BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5744
(157 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5R8H5|T2EA_PONAB General transcription factor IIE subunit 1 OS=Pongo abelii
GN=GTF2E1 PE=2 SV=1
Length = 439
Score = 185 bits (469), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 83/135 (61%), Positives = 111/135 (82%)
Query: 9 VHTEVPTSLKQLSRLVVRGFYSIEDSLIIDMLVRNPCMKEDDICELLKFERKMLRARIST 68
V TEVP +LK+L++ V+RGFY IE +L +D+L+RNPC+KE+D+ ELLKF+RK LR+ ++
Sbjct: 6 VLTEVPAALKRLAKYVIRGFYGIEHALALDILIRNPCVKEEDMLELLKFDRKQLRSVLNN 65
Query: 69 LKNDKIIQTRLRMETGLDGKAQKVNYYFINYQTFVNIVKYKLDVMRKRMEMEERDATSRS 128
LK DK I+ R+R+ET DGK + NYYFINY+T VN+VKYKLD MR+R+E +ERD+T+R+
Sbjct: 66 LKGDKFIKCRMRVETAADGKTTRHNYYFINYRTLVNVVKYKLDHMRRRIETDERDSTNRA 125
Query: 129 SFKCPRCLKTFTDLE 143
SFKCP C TFTDLE
Sbjct: 126 SFKCPVCSSTFTDLE 140
>sp|A6QLI8|T2EA_BOVIN General transcription factor IIE subunit 1 OS=Bos taurus GN=GTF2E1
PE=2 SV=1
Length = 438
Score = 184 bits (468), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 83/135 (61%), Positives = 111/135 (82%)
Query: 9 VHTEVPTSLKQLSRLVVRGFYSIEDSLIIDMLVRNPCMKEDDICELLKFERKMLRARIST 68
V TEVP +LK+L++ V+RGFY IE +L +D+L+RNPC+KE+D+ ELLKF+RK LR+ ++
Sbjct: 6 VLTEVPAALKRLAKYVIRGFYGIEHALALDILIRNPCVKEEDMLELLKFDRKQLRSVLNN 65
Query: 69 LKNDKIIQTRLRMETGLDGKAQKVNYYFINYQTFVNIVKYKLDVMRKRMEMEERDATSRS 128
LK DK I+ R+R+ET DGK + NYYFINY+T VN+VKYKLD MR+R+E +ERD+T+R+
Sbjct: 66 LKGDKFIKCRMRVETAADGKTTRHNYYFINYRTLVNVVKYKLDHMRRRIETDERDSTNRA 125
Query: 129 SFKCPRCLKTFTDLE 143
SFKCP C TFTDLE
Sbjct: 126 SFKCPVCSSTFTDLE 140
>sp|P29083|T2EA_HUMAN General transcription factor IIE subunit 1 OS=Homo sapiens
GN=GTF2E1 PE=1 SV=2
Length = 439
Score = 181 bits (460), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 82/135 (60%), Positives = 110/135 (81%)
Query: 9 VHTEVPTSLKQLSRLVVRGFYSIEDSLIIDMLVRNPCMKEDDICELLKFERKMLRARIST 68
V TEVP +LK+L++ V+RGFY IE +L +D+L+RN C+KE+D+ ELLKF+RK LR+ ++
Sbjct: 6 VLTEVPAALKRLAKYVIRGFYGIEHALALDILIRNSCVKEEDMLELLKFDRKQLRSVLNN 65
Query: 69 LKNDKIIQTRLRMETGLDGKAQKVNYYFINYQTFVNIVKYKLDVMRKRMEMEERDATSRS 128
LK DK I+ R+R+ET DGK + NYYFINY+T VN+VKYKLD MR+R+E +ERD+T+R+
Sbjct: 66 LKGDKFIKCRMRVETAADGKTTRHNYYFINYRTLVNVVKYKLDHMRRRIETDERDSTNRA 125
Query: 129 SFKCPRCLKTFTDLE 143
SFKCP C TFTDLE
Sbjct: 126 SFKCPVCSSTFTDLE 140
>sp|Q9D0D5|T2EA_MOUSE General transcription factor IIE subunit 1 OS=Mus musculus
GN=Gtf2e1 PE=2 SV=1
Length = 440
Score = 180 bits (456), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 82/135 (60%), Positives = 110/135 (81%)
Query: 9 VHTEVPTSLKQLSRLVVRGFYSIEDSLIIDMLVRNPCMKEDDICELLKFERKMLRARIST 68
V TEVP +LK+L++ V+RGFY IE L +D+L+RNPC+KE+D+ ELLKF+RK LR+ ++
Sbjct: 6 VLTEVPAALKRLAKYVIRGFYGIEHVLALDILIRNPCVKEEDMLELLKFDRKQLRSVLNN 65
Query: 69 LKNDKIIQTRLRMETGLDGKAQKVNYYFINYQTFVNIVKYKLDVMRKRMEMEERDATSRS 128
LK DK I+ R+R+ET DGK + NYYFINY+T VN+VKYKLD MR+R+E +ER++T+R+
Sbjct: 66 LKGDKFIKCRMRVETAADGKTTRHNYYFINYRTLVNVVKYKLDHMRRRIETDERNSTNRA 125
Query: 129 SFKCPRCLKTFTDLE 143
SFKCP C TFTDLE
Sbjct: 126 SFKCPVCCSTFTDLE 140
>sp|P36100|T2EA_YEAST Transcription initiation factor IIE subunit alpha OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TFA1 PE=1
SV=1
Length = 482
Score = 68.9 bits (167), Expect = 1e-11, Method: Composition-based stats.
Identities = 36/132 (27%), Positives = 73/132 (55%)
Query: 17 LKQLSRLVVRGFYSIEDSLIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQ 76
+K L + VVRGFY L++D ++ + + EDD+ +LL + L I+ L++D++I
Sbjct: 9 VKNLLKFVVRGFYGGSFVLVLDAILFHSVLAEDDLKQLLSINKTELGPLIARLRSDRLIS 68
Query: 77 TRLRMETGLDGKAQKVNYYFINYQTFVNIVKYKLDVMRKRMEMEERDATSRSSFKCPRCL 136
+ E + K+ + YY++ Y ++ +K+K+ + +R++ + + + + CP CL
Sbjct: 69 IHKQREYPPNSKSVERVYYYVKYPHAIDAIKWKVHQVVQRLKDDLDKNSEPNGYMCPICL 128
Query: 137 KTFTDLEPCLLV 148
+T LE L+
Sbjct: 129 TKYTQLEAVQLL 140
>sp|Q557M8|T2EA_DICDI General transcription factor IIE subunit 1 OS=Dictyostelium
discoideum GN=gtf2e1-1 PE=3 SV=1
Length = 456
Score = 66.2 bits (160), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 80/135 (59%), Gaps = 4/135 (2%)
Query: 17 LKQLSRLVVRGFYSIEDSLIIDMLVRNPC-MKEDDICELLKFERKMLRARISTLKNDKII 75
L L ++V+R FY E ++IID L+R +K++D+ L+ ++K +R + LK D ++
Sbjct: 11 LDDLVKMVIRAFYPDEYAVIIDGLLREKKRIKDEDLALRLRIQQKYVRKILMDLKGDSMV 70
Query: 76 QTR-LRMET-GLDGKAQKVNYYFINYQTFVNIVKYKLDVMRKRMEMEERDATSRSSFKCP 133
++ +++E G + + ++I+Y+ ++IVKYKL + RK+ME + ++KC
Sbjct: 71 KSSDVKVEAKGPNERGSTHLLWYIDYKHIIDIVKYKLYMFRKKMESVKVQKIDVQTYKCQ 130
Query: 134 RCLKTFTDLE-PCLL 147
C K +T L+ P LL
Sbjct: 131 TCHKVYTALDIPKLL 145
>sp|Q9P3W1|T2EA_SCHPO Transcription initiation factor IIE subunit alpha
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=tfa1 PE=1 SV=3
Length = 434
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 71/140 (50%), Gaps = 3/140 (2%)
Query: 11 TEVPTSLKQLSRLVVRGFYSIEDSLIIDMLVRNPCMKEDDICELLKFERKMLRARISTLK 70
+ P +++L ++++R FY + +D ++R+ + ++ L+ K R L+
Sbjct: 2 SNAPEIVQRLIKMIMRAFYETRHIIFMDAILRHSALTDEQTALLMGIPIKECRFIAGKLR 61
Query: 71 NDKI--IQTRLRMETGLDGKAQKVNYYFINYQTFVNIVKYKLDVMRKRMEMEERDATSRS 128
D++ IQ+R M+ G + Y++I++ + ++ +K+++ + K +E R+
Sbjct: 62 EDRLLAIQSRTEMKEGQQ-RQYHTTYFYIDFCSTIDSIKWRMHQLVKTVEDRMRNDFDSK 120
Query: 129 SFKCPRCLKTFTDLEPCLLV 148
+ CP C K F+ L+ LV
Sbjct: 121 GYVCPFCNKKFSSLDVLSLV 140
>sp|P0ACL5|GLCC_ECOLI Glc operon transcriptional activator OS=Escherichia coli (strain
K12) GN=glcC PE=4 SV=1
Length = 254
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Query: 30 SIEDSLIIDML--VRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQTRLRMETGLDG 87
SIE LIID + V P E +CE L F R LR ++ L+ II+T G D
Sbjct: 15 SIE-RLIIDGVLKVGQPLPSERRLCEKLGFSRSALREGLTVLRGRGIIET----AQGRDS 69
Query: 88 KAQKVN 93
+ ++N
Sbjct: 70 RVARLN 75
>sp|P0ACL6|GLCC_ECOL6 Glc operon transcriptional activator OS=Escherichia coli O6:H1
(strain CFT073 / ATCC 700928 / UPEC) GN=glcC PE=3 SV=1
Length = 254
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Query: 30 SIEDSLIIDML--VRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQTRLRMETGLDG 87
SIE LIID + V P E +CE L F R LR ++ L+ II+T G D
Sbjct: 15 SIE-RLIIDGVLKVGQPLPSERRLCEKLGFSRSALREGLTVLRGRGIIET----AQGRDS 69
Query: 88 KAQKVN 93
+ ++N
Sbjct: 70 RVARLN 75
>sp|A6NNF4|ZN726_HUMAN Zinc finger protein 726 OS=Homo sapiens GN=ZNF726 PE=2 SV=3
Length = 738
Score = 30.8 bits (68), Expect = 4.0, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 12/57 (21%)
Query: 83 TGLDGKAQKVNYYFINYQTFVNIVKYKLDVMRKRMEMEERDATSRSSFKCPRCLKTF 139
T GKA + Y + F+N+ +YK+ RK+ FKC C+K+F
Sbjct: 138 TTTQGKASQCGKYLKVFYKFINLNRYKIRHTRKK------------PFKCKNCVKSF 182
>sp|Q9YAD5|TFE_AERPE Transcription factor E OS=Aeropyrum pernix (strain ATCC 700893 /
DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=tfe PE=3
SV=2
Length = 189
Score = 30.4 bits (67), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 53/111 (47%), Gaps = 7/111 (6%)
Query: 43 NPCMKEDDICELLKFERKMLRARISTLKNDKIIQTRLRMETGLDGKAQKVNYYF-INYQT 101
N + +DD+ L +++ +R + L + +II +R G + + Y++ I+ T
Sbjct: 44 NGGISDDDLESLTGYKQSDIRRILRLLGDKRIIVSR----KGRHPRKEATRYFWRIDSDT 99
Query: 102 F-VNIVKYKLDVMRKRMEMEERDATSRSSFKCPRCLKTFTDLEPCLLVLWC 151
V+++ K V+ K + E D+ + S + CPRC ++ E L C
Sbjct: 100 INVSLLTLKKKVLEKLVVKEAHDSGN-SYYTCPRCGSKYSFDEAFTLDFTC 149
>sp|Q9ZB10|GAL1_STRTR Galactokinase OS=Streptococcus thermophilus GN=galK PE=3 SV=1
Length = 388
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 49 DDICELLKFERKMLRARISTLKNDKIIQTRLRMETG-LDGKAQKVNYYFINYQTFVNIVK 107
D L+K E ++ RAR L+N + +Q R +ETG L+G + +N ++ + +
Sbjct: 256 DAYSYLIKDENRIKRARHVVLENQRTLQARKALETGDLEGFGRLMNASHVSLEYDYEVTG 315
Query: 108 YKLDVM 113
+LD +
Sbjct: 316 LELDTL 321
>sp|A3MY45|TFE_PYRCJ Transcription factor E OS=Pyrobaculum calidifontis (strain JCM
11548 / VA1) GN=tfe PE=3 SV=1
Length = 170
Score = 29.6 bits (65), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 9/78 (11%)
Query: 66 ISTLKNDKIIQTRLRMETGLDG-KAQKVNYYFINYQTFVN------IVKYKLDVMRKRME 118
IST + +I+Q M+ L G K + Y I Y +VN VKY+ V+R+++
Sbjct: 51 ISTAETRRILQ--YLMKQNLVGVKKRSTEDYRIEYTWYVNDEVISQAVKYRAKVVREKIS 108
Query: 119 MEERDATSRSSFKCPRCL 136
+ + T + + CP C
Sbjct: 109 LMIKALTEEAFYVCPNCF 126
>sp|Q12931|TRAP1_HUMAN Heat shock protein 75 kDa, mitochondrial OS=Homo sapiens GN=TRAP1
PE=1 SV=3
Length = 704
Score = 29.3 bits (64), Expect = 9.4, Method: Composition-based stats.
Identities = 25/118 (21%), Positives = 53/118 (44%), Gaps = 12/118 (10%)
Query: 16 SLKQLSRLVVRGFYSIEDSLIIDMLV------RNP---CMKEDDICELLKFERKMLRARI 66
+L L + S+E +++D R+P C+ E + EL+ + R +L +R+
Sbjct: 535 TLLHLREFDKKKLISVETDIVVDHYKEEKFEDRSPAAECLSEKETEELMAWMRNVLGSRV 594
Query: 67 STLKNDKIIQTRLRMETGLDGKAQKVNYYFINYQTFVNIVKYKLDVMRKRMEMEERDA 124
+ +K + T M T L+ A + +F+ Q + + +++ +E+ R A
Sbjct: 595 TNVKVTLRLDTHPAMVTVLEMGAAR---HFLRMQQLAKTQEERAQLLQPTLEINPRHA 649
>sp|Q03JS8|GAL1_STRTD Galactokinase OS=Streptococcus thermophilus (strain ATCC BAA-491 /
LMD-9) GN=galK PE=3 SV=1
Length = 388
Score = 29.3 bits (64), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 49 DDICELLKFERKMLRARISTLKNDKIIQTRLRMETG-LDGKAQKVNYYFINYQTFVNIVK 107
D L+K E ++ RAR + L+N + +Q R +E G L+G + +N ++ + +
Sbjct: 256 DAYSYLIKDENRIKRARHAVLENQRTLQARKALEAGELEGFGRLMNASHVSLKYDYEVTG 315
Query: 108 YKLDVM 113
+LD +
Sbjct: 316 LELDTL 321
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.138 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,392,641
Number of Sequences: 539616
Number of extensions: 1829660
Number of successful extensions: 8626
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 8613
Number of HSP's gapped (non-prelim): 22
length of query: 157
length of database: 191,569,459
effective HSP length: 108
effective length of query: 49
effective length of database: 133,290,931
effective search space: 6531255619
effective search space used: 6531255619
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (26.2 bits)