RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5743
(644 letters)
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial;
membrane protein, mitochondrial transport; HET: ACP LMT
CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Length = 595
Score = 810 bits (2095), Expect = 0.0
Identities = 321/582 (55%), Positives = 430/582 (73%), Gaps = 1/582 (0%)
Query: 64 SELKKLFTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSL 123
E +KL LA E+R+L AV L +SS I+M+ PF LGK+IDVIYT+ + + +T L
Sbjct: 5 PEARKLLGLAYPERRRLAAAVGFLTMSSVISMSAPFFLGKIIDVIYTNPTVDYSDNLTRL 64
Query: 124 SLLLMLVFVVGACCNFGRVYLMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELINR 183
L L VF+ GA N RVYLM S Q I +LR LF SI+ QE A+FDK +TGELINR
Sbjct: 65 CLGLSAVFLCGAAANAIRVYLMQTSGQRIVNRLRTSLFSSILRQEVAFFDKTRTGELINR 124
Query: 184 ISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLALISLIIVPPVAGLAIVYGK 243
+S+DT+L+ + VT+N+SDGLR+ S G+SMMF +S LA L +VPPV+ +A++YG+
Sbjct: 125 LSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYGR 184
Query: 244 FVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALA 303
++RK+T+ QD LA A Q+AEERI N+RTV++F +E E+ + +K+D + +LA+KEA A
Sbjct: 185 YLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFA 244
Query: 304 KGVFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSE 363
+ FFG TGLSGN I+LSVLY GG+++ +TVG LSSFL+YA ++GISIGGLS+FYSE
Sbjct: 245 RAGFFGATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSE 304
Query: 364 LNKGLGACHRLWEIMEREPLI-STSGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLS 422
L KGLGA RLWE++EREP + G S +G ++F N+ F+YP+RP+ I D S
Sbjct: 305 LMKGLGAGGRLWELLEREPKLPFNEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFS 364
Query: 423 LKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVS 482
L I SGS+T+++G SGSGKST+ LLLRLYDP +G I +DG DI++L+P++LRS+IG+VS
Sbjct: 365 LSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVS 424
Query: 483 QEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIML 542
QEP LFS +I ENI YG +D SSVT +I A+ ANA F+ +F GF+T+VGE+G++L
Sbjct: 425 QEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLL 484
Query: 543 SGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLST 602
SGGQKQRIAIARAL+K KILLLDEATSALDAENEYLVQ A+++L++G+TVL IAHRLST
Sbjct: 485 SGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLST 544
Query: 603 IRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLMKYQTMD 644
I+ +N + VLD+GKI E G + L+ PN ++ KLM Q+
Sbjct: 545 IKNANMVAVLDQGKITEYGKHEELLSKPNGIYRKLMNKQSFI 586
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; HET: ANP; 3.70A {Salmonella
typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A*
3b5z_A* 3b5w_A
Length = 582
Score = 587 bits (1516), Expect = 0.0
Identities = 171/564 (30%), Positives = 303/564 (53%), Gaps = 8/564 (1%)
Query: 66 LKKLFTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSL 125
++L+ K L A L+++++ + L ++D + + + + + L
Sbjct: 13 FRRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSV---LLWMPL 69
Query: 126 LLMLVFVVGACCNFGRVYLMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELINRIS 185
+++ + ++ ++ Y ++ + + +R RLFG ++ A+FDK TG L++RI+
Sbjct: 70 VVIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRIT 129
Query: 186 ADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLALISLIIVPPVAGLAIVYGKFV 245
D+ V+ + + +R + MMF S +L++I +++ P V+ V K
Sbjct: 130 YDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRF 189
Query: 246 RKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAKG 305
R I++N+Q+ + AE+ + + V F +++E F+ + + K A
Sbjct: 190 RSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASS 249
Query: 306 VFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSELN 365
+ L + + VLY +++T G ++ + + L+N ++
Sbjct: 250 ISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQ 309
Query: 366 KGLGACHRLWEIMEREPLISTSGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKI 425
+G+ AC L+ I++ E GK G+++F N+ F+YP R + L +++LKI
Sbjct: 310 RGMAACQTLFAILDSEQEKDE--GKRVIDRATGDLEFRNVTFTYPGR-EVPALRNINLKI 366
Query: 426 QSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEP 485
+G +++G SGSGKST+A L+ R YD G IL+DG D++E LR+Q+ VSQ
Sbjct: 367 PAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNV 426
Query: 486 TLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGG 545
LF+ T+ NI Y + ++ I AA+ A A F+ NG DTI+GE G++LSGG
Sbjct: 427 HLFNDTVANNIAYARTE--EYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGG 484
Query: 546 QKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRK 605
Q+QRIAIARAL++ S IL+LDEATSALD E+E +Q+A+++L + +T L IAHRLSTI +
Sbjct: 485 QRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQ 544
Query: 606 SNQICVLDKGKIVEIGSYAHLIKN 629
+++I V++ G IVE G+++ L+
Sbjct: 545 ADEIVVVEDGIIVERGTHSELLAQ 568
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; 5.50A {Vibrio cholerae}
Length = 582
Score = 569 bits (1470), Expect = 0.0
Identities = 166/564 (29%), Positives = 301/564 (53%), Gaps = 8/564 (1%)
Query: 66 LKKLFTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSL 125
K+L+T + K L + L+++++ + L ++D + + + + L
Sbjct: 13 FKRLWTYIRLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAESNF---LRILPF 69
Query: 126 LLMLVFVVGACCNFGRVYLMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELINRIS 185
+++ + V F Y ++ + ++ ++R RLF + +FD+ TG L++RI+
Sbjct: 70 MILGLMFVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRIT 129
Query: 186 ADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLALISLIIVPPVAGLAIVYGKFV 245
D+ V+ ++ + +R + +++MF S +L+L+ +++ P VA K
Sbjct: 130 YDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSKRF 189
Query: 246 RKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAKG 305
RKI+RN+Q + + AE+ + + V S+ +++E F+ + + + K A+
Sbjct: 190 RKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQS 249
Query: 306 VFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSELN 365
+ + + + +VL+ V +T G + + + L++ SE
Sbjct: 250 IADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQ 309
Query: 366 KGLGACHRLWEIMEREPLISTSGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKI 425
+G+ AC L+ +M+ E GK+ + + GE+D ++ F+Y + + L+ +S I
Sbjct: 310 RGMAACQTLFGLMDLETERDN--GKYEAERVNGEVDVKDVTFTYQGK-EKPALSHVSFSI 366
Query: 426 QSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEP 485
G +++G SGSGKST+A L R YD +G I +DG D+++ LR VSQ
Sbjct: 367 PQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNV 426
Query: 486 TLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGG 545
LF+ TI NI Y T+ I AA++A+A F+ + G DT++GE G LSGG
Sbjct: 427 HLFNDTIANNIAYAAE--GEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGG 484
Query: 546 QKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRK 605
Q+QR+AIARAL++ + +L+LDEATSALD E+E +Q+A+++L + KTVL IAHRLSTI +
Sbjct: 485 QRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQ 544
Query: 606 SNQICVLDKGKIVEIGSYAHLIKN 629
+++I V+D+G+I+E G +A L+
Sbjct: 545 ADEILVVDEGEIIERGRHADLLAQ 568
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION
channel, transport protein, casse protein; 2.00A {Homo
sapiens} PDB: 2onj_A* 2hyd_A
Length = 578
Score = 561 bits (1447), Expect = 0.0
Identities = 172/568 (30%), Positives = 292/568 (51%), Gaps = 8/568 (1%)
Query: 66 LKKLFTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYT----SDKKEMKEKMT 121
+K+ K K ++ + + ++ I M +P + ID + + +++
Sbjct: 2 IKRYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTI 61
Query: 122 SLSLLLMLVFVVGACCNFGRVYLMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELI 181
++ + L + +V F R YL ++ I +R++L+ + + ++ ++ G++I
Sbjct: 62 AIGIALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVI 121
Query: 182 NRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLALISLIIVPPVAGLAIVY 241
+R+ D + + + + + +S+MF + KL L +L I P V+
Sbjct: 122 SRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVF 181
Query: 242 GKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEA 301
+RK+TR LA ER+ I VKSF+ E E +F+ K + A K
Sbjct: 182 FGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHT 241
Query: 302 LAKGVFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFY 361
F + + V+ G + +ITVG L++F+ Y + + L +
Sbjct: 242 RWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASF 301
Query: 362 SELNKGLGACHRLWEIMEREPLISTSGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDL 421
+ L + + R++++++ + I G +G ID +++ F Y + L D+
Sbjct: 302 TTLTQSFASMDRVFQLIDEDYDIKNGVGAQPIEIKQGRIDIDHVSFQYNDNEAPI-LKDI 360
Query: 422 SLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSV 481
+L I+ G + +G SG GKSTL L+ R YD +G+ILIDG +IK+ LR+QIG V
Sbjct: 361 NLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLV 420
Query: 482 SQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIM 541
Q+ LFS T+ ENIL G T +++ AAK ANA+ F+++ G+DT VGERG+
Sbjct: 421 QQDNILFSDTVKENILLGRPT---ATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVK 477
Query: 542 LSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLS 601
LSGGQKQR++IAR + IL+LDEATSALD E+E ++Q A++ L + +T L +AHRLS
Sbjct: 478 LSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLS 537
Query: 602 TIRKSNQICVLDKGKIVEIGSYAHLIKN 629
TI +++I V++ G IVE G++ LI
Sbjct: 538 TITHADKIVVIENGHIVETGTHRELIAK 565
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic
peptide, membrane protein; 3.80A {Mus musculus} PDB:
3g61_A* 3g60_A*
Length = 1284
Score = 580 bits (1498), Expect = 0.0
Identities = 187/630 (29%), Positives = 327/630 (51%), Gaps = 6/630 (0%)
Query: 19 NKSLAFKIISHKPFSKWKLQNNEKIISRYYTSTPNNQKVGTKIKKSELKKLFTLAKSEKR 78
N ++ K + + + + + + + ++ L +E
Sbjct: 646 NLDMSSKDSGSSLIRRRSTRKSICGPHDQDRKLSTKEALDEDVPPASFWRILKLNSTEWP 705
Query: 79 KLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKE-MKEKMTSLSLLLMLVFVVGACC 137
+ +++ + A KV+ V E ++ SLL +++ ++
Sbjct: 706 YFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQNSNLFSLLFLILGIISFIT 765
Query: 138 NFGRVYLMNVSAQSITKKLRERLFGSIISQETAYFD--KHKTGELINRISADTSLVSQCV 195
F + + + + +TK+LR +F S++ Q+ ++FD K+ TG L R++ D + V
Sbjct: 766 FFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGAT 825
Query: 196 TQNISDGLRSTVMVSAGVSMMFIISSKLALISLIIVPPVAGLAIVYGKFVRKITRNVQDK 255
++ ++ + G+ + I +L L+ L IVP +A +V K + + +
Sbjct: 826 GSRLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKE 885
Query: 256 LANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAKGVFFGFTGLSG 315
L + ++A E I N RTV S ++E+ + + + + A K+A G+ F FT
Sbjct: 886 LEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMM 945
Query: 316 NAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSELNKGLGACHRLW 375
+ +G +V+ + +T N+ + +++G +S+F + K + +
Sbjct: 946 YFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHII 1005
Query: 376 EIMEREPLI-STSGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVI 434
I+E+ P I S S + L+G + F+ + F+YP+RP +L LSL+++ G +++
Sbjct: 1006 RIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALV 1065
Query: 435 GSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYE 494
GSSG GKST+ LL R YDP G + +DG +IK+L+ +LR+Q+G VSQEP LF +I E
Sbjct: 1066 GSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAE 1125
Query: 495 NILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIAR 554
NI YG N V+ +I+ AAKEAN + F+ + ++T VG++G LSGGQKQRIAIAR
Sbjct: 1126 NIAYGDNSRV-VSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIAR 1184
Query: 555 ALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDK 614
AL+++ ILLLDEATSALD E+E +VQ A++K EG+T + IAHRLSTI+ ++ I V+
Sbjct: 1185 ALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQN 1244
Query: 615 GKIVEIGSYAHLIKNPNSMFNKLMKYQTMD 644
GK+ E G++ L+ ++ ++ Q
Sbjct: 1245 GKVKEHGTHQQLLAQ-KGIYFSMVSVQAGA 1273
Score = 576 bits (1487), Expect = 0.0
Identities = 200/542 (36%), Positives = 305/542 (56%), Gaps = 9/542 (1%)
Query: 106 DVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVYLMNVSAQSITKKLRERLFGSII 165
+ + +++E+MT+ + + + +V ++A K+R++ F +I+
Sbjct: 93 EADKRAMFAKLEEEMTTYAYYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIM 152
Query: 166 SQETAYFDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLAL 225
+QE +FD H GEL R++ D S +++ + I ++ G + F KL L
Sbjct: 153 NQEIGWFDVHDVGELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGWKLTL 212
Query: 226 ISLIIVPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSH 285
+ L I P + A ++ K + T A A VAEE ++ IRTV +F +K E+
Sbjct: 213 VILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELER 272
Query: 286 FNAKMDDLFELAKKEALAKGVFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLL 345
+N +++ L K+A+ + G L A +YG +V + ++G + +
Sbjct: 273 YNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFF 332
Query: 346 YAAYIGISIGGLSNFYSELNKGLGACHRLWEIMEREPLI---STSGGKFFSHSLKGEIDF 402
S+G S GA + +++I++ +P I S SG K +++G ++F
Sbjct: 333 SVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKP--DNIQGNLEF 390
Query: 403 NNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILID 462
NI FSYPSR + IL L+LK++SG +++G+SG GKST L+ RLYDP +G + ID
Sbjct: 391 KNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSID 450
Query: 463 GVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYG 522
G DI+ ++ YLR IG VSQEP LF+ TI ENI YG D VT +I A KEANAY
Sbjct: 451 GQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGRED---VTMDEIEKAVKEANAYD 507
Query: 523 FVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQS 582
F++ + FDT+VGERG LSGGQKQRIAIARAL++ KILLLDEATSALD E+E +VQ+
Sbjct: 508 FIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQA 567
Query: 583 AIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLMKYQT 642
A++K EG+T + IAHRLST+R ++ I D G IVE G++ L++ ++ KL+ QT
Sbjct: 568 ALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMRE-KGIYFKLVMTQT 626
Query: 643 MD 644
Sbjct: 627 AG 628
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288;
multidrug transporter, transport protein; HET: ANP;
2.90A {Thermotoga maritima}
Length = 598
Score = 469 bits (1210), Expect = e-159
Identities = 175/577 (30%), Positives = 304/577 (52%), Gaps = 9/577 (1%)
Query: 52 PNNQKVGTKIKKSELKKLFTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTS 111
P +K K + L++L + L + VSS + + P+ +GK IDV++
Sbjct: 11 PILEKPALKNPTATLRRLLGYLRPHTFTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVP 70
Query: 112 DKKEMKEKMTSLSLLLMLVFVVGACCNFGRVYLMNVSAQSITKKLRERLFGSIISQETAY 171
+ + + L+L ++ + + + + +M +Q + +LR+ LF + +
Sbjct: 71 RRFD---LLPRYMLILGTIYALTSLLFWLQGKIMLTLSQDVVFRLRKELFEKLQRVPVGF 127
Query: 172 FDKHKTGELINRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLALISLIIV 231
FD+ G++I+R+ D ++ + +I V ++ V MMF ++ L+L++L IV
Sbjct: 128 FDRTPHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSLVTLSIV 187
Query: 232 PPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMD 291
P + + RK Q L + EE IS + +K F++E+ EM F+ +
Sbjct: 188 PLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNE 247
Query: 292 DLFELAKKEALAKGVFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIG 351
L ++ K + GV + N + +GG + + ITVG +++F+ Y+
Sbjct: 248 SLRKVGTKAQIFSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFT 307
Query: 352 ISIGGLSNFYSELNKGLGACHRLWEIMEREPLISTSGGKFFSHSLKGEIDFNNIRFSYPS 411
+ LSN ++ + L + R++EI++ E ++GEI+F N+ FSY
Sbjct: 308 RPLNELSNQFNMIQMALASAERIFEILDLEEEKDDPDAVELRE-VRGEIEFKNVWFSY-- 364
Query: 412 RPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDP 471
+L D++ I+ G +++G +GSGK+T+ LL+R YD G+IL+DG+DI+++
Sbjct: 365 DKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKR 424
Query: 472 MYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGF 531
LRS IG V Q+ LFS T+ EN+ YG T +I AAK ++ F+ G+
Sbjct: 425 SSLRSSIGIVLQDTILFSTTVKENLKYGNPG---ATDEEIKEAAKLTHSDHFIKHLPEGY 481
Query: 532 DTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGK 591
+T++ + G LS GQ+Q +AI RA + KIL+LDEATS +D + E +Q+A+ KL+EGK
Sbjct: 482 ETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGK 541
Query: 592 TVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIK 628
T + IAHRL+TI+ ++ I VL G+IVE+G + LI+
Sbjct: 542 TSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQ 578
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter,
transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Length = 587
Score = 433 bits (1116), Expect = e-145
Identities = 152/565 (26%), Positives = 285/565 (50%), Gaps = 9/565 (1%)
Query: 66 LKKLFTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVID-VIYTSDKKEMKEKMTSLS 124
K L K A ++V ++ P L +++D I D +
Sbjct: 11 SKTLARYLKPYWIFAVLAPLFMVVEVICDLSQPTLLARIVDEGIARGDF----SLVLKTG 66
Query: 125 LLLMLVFVVGACCNFGRVYLMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELINRI 184
+L+++V ++GA G + ++Q+ LR LF ++S + ++ T LI R+
Sbjct: 67 ILMLIVALIGAVGGIGCTVFASYASQNFGADLRRDLFRKVLSFSISNVNRFHTSSLITRL 126
Query: 185 SADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLALISLIIVPPVAGLAIVYGKF 244
+ D + + V + +R+ ++ G+ M I+ KL+ + + ++PP+ L + K
Sbjct: 127 TNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLSSVLIFLIPPIVLLFVWLTKK 186
Query: 245 VRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAK 304
+ R +Q+ +V E + +R V++F +E+ E +F + L
Sbjct: 187 GNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFSLI 246
Query: 305 GVFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSEL 364
N +++VL++GGV+V + +G++ ++ Y I S+ + N + +
Sbjct: 247 VFALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFI 306
Query: 365 NKGLGACHRLWEIMEREPLISTSGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLK 424
+ + R+ E++ +P I + +++G + F N+ F Y D V L+ ++
Sbjct: 307 VRASASAKRVLEVLNEKPAIEEADNALALPNVEGSVSFENVEFRYFENTDPV-LSGVNFS 365
Query: 425 IQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQE 484
++ GS+ +V+G +GSGKSTL L+ RL DP+ G++ +D +D++ + LR I +V QE
Sbjct: 366 VKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQE 425
Query: 485 PTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSG 544
LFSGTI EN+ +G D T +I+ AAK A + F+I G+D+ V G SG
Sbjct: 426 TVLFSGTIKENLKWGRED---ATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSG 482
Query: 545 GQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIR 604
GQKQR++IARAL+KK K+L+LD+ TS++D E + +++ +G T I ++ T
Sbjct: 483 GQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTAL 542
Query: 605 KSNQICVLDKGKIVEIGSYAHLIKN 629
+++I VL +GK+ G++ L+++
Sbjct: 543 LADKILVLHEGKVAGFGTHKELLEH 567
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP;
2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Length = 271
Score = 408 bits (1050), Expect = e-140
Identities = 99/263 (37%), Positives = 157/263 (59%), Gaps = 5/263 (1%)
Query: 384 ISTSGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKST 443
+S G ++KG + F ++ F+YP+ P+ +L L+ + G +T+++G +GSGKST
Sbjct: 1 MSPLSGSLAPLNMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKST 60
Query: 444 LAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDS 503
+A LL LY P GK+L+DG + + D YL +Q+ +V QEP LF + ENI YG+
Sbjct: 61 VAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTR- 119
Query: 504 SSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKIL 563
+ T +I A E+ A+ F+ F G+DT VGE G LSGGQ+Q +A+ARALI+K ++L
Sbjct: 120 -TPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLL 178
Query: 564 LLDEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIRKSNQICVLDKGKIVEIG 621
+LD ATSALDA N+ VQ + + E +TVL I +LS +++ I L +G + E G
Sbjct: 179 ILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQG 238
Query: 622 SYAHLIKNPNSMFNKLMKYQTMD 644
++ L++ + +++
Sbjct: 239 THLQLMER-GGCYRSMVEALAAP 260
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB;
ABC-transporter, transport protein; HET: ADP; 1.60A
{Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A*
2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Length = 247
Score = 381 bits (981), Expect = e-130
Identities = 112/249 (44%), Positives = 169/249 (67%), Gaps = 4/249 (1%)
Query: 394 HSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD 453
H +I F NIRF Y VIL++++L I+ G + ++G SGSGKSTL L+ R Y
Sbjct: 2 HHHHHDITFRNIRFRYKPDSP-VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI 60
Query: 454 PQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIH 513
P+NG++LIDG D+ DP +LR Q+G V Q+ L + +I +NI ++ +I+
Sbjct: 61 PENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPG---MSVEKVIY 117
Query: 514 AAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALD 573
AAK A A+ F+ + + G++TIVGE+G LSGGQ+QRIAIARAL+ KIL+ DEATSALD
Sbjct: 118 AAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALD 177
Query: 574 AENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSM 633
E+E+++ + K+ +G+TV+ IAHRLST++ +++I V++KGKIVE G + L+ P S+
Sbjct: 178 YESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESL 237
Query: 634 FNKLMKYQT 642
++ L + Q+
Sbjct: 238 YSYLYQLQS 246
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease
protein; asymmetric dimer, tetramer, P-glycoprotein;
HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Length = 243
Score = 357 bits (920), Expect = e-121
Identities = 99/242 (40%), Positives = 148/242 (61%), Gaps = 5/242 (2%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
+ ++ F+Y IL D+S + Q S+ + G SG GKST+ LL R Y P G+I
Sbjct: 2 LSARHVDFAYDDSEQ--ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59
Query: 460 LIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEAN 519
IDG I + RSQIG VSQ+ + +GTI EN+ YG+ T D+ A
Sbjct: 60 TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGD--YTDEDLWQVLDLAF 117
Query: 520 AYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYL 579
A FV + + +T VGERG+ +SGGQ+QR+AIARA ++ KIL+LDEAT++LD+E+E +
Sbjct: 118 ARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESM 177
Query: 580 VQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLMK 639
VQ A++ L++G+T L IAHRLSTI +++I ++KG+I G + L+ + ++ K +
Sbjct: 178 VQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT-HPLYAKYVS 236
Query: 640 YQ 641
Q
Sbjct: 237 EQ 238
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural
genomics, structural genomics consortium, SGC; 2.20A
{Plasmodium yoelii yoelii str}
Length = 260
Score = 348 bits (894), Expect = e-116
Identities = 107/248 (43%), Positives = 158/248 (63%), Gaps = 5/248 (2%)
Query: 395 SLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDP 454
I+F+++ FSYP + + L ++ I SG+ +++G +GSGKST+A LL R YD
Sbjct: 13 KFGVNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA 72
Query: 455 QNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHA 514
+ G I I G ++ + + +RS IG V Q+ LF+ TI NILYG D T ++I A
Sbjct: 73 E-GDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLD---ATDEEVIKA 128
Query: 515 AKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDA 574
K A Y F+ +DTIVG +G+ LSGG++QRIAIAR L+K KI++ DEATS+LD+
Sbjct: 129 TKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDS 188
Query: 575 ENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMF 634
+ EYL Q A+E L + +T++ IAHRLSTI + I +L+KGKIVE G++ L+K N +
Sbjct: 189 KTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKL-NGEY 247
Query: 635 NKLMKYQT 642
++ Q+
Sbjct: 248 AEMWNMQS 255
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter,
ABCB6, nucleotide binding domain, heme BIOS transport
protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A*
3nhb_A*
Length = 306
Score = 334 bits (859), Expect = e-111
Identities = 104/273 (38%), Positives = 155/273 (56%), Gaps = 7/273 (2%)
Query: 357 LSNFYSELNKGLGACHRLWEIMEREPLISTSGGKFFSHSLKGEIDFNNIRFSY-PSRPDA 415
S + ++++++ E + G KG I+F N+ FSY R
Sbjct: 11 SSGLVPRGSHMFIDMENMFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYADGRE-- 68
Query: 416 VILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLR 475
L D+S + G +++G SG+GKST+ LL R YD +G I IDG DI ++ LR
Sbjct: 69 -TLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLR 127
Query: 476 SQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIV 535
S IG V Q+ LF+ TI +NI YG + ++ AA+ A + ++ F G+ T V
Sbjct: 128 SHIGVVPQDTVLFNDTIADNIRYGRVTA---GNDEVEAAAQAAGIHDAIMAFPEGYRTQV 184
Query: 536 GERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLT 595
GERG+ LSGG+KQR+AIAR ++K I+LLDEATSALD NE +Q+++ K+ +T +
Sbjct: 185 GERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIV 244
Query: 596 IAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIK 628
+AHRLST+ ++QI V+ G IVE G + L+
Sbjct: 245 VAHRLSTVVNADQILVIKDGCIVERGRHEALLS 277
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance
regulator, residues 1193-1427...; CFTR, ABC transporter,
nucleotide binding domain, NBD; HET: B44; 2.70A {Homo
sapiens}
Length = 390
Score = 240 bits (613), Expect = 3e-73
Identities = 66/245 (26%), Positives = 118/245 (48%), Gaps = 10/245 (4%)
Query: 397 KGEIDFNNIRFSYPSRPDAV-ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQ 455
G++ ++ Y IL ++S I G ++G +GSGKSTL LRL + +
Sbjct: 17 GGQMTVKDLTAKY--TEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE 74
Query: 456 NGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVND-SSSVTKSDIIHA 514
G+I IDGV + R G + Q+ +FSGT +N+ D +++ + +I
Sbjct: 75 -GEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNL-----DPNAAHSDQEIWKV 128
Query: 515 AKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDA 574
A E + F D ++ + G +LS G KQ + +AR+++ K+KILLLDE ++ LD
Sbjct: 129 ADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDP 188
Query: 575 ENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMF 634
+++ +++ TV+ R+ + + +Q V+++ K+ + S L P F
Sbjct: 189 VTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRF 248
Query: 635 NKLMK 639
Sbjct: 249 VAGFI 253
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC
transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo
sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A
1ckz_A
Length = 229
Score = 167 bits (426), Expect = 3e-48
Identities = 67/253 (26%), Positives = 119/253 (47%), Gaps = 40/253 (15%)
Query: 397 KGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQN 456
E+ N+ + V L D++ KI+ G + +V GS+G+GK++L M+++ +P
Sbjct: 4 TTEVVMENVTAFWEEGGTPV-LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSE 62
Query: 457 GKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAK 516
GKI G +I SQ + GTI ENI++G +
Sbjct: 63 GKIKHSG-------------RISFCSQFSWIMPGTIKENIIFG--------------VSY 95
Query: 517 EANAYGFVID----------FKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLD 566
+ Y VI F + ++GE GI LSGGQ+ RI++ARA+ K + + LLD
Sbjct: 96 DEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLD 155
Query: 567 EATSALDAEN-EYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAH 625
LD + + +S + KL+ KT + + ++ ++K+++I +L +G G+++
Sbjct: 156 SPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSE 215
Query: 626 LIKNPNSMFNKLM 638
L F+ +
Sbjct: 216 LQNL-QPDFSSKL 227
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins,
MRP1/ABCC1, nucleotide-binding domain, ATP- binding,
hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Length = 237
Score = 161 bits (410), Expect = 9e-46
Identities = 72/255 (28%), Positives = 123/255 (48%), Gaps = 42/255 (16%)
Query: 398 GEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNG 457
I N F++ +R D LN ++ I G++ +V+G G GKS+L LL D G
Sbjct: 2 NSITVRNATFTW-ARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEG 60
Query: 458 KILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKE 517
+ I G + V Q+ + + ++ ENIL+G E
Sbjct: 61 HVAIKG-------------SVAYVPQQAWIQNDSLRENILFG--------------CQLE 93
Query: 518 ANAYGFVID----------FKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDE 567
Y VI +G T +GE+G+ LSGGQKQR+++ARA+ + I L D+
Sbjct: 94 EPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDD 153
Query: 568 ATSALDAE-NEYLVQSAI--EKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYA 624
SA+DA +++ ++ I + +++ KT + + H +S + + + I V+ GKI E+GSY
Sbjct: 154 PLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQ 213
Query: 625 HLIKNPNSMFNKLMK 639
L+ + F + ++
Sbjct: 214 ELLAR-DGAFAEFLR 227
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding
cassette, transport protein; HET: ATP; 2.05A {Homo
sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A*
1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A*
1xfa_A*
Length = 290
Score = 160 bits (408), Expect = 6e-45
Identities = 73/286 (25%), Positives = 128/286 (44%), Gaps = 45/286 (15%)
Query: 373 RLWEIMEREPLISTSGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTS 432
+ E K +++ K +++ FS S +L D++ KI+ G + +
Sbjct: 9 NVTAFWEEGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLGTPVLKDINFKIERGQLLA 68
Query: 433 VIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTI 492
V GS+G+GK++L M+++ +P GKI G +I SQ + GTI
Sbjct: 69 VAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RISFCSQNSWIMPGTI 115
Query: 493 YENIL---YGVNDSSSVTKSDIIHAAKEANAYGFVID----------FKNGFDTIVGERG 539
ENI+ Y + Y VI F + ++GE G
Sbjct: 116 KENIIGVSY------------------DEYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 157
Query: 540 IMLSGGQKQRIAIARALIKKSKILLLDEATSALDAEN-EYLVQSAIEKLIEGKTVLTIAH 598
I LSGGQ+ RI++ARA+ K + + LLD LD + + +S + KL+ KT + +
Sbjct: 158 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 217
Query: 599 RLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLMKYQTMD 644
++ ++K+++I +L +G G+++ L +KLM + D
Sbjct: 218 KMEHLKKADKILILHEGSSYFYGTFSELQNLRPDFSSKLMGCDSFD 263
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell
membrane, cobalt transport, hydrolase, ION transport;
2.30A {Clostridium perfringens atcc 13124}
Length = 275
Score = 150 bits (381), Expect = 2e-41
Identities = 61/232 (26%), Positives = 114/232 (49%), Gaps = 21/232 (9%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
+ + ++Y A L +++ I+ G +T+++G +G GKSTL + P +G+I
Sbjct: 8 LKVEELNYNYSDGTHA--LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRI 65
Query: 460 LIDGVDI--KELDPMYLRSQIGSVSQEPT--LFSGTIYENILYG-VNDSSSVTKSDIIHA 514
L D I M LR IG V Q+P LFS ++Y+++ +G VN + + +I
Sbjct: 66 LFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVN--MKLPEDEIRKR 123
Query: 515 AKEANAYGFVIDFKNGFDTIVGERGI-MLSGGQKQRIAIARALIKKSKILLLDEATSALD 573
A + K ++ LS GQK+R+AIA L+ + K+L+LDE T+ LD
Sbjct: 124 VDNALKRTGIEHLK--------DKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLD 175
Query: 574 AENEYLVQSAIEKLIE--GKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGS 622
+ + ++ + G T++ H + + + + V+ +G+++ G+
Sbjct: 176 PMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGN 227
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I
ABC type importer, methionine uptake transporter,
membrane protein; HET: ADP; 2.90A {Escherichia coli}
PDB: 3tuj_C 3tuz_C* 3dhw_C
Length = 366
Score = 150 bits (381), Expect = 2e-40
Identities = 73/253 (28%), Positives = 121/253 (47%), Gaps = 40/253 (15%)
Query: 400 IDFNNIRFSYPSRPDAVI-LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGK 458
I +NI + + LN++SL + +G + VIG+SG+GKSTL + L P G
Sbjct: 25 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 84
Query: 459 ILIDGVDIKELDPMYL---RSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHA 514
+L+DG ++ L L R QIG + Q L S T++ N+ + + + K ++
Sbjct: 85 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPL-ELDNTPKDEVKRR 143
Query: 515 AKE----------ANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILL 564
E ++Y LSGGQKQR+AIARAL K+LL
Sbjct: 144 VTELLSLVGLGDKHDSYP-----------------SNLSGGQKQRVAIARALASNPKVLL 186
Query: 565 LDEATSALDAENEY----LVQSAIEKLIEGKTVLTIAHRLSTIRK-SNQICVLDKGKIVE 619
D+ATSALD L++ +L G T+L I H + +++ + + V+ G+++E
Sbjct: 187 CDQATSALDPATTRSILELLKDINRRL--GLTILLITHEMDVVKRICDCVAVISNGELIE 244
Query: 620 IGSYAHLIKNPNS 632
+ + + +P +
Sbjct: 245 QDTVSEVFSHPKT 257
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt
transport, TM02 hydrolase, inner membrane, membrane,
nucleotide-binding; 2.30A {Thermotoga maritima}
Length = 266
Score = 146 bits (370), Expect = 7e-40
Identities = 69/234 (29%), Positives = 112/234 (47%), Gaps = 26/234 (11%)
Query: 400 IDFNNIRFSYPSRP--DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNG 457
I+ N+ + + L ++SL I G V G++GSGKSTL ++ L +P +G
Sbjct: 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSG 62
Query: 458 KILIDGVDIKELDPMYLRSQIGSVSQEPT--LFSGTIYENILYG-VNDSSSVTKSDIIHA 514
+L DG K + +R IG Q P F+ +++ + + N D +
Sbjct: 63 DVLYDGERKKGYE---IRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPD---RDPVPL 116
Query: 515 AKEA-NAYGFVIDF---KNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATS 570
K+A G D + F LSGG+K+R+AIA ++ + IL+LDE
Sbjct: 117 VKKAMEFVGLDFDSFKDRVPFF---------LSGGEKRRVAIASVIVHEPDILILDEPLV 167
Query: 571 ALDAENEYLVQSAIEKLIE-GKTVLTIAHRLSTI-RKSNQICVLDKGKIVEIGS 622
LD E + + +EK GKTV+ I+H + T+ +++ VL+KGK V G+
Sbjct: 168 GLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGT 221
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural
genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Length = 263
Score = 140 bits (355), Expect = 6e-38
Identities = 45/251 (17%), Positives = 101/251 (40%), Gaps = 27/251 (10%)
Query: 400 IDFNNIRFSYPSRP-DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGK 458
I N+ + + + L +++L++ G ++G +GSGK+TL + L P +G
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGN 59
Query: 459 ILIDGVDIKELDPMYLRSQIGSVSQEPTLFSG--TIYENILYGVNDSSSVTKSDIIHAAK 516
I I+G+++++ +R+ I + P + T+ + + + + + + K
Sbjct: 60 IFINGMEVRK-----IRNYIRYSTNLPEAYEIGVTVNDIVYLYE-ELKGLDRDLFLEMLK 113
Query: 517 EANAYGFVIDFKNGFDTIVGERGIM-LSGGQKQRIAIARALIKKSKILLLDEATSALDAE 575
+ R + LS GQ + + AL + +I+ LDE +DA
Sbjct: 114 AL-----------KLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAA 162
Query: 576 NEYLVQSAIEKLIEGKTVLTIAHRLSTIRK-SNQICVLDKG-KIVEIGSYAHLIKNPNSM 633
+++ I++ GK + + H L + G ++ S + L+++
Sbjct: 163 RRHVISRYIKEY--GKEGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLESSIVE 220
Query: 634 FNKLMKYQTMD 644
+ +D
Sbjct: 221 GERNDALLVLD 231
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette,
hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Length = 279
Score = 138 bits (351), Expect = 4e-37
Identities = 52/246 (21%), Positives = 100/246 (40%), Gaps = 26/246 (10%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
I + I + IL +S +I G + G +G+GK+TL +L +G +
Sbjct: 22 IQLDQIGRMKQGKT---ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTV 78
Query: 460 LIDGVDI--KELDPMYLRSQIGSVSQEPTL---FSGTIYENILYGVNDSS----SVTKSD 510
+ G +R IG VS + + ++ G S +
Sbjct: 79 NLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEI 138
Query: 511 IIHAAKEANAYGFVIDFKNGFDTIVGERGI-MLSGGQKQRIAIARALIKKSKILLLDEAT 569
A + G + + I LS G+KQR+ IARAL+ + ++L+LDE
Sbjct: 139 RNEAHQLLKLVG-MSAKAQ--------QYIGYLSTGEKQRVMIARALMGQPQVLILDEPA 189
Query: 570 SALDAENEYLVQSAIEKLIE---GKTVLTIAHRLSTIRKS-NQICVLDKGKIVEIGSYAH 625
+ LD + S ++ L + ++ + H + I + ++I +L G+ ++ G+
Sbjct: 190 AGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVED 249
Query: 626 LIKNPN 631
++ + N
Sbjct: 250 ILTSEN 255
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative
iron chelatin ABC transporter, nucleotide binding
domain; 2.40A {Haemophilus influenzae}
Length = 253
Score = 130 bits (330), Expect = 2e-34
Identities = 63/226 (27%), Positives = 103/226 (45%), Gaps = 31/226 (13%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
+ N+ F Y + + L+ + G + +V+G +G GKSTL LLL ++ P GKI
Sbjct: 5 LSVENLGFYYQAEN--FLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI 62
Query: 460 LIDGVDIKELDPMYLRSQIGSVSQEPTL-FSGTIYENILYG----VNDSSSVTKSDIIHA 514
+ IG V Q + F+ ++ + +L G +N + D
Sbjct: 63 EVYQ-------------SIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDY-QV 108
Query: 515 AKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDA 574
A +A Y + LSGGQ+Q I IARA+ + K++LLDE TSALD
Sbjct: 109 AMQALDYLNLTHLA---KREFTS----LSGGQRQLILIARAIASECKLILLDEPTSALDL 161
Query: 575 ENEYLVQSAIEKLI--EGKTVLTIAHRLST-IRKSNQICVLDKGKI 617
N+ +V S + L + TV+ H+ + + +N+ +L+K
Sbjct: 162 ANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQNF 207
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET:
ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A*
2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Length = 263
Score = 128 bits (323), Expect = 2e-33
Identities = 76/233 (32%), Positives = 111/233 (47%), Gaps = 36/233 (15%)
Query: 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDI--KELDPMYL 474
+L +++ I+ G + VIG SGSGKST L L D G+I+IDG+++ K+ + +
Sbjct: 39 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 98
Query: 475 RSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKE----------ANAYGF 523
R ++G V Q LF T+ NI + A E A+AY
Sbjct: 99 REEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYP- 157
Query: 524 VIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAE--NEYLVQ 581
LSGGQ QR+AIARAL + KI+L DE TSALD E E V
Sbjct: 158 ----------------DSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGE--VL 199
Query: 582 SAIEKL-IEGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLIKNPNS 632
S +++L EG T++ + H + R+ +++ +D G I+E G L P
Sbjct: 200 SVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDRPQH 252
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP;
1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Length = 262
Score = 127 bits (321), Expect = 3e-33
Identities = 78/244 (31%), Positives = 117/244 (47%), Gaps = 46/244 (18%)
Query: 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMY--- 473
+L +SL+ ++G + S+IGSSGSGKST + L P G I+++G +I +
Sbjct: 21 VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQL 80
Query: 474 ----------LRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAY- 521
LR+++ V Q L+S T+ EN++ V A + A Y
Sbjct: 81 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEA---PIQVLGLSKHDARERALKYL 137
Query: 522 ---GFVIDFKNGFDTIVGERG-----IMLSGGQKQRIAIARALIKKSKILLLDEATSALD 573
G + ER + LSGGQ+QR++IARAL + +LL DE TSALD
Sbjct: 138 AKVG------------IDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALD 185
Query: 574 AENEYLVQ---SAIEKL-IEGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLIK 628
E LV +++L EGKT++ + H + R S+ + L +GKI E G +
Sbjct: 186 PE---LVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFG 242
Query: 629 NPNS 632
NP S
Sbjct: 243 NPQS 246
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis,
hydrolyase/translation complex; HET: ADP; 1.90A
{Pyrococcus furiosus}
Length = 538
Score = 132 bits (334), Expect = 6e-33
Identities = 60/257 (23%), Positives = 107/257 (41%), Gaps = 38/257 (14%)
Query: 392 FSHSLKGEIDFNNIRFSYPS---RPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLL 448
F+ + + +YP + L +I+ G + ++G +G GK+T +L
Sbjct: 273 FTKTGERVEIERETLVTYPRLVKDYGSFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKML 332
Query: 449 LRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVND--SSSV 506
+ +P GKI D + + Q + GT+YE + +S+
Sbjct: 333 AGVEEPTEGKIEWDL-------TVAYKPQYIKAD-----YEGTVYELLSKIDASKLNSNF 380
Query: 507 TKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIM-LSGGQKQRIAIARALIKKSKILLL 565
K++++ + Y +R + LSGG+ QR+AIA L++ + I LL
Sbjct: 381 YKTELLKPLGIIDLY---------------DREVNELSGGELQRVAIAATLLRDADIYLL 425
Query: 566 DEATSALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGS 622
DE ++ LD E V AI L+E KT L + H + I S+++ V + G+ + G
Sbjct: 426 DEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFE-GEPGKYG- 483
Query: 623 YAHLIKNPNSMFNKLMK 639
A N+ +
Sbjct: 484 RALPPMGMREGMNRFLA 500
Score = 112 bits (282), Expect = 3e-26
Identities = 54/244 (22%), Positives = 94/244 (38%), Gaps = 48/244 (19%)
Query: 404 NIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQ------NG 457
+ Y +A +L L + ++ G + ++G +G+GKST +L P +
Sbjct: 26 DCVHRYG--VNAFVLYRLPV-VKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSW 82
Query: 458 KILIDGVDIKELDPMYLRSQIGS----------VSQEPTLFSGTIYENILYGVNDSSSVT 507
+I EL Y V P G + E +
Sbjct: 83 DGVIRAFRGNEL-QNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELL----------K 131
Query: 508 KSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDE 567
K+D +E ++ +N + + LSGG+ QR+AIA AL++ + DE
Sbjct: 132 KADETGKLEEVVK---ALELENVLEREIQH----LSGGELQRVAIAAALLRNATFYFFDE 184
Query: 568 ATSALDAENEYLVQSAIEKLI-----EGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIG 621
+S LD + + I EGK+VL + H L+ + S+ I V+ G+ G
Sbjct: 185 PSSYLDIR----QRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVV-YGEPGVYG 239
Query: 622 SYAH 625
++
Sbjct: 240 IFSQ 243
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta
motif, beta sandwich, ligand binding protein; 1.90A
{Alicyclobacillus acidocaldarius}
Length = 355
Score = 128 bits (323), Expect = 1e-32
Identities = 67/253 (26%), Positives = 117/253 (46%), Gaps = 44/253 (17%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
I+F + YP A + +S +I+ G M ++G SGSGK+T+ L+ L P G +
Sbjct: 15 IEFVGVEKIYPG--GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDV 72
Query: 460 LIDGVDIKELDPMYLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEA 518
I G + +L P R +G V Q LF T+Y+N+ +G+ V K ++ +E
Sbjct: 73 WIGGKRVTDLPP-QKR-NVGLVFQNYALFQHMTVYDNVSFGLR-EKRVPKDEMDARVREL 129
Query: 519 ----NAYGFVIDFKNGFDTIVGERGI-MLSGGQKQRIAIARALIKKSKILLLDEATSALD 573
+ R LSGGQ+QR+A+ARAL + ++LL DE +A+D
Sbjct: 130 LRFMRLESY------------ANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAID 177
Query: 574 AENEYLVQSAIEKLIE--GKTV----------LTIAHRLSTIRKSNQICVLDKGKIVEIG 621
+ +++ + ++ + G T L +A R + VL +G + + G
Sbjct: 178 TQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADR---------VLVLHEGNVEQFG 228
Query: 622 SYAHLIKNPNSMF 634
+ + + P ++F
Sbjct: 229 TPEEVYEKPGTLF 241
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase,
translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Length = 538
Score = 128 bits (325), Expect = 8e-32
Identities = 48/213 (22%), Positives = 87/213 (40%), Gaps = 26/213 (12%)
Query: 412 RPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDP 471
+ L + + + G + ++G +G GK+T A +L+ G + + +
Sbjct: 278 KLGDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQ 337
Query: 472 MYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGF 531
+ G+V Q + + VTK +H E+N
Sbjct: 338 RIFPNYDGTVQQ---YLENASKDALSTSSWFFEEVTKRLNLHRLLESN------------ 382
Query: 532 DTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE-- 589
V + LSGG+ Q++ IA L K++ + +LD+ +S LD E Y+V AI+++
Sbjct: 383 ---VND----LSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRER 435
Query: 590 GKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIG 621
I H LS +++I V KG+ + G
Sbjct: 436 KAVTFIIDHDLSIHDYIADRIIVF-KGEPEKAG 467
Score = 108 bits (272), Expect = 5e-25
Identities = 42/217 (19%), Positives = 92/217 (42%), Gaps = 17/217 (7%)
Query: 418 LNDLSLKI-QSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLR- 475
L ++ ++ V+G +G GK+T+ +L P G + K+ R
Sbjct: 14 FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDP--NSKVGKDEVLKRFRG 71
Query: 476 SQIGSVSQEPTLFSGTIYENILY---GVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFD 532
+I + +E + I++ V +S K + + + G + K +
Sbjct: 72 KEIYNYFKEL----YSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLN 127
Query: 533 TIVG--ERGI-MLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE 589
+ + +LSGG QR+ +A +L++++ + + D+ +S LD + AI +L++
Sbjct: 128 -MTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLK 186
Query: 590 GKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAH 625
K V+ + H L + ++ I ++ G+ G +
Sbjct: 187 NKYVIVVDHDLIVLDYLTDLIHII-YGESSVYGRVSK 222
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET:
ATP; NMR {Saccharomyces cerevisiae}
Length = 608
Score = 128 bits (324), Expect = 2e-31
Identities = 54/252 (21%), Positives = 94/252 (37%), Gaps = 38/252 (15%)
Query: 397 KGEIDFNNIRFSYPS---RPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD 453
+ D + FSYPS +LN + + ++G +G+GK+TL LL
Sbjct: 344 DLQNDSASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALK 403
Query: 454 PQNGKILIDGVDIKELDPMYLRSQIGSVSQEPT--LFSGTIYENILYGVNDSSSVTKSDI 511
P G+ I +L+ +I LF I L + ++D+
Sbjct: 404 PDEGQD------IPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFL------NPQFQTDV 451
Query: 512 IHAAKEANAYGFVIDFKNGFDTIVGERGIM-LSGGQKQRIAIARALIKKSKILLLDEATS 570
+ K + ++ + LSGG+ QR+AI AL + I L+DE ++
Sbjct: 452 V---KPLRIDDII------------DQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSA 496
Query: 571 ALDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYA--H 625
LD+E + I + I KT + H ++++ V + + A
Sbjct: 497 YLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPES 556
Query: 626 LIKNPNSMFNKL 637
L+ N L
Sbjct: 557 LLTGCNRFLKNL 568
Score = 112 bits (282), Expect = 4e-26
Identities = 40/236 (16%), Positives = 82/236 (34%), Gaps = 36/236 (15%)
Query: 404 NIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI---- 459
++ Y + + G + ++G++G GKST +L P G+
Sbjct: 82 HVTHRYSANS---FKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPP 138
Query: 460 -------LIDGVDIKELDPMYLRSQIGSVSQEP-TLFSGTIYENILYGVNDSSSVTKSDI 511
G +++ L I ++ + + + V + +
Sbjct: 139 EWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKS 198
Query: 512 IHAAKEANAYGFVIDFKNGFDTIVGERGIM------LSGGQKQRIAIARALIKKSKILLL 565
K I+ ++ LSGG+ QR AI + ++++ + +
Sbjct: 199 PEDVKRYIK-------------ILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMF 245
Query: 566 DEATSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIRK-SNQICVLDKGKIVE 619
DE +S LD + I L+ K V+ + H LS + S+ +C++ V
Sbjct: 246 DEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPSVY 301
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 127 bits (322), Expect = 3e-31
Identities = 57/243 (23%), Positives = 103/243 (42%), Gaps = 33/243 (13%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
+++ + Y S L +I+ G + ++G +G GK+T +L + +P GK+
Sbjct: 358 VEYPRLVKDYGSF----KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV 413
Query: 460 LIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEAN 519
D + G+V + L S + +S+ K++++
Sbjct: 414 EWDL-TVAYKPQYIKAEYEGTVYE---LLSKIDSSKL------NSNFYKTELLKP----- 458
Query: 520 AYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYL 579
+ + +D V + LSGG+ QR+AIA L++ + I LLDE ++ LD E
Sbjct: 459 -----LGIIDLYDRNVED----LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLA 509
Query: 580 VQSAIEKLIE--GKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLIKNPNSMFNK 636
V AI L+E KT L + H + I S+++ V + G+ G A N+
Sbjct: 510 VSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFE-GEPGRHG-RALPPMGMREGMNR 567
Query: 637 LMK 639
+
Sbjct: 568 FLA 570
Score = 116 bits (293), Expect = 1e-27
Identities = 54/237 (22%), Positives = 93/237 (39%), Gaps = 38/237 (16%)
Query: 404 NIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGK----- 458
+ Y + ++ G + ++G +G+GK+T +L P +
Sbjct: 96 DCVHRYGVN---AFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSW 152
Query: 459 -ILIDGVDIKELDPMYLRSQIGSVSQ---------EPTLFSGTIYENILYGVNDSSSVTK 508
+I EL + R + G + P G + E + K
Sbjct: 153 DNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELL----------KK 202
Query: 509 SDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEA 568
D + +E ++ +N D + + LSGG+ QR+AIA AL++K+ DE
Sbjct: 203 VDEVGKFEEVVK---ELELENVLDRELHQ----LSGGELQRVAIAAALLRKAHFYFFDEP 255
Query: 569 TSALDAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSY 623
+S LD V I +L EGK VL + H L+ + S+ I V+ G+ G +
Sbjct: 256 SSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVV-YGEPGVYGIF 311
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane,
membrane, transmembrane, transport, ATP- binding,
hydrolase, nucleotide-binding, periplasm; HET: 1PE;
2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Length = 249
Score = 119 bits (300), Expect = 2e-30
Identities = 48/220 (21%), Positives = 101/220 (45%), Gaps = 26/220 (11%)
Query: 414 DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMY 473
++ L LS ++++G + ++G +G+GKSTL + + G I G ++
Sbjct: 12 ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATK 70
Query: 474 LRSQIGSVSQEPTL-FSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKN-GF 531
L +SQ+ T F+ ++ + +D T++++++ A A + D
Sbjct: 71 LALHRAYLSQQQTPPFATPVWHYLTLHQHDK---TRTELLNDVAGALA---LDDKLGRST 124
Query: 532 DTIVGERGIMLSGGQKQRIAIARAL-------IKKSKILLLDEATSALDAENEYLVQSAI 584
+ LSGG+ QR+ +A + ++LLLDE ++LD + + +
Sbjct: 125 NQ--------LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKIL 176
Query: 585 EKLI-EGKTVLTIAHRLS-TIRKSNQICVLDKGKIVEIGS 622
L +G ++ +H L+ T+R +++ +L GK++ G
Sbjct: 177 SALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGR 216
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein;
ATP-binding, nucleotide-binding, membrane,
transmembrane, transport protein; 3.00A {Methanosarcina
acetivorans} SCOP: b.40.6.3 c.37.1.12
Length = 348
Score = 120 bits (304), Expect = 4e-30
Identities = 66/256 (25%), Positives = 111/256 (43%), Gaps = 55/256 (21%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
I+ ++ + L++LSLK++SG ++G +G+GK+ L+ + P +G+I
Sbjct: 2 IEIESLSRKW----KNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI 57
Query: 460 LIDGVDIKELDPMYLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEA 518
L+DG D+ +L P I V Q +LF + +N+ +G+ + K +
Sbjct: 58 LLDGKDVTDLSP-EKH-DIAFVYQNYSLFPHMNVKKNLEFGM----RMKKIKDPKRVLDT 111
Query: 519 NAY----GFVIDFKNGFDTIVGERGI-MLSGGQKQRIAIARALIKKSKILLLDEATSALD 573
+R LSGG++QR+A+ARAL+ KILLLDE SALD
Sbjct: 112 ARDLKIEHL------------LDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALD 159
Query: 574 A---ENEYLVQSAIEKLIE--GKTV----------LTIAHRLSTIRKSNQICVLDKGKIV 618
EN + + L + TV +A R I V+ GK++
Sbjct: 160 PRTQEN---AREMLSVLHKKNKLTVLHITHDQTEARIMADR---------IAVVMDGKLI 207
Query: 619 EIGSYAHLIKNPNSMF 634
++G + + P
Sbjct: 208 QVGKPEEIFEKPVEGR 223
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint
center for structural genomics, JCSG, protein structu
initiative, PSI; 2.10A {Thermotoga maritima} SCOP:
c.37.1.12
Length = 256
Score = 116 bits (293), Expect = 2e-29
Identities = 54/223 (24%), Positives = 99/223 (44%), Gaps = 22/223 (9%)
Query: 414 DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMY 473
IL +S +I+ G + +IG +G+GK+T ++ L P +G + + G ++ E +P
Sbjct: 27 KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHE 85
Query: 474 LRSQIGSVSQEPTLFSG-TIYENI-----LYGVNDSSSVTKSDIIHAAKEANAYGFVIDF 527
+R I + +E + E + Y + S+I + A
Sbjct: 86 VRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASS------SSEIEEMVERATEI---AGL 136
Query: 528 KNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKL 587
V S G +++ IARAL+ ++ +LDE TS LD N V+ +++
Sbjct: 137 GEKIKDRVST----YSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQA 192
Query: 588 -IEGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLIK 628
EG T+L +H + + ++I ++ G IVE G+ L +
Sbjct: 193 SQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKE 235
>1sgw_A Putative ABC transporter; structural genomics, P protein structure
initiative, southeast collaboratory for S genomics,
secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Length = 214
Score = 113 bits (285), Expect = 8e-29
Identities = 47/227 (20%), Positives = 104/227 (45%), Gaps = 36/227 (15%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
++ ++ Y D +L +++ I+ G++ + G +G GK+TL + P G+I
Sbjct: 11 LEIRDLSVGY----DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 66
Query: 460 LIDGVDIKELDPMYLRSQIGSVSQEPTLFSG-TIYENI-----LYGVNDSSSVTKSDIIH 513
+ +GV I ++ + +I + +E + ++ + + LYGV + K++I+
Sbjct: 67 IYNGVPITKV-----KGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVN----KNEIMD 117
Query: 514 AAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALD 573
A + V+D K LS G +R+ +A L+ ++I +LD+ A+D
Sbjct: 118 ALESVE----VLDLKKKLGE--------LSQGTIRRVQLASTLLVNAEIYVLDDPVVAID 165
Query: 574 AENEYLVQSAIEKLI--EGKTVLTIAHRLSTIRKSNQICVLDKGKIV 618
++++ V +I +++ +G +++ LS + L K
Sbjct: 166 EDSKHKVLKSILEILKEKGIVIISSREELSYC---DVNENLHKYSTK 209
>3tif_A Uncharacterized ABC transporter ATP-binding prote;
nucleotide-binding domain, ABC transporter ATPase; HET:
ADP; 1.80A {Methanocaldococcus jannaschii dsm
2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Length = 235
Score = 114 bits (287), Expect = 8e-29
Identities = 68/244 (27%), Positives = 114/244 (46%), Gaps = 42/244 (17%)
Query: 400 IDFNNIRFSYPSRPDAV-ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD-PQNG 457
+ N+ +Y + + L +++L I+ G S++G SGSGKST+ + ++ D P G
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTM-LNIIGCLDKPTEG 60
Query: 458 KILIDGVDIKELDPMYL----RSQIGSVSQE----PTLFSGTIYENI----LYGVNDSSS 505
++ ID + +LD L R +IG V Q+ P L T EN+ ++ +
Sbjct: 61 EVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLL---TALENVELPLIF--KYRGA 115
Query: 506 VTKSDIIHAAKEANAYGFVIDFKNGFDTIVG--ERGIM-----LSGGQKQRIAIARALIK 558
++ + A E + ER LSGGQ+QR+AIARAL
Sbjct: 116 MSGEERRKRALECL-------------KMAELEERFANHKPNQLSGGQQQRVAIARALAN 162
Query: 559 KSKILLLDEATSALDAENEYLVQSAIEKL--IEGKTVLTIAHRLSTIRKSNQICVLDKGK 616
I+L D+ T ALD++ + ++KL +GKTV+ + H ++ R +I L G+
Sbjct: 163 NPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGE 222
Query: 617 IVEI 620
+
Sbjct: 223 VERE 226
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding
domain, ABC motor domain, ferric iron transport, cell
inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Length = 359
Score = 116 bits (292), Expect = 2e-28
Identities = 69/264 (26%), Positives = 114/264 (43%), Gaps = 63/264 (23%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLR----LYDPQ 455
+ ++ S+ + +LND+SL + G + +IG+SG GK+TL LR P
Sbjct: 5 LHIGHLSKSFQ---NTPVLNDISLSLDPGEILFIIGASGCGKTTL----LRCLAGFEQPD 57
Query: 456 NGKILIDGVDIKELD---PMYLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDI 511
+G+I + G I + P+ R ++G + QE LF T+Y NI YG+ + +
Sbjct: 58 SGEISLSGKTIFSKNTNLPVRER-RLGYLVQEGVLFPHLTVYRNIAYGLG-NGKGRTAQE 115
Query: 512 IHAAKEANAYGFVIDFKNGFDTIVGERGI------MLSGGQKQRIAIARALIKKSKILLL 565
+ + G + LSGGQ+QR A+ARAL +++LL
Sbjct: 116 RQRIEAMLE-------------LTGISELAGRYPHELSGGQQQRAALARALAPDPELILL 162
Query: 566 DEATSALDAENEYL---VQSAIEKLIE--GKTV----------LTIAHRLSTIRKSNQIC 610
DE SALD + L ++ + + GK+ L A R I
Sbjct: 163 DEPFSALDEQ---LRRQIREDMIAALRANGKSAVFVSHDREEALQYADR---------IA 210
Query: 611 VLDKGKIVEIGSYAHLIKNPNSMF 634
V+ +G+I++ S L + P +
Sbjct: 211 VMKQGRILQTASPHELYRQPADLD 234
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein;
structural genomics; 1.70A {Aquifex aeolicus} PDB:
2pcl_A
Length = 224
Score = 109 bits (276), Expect = 2e-27
Identities = 63/240 (26%), Positives = 102/240 (42%), Gaps = 45/240 (18%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYD-PQNGK 458
+ NI+ IL +SL ++ G S+IG+SGSGKSTL + +L L D P GK
Sbjct: 5 LRAENIKKVIRGYE---ILKGISLSVKKGEFVSIIGASGSGKSTL-LYILGLLDAPTEGK 60
Query: 459 ILIDGVDIKELDPMYL----RSQIGSVSQE----PTLFSGTIYENI----LYGVNDSSSV 506
+ ++G ++ + L ++G V Q P L T EN+ L
Sbjct: 61 VFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPEL---TALENVIVPMLK-----MGK 112
Query: 507 TKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIM------LSGGQKQRIAIARALIKKS 560
K + + + +G + LSGG++QR+AIARAL +
Sbjct: 113 PKKEAKERGEYLL-------------SELGLGDKLSRKPYELSGGEQQRVAIARALANEP 159
Query: 561 KILLLDEATSALDAENEYLVQSAIEKL-IEGKTVLTIAHRLSTIRKSNQICVLDKGKIVE 619
+L DE T LD+ N V K+ G +++ + H +++ + GK+V
Sbjct: 160 ILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVG 219
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane
protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Length = 240
Score = 109 bits (275), Expect = 3e-27
Identities = 54/229 (23%), Positives = 101/229 (44%), Gaps = 38/229 (16%)
Query: 420 DLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479
++ ++ ++G +G+GKS L+ + P G++ ++G DI L P R IG
Sbjct: 17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPP-ERR-GIG 73
Query: 480 SVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGER 538
V Q+ LF ++Y NI YG+ +V + + +E + +R
Sbjct: 74 FVPQDYALFPHLSVYRNIAYGLR---NVERVERDRRVREMAEKLGIAHL--------LDR 122
Query: 539 GIM-LSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE--GKTV-- 593
LSGG++QR+A+ARAL+ + ++LLLDE SA+D + + ++ + + +
Sbjct: 123 KPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILH 182
Query: 594 --------LTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMF 634
+A + V+ G+IVE G + + +
Sbjct: 183 VTHDLIEAAMLADE---------VAVMLNGRIVEKGK-LKELFSAKNGE 221
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase,
ATP-binding cassette, ATPase, transport protein; 1.45A
{Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB:
1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Length = 353
Score = 101 bits (254), Expect = 1e-23
Identities = 67/262 (25%), Positives = 116/262 (44%), Gaps = 54/262 (20%)
Query: 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLR----LYDP 454
I N+ + V L+++++ I++G ++G SG+GK+T +R L P
Sbjct: 3 RIIVKNVSKVFKK-GKVVALDNVNINIENGERFGILGPSGAGKTTF----MRIIAGLDVP 57
Query: 455 QNGKILIDGVDIKELDPMYLRSQ---IGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSD 510
G++ D + + + + IG V Q L+ T +ENI + + + ++K +
Sbjct: 58 STGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLT-NMKMSKEE 116
Query: 511 IIHAAKEANAYGFVIDFKNGFDTIVGERGIM------LSGGQKQRIAIARALIKKSKILL 564
I +E I+ ++ LSG Q+QR+A+ARAL+K +LL
Sbjct: 117 IRKRVEEVAK-------------ILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLL 163
Query: 565 LDEATSALDAENEYLVQSAIEKLIE--GKTV----------LTIAHRLSTIRKSNQICVL 612
LDE S LDA ++ ++++ G T+ IA R + VL
Sbjct: 164 LDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADR---------VGVL 214
Query: 613 DKGKIVEIGSYAHLIKNPNSMF 634
KGK+V++G L NP S+
Sbjct: 215 VKGKLVQVGKPEDLYDNPVSIQ 236
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding
protein; beta-core domain; HET: ADP; 1.60A
{Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB:
1gaj_A 1g9x_A*
Length = 257
Score = 94.1 bits (235), Expect = 1e-21
Identities = 52/212 (24%), Positives = 91/212 (42%), Gaps = 15/212 (7%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQ 477
L+ +S+ + G +T +IG +GSGKSTL ++ G++ + DI +P
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEP-AELYH 81
Query: 478 IGSVS--QEPTLFSG-TIYENILYGVNDSSSVTKSDII---HAAKEANAYGF---VIDFK 528
G V Q P T+ EN+L G + + KE +++F
Sbjct: 82 YGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFL 141
Query: 529 NGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSAL-DAENEYLVQSAIEKL 587
+ + LSGGQ + + I RAL+ K++++DE + + + + +L
Sbjct: 142 -KLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFN-HVLEL 199
Query: 588 IE-GKTVLTIAHRLSTIRK-SNQICVLDKGKI 617
G T L I HRL + + + V+ G+I
Sbjct: 200 KAKGITFLIIEHRLDIVLNYIDHLYVMFNGQI 231
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding
protein; structural genomics, NPPSFA; 1.94A {Pyrococcus
horikoshii}
Length = 362
Score = 95.0 bits (237), Expect = 3e-21
Identities = 78/265 (29%), Positives = 126/265 (47%), Gaps = 67/265 (25%)
Query: 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLR----LYDP 454
EI NI + + LN+++LKI+ G +++G SGSGKSTL L +Y P
Sbjct: 3 EIKLENIVKKFG---NFTALNNINLKIKDGEFMALLGPSGSGKSTL----LYTIAGIYKP 55
Query: 455 QNGKILIDGVDIKELDPMYLRSQIGSVSQE----PTLFSGTIYENILYGVNDSSSVTKSD 510
+GKI D D+ EL P R+ +G V Q P + T+Y+NI + + + +
Sbjct: 56 TSGKIYFDEKDVTELPPKD-RN-VGLVFQNWALYPHM---TVYKNIAFPLE-LRKAPREE 109
Query: 511 IIHAAKEANAYGFVIDFKNGFDTIVGERGIM------LSGGQKQRIAIARALIKKSKILL 564
I +E ++ ++ LSGGQ+QR+AIARAL+K+ ++LL
Sbjct: 110 IDKKVREVAK-------------MLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLL 156
Query: 565 LDEATSALDAENEYL-VQ--SAIEKL---IEGKTV---------LTIAHRLSTIRKSNQI 609
LDE S LDA L ++ + +++L + TV L +A R I
Sbjct: 157 LDEPLSNLDAL---LRLEVRAELKRLQKELGITTVYVTHDQAEALAMADR---------I 204
Query: 610 CVLDKGKIVEIGSYAHLIKNPNSMF 634
V+ +G+I+++G+ + P F
Sbjct: 205 AVIREGEILQVGTPDEVYYKPKYKF 229
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga
maritima} SCOP: c.37.1.12
Length = 240
Score = 87.9 bits (219), Expect = 8e-20
Identities = 67/252 (26%), Positives = 113/252 (44%), Gaps = 55/252 (21%)
Query: 403 NNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILID 462
++ Y + + LK+ G + ++IG++G+GK+T + L Q GKI+ +
Sbjct: 10 QSLHVYYG---AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFN 66
Query: 463 GVDIKELDPMYLRSQIGSVSQEP---TLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEA 518
G DI ++ +++G ++ P +F T+YEN++ G A
Sbjct: 67 GQDITNKPA-HVINRMG-IALVPEGRRIFPELTVYENLMMG--------------AYNRK 110
Query: 519 NAYGFVIDFKNGFDT--IVGER----GIMLSGGQKQRIAIARALIKKSKILLLDEATSAL 572
+ G D + F + ER G LSGG++Q +AI RAL+ + K+L++DE + L
Sbjct: 111 DKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGL 170
Query: 573 DAENEYLVQ---SAIEKL-IEGKTV----------LTIAHRLSTIRKSNQICVLDKGKIV 618
A LV I+K+ EG T+ L +AH VL+ G+IV
Sbjct: 171 -API--LVSEVFEVIQKINQEGTTILLVEQNALGALKVAHY---------GYVLETGQIV 218
Query: 619 EIGSYAHLIKNP 630
G + L+ N
Sbjct: 219 LEGKASELLDNE 230
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha
and beta proteins (A/B) TM0421, structural genomics,
NPPSFA; 2.11A {Thermotoga maritima}
Length = 359
Score = 89.2 bits (222), Expect = 2e-19
Identities = 69/265 (26%), Positives = 122/265 (46%), Gaps = 67/265 (25%)
Query: 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLR----LYDP 454
I N++ + ++ +S +++ G +++G SG GK+T L +Y P
Sbjct: 3 SIRVVNLKKYFG---KVKAVDGVSFEVKDGEFVALLGPSGCGKTTT----LLMLAGIYKP 55
Query: 455 QNGKILIDGVDIKELDPMYLRSQIGSVSQE----PTLFSGTIYENILYGVNDSSSVTKSD 510
+G+I D V + ++ P Y R +G V Q P + T++ENI + + + ++K +
Sbjct: 56 TSGEIYFDDVLVNDIPPKY-RE-VGMVFQNYALYPHM---TVFENIAFPLR-ARRISKDE 109
Query: 511 IIHAAKEANAYGFVIDFKNGFDTIVGERGIM------LSGGQKQRIAIARALIKKSKILL 564
+ E + ++ LSGGQ+QR+A+ARAL+K+ K+LL
Sbjct: 110 VEKRVVEIAR-------------KLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLL 156
Query: 565 LDEATSALDAENEYL-VQ--SAIEKLIE--GKTVL----------TIAHRLSTIRKSNQI 609
DE S LDA L + + I+ L + G T + T+A R I
Sbjct: 157 FDEPLSNLDAN---LRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASR---------I 204
Query: 610 CVLDKGKIVEIGSYAHLIKNPNSMF 634
V ++GK+V+ G+ + +P +MF
Sbjct: 205 AVFNQGKLVQYGTPDEVYDSPKNMF 229
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active
transport, sugar uptake and regulation, transport
protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3
b.40.6.3 c.37.1.12 PDB: 1vci_A*
Length = 372
Score = 85.8 bits (213), Expect = 3e-18
Identities = 71/271 (26%), Positives = 117/271 (43%), Gaps = 79/271 (29%)
Query: 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLR----LYDP 454
E+ N+ + + +N L+L I+ G ++G SG GK+T LR L +P
Sbjct: 11 EVKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTT----LRMIAGLEEP 63
Query: 455 QNGKILIDGVDIKELDP------MYLRSQIGSVSQE----PTLFSGTIYENILYGVNDSS 504
G+I D+ L P M V Q P + T+YENI + +
Sbjct: 64 TEGRIYFGDRDVTYLPPKDRNISM--------VFQSYAVWPHM---TVYENIAFPLK-IK 111
Query: 505 SVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIM------LSGGQKQRIAIARALIK 558
K +I + A ++ ++ LSGGQ+QR+A+ARA++
Sbjct: 112 KFPKDEIDKRVRWAAE-------------LLQIEELLNRYPAQLSGGQRQRVAVARAIVV 158
Query: 559 KSKILLLDEATSALDAENEYL-VQ--SAIEKLIE--GKTVL----------TIAHRLSTI 603
+ +LL+DE S LDA+ L V + I+KL + T + T+ R
Sbjct: 159 EPDVLLMDEPLSNLDAK---LRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDR---- 211
Query: 604 RKSNQICVLDKGKIVEIGSYAHLIKNPNSMF 634
I V+++G++++IGS + PNS+F
Sbjct: 212 -----IAVMNRGQLLQIGSPTEVYLRPNSVF 237
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport,
maltose uptake and regulation, sugar binding protein;
1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3
c.37.1.12 PDB: 2d62_A
Length = 372
Score = 80.7 bits (200), Expect = 2e-16
Identities = 61/269 (22%), Positives = 116/269 (43%), Gaps = 69/269 (25%)
Query: 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLR----LYDP 454
+ ++ + + + ++SL+++ G ++G SG GK+T LR L +P
Sbjct: 3 GVRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTT----LRMIAGLEEP 55
Query: 455 QNGKILIDGVDIKELDPMYLRS----QIGSVSQE----PTLFSGTIYENILYGVNDSSSV 506
G+I I + + + I V Q P + T+Y+NI + + V
Sbjct: 56 SRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHM---TVYDNIAFPLK-LRKV 111
Query: 507 TKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIM------LSGGQKQRIAIARALIKKS 560
+ +I +E ++G ++ LSGGQ+QR+A+ RA+++K
Sbjct: 112 PRQEIDQRVREVAE-------------LLGLTELLNRKPRELSGGQRQRVALGRAIVRKP 158
Query: 561 KILLLDEATSALDAENEYL-VQ--SAIEKLIE--GKTVL----------TIAHRLSTIRK 605
++ L+DE S LDA+ L V+ + ++KL G T + T+ R
Sbjct: 159 QVFLMDEPLSNLDAK---LRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDR------ 209
Query: 606 SNQICVLDKGKIVEIGSYAHLIKNPNSMF 634
I V+++G + ++GS + P + F
Sbjct: 210 ---IAVMNRGVLQQVGSPDEVYDKPANTF 235
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 77.6 bits (190), Expect = 6e-15
Identities = 100/655 (15%), Positives = 213/655 (32%), Gaps = 196/655 (29%)
Query: 8 LSKKIYKNLFFNKS------LAFKIISHKP------FSKWKLQNNEKIISRYYTSTPNNQ 55
LSK+ ++ +K F + K F + L+ N K + +
Sbjct: 46 LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQP 105
Query: 56 KVGTKIKKSELKKLFT----LAK------SEKRKLTGAVCLLLVSSSIT---MAVPFALG 102
+ T++ + +L+ AK KL A+ L + ++ + G
Sbjct: 106 SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL---GSG 162
Query: 103 KVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVYLMNV----SAQSITKKLRE 158
K T ++L + L + V C +++ +N+ S +++ + L +
Sbjct: 163 K-----------------TWVALDVCLSYKV-QCKMDFKIFWLNLKNCNSPETVLEML-Q 203
Query: 159 RLFGSIISQETAYFD-----KHKTGELINRISADTSLVSQCVTQN---ISDGLRSTVMVS 210
+L I T+ D K + + + L+ +N + +++ +
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR---RLLKSKPYENCLLVLLNVQNAKAWN 260
Query: 211 AGVSMMFIISSKLALISLIIVPPVAGLAIVYGKFVRKITRNVQDKLANAVQVAEE-RISN 269
A F +S K I++ TR Q + + + A IS
Sbjct: 261 A-----FNLSCK------ILL----------------TTRFKQ--VTDFLSAATTTHISL 291
Query: 270 IRTVKSFSQ-EKLEM--SHFNAKMDDLFELAKKEALAKGVFFGFTGLSGNAIILSVL--- 323
+ + E + + + + DL +E L+ N LS++
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQDL----PREV-----------LTTNPRRLSIIAES 336
Query: 324 ---------YYGGVMVSYETIT------VGNLSSFLLYAAYIGISIGGLSNFYSELN--- 365
+ V+ + +T + L + +S+ F +
Sbjct: 337 IRDGLATWDNW--KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV-----FPPSAHIPT 389
Query: 366 KGLGACHRLW-EIMEREPLISTSGGKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLK 424
L +W ++++ + ++ + K +SL E S PS I +L +K
Sbjct: 390 ILLS---LIWFDVIKSDVMVVVN--KLHKYSLV-EKQPKESTISIPS-----IYLELKVK 438
Query: 425 IQSGSMTSVIGSSGSGKSTLAMLLLRLYDP----QNGKILIDGVDIKELDPMYLRSQIG- 479
+ + L ++ Y+ + ++ +D Y S IG
Sbjct: 439 L-------------ENEYALHRSIVDHYNIPKTFDSDDLIPPYLD------QYFYSHIGH 479
Query: 480 -----SVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTI 534
+ TLF ++ + + + I H + NA G +++
Sbjct: 480 HLKNIEHPERMTLFR-MVFLDFRF--------LEQKIRHDSTAWNASGSILNTLQQLKFY 530
Query: 535 VGERGIMLSGGQKQRI--AIARALIKKSKILLLDEATS----ALDAENEYLVQSA 583
+ I + + +R+ AI L K + L+ + T AL AE+E + + A
Sbjct: 531 --KPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEA 583
Score = 59.9 bits (144), Expect = 2e-09
Identities = 77/451 (17%), Positives = 131/451 (29%), Gaps = 156/451 (34%)
Query: 243 KFVRKI-TRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFE--LAKK 299
FV ++VQD + + E I +I + + LF L+K+
Sbjct: 28 AFVDNFDCKDVQDMPKSILSKEE--IDHI----------IMSKDAVSGTLRLFWTLLSKQ 75
Query: 300 EALAKGVFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSN 359
E + + F L N Y +M I ++ YI
Sbjct: 76 EEMVQ-KFVE-EVLRIN--------YKFLM---SPIKTEQRQPSMMTRMYI--------- 113
Query: 360 FYSELNKGLGACHRLWEIMEREPLISTSGGKFFSHSLKGEIDFNNIRFSYPSRPDAVI-L 418
+ + RL+ + + F+ K + SR + L
Sbjct: 114 --EQRD-------RLY-----------NDNQVFA---KYNV----------SRLQPYLKL 140
Query: 419 NDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQN-----------GKILIDGVDIK 467
L+++ + G GSGK+ +A+ + Y Q ++
Sbjct: 141 RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE 200
Query: 468 EL-------DPMY---------LRSQIGSVSQEP-TLFSGTIYEN---ILYGVNDSSSVT 507
L DP + ++ +I S+ E L YEN +L V ++ +
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW- 259
Query: 508 KSDIIHAAKEANAYGFVIDFKNGFD----TIVGERGI----MLSGGQKQRIAIARALIKK 559
N F+ ++ R LS I +L
Sbjct: 260 ---------------------NAFNLSCKILLTTRFKQVTDFLSAATTTHI----SLDHH 294
Query: 560 SKILLLDEATSALDAENEYLVQSAIEKL-IEGKTV--LTIA-------HRLSTIRKSNQI 609
S L DE S L +YL + L E T ++ L+T +
Sbjct: 295 SMTLTPDEVKSLL---LKYLDCR-PQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV 350
Query: 610 CVLDKGKIVEIGSYAHLIKNPN---SMFNKL 637
I+E S L P MF++L
Sbjct: 351 NCDKLTTIIES-SLNVL--EPAEYRKMFDRL 378
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral
membrane protein, ATPase, ABC transporter, membrane
transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia
coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A*
3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Length = 381
Score = 73.7 bits (182), Expect = 3e-14
Identities = 72/272 (26%), Positives = 112/272 (41%), Gaps = 81/272 (29%)
Query: 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLR----LYDP 454
+ N+ ++ + V+ D++L I G +G SG GKST LLR L
Sbjct: 3 SVQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKST----LLRMIAGLETI 55
Query: 455 QNGKILIDGVDIKELDPMYLRSQIGSVSQE----PTLFSGTIYENILYGVNDSSSVTKSD 510
+G + I + + P +G V Q P L ++ EN+ +G+
Sbjct: 56 TSGDLFIGEKRMNDTPPA--ERGVGMVFQSYALYPHL---SVAENMSFGL---------K 101
Query: 511 IIHAAKEANAYGFVIDFKNGFDTIVGERGIML-------------SGGQKQRIAIARALI 557
+ A KE VI+ + V + +L SGGQ+QR+AI R L+
Sbjct: 102 LAGAKKE------VINQR------VNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLV 149
Query: 558 KKSKILLLDEATSALDAENEYL-VQSAIE--KLIE--GKTVL----------TIAHRLST 602
+ + LLDE S LDA L VQ IE +L + G+T++ T+A +
Sbjct: 150 AEPSVFLLDEPLSNLDAA---LRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADK--- 203
Query: 603 IRKSNQICVLDKGKIVEIGSYAHLIKNPNSMF 634
I VLD G++ ++G L P F
Sbjct: 204 ------IVVLDAGRVAQVGKPLELYHYPADRF 229
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 74.3 bits (182), Expect = 7e-14
Identities = 51/205 (24%), Positives = 81/205 (39%), Gaps = 43/205 (20%)
Query: 401 DFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKIL 460
D N FS ++LN L+++ + G +G GKSTL +R
Sbjct: 435 DLCNCEFSLA-YGAKILLNKTQLRLKRARRYGICGPNGCGKSTL----MRA--------- 480
Query: 461 IDGVDIKELDPMYLRSQIGSVSQEPTLFSG--TIYENILYGVNDSSSVTKSDIIHAAKEA 518
I + + P + V + ++ + V +S TK I +
Sbjct: 481 IANGQV-DGFPTQEECRTVYVEHDIDGTHSDTSVLDF----VFESGVGTKEAI---KDKL 532
Query: 519 NAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAEN-- 576
+GF + + LSGG K ++A+ARA+++ + ILLLDE T+ LD N
Sbjct: 533 IEFGFTDEM---IAMPISA----LSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVA 585
Query: 577 ---EYLVQSAIEKLIEGKTVLTIAH 598
YL G T +TI+H
Sbjct: 586 WLVNYLNTC-------GITSITISH 603
Score = 55.4 bits (133), Expect = 4e-08
Identities = 19/98 (19%), Positives = 46/98 (46%), Gaps = 7/98 (7%)
Query: 522 GFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQ 581
+D + + + LSGGQK ++ +A ++ +++LDE T+ LD ++ +
Sbjct: 886 MLGLDPEIVSHSRIRG----LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALS 941
Query: 582 SAIEKLIEGKTVLTIAHRLSTIRK-SNQICVLDKGKIV 618
A+++ V+ I H + + ++ + G++
Sbjct: 942 KALKEF--EGGVIIITHSAEFTKNLTEEVWAVKDGRMT 977
Score = 50.4 bits (120), Expect = 2e-06
Identities = 31/208 (14%), Positives = 61/208 (29%), Gaps = 23/208 (11%)
Query: 403 NNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILID 462
N+ F YP + D++ + S +VIG +G+GKSTL +L P +G++
Sbjct: 675 TNMEFQYPG-TSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYT- 732
Query: 463 GVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYG 522
+ + I + Q + + T D +
Sbjct: 733 HENCR----------IAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQIN 782
Query: 523 F-----------VIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSA 571
+ I R + + + + KS+ + +
Sbjct: 783 ENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDN 842
Query: 572 LDAENEYLVQSAIEKLIEGKTVLTIAHR 599
LV+S + + E +A
Sbjct: 843 AWIPRGELVESHSKMVAEVDMKEALASG 870
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, binding; 1.70A {Thermus thermophilus} PDB:
2d2f_A*
Length = 250
Score = 57.1 bits (139), Expect = 3e-09
Identities = 58/223 (26%), Positives = 99/223 (44%), Gaps = 32/223 (14%)
Query: 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLL--RLYDPQNGKILIDGVDIKELDPMYL 474
IL ++L + G + +++G +G+GKSTL +L Y + G+IL+DG +I EL P
Sbjct: 18 ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSP-DE 76
Query: 475 RSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAA------KEANAYGFVIDFK 528
R++ G LF Y + G VT ++ + A +E F K
Sbjct: 77 RARKG-------LFLAFQYPVEVPG------VTIANFLRLALQAKLGREVGVAEFWTKVK 123
Query: 529 N-----GFDTIVGERGIM--LSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQ 581
+D R + SGG+K+R I + L+ + +LDE S LD + +V
Sbjct: 124 KALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVA 183
Query: 582 SAIEKLI-EGKTVLTIAH--RLSTIRKSNQICVLDKGKIVEIG 621
+ + L I H R+ + +++ V+ G++V G
Sbjct: 184 RGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATG 226
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster,
ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding;
HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Length = 267
Score = 56.8 bits (138), Expect = 5e-09
Identities = 52/221 (23%), Positives = 98/221 (44%), Gaps = 24/221 (10%)
Query: 417 ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLL--RLYDPQNGKILIDGVDIKELDPMYL 474
IL LSL + G + +++G +GSGKSTL+ L Y+ G + G D+ L P
Sbjct: 35 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSP-ED 93
Query: 475 RSQIGSVSQEPTLFSGTIYENILYGVNDS----SSVTKSDIIHAAKEANAYGFVIDFKN- 529
R+ G +F Y + GV++ +++ + + + F +
Sbjct: 94 RAGEG-------IFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEK 146
Query: 530 ----GFDTIVGERGIM--LSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSA 583
+ R + SGG+K+R I + + + ++ +LDE+ S LD + +V
Sbjct: 147 IALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADG 206
Query: 584 IEKLI-EGKTVLTIAH--RLSTIRKSNQICVLDKGKIVEIG 621
+ L ++ + + H R+ K + + VL +G+IV+ G
Sbjct: 207 VNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSG 247
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATP binding, DNA bindi MRE11, replication;
HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A*
1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Length = 339
Score = 53.1 bits (127), Expect = 1e-07
Identities = 25/167 (14%), Positives = 56/167 (33%), Gaps = 12/167 (7%)
Query: 461 IDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANA 520
+D + L+ G + ++ + + +
Sbjct: 163 LDKFETAYKKLSELKGGSGGTEELIEKVKKYKALAREAALSKIGELASEIFAEFTEGKYS 222
Query: 521 YGFVIDFKNGFDTIVGERGI-----MLSGGQKQ------RIAIARALIKKSKILLLDEAT 569
V +N V G LSGG++ R+A++ L + +L+LDE T
Sbjct: 223 EVVVRAEENKVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPT 282
Query: 570 SALDAENEYLVQSAIEKLIE-GKTVLTIAHRLSTIRKSNQICVLDKG 615
LD E + + +E+ ++ V+ ++H ++ + +
Sbjct: 283 PYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIRISLE 329
Score = 30.0 bits (67), Expect = 2.4
Identities = 10/27 (37%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTL 444
+D ++ + G + +IG +GSGKS+L
Sbjct: 14 HSDTVVEFKEG-INLIIGQNGSGKSSL 39
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 53.1 bits (127), Expect = 3e-07
Identities = 91/582 (15%), Positives = 160/582 (27%), Gaps = 218/582 (37%)
Query: 90 SSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSLLLMLVFVVGACCNFGRVYL----- 144
++ + F LG Y S E K+ +L L F YL
Sbjct: 55 TTPAELVGKF-LG------YVSSLVE-PSKVGQFDQVLNLCL-----TEFENCYLEGNDI 101
Query: 145 ----------------------------MNVSAQSITKKLRERLFGSIISQET------- 169
++ + KK LF ++
Sbjct: 102 HALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFG 161
Query: 170 ------AYFDK----HKT-----GELINRISAD-TSLVSQCVTQN--ISDGL-------- 203
YF++ ++T G+LI + + L+ + + GL
Sbjct: 162 GQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLEN 221
Query: 204 RSTV-----MVSAGVSMMFIISSKLALISL---IIVPPVAGLAIVYGKFVRKI---TRNV 252
S ++S +S I +I L ++ + G G+ + T +
Sbjct: 222 PSNTPDKDYLLSIPISCPLI-----GVIQLAHYVVTAKLLGFT--PGELRSYLKGATGHS 274
Query: 253 QDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFE--LAKKEALAKGVFFGF 310
Q + AV +AE + +SF + LF + EA +
Sbjct: 275 QGLVT-AVAIAETD-----SWESFFVSVRKAITV------LFFIGVRCYEA------YPN 316
Query: 311 TGLSGNAIILSVLYYGGV---MVSYETITVGNLSSFLLY-------AAYIGIS-IGGLSN 359
T L + + S+ GV M+S +T + ++ + IS + G N
Sbjct: 317 TSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKN 376
Query: 360 F-----YSELNKGLGACHRLWEIM-------------EREPLISTSGGKF------FSHS 395
L GL L + ER+ S F F HS
Sbjct: 377 LVVSGPPQSL-YGL--NLTLRKAKAPSGLDQSRIPFSERKLKFSNR---FLPVASPF-HS 429
Query: 396 LKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQ 455
+I DL S + K + + +YD
Sbjct: 430 ------------HLLVPASDLINKDLVKN----------NVSFNAKD----IQIPVYDTF 463
Query: 456 NGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVN-DSSSVTKSDIIHA 514
DG D++ L + + + P V +++ T+ H
Sbjct: 464 ------DGSDLRVLSGSISERIVDCIIRLP--------------VKWETT--TQFKATH- 500
Query: 515 AKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARAL 556
++DF G + +G G R+ +A L
Sbjct: 501 ---------ILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTL 533
Score = 45.0 bits (106), Expect = 8e-05
Identities = 42/229 (18%), Positives = 74/229 (32%), Gaps = 64/229 (27%)
Query: 435 GS--SGSGKSTLAMLLLRLYD-PQNGKILIDGVDIKELDPMYLRSQIGSVSQEPT----L 487
GS G G LY + + + + D Y S + V P
Sbjct: 1625 GSQEQGMGMD--------LYKTSKAAQDVWNRAD-NHFKDTYGFSILDIVINNPVNLTIH 1675
Query: 488 FSGT----IYEN---ILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERG- 539
F G I EN +++ + I KE N + F+ E+G
Sbjct: 1676 FGGEKGKRIRENYSAMIFETIVDGKLKTEKIF---KEINEHSTSYTFR-------SEKGL 1725
Query: 540 ----------IMLSGGQKQRIAIARALIKKSKILLLDEAT---------SALDAENEYL- 579
+ L A L KSK L+ +AT +AL + + +
Sbjct: 1726 LSATQFTQPALTLME-----KAAFEDL--KSKGLIPADATFAGHSLGEYAALASLADVMS 1778
Query: 580 VQSAIEKLIE--GKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHL 626
++S + +++ G T+ R R + + ++ G++ S L
Sbjct: 1779 IESLV-EVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEAL 1826
Score = 45.0 bits (106), Expect = 8e-05
Identities = 52/324 (16%), Positives = 101/324 (31%), Gaps = 106/324 (32%)
Query: 1 MALYCCHLSKKIYKNLF------FNKSLAF---KIISHKPFSKWKL---QNNEKIISRY- 47
M LY + K ++++ F + F I+ + P + + ++I Y
Sbjct: 1633 MDLY---KTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYS 1689
Query: 48 ---YTSTPNNQKVGTKIKKSELKKLFTLA-KSEKRKL--TGA--VCLLLVSSSITMA--- 96
+ + + + KI K + + +SEK L T L L+ +
Sbjct: 1690 AMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKS 1749
Query: 97 ---VP----FA---LGKVIDVIYT-----SDKKEMKEKMTSLSL--LLMLVFVVGACCNF 139
+P FA LG+ Y +D +S+ L+ +VF G
Sbjct: 1750 KGLIPADATFAGHSLGE-----YAALASLAD---------VMSIESLVEVVFYRGM---- 1791
Query: 140 GRVYLMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELINRISADTSLVSQCVTQNI 199
+ + + + + A F + ++ R+ T + + V N+
Sbjct: 1792 ---TMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNV 1848
Query: 200 SDGLRSTVMVSAGVSMMFIISSKLALISLIIVPPVAGLAIVYGKFVRKITRNVQDKLANA 259
+ V+AG AL D + N
Sbjct: 1849 EN---QQY-VAAG--------DLRAL----------------------------DTVTNV 1868
Query: 260 V-QVAEERISNIRTVKSFSQEKLE 282
+ + ++I I KS S E++E
Sbjct: 1869 LNFIKLQKIDIIELQKSLSLEEVE 1892
Score = 33.5 bits (76), Expect = 0.30
Identities = 28/140 (20%), Positives = 41/140 (29%), Gaps = 56/140 (40%)
Query: 504 SSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQK---------QRI---- 550
+ S + A E NA I F GGQ + +
Sbjct: 138 DKKSNSALFRAVGEGNAQLVAI-----F------------GGQGNTDDYFEELRDLYQTY 180
Query: 551 -AIARALIKKSKILLLDEATSALDAE---------------------NEYLVQSAIE-KL 587
+ LIK S L + + LDAE +YL+ I L
Sbjct: 181 HVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPL 240
Query: 588 IEGKTVLTIAHRLSTIRKSN 607
I V+ +AH + T +
Sbjct: 241 I---GVIQLAHYVVTAKLLG 257
Score = 30.8 bits (69), Expect = 1.7
Identities = 39/203 (19%), Positives = 68/203 (33%), Gaps = 71/203 (34%)
Query: 2 ALY--CCHLSKKIYKNLFFNKSLAFKIISHKPFSKWKLQNNEKIISRYY-TSTPNNQKVG 58
+LY L K K+ + S PFS+ KL K +R+ ++P +
Sbjct: 385 SLYGLNLTLRKA--------KAPSGLDQSRIPFSERKL----KFSNRFLPVASPFH---- 428
Query: 59 TKIKKSELKKLFTLAKSEKRKLTGAVCLL---LVSSSIT-----MAVPFALGKVIDVIYT 110
S L L A L+ LV ++++ + +P V T
Sbjct: 429 -----SHL-------------LVPASDLINKDLVKNNVSFNAKDIQIP--------VYDT 462
Query: 111 SDKKEMKEKMTSLSL-LLMLVFVVGACCNFGRVYLMNVSAQSITKKLRERLFG----SII 165
D +++ S+S ++ + + V + T L FG S +
Sbjct: 463 FDGSDLRVLSGSISERIVDCIIRL-------PVKWETTTQFKATHIL---DFGPGGASGL 512
Query: 166 SQETAYFDKHKTGELINRISADT 188
T ++K G + I A T
Sbjct: 513 GVLTH---RNKDGTGVRVIVAGT 532
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication;
1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B*
1us8_B*
Length = 148
Score = 49.0 bits (117), Expect = 4e-07
Identities = 18/83 (21%), Positives = 37/83 (44%), Gaps = 9/83 (10%)
Query: 541 MLSGGQKQRIAIA------RALIKKSKILLLDEATSALDAE-NEYLVQSAIEKLIE-GKT 592
LSGG++ + +A L + +L+LDE T LD E L+ +E+ ++
Sbjct: 57 FLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLIT-IMERYLKKIPQ 115
Query: 593 VLTIAHRLSTIRKSNQICVLDKG 615
V+ ++H ++ + +
Sbjct: 116 VILVSHDEELKDAADHVIRISLE 138
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC
transporter ATPase domain-like; HET: DNA ADP; 2.70A
{Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Length = 371
Score = 44.1 bits (104), Expect = 9e-05
Identities = 17/82 (20%), Positives = 33/82 (40%), Gaps = 7/82 (8%)
Query: 542 LSGGQKQRIAIARAL-------IKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVL 594
LSGG++ +A++ L + + ++LDE T LD + K+ ++
Sbjct: 281 LSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMI 340
Query: 595 TIAHRLSTIRKSNQICVLDKGK 616
I H ++ I + K
Sbjct: 341 IITHHRELEDVADVIINVKKDG 362
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga
maritima} PDB: 3qg5_A 3tho_A*
Length = 365
Score = 40.6 bits (95), Expect = 0.001
Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 7/64 (10%)
Query: 542 LSGGQKQRIAIARAL----IKKSKI--LLLDEATSALDAENEYLVQSAIEKLIE-GKTVL 594
LSGG++ I+I+ A+ + ++ +DE S+LD EN+ + S +++L K ++
Sbjct: 280 LSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIV 339
Query: 595 TIAH 598
I H
Sbjct: 340 FITH 343
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair,
nucleotide excision repai hydrolase-DNA complex; HET:
DNA; 2.90A {Thermotoga maritima}
Length = 916
Score = 40.1 bits (95), Expect = 0.002
Identities = 37/108 (34%), Positives = 53/108 (49%), Gaps = 24/108 (22%)
Query: 542 LSGGQKQRIAIARALIKKS--KIL-LLDEATSALDAENEYLVQSAIEKLIE--------G 590
LSGG+ QRI +A L K+ + L +LDE T L E+ + KL+E G
Sbjct: 806 LSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFED-------VRKLVEVLHRLVDRG 858
Query: 591 KTVLTIAHRLSTIRKSNQICVL-----DK-GKIVEIGSYAHLIKNPNS 632
TV+ I H L I+ ++ I L + G IV G+ + KNP+S
Sbjct: 859 NTVIVIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEIAKNPHS 906
Score = 37.8 bits (89), Expect = 0.011
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTL 444
L ++ ++I G V G SGSGKS+L
Sbjct: 600 LKNIDVEIPLGVFVCVTGVSGSGKSSL 626
Score = 30.1 bits (69), Expect = 3.2
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLA 445
L +++++I + + G SGSGKS+LA
Sbjct: 14 LKNITVRIPKNRLVVITGVSGSGKSSLA 41
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein,
nucleotide-binding, zinc-binding domain, SOS response,
metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans}
PDB: 2vf8_A*
Length = 842
Score = 39.8 bits (94), Expect = 0.003
Identities = 26/108 (24%), Positives = 50/108 (46%), Gaps = 24/108 (22%)
Query: 542 LSGGQKQRIAIARALIKKSK---ILLLDEATSALDAENEYLVQSAIEKLIE--------G 590
LSGG+ QRI +A L + + + +LDE T+ L + +E+L G
Sbjct: 731 LSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPAD-------VERLQRQLVKLVDAG 783
Query: 591 KTVLTIAHRLSTIRKSNQICVL-----DK-GKIVEIGSYAHLIKNPNS 632
TV+ + H++ + S+ + + + G++V G+ A + + S
Sbjct: 784 NTVIAVEHKMQVVAASDWVLDIGPGAGEDGGRLVAQGTPAEVAQAAGS 831
Score = 39.4 bits (93), Expect = 0.004
Identities = 16/27 (59%), Positives = 20/27 (74%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTL 444
L++L ++ G MTSV G SGSGKSTL
Sbjct: 513 LDNLDVRFPLGVMTSVTGVSGSGKSTL 539
Score = 30.6 bits (70), Expect = 1.9
Identities = 29/110 (26%), Positives = 51/110 (46%), Gaps = 27/110 (24%)
Query: 542 LSGGQKQRIAIARALIKKSKI---L-----LLDEATSAL-DAENEYLVQSAIEKLIE-GK 591
LS G+ QR+ +A +++ L +LDE ++ L A+ E L+ A+E L G
Sbjct: 380 LSPGELQRLRLA------TQLYSNLFGVVYVLDEPSAGLHPADTEALLS-ALENLKRGGN 432
Query: 592 TVLTIAHRLSTIRKSNQICVLDK--------GKIVEIGSYAHLIKNPNSM 633
++ + H L IR+++ ++D G+I+ G L P S
Sbjct: 433 SLFVVEHDLDVIRRAD--WLVDVGPEAGEKGGEILYSGPPEGLKHVPESQ 480
Score = 29.8 bits (68), Expect = 3.2
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLA 445
L D+S+K+ ++ G SGSGKS+LA
Sbjct: 26 LKDISVKVPRDALVVFTGVSGSGKSSLA 53
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair;
3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Length = 993
Score = 39.0 bits (92), Expect = 0.005
Identities = 33/108 (30%), Positives = 50/108 (46%), Gaps = 24/108 (22%)
Query: 542 LSGGQKQRIAIARALIKKS--KIL-LLDEATSALDAENEYLVQSAIEKLIE--------G 590
LSGG+ QR+ +A L K+S + + +LDE T+ L ++ I KL+ G
Sbjct: 864 LSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDD-------IRKLLNVINGLVDKG 916
Query: 591 KTVLTIAHRLSTIRKSNQICVL-----DK-GKIVEIGSYAHLIKNPNS 632
TV+ I H L I+ S+ I L G +V G+ + P S
Sbjct: 917 NTVIVIEHNLDVIKTSDWIIDLGPEGGAGGGTVVAQGTPEDVAAVPAS 964
Score = 38.3 bits (90), Expect = 0.010
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTL 444
L + + G +TSV G SGSGKSTL
Sbjct: 658 LRGIDVSFPLGVLTSVTGVSGSGKSTL 684
Score = 33.3 bits (77), Expect = 0.33
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLA 445
L + L + ++ G SGSGKS+LA
Sbjct: 36 LRSVDLDLPRDALIVFTGLSGSGKSSLA 63
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, at cassette, DNA damage, DNA
excision; HET: ADP; 3.20A {Geobacillus
stearothermophilus} PDB: 3uwx_A
Length = 972
Score = 39.0 bits (92), Expect = 0.006
Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 24/108 (22%)
Query: 542 LSGGQKQRIAIARALIKKS--KIL-LLDEATSALDAENEYLVQSAIEKLIE--------G 590
LSGG+ QR+ +A L ++S + L +LDE T+ L ++ I +L++ G
Sbjct: 846 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDD-------IARLLDVLHRLVDNG 898
Query: 591 KTVLTIAHRLSTIRKSNQICVL-----DK-GKIVEIGSYAHLIKNPNS 632
TVL I H L I+ ++ I L D+ G+IV +G+ + + S
Sbjct: 899 DTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEVKES 946
Score = 37.9 bits (89), Expect = 0.012
Identities = 15/27 (55%), Positives = 20/27 (74%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTL 444
L ++S+KI G+ +V G SGSGKSTL
Sbjct: 640 LKNVSVKIPLGTFVAVTGVSGSGKSTL 666
Score = 31.7 bits (73), Expect = 0.87
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLA 445
L ++ ++I G + + G SGSGKS+LA
Sbjct: 34 LKNIDVEIPRGKLVVLTGLSGSGKSSLA 61
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A
{Geobacillus}
Length = 670
Score = 38.3 bits (90), Expect = 0.007
Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 24/108 (22%)
Query: 542 LSGGQKQRIAIARALIKKS--KIL-LLDEATSALDAENEYLVQSAIEKLIE--------G 590
LSGG+ QR+ +A L ++S + L +LDE T+ L ++ I +L++ G
Sbjct: 544 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDD-------IARLLDVLHRLVDNG 596
Query: 591 KTVLTIAHRLSTIRKSNQICVL-----DK-GKIVEIGSYAHLIKNPNS 632
TVL I H L I+ ++ I L D+ G+IV +G+ + + S
Sbjct: 597 DTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEVKES 644
Score = 37.9 bits (89), Expect = 0.010
Identities = 15/27 (55%), Positives = 20/27 (74%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTL 444
L ++S+KI G+ +V G SGSGKSTL
Sbjct: 338 LKNVSVKIPLGTFVAVTGVSGSGKSTL 364
Score = 29.0 bits (66), Expect = 5.1
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLA 445
L ++ ++I G + + G SGSGKS+LA
Sbjct: 34 LKNIDVEIPRGKLVVLTGLSGSGKSSLA 61
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A
{Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Length = 287
Score = 35.4 bits (80), Expect = 0.045
Identities = 20/106 (18%), Positives = 32/106 (30%), Gaps = 13/106 (12%)
Query: 433 VIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMY--LRSQIGSVSQEPT---- 486
+ G GSGK++L + I+ID K+ P + L +
Sbjct: 38 LGGQPGSGKTSLRSAIFEETQG--NVIVIDNDTFKQQHPNFDELVKLYEKDVVKHVTPYS 95
Query: 487 --LFSGTIYENILYGVN---DSSSVTKSDIIHAAKEANAYGFVIDF 527
+ I G N + + T I A A G+
Sbjct: 96 NRMTEAIISRLSDQGYNLVIEGTGRTTDVPIQTATMLQAKGYETKM 141
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL
helix motif, transcription regulator; 3.20A
{Streptococcus pneumoniae}
Length = 253
Score = 35.3 bits (80), Expect = 0.046
Identities = 19/106 (17%), Positives = 42/106 (39%), Gaps = 13/106 (12%)
Query: 433 VIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMY---LRSQIGSVSQEPTLFS 489
+ G SG+GK+T+ + + + Q ++IDG + P Y + + F+
Sbjct: 37 LGGQSGAGKTTIHRIKQK--EFQGNIVIIDGDSFRSQHPHYLELQQEYGKDSVEYTKDFA 94
Query: 490 GTIYENIL-------YGVN-DSSSVTKSDIIHAAKEANAYGFVIDF 527
G + E+++ Y + + + T A+ G+ +
Sbjct: 95 GKMVESLVTKLSSLGYNLLIEGTLRTVDVPKKTAQLLKNKGYEVQL 140
>2vli_A Antibiotic resistance protein; transferase, tunicamycin,
phosphotransferase; 1.95A {Deinococcus radiodurans}
Length = 183
Score = 34.2 bits (78), Expect = 0.064
Identities = 15/81 (18%), Positives = 24/81 (29%), Gaps = 22/81 (27%)
Query: 410 PSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLR------LYDP-QNGKILID 462
P R + +N G G GK+ A L +++P + G+ L
Sbjct: 2 PMRSPIIWIN---------------GPFGVGKTHTAHTLHERLPGSFVFEPEEMGQALRK 46
Query: 463 GVDIKELDPMYLRSQIGSVSQ 483
DP I +
Sbjct: 47 LTPGFSGDPQEHPMWIPLMLD 67
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P;
hydrolase, type IV secretion, conjugation; 2.35A
{Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Length = 392
Score = 34.6 bits (79), Expect = 0.091
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 433 VIGSSGSGKSTLAMLLLRLYDPQNGKILI 461
++ G+GKS A +LL Q +++I
Sbjct: 40 ILAKPGAGKSFTAKMLLLREYMQGSRVII 68
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate
hydrolases fold, S genomics, joint center for structural
genomics, JCSG; HET: MSE; 1.70A {Chloroflexus
aurantiacus}
Length = 193
Score = 33.4 bits (76), Expect = 0.13
Identities = 10/36 (27%), Positives = 14/36 (38%), Gaps = 4/36 (11%)
Query: 433 VIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKE 468
V G +GK+TL+ L L+ KE
Sbjct: 10 VTGHPATGKTTLSQALATGL----RLPLLSKDAFKE 41
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural
genomics, PSI, protein struc initiative; 3.20A
{Agrobacterium tumefaciens str} SCOP: c.37.1.25
Length = 191
Score = 33.1 bits (75), Expect = 0.16
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 427 SGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKEL 469
G++ + G GSGKST+A L L K+ D+
Sbjct: 8 GGNILLLSGHPGSGKSTIAEALANLPGVP--KVHFHSDDLWGY 48
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Length = 235
Score = 33.4 bits (77), Expect = 0.18
Identities = 5/19 (26%), Positives = 11/19 (57%)
Query: 428 GSMTSVIGSSGSGKSTLAM 446
G ++ G G+GK+ ++
Sbjct: 23 GFFIALTGEPGTGKTIFSL 41
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system
kinase, STRU genomics, joint center for structural
genomics, JCSG; 1.95A {Silicibacter SP}
Length = 208
Score = 32.8 bits (75), Expect = 0.20
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 433 VIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVD 465
+ G+ GSGKSTL+ L Q + +D
Sbjct: 27 LSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMD 59
>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011,
serine hydroxymethyltransfera salmonella typhimurium.;
HET: MSE; 1.80A {Salmonella typhimurium} PDB: 1dfo_A*
3g8m_A* 1eqb_A*
Length = 420
Score = 33.3 bits (77), Expect = 0.22
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 9/50 (18%)
Query: 488 FSGTIYENILYGVNDSSSVTKSDIIHAAKE---------ANAYGFVIDFK 528
FSG +Y + YG+++S + ++ AKE +AY V+D+
Sbjct: 138 FSGKLYNIVPYGIDESGKIDYDEMAKLAKEHKPKMIIGGFSAYSGVVDWA 187
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer,
structural genomics; HET: ADP; 2.00A {Pyrococcus
horikoshii}
Length = 247
Score = 32.7 bits (75), Expect = 0.31
Identities = 4/19 (21%), Positives = 10/19 (52%)
Query: 428 GSMTSVIGSSGSGKSTLAM 446
++ + G G+GK+ +
Sbjct: 23 RNVVLLSGGPGTGKTIFSQ 41
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase,
antibiotic resistance, phosphorylation, mononucleoti
binding fold; HET: ATP; 2.50A {Streptomyces venezuelae}
SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A*
1qhy_A*
Length = 178
Score = 31.7 bits (71), Expect = 0.39
Identities = 7/31 (22%), Positives = 12/31 (38%)
Query: 435 GSSGSGKSTLAMLLLRLYDPQNGKILIDGVD 465
G S +GKS + L + +D +
Sbjct: 10 GGSSAGKSGIVRCLQSVLPEPWLAFGVDSLI 40
>3pfe_A Succinyl-diaminopimelate desuccinylase; metal binding, merops M20
familiy, phosphorylase/hydrolase-L structural genomics;
HET: MSE; 1.50A {Legionella pneumophila subsp}
Length = 472
Score = 32.3 bits (74), Expect = 0.47
Identities = 7/30 (23%), Positives = 12/30 (40%), Gaps = 2/30 (6%)
Query: 444 LAMLLLRLYDPQNGKILIDG--VDIKELDP 471
L+ R+ D G+I + DI +
Sbjct: 239 ARQLISRIEDENTGEIKLPQLYCDIPDERI 268
>3kta_B Chromosome segregation protein SMC; structural maintenance of
chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A,
transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB:
1xew_Y 1xex_B*
Length = 173
Score = 31.5 bits (72), Expect = 0.52
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
Query: 541 MLSGGQKQRIAIARA----LIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTI 596
+SGG+K A+A K + L DE + LD N V I++ + + I
Sbjct: 64 AMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVI 123
Query: 597 AHRLSTIRKSNQI 609
R + +++I
Sbjct: 124 TLRDVMMANADKI 136
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A
{Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A
1ko5_A* 1ko8_A* 1kof_A*
Length = 175
Score = 31.5 bits (71), Expect = 0.53
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
Query: 433 VIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDI 466
++G SGSGKS +A + Q +DG +
Sbjct: 13 LMGVSGSGKSAVASEVAH----QLHAAFLDGDFL 42
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop,
transferase; HET: ADP; 2.33A {Enterobacteria phage T4}
SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A*
2ia5_A
Length = 301
Score = 32.0 bits (72), Expect = 0.55
Identities = 10/24 (41%), Positives = 12/24 (50%), Gaps = 3/24 (12%)
Query: 430 MTSVI---GSSGSGKSTLAMLLLR 450
M +I G GSGKST A +
Sbjct: 1 MKKIILTIGCPGSGKSTWAREFIA 24
>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA)
sandwich, CSGI transferase, structural genomics; HET:
MSE; 1.80A {Campylobacter jejuni}
Length = 417
Score = 32.2 bits (74), Expect = 0.58
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 9/50 (18%)
Query: 488 FSGTIYENILYGVNDSSSVTKSDIIHAAKE---------ANAYGFVIDFK 528
SG +YE+ YGV + + AK+ A+AY VIDF
Sbjct: 133 SSGKMYESCFYGVELDGRIDYEKVREIAKKEKPKLIVCGASAYARVIDFA 182
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure
initiati YORK structural genomics research consortium,
nysgrc; 2.20A {Sinorhizobium meliloti}
Length = 202
Score = 31.2 bits (70), Expect = 0.73
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 433 VIGSSGSGKSTLAMLL 448
V+G SGSGKS++ +
Sbjct: 23 VMGVSGSGKSSVGEAI 38
>2cvh_A DNA repair and recombination protein RADB; filament formation,
homologous recombination, ATPase domain,
hyperthermophIle; HET: DNA; 2.20A {Thermococcus
kodakarensis} PDB: 2cvf_A*
Length = 220
Score = 31.4 bits (72), Expect = 0.76
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 4/40 (10%)
Query: 425 IQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKIL-IDG 463
G +T V G SGK+T L L+ K+ +D
Sbjct: 17 FAPGVLTQVYGPYASGKTT---LALQTGLLSGKKVAYVDT 53
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP;
2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB:
3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A*
3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Length = 525
Score = 31.8 bits (72), Expect = 0.76
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 428 GSMTSVIGSSGSGKSTLAM 446
G T V G+SG+GK+ ++
Sbjct: 39 GRSTLVSGTSGTGKTLFSI 57
Score = 31.4 bits (71), Expect = 0.97
Identities = 6/26 (23%), Positives = 12/26 (46%)
Query: 425 IQSGSMTSVIGSSGSGKSTLAMLLLR 450
S+ G++G+GK+ L +
Sbjct: 278 FFKDSIILATGATGTGKTLLVSRFVE 303
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate
metabolism, magnesium, metal-binding, multifunctional
enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A
1kkm_A*
Length = 205
Score = 31.1 bits (70), Expect = 0.84
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 7/44 (15%)
Query: 433 VIGSSGSGKSTLAMLLLRLYDPQNGKILI--DGVDIKELDPMYL 474
+ G SG GKS A+ L+ Q G LI D VD+ + D +
Sbjct: 39 ITGDSGVGKSETALELV-----QRGHRLIADDRVDVYQQDEQTI 77
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function
initiative, EFI, STRU genomics, transferase; 1.60A
{Janibacter SP}
Length = 200
Score = 30.8 bits (69), Expect = 0.86
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 433 VIGSSGSGKSTLAMLL 448
V+G SGSGK+T+A +
Sbjct: 34 VMGVSGSGKTTIAHGV 49
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein
struct initiative, northeast structural genomics
consortium, NESG, function; 2.40A {Bacillus halodurans}
SCOP: c.37.1.25
Length = 189
Score = 30.7 bits (69), Expect = 0.91
Identities = 11/42 (26%), Positives = 15/42 (35%), Gaps = 6/42 (14%)
Query: 430 MTSVI---GSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKE 468
M + G +G GKST L + I+G I
Sbjct: 1 MKKLYIITGPAGVGKSTTCKRLAAQL---DNSAYIEGDIINH 39
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function;
HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Length = 251
Score = 31.0 bits (70), Expect = 0.94
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 428 GSMTSVIGSSGSGKSTLAM 446
G+ + G +G+GK+T A
Sbjct: 30 GTTVLLTGGTGTGKTTFAA 48
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding,
viral nucleoprotein, endoplasmic reticulum, helicase,
hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A*
2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A
2bhr_A
Length = 451
Score = 31.4 bits (71), Expect = 0.98
Identities = 10/53 (18%), Positives = 22/53 (41%), Gaps = 4/53 (7%)
Query: 410 PSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAML-LLRLYDPQNGKILI 461
PD + D+ + +T + G+GK+ + ++R + + LI
Sbjct: 4 MGEPDYEVDEDI---FRKKRLTIMDLHPGAGKTKRILPSIVREALLRRLRTLI 53
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A
{Enterobacteria phage T4} SCOP: c.37.1.1
Length = 181
Score = 30.5 bits (69), Expect = 0.99
Identities = 10/24 (41%), Positives = 12/24 (50%), Gaps = 3/24 (12%)
Query: 430 MTSVI---GSSGSGKSTLAMLLLR 450
M +I G GSGKST A +
Sbjct: 1 MKKIILTIGCPGSGKSTWAREFIA 24
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural
changes, replication; 1.95A {Escherichia coli} SCOP:
c.37.1.11 PDB: 1g8y_A 1olo_A
Length = 279
Score = 31.2 bits (70), Expect = 1.0
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 428 GSMTSVIGSSGSGKSTLAMLL 448
G++ +++ G+GKS LA+ L
Sbjct: 30 GTVGALVSPGGAGKSMLALQL 50
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic
subunit]; helicase, flavivirus, DEAD-BOX, ATPase,
rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP:
c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Length = 440
Score = 31.3 bits (71), Expect = 1.0
Identities = 7/38 (18%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 425 IQSGSMTSVIGSSGSGKSTLAML-LLRLYDPQNGKILI 461
++ G T + G+GK+ + +L + + L+
Sbjct: 5 LKKGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLV 42
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding
motif, ATP- binding, nucleotide-binding, transferase;
HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB:
3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Length = 260
Score = 31.0 bits (70), Expect = 1.1
Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 433 VIGSSGSGKSTLAMLLLR-LYDPQNGKILIDGVDIKELDPMY 473
+ G G GKST + L + L I++ I+E P++
Sbjct: 9 LTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFPVW 50
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1;
transferase, ATP sulfurylase, APS kinase, PAPS; HET:
ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5
c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Length = 630
Score = 31.3 bits (71), Expect = 1.2
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 435 GSSGSGKSTLAMLL-LRLYDPQNGKILIDG 463
G SG+GK+T++M L L +DG
Sbjct: 59 GLSGAGKTTVSMALEEYLVCHGIPCYTLDG 88
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met
nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A
{Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A*
1m7h_A* 3cr7_A*
Length = 211
Score = 30.7 bits (70), Expect = 1.2
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 6/33 (18%)
Query: 435 GSSGSGKSTLAMLL-LRLYDPQNGKI---LIDG 463
G S SGKSTLA+ L +L ++ ++ +DG
Sbjct: 32 GLSASGKSTLAVELEHQLV--RDRRVHAYRLDG 62
>3pvs_A Replication-associated recombination protein A; maintenance of
genome stability Pro recombination; 2.50A {Escherichia
coli}
Length = 447
Score = 31.0 bits (71), Expect = 1.3
Identities = 11/26 (42%), Positives = 19/26 (73%), Gaps = 2/26 (7%)
Query: 425 IQSGSMTSVI--GSSGSGKSTLAMLL 448
I++G + S+I G G+GK+TLA ++
Sbjct: 45 IEAGHLHSMILWGPPGTGKTTLAEVI 70
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1
(PAPS synthetase...; NMP-kinase fold, protein in complex
with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens}
PDB: 2pey_A* 2ax4_A*
Length = 179
Score = 30.2 bits (69), Expect = 1.3
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 435 GSSGSGKSTLAMLL-LRLYDPQNGKILIDG 463
G SG+GK+T++M L L +DG
Sbjct: 12 GLSGAGKTTVSMALEEYLVCHGIPCYTLDG 41
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter
sphaeroides} SCOP: c.37.1.6
Length = 290
Score = 30.8 bits (69), Expect = 1.3
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 432 SVIGSSGSGKSTLAMLLLRLYDPQNGKILI 461
SV GSSG+G ST+ +++ + K +
Sbjct: 9 SVTGSSGAGTSTVKHTFDQIFRREGVKAVS 38
>3h36_A Polyribonucleotide nucleotidyltransferase; polyribonucleotide
nucleotidyltransfer structural genomics, PSI-2, protein
structure initiative; 1.80A {Streptococcus mutans}
Length = 93
Score = 28.9 bits (65), Expect = 1.3
Identities = 10/65 (15%), Positives = 19/65 (29%), Gaps = 7/65 (10%)
Query: 245 VRKITRNVQDKLANAVQVAE--ERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEAL 302
+I L AVQ+ E VK E + + + + + E +
Sbjct: 14 QAEIVGKYNADLQKAVQIEEKKASEIATEAVK----EHV-TAEYEERYAEHEEHDRIMRD 68
Query: 303 AKGVF 307
+
Sbjct: 69 VAEIL 73
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI,
protein structure initiative; 1.90A {Geobacillus
stearothermophilus} SCOP: c.37.1.6
Length = 201
Score = 30.4 bits (69), Expect = 1.4
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 435 GSSGSGKSTLAMLLLRLYDPQNGKILI 461
G S SGK+TLA L + Q + +
Sbjct: 29 GLSRSGKTTLANQLSQTLREQGISVCV 55
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.1 bits (67), Expect = 1.4
Identities = 9/45 (20%), Positives = 17/45 (37%), Gaps = 3/45 (6%)
Query: 546 QKQRIAIARALIKKSKILLLDEATSALDA-ENEYLVQSAIEKLIE 589
Q++R+ A K + ++A L+ Q +EK
Sbjct: 94 QRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQ--VEKNKI 136
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold,
transferase-transferase complex; HET: ADX ANP; 1.79A
{Arabidopsis thaliana} PDB: 4fxp_A*
Length = 200
Score = 30.3 bits (69), Expect = 1.5
Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 435 GSSGSGKSTLAMLL-LRLYDPQNGKILIDG 463
G SGSGKSTLA L LY ++DG
Sbjct: 32 GLSGSGKSTLACALNQMLYQKGKLCYILDG 61
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics,
NPPSFA, national P protein structural and functional
analyses; 2.10A {Aeropyrum pernix}
Length = 186
Score = 30.2 bits (69), Expect = 1.5
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 435 GSSGSGKSTLAMLL 448
G GSGK+T+A L
Sbjct: 20 GLPGSGKTTIATRL 33
>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon
metabolism, pyridoxal phosphate, structural genomics;
HET: LLP; 1.50A {Mycobacterium tuberculosis}
Length = 447
Score = 30.7 bits (70), Expect = 1.6
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 10/51 (19%)
Query: 488 FSGTIYENILYGVNDSSSVTKSDIIHA-AKE---------ANAYGFVIDFK 528
FSG +YEN YGV+ ++ + D + A A E +AY V+DF
Sbjct: 153 FSGKLYENGFYGVDPATHLIDMDAVRATALEFRPKVIIAGWSAYPRVLDFA 203
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation,
nucleotide metab transferase; HET: C5P; 1.50A {Thermus
thermophilus} PDB: 3akc_A* 3akd_A*
Length = 208
Score = 29.7 bits (68), Expect = 2.0
Identities = 8/22 (36%), Positives = 13/22 (59%), Gaps = 3/22 (13%)
Query: 430 MTSVI---GSSGSGKSTLAMLL 448
M ++ G S SGKS++A +
Sbjct: 1 MRGIVTIDGPSASGKSSVARRV 22
>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural
genomics; HET: PLP; 1.15A {Thermus thermophilus}
Length = 407
Score = 30.2 bits (69), Expect = 2.1
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 10/51 (19%)
Query: 488 FSGTIYENILYGVNDSSSVTKSDIIHA-AKE---------ANAYGFVIDFK 528
FSG +Y+ + YGV + + + + A E A+AY DFK
Sbjct: 131 FSGKLYKVVSYGVRPDTELIDLEEVRRLALEHRPKVIVAGASAYPRFWDFK 181
>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory,
pyridoxal phosphate, one-carbon metabolism,
PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus
stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A*
1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A*
2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A*
2vgv_A* 2vgw_A* ...
Length = 405
Score = 30.2 bits (69), Expect = 2.1
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 10/51 (19%)
Query: 488 FSGTIYENILYGVNDSSSVTKSDIIHA-AKE---------ANAYGFVIDFK 528
FSG Y + YGV+ + V D + A+ A AY +IDF
Sbjct: 131 FSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAAAAYPRIIDFA 181
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics
consortium, SGC, GDP, membrane, nucleotide-binding,
nucleotide binding protein; HET: GDP; 1.82A {Homo
sapiens}
Length = 195
Score = 29.5 bits (67), Expect = 2.3
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 11/46 (23%)
Query: 433 VIGSSGSGKSTLAMLLLR-----LYDPQNG------KILIDGVDIK 467
++G SG GKSTLA ++P+N +I++D ++
Sbjct: 28 LVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVT 73
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD,
transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP:
c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Length = 252
Score = 29.8 bits (67), Expect = 2.4
Identities = 11/41 (26%), Positives = 17/41 (41%)
Query: 433 VIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMY 473
V G + SGKS++ +++L V I D Y
Sbjct: 27 VSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY 67
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta
protein., structural genomics, PSI-2, protein structure
initiative; HET: G3D; 2.20A {Bacillus subtilis} PDB:
2axp_A*
Length = 173
Score = 29.3 bits (66), Expect = 2.4
Identities = 8/21 (38%), Positives = 10/21 (47%), Gaps = 2/21 (9%)
Query: 430 MTS--VIGSSGSGKSTLAMLL 448
MT + G KST+A L
Sbjct: 1 MTLIILEGPDCCFKSTVAAKL 21
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3
catalytic subunit; nucleotide-binding, capsid protein;
2.75A {Murray valley encephalitis virus}
Length = 673
Score = 30.3 bits (68), Expect = 2.5
Identities = 10/88 (11%), Positives = 33/88 (37%), Gaps = 8/88 (9%)
Query: 380 REPLISTSG---GKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGS 436
P+++++G G + + + G + + + V ++ +T +
Sbjct: 190 GSPIVNSNGEIIGLYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLH 249
Query: 437 SGSGKSTLAMLLLRLYD---PQNGKILI 461
G+GK+ +L ++ + + +
Sbjct: 250 PGAGKTRR--ILPQIIKDAIQKRLRTAV 275
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed
alpha-beta fold, elongated beta-sheet, walker A motif,
P-loop structural motif; 1.90A {Escherichia coli} SCOP:
c.37.1.10 PDB: 1p9n_A
Length = 174
Score = 29.4 bits (65), Expect = 2.5
Identities = 7/30 (23%), Positives = 14/30 (46%)
Query: 432 SVIGSSGSGKSTLAMLLLRLYDPQNGKILI 461
+ SG+GK+TL L+ + + +
Sbjct: 10 AFAAWSGTGKTTLLKKLIPALCARGIRPGL 39
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase
activation, cytochrome C, procaspase-9, A nucleotide,
cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A*
3iyt_A* 3iza_A*
Length = 1249
Score = 30.2 bits (68), Expect = 2.6
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 431 TSVIGSSGSGKSTLAMLLLR 450
++ G +G GKS LA +R
Sbjct: 150 VTIYGMAGCGKSVLAAEAVR 169
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 2.6
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 9/35 (25%)
Query: 62 KKSELKKLFTLAKSEKR-KL--TGAVCLLLVSSSI 93
+K LKKL + KL + L + +++
Sbjct: 18 EKQALKKL------QASLKLYADDSAPALAIKATM 46
>3mr0_A Sensory box histidine kinase/response regulator; PAS fold,
structural genomics, PSI-2; HET: PG5; 1.49A
{Burkholderia thailandensis}
Length = 142
Score = 29.0 bits (66), Expect = 2.7
Identities = 6/40 (15%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 580 VQSAIEKLIEGKTVLTIAHRLSTIRKSNQIC-VLDKGKIV 618
V +A++ +E + + +R+ +S + +G+ +
Sbjct: 68 VLAALKAHLEHRDTYDVEYRV--RTRSGDFRWIQSRGQAL 105
>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A,
one-carbon metabolism, pyridoxa phosphate, structural
genomics; 1.60A {Burkholderia pseudomallei}
Length = 425
Score = 29.5 bits (67), Expect = 3.3
Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 10/51 (19%)
Query: 488 FSGTIYENILYGVNDSSSVTKSDIIHA-AKE---------ANAYGFVIDFK 528
SG + + YGV+ + + D + A A++ +AY +DF
Sbjct: 140 LSGKWFNALQYGVSRDTMLIDYDQVEALAQQHKPSLIIAGFSAYPRKLDFA 190
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.76A {Mus musculus}
Length = 169
Score = 28.6 bits (65), Expect = 3.5
Identities = 12/46 (26%), Positives = 22/46 (47%), Gaps = 11/46 (23%)
Query: 433 VIGSSGSGKSTLAMLLLR-----LYDPQNG------KILIDGVDIK 467
++G SG GKSTLA ++ +N +I++D ++
Sbjct: 7 LVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVT 52
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein
phosphatase, dual activity, product, substrate,
transferase, hydrolase; 1.95A {Staphylococcus xylosus}
SCOP: c.98.2.1 c.91.1.2
Length = 314
Score = 29.2 bits (65), Expect = 3.6
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 7/44 (15%)
Query: 433 VIGSSGSGKSTLAMLLLRLYDPQNGKILI--DGVDIKELDPMYL 474
+ G SG GKS A+ L+ + G L+ D V+I+E+ L
Sbjct: 149 ITGDSGIGKSETALELI-----KRGHRLVADDNVEIREISKDEL 187
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 354
Score = 29.5 bits (66), Expect = 3.7
Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 435 GSSGSGKSTLAMLLLR-LYDPQNGKILIDGVDIKELDPMYLRSQIGS 480
G +G+GK T M LL ++ P ++ ID L + S
Sbjct: 43 GPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVS 89
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex,
transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Length = 460
Score = 29.4 bits (65), Expect = 3.8
Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 4/54 (7%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDP 471
L + + G ++G S +GK++L+ L N LDP
Sbjct: 128 LEKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAY----QPLYINLDP 177
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane,
nucleotide-binding, RNA replication, transmembrane,
viral protein; 1.80A {Japanese encephalitis virus} PDB:
2v8o_A 2qeq_A
Length = 459
Score = 29.4 bits (66), Expect = 4.4
Identities = 7/38 (18%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 425 IQSGSMTSVIGSSGSGKST-LAMLLLRLYDPQNGKILI 461
++ MT + GSGK+ + +++ Q + +
Sbjct: 18 LRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQRLRTAV 55
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial
conjugation, F1-ATPase-like quaternary structure, ring
helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB:
1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Length = 437
Score = 29.1 bits (65), Expect = 4.5
Identities = 13/68 (19%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
Query: 412 RPDAVILNDLSLKIQSGSM-TSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIK-EL 469
+ V + + + + V G++G+GKS L L + +++I VD ++
Sbjct: 36 KAKQVTVAGVPMPRDAEPRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVI--VDPNGDM 93
Query: 470 DPMYLRSQ 477
+ R +
Sbjct: 94 LSKFGRDK 101
>1xjc_A MOBB protein homolog; structural genomics, midwest center for
structural GEN PSI, protein structure initiative, MCSG;
2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Length = 169
Score = 28.5 bits (63), Expect = 4.7
Identities = 8/41 (19%), Positives = 15/41 (36%)
Query: 432 SVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPM 472
V+G SGK+TL + + ++ +P
Sbjct: 8 QVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHGGEPA 48
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB);
structural genomics, PSI, protein structure initiative;
2.10A {Archaeoglobus fulgidus}
Length = 171
Score = 28.5 bits (63), Expect = 4.8
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 432 SVIGSSGSGKSTLAMLLLRLYDPQN 456
S++G+S SGK+TL ++ + +
Sbjct: 6 SIVGTSDSGKTTLITRMMPILRERG 30
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase,
transferase; NMR {Streptococcus pneumoniae} SCOP:
c.37.1.1
Length = 236
Score = 28.6 bits (65), Expect = 4.9
Identities = 8/29 (27%), Positives = 14/29 (48%), Gaps = 4/29 (13%)
Query: 424 KIQSGSMTSVI----GSSGSGKSTLAMLL 448
M ++ G + SGKST+A ++
Sbjct: 8 HDDDDKMKTIQIAIDGPASSGKSTVAKII 36
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain,
phosphoprotein, repressor, transcri transcription
regulation; 2.10A {Homo sapiens}
Length = 129
Score = 28.0 bits (63), Expect = 5.0
Identities = 12/77 (15%), Positives = 26/77 (33%), Gaps = 17/77 (22%)
Query: 67 KKLFTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTS----DKKEMKEKMTS 122
+ LF ++S +L AV P + +++ YT + + M +
Sbjct: 60 RDLFNNSRSAVVELPAAVQ------------PQSFQQILSFCYTGRLSMNVGDQDLLMYT 107
Query: 123 LSLLLMLVFVVGACCNF 139
L + ++ F
Sbjct: 108 AGFLQIQ-EIMEKGTEF 123
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for
structural genomics of infec diseases, csgid, putative
guanylate kinase; HET: MSE; 2.05A {Listeria
monocytogenes}
Length = 208
Score = 28.6 bits (65), Expect = 5.1
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 428 GSMTSVIGSSGSGKSTLAMLLLRLYDPQ 455
G + + G SG GK T+ + + +
Sbjct: 8 GLLIVLSGPSGVGKGTVREAVFKDPETS 35
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Length = 181
Score = 28.5 bits (63), Expect = 5.1
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 433 VIGSSGSGKSTLAMLLLR 450
+ G + GKS L++ L+
Sbjct: 21 ITGEANIGKSELSLALID 38
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2,
ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding,
GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB:
3d6t_B*
Length = 184
Score = 28.5 bits (64), Expect = 5.2
Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 7/40 (17%)
Query: 433 VIGSSGSGKSTLAMLLLRL----YDPQNGKILIDGVDIKE 468
++G++GSGK+T LL +L + G+D+K+
Sbjct: 7 IVGNTGSGKTT---LLQQLMKTKKSDLGMQSATVGIDVKD 43
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication,
viral replication, nucleotide-binding; 2.10A {Kokobera
virus} PDB: 2v6j_A
Length = 431
Score = 29.0 bits (65), Expect = 5.5
Identities = 7/37 (18%), Positives = 16/37 (43%), Gaps = 5/37 (13%)
Query: 428 GSMTSVIGSSGSGKSTLAMLLLRLYD---PQNGKILI 461
+T + G+GK+ +L +L + + +I
Sbjct: 2 RELTVLDLHPGAGKTRR--VLPQLVREAVKKRLRTVI 36
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP:
a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Length = 549
Score = 29.2 bits (65), Expect = 5.5
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 421 LSLKIQSGSMTSVIGSSGSGKSTLAMLLLR 450
+ + G +GSGKS +A L
Sbjct: 145 DEMCDLDSFFLFLHGRAGSGKSVIASQALS 174
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding,
nucleoside kinase, nucleotide-binding; 2.50A {Homo
sapiens} PDB: 2uvq_A*
Length = 245
Score = 28.6 bits (64), Expect = 6.0
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 433 VIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMY 473
V G + SGKST+ ++ L + V I D Y
Sbjct: 30 VSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRFY 70
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1,
nicotinic acid riboside kinase activity, NAD
biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB:
2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Length = 207
Score = 27.9 bits (62), Expect = 8.6
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 435 GSSGSGKSTLAMLLLR 450
G + SGK+TLA L +
Sbjct: 28 GVTNSGKTTLAKNLQK 43
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide
monophosphate kinase,, transferase; 1.75A {Escherichia
coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A*
1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Length = 227
Score = 27.8 bits (63), Expect = 9.4
Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 6/25 (24%)
Query: 430 MTS---VI---GSSGSGKSTLAMLL 448
MT+ VI G SG+GK TL +
Sbjct: 1 MTAIAPVITIDGPSGAGKGTLCKAM 25
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.371
Gapped
Lambda K H
0.267 0.0529 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,392,445
Number of extensions: 581902
Number of successful extensions: 1899
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1781
Number of HSP's successfully gapped: 222
Length of query: 644
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 544
Effective length of database: 3,909,693
Effective search space: 2126872992
Effective search space used: 2126872992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.4 bits)