RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5743
(644 letters)
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export
ATP-binding/permease protein SAV1866 {Staphylococcus
aureus [TaxId: 1280]}
Length = 255
Score = 286 bits (734), Expect = 2e-93
Identities = 111/247 (44%), Positives = 159/247 (64%), Gaps = 5/247 (2%)
Query: 397 KGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQN 456
+G ID +++ F Y +A IL D++L I+ G + +G SG GKSTL L+ R YD +
Sbjct: 14 QGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTS 72
Query: 457 GKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAK 516
G+ILIDG +IK+ LR+QIG V Q+ LFS T+ ENIL G T +++ AAK
Sbjct: 73 GQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPT---ATDEEVVEAAK 129
Query: 517 EANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAEN 576
ANA+ F+++ G+DT VGERG+ LSGGQKQR++IAR + IL+LDEATSALD E+
Sbjct: 130 MANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLES 189
Query: 577 EYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNK 636
E ++Q A++ L + +T L +AHRLSTI +++I V++ G IVE G++ LI +
Sbjct: 190 ESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAK-QGAYEH 248
Query: 637 LMKYQTM 643
L Q +
Sbjct: 249 LYSIQNL 255
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter
MsbA, C-terminal domain {Salmonella typhimurium [TaxId:
90371]}
Length = 253
Score = 276 bits (707), Expect = 2e-89
Identities = 112/254 (44%), Positives = 168/254 (66%), Gaps = 4/254 (1%)
Query: 389 GKFFSHSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLL 448
GK G+++F N+ F+YP R + L +++LKI +G +++G SGSGKST+A L+
Sbjct: 3 GKRVIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLI 61
Query: 449 LRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTK 508
R YD G IL+DG D++E LR+Q+ VSQ LF+ T+ NI Y + ++
Sbjct: 62 TRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEE--YSR 119
Query: 509 SDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEA 568
I AA+ A A F+ NG DTI+GE G++LSGGQ+QRIAIARAL++ S IL+LDEA
Sbjct: 120 EQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEA 179
Query: 569 TSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIK 628
TSALD E+E +Q+A+++L + +T L IAHRLSTI ++++I V++ G IVE G+++ L+
Sbjct: 180 TSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLA 239
Query: 629 NPNSMFNKLMKYQT 642
+ ++ +L K Q
Sbjct: 240 Q-HGVYAQLHKMQF 252
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 269 bits (688), Expect = 1e-86
Identities = 92/246 (37%), Positives = 154/246 (62%), Gaps = 5/246 (2%)
Query: 396 LKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQ 455
L+G + F ++ F+YP+RPD ++L L+ ++ G +T+++G +GSGKST+A LL LY P
Sbjct: 8 LEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT 67
Query: 456 NGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAA 515
G++L+DG + + + YL Q+ +V QEP +F ++ ENI YG+ T +I AA
Sbjct: 68 GGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQ--KPTMEEITAAA 125
Query: 516 KEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAE 575
++ A+ F+ G+DT V E G LSGGQ+Q +A+ARALI+K +L+LD+ATSALDA
Sbjct: 126 VKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDAN 185
Query: 576 NEYLVQSAIEKLIE--GKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSM 633
++ V+ + + E ++VL I LS + +++ I L+ G I E G++ L++
Sbjct: 186 SQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEK-KGC 244
Query: 634 FNKLMK 639
+ +++
Sbjct: 245 YWAMVQ 250
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein
{Escherichia coli [TaxId: 562]}
Length = 241
Score = 264 bits (675), Expect = 8e-85
Identities = 111/244 (45%), Positives = 168/244 (68%), Gaps = 4/244 (1%)
Query: 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGK 458
+I F NIRF Y VIL++++L I+ G + ++G SGSGKSTL L+ R Y P+NG+
Sbjct: 1 DITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 59
Query: 459 ILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEA 518
+LIDG D+ DP +LR Q+G V Q+ L + +I +NI ++ +I+AAK A
Sbjct: 60 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPG---MSVEKVIYAAKLA 116
Query: 519 NAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEY 578
A+ F+ + + G++TIVGE+G LSGGQ+QRIAIARAL+ KIL+ DEATSALD E+E+
Sbjct: 117 GAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEH 176
Query: 579 LVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLM 638
++ + K+ +G+TV+ IAHRLST++ +++I V++KGKIVE G + L+ P S+++ L
Sbjct: 177 VIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLY 236
Query: 639 KYQT 642
+ Q+
Sbjct: 237 QLQS 240
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA,
C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Length = 242
Score = 252 bits (644), Expect = 3e-80
Identities = 99/242 (40%), Positives = 148/242 (61%), Gaps = 5/242 (2%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
+ ++ F+Y IL D+S + Q S+ + G SG GKST+ LL R Y P G+I
Sbjct: 2 LSARHVDFAYDDSEQ--ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59
Query: 460 LIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEAN 519
IDG I + RSQIG VSQ+ + +GTI EN+ YG+ T D+ A
Sbjct: 60 TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGD--YTDEDLWQVLDLAF 117
Query: 520 AYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYL 579
A FV + + +T VGERG+ +SGGQ+QR+AIARA ++ KIL+LDEAT++LD+E+E +
Sbjct: 118 ARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESM 177
Query: 580 VQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLMK 639
VQ A++ L++G+T L IAHRLSTI +++I ++KG+I G + L+ + ++ K +
Sbjct: 178 VQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT-HPLYAKYVS 236
Query: 640 YQ 641
Q
Sbjct: 237 EQ 238
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance
regulator, CFTR, nucleotide-binding domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 281
Score = 236 bits (603), Expect = 1e-73
Identities = 81/295 (27%), Positives = 139/295 (47%), Gaps = 35/295 (11%)
Query: 351 GISIGGLSNFYSELNKGLGACHRLWEIMEREPLISTSGGKFFSHSLKGEIDFNNIRFSYP 410
GI + ++ F+ E E++E+ + K D NN+ FS+
Sbjct: 2 GIIMENVTAFWEE---------GFGELLEKVQQSNGDR--------KHSSDENNVSFSHL 44
Query: 411 SRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELD 470
+L +++L I+ G M ++ GS+GSGK++L ML+L + G I G
Sbjct: 45 CLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG------- 97
Query: 471 PMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNG 530
++ SQ + GTI ENI++GV+ + K + F
Sbjct: 98 ------RVSFCSQFSWIMPGTIKENIIFGVS----YDEYRYKSVVKACQLQQDITKFAEQ 147
Query: 531 FDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAEN-EYLVQSAIEKLIE 589
+T++GE G+ LSGGQ+ RI++ARA+ K + + LLD LD E + +S + KL+
Sbjct: 148 DNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMA 207
Query: 590 GKTVLTIAHRLSTIRKSNQICVLDKGKIVEIGSYAHLIKNPNSMFNKLMKYQTMD 644
KT + + ++ +RK+++I +L +G G+++ L +KLM Y T D
Sbjct: 208 NKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSSKLMGYDTFD 262
>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 230
Score = 174 bits (442), Expect = 5e-51
Identities = 67/232 (28%), Positives = 109/232 (46%), Gaps = 16/232 (6%)
Query: 400 IDFNNIRFSYPSRPDAV-ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGK 458
I N+ +Y + + L +++L I+ G S++G SGSGKST+ ++ L P G+
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 459 ILIDGVDIKELDPMYL----RSQIGSVSQEPTLFSG-TIYENILYG--VNDSSSVTKSDI 511
+ ID + +LD L R +IG V Q+ L T EN+ +++ +
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 512 IHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSA 571
A E + + LSGGQ+QR+AIARAL I+L D+ T A
Sbjct: 122 RKRALECL------KMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGA 175
Query: 572 LDAENEYLVQSAIEKLIE--GKTVLTIAHRLSTIRKSNQICVLDKGKIVEIG 621
LD++ + ++KL E GKTV+ + H ++ R +I L G++
Sbjct: 176 LDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREE 227
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal
domain {Pyrococcus horikoshii [TaxId: 53953]}
Length = 239
Score = 161 bits (408), Expect = 5e-46
Identities = 65/240 (27%), Positives = 117/240 (48%), Gaps = 17/240 (7%)
Query: 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGK 458
E+ N+ + + +N L+L I+ G ++G SG GK+T ++ L +P G+
Sbjct: 6 EVKLENLTKRFGNF---TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGR 62
Query: 459 ILIDGVDIKELDPMYLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKE 517
I D+ L P I V Q ++ T+YENI + + K +I +
Sbjct: 63 IYFGDRDVTYLPPKD--RNISMVFQSYAVWPHMTVYENIAFPL-KIKKFPKDEIDKRVRW 119
Query: 518 ANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENE 577
A + ++ LSGGQ+QR+A+ARA++ + +LL+DE S LDA+
Sbjct: 120 AAE-------LLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLR 172
Query: 578 YLVQSAIEKLIE--GKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLIKNPNSMF 634
+++ I+KL + T + + H ++I V+++G++++IGS + PNS+F
Sbjct: 173 VAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVF 232
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine
permease {Salmonella typhimurium [TaxId: 90371]}
Length = 258
Score = 157 bits (399), Expect = 2e-44
Identities = 73/253 (28%), Positives = 119/253 (47%), Gaps = 27/253 (10%)
Query: 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGK 458
++ ++ Y +L +SL+ ++G + S+IGSSGSGKST + L P G
Sbjct: 2 KLHVIDLHKRYGGHE---VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGA 58
Query: 459 ILIDGVDIKELDP-------------MYLRSQIGSVSQEPTLFSG-TIYENILYGVNDSS 504
I+++G +I + LR+++ V Q L+S T+ EN++
Sbjct: 59 IIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL 118
Query: 505 SVTKSDIIHAAKEA-NAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKIL 563
++K D A + G + + LSGGQ+QR++IARAL + +L
Sbjct: 119 GLSKHDARERALKYLAKVGIDERAQGKYPV-------HLSGGQQQRVSIARALAMEPDVL 171
Query: 564 LLDEATSALDAEN-EYLVQSAIEKLIEGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIG 621
L DE TSALD E +++ + EGKT++ + H + R S+ + L +GKI E G
Sbjct: 172 LFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEG 231
Query: 622 SYAHLIKNPNSMF 634
+ NP S
Sbjct: 232 DPEQVFGNPQSPR 244
>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein
MetN {Escherichia coli [TaxId: 562]}
Length = 240
Score = 156 bits (397), Expect = 2e-44
Identities = 71/243 (29%), Positives = 117/243 (48%), Gaps = 16/243 (6%)
Query: 400 IDFNNIRFSYPSRPDAV-ILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGK 458
I +NI + + LN++SL + +G + VIG+SG+GKSTL + L P G
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61
Query: 459 ILIDGVDIKELDPMY---LRSQIGSVSQEPTLF-SGTIYENILYGVNDSSSVTKSDIIHA 514
+L+DG ++ L R QIG + Q L S T++ N+ + + K ++
Sbjct: 62 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLE-LDNTPKDEVKRR 120
Query: 515 AKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDA 574
E + G LSGGQKQR+AIARAL K+LL DEATSALD
Sbjct: 121 VTELLS-------LVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDP 173
Query: 575 ENEYLVQSAIEKLIE--GKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLIKNPN 631
+ ++ + G T+L I H + +++ + + V+ G+++E + + + +P
Sbjct: 174 ATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPK 233
Query: 632 SMF 634
+
Sbjct: 234 TPL 236
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12
uptake, BtuD {Escherichia coli [TaxId: 562]}
Length = 231
Score = 152 bits (385), Expect = 6e-43
Identities = 50/228 (21%), Positives = 106/228 (46%), Gaps = 24/228 (10%)
Query: 414 DAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMY 473
++ L LS ++++G + ++G +G+GKSTL + + G I G ++
Sbjct: 11 ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATK 69
Query: 474 LRSQIGSVSQEPTL-FSGTIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFD 532
L +SQ+ T F+ ++ + +D T++++++ A D
Sbjct: 70 LALHRAYLSQQQTPPFATPVWHYLTLHQHDK---TRTELLNDVAGA----------LALD 116
Query: 533 TIVGERGIMLSGGQKQRIAIARALIK-------KSKILLLDEATSALDAENEYLVQSAIE 585
+G LSGG+ QR+ +A +++ ++LLLDE ++LD + + +
Sbjct: 117 DKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILS 176
Query: 586 KLI-EGKTVLTIAHRLS-TIRKSNQICVLDKGKIVEIGSYAHLIKNPN 631
L +G ++ +H L+ T+R +++ +L GK++ G ++ PN
Sbjct: 177 ALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPPN 224
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 232
Score = 138 bits (350), Expect = 4e-38
Identities = 57/238 (23%), Positives = 99/238 (41%), Gaps = 15/238 (6%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
+ N+ ++ + V+ D++L I G +G SG GKSTL ++ L +G +
Sbjct: 1 VQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL 57
Query: 460 LIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAAKEAN 519
I + + P +G V Q L+ + + K I +
Sbjct: 58 FIGEKRMNDTPPA--ERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVA 115
Query: 520 AYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYL 579
+ + + LSGGQ+QR+AI R L+ + + LLDE S LDA
Sbjct: 116 EVLQLAHLLD-------RKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQ 168
Query: 580 VQSAIEKL--IEGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLIKNPNSMF 634
++ I +L G+T++ + H +++I VLD G++ ++G L P F
Sbjct: 169 MRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRF 226
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 254
Score = 139 bits (351), Expect = 6e-38
Identities = 60/240 (25%), Positives = 104/240 (43%), Gaps = 12/240 (5%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
+ NI + L+ +S+ + G +T +IG +GSGKSTL ++ G++
Sbjct: 5 LRTENIVKYFGEF---KALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRV 61
Query: 460 LIDGVDIKELDPMYL-RSQIGSVSQEPTLFSG-TIYENILYG-----VNDSSSVTKSDII 512
+ DI +P L I Q P T+ EN+L G + +S+ I
Sbjct: 62 YFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWI 121
Query: 513 HAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSAL 572
+E F I + + LSGGQ + + I RAL+ K++++DE + +
Sbjct: 122 PKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGV 181
Query: 573 DAENEYLVQSAIEKLI-EGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLIKNP 630
+ + + + +L +G T L I HRL + + + V+ G+I+ G IKN
Sbjct: 182 APGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKNV 241
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK,
N-terminal domain {Archaeon Thermococcus litoralis
[TaxId: 2265]}
Length = 240
Score = 138 bits (348), Expect = 1e-37
Identities = 52/242 (21%), Positives = 109/242 (45%), Gaps = 17/242 (7%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
+ ++ + + + ++SL+++ G ++G SG GK+T ++ L +P G+I
Sbjct: 4 VRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI 60
Query: 460 LIDGVDIKELDPMYLR----SQIGSVSQEPTLFSGTIYENILYGVNDSSSVTKSDIIHAA 515
I + + + I V Q L+ + + V + +I
Sbjct: 61 YIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRV 120
Query: 516 KEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAE 575
+E ++ + E LSGGQ+QR+A+ RA+++K ++ L+DE S LDA+
Sbjct: 121 REVAE---LLGLTELLNRKPRE----LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAK 173
Query: 576 NEYLVQSAIEKL--IEGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLIKNPNS 632
+++ ++KL G T + + H ++I V+++G + ++GS + P +
Sbjct: 174 LRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKPAN 233
Query: 633 MF 634
F
Sbjct: 234 TF 235
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter
{Thermotoga maritima, TM1139 [TaxId: 2336]}
Length = 240
Score = 133 bits (337), Expect = 3e-36
Identities = 60/236 (25%), Positives = 112/236 (47%), Gaps = 17/236 (7%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
++ ++ Y + + + LK+ G + ++IG++G+GK+T + L Q GKI
Sbjct: 7 LEVQSLHVYYGAIH---AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKI 63
Query: 460 LIDGVDIKELDPMYLRSQIGSV--SQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAK 516
+ +G DI P ++ +++G + +F T+YEN++ G + K I +
Sbjct: 64 IFNGQDITN-KPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKD--KEGIKRDLE 120
Query: 517 EANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAEN 576
+ + + G LSGG++Q +AI RAL+ + K+L++DE + L
Sbjct: 121 W------IFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPIL 174
Query: 577 EYLVQSAIEKLI-EGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLIKNP 630
V I+K+ EG T+L + K ++ VL+ G+IV G + L+ N
Sbjct: 175 VSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDNE 230
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga
maritima [TaxId: 2336]}
Length = 238
Score = 132 bits (333), Expect = 9e-36
Identities = 58/250 (23%), Positives = 116/250 (46%), Gaps = 20/250 (8%)
Query: 398 GEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNG 457
G + ++R + IL +S +I+ G + +IG +G+GK+T ++ L P +G
Sbjct: 1 GAVVVKDLRKRIGKKE---ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSG 57
Query: 458 KILIDGVDIKELDPMYLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAK 516
+ + G ++ E +P +R I + +E + E + + + + S+I +
Sbjct: 58 IVTVFGKNVVE-EPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAG-FYASSSSEIEEMVE 115
Query: 517 EANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAEN 576
A G + +R S G +++ IARAL+ ++ +LDE TS LD N
Sbjct: 116 RATE-------IAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLN 168
Query: 577 EYLVQSAIEKLI-EGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLIKNPNS-- 632
V+ +++ EG T+L +H + + ++I ++ G IVE G+ L + +
Sbjct: 169 AREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQN 228
Query: 633 ---MFNKLMK 639
+F +++K
Sbjct: 229 IEEVFEEVVK 238
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 200
Score = 128 bits (323), Expect = 1e-34
Identities = 38/206 (18%), Positives = 94/206 (45%), Gaps = 25/206 (12%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
++ ++ Y D +L +++ I+ G++ + G +G GK+TL + P G+I
Sbjct: 3 LEIRDLSVGY----DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 58
Query: 460 LIDGVDIKELDPMYLRSQIGSVSQEPTLFSG-TIYENILYGVN-DSSSVTKSDIIHAAKE 517
+ +GV ++ +I + +E + ++ + + + V K++I+ A +
Sbjct: 59 IYNGV-----PITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALES 113
Query: 518 ANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENE 577
++ LS G +R+ +A L+ ++I +LD+ A+D +++
Sbjct: 114 VEVLDL------------KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSK 161
Query: 578 YLVQSAIEKLIE--GKTVLTIAHRLS 601
+ V +I ++++ G +++ LS
Sbjct: 162 HKVLKSILEILKEKGIVIISSREELS 187
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter,
ATP-binding protein {Methanosarcina acetivorans [TaxId:
2214]}
Length = 229
Score = 127 bits (321), Expect = 4e-34
Identities = 65/239 (27%), Positives = 118/239 (49%), Gaps = 21/239 (8%)
Query: 400 IDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKI 459
I+ ++ + + L++LSLK++SG ++G +G+GK+ L+ + P +G+I
Sbjct: 2 IEIESLSRKWKN----FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI 57
Query: 460 LIDGVDIKELDPMYLRSQIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEA 518
L+DG D+ +L P + I V Q +LF + +N+ +G+ ++ A++
Sbjct: 58 LLDGKDVTDLSPE--KHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDL 115
Query: 519 NAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEY 578
+ + LSGG++QR+A+ARAL+ KILLLDE SALD +
Sbjct: 116 KIEHL-----------LDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQE 164
Query: 579 LVQSAIEKL--IEGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLIKNPNSMF 634
+ + L TVL I H + R +++I V+ GK++++G + + P
Sbjct: 165 NAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGR 223
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV,
N-terminal domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 242
Score = 126 bits (317), Expect = 2e-33
Identities = 67/243 (27%), Positives = 122/243 (50%), Gaps = 16/243 (6%)
Query: 399 EIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGK 458
I N+ + + V L+++++ I++G ++G SG+GK+T ++ L P G+
Sbjct: 3 RIIVKNVSKVFK-KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61
Query: 459 ILIDGVDIKELDPMYLRS---QIGSVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHA 514
+ D + + + +IG V Q L+ T +ENI + + + ++K +I
Sbjct: 62 LYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPL-TNMKMSKEEIRKR 120
Query: 515 AKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAIARALIKKSKILLLDEATSALDA 574
+E + N F LSG Q+QR+A+ARAL+K +LLLDE S LDA
Sbjct: 121 VEEVAKILDIHHVLNHFPR-------ELSGAQQQRVALARALVKDPSLLLLDEPFSNLDA 173
Query: 575 ENEYLVQSAIEKL--IEGKTVLTIAHRLSTIRK-SNQICVLDKGKIVEIGSYAHLIKNPN 631
++ ++++ G T+L ++H + I ++++ VL KGK+V++G L NP
Sbjct: 174 RMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPV 233
Query: 632 SMF 634
S+
Sbjct: 234 SIQ 236
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding
protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId:
2234]}
Length = 240
Score = 119 bits (299), Expect = 4e-31
Identities = 57/217 (26%), Positives = 105/217 (48%), Gaps = 17/217 (7%)
Query: 420 DLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIG 479
++ ++ ++G +G+GKS L+ + P G++ ++G DI L P R IG
Sbjct: 17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPP--ERRGIG 73
Query: 480 SVSQEPTLFSG-TIYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGER 538
V Q+ LF ++Y NI YG+ + V + + +E + + +
Sbjct: 74 FVPQDYALFPHLSVYRNIAYGLRN---VERVERDRRVREMAEKLGIAHLLD-------RK 123
Query: 539 GIMLSGGQKQRIAIARALIKKSKILLLDEATSALDAENEYLVQSAIEKL--IEGKTVLTI 596
LSGG++QR+A+ARAL+ + ++LLLDE SA+D + + ++ + + +L +
Sbjct: 124 PARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHV 183
Query: 597 AHRLSTIRK-SNQICVLDKGKIVEIGSYAHLIKNPNS 632
H L ++++ V+ G+IVE G L N
Sbjct: 184 THDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNG 220
>d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export
ATP-binding/permease protein SAV1866 {Staphylococcus
aureus [TaxId: 1280]}
Length = 323
Score = 112 bits (279), Expect = 9e-28
Identities = 66/321 (20%), Positives = 136/321 (42%), Gaps = 4/321 (1%)
Query: 66 LKKLFTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSL-- 123
+K+ K K ++ + + ++ I M +P + ID + + EK+ L
Sbjct: 2 IKRYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTI 61
Query: 124 --SLLLMLVFVVGACCNFGRVYLMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELI 181
+ L + +V F R YL ++ I +R++L+ + + ++ ++ G++I
Sbjct: 62 AIGIALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVI 121
Query: 182 NRISADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLALISLIIVPPVAGLAIVY 241
+R+ D + + + + + +S+MF + KL L +L I P V+
Sbjct: 122 SRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVF 181
Query: 242 GKFVRKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEA 301
+RK+TR LA ER+ I VKSF+ E E +F+ K + A K
Sbjct: 182 FGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHT 241
Query: 302 LAKGVFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFY 361
F + + V+ G + +ITVG L++F+ Y + + L +
Sbjct: 242 RWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASF 301
Query: 362 SELNKGLGACHRLWEIMEREP 382
+ L + + R++++++ +
Sbjct: 302 TTLTQSFASMDRVFQLIDEDY 322
>d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter
MsbA, N-terminal domain {Salmonella typhimurium [TaxId:
90371]}
Length = 319
Score = 105 bits (262), Expect = 1e-25
Identities = 62/317 (19%), Positives = 142/317 (44%), Gaps = 3/317 (0%)
Query: 66 LKKLFTLAKSEKRKLTGAVCLLLVSSSITMAVPFALGKVIDVIYTSDKKEMKEKMTSLSL 125
++L+ K L A L+++++ + L ++D + + + + + L
Sbjct: 4 FRRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSV---LLWMPL 60
Query: 126 LLMLVFVVGACCNFGRVYLMNVSAQSITKKLRERLFGSIISQETAYFDKHKTGELINRIS 185
+++ + ++ ++ Y ++ + + +R RLFG ++ A+FDK TG L++RI+
Sbjct: 61 VVIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRIT 120
Query: 186 ADTSLVSQCVTQNISDGLRSTVMVSAGVSMMFIISSKLALISLIIVPPVAGLAIVYGKFV 245
D+ V+ + + +R + MMF S +L++I +++ P V+ V K
Sbjct: 121 YDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRF 180
Query: 246 RKITRNVQDKLANAVQVAEERISNIRTVKSFSQEKLEMSHFNAKMDDLFELAKKEALAKG 305
R I++N+Q+ + AE+ + + V F +++E F+ + + K A
Sbjct: 181 RSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASS 240
Query: 306 VFFGFTGLSGNAIILSVLYYGGVMVSYETITVGNLSSFLLYAAYIGISIGGLSNFYSELN 365
+ L + + VLY +++T G ++ + + L+N ++
Sbjct: 241 ISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQ 300
Query: 366 KGLGACHRLWEIMEREP 382
+G+ AC L+ I++ E
Sbjct: 301 RGMAACQTLFAILDSEQ 317
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 91.2 bits (225), Expect = 7e-22
Identities = 22/189 (11%), Positives = 44/189 (23%), Gaps = 32/189 (16%)
Query: 433 VIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTI 492
+ G G GK+TL ++ + + V E I + ++ S
Sbjct: 5 ITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFF 64
Query: 493 YENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAI 552
L G V + A
Sbjct: 65 TSKKLVG--------------------------------SYGVNVQYFEELAIPILERAY 92
Query: 553 ARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVL 612
A + K++++DE ++ V+ +I L
Sbjct: 93 REAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRL 152
Query: 613 DKGKIVEIG 621
++E+
Sbjct: 153 PGAVLIELT 161
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 58.5 bits (140), Expect = 1e-10
Identities = 22/173 (12%), Positives = 45/173 (26%), Gaps = 11/173 (6%)
Query: 433 VIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTI 492
+ G G GK+TL + + + + + ++S S
Sbjct: 6 LTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSRVG 65
Query: 493 YENILYGVNDSSSVTKSDIIHAAKEANAYGFVID--FKNGFDTIVGERGIMLSGGQKQRI 550
E D+ + A D G V + + + I
Sbjct: 66 LEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFI 125
Query: 551 AIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTV----LTIAHR 599
R + ++L + +E++ K V +T +R
Sbjct: 126 QAVRQTLSTPGTIILGTIPVPKGK-----PLALVEEIRNRKDVKVFNVTKENR 173
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 292
Score = 58.6 bits (140), Expect = 6e-10
Identities = 17/82 (20%), Positives = 38/82 (46%), Gaps = 7/82 (8%)
Query: 541 MLSGGQKQRI------AIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLI-EGKTV 593
LSGG++ + A++ L + +L+LDE T LD E + + +E+ + + V
Sbjct: 201 FLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQV 260
Query: 594 LTIAHRLSTIRKSNQICVLDKG 615
+ ++H ++ + +
Sbjct: 261 ILVSHDEELKDAADHVIRISLE 282
Score = 37.0 bits (84), Expect = 0.005
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLA-MLLLRLYDPQNGKI 459
+D ++ + G + +IG +GSGKS+L +L+ LY P K
Sbjct: 14 HSDTVVEFKEG-INLIIGQNGSGKSSLLDAILVGLYWPLRIKD 55
>g1ii8.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 369
Score = 58.7 bits (140), Expect = 8e-10
Identities = 17/81 (20%), Positives = 38/81 (46%), Gaps = 7/81 (8%)
Query: 541 MLSGGQKQRI------AIARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE-GKTV 593
LSGG++ + A++ L + +L+LDE T LD E + + +E+ ++ V
Sbjct: 278 FLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQV 337
Query: 594 LTIAHRLSTIRKSNQICVLDK 614
+ ++H ++ + +
Sbjct: 338 ILVSHDEELKDAADHVIRISL 358
Score = 28.3 bits (61), Expect = 2.9
Identities = 10/25 (40%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Query: 420 DLSLKIQSGSMTSVIGSSGSGKSTL 444
D ++ + G + +IG +GSGKS+L
Sbjct: 16 DTVVEFKEG-INLIIGQNGSGKSSL 39
>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 427
Score = 38.9 bits (89), Expect = 0.001
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Query: 541 MLSGGQKQRIAI----ARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKT-VLT 595
LSGG+K A+ A + S +LDE +ALD N + + I + +
Sbjct: 332 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIV 391
Query: 596 IAHRLSTIRKSNQI 609
I+ + + KS+ +
Sbjct: 392 ISLKNTMFEKSDAL 405
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 35.0 bits (79), Expect = 0.014
Identities = 8/43 (18%), Positives = 17/43 (39%)
Query: 431 TSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMY 473
+ SG+GK+TL L+ + + + ++D
Sbjct: 5 LAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDMDVDK 47
>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain
{Staphylococcus xylosus [TaxId: 1288]}
Length = 169
Score = 34.5 bits (79), Expect = 0.018
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 7/43 (16%)
Query: 434 IGSSGSGKSTLAMLLLRLYDPQNGKILI--DGVDIKELDPMYL 474
G SG GKS A+ L+ + G L+ D V+I+E+ L
Sbjct: 21 TGDSGIGKSETALELI-----KRGHRLVADDNVEIREISKDEL 58
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 176
Score = 33.4 bits (75), Expect = 0.047
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 427 SGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKE 468
G++ + G GSGKST+A L L K+ D+
Sbjct: 3 GGNILLLSGHPGSGKSTIAEALANLPGVP--KVHFHSDDLWG 42
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase
{Streptomyces venezuelae [TaxId: 54571]}
Length = 178
Score = 33.1 bits (74), Expect = 0.051
Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 4/28 (14%)
Query: 430 MTS----VIGSSGSGKSTLAMLLLRLYD 453
MT+ + G S +GKS + L +
Sbjct: 1 MTTRMIILNGGSSAGKSGIVRCLQSVLP 28
>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 213
Score = 33.4 bits (75), Expect = 0.057
Identities = 10/39 (25%), Positives = 16/39 (41%)
Query: 435 GSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMY 473
G + SGKS++ +++L V I D Y
Sbjct: 9 GGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY 47
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 198
Score = 32.8 bits (73), Expect = 0.082
Identities = 11/41 (26%), Positives = 18/41 (43%)
Query: 435 GSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLR 475
G S SGK+TLA L + Q + + +D ++
Sbjct: 29 GLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRY 69
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 32.8 bits (73), Expect = 0.10
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 425 IQSGSMTSVIGSSGSGKSTLAMLLL 449
I++GS+T + G +GK+ + L
Sbjct: 20 IETGSITEMFGEFRTGKTQICHTLA 44
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3'
phosphatase, C-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 172
Score = 32.1 bits (72), Expect = 0.11
Identities = 16/79 (20%), Positives = 21/79 (26%), Gaps = 2/79 (2%)
Query: 420 DLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRL--YDPQNGKILIDGVDIKELDPMYLRSQ 477
SL + + +G G+GKST L Y N L LR
Sbjct: 6 SSSLLSPNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLGSWQRCVSSCQAALRQG 65
Query: 478 IGSVSQEPTLFSGTIYENI 496
V + I
Sbjct: 66 KRVVIDNTNPDVPSRARYI 84
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase
domain {Bacteriophage T7 [TaxId: 10760]}
Length = 277
Score = 32.7 bits (73), Expect = 0.11
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 418 LNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGK 458
+ND +L + G + V SG GKST + GK
Sbjct: 25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGK 65
>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain
{Lactobacillus casei [TaxId: 1582]}
Length = 176
Score = 31.8 bits (72), Expect = 0.16
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 7/43 (16%)
Query: 434 IGSSGSGKSTLAMLLLRLYDPQNGKILI--DGVDIKELDPMYL 474
G SG GKS A+ L+ Q G LI D VD+ + D +
Sbjct: 20 TGDSGVGKSETALELV-----QRGHRLIADDRVDVYQQDEQTI 57
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic
domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 251
Score = 32.0 bits (71), Expect = 0.18
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 425 IQSGSMTSVIGSSGSGKSTLAMLLL 449
+++GS+T + G +GKS L L
Sbjct: 31 VETGSITELFGEFRTGKSQLCHTLA 55
>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Bacillus stearothermophilus
[TaxId: 1422]}
Length = 165
Score = 31.4 bits (70), Expect = 0.19
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 432 SVIGSSGSGKSTLAMLLLRLYDPQNGKILI 461
V+G SGK+TL + + ++
Sbjct: 5 QVVGYKHSGKTTLMEKWVAAAVREGWRVGT 34
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 31.5 bits (70), Expect = 0.23
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 425 IQSGSMTSVIGSSGSGKSTLAMLLL 449
+ G T V G+SG+GK+ ++ L
Sbjct: 23 LPIGRSTLVSGTSGTGKTLFSIQFL 47
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 31.8 bits (71), Expect = 0.26
Identities = 7/38 (18%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 425 IQSGSMTSVIGSSGSGKSTLAML-LLRLYDPQNGKILI 461
+ +T + G+GK+ + ++R + + LI
Sbjct: 6 FRKKRLTIMDLHPGAGKTKRYLPAIVREAIKRGLRTLI 43
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic
domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Length = 258
Score = 31.6 bits (70), Expect = 0.27
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 425 IQSGSMTSVIGSSGSGKSTLAM 446
++S S+T G GSGK+ +
Sbjct: 31 LESQSVTEFAGVFGSGKTQIMH 52
>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15
homolog {Human (Homo sapiens) [TaxId: 9606]}
Length = 258
Score = 30.8 bits (68), Expect = 0.38
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 425 IQSGSMTSVIGSSGSGKSTLAM 446
I+S ++T G +GK+ L+
Sbjct: 34 IESMAITEAFGEFRTGKTQLSH 55
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus
halodurans [TaxId: 86665]}
Length = 176
Score = 30.4 bits (67), Expect = 0.38
Identities = 10/36 (27%), Positives = 14/36 (38%), Gaps = 3/36 (8%)
Query: 433 VIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKE 468
+ G +G GKST L + I+G I
Sbjct: 7 ITGPAGVGKSTTCKRLAAQL---DNSAYIEGDIINH 39
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 30.7 bits (68), Expect = 0.42
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 425 IQSGSMTSVIGSSGSGKSTLAMLLL 449
S+ G++G+GK+ L +
Sbjct: 23 FFKDSIILATGATGTGKTLLVSRFV 47
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId:
562]}
Length = 171
Score = 30.4 bits (67), Expect = 0.42
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 433 VIGSSGSGKSTLAMLL 448
++G SGSGKS +A +
Sbjct: 11 LMGVSGSGKSAVASEV 26
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 30.8 bits (68), Expect = 0.46
Identities = 7/22 (31%), Positives = 16/22 (72%)
Query: 425 IQSGSMTSVIGSSGSGKSTLAM 446
+ +G++ +++ G+GKS LA+
Sbjct: 26 MVAGTVGALVSPGGAGKSMLAL 47
>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic
domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 254
Score = 30.4 bits (67), Expect = 0.51
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 425 IQSGSMTSVIGSSGSGKSTLAM 446
I++ ++T V G GSGK+ LA
Sbjct: 33 IETQAITEVFGEFGSGKTQLAH 54
>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides
[TaxId: 1063]}
Length = 288
Score = 30.7 bits (69), Expect = 0.52
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 433 VIGSSGSGKSTLAMLLLRLYDPQNGKILI 461
V GSSG+G ST+ +++ + K +
Sbjct: 9 VTGSSGAGTSTVKHTFDQIFRREGVKAVS 37
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain
{Bacteriophage T4 [TaxId: 10665]}
Length = 152
Score = 29.7 bits (65), Expect = 0.58
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 433 VIGSSGSGKSTLAMLLLRLY 452
IG GSGKST A +
Sbjct: 7 TIGCPGSGKSTWAREFIAKN 26
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain
{Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 183
Score = 30.1 bits (66), Expect = 0.58
Identities = 6/17 (35%), Positives = 7/17 (41%)
Query: 434 IGSSGSGKSTLAMLLLR 450
G SGK +A L
Sbjct: 12 TGYMNSGKDAIARALQV 28
>d1ge9a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Aquifex
aeolicus [TaxId: 63363]}
Length = 184
Score = 29.9 bits (67), Expect = 0.67
Identities = 23/183 (12%), Positives = 61/183 (33%), Gaps = 26/183 (14%)
Query: 145 MNVSAQSITKKLRERLFGSIISQETAYFDKHKTG----ELINRISADT----SLVSQCVT 196
M + I K+ + + ++ + +T L+ I + + Q T
Sbjct: 1 MIKELEDIFKEAEKDMKKAVEYYKNE-IAGLRTSRASTALVEEIKVEYYGSKVPIKQLGT 59
Query: 197 QNISDGLRSTVMVSAGVSMMFIISSKLALISLIIVPPVAGLAIVYGKFVRKITRNVQDKL 256
++ + + + V ++ I + ++L + + + R + L
Sbjct: 60 ISVPEHNQIVIQVWDQNAVPAIEKAIREELNLNPTVQGNVIRVTLPPLTEERRRELVRLL 119
Query: 257 ANAVQVAEERISNIR-----TVKSFS----------QEKLEMSH--FNAKMDDLFELAKK 299
+ A R+ N+R ++ E+L+ + +++ L E +K
Sbjct: 120 HKITEEARVRVRNVRREAKEMIEELEGISEDEKKRALERLQKLTDKYIDEINKLMEAKEK 179
Query: 300 EAL 302
E +
Sbjct: 180 EIM 182
>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain
{Mycoplasma pneumoniae [TaxId: 2104]}
Length = 177
Score = 29.5 bits (66), Expect = 0.78
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 434 IGSSGSGKSTLAMLLLR 450
G SG GKS A+ L+
Sbjct: 21 TGRSGIGKSECALDLIN 37
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId:
562]}
Length = 205
Score = 29.4 bits (65), Expect = 0.90
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 428 GSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILI 461
G++ V SG+GKS+L LL+ + ++ +
Sbjct: 2 GTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSV 35
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB
{Escherichia coli [TaxId: 562]}
Length = 433
Score = 29.9 bits (66), Expect = 0.98
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 431 TSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIK 467
V G++G+GKS L L + +++I VD
Sbjct: 53 LLVNGATGTGKSVLLRELAYTGLLRGDRMVI--VDPN 87
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 182
Score = 29.2 bits (64), Expect = 1.0
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 428 GSMTSVIGSSGSGKSTLAMLLLRLYDP 454
G + + G S GKST+ L
Sbjct: 2 GRVVVLSGPSAVGKSTVVRCLRERIPN 28
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major
[TaxId: 5664]}
Length = 174
Score = 29.2 bits (64), Expect = 1.1
Identities = 7/41 (17%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 433 VIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMY 473
+ G+ G+GK+++A ++ +G ++ + + + Y
Sbjct: 10 ITGTPGTGKTSMAEMIAAEL---DGFQHLEVGKLVKENHFY 47
>d1zbsa2 c.55.1.5 (A:1-107) Hypothetical protein PG1100
{Porphyromonas gingivalis [TaxId: 837]}
Length = 107
Score = 28.0 bits (62), Expect = 1.4
Identities = 11/54 (20%), Positives = 19/54 (35%)
Query: 33 SKWKLQNNEKIISRYYTSTPNNQKVGTKIKKSELKKLFTLAKSEKRKLTGAVCL 86
+ W + K + R+ TS N + + L+ A +K AV
Sbjct: 12 TDWCIAKEGKSLGRFQTSGINPFQQDRNEIDTALRSEVLPAIGQKASSIRAVYF 65
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR,
ribosylnicotinamide kinase domain {Haemophilus
influenzae [TaxId: 727]}
Length = 192
Score = 28.9 bits (63), Expect = 1.5
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 432 SVIGSSGSGKSTLAMLLLRLYD 453
+++G SGKS L L +++
Sbjct: 11 AILGGESSGKSVLVNKLAAVFN 32
>d1bifa1 c.37.1.7 (A:37-249)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 213
Score = 28.8 bits (63), Expect = 1.6
Identities = 6/34 (17%), Positives = 12/34 (35%)
Query: 433 VIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDI 466
++G GK+ ++ L R + V
Sbjct: 7 MVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQ 40
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli
[TaxId: 562]}
Length = 169
Score = 28.5 bits (62), Expect = 1.7
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 433 VIGSSGSGKSTLAMLL 448
++G G+GKST+ L
Sbjct: 7 LVGPMGAGKSTIGRQL 22
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS
kinase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 195
Score = 28.5 bits (62), Expect = 1.8
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 434 IGSSGSGKSTLAMLLLRLY 452
G SG+GK+T++M L
Sbjct: 25 TGLSGAGKTTVSMALEEYL 43
>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK
{Escherichia coli [TaxId: 562]}
Length = 327
Score = 29.1 bits (64), Expect = 1.8
Identities = 19/95 (20%), Positives = 31/95 (32%), Gaps = 6/95 (6%)
Query: 433 VIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTI 492
V G+ G+GKST L + K+ + V DP + GS+ + T +
Sbjct: 59 VTGTPGAGKSTFLEAFGMLLIREGLKVAVIAV-----DPSSPVTG-GSILGDKTRMNDLA 112
Query: 493 YENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDF 527
+ SS A+E +
Sbjct: 113 RAEAAFIRPVPSSGHLGGASQRARELMLLCEAAGY 147
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 190
Score = 28.4 bits (62), Expect = 1.8
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 433 VIGSSGSGKSTLAMLLLRLYD 453
+ G SG+GKSTL L + +
Sbjct: 5 LSGPSGAGKSTLLKKLFQEHS 25
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium
extorquens [TaxId: 408]}
Length = 323
Score = 29.1 bits (64), Expect = 1.9
Identities = 11/34 (32%), Positives = 14/34 (41%)
Query: 433 VIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDI 466
+ G G GKST L L K+ + VD
Sbjct: 56 ITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDP 89
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 283
Score = 28.6 bits (62), Expect = 2.0
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 423 LKIQSGSMTSVIGSSGSGKSTLAMLLLR 450
LK +T V+G +GKS++ + +
Sbjct: 24 LKGLRAPITLVLGLRRTGKSSIIKIGIN 51
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId:
9606]}
Length = 168
Score = 28.2 bits (61), Expect = 2.2
Identities = 23/157 (14%), Positives = 46/157 (29%), Gaps = 3/157 (1%)
Query: 433 VIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTI 492
++G+ G GKS LA + + D + D + S + E
Sbjct: 6 LLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLP 65
Query: 493 YENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAI 552
+ G + +D K + + + D + G + + +++
Sbjct: 66 GHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSV 125
Query: 553 ARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE 589
TSA N VQ+ E ++
Sbjct: 126 DEGRACAVVFDCKFIETSAALHHN---VQALFEGVVR 159
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 186
Score = 28.0 bits (61), Expect = 2.5
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 433 VIGSSGSGKSTLAMLLLRLYD 453
+ G SG+GKSTL L Y
Sbjct: 6 ISGPSGTGKSTLLKKLFAEYP 26
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens),
isoenzyme 6 [TaxId: 9606]}
Length = 173
Score = 28.0 bits (61), Expect = 2.5
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 433 VIGSSGSGKSTLAMLLLRLYD 453
+ G+ G GK+TL L
Sbjct: 9 LTGTPGVGKTTLGKELASKSG 29
>d1p9oa_ c.72.3.1 (A:) Phosphopantothenoylcysteine synthetase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 290
Score = 28.3 bits (62), Expect = 2.6
Identities = 6/50 (12%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 571 ALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQICVLDKGKIVEI 620
L+ + ++ A + L + + +A+ L + + + + ++ K ++
Sbjct: 214 KLETDPAIVINRARKALEIYQHQVVVANILES--RQSFVLIVTKDSETKL 261
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 27.7 bits (60), Expect = 2.9
Identities = 17/157 (10%), Positives = 44/157 (28%), Gaps = 3/157 (1%)
Query: 433 VIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTI 492
++G +GK+T+ L + V+ E + +
Sbjct: 5 MVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHY 64
Query: 493 YENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAI 552
++N + S + + A +E + ++ + + + + I
Sbjct: 65 FQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITD 124
Query: 553 ARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE 589
L +AT A + + ++ L
Sbjct: 125 KLGLHSLRHRNWYIQATCATSGDG---LYEGLDWLSN 158
>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 175
Score = 27.6 bits (60), Expect = 3.0
Identities = 29/178 (16%), Positives = 57/178 (32%), Gaps = 14/178 (7%)
Query: 433 VIGSSGSGKSTLAMLLLR-LYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGT 491
V+G + SGKS+L L Y +D I + P
Sbjct: 10 VLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPDAKFSG 69
Query: 492 IYENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIA 551
+ +++ + + + + ++ + + I S + A
Sbjct: 70 WADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDA 129
Query: 552 IARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQI 609
ARAL K E T A N ++++ + +A ++ T+RK Q+
Sbjct: 130 RARALCADMKRCSYYE-TCATYGLN-------VDRVFQ-----EVAQKVVTLRKQQQL 174
>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo
sapiens) [TaxId: 9606]}
Length = 172
Score = 27.8 bits (60), Expect = 3.1
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 433 VIGSSGSGKSTLAMLLLRLYDPQNGKI 459
+IG G GKSTLA + ++D +
Sbjct: 8 LIGEQGVGKSTLANIFAGVHDSMDSDC 34
>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 133
Score = 27.4 bits (60), Expect = 3.1
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 428 GSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILI 461
G + ++G SGKST M +R + K L+
Sbjct: 2 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLV 35
>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId:
2336]}
Length = 308
Score = 28.1 bits (61), Expect = 3.3
Identities = 8/44 (18%), Positives = 18/44 (40%)
Query: 566 DEATSALDAENEYLVQSAIEKLIEGKTVLTIAHRLSTIRKSNQI 609
DE S LD N + +++ + + I H + ++ +
Sbjct: 248 DEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLL 291
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 175
Score = 27.3 bits (59), Expect = 3.8
Identities = 29/168 (17%), Positives = 60/168 (35%), Gaps = 15/168 (8%)
Query: 433 VIGSSGSGKSTLAMLLLR-----LYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTL 487
++G SG GK++L + Y G + + D + + QE
Sbjct: 7 ILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQ 66
Query: 488 FSGTIY----ENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLS 543
G + + + + +++ + +I E + V + I+G +
Sbjct: 67 SLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEE 126
Query: 544 GGQKQRIAIARALIKKSKILLLDEATSALDAEN-----EYLVQSAIEK 586
+ A+ L K + L TSA +A N E + +SA+++
Sbjct: 127 SKKIVSEKSAQELAKSLGDIPLFL-TSAKNAINVDTAFEEIARSALQQ 173
>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide
phosphate guanylyltransferase CobU {Salmonella
typhimurium [TaxId: 90371]}
Length = 180
Score = 27.3 bits (60), Expect = 4.3
Identities = 9/25 (36%), Positives = 11/25 (44%)
Query: 430 MTSVIGSSGSGKSTLAMLLLRLYDP 454
M V G + SGKS A L+
Sbjct: 1 MILVTGGARSGKSRHAEALIGDAPQ 25
>g1xew.1 c.37.1.12 (X:,Y:) Smc head domain {Pyrococcus furiosus
[TaxId: 2261]}
Length = 329
Score = 27.6 bits (60), Expect = 4.5
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
Query: 537 ERGIMLSGGQKQRIAI----ARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIEGKT 592
+R +SGG+K A+ A K + L DE + LD N V I++ +
Sbjct: 220 KRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQ 279
Query: 593 VLTIAHRLSTIRKSNQI 609
+ I R + +++I
Sbjct: 280 FIVITLRDVMMANADKI 296
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum
[TaxId: 44689]}
Length = 194
Score = 27.2 bits (59), Expect = 4.6
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 433 VIGSSGSGKSTLAMLLLRLYD 453
V+G GSGK T ++R +
Sbjct: 11 VLGGPGSGKGTQCANIVRDFG 31
>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human
(Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 27.1 bits (59), Expect = 5.1
Identities = 4/18 (22%), Positives = 10/18 (55%)
Query: 433 VIGSSGSGKSTLAMLLLR 450
++G+ G G+ + L+
Sbjct: 8 LLGAHGVGRRHIKNTLIT 25
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 27.2 bits (59), Expect = 5.1
Identities = 22/157 (14%), Positives = 45/157 (28%), Gaps = 3/157 (1%)
Query: 433 VIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTLFSGTI 492
++G +GK+TL L + + L ++ + +
Sbjct: 21 LLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSY 80
Query: 493 YENILYGVNDSSSVTKSDIIHAAKEANAYGFVIDFKNGFDTIVGERGIMLSGGQKQRIAI 552
+EN + S + +E I + +L+ IA
Sbjct: 81 FENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAE 140
Query: 553 ARALIKKSKILLLDEATSALDAENEYLVQSAIEKLIE 589
L + ++ SAL E VQ + + +
Sbjct: 141 GLNLHTIRDRVWQIQSCSALTGEG---VQDGMNWVCK 174
>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis
elegans [TaxId: 6239]}
Length = 277
Score = 27.5 bits (60), Expect = 5.5
Identities = 13/57 (22%), Positives = 19/57 (33%)
Query: 394 HSLKGEIDFNNIRFSYPSRPDAVILNDLSLKIQSGSMTSVIGSSGSGKSTLAMLLLR 450
L G + + D VI + + G +GSGKS +A L
Sbjct: 10 KLLLGNVPKQMTCYIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALS 66
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 27.2 bits (59), Expect = 5.5
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 433 VIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMY 473
+ G GSGK++L + I+ID K+ P +
Sbjct: 37 LGGQPGSGKTSLRSAIFEETQGNV--IVIDNDTFKQQHPNF 75
>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni
[TaxId: 197]}
Length = 161
Score = 26.8 bits (58), Expect = 5.6
Identities = 11/16 (68%), Positives = 11/16 (68%)
Query: 433 VIGSSGSGKSTLAMLL 448
IG GSGKSTLA L
Sbjct: 5 FIGFMGSGKSTLARAL 20
>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP)
carboxykinase (ATP-oxaloacetate carboxy-lyase)
{Trypanosoma cruzi [TaxId: 5693]}
Length = 323
Score = 27.2 bits (60), Expect = 5.8
Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 15/65 (23%)
Query: 428 GSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMYLRSQIGSVSQEPTL 487
G +T G SG+GK+TL+ DP + ++ D ++ + G + E
Sbjct: 14 GDVTVFFGLSGTGKTTLSA------DP-HRNLI--------GDDEHVWTDRGVFNIEGGC 58
Query: 488 FSGTI 492
++ I
Sbjct: 59 YAKAI 63
>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 182
Score = 26.8 bits (58), Expect = 6.0
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 433 VIGSSGSGKSTLAMLLLRLYD 453
++G G+GK T A ++ Y
Sbjct: 5 LMGLPGAGKGTQAEKIVAAYG 25
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea
mays) [TaxId: 4577]}
Length = 189
Score = 26.8 bits (58), Expect = 6.7
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 433 VIGSSGSGKSTLAMLLLRLYD 453
+ G+ SGK T L+ Y
Sbjct: 8 ISGAPASGKGTQCELIKTKYQ 28
>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
globisporus [TaxId: 1459]}
Length = 182
Score = 26.8 bits (58), Expect = 6.8
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 433 VIGSSGSGKSTLAMLLLRLYD 453
++G G+GK T A ++ Y
Sbjct: 5 LMGLPGAGKGTQADRIVEKYG 25
>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId:
9606]}
Length = 194
Score = 26.9 bits (58), Expect = 7.1
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 433 VIGSSGSGKSTLAMLLLRLYD 453
V+G G+GK T ++ Y
Sbjct: 6 VLGGPGAGKGTQCARIVEKYG 26
>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia
coli [TaxId: 562]}
Length = 179
Score = 26.8 bits (58), Expect = 7.1
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 433 VIGSSGSGKSTLAMLLLRLYD 453
++G+ +GK T A ++ Y
Sbjct: 5 LLGAPVAGKGTQAQFIMEKYG 25
>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 165
Score = 26.5 bits (57), Expect = 7.1
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 433 VIGSSGSGKSTLAMLL 448
++G GSGKST+ L
Sbjct: 6 LVGLPGSGKSTIGRRL 21
>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 196
Score = 26.9 bits (58), Expect = 7.2
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 433 VIGSSGSGKSTLAMLLLRLYD 453
V+G G+GK T L++ Y
Sbjct: 13 VLGGPGAGKGTQCEKLVKDYS 33
>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 180
Score = 26.4 bits (57), Expect = 7.3
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 433 VIGSSGSGKSTLAMLLLRLYD 453
+IG G+GK T A L +
Sbjct: 7 LIGPPGAGKGTQAPNLQERFH 27
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus
voltae [TaxId: 2188]}
Length = 190
Score = 26.5 bits (57), Expect = 7.4
Identities = 6/29 (20%), Positives = 11/29 (37%)
Query: 433 VIGSSGSGKSTLAMLLLRLYDPQNGKILI 461
V G G G +T + L + + +
Sbjct: 6 VTGVPGVGSTTSSQLAMDNLRKEGVNYKM 34
>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 197
Score = 26.5 bits (57), Expect = 7.6
Identities = 8/53 (15%), Positives = 14/53 (26%), Gaps = 3/53 (5%)
Query: 424 KIQSGSMTSVI---GSSGSGKSTLAMLLLRLYDPQNGKILIDGVDIKELDPMY 473
K G+ + G+ GSGK+T + +
Sbjct: 2 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKYKNDICLLTEPVEKWRNVNGVNL 54
>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal
domain {Clostridium acetobutylicum [TaxId: 1488]}
Length = 141
Score = 26.2 bits (57), Expect = 7.8
Identities = 9/36 (25%), Positives = 15/36 (41%)
Query: 426 QSGSMTSVIGSSGSGKSTLAMLLLRLYDPQNGKILI 461
G + ++G SGKS + +R KI +
Sbjct: 5 DHGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQV 40
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 194
Score = 26.5 bits (57), Expect = 7.9
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 433 VIGSSGSGKSTLAMLLLRLYDPQNGKILI 461
V G G GKST+ + + D Q I
Sbjct: 6 VTGIPGVGKSTVLAKVKEILDNQGINNKI 34
>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi
[TaxId: 556]}
Length = 170
Score = 26.5 bits (57), Expect = 8.0
Identities = 5/16 (31%), Positives = 10/16 (62%)
Query: 433 VIGSSGSGKSTLAMLL 448
++G+ G G +T+ L
Sbjct: 7 MVGARGCGMTTVGREL 22
>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-3 [TaxId: 9913]}
Length = 189
Score = 26.3 bits (57), Expect = 8.6
Identities = 6/21 (28%), Positives = 15/21 (71%)
Query: 433 VIGSSGSGKSTLAMLLLRLYD 453
++G+ GSGK T++ + + ++
Sbjct: 11 IMGAPGSGKGTVSSRITKHFE 31
>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS
kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 208
Score = 26.3 bits (57), Expect = 9.2
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 422 SLKIQSGSMTSVIGSSGSGKSTLAMLLLR 450
L+ Q G + G S SGKSTLA+ L
Sbjct: 18 ELRNQRGLTIWLTGLSASGKSTLAVELEH 46
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955
{Pyrococcus abyssi [TaxId: 29292]}
Length = 244
Score = 26.5 bits (57), Expect = 9.3
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 431 TSVIGSSGSGKSTLAMLLLRLYDPQNGKILIDGVDI 466
+G++GSGK+TL R Y N K+ +D
Sbjct: 3 VVFVGTAGSGKTTLTGEFGR-YLEDNYKVAYVNLDT 37
>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli
[TaxId: 562]}
Length = 208
Score = 26.3 bits (57), Expect = 9.6
Identities = 9/23 (39%), Positives = 13/23 (56%), Gaps = 3/23 (13%)
Query: 429 SMTSVI---GSSGSGKSTLAMLL 448
S+ ++ G GSGKST+A
Sbjct: 1 SLRYIVALTGGIGSGKSTVANAF 23
>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}
Length = 225
Score = 26.6 bits (57), Expect = 9.8
Identities = 9/28 (32%), Positives = 13/28 (46%), Gaps = 3/28 (10%)
Query: 429 SMTSVI---GSSGSGKSTLAMLLLRLYD 453
++ VI G SG+GK TL +
Sbjct: 1 AIAPVITIDGPSGAGKGTLCKAMAEALQ 28
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.135 0.371
Gapped
Lambda K H
0.267 0.0435 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,242,308
Number of extensions: 105161
Number of successful extensions: 603
Number of sequences better than 10.0: 1
Number of HSP's gapped: 552
Number of HSP's successfully gapped: 131
Length of query: 644
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 553
Effective length of database: 1,158,166
Effective search space: 640465798
Effective search space used: 640465798
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.1 bits)