI 239
Query: 307 FFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSELNK 366
T L + + VL+ ++T G+ ++F+ + + L+N + + +
Sbjct: 240 SSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQR 299
Query: 367 GLGACHRLWEIMEREPLISTSGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQ 426
GL A L+ +++ P T G +G+++F N+ F YP R D L+ +SL I+
Sbjct: 300 GLAAAESLFTLLDSPPEKDT--GTRAIERARGDVEFRNVTFRYPGR-DRPALDSISLVIE 356
Query: 427 SGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPT 486
G +++G SGSGKSTL L+ R Y+P +G+IL+DG D+ + LR Q+ VSQ+
Sbjct: 357 PGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVV 416
Query: 487 LFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQ 546
LF+ TI NI YG + +++I A A A FV G DT +GE G++LSGGQ
Sbjct: 417 LFNDTIANNIAYG--RTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQ 474
Query: 547 KQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKS 606
+QR+AIARAL+K + IL+LDEATSALD E+E LVQ+A+E+L++G+T L IAHRLSTI K+
Sbjct: 475 RQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKA 534
Query: 607 NQICVLDKGKIVEIGSYAHLI 627
++I V+D G+IVE G++ L+
Sbjct: 535 DRIVVMDDGRIVERGTHNELL 555
>gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a
mitochondrial protein MTABC3 and related proteins.
MTABC3 (also known as ABCB6) is a mitochondrial
ATP-binding cassette protein involved in iron
homeostasis and one of four ABC transporters expressed
in the mitochondrial inner membrane, the other three
being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast
MDL1 (multidrug resistance-like protein 1) and MDL2
(multidrug resistance-like protein 2) transporters are
also included in this CD. MDL1 is an ATP-dependent
permease that acts as a high-copy suppressor of ATM1 and
is thought to have a role in resistance to oxidative
stress. Interestingly, subfamily B is more closely
related to the carboxyl-terminal component of subfamily
C than the two halves of ABCC molecules are with one
another.
Length = 238
Score = 359 bits (923), Expect = e-121
Identities = 135/242 (55%), Positives = 176/242 (72%), Gaps = 4/242 (1%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
I+F N+ F YPSRPD IL LSL I G +++GSSG GKST+ LL R YDP +G+I
Sbjct: 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI 60
Query: 460 LIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEAN 519
L+DGVDI++L+ +LRSQIG VSQEP LF GTI ENI YG D T ++ AAK+AN
Sbjct: 61 LLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKPD---ATDEEVEEAAKKAN 117
Query: 520 AYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYL 579
+ F++ +G+DT+VGERG LSGGQKQRIAIARAL++ KILLLDEATSALDAE+E L
Sbjct: 118 IHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKL 177
Query: 580 VQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLMK 639
VQ A+++ ++G+T + IAHRLSTIR ++ I VL G++VE G++ L+ + KL+K
Sbjct: 178 VQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQKGV-YAKLVK 236
Query: 640 YQ 641
Q
Sbjct: 237 AQ 238
>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein;
Provisional.
Length = 582
Score = 334 bits (859), Expect = e-107
Identities = 181/527 (34%), Positives = 300/527 (56%), Gaps = 22/527 (4%)
Query: 123 LSLLLMLVFVVGACCNFGRVYLMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELIN 182
+ L+++ + ++ +F Y ++ + + +R RLFG ++ ++FDK TG L++
Sbjct: 67 MPLVVIGLMILRGITSFISSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQSTGTLLS 126
Query: 183 RISADTSLVSQCVTQNISDGLRSTVMVSAGVS------MMFIISSKLALISLIIVPPVAG 236
RI+ D+ V+ + S G TV V G S MMF S +L+LI ++I P V+
Sbjct: 127 RITYDSEQVA-----SSSSGALITV-VREGASIIGLFIMMFYYSWQLSLILIVIAPIVSI 180
Query: 237 LAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFEL 296
V K R I++N+Q+ + AE+ + + V F +++E F+ + + +
Sbjct: 181 AIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQ 240
Query: 297 AKKEALAKGVFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGI--SI 354
K A + L + + VLY +T+T G ++ +++++ I + +
Sbjct: 241 GMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDTLTAGTIT--VVFSSMIALMRPL 298
Query: 355 GGLSNFYSELNKGLGACHRLWEIMEREPLISTSGGKFFSHSLKGEIDFNNIRFSYPSRPD 414
L+N ++ +G+ AC L+ I++ E GK KG+I+F N+ F+YP + +
Sbjct: 299 KSLTNVNAQFQRGMAACQTLFAILDLEQEKDE--GKRVIERAKGDIEFRNVTFTYPGK-E 355
Query: 415 AVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYL 474
L +++ KI +G +++G SGSGKST+A LL R YD G+IL+DG D+++ L
Sbjct: 356 VPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASL 415
Query: 475 RSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTI 534
R+Q+ VSQ LF+ TI NI Y + S + I AA+ A A F+ NG DT+
Sbjct: 416 RNQVALVSQNVHLFNDTIANNIAYARTEQYS--REQIEEAARMAYAMDFINKMDNGLDTV 473
Query: 535 VGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVL 594
+GE G++LSGGQ+QRIAIARAL++ S IL+LDEATSALD E+E +Q+A+++L + +T L
Sbjct: 474 IGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSL 533
Query: 595 TIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLMKYQ 641
IAHRLSTI K+++I V++ G+IVE G++A L+ N ++ +L K Q
Sbjct: 534 VIAHRLSTIEKADEILVVEDGEIVERGTHAELLAQ-NGVYAQLHKMQ 579
>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial
lipid flippase and related proteins, subfamily C. MsbA
is an essential ABC transporter, closely related to
eukaryotic MDR proteins. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 234
Score = 306 bits (787), Expect = e-101
Identities = 115/229 (50%), Positives = 161/229 (70%), Gaps = 4/229 (1%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
++F N+ F YP V L D+SL I +G +++G SGSGKSTL L+ R YD +G+I
Sbjct: 1 VEFKNVTFRYPGDGPPV-LRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRI 59
Query: 460 LIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEAN 519
LIDG D+++ LR QIG VSQ+ LF+ T+ ENI YG T+ ++ AA+ AN
Sbjct: 60 LIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPG---ATREEVEEAARAAN 116
Query: 520 AYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYL 579
A+ F+++ G+DT++GERG+ LSGGQ+QRIAIARAL+K IL+LDEATSALD E+E L
Sbjct: 117 AHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERL 176
Query: 580 VQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIK 628
VQ+A+E+L++ +T IAHRLSTI +++I VL+ GKIVE G++ L+
Sbjct: 177 VQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLA 225
>gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC
transporter, HlyB family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 694
Score = 311 bits (799), Expect = 7e-97
Identities = 181/553 (32%), Positives = 283/553 (51%), Gaps = 48/553 (8%)
Query: 112 DKKEMKEKMTSLSLLL--MLVFVVGACCNFG-RVYLMNVSAQSITKKLRERLFGSIISQE 168
DK + +++LS+L ML + G R YL I +L RL+ ++
Sbjct: 167 DKVLVHRGLSTLSVLALAMLAVAIFEPALGGLRTYLFAHLTSRIDVELGARLYRHLLGLP 226
Query: 169 TAYFDKHKTGELINRI------------SADTSLVSQCVTQNISDGLRSTVMVSAGVSMM 216
YF+ + G+ + R+ SA T ++ D L V ++ M
Sbjct: 227 LGYFESRRVGDTVARVRELEQIRNFLTGSALTVVL---------DLLFVVVFLAV----M 273
Query: 217 FIISSKLALISLIIVPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSF 276
F S L + + + A L++ G +RK + ++ A A E ++ I T+K+
Sbjct: 274 FFYSPTLTGVVIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKAT 333
Query: 277 SQEKLEMSHFNAKMDDLFELAKKEALAKGVF-FGFTGLSGNAII-----LSVLYYGGVMV 330
+ E F + D +LA A + V G +I +L++G +V
Sbjct: 334 ATE----PQFQNRWDR--QLAAYVAASFRVTNLGNIAGQAIELIQKLTFAILLWFGAHLV 387
Query: 331 SYETITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMEREPLISTSGGK 390
++ G L +F + A + + L+ + + + A RL +I+ P S G
Sbjct: 388 IGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILN-SPTEPRSAGL 446
Query: 391 FFSHSLKGEIDFNNIRFSYPSRPDA-VILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLL 449
L+G I F NIRF Y PD+ +L++L+L I+ G ++G SGSGKSTL LL
Sbjct: 447 AALPELRGAITFENIRFRY--APDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQ 504
Query: 450 RLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKS 509
RLY PQ+G++L+DGVD+ DP +LR Q+G V QE LFS +I +NI N +
Sbjct: 505 RLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALC-NPGAPFEH- 562
Query: 510 DIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEAT 569
+IHAAK A A+ F+ + G++T VGE+G LSGGQ+QRIAIARAL+ +IL+ DEAT
Sbjct: 563 -VIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEAT 621
Query: 570 SALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKN 629
SALD E+E L+ + ++ G+TV+ IAHRLST+R ++I VL+KG+I E G + L+
Sbjct: 622 SALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLAL 681
Query: 630 PNSMFNKLMKYQT 642
++ +L + Q+
Sbjct: 682 Q-GLYARLWQQQS 693
>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of
iron-sulfur clusters transporter, subfamily C. ATM1 is
an ABC transporter that is expressed in the
mitochondria. Although the specific function of ATM1 is
unknown, its disruption results in the accumulation of
excess mitochondrial iron, loss of mitochondrial
cytochromes, oxidative damage to mitochondrial DNA, and
decreased levels of cytosolic heme proteins. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 236
Score = 285 bits (732), Expect = 1e-92
Identities = 114/243 (46%), Positives = 159/243 (65%), Gaps = 8/243 (3%)
Query: 400 IDFNNIRFSY-PSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGK 458
I+F N+ F+Y P RP +L D+S I +G +++G SGSGKST+ LL R YD +G
Sbjct: 1 IEFENVTFAYDPGRP---VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGS 57
Query: 459 ILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEA 518
ILIDG DI+E+ LR IG V Q+ LF+ TI NI YG T ++I AAK A
Sbjct: 58 ILIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYG---RPDATDEEVIEAAKAA 114
Query: 519 NAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEY 578
+ ++ F +G+DTIVGERG+ LSGG+KQR+AIARA++K ILLLDEATSALD E
Sbjct: 115 QIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTER 174
Query: 579 LVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLM 638
+Q+A+ + +G+T + IAHRLSTI +++I VL G+IVE G++ L+ ++ ++
Sbjct: 175 EIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELL-AKGGLYAEMW 233
Query: 639 KYQ 641
K Q
Sbjct: 234 KAQ 236
>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of
glucan transporter and related proteins, subfamily C.
Glucan exporter ATP-binding protein. In A. tumefaciens
cyclic beta-1, 2-glucan must be transported into the
periplasmic space to exert its action as a virulence
factor. This subfamily belongs to the MRP-like family
and is involved in drug, peptide, and lipid export. The
MRP-like family, similar to all ABC proteins, have a
common four-domain core structure constituted by two
membrane-spanning domains each composed of six
transmembrane (TM) helices and two nucleotide-binding
domains (NBD). ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 229
Score = 276 bits (708), Expect = 4e-89
Identities = 113/231 (48%), Positives = 164/231 (70%), Gaps = 5/231 (2%)
Query: 398 GEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNG 457
GEI+F N+ FSY +L D++ I+ G +++G +G+GK+TL LL+R YDPQ G
Sbjct: 1 GEIEFENVNFSY--DEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKG 58
Query: 458 KILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKE 517
+ILIDG+DI+++ LRS IG V Q+ LFSGTI ENI G ++ T ++I AAKE
Sbjct: 59 QILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNA---TDEEVIEAAKE 115
Query: 518 ANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENE 577
A A+ F++ NG+DT++GE G LS G++Q +AIARA+++ KIL+LDEATS +D E E
Sbjct: 116 AGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETE 175
Query: 578 YLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIK 628
L+Q A+EKL++G+T + IAHRLSTI+ +++I VLD GKI+E G++ L+
Sbjct: 176 KLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLA 226
>gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter
Associated with Antigen Processing, subfamily C. TAP
(Transporter Associated with Antigen Processing) is
essential for peptide delivery from the cytosol into the
lumen of the endoplasmic reticulum (ER), where these
peptides are loaded on major histocompatibility complex
(MHC) I molecules. Loaded MHC I leave the ER and display
their antigenic cargo on the cell surface to cytotoxic T
cells. Subsequently, virus-infected or malignantly
transformed cells can be eliminated. TAP belongs to the
large family of ATP-binding cassette (ABC) transporters,
which translocate a vast variety of solutes across
membranes.
Length = 226
Score = 258 bits (660), Expect = 3e-82
Identities = 109/222 (49%), Positives = 158/222 (71%), Gaps = 3/222 (1%)
Query: 396 LKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQ 455
LKG + F N+ F+YP+RPD ++L D+S + G +T+++G SGSGKST+ LL Y PQ
Sbjct: 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQ 67
Query: 456 NGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAA 515
G++L+DG I + + YL S++ V QEP LF+ ++ +NI YG+ S + + AA
Sbjct: 68 GGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGL---QSCSFECVKEAA 124
Query: 516 KEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAE 575
++A+A+ F+ + +G+DT VGE+G LSGGQKQR+AIARALI+ ++L+LDEATSALDAE
Sbjct: 125 QKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAE 184
Query: 576 NEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKI 617
+E VQ A+ E +TVL IAHRLST+ +++QI VLD G+I
Sbjct: 185 SEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226
>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd
biosynthesis, ATPase and permease components [Energy
production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 559
Score = 268 bits (687), Expect = 9e-82
Identities = 159/534 (29%), Positives = 257/534 (48%), Gaps = 39/534 (7%)
Query: 125 LLLMLVFVVGACCNFGRVYLMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELINRI 184
+LL++ V+ A + R L +A + LR+ + + A+ + G
Sbjct: 44 ILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDKLAKLGPAFIAQKPAGSAA--- 100
Query: 185 SADTSLVSQCVTQNISDGLR-------STVMVSAGVSMMFII-----SSKLALISLIIVP 232
+ I + L + +SA V ++ +I + ALI LI P
Sbjct: 101 --------TLALEGI-EQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAALILLITAP 151
Query: 233 PVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDD 292
+ I+ G + + LA +R+ + T+++F + + +D
Sbjct: 152 LIPLFMILVGLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSED 211
Query: 293 L----FELAKKEALAKGVFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAA 348
+ + L+ V F LS I L +Y G ++ +T+ L+ A
Sbjct: 212 FRKATMSVLRIAFLSSAVLEFFAYLS---IALVAVYIGFRLLGEGDLTLFAGLFVLILAP 268
Query: 349 YIGISIGGLSNFYSELNKGLGACHRLWEIMEREPLISTSGGKF-FSHSLKGEIDFNNIRF 407
+ L +F+ G A +L+ ++E SG K ++ EI N+ F
Sbjct: 269 EFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEPPIEISLENLSF 328
Query: 408 SYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIK 467
YP A L+DL+L I++G +T+++G+SG+GKSTL LLL P G+I ++G+D++
Sbjct: 329 RYPDGKPA--LSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLR 386
Query: 468 ELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDF 527
+L P R QI VSQ P LF+GTI ENIL D+S +II A +A FV
Sbjct: 387 DLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDAS---DEEIIAALDQAGLLEFVPKP 443
Query: 528 KNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKL 587
G DT++GE G LSGGQ QR+A+ARAL+ + +LLLDE T+ LDAE E ++ A+++L
Sbjct: 444 D-GLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQEL 502
Query: 588 IEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLMKYQ 641
+ KTVL I HRL +++I VLD G++VE G++ L + ++ L+K Q
Sbjct: 503 AKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEK-QGLYANLLKQQ 555
>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug
resistance protein-like transporters. The MRP
(Multidrug Resistance Protein)-like transporters are
involved in drug, peptide, and lipid export. They belong
to the subfamily C of the ATP-binding cassette (ABC)
superfamily of transport proteins. The ABCC subfamily
contains transporters with a diverse functional spectrum
that includes ion transport, cell surface receptor, and
toxin secretion activities. The MRP-like family, similar
to all ABC proteins, have a common four-domain core
structure constituted by two membrane-spanning domains,
each composed of six transmembrane (TM) helices, and two
nucleotide-binding domains (NBD). ABC transporters are a
subset of nucleotide hydrolases that contain a signature
motif, Q-loop, and H-loop/switch region, in addition to,
the Walker A motif/P-loop and Walker B motif commonly
found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 171
Score = 253 bits (648), Expect = 5e-81
Identities = 106/217 (48%), Positives = 131/217 (60%), Gaps = 46/217 (21%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
I+F N+ FSYP RP V L D+SL I+ G +++G SGSGKSTL LLLRLYDP +G+I
Sbjct: 1 IEFKNVSFSYPGRPKPV-LKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEI 59
Query: 460 LIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEAN 519
LIDGVD+++LD LR I V Q+P LFSGTI ENI
Sbjct: 60 LIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENI----------------------- 96
Query: 520 AYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYL 579
LSGGQ+QRIAIARAL++ IL+LDEATSALD E E L
Sbjct: 97 ----------------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEAL 134
Query: 580 VQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGK 616
+ A+ L +GKTV+ IAHRLSTIR +++I VLD G+
Sbjct: 135 ILEALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171
>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter;
Provisional.
Length = 588
Score = 265 bits (680), Expect = 2e-80
Identities = 178/621 (28%), Positives = 299/621 (48%), Gaps = 108/621 (17%)
Query: 71 TLAKSEKRKLTGAVCLL-LVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLML 129
+EKR L + + ++ ++ T A P G++ID I S K ++ L+
Sbjct: 12 QYLGAEKR-LGILLAVANVLLAAATFAEPILFGRIIDAI--SGKGDI--------FPLLA 60
Query: 130 VFVVGACCNFGRVYLMNVSAQSITKKLRERL------------FGSIISQETAYFDKHKT 177
+ FG L N+ A + + +RL F II A+ + +
Sbjct: 61 AWAG-----FG---LFNIIAGVLVARHADRLAHRRRLAVLTEYFERIIQLPLAWHSQRGS 112
Query: 178 GELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLALISLIIVPPVA-- 235
G ++ +D L G+ + F+ L++L+++ P+A
Sbjct: 113 GRALH------------TLLRGTDAL-------FGLWLEFMREHLATLVALVVLLPLALF 153
Query: 236 ----------GLAIVY---GKFVRKITRNVQDKL----ANAVQVAEERISNIRTVKSFSQ 278
L IVY V + T++ Q + + + I N+ V+S+++
Sbjct: 154 MNWRLSLVLVVLGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNR 213
Query: 279 EKLEMSHFNAKMDDLFELAKKE------ALAKGVFFGFTGLSGNAIILSVLYYGGVMVSY 332
+ E D+L LA + ALA + + +L++L G +V
Sbjct: 214 IEAETQALRDIADNL--LAAQMPVLSWWALASVL----NRAASTITMLAILVLGAALVQK 267
Query: 333 ETITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWE----------IMEREP 382
+ VG + +F+ +A + IG L + +N+ A +L E + +
Sbjct: 268 GQLRVGEVVAFVGFATLL---IGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDPPG 324
Query: 383 LISTSGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKS 442
I +KG ++F+++ FSY + V D+S + + G +++G +G+GKS
Sbjct: 325 AIDLGR-------VKGAVEFDDVSFSYDNSRQGV--EDVSFEAKPGQTVAIVGPTGAGKS 375
Query: 443 TLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVND 502
TL LL R++DPQ+G+ILIDG DI+ + LR I V Q+ LF+ +I +NI G D
Sbjct: 376 TLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPD 435
Query: 503 SSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKI 562
+ T ++ AA+ A A+ F+ +G+DT+VGERG LSGG++QR+AIARAL+K I
Sbjct: 436 A---TDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPI 492
Query: 563 LLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGS 622
L+LDEATSALD E E V++A+++L++G+T IAHRLST+R +++I V D G++VE GS
Sbjct: 493 LILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGS 552
Query: 623 YAHLIKNPNSMFNKLMKYQTM 643
+ L+ F L++ Q M
Sbjct: 553 FDELVAR-GGRFAALLRAQGM 572
>gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin
B, subfamily C. The ABC-transporter hemolysin B is a
central component of the secretion machinery that
translocates the toxin, hemolysin A, in a
Sec-independent fashion across both membranes of E.
coli. The hemolysin A (HlyA) transport machinery is
composed of the ATP-binding cassette (ABC) transporter
HlyB located in the inner membrane, hemolysin D (HlyD),
also anchored in the inner membrane, and TolC, which
resides in the outer membrane. HlyD apparently forms a
continuous channel that bridges the entire periplasm,
interacting with TolC and HlyB. This arrangement
prevents the appearance of periplasmic intermediates of
HlyA during substrate transport. Little is known about
the molecular details of HlyA transport, but it is
evident that ATP-hydrolysis by the ABC-transporter HlyB
is a necessary source of energy.
Length = 237
Score = 253 bits (647), Expect = 4e-80
Identities = 113/243 (46%), Positives = 167/243 (68%), Gaps = 7/243 (2%)
Query: 400 IDFNNIRFSYPSRPDA-VILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGK 458
I F ++RF Y +PD VIL+++SL+I+ G + ++G SGSGKSTL L+ R Y P+NG+
Sbjct: 1 ITFEHVRFRY--KPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGR 58
Query: 459 ILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEA 518
+L+DG D+ DP +LR Q+G V QE LF+ +I +NI + S+ + +I AAK A
Sbjct: 59 VLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALA-DPGMSMER--VIEAAKLA 115
Query: 519 NAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEY 578
A+ F+ + G+DTIVGE+G LSGGQ+QRIAIARALI +IL+ DEATSALD E+E+
Sbjct: 116 GAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEH 175
Query: 579 LVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLM 638
+ + + G+TV+ IAHRLST++ +++I V++KG+IVE GS+ L+ N ++ L
Sbjct: 176 AIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAE-NGLYAYLY 234
Query: 639 KYQ 641
+ Q
Sbjct: 235 QLQ 237
>gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster
assembly, permease and ATPase components
[Posttranslational modification, protein turnover,
chaperones].
Length = 497
Score = 261 bits (669), Expect = 6e-80
Identities = 144/447 (32%), Positives = 227/447 (50%), Gaps = 21/447 (4%)
Query: 196 TQNISDGLRSTVMVSAGVSMMFIISSKLALISLIIVPPVAGLA--IVYGKFVRKITR--- 250
T+ I LR + + + + + + L I+Y F ++
Sbjct: 49 TKGIETILRWILFNILPTLVEISLVAVILWRVYGWWFALTTLVTVILYLLFTVIVSDWRT 108
Query: 251 ------NVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAK 304
N D ANA + + + N TVK F E+ E ++ ++ + A K ++
Sbjct: 109 DFRRLMNNADSDANAKAI--DSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVHVSL 166
Query: 305 GVF-FGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSE 363
V FG T + + + ++ + V +TVG+L + + I + L Y E
Sbjct: 167 LVLNFGQTAIFSTGLRV-MMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYRE 225
Query: 364 LNKGLGACHRLWEIMEREPLISTS-GGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLS 422
+ + L +++++++ E +S + G + F N+ F+Y P ILN +S
Sbjct: 226 IRQALTDMEKMFDLLDVEAEVSDAPDAPPLWPVRLGAVAFINVSFAY--DPRRPILNGIS 283
Query: 423 LKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVS 482
I G +++G SG+GKST+ LL R YD +G I IDG DI+++ LR IG V
Sbjct: 284 FTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVP 343
Query: 483 QEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIML 542
Q+ LF+ TI NI YG D T ++ AA+ A + F+ G+DT VGERG+ L
Sbjct: 344 QDTVLFNDTIAYNIKYGRPD---ATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKL 400
Query: 543 SGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLST 602
SGG+KQR+AIAR ++K IL+LDEATSALD E +Q+A+ ++ G+T L IAHRLST
Sbjct: 401 SGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLST 460
Query: 603 IRKSNQICVLDKGKIVEIGSYAHLIKN 629
I +++I VLD G+IVE G++ L+
Sbjct: 461 IIDADEIIVLDNGRIVERGTHEELLAA 487
>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB
family. Type I protein secretion is a system in some
Gram-negative bacteria to export proteins (often
proteases) across both inner and outer membranes to the
extracellular medium. This is one of three proteins of
the type I secretion apparatus. Targeted proteins are
not cleaved at the N-terminus, but rather carry signals
located toward the extreme C-terminus to direct type I
secretion. This model is related to models TIGR01842 and
TIGR01846, and to bacteriocin ABC transporters that
cleave their substrates during export [Protein fate,
Protein and peptide secretion and trafficking, Cellular
processes, Pathogenesis].
Length = 694
Score = 258 bits (662), Expect = 8e-77
Identities = 135/419 (32%), Positives = 220/419 (52%), Gaps = 30/419 (7%)
Query: 213 VSMMFIISSKLALISLIIVPPVAGLAIVYGKFV-RKITRNVQDKLANAVQ---VAEERIS 268
+ ++ II L + L+ +P L ++ G + R ++R ++ + + Q V E +S
Sbjct: 277 LLVIAIIGGPLVWVPLVAIP----LILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLS 332
Query: 269 NIRTVKSFSQEKLEMSHFNAKMDDLF-ELAKKEALAKGVFFGFTGLSGNAIILSVLYYGG 327
+ T+K+ + E F + + LA+ ++ + T + L +
Sbjct: 333 GLETIKALNAE----GRFQRRWEQTVAALARSGLKSRFLSNLATNFAQFIQQLVSV---A 385
Query: 328 VMV--SYETITVGNLSSFLLYAAYIGIS-----IGGLSNFYSELNKGLGACHRLWEIMER 380
++V Y I+ G L+ L A + +G L+ + + A L E+M+
Sbjct: 386 IVVVGVYL-ISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQL 444
Query: 381 EPLISTSGGKFFSH-SLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGS 439
P+ G +F L+GEI+F N+ F+YP + L+++SL I+ G ++IG GS
Sbjct: 445 -PVERPEGTRFLHRPRLQGEIEFRNVSFAYPGQETPA-LDNVSLTIRPGEKVAIIGRIGS 502
Query: 440 GKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYG 499
GKSTL LLL LY P G +L+DGVDI+++DP LR IG V Q+P LF GT+ +NI G
Sbjct: 503 GKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALG 562
Query: 500 VNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKK 559
+I+ AA+ A FV +G D +GERG LSGGQ+Q +A+ARAL++
Sbjct: 563 A---PYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRD 619
Query: 560 SKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIV 618
ILLLDE TSA+D +E + +++ + GKT++ + HR S + ++I V+D G+IV
Sbjct: 620 PPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIV 678
>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter. This
model describes ABC-type bacteriocin transporter. The
amino terminal domain (pfam03412) processes the
N-terminal leader peptide from the bacteriocin while
C-terminal domains resemble ABC transporter membrane
protein and ATP-binding cassette domain. In general,
bacteriocins are agents which are responsible for
killing or inhibiting the closely related species or
even different strains of the same species. Bacteriocins
are usually encoded by bacterial plasmids. Bacteriocins
are named after the species and hence in literature one
encounters various names e.g., leucocin from Leuconostic
geldium; pedicocin from Pedicoccus acidilactici; sakacin
from Lactobacillus sake etc [Protein fate, Protein and
peptide secretion and trafficking, Protein fate, Protein
modification and repair, Transport and binding proteins,
Other].
Length = 708
Score = 251 bits (644), Expect = 3e-74
Identities = 173/585 (29%), Positives = 310/585 (52%), Gaps = 25/585 (4%)
Query: 52 PNNQKVGTKIKKSELKKLFTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTS 111
P + K K++ L K L +K+ + V ++ + I++A + L K+ID Y
Sbjct: 130 PTPEYKPIKEKENSLLKFIPLITRQKKLIVNIVIAAIIVTLISIAGSYYLQKIID-TYIP 188
Query: 112 DKKEMKEKMTSLSLLLMLVFVVGACCNFGRVYLMNVSAQSITKKLRERLFGSIISQETAY 171
K M + +S+ L++ +++ ++ +++L+NV Q ++ + + ++
Sbjct: 189 HK--MMGTLGIISIGLIIAYIIQQILSYIQIFLLNVLGQRLSIDIILSYIKHLFELPMSF 246
Query: 172 FDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLALISLIIV 231
F +TGE+++R + +S++ + +S L ++V G+ ++ + L L+SL+ +
Sbjct: 247 FSTRRTGEIVSRFTDASSIIDALASTILSLFLDMWILVIVGLFLVRQ-NMLLFLLSLLSI 305
Query: 232 PPVAGLAIVYGKFVRKITRNVQDKLANAVQVAE--ERISNIRTVKSFSQEKLEMSHFNAK 289
P A + I++ + K+ + ANAV + E ++ I T+KS + E S K
Sbjct: 306 PVYAVIIILFKRTFNKLNHDAMQ--ANAVLNSSIIEDLNGIETIKSLTSEAERYS----K 359
Query: 290 MDDLFE--LAKKEALAKGVFFGFTGLSGNAIILSV--LYYGGVMVSYETITVGNLSSFLL 345
+D F L K K + +IL+V L+ G +V +T+G L +F
Sbjct: 360 IDSEFGDYLNKSFKYQKADQGQQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNA 419
Query: 346 YAAYIGISIGGLSNFYSELNKGLGACHRLWEIMEREPLISTSGGKFFSHSLKGEIDFNNI 405
+Y + + N +L A +RL E+ + + ++L G+I N++
Sbjct: 420 LLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFINKKKRTELNNLNGDIVINDV 479
Query: 406 RFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVD 465
+SY + IL+D+SL I+ S T+++G SGSGKSTLA LL+ + ++G+IL++G
Sbjct: 480 SYSYGY--GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFS 537
Query: 466 IKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVI 525
+K++D LR I + QEP +FSG+I EN+L G + +V++ +I A + A +
Sbjct: 538 LKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKE--NVSQDEIWAACEIAEIKDDIE 595
Query: 526 DFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIE 585
+ G+ T + E G +SGGQKQRIA+ARAL+ SK+L+LDE+TS LD E + +
Sbjct: 596 NMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITE---KKIVN 652
Query: 586 KL--IEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIK 628
L ++ KT++ +AHRLS ++S++I VLD GKI+E GS+ L+
Sbjct: 653 NLLNLQDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLD 697
>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 569
Score = 245 bits (628), Expect = 3e-73
Identities = 161/555 (29%), Positives = 292/555 (52%), Gaps = 23/555 (4%)
Query: 84 VCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVY 143
V LL++ + + + P +G ++D + T + + + ++++ VV RV
Sbjct: 1 VALLIIIAMLQLIPPKVVGIIVDGV-TEQHMTTGQILMWIGTMVLIAVVVYLLRYVWRVL 59
Query: 144 LMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGL 203
L S Q + +LRE + + Q ++ +H+TG+L+ R + D V + + +
Sbjct: 60 LFGASYQ-LAVELREDFYRQLSRQHPEFYLRHRTGDLMARATNDVDRVVFAAGEGVLTLV 118
Query: 204 RSTVMVSAGVSMMFI-ISSKLALISLIIVPPVAGLAIVYGKFVRKITRNVQDKLANAVQV 262
S VM A + +M IS +L L++L+ +P +A + YG + + + Q ++
Sbjct: 119 DSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHERFKLAQAAFSSLNDR 178
Query: 263 AEERISNIRTVKSFSQEKLEMSHFNAKMDDL----FELAKKEALAKGVFFGFTGLSGNAI 318
+E +++IR +K+F E + + F A +D +A+ +A + G++
Sbjct: 179 TQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMAN--- 235
Query: 319 ILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIG---GLSNFYSELNKGLGACHRLW 375
L + G MV ++T+G L+SF++Y +G+ I L+ ++ + +G A R+
Sbjct: 236 -LLAIGGGSWMVVNGSLTLGQLTSFVMY---LGLMIWPMLALAWMFNIVERGSAAYSRIR 291
Query: 376 EIMEREPLISTSGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIG 435
++ P++ G + +GE+D N +F+YP D L +++ ++ G M + G
Sbjct: 292 AMLAEAPVV-KDGSEPVPEG-RGELDVNIRQFTYPQT-DHPALENVNFTLKPGQMLGICG 348
Query: 436 SSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYEN 495
+GSGKSTL L+ R +D G I + + +L RS++ VSQ P LFS T+ N
Sbjct: 349 PTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANN 408
Query: 496 ILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARA 555
I G D+ T+ +I H A+ A+ + ++ G+DT VGERG+MLSGGQKQRI+IARA
Sbjct: 409 IALGRPDA---TQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARA 465
Query: 556 LIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKG 615
L+ ++IL+LD+A SA+D E+ + + + EG+TV+ AHRLS + ++++I V+ G
Sbjct: 466 LLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHG 525
Query: 616 KIVEIGSYAHLIKNP 630
I + G++ L +
Sbjct: 526 HIAQRGNHDQLAQQS 540
>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of
bacteriocin exporters, subfamily C. Many
non-lantibiotic bacteriocins of lactic acid bacteria are
produced as precursors which have N-terminal leader
peptides that share similarities in amino acid sequence
and contain a conserved processing site of two glycine
residues in positions -1 and -2. A dedicated ATP-binding
cassette (ABC) transporter is responsible for the
proteolytic cleavage of the leader peptides and
subsequent translocation of the bacteriocins across the
cytoplasmic membrane.
Length = 220
Score = 232 bits (595), Expect = 1e-72
Identities = 98/221 (44%), Positives = 139/221 (62%), Gaps = 4/221 (1%)
Query: 398 GEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNG 457
G I+F N+ FSYP++ L+++SL I++G ++IG GSGKSTL LL LY P +G
Sbjct: 1 GRIEFRNVSFSYPNQEIPA-LDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSG 59
Query: 458 KILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKE 517
+L+DG DI++LDP LR IG V Q+ TLF GT+ +NI G + I+ AA+
Sbjct: 60 SVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLG---APLADDERILRAAEL 116
Query: 518 ANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENE 577
A FV NG D +GERG LSGGQ+Q +A+ARAL+ ILLLDE TSA+D +E
Sbjct: 117 AGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSE 176
Query: 578 YLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIV 618
++ + +L+ KT++ I HR S + ++I V+D G+IV
Sbjct: 177 ERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIV 217
>gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC
transporter, ATP-binding protein. Members of this
protein family are ABC transporter ATP-binding subunits,
part of a three-gene putative bacteriocin transport
operon. The other subunits include another ATP-binding
subunit (TIGR03796), which has an N-terminal leader
sequence cleavage domain, and an HlyD homolog
(TIGR03794). In a number of genomes, members of protein
families related to nitrile hydratase alpha subunit or
to nif11 have undergone paralogous family expansions,
with members possessing a putative bacteriocin cleavage
region ending with a classic Gly-Gly motif. Those sets
of putative bacteriocins, members of this protein family
and its partners TIGR03794 and TIGR03796, and
cyclodehydratase/docking scaffold fusion proteins of
thiazole/oxazole biosynthesis frequently show correlated
species distribution and co-clustering within many of
those genomes [Transport and binding proteins, Amino
acids, peptides and amines, Cellular processes,
Biosynthesis of natural products].
Length = 686
Score = 246 bits (629), Expect = 3e-72
Identities = 175/591 (29%), Positives = 280/591 (47%), Gaps = 88/591 (14%)
Query: 88 LVSSSITMAVPFALGKVID-VIYTSDKKEMKEKMTSLSLLLMLVFVVGACC--------- 137
L+ + + M VP A G +I I +D+ SLL+ + + A
Sbjct: 146 LLGTLLGMLVPIATGILIGTAIPDADR----------SLLVQIALALLAAAVGAAAFQLA 195
Query: 138 -NFGRVYLMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVT 196
+ + L S+ + +RL ++F ++ TG+L +R +SQ +
Sbjct: 196 QSLAVLRLETRMDASLQAAVWDRLL----RLPVSFFRQYSTGDLASRAMG----ISQ-IR 246
Query: 197 QNISD-GLRS--TVMVSA-GVSMMFIISSKLALISLIIVPPVAGLAIVYGKF-VRKITR- 250
+ +S L + + + + + +MF S KLAL+++ + + +V G VRK R
Sbjct: 247 RILSGSTLTTLLSGIFALLNLGLMFYYSWKLALVAVALALVAIAVTLVLGLLQVRKERRL 306
Query: 251 -NVQDKLAN-AVQVAEERISNIRTV-----------KSFSQE-KLEMSHFNAKMDDLFEL 296
+ K++ VQ+ IS +R K FS++ KLE+S ++++L +
Sbjct: 307 LELSGKISGLTVQLING-ISKLRVAGAENRAFARWAKLFSRQRKLELS--AQRIENLLTV 363
Query: 297 AKK--EALAKGVFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISI 354
L F LS+ G +++ T SF ++
Sbjct: 364 FNAVLPVLTSAALFAAAISLLGGAGLSL----GSFLAFNTA----FGSFSG-------AV 408
Query: 355 GGLSNFYSELNKGLGACHRLWEIMEREPLISTSGGKFFSHSLKGEIDFNNIRFSYPSRPD 414
LSN + + R I+E P K L G I+ + + F Y RPD
Sbjct: 409 TQLSNTLISILAVIPLWERAKPILEALP--EVDEAKTDPGKLSGAIEVDRVTFRY--RPD 464
Query: 415 A-VILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMY 473
+IL+D+SL+I+ G +++G SGSGKSTL LLL P++G + DG D+ LD
Sbjct: 465 GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQA 524
Query: 474 LRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKN---G 530
+R Q+G V Q L SG+I+ENI G +T + AA+ A G D + G
Sbjct: 525 VRRQLGVVLQNGRLMSGSIFENIAGGA----PLTLDEAWEAARMA---GLAEDIRAMPMG 577
Query: 531 FDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEG 590
T++ E G LSGGQ+QR+ IARAL++K +ILL DEATSALD + +V ++E+L
Sbjct: 578 MHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL--K 635
Query: 591 KTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLMKYQ 641
T + IAHRLSTIR +++I VLD G++V+ G+Y L+ +F +L + Q
Sbjct: 636 VTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELM-AREGLFAQLARRQ 685
>gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of
multidrug resistance-associated protein. The ABC
subfamily C is also known as MRP (multidrug
resistance-associated protein). Some of the MRP members
have five additional transmembrane segments in their
N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resistance lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate.
Length = 221
Score = 230 bits (588), Expect = 2e-71
Identities = 97/226 (42%), Positives = 138/226 (61%), Gaps = 7/226 (3%)
Query: 398 GEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNG 457
G+I+F N+ Y V L ++S I+ G ++G +GSGKS+L + L RL + +G
Sbjct: 1 GDIEFKNVSLRYRPNLPPV-LKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSG 59
Query: 458 KILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDS-SSVTKSDIIHAAK 516
ILIDGVDI ++ LRS+I + Q+P LFSGTI N+ D + ++ A +
Sbjct: 60 SILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNL-----DPFGEYSDEELWQALE 114
Query: 517 EANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAEN 576
FV G DT+V E G LS GQ+Q + +ARAL++KSKIL+LDEAT+++D E
Sbjct: 115 RVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPET 174
Query: 577 EYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGS 622
+ L+Q I + + TVLTIAHRL TI S++I VLDKG++VE S
Sbjct: 175 DALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220
>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd
biosynthesis, fused ATPase and permease components
[Energy production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 573
Score = 236 bits (605), Expect = 9e-70
Identities = 129/509 (25%), Positives = 231/509 (45%), Gaps = 43/509 (8%)
Query: 151 SITKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRS---TV 207
+ LR RLF + A ++++G+L+NR+ AD D L + V
Sbjct: 88 RVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADV------------DALDNLYLRV 135
Query: 208 MVSAGVSMMFIISSKLALISLIIVPPVAGLAI-----------VYGKFVRKITRNVQDKL 256
+ A V+++ I + L S +P L + ++ + RK ++
Sbjct: 136 IAPAVVALVLIAVVTIGL-SFFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGR 194
Query: 257 ANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAKGVFFGFTGLSGN 316
A + + + F E + A + +K+A G+ L
Sbjct: 195 AALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQARFTGLSDAILLLIAG 254
Query: 317 AIILSVLYYGGVMV-----SYETITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGAC 371
+++ +L + V + + L F A+ ++ G L + + +
Sbjct: 255 LLVIGLLLWMAAQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQ----HLGQVIASA 310
Query: 372 HRLWEIMEREPLISTSGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMT 431
RL +I++++P ++ + + ++ N+ F+YP + L + +L + G
Sbjct: 311 RRLNDILDQKPEVTFPDEQT--ATTGQALELRNVSFTYPGQQ-TKALKNFNLTLAQGEKV 367
Query: 432 SVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGT 491
+++G SGSGKSTL LL +DPQ G I ++GV+I LD LR I ++Q LFSGT
Sbjct: 368 AILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGT 427
Query: 492 IYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIA 551
+ +N+ D+S + + +G +T +GE G LSGG+++R+A
Sbjct: 428 LRDNLRLANPDASDEELWAALQQVGLEK---LLESAPDGLNTWLGEGGRRLSGGERRRLA 484
Query: 552 IARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICV 611
+ARAL+ + + LLDE T LD E V + + + EGKT+L + HRL + + ++I V
Sbjct: 485 LARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIV 544
Query: 612 LDKGKIVEIGSYAHLIKNPNSMFNKLMKY 640
LD GKI+E G++A L+ N N + +L +
Sbjct: 545 LDNGKIIEEGTHAELLAN-NGRYKRLYQL 572
>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein. This model
describes glucan exporter ATP binding protein in
bacteria. It belongs to the larger ABC transporter
superfamily with the characteristic ATP binding motif.
The In general, this protein is in some ways implicated
in osmoregulation and suggested to participate in the
export of glucan from the cytoplasm to periplasm. The
cyclic beta-1,2-glucan in the bactrerial periplasmic
space is suggested to confer the property of high
osmolority. It has also been demonstrated that mutants
in this loci have lost functions of virulence and
motility. It is unclear as to how virulence and
osmoadaptaion are related [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 585
Score = 236 bits (604), Expect = 1e-69
Identities = 174/582 (29%), Positives = 295/582 (50%), Gaps = 59/582 (10%)
Query: 82 GAVCLL-LVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFG 140
+ + + ++IT+A P G++ID I S K + +L L F V F
Sbjct: 22 LLIVIANITLAAITIAEPILFGRIIDAI--SSKSD-----VLPTLALWAGFGV-----FN 69
Query: 141 RVYLMNVS------AQSITKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQC 194
+ + V+ A L FG IIS ++ + T ++ +L+
Sbjct: 70 TIAYVLVAREADRLAHGRRATLLTEAFGRIISMPLSWHQQRGTSNALH------TLLRAT 123
Query: 195 VTQNISDGLRSTVM---VSAGVSMMFIISSKLAL---ISLIIVPPVAGLAIVY---GKFV 245
T GL M ++ V++ +I + A+ +S++++ L I+Y K V
Sbjct: 124 ETLF---GLWLEFMRQHLATFVALFLLIPTAFAMDWRLSIVLM----VLGILYILIAKLV 176
Query: 246 RKITRN----VQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEA 301
+ T+N V+ N + + ISN+ V S+++ + E S ++L A+
Sbjct: 177 MQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLS-AQYPV 235
Query: 302 LAKGVFF-GFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNF 360
L G ++ ++ +L G V+V ++VG + +F+ +A + IG L
Sbjct: 236 LDWWALASGLNRMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLL---IGRLDQM 292
Query: 361 YSELNKGLGACHRLWEIMEREPLISTSGGKFFSHSL---KGEIDFNNIRFSYPSRPDAVI 417
+ + A +L + + E + + L KG ++F +I F + + V
Sbjct: 293 SGFITQIFEARAKLEDFFDLEDSVFQREEPADAPELPNVKGAVEFRHITFEFANSSQGV- 351
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQ 477
D+S + ++G +++G +G+GK+TL LL R+YDP G+ILIDG+DI + LR
Sbjct: 352 -FDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKS 410
Query: 478 IGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGE 537
I +V Q+ LF+ +I ENI G + T ++ AAK A A+ F++ NG+DT+VGE
Sbjct: 411 IATVFQDAGLFNRSIRENIRLGREGA---TDEEVYEAAKAAAAHDFILKRSNGYDTLVGE 467
Query: 538 RGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIA 597
RG LSGG++QR+AIARA++K + IL+LDEATSALD E E V++AI+ L + +T IA
Sbjct: 468 RGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIA 527
Query: 598 HRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLMK 639
HRLST+R ++ + LD+G+++E GS+ LI + F KL++
Sbjct: 528 HRLSTVRNADLVLFLDQGRLIEKGSFQELI-QKDGRFYKLLR 568
>gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 592
Score = 236 bits (604), Expect = 1e-69
Identities = 159/585 (27%), Positives = 292/585 (49%), Gaps = 56/585 (9%)
Query: 66 LKKLFTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTS-LS 124
LK+L ++ L AV +L V+++ ++ P + ID + K + + + L+
Sbjct: 11 LKRLLAYGSPWRKPLGLAVLMLWVAAAAEVSGPLLISYFIDNMVA--KGNLPLGLVAGLA 68
Query: 125 LLLMLVFVVGACCNFGRVYLMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELINRI 184
+ + ++ A ++ + L N +A + ++LR + + + Q + FD G+LI+R+
Sbjct: 69 AAYVGLQLLAAGLHYAQSLLFNRAAVGVVQQLRTDVMDAALRQPLSAFDTQPVGQLISRV 128
Query: 185 SADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLALISLIIVPPVAGLAIVYGKF 244
+ DT ++ ++ LRS ++ A + MF + ++AL++++I P V + ++Y ++
Sbjct: 129 TNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRMALVAIMIFPAVLVVMVIYQRY 188
Query: 245 VRKITRNVQDKLANAVQVAEERISNIRTVKSFSQ-----EKLEM---SHFNAKMDDLFEL 296
I R V+ LA+ E I+ + ++ F Q E++ SH+ A+M
Sbjct: 189 STPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARM------ 242
Query: 297 AKKEALAKGVFFGFTGLSGNAIILSVLYYGGVMVSY-----ETITVGNLSSFLLYAAYIG 351
+ L F LS + S L G+++ + TI VG L +F+ Y +
Sbjct: 243 ---QTLRLDGFLLRPLLS----LFSALILCGLLMLFGFSASGTIEVGVLYAFISYLGRLN 295
Query: 352 ISIGGLSNFYSELNKGLGACHRLWEIMER---------EPLISTSGGKFFSHSLKGEIDF 402
+ L+ S L + + A R++E+M+ PL S G ID
Sbjct: 296 EPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYGNDDRPLQS------------GRIDI 343
Query: 403 NNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILID 462
+N+ F+Y R D ++L +++L + S +++G +GSGKSTLA LL+ Y G+I +D
Sbjct: 344 DNVSFAY--RDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLD 401
Query: 463 GVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYG 522
G + L LR + V Q+P + + T N+ G + +++ + A +
Sbjct: 402 GRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRD----ISEEQVWQALETVQLAE 457
Query: 523 FVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQS 582
+G T +GE+G LS GQKQ +A+AR L++ +IL+LDEAT+ +D+ E +Q
Sbjct: 458 LARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQ 517
Query: 583 AIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLI 627
A+ + E T++ IAHRLSTI +++ I VL +G+ VE G++ L+
Sbjct: 518 ALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLL 562
>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex. Unfortunately, the gene symbol
nomenclature adopted based on this operon in B. subtilis
assigns cydC to the third gene in the operon where this
gene is actually homologous to the E. coli cydD gene. We
have chosen to name all homologs in this family in
accordance with the precedence of publication of the E.
coli name, CydD.
Length = 529
Score = 226 bits (578), Expect = 2e-66
Identities = 141/546 (25%), Positives = 244/546 (44%), Gaps = 28/546 (5%)
Query: 77 KRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGAC 136
+R L L ++ + + +A + L +V+D + S + + E + +L L +++ +
Sbjct: 2 RRALALLALLGVLGALLIIAQAWLLARVVDGLI-SAGEPLAELLPALGALALVLLLRALL 60
Query: 137 CNFGRVYLMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGEL----INRISADTSLVS 192
+A ++ +LRERL ++ + + +GEL + + A +
Sbjct: 61 GWLQERAAARAAA-AVKSQLRERLLEAVAALGPRWLQGRPSGELATLALEGVEALDGYFA 119
Query: 193 QCVTQNISDGLRSTVMVSAGVSMMFIISSKLALISLIIVPPVAGLAIVYGKFVRKITRNV 252
+ + Q + + + + A V IS LI L+ P + I+ G + R
Sbjct: 120 RYLPQLVLAVI-VPLAILAAVFPQDWIS---GLILLLTAPLIPIFMILIGWAAQAAARKQ 175
Query: 253 QDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDL----FELAKKEALAKGV-- 306
L+ +R+ + T+K F + K + + ++ + + L+ V
Sbjct: 176 WAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIRRSSEEYRERTMRVLRIAFLSSAVLE 235
Query: 307 FFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSELNK 366
F ++ A+ + G + + V LL A + + L Y
Sbjct: 236 LFATLSVALVAVYIGFRLLAGDLDLATGLFV------LLLAPEFYLPLRQLGAQYHARAD 289
Query: 367 GLGACHRLWEIMEREPLISTSGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQ 426
G+ A L+ +++ P + ++F+ + +YP R A L +S +
Sbjct: 290 GVAAAEALFAVLDAAPRPLAGKAPVTAAPAP-SLEFSGVSVAYPGRRPA--LRPVSFTVP 346
Query: 427 SGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPT 486
G +++G SG+GKSTL LLL DP G I ++GV + + D R QI V Q P
Sbjct: 347 PGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPF 406
Query: 487 LFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQ 546
LF+GTI ENI D + ++I A + A FV G DT +GE G LSGGQ
Sbjct: 407 LFAGTIAENIRLARPD---ASDAEIREALERAGLDEFVAALPQGLDTPIGEGGAGLSGGQ 463
Query: 547 KQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKS 606
QR+A+ARA ++ + +LLLDE T+ LDAE E V A+ L +G+TVL + HRL+ +
Sbjct: 464 AQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQGRTVLLVTHRLALAALA 523
Query: 607 NQICVL 612
++I VL
Sbjct: 524 DRIVVL 529
>gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC
transporter, peptidase/ATP-binding protein. This
protein describes a multidomain ABC transporter subunit
that is one of three protein families associated with
some regularity with a distinctive family of putative
bacteriocins. It includes a bacteriocin-processing
peptidase domain at the N-terminus. Model TIGR03793
describes a conserved propeptide region for this
bacteriocin family, unusual because it shows obvious
homology a region of the enzyme nitrile hydratase up to
the classic Gly-Gly cleavage motif. This family is
therefore predicted to be a subunit of a bacteriocin
processing and export system characteristic to this
system that we designate NHLM, Nitrile Hydratase Leader
Microcin [Transport and binding proteins, Amino acids,
peptides and amines, Cellular processes, Biosynthesis of
natural products].
Length = 710
Score = 225 bits (577), Expect = 1e-64
Identities = 140/487 (28%), Positives = 243/487 (49%), Gaps = 49/487 (10%)
Query: 171 YFDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLALISLII 230
+F + G++ +R+ + V++ ++ ++ VM+ +M + L LI +
Sbjct: 244 FFAQRHAGDIASRVQLNDQ-VAEFLSGQLATTALDAVMLVFYALLMLLYDPVLTLIGIAF 302
Query: 231 VPPVAGLAIVYGKFV-RKI---TRNVQDKLANAVQVAEERISNIRTVKS-------FSQE 279
A + ++ + V R+ R +Q VA + +I T+K+ FS+
Sbjct: 303 ----AAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSR- 357
Query: 280 KLEMSHFNAKM-DDLFELAKKEALAKGVFFGFTGLSGNAIILSVLYYGGVMVSYETITVG 338
+ + AK+ + EL + + T L+ +A+IL V GG+ V +T+G
Sbjct: 358 ---WAGYQAKLLNAQQELGVLTQILGVLPTLLTSLN-SALILVV---GGLRVMEGQLTIG 410
Query: 339 NLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIME--REPLISTSGGKFFSHS- 395
L +F + + L F L + G +RL +++ +PL+
Sbjct: 411 MLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEP 470
Query: 396 ---LKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLY 452
L G ++ NI F Y S + ++ + SL +Q G +++G SGSGKST+A L+ LY
Sbjct: 471 SPRLSGYVELRNITFGY-SPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLY 529
Query: 453 DPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENI-LYGVNDSSSVTKSDI 511
P +G+IL DG+ +E+ L + + V Q+ LF GT+ +N+ L+ ++ +D+
Sbjct: 530 QPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLW----DPTIPDADL 585
Query: 512 IHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSA 571
+ A K+A + + G+D + E G LSGGQ+QR+ IARAL++ IL+LDEATSA
Sbjct: 586 VRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSA 645
Query: 572 LDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGS--------- 622
LD E E ++ + + G T + +AHRLSTIR ++I VL++GK+V+ G+
Sbjct: 646 LDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWAVGG 703
Query: 623 -YAHLIK 628
YA LI+
Sbjct: 704 AYARLIR 710
>gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 574
Score = 206 bits (527), Expect = 1e-58
Identities = 92/257 (35%), Positives = 150/257 (58%), Gaps = 6/257 (2%)
Query: 373 RLWEIMEREPLISTSGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTS 432
R+ EI E++P + T + + + + NN+ F+YP +P V L LSL+I++G +
Sbjct: 313 RINEITEQKPEV-TFPTTSTAAADQVSLTLNNVSFTYPDQPQPV-LKGLSLQIKAGEKVA 370
Query: 433 VIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTI 492
++G +G GKSTL LL R +DPQ G+IL++G I + LR I VSQ LFS T+
Sbjct: 371 LLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATL 430
Query: 493 YENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAI 552
+N+L ++S + + + +++ G + +GE G LSGG+++R+ I
Sbjct: 431 RDNLLLAAPNASD----EALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGI 486
Query: 553 ARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVL 612
ARAL+ + +LLLDE T LDAE E + + + + KTVL I HRL+ + + ++ICV+
Sbjct: 487 ARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVM 546
Query: 613 DKGKIVEIGSYAHLIKN 629
D G+I+E G++ L+
Sbjct: 547 DNGQIIEQGTHQELLAQ 563
>gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 588
Score = 202 bits (516), Expect = 5e-57
Identities = 84/275 (30%), Positives = 141/275 (51%), Gaps = 6/275 (2%)
Query: 357 LSNFYSELNKGLGACHRLWEIMEREPLISTSGGKFFSHSLKGEIDFNNIRFSYPSRPDAV 416
L FY + +GA L +E G K + + I+ ++ P
Sbjct: 307 LGTFYHAKAQAVGAAESLVTFLETPLAHPQQGEKELASNDPVTIEAEDLEILSPD--GKT 364
Query: 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRS 476
+ L+ + +G +++G SG+GK++L LL + P G + I+G++++ELDP R
Sbjct: 365 LAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLG-FLPYQGSLKINGIELRELDPESWRK 423
Query: 477 QIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVG 536
+ V Q P L GT+ +N+L G + + + A + A F+ G DT +G
Sbjct: 424 HLSWVGQNPQLPHGTLRDNVLLG---NPDASDEQLQQALENAWVSEFLPLLPQGLDTPIG 480
Query: 537 ERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTI 596
++ LS GQ QR+A+ARAL++ ++LLLDE T++LDA +E LV A+ +T L +
Sbjct: 481 DQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMV 540
Query: 597 AHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPN 631
H+L + + +QI V+ G+IV+ G YA L +
Sbjct: 541 THQLEDLAQWDQIWVMQDGQIVQQGDYAELSQAGG 575
>gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex.
Length = 530
Score = 191 bits (486), Expect = 2e-53
Identities = 114/466 (24%), Positives = 206/466 (44%), Gaps = 42/466 (9%)
Query: 155 KLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVS 214
LR R++ + Q A + + G+L+ R+ AD + + I + V+ +A V+
Sbjct: 87 ALRVRVYERLARQALAGRRRLRRGDLLGRLGADVDALQDLYVRVIVPAGVALVVGAAAVA 146
Query: 215 MMFIISSKLALI-------SLIIVPPVAGLAIVYGKFVRKITRNVQ-------DKLANAV 260
+ ++S ALI + + P V+ A R + + +L +A+
Sbjct: 147 AIAVLSVPAALILAAGLLLAGFVAPLVSLRA------ARAAEQALARLRGELAAQLTDAL 200
Query: 261 QVAEERISNIRTVKSFSQEKLEMSHFNAKMDD----LFELAKKEALAKGVFFGFTGLSGN 316
A E +++ + A++++ L ++ A A + T L+
Sbjct: 201 DGAAELVASGA-----------LPAALAQVEEADRELTRAERRAAAATALGAALTLLAAG 249
Query: 317 AIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWE 376
+L L+ GG V+ + L+ +L + L +L + A R+ E
Sbjct: 250 LAVLGALWAGGPAVADGRLAPVTLAVLVLLPLAAFEAFAALPAAAQQLTRVRAAAERIVE 309
Query: 377 IMEREPLISTSGGKFFSHSLKGEID--FNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVI 434
+++ ++ G+ ++ YP +L+ +SL + G +++
Sbjct: 310 VLDAAGPVAEGSAPAAGAVGLGKPTLELRDLSAGYP--GAPPVLDGVSLDLPPGERVAIL 367
Query: 435 GSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYE 494
G SGSGKSTL L L DP G++ +DGV + LD +R ++ +Q+ LF T+ E
Sbjct: 368 GPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVRRRVSVCAQDAHLFDTTVRE 427
Query: 495 NILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIAR 554
N+ D T ++ A + ++ +G DT++GE G LSGG++QR+A+AR
Sbjct: 428 NLRLARPD---ATDEELWAALERVGLADWLRALPDGLDTVLGEGGARLSGGERQRLALAR 484
Query: 555 ALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRL 600
AL+ + ILLLDE T LDAE + + + G+TV+ I H L
Sbjct: 485 ALLADAPILLLDEPTEHLDAETADELLEDLLAALSGRTVVLITHHL 530
>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of
PrtD, subfamily C. This family represents the ABC
component of the protease secretion system PrtD, a
60-kDa integral membrane protein sharing 37% identity
with HlyB, the ABC component of the alpha-hemolysin
secretion pathway, in the C-terminal domain. They export
degradative enzymes by using a type I protein secretion
system and lack an N-terminal signal peptide, but
contain a C-terminal secretion signal. The Type I
secretion apparatus is made up of three components, an
ABC transporter, a membrane fusion protein (MFP), and an
outer membrane protein (OMP). For the HlyA transporter
complex, HlyB (ABC transporter) and HlyD (MFP) reside in
the inner membrane of E. coli. The OMP component is
TolC, which is thought to interact with the MFP to form
a continuous channel across the periplasm from the
cytoplasm to the exterior. HlyB belongs to the family of
ABC transporters, which are ubiquitous, ATP-dependent
transmembrane pumps or channels. The spectrum of
transport substrates ranges from inorganic ions,
nutrients such as amino acids, sugars, or peptides,
hydrophobic drugs, to large polypeptides, such as HlyA.
Length = 173
Score = 175 bits (447), Expect = 9e-52
Identities = 76/215 (35%), Positives = 108/215 (50%), Gaps = 47/215 (21%)
Query: 404 NIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDG 463
N+ F YP + +L ++S I+ G ++IG SGSGKSTLA L+L L P +G++ +DG
Sbjct: 5 NVSFRYPGA-EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDG 63
Query: 464 VDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGF 523
DI + DP L +G + Q+ LFSG+I ENI
Sbjct: 64 ADISQWDPNELGDHVGYLPQDDELFSGSIAENI--------------------------- 96
Query: 524 VIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSA 583
LSGGQ+QR+ +ARAL +IL+LDE S LD E E + A
Sbjct: 97 ------------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQA 138
Query: 584 IEKL-IEGKTVLTIAHRLSTIRKSNQICVLDKGKI 617
I L G T + IAHR T+ +++I VL+ G++
Sbjct: 139 IAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173
>gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein
(MRP). This model describes multi drug
resistance-associated protein (MRP) in eukaryotes. The
multidrug resistance-associated protein is an integral
membrane protein that causes multidrug resistance when
overexpressed in mammalian cells. It belongs to ABC
transporter superfamily. The protein topology and
function was experimentally demonstrated by epitope
tagging and immunofluorescence. Insertion of tags in the
critical regions associated with drug efflux, abrogated
its function. The C-terminal domain seem to highly
conserved [Transport and binding proteins, Other].
Length = 1522
Score = 189 bits (482), Expect = 1e-50
Identities = 136/505 (26%), Positives = 246/505 (48%), Gaps = 40/505 (7%)
Query: 143 YLMNVSAQSI--TKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNIS 200
Y M VS I ++ L + L + + ++F++ +G L+NR S + V + I
Sbjct: 1025 YSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIK 1084
Query: 201 DGLRSTVMVSAGVSMMFIISSKLALISLIIVPPVAGLAIVYGKFVRKITRNVQDKLANAV 260
+ S V + + +I + ++II P L ++Y FV++ +L
Sbjct: 1085 MFMGSLFNV---IGALIVILLATPIAAVIIPP----LGLLY-FFVQRFYVASSRQLKRLE 1136
Query: 261 QVAE--------ERISNIRTVKSFSQEKLEMSHFNAKMDD-----LFELAKKEALAKGVF 307
V+ E + + +++F +++ + + K+D+ + LA +
Sbjct: 1137 SVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRWLAVRLE 1196
Query: 308 FGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSELNKG 367
GN I+L + ++S +++ G + + Y+ + + L SE+
Sbjct: 1197 C-----VGNCIVLFAALFA--VISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETN 1249
Query: 368 LGACHRLWEIMERE---PLISTSGGKFFSHSLKGEIDFNNIRFSYPSRPDA-VILNDLSL 423
+ A RL E E E P +G ++F N Y R D ++L +++
Sbjct: 1250 IVAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRY--REDLDLVLRHINV 1307
Query: 424 KIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQ 483
I G ++G +G+GKS+L + L R+ + G+I+IDG++I ++ LR +I + Q
Sbjct: 1308 TIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQ 1367
Query: 484 EPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLS 543
+P LFSG++ N+ + S + ++ A + A+ FV + D E G LS
Sbjct: 1368 DPVLFSGSLRMNL----DPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLS 1423
Query: 544 GGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTI 603
GQ+Q + +ARAL++K+KIL+LDEAT+A+D E + L+QS I E TVLTIAHRL+TI
Sbjct: 1424 VGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTI 1483
Query: 604 RKSNQICVLDKGKIVEIGSYAHLIK 628
++ VLDKG++ E G+ ++L++
Sbjct: 1484 MDYTRVIVLDKGEVAEFGAPSNLLQ 1508
Score = 103 bits (257), Expect = 1e-22
Identities = 70/247 (28%), Positives = 124/247 (50%), Gaps = 27/247 (10%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
I +N F++ +R LN ++ I G++ +V+G G GKS+L LL D G +
Sbjct: 637 ITVHNATFTW-ARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHV 695
Query: 460 LIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEAN 519
+ G + V Q+ + + ++ ENIL+G + + +
Sbjct: 696 HMKG-------------SVAYVPQQAWIQNDSLRENILFGKALNEKYYQQVL-------E 735
Query: 520 AYGFVIDFK---NGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAE- 575
A + D + +G T +GE+G+ LSGGQKQR+++ARA+ + I L D+ SA+DA
Sbjct: 736 ACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHV 795
Query: 576 NEYLVQSAI--EKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSM 633
+++ + I E +++ KT + + H +S + + + I V+ GKI E+GSY L++ +
Sbjct: 796 GKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQRDGAF 855
Query: 634 FNKLMKY 640
L Y
Sbjct: 856 AEFLRTY 862
>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1);
Provisional.
Length = 1466
Score = 189 bits (482), Expect = 1e-50
Identities = 182/626 (29%), Positives = 283/626 (45%), Gaps = 107/626 (17%)
Query: 70 FTLAKSEKRKLTGA--VCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLL 127
F + RKL G VC + ++ PF + V VI + + E + + L
Sbjct: 51 FKCLPASHRKLLGVSFVCATISGGTL----PFFV-SVFGVIMKN--MNLGENVNDIIFSL 103
Query: 128 MLVFVVGACCNFGRVYLMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELINRISAD 187
+L+ + +F + M+V I K L+ S+ Q+ + D + +L ++D
Sbjct: 104 VLIGIFQFILSFISSFCMDVVTTKILKTLKLEFLKSVFYQDGQFHDNNPGSKL----TSD 159
Query: 188 TSLVSQCVTQNISDGLRSTVMVSAGVSMMFIIS----SKLALISLIIVPPVAGLAIVYGK 243
+ V I + ++ ++I S ++L L + P + ++ K
Sbjct: 160 LDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLFKNARLTLCITCVFPLIYICGVICNK 219
Query: 244 FVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFN--AKMDDLFELAKK-- 299
V+ + N + + EE + IRTV S+ EK + FN K+ + L
Sbjct: 220 KVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKANFM 279
Query: 300 EALAKGVFFGFTGLS-------GNAIILSVL--------YYGGVMVSYETITVGNL-SSF 343
E+L G+ GF S G II+S L ++GG ++S I +G L S F
Sbjct: 280 ESLHIGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVIS---ILLGVLISMF 336
Query: 344 LLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMEREPLISTSGGKFFSHSLKGEIDFN 403
+L I+ E K L A + L+EI+ R+PL+ + +K +I F
Sbjct: 337 MLTIILPNIT---------EYMKSLEATNSLYEIINRKPLVENNDDGKKLKDIK-KIQFK 386
Query: 404 NIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILI-D 462
N+RF Y +R D I DL+ + G + +G SG GKST+ L+ RLYDP G I+I D
Sbjct: 387 NVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIIND 446
Query: 463 GVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENI---LYGVND----------------- 502
++K+++ + RS+IG VSQ+P LFS +I NI LY + D
Sbjct: 447 SHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQE 506
Query: 503 -------------------SSSVTKSDIIHAAKEANA---------------YGFVIDFK 528
S++ +++I K + FV
Sbjct: 507 NKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALP 566
Query: 529 NGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI 588
+ ++T+VG LSGGQKQRI+IARA+I+ KIL+LDEATS+LD ++EYLVQ I L
Sbjct: 567 DKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLK 626
Query: 589 --EGKTVLTIAHRLSTIRKSNQICVL 612
E + + IAHRLSTIR +N I VL
Sbjct: 627 GNENRITIIIAHRLSTIRYANTIFVL 652
Score = 169 bits (430), Expect = 5e-44
Identities = 160/592 (27%), Positives = 268/592 (45%), Gaps = 111/592 (18%)
Query: 143 YLMNVSAQSITKKLRERLFGSIISQETAYFD--KHKTGELINRISADTSLVSQCVTQNIS 200
Y NV + + K ++ RLF +I+ QE ++FD KH G L I+ D L +
Sbjct: 888 YYNNVIGEKVEKTMKRRLFENILYQEISFFDQDKHAPGLLSAHINRDVHL--------LK 939
Query: 201 DGLRSTVMVSAGVSMMFIISSKLALISLIIVPPVAG-LAIVYGKFVR------KITRN-- 251
GL + +++ ++F++S ++S P VA L Y F+R ++T N
Sbjct: 940 TGLVNNIVIFTHFIVLFLVSM---VMSFYFCPIVAAVLTGTYFIFMRVFAIRARLTANKD 996
Query: 252 VQDKLANAVQVA-----------------EERISNIRTVKSFSQEKLEMSHFNAKMDDLF 294
V+ K N +E N+ TV + E + +D
Sbjct: 997 VEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSN 1056
Query: 295 ELAKKEALAKGVFFGFTGLSGNAIILSVLY-YGGVMVSYETITVGNLSSFLLYAAYIGIS 353
+ K++ L + +GF+ S I S Y +G ++ TI V + L + G
Sbjct: 1057 KGQKRKTLVNSMLWGFSQ-SAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSY 1115
Query: 354 IGGLSNFYSELNKGLGACHRLWEIMEREPLIST--SGGKFFSHS--LKGEIDFNNIRFSY 409
G L + + + + + ++ R+ I +GG + +KG+I+ ++ F Y
Sbjct: 1116 AGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRY 1175
Query: 410 PSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILI-------- 461
SRP+ I DL+ S T+++G +GSGKST+ LL+R YD +N ++
Sbjct: 1176 ISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTND 1235
Query: 462 ------------DGVDIKELDPMYLRSQIGSVSQEPTLFSG------------------- 490
V +K ++ L + G ++ T+F
Sbjct: 1236 MTNEQDYQGDEEQNVGMKNVNEFSLTKE-GGSGEDSTVFKNSGKILLDGVDICDYNLKDL 1294
Query: 491 ----------------TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTI 534
+IYENI +G D+ T+ D+ A K A F+ N +DT
Sbjct: 1295 RNLFSIVSQEPMLFNMSIYENIKFGKEDA---TREDVKRACKFAAIDEFIESLPNKYDTN 1351
Query: 535 VGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKT 592
VG G LSGGQKQRIAIARAL+++ KILLLDEATS+LD+ +E L++ I + + KT
Sbjct: 1352 VGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKT 1411
Query: 593 VLTIAHRLSTIRKSNQICVLDK----GKIVEI-GSYAHLIKNPNSMFNKLMK 639
++TIAHR+++I++S++I V + G V+ G++ L+ + ++ K +K
Sbjct: 1412 IITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSVQDGVYKKYVK 1463
>gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1,
subfamily C. Domain 2 of NFT1 (New full-length MRP-type
transporter 1). NFT1 belongs to the MRP (multidrug
resistance-associated protein) family of ABC
transporters. Some of the MRP members have five
additional transmembrane segments in their N-terminus,
but the function of these additional membrane-spanning
domains is not clear. The MRP was found in the
multidrug-resisting lung cancer cell in which
p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions such as
glutathione, glucuronate, and sulfate.
Length = 207
Score = 168 bits (427), Expect = 2e-48
Identities = 82/226 (36%), Positives = 126/226 (55%), Gaps = 25/226 (11%)
Query: 398 GEIDFNNIRFSY-PSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQN 456
GEI+ N+ Y P P +L ++S K+++G ++G +G+GKSTL + L R + +
Sbjct: 5 GEIEVENLSVRYAPDLPP--VLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEE 62
Query: 457 GKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAK 516
GKI IDG+DI + LRS + + Q+PTLFSGTI N+ D + I+ A
Sbjct: 63 GKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNL-----DPFDEYSDEEIYGAL 117
Query: 517 EANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAEN 576
V E G+ LS GQ+Q + +ARAL+K+ ++L+LDEAT+++D
Sbjct: 118 R-----------------VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYAT 160
Query: 577 EYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGS 622
+ L+Q I + T+LTIAHRL TI ++I V+D G++ E
Sbjct: 161 DALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDH 206
>gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region.
This family represents a unit of six transmembrane
helices. Many members of the ABC transporter family
(pfam00005) have two such regions.
Length = 274
Score = 170 bits (433), Expect = 2e-48
Identities = 78/268 (29%), Positives = 133/268 (49%), Gaps = 1/268 (0%)
Query: 83 AVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRV 142
A+ LL+++ + + P LG+ +D + + + SL++LL+ V V+ G
Sbjct: 4 AILLLILAGATALVFPLLLGRFLDS-LIDGNGDERSSLISLAILLIAVGVLQGLLLQGSF 62
Query: 143 YLMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDG 202
YL Q I K+L L I+ ++FD + GEL +R++ D S + + +
Sbjct: 63 YLGERLGQRIRKRLFRALLRQILGLPMSFFDTNSVGELTSRLTNDVSKIRDGLGDKLGLF 122
Query: 203 LRSTVMVSAGVSMMFIISSKLALISLIIVPPVAGLAIVYGKFVRKITRNVQDKLANAVQV 262
+S V G +MF KL L+ L I+P + L+ V K +RK+ R Q A A V
Sbjct: 123 FQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVLAKKLRKLNRKEQKAYAKAGSV 182
Query: 263 AEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAKGVFFGFTGLSGNAIILSV 322
AEE +S IRTVK+F +E+ E+ ++ ++D + K+A+ G+ FG T L
Sbjct: 183 AEESLSGIRTVKAFGREEYELERYDKALEDAEKAGIKKAITAGLSFGITQLISYLSYALA 242
Query: 323 LYYGGVMVSYETITVGNLSSFLLYAAYI 350
L++G +V ++VG + +FL +
Sbjct: 243 LWFGAYLVISGGLSVGTVFAFLSLGLQL 270
>gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC
transporter, PrtD family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 544
Score = 173 bits (441), Expect = 5e-47
Identities = 112/345 (32%), Positives = 167/345 (48%), Gaps = 27/345 (7%)
Query: 286 FNAKMDDLFELAKKEALAKGVFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNL--SSF 343
F++K A A G+ + + VL G + IT G + S
Sbjct: 209 FHSKYLSAQSAASDRA---GMLSNLSKYFRIVLQSLVLGLGAYLAIDGEITPGMMIAGSI 265
Query: 344 LLYAAY--IGISIGGLSNFYSELNKGLGACHRLWEIMEREPLISTSGGKFFSHSL---KG 398
L+ A I +IGG F + A RL E++ P + + L +G
Sbjct: 266 LVGRALAPIDGAIGGWKQF----SGARQAYKRLNELLANYPS------RDPAMPLPEPEG 315
Query: 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGK 458
+ N+ P L +S +Q+G ++IG SGSGKSTLA L++ ++ P +G
Sbjct: 316 HLSVENVTIVPPG-GKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGS 374
Query: 459 ILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENIL-YGVNDSSSVTKSDIIHAAKE 517
+ +DG D+K+ D IG + Q+ LF GT+ ENI +G N II AAK
Sbjct: 375 VRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGEN----ADPEKIIEAAKL 430
Query: 518 ANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENE 577
A + ++ +G+DT++G G LSGGQ+QRIA+ARAL K+++LDE S LD E E
Sbjct: 431 AGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGE 490
Query: 578 YLVQSAIEKL-IEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIG 621
+ +AI+ L G TV+ I HR S + ++I VL G+I G
Sbjct: 491 QALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFG 535
>gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette
domain of the phosphate transport system. Phosphate
uptake is of fundamental importance in the cell
physiology of bacteria because phosphate is required as
a nutrient. The Pst system of E. coli comprises four
distinct subunits encoded by the pstS, pstA, pstB, and
pstC genes. The PstS protein is a phosphate-binding
protein located in the periplasmic space. PstA and PstC
are hydrophobic and they form the transmembrane portion
of the Pst system. PstB is the catalytic subunit, which
couples the energy of ATP hydrolysis to the import of
phosphate across cellular membranes through the Pst
system, often referred as ABC-protein. PstB belongs to
one of the largest superfamilies of proteins
characterized by a highly conserved adenosine
triphosphate (ATP) binding cassette (ABC), which is also
a nucleotide binding domain (NBD).
Length = 227
Score = 162 bits (413), Expect = 4e-46
Identities = 80/235 (34%), Positives = 125/235 (53%), Gaps = 24/235 (10%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD-----P 454
I+ ++ Y + L D+SL I G +T++IG SG GKSTL LL RL D P
Sbjct: 1 IELRDLNVYYGDK---HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAP 57
Query: 455 QNGKILIDGVDIKELD--PMYLRSQIGSVSQEPTLFSGTIYENILYGVN----DSSSVTK 508
G++L+DG DI +LD + LR ++G V Q+P F G+IY+N+ YG+
Sbjct: 58 DEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELD 117
Query: 509 SDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEA 568
+ A ++A + V D + LSGGQ+QR+ +ARAL + ++LLLDE
Sbjct: 118 ERVEEALRKAALWDEVKDRLHALG---------LSGGQQQRLCLARALANEPEVLLLDEP 168
Query: 569 TSALDAENEYLVQSAIEKLIEGKTVLTIAHRLS-TIRKSNQICVLDKGKIVEIGS 622
TSALD + ++ I +L + T++ + H + R +++ L G++VE G
Sbjct: 169 TSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGP 223
>gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase
and permease components [General function prediction
only].
Length = 580
Score = 170 bits (432), Expect = 2e-45
Identities = 84/222 (37%), Positives = 126/222 (56%), Gaps = 5/222 (2%)
Query: 397 KGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQN 456
+G + + + P + IL +S +Q+G +IG SGSGKSTLA LL+ ++ P +
Sbjct: 332 QGALSVERLTAAPPGQK-KPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTS 390
Query: 457 GKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAK 516
G + +DG D+++ D L IG + Q+ LF GTI ENI ++ +I AA+
Sbjct: 391 GSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADP---EKVIEAAR 447
Query: 517 EANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAEN 576
A + ++ G+DT +GE G LSGGQ+QRIA+ARAL +++LDE S LD+E
Sbjct: 448 LAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEG 507
Query: 577 EYLVQSAIEKL-IEGKTVLTIAHRLSTIRKSNQICVLDKGKI 617
E + +AI G TV+ IAHR S + ++I VL G+I
Sbjct: 508 EAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRI 549
>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD,
subfamily C. The CYD subfamily implicated in cytochrome
bd biogenesis. The CydC and CydD proteins are important
for the formation of cytochrome bd terminal oxidase of
E. coli and it has been proposed that they were
necessary for biosynthesis of the cytochrome bd quinol
oxidase and for periplasmic c-type cytochromes. CydCD
were proposed to determine a heterooligomeric complex
important for heme export into the periplasm or to be
involved in the maintenance of the proper redox state of
the periplasmic space. In Bacillus subtilis, the absence
of CydCD does not affect the presence of halo-cytochrome
c in the membrane and this observation suggests that
CydCD proteins are not involved in the export of heme in
this organism.
Length = 178
Score = 158 bits (402), Expect = 3e-45
Identities = 72/222 (32%), Positives = 113/222 (50%), Gaps = 44/222 (19%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
+ NN+ FSYP + + +L +LSL+++ G +++G SGSGKSTL LL PQ G+I
Sbjct: 1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEI 59
Query: 460 LIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEAN 519
+DGV + +L+ L S I ++Q P LF T+ N+
Sbjct: 60 TLDGVPVSDLEKA-LSSLISVLNQRPYLFDTTLRNNL----------------------- 95
Query: 520 AYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYL 579
G SGG++QR+A+AR L++ + I+LLDE T LD E
Sbjct: 96 -------------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQ 136
Query: 580 VQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIG 621
+ S I ++++ KT++ I H L+ I ++I L+ GKI+ G
Sbjct: 137 LLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178
>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding
cassette component of cobalt transport system. Domain I
of the ABC component of a cobalt transport family found
in bacteria, archaea, and eukaryota. The transition
metal cobalt is an essential component of many enzymes
and must be transported into cells in appropriate
amounts when needed. This ABC transport system of the
CbiMNQO family is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most of cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 211
Score = 157 bits (400), Expect = 1e-44
Identities = 76/220 (34%), Positives = 118/220 (53%), Gaps = 15/220 (6%)
Query: 402 FNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILI 461
N+ FSYP L+D+SL I+ G ++G +GSGKSTL LL L P +G++L+
Sbjct: 2 LKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLV 60
Query: 462 DGVDIKELDPMYLRSQIGSVSQEPT--LFSGTIYENILYGVNDSSSVTKSDIIHAAKEAN 519
DG D+ +L LR ++G V Q P F T+ E + +G+ + + + +I +EA
Sbjct: 61 DGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLE-NLGLPEEEIEERVEEAL 119
Query: 520 AYGFVIDFKNGFDTIVGERGI-MLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEY 578
+ ++ R LSGGQKQR+AIA L ILLLDE T+ LD
Sbjct: 120 ELVGLEGLRD--------RSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRR 171
Query: 579 LVQSAIEKLI-EGKTVLTIAHRLSTIRK-SNQICVLDKGK 616
+ ++KL EGKT++ + H L + + ++++ VL+ GK
Sbjct: 172 ELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211
>gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 339
Score = 161 bits (409), Expect = 2e-44
Identities = 85/253 (33%), Positives = 131/253 (51%), Gaps = 43/253 (16%)
Query: 400 IDFNNIRFSYPSRPDAVI--LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNG 457
I+ N+ ++ + L+D+SL+I G + +IG SG+GKSTL L+ L P +G
Sbjct: 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSG 61
Query: 458 KILIDGVDIKELDPMYL---RSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIH 513
+ +DG D+ L L R +IG + Q L S T++EN+ + + + + V K++I
Sbjct: 62 SVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPL-ELAGVPKAEIKQ 120
Query: 514 AAKE----------ANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKIL 563
E A+ Y LSGGQKQR+AIARAL KIL
Sbjct: 121 RVAELLELVGLSDKADRYP-----------------AQLSGGQKQRVAIARALANNPKIL 163
Query: 564 LLDEATSALDAENEYLVQSAIEKLIE-----GKTVLTIAHRLSTIRK-SNQICVLDKGKI 617
L DEATSALD E QS +E L + G T++ I H + +++ +++ VLD+G++
Sbjct: 164 LCDEATSALDPE---TTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRL 220
Query: 618 VEIGSYAHLIKNP 630
VE G+ + + NP
Sbjct: 221 VEEGTVSEVFANP 233
>gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of
multidrug resistance-associated protein, subfamily C.
This subfamily is also known as MRP (multidrug
resistance-associated protein). Some of the MRP members
have five additional transmembrane segments in their
N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resisting lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate.
Length = 204
Score = 156 bits (396), Expect = 5e-44
Identities = 73/233 (31%), Positives = 115/233 (49%), Gaps = 45/233 (19%)
Query: 400 IDFNNIRFSYPSRPD--AVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNG 457
I + F++ S + L D++L++ G + +++G GSGKS+L LL + +G
Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG 60
Query: 458 KILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKE 517
+ + I VSQEP + +GTI ENIL+G K
Sbjct: 61 SV-------------SVPGSIAYVSQEPWIQNGTIRENILFG----------------KP 91
Query: 518 ANA--YGFVID----------FKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLL 565
+ Y VI +G T +GE+GI LSGGQKQRI++ARA+ + I LL
Sbjct: 92 FDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLL 151
Query: 566 DEATSALDAE-NEYLVQSAI-EKLIEGKTVLTIAHRLSTIRKSNQICVLDKGK 616
D+ SA+DA ++ ++ I L+ KT + + H+L + ++QI VLD G+
Sbjct: 152 DDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204
>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional.
Length = 1622
Score = 165 bits (420), Expect = 1e-42
Identities = 151/537 (28%), Positives = 253/537 (47%), Gaps = 65/537 (12%)
Query: 136 CCNFGRVYLMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCV 195
Y + +S+ K+L + + GSI+ ++F + G +INR + D + + V
Sbjct: 968 LVTLLNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIINRFAKDLGDIDRNV 1027
Query: 196 T--QNISDG----LRSTVMVSAGVSMMFIISSKLALISLIIVPPVAGLAIVYGKFVRKIT 249
N+ G L ST ++ VS + S A++ L+++ A L Y R++
Sbjct: 1028 AVFVNMFLGQIFQLLSTFVLIGIVSTI----SLWAIMPLLVLFYGAYL--YYQSTAREVK 1081
Query: 250 RNVQDKLANA---VQVAE--ERISNIRTVKSFSQEKLEMSHFNAK-MDDLFELAKKEALA 303
R D + + Q E +S IR K++ + M+ N + MD+
Sbjct: 1082 R--LDSITRSPVYAQFGEALNGLSTIRAYKAYDR----MAEINGRSMDN----------- 1124
Query: 304 KGVFFGFTGLSGN---AIILSVLYYGGVMV----SYETITVGNLSS----------FLLY 346
+ F +S N AI L L GG+M+ S+ + G + L Y
Sbjct: 1125 -NIRFTLVNMSSNRWLAIRLETL--GGLMIWLTASFAVMQNGRAENQAAFASTMGLLLSY 1181
Query: 347 AAYIGISIGGLSNFYSELNKGLGACHRLWEIMERE---PLISTSGGKFFSHSLKGEIDFN 403
A I + + S L A R+ ++ PL+ + G I F
Sbjct: 1182 ALNITSLLTAVLRLASLAENSLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFE 1241
Query: 404 NIRFSYPSRPD-AVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILID 462
++ Y RP+ +L+ LS +I ++G +G+GKS++ L R+ + + G+ILID
Sbjct: 1242 DVVLRY--RPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILID 1299
Query: 463 GVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYG 522
G DI + M LR +G + Q P LFSGT+ N L N+ + D+ + + A+
Sbjct: 1300 GCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFN-LDPFNEHNDA---DLWESLERAHLKD 1355
Query: 523 FVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQS 582
+ G D V E G S GQ+Q +++ARAL+++SKIL+LDEAT+A+D + L+Q
Sbjct: 1356 VIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQK 1415
Query: 583 AIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLMK 639
I + + T+L IAHRL+TI ++I VLD G++VE + +L+ N S F+K+++
Sbjct: 1416 TIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSNEGSAFSKMVQ 1472
Score = 105 bits (263), Expect = 3e-23
Identities = 75/248 (30%), Positives = 126/248 (50%), Gaps = 34/248 (13%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTL--AMLLLRLYDPQNG 457
I N FS+ S+ + L++++L + GS+ +++GS+G GK++L AML
Sbjct: 615 ISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAML---------- 664
Query: 458 KILIDGVDIKELDPM-----YLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDII 512
EL P +R + V Q +F+ T+ +NIL+G S +
Sbjct: 665 ---------GELPPRSDASVVIRGTVAYVPQVSWIFNATVRDNILFG-----SPFDPERY 710
Query: 513 HAAKEANAYGFVIDFKNGFD-TIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSA 571
A + A +D G D T +GERG+ +SGGQKQR+++ARA+ S + + D+ SA
Sbjct: 711 ERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSA 770
Query: 572 LDAE-NEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNP 630
LDA + I+ + GKT + + ++L + + ++I ++ +G I E G+Y L N
Sbjct: 771 LDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSNN- 829
Query: 631 NSMFNKLM 638
+F KLM
Sbjct: 830 GPLFQKLM 837
>gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette
domain of methionine transporter. MetN (also known as
YusC) is an ABC-type transporter encoded by metN of the
metNPQ operon in Bacillus subtilis that is involved in
methionine transport. Other members of this system
include the MetP permease and the MetQ substrate binding
protein. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 233
Score = 150 bits (381), Expect = 1e-41
Identities = 82/252 (32%), Positives = 125/252 (49%), Gaps = 42/252 (16%)
Query: 400 IDFNNIRFSYPSRPDAVI-LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGK 458
I+ N+ + V L D+SL + G + +IG SG+GKSTL + L P +G
Sbjct: 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGS 61
Query: 459 ILIDGVDIKELDPMYL---RSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHA 514
+L+DG D+ L L R +IG + Q L S T++EN+ + + + V K++I
Sbjct: 62 VLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPL-EIAGVPKAEIEER 120
Query: 515 AKE----------ANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILL 564
E A+AY LSGGQKQR+ IARAL K+LL
Sbjct: 121 VLELLELVGLEDKADAYP-----------------AQLSGGQKQRVGIARALANNPKVLL 163
Query: 565 LDEATSALDAENEYLVQSAIEKLIE-----GKTVLTIAHRLSTIRK-SNQICVLDKGKIV 618
DEATSALD E QS + L + G T++ I H + +++ +++ V++KG++V
Sbjct: 164 CDEATSALDPET---TQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVV 220
Query: 619 EIGSYAHLIKNP 630
E G+ + NP
Sbjct: 221 EEGTVEEVFANP 232
>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport
systems, ATPase components [Inorganic ion transport and
metabolism / Coenzyme metabolism].
Length = 258
Score = 150 bits (381), Expect = 3e-41
Identities = 80/232 (34%), Positives = 122/232 (52%), Gaps = 21/232 (9%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
++ N+ F Y +P IL+DLS I G +T ++G +GSGKSTL L L P++G++
Sbjct: 3 LEVENLSFGYGGKP---ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEV 59
Query: 460 LIDGVDIKELDPMYLRSQIGSVSQEPTLFSG-TIYENILYG----VNDSSSVTKSDIIHA 514
L+DG DI L P L ++ V Q P+ G T+YE +L G + +K D
Sbjct: 60 LLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIV 119
Query: 515 AKEANAYGFVIDFKNGFDTIVGERGI-MLSGGQKQRIAIARALIKKSKILLLDEATSALD 573
+ G + +R + LSGG++QR+ IARAL +++ ILLLDE TS LD
Sbjct: 120 EEALELLG-LEHLA--------DRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLD 170
Query: 574 AENEYLVQSAIEKLIE--GKTVLTIAHRLS-TIRKSNQICVLDKGKIVEIGS 622
++ V + L G TV+ + H L+ R ++ + +L GKIV G+
Sbjct: 171 IAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGT 222
>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase
component [Amino acid transport and metabolism].
Length = 240
Score = 148 bits (376), Expect = 9e-41
Identities = 84/250 (33%), Positives = 125/250 (50%), Gaps = 40/250 (16%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
I+ N+ S+ D +L +SL ++ G + +IG SGSGKSTL L L +P +G I
Sbjct: 3 IEIKNLSKSFG---DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSI 59
Query: 460 LIDGVDI-KELDPMYLRSQIGSVSQEPTLFSG-TIYENILYG---VNDSSSVTKSDIIHA 514
+DG D+ + D + LR ++G V Q+ LF T+ EN+ V S K++
Sbjct: 60 TVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLS---KAEAREK 116
Query: 515 AKE----------ANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILL 564
A E A+AY LSGGQ+QR+AIARAL K++L
Sbjct: 117 ALELLEKVGLADKADAYPA-----------------QLSGGQQQRVAIARALAMDPKVML 159
Query: 565 LDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGS 622
DE TSALD E V ++ L EG T++ + H + R+ ++++ +D+GKI+E G
Sbjct: 160 FDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGP 219
Query: 623 YAHLIKNPNS 632
NP S
Sbjct: 220 PEEFFDNPKS 229
>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of
nickel/oligopeptides specific transporters. The ABC
transporter subfamily specific for the transport of
dipeptides, oligopeptides (OppD), and nickel (NikDE).
The NikABCDE system of E. coli belongs to this family
and is composed of the periplasmic binding protein NikA,
two integral membrane components (NikB and NikC), and
two ATPase (NikD and NikE). The NikABCDE transporter is
synthesized under anaerobic conditions to meet the
increased demand for nickel resulting from hydrogenase
synthesis. The molecular mechanism of nickel uptake in
many bacteria and most archaea is not known. Many other
members of this ABC family are also involved in the
uptake of dipeptides and oligopeptides. The oligopeptide
transport system (Opp) is a five-component ABC transport
composed of a membrane-anchored substrate binding
proteins (SRP), OppA, two transmembrane proteins, OppB
and OppC, and two ATP-binding domains, OppD and OppF.
Length = 228
Score = 147 bits (373), Expect = 2e-40
Identities = 80/239 (33%), Positives = 121/239 (50%), Gaps = 29/239 (12%)
Query: 400 IDFNNIRFSYPSRPDAV-ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGK 458
++ N+ S+P+ +V L+D+S I+ G ++G SGSGKSTLA +L L P +G
Sbjct: 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGS 61
Query: 459 ILIDGVDIKELDPM---YLRSQIGSVSQE------PTLFSGTIYENILYGVNDSSSVTKS 509
I+ DG D+ +L R +I V Q+ P + TI E I + ++K
Sbjct: 62 IIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRM---TIGEQIAEPLRIHGKLSKK 118
Query: 510 DIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEAT 569
+ A G + + ++ LSGGQ+QR+AIARAL K+L+ DE T
Sbjct: 119 EARKEAVLLLLVGVGLP-----EEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPT 173
Query: 570 SALDAENEYLVQSAIEKLIE------GKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIG 621
SALD VQ+ I L++ G T+L I H L + K ++++ V+ GKIVE G
Sbjct: 174 SALDV----SVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228
>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 309
Score = 148 bits (376), Expect = 5e-40
Identities = 82/242 (33%), Positives = 132/242 (54%), Gaps = 19/242 (7%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
I+F N+ Y ++ ++D++L I+ G +IG SGSGK+T ++ RL +P +G+I
Sbjct: 2 IEFENVSKRYGNKK---AVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEI 58
Query: 460 LIDGVDIKELDPMYLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKE- 517
LIDG DI +LDP+ LR +IG V Q+ LF T+ ENI V K I A E
Sbjct: 59 LIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIAT-VPKLLGWDKERIKKRADEL 117
Query: 518 ANAYGF-VIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAEN 576
+ G ++ + + LSGGQ+QR+ +ARAL ILL+DE ALD
Sbjct: 118 LDLVGLDPSEYADRYPH-------ELSGGQQQRVGVARALAADPPILLMDEPFGALDPIT 170
Query: 577 EYLVQ---SAIEKLIEGKTVLTIAHRLS-TIRKSNQICVLDKGKIVEIGSYAHLIKNPNS 632
+Q ++K + GKT++ + H + ++ +++I V+D G+IV+ + ++ NP +
Sbjct: 171 RKQLQEEIKELQKEL-GKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPAN 229
Query: 633 MF 634
F
Sbjct: 230 DF 231
>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding
protein-dependent transport systems. This class is
comprised of all BPD (Binding Protein Dependent) systems
that are largely represented in archaea and eubacteria
and are primarily involved in scavenging solutes from
the environment. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 178
Score = 143 bits (364), Expect = 7e-40
Identities = 74/223 (33%), Positives = 109/223 (48%), Gaps = 51/223 (22%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
++ N+ Y +LND+SL I++G + +++G SGSGKSTL + L +P +G I
Sbjct: 1 LELKNVSKRYG---QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSI 57
Query: 460 LIDGVDIKELDPMY--LRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAK 516
LIDG D+ +L+ LR +IG V Q+ LF T+ ENI G
Sbjct: 58 LIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG----------------- 100
Query: 517 EANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAEN 576
LSGGQ+QR+A+ARAL +LLLDE TSALD
Sbjct: 101 -------------------------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPIT 135
Query: 577 EYLVQSAIEKLIE--GKTVLTIAHRLSTIRK-SNQICVLDKGK 616
V++ ++ L G TV+ + H L + ++++ VL GK
Sbjct: 136 RREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178
>gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 241
Score = 145 bits (368), Expect = 9e-40
Identities = 90/244 (36%), Positives = 129/244 (52%), Gaps = 21/244 (8%)
Query: 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGK 458
EI+F + +S IL D+S+K + G++ +++G SG+GKSTL L+ RL DP G
Sbjct: 3 EIEFKEVSYS---SFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGS 59
Query: 459 ILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYG--VNDSSSVTKSDIIHAAK 516
ILIDGVDIK +D + LR +IG V Q+P LF GT+ +NI YG + +V +
Sbjct: 60 ILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVG 119
Query: 517 EANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAEN 576
Y D KN LSGG+ QR++IAR L ++LLLDE TSALD +
Sbjct: 120 LNKEYATR-DVKN------------LSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTS 166
Query: 577 EYLVQSAIEKLIE--GKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLIKNPNSM 633
+++ I KL TV+ I H + ++ + L+KG +VE NP +
Sbjct: 167 TEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQNE 226
Query: 634 FNKL 637
KL
Sbjct: 227 VTKL 230
>gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of
the osmoprotectant transporter. OpuCA is a the ATP
binding component of a bacterial solute transporter that
serves a protective role to cells growing in a
hyperosmolar environment. ABC (ATP-binding cassette)
transporter nucleotide-binding domain; ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition, to the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 242
Score = 145 bits (368), Expect = 9e-40
Identities = 85/240 (35%), Positives = 130/240 (54%), Gaps = 14/240 (5%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
I+F N+ Y AV N+L+L+I G +IG SGSGK+T ++ RL +P +G+I
Sbjct: 1 IEFENVTKRYGGGKKAV--NNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEI 58
Query: 460 LIDGVDIKELDPMYLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEA 518
IDG DI+E DP+ LR +IG V Q+ LF T+ ENI V K I A E
Sbjct: 59 FIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIAL-VPKLLKWPKEKIRERADE- 116
Query: 519 NAYGFV-IDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENE 577
V +D D E LSGGQ+QR+ +ARAL +LL+DE ALD
Sbjct: 117 -LLALVGLDPAEFADRYPHE----LSGGQQQRVGVARALAADPPLLLMDEPFGALDPITR 171
Query: 578 YLVQSAIEKLIE--GKTVLTIAHRL-STIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMF 634
+Q ++L + GKT++ + H + R +++I ++ G+IV++G+ ++++P + F
Sbjct: 172 DQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRSPANDF 231
>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 235
Score = 145 bits (367), Expect = 1e-39
Identities = 82/246 (33%), Positives = 128/246 (52%), Gaps = 28/246 (11%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
I+ N+ F YP L D+SL+I+ G +IG +GSGKSTL LL L P +G++
Sbjct: 4 IEAENLSFRYP--GRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEV 61
Query: 460 LIDGVDIK-ELDPMYLRSQIGSVSQEPT--LFSGTIYENILYGVNDSSSVTKSDIIHAAK 516
L+DG+D E + LR ++G V Q P LF T+ + + +G+ ++ + + +I
Sbjct: 62 LVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGL-ENLGLPREEIEERVA 120
Query: 517 EANAYGFVIDFKNGFDTIVGERGIM------LSGGQKQRIAIARALIKKSKILLLDEATS 570
EA +VG ++ LSGGQKQR+AIA L +ILLLDE T+
Sbjct: 121 EAL-------------ELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTA 167
Query: 571 ALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIRKSN-QICVLDKGKIVEIGSYAHLI 627
LD + + ++KL E GKT++ + H L + + ++ VLD GKI+ G A +
Sbjct: 168 GLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIF 227
Query: 628 KNPNSM 633
+ +
Sbjct: 228 NDAELL 233
>gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional.
Length = 1495
Score = 156 bits (395), Expect = 1e-39
Identities = 139/545 (25%), Positives = 248/545 (45%), Gaps = 68/545 (12%)
Query: 132 VVGACCNFGRV-------YLMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELINRI 184
VV A FG+V + + S+ K+L + + SI+ +F + TG +INR
Sbjct: 954 VVYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHTNPTGRVINRF 1013
Query: 185 SADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLALISLIIVPPVAGLAIVYGKF 244
S D + + V ++ + + + +++ +S+ ISL + P+ L + Y +
Sbjct: 1014 SKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGTVST----ISLWAIMPL--LILFYAAY 1067
Query: 245 ---------VRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAK-MDDLF 294
VR++ + + A +S+IR K++ + M+ N K MD+
Sbjct: 1068 LYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDR----MAKINGKSMDN-- 1121
Query: 295 ELAKKEALAKGVFFGFTGLSGN---AIILSVLYYGGVMV----SYETITVGNLSSFLLYA 347
+ F S N I L L GGVM+ ++ + GN + +A
Sbjct: 1122 ----------NIRFTLANTSSNRWLTIRLETL--GGVMIWLTATFAVLRNGNAENQAGFA 1169
Query: 348 AYIGISIGGLSNFYSELN----------KGLGACHRLWEIME---REPLISTSGGKFFSH 394
+ +G+ + N + L+ L + R+ ++ I +
Sbjct: 1170 STMGLLLSYTLNITTLLSGVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGW 1229
Query: 395 SLKGEIDFNNIRFSY-PSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD 453
+G I F ++ Y P P +L+ LS + V+G +G+GKS++ L R+ +
Sbjct: 1230 PSRGSIKFEDVHLRYRPGLPP--VLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVE 1287
Query: 454 PQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIH 513
+ G+I+ID D+ + LR + + Q P LFSGT+ NI + S +D+
Sbjct: 1288 LEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNI----DPFSEHNDADLWE 1343
Query: 514 AAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALD 573
A + A+ + G D V E G S GQ+Q +++ARAL+++SKIL+LDEAT+++D
Sbjct: 1344 ALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVD 1403
Query: 574 AENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSM 633
+ L+Q I + + T+L IAHRL+TI ++I VL G+++E S L+ S
Sbjct: 1404 VRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTSA 1463
Query: 634 FNKLM 638
F +++
Sbjct: 1464 FFRMV 1468
Score = 120 bits (303), Expect = 3e-28
Identities = 120/472 (25%), Positives = 222/472 (47%), Gaps = 39/472 (8%)
Query: 177 TGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFI-----ISSKLALISLIIV 231
+G++ N I+ D + + Q Q GL S VSM+ + ++S + L ++
Sbjct: 397 SGKVTNMITTDANALQQIAEQ--LHGLWSAPF-RIIVSMVLLYQQLGVASLFGSLILFLL 453
Query: 232 PPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMD 291
P+ L + + +RK+T+ V + E ++++ TVK ++ EK S +
Sbjct: 454 IPLQTLIV---RKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRN 510
Query: 292 DLFELAKKEALAKGVFFGFTGLSGNAI--ILSVLYYGGVMVSYETITVGNLSSFLLYAAY 349
+ +K L F N+I +++++ +G ++ +T + L A
Sbjct: 511 EELSWFRKAQL----LSAFNSFILNSIPVVVTLVSFGVFVLLGGDLTPARAFTSLSLFAV 566
Query: 350 IGISIGGLSNFYSELNKGLGACHRLWEIMEREPLISTSGGKFFSHSLKGEIDFNNIRFSY 409
+ + L N S++ + R+ E++ E I I N FS+
Sbjct: 567 LRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILAQNPPL--QPGAPAISIKNGYFSW 624
Query: 410 PSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKEL 469
S+ L+D++L+I GS+ +++G +G GK++L +L E
Sbjct: 625 DSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHA------------ET 672
Query: 470 DPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKN 529
+ +R + V Q +F+ T+ ENIL+G S +S+ A + A +D
Sbjct: 673 SSVVIRGSVAYVPQVSWIFNATVRENILFG-----SDFESERYWRAIDVTALQHDLDLLP 727
Query: 530 GFD-TIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLV-QSAIEKL 587
G D T +GERG+ +SGGQKQR+++ARA+ S I + D+ SALDA + V S ++
Sbjct: 728 GRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDE 787
Query: 588 IEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLMK 639
++GKT + + ++L + ++I ++ +G I E G++A L K+ S+F KLM+
Sbjct: 788 LKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSKS-GSLFKKLME 838
>gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 352
Score = 148 bits (375), Expect = 2e-39
Identities = 77/243 (31%), Positives = 133/243 (54%), Gaps = 18/243 (7%)
Query: 397 KGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQN 456
K ++ N+ S+ D ++D+SL I+ G +++G SG GK+TL ++ P +
Sbjct: 3 KPALEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSS 59
Query: 457 GKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAA 515
G+IL+DG DI ++ P R IG V Q LF T+ EN+ +G+ + K++I
Sbjct: 60 GEILLDGEDITDVPP-EKR-PIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARV 117
Query: 516 KEANAYGFVIDFKNGFDTIVGERGIM-LSGGQKQRIAIARALIKKSKILLLDEATSALDA 574
+EA + F +R LSGGQ+QR+A+ARAL+ + K+LLLDE SALDA
Sbjct: 118 EEALELVGLEGF--------ADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDA 169
Query: 575 ENEYLVQSAIEKLIE--GKTVLTIAH-RLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPN 631
+ ++ +++L G T + + H + + S++I V++ G+I ++G+ + + P
Sbjct: 170 KLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERPA 229
Query: 632 SMF 634
+ F
Sbjct: 230 TRF 232
>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase
component [Defense mechanisms].
Length = 293
Score = 145 bits (367), Expect = 5e-39
Identities = 71/238 (29%), Positives = 122/238 (51%), Gaps = 25/238 (10%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
I+ N+ Y D L+ +S +++ G + ++G +G+GK+TL +L L P +G+I
Sbjct: 5 IEVRNLTKKY--GGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEI 62
Query: 460 LIDGVDIKELDPMYLRSQIGSVSQEPTLFSG-TIYENI-----LYGVNDSSSVTKSDIIH 513
L+ G D+ + +P +R +IG V QEP+L+ T+ EN+ LYG+ S + I
Sbjct: 63 LVLGYDVVK-EPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGL--SKEEAEERIEE 119
Query: 514 AAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALD 573
+ G + ++ LSGG KQR++IA AL+ ++L+LDE TS LD
Sbjct: 120 LLELF-----------GLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLD 168
Query: 574 AENEYLVQSAIEKL--IEGKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHLIK 628
E+ + + +L G T+L H L +++ +L+ GKI+ G+ L +
Sbjct: 169 PESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKE 226
>gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the
sulfonylurea receptor SUR. The SUR domain 2. The
sulfonylurea receptor SUR is an ATP binding cassette
(ABC) protein of the ABCC/MRP family. Unlike other ABC
proteins, it has no intrinsic transport function,
neither active nor passive, but associates with the
potassium channel proteins Kir6.1 or Kir6.2 to form the
ATP-sensitive potassium (K(ATP)) channel. Within the
channel complex, SUR serves as a regulatory subunit that
fine-tunes the gating of Kir6.x in response to
alterations in cellular metabolism. It constitutes a
major pharmaceutical target as it binds numerous drugs,
K(ATP) channel openers and blockers, capable of up- or
down-regulating channel activity.
Length = 257
Score = 143 bits (363), Expect = 7e-39
Identities = 83/244 (34%), Positives = 136/244 (55%), Gaps = 5/244 (2%)
Query: 396 LKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQ 455
L GEI +++ Y + V L + I+ G + G +GSGKS+L++ R+ D
Sbjct: 16 LGGEIKIHDLCVRYENNLKPV-LKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIF 74
Query: 456 NGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAA 515
+GKI+IDG+DI +L LRS++ + Q+P LFSG+I N+ + T + A
Sbjct: 75 DGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNL----DPECKCTDDRLWEAL 130
Query: 516 KEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAE 575
+ A V G D +V E G S GQ+Q +ARA ++KS IL++DEAT+++D
Sbjct: 131 EIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMA 190
Query: 576 NEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFN 635
E ++Q + +TV+TIAHR+STI ++ + VL +G +VE + +L+ + +F
Sbjct: 191 TENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFA 250
Query: 636 KLMK 639
L++
Sbjct: 251 SLVR 254
>gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 253
Score = 141 bits (358), Expect = 4e-38
Identities = 84/254 (33%), Positives = 126/254 (49%), Gaps = 33/254 (12%)
Query: 394 HSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD 453
I+ ++ Y D L D++L I +T++IG SG GKSTL L R+ D
Sbjct: 2 TMKIPAIEVRDLNLYYG---DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMND 58
Query: 454 P-----QNGKILIDGVDI--KELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSV 506
G++L+DG +I ++D + LR ++G V Q+P F +IY+N+ YG+
Sbjct: 59 LIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIK 118
Query: 507 TK--SDIIHAA-KEANAYGFVID--FKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSK 561
K +I+ ++ K+A + V D K+ LSGGQ+QR+ IARAL K +
Sbjct: 119 DKELDEIVESSLKKAALWDEVKDRLHKSALG---------LSGGQQQRLCIARALAVKPE 169
Query: 562 ILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIA---HRLS-TIRKSNQICVLDKGK 616
+LL+DE TSALD + IE+LI E K TI H + R S+ G+
Sbjct: 170 VLLMDEPTSALDPIS----TLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGE 225
Query: 617 IVEIGSYAHLIKNP 630
+VE G + NP
Sbjct: 226 LVEFGPTDKIFTNP 239
>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the
carbohydrate and solute transporters-like. This family
is comprised of proteins involved in the transport of
apparently unrelated solutes and proteins specific for
di- and oligosaccharides and polyols. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 213
Score = 137 bits (347), Expect = 4e-37
Identities = 75/226 (33%), Positives = 126/226 (55%), Gaps = 17/226 (7%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
++ + +Y S L+DLSL ++ G +++G SG GK+TL L+ L P +G+I
Sbjct: 1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEI 57
Query: 460 LIDGVDIKELDPMYLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEA 518
LIDG D+ + P R+ IG V Q+ LF T+ ENI +G+ V K++I +E
Sbjct: 58 LIDGRDVTGVPP-ERRN-IGMVFQDYALFPHLTVAENIAFGLKLRG-VPKAEIRARVREL 114
Query: 519 NAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEY 578
G + ++ LSGGQ+QR+A+ARAL ++ +LLLDE SALDA+
Sbjct: 115 LELV-------GLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLRE 167
Query: 579 LVQSAIEKLIE--GKTVLTIAHRLS-TIRKSNQICVLDKGKIVEIG 621
++ +++L G T + + H + +++I V+++G+IV++G
Sbjct: 168 ELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of
the nitrate and sulfonate transporters. NrtD and SsuB
are the ATP-binding subunits of the bacterial ABC-type
nitrate and sulfonate transport systems, respectively.
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 220
Score = 135 bits (343), Expect = 2e-36
Identities = 71/234 (30%), Positives = 114/234 (48%), Gaps = 32/234 (13%)
Query: 400 IDFNNIRFSYPSRPDAV-ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGK 458
++ N+ +Y AV L D+SL ++ G +++G SG GKSTL ++ L P +G+
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60
Query: 459 ILIDGVDIKELDPMYLRSQIGSVSQEPTLFS-GTIYENILYGVNDSSSVTKSDIIHAAKE 517
+L+DG + P G V Q+ L T+ +N+ G+ + V K++ A+E
Sbjct: 61 VLVDGEPVTGPGP-----DRGYVFQQDALLPWLTVLDNVALGL-ELQGVPKAEARERAEE 114
Query: 518 ANAYGFVIDFKNGFDTIVGERGI------MLSGGQKQRIAIARALIKKSKILLLDEATSA 571
++ VG G LSGG +QR+A+ARAL +LLLDE SA
Sbjct: 115 L------LEL-------VGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSA 161
Query: 572 LDAENEYLVQSAIEKLIE--GKTVLTIAHRLS-TIRKSNQICVLDK--GKIVEI 620
LDA +Q + + GKTVL + H + + ++++ VL G+IV
Sbjct: 162 LDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAE 215
>gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit;
Provisional.
Length = 343
Score = 139 bits (352), Expect = 2e-36
Identities = 81/251 (32%), Positives = 130/251 (51%), Gaps = 40/251 (15%)
Query: 400 IDFNNIRFSYPSRPDAVI-LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGK 458
I+ NI +P + LN++SL I +G + VIG+SG+GKSTL + L P +G+
Sbjct: 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGR 61
Query: 459 ILIDGVDIKELDPMYLRS---QIGSVSQEPTLFSG-TIYENI-----LYGVNDSSSVTKS 509
+L+DG D+ L LR QIG + Q L S T+++N+ L G + +
Sbjct: 62 VLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARV 121
Query: 510 ----DIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLL 565
+++ + +A+ Y LSGGQKQR+AIARAL K+LL
Sbjct: 122 TELLELVGLSDKADRYP-----AQ------------LSGGQKQRVAIARALASNPKVLLC 164
Query: 566 DEATSALDAENEYLVQSAIEKLIE-----GKTVLTIAHRLSTIRK-SNQICVLDKGKIVE 619
DEATSALD +S +E L + G T++ I H + +++ +++ V+D G++VE
Sbjct: 165 DEATSALDPAT---TRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVE 221
Query: 620 IGSYAHLIKNP 630
G+ + + +P
Sbjct: 222 QGTVSEVFSHP 232
>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the
transporters involved in export of lipoprotein and
macrolide, and cell division protein. This family is
comprised of MJ0796 ATP-binding cassette,
macrolide-specific ABC-type efflux carrier (MacAB), and
proteins involved in cell division (FtsE), and release
of lipoproteins from the cytoplasmic membrane (LolCDE).
They are clustered together phylogenetically. MacAB is
an exporter that confers resistance to macrolides, while
the LolCDE system is not a transporter at all. An FtsE
null mutants showed filamentous growth and appeared
viable on high salt medium only, indicating a role for
FtsE in cell division and/or salt transport. The LolCDE
complex catalyzes the release of lipoproteins from the
cytoplasmic membrane prior to their targeting to the
outer membrane.
Length = 218
Score = 135 bits (342), Expect = 2e-36
Identities = 73/226 (32%), Positives = 109/226 (48%), Gaps = 16/226 (7%)
Query: 400 IDFNNIRFSYPSRPDAV-ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGK 458
I+ N+ +Y + V L +SL I+ G +++G SGSGKSTL +L L P +G+
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGE 60
Query: 459 ILIDGVDIKELDPM----YLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIH 513
+ +DG DI +L + R IG V Q L T EN+ + + V K +
Sbjct: 61 VRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLL-LAGVPKKERRE 119
Query: 514 AAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALD 573
A+E + + + E LSGGQ+QR+AIARAL KI+L DE T LD
Sbjct: 120 RAEELLER---VGLGDRLNHYPSE----LSGGQQQRVAIARALANDPKIILADEPTGNLD 172
Query: 574 AENEYLVQSAIEKL--IEGKTVLTIAHRLSTIRKSNQICVLDKGKI 617
+E V + +L G T++ + H +++I L GKI
Sbjct: 173 SETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218
>gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport
system involved in resistant to organic solvents. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 235
Score = 135 bits (343), Expect = 3e-36
Identities = 77/247 (31%), Positives = 125/247 (50%), Gaps = 33/247 (13%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
I+ + S+ R +L + L ++ G + ++IG SGSGKSTL L++ L P +G++
Sbjct: 1 IELRGLTKSFGGR---TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEV 57
Query: 460 LIDGVDI-----KELDPMYLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIH 513
LIDG DI EL LR ++G + Q LF T++EN+ + + + + +++ +I
Sbjct: 58 LIDGEDISGLSEAELYR--LRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIRE 115
Query: 514 AAKEANAYGFVIDFKNGFDTIVGERGIM------LSGGQKQRIAIARALIKKSKILLLDE 567
E ++ VG RG LSGG K+R+A+ARAL ++LL DE
Sbjct: 116 IVLEK------LEA-------VGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDE 162
Query: 568 ATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYA 624
T+ LD ++ I L + G T + + H L T +++I VL GKIV G+
Sbjct: 163 PTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPE 222
Query: 625 HLIKNPN 631
L + +
Sbjct: 223 ELRASDD 229
>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter
nucleotide-binding domain. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 157
Score = 131 bits (332), Expect = 9e-36
Identities = 63/217 (29%), Positives = 96/217 (44%), Gaps = 63/217 (29%)
Query: 402 FNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILI 461
N+ F Y R L+++SL +++G + +++G +GSGKSTL + L P +G+ILI
Sbjct: 2 IENLSFRYGGRT---ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILI 58
Query: 462 DGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAY 521
DG DI +L LR +IG V Q SG
Sbjct: 59 DGKDIAKLPLEELRRRIGYVPQ----LSG------------------------------- 83
Query: 522 GFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQ 581
G+R QR+A+ARAL+ +LLLDE TS LD + +
Sbjct: 84 --------------GQR---------QRVALARALLLNPDLLLLDEPTSGLDPASRERLL 120
Query: 582 SAIEKLI-EGKTVLTIAHRLSTIRK-SNQICVLDKGK 616
+ +L EG+TV+ + H ++++ VL GK
Sbjct: 121 ELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157
>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of
iron-siderophores, vitamin B12 and hemin transporters
and related proteins. ABC transporters, involved in the
uptake of siderophores, heme, and vitamin B12, are
widely conserved in bacteria and archaea. Only very few
species lack representatives of the siderophore family
transporters. The E. coli BtuCD protein is an ABC
transporter mediating vitamin B12 uptake. The two
ATP-binding cassettes (BtuD) are in close contact with
each other, as are the two membrane-spanning subunits
(BtuC); this arrangement is distinct from that observed
for the E. coli lipid flippase MsbA. The BtuC subunits
provide 20 transmembrane helices grouped around a
translocation pathway that is closed to the cytoplasm by
a gate region, whereas the dimer arrangement of the BtuD
subunits resembles the ATP-bound form of the Rad50 DNA
repair enzyme. A prominent cytoplasmic loop of BtuC
forms the contact region with the ATP-binding cassette
and represent a conserved motif among the ABC
transporters.
Length = 180
Score = 131 bits (331), Expect = 3e-35
Identities = 67/223 (30%), Positives = 104/223 (46%), Gaps = 49/223 (21%)
Query: 403 NNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILID 462
N+ Y R +L+DLSL I++G + ++G +G+GKSTL L L P +G+IL+D
Sbjct: 3 ENLSVGYGGR---TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLD 59
Query: 463 GVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYG 522
G D+ L P L +I V Q A +
Sbjct: 60 GKDLASLSPKELARKIAYVPQ------------------------------ALELLGLAH 89
Query: 523 FVIDFKNGFDTIVGERGIM-LSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQ 581
+R LSGG++QR+ +ARAL ++ ILLLDE TS LD ++ +
Sbjct: 90 LA------------DRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELL 137
Query: 582 SAIEKLI--EGKTVLTIAHRLS-TIRKSNQICVLDKGKIVEIG 621
+ +L GKTV+ + H L+ R ++++ +L G+IV G
Sbjct: 138 ELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180
>gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 226
Score = 132 bits (334), Expect = 4e-35
Identities = 76/233 (32%), Positives = 117/233 (50%), Gaps = 23/233 (9%)
Query: 400 IDFNNIRFSYPSRPDAV-ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD-PQNG 457
I+ N+ Y + V L D++L+I++G +++G SGSGKSTL + LL D P +G
Sbjct: 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTL-LNLLGGLDKPTSG 60
Query: 458 KILIDGVDIKELDPMYL----RSQIGSVSQEPTLFSG-TIYENI---LYGVNDSSSVTKS 509
++LI+G D+ +L L R +IG V Q L T+ EN+ L S+ K
Sbjct: 61 EVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKR 120
Query: 510 DIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEAT 569
+ ++ K E LSGGQ+QR+AIARALI KI+L DE T
Sbjct: 121 AAEELLEVLGLEDRLLKKK------PSE----LSGGQQQRVAIARALINNPKIILADEPT 170
Query: 570 SALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIRKSNQICVLDKGKIVEI 620
LD++ V + +L + GKT++ + H + ++++ L GKI E
Sbjct: 171 GNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEEE 223
>gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport
system, ATPase component [Inorganic ion transport and
metabolism].
Length = 248
Score = 132 bits (334), Expect = 7e-35
Identities = 72/233 (30%), Positives = 113/233 (48%), Gaps = 34/233 (14%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
++ + S+ +L D++L ++ G +++G SG GKSTL L+ L P +G++
Sbjct: 4 LEIEGVSKSFGGV---EVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEV 60
Query: 460 LIDGVDIKELDPMYLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEA 518
L+DG + P IG V QE L T+ +N+ G+ +K++ AKE
Sbjct: 61 LLDGRPVTGPGP-----DIGYVFQEDALLPWLTVLDNVALGLEL-RGKSKAEARERAKEL 114
Query: 519 NAYGFVIDFKNGFDTIVGERGI------MLSGGQKQRIAIARALIKKSKILLLDEATSAL 572
+VG G LSGG +QR+AIARAL + K+LLLDE AL
Sbjct: 115 LE-------------LVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGAL 161
Query: 573 DAENEYLVQSAIEKLIE--GKTVLTIAHRLS-TIRKSNQICVLDK--GKIVEI 620
DA +Q + +L E KTVL + H + + ++++ VL G+I E
Sbjct: 162 DALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIGEE 214
>gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to
organic solvents, ATPase component [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 263
Score = 131 bits (332), Expect = 1e-34
Identities = 76/251 (30%), Positives = 130/251 (51%), Gaps = 40/251 (15%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
I+ + S+ R VIL+ + L + G + +++G SGSGKSTL L+L L P G+I
Sbjct: 9 IEVRGVTKSFGDR---VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEI 65
Query: 460 LIDGVDIKEL---DPMYLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAA 515
LIDG DI +L + +R ++G + Q+ LFS T++EN+ + + + + + +S I
Sbjct: 66 LIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELV 125
Query: 516 KEANAYGFVIDFKNGFDTIVGERGIM-------LSGGQKQRIAIARALIKKSKILLLDEA 568
+VG RG LSGG ++R+A+ARA+ ++L LDE
Sbjct: 126 LMKLE-------------LVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEP 172
Query: 569 TSALDAENEYLVQSA-IEKLIE------GKTVLTIAHRLSTIRK-SNQICVLDKGKIVEI 620
TS LD + + I++LI G TV+ + H L ++ ++++ VL GK++
Sbjct: 173 TSGLDP-----ISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAE 227
Query: 621 GSYAHLIKNPN 631
G+ L+ + +
Sbjct: 228 GTPEELLASDD 238
>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the
drug resistance transporter and related proteins,
subfamily A. This family of ATP-binding proteins
belongs to a multi-subunit transporter involved in drug
resistance (BcrA and DrrA), nodulation, lipid transport,
and lantibiotic immunity. In bacteria and archaea, these
transporters usually include an ATP-binding protein and
one or two integral membrane proteins. Eukaryotic
systems of the ABCA subfamily display ABC domains that
are quite similar to this family. The ATP-binding domain
shows the highest similarity between all members of the
ABC transporter family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 173
Score = 128 bits (324), Expect = 2e-34
Identities = 63/221 (28%), Positives = 110/221 (49%), Gaps = 51/221 (23%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
I+ N+ Y + L+D+SL ++ G + ++G +G+GK+TL ++L L P +G+I
Sbjct: 1 IEVRNLSKRYGKKT---ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEI 57
Query: 460 LIDGVDIKELDPMYLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEA 518
+ G DIK+ +P ++ +IG + +EP+L+ T+ EN+
Sbjct: 58 KVLGKDIKK-EPEEVKRRIGYLPEEPSLYENLTVRENLKL-------------------- 96
Query: 519 NAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEY 578
SGG KQR+A+A+AL+ ++L+LDE TS LD E+
Sbjct: 97 ------------------------SGGMKQRLALAQALLHDPELLILDEPTSGLDPESRR 132
Query: 579 LVQSAIEKLI-EGKTVLTIAHRLSTI-RKSNQICVLDKGKI 617
+ +L EGKT+L +H L R +++ +L+ G+I
Sbjct: 133 EFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173
>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport
systems, contain duplicated ATPase [General function
prediction only].
Length = 539
Score = 135 bits (343), Expect = 6e-34
Identities = 76/255 (29%), Positives = 118/255 (46%), Gaps = 44/255 (17%)
Query: 404 NIRFSYPSRPDAVI--------LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQ 455
N+ Y SR + ++D+S ++ G ++G SGSGKSTLA +L L P
Sbjct: 285 NLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPS 344
Query: 456 NGKILIDGVDI----KELDPMYLRSQIGSVSQEPTLF-SGTIYENILYGVNDSSSVTKSD 510
+G I+ DG D+ EL + R Q+ +L T+ + +
Sbjct: 345 SGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDIL-----AEPLRIHGG 399
Query: 511 IIHAAKEANAYGFVIDFKNGFDTIVG-ERGIM------LSGGQKQRIAIARALIKKSKIL 563
A + A V + +VG + LSGGQ+QR+AIARAL + K+L
Sbjct: 400 GSGAERRAR----VAELL----ELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLL 451
Query: 564 LLDEATSALDAENEYLVQSAIEKLI------EGKTVLTIAHRLSTIRK-SNQICVLDKGK 616
+LDE SALD VQ+ + L+ G T L I+H L+ +R ++++ V+ G+
Sbjct: 452 ILDEPVSALDV----SVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGR 507
Query: 617 IVEIGSYAHLIKNPN 631
IVE G + +NP
Sbjct: 508 IVEEGPTEKVFENPQ 522
Score = 118 bits (297), Expect = 6e-28
Identities = 71/254 (27%), Positives = 123/254 (48%), Gaps = 36/254 (14%)
Query: 400 IDFNNIRFSYPSRPDAV-ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDP---- 454
++ N+ + + V + D+S +++ G + ++G SGSGKSTLA+ L+ L
Sbjct: 6 LEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRI 65
Query: 455 QNGKILIDGVDIKELDPMYLRSQIGS----VSQEP-TLFSGTIYENILYGVNDSSSVTKS 509
+G++++DG D+ L +R G + Q+P T N + + D + ++
Sbjct: 66 TSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSL------NPVMTIGDQ--IREA 117
Query: 510 DIIH-AAKEANAYGFVID-FKNGFDTIVG----ERGIM----LSGGQKQRIAIARALIKK 559
+H A A ++ + VG ER LSGG +QR+ IA AL K
Sbjct: 118 LRLHGKGSRAEARKRAVELLE-----QVGLPDPERRDRYPHQLSGGMRQRVMIAMALALK 172
Query: 560 SKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIRK-SNQICVLDKGK 616
K+L+ DE T+ALD + + ++ L G VL I H L + + ++++ V+ KG+
Sbjct: 173 PKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGE 232
Query: 617 IVEIGSYAHLIKNP 630
IVE G ++ NP
Sbjct: 233 IVETGPTEEILSNP 246
>gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding
protein. This model represents the ATP-binding protein
of a family of ABC transporters for inorganic phosphate.
In the model species Escherichia coli, a constitutive
transporter for inorganic phosphate, with low affinity,
is also present. The high affinity transporter that
includes this polypeptide is induced when extracellular
phosphate concentrations are low. The proteins most
similar to the members of this family but not included
appear to be amino acid transporters [Transport and
binding proteins, Anions].
Length = 247
Score = 128 bits (325), Expect = 9e-34
Identities = 77/227 (33%), Positives = 118/227 (51%), Gaps = 23/227 (10%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD-----PQNGKILIDGVDI--KELD 470
L +++L I +T++IG SG GKSTL L R+ D GK+L DG DI K++D
Sbjct: 17 LKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKID 76
Query: 471 PMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDI----IHAAKEANAYGFVID 526
+ LR ++G V Q+P F +IY+NI YG K ++ + K+A + V D
Sbjct: 77 VVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKD 136
Query: 527 --FKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAI 584
+ LSGGQ+QR+ IARAL + ++LLLDE TSALD ++ I
Sbjct: 137 RLHDSALG---------LSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELI 187
Query: 585 EKLIEGKTVLTIAHRLS-TIRKSNQICVLDKGKIVEIGSYAHLIKNP 630
++L + T++ + H + R S++ G++VE G + NP
Sbjct: 188 QELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFTNP 234
>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the
binding protein-dependent phosphonate transport system.
Phosphonates are a class of organophosphorus compounds
characterized by a chemically stable
carbon-to-phosphorus (C-P) bond. Phosphonates are
widespread among naturally occurring compounds in all
kingdoms of wildlife, but only prokaryotic
microorganisms are able to cleave this bond. Certain
bacteria such as E. coli can use alkylphosphonates as a
phosphorus source. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 241
Score = 128 bits (324), Expect = 1e-33
Identities = 79/237 (33%), Positives = 120/237 (50%), Gaps = 31/237 (13%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
I+ N+ +YP+ L D+SL I G ++IG SG+GKSTL L L +P +G +
Sbjct: 1 IEVENLSKTYPN--GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSV 58
Query: 460 LIDGVDIKELDPMYL---RSQIGSVSQEPTLFSG-TIYENILYGVNDSSS--------VT 507
LIDG DI +L L R QIG + Q+ L ++ EN+L G S
Sbjct: 59 LIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFP 118
Query: 508 KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDE 567
K + A G ++D +R LSGGQ+QR+AIARAL+++ K++L DE
Sbjct: 119 KEEKQRALAALERVG-LLDKAY-------QRADQLSGGQQQRVAIARALMQQPKLILADE 170
Query: 568 ATSALDAEN-----EYLVQSAIEKLIEGKTVLTIAHRLSTIRK-SNQICVLDKGKIV 618
++LD + + L + E EG TV+ H++ R+ +++I L G+IV
Sbjct: 171 PVASLDPASSRQVMDLLKRINRE---EGITVIVSLHQVDLAREYADRIVGLKDGRIV 224
>gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the
histidine and glutamine transporters. HisP and GlnQ are
the ATP-binding components of the bacterial periplasmic
histidine and glutamine permeases, respectively.
Histidine permease is a multi-subunit complex containing
the HisQ and HisM integral membrane subunits and two
copies of HisP. HisP has properties intermediate between
those of integral and peripheral membrane proteins and
is accessible from both sides of the membrane,
presumably by its interaction with HisQ and HisM. The
two HisP subunits form a homodimer within the complex.
The domain structure of the amino acid uptake systems is
typical for prokaryotic extracellular solute binding
protein-dependent uptake systems. All of the amino acid
uptake systems also have at least one, and in a few
cases, two extracellular solute binding proteins located
in the periplasm of Gram-negative bacteria, or attached
to the cell membrane of Gram-positive bacteria. The
best-studied member of the PAAT (polar amino acid
transport) family is the HisJQMP system of S.
typhimurium, where HisJ is the extracellular solute
binding proteins and HisP is the ABC protein.
Length = 213
Score = 126 bits (319), Expect = 2e-33
Identities = 70/211 (33%), Positives = 112/211 (53%), Gaps = 16/211 (7%)
Query: 414 DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDI--KELDP 471
D +L + L ++ G + +IG SGSGKSTL + L +P +G I+IDG+ + + +
Sbjct: 12 DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNI 71
Query: 472 MYLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNG 530
LR ++G V Q+ LF T+ ENI ++K++ A E + D +
Sbjct: 72 NELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADA 131
Query: 531 FDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAE--NEYLVQSAIEKL- 587
+ LSGGQ+QR+AIARAL K++L DE TSALD E E V ++ L
Sbjct: 132 YP-------AQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGE--VLDVMKDLA 182
Query: 588 IEGKTVLTIAHRLSTIRK-SNQICVLDKGKI 617
EG T++ + H + R+ ++++ +D G+I
Sbjct: 183 EEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213
>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 252
Score = 127 bits (322), Expect = 3e-33
Identities = 84/255 (32%), Positives = 121/255 (47%), Gaps = 33/255 (12%)
Query: 400 IDFNNIRFSYPSRPDAV-ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGK 458
+ N+ Y A LN++SL+I+ G ++G SGSGKSTLA LL L P +G
Sbjct: 4 LSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGS 63
Query: 459 ILIDGVDIKELDPM-YLRSQIGSVSQEPT-----LFS-GTIYENILYGVNDSSSVTKSDI 511
IL+DG + + V Q+P + G I L S ++ I
Sbjct: 64 ILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLR--PHGLSKSQQRI 121
Query: 512 IHAAKEANAYGFVIDFKNGFDTIVGERGIM-LSGGQKQRIAIARALIKKSKILLLDEATS 570
+ G +R LSGGQ+QRIAIARALI + K+L+LDE TS
Sbjct: 122 AELLDQV-----------GLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTS 170
Query: 571 ALDAENEYLVQSAIEKLIE------GKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSY 623
ALD VQ+ I L+ G T L I+H L+ + ++I V+D G+IVEIG
Sbjct: 171 ALDV----SVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPT 226
Query: 624 AHLIKNPNSMFNKLM 638
L+ +P+ + + +
Sbjct: 227 EELLSHPSHPYTREL 241
>gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components
[Carbohydrate transport and metabolism].
Length = 338
Score = 130 bits (328), Expect = 3e-33
Identities = 85/250 (34%), Positives = 135/250 (54%), Gaps = 37/250 (14%)
Query: 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLR----LYDP 454
E++ N+R S+ +L D++L I+ G ++G SG GKSTL LR L +P
Sbjct: 3 ELELKNVRKSFG---SFEVLKDVNLDIEDGEFVVLLGPSGCGKSTL----LRMIAGLEEP 55
Query: 455 QNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLF-SGTIYENILYGVNDSSSVTKSDIIH 513
+G+ILIDG D+ +L P + I V Q L+ T+YENI +G+ V K++I
Sbjct: 56 TSGEILIDGRDVTDLPP--EKRGIAMVFQNYALYPHMTVYENIAFGL-KLRGVPKAEIDK 112
Query: 514 AAKEANAYGFVIDFKNGFDTIVGERGIM------LSGGQKQRIAIARALIKKSKILLLDE 567
KE ++G ++ LSGGQ+QR+A+ARAL++K K+ LLDE
Sbjct: 113 RVKEVAK-------------LLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDE 159
Query: 568 ATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYA 624
S LDA+ L++S I+KL E G T + + H +++I V++ G+I ++G+
Sbjct: 160 PLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPL 219
Query: 625 HLIKNPNSMF 634
L + P ++F
Sbjct: 220 ELYERPANLF 229
>gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 127 bits (322), Expect = 5e-33
Identities = 71/237 (29%), Positives = 125/237 (52%), Gaps = 19/237 (8%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
I N+ FSYP+ + L ++S +I G +++G +GSGKST++ +L L PQ+G+I
Sbjct: 8 IKVENVSFSYPNS-ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEI 66
Query: 460 LIDGVDIKELDPMYLRSQIGSVSQEP-TLFSG-TIYENILYGV---NDSSSVTKSDIIHA 514
IDG+ I + + +R +IG + Q P F G T+ ++I +G+ K I
Sbjct: 67 KIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDL 126
Query: 515 AKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDA 574
AK+ + +D + LSGGQKQR+AIA L +I++ DE+TS LD
Sbjct: 127 AKKVGMEDY-LDKEPQN----------LSGGQKQRVAIASVLALNPEIIIFDESTSMLDP 175
Query: 575 ENEYLVQSAIEKLIE--GKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKN 629
+ + ++ + L + KT+++I H + ++++ V +GK++ G ++ N
Sbjct: 176 KGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNN 232
>gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the
molybdate transporter. Archaeal protein closely related
to ModC. ModC is an ABC-type transporter and the ATPase
component of a molybdate transport system that also
includes the periplasmic binding protein ModA and the
membrane protein ModB. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 235
Score = 124 bits (313), Expect = 3e-32
Identities = 74/221 (33%), Positives = 118/221 (53%), Gaps = 14/221 (6%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQ 477
L ++SL+++ G ++G +GSGKS L + P +GKIL++G DI L P +
Sbjct: 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPE--KRD 72
Query: 478 IGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVG 536
I V Q LF T+Y+NI YG+ V K +I E I G D ++
Sbjct: 73 ISYVPQNYALFPHMTVYKNIAYGLK-KRKVDKKEIERKVLE-------IAEMLGIDHLLN 124
Query: 537 ERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVL 594
+ LSGG++QR+AIARAL+ KILLLDE SALD + ++ ++K+ + G TVL
Sbjct: 125 RKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVL 184
Query: 595 TIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLIKNPNSMF 634
+ H ++++ ++ GK++++G + K P + F
Sbjct: 185 HVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKKPKNEF 225
>gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 223
Score = 122 bits (307), Expect = 1e-31
Identities = 67/189 (35%), Positives = 100/189 (52%), Gaps = 15/189 (7%)
Query: 414 DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMY 473
DA ILN++SL +++G ++ G SG GKSTL ++ L P +G +L +G D+ L P
Sbjct: 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEA 74
Query: 474 LRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAK--EANAYGFVIDFKNGF 531
R Q+ +Q P LF T+ +N+++ I + A A + F
Sbjct: 75 YRQQVSYCAQTPALFGDTVEDNLIF----------PWQIRNRRPDRAAALDLLARFALP- 123
Query: 532 DTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI--E 589
D+I+ + LSGG+KQRIA+ R L KILLLDE TSALD N+ ++ I + + +
Sbjct: 124 DSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQ 183
Query: 590 GKTVLTIAH 598
VL I H
Sbjct: 184 NVAVLWITH 192
>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the
metal-type transporters. This family includes
transporters involved in the uptake of various metallic
cations such as iron, manganese, and zinc. The ATPases
of this group of transporters are very similar to
members of iron-siderophore uptake family suggesting
that they share a common ancestor. The best
characterized metal-type ABC transporters are the
YfeABCD system of Y. pestis, the SitABCD system of
Salmonella enterica serovar Typhimurium, and the SitABCD
transporter of Shigella flexneri. Moreover other
uncharacterized homologs of these metal-type
transporters are mainly found in pathogens like
Haemophilus or enteroinvasive E. coli isolates.
Length = 213
Score = 121 bits (305), Expect = 2e-31
Identities = 59/226 (26%), Positives = 111/226 (49%), Gaps = 27/226 (11%)
Query: 402 FNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILI 461
++ SY P +L D+S +++ G +++G +G+GKSTL +L L P +G I +
Sbjct: 2 VEDLTVSYGGHP---VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRV 58
Query: 462 DGVDIKELDPMYLRSQIGSVSQEPTL---FSGTIYENILYG----VNDSSSVTKSDIIHA 514
G R +IG V Q ++ F ++ + +L G ++K+D
Sbjct: 59 FG-----KPLEKERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADK-AK 112
Query: 515 AKEANAYGFVIDFKNGFDTIVGERGI-MLSGGQKQRIAIARALIKKSKILLLDEATSALD 573
EA + + + R I LSGGQ+QR+ +ARAL++ +LLLDE + +D
Sbjct: 113 VDEALERVGLSELAD--------RQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVD 164
Query: 574 AENEYLVQSAIEKLI-EGKTVLTIAHRLSTIRKS-NQICVLDKGKI 617
+ + + + +L EG T+L + H L + + +++ +L++ +
Sbjct: 165 PKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRTVV 210
>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 122 bits (309), Expect = 3e-31
Identities = 79/233 (33%), Positives = 124/233 (53%), Gaps = 13/233 (5%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
I +I F YP L D+S + G +++G +GSGKSTLA LL L P+ G I
Sbjct: 6 IRVEHISFRYPDA-ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTI 64
Query: 460 LIDGVDIKELDPMYLRSQIGSVSQEP-TLFSG-TIYENILYGVNDSSSVTKSDIIHAAKE 517
+ G+ + E +R Q+G V Q P F G T+ +++ +G+ ++ V + +++ +
Sbjct: 65 TVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGL-ENIGVPREEMVERVDQ 123
Query: 518 ANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENE 577
A + DF N LSGGQKQR+AIA L + I++LDEATS LD
Sbjct: 124 ALRQVGMEDFLN-------REPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGR 176
Query: 578 YLVQSAIEKLIE--GKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIK 628
V + +L E G TVL+I H L +++++ V++KG+I+E G+ + K
Sbjct: 177 REVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFK 229
>gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system,
ATPase component [Inorganic ion transport and
metabolism].
Length = 258
Score = 121 bits (306), Expect = 5e-31
Identities = 78/239 (32%), Positives = 124/239 (51%), Gaps = 35/239 (14%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
I+ N+ +YP L D++L+I G M ++IG SG+GKSTL L L DP +G+I
Sbjct: 4 IEVKNLSKTYPG--GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEI 61
Query: 460 LIDGVDI-----KELDPMYLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKS---- 509
L +GV I KEL + R IG + Q+ L ++ EN+L G +S +S
Sbjct: 62 LFNGVQITKLKGKELRKL--RRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGL 119
Query: 510 -------DIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKI 562
+ A + ++D +R LSGGQ+QR+AIARAL+++ KI
Sbjct: 120 FSKEDKAQALDALERVG----ILDK-------AYQRASTLSGGQQQRVAIARALVQQPKI 168
Query: 563 LLLDEATSALDAENEYLVQSAIEKL--IEGKTVLTIAHRLSTIRK-SNQICVLDKGKIV 618
+L DE ++LD E+ V ++ + +G TV+ H++ +K +++I L G+IV
Sbjct: 169 ILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIV 227
>gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase
component [Inorganic ion transport and metabolism].
Length = 345
Score = 123 bits (312), Expect = 5e-31
Identities = 71/247 (28%), Positives = 127/247 (51%), Gaps = 26/247 (10%)
Query: 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGK 458
I NN++ + L+D+SL I+SG + +++G SG+GKSTL ++ L P G+
Sbjct: 2 SIRINNVKKRFG---AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGR 58
Query: 459 ILIDGVDIKELDPMYLRS-QIGSVSQEPTLFSG-TIYENILYG-----VNDSSSVTKSDI 511
I ++G + ++ + +R ++G V Q LF T+ +NI +G S + ++ +
Sbjct: 59 IRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARV 118
Query: 512 IHAAKEANAYGFVIDFKNGFDTIVGERGIM-LSGGQKQRIAIARALIKKSKILLLDEATS 570
+ G +R LSGGQ+QR+A+ARAL + K+LLLDE
Sbjct: 119 EELLRLVQLEGL------------ADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFG 166
Query: 571 ALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLI 627
ALDA+ ++ + KL + G T + + H + ++++ VL++G+I ++G +
Sbjct: 167 ALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVY 226
Query: 628 KNPNSMF 634
+P S F
Sbjct: 227 DHPASRF 233
>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine
transporter. PotA is an ABC-type transporter and the
ATPase component of the
spermidine/putrescine-preferential uptake system
consisting of PotA, -B, -C, and -D. PotA has two domains
with the N-terminal domain containing the ATPase
activity and the residues required for homodimerization
with PotA and heterdimerization with PotB. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 232
Score = 120 bits (303), Expect = 7e-31
Identities = 80/239 (33%), Positives = 129/239 (53%), Gaps = 17/239 (7%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
I+ N+ Y V L+ +SL I+ G +++G SG GK+TL L+ P +G+I
Sbjct: 1 IELENVSKFYG---GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEI 57
Query: 460 LIDGVDIKELDPMYLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEA 518
L+DG DI L P + R + +V Q LF T++ENI +G+ + K++I + A
Sbjct: 58 LLDGKDITNLPP-HKR-PVNTVFQNYALFPHLTVFENIAFGLR-LKKLPKAEI--KERVA 112
Query: 519 NAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEY 578
A V + + LSGGQ+QR+AIARAL+ + K+LLLDE ALD +
Sbjct: 113 EALDLV-----QLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRK 167
Query: 579 LVQSAIEKLIE--GKTVLTIAHRLS-TIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMF 634
+Q +++L + G T + + H + S++I V++KGKI +IG+ + + P + F
Sbjct: 168 DMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEEPANRF 226
>gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding
cassette component of cobalt transport system. Domain
II of the ABC component of a cobalt transport family
found in bacteria, archaea, and eukaryota. The
transition metal cobalt is an essential component of
many enzymes and must be transported into cells in
appropriate amounts when needed. The CbiMNQO family ABC
transport system is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 205
Score = 119 bits (300), Expect = 9e-31
Identities = 73/219 (33%), Positives = 110/219 (50%), Gaps = 21/219 (9%)
Query: 404 NIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDG 463
NI FSY + IL+DLSL + +G + ++ G +G+GK+TLA +L L +G IL++G
Sbjct: 4 NISFSYKKGTE--ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNG 61
Query: 464 VDIKELDPMYLRSQIGSVSQEPT--LFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAY 521
IK + R IG V Q+ LF+ ++ E +L G K+ + Y
Sbjct: 62 KPIKAKE---RRKSIGYVMQDVDYQLFTDSVREELLLG-LKELDAGNEQAETVLKDLDLY 117
Query: 522 GFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQ 581
++ LSGGQKQR+AIA AL+ +L+ DE TS LD +N V
Sbjct: 118 AL--KERHPLS---------LSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVG 166
Query: 582 SAIEKLI-EGKTVLTIAHRLSTIRK-SNQICVLDKGKIV 618
I +L +GK V+ I H + K +++ +L G IV
Sbjct: 167 ELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205
>gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component
[Coenzyme metabolism].
Length = 231
Score = 119 bits (301), Expect = 1e-30
Identities = 76/233 (32%), Positives = 117/233 (50%), Gaps = 31/233 (13%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
+ +++RFSY P L + +G + +++G SG+GKSTL L+ P +G+I
Sbjct: 2 LALDDVRFSYGHLP-----MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEI 56
Query: 460 LIDGVDIKELDPMYLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSD---IIHAA 515
LI+GVD P R + + QE LF+ T+ +NI G++ + + AA
Sbjct: 57 LINGVDHTASPP-AERP-VSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAA 114
Query: 516 KEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALD-- 573
+ GF+ + GE LSGGQ+QR+A+AR L+++ ILLLDE SALD
Sbjct: 115 AQVGLAGFL-------KRLPGE----LSGGQRQRVALARCLVREQPILLLDEPFSALDPA 163
Query: 574 --AENEYLV-QSAIEKLIEGKTVLTIAHRLSTIRKS-NQICVLDKGKIVEIGS 622
AE LV Q E+ T+L + H + +++ LD G+I GS
Sbjct: 164 LRAEMLALVSQLCDER---KMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGS 213
>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 120 bits (302), Expect = 1e-30
Identities = 73/242 (30%), Positives = 127/242 (52%), Gaps = 16/242 (6%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD-----P 454
I+ N Y + + ++++KI +T++IG SG GK+TL + R+ D
Sbjct: 4 IEIENFSAYYG---EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFR 60
Query: 455 QNGKILIDGVDIKE--LDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDII 512
GKI G DI + LD R ++G V Q+PT F +IY+N+ +G +K +
Sbjct: 61 VEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLD 120
Query: 513 HAAKEANAYGFVID-FKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSA 571
+E+ + D K+ + + G LSGGQ+QR+ IARAL + +++LLDE TSA
Sbjct: 121 RIVEESLKKAALWDEVKSELN----KPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSA 176
Query: 572 LDAENEYLVQSAIEKLIEGKTVLTIAHRLS-TIRKSNQICVLDKGKIVEIGSYAHLIKNP 630
LD ++ +E+L E T++ + H + IR ++ I + +G+++E G +++ P
Sbjct: 177 LDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIVERP 236
Query: 631 NS 632
+
Sbjct: 237 KN 238
>gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter. ABC transporters for a large
family of proteins responsible for translocation of a
variety of compounds across biological membranes. ABC
transporters are the largest family of proteins in many
completely sequenced bacteria. ABC transporters are
composed of two copies of this domain and two copies of
a transmembrane domain pfam00664. These four domains may
belong to a single polypeptide as in human CFTR, or
belong in different polypeptide chains.
Length = 119
Score = 115 bits (290), Expect = 1e-30
Identities = 53/131 (40%), Positives = 69/131 (52%), Gaps = 14/131 (10%)
Query: 442 STLAMLLLRLYDPQNGKILIDGVDIKELDPM-YLRSQIGSVSQEPTLF-SGTIYENILYG 499
STL L+ L P +G IL+DG D L LR +IG V Q+P LF T+ EN+ +G
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 500 VNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKK 559
+ D + A + F+ E LSGGQKQR+AIARAL+KK
Sbjct: 61 LRDKE--ADARAEEALERVGLPDFLDR----------EPVGTLSGGQKQRVAIARALLKK 108
Query: 560 SKILLLDEATS 570
K+LLLDE T+
Sbjct: 109 PKLLLLDEPTA 119
>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein;
Reviewed.
Length = 240
Score = 119 bits (299), Expect = 2e-30
Identities = 82/240 (34%), Positives = 127/240 (52%), Gaps = 19/240 (7%)
Query: 400 IDFNNI--RFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNG 457
I+F N+ F +L+++ L I G + +IG SGSGKSTL + +L + +G
Sbjct: 2 IEFKNVSKHFG-----PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSG 56
Query: 458 KILIDGVDIK--ELDPMYLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHA 514
+++DG+ + ++D +R + G V Q+ LF T EN+++G +K +
Sbjct: 57 DLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQ 116
Query: 515 AKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDA 574
A+E A K G LSGGQ+QR+AIARAL K K++L DE TSALD
Sbjct: 117 ARELLA-------KVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDP 169
Query: 575 ENEYLVQSAIEKLI-EGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLIKNPNS 632
E + V ++ L EG T++ + H + K ++++ +DKG+I E G LIKNP S
Sbjct: 170 ELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKNPPS 229
>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 282
Score = 120 bits (302), Expect = 2e-30
Identities = 81/244 (33%), Positives = 134/244 (54%), Gaps = 23/244 (9%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAML---LLRLYDPQN 456
++F ++ F+YP LND+S I GS T++IG +GSGKST++ L LL D N
Sbjct: 6 VEFKHVSFTYPDSKKPA-LNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPN 64
Query: 457 GKILIDGVDIKELDPMYLRSQIGSVSQEP-TLFSG-TIYENILYGVNDSSSVTKSDIIHA 514
KI +DG+ + +R ++G V Q P F G T+ +++ +G+ ++ +V + ++I
Sbjct: 65 SKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGL-ENRAVPRPEMIKI 123
Query: 515 AKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDA 574
++ A ++D+ + LSGGQKQR+AIA L + KI++LDE+TS LD
Sbjct: 124 VRDVLADVGMLDYIDS-------EPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDP 176
Query: 575 ENEYLVQSAIEKLIEGK--TVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNS 632
+ + I KL + TV++I H + ++Q+ VLD GK++ GS P
Sbjct: 177 AGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGS-------PVE 229
Query: 633 MFNK 636
+F+K
Sbjct: 230 IFSK 233
>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport
system, ATPase component. The biological function of
this family is not well characterized, but display ABC
domains similar to members of ABCA subfamily. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 211
Score = 118 bits (297), Expect = 3e-30
Identities = 66/229 (28%), Positives = 110/229 (48%), Gaps = 25/229 (10%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
+ N+ Y + L+ +SL + G M ++G +G+GK+TL +L L P +G I
Sbjct: 1 LQLENLTKRYGKK---RALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTI 56
Query: 460 LIDGVDIKELDPMYLRSQIGSVSQEPTLFSG-TIYE-----NILYGVNDSSSVTKSDIIH 513
IDG D+ + P LR +IG + QE ++ T+ E L G+ K+ +
Sbjct: 57 RIDGQDVLK-QPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEV--KARVDE 113
Query: 514 AAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALD 573
+ N +G LSGG ++R+ IA+AL+ IL++DE T+ LD
Sbjct: 114 VLELVNLGDRA-------KKKIGS----LSGGMRRRVGIAQALVGDPSILIVDEPTAGLD 162
Query: 574 AENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKS-NQICVLDKGKIVEIG 621
E ++ + +L E + V+ H + + NQ+ VL+KGK+V G
Sbjct: 163 PEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211
>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit;
Provisional.
Length = 351
Score = 121 bits (306), Expect = 3e-30
Identities = 83/233 (35%), Positives = 121/233 (51%), Gaps = 30/233 (12%)
Query: 414 DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMY 473
++++L+L I+ G+M +++G SG GK+T+ L+ L P G+I IDG D+
Sbjct: 18 SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTH----- 72
Query: 474 LRS----QIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFK 528
RS I V Q LF ++ EN+ YG+ V K + KEA + F+
Sbjct: 73 -RSIQQRDICMVFQSYALFPHMSLGENVGYGLK-MLGVPKEERKQRVKEALELVDLAGFE 130
Query: 529 NGF-DTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKL 587
+ + D I SGGQ+QR+A+ARALI K K+LL DE S LDA L +S EK+
Sbjct: 131 DRYVDQI--------SGGQQQRVALARALILKPKVLLFDEPLSNLDAN---LRRSMREKI 179
Query: 588 IE-----GKTVLTIAHRLS-TIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMF 634
E T L + H S S+ + V++KGKI++IGS L + P S F
Sbjct: 180 RELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPASRF 232
>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit,
PQQ-dependent alcohol dehydrogenase system. Members of
this protein family are the ATP-binding subunit of an
ABC transporter system that is associated with PQQ
biosynthesis and PQQ-dependent alcohol dehydrogenases.
While this family shows homology to several efflux ABC
transporter subunits, the presence of a periplasmic
substrate-binding protein and association with systems
for catabolism of alcohols suggests a role in import
rather than detoxification [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 236
Score = 118 bits (298), Expect = 3e-30
Identities = 69/232 (29%), Positives = 117/232 (50%), Gaps = 27/232 (11%)
Query: 404 NIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDG 463
+ F Y +R L+D+S ++ G +++G +G+GKSTL LL RLY Q G+I + G
Sbjct: 6 GLSFRYGARR---ALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAG 62
Query: 464 VDIKELDPMYLRSQIGSVSQEPTL-FSGTIYENILYGVNDSSSVTKSDIIHAA------K 516
D++ L ++G V Q+PTL ++ +N+ Y HAA
Sbjct: 63 HDLRRAPRAALA-RLGVVFQQPTLDLDLSVRQNLRY--------------HAALHGLSRA 107
Query: 517 EANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAEN 576
EA A + + G ++ L+GG ++R+ IARAL+ + +LLLDE T LD +
Sbjct: 108 EARARIAELLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPAS 167
Query: 577 EYLVQSAIEKLI--EGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHL 626
+ + + L +G +VL H + I +++ VL +G+++ G+ A L
Sbjct: 168 RAAITAHVRALARDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAEL 219
>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component
[Inorganic ion transport and metabolism].
Length = 254
Score = 119 bits (300), Expect = 3e-30
Identities = 72/235 (30%), Positives = 115/235 (48%), Gaps = 37/235 (15%)
Query: 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGK 458
I+ N+ SY +RP +L D+SL ++ G +T++IG +G+GKSTL +L L P +G+
Sbjct: 4 MIEVENLTVSYGNRP---VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGE 60
Query: 459 ILIDGVDIKELDPMYLRSQIGSVSQEPTL---FSGTIYENILYG-------VNDSSSVTK 508
I I G +++ R +IG V Q+ ++ F T+ + +L G + K
Sbjct: 61 IKIFGKPVRKRRK---RLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDK 117
Query: 509 SDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEA 568
+ A + D +GE LSGGQKQR+ +ARAL + +LLLDE
Sbjct: 118 EKVDEALERVGMEDLR-------DRQIGE----LSGGQKQRVLLARALAQNPDLLLLDEP 166
Query: 569 TSALDAENEYLVQSAIEKLI-----EGKTVLTIAHRLSTIRK-SNQICVLDKGKI 617
+ +D Q I L+ EGKTVL + H L + +++ L++ I
Sbjct: 167 FTGVDVAG----QKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNRHLI 217
>gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of
the sulfate transporter. Part of the ABC transporter
complex cysAWTP involved in sulfate import. Responsible
for energy coupling to the transport system. The complex
is composed of two ATP-binding proteins (cysA), two
transmembrane proteins (cysT and cysW), and a
solute-binding protein (cysP). ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 239
Score = 118 bits (298), Expect = 3e-30
Identities = 75/242 (30%), Positives = 122/242 (50%), Gaps = 17/242 (7%)
Query: 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGK 458
I+ N+ + D V L+D+SL I SG + +++G SGSGK+TL L+ L P +G
Sbjct: 2 SIEVRNVSKRFG---DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGT 58
Query: 459 ILIDGVDIKELDPMYLRSQIGSVSQEPTLFSG-TIYENILYG--VNDSSSVTKSDIIHAA 515
IL G D ++ +G V Q LF T+++N+ +G V S I A
Sbjct: 59 ILFGGEDATDVPVQ--ERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEI-RA 115
Query: 516 KEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAE 575
K V D + LSGGQ+QR+A+ARAL + K+LLLDE ALDA+
Sbjct: 116 KVHELLKLV-----QLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAK 170
Query: 576 NEYLVQSAIEKLIE--GKTVLTIAHRLS-TIRKSNQICVLDKGKIVEIGSYAHLIKNPNS 632
++ + +L + T + + H + ++++ V++KG+I ++G+ + +P S
Sbjct: 171 VRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDHPAS 230
Query: 633 MF 634
F
Sbjct: 231 PF 232
>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 119 bits (301), Expect = 4e-30
Identities = 73/222 (32%), Positives = 121/222 (54%), Gaps = 12/222 (5%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
I+ N+ F Y + LND+S ++ G S+IG +GSGKST L+ L + ++G+I
Sbjct: 5 IEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQI 64
Query: 460 LIDGVDIKELDPMYLRSQIGSVSQEP-TLFSG-TIYENILYGVNDSSSVTKSDIIHAAKE 517
+IDG + E + +R +IG V Q P F G T+ +++ +G+ ++ + ++ E
Sbjct: 65 IIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGL-ENKGIPHEEMKERVNE 123
Query: 518 ANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENE 577
A + DFK LSGGQKQR+AIA A+ + KI++LDEATS LD E
Sbjct: 124 ALELVGMQDFKE-------REPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGR 176
Query: 578 YLVQSAIEKLIE--GKTVLTIAHRLSTIRKSNQICVLDKGKI 617
+ I+ + + TV++I H L + S+++ V+ G++
Sbjct: 177 LELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQV 218
>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding
subunit. This model describes spermidine/putrescine ABC
transporter, ATP binding subunit in bacteria and its
equivalents in archaea. This transport system belong to
the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Polyamines like spermidine and putrescine play
vital role in cell proliferation, differentiation, and
ion homeostasis. The concentration of polyamines within
the cell are regulated by biosynthesis, degradation and
transport (uptake and efflux included) [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 325
Score = 120 bits (303), Expect = 5e-30
Identities = 71/206 (34%), Positives = 111/206 (53%), Gaps = 14/206 (6%)
Query: 433 VIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSG-T 491
++G SG GK+TL LL P +G I++DG D+ + P +LR I V Q LF T
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNV-PPHLRH-INMVFQSYALFPHMT 58
Query: 492 IYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIA 551
+ EN+ +G+ V +++I EA V + + LSGGQ+QR+A
Sbjct: 59 VEENVAFGLK-MRKVPRAEIKPRVLEA--LRLV-----QLEEFADRKPHQLSGGQQQRVA 110
Query: 552 IARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLS-TIRKSNQ 608
+ARAL+ K KILLLDE SALD + +Q ++ + E G T + + H + S++
Sbjct: 111 LARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSDR 170
Query: 609 ICVLDKGKIVEIGSYAHLIKNPNSMF 634
I ++ KGKI +IG+ + + P ++F
Sbjct: 171 IAIMRKGKIAQIGTPEEIYEEPANLF 196
>gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 316
Score = 119 bits (301), Expect = 8e-30
Identities = 70/261 (26%), Positives = 114/261 (43%), Gaps = 55/261 (21%)
Query: 404 NIRFSYPSRPDAV-ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQN-----G 457
N+ S+P+ V ++ +S +++ G + ++G SGSGKS LA ++ L N G
Sbjct: 6 NLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGG 65
Query: 458 KILIDGVDIKELDPMYLR----SQIGSVSQEPTLFS-------GT-IYENILYGVNDSSS 505
+IL DG D+ L LR +I + Q+P + S G I E + S
Sbjct: 66 EILFDGKDLLSLSEKELRKIRGKEIAMIFQDP-MTSLNPVMTIGDQIAEVLRLHGKGLS- 123
Query: 506 VTKSDIIHAAKEA-------------NAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAI 552
K + A E +Y LSGG +QR+ I
Sbjct: 124 --KKEAKERAIELLELVGIPDPERRLKSYPH-----------------ELSGGMRQRVMI 164
Query: 553 ARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIRK-SNQI 609
A AL K+L+ DE T+ALD + + +++L G ++ I H L + + ++++
Sbjct: 165 AMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRV 224
Query: 610 CVLDKGKIVEIGSYAHLIKNP 630
V+ G+IVE G + KNP
Sbjct: 225 AVMYAGRIVEEGPVEEIFKNP 245
>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein.
[Transport and binding proteins, Anions].
Length = 237
Score = 117 bits (294), Expect = 9e-30
Identities = 72/242 (29%), Positives = 122/242 (50%), Gaps = 23/242 (9%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
I+ NI + L+D++L++ +GS+ +++G SGSGKSTL ++ L P +G+I
Sbjct: 1 IEIANISKRFG---SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRI 57
Query: 460 LIDGVDIKELDPMYLRSQIGSVSQEPTLFSG-TIYENILYGVN---DSSSVTKSDIIHAA 515
++G D + +IG V Q LF T+ +NI +G+ + K+ +
Sbjct: 58 RLNGQDATRVHAR--DRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELL 115
Query: 516 KEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAE 575
+ G + N LSGGQ+QR+A+ARAL + ++LLLDE ALDA+
Sbjct: 116 ELVQLEGLGDRYPN-----------QLSGGQRQRVALARALAVEPQVLLLDEPFGALDAK 164
Query: 576 NEYLVQSAIEKL---IEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNS 632
++S + KL + TV + + +++I V+ GKI +IGS + +P +
Sbjct: 165 VRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDHPAN 224
Query: 633 MF 634
F
Sbjct: 225 PF 226
>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding
subunit. This model describes the glycine
betaine/L-proline ATP binding subunit in bacteria and
its equivalents in archaea. This transport system belong
to the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Functionally, this transport system is involved
in osmoregulation. Under conditions of stress, the
organism recruits these transport system to accumulate
glycine betaine and other solutes which offer
osmo-protection. It has been demonstrated that glycine
betaine uptake is accompanied by symport with sodium
ions. The locus has been named variously as proU or
opuA. A gene library from L.lactis functionally
complements an E.coli proU mutant. The comlementing
locus is similar to a opuA locus in B.sutlis. This
clarifies the differences in nomenclature [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 363
Score = 120 bits (302), Expect = 1e-29
Identities = 76/225 (33%), Positives = 118/225 (52%), Gaps = 16/225 (7%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYL--- 474
+ND L I G + ++G SGSGKST +L RL +P G+I IDG +I + P+ L
Sbjct: 9 VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREV 68
Query: 475 -RSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFD 532
R +IG V Q+ LF TI +N G + + + A E ++ +
Sbjct: 69 RRKKIGMVFQQFALFPHMTILQNTSLGP-ELLGWPEQERKEKALELLK---LVGLEEYEH 124
Query: 533 TIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--G 590
E LSGG +QR+ +ARAL + ILL+DEA SALD +Q ++KL
Sbjct: 125 RYPDE----LSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQ 180
Query: 591 KTVLTIAHRL-STIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMF 634
KT++ I H L IR ++I ++ G+IV++G+ +++NP + +
Sbjct: 181 KTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEY 225
>gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase
component [Amino acid transport and metabolism].
Length = 268
Score = 118 bits (297), Expect = 1e-29
Identities = 69/222 (31%), Positives = 98/222 (44%), Gaps = 56/222 (25%)
Query: 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRS 476
++ +S I+ G ++G SG GKSTL L+L L +P +G+I
Sbjct: 28 AVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEI----------------- 70
Query: 477 QIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEA-NAYGFVIDFKNGFDTIV 535
LF G D + ++K + E G +F +
Sbjct: 71 ----------LFEG----------KDITKLSKEERRERVLELLEKVGLPEEFLYRYP--- 107
Query: 536 GERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE------ 589
LSGGQ+QRI IARAL K+++ DE SALD VQ+ I L++
Sbjct: 108 ----HELSGGQRQRIGIARALALNPKLIVADEPVSALDV----SVQAQILNLLKDLQEEL 159
Query: 590 GKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLIKNP 630
G T L I+H LS +R S++I V+ GKIVEIG + NP
Sbjct: 160 GLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSNP 201
>gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 285
Score = 117 bits (296), Expect = 2e-29
Identities = 72/226 (31%), Positives = 119/226 (52%), Gaps = 18/226 (7%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQN-----GKILIDGVDI--KELD 470
L+D+S+ I +T++IG SG GKST + R+ D + G++ G ++ ++D
Sbjct: 55 LDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114
Query: 471 PMYLRSQIGSVSQEPTLFSGTIYENILYG--VNDSSSVTKSDIIHAAKEANAYGFVIDFK 528
P+ LR +IG V Q+P F +IY+N+ YG + + + + A + V K
Sbjct: 115 PVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEV---K 171
Query: 529 NGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI 588
+ D G+ LSGGQ+QR+ IARA+ +++L+DE SALD ++ IE+L
Sbjct: 172 DQLD----SSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELA 227
Query: 589 EGKTVLTIAHRL-STIRKSNQICV-LDKGKIVEIGSYAHLIKNPNS 632
E TV+ + H + R S++ V L G++VE + +NP S
Sbjct: 228 EEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKIFENPES 273
>gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein;
Provisional.
Length = 260
Score = 116 bits (293), Expect = 3e-29
Identities = 78/239 (32%), Positives = 129/239 (53%), Gaps = 26/239 (10%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD--PQ---NGKILIDGVDI--KELD 470
L +++L I +T+ IG SG GKSTL R+Y+ P+ G+IL+DG +I + D
Sbjct: 29 LKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQD 88
Query: 471 PMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSD----IIHAAKEANAYGFVID 526
LR+++G V Q+PT F +IY+NI +GV +++++ + A +A + V D
Sbjct: 89 IALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKD 148
Query: 527 FKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEK 586
+ + G LSGGQ+QR+ IAR + + ++LLLDE SALD + ++ I +
Sbjct: 149 -------KLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITE 201
Query: 587 LIEGKTVLTIAHRL-STIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLMKYQTMD 644
L + TV+ + H + R S+ + G+++E G N +++F K K QT D
Sbjct: 202 LKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFG-------NTDTIFTKPAKKQTED 253
>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional.
Length = 1560
Score = 123 bits (310), Expect = 5e-29
Identities = 75/225 (33%), Positives = 122/225 (54%), Gaps = 7/225 (3%)
Query: 416 VILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLR 475
++L +S +I ++G +GSGKSTL + +R+ + G+I ++G +I LR
Sbjct: 1324 LVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELR 1383
Query: 476 SQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKE-ANAYGFVIDFKNGFDTI 534
Q + Q+P LF GT+ +N+ D S + AA E V G D+
Sbjct: 1384 RQFSMIPQDPVLFDGTVRQNV-----DPFLEASSAEVWAALELVGLRERVASESEGIDSR 1438
Query: 535 VGERGIMLSGGQKQRIAIARALIKK-SKILLLDEATSALDAENEYLVQSAIEKLIEGKTV 593
V E G S GQ+Q + +ARAL+KK S +L+DEAT+ +D + +Q+ + TV
Sbjct: 1439 VLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTV 1498
Query: 594 LTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLM 638
+TIAHRL T+ + ++I V+D G + E+GS L+ N S+F+ ++
Sbjct: 1499 ITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMV 1543
Score = 106 bits (267), Expect = 9e-24
Identities = 64/217 (29%), Positives = 116/217 (53%), Gaps = 20/217 (9%)
Query: 416 VILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLR 475
V+L D+S+ + G +T V+G++GSGKSTL LL ++ G++ + R
Sbjct: 674 VLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE------------R 721
Query: 476 SQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAK-EANAYGFVIDFKNGFDTI 534
S I V Q+ + + T+ NIL+ ++ + +D + ++ EA+ + G +T
Sbjct: 722 S-IAYVPQQAWIMNATVRGNILF-FDEEDAARLADAVRVSQLEAD----LAQLGGGLETE 775
Query: 535 VGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAE-NEYLVQSAIEKLIEGKTV 593
+GE+G+ LSGGQK R+++ARA+ + LLD+ SALDA E +V+ + GKT
Sbjct: 776 IGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTR 835
Query: 594 LTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNP 630
+ H++ + +++ + L G++ GS A ++
Sbjct: 836 VLATHQVHVVPRADYVVALGDGRVEFSGSSADFMRTS 872
Score = 40.1 bits (94), Expect = 0.005
Identities = 45/220 (20%), Positives = 79/220 (35%), Gaps = 29/220 (13%)
Query: 69 LFTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLM 128
L TL + + + L+S T+ +P L V + + L L L
Sbjct: 235 LRTLFAALPYYVWWQIPFKLLSDVCTLTLPVLLKYF--VKFLDADNATWGRGLGLVLTLF 292
Query: 129 LVFVVGACCNFGRVYLMNVSA-----QSITKKLRERLFGSIISQETAYFDKHKTGELINR 183
L ++ + C R Y +++ ++ + E+ F IS ++ TG +IN
Sbjct: 293 LTQLIQSVCLH-RFYYISIRCGLQYRSALNALIFEKCF--TISSKSLAQPDMNTGRIINM 349
Query: 184 ISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLALISLI---IVPPVAGL--A 238
+S D ++ M M+ ++S L L L+ + VA L
Sbjct: 350 MSTDVERINS---------FMQYCMYLWSSPMVLLLSILL-LSRLVGWCALMAVAVLLVT 399
Query: 239 IVYGKFVRKITRNVQDKLANA----VQVAEERISNIRTVK 274
+ + K + K+A A V+ E S IR K
Sbjct: 400 LPLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAK 439
>gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component
of branched chain amino acids transport system. The
Mj1267/LivG ABC transporter subfamily is involved in the
transport of the hydrophobic amino acids leucine,
isoleucine and valine. MJ1267 is a branched-chain amino
acid transporter with 29% similarity to both the LivF
and LivG components of the E. coli branched-chain amino
acid transporter. MJ1267 contains an insertion from
residues 114 to 123 characteristic of LivG
(Leucine-Isoleucine-Valine) homologs. The branched-chain
amino acid transporter from E. coli comprises a
heterodimer of ABCs (LivF and LivG), a heterodimer of
six-helix TM domains (LivM and LivH), and one of two
alternative soluble periplasmic substrate binding
proteins (LivK or LivJ).
Length = 236
Score = 114 bits (289), Expect = 6e-29
Identities = 70/225 (31%), Positives = 114/225 (50%), Gaps = 18/225 (8%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQ 477
L+D+S ++ G + +IG +G+GK+TL L+ P +G +L DG DI L P + ++
Sbjct: 16 LDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPP-HEIAR 74
Query: 478 --IGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYG---FVIDF---K 528
IG Q P LF T+ EN++ + +E A +++
Sbjct: 75 LGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLA 134
Query: 529 NGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSAL-DAENEYLVQSAIEKL 587
+ D GE LS GQ++R+ IARAL K+LLLDE + L E E L + I +L
Sbjct: 135 DLADRPAGE----LSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAE-LIREL 189
Query: 588 IE-GKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLIKNP 630
E G TVL + H + + ++++ VLD+G+++ G+ + NP
Sbjct: 190 RERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRNNP 234
>gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the
osmoprotectant proline/glycine betaine uptake system.
This family comprises the glycine betaine/L-proline ATP
binding subunit in bacteria and its equivalents in
archaea. This transport system belong to the larger
ATP-Binding Cassette (ABC) transporter superfamily. The
characteristic feature of these transporters is the
obligatory coupling of ATP hydrolysis to substrate
translocation. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 269
Score = 115 bits (290), Expect = 9e-29
Identities = 75/223 (33%), Positives = 120/223 (53%), Gaps = 16/223 (7%)
Query: 416 VILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYL- 474
V +ND+SL ++ G + ++G SGSGKSTL + RL +P +GK+LIDG DI + L
Sbjct: 38 VGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELR 97
Query: 475 ---RSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNG 530
R +I V Q L T+ EN+ +G+ + V +++ A EA ++ +
Sbjct: 98 ELRRKKISMVFQSFALLPHRTVLENVAFGL-EVQGVPRAEREERAAEALE---LVGLEGW 153
Query: 531 FDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE- 589
E LSGG +QR+ +ARAL ILL+DEA SALD +Q + +L
Sbjct: 154 EHKYPDE----LSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAE 209
Query: 590 -GKTVLTIAHRLS-TIRKSNQICVLDKGKIVEIGSYAHLIKNP 630
KT++ I H L +R ++I ++ G++V++G+ ++ NP
Sbjct: 210 LQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTNP 252
>gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell
division and chromosome partitioning].
Length = 223
Score = 113 bits (286), Expect = 1e-28
Identities = 74/231 (32%), Positives = 112/231 (48%), Gaps = 28/231 (12%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
I F N+ +YP +A L D+S I G + G SG+GKSTL L+ P GKI
Sbjct: 2 IRFENVSKAYPGGREA--LRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKI 59
Query: 460 LIDGVDI---KELDPMYLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAA 515
L++G D+ K + +LR QIG V Q+ L T+YEN+ + +I
Sbjct: 60 LVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPL-RVIGKPPREIRRRV 118
Query: 516 KEANAYGFVIDFKNGFDTIVGERGIM------LSGGQKQRIAIARALIKKSKILLLDEAT 569
E V+D +VG + LSGG++QR+AIARA++ + +LL DE T
Sbjct: 119 SE------VLD-------LVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPT 165
Query: 570 SALDAENEYLVQSAIEKLIE-GKTVLTIAHRLSTIRKSNQICV-LDKGKIV 618
LD + + + E++ G TVL H L + + + L+ G++V
Sbjct: 166 GNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLV 216
>gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase
component [Amino acid transport and metabolism].
Length = 256
Score = 114 bits (288), Expect = 1e-28
Identities = 79/232 (34%), Positives = 120/232 (51%), Gaps = 23/232 (9%)
Query: 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIK-------EL 469
+L +SL+ +G + S+IGSSGSGKST + L P G I ++G +I+ +L
Sbjct: 21 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQL 80
Query: 470 DPM------YLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYG 522
P LR+++G V Q L+S T+ EN++ V+K++ I A++ A
Sbjct: 81 KPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLA-- 138
Query: 523 FVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQS 582
K G LSGGQ+QR+AIARAL + +++L DE TSALD E V
Sbjct: 139 -----KVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLK 193
Query: 583 AIEKLI-EGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLIKNPNS 632
++ L EG+T++ + H + R S+ + L +GKI E G + NP S
Sbjct: 194 VMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPPEQVFGNPQS 245
>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 269
Score = 114 bits (288), Expect = 2e-28
Identities = 71/241 (29%), Positives = 123/241 (51%), Gaps = 20/241 (8%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
I F N+ F Y S + L D+S I G TS++G +GSGKST+A L++ + ++G+I
Sbjct: 8 IVFKNVSFQYQS-DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEI 66
Query: 460 LIDGVDIKELDPMYLRSQIGSVSQEP-TLFSGTIYE-NILYGVNDSSSVTKSDIIHAAKE 517
+ I + + LR IG V Q P F G+I + ++ +G+ ++ +V ++ E
Sbjct: 67 FYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGL-ENHAVPYDEMHRRVSE 125
Query: 518 ANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENE 577
A +++ + LSGGQKQR+AIA L +++LDEATS LD +
Sbjct: 126 ALKQVDMLERAD-------YEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDAR 178
Query: 578 YLVQSAIEKLIEGK--TVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFN 635
+ + K+ T+++I H LS +++ + V++KG + + G P +F+
Sbjct: 179 QNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEG-------TPTEIFD 231
Query: 636 K 636
Sbjct: 232 H 232
>gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system,
ATPase component [Amino acid transport and metabolism].
Length = 386
Score = 116 bits (293), Expect = 3e-28
Identities = 78/221 (35%), Positives = 120/221 (54%), Gaps = 16/221 (7%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLR-- 475
+ND SL ++ G + ++G SGSGKSTL LL RL +P G+IL+DG DI +L LR
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELREL 103
Query: 476 --SQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFD 532
+I V Q L T+ EN+ +G+ + V K++ A EA + + + +
Sbjct: 104 RRKKISMVFQSFALLPHRTVLENVAFGL-EVQGVPKAEREERALEALELVGLEGYADKY- 161
Query: 533 TIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--G 590
E LSGG +QR+ +ARAL ILL+DEA SALD +Q + +L
Sbjct: 162 --PNE----LSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLK 215
Query: 591 KTVLTIAHRLS-TIRKSNQICVLDKGKIVEIGSYAHLIKNP 630
KT++ I H L +R ++I ++ G+IV++G+ ++ NP
Sbjct: 216 KTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILLNP 256
>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system,
duplicated ATPase component [General function prediction
only].
Length = 534
Score = 118 bits (299), Expect = 3e-28
Identities = 85/273 (31%), Positives = 138/273 (50%), Gaps = 54/273 (19%)
Query: 400 IDFNNIRFSYPSRP-------DAVI-LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRL 451
++ ++R +P + D + ++ +SL ++ G ++G SGSGKSTL + LLRL
Sbjct: 277 LEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRL 336
Query: 452 YDPQNGKILIDGVDI-----KELDPMYLRSQIGSVSQEPTLFSG-----TIYENILYG-- 499
Q G+I DG DI KE+ P LR ++ V Q+P + T+ + I G
Sbjct: 337 IPSQ-GEIRFDGQDIDGLSRKEMRP--LRRRMQVVFQDP--YGSLSPRMTVGQIIEEGLR 391
Query: 500 VNDSSSVTKSD----IIHAAKEANAYGFVID-FKNGFDTIVGERGIMLSGGQKQRIAIAR 554
V++ ++ ++ +I A +E + + + F SGGQ+QRIAIAR
Sbjct: 392 VHEPK-LSAAERDQRVIEALEEVGLDPATRNRYPHEF-----------SGGQRQRIAIAR 439
Query: 555 ALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE------GKTVLTIAHRLSTIRK-SN 607
ALI K +++LLDE TSALD VQ+ + L+ G + L I+H L+ +R +
Sbjct: 440 ALILKPELILLDEPTSALDRS----VQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCH 495
Query: 608 QICVLDKGKIVEIGSYAHLIKNPNSMFNK-LMK 639
++ V+ GKIVE G + NP + + L+
Sbjct: 496 RVIVMRDGKIVEQGPTEAVFANPQHEYTRALLA 528
Score = 100 bits (250), Expect = 4e-22
Identities = 70/252 (27%), Positives = 110/252 (43%), Gaps = 59/252 (23%)
Query: 414 DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQN------GKILIDGVDIK 467
+ +S I++G +++G SGSGKS A+ +L L P G IL DG D+
Sbjct: 22 TVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLL-PSPAAAHPSGSILFDGEDLL 80
Query: 468 ELDPMYLR----SQIGSVSQEPTLFSG-----TIYENILYGVNDSSSVTKSD-------- 510
LR ++IG + QEP + TI + + + ++++
Sbjct: 81 AASERQLRGVRGNKIGMIFQEP--MTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALEL 138
Query: 511 -----IIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLL 565
I K +AY LSGGQ+QR+ IA AL + +L+
Sbjct: 139 LELVGIPEPEKRLDAYPH-----------------ELSGGQRQRVMIAMALANEPDLLIA 181
Query: 566 DEATSALDAENEYLVQSAIEKLIE------GKTVLTIAHRLSTIRK-SNQICVLDKGKIV 618
DE T+ALD VQ+ I L++ G +L I H L +RK ++++ V+ G+IV
Sbjct: 182 DEPTTALDVT----VQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIV 237
Query: 619 EIGSYAHLIKNP 630
E G+ L P
Sbjct: 238 ETGTTETLFAAP 249
>gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein
YbbL; Provisional.
Length = 225
Score = 112 bits (282), Expect = 3e-28
Identities = 67/201 (33%), Positives = 106/201 (52%), Gaps = 11/201 (5%)
Query: 414 DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMY 473
DA ILN++S +++G + G SG GKSTL ++ L P +G +L +G DI L P
Sbjct: 19 DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEI 78
Query: 474 LRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDT 533
R Q+ +Q PTLF T+Y+N+++ I + + + ++ DT
Sbjct: 79 YRQQVSYCAQTPTLFGDTVYDNLIF---------PWQIRNQQPDPAIFLDDLERFALPDT 129
Query: 534 IVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGK-- 591
I+ + LSGG+KQRI++ R L K+LLLDE TSALD N++ V I + + +
Sbjct: 130 ILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNI 189
Query: 592 TVLTIAHRLSTIRKSNQICVL 612
VL + H I ++++ L
Sbjct: 190 AVLWVTHDKDEINHADKVITL 210
>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding
protein. Members of this family are the ATP-binding
protein of the D-methionine ABC transporter complex.
Known members belong to the Proteobacteria.
Length = 343
Score = 115 bits (290), Expect = 3e-28
Identities = 78/237 (32%), Positives = 124/237 (52%), Gaps = 21/237 (8%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYL--- 474
LN++SL + +G + VIG+SG+GKSTL + L P +G +++DG D+ L L
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80
Query: 475 RSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDT 533
R QIG + Q L S T++ N+ + + + K +I E A + D + + +
Sbjct: 81 RRQIGMIFQHFNLLSSRTVFGNVALPL-ELDNTPKDEIKRKVTELLALVGLGDKHDSYPS 139
Query: 534 IVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE---- 589
LSGGQKQR+AIARAL K+LL DEATSALD QS +E L E
Sbjct: 140 -------NLSGGQKQRVAIARALASNPKVLLCDEATSALDPAT---TQSILELLKEINRR 189
Query: 590 -GKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLMKYQTMD 644
G T+L I H + +++ + + V+ G+++E G+ + + +P + + T+
Sbjct: 190 LGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSHPKTPLAQKFIRSTLH 246
>gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain
of the thiamine transport system. Part of the
binding-protein-dependent transport system tbpA-thiPQ
for thiamine and TPP. Probably responsible for the
translocation of thiamine across the membrane. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 211
Score = 112 bits (281), Expect = 3e-28
Identities = 68/228 (29%), Positives = 110/228 (48%), Gaps = 23/228 (10%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
+ + IRFSY +P L G +T+++G SGSGKSTL L+ PQ+G++
Sbjct: 1 VRLDKIRFSYGEQP-----MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRV 55
Query: 460 LIDGVDIKELDPMYLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSD--IIHAAK 516
LI+GVD+ P + + QE LF+ T+ +N+ G++ +T D I A
Sbjct: 56 LINGVDVTAAPPA--DRPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVAL 113
Query: 517 EANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAEN 576
+ G + LSGG++QR+A+AR L++ +LLLDE +ALD
Sbjct: 114 A----------RVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPAL 163
Query: 577 EYLVQSAIEKLI--EGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIG 621
+ + L TVL + H+ ++ + ++ LD G+I G
Sbjct: 164 RAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211
>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE. This
model describes FtsE, a member of the ABC transporter
ATP-binding protein family. This protein, and its
permease partner FtsX, localize to the division site. In
a number of species, the ftsEX gene pair is located next
to FtsY, the signal recognition particle-docking protein
[Cellular processes, Cell division].
Length = 214
Score = 111 bits (280), Expect = 6e-28
Identities = 69/223 (30%), Positives = 112/223 (50%), Gaps = 16/223 (7%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
I+F+N+ +YP A L+D+SL I+ G + G SG+GK+TL LL P G++
Sbjct: 2 IEFHNVSKAYPGGVAA--LHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQV 59
Query: 460 LIDGVDIKELDPMY---LRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAA 515
I G D+ L LR +IG V Q+ L T+YEN+ + + + +I
Sbjct: 60 RIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPL-EVRGKKEREIQRRV 118
Query: 516 KEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAE 575
A + ++ D + LSGG++QR+AIARA++ +LL DE T LD +
Sbjct: 119 GAALRQ---VGLEHKADAFPEQ----LSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPD 171
Query: 576 NEYLVQSAIEKL-IEGKTVLTIAHRLSTIRKSN-QICVLDKGK 616
+ +++L G TV+ H LS + + ++ +LD G+
Sbjct: 172 LSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214
>gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 112 bits (283), Expect = 6e-28
Identities = 75/226 (33%), Positives = 116/226 (51%), Gaps = 20/226 (8%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDP-----QNGKILIDGVDI--KELD 470
L D+ L I ++T+ IG SG GKST L R+ D GKI +DG DI LD
Sbjct: 35 LFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLD 94
Query: 471 PMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSV-TKSD----IIHAAKEANAYGFVI 525
+ LR+++G V Q+P F +IYEN+ YG +K++ + + ++A + V
Sbjct: 95 VVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVK 154
Query: 526 DFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIE 585
D + E G LSGGQ+QR+ IARA+ +++L+DE SALD V+ I+
Sbjct: 155 DR-------LHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELID 207
Query: 586 KLIEGKTVLTIAHRLS-TIRKSNQICVLDKGKIVEIGSYAHLIKNP 630
+L + T++ + H + R S + G +VE+G + NP
Sbjct: 208 ELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTEKMFTNP 253
>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein;
Provisional.
Length = 272
Score = 112 bits (282), Expect = 1e-27
Identities = 80/255 (31%), Positives = 125/255 (49%), Gaps = 58/255 (22%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQN---------GKILIDGVDI-- 466
L D+S++I +T+ IG SG GKSTL LR ++ N G+I +DG +I
Sbjct: 41 LFDISMRIPKNRVTAFIGPSGCGKSTL----LRCFNRMNDLVDNCRIEGEIRLDGQNIYD 96
Query: 467 KELDPMYLRSQIGSVSQEPTLFSGTIYENILYG-----VNDS--------SSVTKSDIIH 513
K++D LR ++G V Q P F +IYEN++YG +N+ S+ + +
Sbjct: 97 KKVDVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWD 156
Query: 514 AAKE---ANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATS 570
K+ NA+G LSGGQ+QR+ IARA+ + ++LLLDE TS
Sbjct: 157 EVKDRLHENAFG-------------------LSGGQQQRLVIARAIAIEPEVLLLDEPTS 197
Query: 571 ALDAENEYLVQSAIEKLIEGKTVLTIAHRL-STIRKSNQICVLDKGKIVEIGSYAHLIKN 629
ALD + ++ I +L T++ + H + R S+ + GK+VE G +
Sbjct: 198 ALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYG-------D 250
Query: 630 PNSMFNKLMKYQTMD 644
+++F K QT D
Sbjct: 251 TDTLFTSPAKKQTED 265
>gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 111 bits (278), Expect = 2e-27
Identities = 74/241 (30%), Positives = 119/241 (49%), Gaps = 44/241 (18%)
Query: 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD-----PQNGKILIDGVDI--KEL 469
IL D++L I +T+ IG SG GKST R+ D G++ IDG+D+ +
Sbjct: 20 ILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDT 79
Query: 470 DPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKN 529
+ + LR+++G V Q+P F +IY+N+ YG +G + K
Sbjct: 80 NVVLLRAKVGMVFQKPNPFPKSIYDNVAYG------------------PKLHGLAKN-KK 120
Query: 530 GFDTIV-------------GER----GIMLSGGQKQRIAIARALIKKSKILLLDEATSAL 572
D IV G+R LSGGQ+QR+ IARA+ K +LL+DE SAL
Sbjct: 121 KLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSAL 180
Query: 573 DAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLIKNPN 631
D ++++ I++L + T++ + H + +K S+++ G+IVE + + KNP
Sbjct: 181 DPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIFKNPQ 240
Query: 632 S 632
S
Sbjct: 241 S 241
>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding
protein. Phosphonates are a class of
phosphorus-containing organic compound with a stable
direct C-P bond rather than a C-O-P linkage. A number of
bacterial species have operons, typically about 14 genes
in size, with genes for ATP-dependent transport of
phosphonates, degradation, and regulation of the
expression of the system. Members of this protein family
are the ATP-binding cassette component of tripartite ABC
transporters of phosphonates [Transport and binding
proteins, Anions].
Length = 243
Score = 110 bits (277), Expect = 2e-27
Identities = 70/228 (30%), Positives = 120/228 (52%), Gaps = 13/228 (5%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
++ N+ YP+ L +++L I G ++IG SG+GKSTL + RL +P +G I
Sbjct: 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSI 59
Query: 460 LIDGVDI-----KELDPMYLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIH 513
L++G DI K+L + R +IG + Q L T+ EN+L+G +S +
Sbjct: 60 LLEGTDITKLRGKKLRKL--RRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGR 117
Query: 514 AAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALD 573
++E + G +R LSGGQ+QR+AIARAL ++ ++L DE ++LD
Sbjct: 118 FSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLD 177
Query: 574 AENEYLVQSAIEKLIE--GKTVLTIAHRLSTIRK-SNQICVLDKGKIV 618
+ V ++++ + G TV+ H++ +K +++I L G+IV
Sbjct: 178 PKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIV 225
>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 257
Score = 110 bits (277), Expect = 2e-27
Identities = 82/245 (33%), Positives = 130/245 (53%), Gaps = 13/245 (5%)
Query: 397 KGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRL---YD 453
K D NI Y D IL D+++KI + S+ ++G SGSGKSTL +L RL YD
Sbjct: 5 KSAEDVFNISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYD 64
Query: 454 PQ---NGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKS 509
+ +GK+L G DI ++D + LR ++G V Q+P F +IY+NI Y + K
Sbjct: 65 SKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKR 124
Query: 510 DIIHAAKEA-NAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEA 568
+I +E G + + ++ + LSGGQ+QR+ IARAL K K+LL+DE
Sbjct: 125 EIKKIVEECLRKVGLWKEVYDRLNSPASQ----LSGGQQQRLTIARALALKPKVLLMDEP 180
Query: 569 TSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHLI 627
TS +D N ++ I +L ++ ++H + R ++ + L G++VE GS +
Sbjct: 181 TSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIF 240
Query: 628 KNPNS 632
+P +
Sbjct: 241 TSPKN 245
>gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic
fibrosis transmembrane regulator, subfamily C. The CFTR
subfamily domain 1. The cystic fibrosis transmembrane
regulator (CFTR), the product of the gene mutated in
patients with cystic fibrosis, has adapted the ABC
transporter structural motif to form a tightly regulated
anion channel at the apical surface of many epithelia.
Use of the term assembly of a functional ion channel
implies the coming together of subunits, or at least
smaller not-yet functional components of the active
whole. In fact, on the basis of current knowledge only
the CFTR polypeptide itself is required to form an ATP-
and protein kinase A-dependent low-conductance chloride
channel of the type present in the apical membrane of
many epithelial cells. CFTR displays the typical
organization (IM-ABC)2 and carries a characteristic
hydrophilic R-domain that separates IM1-ABC1 from
IM2-ABC2.
Length = 282
Score = 111 bits (279), Expect = 3e-27
Identities = 79/243 (32%), Positives = 129/243 (53%), Gaps = 18/243 (7%)
Query: 403 NNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILID 462
NN+ FS A +L +++LKI+ G M ++ GS+GSGK++L ML+L +P GKI
Sbjct: 38 NNLFFSNLCLVGAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHS 97
Query: 463 GVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYG 522
G +I SQ + GTI ENI++GV+ KS + E +
Sbjct: 98 G-------------RISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEED--- 141
Query: 523 FVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALD-AENEYLVQ 581
+ F +T++GE GI LSGGQ+ RI++ARA+ K + + LLD LD + + +
Sbjct: 142 -ITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFE 200
Query: 582 SAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLMKYQ 641
S + KL+ KT + + ++ ++K+++I +L +G G+++ L +KLM Y
Sbjct: 201 SCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQSLRPDFSSKLMGYD 260
Query: 642 TMD 644
T D
Sbjct: 261 TFD 263
>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein;
Provisional.
Length = 250
Score = 110 bits (276), Expect = 4e-27
Identities = 76/239 (31%), Positives = 116/239 (48%), Gaps = 47/239 (19%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD-----PQNGKILIDGVDI--KELD 470
L ++L I+ +T++IG SG GKST L R+ D G++L+DG DI ++D
Sbjct: 19 LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78
Query: 471 PMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNG 530
LR ++G V Q+P F +IY+N+ YG H K+ K
Sbjct: 79 VNQLRKRVGMVFQQPNPFPMSIYDNVAYGPR----------THGIKD----------KKK 118
Query: 531 FDTIVGER------------------GIMLSGGQKQRIAIARALIKKSKILLLDEATSAL 572
D IV E+ + LSGGQ+QR+ IARAL + ++LL+DE TSAL
Sbjct: 119 LDEIV-EKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSAL 177
Query: 573 DAENEYLVQSAIEKLIEGKTVLTIAHRL-STIRKSNQICVLDKGKIVEIGSYAHLIKNP 630
D + ++ I++L + T++ + H + R S++ G+IVE G L NP
Sbjct: 178 DPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDLFTNP 236
>gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter
subfamily G of the ATP-binding cassette superfamily.
ABCG transporters are involved in eye pigment (EP)
precursor transport, regulation of lipid-trafficking
mechanisms, and pleiotropic drug resistance (DR). DR is
a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. Compared to other members of the
ABC transporter subfamilies, the ABCG transporter family
is composed of proteins that have an ATP-binding
cassette domain at the N-terminus and a TM
(transmembrane) domain at the C-terminus.
Length = 194
Score = 108 bits (272), Expect = 4e-27
Identities = 64/234 (27%), Positives = 110/234 (47%), Gaps = 59/234 (25%)
Query: 399 EIDFNNIRFSYPSRPDAV---ILNDLSLKIQSGSMTSVIGSSGSGKSTL----AMLLLRL 451
+ F N+ + S P +L ++S K + G +T+++G SG+GKSTL A L
Sbjct: 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGL 62
Query: 452 YDPQNGKILIDGVDIKELDPMYLRSQIGSVSQE----PTLFSGTIYENILYGVNDSSSVT 507
+G++LI+G LD R IG V Q+ PTL T+ E +++
Sbjct: 63 GV--SGEVLINGRP---LDKRSFRKIIGYVPQDDILHPTL---TVRETLMF--------- 105
Query: 508 KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDE 567
AAK RG+ SGG+++R++IA L+ +L LDE
Sbjct: 106 ------AAK--------------------LRGL--SGGERKRVSIALELVSNPSLLFLDE 137
Query: 568 ATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLST--IRKSNQICVLDKGKIV 618
TS LD+ + V S + +L G+T++ H+ S+ +++ +L +G+++
Sbjct: 138 PTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVI 191
>gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the
cell division transporter. FtsE is a hydrophilic
nucleotide-binding protein that binds FtsX to form a
heterodimeric ATP-binding cassette (ABC)-type
transporter that associates with the bacterial inner
membrane. The FtsE/X transporter is thought to be
involved in cell division and is important for assembly
or stability of the septal ring.
Length = 214
Score = 108 bits (272), Expect = 7e-27
Identities = 66/225 (29%), Positives = 115/225 (51%), Gaps = 18/225 (8%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
I+F N+ +YP L+ +++ I +G ++G SG+GKSTL L+ + P +G I
Sbjct: 1 IEFINVTKTYP--NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTI 58
Query: 460 LIDGVDIKELD----PMYLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHA 514
++G D+ +L P YLR +IG V Q+ L +YEN+ + + VT
Sbjct: 59 RVNGQDVSDLRGRAIP-YLRRKIGVVFQDFRLLPDRNVYENVAF----ALEVTGVPPREI 113
Query: 515 AKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDA 574
K A ++ + + E LSGG++QR+AIARA++ IL+ DE T LD
Sbjct: 114 RKRVPAALELVGLSHKHRALPAE----LSGGEQQRVAIARAIVNSPTILIADEPTGNLDP 169
Query: 575 ENEYLVQSAIEKL-IEGKTVLTIAHRLSTI-RKSNQICVLDKGKI 617
+ + + + ++K+ G TV+ H + +++ L++GK+
Sbjct: 170 DTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214
>gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC
transporter, lactococcin 972 group. A gene pair with a
fairly wide distribution consists of a polypeptide
related to the lactococcin 972 (see TIGR01653) and
multiple-membrane-spanning putative immunity protein
(see TIGR01654). This model represents a small clade
within the ABC transporters that regularly are found
adjacent to these bacteriocin system gene pairs and are
likely serve as export proteins [Cellular processes,
Toxin production and resistance, Transport and binding
proteins, Unknown substrate].
Length = 206
Score = 107 bits (270), Expect = 9e-27
Identities = 60/205 (29%), Positives = 107/205 (52%), Gaps = 20/205 (9%)
Query: 414 DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPM- 472
D VIL+DL+L I+ G M ++IG SGSGKSTL ++ L +G++ ++G + L+
Sbjct: 10 DKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSKK 69
Query: 473 ---YLRSQIGSVSQEPTLF-SGTIYENI---LYGVNDSSSVTKSDIIHAAKEANAYGFVI 525
+ R ++G + Q L + T+ EN+ L S + A ++ +
Sbjct: 70 ASKFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKL- 128
Query: 526 DFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIE 585
+ E LSGG++QR+A+ARA++K ++L DE T +LD +N V +
Sbjct: 129 ------KQKIYE----LSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLL 178
Query: 586 KLI-EGKTVLTIAHRLSTIRKSNQI 609
+L EGKT++ + H ++++++
Sbjct: 179 ELNDEGKTIIIVTHDPEVAKQADRV 203
>gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 109 bits (273), Expect = 9e-27
Identities = 74/226 (32%), Positives = 116/226 (51%), Gaps = 13/226 (5%)
Query: 414 DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD-----PQNGKILIDGVDI-- 466
DA IL +++L I S+T++IG SG GKST L R+ D G I +DGVDI
Sbjct: 15 DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYD 74
Query: 467 KELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEA-NAYGFVI 525
+D + LR ++G V Q+P F +I++N+ YG+ + I +E+ A
Sbjct: 75 PAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWD 134
Query: 526 DFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIE 585
+ K+ D + + LSGGQ+QR+ IAR + +++L+DE SALD + ++ I
Sbjct: 135 EVKDKLD----KSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIH 190
Query: 586 KLIEGKTVLTIAHRL-STIRKSNQICVLDKGKIVEIGSYAHLIKNP 630
KL E T++ + H + R S G+I+E G + NP
Sbjct: 191 KLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIFINP 236
>gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein;
Provisional.
Length = 253
Score = 109 bits (273), Expect = 1e-26
Identities = 80/237 (33%), Positives = 120/237 (50%), Gaps = 43/237 (18%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD-----PQNGKILIDGVDI--KELD 470
L+D+SL+ + +T++IG SG GKST L R+ D G+IL+DG +I +D
Sbjct: 22 LHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVD 81
Query: 471 PMYLRSQIGSVSQEPTLFSGTIYENILYG-----VND----SSSVTKSDIIHAAKEANAY 521
+ LR ++G V Q+P F +I+EN+ YG V D + V +S + HAA
Sbjct: 82 VVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERS-LRHAAL----- 135
Query: 522 GFVIDFKNGFDTI---VGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEY 578
+D + + E + LSGGQ+QR+ IARAL + ++LL+DE SALD
Sbjct: 136 ---------WDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDP---- 182
Query: 579 LVQSAIEKLI-EGKTVLTIA---HRL-STIRKSNQICVLDKGKIVEIGSYAHLIKNP 630
+ IE+LI E K TI H + R S+ GK++E+G + P
Sbjct: 183 IATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIFTRP 239
>gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein;
Provisional.
Length = 258
Score = 109 bits (273), Expect = 1e-26
Identities = 72/231 (31%), Positives = 120/231 (51%), Gaps = 26/231 (11%)
Query: 420 DLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD--PQ---NGKILIDGVDI--KELDPM 472
D++L I+ S+T+ IG SG GKST+ L R+++ P G++L+DG D+ +DP+
Sbjct: 22 DVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPV 81
Query: 473 YLRSQIGSVSQEPTLF-SGTIYENILYGVNDSSSVTKSDIIHAAKE----ANAYGFVIDF 527
+R IG V Q P F + +I +N++ G+ + K D+ ++ AN + V D
Sbjct: 82 AVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDR 141
Query: 528 KNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKL 587
+ + G LSGGQ+QR+ IARA+ + +LL+DE SALD + ++ I +L
Sbjct: 142 -------LDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINEL 194
Query: 588 IEGKTVLTIAHRL-STIRKSNQIC------VLDKGKIVEIGSYAHLIKNPN 631
+ T++ + H + R S+Q G++VEI + NP
Sbjct: 195 KQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEIDDTEKIFSNPT 245
>gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 108 bits (271), Expect = 1e-26
Identities = 77/242 (31%), Positives = 118/242 (48%), Gaps = 18/242 (7%)
Query: 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD--PQN 456
+ID ++ F Y D L +S++I+ S+ + IG SG GKST L R+ D P
Sbjct: 3 KIDARDVNFWYG---DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPAT 59
Query: 457 ---GKILIDGVDI--KELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDI 511
G+I IDG +I K + LR +G V Q P F +I+EN+ YG+ + V +
Sbjct: 60 RLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFPKSIFENVAYGLR-VNGVKDNAF 118
Query: 512 IHAAKEANAYGFVI--DFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEAT 569
I E G + + K+ E LSGGQ+QR+ IARA+ +LL+DE
Sbjct: 119 IRQRVEETLKGAALWDEVKDKLK----ESAFALSGGQQQRLCIARAMAVSPSVLLMDEPA 174
Query: 570 SALDAENEYLVQSAIEKLIEGKTVLTIAHRL-STIRKSNQICVLDKGKIVEIGSYAHLIK 628
SALD + V+ I +L + T++ + H + R S++ G++VE +
Sbjct: 175 SALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIFT 234
Query: 629 NP 630
NP
Sbjct: 235 NP 236
>gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose
transporter, MalK. ATP binding cassette (ABC) proteins
function from bacteria to human, mediating the
translocation of substances into and out of cells or
organelles. ABC transporters contain two
transmembrane-spanning domains (TMDs) or subunits and
two nucleotide binding domains (NBDs) or subunits that
couple transport to the hydrolysis of ATP. In the
maltose transport system, the periplasmic maltose
binding protein (MBP) stimulates the ATPase activity of
the membrane-associated transporter, which consists of
two transmembrane subunits, MalF and MalG, and two
copies of the ATP binding subunit, MalK, and becomes
tightly bound to the transporter in the catalytic
transition state, ensuring that maltose is passed to the
transporter as ATP is hydrolyzed.
Length = 213
Score = 107 bits (269), Expect = 1e-26
Identities = 64/222 (28%), Positives = 119/222 (53%), Gaps = 17/222 (7%)
Query: 404 NIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDG 463
N+ + + L+DL+L I G ++G SG GK+T ++ L +P +G+I I G
Sbjct: 5 NVTKRFGNV---TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGG 61
Query: 464 VDIKELDPMYLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYG 522
D+ +L P R I V Q L+ T+Y+NI +G+ V K +I +E
Sbjct: 62 RDVTDLPP-KDRD-IAMVFQNYALYPHMTVYDNIAFGLK-LRKVPKDEIDERVREVAE-- 116
Query: 523 FVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQS 582
+ ++ + LSGGQ+QR+A+ RA++++ K+ L+DE S LDA+ +++
Sbjct: 117 -----LLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRA 171
Query: 583 AIEKLIE--GKTVLTIAH-RLSTIRKSNQICVLDKGKIVEIG 621
+++L + G T + + H ++ + +++I V++ G+I +IG
Sbjct: 172 ELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213
>gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 246
Score = 108 bits (271), Expect = 2e-26
Identities = 69/219 (31%), Positives = 114/219 (52%), Gaps = 10/219 (4%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQ---NGKILIDGVDIKELDPMYL 474
L D++++I+ +T++IG+SG GKST R+ D +G + I+G D+K D + L
Sbjct: 18 LFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVAL 77
Query: 475 RSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKE--ANAYGFVIDFKNGFD 532
R +G V Q+P +F +IYENI Y + D A G + K+
Sbjct: 78 RKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLK 137
Query: 533 TIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKT 592
+ + LSGGQ+QR+ IARAL K K+LLLDE TSALD + +++ +++L +
Sbjct: 138 ----QNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLS 193
Query: 593 VLTIAHRLST-IRKSNQICVLDKGKIVEIGSYAHLIKNP 630
++ + H + R ++ G+++E G +NP
Sbjct: 194 MIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFENP 232
>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding
protein YecC; Provisional.
Length = 250
Score = 107 bits (270), Expect = 2e-26
Identities = 75/227 (33%), Positives = 116/227 (51%), Gaps = 20/227 (8%)
Query: 416 VILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPM--- 472
+L+ + L+++ G + ++IG SGSGK+TL + L P+ G I + + I +
Sbjct: 17 TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQ 76
Query: 473 -----YLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANA-YGFVI 525
LR +G V Q LF T+ ENI+ G K + A+E A G
Sbjct: 77 KGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGL-- 134
Query: 526 DFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIE 585
G +T R LSGGQ+QR+AIARAL + +++L DE TSALD E V + I
Sbjct: 135 ---AGKETSYPRR---LSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIR 188
Query: 586 KLIEGK-TVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLIKNP 630
+L + K T++ + H +S R +++ +D+G+IVE G L +P
Sbjct: 189 QLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFADP 235
>gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 237
Score = 106 bits (268), Expect = 4e-26
Identities = 65/225 (28%), Positives = 113/225 (50%), Gaps = 25/225 (11%)
Query: 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYL-R 475
L +SL+++ G + +++G +G+GK+TL ++ L P++G+I+ DG DI L P R
Sbjct: 18 ALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERAR 77
Query: 476 SQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFD-- 532
I V + +F T+ EN+L G A + D + ++
Sbjct: 78 LGIAYVPEGRRIFPRLTVEENLLLG--------------AYARRDKEAQERDLEEVYELF 123
Query: 533 ----TIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI 588
+R LSGG++Q +AIARAL+ + K+LLLDE + L + + AI++L
Sbjct: 124 PRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELR 183
Query: 589 --EGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLIKNP 630
G T+L + + +++ VL+ G+IV G+ A L+ +P
Sbjct: 184 KEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADP 228
>gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 107 bits (267), Expect = 5e-26
Identities = 71/227 (31%), Positives = 119/227 (52%), Gaps = 20/227 (8%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD--PQ---NGKILIDGVDI--KELD 470
+ D+S+ S+T++IG SG GKST+ + R++D P GKIL+D DI + +D
Sbjct: 20 VKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79
Query: 471 PMYLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSD---IIHAA-KEANAYGFVI 525
P+ +R ++G V Q+P F +IY+N++ G + V +S+ I+ ++ K + V
Sbjct: 80 PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVK 139
Query: 526 DFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIE 585
D + LSGGQ+QR+ IAR + K +++L+DE SALD + ++ IE
Sbjct: 140 DRLKS-------NAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIE 192
Query: 586 KLIEGKTVLTIAHRL-STIRKSNQICVLDKGKIVEIGSYAHLIKNPN 631
+L E T++ + H + R S+ G +VE G + P
Sbjct: 193 ELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKKIFTTPE 239
>gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 250
Score = 106 bits (268), Expect = 6e-26
Identities = 68/226 (30%), Positives = 115/226 (50%), Gaps = 13/226 (5%)
Query: 416 VILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLR 475
+ND+SL+++ G + +IG +G+GK+TL L+ Y P +G ++ G DI L P +
Sbjct: 18 TAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGL-PPHRI 76
Query: 476 SQIGSVS--QEPTLFSG-TIYENILYGVND----SSSVTKSDIIHAAKEANAYGFVIDFK 528
+++G Q LF G T+ EN+ G + S + + +EA +
Sbjct: 77 ARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEF 136
Query: 529 NGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDA-ENEYLVQSAIEKL 587
G + LS GQ++R+ IARAL + K+LLLDE + L+ E E L + I +L
Sbjct: 137 VGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAE-LIREL 195
Query: 588 --IEGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLIKNP 630
G T+L I H + + +++I VL+ G+++ G+ + NP
Sbjct: 196 RDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVRNNP 241
>gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 107 bits (270), Expect = 6e-26
Identities = 79/245 (32%), Positives = 135/245 (55%), Gaps = 27/245 (11%)
Query: 400 IDFNNIRFSY-PSRP-DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNG 457
I N+ Y P + L++++++I+ G +IG +GSGKSTL L L P +G
Sbjct: 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSG 62
Query: 458 KILIDGVDI--KELDPMYLRSQIGSVSQEP--TLFSGTIYENILYGVNDSSSVTKSDIIH 513
KI+IDGVDI K++ +R ++G V Q P LF TI ++I +G + +++ +I +
Sbjct: 63 KIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPIN-LGLSEEEIEN 121
Query: 514 AAKEA-NAYGFVIDF-----KNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDE 567
K A N G +D+ K+ F+ LSGGQK+R+AIA + + KIL+LDE
Sbjct: 122 RVKRAMNIVG--LDYEDYKDKSPFE---------LSGGQKRRVAIAGVVAMEPKILILDE 170
Query: 568 ATSALDAENEYLVQSAIEKLIEGK--TVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYA 624
T+ LD + + + I++L + T++ ++H + + K +++I V++KGK G+
Sbjct: 171 PTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPR 230
Query: 625 HLIKN 629
+ K
Sbjct: 231 EVFKE 235
>gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 106 bits (265), Expect = 1e-25
Identities = 74/239 (30%), Positives = 109/239 (45%), Gaps = 45/239 (18%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD-----PQNGKILIDGVDIKE--LD 470
L D+++ I +T++IG SG GKSTL R+ D G IL +G +I + D
Sbjct: 22 LYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGAD 81
Query: 471 PMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNG 530
+ LR +IG V Q P F +IYEN+ YG IH K K
Sbjct: 82 VVALRRKIGMVFQRPNPFPKSIYENVAYGPR----------IHGEKN----------KKT 121
Query: 531 FDTIV-----------------GERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALD 573
DTIV + + LSGGQ+QR+ IAR L +++L+DE SALD
Sbjct: 122 LDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALD 181
Query: 574 AENEYLVQSAIEKLIEGKTVLTIAHRLS-TIRKSNQICVLDKGKIVEIGSYAHLIKNPN 631
++ IE L + TV+ + H + R S+ + GK++E + +NP+
Sbjct: 182 PIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIFENPH 240
>gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 258
Score = 106 bits (265), Expect = 1e-25
Identities = 74/228 (32%), Positives = 114/228 (50%), Gaps = 26/228 (11%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQN-----GKILIDGVDI--KELD 470
L ++S++I S+T++IG SG GKST L R+ D GK+ I+G DI ++D
Sbjct: 28 LKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVD 87
Query: 471 PMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNG 530
+ LR +G V Q+P F +IY+N+ YG IH A + + G V++
Sbjct: 88 VVELRKNVGMVFQKPNPFPMSIYDNVAYGPR----------IHGANKKDLDG-VVENALR 136
Query: 531 FDTIVGER-------GIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSA 583
+ E + LSGGQ+QR+ IAR L K KI+L DE TSALD + ++
Sbjct: 137 SAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDL 196
Query: 584 IEKLIEGKTVLTIAHRL-STIRKSNQICVLDKGKIVEIGSYAHLIKNP 630
I L + T++ + H + R S+ G+++E G + NP
Sbjct: 197 IMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIFHNP 244
>gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase
protein; Reviewed.
Length = 375
Score = 108 bits (272), Expect = 1e-25
Identities = 68/239 (28%), Positives = 125/239 (52%), Gaps = 17/239 (7%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
++ I S+ + ++++L L I +G +++G SG GK+T+ L+ P +G+I
Sbjct: 15 VELRGISKSFDGKE---VISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRI 71
Query: 460 LIDGVDIKELDPMYLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEA 518
++DG DI + + +V Q LF T++EN+ +G+ ++I EA
Sbjct: 72 MLDGQDITHVPAE--NRHVNTVFQSYALFPHMTVFENVAFGLR-MQKTPAAEITPRVMEA 128
Query: 519 NAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEY 578
+ +F + LSGGQ+QR+AIARA++ K K+LLLDE+ SALD +
Sbjct: 129 LRMVQLEEFAQ-------RKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRK 181
Query: 579 LVQSAIEKLIE--GKTVLTIAH-RLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMF 634
+Q+ ++ L G T + + H + + S++I V+ G+I + G+ + + P ++F
Sbjct: 182 QMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEPKNLF 240
>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component
[Energy production and conversion / Inorganic ion
transport and metabolism].
Length = 245
Score = 105 bits (264), Expect = 1e-25
Identities = 76/227 (33%), Positives = 118/227 (51%), Gaps = 24/227 (10%)
Query: 408 SYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIK 467
SY S+ AV D+S + + G +T ++G +G+GK+TL ++ L P +GK+ IDGVD
Sbjct: 10 SYGSKVQAV--RDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTV 67
Query: 468 ELDPMYLRSQIGSVSQEPTLFSG-TIYENI-----LYGVNDSSSVTKSDIIHAAKEANAY 521
DP ++R +IG + E L++ T EN+ L G++ K+ I +K
Sbjct: 68 R-DPSFVRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKE--IKARIAELSKR---- 120
Query: 522 GFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQ 581
+ D VGE S G KQ++AIARAL+ IL+LDE TS LD
Sbjct: 121 ---LQLLEYLDRRVGE----FSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFH 173
Query: 582 SAIEKL-IEGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHL 626
I++L EG+ V+ +H + + +++ VL KG++V GS L
Sbjct: 174 DFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEAL 220
>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems,
ATPase components [General function prediction only].
Length = 501
Score = 110 bits (277), Expect = 1e-25
Identities = 73/217 (33%), Positives = 117/217 (53%), Gaps = 23/217 (10%)
Query: 413 PDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDG--VDIKELD 470
P V +D+SL ++ G + +++G +G+GKSTL +L LY P +G+I +DG V IK
Sbjct: 15 PGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIK--S 72
Query: 471 PM-YLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANA----YGFV 524
P +R IG V Q L T+ ENI+ G + S D A YG
Sbjct: 73 PRDAIRLGIGMVHQHFMLVPTLTVAENIILG-LEPSKGGLIDRRQARARIKELSERYGLP 131
Query: 525 IDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSAL-DAENEYLVQSA 583
+D D V + LS G++QR+ I +AL + +++L+LDE T+ L E + L +
Sbjct: 132 VD----PDAKVAD----LSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFE-I 182
Query: 584 IEKLI-EGKTVLTIAHRLSTIRK-SNQICVLDKGKIV 618
+ +L EGKT++ I H+L + ++++ VL +GK+V
Sbjct: 183 LRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVV 219
Score = 66.8 bits (164), Expect = 2e-11
Identities = 56/227 (24%), Positives = 102/227 (44%), Gaps = 22/227 (9%)
Query: 410 PSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKE- 468
R + D+S ++++G + + G +G+G+S L + L P +G+IL++G D+
Sbjct: 266 KDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGR 325
Query: 469 LDPMYLRSQ-IGSVSQE-------PTLFSGTIYEN-ILYGVNDSSSVTKSDIIHAAKEAN 519
L P R + V ++ L ++ EN +L + + A
Sbjct: 326 LSPRERRRLGLAYVPEDRHGHGLVLDL---SLAENLVLGRHDKKPFSRGGFLDRRAIRKF 382
Query: 520 AYGFVIDFK---NGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAEN 576
A + +F D LSGG +Q++ +AR L ++ +L+ + T LD
Sbjct: 383 ARELIEEFDVRAPSPDAPARS----LSGGNQQKLILARELARRPDLLIAAQPTRGLDVGA 438
Query: 577 -EYLVQSAIEKLIEGKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIG 621
E++ + +E GK VL I+ L I S++I V+ +G+IV I
Sbjct: 439 IEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGIV 485
>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component
[Carbohydrate transport and metabolism].
Length = 500
Score = 110 bits (277), Expect = 2e-25
Identities = 70/228 (30%), Positives = 119/228 (52%), Gaps = 21/228 (9%)
Query: 400 IDFNNIRFSYPSRPDAVI-LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGK 458
++ I S+ V L+ +SL ++ G + +++G +G+GKSTL +L +Y P +G+
Sbjct: 9 LELRGISKSFG----GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGE 64
Query: 459 ILIDGVDIKELDPMYLRSQ-IGSVSQEPTLFSG-TIYENILYG---VNDSSSVTKSDIIH 513
ILIDG + P + I +V QE +L ++ ENI G + + +
Sbjct: 65 ILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRR 124
Query: 514 AAKEA-NAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSAL 572
A+E G ID DT+VG+ LS Q+Q + IARAL +++L+LDE T+AL
Sbjct: 125 RARELLARLGLDIDP----DTLVGD----LSIAQRQMVEIARALSFDARVLILDEPTAAL 176
Query: 573 DAENEYLVQSAIEKLIE-GKTVLTIAHRLSTIRK-SNQICVLDKGKIV 618
+ + I +L G ++ I+HRL + + +++I VL G++V
Sbjct: 177 TVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVV 224
Score = 66.4 bits (163), Expect = 2e-11
Identities = 60/225 (26%), Positives = 100/225 (44%), Gaps = 39/225 (17%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDP------ 471
+ D+S +++G + + G G+G++ LA L +G+IL+DG ++ P
Sbjct: 275 VRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKA 334
Query: 472 --MYL---RSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVID 526
Y+ R G V I ENI S + I + A A ++
Sbjct: 335 GIAYVPEDRKSEGLVLDMS------IAENITLASLRRFS-RRGLIDRRKERALAERYIRR 387
Query: 527 FK---NGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALD--AENEYLVQ 581
+ + +G LSGG +Q++ +AR L K+L+LDE T +D A+ E
Sbjct: 388 LRIKTPSPEQPIGT----LSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAE---- 439
Query: 582 SAIEKLI-----EGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEI 620
I +LI EGK +L I+ L + S++I V+ +G+IV
Sbjct: 440 --IYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGE 482
>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit;
Provisional.
Length = 377
Score = 108 bits (271), Expect = 2e-25
Identities = 69/222 (31%), Positives = 122/222 (54%), Gaps = 14/222 (6%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQ 477
++D+SL I G + +++G+SG GKSTL +L P G+I++DGVD+ + P Y R
Sbjct: 35 VDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP-YQRP- 92
Query: 478 IGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVG 536
I + Q LF T+ +NI +G+ + K++I E + +F
Sbjct: 93 INMMFQSYALFPHMTVEQNIAFGLK-QDKLPKAEIASRVNEMLGLVHMQEF-------AK 144
Query: 537 ERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVL 594
+ LSGGQ+QR+A+AR+L K+ K+LLLDE ALD + +Q + ++E G T +
Sbjct: 145 RKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCV 204
Query: 595 TIAH-RLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFN 635
+ H + + + +I ++++GK V+IG + ++P + ++
Sbjct: 205 MVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPTTRYS 246
>gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 305
Score = 106 bits (267), Expect = 2e-25
Identities = 73/240 (30%), Positives = 117/240 (48%), Gaps = 32/240 (13%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD-----PQNGKILIDGVDIKE--LD 470
L +S+ I S+T++IG SG GKST L R+ D +G + +DG DI + ++
Sbjct: 61 LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120
Query: 471 PMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKS---------------DIIHAA 515
+ LR ++G V Q P F +I ENI YG + +++ +
Sbjct: 121 LVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERS 180
Query: 516 -KEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDA 574
++A + V D + + + LSGGQ+QR+ IAR L +++L+DE SALD
Sbjct: 181 LRQAALWDEVNDR-------LDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDP 233
Query: 575 ENEYLVQSAIEKLIEGKTVLTIAHRL-STIRKSNQICV-LDKGKIVEIGSYAHLIKNPNS 632
++ IE+L E TV+ + H + R S+Q V L G++VE + +NP S
Sbjct: 234 IATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTGGELVEYDDTDKIFENPES 293
>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein;
Provisional.
Length = 252
Score = 105 bits (264), Expect = 2e-25
Identities = 74/225 (32%), Positives = 113/225 (50%), Gaps = 19/225 (8%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD--PQ---NGKILIDGVDI--KELD 470
LN +SL +T++IG SGSGKSTL + R+ D P+ G I+ +G +I D
Sbjct: 21 LNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTD 80
Query: 471 PMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAA----KEANAYGFVID 526
+ LR +IG V Q+P F +IYEN++YG+ K + A K A+ + V D
Sbjct: 81 TVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKD 140
Query: 527 FKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEK 586
+ + + LSGGQ+QR+ IAR L KI+LLDE TSALD + ++ +
Sbjct: 141 -------RLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLG 193
Query: 587 LIEGKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHLIKNP 630
L + T+L + + R S++ G ++E + NP
Sbjct: 194 LKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMFMNP 238
>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE.
This family represents the NikE subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 265
Score = 105 bits (263), Expect = 3e-25
Identities = 71/224 (31%), Positives = 110/224 (49%), Gaps = 21/224 (9%)
Query: 415 AVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYL 474
A +L ++SL I+ G ++G SG GKSTLA LLL L P G + G D+ +LD
Sbjct: 24 APVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLD---- 79
Query: 475 RSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKS---------DIIHAAKEANAYGFVI 525
R Q + ++ L ++++ VN +V + + + ++A ++
Sbjct: 80 RKQRRAFRRDVQL----VFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAE-LL 134
Query: 526 DFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIE 585
D + LSGGQ QRI IARAL K K+++LDEA S LD + ++ +
Sbjct: 135 DMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLR 194
Query: 586 KLIE--GKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHL 626
KL + G L I H L ++ ++ V+DKG+IVE A L
Sbjct: 195 KLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVAQL 238
>gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 249
Score = 104 bits (260), Expect = 5e-25
Identities = 68/222 (30%), Positives = 116/222 (52%), Gaps = 14/222 (6%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD-----PQNGKILIDGVDI-KELDP 471
L ++L I + +T++IG SG GKSTL L R+ D GK+ +DG DI +D
Sbjct: 19 LKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDV 78
Query: 472 MYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVI--DFKN 529
LR ++G V Q+P F +IYEN+ YG+ + + ++ E + G + + K+
Sbjct: 79 ADLRIKVGMVFQKPNPFPMSIYENVAYGLR-AQGIKDKKVLDEVVERSLRGAALWDEVKD 137
Query: 530 GFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE 589
+ LSGGQ+QR+ IAR + + ++L+DE TSALD + ++ +E+L +
Sbjct: 138 RLKS----HAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK 193
Query: 590 GKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLIKNP 630
T++ + H + R+ S++ G++VE + NP
Sbjct: 194 NYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIFSNP 235
>gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 103 bits (259), Expect = 6e-25
Identities = 76/240 (31%), Positives = 132/240 (55%), Gaps = 16/240 (6%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD--PQ-- 455
I+ +++ S+ +L+ ++L+I ++T+++G SGSGKSTL + RL + P+
Sbjct: 4 IEIRDLKVSFG---QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEAR 60
Query: 456 -NGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSV-TKSDII 512
+G++ +DG DI ++D + LR ++ V Q P +I+EN+ G+ + V +K ++
Sbjct: 61 VSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQ 120
Query: 513 HAAKEANAYGFVID-FKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSA 571
+ A + D K+ D G+ LSGGQ+QR+ IARAL + ++LL DE T+
Sbjct: 121 ERVRWALEKAQLWDEVKDRLDAPAGK----LSGGQQQRLCIARALAFQPEVLLADEPTAN 176
Query: 572 LDAENEYLVQSAIEKLIEGKTVLTIAH-RLSTIRKSNQICVLDKGKIVEIGSYAHLIKNP 630
LD EN ++S +L + T++ + H R S+ + L KG+IVE G + NP
Sbjct: 177 LDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVFTNP 236
>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid
transporters, subfamily A. The ABCA subfamily mediates
the transport of a variety of lipid compounds. Mutations
of members of ABCA subfamily are associated with human
genetic diseases, such as, familial high-density
lipoprotein (HDL) deficiency, neonatal surfactant
deficiency, degenerative retinopathies, and congenital
keratinization disorders. The ABCA1 protein is involved
in disorders of cholesterol transport and high-density
lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein
transports vitamin A derivatives in the outer segments
of photoreceptor cells, and therefore, performs a
crucial step in the visual cycle. The ABCA genes are not
present in yeast. However, evolutionary studies of ABCA
genes indicate that they arose as transporters that
subsequently duplicated and that certain sets of ABCA
genes were lost in different eukaryotic lineages.
Length = 220
Score = 102 bits (257), Expect = 7e-25
Identities = 59/234 (25%), Positives = 105/234 (44%), Gaps = 22/234 (9%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
+ N+ +Y ++DLSL + G + ++G +G+GK+T +L P +G
Sbjct: 1 LQIRNLTKTYKKGTK-PAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTA 59
Query: 460 LIDGVDIKELDPMYLRSQIGSVSQEPTLFSG-TIYENI-----LYGVNDSSSVTKSDIIH 513
I+G I+ D R +G Q LF T+ E++ L G+ S
Sbjct: 60 YINGYSIRT-DRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKS---------E 109
Query: 514 AAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALD 573
+E V+ + + LSGG K+++++A ALI +LLLDE TS LD
Sbjct: 110 IKEEVELLLRVLGLTDKANKRART----LSGGMKRKLSLAIALIGGPSVLLLDEPTSGLD 165
Query: 574 AENEYLVQSAIEKLIEGKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHL 626
+ + I ++ +G++++ H + ++I ++ GK+ IGS L
Sbjct: 166 PASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219
>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 104 bits (260), Expect = 8e-25
Identities = 80/245 (32%), Positives = 125/245 (51%), Gaps = 32/245 (13%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
I N+ +SYP A L +++L I+ G +IG +GSGKSTLA+ L L PQ GK+
Sbjct: 2 IRLENVSYSYPDGTPA--LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKV 59
Query: 460 LIDGVDIKELDPMY-LRSQIGSVSQEP-TLFSG-TIYENILYGVNDSSSVTKSDIIHAAK 516
L+ G+D + + +R +G V Q P T F G T+ E++ +G
Sbjct: 60 LVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFG----------------- 102
Query: 517 EANAYGFVIDFKNGFDTIVGERGI---------MLSGGQKQRIAIARALIKKSKILLLDE 567
N I+ + D + E G+ LSGGQ Q +A+A L + + L+ DE
Sbjct: 103 PENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDE 162
Query: 568 ATSALDAENEYLVQSAIEKLIE-GKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHL 626
TS LD ++ V I+KL E GKT++ I H L + +++I V+D+GKIV G ++
Sbjct: 163 VTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENV 222
Query: 627 IKNPN 631
+ + +
Sbjct: 223 LSDVS 227
>gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 104 bits (260), Expect = 8e-25
Identities = 71/227 (31%), Positives = 116/227 (51%), Gaps = 23/227 (10%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDP-----QNGKILIDGVDI--KELD 470
+ + ++ + +T++IG SGSGKST L R+ D G+IL G+DI KE++
Sbjct: 36 IKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEIN 95
Query: 471 PMYLRSQIGSVSQEPTLFSGTIYENILY-----GVNDSSSVTKSDIIHAA-KEANAYGFV 524
+R IG V Q P F+ +IYENI + GV D + +I+ + K+A + V
Sbjct: 96 VYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVL--DEIVETSLKQAALWDQV 153
Query: 525 IDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAI 584
D + + + LSGGQ+QR+ IARA+ K ILL+DE SALD + ++ +
Sbjct: 154 KDDLH-------KSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETM 206
Query: 585 EKLIEGKTVLTIAHRLS-TIRKSNQICVLDKGKIVEIGSYAHLIKNP 630
+L + T++ + H + R S+ G ++E ++ NP
Sbjct: 207 FELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNIFTNP 253
>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 103 bits (258), Expect = 8e-25
Identities = 74/249 (29%), Positives = 126/249 (50%), Gaps = 26/249 (10%)
Query: 396 LKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD-- 453
+K +++ N+ Y + LND++L I +T++IG SG GKST L R+ D
Sbjct: 1 MKIKMESKNLNLWYGEKQ---ALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLI 57
Query: 454 ---PQNGKILIDGVDI--KELDPMYLRSQIGSVSQEPTLFSGTIYENILYG-----VNDS 503
G++L+DG +I K++D + LR ++G V Q+P F +IY+N+ YG + D
Sbjct: 58 SNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDK 117
Query: 504 SSVTKSDIIH-AAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKI 562
+ K I+ A K+A + V D + + LSGGQ+QR+ IAR + K +
Sbjct: 118 KELDK--IVEWALKKAALWDEVKDDLK-------KSALKLSGGQQQRLCIARTIAVKPDV 168
Query: 563 LLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIG 621
+L+DE TSALD + ++ + +L + T++ + H + R S+ G ++E
Sbjct: 169 ILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFN 228
Query: 622 SYAHLIKNP 630
+ P
Sbjct: 229 KTEKIFLEP 237
>gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of
branched-chain amino acid transporter. LivF (TM1139) is
part of the LIV-I bacterial ABC-type two-component
transport system that imports neutral, branched-chain
amino acids. The E. coli branched-chain amino acid
transporter comprises a heterodimer of ABC transporters
(LivF and LivG), a heterodimer of six-helix TM domains
(LivM and LivH), and one of two alternative soluble
periplasmic substrate binding proteins (LivK or LivJ).
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules.
Length = 222
Score = 102 bits (256), Expect = 1e-24
Identities = 65/214 (30%), Positives = 108/214 (50%), Gaps = 21/214 (9%)
Query: 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRS 476
IL +SL + G + +++G +G+GK+TL ++ L P++G I DG DI L P + R+
Sbjct: 15 ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPP-HERA 73
Query: 477 Q--IGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDT 533
+ IG V + +F T+ EN+L G + + Y K
Sbjct: 74 RAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARL-----ERVYELFPRLKERRKQ 128
Query: 534 IVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALD---AENEYLVQSAIEKLI-E 589
+ G LSGG++Q +AIARAL+ + K+LLLDE + L E + AI +L E
Sbjct: 129 LAGT----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEE---IFEAIRELRDE 181
Query: 590 GKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGS 622
G T+L + + +++ VL++G++V G+
Sbjct: 182 GVTILLVEQNARFALEIADRAYVLERGRVVLEGT 215
>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system,
ATP-binding component PhnT. This ATP-binding component
of an ABC transport system is found in Salmonella and
Burkholderia lineages in the vicinity of enzymes for the
breakdown of 2-aminoethylphosphonate.
Length = 362
Score = 105 bits (264), Expect = 1e-24
Identities = 71/244 (29%), Positives = 118/244 (48%), Gaps = 20/244 (8%)
Query: 398 GEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQ-- 455
G I +++R +Y + +L+DLSL+I++G + ++IG SG GK+TL +
Sbjct: 4 GGIRIDHLRVAYGAN---TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGL 60
Query: 456 NGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHA 514
G+I I D+ P + R + + Q LF + +N+ +G+ + + K+DI A
Sbjct: 61 TGRIAIADRDLTHAPP-HKRG-LALLFQNYALFPHLKVEDNVAFGLR-AQKMPKADI--A 115
Query: 515 AKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDA 574
+ A+A V G LSGG +QRIAIARA+ + +LLLDE SALDA
Sbjct: 116 ERVADALKLV-----GLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDA 170
Query: 575 ENEYLVQSAIEKLIE---GKTVLTIAH-RLSTIRKSNQICVLDKGKIVEIGSYAHLIKNP 630
++ I L E T+L + H + + +++ ++ G++ G L P
Sbjct: 171 NIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDAP 230
Query: 631 NSMF 634
F
Sbjct: 231 ADGF 234
>gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 103 bits (258), Expect = 1e-24
Identities = 74/238 (31%), Positives = 121/238 (50%), Gaps = 12/238 (5%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
++ N+ F Y D LN +S I G S+IG +GSGKST A L+ L++ GK+
Sbjct: 5 LEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKV 64
Query: 460 LIDGVDIKELDPMYLRSQIGSVSQEP--TLFSGTIYENILYGVNDSSSVTKSDIIHAAKE 517
IDG + + LR +IG V Q P T+ +++ +G+ ++ + + ++I E
Sbjct: 65 KIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGM-ENQGIPREEMIKRVDE 123
Query: 518 ANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENE 577
A ++DFK LSGGQKQR+A+A + + +I++LDE+TS LD
Sbjct: 124 ALLAVNMLDFKT-------REPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGR 176
Query: 578 YLVQSAIEKLIEGK--TVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSM 633
+ I ++ E TVL+I H L S++I V+ G+I++ + + L M
Sbjct: 177 QEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFATSEDM 234
>gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter,
ATP-binding protein. This ABC transporter ATP-binding
protein is found in a number of genomes in operon-like
contexts strongly suggesting a substrate specificity for
2-aminoethylphosphonate (2-AEP). The characterized
PhnSTUV system is absent in the genomes in which this
system is found. These genomes encode systems for the
catabolism of 2-AEP, making the need for a
2-AEP-specific transporter likely [Transport and binding
proteins, Amino acids, peptides and amines].
Length = 353
Score = 105 bits (263), Expect = 1e-24
Identities = 70/226 (30%), Positives = 111/226 (49%), Gaps = 22/226 (9%)
Query: 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRS 476
L D+SL ++ G ++G SG GK+TL ++ L G I G DI L P +
Sbjct: 19 ALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KR 76
Query: 477 QIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIV 535
G V Q LF T+ +NI YG+ + + ++++ E ++
Sbjct: 77 DYGIVFQSYALFPNLTVADNIAYGLK-NRGMGRAEVAERVAELLD---LVGLPGSERKYP 132
Query: 536 GERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDA-ENEYLVQSAIEKLIE--GKT 592
G+ LSGGQ+QR+A+ARAL +LLLDE SALDA E+L I +L G T
Sbjct: 133 GQ----LSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTE-IRQLQRRLGVT 187
Query: 593 VLTIAH----RLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMF 634
+ + H LS +++I V++ G I ++G+ + ++P + F
Sbjct: 188 TIMVTHDQEEALSM---ADRIVVMNHGVIEQVGTPQEIYRHPATPF 230
>gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 265
Score = 102 bits (256), Expect = 2e-24
Identities = 75/244 (30%), Positives = 123/244 (50%), Gaps = 24/244 (9%)
Query: 403 NNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD--PQN---G 457
N + F Y L ++++ + +T++IG SG GKST R++D P N G
Sbjct: 20 NKLNFYYGG---YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEG 76
Query: 458 KILI--DGVDI--KELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVN----DSSSVTKS 509
+I++ D V+I E+DP+ +R +I V Q+P F +I+EN+ YG+ S+ +
Sbjct: 77 EIILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEE 136
Query: 510 DIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEAT 569
+ +A + A + V D +G+ LSGGQ+QR+ IARAL +ILL DE T
Sbjct: 137 RVENALRNAALWDEVKDR-------LGDLAFNLSGGQQQRLCIARALATDPEILLFDEPT 189
Query: 570 SALDAENEYLVQSAIEKLIEGKTVLTIAHRL-STIRKSNQICVLDKGKIVEIGSYAHLIK 628
SALD ++ I L T+L + H + R S+ + G+++E G+ +
Sbjct: 190 SALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGATDTIFI 249
Query: 629 NPNS 632
P +
Sbjct: 250 KPKN 253
>gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 102 bits (255), Expect = 2e-24
Identities = 68/223 (30%), Positives = 110/223 (49%), Gaps = 15/223 (6%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD-----PQNGKILIDGVDI--KELD 470
L + L +T++IG SG GKST L R+ D G + + G +I D
Sbjct: 21 LKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNED 80
Query: 471 PMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVI--DFK 528
+ LR Q+G V Q+P F +IYEN++YG+ + V ++ A E + I + K
Sbjct: 81 VVQLRKQVGMVFQQPNPFPFSIYENVIYGLR-LAGVKDKAVLDEAVETSLKQAAIWDEVK 139
Query: 529 NGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI 588
+ E + LSGGQ+QR+ IAR L K ++LLDE TSALD + +++ + +L
Sbjct: 140 DHLH----ESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELR 195
Query: 589 EGKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHLIKNP 630
+ T++ + H + R S++ G ++E + NP
Sbjct: 196 DQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMFLNP 238
>gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 263
Score = 102 bits (256), Expect = 3e-24
Identities = 73/230 (31%), Positives = 109/230 (47%), Gaps = 14/230 (6%)
Query: 400 IDFNNIRFS-YPSRPDA-VILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNG 457
I +N + + P LN LSL+I G +VIGS+G+GKSTL + P +G
Sbjct: 2 ISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSG 61
Query: 458 KILIDGVDIKELDPMYLRSQIGSVSQEP---TLFSGTIYENILYGVNDSSSVTKSDIIHA 514
+ILIDGVD+ + + + V Q+P T TI EN+ + S A
Sbjct: 62 QILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLS---SA 118
Query: 515 AKEANAYGFVIDFK---NGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSA 571
E F G + + +R +LSGGQ+Q +++ A + KILLLDE T+A
Sbjct: 119 LNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAA 178
Query: 572 LDAENEYLVQSAIEKLIEGK--TVLTIAHRL-STIRKSNQICVLDKGKIV 618
LD + V K++E T L + H + + N++ +L GKIV
Sbjct: 179 LDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIV 228
>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein.
This model describes the energy-transducing ATPase
subunit ThiQ of the ThiBPQ thiamine (and thiamine
pyrophosphate) ABC transporter in several
Proteobacteria. This protein is found so far only in
Proteobacteria, and is found in complete genomes only if
the ThiB and ThiP subunits are also found [Transport and
binding proteins, Other].
Length = 213
Score = 100 bits (251), Expect = 3e-24
Identities = 64/229 (27%), Positives = 117/229 (51%), Gaps = 25/229 (10%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
+ + +R+ Y P + L + G + +++G SG+GKSTL L+ +P +G I
Sbjct: 1 LALDKVRYEYEHLP-----MEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSI 55
Query: 460 LIDGVDIKELDPMYLRSQIGSVSQEPTLFSG-TIYENILYGVNDS---SSVTKSDIIHAA 515
++ L P + + + QE LF+ T+ +NI G++ ++ + ++ AA
Sbjct: 56 KVNDQSHTGLAPY--QRPVSMLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAA 113
Query: 516 KEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAE 575
++ + + D + + LSGGQ+QR+A+AR L++ + ILLLDE SALD
Sbjct: 114 QQ-------VGIADYLDRLPEQ----LSGGQRQRVALARCLVRPNPILLLDEPFSALDPL 162
Query: 576 NEYLVQSAIEKLIEGK--TVLTIAHRLSTIRKS-NQICVLDKGKIVEIG 621
+ + +++L + T+L + H LS R +QI V+ +GKI +
Sbjct: 163 LREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVS 211
>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor
regulator (CFTR). The model describes the cystis
fibrosis transmembrane conductor regulator (CFTR) in
eukaryotes. The principal role of this protein is
chloride ion conductance. The protein is predicted to
consist of 12 transmembrane domains. Mutations or lesions
in the genetic loci have been linked to the aetiology of
asthma, bronchiectasis, chronic obstructive pulmonary
disease etc. Disease-causing mutations have been studied
by 36Cl efflux assays in vitro cell cultures and
electrophysiology, all of which point to the impairment
of chloride channel stability and not the biosynthetic
processing per se [Transport and binding proteins,
Anions].
Length = 1490
Score = 108 bits (270), Expect = 4e-24
Identities = 122/522 (23%), Positives = 232/522 (44%), Gaps = 61/522 (11%)
Query: 151 SITKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVS 210
+++K+L E++ S++ A + K G ++NR + D +++ + + D ++ T++V
Sbjct: 955 TVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIV- 1013
Query: 211 AGVSMMFIISSKLALISLIIVPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNI 270
+ +F++S I + +P ++ F+R + Q + + I+++
Sbjct: 1014 --LGAIFVVSVLQPYIFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSL 1071
Query: 271 R---TVKSFSQEKLEMSHFNAKMDDLFELAKKEALAKGVFFGFTG-----LSGNAIILSV 322
+ T+++F ++ S+F + LF K L +F + II
Sbjct: 1072 KGLWTIRAFGRQ----SYF----ETLFH--KALNLHTANWFLYLSTLRWFQMRIDIIFVF 1121
Query: 323 LYYGGVMVSYETITVG------------NLSSFLLYAAYIGISIGGLSNFYSELNKGLGA 370
+ ++ T G N+ S L +A I + GL S + K +
Sbjct: 1122 FFIAVTFIAIGTNQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFI-- 1179
Query: 371 CHRLWEIMEREPLISTSGGKFF---------SHSLK-----GEIDFNNIRFSYPSRPDAV 416
++ + EP S GGK+ H+ K G++D + Y AV
Sbjct: 1180 -----DLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEAGRAV 1234
Query: 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRS 476
L DLS ++ G ++G +GSGKSTL LLRL + G+I IDGV + R
Sbjct: 1235 -LQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTE-GEIQIDGVSWNSVTLQTWRK 1292
Query: 477 QIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVG 536
G + Q+ +FSGT +N+ + + +I A+E + F + D ++
Sbjct: 1293 AFGVIPQKVFIFSGTFRKNL----DPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLV 1348
Query: 537 ERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTI 596
+ G +LS G KQ + +AR+++ K+KILLLDE ++ LD +++ +++ TV+
Sbjct: 1349 DGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILS 1408
Query: 597 AHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLM 638
HR+ + + Q V++ + + S L+ N S+F + M
Sbjct: 1409 EHRVEALLECQQFLVIEGSSVKQYDSIQKLL-NETSLFKQAM 1449
Score = 106 bits (265), Expect = 2e-23
Identities = 67/229 (29%), Positives = 118/229 (51%), Gaps = 18/229 (7%)
Query: 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRS 476
+L ++S K++ G + +V GS+GSGKS+L M+++ +P GKI G
Sbjct: 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG------------- 487
Query: 477 QIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVG 536
+I Q + GTI +NI++G++ S I E + + F T++G
Sbjct: 488 RISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEED----IALFPEKDKTVLG 543
Query: 537 ERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEY-LVQSAIEKLIEGKTVLT 595
E GI LSGGQ+ RI++ARA+ K + + LLD + LD E + +S + KL+ KT +
Sbjct: 544 EGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRIL 603
Query: 596 IAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLMKYQTMD 644
+ +L ++K+++I +L +G G+++ L + L+ + D
Sbjct: 604 VTSKLEHLKKADKILLLHEGVCYFYGTFSELQAKRPDFSSLLLGLEAFD 652
>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit.
This model describes the ATP binding subunit of the
multisubunit cobalt transporter in bacteria and its
equivalents in archaea. The model is restricted to ATP
subunit that is a part of the cobalt transporter, which
belongs to the ABC transporter superfamily (ATP Binding
Cassette). The model excludes ATP binding subunit that
are associated with other transporters belonging to ABC
transporter superfamily. This superfamily includes two
groups, one which catalyze the uptake of small
molecules, including ions from the external milieu and
the other group which is engaged in the efflux of small
molecular weight compounds and ions from within the
cell. Energy derived from the hydrolysis of ATP drive
the both the process of uptake and efflux [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 190
Score = 99.8 bits (249), Expect = 4e-24
Identities = 59/197 (29%), Positives = 99/197 (50%), Gaps = 19/197 (9%)
Query: 409 YPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDG--VDI 466
YP P+ L L+ + G + +++G++G+GKSTL + L L PQ+G +LIDG +D
Sbjct: 1 YPGGPEV--LKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDY 58
Query: 467 KELDPMYLRSQIGSVSQEP--TLFSGTIYENILYGVNDSSSVTKSDIIHA-AKEANAYGF 523
+ R ++G V Q+P LF+ + +++ +G + + +EA
Sbjct: 59 SRKGLLERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLG--LSEAEVERRVREALTAVG 116
Query: 524 VIDFKNGFDTIVGERGI-MLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQS 582
+ ER LSGG+K+R+AIA A+ + +LLLDE T+ LD + +
Sbjct: 117 ASGLR--------ERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLA 168
Query: 583 AIEKLI-EGKTVLTIAH 598
+ +L EG TV+ H
Sbjct: 169 ILRRLRAEGMTVVISTH 185
>gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 101 bits (252), Expect = 5e-24
Identities = 72/221 (32%), Positives = 114/221 (51%), Gaps = 11/221 (4%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD-----PQNGKILIDGVDI--KELD 470
L+ +SL + +T++IG SG GKST L R+ D G+I +G +I ++D
Sbjct: 20 LHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMD 79
Query: 471 PMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNG 530
+ LR ++G V Q+PT F ++Y+N+ YG+ + V ++I E + I +K
Sbjct: 80 LVELRKEVGMVFQQPTPFPFSVYDNVAYGLK-IAGVKDKELIDQRVEESLKQAAI-WKET 137
Query: 531 FDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEG 590
D + SGGQ+QRI IARAL + K++LLDE TSALD + ++ + +L
Sbjct: 138 KDNL-DRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQ 196
Query: 591 KTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHLIKNP 630
T + + H L R S+Q L G ++E G + P
Sbjct: 197 YTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMFIAP 237
>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter,
ATP-binding protein. Members of this family are the
ATP-binding protein of a conserved four gene ABC
transporter operon found next to ectoine unilization
operons and ectoine biosynthesis operons. Ectoine is a
compatible solute that protects enzymes from high
osmolarity. It is released by some species in response
to hypoosmotic shock, and it is taken up by a number of
bacteria as a compatible solute or for consumption. This
family shows strong sequence similiarity to a number of
amino acid ABC transporter ATP-binding proteins.
Length = 252
Score = 101 bits (252), Expect = 7e-24
Identities = 74/234 (31%), Positives = 117/234 (50%), Gaps = 30/234 (12%)
Query: 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDG------------- 463
+L+ L+ + +G ++IG SGSGKST+ +L+ L G+I ++G
Sbjct: 15 VLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPL 74
Query: 464 --VDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAY 521
D K L M R++IG V Q LF ++ +L V ++ + + A E A
Sbjct: 75 VPADEKHLRQM--RNKIGMVFQSFNLFP---HKTVLDNVTEAPVLVLG-MARAEAEKRA- 127
Query: 522 GFVIDFKN--GFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYL 579
++ + G LSGGQ+QR+AIARAL + K++L DE TSALD E
Sbjct: 128 ---MELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGE 184
Query: 580 VQSAIEKLI-EGK-TVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLIKNP 630
V + I +L E T+L + H + R+ ++++C DKG+IVE G + + P
Sbjct: 185 VLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEIFRQP 238
>gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette
domain of the molybdenum transport system. ModC is an
ABC-type transporter and the ATPase component of a
molybdate transport system that also includes the
periplasmic binding protein ModA and the membrane
protein ModB. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 214
Score = 99.3 bits (248), Expect = 9e-24
Identities = 63/215 (29%), Positives = 111/215 (51%), Gaps = 21/215 (9%)
Query: 418 LNDLSLKIQ---SGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDI----KELD 470
L D +LKI + +T + G+SG+GKSTL + L P G I+++G + K+++
Sbjct: 10 LPDFTLKIDFDLNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKIN 69
Query: 471 PMYLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKN 529
+ +IG V Q+ LF + EN+ +G+ + + D I + + G
Sbjct: 70 LPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRKRN--REDRISVDELLDLLGL------ 121
Query: 530 GFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE 589
D ++ LSGG+KQR+A+ARAL + ++LLLDE SALD + ++++ +
Sbjct: 122 --DHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKK 179
Query: 590 --GKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIG 621
V+ + H LS +++I V++ G++ IG
Sbjct: 180 NLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter
subunit; Provisional.
Length = 257
Score = 100 bits (249), Expect = 1e-23
Identities = 81/233 (34%), Positives = 122/233 (52%), Gaps = 24/233 (10%)
Query: 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDI---------- 466
+L +SL+ +G + S+IGSSGSGKST + L P G I+++G I
Sbjct: 20 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQL 79
Query: 467 KELDP---MYLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYG 522
K D LR+++ V Q L+S T+ EN++ ++K + A + A Y
Sbjct: 80 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQE---ARERAVKY- 135
Query: 523 FVIDFKNGFDTIV-GERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQ 581
+ K G D G+ + LSGGQ+QR++IARAL + ++LL DE TSALD E V
Sbjct: 136 --LA-KVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVL 192
Query: 582 SAIEKLI-EGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLIKNPNS 632
+++L EGKT++ + H + R S+ + L +GKI E G+ L NP S
Sbjct: 193 RIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLFGNPQS 245
>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit;
Provisional.
Length = 242
Score = 99.7 bits (249), Expect = 1e-23
Identities = 69/237 (29%), Positives = 116/237 (48%), Gaps = 23/237 (9%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
I N I Y + L D++L G ++G SG+GKS+L +L L P++G +
Sbjct: 3 IQLNGINCFYGAHQ---ALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTL 59
Query: 460 LIDG--------VDIKELDPMYLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSD 510
I G K + LR +G V Q+ L+ T+ +N++ ++K
Sbjct: 60 NIAGNHFDFSKTPSDKAI--RELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQ 117
Query: 511 IIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATS 570
+ A++ + + + F + LSGGQ+QR+AIARAL+ + ++LL DE T+
Sbjct: 118 ALARAEKLLERLRLKPYADRFP-------LHLSGGQQQRVAIARALMMEPQVLLFDEPTA 170
Query: 571 ALDAENEYLVQSAIEKLIE-GKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAH 625
ALD E + S I +L E G T + + H + RK ++++ ++ G IVE G +
Sbjct: 171 ALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASC 227
>gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI;
Provisional.
Length = 340
Score = 101 bits (254), Expect = 2e-23
Identities = 75/231 (32%), Positives = 116/231 (50%), Gaps = 30/231 (12%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
ID + SY D ++N LS + SG ++G +G+GKST+A ++L + P GKI
Sbjct: 42 IDLAGVSKSYG---DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKI 98
Query: 460 LIDGVDIKELDPMYLRSQIGSVSQEPTL-FSGTIYENIL-YG------VNDSSSVTKSDI 511
+ GV + R++IG V Q L T+ EN+L +G + +V S +
Sbjct: 99 TVLGVPVPA-RARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLL 157
Query: 512 IHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSA 571
A E+ A D V + LSGG K+R+ +ARALI ++L+LDE T+
Sbjct: 158 EFARLESKA-----------DARVSD----LSGGMKRRLTLARALINDPQLLILDEPTTG 202
Query: 572 LDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTI-RKSNQICVLDKG-KIVE 619
LD +L+ + L+ GKT+L H + R +++CVL+ G KI E
Sbjct: 203 LDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAE 253
>gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 99.7 bits (248), Expect = 2e-23
Identities = 67/221 (30%), Positives = 119/221 (53%), Gaps = 14/221 (6%)
Query: 420 DLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQ-----NGKILIDGVDIKE--LDPM 472
+++L +Q G++ ++IG SG GK+T + R++D G+IL+DG DI +DP+
Sbjct: 22 NVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPV 81
Query: 473 YLRSQIGSVSQEPTLF-SGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVID-FKNG 530
+R ++G V Q+P F + ++++N++ G+ + + ++ A+ + + D K+
Sbjct: 82 AMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDR 141
Query: 531 FDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEG 590
T LSGGQ+QR+ IARAL + +ILL+DE TSALD + ++ + L +
Sbjct: 142 LKT----PATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKV 197
Query: 591 KTVLTIAHRL-STIRKSNQICVLDKGKIVEIGSYAHLIKNP 630
T++ + H + R S+ G +VE G L NP
Sbjct: 198 TTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQLFTNP 238
>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 99.8 bits (249), Expect = 2e-23
Identities = 76/236 (32%), Positives = 125/236 (52%), Gaps = 23/236 (9%)
Query: 400 IDFNNIRFSYPS-RP-DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNG 457
I+ N+ ++Y + P + L D++L I+ GS T+ IG +GSGKST+ LL L+ P G
Sbjct: 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQG 62
Query: 458 KILIDGVDI----KELDPMYLRSQIGSVSQ--EPTLFSGTIYENILYGVNDSSSVTKSDI 511
+ +D I K D +R ++G V Q E LF T+ +++ +G + V++ +
Sbjct: 63 SVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQN-FGVSQEEA 121
Query: 512 IHAAKEANAY-GFVIDF--KNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEA 568
A+E A G KN F+ LSGGQ +R+AIA L + KIL+LDE
Sbjct: 122 EALAREKLALVGISESLFEKNPFE---------LSGGQMRRVAIAGILAMEPKILVLDEP 172
Query: 569 TSALDAENEYLVQSAIEKLIE-GKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGS 622
T+ LD + + + +KL + G T++ + H + + ++ + VL+KGK+V G
Sbjct: 173 TAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGK 228
>gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 286
Score = 99 bits (249), Expect = 3e-23
Identities = 74/220 (33%), Positives = 116/220 (52%), Gaps = 23/220 (10%)
Query: 425 IQSGSMTSVIGSSGSGKSTLAMLLLRLYD--PQ---NGKILIDGVDI--KELDPMYLRSQ 477
I S +T++IG SG GKST + R+ D P G ++ DG DI K D + LR +
Sbjct: 62 ILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKK 121
Query: 478 IGSVSQEPTLFSGTIYENI-----LYGVNDSSSVTKSDIIHAA-KEANAYGFVIDFKNGF 531
IG V Q+P F +I++NI L+G+ND + +I+ + ++A + V D
Sbjct: 122 IGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQL--EEIVEKSLRKAALWDEVSDR---- 175
Query: 532 DTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGK 591
+ + + LSGGQ+QR+ +AR L + +ILLLDE TSALD + ++ I++L
Sbjct: 176 ---LDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSY 232
Query: 592 TVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHLIKNP 630
T++ + H + R S+ +G +VE A L NP
Sbjct: 233 TIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQLFTNP 272
>gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the
sulfonylurea receptor, subfamily C. The SUR domain 1.
The sulfonylurea receptor SUR is an ATP transporter of
the ABCC/MRP family with tandem ATPase binding domains.
Unlike other ABC proteins, it has no intrinsic transport
function, neither active nor passive, but associates
with the potassium channel proteins Kir6.1 or Kir6.2 to
form the ATP-sensitive potassium (K(ATP)) channel.
Within the channel complex, SUR serves as a regulatory
subunit that fine-tunes the gating of Kir6.x in response
to alterations in cellular metabolism. It constitutes a
major pharmaceutical target as it binds numerous drugs,
K(ATP) channel openers and blockers, capable of up- or
down-regulating channel activity.
Length = 218
Score = 98.2 bits (244), Expect = 3e-23
Identities = 64/211 (30%), Positives = 110/211 (52%), Gaps = 13/211 (6%)
Query: 413 PDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPM 472
L++++++I +G +T ++G G GKS+L + +L GK+ + E
Sbjct: 12 SGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFE 71
Query: 473 YLRSQ----IGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVID-F 527
RS+ + +Q+P L + T+ ENI +G S A +A + ID
Sbjct: 72 ATRSRNRYSVAYAAQKPWLLNATVEENITFG-----SPFNKQRYKAVTDACSLQPDIDLL 126
Query: 528 KNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAE-NEYLVQSAIEK 586
G T +GERGI LSGGQ+QRI +ARAL + + I+ LD+ SALD +++L+Q I K
Sbjct: 127 PFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILK 186
Query: 587 LI--EGKTVLTIAHRLSTIRKSNQICVLDKG 615
+ + +T++ + H+L + ++ I + G
Sbjct: 187 FLQDDKRTLVLVTHKLQYLPHADWIIAMKDG 217
>gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein;
Provisional.
Length = 264
Score = 99.1 bits (247), Expect = 4e-23
Identities = 59/196 (30%), Positives = 103/196 (52%), Gaps = 24/196 (12%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQN---------GKILIDGVDI-- 466
+ ++ L I +T+ IG SG GKST+ LR ++ N GK+ G ++
Sbjct: 26 VKNVWLDIPKNQITAFIGPSGCGKSTI----LRCFNRLNDLIPGFRVEGKVTFHGKNLYA 81
Query: 467 KELDPMYLRSQIGSVSQEPTLFSGTIYENILYG--VNDSSSVTKSDIIHAAKEANAYGFV 524
++DP+ +R +IG V Q+P F +IY+NI YG +N + + ++A + V
Sbjct: 82 PDVDPVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEV 141
Query: 525 IDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAI 584
D + G+ LSGGQ+QR+ IARA+ + +++L+DE SALD + ++ +
Sbjct: 142 KDKLK-------QSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELM 194
Query: 585 EKLIEGKTVLTIAHRL 600
+L E T++ + H +
Sbjct: 195 HELKEQYTIIIVTHNM 210
>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD.
This family represents the NikD subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase.
NikD and NikE are homologous [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 230
Score = 97.8 bits (244), Expect = 4e-23
Identities = 66/231 (28%), Positives = 114/231 (49%), Gaps = 25/231 (10%)
Query: 420 DLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQ----NGKILIDGVDIKELDPMYLR 475
DL+L ++ G + +++G SGSGKS + +L L P +G+IL+DG + L P+ +R
Sbjct: 4 DLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDG---RPLLPLSIR 60
Query: 476 S-QIGSVSQEPT-----LFS-GTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFK 528
I ++ Q P LF+ G L + S ++ I+ A +
Sbjct: 61 GRHIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVG-------LP 113
Query: 529 NGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI 588
+ + ++ + LSGG QR+ IA AL+ + L+ DE T+ LD N+ V + +L
Sbjct: 114 DP-EEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELR 172
Query: 589 E--GKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNK 636
+ G +L I H L + R ++++ V+D G+IVE G+ + NP +
Sbjct: 173 QLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNPKHETTR 223
>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 98.5 bits (246), Expect = 5e-23
Identities = 66/227 (29%), Positives = 104/227 (45%), Gaps = 43/227 (18%)
Query: 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRS 476
ILNDLSL + +G +T++IG +G GKSTL RL PQ+G + + I L L
Sbjct: 17 ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLAR 76
Query: 477 QIGSVSQEPTLFSG-TIYENILYG------------VNDSSSVTKSDIIHAAKEANAYGF 523
++ + Q G T+ E + YG D++ V + A E
Sbjct: 77 RLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQ------AME------ 124
Query: 524 VIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSA 583
+ + + R LSGGQ+QR +A L + + ++LLDE T+ LD ++ +
Sbjct: 125 ----QTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRL 180
Query: 584 IEKL-IEGKTVLTIAHRLSTIRKSNQIC-------VLDKGKIVEIGS 622
+ +L +GKTV+T+ H L NQ VL G ++ G+
Sbjct: 181 MRELNTQGKTVVTVLHDL------NQASRYCDHLVVLANGHVMAQGT 221
>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding
subunit; Provisional.
Length = 400
Score = 101 bits (252), Expect = 5e-23
Identities = 71/221 (32%), Positives = 119/221 (53%), Gaps = 16/221 (7%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRS- 476
+ D SL I+ G + ++G SGSGKST+ LL RL +P G++LIDGVDI ++ LR
Sbjct: 44 VKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREV 103
Query: 477 ---QIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFD 532
+I V Q L T+ +N +G+ + + + + A +A + ++ + +
Sbjct: 104 RRKKIAMVFQSFALMPHMTVLDNTAFGM-ELAGINAEERREKALDALRQVGLENYAHSYP 162
Query: 533 TIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKL--IEG 590
LSGG +QR+ +ARAL ILL+DEA SALD +Q + KL
Sbjct: 163 D-------ELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQ 215
Query: 591 KTVLTIAHRL-STIRKSNQICVLDKGKIVEIGSYAHLIKNP 630
+T++ I+H L +R ++I ++ G++V++G+ ++ NP
Sbjct: 216 RTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNP 256
>gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of
the Na+ transporter. NatA is the ATPase component of a
bacterial ABC-type Na+ transport system called NatAB,
which catalyzes ATP-dependent electrogenic Na+ extrusion
without mechanically coupled proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilis, NatAB is inducible by agents
such as ethanol and protonophores, which lower the
proton-motive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunorubicin- and doxorubicin-efflux
system. Hence, the functional NatAB is presumably
assembled with two copies of a single ATP-binding
protein and a single integral membrane protein.
Length = 218
Score = 97.4 bits (243), Expect = 6e-23
Identities = 66/224 (29%), Positives = 110/224 (49%), Gaps = 23/224 (10%)
Query: 406 RFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVD 465
RF + ++ +S ++ G +T ++G +G+GK+T +L L +P G +DG D
Sbjct: 10 RFRDVKKTVQA-VDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFD 68
Query: 466 IKELDPMYLRSQIGSVSQEPTLFSG-TIYENI-----LYGVNDSSSVTKSDIIHAAKEAN 519
+ + +P R ++G VS L+ T EN+ LYG+ K D + A E
Sbjct: 69 VVK-EPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGL-------KGDELTARLEEL 120
Query: 520 AYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYL 579
A + + D VG S G +Q++AIARAL+ +LLLDE T+ LD
Sbjct: 121 AD--RLGMEELLDRRVGG----FSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRA 174
Query: 580 VQSAIEKLIE-GKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIG 621
++ I +L GK +L H + + R +++ VL +G++V G
Sbjct: 175 LREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218
>gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 269
Score = 98.7 bits (246), Expect = 6e-23
Identities = 66/210 (31%), Positives = 111/210 (52%), Gaps = 19/210 (9%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD-----P 454
I N+ SY + +AV ++ I G +T++IG SG GKST+ L R+ D
Sbjct: 14 ISLQNVTISYGTF-EAV--KNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCS 70
Query: 455 QNGKILIDGVDI--KELDPMYLRSQIGSVSQEPTLFSGTIYENILYG--VNDSSSVTKSD 510
G++L DG D+ +DP+ +R +IG V Q+P F +IYENI +G +N +
Sbjct: 71 LKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDEL 130
Query: 511 IIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATS 570
+ + ++A + D N E G LSGGQ+QR+ IAR + + +++L+DE S
Sbjct: 131 VERSLRKAAVWDECKDKLN-------ESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCS 183
Query: 571 ALDAENEYLVQSAIEKLIEGKTVLTIAHRL 600
ALD + ++ + +L + T++ + H +
Sbjct: 184 ALDPISTLKIEETMHELKKNFTIVIVTHNM 213
>gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG
transporter subfamily. The White subfamily represents
ABC transporters homologous to the Drosophila white
gene, which acts as a dimeric importer for eye pigment
precursors. The eye pigmentation of Drosophila is
developed from the synthesis and deposition in the cells
of red pigments, which are synthesized from guanine, and
brown pigments, which are synthesized from tryptophan.
The pigment precursors are encoded by the white, brown,
and scarlet genes, respectively. Evidence from genetic
and biochemical studies suggest that the White and Brown
proteins function as heterodimers to import guanine,
while the White and Scarlet proteins function to import
tryptophan. However, a recent study also suggests that
White may be involved in the transport of a metabolite,
such as 3-hydroxykynurenine, across intracellular
membranes. Mammalian ABC transporters belonging to the
White subfamily (ABCG1, ABCG5, and ABCG8) have been
shown to be involved in the regulation of
lipid-trafficking mechanisms in macrophages,
hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8),
the human homolog of the Drosophila white gene is
induced in monocyte-derived macrophages during
cholesterol influx mediated by acetylated low-density
lipoprotein. It is possible that human ABCG1 forms
heterodimers with several heterologous partners.
Length = 226
Score = 97.0 bits (242), Expect = 8e-23
Identities = 65/220 (29%), Positives = 108/220 (49%), Gaps = 20/220 (9%)
Query: 412 RPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLL---LRLYDPQNGKILIDGVDIKE 468
A ILND+SL ++SG + +++GSSGSGK+TL + + +G+IL +G +
Sbjct: 17 NKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNG---QP 73
Query: 469 LDPMYLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDF 527
P + + V Q+ L G T+ E + Y SD I + +
Sbjct: 74 RKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVE-----DVLL 128
Query: 528 KNGFDTIVGE---RGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAI 584
++ T +G +GI SGG+++R++IA L+ K+L+LDE TS LD+ + S +
Sbjct: 129 RDLALTRIGGNLVKGI--SGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTL 186
Query: 585 EKLI-EGKTVLTIAH--RLSTIRKSNQICVLDKGKIVEIG 621
+L + V+ H R R ++I +L G+IV G
Sbjct: 187 SQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226
>gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component
[Amino acid transport and metabolism].
Length = 242
Score = 97.6 bits (243), Expect = 8e-23
Identities = 69/250 (27%), Positives = 120/250 (48%), Gaps = 19/250 (7%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
I N I Y + L D++L G ++G SG+GKS+L +L L P++G +
Sbjct: 3 IQLNGINCFYGAHQ---ALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTL 59
Query: 460 LIDGVDIK------ELDPMYLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDII 512
I G + LR +G V Q+ L+ T+ EN++ ++K +
Sbjct: 60 NIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQAL 119
Query: 513 HAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSAL 572
A++ + + + + + LSGGQ+QR+AIARAL+ + ++LL DE T+AL
Sbjct: 120 ARAEKLLKRLRLKPYADRYP-------LHLSGGQQQRVAIARALMMEPQVLLFDEPTAAL 172
Query: 573 DAENEYLVQSAIEKLIE-GKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLIKNP 630
D E + S I++L E G T + + H + RK ++++ ++ G IVE G + +
Sbjct: 173 DPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFTEPQ 232
Query: 631 NSMFNKLMKY 640
F + +
Sbjct: 233 TEAFKNYLSH 242
>gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of
CFTR,subfamily C. The cystic fibrosis transmembrane
regulator (CFTR), the product of the gene mutated in
patients with cystic fibrosis, has adapted the ABC
transporter structural motif to form a tightly regulated
anion channel at the apical surface of many epithelia.
Use of the term assembly of a functional ion channel
implies the coming together of subunits or at least
smaller not-yet functional components of the active
whole. In fact, on the basis of current knowledge only
the CFTR polypeptide itself is required to form an ATP-
and protein kinase A-dependent low-conductance chloride
channel of the type present in the apical membrane of
many epithelial cells. CFTR displays the typical
organization (IM-ABC)2 and carries a characteristic
hydrophilic R-domain that separates IM1-ABC1 from
IM2-ABC2.
Length = 275
Score = 98.4 bits (245), Expect = 8e-23
Identities = 67/239 (28%), Positives = 120/239 (50%), Gaps = 7/239 (2%)
Query: 398 GEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNG 457
G++ ++ Y +AV L ++S I G ++G +GSGKSTL LRL + + G
Sbjct: 1 GQMTVKDLTAKYTEGGNAV-LENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE-G 58
Query: 458 KILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKE 517
I IDGV + R G + Q+ +FSGT +N+ + + +I A+E
Sbjct: 59 DIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNL----DPYGKWSDEEIWKVAEE 114
Query: 518 ANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENE 577
+ F D ++ + G +LS G KQ + +AR+++ K+KILLLDE ++ LD
Sbjct: 115 VGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITY 174
Query: 578 YLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNK 636
+++ +++ TV+ HR+ + + + V+++ K+ + S L+ N S F +
Sbjct: 175 QVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLL-NEKSHFKQ 232
>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 275
Score = 98.2 bits (245), Expect = 9e-23
Identities = 73/246 (29%), Positives = 129/246 (52%), Gaps = 28/246 (11%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
++ ++++SYP L ++ K + G M +++G +G+GKSTL + + P +G++
Sbjct: 2 LETRDLKYSYPD--GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEV 59
Query: 460 LIDGVDIK--ELDPMYLRSQIGSVSQEP--TLFSGTIYENILYG-VNDSSSVTKSDIIHA 514
LI G IK + + +R +G V Q P LF+ T+ E++ +G +N ++K ++
Sbjct: 60 LIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLN--LGLSKEEVEKR 117
Query: 515 AKEA-NAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALD 573
KEA A G GF+ LSGGQK+R+AIA L K +I++LDE TS LD
Sbjct: 118 VKEALKAVGM-----EGFENKPPHH---LSGGQKKRVAIAGILAMKPEIIVLDEPTSGLD 169
Query: 574 AENEYLVQSAIEKLI-----EGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLI 627
S I KL+ EG T++ H + + ++++ V+ GKI++ G+ +
Sbjct: 170 PMG----ASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVF 225
Query: 628 KNPNSM 633
+ ++
Sbjct: 226 SDIETI 231
>gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 97.2 bits (242), Expect = 1e-22
Identities = 76/249 (30%), Positives = 125/249 (50%), Gaps = 24/249 (9%)
Query: 396 LKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQ 455
+K I+ N+R Y S ++ + LKI + +++G SG GKSTL RL +
Sbjct: 1 MKFAIETVNLRVYYGSNH---VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELN 57
Query: 456 -----NGKILIDGVDI--KELDPMYLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVT 507
G++ + G +I ++DP+ +R ++G V Q P F TIY+N+ GV + V
Sbjct: 58 EEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVK 117
Query: 508 KSDIIH-----AAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKI 562
+ A K+A + V D N + + LSGGQ+QR+ IARAL K KI
Sbjct: 118 SKKELDERVEWALKKAALWDEVKDRLNDYPS-------NLSGGQRQRLVIARALAMKPKI 170
Query: 563 LLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHR-LSTIRKSNQICVLDKGKIVEIG 621
LL+DE T+ +D ++ + +L + T++ + H R S+ + L GK++E+G
Sbjct: 171 LLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVG 230
Query: 622 SYAHLIKNP 630
+ +NP
Sbjct: 231 PTRKVFENP 239
>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation
protein NodI. This protein is required for normal
nodulation by nitrogen-fixing root nodule bacteria such
as Mesorhizobium loti. It is a member of the family of
ABC transporter ATP binding proteins and works with NodJ
to export a nodulation signal molecule. This model does
not recognize the highly divergent NodI from
Azorhizobium caulinodans [Cellular processes, Other,
Transport and binding proteins, Other].
Length = 303
Score = 98.5 bits (245), Expect = 1e-22
Identities = 72/225 (32%), Positives = 113/225 (50%), Gaps = 18/225 (8%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
ID + SY D V++NDLS I G ++G +G+GKST+A +LL + P GKI
Sbjct: 5 IDLVGVSKSYG---DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKI 61
Query: 460 LIDGVDIKELDPMYLRSQIGSVSQEPTL-FSGTIYENIL-YGVNDSSSVTKSDIIHAAKE 517
+ G + R IG V Q L T+ EN+L +G + + +
Sbjct: 62 TVLGEPVPS-RARLARVAIGVVPQFDNLDPEFTVRENLLVFG--------RYFGMSTREI 112
Query: 518 ANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENE 577
+++F ++ R +LSGG K+R+ +ARALI ++L+LDE T+ LD
Sbjct: 113 EAVIPSLLEFAR-LESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHAR 171
Query: 578 YLVQSAIEKLI-EGKTVLTIAHRLSTI-RKSNQICVLDKG-KIVE 619
+L+ + L+ GKT+L H + R +++CVL+ G KI E
Sbjct: 172 HLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAE 216
>gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 97.9 bits (244), Expect = 1e-22
Identities = 65/245 (26%), Positives = 126/245 (51%), Gaps = 22/245 (8%)
Query: 400 IDFNNIRFSYPSRPDA---VILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQN 456
I N+ + Y S ++ + L+D++L+++ G ++G +GSGKST+A + L P
Sbjct: 5 IKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSE 64
Query: 457 GKILIDGVDIKELDPMY-LRSQIGSVSQEP--TLFSGTIYENILYGVND---SSSVTKSD 510
GK+ +DG+D + + ++ +R++ G V Q P + + + E++ +G + +
Sbjct: 65 GKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRER 124
Query: 511 IIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATS 570
+ + K+ Y +++ +LSGGQKQR+AIA L + + ++ DE T+
Sbjct: 125 VDESLKKVGMY----EYRR-------HAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTA 173
Query: 571 ALDAENEYLVQSAIEKL--IEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIK 628
LD V + I++L G T++ I H + ++++I V+D GK+V G+ + K
Sbjct: 174 MLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIFK 233
Query: 629 NPNSM 633
M
Sbjct: 234 EVEMM 238
>gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE;
Provisional.
Length = 268
Score = 97.5 bits (243), Expect = 1e-22
Identities = 66/224 (29%), Positives = 116/224 (51%), Gaps = 29/224 (12%)
Query: 412 RPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDP 471
+LN++SL ++SG +++G SG GKSTLA LL+ L P G + G + +L+
Sbjct: 22 HQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLN- 80
Query: 472 MYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKS---------DIIHAAKEANAYG 522
R+Q + ++ + ++++ + VN +V + + A + A A
Sbjct: 81 ---RAQRKAFRRDIQM----VFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARA-S 132
Query: 523 FVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQS 582
++ + D+++ +R LSGGQ QR+ +ARAL + K+L+LDEA S LD ++Q+
Sbjct: 133 EMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLD----LVLQA 188
Query: 583 AIEKLIE------GKTVLTIAHRLSTIRKSNQIC-VLDKGKIVE 619
+ +L++ G L I H L + + Q V+D G+IVE
Sbjct: 189 GVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVE 232
>gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding
protein UrtE. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 230
Score = 96.4 bits (241), Expect = 1e-22
Identities = 68/218 (31%), Positives = 109/218 (50%), Gaps = 21/218 (9%)
Query: 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYL-R 475
IL +SL++ G +T V+G +G GK+TL L+ L ++G I +DG DI +L P R
Sbjct: 15 ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERAR 74
Query: 476 SQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYG-FVI--DFKNGF 531
+ I V Q +F T+ EN+L G+ + I Y F + +
Sbjct: 75 AGIAYVPQGREIFPRLTVEENLLTGL-AALPRRSRKIP-----DEIYELFPVLKEMLG-- 126
Query: 532 DTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE-- 589
RG LSGGQ+Q++AIARAL+ + K+LLLDE T + + I +L
Sbjct: 127 -----RRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEG 181
Query: 590 GKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHL 626
G +L + L R+ +++ V+++G++V G+ L
Sbjct: 182 GMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219
>gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 286
Score = 97.5 bits (243), Expect = 2e-22
Identities = 71/261 (27%), Positives = 125/261 (47%), Gaps = 45/261 (17%)
Query: 400 IDFNNIRFSY----PSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQ 455
I F+N+ ++Y P A ++D++ + + G +++G +GSGKSTL + L P
Sbjct: 3 IRFDNVSYTYQKGTPYEHQA--IHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPT 60
Query: 456 NGKILIDGVDI------KELDPMYLRSQIGSVSQ--EPTLFSGTIYENILYGVNDSSSVT 507
G + +D + I K + P +R +IG V Q E LF T+ I++G +
Sbjct: 61 TGTVTVDDITITHKTKDKYIRP--VRKRIGMVFQFPESQLFEDTVEREIIFGPKN----F 114
Query: 508 KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIM------LSGGQKQRIAIARALIKKSK 561
K ++ E Y + GF R +M +SGGQ ++IAI L
Sbjct: 115 KMNL----DEVKNYAHRLLMDLGF-----SRDVMSQSPFQMSGGQMRKIAIVSILAMNPD 165
Query: 562 ILLLDEATSALDAENEYLVQSAIEKLI--EGKTVLTIAHRLSTI-RKSNQICVLDKGKIV 618
I++LDE T+ LD +++ V ++ L E KT++ ++H ++ + R ++++ V+ +G IV
Sbjct: 166 IIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIV 225
Query: 619 EIGSYAHLIKNPNSMFNKLMK 639
S P +F K
Sbjct: 226 SQTS-------PKELFKDKKK 239
>gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 268
Score = 97.0 bits (241), Expect = 2e-22
Identities = 67/221 (30%), Positives = 114/221 (51%), Gaps = 11/221 (4%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD-----PQNGKILIDGVDI--KELD 470
+ND+S+ I+ ++T++IG SG GKST + R+ D G+IL +G++I ++
Sbjct: 37 VNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNIN 96
Query: 471 PMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNG 530
+ LR +IG V Q+P F +IY NI + + + KS + +E+ + D
Sbjct: 97 VVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWD---E 153
Query: 531 FDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEG 590
+ + LSGGQ+QR+ IAR L K +LLLDE SALD + ++ I +L E
Sbjct: 154 VKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEE 213
Query: 591 KTVLTIAHRL-STIRKSNQICVLDKGKIVEIGSYAHLIKNP 630
+++ + H + +R S++ G +VE + +P
Sbjct: 214 YSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIFTSP 254
>gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase
component [General function prediction only].
Length = 243
Score = 96.1 bits (240), Expect = 3e-22
Identities = 69/239 (28%), Positives = 127/239 (53%), Gaps = 29/239 (12%)
Query: 404 NIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDG 463
N+ SY R ++ND+SL++ SG + ++G +G+GK+T +++ L P +GKIL+D
Sbjct: 9 NLAKSYKKRK---VVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDD 65
Query: 464 VDIKELDPMYLRSQ--IGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANA 520
DI +L PM+ R++ IG + QE ++F T+ +NI+ + + + D+ A ++
Sbjct: 66 EDITKL-PMHKRARLGIGYLPQEASIFRKLTVEDNIMAVL----EIREKDLKKAERKEEL 120
Query: 521 YGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLV 580
+ +F + + LSGG+++R+ IARAL K +LLDE + +D +
Sbjct: 121 DALLEEF--HITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDP----IA 174
Query: 581 QSAIEKLIE-----GKTVLTIAHRLSTIRKSNQIC----VLDKGKIVEIGSYAHLIKNP 630
I+++I+ G VL H +R++ IC ++ GK++ GS ++ N
Sbjct: 175 VIDIQRIIKHLKDRGIGVLITDH---NVRETLDICDRAYIISDGKVLAEGSPEEIVNNE 230
>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein
YejF; Provisional.
Length = 529
Score = 100 bits (251), Expect = 3e-22
Identities = 79/252 (31%), Positives = 123/252 (48%), Gaps = 31/252 (12%)
Query: 400 IDFNNIRFSYPSRP--------DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRL 451
+D ++ ++P R V++ ++S ++ G ++G SGSGKST + LLRL
Sbjct: 276 LDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRL 335
Query: 452 YDPQNGKILIDGVDIKELDP---MYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTK 508
+ Q G+I DG + L+ + +R +I V Q+P S N+L + + V +
Sbjct: 336 INSQ-GEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPN-SSLNPRLNVLQIIEEGLRVHQ 393
Query: 509 SDIIHAAKEANAYGFVIDFKN--GFDTIVGER-GIMLSGGQKQRIAIARALIKKSKILLL 565
+ A +E VI G D R SGGQ+QRIAIARALI K +++L
Sbjct: 394 PTLSAAQREQQ----VIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIIL 449
Query: 566 DEATSALDAENEYLVQSAIEKLIEGK------TVLTIAHRLSTIRK-SNQICVLDKGKIV 618
DE TS+LD VQ+ I L++ L I+H L +R +Q+ VL +G++V
Sbjct: 450 DEPTSSLDKT----VQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVV 505
Query: 619 EIGSYAHLIKNP 630
E G + P
Sbjct: 506 EQGDCERVFAAP 517
Score = 81.7 bits (202), Expect = 3e-16
Identities = 72/248 (29%), Positives = 115/248 (46%), Gaps = 57/248 (22%)
Query: 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRL-------YDPQNGKILIDGVDIKEL 469
++ND+SL+I++G +++G SGSGKS A+ +LRL Y P G I G +
Sbjct: 24 VVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVY-PS-GDIRFHGESLLHA 81
Query: 470 DPMYLR----SQIGSVSQEPTLFSGTIY--ENILYGV-----NDSSSVTKSDII------ 512
LR ++I + QEP + ++ E LY V + +I+
Sbjct: 82 SEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRV 141
Query: 513 ---HAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEAT 569
AAK D+ + LSGG++QR+ IA AL+ + ++L+ DE T
Sbjct: 142 GIRQAAKRLT------DYPH-----------QLSGGERQRVMIAMALLTRPELLIADEPT 184
Query: 570 SALDAENEYLVQSAIEKLIE------GKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGS 622
+ALD VQ+ I +L+ +L I H LS +RK ++++ V+ G+ VE
Sbjct: 185 TALDVS----VQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNR 240
Query: 623 YAHLIKNP 630
A L P
Sbjct: 241 AATLFSAP 248
>gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 95.9 bits (238), Expect = 4e-22
Identities = 73/259 (28%), Positives = 124/259 (47%), Gaps = 32/259 (12%)
Query: 381 EPLISTSGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSG 440
+P I G FF H K ++ NI +P R +T++IG SG G
Sbjct: 2 DPKIKIRGVNFFYH--KHQV-LKNINMDFPER----------------QITAIIGPSGCG 42
Query: 441 KSTLAMLLLRLYDPQNG-----KILIDGVDI--KELDPMYLRSQIGSVSQEPTLFSGTIY 493
KSTL L R+ D +G +L+D +I LD + LR ++G V Q+P F +I+
Sbjct: 43 KSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIF 102
Query: 494 ENILYGVNDSSSVTKSDIIHAAKEANAYGFVID-FKNGFDTIVGERGIMLSGGQKQRIAI 552
+N+ +G + +S + +++ + D K+ + G+ LSGGQ+QR+ I
Sbjct: 103 DNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLH----KSGLALSGGQQQRLCI 158
Query: 553 ARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRL-STIRKSNQICV 611
AR L + +++L+DE SALD + ++ +++L + T+ + H + R S+
Sbjct: 159 ARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGF 218
Query: 612 LDKGKIVEIGSYAHLIKNP 630
L G +VE G + P
Sbjct: 219 LLTGDLVEYGRTGEIFSRP 237
>gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport
system. The ABC transporters belonging to the YhbG
family are similar to members of the Mj1267_LivG family,
which is involved in the transport of branched-chain
amino acids. The genes yhbG and yhbN are located in a
single operon and may function together in cell envelope
during biogenesis. YhbG is the putative ATP-binding
cassette component and YhbN is the putative
periplasmic-binding protein. Depletion of each gene
product leads to growth arrest, irreversible cell damage
and loss of viability in E. coli. The YhbG homolog
(NtrA) is essential in Rhizobium meliloti, a symbiotic
nitrogen-fixing bacterium.
Length = 232
Score = 95.3 bits (238), Expect = 4e-22
Identities = 70/235 (29%), Positives = 123/235 (52%), Gaps = 23/235 (9%)
Query: 404 NIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDG 463
N+ Y R ++N +SL ++ G + ++G +G+GK+T +++ L P +GKIL+DG
Sbjct: 5 NLSKRYGKRK---VVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDG 61
Query: 464 VDIKELDPMYLRSQ--IGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANA 520
DI +L PM+ R++ IG + QE ++F T+ ENIL V + ++K + +E
Sbjct: 62 QDITKL-PMHKRARLGIGYLPQEASIFRKLTVEENIL-AVLEIRGLSKKEREEKLEE--- 116
Query: 521 YGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLV 580
+ +F + + LSGG+++R+ IARAL K LLLDE + +D +
Sbjct: 117 --LLEEF--HITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDI 172
Query: 581 QSAIEKLIE-GKTVLTIAHRLSTIRKSNQIC----VLDKGKIVEIGSYAHLIKNP 630
Q I+ L + G VL H +R++ I ++ +GK++ G+ + N
Sbjct: 173 QKIIKILKDRGIGVLITDH---NVRETLSITDRAYIIYEGKVLAEGTPEEIAANE 224
>gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 96.0 bits (239), Expect = 6e-22
Identities = 68/227 (29%), Positives = 125/227 (55%), Gaps = 16/227 (7%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
I+ ++ F Y A L LSL I GS T+++G +G+GKSTL + L +Y PQ G++
Sbjct: 5 IEVEDLHFRYKDGTKA--LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRV 62
Query: 460 LIDGVDIKELDPMYLRSQIGSVSQEP--TLFSGTIYENILYG-VNDSSSVTKSDIIHAAK 516
+ G ++ + ++RS++G V Q+P +FS T+++++ +G VN + K ++ +
Sbjct: 63 KVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVN--MGLDKDEVERRVE 120
Query: 517 EANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAEN 576
EA + DF++ + LS GQK+R+AIA L +++LDE + LD
Sbjct: 121 EALKAVRMWDFRD-------KPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRG 173
Query: 577 EYLVQSAIEKL-IEGKTVLTIAHRLS-TIRKSNQICVLDKGKIVEIG 621
+ + +++L +GKTV+ H + ++Q+ VL +G+++ G
Sbjct: 174 QETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEG 220
>gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 329
Score = 96.7 bits (240), Expect = 7e-22
Identities = 76/249 (30%), Positives = 127/249 (51%), Gaps = 22/249 (8%)
Query: 401 DFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD-----PQ 455
+ N F Y +R V L+DL+L I+ +T+ IG SG GKST L +L D
Sbjct: 82 EIRNFNFWYMNRTKHV-LHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSH 140
Query: 456 NGKILIDGVDI--KELDPMYLRSQIGSVSQEPTLFSGTIYENILYG-----VNDSSSVTK 508
G+I G + K++ + LR++IG V Q+PT F +I++N+ YG +ND + K
Sbjct: 141 EGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEK 200
Query: 509 SDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEA 568
K + + K+ D + G LSGGQ+QR+ IARA+ + ++LL+DE
Sbjct: 201 I----VEKSLKSAALWDEVKDDLD----KAGNALSGGQQQRLCIARAIALEPEVLLMDEP 252
Query: 569 TSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLI 627
TSALD ++ I +L + +++ + H ++ ++ S++ +G I E G +
Sbjct: 253 TSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIF 312
Query: 628 KNPNSMFNK 636
+P + K
Sbjct: 313 IHPKNKRTK 321
>gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 94.7 bits (236), Expect = 9e-22
Identities = 59/216 (27%), Positives = 105/216 (48%), Gaps = 17/216 (7%)
Query: 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRS 476
+L+ +SL ++ G + +++G +G+GKSTL L P +G++ ++GV + P L
Sbjct: 16 LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELAR 75
Query: 477 QIGSVSQEPTL-FSGTIYENILYG-VNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTI 534
+ Q +L F T+ E + G + S + A +A A +
Sbjct: 76 HRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYR- 134
Query: 535 VGERGIMLSGGQKQRIAIARAL------IKKSKILLLDEATSALD-AENEYLVQSAIEKL 587
LSGG++QR+ +AR L + + L LDE TSALD A + ++ A +
Sbjct: 135 ------TLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLA 188
Query: 588 IEGKTVLTIAHRLS-TIRKSNQICVLDKGKIVEIGS 622
EG VL + H L+ + +++I +L +G+++ GS
Sbjct: 189 REGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGS 224
>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding
protein. This model represents LolD, a member of the
ABC transporter family (pfam00005). LolD is involved in
localization of lipoproteins in some bacteria. It works
with a transmembrane protein LolC, which in some species
is a paralogous pair LolC and LolE. Depending on whether
the residue immediately following the new, modified
N-terminal Cys residue, the nascent lipoprotein may be
carried further by LolA and LolB to the outer membrane,
or remain at the inner membrane. The top scoring
proteins excluded by this model include homologs from
the archaeal genus Methanosarcina [Protein fate, Protein
and peptide secretion and trafficking].
Length = 221
Score = 93.6 bits (233), Expect = 1e-21
Identities = 61/210 (29%), Positives = 106/210 (50%), Gaps = 15/210 (7%)
Query: 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKEL---DPMY 473
+L +SL I G + +++GSSGSGKSTL LL L +P +G++L +G + +L +
Sbjct: 20 VLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAK 79
Query: 474 LRSQ-IGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGF 531
LR++ +G + Q L T EN+ + K + A + A + ++
Sbjct: 80 LRNKKLGFIYQFHHLLPDFTALENVAM----PLLIGKKSVKEAKERAYEMLEKVGLEHRI 135
Query: 532 DTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKL-IEG 590
+ E LSGG++QR+AIARAL+ + ++L DE T LD N ++ + +L E
Sbjct: 136 NHRPSE----LSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNREL 191
Query: 591 KTVLTIA-HRLSTIRKSNQICVLDKGKIVE 619
T + H L +K +++ + G++
Sbjct: 192 NTSFLVVTHDLELAKKLDRVLEMKDGQLFN 221
>gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 94.3 bits (234), Expect = 1e-21
Identities = 69/237 (29%), Positives = 110/237 (46%), Gaps = 25/237 (10%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD-----PQNGKILIDGVDI--KELD 470
+ D + I+ +T IG SG GKST+ L R+ D G + G D+ K +D
Sbjct: 24 VRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVD 83
Query: 471 PMYLRSQIGSVSQEPTLFSGTIYENILYGV--NDSSSVTKSDIIHAAKEANAYGFVIDFK 528
P+ +R IG V Q+P FS +I++N+ +G+ N + HA + A + V D
Sbjct: 84 PVVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKD-- 141
Query: 529 NGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI 588
+ G+ LSGGQ+QR+ IARA+ + ++LLLDE SALD V+ + +L
Sbjct: 142 -----KLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELK 196
Query: 589 EGKTVLTIAHRLSTIRKSNQICVL---------DKGKIVEIGSYAHLIKNPNSMFNK 636
+ T+ + H + + G +VE+G A + +NP
Sbjct: 197 KDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQIFQNPREQLTS 253
>gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in
Fe-S cluster assembly, ATPase component. Biosynthesis
of iron-sulfur clusters (Fe-S) depends on multi-protein
systems. The SUF system of E. coli and Erwinia
chrysanthemi is important for Fe-S biogenesis under
stressful conditions. The SUF system is made of six
proteins: SufC is an atypical cytoplasmic ABC-ATPase,
which forms a complex with SufB and SufD; SufA plays the
role of a scaffold protein for assembly of iron-sulfur
clusters and delivery to target proteins; SufS is a
cysteine desulfurase which mobilizes the sulfur atom
from cysteine and provides it to the cluster; SufE has
no associated function yet.
Length = 200
Score = 92.6 bits (231), Expect = 1e-21
Identities = 67/213 (31%), Positives = 97/213 (45%), Gaps = 46/213 (21%)
Query: 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRL--YDPQNGKILIDGVDIKELDPMYL 474
IL ++L I+ G + +++G +GSGKSTLA ++ Y+ G+IL G DI +L P
Sbjct: 15 ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDL-PPEE 73
Query: 475 RSQ--IGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFD 532
R++ I Q P G + L VN GF
Sbjct: 74 RARLGIFLAFQYPPEIPGVKNADFLRYVN-------------------EGF--------- 105
Query: 533 TIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGK 591
SGG+K+R I + L+ + + +LDE S LD + LV I KL EGK
Sbjct: 106 ----------SGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGK 155
Query: 592 TVLTIAH--RLSTIRKSNQICVLDKGKIVEIGS 622
+VL I H RL K +++ VL G+IV+ G
Sbjct: 156 SVLIITHYQRLLDYIKPDRVHVLYDGRIVKSGD 188
>gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase
component/photorepair protein PhrA [Inorganic ion
transport and metabolism].
Length = 257
Score = 93.9 bits (234), Expect = 2e-21
Identities = 60/227 (26%), Positives = 103/227 (45%), Gaps = 14/227 (6%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
I+ N+ + IL DLS ++ G +++G +G+GK+TL LL + P +G +
Sbjct: 32 IELKNVSVRRNGKK---ILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDV 88
Query: 460 LIDGVDIKELDPMY-LRSQIGSVS---QEPTLFSGTIYENILYGVNDSSSVTKSDIIHAA 515
+ G + + ++ LR +IG VS E T+ + +L G S + + D+ A
Sbjct: 89 TLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDL-TAE 147
Query: 516 KEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAE 575
A A + G + LS G+++R+ IARAL+K ++L+LDE LD
Sbjct: 148 DLAAAQWLLELL--GAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLI 205
Query: 576 N-EYLVQSAIEKLI--EGKTVLTIAHRLSTIRKS-NQICVLDKGKIV 618
E L+ E +L + H I +L +G++V
Sbjct: 206 AREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVV 252
>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter
ATP-binding subunit. This model describes daunorubicin
resistance ABC transporter, ATP binding subunit in
bacteria and archaea. This model is restricted in its
scope to preferentially recognize the ATP binding
subunit associated with effux of the drug, daunorubicin.
This transport system belong to the larger ATP-Binding
Cassette (ABC) transporter superfamily. The
characteristic feature of these transporter is the
obligatory coupling of ATP hydrolysis to substrate
translocation. The minimal configuration of bacterial
ABC transport system: an ATPase or ATP binding subunit;
An integral membrane protein; a hydrophilic polypetpide,
which likely functions as substrate binding protein. In
eukaryotes proteins of similar function include p-gyco
proteins, multidrug resistance protein etc [Transport
and binding proteins, Other].
Length = 302
Score = 95.1 bits (237), Expect = 2e-21
Identities = 57/217 (26%), Positives = 99/217 (45%), Gaps = 22/217 (10%)
Query: 414 DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMY 473
D ++ ++ K++ G + +G +G+GK+T +L L P +G + G D+ +P
Sbjct: 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRK 63
Query: 474 LRSQIGSVSQEPTLFSG-TIYENI-----LYGVNDSSSVTKSDIIHAAKEANAYGFVIDF 527
+R IG V Q ++ T EN+ LYG+ + + + +
Sbjct: 64 VRRSIGIVPQYASVDEDLTGRENLEMMGRLYGL--PKDEAEERAEELLE-------LFEL 114
Query: 528 KNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKL 587
D VG SGG ++R+ IA +LI + +L LDE T+ LD + I L
Sbjct: 115 GEAADRPVGT----YSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRAL 170
Query: 588 IE-GKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGS 622
E G T+L H + K ++I ++D G+I+ G+
Sbjct: 171 KEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGT 207
>gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 93.8 bits (233), Expect = 2e-21
Identities = 68/223 (30%), Positives = 113/223 (50%), Gaps = 13/223 (5%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKST-LAMLLLRLYDPQN----GKILIDGVDI--KELD 470
L +++L I +T++IG SG GKST + L L + N G++ +G +I ++D
Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87
Query: 471 PMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEA-NAYGFVIDFKN 529
+ LR IG V Q+ F +I++N+ YG + K + +++ + K+
Sbjct: 88 LVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKD 147
Query: 530 GFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE 589
T + + LSGGQ+QR+ IARAL +LL+DE TSALD + ++ I KL E
Sbjct: 148 RLHT----QALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE 203
Query: 590 GKTVLTIAHRL-STIRKSNQICVLDKGKIVEIGSYAHLIKNPN 631
T++ + H + R S+Q G++VE + NP+
Sbjct: 204 KYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMFSNPD 246
>gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed.
Length = 402
Score = 96.4 bits (240), Expect = 2e-21
Identities = 59/219 (26%), Positives = 109/219 (49%), Gaps = 17/219 (7%)
Query: 411 SRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELD 470
D +L+ + L ++ GS+ ++G +G+GK+TL + P G +L+ G D++ L
Sbjct: 12 EFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALS 71
Query: 471 PMYLRSQIGSVSQEPTL-FSGTIYENILYGVNDSSS----VTKSDIIHAAKEANAYGFVI 525
++ SV Q+ +L F + + + G S T++D A + A V
Sbjct: 72 ARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDR-AAVERAMERTGVA 130
Query: 526 DFKNGFDTIVGERGIM-LSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAI 584
F +R + LSGG++QR+ +ARAL + + +LLLDE T++LD ++ +
Sbjct: 131 QF--------ADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELV 182
Query: 585 EKLIE-GKTVLTIAHRLS-TIRKSNQICVLDKGKIVEIG 621
+L++ GKT + H L R +++ +L G++ G
Sbjct: 183 RRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAG 221
>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding
protein. This model represents the ATP-binding cassette
(ABC) protein of the three subunit molybdate ABC
transporter. The three proteins of this complex are
homologous to proteins of the sulfate ABC transporter.
Molybdenum may be used in nitrogenases of
nitrogen-fixing bacteria and in molybdopterin cofactors.
In some cases, molybdate may be transported by a sulfate
transporter rather than by a specific molybdate
transporter [Transport and binding proteins, Anions].
Length = 354
Score = 95.6 bits (238), Expect = 3e-21
Identities = 65/220 (29%), Positives = 113/220 (51%), Gaps = 18/220 (8%)
Query: 420 DLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDI----KELDPMYLR 475
D + +T++ G SGSGK+TL L+ L P G+I+++G + K + +
Sbjct: 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEK 74
Query: 476 SQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTI 534
+IG V QE LF ++ N+ YG+ + I + VI+ G +
Sbjct: 75 RRIGYVFQEARLFPHLSVRGNLRYGMKRARP--SERRISFER-------VIELL-GIGHL 124
Query: 535 VGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKT 592
+G LSGG+KQR+AI RAL+ ++LL+DE +ALD +Y + +E+L G
Sbjct: 125 LGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIP 184
Query: 593 VLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHLIKNPN 631
+L ++H L + R ++++ VL+ G++ G A + +P+
Sbjct: 185 ILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPD 224
>gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 93.5 bits (232), Expect = 3e-21
Identities = 79/249 (31%), Positives = 122/249 (48%), Gaps = 29/249 (11%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
I ++ F Y + + + +S+ I +T++IG SG GKST L R+ + + G +
Sbjct: 8 IKVKDLSFYYNT---SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELE-GPV 63
Query: 460 LIDG-VDI-------KELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSD- 510
++G VD ++ LR QIG V Q P F +IYEN+ YGV S+ + ++D
Sbjct: 64 KVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADL 123
Query: 511 --IIHAA-KEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDE 567
I+ +A K A + V D N + + LSGGQ+QR+ IARAL K K+LL+DE
Sbjct: 124 DEIVESALKGAALWQEVKDKLN-------KSALGLSGGQQQRLCIARALAIKPKVLLMDE 176
Query: 568 ATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVL---DK---GKIVEIG 621
SALD V+ I L T+ + H + + + D+ G++VE G
Sbjct: 177 PCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFG 236
Query: 622 SYAHLIKNP 630
+ NP
Sbjct: 237 VTTQIFSNP 245
>gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 92.8 bits (230), Expect = 5e-21
Identities = 74/250 (29%), Positives = 127/250 (50%), Gaps = 29/250 (11%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQN--- 456
I NN+ F Y ++ IL +S++I +T++IG SG GKST L R+ + ++
Sbjct: 8 IKVNNLSFYYDTQK---ILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVR 64
Query: 457 --GKILIDGVDIKE--LDPMYLRSQIGSVSQEPTLFSGTIYENILYGVND---SSSVTKS 509
G++ +I E ++ LR Q+ V +P LF ++Y+N+ YGV +
Sbjct: 65 VEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEID 124
Query: 510 DIIHAA-KEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEA 568
DI+ +A K+A+ + + K+ + + + LSGGQ+QR+ IARAL K K+LL+DE
Sbjct: 125 DIVESALKDADLWD---EIKHK----IHKSALDLSGGQQQRLCIARALAVKPKVLLMDEP 177
Query: 569 TSALDAENEYLVQSAIE--KLIEGKTVLTIAHRLSTIRKSNQICVLDKG------KIVEI 620
LD V+S I+ +L T++ ++H L + + + KG ++VE
Sbjct: 178 CFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEF 237
Query: 621 GSYAHLIKNP 630
G + +P
Sbjct: 238 GLTKKIFNSP 247
>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit;
Provisional.
Length = 353
Score = 94.4 bits (235), Expect = 6e-21
Identities = 72/253 (28%), Positives = 125/253 (49%), Gaps = 41/253 (16%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
I+ NI+ S+ +LND+SL I SG M +++G SGSGK+TL ++ L +G I
Sbjct: 3 IEIANIKKSFGRTQ---VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHI 59
Query: 460 LIDGVDIKELDPMYLRS-QIGSVSQEPTLFSG-TIYENILYGVN-------DSSSVTKS- 509
G D+ ++ R ++G V Q LF T+++NI +G+ +++ K+
Sbjct: 60 RFHGTDVSR---LHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAK 116
Query: 510 -----DIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILL 564
+++ A A+ Y LSGGQKQR+A+ARAL + +ILL
Sbjct: 117 VTQLLEMVQLAHLADRYP-----------------AQLSGGQKQRVALARALAVEPQILL 159
Query: 565 LDEATSALDAENEYLVQSAIEKLIEG---KTVLTIAHRLSTIRKSNQICVLDKGKIVEIG 621
LDE ALDA+ ++ + +L E +V + + ++++ V+ +G I + G
Sbjct: 160 LDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAG 219
Query: 622 SYAHLIKNPNSMF 634
+ + + P + F
Sbjct: 220 TPDQVWREPATRF 232
>gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding
protein. DrrA is the ATP-binding protein component of a
bacterial exporter complex that confers resistance to
the antibiotics daunorubicin and doxorubicin. In
addition to DrrA, the complex includes an integral
membrane protein called DrrB. DrrA belongs to the ABC
family of transporters and shares sequence and
functional similarities with a protein found in cancer
cells called P-glycoprotein. ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region in
addition to the Walker A motif/P-loop and Walker B motif
commonly found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 220
Score = 91.3 bits (227), Expect = 6e-21
Identities = 60/218 (27%), Positives = 111/218 (50%), Gaps = 23/218 (10%)
Query: 414 DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMY 473
D + +S +++ G + ++G +G+GK+T +L L P +G+ + G D+ +P
Sbjct: 12 DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVR-EPRE 70
Query: 474 LRSQIGSVSQEPTLFSG-TIYENI-----LYGVNDSSSVTKSDIIHAAKEANAYGFVIDF 527
+R +IG V Q+ ++ T +EN+ LYGV + + I E + +++
Sbjct: 71 VRRRIGIVFQDLSVDDELTGWENLYIHARLYGV--PGAERRERI----DELLDFVGLLEA 124
Query: 528 KNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKL 587
D +V SGG ++R+ IAR+L+ + ++L LDE T LD + V IEKL
Sbjct: 125 A---DRLVKT----YSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKL 177
Query: 588 IE--GKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGS 622
E G T+L H + + +++ ++D G+I+ G+
Sbjct: 178 KEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGT 215
>gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 274
Score = 92.4 bits (229), Expect = 9e-21
Identities = 68/234 (29%), Positives = 107/234 (45%), Gaps = 26/234 (11%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD-----PQNGKILIDGVDI--KELD 470
L D+ LKI + + + IG SG GKSTL R+ D G++L +I +++
Sbjct: 36 LVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQIN 95
Query: 471 PMYLRSQIGSVSQEPTLFSGTIYENILYG--VNDSSSVTKSDIIHAAKEANAYGFVIDFK 528
+ LR Q+G V Q P F +IYENI + N + + + A + V D
Sbjct: 96 SVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKD-- 153
Query: 529 NGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI 588
+ E+G LSGGQ+QR+ IARA+ K +LL+DE SALD + V+ +L
Sbjct: 154 -----KLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELK 208
Query: 589 EGKTVLTIAHRLSTIRKSNQICVL----------DKGKIVEIGSYAHLIKNPNS 632
E T++ + H + + +GK+VE + +P +
Sbjct: 209 EQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVEFSPTEQMFGSPQT 262
>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease
protein; Provisional.
Length = 648
Score = 95.9 bits (239), Expect = 1e-20
Identities = 68/225 (30%), Positives = 111/225 (49%), Gaps = 13/225 (5%)
Query: 400 IDFNNIRFSYPSRPDAV-ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGK 458
++ +IR SYPS + V +L +SL I +G M +++G+SGSGKSTL +L L P +G
Sbjct: 5 LELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGT 64
Query: 459 ILIDGVDIKELDPMYL----RSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHA 514
+ G D+ LD L R G + Q L S N + +
Sbjct: 65 YRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQ-----NVEVPAVYAGLERK 119
Query: 515 AKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDA 574
+ A + G + V + LSGGQ+QR++IARAL+ +++L DE T ALD+
Sbjct: 120 QRLLRAQELLQRL--GLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDS 177
Query: 575 ENEYLVQSAIEKLIE-GKTVLTIAHRLSTIRKSNQICVLDKGKIV 618
+ V + + +L + G TV+ + H ++ ++ + G+IV
Sbjct: 178 HSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIV 222
>gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 254
Score = 91.6 bits (227), Expect = 1e-20
Identities = 72/230 (31%), Positives = 110/230 (47%), Gaps = 25/230 (10%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD-----PQNGKILIDGVDI--KELD 470
LN++++KI S+T++IG SG GKST L R+ D G ++ +G +I D
Sbjct: 23 LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82
Query: 471 PMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVID---- 526
+ LR +IG V Q P F +IY+NI YG IH K+ +++
Sbjct: 83 ILELRRKIGMVFQTPNPFLMSIYDNISYGPK----------IHGTKDKKKLDEIVEQSLK 132
Query: 527 ---FKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSA 583
N + + LSGGQ+QR+ IAR L + ++L+DE TSALD + ++
Sbjct: 133 KSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEEL 192
Query: 584 IEKLIEGKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHLIKNPNS 632
I L E T++ + H + R S++ G I E S L NP +
Sbjct: 193 IINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELFFNPKN 242
>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit;
Provisional.
Length = 257
Score = 91.7 bits (228), Expect = 1e-20
Identities = 70/202 (34%), Positives = 93/202 (46%), Gaps = 25/202 (12%)
Query: 403 NNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILID 462
N + Y R +LN L L I +G +V+G SG GKSTL LL L P G++L
Sbjct: 16 NAVSKRYGER---TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAG 72
Query: 463 GVDIKELDPMYLRSQIGSVSQEPTLFS-GTIYENILYGVNDSSSVTKSDIIHAAKEANAY 521
+ E R + Q+ L + +N+ G+ K AA +A A
Sbjct: 73 TAPLAEA-----REDTRLMFQDARLLPWKKVIDNVGLGL-------KGQWRDAALQALA- 119
Query: 522 GFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQ 581
G E LSGGQKQR+A+ARALI + +LLLDE ALDA +Q
Sbjct: 120 ------AVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQ 173
Query: 582 SAIEKLIE--GKTVLTIAHRLS 601
IE L + G TVL + H +S
Sbjct: 174 DLIESLWQQHGFTVLLVTHDVS 195
>gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein;
Provisional.
Length = 271
Score = 91.8 bits (228), Expect = 1e-20
Identities = 65/225 (28%), Positives = 106/225 (47%), Gaps = 19/225 (8%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD-----PQNGKILIDGVDIKELDPM 472
L +++L I +T++IG SG GKST L R+ + GKIL +I D
Sbjct: 40 LKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNI--FDKS 97
Query: 473 Y----LRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVI--D 526
Y LR+ +G V Q+P F +IY+N+ YG + + E + G I +
Sbjct: 98 YSVEELRTNVGMVFQKPNPFPKSIYDNVTYGPK-IHGIKDKKTLDEIVEKSLRGAAIWDE 156
Query: 527 FKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEK 586
K+ LSGGQ+QR+ IAR L + ++L+DE TSALD + V+ +++
Sbjct: 157 LKDRLHD----NAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQE 212
Query: 587 LIEGKTVLTIAHRL-STIRKSNQICVLDKGKIVEIGSYAHLIKNP 630
L + +++ + H + R S++ G + E + NP
Sbjct: 213 LKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKIFSNP 257
>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 283
Score = 92.2 bits (229), Expect = 1e-20
Identities = 65/246 (26%), Positives = 124/246 (50%), Gaps = 28/246 (11%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
+ + ++Y A L +++ I+ G +T+++G +G+GKSTL L + P +G+I
Sbjct: 6 LKVEELNYNYSDGTHA--LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRI 63
Query: 460 LIDG--VDIKELDPMYLRSQIGSVSQEP--TLFSGTIYENILYGVNDSSSVTKSDIIHAA 515
L DG +D M LR +G V Q+P LFS ++Y+++ +G + + + ++
Sbjct: 64 LFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVN-LKLPEDEVRKRV 122
Query: 516 KEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALD-- 573
A + G + + + LS GQK+R+AIA L+ + K+L+LDE T+ LD
Sbjct: 123 DNALK-------RTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPM 175
Query: 574 --AENEYLVQSAIEKLIEGKTVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHLIKNP 630
+E L+ ++L G T++ H + + + + V+ +G+++ G NP
Sbjct: 176 GVSEIMKLLVEMQKEL--GLTIIIATHDIDIVPLYCDNVFVMKEGRVILQG-------NP 226
Query: 631 NSMFNK 636
+F +
Sbjct: 227 KEVFAE 232
>gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional.
Length = 306
Score = 92.2 bits (229), Expect = 2e-20
Identities = 72/241 (29%), Positives = 121/241 (50%), Gaps = 35/241 (14%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
IDF N+ Y D ++++ LS +Q G ++G +G+GK+T +LL L P G I
Sbjct: 8 IDFRNVEKRYG---DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSI 64
Query: 460 LIDGVDIKELDPMYLRSQIGSVSQEPTL---FSGTIYENIL-----YGVNDSSSVTKSDI 511
+ G + + R ++G V Q L F T+ EN+L +G++
Sbjct: 65 SLCGEPVPSRAR-HARQRVGVVPQFDNLDPDF--TVRENLLVFGRYFGLS---------- 111
Query: 512 IHAAKEANAYGFVIDF---KNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEA 568
AA +++F +N D VGE LSGG K+R+ +ARAL+ +L+LDE
Sbjct: 112 --AAAARALVPPLLEFAKLENKADAKVGE----LSGGMKRRLTLARALVNDPDVLVLDEP 165
Query: 569 TSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHL 626
T+ LD + +L+ + L+ GKT+L H + R +++CV+++G+ + G+ L
Sbjct: 166 TTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHAL 225
Query: 627 I 627
I
Sbjct: 226 I 226
>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA
family. Members of this protein family are found mostly
in the Cyanobacteria, but also in the Planctomycetes.
Cyanobacterial examples are involved in heterocyst
formation, by which some fraction of members of the
colony undergo a developmental change and become capable
of nitrogen fixation. The DevBCA proteins are thought
export of either heterocyst-specific glycolipids or an
enzyme essential for formation of the laminated layer
found in heterocysts.
Length = 220
Score = 88.9 bits (221), Expect = 4e-20
Identities = 65/213 (30%), Positives = 113/213 (53%), Gaps = 23/213 (10%)
Query: 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIK---ELDPMY 473
+L D++L+I G + + G SGSGK+TL L+ L Q G + + G ++ E + +
Sbjct: 20 VLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQ 79
Query: 474 LRSQIGSVSQEPTLF-SGTIYENILYGVNDSSSVTKSDIIHAAK---EANAYGFVIDFKN 529
LR IG + Q L T +N+ + +++ + A+ EA G +D+
Sbjct: 80 LRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYP 139
Query: 530 GFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI- 588
LSGGQKQR+AIARAL+ + K++L DE T+ALD+++ V ++KL
Sbjct: 140 H----------NLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAR 189
Query: 589 -EGKTVLTIAH--RLSTIRKSNQICVLDKGKIV 618
+G T+L + H R+ + +++I ++ GK++
Sbjct: 190 EQGCTILIVTHDNRILDV--ADRIVHMEDGKLL 220
>gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 258
Score = 89.8 bits (224), Expect = 5e-20
Identities = 63/240 (26%), Positives = 113/240 (47%), Gaps = 35/240 (14%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRL----YDPQ 455
++ N+ R +L+D+SL ++ G + +++G +G+GKST LLR P
Sbjct: 3 LEARNLSVRLGGRT---LLDDVSLTLRPGEVVAILGPNGAGKST----LLRALSGELSPD 55
Query: 456 NGKILIDGVDIKELDPMYLRSQIGSVSQEPTL-FSGTIYENILYGVNDSSSVTKSD--II 512
+G++ ++G + + P L + + Q +L F T+ E + G D ++
Sbjct: 56 SGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALV 115
Query: 513 HAAKEANAYGFVIDFKNGFDTIVGERGIM-LSGGQKQRIAIARALI------KKSKILLL 565
AA + R LSGG++QR+ +AR L + LLL
Sbjct: 116 AAALAQVD---LAHLAG--------RDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLL 164
Query: 566 DEATSALD-AENEYLVQSAIEKLIE-GKTVLTIAHRLS-TIRKSNQICVLDKGKIVEIGS 622
DE TSALD A ++++ A + E G V+ + H L+ R +++I +L +G++V G+
Sbjct: 165 DEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGT 224
>gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 290
Score = 90.1 bits (224), Expect = 6e-20
Identities = 76/249 (30%), Positives = 120/249 (48%), Gaps = 24/249 (9%)
Query: 399 EIDFNNIRFSY-PSRPDAVI-LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQN 456
+I F + Y P L D+++ I SGS ++IG +GSGKSTL L L P +
Sbjct: 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTS 61
Query: 457 GKILI------DGVDIKELDPMYLRSQIGSVSQ--EPTLFSGTIYENILYGVNDSSSVTK 508
G + I G K+L P LR ++G V Q E LF T+ ++I +G + V++
Sbjct: 62 GTVTIGERVITAGKKNKKLKP--LRKKVGIVFQFPEHQLFEETVEKDICFGPMN-FGVSE 118
Query: 509 SDIIHAAKEANAYGFVIDFKNGFDTIVGERG-IMLSGGQKQRIAIARALIKKSKILLLDE 567
D A+E V G + R LSGGQ +R+AIA L + ++L+LDE
Sbjct: 119 EDAKQKARE--MIELV-----GLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDE 171
Query: 568 ATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYA 624
T+ LD + + KL + G T + + H + R ++QI V+ KG + G+
Sbjct: 172 PTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPR 231
Query: 625 HLIKNPNSM 633
+ +P+ +
Sbjct: 232 EIFADPDEL 240
>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter,
ATP-binding protein. This small clade of ABC-type
transporter ATP-binding protein components is found as a
three gene cassette along with a periplasmic
substrate-binding protein (TIGR03868) and a permease
(TIGR03869). The organisms containing this cassette are
all Actinobacteria and all contain numerous genes
requiring the coenzyme F420. This model was defined
based on five such organisms, four of which are lacking
all F420 biosynthetic capability save the final
side-chain polyglutamate attachment step (via the gene
cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and
marine actinobacterium PHSC20C1 this cassette is in an
apparent operon with the cofE gene and, in PHSC20C1,
also with a F420-dependent glucose-6-phosphate
dehydrogenase (TIGR03554). Based on these observations
we propose that this ATP-binding protein is a component
of an F420-0 (that is, F420 lacking only the
polyglutamate tail) transporter.
Length = 256
Score = 89.1 bits (221), Expect = 9e-20
Identities = 61/214 (28%), Positives = 103/214 (48%), Gaps = 7/214 (3%)
Query: 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRS 476
I++ + + GS+T ++G +GSGKSTL LL P G + + GVD+ L
Sbjct: 16 IVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARAR 75
Query: 477 QIGSVSQE-PTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIV 535
++ V Q+ T T+ + + G S+ D H A + + + D +
Sbjct: 76 RVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDM 135
Query: 536 GERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVL 594
LSGG++QR+ +ARAL ++ K+LLLDE T+ LD + + + +L G TV+
Sbjct: 136 S----TLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVV 191
Query: 595 TIAHRLS-TIRKSNQICVLDKGKIVEIGSYAHLI 627
H L+ + + VLD G++V G ++
Sbjct: 192 AALHDLNLAASYCDHVVVLDGGRVVAAGPPREVL 225
>gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system,
permease and ATPase components [General function
prediction only].
Length = 604
Score = 93.1 bits (232), Expect = 9e-20
Identities = 59/256 (23%), Positives = 115/256 (44%), Gaps = 30/256 (11%)
Query: 378 MEREPLISTSGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSS 437
M+ E T F + I N+ P +L++L+ +++ G + G S
Sbjct: 371 MDTEKPARTGRRIDFDDNADHGITLENLSLRTPDG--QTLLSELNFEVRPGERLLITGES 428
Query: 438 GSGKSTLAMLLLRLYDPQNGKILI-DGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENI 496
G+GK++L L L+ +G+I + + ++L Q P L GT+ E +
Sbjct: 429 GAGKTSLLRALAGLWPWGSGRISMPADSAL-----LFL-------PQRPYLPQGTLREAL 476
Query: 497 LYGVNDSSSVTKSDIIHAAKEAN--AYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIAR 554
Y N + + ++++ + +D ++ +D + LSGG++QR+A AR
Sbjct: 477 CYP-NAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRV-------LSGGEQQRLAFAR 528
Query: 555 ALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDK 614
L+ K K + LDEATSALD E E + +++ + TV+++ HR + ++
Sbjct: 529 LLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHRPTLWNFHSRQL---- 584
Query: 615 GKIVEIGSYAHLIKNP 630
++++ +L
Sbjct: 585 -ELLDDAGGQNLKPPA 599
>gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 276
Score = 89.4 bits (221), Expect = 9e-20
Identities = 64/221 (28%), Positives = 110/221 (49%), Gaps = 10/221 (4%)
Query: 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDP-----QNGKILIDGVDI-KELD 470
+L+ +S+ + ++TS++G +GSGK+T L R+ D +G +L+ G I D
Sbjct: 36 VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRD 95
Query: 471 PMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNG 530
+ R ++G + Q P F +I +N+L GV V + + A+ A + +
Sbjct: 96 VLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQ---ARLTEVGLWDA 152
Query: 531 FDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEG 590
+ + LSGGQ+Q + +AR L ++LLLDE TSALD ++ I L +
Sbjct: 153 VKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADR 212
Query: 591 KTVLTIAHRLS-TIRKSNQICVLDKGKIVEIGSYAHLIKNP 630
TV+ + H L+ R S++ + G++VE G L +P
Sbjct: 213 LTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSSP 253
>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 89.0 bits (221), Expect = 1e-19
Identities = 65/200 (32%), Positives = 100/200 (50%), Gaps = 21/200 (10%)
Query: 403 NNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILID 462
+++ Y +P L D++L ++SG + V+G SG GK+TL L+ Q+G I +D
Sbjct: 5 SHLYADYGGKP---ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLD 61
Query: 463 GVDIKELDPMYLRSQIGSVSQEPTLFS-GTIYENILYGVNDSSSVTKSDIIHAAKEANAY 521
G ++ P R G V Q L + +N+ +G+ + V K + A +
Sbjct: 62 GKPVE--GPGAER---GVVFQNEGLLPWRNVQDNVAFGL-QLAGVEKMQRLEIAHQMLK- 114
Query: 522 GFVIDFKNGFDTIVGERGI-MLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLV 580
+ + G +R I LSGGQ+QR+ IARAL ++LLLDE ALDA +
Sbjct: 115 --KVGLE-GA----EKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQM 167
Query: 581 QSAIEKLIE--GKTVLTIAH 598
Q+ + KL + GK VL I H
Sbjct: 168 QTLLLKLWQETGKQVLLITH 187
>gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an
uncharacterized transporter. This subgroup is related
to the subfamily A transporters involved in drug
resistance, nodulation, lipid transport, and bacteriocin
and lantibiotic immunity. In eubacteria and archaea, the
typical organization consists of one ABC and one or two
integral membranes. ABC transporters are a large family
of proteins involved in the transport of a wide variety
of different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region in addition to the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 210
Score = 87.7 bits (218), Expect = 1e-19
Identities = 53/225 (23%), Positives = 112/225 (49%), Gaps = 18/225 (8%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
++ N+ + L+D+S ++ G + ++G +G+GK+T ++L + P +G++
Sbjct: 1 LEVENVTKRFG---RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEV 57
Query: 460 LIDGVDIKELDPMYLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEA 518
L DG + R++IG + +E L+ + + ++Y + + K + A +
Sbjct: 58 LFDGKPLDIAA----RNRIGYLPEERGLYPKMKVIDQLVY-LAQLKGLKKEE---ARRRI 109
Query: 519 NAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEY 578
+ + ++ + V E LS G +Q++ A+I ++L+LDE S LD N
Sbjct: 110 DEWLERLELSEYANKRVEE----LSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVE 165
Query: 579 LVQSAIEKLIE-GKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIG 621
L++ I +L GKTV+ H++ + +++ +L+KG+ V G
Sbjct: 166 LLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210
>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D.
This model describes the ATP binding subunits of nitrate
transport in bacteria and archaea. This protein belongs
to the ATP-binding cassette (ABC) superfamily. It is
thought that the two subunits encoded by ntrC and ntrD
form the binding surface for interaction with ATP. This
model is restricted in identifying ATP binding subunit
associated with the nitrate transport. Nitrate
assimilation is aided by other proteins derived from the
operon which among others include products of ntrA - a
regulatory protein; ntrB - a hydropbobic transmembrane
permease and narB - a reductase [Transport and binding
proteins, Anions, Transport and binding proteins,
Other].
Length = 230
Score = 87.9 bits (218), Expect = 1e-19
Identities = 70/212 (33%), Positives = 102/212 (48%), Gaps = 23/212 (10%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQ 477
L ++L IQ G S+IG SG GKSTL L+ L P +G ++++G I E P +
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRM--- 57
Query: 478 IGSVSQEPTLFSG-TIYENILYGVN----DSSSVTKSDIIHAAKEANAYGFVIDFKNGFD 532
V Q +L T+ ENI V+ D S + I+ ++ D
Sbjct: 58 --VVFQNYSLLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIA------LVGLTEAAD 109
Query: 533 TIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--G 590
G+ LSGG KQR+AIARAL + K+LLLDE ALDA +Q + ++ E
Sbjct: 110 KRPGQ----LSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHR 165
Query: 591 KTVLTIAHRL-STIRKSNQICVLDKGKIVEIG 621
TVL + H + + S+++ +L G IG
Sbjct: 166 VTVLMVTHDVDEALLLSDRVVMLTNGPAANIG 197
>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL.
Members of this family are the PhnL protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated C-P lysase complex. This protein
(PhnL) and the adjacent-encoded PhnK (TIGR02323)
resemble transporter ATP-binding proteins but are
suggested, based on mutatgenesis studies, to be part of
this C-P lyase complex rather than part of a transporter
per se.
Length = 224
Score = 87.8 bits (218), Expect = 1e-19
Identities = 59/196 (30%), Positives = 92/196 (46%), Gaps = 25/196 (12%)
Query: 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILI----DGVDIKELDP- 471
+L ++SL + +G ++ G SG+GKSTL L Y P +G+IL+ VD+ + P
Sbjct: 23 VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPR 82
Query: 472 --MYLRSQ-IGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFK 528
+ +R + IG VSQ + ++ V+ V + + A +
Sbjct: 83 EVLEVRRKTIGYVSQ---------FLRVIPRVSALEVVAEPLLERGVPREAARARARELL 133
Query: 529 NGFDTIVGERGIML-----SGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSA 583
+ + ER L SGG++QR+ IAR I ILLLDE T++LDA N +V
Sbjct: 134 ARLN--IPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVEL 191
Query: 584 I-EKLIEGKTVLTIAH 598
I E G ++ I H
Sbjct: 192 IAEAKARGAALIGIFH 207
>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP)
Family protein. [Transport and binding proteins,
Other].
Length = 617
Score = 92.4 bits (230), Expect = 1e-19
Identities = 61/228 (26%), Positives = 113/228 (49%), Gaps = 27/228 (11%)
Query: 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQN----GKILIDGVDIKELDPM 472
+L ++S + G + +V+GSSG+GK+TL M L P+ G +L++G+ I + M
Sbjct: 40 LLKNVSGVAKPGELLAVMGSSGAGKTTL-MNALAFRSPKGVKGSGSVLLNGMPI-DAKEM 97
Query: 473 YLRSQIGSVSQEPTLFSG--TIYENILYG--VNDSSSVTKSDIIHAAKEANAYGFVID-- 526
S + Q+ LF T+ E++++ + VTK + E V+
Sbjct: 98 RAIS---AYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDE------VLQAL 148
Query: 527 -FKNGFDTIVGERGIM--LSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSA 583
+ +T +G G + LSGG+++R+A A L+ +L DE TS LD+ Y V
Sbjct: 149 GLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQV 208
Query: 584 IEKLIE-GKTVLTIAHRLST--IRKSNQICVLDKGKIVEIGSYAHLIK 628
++ L + GKT++ H+ S+ ++I ++ +G++ +GS +
Sbjct: 209 LKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVP 256
>gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 327
Score = 89.6 bits (223), Expect = 2e-19
Identities = 73/238 (30%), Positives = 108/238 (45%), Gaps = 47/238 (19%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMY---L 474
L+ +S ++ G +V+G SG GKSTLA LL + P G++ G D+ + DP L
Sbjct: 31 LDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLL 90
Query: 475 RSQIGSVSQE------PTLFSGTIYENILYGVNDSSSVTKSDIIHA--AKEANAYGFVID 526
R +I V Q P G I E L S+ + + A AK
Sbjct: 91 RQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAK---------- 140
Query: 527 FKNGFDTIVGERGI-------MLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYL 579
VG R M SGGQ+QRIAIARAL+ +++ DE SALD
Sbjct: 141 --------VGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVS---- 188
Query: 580 VQSAIEKLIE------GKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLIKNP 630
VQ+ + L+ G + + I+H LS + ++++ V+ G+ VE G+ + NP
Sbjct: 189 VQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKEQIFNNP 246
>gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 89.1 bits (221), Expect = 2e-19
Identities = 69/246 (28%), Positives = 117/246 (47%), Gaps = 25/246 (10%)
Query: 400 IDFNNIRFSY-PSRP-DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNG 457
I F N+ + Y P P + L+++S +++ GS +++G +GSGKSTL L P +G
Sbjct: 3 IKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSG 62
Query: 458 KILIDGVDI------KELDPMYLRSQIGSVSQ--EPTLFSGTIYENILYGVNDSSSVTKS 509
I I G I K L LR ++ V Q E LF T+ +++ +G +
Sbjct: 63 TITIAGYHITPETGNKNLKK--LRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDE 120
Query: 510 DIIHAAKEANAYGFVIDF--KNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDE 567
A K G D K+ F+ LSGGQ +R+AIA + + +IL LDE
Sbjct: 121 AKEKALKWLKKVGLSEDLISKSPFE---------LSGGQMRRVAIAGVMAYEPEILCLDE 171
Query: 568 ATSALDAEN-EYLVQSAIEKLIEGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAH 625
+ LD E + ++Q + G TV+ + H + + + ++ + VL+ GK+++ S
Sbjct: 172 PAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKE 231
Query: 626 LIKNPN 631
+ +
Sbjct: 232 IFSDKE 237
>gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase
[Posttranslational modification, protein turnover,
chaperones].
Length = 251
Score = 88.0 bits (219), Expect = 2e-19
Identities = 75/225 (33%), Positives = 109/225 (48%), Gaps = 36/225 (16%)
Query: 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRL--YDPQNGKILIDGVDIKELDPMYL 474
IL ++L ++ G + +++G +GSGKSTLA ++ Y+ G+IL DG DI EL P
Sbjct: 19 ILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSP-DE 77
Query: 475 RSQ--IGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEA--NAYGFVIDFKN- 529
R++ I Q P G VT SD + AA A A G + +F
Sbjct: 78 RARAGIFLAFQYPVEIPG---------------VTNSDFLRAAMNARRGARGILPEFIKE 122
Query: 530 --------GFDTIVGERGIM--LSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYL 579
G D ER + SGG+K+R I + L+ + K+ +LDE S LD + +
Sbjct: 123 LKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKI 182
Query: 580 VQSAIEKLI-EGKTVLTIAH--RLSTIRKSNQICVLDKGKIVEIG 621
V I L EG+ VL I H RL K +++ VL G+IV+ G
Sbjct: 183 VAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSG 227
>gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 87.9 bits (218), Expect = 2e-19
Identities = 65/201 (32%), Positives = 94/201 (46%), Gaps = 23/201 (11%)
Query: 404 NIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDG 463
++ SY +P L D+SL I SG + V+G SG GK+TL L+ P G I ++G
Sbjct: 8 HLSLSYEGKP-RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNG 66
Query: 464 VDIKELDPMYLRSQIGSVSQEPTLFSG-TIYENILYGVNDS--SSVTKSDIIHAAKEANA 520
I+ P R G V Q L + +N+ +G+ + +I A +
Sbjct: 67 RRIE--GPGAER---GVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREI--AHQMLAL 119
Query: 521 YGFVIDFKNGFDTIVGERGIM-LSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYL 579
G G + + I LSGG +QR+ IARAL + ++LLLDE ALDA
Sbjct: 120 VGL-----EGAE----HKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQ 170
Query: 580 VQSAIEKLIE--GKTVLTIAH 598
+Q + L + GK VL I H
Sbjct: 171 MQELLLDLWQETGKQVLLITH 191
>gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of
peroxisomal transporter, subfamily D. Peroxisomal
ATP-binding cassette transporter (Pat) is involved in
the import of very long-chain fatty acids (VLCFA) into
the peroxisome. The peroxisomal membrane forms a
permeability barrier for a wide variety of metabolites
required for and formed during fatty acid
beta-oxidation. To communicate with the cytoplasm and
mitochondria, peroxisomes need dedicated proteins to
transport such hydrophilic molecules across their
membranes. X-linked adrenoleukodystrophy (X-ALD) is
caused by mutations in the ALD gene, which encodes ALDP
(adrenoleukodystrophy protein ), a peroxisomal integral
membrane protein that is a member of the ATP-binding
cassette (ABC) transporter protein family. The disease
is characterized by a striking and unpredictable
variation in phenotypic expression. Phenotypes include
the rapidly progressive childhood cerebral form (CCALD),
the milder adult form, adrenomyeloneuropathy (AMN), and
variants without neurologic involvement (i.e.
asymptomatic).
Length = 166
Score = 85.3 bits (212), Expect = 2e-19
Identities = 61/215 (28%), Positives = 97/215 (45%), Gaps = 53/215 (24%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
I+ N+ + P V+L DLS +I+ G + G SG+GKS+L L L+ +G+I
Sbjct: 1 IELENLSLATPD--GRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRI 58
Query: 460 LIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEAN 519
M + + Q P L GT+ E ++Y +D
Sbjct: 59 G-----------MPEGEDLLFLPQRPYLPLGTLREQLIYPWDD----------------- 90
Query: 520 AYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYL 579
+LSGG++QR+A AR L+ K K + LDEATSALD E+E
Sbjct: 91 ---------------------VLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDR 129
Query: 580 VQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDK 614
+ +++ G TV+++ HR S + +++ LD
Sbjct: 130 LYQLLKE--LGITVISVGHRPSLWKFHDRVLDLDG 162
>gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette
component of monosaccharide transport system. This
family represents the domain I of the carbohydrate
uptake proteins that transport only monosaccharides
(Monos). The Carb_Monos family is involved in the uptake
of monosaccharides, such as pentoses (such as xylose,
arabinose, and ribose) and hexoses (such as xylose,
arabinose, and ribose), that cannot be broken down to
simple sugars by hydrolysis. Pentoses include xylose,
arabinose, and ribose. Important hexoses include
glucose, galactose, and fructose. In members of the
Carb_monos family, the single hydrophobic gene product
forms a homodimer while the ABC protein represents a
fusion of two nucleotide-binding domains. However, it is
assumed that two copies of the ABC domains are present
in the assembled transporter.
Length = 163
Score = 84.4 bits (210), Expect = 5e-19
Identities = 55/222 (24%), Positives = 95/222 (42%), Gaps = 64/222 (28%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
++ I + L+ +SL ++ G + +++G +G+GKSTL +L LY P +G+I
Sbjct: 1 LELRGITKRFGG---VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEI 57
Query: 460 LIDGVDIKELDPMY-LRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEA 518
L+DG ++ P R+ I V Q
Sbjct: 58 LVDGKEVSFASPRDARRAGIAMVYQLS--------------------------------- 84
Query: 519 NAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEY 578
VGER Q + IARAL + +++L+LDE T+AL
Sbjct: 85 ----------------VGER---------QMVEIARALARNARLLILDEPTAALTPAEVE 119
Query: 579 LVQSAIEKLI-EGKTVLTIAHRLSTIRK-SNQICVLDKGKIV 618
+ I +L +G V+ I+HRL + + ++++ VL G++V
Sbjct: 120 RLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVV 161
>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated
ATPase domains [General function prediction only].
Length = 530
Score = 90.0 bits (224), Expect = 7e-19
Identities = 67/254 (26%), Positives = 110/254 (43%), Gaps = 63/254 (24%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
I N+ +Y RP +L ++SL + G ++G +G+GKSTL +L +P +G++
Sbjct: 4 ITLENLSLAYGDRP---LLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEV 60
Query: 460 LIDGVDIKELDPMYLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTK---------- 508
++G +SQEP L T+ + ++ G + +
Sbjct: 61 TRPKG-----------LRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLA 109
Query: 509 SDIIHAAKEANAYGFVIDF------------KNGF---DTIVGERGIMLSGGQKQRIAIA 553
E A +D GF D V LSGG ++R+A+A
Sbjct: 110 DPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSS----LSGGWRRRVALA 165
Query: 554 RALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE------GKTVLTIAH-R--LSTIR 604
RAL+++ +LLLDE T+ LD E +IE L + G TV+ ++H R L +
Sbjct: 166 RALLEEPDLLLLDEPTNHLDLE-------SIEWLEDYLKRYPG-TVIVVSHDRYFLDNV- 216
Query: 605 KSNQICVLDKGKIV 618
+ I LD+GK+
Sbjct: 217 -ATHILELDRGKLT 229
Score = 74.6 bits (184), Expect = 5e-14
Identities = 62/231 (26%), Positives = 104/231 (45%), Gaps = 39/231 (16%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
++F N+ Y ++L DLS +I G +++G +G+GKSTL LL P +G +
Sbjct: 322 LEFENVSKGYDGGR--LLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTV 379
Query: 460 LIDGVDIKELDPMYLRSQIGSVSQE-PTLF-SGTIYENILYGVNDSSSVTKSDIIHAAKE 517
+ G +K IG Q L T+ E + G D E
Sbjct: 380 KV-GETVK----------IGYFDQHRDELDPDKTVLEELSEGFPD------------GDE 416
Query: 518 ANAYGFVIDFKNGFDT-IVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAEN 576
++ F GF + +LSGG+K R+ +A+ L++ +LLLDE T+ LD E+
Sbjct: 417 QEVRAYLGRF--GFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIES 474
Query: 577 EYLVQSAIEKLI---EGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSY 623
A+E+ + EG TVL ++H + + + +I +++ G Y
Sbjct: 475 ----LEALEEALLDFEG-TVLLVSHDRYFLDRVATRIWLVEDKVEEFEGGY 520
>gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 288
Score = 86.7 bits (214), Expect = 9e-19
Identities = 71/237 (29%), Positives = 125/237 (52%), Gaps = 25/237 (10%)
Query: 400 IDFNNIRFSY-PSRPDAV-ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNG 457
I F + ++Y P+ P A L D+ L+++ GS T++IG +GSGKSTL L L P G
Sbjct: 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEG 61
Query: 458 KILIDGVDI------KELDPMYLRSQIGSVSQEP--TLFSGTIYENILYGVNDSSSVTKS 509
K+ + + + KE+ P +R ++G V Q P LF T+ +++ +G + +
Sbjct: 62 KVTVGDIVVSSTSKQKEIKP--VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEK 119
Query: 510 DIIHAAKEANAYGFVIDF--KNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDE 567
AA++ G +F K+ F+ LSGGQ +R+AIA L + ++L+LDE
Sbjct: 120 AEKIAAEKLEMVGLADEFWEKSPFE---------LSGGQMRRVAIAGILAMEPEVLVLDE 170
Query: 568 ATSALDAENEYLVQSAIEKLIE-GKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGS 622
T+ LD + + E + + G+TV+ + H + + ++ + +L+KG I+ G+
Sbjct: 171 PTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGT 227
>gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of
the bacitracin-resistance transporter. The BcrA
subfamily represents ABC transporters involved in
peptide antibiotic resistance. Bacitracin is a
dodecapeptide antibiotic produced by B. licheniformis
and B. subtilis. The synthesis of bacitracin is
non-ribosomally catalyzed by a multi-enzyme complex
BcrABC. Bacitracin has potent antibiotic activity
against gram-positive bacteria. The inhibition of
peptidoglycan biosynthesis is the best characterized
bacterial effect of bacitracin. The bacitracin
resistance of B. licheniformis is mediated by the ABC
transporter Bcr which is composed of two identical BcrA
ATP-binding subunits and one each of the integral
membrane proteins, BcrB and BcrC. B. subtilis cells
carrying bcr genes on high-copy number plasmids develop
collateral detergent sensitivity, a similar phenomenon
in human cells with overexpressed multi-drug resistance
P-glycoprotein.
Length = 208
Score = 83.8 bits (208), Expect = 2e-18
Identities = 59/210 (28%), Positives = 102/210 (48%), Gaps = 27/210 (12%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQ 477
L+D+SL ++ G + +G +G+GK+T ++L L P +G+I DG ++ +
Sbjct: 16 LDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEAL--RR 73
Query: 478 IGSVSQEPTLFSG-TIYENI-----LYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGF 531
IG++ + P + T EN+ L G+ E G
Sbjct: 74 IGALIEAPGFYPNLTARENLRLLARLLGIRKK----------RIDEVLDVV-------GL 116
Query: 532 DTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EG 590
++ S G KQR+ IA AL+ +L+LDE T+ LD + ++ I L +G
Sbjct: 117 KDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQG 176
Query: 591 KTVLTIAHRLSTIRK-SNQICVLDKGKIVE 619
TVL +H LS I+K +++I +++KGK++E
Sbjct: 177 ITVLISSHLLSEIQKVADRIGIINKGKLIE 206
>gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional.
Length = 222
Score = 83.8 bits (207), Expect = 3e-18
Identities = 67/211 (31%), Positives = 101/211 (47%), Gaps = 22/211 (10%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKEL---DPMYL 474
L ++ ++ G M + G SG+GKSTL L+ + P GKI G DI L + +L
Sbjct: 18 LQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFL 77
Query: 475 RSQIGSVSQE-PTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDT 533
R QIG + Q+ L T+Y+N+ + + + + DI A ++D F
Sbjct: 78 RRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGA-SGDDIRRRVSAALDKVGLLDKAKNFP- 135
Query: 534 IVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE---- 589
I LSGG++QR+ IARA++ K +LL DE T LD + I +L E
Sbjct: 136 ------IQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDA----LSEGILRLFEEFNR 185
Query: 590 -GKTVLTIAHRLSTI-RKSNQICVLDKGKIV 618
G TVL H + I R+S ++ L G +
Sbjct: 186 VGVTVLMATHDIGLISRRSYRMLTLSDGHLH 216
>gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 320
Score = 85.7 bits (212), Expect = 4e-18
Identities = 72/229 (31%), Positives = 115/229 (50%), Gaps = 31/229 (13%)
Query: 416 VILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMY-- 473
V LN++S + + +IG+SGSGKSTL L + G I + + I + +
Sbjct: 40 VALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHEL 99
Query: 474 --------------LRSQIGSVSQEP--TLFSGTIYENILYG-VNDSSSVTKSDIIHAAK 516
LR ++ V Q P LF TI ++I++G V V KS+ AK
Sbjct: 100 ITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVA--LGVKKSE----AK 153
Query: 517 EANAYGFVIDFKNGFDTIVGERG-IMLSGGQKQRIAIARALIKKSKILLLDEATSALDAE 575
+ + K G D ER LSGGQK+R+AIA L + +IL+ DE T+ LD +
Sbjct: 154 KLAKFYLN---KMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPK 210
Query: 576 NEY-LVQSAIEKLIEGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGS 622
E+ ++Q ++ KTV I H + + + ++++ V+DKGKI++ G+
Sbjct: 211 GEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGT 259
>gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 267
Score = 84.5 bits (209), Expect = 4e-18
Identities = 65/223 (29%), Positives = 114/223 (51%), Gaps = 26/223 (11%)
Query: 421 LSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGS 480
+S ++ G ++IG +GSGKSTLA +L + +P +G+ILI+ + D + +I
Sbjct: 32 VSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRM 91
Query: 481 VSQEPT------LFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTI 534
+ Q+P L G I + L D + I + G + D N +
Sbjct: 92 IFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIF--ETLRMVGLLPDHANYYPH- 148
Query: 535 VGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI------ 588
ML+ GQKQR+A+ARALI + KI++ DEA ++LD ++S + L+
Sbjct: 149 ------MLAPGQKQRVALARALILRPKIIIADEALASLDMS----MRSQLINLMLELQEK 198
Query: 589 EGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLIKNP 630
+G + + + + I+ S+Q+ V+ +G++VE GS A ++ +P
Sbjct: 199 QGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVLASP 241
>gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 83.9 bits (207), Expect = 6e-18
Identities = 66/221 (29%), Positives = 113/221 (51%), Gaps = 26/221 (11%)
Query: 414 DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDG--VDIKELDP 471
D +L L+L +T ++G++G GKSTL M L L PQ G +L G +D +
Sbjct: 13 DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGL 72
Query: 472 MYLRSQIGSVSQEP--TLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKN 529
+ LR Q+ +V Q+P +F I +I + + + V +++I EA
Sbjct: 73 LALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLG-VPEAEITRRVDEAL---------- 121
Query: 530 GFDTIVGERGIM------LSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSA 583
T+V + LS GQK+R+AIA AL+ +++ LLLDE T+ LD + +
Sbjct: 122 ---TLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAI 178
Query: 584 IEKLI-EGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGS 622
I +++ +G V+ +H + I + S+ + VL +G+I+ G+
Sbjct: 179 IRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGA 219
>gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding
protein; Provisional.
Length = 369
Score = 85.9 bits (213), Expect = 6e-18
Identities = 64/228 (28%), Positives = 112/228 (49%), Gaps = 20/228 (8%)
Query: 414 DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMY 473
D VI D++L I G +G SG GKSTL ++ L D +G + I + ++ P
Sbjct: 15 DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPA- 73
Query: 474 LRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDI---IHAAKEANAYGFVIDFKN 529
+G V Q L+ ++ EN+ +G+ + K +I ++ E ++D
Sbjct: 74 -ERGVGMVFQSYALYPHLSVAENMSFGLK-LAGAKKEEINQRVNQVAEVLQLAHLLD--- 128
Query: 530 GFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE 589
+ LSGGQ+QR+AI R L+ + + LLDE S LDA ++ I +L +
Sbjct: 129 -------RKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHK 181
Query: 590 --GKTVLTIAH-RLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMF 634
G+T++ + H ++ + +++I VLD G++ ++G L P + F
Sbjct: 182 RLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPANRF 229
>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding
subunit; Provisional.
Length = 265
Score = 84.1 bits (208), Expect = 6e-18
Identities = 68/244 (27%), Positives = 115/244 (47%), Gaps = 35/244 (14%)
Query: 403 NNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILID 462
N+ F P R +L+ LSL +G +T +IG +GSGKSTL +L R P G+IL+D
Sbjct: 15 RNVSFRVPGR---TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLD 71
Query: 463 GVDIKELDPMYLRSQIGSVSQE-PTLFSGTIYENIL------------YGVNDSSSVTKS 509
++ ++ + Q+ P T+ E + +G D V
Sbjct: 72 AQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKV--- 128
Query: 510 DIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEAT 569
+EA + ++ K +V LSGG++QR IA + + S+ LLLDE T
Sbjct: 129 ------EEAIS---LVGLKPLAHRLVDS----LSGGERQRAWIAMLVAQDSRCLLLDEPT 175
Query: 570 SALDAENEYLVQSAIEKLIE--GKTVLTIAHRLS-TIRKSNQICVLDKGKIVEIGSYAHL 626
SALD ++ V + + +L + G TV+ + H ++ R + + L G+++ G+ A L
Sbjct: 176 SALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAEL 235
Query: 627 IKNP 630
++
Sbjct: 236 MRGE 239
>gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in
lysophospholipase L1 biosynthesis, ATPase component
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 228
Score = 82.4 bits (204), Expect = 1e-17
Identities = 55/176 (31%), Positives = 82/176 (46%), Gaps = 37/176 (21%)
Query: 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDP---MY 473
IL + L ++ G +++G SGSGKSTL +L L DP +G++ + G + +LD
Sbjct: 25 ILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAA 84
Query: 474 LRSQ-IGSVSQE----PTLFSGTIYENI-----LYGVNDSSSVTKSDIIHAAKEANAYGF 523
LR++ +G V Q P L T EN+ L G + + S A A G
Sbjct: 85 LRARHVGFVFQSFHLIPNL---TALENVALPLELRGESSADSRAG-----AKALLEAVG- 135
Query: 524 VIDFKNGFDTIVGER----GIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAE 575
+G+R LSGG++QR+A+ARA + +L DE T LD
Sbjct: 136 -----------LGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRA 180
>gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 252
Score = 82.7 bits (205), Expect = 1e-17
Identities = 71/238 (29%), Positives = 121/238 (50%), Gaps = 17/238 (7%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
I N+ SY ++ +L+D+SL I G +TS+IG +G+GKSTL ++ RL +G+I
Sbjct: 2 ITIENVSKSYGTKV---VLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEI 58
Query: 460 LIDGVDIKELDPMYLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSS--VTKSDIIHAAK 516
IDG+++ L ++ + QE + S T+ + + +G S +TK D
Sbjct: 59 TIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRI-IN 117
Query: 517 EANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAEN 576
EA Y + D + + LSGGQ+QR IA L + + +LLDE + LD ++
Sbjct: 118 EAIEYLHLEDLSDRYLD-------ELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKH 170
Query: 577 EYLVQSAIEKLIE--GKTVLTIAHRLS-TIRKSNQICVLDKGKIVEIGSYAHLIKNPN 631
+ + +L + GKT++ + H ++ S+ I L GK+V+ GS +I+
Sbjct: 171 SVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQPEI 228
>gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein;
Provisional.
Length = 352
Score = 84.2 bits (209), Expect = 2e-17
Identities = 69/230 (30%), Positives = 111/230 (48%), Gaps = 52/230 (22%)
Query: 418 LNDLSLKIQ----SGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDG---VDIKE-- 468
L DL L + + +T++ G SG+GK++L + L PQ G+I+++G D ++
Sbjct: 10 LGDLCLTVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGI 69
Query: 469 -LDPMYLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVID 526
L P R IG V Q+ LF + N+ YG+ AK A
Sbjct: 70 CLPPEKRR--IGYVFQDARLFPHYKVRGNLRYGM--------------AKSMVAQ----- 108
Query: 527 FKNGFDTIVGERGI---------MLSGGQKQRIAIARALIKKSKILLLDEATSALDAENE 577
FD IV GI LSGG+KQR+AI RAL+ ++LL+DE ++LD +
Sbjct: 109 ----FDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRK 164
Query: 578 YLVQSAIEKLIEGKTV----LTIAHRLSTI-RKSNQICVLDKGKIVEIGS 622
+ +E+L + + L ++H L I R ++++ VL++GK+ G
Sbjct: 165 RELLPYLERL--AREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGP 212
>gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane
component/ATP-binding component; Provisional.
Length = 547
Score = 85.4 bits (212), Expect = 2e-17
Identities = 65/235 (27%), Positives = 105/235 (44%), Gaps = 39/235 (16%)
Query: 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGK 458
++ N+ F+Y +V ++L I+ G + +IG +GSGKSTLAMLL LY PQ+G+
Sbjct: 322 TLELRNVTFAYQDNGFSV--GPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGE 379
Query: 459 ILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTI-----------YENILYGVNDSSSVT 507
IL+DG + P R +V + LF + E L + + +
Sbjct: 380 ILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPEGKPANPALVEKWLERLKMAHKLE 439
Query: 508 KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDE 567
D G + + K LS GQK+R+A+ AL ++ ILLLDE
Sbjct: 440 LED-----------GRISNLK-------------LSKGQKKRLALLLALAEERDILLLDE 475
Query: 568 ATSALDAE-NEYLVQSAIEKLIE-GKTVLTIAHRLSTIRKSNQICVLDKGKIVEI 620
+ D Q + L E GKT+ I+H ++++ + G++ E+
Sbjct: 476 WAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSEL 530
>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein;
Provisional.
Length = 510
Score = 85.2 bits (211), Expect = 2e-17
Identities = 60/212 (28%), Positives = 111/212 (52%), Gaps = 15/212 (7%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDP-MYLRS 476
L ++L + G + +++G +G+GKSTL +L +++P G I I+ ++ +LD + +
Sbjct: 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQL 80
Query: 477 QIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAK---EANAYGFVIDFKNGFD 532
IG + QE ++ T+ EN+ G + + V +II + A + K D
Sbjct: 81 GIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLD 140
Query: 533 TIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSAL-DAENEYLVQSAIEKLIEGK 591
V LS KQ + IA+ L+ +K++++DE TS+L + E +YL + EG
Sbjct: 141 EKVAN----LSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGT 196
Query: 592 TVLTIAHRLSTIRKSNQICVLDKGKIVEIGSY 623
++ I+H+L+ IR +IC D+ +++ GS
Sbjct: 197 AIVYISHKLAEIR---RIC--DRYTVMKDGSS 223
Score = 40.5 bits (95), Expect = 0.002
Identities = 47/242 (19%), Positives = 103/242 (42%), Gaps = 36/242 (14%)
Query: 419 NDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPM-YLRSQ 477
D+S + G + G GSG++ L L + G+I ++G DI P+ ++
Sbjct: 280 RDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKG 339
Query: 478 IGSVSQ---EPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDT 533
+ +++ + F +I +N+ ++++S + A G + + T
Sbjct: 340 MAYITESRRDNGFFPNFSIAQNM--------AISRS--LKDGGYKGAMG-LFHEVDEQRT 388
Query: 534 IVGERGIM-------------LSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLV 580
+R ++ LSGG +Q++ I++ L ++++ DE T +D + +
Sbjct: 389 AENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEI 448
Query: 581 QSAIEKLI-EGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMF-NKLM 638
+ +L +GK +L ++ L I I V D+ + G ++ N + M ++M
Sbjct: 449 YKVMRQLADDGKVILMVSSELPEI-----ITVCDRIAVFCEGRLTQILTNRDDMSEEEIM 503
Query: 639 KY 640
+
Sbjct: 504 AW 505
>gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and
permease components [Secondary metabolites biosynthesis,
transport, and catabolism / Inorganic ion transport and
metabolism].
Length = 546
Score = 85.2 bits (211), Expect = 2e-17
Identities = 111/531 (20%), Positives = 197/531 (37%), Gaps = 96/531 (18%)
Query: 126 LLMLVFVVGACCNFGRVYLMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELINRIS 185
LL+L V G L Q KLR I+ ++ + L+ ++
Sbjct: 57 LLLLFMVSSLISQLGLTTL----GQHFIYKLRSEFIKKILDTPLERIERLGSARLLAGLT 112
Query: 186 ADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLALIS--LIIVPPVAGLAIVYGK 243
+D +NIS + + + ++ LA +S + ++ V + ++G
Sbjct: 113 SDV--------RNISFAFSRLPELVQAIILTLGSAAYLAYLSPKMFLLTVVWIVVTIWGG 164
Query: 244 FVR--------KITRNVQDKLANAVQV-----AEERISNIRTVKSFSQEKLEMSHF---N 287
FV R +DKL N Q E ++ R + + + +
Sbjct: 165 FVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPDAQEYRHH 224
Query: 288 AKMDDLFELAKKEALAKGVFFGFTGL-----------SGNA---IILSVLYYGGVMVSYE 333
+ F L + + G GL S N I+L +L+ ++S
Sbjct: 225 IIRANTFHLLAVN-WSNIMLLGLIGLVFWLALSLGWASTNVAATIVLVLLFLRTPLLSA- 282
Query: 334 TITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMEREPLISTSGGKFFS 393
VG L + L A +++ ++ + F
Sbjct: 283 ---VGILPTLLTAQV---------------------AFNKIAKLELAPYKADFPRPQAFP 318
Query: 394 HSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD 453
K ++ N+RF+Y +A + ++L I+ G + +IG +GSGKSTLAMLL LY
Sbjct: 319 -DWKT-LELRNVRFAYQ--DNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQ 374
Query: 454 PQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIH 513
PQ+G+IL+DG + R +V + LF +
Sbjct: 375 PQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLGPE-----------------G 417
Query: 514 AAKEANAYGFVIDFKNGFDTIVGERGIM---LSGGQKQRIAIARALIKKSKILLLDEATS 570
A ++ + T + + LS GQK+R+A+ AL+++ IL+LDE +
Sbjct: 418 KASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAA 477
Query: 571 ALD-AENEYLVQSAIEKLIE-GKTVLTIAHRLSTIRKSNQICVLDKGKIVE 619
D A Q + L E GKT+ I+H ++++ + G++ E
Sbjct: 478 DQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSE 528
>gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 352
Score = 83.5 bits (207), Expect = 3e-17
Identities = 63/229 (27%), Positives = 110/229 (48%), Gaps = 42/229 (18%)
Query: 420 DLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELD-----PMYL 474
D + + + +T++ G SGSGK++L ++ L P G+I ++G + + + P
Sbjct: 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEK 75
Query: 475 RSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDT 533
R +IG V Q+ LF T+ N+ YG+ S + FD
Sbjct: 76 R-RIGYVFQDARLFPHYTVRGNLRYGMWKSM-----------------------RAQFDQ 111
Query: 534 IVGERGI---------MLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAI 584
+V GI LSGG+KQR+AI RAL+ ++LL+DE ++LD + + +
Sbjct: 112 LVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYL 171
Query: 585 EKLI-EGKT-VLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHLIKNP 630
E+L E +L ++H L + R ++++ VL+ GK+ G + +P
Sbjct: 172 ERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGSP 220
>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit;
Provisional.
Length = 232
Score = 80.8 bits (200), Expect = 3e-17
Identities = 67/222 (30%), Positives = 102/222 (45%), Gaps = 38/222 (17%)
Query: 422 SLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSV 481
L ++ G +++G SG+GKSTL L+ P +G + ++G D P R + +
Sbjct: 19 DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPS--RRPVSML 76
Query: 482 SQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGI 540
QE LFS T+ +NI G+N + A +E I + GI
Sbjct: 77 FQENNLFSHLTVAQNIGLGLNPGLKLN-----AAQREK------------LHAIARQMGI 119
Query: 541 M---------LSGGQKQRIAIARALIKKSKILLLDEATSALDA--ENEYLV---QSAIEK 586
LSGGQ+QR+A+AR L+++ ILLLDE SALD E L Q E+
Sbjct: 120 EDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQER 179
Query: 587 LIEGKTVLTIAHRLS-TIRKSNQICVLDKGKIVEIGSYAHLI 627
+ T+L ++H L R + + V+ G+I G L+
Sbjct: 180 QL---TLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELL 218
>gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter. This model
describes cyclic peptide transporter in bacteria.
Bacteria have elaborate pathways for the production of
toxins and secondary metabolites. Many such compounds,
including syringomycin and pyoverdine are synthesized on
non-ribosomal templates consisting of a multienzyme
complex. On several occasions the proteins of the
complex and transporter protein are present on the same
operon. Often times these compounds cross the biological
membrane by specific transporters. Syringomycin is an
amphipathic, cylclic lipodepsipeptide when inserted into
host causes formation of channels, permeable to variety
of cations. On the other hand, pyoverdine is a cyclic
octa-peptidyl dihydroxyquinoline, which is efficient in
sequestering iron for uptake [Transport and binding
proteins, Amino acids, peptides and amines, Transport
and binding proteins, Other].
Length = 555
Score = 84.6 bits (209), Expect = 4e-17
Identities = 132/597 (22%), Positives = 228/597 (38%), Gaps = 86/597 (14%)
Query: 62 KKSELKKLFTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMT 121
KK+ + ++ L +S +T S ++ +A A+ ++ I + +E
Sbjct: 1 KKAAIGEILALLRSPFPAIT------AFSIALGLAGGLAIIALLASINNAIHEENFLGQG 54
Query: 122 SLS-----LLLMLVFVVGACCNFGRVYLMNVSAQSITKKLRERLFGSIISQETAYFDKHK 176
SL LL L+F +GA + Y + I LR L I+ D+
Sbjct: 55 SLFSFGGLCLLALLFRIGA--DIFPAY----AGMHIIANLRIALCEKILGAPIEEIDRRG 108
Query: 177 TGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLALIS-----LIIV 231
LI ++ D I+ L ++ +++ F + LA +S + I
Sbjct: 109 AHNLIPLLTHDID--------QINAFLFIFPPIAIALAIFFFCIAYLAYLSVPMFAITIS 160
Query: 232 PPVAGLAIVYGKFVR--KITRNVQDKL--------ANAVQVAEERISNIRTVKSFSQEKL 281
+ G A F+ K +D+ A A E +I IR SF+ +
Sbjct: 161 AIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRR-LSFAHGAI 219
Query: 282 EMSHFN-AKMD----DLFELAKKEALAKGVFFGFTGLSGNAIILSVLYYGGVMVSYETIT 336
+ S N A + +F A+ FG +++ + M + +I
Sbjct: 220 QESANNIADLHIIEILIFIAAEN--------FGQLLFF---LLIGCALFAAAM--FASID 266
Query: 337 VGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLWEIMER------EPLISTSGGK 390
+S+F+L YI + L + L + AC RL + ER E +S +
Sbjct: 267 AAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEPELELSDADNV 326
Query: 391 FFSHSLK--GEIDFNNIRFSYP----SRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTL 444
K I+ ++ + S A L + L+I G + ++G +G GKSTL
Sbjct: 327 LLLAHDKSVDSIELKDVHMNPKAPEGSEGFA--LGPIDLRIAQGDIVFIVGENGCGKSTL 384
Query: 445 AMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSS 504
A L LY PQ G+IL+DG + R ++ + LF I + + +
Sbjct: 385 AKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDEGEHASLDN 444
Query: 505 SVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILL 564
+ + A + GF T LS GQ++R+A+ A ++ ILL
Sbjct: 445 AQQYLQRLEIADKVKIEDG------GFSTTTA-----LSTGQQKRLALICAWLEDRPILL 493
Query: 565 LDEATSALD-AENEYLVQSAIEKLI-EGKTVLTIAHRLSTIRKSNQICVLDKGKIVE 619
DE + D A + + + L +GKT++ I+H ++QI L G IV+
Sbjct: 494 FDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVK 550
>gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 207
Score = 79.5 bits (197), Expect = 6e-17
Identities = 55/183 (30%), Positives = 77/183 (42%), Gaps = 32/183 (17%)
Query: 412 RPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDP 471
R V+ + LS + +G + G +GSGK+TL L+ L P G I +DG DI + D
Sbjct: 12 RGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDV 71
Query: 472 MYLRSQIGSVSQ----EPTLFSGTIYENI-----LYGVNDSSSVTKSDIIHAAKEANAYG 522
+ +P L T+ EN+ G + I AA EA
Sbjct: 72 ---AEACHYLGHRNAMKPAL---TVAENLEFWAAFLGGEELD-------IAAALEAVGLA 118
Query: 523 FVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQS 582
+ G LS GQK+R+A+AR L+ I +LDE T+ALDA L
Sbjct: 119 PLAHLPFG----------YLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAE 168
Query: 583 AIE 585
I
Sbjct: 169 LIR 171
>gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 213
Score = 79.5 bits (196), Expect = 6e-17
Identities = 48/166 (28%), Positives = 84/166 (50%), Gaps = 15/166 (9%)
Query: 413 PDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQ---NGKILIDGVDIKEL 469
P + +L +++ I G + +++G SG GKSTL ++ Q G++ ++ + L
Sbjct: 13 PGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDML 72
Query: 470 DPMYLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFK 528
P R QIG + Q+ LF ++ +N+L+ + + + A+ A + +
Sbjct: 73 -PAAQR-QIGILFQDALLFPHLSVGQNLLFAL-------PATLKGNARRNAANAALE--R 121
Query: 529 NGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDA 574
+G D + LSGGQ+ R+A+ RAL+ + K LLLDE S LD
Sbjct: 122 SGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDV 167
>gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 289
Score = 80.8 bits (199), Expect = 8e-17
Identities = 67/250 (26%), Positives = 120/250 (48%), Gaps = 25/250 (10%)
Query: 395 SLKGEIDFNNIRFSYPSRP--DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLY 452
+I +N+ ++Y + + LN+ SL + +T VIG++GSGKST+ L L
Sbjct: 2 DFSKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLI 61
Query: 453 DPQNGKILIDG----VDIKELDPMY-LRSQIGSVSQEP--TLFSGTIYENILYGVNDSSS 505
+ G+ ++ ++K++ + LR +IG V Q P LF TI ++I +G
Sbjct: 62 ISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFG------ 115
Query: 506 VTKSDIIHAAKEANAYGFV---IDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKI 562
+ + AY V + + V LSGGQK+R+A+A +
Sbjct: 116 ----PVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNT 171
Query: 563 LLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTI-RKSNQICVLDKGKIVE 619
L+LDE T LD + E + E+L + K ++ + H + + R ++++ V+ +GK++
Sbjct: 172 LVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVIS 231
Query: 620 IGSYAHLIKN 629
IGS + N
Sbjct: 232 IGSPFEIFSN 241
>gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of
polysaccharide transport system. The KpsT/Wzt ABC
transporter subfamily is involved in extracellular
polysaccharide export. Among the variety of
membrane-linked or extracellular polysaccharides
excreted by bacteria, only capsular polysaccharides,
lipopolysaccharides, and teichoic acids have been shown
to be exported by ABC transporters. A typical system is
made of a conserved integral membrane and an ABC. In
addition to these proteins, capsular polysaccharide
exporter systems require two 'accessory' proteins to
perform their function: a periplasmic (E.coli) or a
lipid-anchored outer membrane protein called OMA
(Neisseria meningitidis and Haemophilus influenza) and a
cytoplasmic membrane protein MPA2.
Length = 224
Score = 79.5 bits (197), Expect = 9e-17
Identities = 69/246 (28%), Positives = 100/246 (40%), Gaps = 47/246 (19%)
Query: 389 GKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLL 448
K S SLK I + L D+S ++ G +IG +G+GKSTL LL
Sbjct: 13 YKGGSSSLK----KLGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLL 68
Query: 449 LRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENI-----LYGVNDS 503
+Y P +G + + G L P L T ENI L G++
Sbjct: 69 AGIYPPDSGTVTVRGRVSSLLGLG--------GGFNPEL---TGRENIYLNGRLLGLSRK 117
Query: 504 SSVTKSDIIHAAKEANAYGFVIDF---KNGFDTIVGERGIMLSGGQKQRIAIARALIKKS 560
K D +I+F + D V S G K R+A A A +
Sbjct: 118 EIDEKID------------EIIEFSELGDFIDLPVKT----YSSGMKARLAFAIATALEP 161
Query: 561 KILLLDEATSALDAENEYLVQSAIEKLIE----GKTVLTIAHRLSTIRK-SNQICVLDKG 615
ILL+DE + DA + +L E GKTV+ ++H S+I++ ++ VL+KG
Sbjct: 162 DILLIDEVLAVGDAA---FQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKG 218
Query: 616 KIVEIG 621
KI G
Sbjct: 219 KIRFDG 224
>gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport
system, ATPase component [Carbohydrate transport and
metabolism / Cell envelope biogenesis, outer membrane].
Length = 249
Score = 80.0 bits (198), Expect = 9e-17
Identities = 65/240 (27%), Positives = 105/240 (43%), Gaps = 31/240 (12%)
Query: 389 GKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLL 448
S+SLK + + L D+S +I G +IG +G+GKSTL L+
Sbjct: 16 YHEKSYSLKKR--LKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLI 73
Query: 449 LRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENI-LYGVNDSSSVT 507
+Y P +GK+ + G ++ P+ +P L T ENI L G+ +T
Sbjct: 74 AGIYKPTSGKVKVTG----KVAPLI----ELGAGFDPEL---TGRENIYLRGL--ILGLT 120
Query: 508 KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDE 567
+ +I E + + DF D V S G R+A + A + ILLLDE
Sbjct: 121 RKEIDEKVDEIIEFAELGDFI---DQPVKT----YSSGMYARLAFSVATHVEPDILLLDE 173
Query: 568 ATSALDAENEYLVQSAIEKLIE----GKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGS 622
+ DA + +E+L E KT++ ++H L I++ ++ L+ G+I GS
Sbjct: 174 VLAVGDA---AFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGS 230
>gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase
component [General function prediction only].
Length = 249
Score = 79.7 bits (197), Expect = 1e-16
Identities = 66/227 (29%), Positives = 112/227 (49%), Gaps = 24/227 (10%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDG-VDIKELD-PMYLR 475
LNDLS + G + +IG +G+GK+TL ++ PQ G++L DG D+ +L R
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIAR 80
Query: 476 SQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTI 534
+ IG Q+PT+F T+ EN+ +N SV S + + D +
Sbjct: 81 AGIGRKFQKPTVFENLTVRENLELALNRDKSVFAS---------LFARLRAEERRRIDEL 131
Query: 535 VG------ERGIM---LSGGQKQRIAIARALIKKSKILLLDEATSAL-DAENEYLVQSAI 584
+ ER + LS GQKQ + I L + K+LLLDE + + DAE E + +
Sbjct: 132 LATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAE-LL 190
Query: 585 EKLIEGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLIKNP 630
+ L ++L + H + +R+ ++++ VL +G ++ GS + +P
Sbjct: 191 KSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEVQNDP 237
>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter
subunit; Provisional.
Length = 262
Score = 79.7 bits (196), Expect = 1e-16
Identities = 65/234 (27%), Positives = 110/234 (47%), Gaps = 15/234 (6%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD----PQNGKILIDGVDIKE----L 469
L+ + L I G M +++G SGSGKSTL L L + L+ +E
Sbjct: 20 LHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLAR 79
Query: 470 DPMYLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFK 528
D R+ G + Q+ L + ++ EN+L G S+ ++ +E +
Sbjct: 80 DIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTR 139
Query: 529 NGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKL- 587
G +R LSGGQ+QR+AIARAL++++K++L DE ++LD E+ +V + +
Sbjct: 140 VGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDIN 199
Query: 588 -IEGKTVLTIAHRLS-TIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLMK 639
+G TV+ H++ +R +I L +G + GS N F+ L +
Sbjct: 200 QNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQF---DNERFDHLYR 250
>gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding
protein; Provisional.
Length = 265
Score = 79.6 bits (196), Expect = 2e-16
Identities = 64/215 (29%), Positives = 103/215 (47%), Gaps = 16/215 (7%)
Query: 416 VILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLR 475
+ +L+++I G T++IG +G GKSTL L RL P +G + +DG I+ +
Sbjct: 21 TVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVA 80
Query: 476 SQIGSVSQEPTLFSG-TIYENILYGVNDSSSV----TKSDIIHAAKEANAYGFVIDFKNG 530
+IG ++Q T T+ E + G + K D K A G
Sbjct: 81 RRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQS 140
Query: 531 FDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKL--I 588
DT LSGGQ+QR IA L +++ I+LLDE T+ LD ++ + + +L
Sbjct: 141 VDT--------LSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNRE 192
Query: 589 EGKTVLTIAHRLS-TIRKSNQICVLDKGKIVEIGS 622
+G T+ + H L+ R ++ + L +GKIV G+
Sbjct: 193 KGYTLAAVLHDLNQACRYASHLIALREGKIVAQGA 227
>gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 325
Score = 80.1 bits (198), Expect = 3e-16
Identities = 61/218 (27%), Positives = 97/218 (44%), Gaps = 22/218 (10%)
Query: 420 DLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479
D+S +I G + +G++G+GKST +L L P +GK+ ++G D YLRS IG
Sbjct: 42 DISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRS-IG 100
Query: 480 SVSQEPTLFSGTIYENILYGVNDSSSVTKSDI--IHAAKEANAYGFVIDFKNGFDTIVGE 537
V ++ DS V K I I + A F+ + + +
Sbjct: 101 LVM---GQKLQLWWDL---PALDSLEVLKL-IYEIPDDEFAERLDFLTEIL-DLEGFLKW 152
Query: 538 RGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI------EGK 591
LS GQ+ R +A AL+ K+L LDE T LD Q+ I + +
Sbjct: 153 PVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDV----NAQANIREFLKEYNEERQA 208
Query: 592 TVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLIK 628
TVL H I +++ ++D+G++V G+ A L +
Sbjct: 209 TVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQE 246
>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein;
Provisional.
Length = 623
Score = 81.4 bits (201), Expect = 4e-16
Identities = 74/242 (30%), Positives = 112/242 (46%), Gaps = 42/242 (17%)
Query: 420 DLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRS--- 476
+S + G S++G SGSGKST LLRL + Q G+I+ +G I L P L++
Sbjct: 342 KVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRR 401
Query: 477 ------QIGSVSQEPTLFSG-TIYE-----NILYGVNDSSSVTKSDIIHAAKEANAYGFV 524
Q S +P G +I E +L G ++ V +A+ +
Sbjct: 402 DIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYP 461
Query: 525 IDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAI 584
+F SGGQ+QRI IARAL K+++ DEA SALD ++ I
Sbjct: 462 HEF---------------SGGQRQRICIARALALNPKVIIADEAVSALDVS----IRGQI 502
Query: 585 EKLI------EGKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGSYAHLIKNPNSMFN-K 636
L+ G L I+H ++ + R S+++ V+ G+IVEIG + +NP + K
Sbjct: 503 INLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAVFENPQHPYTRK 562
Query: 637 LM 638
LM
Sbjct: 563 LM 564
Score = 74.5 bits (183), Expect = 7e-14
Identities = 66/259 (25%), Positives = 118/259 (45%), Gaps = 37/259 (14%)
Query: 404 NIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDG 463
NI F + A + N LS +Q G +++G SGSGKS A+ L+RL + G + D
Sbjct: 19 NIAFMQEQQKIAAVRN-LSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDK 77
Query: 464 ----------VDIKELDPMYLR----SQIGSVSQEPT-----LFSGTIYENILYGVNDSS 504
+++ E +R + + + QEP +F T+ E I +
Sbjct: 78 MLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVF--TVGEQIAESIRLHQ 135
Query: 505 SVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILL 564
++ + + AK + + + TI+ LSGG +QR+ IA AL + +L+
Sbjct: 136 GASREEAMVEAKRMLDQVRIPEAQ----TILSRYPHQLSGGMRQRVMIAMALSCRPAVLI 191
Query: 565 LDEATSALDAENEYLVQSAIEKLIE------GKTVLTIAHRLSTIRK-SNQICVLDKGKI 617
DE T+ALD +Q+ I +LI+ V+ I H + + + ++++ V+ +G+
Sbjct: 192 ADEPTTALDVT----IQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEA 247
Query: 618 VEIGSYAHLIKNPNSMFNK 636
VE GS + P + +
Sbjct: 248 VETGSVEQIFHAPQHPYTR 266
>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding
protein; Provisional.
Length = 241
Score = 77.6 bits (191), Expect = 5e-16
Identities = 56/221 (25%), Positives = 114/221 (51%), Gaps = 19/221 (8%)
Query: 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRS 476
++ D+SL + SG + ++G +G+GK+T +++ + G I+ID DI L P++ R+
Sbjct: 18 VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLL-PLHARA 76
Query: 477 Q--IGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDT 533
+ IG + QE ++F ++Y+N++ + ++ A E + ++
Sbjct: 77 RRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSM-- 134
Query: 534 IVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE-GKT 592
G LSGG+++R+ IARAL K +LLDE + +D + ++ IE L + G
Sbjct: 135 -----GQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLG 189
Query: 593 VLTIAHRLSTIRKSNQIC----VLDKGKIVEIGSYAHLIKN 629
VL H +R++ +C ++ +G ++ G+ ++++
Sbjct: 190 VLITDH---NVRETLAVCERAYIVSQGHLIAHGTPTEILQD 227
>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 78.3 bits (193), Expect = 5e-16
Identities = 70/243 (28%), Positives = 121/243 (49%), Gaps = 27/243 (11%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
I+ ++ +SY +A LN+++ S +VIG +G+GKSTL + P +G +
Sbjct: 4 IETRDLCYSYSGSKEA--LNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSV 61
Query: 460 LIDGVDIKELDPMYLRSQIGSVSQEP--TLFSGTIYENILYG-VN---DSSSVTK--SDI 511
LI G I + + +R +G V Q P +FS T+ ++I +G +N D +V S
Sbjct: 62 LIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSA 121
Query: 512 IHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSA 571
+H G + + LSGG+K+R+AIA + + ++L+LDE T+
Sbjct: 122 LHML--------------GLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAG 167
Query: 572 LDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLIK 628
LD + + + L E G TV+ H+L + + ++ I V+DKG+IV G+ +
Sbjct: 168 LDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFL 227
Query: 629 NPN 631
P+
Sbjct: 228 QPD 230
>gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding
protein OppF; Provisional.
Length = 331
Score = 79.4 bits (196), Expect = 5e-16
Identities = 69/262 (26%), Positives = 121/262 (46%), Gaps = 57/262 (21%)
Query: 407 FSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDI 466
+ P AV + ++L++ G V+G SG GKST A ++ L +G++ G D+
Sbjct: 28 WQPPKTLKAV--DGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDL 85
Query: 467 KELDPMYL---RSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDII---------HA 514
+ RS I + Q+P L +N +T +II
Sbjct: 86 LGMKDDEWRAVRSDIQMIFQDP-----------LASLN--PRMTIGEIIAEPLRTYHPKL 132
Query: 515 AKEANAYGFVIDFKNGFDTIVGERGIM----------LSGGQKQRIAIARALIKKSKILL 564
+++ + K+ ++ + G++ SGGQ QRI IARALI + K+++
Sbjct: 133 SRQ--------EVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLII 184
Query: 565 LDEATSALDAENEYLVQSAIEKLIE------GKTVLTIAHRLSTIRK-SNQICVLDKGKI 617
DE SALD +Q+ + L++ G +++ IAH L+ ++ S+++ V+ G
Sbjct: 185 CDEPVSALDVS----IQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHA 240
Query: 618 VEIGSYAHLIKNPNSMFNK-LM 638
VE+G+Y + NP + K LM
Sbjct: 241 VELGTYDEVYHNPLHPYTKALM 262
>gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding
protein SapF; Provisional.
Length = 267
Score = 77.9 bits (192), Expect = 7e-16
Identities = 65/225 (28%), Positives = 113/225 (50%), Gaps = 28/225 (12%)
Query: 420 DLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQ-I 478
LS ++ G ++IG +GSGKSTLA +L + +P +G++LID + D Y RSQ I
Sbjct: 31 PLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSY-RSQRI 89
Query: 479 GSVSQEPTLF------SGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFD 532
+ Q+P+ I + L D + I G + D + +
Sbjct: 90 RMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIET--LRQVGLLPDHASYYP 147
Query: 533 TIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI---- 588
ML+ GQKQR+ +ARALI + K+++ DEA ++LD ++S + L+
Sbjct: 148 H-------MLAPGQKQRLGLARALILRPKVIIADEALASLDMS----MRSQLINLMLELQ 196
Query: 589 --EGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLIKNP 630
+G + + + L ++ S+Q+ V+ +G++VE GS A ++ +P
Sbjct: 197 EKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVLASP 241
>gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding
protein UrtD. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 242
Score = 76.8 bits (190), Expect = 1e-15
Identities = 63/226 (27%), Positives = 105/226 (46%), Gaps = 23/226 (10%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELD-PMYLRS 476
LNDLSL + G + +IG +G+GK+T+ ++ P G +L G D+ L R+
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARA 77
Query: 477 QIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKS----------DIIHAAKEANAYGFVI 525
IG Q+PT+F T++EN+ + SV S D I E I
Sbjct: 78 GIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLE------TI 131
Query: 526 DFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIE 585
+ D + G LS GQKQ + I L++ K+LLLDE + + E ++
Sbjct: 132 GLADEADRLAGL----LSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLK 187
Query: 586 KLIEGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLIKNP 630
L +V+ + H + +R ++++ VL +G ++ GS + +P
Sbjct: 188 SLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQADP 233
>gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding
protein. Members of this protein family are the
ATP-binding subunit of a three-protein transporter. This
family belongs, more broadly, to the family of proline
and glycine-betaine transporters, but members have been
identified by direct characterization and by
bioinformatic means as choline transporters. Many
species have several closely-related members of this
family, probably with variable abilities to act
additionally on related quaternary amines [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 382
Score = 79.1 bits (195), Expect = 1e-15
Identities = 67/230 (29%), Positives = 120/230 (52%), Gaps = 28/230 (12%)
Query: 419 NDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILI-DG---VDIKELDPMYL 474
++ SL I+ G + ++G SGSGKSTL + L G +L+ DG VD+ D L
Sbjct: 41 HNASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDAATL 100
Query: 475 R----SQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKN 529
R ++ V Q+ L T+ EN+ +G+ + + K++ E ++
Sbjct: 101 RRLRTHRVSMVFQQFALLPWRTVEENVAFGL-EMQGMPKAERRKRVDEQLE---LVGLAQ 156
Query: 530 GFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIE-KLI 588
D GE LSGG +QR+ +ARA ++ ILL+DE SALD L+++ ++ +L+
Sbjct: 157 WADRKPGE----LSGGMQQRVGLARAFATEAPILLMDEPFSALDP----LIRTQLQDELL 208
Query: 589 E-----GKTVLTIAHRL-STIRKSNQICVLDKGKIVEIGSYAHLIKNPNS 632
E KT++ ++H L ++ N+I +++ G+I++ G+ ++ NP +
Sbjct: 209 ELQSKLKKTIVFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPAN 258
>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein;
Provisional.
Length = 501
Score = 79.6 bits (197), Expect = 1e-15
Identities = 68/229 (29%), Positives = 114/229 (49%), Gaps = 26/229 (11%)
Query: 402 FNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILI 461
F+ I ++P L+D+S ++G + +++G +G+GKSTL +L Y P G ILI
Sbjct: 7 FDGIGKTFPG---VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILI 63
Query: 462 DGVDIKELDPM-YLRSQIGSVSQE----PTLFSGTIYENILYGV--NDSSSVTKSDII-H 513
DG +++ L + + + QE P + T+ EN+ G + V + +
Sbjct: 64 DGQEMRFASTTAALAAGVAIIYQELHLVPEM---TVAENLYLGQLPHKGGIVNRRLLNYE 120
Query: 514 AAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALD 573
A ++ G ID DT + LS GQ+Q + IA+AL + ++++ DE TS+L
Sbjct: 121 AREQLEHLGVDID----PDTPLKY----LSIGQRQMVEIAKALARNARVIAFDEPTSSLS 172
Query: 574 A-ENEYLVQSAIEKL-IEGKTVLTIAHRLSTI-RKSNQICVLDKGKIVE 619
A E E L I +L EG+ +L ++HR+ I + I V G+ V
Sbjct: 173 AREIEQLF-RVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVA 220
Score = 43.7 bits (104), Expect = 3e-04
Identities = 59/218 (27%), Positives = 101/218 (46%), Gaps = 36/218 (16%)
Query: 422 SLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSV 481
S +++G + + G G+G+S L LL G++ +DG P+ +RS ++
Sbjct: 273 SFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGK------PIDIRSPRDAI 326
Query: 482 SQEPTL------FSG-----TIYENILYGVNDSS---SVTKSDIIHAAKEA-NAYGFVID 526
L G ++ +NI N S+ + +I+ EA NA F+
Sbjct: 327 RAGIMLCPEDRKAEGIIPVHSVADNI----NISARRHHLRAGCLINNRWEAENADRFIRS 382
Query: 527 FKNGFDTIVGERGIM-LSGGQKQRIAIARALIKKSKILLLDEATSALD--AENE-YLVQS 582
T E+ IM LSGG +Q+ + R L + K++LLDE T +D A++E Y V
Sbjct: 383 LN--IKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNV-- 438
Query: 583 AIEKLIE-GKTVLTIAHRL-STIRKSNQICVLDKGKIV 618
I +L G VL ++ L + +++I V+ +G+I
Sbjct: 439 -IYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIA 475
>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection
ABC transporter, ATP-binding subunit. Model TIGR03731
represents the family of all lantibiotics related to
gallidermin, including epidermin, mutatin, and nisin.
This protein family describes the ATP-binding subunit of
a gallidermin/epidermin class lantibiotic protection
transporter. It is largely restricted to
gallidermin-family lantibiotic biosynthesis and export
cassettes, but also occurs in orphan transporter
cassettes in species that lack candidate lantibiotic
precursor and synthetase genes.
Length = 223
Score = 75.9 bits (187), Expect = 2e-15
Identities = 61/212 (28%), Positives = 107/212 (50%), Gaps = 35/212 (16%)
Query: 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRS 476
+N++SL + S+ ++G +G+GKSTL ++ + P +G+I+ DG D L
Sbjct: 15 AVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKD---LHK 71
Query: 477 QIGSVSQEPTLFSG-TIYENI-----LYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNG 530
IGS+ + P L+ T EN+ L G+ DS ++++ ++D N
Sbjct: 72 -IGSLIESPPLYENLTARENLKVHTTLLGLPDS---RIDEVLN----------IVDLTNT 117
Query: 531 FDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALD----AENEYLVQSAIEK 586
+ S G KQR+ IA AL+ K+L+LDE T+ LD E L++S E+
Sbjct: 118 GKKKAKQ----FSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQ 173
Query: 587 LIEGKTVLTIAHRLSTIRK-SNQICVLDKGKI 617
G TV+ +H LS +++ ++ I ++ +G +
Sbjct: 174 ---GITVILSSHILSEVQQLADHIGIISEGVL 202
>gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 200
Score = 75.4 bits (185), Expect = 2e-15
Identities = 59/213 (27%), Positives = 104/213 (48%), Gaps = 25/213 (11%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
+D + F Y +P +L +S + +G + + GS+G+GK+TL L+ L +P+ G+I
Sbjct: 2 LDVIELDFDYHDQP---LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEI 58
Query: 460 LIDGVDIKELDPMYLRSQIGSVSQE----PTLFSGTIYENILYGVNDSSSVTKSDIIHAA 515
L + IK+ D + Q+ V P L T+ EN LY ++ S I
Sbjct: 59 LFERQSIKK-DLCTYQKQLCFVGHRSGINPYL---TLRENCLYDIHFSPGAVG---ITEL 111
Query: 516 KEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAE 575
+ +ID+ G +LS GQK+++A+ R + K+K+ LLDE ALD
Sbjct: 112 CRLFSLEHLIDYPCG----------LLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDEL 161
Query: 576 NEYLVQSAIEK-LIEGKTVLTIAHRLSTIRKSN 607
+ + + I++ +G VL +H+ + K++
Sbjct: 162 SLLTIITKIQEHRAKGGAVLLTSHQDLPLNKAD 194
>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit;
Provisional.
Length = 233
Score = 76.0 bits (187), Expect = 2e-15
Identities = 55/166 (33%), Positives = 86/166 (51%), Gaps = 15/166 (9%)
Query: 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMY--- 473
+L+++S I G M +++GSSGSGKSTL LL L P +G ++ +G + +L
Sbjct: 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE 83
Query: 474 LRSQ-IGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAK--EANAYGFVIDFKNG 530
LR+Q +G + Q + ++L +V +I K E N+ + G
Sbjct: 84 LRNQKLGFIYQ---------FHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVG 134
Query: 531 FDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAEN 576
+ R LSGG++QR+AIARAL+ +++L DE T LDA N
Sbjct: 135 LEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARN 180
>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit;
Provisional.
Length = 305
Score = 77.0 bits (190), Expect = 2e-15
Identities = 64/238 (26%), Positives = 106/238 (44%), Gaps = 47/238 (19%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIK---------- 467
L+++S++I G ++IG +GSGK+T L L P G I D K
Sbjct: 23 LDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK 82
Query: 468 -----ELDPMY---------LRSQIGSVSQ--EPTLFSGTIYENILYGVNDSSSVTKSDI 511
+ +R ++G V Q E LF TI ++I++G S V+K +
Sbjct: 83 VLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPV-SMGVSKEE- 140
Query: 512 IHAAKEANAY----GFVIDF--KNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLL 565
A K A Y G + ++ F+ LSGGQK+R+A+A L + L+
Sbjct: 141 --AKKRAAKYIELVGLDESYLQRSPFE---------LSGGQKRRVALAGILAMEPDFLVF 189
Query: 566 DEATSALDAENEYLVQSAIEKL-IEGKTVLTIAHRL-STIRKSNQICVLDKGKIVEIG 621
DE T+ LD + + + L +GKT++ + H L + + + + GKI++ G
Sbjct: 190 DEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKDGKIIKDG 247
>gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD;
Provisional.
Length = 254
Score = 75.5 bits (186), Expect = 3e-15
Identities = 62/253 (24%), Positives = 107/253 (42%), Gaps = 43/253 (16%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDP----Q 455
I+ NI +++ +SL +Q G + +++G SGSGKS L +
Sbjct: 5 IELRNIALQ----AAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQT 60
Query: 456 NGKILIDGVDIKELDPMYLRSQ-IGSVSQEP--------TLFSGTIYENILYGVNDSSSV 506
G++L+DG K + P LR + I ++ Q P T+ + E L +
Sbjct: 61 AGRVLLDG---KPVAPCALRGRKIATIMQNPRSAFNPLHTMHTHAR-ETCLALGKPADDA 116
Query: 507 TKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLD 566
T + + A NA ++ +SGG QR+ IA AL+ ++ ++ D
Sbjct: 117 TLTAALEAVGLENA-----------ARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIAD 165
Query: 567 EATSALDAENEYLVQSAIEKLIE------GKTVLTIAHRLSTI-RKSNQICVLDKGKIVE 619
E T+ LD + Q+ I L+E +L + H + + R ++ + V+ G+IVE
Sbjct: 166 EPTTDLDV----VAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVE 221
Query: 620 IGSYAHLIKNPNS 632
G L P
Sbjct: 222 QGDVETLFNAPKH 234
>gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug
resistance-like subfamily G of ATP-binding cassette
transporters. The pleiotropic drug resistance (PDR) is
a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. This PDR subfamily represents
domain I of its (ABC-IM)2 organization. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds including
sugars, ions, peptides, and more complex organic
molecules. The nucleotide-binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 202
Score = 73.1 bits (180), Expect = 9e-15
Identities = 57/231 (24%), Positives = 91/231 (39%), Gaps = 47/231 (20%)
Query: 400 IDFNNI-RFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLL---LRLYDPQ 455
+ + NI + R IL D S ++ G M V+G GSG STL L
Sbjct: 4 LSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSV 63
Query: 456 NGKILIDGVDIKELDPMYLRSQIGSVSQE----PTLFSGTIYENILYGVNDSSSVTKSDI 511
G I +G+ KE Y +I VS+E PTL T +
Sbjct: 64 EGDIHYNGIPYKEFAEKY-PGEIIYVSEEDVHFPTL-------------------TVRET 103
Query: 512 IHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSA 571
+ A FV RGI SGG+++R++IA AL+ ++ +L D +T
Sbjct: 104 LDFALRCKGNEFV-------------RGI--SGGERKRVSIAEALVSRASVLCWDNSTRG 148
Query: 572 LDAENEYLVQSAIEKL--IEGKTVLTIAHRLS--TIRKSNQICVLDKGKIV 618
LD+ + I + + T ++ S +++ VL +G+ +
Sbjct: 149 LDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQI 199
>gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette
domain 2 of RNase L inhibitor. The ABC ATPase, RNase L
inhibitor (RLI), is a key enzyme in ribosomal
biogenesis, formation of translation preinitiation
complexes, and assembly of HIV capsids. RLI's are not
transport proteins and thus cluster with a group of
soluble proteins that lack the transmembrane components
commonly found in other members of the family.
Structurally, RLI's have an N-terminal Fe-S domain and
two nucleotide-binding domains which are arranged to
form two composite active sites in their interface
cleft. RLI is one of the most conserved enzymes between
archaea and eukaryotes with a sequence identity of more
than 48%. The high degree of evolutionary conservation
suggests that RLI performs a central role in archaeal
and eukaryotic physiology.
Length = 246
Score = 73.6 bits (181), Expect = 1e-14
Identities = 46/191 (24%), Positives = 83/191 (43%), Gaps = 36/191 (18%)
Query: 418 LNDLSLKIQSGSMTS-----VIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPM 472
L + +L+++ GS++ ++G +G GK+T +L + P G I I+ + P
Sbjct: 10 LGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTV-SYKPQ 68
Query: 473 YLRSQIGSVSQEPTLFSGTIYENILYGVND---SSSVTKSDIIHAAKEANAYGFVIDFKN 529
Y+++ + GT+ + +L + + K++I +
Sbjct: 69 YIKAD----------YEGTVRD-LLSSITKDFYTHPYFKTEIAKPLQ------------- 104
Query: 530 GFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE 589
+ I+ LSGG+ QR+AIA L K + I LLDE ++ LD E + I + E
Sbjct: 105 -IEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAE 163
Query: 590 G--KTVLTIAH 598
KT + H
Sbjct: 164 NNEKTAFVVEH 174
>gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug
resistance-like (PDR) subfamily G of ATP-binding
cassette transporters. The pleiotropic drug resistance
(PDR) is a well-described phenomenon occurring in fungi
and shares several similarities with processes in
bacteria and higher eukaryotes. This PDR subfamily
represents domain I of its (ABC-IM)2 organization. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds
including sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 192
Score = 72.3 bits (178), Expect = 1e-14
Identities = 58/223 (26%), Positives = 101/223 (45%), Gaps = 48/223 (21%)
Query: 400 IDFNNIRFSYPS-RPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQ--N 456
+ + N+ ++ P +LN++S ++ G++T+++G SG+GK+TL +L
Sbjct: 4 LTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVIT 63
Query: 457 GKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAA 515
G+ILI+G + LD + RS G V Q+ T+ E + + A
Sbjct: 64 GEILING---RPLDKNFQRS-TGYVEQQDVHSPNLTVREALRF--------------SAL 105
Query: 516 KEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAE 575
RG LS Q++R+ I L K IL LDE TS LD++
Sbjct: 106 L---------------------RG--LSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQ 142
Query: 576 NEYLVQSAIEKLIE-GKTVLTIAHRLS--TIRKSNQICVLDKG 615
Y + ++KL + G+ +L H+ S K +++ +L +G
Sbjct: 143 AAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRG 185
>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit;
Provisional.
Length = 506
Score = 75.7 bits (187), Expect = 2e-14
Identities = 65/218 (29%), Positives = 114/218 (52%), Gaps = 37/218 (16%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQ---NGKILIDGVD-----IKEL 469
L+++SLK+++G + S+ G +G+GKSTL +L +Y P G+I+ +G + I++
Sbjct: 21 LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVY-PHGTYEGEIIFEGEELQASNIRDT 79
Query: 470 DPMYLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIH-------AAKEANAY 521
+ R+ I + QE L ++ ENI G + +T I+ A K
Sbjct: 80 E----RAGIAIIHQELALVKELSVLENIFLG----NEITPGGIMDYDAMYLRAQKLLAQL 131
Query: 522 GFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSAL-DAENEYLV 580
I+ T VG L GQ+Q + IA+AL K++++L+LDE T++L ++E L+
Sbjct: 132 KLDINP----ATPVGN----LGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLL 183
Query: 581 QSAIEKLIE-GKTVLTIAHRLSTIRK-SNQICVLDKGK 616
I L G + I+H+L+ ++ S+ ICV+ G+
Sbjct: 184 -DIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGR 220
Score = 43.0 bits (102), Expect = 4e-04
Identities = 60/226 (26%), Positives = 98/226 (43%), Gaps = 30/226 (13%)
Query: 410 PSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQN-GKILIDG--VDI 466
P P ++D+S ++ G + + G G+G++ L L Y + G+I IDG V I
Sbjct: 270 PVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKI 329
Query: 467 KE-LDPMYLRSQIGSVSQE-------PTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEA 518
+ + I V ++ P + G +NI D T I A E
Sbjct: 330 RNPQQAI--AQGIAMVPEDRKRDGIVPVMGVG---KNITLAALDR--FTGGSRIDDAAEL 382
Query: 519 NAYGFVIDFKNGFDTIVGERGIM-LSGGQKQRIAIARALIKKSKILLLDEATSALDAENE 577
I + T E I LSGG +Q+ +A+ L+ KIL+LDE T +D +
Sbjct: 383 KTILESIQ-RLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAK 441
Query: 578 YLVQSAIEKLI-----EGKTVLTIAHRLSTIRK-SNQICVLDKGKI 617
Y I KLI +G ++ I+ L + S+++ V+ +GK+
Sbjct: 442 Y----EIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKL 483
>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding
protein LsrA; Provisional.
Length = 510
Score = 75.5 bits (186), Expect = 2e-14
Identities = 59/213 (27%), Positives = 100/213 (46%), Gaps = 28/213 (13%)
Query: 416 VILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDP---- 471
+L + + +G + +++G +G+GKSTL ++ + P +G + I G L P
Sbjct: 25 EVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAH 84
Query: 472 ---MYLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDF 527
+YL V QEP LF ++ ENIL+G+ + + +D
Sbjct: 85 QLGIYL------VPQEPLLFPNLSVKENILFGL-PKRQASMQKMKQLLAALGCQ-LDLDS 136
Query: 528 KNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALD-AENEYLVQSAIEK 586
G L +Q + I R L++ S+IL+LDE T++L AE E L E
Sbjct: 137 SAG----------SLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIREL 186
Query: 587 LIEGKTVLTIAHRLSTIRK-SNQICVLDKGKIV 618
L +G ++ I+H+L IR+ +++I V+ G I
Sbjct: 187 LAQGVGIVFISHKLPEIRQLADRISVMRDGTIA 219
Score = 48.5 bits (116), Expect = 8e-06
Identities = 54/219 (24%), Positives = 101/219 (46%), Gaps = 39/219 (17%)
Query: 420 DLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479
++SL++++G + + G G+G++ LA L L + G+I+++G +I L R G
Sbjct: 281 NISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTA-QRLARG 339
Query: 480 SV-----SQEPTLF-SGTIYENILYGVNDSSSVTKSDI---IHAAKEA---NAYGFVIDF 527
V Q L+ + N+ ++T + I A+E Y ++
Sbjct: 340 LVYLPEDRQSSGLYLDAPLAWNV-------CALTHNRRGFWIKPARENAVLERYRRALNI 392
Query: 528 K-NGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALD--AENEYLVQSAI 584
K N + LSGG +Q++ IA+ L ++L++DE T +D A N+ I
Sbjct: 393 KFNHAEQAART----LSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARND------I 442
Query: 585 EKLIE-----GKTVLTIAHRLSTIRK-SNQICVLDKGKI 617
+LI VL I+ L I + ++++ V+ +G+I
Sbjct: 443 YQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEI 481
>gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed.
Length = 251
Score = 72.8 bits (179), Expect = 3e-14
Identities = 64/214 (29%), Positives = 101/214 (47%), Gaps = 50/214 (23%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
+ N+ S+ R +L+D+SL+++ G + +++G +G+GKSTL ++L L P G I
Sbjct: 5 VSLENVSVSFGQR---RVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI 61
Query: 460 LIDGVDIKELDPMYLRSQIGSVSQ----EPTL-FSGTIYENILYGVNDSSSVTKSDIIHA 514
+G LR IG V Q + TL + + + G K DI+ A
Sbjct: 62 KRNG---------KLR--IGYVPQKLYLDTTLPLTVNRFLRLRPGTK------KEDILPA 104
Query: 515 AKEANAYGFVIDFKNGFDTIVGERGIM--LSGGQKQRIAIARALIKKSKILLLDEATSAL 572
K A G +ID M LSGG+ QR+ +ARAL+ + ++L+LDE T +
Sbjct: 105 LKRVQA-GHLIDAP------------MQKLSGGETQRVLLARALLNRPQLLVLDEPTQGV 151
Query: 573 DAENEYLVQSAIEKLIE------GKTVLTIAHRL 600
D Q A+ LI+ VL ++H L
Sbjct: 152 DVNG----QVALYDLIDQLRRELDCAVLMVSHDL 181
>gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c
biogenesis, ATPase component [Posttranslational
modification, protein turnover, chaperones].
Length = 209
Score = 71.6 bits (176), Expect = 3e-14
Identities = 47/173 (27%), Positives = 76/173 (43%), Gaps = 23/173 (13%)
Query: 411 SRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKE-- 468
R + + +DLS + +G + G +G+GK+TL +L L P G++ G I+
Sbjct: 11 ERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVR 70
Query: 469 ----LDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFV 524
+YL Q G + E T EN+ + S + I A + G
Sbjct: 71 ESYHQALLYLGHQPG-IKTELTAL-----ENLHFWQRFHGSGNAATIWEALAQVGLAGLE 124
Query: 525 IDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENE 577
D VG+ LS GQ++R+A+AR + + + +LDE +ALD E
Sbjct: 125 -------DLPVGQ----LSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGV 166
>gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 300
Score = 73.2 bits (180), Expect = 4e-14
Identities = 53/208 (25%), Positives = 112/208 (53%), Gaps = 15/208 (7%)
Query: 414 DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMY 473
D ++++S ++ G + ++G +G+GK+T ++L L +P G+I +G + +
Sbjct: 14 DKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEI--- 70
Query: 474 LRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFD 532
+++IG + +E L+ T+ + + Y + + + K++I K+ A+ ++
Sbjct: 71 -KNRIGYLPEERGLYPKMTVEDQLKY-LAELKGMPKAEI---QKKLQAWLERLEIVGKKT 125
Query: 533 TIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKL-IEGK 591
+ E LS G +Q+I A+I + ++L+LDE S LD N L++ AI +L EG
Sbjct: 126 KKIKE----LSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGA 181
Query: 592 TVLTIAHRLSTIRK-SNQICVLDKGKIV 618
T++ +HR+ + + +++ +L KG+ V
Sbjct: 182 TIIFSSHRMEHVEELCDRLLMLKKGQTV 209
>gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA. This
model describes the cyt c biogenesis protein encoded by
ccmA in bacteria. An exception is, an arabidopsis
protein. Quite likely this is encoded by an organelle.
Bacterial c-type cytocromes are located on the
periplasmic side of the cytoplasmic membrane. Several
gene products encoded in a locus designated as 'ccm' are
implicated in the transport and assembly of the
functional cytochrome C. This cluster includes genes:
ccmA;B;C;D;E;F;G and H. The posttranslational pathway
includes the transport of heme moiety, the secretion of
the apoprotein and the covalent attachment of the heme
with the apoprotein. The proteins ccmA and B represent
an ABC transporter; ccmC and D participate in heme
transfer to ccmE, which function as a periplasmic heme
chaperone. The presence of ccmF, G and H is suggested to
be obligatory for the final functional assembly of
cytochrome c [Protein fate, Protein and peptide
secretion and trafficking, Transport and binding
proteins, Other].
Length = 198
Score = 70.5 bits (173), Expect = 6e-14
Identities = 50/195 (25%), Positives = 85/195 (43%), Gaps = 20/195 (10%)
Query: 411 SRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELD 470
SR + ++ LS + +G V G +G GK+TL +L L P +G++ +G + E
Sbjct: 9 SRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR 68
Query: 471 PMYLRS--QIGSVSQ-EPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDF 527
R+ +G + +P L + EN L+ + I A GF
Sbjct: 69 DEPHRNILYLGHLPGLKPEL---SALEN-LHFWAAIHGGAQRTIEDALAAVGLTGFE--- 121
Query: 528 KNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKL 587
D + LS GQ++R+A+AR + ++ + +LDE T+ALD L+ +
Sbjct: 122 ----DLPAAQ----LSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAH 173
Query: 588 IE--GKTVLTIAHRL 600
+ G +LT L
Sbjct: 174 LARGGIVLLTTHQDL 188
>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional.
Length = 590
Score = 74.5 bits (184), Expect = 7e-14
Identities = 63/243 (25%), Positives = 102/243 (41%), Gaps = 68/243 (27%)
Query: 396 LKGEIDFNNIRFSYPSRPDAVI------------------------LNDLSLKIQSGSM- 430
LKG + N+R RP+ + L D SL+++ G +
Sbjct: 308 LKGYLPEENMRI----RPEPIEFEERPPRDESERETLVEYPDLTKKLGDFSLEVEGGEIY 363
Query: 431 ----TSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDI--KELDPMYLRSQIGSVSQE 484
++G +G GK+T A LL + P G++ + + I K P Y++
Sbjct: 364 EGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-LKISYK---PQYIKPD------- 412
Query: 485 PTLFSGTIYENILYGVND--SSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIML 542
+ GT+ + +L + D SS KS+II ++ D V + L
Sbjct: 413 ---YDGTVED-LLRSITDDLGSSYYKSEIIK--------PLQLE--RLLDKNVKD----L 454
Query: 543 SGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRL 600
SGG+ QR+AIA L + + + LLDE ++ LD E V AI ++ E T L + H +
Sbjct: 455 SGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDI 514
Query: 601 STI 603
I
Sbjct: 515 YMI 517
Score = 54.4 bits (132), Expect = 1e-07
Identities = 27/59 (45%), Positives = 34/59 (57%)
Query: 542 LSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRL 600
LSGG+ QR+AIA AL++ + DE TS LD V I +L EGK VL + H L
Sbjct: 213 LSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDL 271
>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog
[General function prediction only].
Length = 591
Score = 74.3 bits (183), Expect = 8e-14
Identities = 55/214 (25%), Positives = 90/214 (42%), Gaps = 42/214 (19%)
Query: 401 DFNNIRFSYPSRPDAVILNDLSLKIQSGSMTS-----VIGSSGSGKSTLAMLLLRLYDPQ 455
+ YP D L+++ G + ++G +G GK+T LL + P
Sbjct: 337 KARDTLVEYPDL--KKTYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPD 394
Query: 456 NGKILIDGVDIK-ELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDS---SSVTKSDI 511
G D+K P Y+ + GT+ + +L S SS K++I
Sbjct: 395 EGSE----EDLKVSYKPQYISPD----------YDGTVED-LLRSAIRSAFGSSYFKTEI 439
Query: 512 IHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSA 571
+ ++ + + V E LSGG+ QR+AIA AL +++ + LLDE ++
Sbjct: 440 VK--------PLNLE--DLLERPVDE----LSGGELQRVAIAAALSREADLYLLDEPSAY 485
Query: 572 LDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTI 603
LD E +V I + IE KT L + H + I
Sbjct: 486 LDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMI 519
Score = 49.6 bits (119), Expect = 4e-06
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Query: 542 LSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE-GKTVLTIAHRL 600
LSGG+ QR+AIA AL++ + + DE +S LD I +L E GK V+ + H L
Sbjct: 214 LSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDL 273
Query: 601 STIRK-SNQICVL 612
+ + S+ + +L
Sbjct: 274 AVLDYLSDFVHIL 286
>gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 272
Score = 71.8 bits (176), Expect = 9e-14
Identities = 65/243 (26%), Positives = 104/243 (42%), Gaps = 41/243 (16%)
Query: 411 SRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLL-RLYDPQ-------NGKILID 462
+R IL DLSL+I+ G +T+++G +G+GKSTL L L G + ++
Sbjct: 10 ARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLN 69
Query: 463 GVDIKELDPMYL---RSQIGSVSQEPTLFSGTIYENILYG------VNDSSSVTKSDIIH 513
G + +D L R+ + +Q FS E +L G + + +I
Sbjct: 70 GEPLAAIDAPRLARLRAVLPQAAQPAFAFS--AREIVLLGRYPHARRAGALTHRDGEIAW 127
Query: 514 AAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARAL---------IKKSKILL 564
A G +VG LSGG+ R+ AR L + + LL
Sbjct: 128 QALA----------LAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLL 177
Query: 565 LDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLS-TIRKSNQICVLDKGKIVEIG 621
LDE T+ALD +++ + + +L VL I H + R +++I +L G IV G
Sbjct: 178 LDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHG 237
Query: 622 SYA 624
+ A
Sbjct: 238 APA 240
>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system,
component A2. The enzyme that catalyzes the final step
in methanogenesis, methyl coenzyme M reductase, contains
alpha, beta, and gamma chains. In older literature, the
complex of alpha, beta, and gamma chains was termed
component C, while this single chain protein was termed
methyl coenzyme M reductase system component A2 [Energy
metabolism, Methanogenesis].
Length = 520
Score = 72.5 bits (178), Expect = 2e-13
Identities = 60/225 (26%), Positives = 118/225 (52%), Gaps = 35/225 (15%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILI----DGVDIKELDPMY 473
++++SL+++ G + ++G+SG+GK+TL+ ++ + +P +G++ + + VD+ + P
Sbjct: 300 VDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPD- 358
Query: 474 LRSQ----IGSVSQEPTLFS-GTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFK 528
R + IG + QE L+ T+ +N+ T++ + E VI K
Sbjct: 359 GRGRAKRYIGILHQEYDLYPHRTVLDNL----------TEAIGLELPDELARMKAVITLK 408
Query: 529 N-GFD-----TIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQS 582
GFD I+ + LS G++ R+A+A+ LIK+ +I++LDE T +D + V
Sbjct: 409 MVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTH 468
Query: 583 AIEKLIE--GKTVLTIAHRLSTIRKSNQIC----VLDKGKIVEIG 621
+I K E +T + ++H + + +C ++ GKIV+IG
Sbjct: 469 SILKAREEMEQTFIIVSHDMDFV---LDVCDRAALMRDGKIVKIG 510
Score = 61.7 bits (150), Expect = 6e-10
Identities = 32/101 (31%), Positives = 53/101 (52%), Gaps = 10/101 (9%)
Query: 542 LSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI--EGKTVLTIAHR 599
LSGG+KQR+ +AR L K+ + L DE T LD + LV +A+E+ + G +++ +H
Sbjct: 169 LSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHW 228
Query: 600 LSTIRK-SNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLMK 639
I S++ L+ G+I E G P+ + M+
Sbjct: 229 PEVIEDLSDKAIWLENGEIKEEG-------TPDEVVAVFME 262
Score = 39.4 bits (92), Expect = 0.006
Identities = 16/49 (32%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Query: 414 DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLL--LRLYDPQNGKIL 460
+L ++S I+ G + ++G SG+GKS L +L + Y+P +G+I+
Sbjct: 12 GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRII 60
>gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis
ATP-binding export protein. CcmA, the ATP-binding
component of the bacterial CcmAB transporter. The CCM
family is involved in bacterial cytochrome c biogenesis.
Cytochrome c maturation in E. coli requires the ccm
operon, which encodes eight membrane proteins
(CcmABCDEFGH). CcmE is a periplasmic heme chaperon that
binds heme covalently and transfers it onto
apocytochrome c in the presence of CcmF, CcmG, and CcmH.
The CcmAB proteins represent an ABC transporter and the
CcmCD proteins participate in heme transfer to CcmE.
Length = 201
Score = 68.7 bits (168), Expect = 3e-13
Identities = 53/194 (27%), Positives = 80/194 (41%), Gaps = 20/194 (10%)
Query: 411 SRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELD 470
R + + LS + +G V G +GSGK+TL +L L P G++L++G +
Sbjct: 9 ERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR 68
Query: 471 PMYLRS--QIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFK 528
R +G T S + EN+ + D S + A GF
Sbjct: 69 DSIARGLLYLGHAPGIKTTLS--VLENLRFWHADHSD---EQVEEALARVGLNGFE---- 119
Query: 529 NGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI 588
D V + LS GQ++R+A+AR L+ + +LDE T+ALD A+
Sbjct: 120 ---DRPVAQ----LSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHC 172
Query: 589 E--GKTVLTIAHRL 600
G VLT L
Sbjct: 173 ARGGMVVLTTHQDL 186
>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter,
ATP-binding subunit. This protein family is the
ATP-binding cassette subunit of binding
protein-dependent ABC transporter complex that strictly
co-occurs with TIGR03769. TIGRFAMs model TIGR03769
describes a protein domain that occurs singly or as one
of up to three repeats in proteins of a number of
Actinobacteria, including Propionibacterium acnes
KPA171202. The TIGR03769 domain occurs both in an
adjacent gene for the substrate-binding protein and in
additional (often nearby) proteins, often with
LPXTG-like sortase recognition signals. Homologous
ATP-binding subunits outside the scope of this family
include manganese transporter MntA in Synechocystis sp.
PCC 6803 and chelated iron transporter subunits. The
function of this transporter complex is unknown
[Transport and binding proteins, Unknown substrate].
Length = 223
Score = 69.1 bits (169), Expect = 3e-13
Identities = 59/220 (26%), Positives = 89/220 (40%), Gaps = 37/220 (16%)
Query: 423 LKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVS 482
L G + ++G +G+GK+TL +L L P G + + G P IG V
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGAS-----PGKGWRHIGYVP 55
Query: 483 QEPTL---FSGTIYENILYG------------VNDSSSVTKSDIIHAAKEANAYGFVIDF 527
Q F ++ ++ G V D ++V A +
Sbjct: 56 QRHEFAWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVR-----DALRRVGLTELA--- 107
Query: 528 KNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALD-AENEYLVQSAIEK 586
D VGE LSGGQ+QR+ +ARAL + +LLLDE + LD E L + IE
Sbjct: 108 ----DRPVGE----LSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIEL 159
Query: 587 LIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHL 626
G +L H L+ + VL G+++ G+ L
Sbjct: 160 AGAGTAILMTTHDLAQAMATCDRVVLLNGRVIADGTPQQL 199
>gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC. SufC is part of the SUF
system, shown in E. coli to consist of six proteins and
believed to act in Fe-S cluster formation during
oxidative stress. SufC forms a complex with SufB and
SufD. SufC belongs to the ATP-binding cassette
transporter family (pfam00005) but is no longer thought
to be part of a transporter. The complex is reported as
cytosolic (PMID:12554644) or associated with the
membrane (PMID:11943156). The SUF system also includes a
cysteine desulfurase (SufS, enhanced by SufE) and a
probable iron-sulfur cluster assembly scaffold protein,
SufA [Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 243
Score = 68.4 bits (168), Expect = 7e-13
Identities = 65/228 (28%), Positives = 103/228 (45%), Gaps = 38/228 (16%)
Query: 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLL--RLYDPQNGKILIDGVDIKELDPMYL 474
IL ++L ++ G + +++G +GSGKSTL+ + Y+ +G IL G D+ EL+P
Sbjct: 15 ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEP-DE 73
Query: 475 RSQIGSVSQEPTLFSGTIY-ENILYGVNDSSSVTKSDIIHAAKEA----------NAYGF 523
R++ G LF Y E I V+ + + +A A + F
Sbjct: 74 RARAG-------LFLAFQYPEEI-------PGVSNLEFLRSALNARRSARGEEPLDLLDF 119
Query: 524 VIDFKN-----GFDTIVGERGIM--LSGGQKQRIAIARALIKKSKILLLDEATSALDAEN 576
+ K G D R + SGG+K+R I + + + K+ +LDE S LD +
Sbjct: 120 LKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDA 179
Query: 577 EYLVQSAIEKLIEGKT-VLTIAH--RLSTIRKSNQICVLDKGKIVEIG 621
+V I +L E L I H RL K + + VL G+IV+ G
Sbjct: 180 LKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSG 227
>gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding
cassette component of monosaccharide transport system.
This family represents domain II of the carbohydrate
uptake proteins that transport only monosaccharides
(Monos). The Carb_Monos family is involved in the uptake
of monosaccharides, such as pentoses (such as xylose,
arabinose, and ribose) and hexoses (such as xylose,
arabinose, and ribose), that cannot be broken down to
simple sugars by hydrolysis. In members of Carb_Monos
family the single hydrophobic gene product forms a
homodimer, while the ABC protein represents a fusion of
two nucleotide-binding domains. However, it is assumed
that two copies of the ABC domains are present in the
assembled transporter.
Length = 182
Score = 66.7 bits (164), Expect = 1e-12
Identities = 51/218 (23%), Positives = 89/218 (40%), Gaps = 57/218 (26%)
Query: 411 SRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELD 470
S AV D+S ++++G + + G G+G++ LA L L P +G+I +DG +
Sbjct: 11 SVKGAV--RDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRS 68
Query: 471 PMYLRSQ-IGSVSQEPT---LFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVI 525
P I V ++ L ++ ENI
Sbjct: 69 PRDAIRAGIAYVPEDRKREGLVLDLSVAENIALS-------------------------- 102
Query: 526 DFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIE 585
+LSGG +Q++ +AR L + ++L+LDE T +D + + I
Sbjct: 103 --------------SLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIR 148
Query: 586 KLI-EGKTVLTIAHRLST-----IRKSNQICVLDKGKI 617
+L GK VL I S+ + ++I V+ +G+I
Sbjct: 149 ELADAGKAVLLI----SSELDELLGLCDRILVMYEGRI 182
>gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 204
Score = 66.0 bits (162), Expect = 3e-12
Identities = 39/180 (21%), Positives = 73/180 (40%), Gaps = 41/180 (22%)
Query: 411 SRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELD 470
R + ++ + LS + +G + + G +G+GK++L +L L P G++L G I+
Sbjct: 10 ERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR 69
Query: 471 PMYLRSQIGSVSQEPTLFSG---------TIYENILYGVNDSSSVTKSDIIHAAKEANAY 521
Y + L+ G T EN+ + + + A
Sbjct: 70 DEYHQD---------LLYLGHQPGIKTELTALENLRFYQRLHGPGD-DEALWEALAQ--- 116
Query: 522 GFVIDFKNGFDTIVGERGIM------LSGGQKQRIAIARALIKKSKILLLDEATSALDAE 575
VG G LS GQ++R+A+AR + ++ + +LDE +A+D +
Sbjct: 117 -------------VGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQ 163
>gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT)
Family protei. [Transport and binding proteins,
Carbohydrates, organic alcohols, and acids].
Length = 659
Score = 69.0 bits (169), Expect = 4e-12
Identities = 57/216 (26%), Positives = 100/216 (46%), Gaps = 35/216 (16%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
I F NI P+ V++ LS ++ SG+ + G +G GKS+L +L L+ G++
Sbjct: 452 IKFENIPLVTPN--GDVLIESLSFEVPSGNNLLICGPNGCGKSSLFRILGELWPVYGGRL 509
Query: 460 LIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILY----------GVNDSSSVTKS 509
+ ++ V Q P + GT+ + I+Y G++D
Sbjct: 510 TKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMKRRGLSDKDLEQIL 558
Query: 510 DIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEAT 569
D + +++ + G+ V + +LSGG+KQRIA+AR K + +LDE T
Sbjct: 559 DNVQ-------LTHILEREGGWS-AVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECT 610
Query: 570 SALDAENE-YLVQSAIEKLIEGKTVLTIAHRLSTIR 604
SA+ + E Y+ + E I T+ +++HR S +
Sbjct: 611 SAVSVDVEGYMYRLCREFGI---TLFSVSHRKSLWK 643
>gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding
subunit; Provisional.
Length = 356
Score = 67.6 bits (166), Expect = 4e-12
Identities = 73/264 (27%), Positives = 116/264 (43%), Gaps = 66/264 (25%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLR----LYDPQ 455
+ +R SY + + + L + G ++G SG GKSTL LR L
Sbjct: 4 LKLQAVRKSYDGKTQVI--KGIDLDVADGEFIVLVGPSGCGKSTL----LRMVAGLERIT 57
Query: 456 NGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDI--- 511
+G+I I G + EL+P R I V Q L+ ++ EN+ YG+ + K++I
Sbjct: 58 SGEIWIGGRVVNELEPA-DRD-IAMVFQNYALYPHMSVRENMAYGLKIRG-MPKAEIEER 114
Query: 512 -IHAAK--EANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEA 568
AA+ E +D K R LSGGQ+QR+A+ RA++++ + L DE
Sbjct: 115 VAEAARILELEPL---LDRK--------PR--ELSGGQRQRVAMGRAIVREPAVFLFDEP 161
Query: 569 TSALDAENEYL-VQSAIE--KL---------------IEGKTVLTIAHRLSTIRKSNQIC 610
S LDA+ L VQ +E +L +E +T+A R+
Sbjct: 162 LSNLDAK---LRVQMRLEIQRLHRRLKTTSLYVTHDQVEA---MTLADRV---------V 206
Query: 611 VLDKGKIVEIGSYAHLIKNPNSMF 634
V++ G +IG+ + + P S F
Sbjct: 207 VMNGGVAEQIGTPVEVYEKPASTF 230
>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC
transporter ATP-binding subunit GldA. Members of this
protein family are exclusive to the Bacteroidetes phylum
(previously Cytophaga-Flavobacteria-Bacteroides). GldA
is an ABC transporter ATP-binding protein (pfam00005)
linked to a type of rapid surface gliding motility found
in certain Bacteroidetes, such as Flavobacterium
johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA
abolish the gliding phenotype. Gliding motility appears
closely linked to chitin utilization in the model
species Flavobacterium johnsoniae. Bacteroidetes with
members of this protein family appear to have all of the
genes associated with gliding motility.
Length = 301
Score = 66.7 bits (163), Expect = 5e-12
Identities = 53/222 (23%), Positives = 102/222 (45%), Gaps = 33/222 (14%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQ 477
L+++S + Q G + +G +G+GKST ++ P +G + + G D+ + +P ++
Sbjct: 18 LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRN 76
Query: 478 IGSVSQEPTL-----------FSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVID 526
IG + + L F IY G+ K + + G +
Sbjct: 77 IGYLPEHNPLYLDMYVREYLQFIAGIY-----GMKGQL--LKQRV---EEMIELVGLRPE 126
Query: 527 -FKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIE 585
K +G+ LS G +QR+ +A+ALI K+L+LDE T+ LD +++ I+
Sbjct: 127 QHKK-----IGQ----LSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIK 177
Query: 586 KLIEGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHL 626
+ + KT++ H + + +++ +++KGKIV L
Sbjct: 178 NIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDEL 219
>gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional.
Length = 659
Score = 68.4 bits (167), Expect = 5e-12
Identities = 66/216 (30%), Positives = 112/216 (51%), Gaps = 20/216 (9%)
Query: 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQN--GKILIDGVDIKELDPMYL 474
ILN ++ G + +V+G SGSGKSTL L N G IL + ++ L
Sbjct: 83 ILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANN---RKPTKQIL 139
Query: 475 RSQIGSVSQEPTLFSG-TIYENILYG--VNDSSSVTKSDIIHAAKEANAYGFVIDFKNGF 531
+ + G V+Q+ L+ T+ E +++ + S+TK + I A+ + + +N
Sbjct: 140 K-RTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCEN-- 196
Query: 532 DTIVGE---RGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEY-LVQSAIEKL 587
TI+G RGI SGG+++R++IA ++ +L+LDE TS LDA Y LV +
Sbjct: 197 -TIIGNSFIRGI--SGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLA 253
Query: 588 IEGKTVLTIAHRLST--IRKSNQICVLDKGKIVEIG 621
+GKT++T H+ S+ + + + VL +G+ + G
Sbjct: 254 QKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFG 289
>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein.
Several bacterial species have enzymes xylose isomerase
and xylulokinase enzymes for xylose utilization. Members
of this protein family are the ATP-binding cassette
(ABC) subunit of the known or predicted high-affinity
xylose ABC transporter for xylose import. These genes,
which closely resemble other sugar transport ABC
transporter genes, typically are encoded near xylose
utilization enzymes and regulatory proteins. Note that
this form of the transporter contains two copies of the
ABC transporter domain (pfam00005) [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 500
Score = 67.5 bits (165), Expect = 9e-12
Identities = 59/214 (27%), Positives = 103/214 (48%), Gaps = 23/214 (10%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQ---NGKILIDGVDIKELDPMYL 474
L+ + L+++ G + G +G+GKSTL +L +Y P +G+I G +K +
Sbjct: 17 LDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVY-PHGTWDGEIYWSGSPLKASNIRDT 75
Query: 475 -RSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKN--- 529
R+ I + QE TL ++ ENI G ++I + KN
Sbjct: 76 ERAGIVIIHQELTLVPELSVAENIFLG---------NEITLPGGRMAYNAMYLRAKNLLR 126
Query: 530 --GFDTIVGERGIM-LSGGQKQRIAIARALIKKSKILLLDEATSAL-DAENEYLVQSAIE 585
D R + GGQ+Q + IA+AL K++++L+LDE +S+L + E E L+ +
Sbjct: 127 ELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRD 186
Query: 586 KLIEGKTVLTIAHRLSTIRK-SNQICVLDKGKIV 618
G + I+H+L+ ++ + ICV+ G+ V
Sbjct: 187 LKAHGVACVYISHKLNEVKAVCDTICVIRDGQHV 220
Score = 51.0 bits (122), Expect = 1e-06
Identities = 59/241 (24%), Positives = 106/241 (43%), Gaps = 27/241 (11%)
Query: 394 HSLKGEI-DFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLY 452
H + I + N+ P ++D+S ++ G + V G G+G++ L L Y
Sbjct: 251 HEIGDVILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAY 310
Query: 453 DPQ-NGKILIDGVDIKELDPM-YLRSQIGSVSQE-------PTLFSGTIYENILYGVNDS 503
+ G + I+G + +P +R+ I V ++ P L G +NI V S
Sbjct: 311 PGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVG---KNITLSVLKS 367
Query: 504 SSVTKSDIIHAAKEANAYGFVID-----FKNGFDTIVGERGIMLSGGQKQRIAIARALIK 558
I AA E G I + F I LSGG +Q+ +A+ L+
Sbjct: 368 --FCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGR-----LSGGNQQKAVLAKMLLT 420
Query: 559 KSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIRK-SNQICVLDKGK 616
++L+LDE T +D +Y + I +L EG ++ ++ L+ + S+++ V+ +GK
Sbjct: 421 NPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGK 480
Query: 617 I 617
+
Sbjct: 481 L 481
>gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated.
Length = 252
Score = 65.0 bits (159), Expect = 1e-11
Identities = 63/231 (27%), Positives = 105/231 (45%), Gaps = 42/231 (18%)
Query: 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLL--RLYDPQNGKILIDGVDIKELDPMYL 474
IL L+L I G + +++G +GSGKSTL+ ++ Y G IL G I +L+P
Sbjct: 22 ILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPE-E 80
Query: 475 RSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAA----------KEANAYGF- 523
R+ +G +F Y + GV++ +D + A E + F
Sbjct: 81 RAHLG-------IFLAFQYPIEIPGVSN------ADFLRLAYNSKRKFQGLPELDPLEFL 127
Query: 524 -VIDFKNGFDTIVGERGIML--------SGGQKQRIAIARALIKKSKILLLDEATSALDA 574
+I+ K +VG L SGG+K+R I + + S++ +LDE S LD
Sbjct: 128 EIINEKL---KLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDI 184
Query: 575 ENEYLVQSAIEKLI-EGKTVLTIAH--RLSTIRKSNQICVLDKGKIVEIGS 622
+ ++ I KL+ +++ I H RL K + + V+ GKI++ G
Sbjct: 185 DALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGD 235
>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein;
Provisional.
Length = 272
Score = 64.9 bits (158), Expect = 1e-11
Identities = 60/209 (28%), Positives = 105/209 (50%), Gaps = 13/209 (6%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQ 477
L D S + GS+ +++G +GSGKSTL L+ +GKI I G ++ L +
Sbjct: 23 LRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAY 82
Query: 478 IGSVSQEPTLFSGTIYENIL----YGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDT 533
+ S+E + E+++ YG K A A +++F++
Sbjct: 83 VPQ-SEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRH---R 138
Query: 534 IVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKL-IEGKT 592
+GE LSGGQK+R+ +ARA+ ++ +++LLDE + +D + E + S + +L EGKT
Sbjct: 139 QIGE----LSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKT 194
Query: 593 VLTIAHRLSTIRKSNQICVLDKGKIVEIG 621
+L H L ++ + V+ KG ++ G
Sbjct: 195 MLVSTHNLGSVTEFCDYTVMVKGTVLASG 223
>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein
YbbA; Provisional.
Length = 228
Score = 62.9 bits (153), Expect = 4e-11
Identities = 53/174 (30%), Positives = 79/174 (45%), Gaps = 37/174 (21%)
Query: 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDP---MY 473
IL + L ++ G ++IG SGSGKSTL +L L D +G++ + G + ++D
Sbjct: 25 ILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAK 84
Query: 474 LRSQ-IGSVSQE----PTLFSGTIYENI-----LYGVNDSSSVTKSDIIHAAKEANAYGF 523
LR++ +G V Q PTL EN+ L G + S A G
Sbjct: 85 LRAKHVGFVFQSFMLIPTL---NALENVELPALLRGESSRQSRN-----GAKALLEQLG- 135
Query: 524 VIDFKNGFDTIVGER----GIMLSGGQKQRIAIARALIKKSKILLLDEATSALD 573
+G+R LSGG++QR+A+ARA + +L DE T LD
Sbjct: 136 -----------LGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLD 178
>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family
protein. [Transport and binding proteins, Other].
Length = 1394
Score = 65.9 bits (161), Expect = 5e-11
Identities = 63/205 (30%), Positives = 106/205 (51%), Gaps = 29/205 (14%)
Query: 414 DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDG---VDIKELD 470
VILN++ ++ G++T+++G+SG+GK+T LL L + ++ G V+ + LD
Sbjct: 775 KRVILNNVDGWVKPGTLTALMGASGAGKTT---LLNVLAERVTTGVITGGDRLVNGRPLD 831
Query: 471 PMYLRSQIGSVSQE----PTLFSGTIYENILYG--VNDSSSVTKSDIIHAAKEANAY-GF 523
+ RS IG V Q+ PT T+ E++ + + SV+K E Y
Sbjct: 832 SSFQRS-IGYVQQQDLHLPTS---TVRESLRFSAYLRQPKSVSK-------SEKMEYVEE 880
Query: 524 VIDF---KNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILL-LDEATSALDAENEYL 579
VI ++ D +VG G L+ Q++R+ I L+ K K+LL LDE TS LD++ +
Sbjct: 881 VIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWS 940
Query: 580 VQSAIEKLIE-GKTVLTIAHRLSTI 603
+ + KL + G+ +L H+ S I
Sbjct: 941 ICKLMRKLADHGQAILCTIHQPSAI 965
Score = 61.7 bits (150), Expect = 9e-10
Identities = 57/232 (24%), Positives = 93/232 (40%), Gaps = 33/232 (14%)
Query: 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTL----AMLLLRLYDPQNGKILIDGVDIKELDPM 472
IL + I+ G +T V+G GSG STL A + G I DG+ +E+
Sbjct: 76 ILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKH 135
Query: 473 YLRSQIGSVSQEPTLFSGTIYENILYGV------NDSSSVTKSDIIHAAKEANAYGFVID 526
Y + + + T+ E + + N V++ + +A A+ Y
Sbjct: 136 YRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREE--YAKHIADVYMATYG 193
Query: 527 FKNGFDTIVGE---RGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSA 583
+ +T VG RG+ SGG+++R++IA A + +KI D AT LD+ A
Sbjct: 194 LSHTRNTKVGNDFVRGV--SGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRA 251
Query: 584 IEKLIEGKTVLTIAHR--LSTIRKSNQ--------ICVLDKGKIVEIGSYAH 625
+ KT I L I + +Q + VL +G + G
Sbjct: 252 L------KTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADK 297
>gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 255
Score = 63.1 bits (154), Expect = 6e-11
Identities = 61/228 (26%), Positives = 110/228 (48%), Gaps = 20/228 (8%)
Query: 419 NDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQI 478
N+++L+++ + S+IG +G+GK+T+ L Y P G IL+ G I+ L P + +++
Sbjct: 22 NNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGL-PGHQIARM 80
Query: 479 GSVS--QEPTLF-SGTIYENILYGVNDSSSVTKSDIIH----------AAKEANAYGFVI 525
G V Q LF T+ EN+L V + K+ + A EA
Sbjct: 81 GVVRTFQHVRLFREMTVIENLL--VAQHQQL-KTGLFSGLLKTPAFRRAESEALDRAATW 137
Query: 526 DFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIE 585
+ G + L+ GQ++R+ IAR ++ + +IL+LDE + L+ + + I
Sbjct: 138 LERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIA 197
Query: 586 KLIE--GKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLIKNP 630
+L TVL I H + + S++I V+++G + G+ + NP
Sbjct: 198 ELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEEIRNNP 245
>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter
ATP-binding protein; Provisional.
Length = 491
Score = 64.4 bits (157), Expect = 7e-11
Identities = 65/222 (29%), Positives = 108/222 (48%), Gaps = 29/222 (13%)
Query: 411 SRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDI---- 466
S P L++++LK++ S+ +++G +G+GKSTL L +Y +G IL G +I
Sbjct: 7 SFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKS 66
Query: 467 -KELDPMYLRSQIGSVSQEPTLF-SGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFV 524
KE L + I V QE L ++ +N+ G TK + K
Sbjct: 67 SKEA----LENGISMVHQELNLVLQRSVMDNMWLG----RYPTKGMFVDQDKMYR----- 113
Query: 525 IDFKNGFDTI-----VGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSAL-DAENEY 578
D K FD + + LS Q Q I IA+A +KI+++DE TS+L + E +
Sbjct: 114 -DTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNH 172
Query: 579 LVQSAIEKLIE-GKTVLTIAHRLSTIRK-SNQICVLDKGKIV 618
L + I KL E G ++ I+H++ I + ++I +L G+ +
Sbjct: 173 LF-TIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWI 213
Score = 41.3 bits (97), Expect = 0.001
Identities = 47/215 (21%), Positives = 95/215 (44%), Gaps = 18/215 (8%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPM-YLRS 476
+ D+S + G + + G G+ ++ + L + + G I + G I + +
Sbjct: 264 IRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINH 323
Query: 477 QIGSVSQEPTLFSGTIYENILYGVND-----SSSVTKSDIIHAAKEANAYGFVIDFKN-- 529
V++E S IY + G N + K ++ ++ + +VID
Sbjct: 324 GFALVTEERR--STGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVK 381
Query: 530 --GFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKL 587
G T +G LSGG +Q++ I R L+ + +IL+LDE T +D ++ + I +L
Sbjct: 382 TPGHRTQIGS----LSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAEL 437
Query: 588 I-EGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEI 620
+ K ++ I+ + + +++I V+ G + I
Sbjct: 438 AKKDKGIIIISSEMPELLGITDRILVMSNGLVAGI 472
>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family.
Members of this protein family have two copies of the
ABC transporter ATP-binding cassette, but are found
outside the common ABC transporter operon structure that
features integral membrane permease proteins and
substrate-binding proteins encoded next to the
ATP-binding cassette (ABC domain) protein. The member
protein ChvD from Agrobacterium tumefaciens was
identified as both a candidate to interact with VirB8,
based on yeast two-hybrid analysis, and as an apparent
regulator of VirG. The general function of this protein
family is unknown.
Length = 552
Score = 64.6 bits (158), Expect = 9e-11
Identities = 60/208 (28%), Positives = 92/208 (44%), Gaps = 55/208 (26%)
Query: 403 NNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILID 462
N + P P IL D+SL G+ V+G +G+GKSTL LR+ +
Sbjct: 8 NRVSKVVP--PKKEILKDISLSFFPGAKIGVLGLNGAGKSTL----LRI---------MA 52
Query: 463 GVDIKELDPMYLRSQ---IGSVSQEPTL-FSGTIYENILYGVND-SSSVTKSDIIHA--- 514
GVD KE + + +G + QEP L + T+ EN+ GV + ++ + + I A
Sbjct: 53 GVD-KEFNGEARPAPGIKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFA 111
Query: 515 ---------AKEANAYGFVIDFKNGF------------------DTIVGERGIMLSGGQK 547
E +ID + + D V + LSGG++
Sbjct: 112 EPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTK----LSGGER 167
Query: 548 QRIAIARALIKKSKILLLDEATSALDAE 575
+R+A+ R L+ K +LLLDE T+ LDAE
Sbjct: 168 RRVALCRLLLSKPDMLLLDEPTNHLDAE 195
Score = 62.6 bits (153), Expect = 3e-10
Identities = 59/212 (27%), Positives = 103/212 (48%), Gaps = 35/212 (16%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
I+ N+ + + ++++DLS K+ G + VIG +G+GKSTL ++ P +G I
Sbjct: 323 IEAENLSKGFGDK---LLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTI 379
Query: 460 LI-DGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEA 518
I + V + +D R + +P + T++E I G D + K ++ +
Sbjct: 380 KIGETVKLAYVDQS--RDAL-----DP---NKTVWEEISGG-LDIIQLGKREV-----PS 423
Query: 519 NAYGFVIDFKNGFD--TIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAEN 576
AY +FK G D VG+ LSGG++ R+ +A+ L +LLLDE T+ LD E
Sbjct: 424 RAYVGRFNFK-GSDQQKKVGQ----LSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVET 478
Query: 577 EYLVQSAIEKLIEGKTVLTIAH------RLST 602
++ A+ + + I+H R++T
Sbjct: 479 LRALEEALLEF--AGCAVVISHDRWFLDRIAT 508
>gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein;
Provisional.
Length = 501
Score = 64.3 bits (157), Expect = 9e-11
Identities = 63/198 (31%), Positives = 101/198 (51%), Gaps = 14/198 (7%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQ 477
L+ +L + G + +++G +G+GKST+ +L +Y G IL G ++ P SQ
Sbjct: 20 LSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPK--SSQ 77
Query: 478 ---IGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDT 533
IG + QE L TI ENI G + + D EA+ ++ + D
Sbjct: 78 EAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDK 137
Query: 534 IVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSAL-DAENEYLVQSAIEKLIEGKT 592
+VGE LS G++Q + IA+ L +SK++++DE T AL D E E L + E +G+
Sbjct: 138 LVGE----LSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRG 193
Query: 593 VLTIAHRLSTIRKSNQIC 610
++ I+HRL I +IC
Sbjct: 194 IVYISHRLKEIF---EIC 208
Score = 46.5 bits (111), Expect = 3e-05
Identities = 48/169 (28%), Positives = 82/169 (48%), Gaps = 22/169 (13%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMY-LRS 476
+ND+S ++ G + V G G+G++ L +L +G + +DG ++ P L +
Sbjct: 268 VNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLAN 327
Query: 477 QIGSVSQEPT---LFSG-TIYENI-LYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGF 531
I +S++ L G ++ EN+ L + S + A E A V DF F
Sbjct: 328 GIVYISEDRKRDGLVLGMSVKENMSLTALRYFSR--AGGSLKHADEQQA---VSDFIRLF 382
Query: 532 -------DTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALD 573
+ +G +LSGG +Q++AIAR L+ + K+L+LDE T +D
Sbjct: 383 NIKTPSMEQAIG----LLSGGNQQKVAIARGLMTRPKVLILDEPTRGVD 427
>gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 237
Score = 61.8 bits (150), Expect = 1e-10
Identities = 57/216 (26%), Positives = 103/216 (47%), Gaps = 13/216 (6%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELD-PMYLRS 476
L+++SL I G + ++IG++G+GK+TL L +G+I+ DG DI + +R
Sbjct: 21 LHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMRE 80
Query: 477 QIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIV 535
+ V + +FS T+ EN+ G + Y F + +
Sbjct: 81 AVAIVPEGRRVFSRMTVEENLAMG-----GFFAERDQFQERIKWVYEL---FPRLHERRI 132
Query: 536 GERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKL-IEGKTVL 594
G M SGG++Q +AI RAL+ + ++LLLDE + L + IE+L +G T+
Sbjct: 133 QRAGTM-SGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIF 191
Query: 595 TIAHRLS-TIRKSNQICVLDKGKIVEIGSYAHLIKN 629
+ + ++ +++ VL+ G +V + L+ N
Sbjct: 192 LVEQNANQALKLADRGYVLENGHVVLEDTGDALLAN 227
>gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein
YrbF; Provisional.
Length = 269
Score = 62.1 bits (151), Expect = 1e-10
Identities = 49/182 (26%), Positives = 90/182 (49%), Gaps = 34/182 (18%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
+D + F+ R + I +++SL + G +T+++G SG GK+TL L+ P +G+I
Sbjct: 8 VDMRGVSFT---RGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEI 64
Query: 460 LIDGVDIKELDPMYL---RSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAA 515
L DG +I + L R ++ + Q LF+ +++N+ Y + + + + ++H+
Sbjct: 65 LFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAP-LLHST 123
Query: 516 K----EANAYGFVIDFKNGFDTIVGERG---IM---LSGGQKQRIAIARALIKKSKILLL 565
EA VG RG +M LSGG +R A+ARA+ + +++
Sbjct: 124 VMMKLEA----------------VGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMF 167
Query: 566 DE 567
DE
Sbjct: 168 DE 169
>gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase
component [Coenzyme metabolism].
Length = 248
Score = 61.4 bits (149), Expect = 2e-10
Identities = 54/229 (23%), Positives = 106/229 (46%), Gaps = 34/229 (14%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQ 477
L LS ++++G + ++G +G+GKSTL + + +G I G ++ L
Sbjct: 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARH 73
Query: 478 IGSVSQEPT-LFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVG 536
+SQ+ T F+ ++ + D + + + A A +D K G
Sbjct: 74 RAYLSQQQTPPFAMPVWHYLTLHQPDKTRTELLNDV-----AGALA--LDDKLG------ 120
Query: 537 ERGI-MLSGGQKQRIAIARALIK-------KSKILLLDEATSALDAENEYLVQSAIEKLI 588
R LSGG+ QR+ +A +++ ++LLLDE ++LD QSA+++L+
Sbjct: 121 -RSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQ----QSALDRLL 175
Query: 589 E-----GKTVLTIAHRLS-TIRKSNQICVLDKGKIVEIGSYAHLIKNPN 631
G ++ +H L+ T+R +++ +L +GK++ G ++ P
Sbjct: 176 SALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLTPPV 224
>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding
protein ModF; Provisional.
Length = 490
Score = 62.7 bits (153), Expect = 3e-10
Identities = 75/238 (31%), Positives = 103/238 (43%), Gaps = 56/238 (23%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLL----------- 448
I NN SY RP IL++LS ++ G ++G +G+GKSTL L+
Sbjct: 261 IVLNNGVVSYNDRP---ILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSND 317
Query: 449 LRLYDPQNGK---ILIDGVDIKELDPMYLRSQIGSVSQEPTL---FSGTIYENILYGVND 502
L L+ + G I DIK IG VS L S ++ IL G D
Sbjct: 318 LTLFGRRRGSGETIW----DIK--------KHIGYVSSSLHLDYRVSTSVRNVILSGFFD 365
Query: 503 SSSVTK--SDIIHAAKEANAYGFVIDFKNGFDTIVGERGIM-LSGGQKQRIA-IARALIK 558
S + + SD K A + ++ G D + LS GQ QR+A I RAL+K
Sbjct: 366 SIGIYQAVSDRQQ--KLAQQWLDIL----GIDKRTADAPFHSLSWGQ-QRLALIVRALVK 418
Query: 559 KSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVL------------TIAHRLSTI 603
+L+LDE LD N LV+ ++ LI EG+T L I HRL +
Sbjct: 419 HPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFV 476
Score = 40.8 bits (96), Expect = 0.002
Identities = 48/205 (23%), Positives = 82/205 (40%), Gaps = 15/205 (7%)
Query: 422 SLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSV 481
SL + +G + +G++GSGKS LA L L+ G E + S
Sbjct: 23 SLTLNAGDSWAFVGANGSGKSALARAL------AGELPLLSG----ERQSQFSHITRLSF 72
Query: 482 SQEPTLFSGTIYEN---ILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGER 538
Q L S N +L D + T ++II + A + + G ++ R
Sbjct: 73 EQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRR 132
Query: 539 GIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIA 597
LS G+ ++ + +AL+ + +L+LDE LD + + + L G T++ +
Sbjct: 133 FKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVL 192
Query: 598 HRLSTIRK-SNQICVLDKGKIVEIG 621
+R I VL + E G
Sbjct: 193 NRFDEIPDFVQFAGVLADCTLAETG 217
>gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein;
Reviewed.
Length = 556
Score = 62.1 bits (152), Expect = 5e-10
Identities = 61/219 (27%), Positives = 90/219 (41%), Gaps = 77/219 (35%)
Query: 403 NNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILID 462
N + P P IL D+SL G+ V+G +G+GKSTL LR+ +
Sbjct: 10 NRVSKVVP--PKKQILKDISLSFFPGAKIGVLGLNGAGKSTL----LRI---------MA 54
Query: 463 GVDIKE------LDPMYLRSQIGSVSQEPTL-FSGTIYENILYGVNDSSSVTKSDIIHAA 515
GVD KE P ++G + QEP L T+ EN+ GV +++ A
Sbjct: 55 GVD-KEFEGEARPAPGI---KVGYLPQEPQLDPEKTVRENVEEGV--------AEVKAAL 102
Query: 516 KE----ANAYGF-----------------VIDFKNGF------------------DTIVG 536
AY +ID + + D V
Sbjct: 103 DRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKVT 162
Query: 537 ERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAE 575
+ LSGG+++R+A+ R L++K +LLLDE T+ LDAE
Sbjct: 163 K----LSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAE 197
Score = 59.7 bits (146), Expect = 3e-09
Identities = 55/187 (29%), Positives = 89/187 (47%), Gaps = 43/187 (22%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
I+ N+ S+ R ++++DLS + G + +IG +G+GKSTL ++ P +G I
Sbjct: 325 IEAENLSKSFGDR---LLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTI 381
Query: 460 LI-DGVDIKELDPMYLRSQIGSVSQ-----EPTLFSGTIYENILYGVNDSSSVTKSDIIH 513
I + V ++ V Q +P + T++E I G DII
Sbjct: 382 KIGETV------------KLAYVDQSRDALDP---NKTVWEEISGG---------LDIIK 417
Query: 514 AAK-EANAYGFV--IDFKNGFDT--IVGERGIMLSGGQKQRIAIARALIKKSKILLLDEA 568
E + +V +FK G D VG +LSGG++ R+ +A+ L + +LLLDE
Sbjct: 418 VGNREIPSRAYVGRFNFK-GGDQQKKVG----VLSGGERNRLHLAKTLKQGGNVLLLDEP 472
Query: 569 TSALDAE 575
T+ LD E
Sbjct: 473 TNDLDVE 479
>gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK.
Members of this family are the PhnK protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated complex. This protein (PhnK) and the
adjacent-encoded PhnL resemble transporter ATP-binding
proteins but are suggested, based on mutatgenesis
studies, to be part of this complex rather than part of
a transporter per se [Central intermediary metabolism,
Phosphorus compounds].
Length = 253
Score = 59.8 bits (145), Expect = 7e-10
Identities = 58/237 (24%), Positives = 101/237 (42%), Gaps = 25/237 (10%)
Query: 419 NDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYL---- 474
D+S + G + ++G SGSGKSTL L P +G EL+ L
Sbjct: 20 RDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAE 79
Query: 475 -----RSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAK-EANAYGFVIDFK 528
R++ G V Q P + + G N + H A A ++ + +
Sbjct: 80 RRRLMRTEWGFVHQNP---RDGLRMRVSAGANIGERLMAIGARHYGNIRATAQDWLEEVE 136
Query: 529 NGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI 588
I + SGG +QR+ IAR L+ + +++ +DE T LD VQ+ + L+
Sbjct: 137 IDPTRI-DDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVS----VQARLLDLL 191
Query: 589 EGK------TVLTIAHRLSTIR-KSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLM 638
G V+ + H L R + ++ V+ +G++VE G ++ +P + +L+
Sbjct: 192 RGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQVLDDPQHPYTQLL 248
>gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 258
Score = 59.4 bits (144), Expect = 8e-10
Identities = 66/280 (23%), Positives = 117/280 (41%), Gaps = 48/280 (17%)
Query: 378 MEREPLISTSGGKFFSHSLKGEIDFNNIRFS-YPSRPDAVILNDLSLKIQSGSMTSVIGS 436
M +PL+S SG S ++ F YP G + ++G
Sbjct: 1 MMDKPLLSVSG---LSKLYGPGKGCRDVSFDLYP-----------------GEVLGIVGE 40
Query: 437 SGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMY----------LRSQIGSVSQEPT 486
SGSGK+TL + P G + D + D +Y LR++ G V Q P
Sbjct: 41 SGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRD-LYTMSEAERRRLLRTEWGFVHQNP- 98
Query: 487 LFSGTIYENILYGVNDSSSVTKSDIIHAAK-EANAYGFVIDFKNGFDTIVGERGIMLSGG 545
+ + G N + H A A ++ + + D I + SGG
Sbjct: 99 --RDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRI-DDLPRTFSGG 155
Query: 546 QKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEG------KTVLTIAHR 599
+QR+ IAR L+ + +++ +DE T LD VQ+ + L+ G V+ + H
Sbjct: 156 MQQRLQIARNLVTRPRLVFMDEPTGGLDVS----VQARLLDLLRGLVRELGLAVVIVTHD 211
Query: 600 LSTIR-KSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLM 638
L+ R ++++ V+ +G++VE G ++ +P+ + +L+
Sbjct: 212 LAVARLLADRLMVMKQGQVVESGLTDRVLDDPHHPYTQLL 251
>gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted
acetyltransferase domain [General function prediction
only].
Length = 593
Score = 61.4 bits (149), Expect = 9e-10
Identities = 52/205 (25%), Positives = 86/205 (41%), Gaps = 55/205 (26%)
Query: 416 VILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLR--------LYDPQNGKILIDGVDIK 467
+L +L+L+I+ G + +V+G SG+GK+TL ++L Y P +GK+ + +
Sbjct: 397 YVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVS 456
Query: 468 ELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDF 527
L P + G V+ L S T D+ +AA E
Sbjct: 457 ALIPGEYEPEFGEVTILEHLRSKT-----------------GDL-NAAVE---------- 488
Query: 528 KNGFDTIVGERGIM-----------LSGGQKQRIAIARALIKKSKILLLDEATSALDAEN 576
I+ G+ LS GQK+R +A+ L ++ +LL+DE + LD
Sbjct: 489 ------ILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELT 542
Query: 577 EYLVQSAIEKLIE--GKTVLTIAHR 599
V I +L G T++ + HR
Sbjct: 543 AVRVARKISELAREAGITLIVVTHR 567
>gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 195
Score = 58.0 bits (140), Expect = 1e-09
Identities = 58/215 (26%), Positives = 100/215 (46%), Gaps = 22/215 (10%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
+ + ++F+ + L DLS+ ++T + G++G GKS+L ++ + P +G I
Sbjct: 2 LSLHQLQFNIEQK----NLFDLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNI 57
Query: 460 LIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEAN 519
+I + Y + IG T++EN+ + +S ++AA
Sbjct: 58 YYKNCNINNIAKPYC-TYIGH--NLGLKLEMTVFENLKFWSEIYNSAE---TLYAA---- 107
Query: 520 AYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYL 579
+ FK ++ E+ LS G ++ +AIAR + +S + LLDE + L EN L
Sbjct: 108 ----IHYFK--LHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDL 161
Query: 580 VQSAIE-KLIEGKTVLTIAHRLSTIRKSNQICVLD 613
+ + I K G VL +H S+I KS QI LD
Sbjct: 162 LNNLIVMKANSGGIVLLSSHLESSI-KSAQILQLD 195
>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter. This
model describes the photoreceptor protein (rim protein)
in eukaryotes. It is the member of ABC transporter
superfamily. Rim protein is a membrane glycoprotein which
is localized in the photoreceptor outer segment discs.
Mutation/s in its genetic loci is implicated in the
recessive Stargardt's disease [Transport and binding
proteins, Other].
Length = 2272
Score = 61.6 bits (149), Expect = 1e-09
Identities = 58/234 (24%), Positives = 109/234 (46%), Gaps = 19/234 (8%)
Query: 391 FFSHSLKGEID----FNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAM 446
FF L G + N ++ PS AV + L++ +T+ +G +G+GK+T
Sbjct: 917 FFERELPGLVPGVCVKNLVKIFEPSGRPAV--DRLNITFYENQITAFLGHNGAGKTTTLS 974
Query: 447 LLLRLYDPQNGKILIDGVDIK-ELDPMYLRSQIGSVSQEPTLFSG-TIYENILYGVNDSS 504
+L L P +G +L+ G DI+ LD +R +G Q LF T+ E+IL+
Sbjct: 975 ILTGLLPPTSGTVLVGGKDIETNLDA--VRQSLGMCPQHNILFHHLTVAEHILFYAQLKG 1032
Query: 505 SVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILL 564
+ +EA + G E LSGG ++++++A A + +K+++
Sbjct: 1033 --------RSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVV 1084
Query: 565 LDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIR-KSNQICVLDKGKI 617
LDE TS +D + + + K G+T++ H + ++I ++ +G++
Sbjct: 1085 LDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRL 1138
Score = 43.5 bits (102), Expect = 5e-04
Identities = 25/86 (29%), Positives = 48/86 (55%), Gaps = 2/86 (2%)
Query: 543 SGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLS 601
SGG K++++ A ALI ++LLDE T+ +D + ++ + I +I EG+ V+ +H +
Sbjct: 2072 SGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSME 2131
Query: 602 TIRK-SNQICVLDKGKIVEIGSYAHL 626
++ ++ KG +G+ HL
Sbjct: 2132 ECEALCTRLAIMVKGAFQCLGTIQHL 2157
>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular
activities. AAA - ATPases associated with a variety of
cellular activities. This profile/alignment only detects
a fraction of this vast family. The poorly conserved
N-terminal helix is missing from the alignment.
Length = 148
Score = 56.2 bits (135), Expect = 2e-09
Identities = 40/188 (21%), Positives = 61/188 (32%), Gaps = 62/188 (32%)
Query: 427 SGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPT 486
G + ++G GSGK+TLA L R P G + +D + ++
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPPGG-------GVIYIDGEDILEEVLDQLLL-- 51
Query: 487 LFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQ 546
IVG + SG
Sbjct: 52 ----------------------------------------------IIVGGKKASGSGEL 65
Query: 547 KQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIE-------KLIEGKTVLTIAHR 599
+ R+A+A A K +L+LDE TS LDAE E L+ E K + TV+ +
Sbjct: 66 RLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125
Query: 600 LSTIRKSN 607
+ +
Sbjct: 126 EKDLGPAL 133
>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed.
Length = 635
Score = 60.0 bits (146), Expect = 2e-09
Identities = 58/218 (26%), Positives = 98/218 (44%), Gaps = 55/218 (25%)
Query: 398 GEIDF--NNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQ 455
G+I F N+ + ++ D S ++Q G ++IG +G GK+TL L+L
Sbjct: 316 GKIVFEMENVNYQID---GKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQAD 372
Query: 456 NGKILIDGVDIK---------ELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSV 506
+G+I G ++ ELDP T+ +N+ G
Sbjct: 373 SGRIHC-GTKLEVAYFDQHRAELDP-----------------EKTVMDNLAEG------- 407
Query: 507 TKSDIIHAAKEANAYGFVIDF----KNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKI 562
K +++ + + G++ DF K T V LSGG++ R+ +AR +K S +
Sbjct: 408 -KQEVMVNGRPRHVLGYLQDFLFHPKRAM-TPVK----ALSGGERNRLLLARLFLKPSNL 461
Query: 563 LLLDEATSALDAENEYLVQSAIEKLIEG--KTVLTIAH 598
L+LDE T+ LD E L +E+L++ TVL ++H
Sbjct: 462 LILDEPTNDLDVETLEL----LEELLDSYQGTVLLVSH 495
Score = 52.3 bits (126), Expect = 6e-07
Identities = 67/238 (28%), Positives = 107/238 (44%), Gaps = 53/238 (22%)
Query: 414 DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILID-GVDIKELDPM 472
DA +L++ L I+ ++G +G+GKSTL +L NG++L+D G I E D +
Sbjct: 15 DAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKIL-------NGEVLLDDGRIIYEQDLI 67
Query: 473 YLRSQIGSVSQEPTL-FSGTIYENILYGVNDSSSVTKS------DIIHAAKEANAYGF-- 523
R Q Q+P GT+Y+ + G+ + + K + E N
Sbjct: 68 VARLQ-----QDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAK 122
Query: 524 ---VIDFKNG--FDT----IVGERGI-------MLSGGQKQRIAIARALIKKSKILLLDE 567
+D N + ++ + G+ LSGG ++ A+ RAL+ +LLLDE
Sbjct: 123 LQEQLDHHNLWQLENRINEVLAQLGLDPDAALSSLSGGWLRKAALGRALVSNPDVLLLDE 182
Query: 568 ATSALDAENEYLVQSAIEKL------IEGKTVLTIAHRLSTIRK-SNQICVLDKGKIV 618
T+ LD E IE L +G + I+H S IR + +I LD+GK+V
Sbjct: 183 PTNHLDIE-------TIEWLEGFLKTFQGSIIF-ISHDRSFIRNMATRIVDLDRGKLV 232
>gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 235
Score = 57.4 bits (139), Expect = 3e-09
Identities = 26/57 (45%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 543 SGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAI-EKLIEGKTVLTIAH 598
SGG++QR+ IAR I ILLLDE T++LDA N +V I E G ++ I H
Sbjct: 154 SGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFH 210
Score = 46.3 bits (110), Expect = 2e-05
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 8/75 (10%)
Query: 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILI----DGVDIKELDPM 472
+L ++SL + +G + G SGSGKSTL L Y P G+IL+ + VD+ +P
Sbjct: 26 VLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPR 85
Query: 473 YL----RSQIGSVSQ 483
+ R+ IG VSQ
Sbjct: 86 EVLEVRRTTIGYVSQ 100
>gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 214
Score = 57.2 bits (138), Expect = 3e-09
Identities = 48/191 (25%), Positives = 81/191 (42%), Gaps = 23/191 (12%)
Query: 411 SRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELD 470
SR + + L + +G V G +G+GK+TL +L L ++G+I IDG D
Sbjct: 20 SRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGD 79
Query: 471 PM----YLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVID 526
YL + + + + + L+G A + + ++
Sbjct: 80 RSRFMAYL-GHLPGLKADLSTLENLHFLCGLHGR------------RAKQMPGSALAIVG 126
Query: 527 FKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEK 586
DT+V + LS GQK+R+A+AR + + + LLDE + LD E LV I
Sbjct: 127 LAGYEDTLVRQ----LSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISA 182
Query: 587 LI--EGKTVLT 595
+ G ++T
Sbjct: 183 HLRGGGAALVT 193
>gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 326
Score = 58.2 bits (141), Expect = 4e-09
Identities = 60/242 (24%), Positives = 112/242 (46%), Gaps = 54/242 (22%)
Query: 421 LSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD-PQNGKIL-----IDGVDIKELDPMYL 474
+S ++ G + ++G SGSGKS ++ ++ L D P G+++ +G D++ +
Sbjct: 26 ISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYP--GRVMAEKLEFNGQDLQRISEKER 83
Query: 475 RSQIGS-VSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAK------EANAYGFVIDF 527
R+ +G+ V+ I+++ + +N +V I+ A K + ID
Sbjct: 84 RNLVGAEVAM--------IFQDPMTSLNPCYTV-GFQIMEAIKVHQGGNKKTRRQRAIDL 134
Query: 528 KNGFDTIVGERGI------------MLSGGQKQRIAIARALIKKSKILLLDEATSALDAE 575
VG I LSGG QR+ IA A+ + K+L+ DE T+ALD
Sbjct: 135 L----NQVG---IPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVT 187
Query: 576 NEYLVQSAIEKLI------EGKTVLTIAHRLSTIRKS-NQICVLDKGKIVEIGSYAHLIK 628
+Q+ I +L+ E ++ I H L+ + ++ ++I V+ G++VE G + +
Sbjct: 188 ----IQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHDIFR 243
Query: 629 NP 630
P
Sbjct: 244 AP 245
>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation
factor 3, subfamily F. Elongation factor 3 (EF-3) is a
cytosolic protein required by fungal ribosomes for in
vitro protein synthesis and for in vivo growth. EF-3
stimulates the binding of the EF-1: GTP: aa-tRNA ternary
complex to the ribosomal A site by facilitated release
of the deacylated tRNA from the E site. The reaction
requires ATP hydrolysis. EF-3 contains two ATP
nucleotide binding sequence (NBS) motifs. NBSI is
sufficient for the intrinsic ATPase activity. NBSII is
essential for the ribosome-stimulated functions.
Length = 144
Score = 54.8 bits (133), Expect = 5e-09
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 13/81 (16%)
Query: 542 LSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEG-----KTVLTI 596
LSGG+K R+A+A+ L++ +LLLDE T+ LD E +IE L E TV+ +
Sbjct: 71 LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLE-------SIEALEEALKEYPGTVILV 123
Query: 597 AHRLSTIRK-SNQICVLDKGK 616
+H + + + +I L+ GK
Sbjct: 124 SHDRYFLDQVATKIIELEDGK 144
Score = 47.1 bits (113), Expect = 3e-06
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
I+ N+ +Y + +L D+SL I G ++G +G+GKSTL L+ +P G +
Sbjct: 1 IELENLSKTYGGKL---LLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIV 57
>gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component;
Provisional.
Length = 330
Score = 57.0 bits (138), Expect = 1e-08
Identities = 70/261 (26%), Positives = 125/261 (47%), Gaps = 50/261 (19%)
Query: 400 IDFNNIRFSYPSRPDAVI--LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNG 457
+D ++R ++ S PD + +NDL+ +++G ++G SGSGKS A L+ L NG
Sbjct: 13 LDVKDLRVTF-STPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLL-AANG 70
Query: 458 KI----LIDGVDI-----KELDPMYLRS-QIGSVSQEPTLFSGTIYENI---------LY 498
+I +G +I KEL+ + R+ QI + Q+P + S Y + L+
Sbjct: 71 RIGGSATFNGREILNLPEKELNKL--RAEQISMIFQDP-MTSLNPYMRVGEQLMEVLMLH 127
Query: 499 -GVNDSSSVTKS-DIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARAL 556
G++ + + +S ++ A K A + + + F SGG +QR+ IA AL
Sbjct: 128 KGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEF-----------SGGMRQRVMIAMAL 176
Query: 557 IKKSKILLLDEATSALDAENEYLVQSAIEKLIE------GKTVLTIAHRLSTIRKS-NQI 609
+ + K+L+ DE T+ALD VQ+ I L+ ++ I H L + +++
Sbjct: 177 LCRPKLLIADEPTTALDVT----VQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKV 232
Query: 610 CVLDKGKIVEIGSYAHLIKNP 630
V+ G+ +E G+ + P
Sbjct: 233 LVMYAGRTMEYGNARDVFYQP 253
>gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an
uncharacterized transporter similar in sequence to NatA.
NatA is the ATPase component of a bacterial ABC-type
Na+ transport system called NatAB, which catalyzes
ATP-dependent electrogenic Na+ extrusion without
mechanically coupled to proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilis, NatAB is inducible by agents
such as ethanol and protonophores, which lower the
proton-motive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunorubicin- and doxorubicin-efflux
system. Hence, the functional NatAB is presumably
assembled with two copies of the single ATP-binding
protein and the single integral membrane protein.
Length = 236
Score = 55.4 bits (134), Expect = 1e-08
Identities = 59/227 (25%), Positives = 101/227 (44%), Gaps = 34/227 (14%)
Query: 407 FSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDI 466
+ L +S I+ G + IG +G+GK+T +L L P +G++ + G+
Sbjct: 26 LFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVP 85
Query: 467 KELDPMYLRSQIGSV-SQEPTLF-------SGTIYENILYGVNDSSSVTKSDIIHAAKEA 518
+ +LR +IG V Q+ L+ S + I Y + + K
Sbjct: 86 WKRRKKFLR-RIGVVFGQKTQLWWDLPVIDSFYLLAAI-YDLPPA---------RFKKRL 134
Query: 519 NAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEY 578
+ ++D + DT V + LS GQ+ R IA AL+ + +IL LDE T LD
Sbjct: 135 DELSELLDLEELLDTPVRQ----LSLGQRMRAEIAAALLHEPEILFLDEPTIGLDV---- 186
Query: 579 LVQSAIEKLIE------GKTVLTIAHRLSTIRK-SNQICVLDKGKIV 618
+ Q I ++ G TVL +H + I + ++ V+DKG+++
Sbjct: 187 VAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLL 233
>gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase
L inhibitor. The ABC ATPase RNase L inhibitor (RLI) is
a key enzyme in ribosomal biogenesis, formation of
translation preinitiation complexes, and assembly of HIV
capsids. RLI's are not transport proteins, and thus
cluster with a group of soluble proteins that lack the
transmembrane components commonly found in other members
of the family. Structurally, RLI's have an N-terminal
Fe-S domain and two nucleotide-binding domains, which
are arranged to form two composite active sites in their
interface cleft. RLI is one of the most conserved
enzymes between archaea and eukaryotes with a sequence
identity more than 48%. The high degree of evolutionary
conservation suggests that RLI performs a central role
in archaeal and eukaryotic physiology.
Length = 177
Score = 54.1 bits (130), Expect = 2e-08
Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 540 IMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIA 597
I LSGG+ QR+AIA AL++ + L DE ++ LD E AI +L E KT L +
Sbjct: 70 IDLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVE 129
Query: 598 HRLSTI 603
H L+ +
Sbjct: 130 HDLAVL 135
>gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional.
Length = 248
Score = 54.9 bits (133), Expect = 2e-08
Identities = 57/232 (24%), Positives = 111/232 (47%), Gaps = 42/232 (18%)
Query: 421 LSLKIQSGSMTSVIGSSGSGKSTL----AMLLLRLYDPQNGKILIDGVDIKELDPMYLRS 476
LS ++++G + ++G +G+GKSTL A LL P +G I G ++ L
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLL-----PGSGSIQFAGQPLEAWSAAELAR 69
Query: 477 QIGSVSQE-PTLFSGTIYENI-LYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTI 534
+SQ+ F+ +++ + L+ D A+A V + D +
Sbjct: 70 HRAYLSQQQTPPFAMPVFQYLTLHQ---------PDKTRTEAVASALNEVAEALGLDDKL 120
Query: 535 VGERGI-MLSGGQKQRIAIARALIK-------KSKILLLDEATSALD-AENEYLVQSAIE 585
R + LSGG+ QR+ +A +++ ++LLLDE ++LD A+ Q+A++
Sbjct: 121 --GRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQ-----QAALD 173
Query: 586 KLIE-----GKTVLTIAHRLS-TIRKSNQICVLDKGKIVEIGSYAHLIKNPN 631
+L+ G V+ +H L+ T+R ++++ +L +GK++ G ++ N
Sbjct: 174 RLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLTPEN 225
>gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional.
Length = 718
Score = 55.6 bits (134), Expect = 5e-08
Identities = 60/250 (24%), Positives = 98/250 (39%), Gaps = 88/250 (35%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
I F++ F YP P ++ +L+ I S +++G +G GKST+ L+ P +G +
Sbjct: 509 ISFSDASFGYPGGP--LLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTV 566
Query: 460 L--------------IDGVDIKELDPMY------------LRSQIGSVSQEPTLFSGTIY 493
+DG+D+ +Y LR+ +GS +G +
Sbjct: 567 FRSAKVRMAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFG-----VTGNLA 621
Query: 494 ENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIA 553
+Y LSGGQK R+A A
Sbjct: 622 LQPMY------------------------------------------TLSGGQKSRVAFA 639
Query: 554 RALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKT-----VLTIAHRLSTIRKS-N 607
+ KK ILLLDE ++ LD + A+E LI+G VL ++H I S +
Sbjct: 640 KITFKKPHILLLDEPSNHLDLD-------AVEALIQGLVLFQGGVLMVSHDEHLISGSVD 692
Query: 608 QICVLDKGKI 617
++ V+ +GK+
Sbjct: 693 ELWVVSEGKV 702
Score = 41.4 bits (97), Expect = 0.001
Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 543 SGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAH 598
SGG + RIA+ARAL + +LLLDE T+ LD +++ + K KT + ++H
Sbjct: 346 SGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW--PKTFIVVSH 399
>gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed.
Length = 248
Score = 51.3 bits (123), Expect = 4e-07
Identities = 59/230 (25%), Positives = 105/230 (45%), Gaps = 24/230 (10%)
Query: 411 SRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLL--RLYDPQNGKILIDGVDIKE 468
S D IL L+L+++ G + +++G +GSGKSTL+ L Y+ G + G D+ E
Sbjct: 10 SVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLE 69
Query: 469 LDP-------MYLRSQ----IGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKE 517
L P +++ Q I VS + L + N + + + D +E
Sbjct: 70 LSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTAL---NAVRSYRGQEPLDRFDFQDLMEE 126
Query: 518 ANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENE 577
A K D + + SGG+K+R I + + + ++ +LDE+ S LD +
Sbjct: 127 KIAL-----LKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDAL 181
Query: 578 YLVQSAIEKLIEGK---TVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYA 624
+V + L +GK ++T R+ K + + VL +G+IV+ G +
Sbjct: 182 KIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFT 231
>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional.
Length = 1470
Score = 52.9 bits (127), Expect = 5e-07
Identities = 68/265 (25%), Positives = 116/265 (43%), Gaps = 52/265 (19%)
Query: 407 FSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQ---NGKILIDG 463
+ + IL D S I+ MT ++G SGK+TL + L DP +G+I +G
Sbjct: 170 INLAKKTKLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNG 229
Query: 464 VDIKELDPM----YLRSQ----IGSVSQEPTL-FS------GTIYENILYGVNDSSSVTK 508
+ E P Y+ SQ +G ++ + TL FS GT Y+ + ++ + K
Sbjct: 230 YRLNEFVPRKTSAYI-SQNDVHVGVMTVKETLDFSARCQGVGTRYDLL----SELARREK 284
Query: 509 SDIIHAAKEANAY-----------GFVIDFKNGF-------DTIVGE---RGIMLSGGQK 547
I E + + + D+ DTIVG+ RGI SGGQK
Sbjct: 285 DAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGI--SGGQK 342
Query: 548 QRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRL-----ST 602
+R+ ++ +K L +DE ++ LD+ Y + +++++ T T+ L T
Sbjct: 343 KRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVH-LTEATVLMSLLQPAPET 401
Query: 603 IRKSNQICVLDKGKIVEIGSYAHLI 627
+ I +L +G+IV G H++
Sbjct: 402 FDLFDDIILLSEGQIVYQGPRDHIL 426
Score = 47.1 bits (112), Expect = 3e-05
Identities = 54/200 (27%), Positives = 94/200 (47%), Gaps = 29/200 (14%)
Query: 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLL--RLYDPQNGKILIDGVDIKELDPMYL 474
+L +++ + G +T+++G SG+GK+TL +L + G I I G K+ +
Sbjct: 895 LLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ--ETFA 952
Query: 475 RSQIGSVSQEPTLFSG--TIYENILYGVNDSSSVTKSDIIHAAKEANAYG---FV----- 524
R I ++ + S T+ E+++Y S + KE + FV
Sbjct: 953 R--ISGYCEQNDIHSPQVTVRESLIY----------SAFLRLPKEVSKEEKMMFVDEVME 1000
Query: 525 -IDFKNGFDTIVGERGIM-LSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQS 582
++ N D IVG G+ LS Q++R+ IA L+ I+ +DE TS LDA +V
Sbjct: 1001 LVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1060
Query: 583 AIEKLIE-GKTVLTIAHRLS 601
+ ++ G+TV+ H+ S
Sbjct: 1061 TVRNTVDTGRTVVCTIHQPS 1080
>gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication,
recombination, and repair].
Length = 935
Score = 51.8 bits (125), Expect = 9e-07
Identities = 31/101 (30%), Positives = 53/101 (52%), Gaps = 10/101 (9%)
Query: 542 LSGGQKQRIAIARALIKKSK---ILLLDEATSALDAENEYLVQSAIEKLIE-GKTVLTIA 597
LSGG+ QR+ +A+ L K+S + +LDE T+ L ++ + + +L++ G TV+ I
Sbjct: 823 LSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIE 882
Query: 598 HRLSTIRKSNQICVL------DKGKIVEIGSYAHLIKNPNS 632
H L I+ ++ I L G+IV G+ + K S
Sbjct: 883 HNLDVIKTADWIIDLGPEGGDGGGEIVASGTPEEVAKVKAS 923
Score = 40.3 bits (95), Expect = 0.003
Identities = 35/111 (31%), Positives = 50/111 (45%), Gaps = 31/111 (27%)
Query: 542 LSGGQKQRIAIARALIKKSK----ILLLDEATSALDAENEYLVQSAIEKLIE-------- 589
LSGG+ QRI +A + S + +LDE + L Q E+LIE
Sbjct: 482 LSGGEAQRIRLATQI--GSGLTGVLYVLDEPSIGLH-------QRDNERLIETLKRLRDL 532
Query: 590 GKTVLTIAHRLSTIRKSNQICVLD--------KGKIVEIGSYAHLIKNPNS 632
G TV+ + H TIR ++ I +D G+IV G+ L+ NP S
Sbjct: 533 GNTVIVVEHDEDTIRAADHI--IDIGPGAGEHGGEIVAEGTPEELLANPES 581
Score = 39.5 bits (93), Expect = 0.006
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTL 444
L ++ ++I G T V G SGSGKSTL
Sbjct: 617 LKNIDVEIPLGVFTCVTGVSGSGKSTL 643
Score = 32.2 bits (74), Expect = 1.1
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLA 445
L ++ L+I + + G SGSGKS+LA
Sbjct: 16 LKNIDLEIPRNKLVVITGLSGSGKSSLA 43
>gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision
repair protein UvrA. Nucleotide excision repair in
eubacteria is a process that repairs DNA damage by the
removal of a 12-13-mer oligonucleotide containing the
lesion. Recognition and cleavage of the damaged DNA is a
multistep ATP-dependent reaction that requires the UvrA,
UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases,
with UvrA having two ATP binding sites, which have the
characteristic signature of the family of ABC proteins,
and UvrB having one ATP binding site that is
structurally related to that of helicases.
Length = 176
Score = 47.7 bits (114), Expect = 3e-06
Identities = 46/195 (23%), Positives = 77/195 (39%), Gaps = 50/195 (25%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQ 477
L +L + I + V G SGSGKST L+ LI + P + R++
Sbjct: 11 LQNLDVSIPLNVLVVVTGVSGSGKST---LVNEGLYASGKARLISFL------PKFSRNK 61
Query: 478 IGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGE 537
+ + Q F+ID G+ T+ G+
Sbjct: 62 LIFIDQ-------------------------------------LQFLIDVGLGYLTL-GQ 83
Query: 538 RGIMLSGGQKQRIAIARALIKKSK--ILLLDEATSALDAENEYLVQSAIEKLI-EGKTVL 594
+ LSGG+ QR+ +A L + + +LDE ++ L ++ + I+ LI G TV+
Sbjct: 84 KLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVI 143
Query: 595 TIAHRLSTIRKSNQI 609
I H L + ++ I
Sbjct: 144 LIEHNLDVLSSADWI 158
>gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette
domain 1 of RNase L inhibitor. The ABC ATPase, RNase L
inhibitor (RLI), is a key enzyme in ribosomal
biogenesis, formation of translation preinitiation
complexes, and assembly of HIV capsids. RLI s are not
transport proteins and thus cluster with a group of
soluble proteins that lack the transmembrane components
commonly found in other members of the family.
Structurally, RLIs have an N-terminal Fe-S domain and
two nucleotide binding domains which are arranged to
form two composite active sites in their interface
cleft. RLI is one of the most conserved enzymes between
archaea and eukaryotes with a sequence identity more
than 48%. The high degree of evolutionary conservation
suggests that RLI performs a central role in archaeal
and eukaryotic physiology.
Length = 255
Score = 48.9 bits (117), Expect = 3e-06
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 542 LSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE-GKTVLTIAHRL 600
LSGG+ QR+AIA AL + + DE +S LD + I +L E VL + H L
Sbjct: 140 LSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDL 199
Query: 601 STIRK-SNQICVL 612
+ + S+ I L
Sbjct: 200 AVLDYLSDYIHCL 212
>gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 330
Score = 49.1 bits (117), Expect = 3e-06
Identities = 55/242 (22%), Positives = 106/242 (43%), Gaps = 41/242 (16%)
Query: 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILID-----GVDIKELDP 471
++ +S+ + G + ++G SGSGKS +A + + N ++ D +D+ L P
Sbjct: 22 AVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNK-DNWRVTADRMRFDDIDLLRLSP 80
Query: 472 MYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYG-----FVID 526
R +G ++ I++ ++ S V + +I G F
Sbjct: 81 RERRKLVG---HNVSM----IFQEPQSCLDPSERVGRQ-LIQNIPAWTYKGRWWQRFGWR 132
Query: 527 FKNGFDTI--VG---ERGIM------LSGGQKQRIAIARALIKKSKILLLDEATSALDAE 575
+ + + VG + IM L+ G+ Q++ IA AL + ++L+ DE T++++
Sbjct: 133 KRRAIELLHRVGIKDHKDIMRSYPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEP- 191
Query: 576 NEYLVQSAIEKLI------EGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLIK 628
Q+ I +L+ T+L I+H L I + +++I VL G+ VE L+
Sbjct: 192 ---TTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTVESAPSEELVT 248
Query: 629 NP 630
P
Sbjct: 249 MP 250
>gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK;
Provisional.
Length = 258
Score = 45.7 bits (109), Expect = 3e-05
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 11/86 (12%)
Query: 543 SGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKT------VLTI 596
SGG +QR+ IAR L+ +++ +DE T LD VQ+ + L+ G V+ +
Sbjct: 153 SGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVS----VQARLLDLLRGLVRELGLAVVIV 208
Query: 597 AHRLSTIRK-SNQICVLDKGKIVEIG 621
H L+ R ++++ V+ +G++VE G
Sbjct: 209 THDLAVARLLAHRLLVMKQGRVVESG 234
Score = 38.0 bits (89), Expect = 0.008
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 11/76 (14%)
Query: 420 DLSLKIQSGSMTSVIGSSGSGKST-LAMLLLRLYDPQNGKILIDGVDIKELD-------- 470
D+S + G + ++G SGSGK+T L L RL P G++ D + D
Sbjct: 24 DVSFDLYPGEVLGIVGESGSGKTTLLNALSARL-APDAGEVHYRMRDGQLRDLYALSEAE 82
Query: 471 -PMYLRSQIGSVSQEP 485
LR++ G V Q P
Sbjct: 83 RRRLLRTEWGFVHQHP 98
>gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit. This family is a
member of the ABC transporter superfamily of proteins of
which all members for which functions are known except
the UvrA proteins are involved in the transport of
material through membranes. UvrA orthologs are involved
in the recognition of DNA damage as a step in nucleotide
excision repair. This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 925
Score = 46.5 bits (111), Expect = 4e-05
Identities = 26/78 (33%), Positives = 47/78 (60%), Gaps = 6/78 (7%)
Query: 542 LSGGQKQRIAIARALIKKSK---ILLLDEATSALDAENEYLVQSAIEKLIE-GKTVLTIA 597
LSGG+ QRI +A+ L K+S + +LDE T+ L ++ + +++L++ G TV+ I
Sbjct: 830 LSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDKGNTVVVIE 889
Query: 598 HRLSTIRKSNQICVLDKG 615
H L I+ ++ ++D G
Sbjct: 890 HNLDVIKTAD--YIIDLG 905
Score = 37.3 bits (87), Expect = 0.026
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTL 444
L ++++ I G T + G SGSGKSTL
Sbjct: 624 LKNITVSIPLGLFTCITGVSGSGKSTL 650
Score = 33.1 bits (76), Expect = 0.54
Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 34/133 (25%)
Query: 522 GFVIDFKNGFDTIVGERGI-MLSGGQKQRIAIARALIKKSK----ILLLDEATSALDAEN 576
GF+ID G D + R LSGG+ QRI +A + S + +LDE + L
Sbjct: 470 GFLIDV--GLDYLSLSRAAGTLSGGEAQRIRLATQI--GSGLTGVLYVLDEPSIGLH--- 522
Query: 577 EYLVQSAIEKLIE--------GKTVLTIAHRLSTIRKSNQICVLD--------KGKIVEI 620
Q +LI G T++ + H TIR ++ V+D G++V
Sbjct: 523 ----QRDNRRLINTLKRLRDLGNTLIVVEHDEDTIRAADY--VIDIGPGAGEHGGEVVAS 576
Query: 621 GSYAHLIKNPNSM 633
G+ ++ NP+S+
Sbjct: 577 GTPEEILANPDSL 589
>gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the
excision repair protein UvrA. Nucleotide excision
repair in eubacteria is a process that repairs DNA
damage by the removal of a 12-13-mer oligonucleotide
containing the lesion. Recognition and cleavage of the
damaged DNA is a multistep ATP-dependent reaction that
requires the UvrA, UvrB, and UvrC proteins. Both UvrA
and UvrB are ATPases, with UvrA having two ATP binding
sites, which have the characteristic signature of the
family of ABC proteins and UvrB having one ATP binding
site that is structurally related to that of helicases.
Length = 261
Score = 45.3 bits (108), Expect = 4e-05
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 18/79 (22%)
Query: 542 LSGGQKQRIAIARALIKKSK---ILLLDEATSALDAENEYLVQSAIEKLIE--------G 590
LSGG+ QRI +A+ L K+S + +LDE T+ L + ++KL+E G
Sbjct: 170 LSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHD-------VKKLLEVLQRLVDKG 222
Query: 591 KTVLTIAHRLSTIRKSNQI 609
TV+ I H L I+ ++ I
Sbjct: 223 NTVVVIEHNLDVIKCADWI 241
Score = 36.1 bits (84), Expect = 0.039
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTL 444
L ++ + I G +T V G SGSGKS+L
Sbjct: 11 LKNIDVDIPLGVLTCVTGVSGSGKSSL 37
>gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein;
Provisional.
Length = 638
Score = 45.5 bits (108), Expect = 8e-05
Identities = 56/199 (28%), Positives = 90/199 (45%), Gaps = 39/199 (19%)
Query: 414 DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI-LIDGVDI-----K 467
D +IL+ + L + GS ++G +G+GKSTL LL P +G+I L G+ +
Sbjct: 324 DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQH 383
Query: 468 ELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDF 527
+L+ +LR+ S Q + E L D + +GF D
Sbjct: 384 QLE--FLRAD-ESPLQHLARLAPQELEQKL-----------RDYL------GGFGFQGD- 422
Query: 528 KNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKL 587
V E SGG+K R+ +A + ++ +LLLDE T+ LD + + Q+ E L
Sbjct: 423 ------KVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLD---MRQALTEAL 473
Query: 588 I--EGKTVLTIAHRLSTIR 604
I EG V+ ++H +R
Sbjct: 474 IDFEGALVV-VSHDRHLLR 491
Score = 39.8 bits (93), Expect = 0.004
Identities = 50/193 (25%), Positives = 71/193 (36%), Gaps = 61/193 (31%)
Query: 416 VILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLR 475
V+L++ + I G ++G +G GKSTL LL G G
Sbjct: 15 VLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPG-----------N 63
Query: 476 SQIGSVSQEPTLFSGTIYENILYG----------------VNDSSSVT----KSDIIHA- 514
Q+ V+QE E ++ G ND ++ K D I A
Sbjct: 64 WQLAWVNQETPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAW 123
Query: 515 ------AKEANAYGF--------VIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKS 560
A + GF V DF SGG + R+ +A+ALI +S
Sbjct: 124 TIRSRAASLLHGLGFSNEQLERPVSDF---------------SGGWRMRLNLAQALICRS 168
Query: 561 KILLLDEATSALD 573
+LLLDE T+ LD
Sbjct: 169 DLLLLDEPTNHLD 181
>gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter
ATP-binding protein; Provisional.
Length = 330
Score = 44.0 bits (104), Expect = 1e-04
Identities = 29/96 (30%), Positives = 51/96 (53%), Gaps = 11/96 (11%)
Query: 542 LSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI------EGKTVLT 595
L+ G+ Q++ IA AL + ++L+ DE T+A+ E Q+ I +L+ T+L
Sbjct: 159 LTEGECQKVMIAIALANQPRLLIADEPTNAM----EPTTQAQIFRLLTRLNQNNNTTILL 214
Query: 596 IAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLIKNP 630
I+H L + + +++I VL G+ VE L+ P
Sbjct: 215 ISHDLQMLSQWADKINVLYCGQTVETAPSKELVTTP 250
>gnl|CDD|234734 PRK00349, uvrA, excinuclease ABC subunit A; Reviewed.
Length = 943
Score = 43.1 bits (103), Expect = 4e-04
Identities = 38/108 (35%), Positives = 54/108 (50%), Gaps = 24/108 (22%)
Query: 542 LSGGQKQRIAIARALIKKS--KIL-LLDEATSALDAENEYLVQSAIEKLIE--------G 590
LSGG+ QR+ +A+ L K+S K L +LDE T+ L E+ I KL+E G
Sbjct: 831 LSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFED-------IRKLLEVLHRLVDKG 883
Query: 591 KTVLTIAHRLSTIRKSNQICVL-----DK-GKIVEIGSYAHLIKNPNS 632
TV+ I H L I+ ++ I L D G+IV G+ + K S
Sbjct: 884 NTVVVIEHNLDVIKTADWIIDLGPEGGDGGGEIVATGTPEEVAKVEAS 931
Score = 35.8 bits (84), Expect = 0.083
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTL 444
L ++ ++I G T V G SGSGKSTL
Sbjct: 625 LKNVDVEIPLGKFTCVTGVSGSGKSTL 651
Score = 29.3 bits (67), Expect = 8.8
Identities = 34/116 (29%), Positives = 54/116 (46%), Gaps = 39/116 (33%)
Query: 542 LSGGQKQRIAIARALIKKSKI---L-----LLDEATSALDAENEYLVQSAIEKLIE---- 589
LSGG+ QRI +A ++I L +LDE + L Q ++LIE
Sbjct: 490 LSGGEAQRIRLA------TQIGSGLTGVLYVLDEPSIGLH-------QRDNDRLIETLKH 536
Query: 590 ----GKTVLTIAHRLSTIRKSNQICVLD--------KGKIVEIGSYAHLIKNPNSM 633
G T++ + H TIR ++ I +D G++V G+ ++KNPNS+
Sbjct: 537 LRDLGNTLIVVEHDEDTIRAADYI--VDIGPGAGVHGGEVVASGTPEEIMKNPNSL 590
>gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit;
Provisional.
Length = 549
Score = 42.2 bits (99), Expect = 8e-04
Identities = 53/192 (27%), Positives = 87/192 (45%), Gaps = 29/192 (15%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQ 477
LN++S ++ G + +IG +GSGKSTL+ L+ + P G + I G +
Sbjct: 40 LNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGS----------AAL 89
Query: 478 IGSVSQEPTLFSGTIYENI-LYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVG 536
I S +G ENI L G+ +TK I E +I+F + +
Sbjct: 90 IAISSGLNGQLTGI--ENIELKGL--MMGLTKEKIKEIIPE------IIEFAD-IGKFIY 138
Query: 537 ERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE----GKT 592
+ S G K R+ A ++ IL++DEA S D + + ++K+ E GKT
Sbjct: 139 QPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGD---QTFTKKCLDKMNEFKEQGKT 195
Query: 593 VLTIAHRLSTIR 604
+ I+H LS ++
Sbjct: 196 IFFISHSLSQVK 207
>gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter
proteins. ABC-type Class 2 contains systems involved in
cellular processes other than transport. These families
are characterized by the fact that the ABC subunit is
made up of duplicated, fused ABC modules (ABC2). No
known transmembrane proteins or domains are associated
with these proteins.
Length = 162
Score = 39.7 bits (93), Expect = 0.001
Identities = 32/143 (22%), Positives = 56/143 (39%), Gaps = 28/143 (19%)
Query: 486 TLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIM---- 541
T G++ I+ G N S KS I+ +A + G +
Sbjct: 17 TFGEGSL--TIITGPNGSG---KSTIL----DAIGLALGGAQSATRRRSGVKAGCIVAAV 67
Query: 542 ----------LSGGQKQRIAIARAL----IKKSKILLLDEATSALDAENEY-LVQSAIEK 586
LSGG+K+ A+A L +K + +LDE LD + L ++ +E
Sbjct: 68 SAELIFTRLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEH 127
Query: 587 LIEGKTVLTIAHRLSTIRKSNQI 609
L++G V+ I H ++++
Sbjct: 128 LVKGAQVIVITHLPELAELADKL 150
>gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50. The
catalytic domains of Rad50 are similar to the
ATP-binding cassette of ABC transporters, but are not
associated with membrane-spanning domains. The conserved
ATP-binding motifs common to Rad50 and the ABC
transporter family include the Walker A and Walker B
motifs, the Q loop, a histidine residue in the switch
region, a D-loop, and a conserved LSGG sequence. This
conserved sequence, LSGG, is the most specific and
characteristic motif of this family and is thus known as
the ABC signature sequence.
Length = 204
Score = 38.4 bits (90), Expect = 0.005
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 9/54 (16%)
Query: 542 LSGGQKQ------RIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE 589
SGG+K R+A+A IL LDE T+ LD EN ++ ++ ++IE
Sbjct: 116 CSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEEN---IEESLAEIIE 166
>gnl|CDD|213237 cd03270, ABC_UvrA_I, ATP-binding cassette domain I of the excision
repair protein UvrA. Nucleotide excision repair in
eubacteria is a process that repairs DNA damage by the
removal of a 12-13-mer oligonucleotide containing the
lesion. Recognition and cleavage of the damaged DNA is a
multistep ATP-dependent reaction that requires the UvrA,
UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases,
with UvrA having two ATP binding sites, which have the
characteristic signature of the family of ABC proteins,
and UvrB having one ATP binding site that is
structurally related to that of helicases.
Length = 226
Score = 38.0 bits (89), Expect = 0.008
Identities = 54/222 (24%), Positives = 90/222 (40%), Gaps = 54/222 (24%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLL-----RLYDPQNGKILIDGVDIKELDPM 472
L ++ + I + + G SGSGKS+LA + R Y ++ +
Sbjct: 11 LKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRRY--------VESL------SA 56
Query: 473 YLRSQIGSVSQEPTL-----FSGTI-YENILYGVNDSSSV-TKSDI-----IHAAKEA-- 518
Y R +G + +P + S I + N S+V T ++I + A+
Sbjct: 57 YARQFLGQMD-KPDVDSIEGLSPAIAIDQKTTSRNPRSTVGTVTEIYDYLRLLFARVGIR 115
Query: 519 NAYGFVIDFKNGFDTIVGERGIM-LSGGQKQRIAIARALIKK--SKILLLDEATSALDAE 575
GF++D G+ T+ R LSGG+ QRI +A + + +LDE + L
Sbjct: 116 ERLGFLVDVGLGYLTL--SRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLH-- 171
Query: 576 NEYLVQSAIEKLIE--------GKTVLTIAHRLSTIRKSNQI 609
++LIE G TVL + H TIR ++ +
Sbjct: 172 -----PRDNDRLIETLKRLRDLGNTVLVVEHDEDTIRAADHV 208
>gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein;
Provisional.
Length = 530
Score = 37.9 bits (89), Expect = 0.016
Identities = 15/56 (26%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 404 NIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
N+ + + P + +L+L +++G ++IG +G GK+TL L+ +P +G +
Sbjct: 324 NLTKGFDNGP---LFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTV 376
Score = 33.3 bits (77), Expect = 0.41
Identities = 20/57 (35%), Positives = 38/57 (66%), Gaps = 2/57 (3%)
Query: 542 LSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAH 598
LSGG+K R+ + +++K +L++DE T+ +D E+ + A+EK EG T++ ++H
Sbjct: 439 LSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY-EG-TLIFVSH 493
Score = 32.2 bits (74), Expect = 0.89
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 545 GQKQRIAIARALIKKSKILLLDEATSALD 573
G K R+ +A+AL ILLLDE T+ LD
Sbjct: 159 GWKLRVLLAQALFSNPDILLLDEPTNNLD 187
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 37.8 bits (88), Expect = 0.018
Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 11/67 (16%)
Query: 542 LSGGQKQ------RIAIARALIKKSKI--LLLDEATSALDAEN-EYLVQSAIEKLIE-GK 591
LSGG++ R+A++ L ++++ L LDE LD E E L + +E+L+ G+
Sbjct: 816 LSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAE-ILEELLSDGR 874
Query: 592 TVLTIAH 598
++ I+H
Sbjct: 875 QIIIISH 881
>gnl|CDD|221803 pfam12846, AAA_10, AAA-like domain. This family of domains contain
a P-loop motif that is characteristic of the AAA
superfamily. Many of the proteins in this family are
conjugative transfer proteins.
Length = 316
Score = 36.6 bits (85), Expect = 0.028
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 433 VIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIK 467
++G SGSGKSTL LL + G++++ +D K
Sbjct: 6 IVGPSGSGKSTLLKLLALRLLARGGRVIV--IDPK 38
>gnl|CDD|222219 pfam13558, SbcCD_C, Putative exonuclease SbcCD, C subunit.
Possible exonuclease SbcCD, C subunit, on AAA proteins.
Length = 79
Score = 32.5 bits (75), Expect = 0.075
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 12/47 (25%)
Query: 542 LSGGQKQR---IAIARALIKKSK---------ILLLDEATSALDAEN 576
LSGG+KQ +A+A AL + ++ LDEA + LD EN
Sbjct: 23 LSGGEKQVLAYLALAAALAAQYGSNRGGPAPRLIFLDEAFAKLDEEN 69
>gnl|CDD|219014 pfam06414, Zeta_toxin, Zeta toxin. This family consists of several
bacterial zeta toxin proteins. Zeta toxin is thought to
be part of a postregulational killing system in
bacteria. It relies on antitoxin/toxin systems that
secure stable inheritance of low and medium copy number
plasmids during cell division and kill cells that have
lost the plasmid.
Length = 191
Score = 34.2 bits (79), Expect = 0.11
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 435 GSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMY 473
G G+GK+ LA LL + ID +++ P Y
Sbjct: 19 GQPGAGKTELARALLEELG-GGNVVRIDPDELRTYHPDY 56
>gnl|CDD|222104 pfam13401, AAA_22, AAA domain.
Length = 124
Score = 33.0 bits (76), Expect = 0.12
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 425 IQSGSMTSVIGSSGSGKSTLAMLLLRLYDP 454
+ + + G SGSGK+TL L R
Sbjct: 1 RRGAGIGVLTGESGSGKTTLLRRLARQLPN 30
>gnl|CDD|221983 pfam13207, AAA_17, AAA domain.
Length = 114
Score = 32.7 bits (74), Expect = 0.15
Identities = 10/21 (47%), Positives = 11/21 (52%)
Query: 433 VIGSSGSGKSTLAMLLLRLYD 453
+ G GSGKSTLA L
Sbjct: 4 ITGPPGSGKSTLAKKLAEKLG 24
>gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding
subunit; Provisional.
Length = 264
Score = 34.4 bits (79), Expect = 0.16
Identities = 52/229 (22%), Positives = 92/229 (40%), Gaps = 68/229 (29%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKIL----------------- 460
L+D+SLK G + ++G +GSGKSTL+ ++ P GK+
Sbjct: 40 LDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAISAGLSGQ 99
Query: 461 ---IDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKE 517
I+ ++ K L + R +I +++ + FS + E I V SS ++ +
Sbjct: 100 LTGIENIEFKMLCMGFKRKEIKAMTPKIIEFS-ELGEFIYQPVKKYSSGMRAKL------ 152
Query: 518 ANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENE 577
GF I+ D IL++DEA S D +
Sbjct: 153 ----GFSINITVNPD-----------------------------ILVIDEALSVGD---Q 176
Query: 578 YLVQSAIEKLIE----GKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIG 621
Q ++K+ E KT+ ++H L +R+ +I ++ GK+ + G
Sbjct: 177 TFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYG 225
>gnl|CDD|225982 COG3451, VirB4, Type IV secretory pathway, VirB4 components
[Intracellular trafficking and secretion].
Length = 796
Score = 34.3 bits (79), Expect = 0.24
Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 430 MTSVIGSSGSGKSTL-AMLLLRLYDPQNGKILI 461
T +IG +G+GK+ L + LL + N +I+
Sbjct: 438 HTLIIGPTGAGKTVLLSFLLAQALKYGNPQIVA 470
>gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional.
Length = 1809
Score = 34.0 bits (78), Expect = 0.28
Identities = 22/75 (29%), Positives = 41/75 (54%), Gaps = 10/75 (13%)
Query: 542 LSGGQKQRIAIARALI---KKSKILLLDEATSALDAENEYLVQSAIEKLI----EGKTVL 594
LSGG+ QR+ +A L+ KK + +LDE T+ L + +++ I L +G TV+
Sbjct: 810 LSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHD---IKALIYVLQSLTHQGHTVV 866
Query: 595 TIAHRLSTIRKSNQI 609
I H + ++ ++ +
Sbjct: 867 IIEHNMHVVKVADYV 881
Score = 32.9 bits (75), Expect = 0.73
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTL 444
L DL++ + G +T V G SGSGKS+L
Sbjct: 611 LKDLTISLPLGRLTVVTGVSGSGKSSL 637
Score = 31.0 bits (70), Expect = 2.8
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 542 LSGGQKQRIAIARALI---KKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTVLTIA 597
LS +K I IA+ L K + LLDE ++LD + + + + L+ G +V+ I
Sbjct: 1700 LSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSLGHSVIYID 1759
Query: 598 H 598
H
Sbjct: 1760 H 1760
Score = 30.2 bits (68), Expect = 4.6
Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 6/84 (7%)
Query: 519 NAYGFVIDFKNGFDTIVGERGI-MLSGGQKQRIAIARAL-IKKSKIL-LLDEATSALDAE 575
+ +ID G + ER + LSGG+++R A+A+ L + I +LDE + L +
Sbjct: 455 SRLSILIDL--GLPYLTPERALATLSGGEQERTALAKHLGAELIGITYILDEPSIGLHPQ 512
Query: 576 NEYLVQSAIEKLI-EGKTVLTIAH 598
+ + + + I+KL +G TVL + H
Sbjct: 513 DTHKLINVIKKLRDQGNTVLLVEH 536
>gnl|CDD|205733 pfam13555, AAA_29, P-loop containing region of AAA domain.
Length = 60
Score = 30.2 bits (69), Expect = 0.31
Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 426 QSGSMTSVIGSSGSGKSTL--AMLLL 449
T + G SGSGKSTL A+ L
Sbjct: 19 IDPKGTLLTGPSGSGKSTLIDAIQTL 44
>gnl|CDD|219538 pfam07728, AAA_5, AAA domain (dynein-related subfamily). This Pfam
entry includes some of the AAA proteins not detected by
the pfam00004 model.
Length = 135
Score = 31.9 bits (73), Expect = 0.39
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 433 VIGSSGSGKSTLAMLLLRLYDPQN 456
++G G+GKS LA L +
Sbjct: 4 LVGPPGTGKSELAERLAAALSNRP 27
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 33.5 bits (77), Expect = 0.42
Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 8/75 (10%)
Query: 541 MLSGGQKQRIAIARALI------KKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVL 594
+LSGG+K A+A L+ + + +LDE +ALD N V I+++ + +
Sbjct: 1066 LLSGGEKSLTALA--LLFAIQKYRPAPFYVLDEVDAALDDANVERVARLIKEMSKETQFI 1123
Query: 595 TIAHRLSTIRKSNQI 609
I HR T+ ++++
Sbjct: 1124 VITHRKGTMEAADRL 1138
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain. This domain is
found at the N terminus of SMC proteins. The SMC
(structural maintenance of chromosomes) superfamily
proteins have ATP-binding domains at the N- and
C-termini, and two extended coiled-coil domains separated
by a hinge in the middle. The eukaryotic SMC proteins
form two kind of heterodimers: the SMC1/SMC3 and the
SMC2/SMC4 types. These heterodimers constitute an
essential part of higher order complexes, which are
involved in chromatin and DNA dynamics. This family also
includes the RecF and RecN proteins that are involved in
DNA metabolism and recombination.
Length = 1162
Score = 33.4 bits (76), Expect = 0.45
Identities = 22/75 (29%), Positives = 41/75 (54%), Gaps = 8/75 (10%)
Query: 541 MLSGGQKQRIAIARALI------KKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVL 594
LSGG+K +A+A LI + + LLDE +ALD +N V + +++L + +
Sbjct: 1078 NLSGGEKTLVALA--LIFAIQKYRPAPFYLLDEIDAALDDQNVSRVANYLKELSKNAQFI 1135
Query: 595 TIAHRLSTIRKSNQI 609
I+ R + K++++
Sbjct: 1136 VISLREEMLEKADRL 1150
>gnl|CDD|181235 PRK08118, PRK08118, topology modulation protein; Reviewed.
Length = 167
Score = 31.9 bits (73), Expect = 0.51
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 10/43 (23%)
Query: 433 VIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLR 475
+IGS GSGKSTLA L G+ L + + LD ++ +
Sbjct: 6 LIGSGGSGKSTLARQL--------GEKL--NIPVHHLDALFWK 38
>gnl|CDD|213246 cd03279, ABC_sbcCD, ATP-binding cassette domain of sbcCD. SbcCD
and other Mre11/Rad50 (MR) complexes are implicated in
the metabolism of DNA ends. They cleave ends sealed by
hairpin structures and are thought to play a role in
removing protein bound to DNA termini.
Length = 213
Score = 32.2 bits (74), Expect = 0.57
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 11/68 (16%)
Query: 542 LSGGQKQRIAIARAL-----IKKSK-----ILLLDEATSALDAENEYLVQSAIEKL-IEG 590
LSGG+ +++ AL ++ L +DE LD E V +A+E + E
Sbjct: 124 LSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTEN 183
Query: 591 KTVLTIAH 598
+ V I+H
Sbjct: 184 RMVGVISH 191
>gnl|CDD|216796 pfam01935, DUF87, Domain of unknown function DUF87. The function
of this prokaryotic domain is unknown. It contains
several conserved aspartates and histidines that could
be metal ligands.
Length = 218
Score = 31.9 bits (73), Expect = 0.69
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 433 VIGSSGSGKSTLAMLLL-RLYDPQNGKILI 461
++GS+GSGKS +LL L + + +LI
Sbjct: 28 ILGSTGSGKSNTVAVLLEELLEKKGATVLI 57
>gnl|CDD|222307 pfam13671, AAA_33, AAA domain. This family of domains contain only
a P-loop motif, that is characteristic of the AAA
superfamily. Many of the proteins in this family are
just short fragments so there is no Walker B motif.
Length = 143
Score = 31.1 bits (71), Expect = 0.71
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 433 VIGSSGSGKSTLAMLLLR 450
++G GSGKST A LLR
Sbjct: 4 MVGLPGSGKSTFARRLLR 21
>gnl|CDD|180911 PRK07261, PRK07261, topology modulation protein; Provisional.
Length = 171
Score = 31.6 bits (72), Expect = 0.75
Identities = 13/22 (59%), Positives = 17/22 (77%)
Query: 432 SVIGSSGSGKSTLAMLLLRLYD 453
++IG SGSGKSTLA L + Y+
Sbjct: 4 AIIGYSGSGKSTLARKLSQHYN 25
>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional.
Length = 895
Score = 32.6 bits (74), Expect = 0.78
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 11/72 (15%)
Query: 525 IDFKNGFDTIVGERGIM-----LSGGQKQ------RIAIARALIKKSKILLLDEATSALD 573
ID F+ V G++ LSGG+K R+A+A+ L +L++DE T+ LD
Sbjct: 780 IDVDQDFNITVSRGGMVEGIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLD 839
Query: 574 AENEYLVQSAIE 585
+ ++ IE
Sbjct: 840 EDRRTNLKDIIE 851
>gnl|CDD|234988 PRK01889, PRK01889, GTPase RsgA; Reviewed.
Length = 356
Score = 32.2 bits (74), Expect = 0.89
Identities = 14/24 (58%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 427 SGSMTSV-IGSSGSGKSTLAMLLL 449
SG T +GSSG GKSTL LL
Sbjct: 193 SGGKTVALLGSSGVGKSTLVNALL 216
>gnl|CDD|237355 PRK13342, PRK13342, recombination factor protein RarA; Reviewed.
Length = 413
Score = 32.0 bits (74), Expect = 1.1
Identities = 11/26 (42%), Positives = 20/26 (76%), Gaps = 2/26 (7%)
Query: 425 IQSGSMTSVI--GSSGSGKSTLAMLL 448
I++G ++S+I G G+GK+TLA ++
Sbjct: 31 IEAGRLSSMILWGPPGTGKTTLARII 56
>gnl|CDD|222165 pfam13481, AAA_25, AAA domain. This AAA domain is found in a wide
variety of presumed DNA repair proteins.
Length = 154
Score = 30.7 bits (70), Expect = 1.1
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 10/47 (21%)
Query: 425 IQSGSMTSVIGSSGSGKSTLAM----------LLLRLYDPQNGKILI 461
+ G +T + G+ G+GKSTLA+ L + + G++L
Sbjct: 30 LPRGGLTLLAGAPGTGKSTLALDLAAAVATGRPFLGPFPVEPGRVLY 76
>gnl|CDD|225165 COG2256, MGS1, ATPase related to the helicase subunit of the
Holliday junction resolvase [DNA replication,
recombination, and repair].
Length = 436
Score = 31.8 bits (73), Expect = 1.1
Identities = 11/26 (42%), Positives = 19/26 (73%), Gaps = 2/26 (7%)
Query: 425 IQSGSMTSVI--GSSGSGKSTLAMLL 448
+++G + S+I G G+GK+TLA L+
Sbjct: 43 VEAGHLHSMILWGPPGTGKTTLARLI 68
>gnl|CDD|235825 PRK06547, PRK06547, hypothetical protein; Provisional.
Length = 172
Score = 30.9 bits (70), Expect = 1.2
Identities = 13/22 (59%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Query: 428 GSMTSVI-GSSGSGKSTLAMLL 448
G +T +I G SGSGK+TLA L
Sbjct: 14 GMITVLIDGRSGSGKTTLAGAL 35
>gnl|CDD|223637 COG0563, Adk, Adenylate kinase and related kinases [Nucleotide
transport and metabolism].
Length = 178
Score = 31.1 bits (71), Expect = 1.2
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 433 VIGSSGSGKSTLAMLL 448
++G G+GKSTLA L
Sbjct: 5 ILGPPGAGKSTLAKKL 20
>gnl|CDD|213245 cd03278, ABC_SMC_barmotin, ATP-binding cassette domain of barmotin,
a member of the SMC protein family. Barmotin is a tight
junction-associated protein expressed in rat epithelial
cells which is thought to have an important regulatory
role in tight junction barrier function. Barmotin
belongs to the SMC protein family. SMC proteins are
large (approximately 110 to 170 kDa), and each is
arranged into five recognizable domains. Amino-acid
sequence homology of SMC proteins between species is
largely confined to the amino- and carboxy-terminal
globular domains. The amino-terminal domain contains a
'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the
single-letter amino-acid code), which by mutational
studies has been shown to be essential in several
proteins. The carboxy-terminal domain contains a
sequence (the DA-box) that resembles a 'Walker B' motif,
and a motif with homology to the signature sequence of
the ATP-binding cassette (ABC) family of ATPases. The
sequence homology within the carboxy-terminal domain is
relatively high within the SMC1-SMC4 group, whereas SMC5
and SMC6 show some divergence in both of these
sequences. In eukaryotic cells, the proteins are found
as heterodimers of SMC1 paired with SMC3, SMC2 with
SMC4, and SMC5 with SMC6 (formerly known as Rad18).
Length = 197
Score = 30.9 bits (71), Expect = 1.2
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 8/75 (10%)
Query: 541 MLSGGQKQRIAIARALI------KKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVL 594
+LSGG+K A+A L+ + S +LDE +ALD N +++ + +
Sbjct: 113 LLSGGEKALTALA--LLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSKETQFI 170
Query: 595 TIAHRLSTIRKSNQI 609
I HR T+ ++++
Sbjct: 171 VITHRKGTMEAADRL 185
>gnl|CDD|225586 COG3044, COG3044, Predicted ATPase of the ABC class [General
function prediction only].
Length = 554
Score = 31.8 bits (72), Expect = 1.4
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 543 SGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLT 595
SG I A+ +K LL+DE TSA + LV+ + K EG+ LT
Sbjct: 322 SGSTSMAAWIQEAIEAGAKTLLIDEDTSATN----LLVRDVLAKESEGERTLT 370
>gnl|CDD|221970 pfam13191, AAA_16, AAA ATPase domain. This family of domains
contain a P-loop motif that is characteristic of the AAA
superfamily.
Length = 154
Score = 30.6 bits (69), Expect = 1.4
Identities = 12/44 (27%), Positives = 17/44 (38%)
Query: 433 VIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRS 476
+ G SG+GK++L LL GK + LR
Sbjct: 29 LTGPSGTGKTSLLRELLEGLLVAAGKCDQAERNPPYAFSQALRE 72
>gnl|CDD|238899 cd01918, HprK_C, HprK/P, the bifunctional histidine-containing
protein kinase/phosphatase, controls the phosphorylation
state of the phosphocarrier protein HPr and regulates
the utilization of carbon sources by gram-positive
bacteria. It catalyzes both the ATP-dependent
phosphorylation of Ser-46 of HPr and its
dephosphorylation by phosphorolysis. The latter reaction
uses inorganic phosphate as substrate and produces
pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK)
and the C-terminal catalytic domain of HprK/P are
structurally similar with conserved active site residues
suggesting these two phosphotransferases have related
functions. The HprK/P N-terminal domain is structurally
similar to the N-terminal domains of the MurE and MurF
amino acid ligases.
Length = 149
Score = 30.3 bits (69), Expect = 1.5
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 7/39 (17%)
Query: 434 IGSSGSGKSTLAMLLLRLYDPQNGKILI--DGVDIKELD 470
G SG GKS LA+ L+ + G L+ D V +K
Sbjct: 20 TGPSGIGKSELALELI-----KRGHRLVADDRVVVKREG 53
>gnl|CDD|227760 COG5473, COG5473, Predicted integral membrane protein [Function
unknown].
Length = 290
Score = 31.2 bits (71), Expect = 1.6
Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 3/46 (6%)
Query: 199 ISDGLRSTVMV---SAGVSMMFIISSKLALISLIIVPPVAGLAIVY 241
+ L + + V+ +I S + L +V PV G A +
Sbjct: 229 VRAVLANPGPMLLWGLIVAAALLIGSLPIFVGLAVVLPVLGHATWH 274
>gnl|CDD|220422 pfam09818, ABC_ATPase, Predicted ATPase of the ABC class. Members
of this family include various bacterial predicted ABC
class ATPases.
Length = 447
Score = 31.0 bits (71), Expect = 2.0
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 543 SGGQKQRIAIARALIKKSKILLLDEATSA 571
SG Q I AL + +LL+DE TSA
Sbjct: 323 SGSTSQAANIQEALEAGASLLLIDEDTSA 351
>gnl|CDD|216584 pfam01580, FtsK_SpoIIIE, FtsK/SpoIIIE family. FtsK has extensive
sequence similarity to wide variety of proteins from
prokaryotes and plasmids, termed the FtsK/SpoIIIE
family. This domain contains a putative ATP binding
P-loop motif. It is found in the FtsK cell division
protein from E. coli and the stage III sporulation
protein E SpoIIIE, which has roles in regulation of
prespore specific gene expression in B. subtilis. A
mutation in FtsK causes a temperature sensitive block in
cell division and it is involved in peptidoglycan
synthesis or modification. The SpoIIIE protein is
implicated in intercellular chromosomal DNA transfer.
Length = 201
Score = 30.4 bits (69), Expect = 2.3
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 7/46 (15%)
Query: 433 VIGSSGSGKS----TLAMLLLRLYDPQNGK-ILID--GVDIKELDP 471
+ G++GSGKS TL + L + P+ + LID G ++ L+
Sbjct: 43 IAGATGSGKSTFLNTLILSLAARHSPEEVRLYLIDPKGGELAALED 88
>gnl|CDD|163495 TIGR03783, Bac_Flav_CT_G, Bacteroides conjugation system ATPase,
TraG family. Members of this family include the
predicted ATPase, TraG, encoded by transfer region genes
of conjugative transposons of Bacteroides, such as
CTnDOT, found on the main chromosome. Members also
include TraG homologs borne on plasmids in Bacteroides.
The protein family is related to the conjugative
transfer system ATPase VirB4 [Cellular processes, DNA
transformation].
Length = 829
Score = 31.0 bits (70), Expect = 2.3
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 412 RPDAVILNDLSLK--IQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILI 461
+P + ++DL +K I + ++G SGSGKS L+R Y Q IL+
Sbjct: 420 KPLHLDISDLPMKRGIITNRNKFILGPSGSGKSFFTNHLVRQYYEQGTHILL 471
>gnl|CDD|180177 PRK05636, PRK05636, replicative DNA helicase; Provisional.
Length = 505
Score = 31.0 bits (70), Expect = 2.5
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGK 458
L+DL+ ++ G M V G GKSTLA+ +R ++ K
Sbjct: 255 LDDLTNGLRGGQMIIVAARPGVGKSTLALDFMRSASIKHNK 295
>gnl|CDD|238687 cd01393, recA_like, RecA is a bacterial enzyme which has roles in
homologous recombination, DNA repair, and the induction
of the SOS response. RecA couples ATP hydrolysis to DNA
strand exchange. While prokaryotes have a single RecA
protein, eukaryotes have multiple RecA homologs such as
Rad51, DMC1 and Rad55/57. Archaea have the RecA-like
homologs radA and radB.
Length = 226
Score = 30.2 bits (69), Expect = 2.9
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 425 IQSGSMTSVIGSSGSGKSTLAMLL 448
I +G +T + G GSGK+ L + L
Sbjct: 16 IPTGRITEIFGEFGSGKTQLCLQL 39
>gnl|CDD|222000 pfam13238, AAA_18, AAA domain.
Length = 128
Score = 29.3 bits (66), Expect = 3.1
Identities = 12/43 (27%), Positives = 18/43 (41%)
Query: 433 VIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLR 475
+ G+ GSGK+TLA L + + + ELD
Sbjct: 3 ITGTPGSGKTTLAKELAERLGDVLRDLAKENGLVLELDEEITD 45
>gnl|CDD|238991 cd02034, CooC, The accessory protein CooC, which contains a
nucleotide-binding domain (P-loop) near the N-terminus,
participates in the maturation of the nickel center of
carbon monoxide dehydrogenase (CODH). CODH from
Rhodospirillum rubrum catalyzes the reversible oxidation
of CO to CO2. CODH contains a nickel-iron-sulfur cluster
(C-center) and an iron-sulfur cluster (B-center). CO
oxidation occurs at the C-center. Three accessory
proteins encoded by cooCTJ genes are involved in nickel
incorporation into a nickel site. CooC functions as a
nickel insertase that mobilizes nickel to apoCODH using
energy released from ATP hydrolysis. CooC is a homodimer
and has NTPase activities. Mutation at the P-loop
abolishs its function.
Length = 116
Score = 28.7 bits (65), Expect = 3.4
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 433 VIGSSGSGKSTLAMLLLRLYDPQNGKIL-IDGVDIKELDPMY 473
+ G G GK+T+A LL R + +L ID D +L
Sbjct: 4 ITGKGGVGKTTIAALLARYLAEKGKPVLAIDA-DPDDLPERL 44
>gnl|CDD|148849 pfam07475, Hpr_kinase_C, HPr Serine kinase C-terminal domain. This
family represents the C terminal kinase domain of Hpr
Serine/threonine kinase PtsK. This kinase is the sensor
in a multicomponent phosphorelay system in control of
carbon catabolic repression in bacteria. This kinase in
unusual in that it recognises the tertiary structure of
its target and is a member of a novel family unrelated
to any previously described protein phosphorylating
enzymes. X-ray analysis of the full-length crystalline
enzyme from Staphylococcus xylosus at a resolution of
1.95 A shows the enzyme to consist of two clearly
separated domains that are assembled in a hexameric
structure resembling a three-bladed propeller.
Length = 171
Score = 29.3 bits (67), Expect = 3.8
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 7/43 (16%)
Query: 434 IGSSGSGKSTLAMLLLRLYDPQNGKILI--DGVDIKELDPMYL 474
G SG GKS A+ L+ + G L+ D V+IK + L
Sbjct: 24 TGESGIGKSETALELI-----KRGHRLVADDAVEIKRIGEKTL 61
>gnl|CDD|235385 PRK05277, PRK05277, chloride channel protein; Provisional.
Length = 438
Score = 30.2 bits (69), Expect = 4.0
Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 6/60 (10%)
Query: 305 GVFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSEL 364
G+ FG G+ N ++L ++ + GN ++L +G G L
Sbjct: 224 GIIFGIFGVLFNKLLLRTQD------LFDRLHGGNKKRWVLMGGAVGGLCGLLGLLAPAA 277
>gnl|CDD|177813 PLN02152, PLN02152, indole-3-acetate beta-glucosyltransferase.
Length = 455
Score = 30.0 bits (67), Expect = 4.1
Identities = 47/189 (24%), Positives = 81/189 (42%), Gaps = 25/189 (13%)
Query: 403 NNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAM---LLLRLYDPQNGKI 459
NN F +P+ P SL+I+ + S + S + K+ A+ L+ L + N KI
Sbjct: 151 NNSVFEFPNLP--------SLEIRD--LPSFLSPSNTNKAAQAVYQELMEFLKEESNPKI 200
Query: 460 LIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEAN 519
L++ D E + + I V+ P L + I G ++ D +++
Sbjct: 201 LVNTFDSLEPEFLTAIPNIEMVAVGPLLPA-----EIFTGSESGKDLSVRD------QSS 249
Query: 520 AYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIK-KSKILLLDEATSALDAENEY 578
+Y +D K I G M+ +KQ +ARALI+ K L + +A+ E
Sbjct: 250 SYTLWLDSKTESSVIYVSFGTMVELSKKQIEELARALIEGKRPFLWVITDKLNREAKIEG 309
Query: 579 LVQSAIEKL 587
++ IEK+
Sbjct: 310 EEETEIEKI 318
>gnl|CDD|200328 TIGR03819, heli_sec_ATPase, helicase/secretion neighborhood ATPase.
Members of this protein family comprise a distinct
clade of putative ATPase associated with an integral
membrane complex likely to act in pilus formation,
secretion, or conjugal transfer. The association of most
members with a nearby gene for a DEAH-box helicase
suggests a role in conjugal transfer.
Length = 340
Score = 30.0 bits (68), Expect = 4.3
Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 433 VIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDP 471
V G +GSGK+TL LL L P +L++ D EL P
Sbjct: 183 VSGGTGSGKTTLLSALLALVPPDERIVLVE--DAAELRP 219
>gnl|CDD|233709 TIGR02073, PBP_1c, penicillin-binding protein 1C. This subfamily
of the penicillin binding proteins includes the member
from E. coli designated penicillin-binding protein 1C.
Members have both transglycosylase and transpeptidase
domains and are involved in forming cross-links in the
late stages of peptidoglycan biosynthesis. All members
of this subfamily are presumed to have the same basic
function [Cell envelope, Biosynthesis and degradation of
murein sacculus and peptidoglycan].
Length = 727
Score = 30.1 bits (68), Expect = 4.3
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 435 GSSGSGKSTLAMLLLRLYDPQNGKIL 460
G SG STL M L RL DP+ + L
Sbjct: 79 GRRVSGGSTLTMQLARLLDPELSRTL 104
>gnl|CDD|238026 cd00071, GMPK, Guanosine monophosphate kinase (GMPK, EC 2.7.4.8),
also known as guanylate kinase (GKase), catalyzes the
reversible phosphoryl transfer from adenosine
triphosphate (ATP) to guanosine monophosphate (GMP) to
yield adenosine diphosphate (ADP) and guanosine
diphosphate (GDP). It plays an essential role in the
biosynthesis of guanosine triphosphate (GTP). This
enzyme is also important for the activation of some
antiviral and anticancer agents, such as acyclovir,
ganciclovir, carbovir, and thiopurines.
Length = 137
Score = 28.7 bits (65), Expect = 4.5
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 11/42 (26%)
Query: 435 GSSGSGKSTLAMLLLRLYDPQNGKIL-----------IDGVD 465
G SG GKSTL LL +DP G + +DGVD
Sbjct: 6 GPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGEVDGVD 47
>gnl|CDD|238540 cd01120, RecA-like_NTPases, RecA-like NTPases. This family includes
the NTP binding domain of F1 and V1 H+ATPases, DnaB and
related helicases as well as bacterial RecA and related
eukaryotic and archaeal recombinases. This group also
includes bacterial conjugation proteins and related DNA
transfer proteins involved in type II and type IV
secretion.
Length = 165
Score = 29.0 bits (65), Expect = 4.6
Identities = 31/172 (18%), Positives = 52/172 (30%), Gaps = 45/172 (26%)
Query: 430 MTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFS 489
+ V G +GSGK+TLA+ L + GK++ VDI+E
Sbjct: 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVY--VDIEE--------------------- 37
Query: 490 GTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQR 549
+ +T+ I + K A ++
Sbjct: 38 ------------EIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAE------- 78
Query: 550 IAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLS 601
R +++LDE T + A E E E + +L A +
Sbjct: 79 RLRER---GGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGG 127
>gnl|CDD|223603 COG0529, CysC, Adenylylsulfate kinase and related kinases
[Inorganic ion transport and metabolism].
Length = 197
Score = 29.2 bits (66), Expect = 4.6
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 5/37 (13%)
Query: 435 GSSGSGKSTLAMLL-LRLYDPQNGK--ILIDGVDIKE 468
G SGSGKST+A L +L+ G L+DG +++
Sbjct: 30 GLSGSGKSTIANALEEKLF--AKGYHVYLLDGDNVRH 64
>gnl|CDD|213206 cd03239, ABC_SMC_head, The SMC head domain belongs to the
ATP-binding cassette superfamily. The structural
maintenance of chromosomes (SMC) proteins are essential
for successful chromosome transmission during
replication and segregation of the genome in all
organisms. SMCs are generally present as single proteins
in bacteria, and as at least six distinct proteins in
eukaryotes. The proteins range in size from
approximately 110 to 170 kDa, and each has five distinct
domains: amino- and carboxy-terminal globular domains,
which contain sequences characteristic of ATPases, two
coiled-coil regions separating the terminal domains ,
and a central flexible hinge. SMC proteins function
together with other proteins in a range of chromosomal
transactions, including chromosome condensation,
sister-chromatid cohesion, recombination, DNA repair,
and epigenetic silencing of gene expression.
Length = 178
Score = 29.2 bits (66), Expect = 4.8
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Query: 536 GERGIMLSGGQKQRIAIARAL----IKKSKILLLDEATSALDAENE 577
G+ +LSGG+K A+A IK S +LDE +ALD N
Sbjct: 89 GKVEQILSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNR 134
>gnl|CDD|206747 cd01854, YjeQ_EngC, Ribosomal interacting GTPase YjeQ/EngC, a
circularly permuted subfamily of the Ras GTPases. YjeQ
(YloQ in Bacillus subtilis) is a ribosomal small
subunit-dependent GTPase; hence also known as RsgA. YjeQ
is a late-stage ribosomal biogenesis factor involved in
the 30S subunit maturation, and it represents a protein
family whose members are broadly conserved in bacteria
and have been shown to be essential to the growth of E.
coli and B. subtilis. Proteins of the YjeQ family
contain all sequence motifs typical of the vast class of
P-loop-containing GTPases, but show a circular
permutation, with a G4-G1-G3 pattern of motifs as
opposed to the regular G1-G3-G4 pattern seen in most
GTPases. All YjeQ family proteins display a unique
domain architecture, which includes an N-terminal
OB-fold RNA-binding domain, the central permuted GTPase
domain, and a zinc knuckle-like C-terminal cysteine
domain.
Length = 211
Score = 29.3 bits (67), Expect = 5.1
Identities = 11/15 (73%), Positives = 12/15 (80%), Gaps = 1/15 (6%)
Query: 431 TSV-IGSSGSGKSTL 444
TSV +G SG GKSTL
Sbjct: 87 TSVLVGQSGVGKSTL 101
>gnl|CDD|183131 PRK11427, PRK11427, multidrug efflux system protein MdtO;
Provisional.
Length = 683
Score = 29.8 bits (67), Expect = 5.5
Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 6/61 (9%)
Query: 85 CLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVYL 144
CLL++ S+T +PF + + Y K + ++FVV G ++L
Sbjct: 40 CLLVILISMTFEIPFLALSLAVLFYGIQSNAFYTKFVA------ILFVVATVLEIGSLFL 93
Query: 145 M 145
+
Sbjct: 94 I 94
>gnl|CDD|224287 COG1368, MdoB, Phosphoglycerol transferase and related proteins,
alkaline phosphatase superfamily [Cell envelope
biogenesis, outer membrane].
Length = 650
Score = 29.7 bits (67), Expect = 5.5
Identities = 24/146 (16%), Positives = 48/146 (32%), Gaps = 20/146 (13%)
Query: 295 ELAKKEALAKGVFFGFTGLSGNAIIL-----SVLYYGGVMVSYETITVGNLSSFLLYAAY 349
L K AL F F G + L ++Y+ G ++ + L
Sbjct: 3 WLNKTLALLSLFFPIFLGFGILLVFLLWLLTLLIYFLGFVLPILLL-FQGLRLLFSLPIL 61
Query: 350 IGISIGGLSNFYSELNKGLGACHRLWEIMEREPLISTSGGKFFSHSLKGEIDFNNIRFSY 409
+S+ L + ++ L ++ S L +I F +
Sbjct: 62 FIVSLLLLLLLFKGVDALNIFRLILALLI--------------SILLILDILFYRFFIDF 107
Query: 410 PSRPDAVILNDLSLKIQSGSMTSVIG 435
+ P+A+++ D +L S S++
Sbjct: 108 LTIPNALLIEDFNLGKLGFSALSLLY 133
>gnl|CDD|234457 TIGR04075, bacter_Pnkp, polynucleotide kinase-phosphatase. Members
of this protein family are the bacterial polynucleotide
kinase-phosphatase (Pnkp) whose genes occur paired with
genes for the 3' terminal RNA ribose
2'-O-methyltransferase Hen1. All members of the seed
alignment belong to a cassette with the Hen1. The pair
acts in bacterial RNA repair. This enzyme performs
end-healing reactions on broken RNA, preparing from the
RNA ligase to close the break. The working hypothesis is
that the combination of Pnkp (RNA repair) and Hen1 (RNA
modification) serves to first repair RNA damage from
ribotoxins and then perform a modification that prevents
the damage from recurring [Transcription, RNA
processing].
Length = 851
Score = 30.0 bits (68), Expect = 5.6
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 422 SLKIQSGSMTSVIGSSGSGKSTLA 445
+ I S+ ++G+SGSGKST A
Sbjct: 2 KITIPELSLVVLVGASGSGKSTFA 25
>gnl|CDD|180120 PRK05506, PRK05506, bifunctional sulfate adenylyltransferase
subunit 1/adenylylsulfate kinase protein; Provisional.
Length = 632
Score = 29.5 bits (67), Expect = 5.8
Identities = 11/16 (68%), Positives = 13/16 (81%)
Query: 435 GSSGSGKSTLAMLLLR 450
G SGSGKST+A L+ R
Sbjct: 467 GLSGSGKSTIANLVER 482
>gnl|CDD|238985 cd02027, APSK, Adenosine 5'-phosphosulfate kinase (APSK) catalyzes
the phosphorylation of adenosine 5'-phosphosulfate to
form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The
end-product PAPS is a biologically "activated" sulfate
form important for the assimilation of inorganic
sulfate.
Length = 149
Score = 28.6 bits (65), Expect = 5.9
Identities = 10/14 (71%), Positives = 11/14 (78%)
Query: 435 GSSGSGKSTLAMLL 448
G SGSGKST+A L
Sbjct: 6 GLSGSGKSTIARAL 19
>gnl|CDD|238542 cd01122, GP4d_helicase, GP4d_helicase is a homohexameric 5'-3'
helicases. Helicases couple NTP hydrolysis to the
unwinding of nucleic acid duplexes into their component
strands.
Length = 271
Score = 29.3 bits (66), Expect = 5.9
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTL 444
LN L+ ++ G + + +G GK+T
Sbjct: 20 LNKLTKGLRKGELIILTAGTGVGKTTF 46
>gnl|CDD|224393 COG1476, COG1476, Predicted transcriptional regulators
[Transcription].
Length = 68
Score = 26.8 bits (60), Expect = 6.3
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 7/54 (12%)
Query: 253 QDKLANAVQVAEERISNIRTVKSFSQEKLEMS-----HFNAKMDDLFELAKKEA 301
Q++LA V V+ + I I K LE++ F ++D+F+L + EA
Sbjct: 17 QEELAKLVGVSRQTIIAIEKGK--YNPSLELALKIARVFGKTIEDIFQLEEDEA 68
>gnl|CDD|237215 PRK12815, carB, carbamoyl phosphate synthase large subunit; Reviewed.
Length = 1068
Score = 29.6 bits (67), Expect = 6.3
Identities = 25/115 (21%), Positives = 39/115 (33%), Gaps = 4/115 (3%)
Query: 482 SQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIM 541
E + Y I V D K ++ A+ GF + G + E GI
Sbjct: 926 GYEASDLHIPSYGTIFISVRDED---KPEVTKLARRFAQLGFKLLATEGTANWLAEEGIT 982
Query: 542 LSGGQKQRIAIARAL-IKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLT 595
+K + L K ++L TS D+ +E ++ E L V T
Sbjct: 983 TGVVEKVQEGSPSLLERIKQHRIVLVVNTSLSDSASEDAIKIRDEALSTHIPVFT 1037
>gnl|CDD|129694 TIGR00606, rad50, rad50. All proteins in this family for which
functions are known are involvedin recombination,
recombinational repair, and/or non-homologous end
joining.They are components of an exonuclease complex
with MRE11 homologs. This family is distantly related to
the SbcC family of bacterial proteins.This family is
based on the phylogenomic analysis of JA Eisen (1999,
Ph.D. Thesis, Stanford University).
Length = 1311
Score = 29.6 bits (66), Expect = 6.6
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 8/69 (11%)
Query: 514 AAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQ------RIAIARALIKKSKILLLDE 567
A+ + Y + + G DT + RG S GQK R+A+A I+ LDE
Sbjct: 1174 ASDKRRNYNYRVVMLKG-DTALDMRG-RCSAGQKVLASLIIRLALAETFCLNCGIIALDE 1231
Query: 568 ATSALDAEN 576
T+ LD EN
Sbjct: 1232 PTTNLDREN 1240
>gnl|CDD|238979 cd02021, GntK, Gluconate kinase (GntK) catalyzes the phosphoryl
transfer from ATP to gluconate. The resulting product
gluconate-6-phoshate is an important precursor of
gluconate metabolism. GntK acts as a dimmer composed of
two identical subunits.
Length = 150
Score = 28.4 bits (64), Expect = 7.1
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 433 VIGSSGSGKSTLAMLLLR 450
V+G SGSGKST+ L
Sbjct: 4 VMGVSGSGKSTVGKALAE 21
>gnl|CDD|227038 COG4694, COG4694, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 758
Score = 29.5 bits (66), Expect = 7.2
Identities = 28/113 (24%), Positives = 48/113 (42%), Gaps = 16/113 (14%)
Query: 539 GIMLSGGQKQRIAIARALIK--------KSKILLLDEATSALDAENEYLVQSAIEKLI-E 589
G LS G+K IA L K K+K++++D+ S+ D+ + V +++
Sbjct: 527 GNTLSEGEKTFIAFLYFLAKLKENPDISKNKVVVIDDPISSFDSNILFRVSVLVKEEKTN 586
Query: 590 GKTVLTIAHRLSTIRKSNQICVL---DKGKIVEIGSYAHLIKNPNSMFNKLMK 639
K V+ + H R L +KGK S+ + K+ N K+ K
Sbjct: 587 IKQVIVLTHNTYFYRDITLELDLKRYNKGKY----SFWIIKKDNNVSKIKVYK 635
>gnl|CDD|206733 cd04170, EF-G_bact, Elongation factor G (EF-G) family.
Translocation is mediated by EF-G (also called
translocase). The structure of EF-G closely resembles
that of the complex between EF-Tu and tRNA. This is an
example of molecular mimicry; a protein domain evolved
so that it mimics the shape of a tRNA molecule. EF-G in
the GTP form binds to the ribosome, primarily through
the interaction of its EF-Tu-like domain with the 50S
subunit. The binding of EF-G to the ribosome in this
manner stimulates the GTPase activity of EF-G. On GTP
hydrolysis, EF-G undergoes a conformational change that
forces its arm deeper into the A site on the 30S
subunit. To accommodate this domain, the peptidyl-tRNA
in the A site moves to the P site, carrying the mRNA and
the deacylated tRNA with it. The ribosome may be
prepared for these rearrangements by the initial binding
of EF-G as well. The dissociation of EF-G leaves the
ribosome ready to accept the next aminoacyl-tRNA into
the A site. This group contains only bacterial members.
Length = 268
Score = 29.1 bits (66), Expect = 7.2
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 432 SVIGSSGSGKSTLAMLLLR 450
+++G SGSGK+TLA LL
Sbjct: 3 ALVGHSGSGKTTLAEALLY 21
>gnl|CDD|222036 pfam13304, AAA_21, AAA domain.
Length = 256
Score = 29.0 bits (64), Expect = 7.4
Identities = 28/194 (14%), Positives = 53/194 (27%), Gaps = 3/194 (1%)
Query: 430 MTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTL-F 488
+ +IG +GSGKS L L L + + +D + + +
Sbjct: 1 LNVIIGPNGSGKSNLLKALALLLLLLSLGLTLDRGLNVGIKLLPFLLDENEIEIPLEFEI 60
Query: 489 SGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQ 548
+ + I Y + K DI+ G + F+ E+ +
Sbjct: 61 EEFLIDGIRY--RYGFELDKEDILEELLYEYRKGEELLFERERSKESFEKSPEKKRELRG 118
Query: 549 RIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQ 608
+ L LL + L + L + + + +
Sbjct: 119 LREVLLLLNLSLSSFLLLASLEILLSILLPFSFILGNLRNLRNIELKLLDLVKRLFLESD 178
Query: 609 ICVLDKGKIVEIGS 622
+ L K I I
Sbjct: 179 LLRLLKLLIKGISD 192
>gnl|CDD|238543 cd01123, Rad51_DMC1_radA, Rad51_DMC1_radA,B. This group of
recombinases includes the eukaryotic proteins RAD51,
RAD55/57 and the meiosis-specific protein DMC1, and the
archaeal proteins radA and radB. They are closely
related to the bacterial RecA group. Rad51 proteins
catalyze a similiar recombination reaction as RecA,
using ATP-dependent DNA binding activity and a
DNA-dependent ATPase. However, this reaction is less
efficient and requires accessory proteins such as
RAD55/57 .
Length = 235
Score = 28.7 bits (65), Expect = 7.6
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 425 IQSGSMTSVIGSSGSGKSTLAMLL 448
I++GS+T + G GSGK+ L L
Sbjct: 16 IETGSITEIFGEFGSGKTQLCHQL 39
>gnl|CDD|226751 COG4301, COG4301, Uncharacterized conserved protein [Function
unknown].
Length = 321
Score = 29.0 bits (65), Expect = 7.9
Identities = 16/60 (26%), Positives = 27/60 (45%)
Query: 409 YPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKE 468
YP+R +A IL + +I S + + GSG ST +LL + + +D+
Sbjct: 57 YPTRTEAAILQARAAEIASITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSA 116
>gnl|CDD|217416 pfam03193, DUF258, Protein of unknown function, DUF258.
Length = 161
Score = 28.3 bits (64), Expect = 7.9
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 427 SGSMTSVIGSSGSGKSTLAMLLL 449
G + + G SG GKSTL LL
Sbjct: 34 KGKTSVLAGQSGVGKSTLLNALL 56
>gnl|CDD|205922 pfam13748, ABC_membrane_3, ABC transporter transmembrane region.
This family represents a unit of six transmembrane
helices.
Length = 237
Score = 28.8 bits (65), Expect = 8.0
Identities = 35/187 (18%), Positives = 72/187 (38%), Gaps = 28/187 (14%)
Query: 69 LFTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLM 128
L +AK ++L L+L + + + P +G ID I D T +L+
Sbjct: 1 LKRIAKKHPKRLALTFLLVLAENVLLLLYPLFIGFAIDAILAGD--------TQQALIYA 52
Query: 129 LVFVVGACCNFGRVYLMNVSAQSITKKLRERLFGSIISQE--TAYFDKHKTGELINRISA 186
V ++ L + A + + R F I ++ + + G ++ I+A
Sbjct: 53 AVVLL----------LWLIGA--ARRIVDTRTFTRIYAELAVPVILAQRQQGLDVSTIAA 100
Query: 187 DTSLVSQCVT---QNISDGLRSTVMVSAGVSMMFIISSKLALISLIIVPPVAGLAIVYGK 243
+L + V ++ + S V + M+ + L L +L+I + + ++
Sbjct: 101 RVALSREFVDFFEIHLPILITSVVSIVGAAIMLLVFEFWLGLAALLI---LLVMLLILPL 157
Query: 244 FVRKITR 250
F R+ R
Sbjct: 158 FARRNER 164
>gnl|CDD|165342 PHA03049, PHA03049, IMV membrane protein; Provisional.
Length = 68
Score = 26.7 bits (59), Expect = 8.1
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 8/64 (12%)
Query: 225 LISLIIVPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMS 284
+I +II + GL IVYG + +K T + E+ + +K+ +KL+ S
Sbjct: 5 IILVIICVVIIGL-IVYGIYNKKTTTSQNPPSQ-------EKYEKMEDLKTGYVDKLKSS 56
Query: 285 HFNA 288
H N+
Sbjct: 57 HLNS 60
>gnl|CDD|216586 pfam01583, APS_kinase, Adenylylsulphate kinase. Enzyme that
catalyzes the phosphorylation of adenylylsulphate to
3'-phosphoadenylylsulfate. This domain contains an ATP
binding P-loop motif.
Length = 157
Score = 28.4 bits (64), Expect = 8.1
Identities = 11/16 (68%), Positives = 12/16 (75%)
Query: 435 GSSGSGKSTLAMLLLR 450
G SGSGKST+A L R
Sbjct: 9 GLSGSGKSTIANALER 24
>gnl|CDD|218852 pfam06008, Laminin_I, Laminin Domain I. coiled-coil structure. It
has been suggested that the domains I and II from
laminin A, B1 and B2 may come together to form a triple
helical coiled-coil structure.
Length = 263
Score = 28.9 bits (65), Expect = 8.4
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 13/68 (19%)
Query: 250 RNVQDKLANAVQV---AEERISNIRTVKSFSQEKLE---------MSHFNAKMDDLFELA 297
R+ Q +L NA AEE ++ ++T QE+ E ++ + AK+ DL EL
Sbjct: 141 RDFQKQLQNAEAELKAAEELLNRVQTWFQTPQEENEGLFEALRDDLNEYEAKLSDLRELL 200
Query: 298 KKEALAKG 305
EA AK
Sbjct: 201 -DEAQAKT 207
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 29.3 bits (66), Expect = 8.7
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 7/46 (15%)
Query: 537 ERGI-MLSGGQKQ------RIAIARALIKKSKILLLDEATSALDAE 575
ER + LSGG++ R+A++ L +L+LDE T LD E
Sbjct: 783 ERPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEE 828
>gnl|CDD|227352 COG5019, CDC3, Septin family protein [Cell division and chromosome
partitioning / Cytoskeleton].
Length = 373
Score = 28.8 bits (65), Expect = 9.2
Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 7/55 (12%)
Query: 433 VIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTL 487
V+G SG GK+T L G L+D +I ++ + + L
Sbjct: 28 VVGESGLGKTTFINTLF-------GTSLVDETEIDDIRAEGTSPTLEIKITKAEL 75
>gnl|CDD|213239 cd03272, ABC_SMC3_euk, ATP-binding cassette domain of eukaryotic
SMC3 proteins. The structural maintenance of
chromosomes (SMC) proteins are large (approximately 110
to 170 kDa), and each is arranged into five recognizable
domains. Amino-acid sequence homology of SMC proteins
between species is largely confined to the amino- and
carboxy-terminal globular domains. The amino-terminal
domain contains a 'Walker A' nucleotide-binding domain
(GxxGxGKS/T, in the single-letter amino-acid code),
which by mutational studies has been shown to be
essential in several proteins. The carboxy-terminal
domain contains a sequence (the DA-box) that resembles a
'Walker B' motif, and a motif with homology to the
signature sequence of the ATP-binding cassette (ABC)
family of ATPases. The sequence homology within the
carboxy-terminal domain is relatively high within the
SMC1-SMC4 group, whereas SMC5 and SMC6 show some
divergence in both of these sequences. In eukaryotic
cells, the proteins are found as heterodimers of SMC1
paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6
(formerly known as Rad18).
Length = 243
Score = 28.4 bits (64), Expect = 9.9
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Query: 542 LSGGQKQRIAIARAL-IKK---SKILLLDEATSALDAENEYLVQSAIEKL 587
LSGGQK +A+A I+K + L DE +ALDA+ V + I++L
Sbjct: 159 LSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKEL 208
>gnl|CDD|184905 PRK14941, PRK14941, DNA polymerase III subunit beta; Provisional.
Length = 374
Score = 28.9 bits (65), Expect = 10.0
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Query: 588 IEGKTVLTIA---HRLSTIRKSNQICVLDKGKIV 618
+EG T+ ++ HRL RK++ + V +K KIV
Sbjct: 165 LEGNTITAVSTDGHRLVRCRKNSSVGVEEKQKIV 198
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.135 0.371
Gapped
Lambda K H
0.267 0.0534 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 32,139,460
Number of extensions: 3217152
Number of successful extensions: 5146
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4645
Number of HSP's successfully gapped: 684
Length of query: 644
Length of database: 10,937,602
Length adjustment: 103
Effective length of query: 541
Effective length of database: 6,369,140
Effective search space: 3445704740
Effective search space used: 3445704740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.1 bits)