Query psy5744
Match_columns 157
No_of_seqs 101 out of 233
Neff 6.8
Searched_HMMs 29240
Date Fri Aug 16 16:55:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5744.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5744hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xub_A DNA-directed RNA polyme 99.3 9.5E-12 3.3E-16 109.4 8.1 111 18-128 347-457 (534)
2 1q1h_A TFE, transcription fact 99.1 2.6E-10 8.9E-15 79.8 7.1 102 20-124 7-109 (110)
3 3r0a_A Putative transcriptiona 98.1 7.1E-05 2.4E-09 53.2 11.7 91 31-124 26-118 (123)
4 1sfx_A Conserved hypothetical 97.9 0.00028 9.4E-09 47.4 11.7 87 30-121 19-105 (109)
5 1xmk_A Double-stranded RNA-spe 97.9 3.2E-05 1.1E-09 51.7 6.1 43 35-77 15-58 (79)
6 2kko_A Possible transcriptiona 97.8 0.00032 1.1E-08 48.6 10.7 83 17-109 11-93 (108)
7 3cuo_A Uncharacterized HTH-typ 97.7 0.00025 8.6E-09 47.3 9.0 73 24-105 17-89 (99)
8 1qbj_A Protein (double-strande 97.7 5.6E-05 1.9E-09 50.6 5.4 45 34-78 13-60 (81)
9 2d1h_A ST1889, 109AA long hypo 97.7 0.00023 7.9E-09 47.9 8.7 83 31-117 21-104 (109)
10 3jth_A Transcription activator 97.7 0.00017 5.8E-09 48.6 7.9 77 21-107 13-89 (98)
11 3u1d_A Uncharacterized protein 97.7 0.00023 7.9E-09 53.1 9.0 94 5-100 4-100 (151)
12 3pqk_A Biofilm growth-associat 97.6 0.00033 1.1E-08 47.6 8.6 77 21-107 13-89 (102)
13 1r1u_A CZRA, repressor protein 97.6 0.00084 2.9E-08 46.1 10.7 78 21-108 16-93 (106)
14 1u2w_A CADC repressor, cadmium 97.5 0.00038 1.3E-08 49.2 8.0 80 21-109 32-111 (122)
15 2oqg_A Possible transcriptiona 97.5 0.0012 4.1E-08 45.2 9.8 73 22-104 12-84 (114)
16 2htj_A P fimbrial regulatory p 97.4 0.00023 7.7E-09 46.8 5.3 44 35-78 4-47 (81)
17 1oyi_A Double-stranded RNA-bin 97.4 0.00012 4.1E-09 49.3 3.4 44 34-78 20-63 (82)
18 2nnn_A Probable transcriptiona 97.4 0.0032 1.1E-07 43.9 11.1 93 1-99 1-100 (140)
19 1qgp_A Protein (double strande 97.3 0.00022 7.7E-09 47.0 4.0 45 34-78 17-64 (77)
20 1ub9_A Hypothetical protein PH 97.3 0.0022 7.5E-08 42.6 9.0 70 26-101 11-80 (100)
21 3f6o_A Probable transcriptiona 97.3 0.0011 3.6E-08 46.5 7.6 76 22-107 9-84 (118)
22 2zkz_A Transcriptional repress 97.3 0.00099 3.4E-08 45.3 7.2 75 23-107 19-93 (99)
23 1r1t_A Transcriptional repress 97.2 0.0051 1.8E-07 43.4 10.6 82 17-108 32-113 (122)
24 3cjn_A Transcriptional regulat 97.2 0.0062 2.1E-07 43.8 11.1 47 32-78 53-99 (162)
25 2jsc_A Transcriptional regulat 97.2 0.0011 3.8E-08 46.4 6.8 70 24-103 14-83 (118)
26 1y0u_A Arsenical resistance op 97.2 0.0011 3.9E-08 44.5 6.4 55 22-78 22-76 (96)
27 2nyx_A Probable transcriptiona 97.1 0.0082 2.8E-07 43.8 10.8 46 33-78 47-92 (168)
28 2heo_A Z-DNA binding protein 1 97.0 0.00084 2.9E-08 42.9 4.6 43 35-77 14-57 (67)
29 2rdp_A Putative transcriptiona 97.0 0.0044 1.5E-07 43.9 8.8 46 33-78 44-89 (150)
30 2hzt_A Putative HTH-type trans 97.0 0.0052 1.8E-07 42.1 8.8 72 22-100 5-77 (107)
31 2y75_A HTH-type transcriptiona 97.0 0.0015 5.1E-08 46.3 6.1 46 33-78 11-59 (129)
32 3cdh_A Transcriptional regulat 97.0 0.0056 1.9E-07 43.7 9.1 48 31-78 43-90 (155)
33 2f2e_A PA1607; transcription f 97.0 0.01 3.6E-07 43.1 10.7 109 26-144 19-141 (146)
34 2vxz_A Pyrsv_GP04; viral prote 97.0 0.0041 1.4E-07 46.3 8.2 83 35-133 15-97 (165)
35 2lkp_A Transcriptional regulat 96.9 0.019 6.6E-07 39.5 11.4 81 16-106 17-97 (119)
36 2xub_A DNA-directed RNA polyme 96.9 0.0014 4.8E-08 57.4 6.4 78 17-102 5-82 (534)
37 1xn7_A Hypothetical protein YH 96.9 0.0018 6.2E-08 42.9 5.4 44 35-78 6-49 (78)
38 3f6v_A Possible transcriptiona 96.9 0.0031 1.1E-07 46.4 7.3 72 23-104 50-121 (151)
39 2fbi_A Probable transcriptiona 96.9 0.02 6.7E-07 39.8 11.1 48 31-78 36-83 (142)
40 2eth_A Transcriptional regulat 96.9 0.012 4.2E-07 42.0 10.2 71 8-78 9-91 (154)
41 2k02_A Ferrous iron transport 96.9 0.0019 6.5E-08 43.8 5.4 45 35-79 6-50 (87)
42 2dk5_A DNA-directed RNA polyme 96.9 0.003 1E-07 42.9 6.4 49 30-78 19-69 (91)
43 2fbh_A Transcriptional regulat 96.8 0.015 5.1E-07 40.6 10.3 48 31-78 37-85 (146)
44 3ech_A MEXR, multidrug resista 96.8 0.0022 7.5E-08 45.3 5.5 48 31-78 37-84 (142)
45 2v79_A DNA replication protein 96.8 0.0056 1.9E-07 44.4 7.7 63 19-81 20-87 (135)
46 2hr3_A Probable transcriptiona 96.8 0.0085 2.9E-07 42.2 8.5 46 33-78 37-83 (147)
47 3k0l_A Repressor protein; heli 96.7 0.013 4.4E-07 42.3 9.5 48 31-78 46-93 (162)
48 2bv6_A MGRA, HTH-type transcri 96.7 0.0072 2.4E-07 42.4 7.9 48 31-78 37-84 (142)
49 2gxg_A 146AA long hypothetical 96.7 0.021 7.1E-07 40.0 10.2 47 31-78 37-83 (146)
50 3bpv_A Transcriptional regulat 96.7 0.069 2.4E-06 36.8 12.7 62 32-99 30-91 (138)
51 1sfu_A 34L protein; protein/Z- 96.7 0.0025 8.6E-08 42.1 4.6 41 38-78 22-62 (75)
52 1jgs_A Multiple antibiotic res 96.7 0.023 8E-07 39.4 10.1 46 33-78 36-81 (138)
53 2lnb_A Z-DNA-binding protein 1 96.6 0.0035 1.2E-07 41.6 5.2 44 35-78 23-67 (80)
54 2vn2_A DNAD, chromosome replic 96.6 0.0042 1.4E-07 44.3 6.1 64 31-98 32-100 (128)
55 3bj6_A Transcriptional regulat 96.6 0.0025 8.5E-08 45.3 4.9 47 32-78 41-87 (152)
56 2jt1_A PEFI protein; solution 96.6 0.0026 8.8E-08 42.1 4.4 45 34-78 7-57 (77)
57 2fsw_A PG_0823 protein; alpha- 96.6 0.013 4.4E-07 40.0 8.1 71 23-100 17-88 (107)
58 3bdd_A Regulatory protein MARR 96.5 0.019 6.6E-07 39.9 9.0 48 31-78 31-78 (142)
59 2a61_A Transcriptional regulat 96.5 0.029 1E-06 39.1 10.0 48 31-78 33-80 (145)
60 3tgn_A ADC operon repressor AD 96.5 0.0097 3.3E-07 41.8 7.3 45 33-78 40-84 (146)
61 3t8r_A Staphylococcus aureus C 96.4 0.0043 1.5E-07 45.1 5.2 46 33-78 13-61 (143)
62 3kp7_A Transcriptional regulat 96.4 0.0064 2.2E-07 43.3 6.0 48 30-78 37-84 (151)
63 4ham_A LMO2241 protein; struct 96.4 0.014 4.9E-07 41.6 7.8 36 43-78 35-71 (134)
64 3tqn_A Transcriptional regulat 96.4 0.014 4.8E-07 40.5 7.6 35 44-78 31-66 (113)
65 4a5n_A Uncharacterized HTH-typ 96.4 0.022 7.4E-07 41.1 8.8 72 21-99 16-88 (131)
66 3lwf_A LIN1550 protein, putati 96.4 0.0071 2.4E-07 45.0 6.3 47 33-79 29-78 (159)
67 2p4w_A Transcriptional regulat 96.4 0.006 2.1E-07 47.0 6.1 55 24-79 8-62 (202)
68 1z7u_A Hypothetical protein EF 96.4 0.02 6.9E-07 39.4 8.3 72 22-100 13-85 (112)
69 2cfx_A HTH-type transcriptiona 96.4 0.0074 2.5E-07 43.4 6.2 47 33-79 7-53 (144)
70 3bro_A Transcriptional regulat 96.4 0.058 2E-06 37.4 10.7 47 32-78 35-83 (141)
71 2w25_A Probable transcriptiona 96.4 0.0077 2.6E-07 43.5 6.2 47 33-79 9-55 (150)
72 1lj9_A Transcriptional regulat 96.4 0.063 2.2E-06 37.4 10.9 48 31-78 29-76 (144)
73 3s2w_A Transcriptional regulat 96.3 0.035 1.2E-06 39.7 9.6 48 31-78 50-97 (159)
74 2cg4_A Regulatory protein ASNC 96.3 0.026 9E-07 40.6 8.9 47 33-79 10-56 (152)
75 3fm5_A Transcriptional regulat 96.3 0.021 7.2E-07 40.5 8.1 76 3-78 3-87 (150)
76 1s3j_A YUSO protein; structura 96.3 0.013 4.4E-07 41.6 6.9 46 33-78 39-84 (155)
77 2ia0_A Putative HTH-type trans 96.2 0.027 9.1E-07 41.9 8.6 47 33-79 19-65 (171)
78 3b73_A PHIH1 repressor-like pr 96.2 0.0048 1.6E-07 43.4 4.2 46 33-78 15-62 (111)
79 1ylf_A RRF2 family protein; st 96.2 0.0076 2.6E-07 43.9 5.4 47 33-79 16-64 (149)
80 1i1g_A Transcriptional regulat 96.2 0.0067 2.3E-07 43.1 5.0 46 33-78 6-51 (141)
81 2p5v_A Transcriptional regulat 96.2 0.011 3.6E-07 43.3 6.2 47 33-79 12-58 (162)
82 2b0l_A GTP-sensing transcripti 96.2 0.0039 1.3E-07 43.0 3.5 36 43-78 40-76 (102)
83 2fa5_A Transcriptional regulat 96.2 0.02 6.8E-07 41.0 7.5 48 31-78 49-96 (162)
84 2dbb_A Putative HTH-type trans 96.2 0.0084 2.9E-07 43.2 5.5 47 33-79 11-57 (151)
85 3nrv_A Putative transcriptiona 96.2 0.015 5.2E-07 41.0 6.8 68 11-78 11-87 (148)
86 1yyv_A Putative transcriptiona 96.2 0.012 4.1E-07 42.1 6.2 68 26-100 30-98 (131)
87 3eco_A MEPR; mutlidrug efflux 96.1 0.078 2.7E-06 36.8 10.3 48 31-78 31-80 (139)
88 3nqo_A MARR-family transcripti 96.1 0.036 1.2E-06 41.3 9.0 50 29-78 39-90 (189)
89 3k69_A Putative transcription 96.1 0.0066 2.3E-07 45.1 4.5 47 33-79 14-62 (162)
90 2pex_A Transcriptional regulat 96.1 0.03 1E-06 39.7 7.9 46 33-78 49-94 (153)
91 2pn6_A ST1022, 150AA long hypo 96.0 0.0084 2.9E-07 43.1 4.9 46 33-78 5-50 (150)
92 1p6r_A Penicillinase repressor 96.0 0.01 3.6E-07 38.4 4.8 47 32-78 10-60 (82)
93 3f3x_A Transcriptional regulat 96.0 0.23 7.8E-06 34.6 12.4 63 30-99 36-98 (144)
94 3oop_A LIN2960 protein; protei 96.0 0.038 1.3E-06 38.7 8.1 48 31-78 37-84 (143)
95 2qww_A Transcriptional regulat 96.0 0.011 3.6E-07 42.1 5.2 47 31-77 41-87 (154)
96 2fu4_A Ferric uptake regulatio 96.0 0.012 4.1E-07 38.2 5.0 47 32-78 18-71 (83)
97 3bja_A Transcriptional regulat 96.0 0.031 1.1E-06 38.6 7.6 47 32-78 34-80 (139)
98 3neu_A LIN1836 protein; struct 96.0 0.033 1.1E-06 39.4 7.7 36 43-78 34-70 (125)
99 1z91_A Organic hydroperoxide r 95.9 0.018 6.1E-07 40.5 6.2 46 33-78 42-87 (147)
100 3i4p_A Transcriptional regulat 95.9 0.01 3.5E-07 43.6 5.0 45 34-78 6-50 (162)
101 1ku9_A Hypothetical protein MJ 95.9 0.17 5.7E-06 35.1 11.1 62 17-78 11-74 (152)
102 1tbx_A ORF F-93, hypothetical 95.9 0.017 5.7E-07 38.6 5.4 48 31-78 8-59 (99)
103 2cyy_A Putative HTH-type trans 95.8 0.0098 3.4E-07 43.0 4.5 46 33-78 9-54 (151)
104 2ek5_A Predicted transcription 95.8 0.034 1.2E-06 39.7 7.1 35 44-78 26-61 (129)
105 1xd7_A YWNA; structural genomi 95.8 0.016 5.4E-07 42.0 5.4 45 34-79 12-57 (145)
106 2e72_A POGO transposable eleme 95.8 0.0037 1.3E-07 37.7 1.5 23 124-146 7-29 (49)
107 3u2r_A Regulatory protein MARR 95.7 0.14 4.9E-06 36.8 10.6 47 32-78 47-95 (168)
108 3df8_A Possible HXLR family tr 95.7 0.022 7.4E-07 39.4 5.8 52 26-78 22-76 (111)
109 1on2_A Transcriptional regulat 95.7 0.018 6.3E-07 40.7 5.5 38 41-78 18-55 (142)
110 3hsr_A HTH-type transcriptiona 95.7 0.016 5.3E-07 40.8 5.0 47 32-78 37-83 (140)
111 2h09_A Transcriptional regulat 95.7 0.018 6E-07 41.5 5.3 44 35-78 44-87 (155)
112 3deu_A Transcriptional regulat 95.7 0.13 4.3E-06 37.4 10.1 46 33-78 55-101 (166)
113 1uly_A Hypothetical protein PH 95.7 0.022 7.4E-07 43.4 6.0 51 27-78 16-66 (192)
114 2frh_A SARA, staphylococcal ac 95.6 0.019 6.6E-07 40.1 5.2 46 33-78 39-86 (127)
115 2e1c_A Putative HTH-type trans 95.6 0.018 6E-07 43.0 5.2 49 30-78 26-74 (171)
116 2fe3_A Peroxide operon regulat 95.5 0.053 1.8E-06 39.1 7.5 80 31-143 22-107 (145)
117 2xig_A Ferric uptake regulatio 95.5 0.11 3.9E-06 37.7 9.3 79 33-143 29-113 (150)
118 2o03_A Probable zinc uptake re 95.5 0.066 2.2E-06 37.9 7.9 45 34-78 14-64 (131)
119 4g6q_A Putative uncharacterize 95.5 0.046 1.6E-06 41.1 7.4 72 24-100 16-88 (182)
120 4hbl_A Transcriptional regulat 95.5 0.036 1.2E-06 39.3 6.5 48 31-78 41-88 (149)
121 3e6m_A MARR family transcripti 95.5 0.043 1.5E-06 39.4 7.0 48 31-78 53-100 (161)
122 3boq_A Transcriptional regulat 95.5 0.026 8.8E-07 40.3 5.6 48 31-78 47-95 (160)
123 3by6_A Predicted transcription 95.4 0.052 1.8E-06 38.4 7.0 35 44-78 33-68 (126)
124 2fxa_A Protease production reg 95.4 0.028 9.5E-07 42.8 5.9 46 33-78 50-95 (207)
125 3g3z_A NMB1585, transcriptiona 95.4 0.024 8.1E-07 39.9 5.2 47 32-78 32-78 (145)
126 1mzb_A Ferric uptake regulatio 95.4 0.045 1.5E-06 39.1 6.7 78 33-142 20-104 (136)
127 2x4h_A Hypothetical protein SS 95.4 0.034 1.2E-06 39.0 6.0 36 43-78 29-64 (139)
128 3c7j_A Transcriptional regulat 95.4 0.05 1.7E-06 42.3 7.4 36 43-78 47-82 (237)
129 1xma_A Predicted transcription 95.4 0.18 6.3E-06 36.5 9.9 63 33-100 43-113 (145)
130 2qlz_A Transcription factor PF 95.3 0.017 5.8E-07 45.5 4.4 53 25-78 6-58 (232)
131 3ihu_A Transcriptional regulat 95.3 0.039 1.3E-06 42.1 6.4 36 43-78 37-72 (222)
132 1v4r_A Transcriptional repress 95.3 0.026 9E-07 38.1 4.9 36 43-78 32-68 (102)
133 3mwm_A ZUR, putative metal upt 95.2 0.069 2.4E-06 38.4 7.2 79 34-143 17-101 (139)
134 2wte_A CSA3; antiviral protein 95.2 0.029 1E-06 44.3 5.5 49 30-78 151-199 (244)
135 1qzz_A RDMB, aclacinomycin-10- 95.2 0.02 6.9E-07 46.6 4.6 75 1-77 1-81 (374)
136 1hw1_A FADR, fatty acid metabo 95.1 0.049 1.7E-06 41.8 6.6 36 43-78 28-64 (239)
137 2k4b_A Transcriptional regulat 95.1 0.026 9.1E-07 38.7 4.4 49 30-78 34-86 (99)
138 3f8m_A GNTR-family protein tra 95.0 0.058 2E-06 42.3 6.8 36 43-79 33-69 (248)
139 3qph_A TRMB, A global transcri 95.0 0.0027 9.2E-08 52.7 -1.2 79 36-123 23-101 (342)
140 3jw4_A Transcriptional regulat 94.9 0.015 5.3E-07 41.1 2.9 46 33-78 43-90 (148)
141 2yu3_A DNA-directed RNA polyme 94.8 0.039 1.3E-06 37.8 4.6 50 30-79 36-87 (95)
142 3sxy_A Transcriptional regulat 94.8 0.058 2E-06 41.1 6.0 36 43-78 33-68 (218)
143 1sd4_A Penicillinase repressor 94.8 0.042 1.4E-06 37.9 4.8 48 31-78 10-61 (126)
144 3eyy_A Putative iron uptake re 94.7 0.096 3.3E-06 37.8 6.9 46 33-78 21-71 (145)
145 4aik_A Transcriptional regulat 94.7 0.31 1.1E-05 34.9 9.6 47 32-78 32-79 (151)
146 4esf_A PADR-like transcription 94.7 0.59 2E-05 32.5 10.7 85 34-123 14-106 (117)
147 2pg4_A Uncharacterized protein 94.7 0.053 1.8E-06 35.9 5.0 42 35-76 19-62 (95)
148 3eet_A Putative GNTR-family tr 94.6 0.089 3.1E-06 41.9 6.9 37 43-79 50-87 (272)
149 3eyi_A Z-DNA-binding protein 1 94.5 0.026 8.8E-07 36.6 2.9 58 34-97 13-71 (72)
150 2w57_A Ferric uptake regulatio 94.5 0.12 4E-06 37.6 6.9 79 33-143 19-104 (150)
151 2wv0_A YVOA, HTH-type transcri 94.5 0.11 3.6E-06 40.7 7.1 36 43-78 31-67 (243)
152 3bwg_A Uncharacterized HTH-typ 94.5 0.092 3.2E-06 40.9 6.6 36 43-78 26-62 (239)
153 3edp_A LIN2111 protein; APC883 94.5 0.078 2.7E-06 41.3 6.2 36 43-78 30-66 (236)
154 1r7j_A Conserved hypothetical 94.5 0.1 3.6E-06 35.2 6.0 35 43-78 19-53 (95)
155 2hs5_A Putative transcriptiona 94.4 0.11 3.8E-06 40.3 7.0 36 43-78 49-84 (239)
156 1okr_A MECI, methicillin resis 94.2 0.039 1.3E-06 37.9 3.5 47 32-78 11-61 (123)
157 2qvo_A Uncharacterized protein 94.2 0.043 1.5E-06 36.5 3.6 48 28-75 9-60 (95)
158 3f8b_A Transcriptional regulat 94.2 0.84 2.9E-05 31.5 10.5 84 34-122 15-108 (116)
159 4esb_A Transcriptional regulat 94.0 0.62 2.1E-05 32.2 9.5 83 34-121 12-102 (115)
160 1hsj_A Fusion protein consisti 93.9 0.17 5.8E-06 42.5 7.7 46 33-78 406-453 (487)
161 1mkm_A ICLR transcriptional re 93.8 0.12 4.3E-06 40.2 6.2 46 33-78 10-56 (249)
162 2g9w_A Conserved hypothetical 93.8 0.1 3.6E-06 36.9 5.3 48 31-78 9-61 (138)
163 2gqq_A Leucine-responsive regu 93.8 0.007 2.4E-07 44.5 -1.1 50 29-78 11-60 (163)
164 4b8x_A SCO5413, possible MARR- 93.8 0.28 9.5E-06 34.9 7.5 46 33-78 37-84 (147)
165 1vd4_A Transcription initiatio 93.7 0.0067 2.3E-07 37.2 -1.1 32 125-156 10-43 (62)
166 2qlz_A Transcription factor PF 93.7 0.18 6.3E-06 39.5 6.9 42 35-77 169-210 (232)
167 2xrn_A HTH-type transcriptiona 93.7 0.1 3.5E-06 40.6 5.4 46 33-78 8-54 (241)
168 3hhh_A Transcriptional regulat 93.6 1.2 4.1E-05 30.9 11.1 83 34-121 16-106 (116)
169 3ic7_A Putative transcriptiona 93.6 0.035 1.2E-06 39.3 2.4 35 44-78 33-68 (126)
170 2esh_A Conserved hypothetical 93.6 1.1 3.7E-05 30.9 10.2 62 33-100 15-85 (118)
171 3dv8_A Transcriptional regulat 93.5 0.17 5.9E-06 37.3 6.3 34 45-78 169-202 (220)
172 2di3_A Bacterial regulatory pr 93.5 0.16 5.4E-06 39.1 6.2 35 43-77 25-60 (239)
173 1p4x_A Staphylococcal accessor 93.5 0.31 1.1E-05 38.4 8.0 47 32-78 159-207 (250)
174 3hrs_A Metalloregulator SCAR; 93.3 0.12 4.1E-06 39.6 5.2 37 42-78 17-53 (214)
175 4fx0_A Probable transcriptiona 93.3 0.27 9.2E-06 35.1 6.8 44 33-76 35-83 (148)
176 2w48_A Sorbitol operon regulat 93.3 0.14 5E-06 41.3 5.9 44 35-78 11-54 (315)
177 3l7w_A Putative uncharacterize 93.2 1.3 4.4E-05 30.0 11.3 84 34-123 12-101 (108)
178 2oz6_A Virulence factor regula 93.0 0.097 3.3E-06 38.3 4.2 33 46-78 165-197 (207)
179 3ri2_A Transcriptional regulat 93.0 1.6 5.5E-05 30.6 11.6 99 14-122 7-112 (123)
180 3cuq_B Vacuolar protein-sortin 93.0 0.46 1.6E-05 36.9 8.1 46 33-78 156-201 (218)
181 3ryp_A Catabolite gene activat 93.0 0.1 3.5E-06 38.3 4.2 34 45-78 167-200 (210)
182 1z6r_A MLC protein; transcript 93.0 0.15 5.2E-06 42.2 5.7 45 34-78 19-63 (406)
183 2xvc_A ESCRT-III, SSO0910; cel 92.9 0.18 6.3E-06 31.4 4.6 43 35-77 14-57 (59)
184 2hoe_A N-acetylglucosamine kin 92.9 0.13 4.3E-06 42.5 5.1 43 35-78 24-66 (380)
185 4ev0_A Transcription regulator 92.8 0.11 3.7E-06 38.3 4.2 34 45-78 163-196 (216)
186 3iwz_A CAP-like, catabolite ac 92.7 0.11 3.9E-06 38.6 4.2 33 46-78 188-220 (230)
187 4a6d_A Hydroxyindole O-methylt 92.6 0.25 8.7E-06 40.3 6.5 60 19-78 10-76 (353)
188 1bia_A BIRA bifunctional prote 92.6 0.15 5E-06 41.6 5.0 45 34-78 8-52 (321)
189 2p8t_A Hypothetical protein PH 92.6 0.18 6.1E-06 38.9 5.2 37 43-79 28-64 (200)
190 3b02_A Transcriptional regulat 92.5 0.42 1.4E-05 34.8 7.1 33 46-78 140-172 (195)
191 3k2z_A LEXA repressor; winged 92.5 0.16 5.6E-06 38.1 4.8 44 35-78 9-57 (196)
192 2fbk_A Transcriptional regulat 92.5 0.1 3.6E-06 38.2 3.7 46 33-78 71-119 (181)
193 3rkx_A Biotin-[acetyl-COA-carb 92.5 0.17 5.9E-06 41.4 5.3 43 35-77 7-51 (323)
194 2gau_A Transcriptional regulat 92.4 0.13 4.5E-06 38.4 4.2 34 45-78 180-213 (232)
195 2zcw_A TTHA1359, transcription 92.3 0.14 4.8E-06 37.6 4.2 33 46-78 147-179 (202)
196 2dql_A PEX protein; circadian 92.1 2 6.9E-05 29.5 11.1 64 34-101 25-95 (115)
197 3e97_A Transcriptional regulat 92.0 0.15 5E-06 38.2 4.1 34 45-78 175-208 (231)
198 3elk_A Putative transcriptiona 92.0 0.36 1.2E-05 33.6 5.8 83 34-121 17-107 (117)
199 3la7_A Global nitrogen regulat 92.0 0.16 5.3E-06 38.7 4.2 34 45-78 193-226 (243)
200 1yg2_A Gene activator APHA; vi 92.0 0.36 1.2E-05 35.8 6.1 44 34-78 5-56 (179)
201 3d0s_A Transcriptional regulat 91.8 0.17 5.8E-06 37.7 4.2 34 45-78 177-210 (227)
202 1j5y_A Transcriptional regulat 91.7 0.23 8E-06 37.1 4.9 44 34-77 24-69 (187)
203 4a0z_A Transcription factor FA 91.7 0.24 8.1E-06 37.7 4.9 46 32-77 13-58 (190)
204 2k9l_A RNA polymerase sigma fa 91.7 1.4 4.8E-05 28.3 8.0 63 7-70 5-73 (76)
205 1p4x_A Staphylococcal accessor 91.7 0.22 7.5E-06 39.3 4.9 82 33-120 36-121 (250)
206 3e6c_C CPRK, cyclic nucleotide 91.6 0.85 2.9E-05 34.5 8.0 34 45-78 177-210 (250)
207 1ft9_A Carbon monoxide oxidati 91.5 0.16 5.5E-06 37.8 3.7 33 46-78 164-196 (222)
208 2g7u_A Transcriptional regulat 91.4 0.26 8.9E-06 38.6 5.0 45 33-77 16-61 (257)
209 2o0m_A Transcriptional regulat 91.4 0.036 1.2E-06 45.5 0.0 48 31-78 20-67 (345)
210 1z05_A Transcriptional regulat 91.3 0.3 1E-05 40.9 5.6 45 34-78 42-86 (429)
211 2o0y_A Transcriptional regulat 91.3 0.25 8.4E-06 38.8 4.7 44 34-77 26-70 (260)
212 2e1n_A PEX, period extender; c 91.2 0.63 2.1E-05 33.5 6.6 63 34-100 37-106 (138)
213 3kcc_A Catabolite gene activat 91.2 0.21 7.1E-06 38.5 4.2 34 45-78 217-250 (260)
214 2fmy_A COOA, carbon monoxide o 91.2 0.24 8.3E-06 36.7 4.5 34 45-78 167-200 (220)
215 2obp_A Putative DNA-binding pr 91.1 0.47 1.6E-05 32.3 5.5 42 44-89 35-76 (96)
216 1zyb_A Transcription regulator 91.1 0.21 7E-06 37.6 4.0 69 10-78 131-219 (232)
217 3mq0_A Transcriptional repress 91.0 0.24 8.1E-06 39.4 4.4 44 34-77 33-77 (275)
218 2bgc_A PRFA; bacterial infecti 90.9 0.23 7.7E-06 37.6 4.0 34 45-78 169-203 (238)
219 3dkw_A DNR protein; CRP-FNR, H 90.8 0.15 5E-06 37.9 2.9 34 45-78 178-211 (227)
220 3r4k_A Transcriptional regulat 90.6 0.2 6.8E-06 39.4 3.7 45 33-77 8-53 (260)
221 1x19_A CRTF-related protein; m 90.6 0.48 1.6E-05 38.3 6.0 66 12-78 26-97 (359)
222 1bja_A Transcription regulator 90.5 0.48 1.6E-05 32.3 5.0 43 34-76 19-62 (95)
223 1tw3_A COMT, carminomycin 4-O- 90.4 0.44 1.5E-05 38.4 5.6 45 33-78 41-85 (360)
224 3lmm_A Uncharacterized protein 90.2 0.41 1.4E-05 42.3 5.6 45 33-77 432-481 (583)
225 4ayb_P DNA-directed RNA polyme 90.1 0.091 3.1E-06 31.4 0.9 22 128-149 2-23 (48)
226 3mjh_B Early endosome antigen 90.1 0.15 5E-06 28.5 1.7 20 126-145 2-21 (34)
227 2v7f_A RPS19, RPS19E SSU ribos 90.0 0.31 1.1E-05 35.8 4.0 35 44-78 66-114 (150)
228 2ra5_A Putative transcriptiona 90.0 0.078 2.7E-06 41.5 0.7 36 43-78 37-73 (247)
229 2zfw_A PEX; five alpha-helices 89.7 0.53 1.8E-05 34.4 5.1 62 34-99 47-115 (148)
230 2kvh_A Zinc finger and BTB dom 89.6 0.14 4.9E-06 24.8 1.4 17 129-145 3-19 (27)
231 1tc3_C Protein (TC3 transposas 89.6 0.61 2.1E-05 25.9 4.3 29 45-73 21-49 (51)
232 1o5l_A Transcriptional regulat 89.5 0.17 5.8E-06 37.6 2.3 34 45-78 164-197 (213)
233 2i5o_A DNA polymerase ETA; zin 89.4 0.24 8E-06 28.4 2.3 22 125-146 5-26 (39)
234 2qc0_A Uncharacterized protein 89.4 0.94 3.2E-05 37.5 7.0 48 31-78 297-344 (373)
235 1znf_A 31ST zinc finger from X 89.1 0.14 4.9E-06 24.7 1.1 16 130-145 2-17 (27)
236 1fp2_A Isoflavone O-methyltran 89.1 0.41 1.4E-05 38.7 4.5 77 1-78 1-87 (352)
237 2kvf_A Zinc finger and BTB dom 89.1 0.16 5.6E-06 24.7 1.4 17 129-145 3-19 (28)
238 2ip2_A Probable phenazine-spec 89.1 0.7 2.4E-05 36.7 5.8 44 34-78 31-74 (334)
239 2ia2_A Putative transcriptiona 88.8 0.33 1.1E-05 38.2 3.6 45 33-77 23-68 (265)
240 3dp7_A SAM-dependent methyltra 88.6 0.62 2.1E-05 37.9 5.3 43 35-77 39-82 (363)
241 2kvg_A Zinc finger and BTB dom 88.5 0.15 5.2E-06 24.9 1.0 17 129-145 3-19 (27)
242 1p7a_A BF3, BKLF, kruppel-like 88.4 0.21 7.3E-06 26.1 1.6 20 126-145 8-27 (37)
243 2r3s_A Uncharacterized protein 88.3 0.6 2E-05 37.0 4.9 43 34-77 29-71 (335)
244 2m0d_A Zinc finger and BTB dom 88.1 0.22 7.5E-06 24.3 1.5 17 129-145 3-19 (30)
245 1ard_A Yeast transcription fac 88.0 0.19 6.6E-06 24.4 1.2 17 129-145 2-18 (29)
246 1rik_A E6APC1 peptide; E6-bind 88.0 0.19 6.6E-06 24.5 1.2 17 129-145 2-18 (29)
247 2el5_A Zinc finger protein 268 87.9 0.36 1.2E-05 26.0 2.4 31 126-156 7-42 (42)
248 2eof_A Zinc finger protein 268 87.7 0.37 1.3E-05 26.2 2.4 31 126-156 9-44 (44)
249 2elx_A Zinc finger protein 406 87.7 0.29 9.9E-06 25.1 1.8 19 127-145 5-23 (35)
250 3i53_A O-methyltransferase; CO 87.6 0.85 2.9E-05 36.3 5.4 44 34-78 28-71 (332)
251 2m0f_A Zinc finger and BTB dom 87.6 0.24 8.2E-06 24.0 1.4 17 129-145 2-18 (29)
252 2lvu_A Zinc finger and BTB dom 87.4 0.11 3.7E-06 25.1 0.0 17 129-145 2-18 (26)
253 2p5k_A Arginine repressor; DNA 87.4 1.3 4.4E-05 26.5 5.0 38 35-75 9-51 (64)
254 2emb_A Zinc finger protein 473 87.4 0.42 1.4E-05 26.1 2.5 31 126-156 9-44 (44)
255 2eoj_A Zinc finger protein 268 87.3 0.29 9.9E-06 26.7 1.8 31 126-156 9-44 (44)
256 2en3_A ZFP-95, zinc finger pro 87.3 0.3 1E-05 27.0 1.9 32 126-157 9-45 (46)
257 2els_A Zinc finger protein 406 87.0 0.37 1.3E-05 25.0 2.0 20 126-145 6-25 (36)
258 2ytp_A Zinc finger protein 484 86.9 0.47 1.6E-05 26.2 2.5 31 126-156 9-44 (46)
259 1srk_A Zinc finger protein ZFP 86.6 0.38 1.3E-05 24.7 2.0 19 127-145 5-23 (35)
260 2eor_A Zinc finger protein 224 86.6 0.5 1.7E-05 26.0 2.6 31 126-156 9-44 (46)
261 2elm_A Zinc finger protein 406 86.5 0.36 1.2E-05 25.5 1.9 20 126-145 6-25 (37)
262 1fx7_A Iron-dependent represso 86.5 0.89 3E-05 34.8 4.8 32 47-78 26-57 (230)
263 3pwf_A Rubrerythrin; non heme 86.5 0.31 1E-05 36.5 2.0 14 127-140 136-149 (170)
264 1vq8_Z 50S ribosomal protein L 86.3 0.57 2E-05 31.1 3.1 31 110-145 13-43 (83)
265 2elo_A Zinc finger protein 406 86.2 0.28 9.7E-06 25.6 1.3 20 126-145 6-25 (37)
266 2eon_A ZFP-95, zinc finger pro 86.2 0.44 1.5E-05 26.4 2.2 31 126-156 9-44 (46)
267 2en7_A Zinc finger protein 268 86.1 0.38 1.3E-05 26.1 1.9 31 126-156 9-44 (44)
268 2elt_A Zinc finger protein 406 86.1 0.38 1.3E-05 24.8 1.8 20 126-145 6-25 (36)
269 3lst_A CALO1 methyltransferase 86.1 0.85 2.9E-05 36.8 4.7 42 35-77 46-87 (348)
270 2m0e_A Zinc finger and BTB dom 86.0 0.26 8.9E-06 23.8 1.0 16 129-144 2-17 (29)
271 1paa_A Yeast transcription fac 85.9 0.26 9E-06 24.2 1.0 17 129-145 2-18 (30)
272 2elv_A Zinc finger protein 406 85.9 0.43 1.5E-05 24.7 1.9 20 126-145 6-25 (36)
273 2emg_A Zinc finger protein 484 85.9 0.47 1.6E-05 26.1 2.2 31 126-156 9-44 (46)
274 2eoz_A Zinc finger protein 473 85.8 0.44 1.5E-05 26.3 2.1 31 126-156 9-44 (46)
275 2elq_A Zinc finger protein 406 85.8 0.4 1.4E-05 24.9 1.8 20 126-145 6-25 (36)
276 2elr_A Zinc finger protein 406 85.8 0.38 1.3E-05 24.8 1.7 20 126-145 6-25 (36)
277 1w7p_D VPS36P, YLR417W; ESCRT- 85.8 1.3 4.5E-05 39.1 6.0 46 33-78 496-548 (566)
278 6rxn_A Rubredoxin; electron tr 85.8 0.6 2.1E-05 27.6 2.7 29 128-156 3-34 (46)
279 2en9_A Zinc finger protein 28 85.5 0.51 1.7E-05 26.1 2.2 31 126-156 9-44 (46)
280 2ytf_A Zinc finger protein 268 85.4 0.57 1.9E-05 25.7 2.4 31 126-156 9-44 (46)
281 2epc_A Zinc finger protein 32; 85.3 0.44 1.5E-05 25.6 1.8 21 126-146 8-28 (42)
282 2ema_A Zinc finger protein 347 85.2 0.61 2.1E-05 25.6 2.5 31 126-156 9-44 (46)
283 1rim_A E6APC2 peptide; E6-bind 85.2 0.29 9.8E-06 25.3 1.0 17 129-145 2-18 (33)
284 3mcz_A O-methyltransferase; ad 85.2 1.2 4.2E-05 35.5 5.2 42 35-78 48-89 (352)
285 1wi9_A Protein C20ORF116 homol 85.2 1 3.6E-05 29.1 3.8 42 37-78 13-54 (72)
286 2lvt_A Zinc finger and BTB dom 85.4 0.17 5.9E-06 24.9 0.0 17 129-145 2-18 (29)
287 2ytg_A ZFP-95, zinc finger pro 85.0 0.75 2.6E-05 25.2 2.8 31 126-156 9-44 (46)
288 1twf_L ABC10-alpha, DNA-direct 85.0 0.52 1.8E-05 30.4 2.3 18 126-143 25-42 (70)
289 2ytn_A Zinc finger protein 347 85.0 0.58 2E-05 25.7 2.3 31 126-156 9-44 (46)
290 2yti_A Zinc finger protein 347 84.9 0.41 1.4E-05 26.4 1.6 31 126-156 9-44 (46)
291 2eq1_A Zinc finger protein 347 84.9 0.51 1.8E-05 26.0 2.0 31 126-156 9-44 (46)
292 2elp_A Zinc finger protein 406 84.9 0.46 1.6E-05 24.8 1.8 17 126-142 6-22 (37)
293 3gwz_A MMCR; methyltransferase 84.9 0.73 2.5E-05 37.6 3.7 42 35-77 62-103 (369)
294 2kfq_A FP1; protein, de novo p 84.8 0.22 7.6E-06 25.5 0.4 17 129-145 2-18 (32)
295 2eou_A Zinc finger protein 473 84.6 0.54 1.8E-05 25.7 2.0 31 126-156 9-44 (44)
296 1fp1_D Isoliquiritigenin 2'-O- 84.6 0.86 2.9E-05 37.1 4.0 45 34-78 47-101 (372)
297 2yte_A Zinc finger protein 473 84.5 0.44 1.5E-05 25.6 1.6 21 126-146 7-27 (42)
298 2eq3_A Zinc finger protein 347 84.5 0.47 1.6E-05 26.1 1.8 31 126-156 9-44 (46)
299 1lko_A Rubrerythrin all-iron(I 84.4 0.29 1E-05 37.1 1.1 17 128-144 154-170 (191)
300 1klr_A Zinc finger Y-chromosom 84.4 0.29 1E-05 23.8 0.7 16 129-144 2-17 (30)
301 1zg3_A Isoflavanone 4'-O-methy 84.4 1.1 3.9E-05 36.1 4.7 45 34-78 33-81 (358)
302 2ytb_A Zinc finger protein 32; 84.3 0.45 1.5E-05 25.5 1.6 21 126-146 8-28 (42)
303 2lvr_A Zinc finger and BTB dom 84.6 0.2 6.8E-06 24.6 0.0 17 129-145 3-19 (30)
304 2en2_A B-cell lymphoma 6 prote 84.1 0.54 1.8E-05 25.3 1.8 21 126-146 8-28 (42)
305 2ysp_A Zinc finger protein 224 83.8 0.62 2.1E-05 25.6 2.1 31 126-156 9-44 (46)
306 3lmm_A Uncharacterized protein 83.8 0.21 7.2E-06 44.1 0.0 43 35-77 520-562 (583)
307 1stz_A Heat-inducible transcri 83.8 1.6 5.6E-05 35.8 5.4 49 30-78 16-71 (338)
308 2adr_A ADR1; transcription reg 83.8 1.1 3.7E-05 26.0 3.3 21 125-145 26-46 (60)
309 1fv5_A First zinc finger of U- 83.8 0.36 1.2E-05 26.7 1.0 20 126-145 5-24 (36)
310 3p9c_A Caffeic acid O-methyltr 83.8 1.5 5.1E-05 35.8 5.1 44 35-78 44-94 (364)
311 1bbo_A Human enhancer-binding 83.5 1.1 3.9E-05 25.5 3.3 21 125-145 25-45 (57)
312 3j21_i 50S ribosomal protein L 83.4 0.86 3E-05 30.3 2.9 25 109-138 20-44 (83)
313 2epu_A Zinc finger protein 32; 83.4 0.65 2.2E-05 25.5 2.0 31 126-156 9-44 (45)
314 1njq_A Superman protein; zinc- 83.3 0.63 2.2E-05 24.7 1.9 19 127-145 4-22 (39)
315 1u5t_A Appears to BE functiona 83.3 1.5 5.2E-05 34.5 4.8 60 32-98 168-227 (233)
316 2emi_A Zinc finger protein 484 83.3 0.62 2.1E-05 25.6 1.9 31 126-156 9-44 (46)
317 2en6_A Zinc finger protein 268 83.2 0.68 2.3E-05 25.4 2.1 31 126-156 9-44 (46)
318 2qq9_A Diphtheria toxin repres 83.1 1.1 3.7E-05 34.3 3.9 32 47-78 26-57 (226)
319 2enf_A Zinc finger protein 347 83.0 0.54 1.8E-05 25.9 1.6 31 126-156 9-44 (46)
320 1qyp_A RNA polymerase II; tran 82.9 0.3 1E-05 29.8 0.4 19 123-141 37-55 (57)
321 2eos_A B-cell lymphoma 6 prote 82.9 0.56 1.9E-05 25.3 1.6 21 126-146 8-28 (42)
322 3fx3_A Cyclic nucleotide-bindi 82.7 1 3.4E-05 33.6 3.4 30 45-74 178-207 (237)
323 2ept_A Zinc finger protein 32; 82.7 0.69 2.4E-05 24.7 1.9 21 126-146 7-27 (41)
324 2em0_A Zinc finger protein 224 82.7 0.72 2.5E-05 25.3 2.0 31 126-156 9-44 (46)
325 1x4s_A Protein FON, zinc finge 82.7 0.44 1.5E-05 29.8 1.1 21 126-146 23-43 (59)
326 2eow_A Zinc finger protein 347 82.6 0.71 2.4E-05 25.3 2.0 31 126-156 9-44 (46)
327 3uk3_C Zinc finger protein 217 82.5 1 3.5E-05 25.7 2.7 19 127-145 30-48 (57)
328 3cuq_A Vacuolar-sorting protei 82.4 1.2 4.1E-05 35.1 3.8 60 33-99 156-215 (234)
329 1bm9_A RTP, TER, replication t 82.4 11 0.00037 26.7 10.2 64 55-120 50-117 (122)
330 2epv_A Zinc finger protein 268 82.4 0.68 2.3E-05 25.3 1.8 21 126-146 9-29 (44)
331 3eqx_A FIC domain containing t 82.4 3.5 0.00012 34.2 7.0 45 33-77 299-343 (373)
332 2eoy_A Zinc finger protein 473 82.3 0.66 2.3E-05 25.6 1.8 31 126-156 9-45 (46)
333 2ep3_A Zinc finger protein 484 82.2 0.71 2.4E-05 25.4 1.9 31 126-156 9-44 (46)
334 2yu5_A Zinc finger protein 473 82.1 0.65 2.2E-05 25.3 1.7 21 126-146 9-29 (44)
335 2yto_A Zinc finger protein 484 82.0 0.73 2.5E-05 25.4 1.9 31 126-156 9-44 (46)
336 2yts_A Zinc finger protein 484 82.0 0.7 2.4E-05 25.3 1.8 31 126-156 9-44 (46)
337 2emj_A Zinc finger protein 28 81.9 0.7 2.4E-05 25.4 1.8 31 126-156 9-44 (46)
338 2yrj_A Zinc finger protein 473 81.8 0.78 2.7E-05 25.1 1.9 31 126-156 9-44 (46)
339 2ene_A Zinc finger protein 347 81.7 0.74 2.5E-05 25.3 1.8 31 126-156 9-44 (46)
340 2ytj_A Zinc finger protein 484 81.7 0.74 2.5E-05 25.3 1.8 31 126-156 9-44 (46)
341 2eml_A Zinc finger protein 28 81.7 0.74 2.5E-05 25.3 1.8 31 126-156 9-44 (46)
342 2emh_A Zinc finger protein 484 81.7 0.79 2.7E-05 25.2 2.0 31 126-156 9-44 (46)
343 1yuz_A Nigerythrin; rubrythrin 81.6 1.8 6E-05 33.1 4.5 28 114-141 156-183 (202)
344 1fse_A GERE; helix-turn-helix 81.5 2.9 9.8E-05 25.5 4.8 35 34-70 17-51 (74)
345 2em4_A Zinc finger protein 28 81.5 0.76 2.6E-05 25.3 1.8 31 126-156 9-44 (46)
346 2eme_A Zinc finger protein 473 81.5 0.77 2.6E-05 25.1 1.8 31 126-156 9-44 (46)
347 3ulq_B Transcriptional regulat 81.4 2.9 9.9E-05 27.5 5.0 39 31-71 32-70 (90)
348 2emx_A Zinc finger protein 268 81.3 0.79 2.7E-05 24.9 1.9 31 126-156 7-42 (44)
349 2eoo_A ZFP-95, zinc finger pro 81.3 0.83 2.8E-05 25.1 2.0 31 126-156 9-44 (46)
350 2ep2_A Zinc finger protein 484 81.3 0.8 2.7E-05 25.1 1.9 31 126-156 9-44 (46)
351 1f2i_G Fusion of N-terminal 17 81.2 1.2 4E-05 26.9 2.8 19 127-145 47-65 (73)
352 2em7_A Zinc finger protein 224 81.2 0.79 2.7E-05 25.2 1.8 31 126-156 9-44 (46)
353 1x6e_A Zinc finger protein 24; 81.2 1.5 5.2E-05 26.5 3.4 20 126-145 39-58 (72)
354 2emf_A Zinc finger protein 484 81.0 0.8 2.7E-05 25.2 1.8 31 126-156 9-44 (46)
355 2eq0_A Zinc finger protein 347 80.9 0.9 3.1E-05 24.9 2.0 31 126-156 9-44 (46)
356 2eov_A Zinc finger protein 484 80.9 0.71 2.4E-05 25.3 1.5 31 126-156 9-44 (46)
357 2qm3_A Predicted methyltransfe 80.9 2.4 8.3E-05 34.6 5.4 59 13-77 21-87 (373)
358 2em3_A Zinc finger protein 28 80.8 0.82 2.8E-05 25.1 1.8 31 126-156 9-44 (46)
359 2epw_A Zinc finger protein 268 80.7 0.79 2.7E-05 25.1 1.7 31 126-156 9-44 (46)
360 2em9_A Zinc finger protein 224 80.7 0.85 2.9E-05 25.0 1.8 31 126-156 9-44 (46)
361 2el4_A Zinc finger protein 268 80.6 0.83 2.9E-05 25.0 1.8 31 126-156 9-44 (46)
362 2em6_A Zinc finger protein 224 80.6 0.78 2.7E-05 25.3 1.7 31 126-156 9-44 (46)
363 2eox_A Zinc finger protein 473 80.5 0.69 2.4E-05 25.1 1.4 21 126-146 9-29 (44)
364 2em5_A ZFP-95, zinc finger pro 80.5 0.85 2.9E-05 25.1 1.8 31 126-156 9-44 (46)
365 2yu8_A Zinc finger protein 347 80.4 0.84 2.9E-05 25.0 1.7 31 126-156 9-44 (46)
366 2ytk_A Zinc finger protein 347 80.3 0.85 2.9E-05 25.0 1.8 31 126-156 9-44 (46)
367 1x5w_A Zinc finger protein 64, 80.2 1.8 6.3E-05 25.9 3.4 20 126-145 34-53 (70)
368 3jyw_9 60S ribosomal protein L 80.2 0.67 2.3E-05 30.1 1.4 25 109-138 11-35 (72)
369 2eop_A Zinc finger protein 268 80.1 0.82 2.8E-05 25.0 1.6 31 126-156 9-44 (46)
370 2yth_A Zinc finger protein 224 80.1 0.78 2.7E-05 25.2 1.5 31 126-156 9-44 (46)
371 2emm_A ZFP-95, zinc finger pro 80.0 0.94 3.2E-05 24.8 1.9 31 126-156 9-44 (46)
372 2en8_A Zinc finger protein 224 79.9 0.99 3.4E-05 24.7 2.0 31 126-156 9-44 (46)
373 4a17_Y RPL37A, 60S ribosomal p 79.9 1.6 5.6E-05 30.1 3.3 25 109-138 21-45 (103)
374 2emp_A Zinc finger protein 347 79.8 0.94 3.2E-05 24.8 1.8 31 126-156 9-44 (46)
375 2enh_A Zinc finger protein 28 79.7 0.79 2.7E-05 25.2 1.5 31 126-156 9-44 (46)
376 2yso_A ZFP-95, zinc finger pro 79.7 1.1 3.6E-05 24.6 2.0 31 126-156 9-44 (46)
377 2enc_A Zinc finger protein 224 79.6 0.97 3.3E-05 24.8 1.8 31 126-156 9-44 (46)
378 3iuf_A Zinc finger protein UBI 79.4 1 3.6E-05 25.4 2.0 19 127-145 5-23 (48)
379 2elz_A Zinc finger protein 224 79.4 0.87 3E-05 25.0 1.6 31 126-156 9-44 (46)
380 2em8_A Zinc finger protein 224 79.4 0.97 3.3E-05 24.8 1.8 31 126-156 9-44 (46)
381 3iz5_m 60S ribosomal protein L 79.3 1.4 4.7E-05 29.9 2.8 25 109-138 21-45 (92)
382 2emy_A Zinc finger protein 268 79.2 1 3.4E-05 24.7 1.8 31 126-156 9-44 (46)
383 2ely_A Zinc finger protein 224 79.1 0.84 2.9E-05 25.1 1.5 31 126-156 9-44 (46)
384 2emz_A ZFP-95, zinc finger pro 79.0 0.83 2.8E-05 25.1 1.4 31 126-156 9-44 (46)
385 2epz_A Zinc finger protein 28 79.0 0.94 3.2E-05 24.8 1.6 31 126-156 9-44 (46)
386 1yui_A GAGA-factor; complex (D 78.9 1 3.6E-05 25.8 1.9 20 126-145 21-40 (54)
387 2eq2_A Zinc finger protein 347 78.9 0.76 2.6E-05 25.2 1.2 31 126-156 9-44 (46)
388 3c57_A Two component transcrip 78.9 1.9 6.5E-05 28.4 3.4 61 7-70 7-67 (95)
389 2yqq_A Zinc finger HIT domain- 78.9 0.77 2.6E-05 28.3 1.3 19 127-145 21-39 (56)
390 2eq4_A Zinc finger protein 224 78.8 0.88 3E-05 24.9 1.5 31 126-156 9-44 (46)
391 2ep1_A Zinc finger protein 484 78.8 0.8 2.7E-05 25.1 1.3 31 126-156 9-44 (46)
392 2lv2_A Insulinoma-associated p 78.7 1.9 6.4E-05 28.1 3.3 20 126-145 53-72 (85)
393 2epx_A Zinc finger protein 28 78.7 0.93 3.2E-05 24.8 1.6 21 126-146 9-29 (47)
394 2drp_A Protein (tramtrack DNA- 78.5 1.1 3.7E-05 26.5 2.0 20 126-145 37-56 (66)
395 2em2_A Zinc finger protein 28 78.4 1.1 3.8E-05 24.6 1.8 31 126-156 9-44 (46)
396 1jko_C HIN recombinase, DNA-in 78.3 2.6 8.9E-05 23.5 3.5 27 41-68 18-44 (52)
397 3izc_m 60S ribosomal protein R 78.3 1.5 5.3E-05 29.6 2.8 25 109-138 21-45 (92)
398 1dxg_A Desulforedoxin; non-hem 78.3 1.1 3.8E-05 24.8 1.8 16 126-141 3-18 (36)
399 2el6_A Zinc finger protein 268 78.2 1.1 3.8E-05 24.6 1.8 31 126-156 9-44 (46)
400 2yrm_A B-cell lymphoma 6 prote 78.2 0.99 3.4E-05 24.5 1.6 31 126-156 7-42 (43)
401 2ep0_A Zinc finger protein 28 78.2 1.1 3.8E-05 24.5 1.8 31 126-156 9-44 (46)
402 2lce_A B-cell lymphoma 6 prote 78.0 2.1 7E-05 26.0 3.2 18 127-144 43-60 (74)
403 2epq_A POZ-, at HOOK-, and zin 77.9 1.1 3.7E-05 24.5 1.7 31 126-156 7-42 (45)
404 2en1_A Zinc finger protein 224 77.7 0.97 3.3E-05 24.8 1.4 31 126-156 9-44 (46)
405 2eps_A POZ-, at HOOK-, and zin 77.7 1.7 5.8E-05 24.9 2.6 16 126-141 38-53 (54)
406 2eoq_A Zinc finger protein 224 77.6 0.91 3.1E-05 24.9 1.3 31 126-156 9-44 (46)
407 2eoe_A Zinc finger protein 347 77.6 0.84 2.9E-05 25.0 1.1 31 126-156 9-44 (46)
408 2jpc_A SSRB; DNA binding prote 77.6 2.6 9E-05 24.8 3.5 35 35-71 5-39 (61)
409 2eoh_A Zinc finger protein 28 77.6 0.93 3.2E-05 24.9 1.3 31 126-156 9-44 (46)
410 2emk_A Zinc finger protein 28 77.6 0.99 3.4E-05 24.8 1.5 31 126-156 9-44 (46)
411 2ytr_A Zinc finger protein 347 77.5 0.83 2.8E-05 25.0 1.1 31 126-156 9-44 (46)
412 2ytd_A Zinc finger protein 473 77.5 1.2 4.2E-05 24.3 1.8 31 126-156 9-44 (46)
413 1tfi_A Transcriptional elongat 77.5 0.66 2.2E-05 27.8 0.7 22 120-141 28-49 (50)
414 1u5t_B Defective in vacuolar p 77.4 2.3 7.9E-05 31.6 3.9 44 35-78 103-153 (169)
415 3l9f_A Putative uncharacterize 77.4 3.2 0.00011 31.6 4.8 54 24-79 30-91 (204)
416 2ytq_A Zinc finger protein 268 77.3 1.1 3.7E-05 24.6 1.6 31 126-156 9-44 (46)
417 2eom_A ZFP-95, zinc finger pro 77.3 1 3.4E-05 24.8 1.4 31 126-156 9-44 (46)
418 1ffk_W Ribosomal protein L37AE 77.3 1.4 4.8E-05 28.6 2.3 24 110-138 13-36 (73)
419 2cot_A Zinc finger protein 435 77.2 2.3 7.8E-05 26.0 3.3 22 125-146 42-63 (77)
420 3a43_A HYPD, hydrogenase nicke 76.8 0.6 2.1E-05 33.7 0.4 19 125-143 66-84 (139)
421 2ytm_A Zinc finger protein 28 76.4 1 3.4E-05 24.8 1.2 31 126-156 9-44 (46)
422 1x3u_A Transcriptional regulat 76.3 5.1 0.00018 24.7 4.8 38 31-70 19-56 (79)
423 3cta_A Riboflavin kinase; stru 76.3 6.5 0.00022 29.8 6.3 46 33-78 9-60 (230)
424 2l0k_A Stage III sporulation p 76.0 2.7 9.2E-05 28.2 3.5 35 33-68 9-43 (93)
425 2kmk_A Zinc finger protein GFI 75.9 2.1 7.1E-05 26.1 2.8 16 128-143 56-71 (82)
426 2p7v_B Sigma-70, RNA polymeras 75.8 4.9 0.00017 24.4 4.5 26 44-69 24-49 (68)
427 3u5c_Z RP45, S31, YS23, 40S ri 75.6 3.2 0.00011 28.9 3.9 37 42-78 56-92 (108)
428 4gzn_C ZFP-57, zinc finger pro 75.6 2.3 7.8E-05 25.8 2.8 20 126-145 29-48 (60)
429 2kn9_A Rubredoxin; metalloprot 75.5 2.1 7.3E-05 28.2 2.8 18 126-143 24-41 (81)
430 3cc2_Z 50S ribosomal protein L 75.4 2.2 7.7E-05 30.0 3.1 24 109-137 45-68 (116)
431 2akl_A PHNA-like protein PA012 75.4 0.64 2.2E-05 33.6 0.2 14 127-140 42-55 (138)
432 1sp2_A SP1F2; zinc finger, tra 74.9 1.2 4.2E-05 21.9 1.3 17 129-145 2-20 (31)
433 1je8_A Nitrate/nitrite respons 74.6 5.7 0.0002 25.3 4.8 36 33-70 26-61 (82)
434 3sqn_A Conserved domain protei 74.4 2.4 8.4E-05 36.3 3.7 48 25-72 8-59 (485)
435 2ytt_A Zinc finger protein 473 74.1 1.1 3.9E-05 24.5 1.1 31 126-156 9-44 (46)
436 2ctu_A Zinc finger protein 483 74.0 1.3 4.3E-05 26.5 1.3 21 126-146 15-35 (73)
437 1ucr_A Protein DSVD; dissimila 73.8 4.2 0.00014 26.6 3.8 45 34-78 6-55 (78)
438 1ldj_A Cullin homolog 1, CUL-1 73.6 7 0.00024 35.3 6.7 68 9-77 535-635 (760)
439 1p4w_A RCSB; solution structur 73.6 4.3 0.00015 27.2 4.1 56 14-71 15-75 (99)
440 2o8x_A Probable RNA polymerase 73.3 5.6 0.00019 23.8 4.3 27 44-70 30-56 (70)
441 2pjp_A Selenocysteine-specific 73.1 3.7 0.00013 28.3 3.8 34 45-78 20-53 (121)
442 1ku3_A Sigma factor SIGA; heli 72.9 4.3 0.00015 25.0 3.8 24 44-67 29-52 (73)
443 2ab3_A ZNF29; zinc finger prot 72.5 1.4 4.7E-05 21.0 1.1 17 129-145 2-20 (29)
444 2eod_A TNF receptor-associated 72.4 3.5 0.00012 24.4 3.1 19 125-143 32-51 (66)
445 2xzm_8 RPS25E,; ribosome, tran 72.4 4.1 0.00014 29.7 3.9 35 44-78 62-96 (143)
446 4ets_A Ferric uptake regulatio 72.1 9.3 0.00032 27.7 6.0 48 31-78 33-88 (162)
447 2v3b_B Rubredoxin 2, rubredoxi 71.8 2.4 8.2E-05 25.8 2.2 16 128-143 2-17 (55)
448 1e8j_A Rubredoxin; iron-sulfur 71.7 2.4 8.2E-05 25.5 2.2 16 128-143 2-17 (52)
449 2kdx_A HYPA, hydrogenase/ureas 71.1 1.3 4.4E-05 30.9 1.0 18 125-142 69-86 (119)
450 2lv2_A Insulinoma-associated p 71.0 1.9 6.6E-05 28.0 1.8 31 126-156 25-60 (85)
451 1dx8_A Rubredoxin; electron tr 70.8 2.8 9.5E-05 26.8 2.5 18 126-143 4-21 (70)
452 1t6s_A Conserved hypothetical 70.6 5.6 0.00019 29.4 4.5 36 36-71 11-50 (162)
453 2kmk_A Zinc finger protein GFI 70.5 3.3 0.00011 25.1 2.8 21 126-146 26-46 (82)
454 2ct1_A Transcriptional repress 70.5 2.2 7.6E-05 26.0 1.9 20 126-145 12-31 (77)
455 1llm_C Chimera of ZIF23-GCN4; 70.2 3.4 0.00012 25.8 2.9 20 126-145 28-47 (88)
456 2epr_A POZ-, at HOOK-, and zin 70.2 1.9 6.5E-05 23.9 1.4 31 126-156 9-44 (48)
457 1zfd_A SWI5; DNA binding motif 70.0 1.7 6E-05 21.5 1.1 17 129-145 3-21 (32)
458 2z99_A Putative uncharacterize 69.7 17 0.00057 28.2 7.2 50 30-82 99-148 (219)
459 2dmd_A Zinc finger protein 64, 69.5 4.4 0.00015 25.5 3.3 19 127-145 62-80 (96)
460 2wbs_A Krueppel-like factor 4; 69.4 3.5 0.00012 25.5 2.7 17 128-144 64-80 (89)
461 2rnj_A Response regulator prot 69.4 6.3 0.00022 25.4 4.1 39 30-70 31-69 (91)
462 3f2g_A Alkylmercury lyase; MER 69.2 6.1 0.00021 30.7 4.6 37 34-70 25-61 (220)
463 1a1h_A QGSR zinc finger peptid 68.9 3.8 0.00013 25.4 2.8 21 126-146 31-51 (90)
464 2qen_A Walker-type ATPase; unk 68.8 18 0.0006 28.0 7.3 46 31-77 282-332 (350)
465 2co5_A Viral protein F93; vira 68.7 8.9 0.0003 25.7 4.8 59 33-100 11-76 (99)
466 1a1h_A QGSR zinc finger peptid 68.6 3.9 0.00013 25.3 2.9 20 126-145 59-78 (90)
467 3go5_A Multidomain protein wit 68.6 10 0.00035 30.3 6.0 48 31-78 224-278 (285)
468 1tty_A Sigma-A, RNA polymerase 68.5 5.9 0.0002 25.4 3.8 25 44-68 37-61 (87)
469 2d9h_A Zinc finger protein 692 68.1 2.6 8.9E-05 25.7 1.9 19 127-145 5-23 (78)
470 2pi2_A Replication protein A 3 68.1 1.1 3.6E-05 35.7 0.0 43 35-78 211-257 (270)
471 2ebt_A Krueppel-like factor 5; 68.0 3.9 0.00013 25.8 2.8 17 128-144 44-62 (100)
472 2qby_A CDC6 homolog 1, cell di 67.9 30 0.001 27.0 8.6 74 33-108 288-376 (386)
473 3dfg_A Xcrecx, regulatory prot 67.9 16 0.00054 26.5 6.4 59 18-77 35-99 (162)
474 3hug_A RNA polymerase sigma fa 67.8 8.4 0.00029 24.8 4.5 27 43-69 51-77 (92)
475 1bhi_A CRE-BP1, ATF-2; CRE bin 67.5 3.3 0.00011 21.3 2.0 19 127-145 4-24 (38)
476 3u5c_K 40S ribosomal protein S 67.2 3.5 0.00012 28.6 2.5 39 56-103 36-74 (105)
477 2dmd_A Zinc finger protein 64, 66.7 5.6 0.00019 24.9 3.4 23 123-145 30-52 (96)
478 3maj_A DNA processing chain A; 66.6 6.6 0.00023 33.0 4.6 46 31-77 328-373 (382)
479 3t72_q RNA polymerase sigma fa 66.4 19 0.00063 24.1 6.1 50 18-67 10-61 (99)
480 3po3_S Transcription elongatio 66.2 2.4 8.2E-05 31.8 1.6 19 123-141 159-177 (178)
481 2xzm_7 Plectin/S10 domain cont 66.2 4.8 0.00016 29.8 3.2 38 56-102 36-73 (162)
482 2nz7_A NOD1, caspase recruitme 66.2 6.3 0.00022 26.6 3.6 38 34-72 30-70 (98)
483 2yt9_A Zinc finger-containing 66.2 4.8 0.00016 25.2 2.9 20 126-145 32-51 (95)
484 1yk4_A Rubredoxin, RD; electro 65.7 3.1 0.00011 25.0 1.8 14 129-142 2-15 (52)
485 2xi8_A Putative transcription 65.6 6.8 0.00023 22.8 3.4 26 42-67 11-36 (66)
486 2k9m_A RNA polymerase sigma fa 65.2 13 0.00043 26.3 5.3 53 17-70 6-64 (130)
487 3mzy_A RNA polymerase sigma-H 65.0 26 0.00089 23.8 6.9 27 43-69 122-148 (164)
488 3ygs_P Procaspase 9; apoptosis 64.8 7.4 0.00025 25.9 3.8 37 35-71 25-65 (97)
489 2k5c_A Uncharacterized protein 64.6 2.3 8E-05 28.3 1.1 13 127-139 49-61 (95)
490 2dlq_A GLI-kruppel family memb 64.6 5.4 0.00018 26.1 3.1 18 127-144 92-109 (124)
491 2yt9_A Zinc finger-containing 64.6 5.2 0.00018 25.0 2.9 18 128-145 64-81 (95)
492 3iz6_V 40S ribosomal protein S 64.6 2.9 0.0001 29.1 1.7 40 39-78 54-93 (108)
493 2w7n_A TRFB transcriptional re 64.5 13 0.00043 25.3 4.9 30 43-72 32-61 (101)
494 2csh_A Zinc finger protein 297 64.2 6 0.0002 25.6 3.2 17 128-144 36-52 (110)
495 2a6c_A Helix-turn-helix motif; 63.5 9.5 0.00033 23.9 4.0 29 39-67 25-53 (83)
496 2p1h_A APAF-1, apoptotic prote 63.3 8 0.00027 25.2 3.7 38 34-71 25-64 (94)
497 3h0g_I DNA-directed RNA polyme 63.2 3.3 0.00011 28.7 1.8 21 120-140 91-111 (113)
498 2dk8_A DNA-directed RNA polyme 62.9 10 0.00034 24.9 4.0 43 36-78 19-63 (81)
499 1va1_A Transcription factor SP 62.8 4.6 0.00016 20.8 2.0 20 126-145 5-26 (37)
500 2x48_A CAG38821; archeal virus 62.8 8.4 0.00029 22.1 3.4 24 44-67 30-53 (55)
No 1
>2xub_A DNA-directed RNA polymerase III subunit RPC3; transcription, winged helix; 2.80A {Homo sapiens} PDB: 2xv4_S
Probab=99.26 E-value=9.5e-12 Score=109.43 Aligned_cols=111 Identities=7% Similarity=0.076 Sum_probs=79.9
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeeeEeeeecCCCceeEEEEEEe
Q psy5744 18 KQLSRLVVRGFYSIEDSLIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQTRLRMETGLDGKAQKVNYYFI 97 (157)
Q Consensus 18 ~~Lv~~v~R~Fy~~e~ivIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~~~~e~~~~gk~~~~~yw~I 97 (157)
...+..++..-||++++-|+..|..++.++|++||+..+|+.|++|++|++|.++|+|.++....+...+.+|+.|+|++
T Consensus 347 ~~~ie~ii~~~~G~~a~RI~r~L~~~~~l~d~~ia~~a~i~~k~vR~~Ly~L~~~g~v~~qevp~~~d~~~~~~~ylW~~ 426 (534)
T 2xub_A 347 TATLESVVQERFGSRCARIFRLVLQKKHIEQKQVEDFAMIPAKEAKDMLYKMLSENFMSLQEIPKTPDHAPSRTFYLYTV 426 (534)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHC---CHHHHHHHHCSCHHHHHHHHHHHHHTTCC---------------------C
T ss_pred HHHHHHHHHHHhChHHHHHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCeEEEEccCCCCCCCcceEEEEEE
Confidence 45566778888999999999999999999999999999999999999999999999999985433222235688999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q psy5744 98 NYQTFVNIVKYKLDVMRKRMEMEERDATSRS 128 (157)
Q Consensus 98 ~y~~~~~vik~rl~~m~~~L~~~~~~~~~~~ 128 (157)
|.+.+...+..++.+...+|..+++.+.++.
T Consensus 427 ~~~~~~~~l~~~~~k~l~nl~~Rl~~E~~~~ 457 (534)
T 2xub_A 427 NILSAARMLLHRCYKSIANLIERRQFETKEN 457 (534)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999988875543
No 2
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=99.08 E-value=2.6e-10 Score=79.81 Aligned_cols=102 Identities=12% Similarity=0.190 Sum_probs=67.4
Q ss_pred HHHHHHHHcCCCchHHHHHHHHhCC-CcCHHHHHHHhCCChHHHHHHHHHHhhCcceeeeEeeeecCCCceeEEEEEEec
Q psy5744 20 LSRLVVRGFYSIEDSLIIDMLVRNP-CMKEDDICELLKFERKMLRARISTLKNDKIIQTRLRMETGLDGKAQKVNYYFIN 98 (157)
Q Consensus 20 Lv~~v~R~Fy~~e~ivIlD~L~~~~-~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~~~~e~~~~gk~~~~~yw~I~ 98 (157)
.+..++...+++...-|+..|...| .++..+||+.+|++...||++|..|.++|+|...... . ++ +++..++|.++
T Consensus 7 ~~~~~~~~~~~~~~l~Il~~l~~~g~~~s~~eLa~~lgvs~~tV~~~L~~L~~~GlV~~~~~~-~-~~-~g~~v~~~~~~ 83 (110)
T 1q1h_A 7 LFINLAKSLLGDDVIDVLRILLDKGTEMTDEEIANQLNIKVNDVRKKLNLLEEQGFVSYRKTR-D-KD-SGWFIYYWKPN 83 (110)
T ss_dssp HHHHHHHTTSCSTTHHHHHHHHHHCSCBCHHHHHHTTTSCHHHHHHHHHHHHHHTSCEEEEEC------CCCCEEEEECT
T ss_pred HHHHHHHHHcChHHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecc-c-CC-CceEEEEeecC
Confidence 4567788888988899999998655 7999999999999999999999999999999876432 2 33 45667789999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhc
Q psy5744 99 YQTFVNIVKYKLDVMRKRMEMEERDA 124 (157)
Q Consensus 99 y~~~~~vik~rl~~m~~~L~~~~~~~ 124 (157)
.+.+.+.+..++.+..+++..++..+
T Consensus 84 ~~~i~~~~~~~~~~~~e~l~~~l~~e 109 (110)
T 1q1h_A 84 IDQINEILLNRKRLILDKLKTRLEYE 109 (110)
T ss_dssp HHHHC---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999998887664
No 3
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=98.09 E-value=7.1e-05 Score=53.22 Aligned_cols=91 Identities=18% Similarity=0.291 Sum_probs=69.5
Q ss_pred CchHHHHHHHHhCCC--cCHHHHHHHhCCChHHHHHHHHHHhhCcceeeeEeeeecCCCceeEEEEEEecchhHHHHHHH
Q psy5744 31 IEDSLIIDMLVRNPC--MKEDDICELLKFERKMLRARISTLKNDKIIQTRLRMETGLDGKAQKVNYYFINYQTFVNIVKY 108 (157)
Q Consensus 31 ~e~ivIlD~L~~~~~--i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~~~~e~~~~gk~~~~~yw~I~y~~~~~vik~ 108 (157)
+....|+.+|..++. ++-.+||+.+|++...|.+.|..|.+.|+|...... .+++.....|.-.+...+...++.
T Consensus 26 ~~e~~il~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~L~~L~~~GlV~r~~~~---~d~~~~~~~y~~~~~~~~~~~i~~ 102 (123)
T 3r0a_A 26 KADLNVMKSFLNEPDRWIDTDALSKSLKLDVSTVQRSVKKLHEKEILQRSQQN---LDGGGYVYIYKIYSKNQIRNIIQK 102 (123)
T ss_dssp HHHHHHHHHHHHSTTCCEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEE---CTTSCEEEEEEECCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeeCCc---cCCCcceEEEecCCHHHHHHHHHH
Confidence 445778999997765 999999999999999999999999999999976332 232233333445677778888888
Q ss_pred HHHHHHHHHHHHHhhc
Q psy5744 109 KLDVMRKRMEMEERDA 124 (157)
Q Consensus 109 rl~~m~~~L~~~~~~~ 124 (157)
.+....+.+.+.++.-
T Consensus 103 ~~~~~~~~~~~~l~~~ 118 (123)
T 3r0a_A 103 IVQSWADRLGQELKEW 118 (123)
T ss_dssp HHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888777777766544
No 4
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=97.92 E-value=0.00028 Score=47.40 Aligned_cols=87 Identities=16% Similarity=0.168 Sum_probs=62.2
Q ss_pred CCchHHHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeeeEeeeecCCCceeEEEEEEecchhHHHHHHHH
Q psy5744 30 SIEDSLIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQTRLRMETGLDGKAQKVNYYFINYQTFVNIVKYK 109 (157)
Q Consensus 30 ~~e~ivIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~~~~e~~~~gk~~~~~yw~I~y~~~~~vik~r 109 (157)
++....|+..|..++.++-.+||+.+|++...|.++|..|.+.|+|..... ++++ ....+-...-..+...+...
T Consensus 19 ~~~~~~il~~l~~~~~~s~~ela~~l~is~~tv~~~l~~L~~~glv~~~~~----~~~r-~~~~~~t~~g~~~~~~~~~~ 93 (109)
T 1sfx_A 19 KPSDVRIYSLLLERGGMRVSEIARELDLSARFVRDRLKVLLKRGFVRREIV----EKGW-VGYIYSAEKPEKVLKEFKSS 93 (109)
T ss_dssp CHHHHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEE----ESSS-EEEEEEECCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEee----cCCc-eEEEEecCcHHHHHHHHHHH
Confidence 555678899988888899999999999999999999999999999986522 1322 22223333445566666666
Q ss_pred HHHHHHHHHHHH
Q psy5744 110 LDVMRKRMEMEE 121 (157)
Q Consensus 110 l~~m~~~L~~~~ 121 (157)
+..+.+.+.+.+
T Consensus 94 ~~~~~~~~~~~l 105 (109)
T 1sfx_A 94 ILGEIERIEKMF 105 (109)
T ss_dssp HHHHHHHHHTTS
T ss_pred HHHHHHHHHHhc
Confidence 666665555443
No 5
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=97.87 E-value=3.2e-05 Score=51.75 Aligned_cols=43 Identities=9% Similarity=0.095 Sum_probs=40.4
Q ss_pred HHHHHHHhCCCcCHHHHHHHhCCChH-HHHHHHHHHhhCcceee
Q psy5744 35 LIIDMLVRNPCMKEDDICELLKFERK-MLRARISTLKNDKIIQT 77 (157)
Q Consensus 35 vIlD~L~~~~~i~dedLa~~l~i~~k-~vRkiL~~L~~d~Lv~~ 77 (157)
.|+++|..++..+-.+||+.||++.. .||+.|+.|+++|+|..
T Consensus 15 ~IL~~Lk~~g~~ta~eiA~~Lgit~~~aVr~hL~~Le~eGlV~~ 58 (79)
T 1xmk_A 15 KICDYLFNVSDSSALNLAKNIGLTKARDINAVLIDMERQGDVYR 58 (79)
T ss_dssp HHHHHHHHTCCEEHHHHHHHHCGGGHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHcCCcCHHHHHHHcCCCcHHHHHHHHHHHHHCCCEEe
Confidence 57888889999999999999999998 99999999999999984
No 6
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=97.80 E-value=0.00032 Score=48.57 Aligned_cols=83 Identities=17% Similarity=0.213 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeeeEeeeecCCCceeEEEEEE
Q psy5744 17 LKQLSRLVVRGFYSIEDSLIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQTRLRMETGLDGKAQKVNYYF 96 (157)
Q Consensus 17 ~~~Lv~~v~R~Fy~~e~ivIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~~~~e~~~~gk~~~~~yw~ 96 (157)
.-.-+..+.+++-++--.-|+.+|. ++.++-.|||+.+|+++..|.+.|..|++.|+|..+. +|+ ..||+
T Consensus 11 ~~~~~~~~~~al~~~~r~~IL~~L~-~~~~s~~eLa~~lgis~stvs~~L~~L~~~GlV~~~~------~gr---~~~y~ 80 (108)
T 2kko_A 11 LLDQVARVGKALANGRRLQILDLLA-QGERAVEAIATATGMNLTTASANLQALKSGGLVEARR------EGT---RQYYR 80 (108)
T ss_dssp HHHHHHHHHHHHTTSTTHHHHHHHT-TCCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEEE------ETT---EEEEE
T ss_pred hHHHHHHHHHHhCCHHHHHHHHHHH-cCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEE------eCC---EEEEE
Confidence 3334555677777777778888876 5788999999999999999999999999999998752 232 35788
Q ss_pred ecchhHHHHHHHH
Q psy5744 97 INYQTFVNIVKYK 109 (157)
Q Consensus 97 I~y~~~~~vik~r 109 (157)
++.+.+..++.+=
T Consensus 81 l~~~~~~~l~~~l 93 (108)
T 2kko_A 81 IAGEDVARLFALV 93 (108)
T ss_dssp ESCHHHHHHHHHH
T ss_pred EChHHHHHHHHHH
Confidence 9987665555443
No 7
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=97.74 E-value=0.00025 Score=47.32 Aligned_cols=73 Identities=14% Similarity=0.293 Sum_probs=57.2
Q ss_pred HHHHcCCCchHHHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeeeEeeeecCCCceeEEEEEEecchhHH
Q psy5744 24 VVRGFYSIEDSLIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQTRLRMETGLDGKAQKVNYYFINYQTFV 103 (157)
Q Consensus 24 v~R~Fy~~e~ivIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~~~~e~~~~gk~~~~~yw~I~y~~~~ 103 (157)
+.+++.++...-|+..|..++.++-.|||+.+|+++..|.+.|..|.+.|+|.... +|+ ..+|.++.+.+.
T Consensus 17 ~~~~l~~~~~~~il~~l~~~~~~s~~ela~~l~is~~tvs~~l~~L~~~glv~~~~------~~r---~~~y~l~~~~~~ 87 (99)
T 3cuo_A 17 LLKAMSHPKRLLILCMLSGSPGTSAGELTRITGLSASATSQHLARMRDEGLIDSQR------DAQ---RILYSIKNEAVN 87 (99)
T ss_dssp HHHHHCSHHHHHHHHHHTTCCSEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEE------CSS---CEEEEECCHHHH
T ss_pred HHHHhCChHHHHHHHHHHhCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe------cCC---EEEEEEChHHHH
Confidence 34455666678899888777789999999999999999999999999999998651 233 457788866544
Q ss_pred HH
Q psy5744 104 NI 105 (157)
Q Consensus 104 ~v 105 (157)
.+
T Consensus 88 ~l 89 (99)
T 3cuo_A 88 AI 89 (99)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 8
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=97.72 E-value=5.6e-05 Score=50.64 Aligned_cols=45 Identities=16% Similarity=0.184 Sum_probs=40.8
Q ss_pred HHHHHHHHhCC---CcCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 34 SLIIDMLVRNP---CMKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 34 ivIlD~L~~~~---~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
--|+++|..++ .++-.+||+.||++.+.|++.|++|+++|+|...
T Consensus 13 ~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~G~I~~~ 60 (81)
T 1qbj_A 13 QRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKE 60 (81)
T ss_dssp HHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEec
Confidence 34788888888 8999999999999999999999999999999754
No 9
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=97.72 E-value=0.00023 Score=47.88 Aligned_cols=83 Identities=13% Similarity=0.219 Sum_probs=56.8
Q ss_pred CchHHHHHHHHh-CCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeeeEeeeecCCCceeEEEEEEecchhHHHHHHHH
Q psy5744 31 IEDSLIIDMLVR-NPCMKEDDICELLKFERKMLRARISTLKNDKIIQTRLRMETGLDGKAQKVNYYFINYQTFVNIVKYK 109 (157)
Q Consensus 31 ~e~ivIlD~L~~-~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~~~~e~~~~gk~~~~~yw~I~y~~~~~vik~r 109 (157)
+....++..|+. ++.++-.|||+.+|++...|+++|..|.+.|+|...... .++.+....+|.++. .+...+.-.
T Consensus 21 ~~~~~~l~~l~~~~~~~t~~ela~~l~is~~tv~~~l~~L~~~g~v~~~~~~---~~~~gr~~~~~~l~~-~~~~~~~~~ 96 (109)
T 2d1h_A 21 DTDVAVLLKMVEIEKPITSEELADIFKLSKTTVENSLKKLIELGLVVRTKTE---GKKIGRPKYYYSISS-NILEKIRND 96 (109)
T ss_dssp HHHHHHHHHHHHHCSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC----------CCEEEEECT-THHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeeccc---cCCCCCCCeeeecCH-HHHHHHHHH
Confidence 445566666665 788999999999999999999999999999999875321 232233346677775 555555555
Q ss_pred HHHHHHHH
Q psy5744 110 LDVMRKRM 117 (157)
Q Consensus 110 l~~m~~~L 117 (157)
+....+.+
T Consensus 97 ~~~~~~~~ 104 (109)
T 2d1h_A 97 LLNCAKRM 104 (109)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55544443
No 10
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=97.72 E-value=0.00017 Score=48.64 Aligned_cols=77 Identities=17% Similarity=0.372 Sum_probs=60.1
Q ss_pred HHHHHHHcCCCchHHHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeeeEeeeecCCCceeEEEEEEecch
Q psy5744 21 SRLVVRGFYSIEDSLIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQTRLRMETGLDGKAQKVNYYFINYQ 100 (157)
Q Consensus 21 v~~v~R~Fy~~e~ivIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~~~~e~~~~gk~~~~~yw~I~y~ 100 (157)
+..+.+++-++-...|+..|.. +.++=.|||+.+|+++..|.+.|..|.+.|+|..+ .+|+ ..||.++.+
T Consensus 13 ~~~~~~~l~~~~r~~Il~~L~~-~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~------~~g~---~~~y~l~~~ 82 (98)
T 3jth_A 13 AVVLLKAMANERRLQILCMLHN-QELSVGELCAKLQLSQSALSQHLAWLRRDGLVTTR------KEAQ---TVYYTLKSE 82 (98)
T ss_dssp HHHHHHHHCSHHHHHHHHHTTT-SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE------CCTT---CCEEEECCH
T ss_pred HHHHHHHcCCHHHHHHHHHHhc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEE------EeCC---EEEEEECHH
Confidence 4455677777777889988775 88999999999999999999999999999999865 1233 357888876
Q ss_pred hHHHHHH
Q psy5744 101 TFVNIVK 107 (157)
Q Consensus 101 ~~~~vik 107 (157)
.+...+.
T Consensus 83 ~~~~l~~ 89 (98)
T 3jth_A 83 EVKAMIK 89 (98)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5544443
No 11
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=97.70 E-value=0.00023 Score=53.06 Aligned_cols=94 Identities=10% Similarity=0.059 Sum_probs=75.8
Q ss_pred CCCcccccchHHHHHHHHHHHHHcCCCchHHHHHHHHhCC--CcCHHHHHHHhC-CChHHHHHHHHHHhhCcceeeeEee
Q psy5744 5 DEGYVHTEVPTSLKQLSRLVVRGFYSIEDSLIIDMLVRNP--CMKEDDICELLK-FERKMLRARISTLKNDKIIQTRLRM 81 (157)
Q Consensus 5 ~~~~~~~~ip~~~~~Lv~~v~R~Fy~~e~ivIlD~L~~~~--~i~dedLa~~l~-i~~k~vRkiL~~L~~d~Lv~~~~~~ 81 (157)
++++.-++.+..|.. .+....++-++--..|+..|+.++ ..+-++|++.++ +++.-|++.|..|.+.|||......
T Consensus 4 ~~~~~~~~~~~~f~~-~~~~~~~l~~~tR~~IL~~Ll~~p~~~~ta~eL~~~l~~lS~aTVyrhL~~L~eaGLV~~~~~~ 82 (151)
T 3u1d_A 4 MATQDRGERPNGFGD-ELERRRFVLHETRLDVLHQILAQPDGVLSVEELLYRNPDETEANLRYHVDELVDRGIVEKIPVP 82 (151)
T ss_dssp CCSCBTTBCCTTHHH-HHHHHHHHCCHHHHHHHHHHHHSTTSCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEECC
T ss_pred cccccCCCCchhHHH-HHHHHHHhcchHHHHHHHHHHcCCCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEeecC
Confidence 344556677888988 888888999998899999999864 488899999999 9999999999999999999987432
Q ss_pred eecCCCceeEEEEEEecch
Q psy5744 82 ETGLDGKAQKVNYYFINYQ 100 (157)
Q Consensus 82 e~~~~gk~~~~~yw~I~y~ 100 (157)
. +..++.....||.+.-.
T Consensus 83 ~-~~~~rGrP~k~Y~LT~~ 100 (151)
T 3u1d_A 83 R-AKSVDDPPTTFYAVTGE 100 (151)
T ss_dssp C-CTTSSSCCCEEEEECHH
T ss_pred c-CcccCCCCceEEEECHH
Confidence 2 22335677889999854
No 12
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=97.65 E-value=0.00033 Score=47.59 Aligned_cols=77 Identities=13% Similarity=0.211 Sum_probs=60.8
Q ss_pred HHHHHHHcCCCchHHHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeeeEeeeecCCCceeEEEEEEecch
Q psy5744 21 SRLVVRGFYSIEDSLIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQTRLRMETGLDGKAQKVNYYFINYQ 100 (157)
Q Consensus 21 v~~v~R~Fy~~e~ivIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~~~~e~~~~gk~~~~~yw~I~y~ 100 (157)
+..+.+++-++-...|+..|. ++.++=.|||+.+|+++..|.+.|..|.+.|||..+. +|+ ..||.++.+
T Consensus 13 ~~~~~~~l~~~~r~~Il~~L~-~~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~------~g~---~~~y~l~~~ 82 (102)
T 3pqk_A 13 VANLLKTLSHPVRLMLVCTLV-EGEFSVGELEQQIGIGQPTLSQQLGVLRESGIVETRR------NIK---QIFYRLTEA 82 (102)
T ss_dssp HHHHHHHHCSHHHHHHHHHHH-TCCBCHHHHHHHHTCCTTHHHHHHHHHHHTTSEEEEC------SSS---CCEEEECSS
T ss_pred HHHHHHHcCCHHHHHHHHHHH-hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEE------eCC---EEEEEECcH
Confidence 344567777777888999885 5779999999999999999999999999999998651 333 358889987
Q ss_pred hHHHHHH
Q psy5744 101 TFVNIVK 107 (157)
Q Consensus 101 ~~~~vik 107 (157)
.+..++.
T Consensus 83 ~~~~~~~ 89 (102)
T 3pqk_A 83 KAAQLVN 89 (102)
T ss_dssp THHHHHH
T ss_pred HHHHHHH
Confidence 5555443
No 13
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=97.64 E-value=0.00084 Score=46.06 Aligned_cols=78 Identities=12% Similarity=0.208 Sum_probs=61.0
Q ss_pred HHHHHHHcCCCchHHHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeeeEeeeecCCCceeEEEEEEecch
Q psy5744 21 SRLVVRGFYSIEDSLIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQTRLRMETGLDGKAQKVNYYFINYQ 100 (157)
Q Consensus 21 v~~v~R~Fy~~e~ivIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~~~~e~~~~gk~~~~~yw~I~y~ 100 (157)
+..+.+++-++-..-|+..|. ++.++-.|||+.+|+++..|.+.|..|++.|+|..++ . |+ ..||.++.+
T Consensus 16 ~~~~~~~l~~~~r~~IL~~L~-~~~~~~~ela~~l~is~stvs~~L~~L~~~Glv~~~~---~---gr---~~~y~l~~~ 85 (106)
T 1r1u_A 16 VTEIFKALGDYNRIRIMELLS-VSEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKR---Q---GQ---SMIYSLDDI 85 (106)
T ss_dssp HHHHHHHTCSHHHHHHHHHHH-HCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE---E---TT---EEEEEESSH
T ss_pred HHHHHHHhCCHHHHHHHHHHH-hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEE---e---CC---EEEEEEChH
Confidence 334566776666778888887 6778999999999999999999999999999998752 2 32 468889977
Q ss_pred hHHHHHHH
Q psy5744 101 TFVNIVKY 108 (157)
Q Consensus 101 ~~~~vik~ 108 (157)
.+...+..
T Consensus 86 ~~~~~~~~ 93 (106)
T 1r1u_A 86 HVATMLKQ 93 (106)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66555543
No 14
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=97.54 E-value=0.00038 Score=49.21 Aligned_cols=80 Identities=15% Similarity=0.203 Sum_probs=62.2
Q ss_pred HHHHHHHcCCCchHHHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeeeEeeeecCCCceeEEEEEEecch
Q psy5744 21 SRLVVRGFYSIEDSLIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQTRLRMETGLDGKAQKVNYYFINYQ 100 (157)
Q Consensus 21 v~~v~R~Fy~~e~ivIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~~~~e~~~~gk~~~~~yw~I~y~ 100 (157)
+..+.+++-++-..-|+..|..++.++=.+||+.+|+++..|.+.|..|++.|+|..+ .+|+ ..||.++.+
T Consensus 32 ~~~~~~al~~~~rl~IL~~L~~~~~~s~~eLa~~l~is~stvs~~L~~L~~~Glv~~~------~~gr---~~~y~l~~~ 102 (122)
T 1u2w_A 32 VSQILKAIADENRAKITYALCQDEELCVCDIANILGVTIANASHHLRTLYKQGVVNFR------KEGK---LALYSLGDE 102 (122)
T ss_dssp HHHHHHHHHSHHHHHHHHHHHHSSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC-------------CCEEEESCH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEE------EECC---EEEEEECHH
Confidence 3455666666666789998887888999999999999999999999999999999864 1232 458889987
Q ss_pred hHHHHHHHH
Q psy5744 101 TFVNIVKYK 109 (157)
Q Consensus 101 ~~~~vik~r 109 (157)
.+...+.+=
T Consensus 103 ~~~~~~~~l 111 (122)
T 1u2w_A 103 HIRQIMMIA 111 (122)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 776666553
No 15
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=97.49 E-value=0.0012 Score=45.17 Aligned_cols=73 Identities=11% Similarity=0.094 Sum_probs=57.2
Q ss_pred HHHHHHcCCCchHHHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeeeEeeeecCCCceeEEEEEEecchh
Q psy5744 22 RLVVRGFYSIEDSLIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQTRLRMETGLDGKAQKVNYYFINYQT 101 (157)
Q Consensus 22 ~~v~R~Fy~~e~ivIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~~~~e~~~~gk~~~~~yw~I~y~~ 101 (157)
..+.+++-++-...|+..| .++.++-.|||+.+|+++..|.+.|..|.+.|+|.... . |+ ..+|.+....
T Consensus 12 ~~~~~~l~~~~r~~IL~~L-~~~~~~~~ela~~l~is~~tv~~~l~~L~~~gli~~~~---~---gr---~~~y~l~~~~ 81 (114)
T 2oqg_A 12 ASVFAALSDETRWEILTEL-GRADQSASSLATRLPVSRQAIAKHLNALQACGLVESVK---V---GR---EIRYRALGAE 81 (114)
T ss_dssp HHHHHHTTCHHHHHHHHHH-HHSCBCHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEE---E---TT---EEEEEECSHH
T ss_pred HHHHHHhCChHHHHHHHHH-HcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeEEe---c---CC---EEEEEechHH
Confidence 3455666566667888888 67789999999999999999999999999999998651 1 33 5678888765
Q ss_pred HHH
Q psy5744 102 FVN 104 (157)
Q Consensus 102 ~~~ 104 (157)
+..
T Consensus 82 ~~~ 84 (114)
T 2oqg_A 82 LNK 84 (114)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 16
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=97.44 E-value=0.00023 Score=46.75 Aligned_cols=44 Identities=23% Similarity=0.256 Sum_probs=40.3
Q ss_pred HHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 35 LIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 35 vIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
.|+++|..++.++-.|||+.+|++...|++.|..|.+.|+|...
T Consensus 4 ~Il~~L~~~~~~s~~eLa~~lgvs~~tv~r~L~~L~~~GlI~~~ 47 (81)
T 2htj_A 4 EILEFLNRHNGGKTAEIAEALAVTDYQARYYLLLLEKAGMVQRS 47 (81)
T ss_dssp HHHHHHHHSCCCCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 47788887888999999999999999999999999999999854
No 17
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=97.39 E-value=0.00012 Score=49.29 Aligned_cols=44 Identities=9% Similarity=0.187 Sum_probs=39.5
Q ss_pred HHHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 34 SLIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 34 ivIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
--|+++|.+++ ++=.+||+.||++...||+.|++|+++|+|.+.
T Consensus 20 ~~IL~lL~~~g-~sa~eLAk~LgiSk~aVr~~L~~Le~eG~I~~~ 63 (82)
T 1oyi_A 20 CEAIKTIGIEG-ATAAQLTRQLNMEKREVNKALYDLQRSAMVYSS 63 (82)
T ss_dssp HHHHHHHSSST-EEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEEC
T ss_pred HHHHHHHHHcC-CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeC
Confidence 34777777677 999999999999999999999999999999874
No 18
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=97.38 E-value=0.0032 Score=43.89 Aligned_cols=93 Identities=11% Similarity=0.065 Sum_probs=59.0
Q ss_pred CCCCCCCcccccchHHHHHHHHHH---HHHcC----CCchHHHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhhCc
Q psy5744 1 MSTSDEGYVHTEVPTSLKQLSRLV---VRGFY----SIEDSLIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKNDK 73 (157)
Q Consensus 1 ~~~~~~~~~~~~ip~~~~~Lv~~v---~R~Fy----~~e~ivIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~ 73 (157)
|.+++.......+...+..+.+.+ ....+ +.....||..|..++.++-.+||+.+|++...|.+++..|.+.|
T Consensus 1 mp~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~L~~~g 80 (140)
T 2nnn_A 1 MSRTTPYRLDDQIGFILRQANQRYAALFANGIGNGLTPTQWAALVRLGETGPCPQNQLGRLTAMDAATIKGVVERLDKRG 80 (140)
T ss_dssp ------CCGGGCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHHHHHHSSBCHHHHHHHTTCCHHHHHHHHHHHHHTT
T ss_pred CCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCC
Confidence 444444444444444444433322 22222 23357788888888899999999999999999999999999999
Q ss_pred ceeeeEeeeecCCCceeEEEEEEecc
Q psy5744 74 IIQTRLRMETGLDGKAQKVNYYFINY 99 (157)
Q Consensus 74 Lv~~~~~~e~~~~gk~~~~~yw~I~y 99 (157)
+|.... . +. .....++.+.-
T Consensus 81 lv~r~~---~-~~--d~R~~~~~lT~ 100 (140)
T 2nnn_A 81 LIQRSA---D-PD--DGRRLLVSLSP 100 (140)
T ss_dssp CEEEEE---E-TT--EEEEEEEEECH
T ss_pred CEEeeC---C-CC--CCCeeeeEECH
Confidence 998641 2 21 23345666664
No 19
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=97.31 E-value=0.00022 Score=47.02 Aligned_cols=45 Identities=16% Similarity=0.184 Sum_probs=40.7
Q ss_pred HHHHHHHHhCC---CcCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 34 SLIIDMLVRNP---CMKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 34 ivIlD~L~~~~---~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
-.|+++|..++ .+|-.+||+.+|++...|++.|++|+++|+|...
T Consensus 17 ~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~~G~I~~~ 64 (77)
T 1qgp_A 17 QRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKE 64 (77)
T ss_dssp HHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEec
Confidence 45778888777 8999999999999999999999999999999754
No 20
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=97.30 E-value=0.0022 Score=42.58 Aligned_cols=70 Identities=14% Similarity=0.022 Sum_probs=55.4
Q ss_pred HHcCCCchHHHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeeeEeeeecCCCceeEEEEEEecchh
Q psy5744 26 RGFYSIEDSLIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQTRLRMETGLDGKAQKVNYYFINYQT 101 (157)
Q Consensus 26 R~Fy~~e~ivIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~~~~e~~~~gk~~~~~yw~I~y~~ 101 (157)
+++-++-...|+..|..++.++-.+||+.+|+++..|.+.|..|.+.|+|..... . .+| ...+|.+....
T Consensus 11 ~~l~~~~~~~iL~~L~~~~~~~~~ela~~l~is~~tvs~~l~~L~~~gli~~~~~--~-~~~---r~~~~~lt~~g 80 (100)
T 1ub9_A 11 HILGNPVRLGIMIFLLPRRKAPFSQIQKVLDLTPGNLDSHIRVLERNGLVKTYKV--I-ADR---PRTVVEITDFG 80 (100)
T ss_dssp HHHHSHHHHHHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEE--C-SSS---CEEEEEECHHH
T ss_pred cccCChHHHHHHHHHHhcCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEec--C-CCc---ceEEEEECHHH
Confidence 4555666788999988788899999999999999999999999999999987521 1 232 25677787553
No 21
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=97.28 E-value=0.0011 Score=46.46 Aligned_cols=76 Identities=12% Similarity=0.163 Sum_probs=60.3
Q ss_pred HHHHHHcCCCchHHHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeeeEeeeecCCCceeEEEEEEecchh
Q psy5744 22 RLVVRGFYSIEDSLIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQTRLRMETGLDGKAQKVNYYFINYQT 101 (157)
Q Consensus 22 ~~v~R~Fy~~e~ivIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~~~~e~~~~gk~~~~~yw~I~y~~ 101 (157)
..+.+++-++--.-|+..|. ++.++-.|||+.+|+++..|.+.|..|.+.|||..+. . | ...||.++.+.
T Consensus 9 ~~~~~al~~~~R~~Il~~L~-~~~~~~~eLa~~l~is~~tvs~hL~~L~~~GlV~~~~---~---g---r~~~y~l~~~~ 78 (118)
T 3f6o_A 9 NGIFQALADPTRRAVLGRLS-RGPATVSELAKPFDMALPSFMKHIHFLEDSGWIRTHK---Q---G---RVRTCAIEKEP 78 (118)
T ss_dssp HHHHHHHTSHHHHHHHHHHH-TCCEEHHHHHTTCCSCHHHHHHHHHHHHHTTSEEEEE---E---T---TEEEEEECSHH
T ss_pred HHHHHHhCCHHHHHHHHHHH-hCCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEEe---c---C---CEEEEEECHHH
Confidence 34566777777788999887 6788999999999999999999999999999999752 1 2 24678899766
Q ss_pred HHHHHH
Q psy5744 102 FVNIVK 107 (157)
Q Consensus 102 ~~~vik 107 (157)
+..+..
T Consensus 79 ~~~l~~ 84 (118)
T 3f6o_A 79 FTAVEA 84 (118)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
No 22
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=97.28 E-value=0.00099 Score=45.30 Aligned_cols=75 Identities=16% Similarity=0.320 Sum_probs=58.9
Q ss_pred HHHHHcCCCchHHHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeeeEeeeecCCCceeEEEEEEecchhH
Q psy5744 23 LVVRGFYSIEDSLIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQTRLRMETGLDGKAQKVNYYFINYQTF 102 (157)
Q Consensus 23 ~v~R~Fy~~e~ivIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~~~~e~~~~gk~~~~~yw~I~y~~~ 102 (157)
.+.+++-++-..-|+..|+.++.++=.|||+.+|+++..+.+.|..|++. +|..++ +|+ ..||.++.+.+
T Consensus 19 ~~~~aL~~~~Rl~IL~~l~~~~~~~~~ela~~l~is~stvs~hL~~L~~~-lv~~~~------~gr---~~~y~l~~~~~ 88 (99)
T 2zkz_A 19 ELLKTMAHPMRLKIVNELYKHKALNVTQIIQILKLPQSTVSQHLCKMRGK-VLKRNR------QGL---EIYYSINNPKV 88 (99)
T ss_dssp HHHHHHCSHHHHHHHHHHHHHSCEEHHHHHHHHTCCHHHHHHHHHHHBTT-TBEEEE------ETT---EEEEECCCHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHCCCcCHHHHHHHHCcCHHHHHHHHHHHHHH-hhhheE------eCc---EEEEEEChHHH
Confidence 34455556666778888887888999999999999999999999999999 998651 233 36889998776
Q ss_pred HHHHH
Q psy5744 103 VNIVK 107 (157)
Q Consensus 103 ~~vik 107 (157)
...+.
T Consensus 89 ~~~~~ 93 (99)
T 2zkz_A 89 EGIIK 93 (99)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65554
No 23
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=97.20 E-value=0.0051 Score=43.43 Aligned_cols=82 Identities=12% Similarity=0.221 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeeeEeeeecCCCceeEEEEEE
Q psy5744 17 LKQLSRLVVRGFYSIEDSLIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQTRLRMETGLDGKAQKVNYYF 96 (157)
Q Consensus 17 ~~~Lv~~v~R~Fy~~e~ivIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~~~~e~~~~gk~~~~~yw~ 96 (157)
...-+..+.+++.++...-|+..|. ++.++=.+||+.+|+++..|.+.|..|++.|+|..++ . |+ ..||.
T Consensus 32 ~~~~~~~~~kaL~~~~rl~IL~~L~-~~~~s~~ela~~lgis~stvs~~L~~Le~~Glv~~~~---~---gr---~~~y~ 101 (122)
T 1r1t_A 32 VAQSLAEFFAVLADPNRLRLLSLLA-RSELCVGDLAQAIGVSESAVSHQLRSLRNLRLVSYRK---Q---GR---HVYYQ 101 (122)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHT-TCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE---E---TT---EEEEE
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH-cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEE---e---CC---EEEEE
Confidence 3344566777887777778888876 5778999999999999999999999999999998752 2 32 35788
Q ss_pred ecchhHHHHHHH
Q psy5744 97 INYQTFVNIVKY 108 (157)
Q Consensus 97 I~y~~~~~vik~ 108 (157)
++-+.+...++.
T Consensus 102 l~~~~l~~~~~~ 113 (122)
T 1r1t_A 102 LQDHHIVALYQN 113 (122)
T ss_dssp ESSHHHHHHHHH
T ss_pred EChHHHHHHHHH
Confidence 887765555443
No 24
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=97.19 E-value=0.0062 Score=43.80 Aligned_cols=47 Identities=11% Similarity=0.174 Sum_probs=43.2
Q ss_pred chHHHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 32 EDSLIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 32 e~ivIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
....||..|..++.++-.+||+.+|++...|.+++..|.+.|+|...
T Consensus 53 ~~~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~ 99 (162)
T 3cjn_A 53 AKMRALAILSAKDGLPIGTLGIFAVVEQSTLSRALDGLQADGLVRRE 99 (162)
T ss_dssp HHHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEec
Confidence 36778888888889999999999999999999999999999999865
No 25
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=97.17 E-value=0.0011 Score=46.45 Aligned_cols=70 Identities=13% Similarity=0.204 Sum_probs=53.3
Q ss_pred HHHHcCCCchHHHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeeeEeeeecCCCceeEEEEEEecchhHH
Q psy5744 24 VVRGFYSIEDSLIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQTRLRMETGLDGKAQKVNYYFINYQTFV 103 (157)
Q Consensus 24 v~R~Fy~~e~ivIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~~~~e~~~~gk~~~~~yw~I~y~~~~ 103 (157)
+.+++.++-..-|+..|. ++.++-.|||+.+|+++..|.+.|..|++.|||..++ +|+ ..||.++.+.+.
T Consensus 14 ~~~aL~~~~r~~IL~~L~-~~~~~~~eLa~~lgis~stvs~~L~~L~~~GlV~~~~------~gr---~~~y~l~~~~~~ 83 (118)
T 2jsc_A 14 LGRALADPTRCRILVALL-DGVCYPGQLAAHLGLTRSNVSNHLSCLRGCGLVVATY------EGR---QVRYALADSHLA 83 (118)
T ss_dssp HHHHHSSHHHHHHHHHHH-TTCCSTTTHHHHHSSCHHHHHHHHHHHTTTTSEEEEE------CSS---SEEEEESSHHHH
T ss_pred HHHHhCCHHHHHHHHHHH-cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEE------ECC---EEEEEEChHHHH
Confidence 344445555677888876 5667888999999999999999999999999998652 232 357888875443
No 26
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=97.15 E-value=0.0011 Score=44.50 Aligned_cols=55 Identities=18% Similarity=0.205 Sum_probs=47.6
Q ss_pred HHHHHHcCCCchHHHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 22 RLVVRGFYSIEDSLIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 22 ~~v~R~Fy~~e~ivIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
..+.+++.++-...|+++| ++.++-.|||+.+|++...|++.|..|.+.|+|...
T Consensus 22 ~~~~~~l~~~~r~~Il~~L--~~~~~~~eLa~~l~is~~tv~~~L~~L~~~Glv~~~ 76 (96)
T 1y0u_A 22 KRYNYAVTNPVRRKILRML--DKGRSEEEIMQTLSLSKKQLDYHLKVLEAGFCIERV 76 (96)
T ss_dssp HHHHHHHSCHHHHHHHHHH--HTTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHhCCHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 3466677777777899988 567999999999999999999999999999999854
No 27
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=97.05 E-value=0.0082 Score=43.78 Aligned_cols=46 Identities=11% Similarity=0.117 Sum_probs=42.6
Q ss_pred hHHHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 33 DSLIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 33 ~ivIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
...||..|..++.++-.+||+.+|++...|.+++..|.+.|+|...
T Consensus 47 ~~~iL~~L~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~ 92 (168)
T 2nyx_A 47 QFRTLVILSNHGPINLATLATLLGVQPSATGRMVDRLVGAELIDRL 92 (168)
T ss_dssp HHHHHHHHHHHCSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEec
Confidence 5678888888889999999999999999999999999999999865
No 28
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=97.04 E-value=0.00084 Score=42.86 Aligned_cols=43 Identities=14% Similarity=0.199 Sum_probs=38.6
Q ss_pred HHHHHHHhC-CCcCHHHHHHHhCCChHHHHHHHHHHhhCcceee
Q psy5744 35 LIIDMLVRN-PCMKEDDICELLKFERKMLRARISTLKNDKIIQT 77 (157)
Q Consensus 35 vIlD~L~~~-~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~ 77 (157)
-||++|-.+ +.++-.|||+.+|++...|.++|..|+++|+|..
T Consensus 14 ~IL~~L~~~~~~~s~~eLA~~lglsr~tv~~~l~~L~~~G~I~~ 57 (67)
T 2heo_A 14 KILQVLSDDGGPVAIFQLVKKCQVPKKTLNQVLYRLKKEDRVSS 57 (67)
T ss_dssp HHHHHHHHHCSCEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEec
Confidence 588888765 5799999999999999999999999999999864
No 29
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=97.02 E-value=0.0044 Score=43.87 Aligned_cols=46 Identities=2% Similarity=0.132 Sum_probs=42.6
Q ss_pred hHHHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 33 DSLIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 33 ~ivIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
...||..|..++.++-.+||+.+|++...|.+++..|.+.|+|...
T Consensus 44 ~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~ 89 (150)
T 2rdp_A 44 QFVALQWLLEEGDLTVGELSNKMYLACSTTTDLVDRMERNGLVARV 89 (150)
T ss_dssp HHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeec
Confidence 5778888888889999999999999999999999999999999865
No 30
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=97.01 E-value=0.0052 Score=42.13 Aligned_cols=72 Identities=14% Similarity=0.156 Sum_probs=55.5
Q ss_pred HHHHHHcCCCchHHHHHHHHhCCCcCHHHHHHHh-CCChHHHHHHHHHHhhCcceeeeEeeeecCCCceeEEEEEEecch
Q psy5744 22 RLVVRGFYSIEDSLIIDMLVRNPCMKEDDICELL-KFERKMLRARISTLKNDKIIQTRLRMETGLDGKAQKVNYYFINYQ 100 (157)
Q Consensus 22 ~~v~R~Fy~~e~ivIlD~L~~~~~i~dedLa~~l-~i~~k~vRkiL~~L~~d~Lv~~~~~~e~~~~gk~~~~~yw~I~y~ 100 (157)
..+...+-+.-.+.||..|. ++.++=.|||+.+ |+++..+-+.|..|++.|||..+. .. .| ....+|++.-.
T Consensus 5 ~~~l~~l~~~~~~~IL~~L~-~~~~~~~eLa~~l~~is~~tls~~L~~Le~~GlI~r~~--~~-~d---~r~~~y~LT~~ 77 (107)
T 2hzt_A 5 EATLEVIGGKWKXVILXHLT-HGKKRTSELKRLMPNITQKMLTQQLRELEADGVINRIV--YN-QV---PPKVEYELSEY 77 (107)
T ss_dssp HHHHHHHCSTTHHHHHHHHT-TCCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEE--EC-SS---SCEEEEEECTT
T ss_pred HHHHHHHcCccHHHHHHHHH-hCCCCHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEEee--cC-CC---CCeEEEEECcc
Confidence 44566666666777888876 7889999999999 999999999999999999999652 11 23 23456677654
No 31
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=97.00 E-value=0.0015 Score=46.26 Aligned_cols=46 Identities=15% Similarity=0.195 Sum_probs=39.6
Q ss_pred hHHHHHHHHhC---CCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 33 DSLIIDMLVRN---PCMKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 33 ~ivIlD~L~~~---~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
++.||..|..+ +.++-++||+.+|+++..|+++|..|.+.|||.+.
T Consensus 11 al~iL~~la~~~~~~~~s~~ela~~~~i~~~~v~~il~~L~~~Glv~~~ 59 (129)
T 2y75_A 11 GLTIMIELAKKHGEGPTSLKSIAQTNNLSEHYLEQLVSPLRNAGLVKSI 59 (129)
T ss_dssp HHHHHHHHHHTTTSCCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHHhCCCCCcCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEec
Confidence 45566666653 57999999999999999999999999999999865
No 32
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=96.98 E-value=0.0056 Score=43.72 Aligned_cols=48 Identities=13% Similarity=0.231 Sum_probs=43.2
Q ss_pred CchHHHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 31 IEDSLIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 31 ~e~ivIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
.....||..|..++.++-.+||+.+|++...|.+++..|.+.|+|...
T Consensus 43 ~~~~~iL~~l~~~~~~t~~ela~~l~i~~~tvs~~l~~Le~~Glv~r~ 90 (155)
T 3cdh_A 43 VPEWRVLACLVDNDAMMITRLAKLSLMEQSRMTRIVDQMDARGLVTRV 90 (155)
T ss_dssp HHHHHHHHHHSSCSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHHHHHCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEec
Confidence 336778888888889999999999999999999999999999999864
No 33
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=96.98 E-value=0.01 Score=43.06 Aligned_cols=109 Identities=10% Similarity=-0.037 Sum_probs=68.8
Q ss_pred HHcCCCchHHHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeeeEeeeecCCCceeEEEEEEecchhHHHH
Q psy5744 26 RGFYSIEDSLIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQTRLRMETGLDGKAQKVNYYFINYQTFVNI 105 (157)
Q Consensus 26 R~Fy~~e~ivIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~~~~e~~~~gk~~~~~yw~I~y~~~~~v 105 (157)
..+-+.-.+.||..|. ++.++=.||++.+|+++..|.+.|..|+++|||..+. . ++ .. ..+|++.-.. ..
T Consensus 19 ~~l~~~w~l~IL~~L~-~g~~~~~eLa~~lgis~~tls~~L~~Le~~GlI~r~~---~-~~--d~-~~~y~LT~~G--~~ 88 (146)
T 2f2e_A 19 DVIGDGWSMLIVRDAF-EGLTRFGEFQKSLGLAKNILAARLRNLVEHGVMVAVP---A-ES--GS-HQEYRLTDKG--RA 88 (146)
T ss_dssp HHHCSSSHHHHHHHHH-TTCCSHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEE---C-SS--SS-CEEEEECHHH--HT
T ss_pred HHhCCchHHHHHHHHH-hCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEEe---c-CC--CC-eEEEEECchH--HH
Confidence 3334444567777775 7889999999999999999999999999999999652 1 22 12 4567777532 11
Q ss_pred HHHHHHHHHHHHHHHHhhc-C-------------CCCeeecCCCCCccchhhh
Q psy5744 106 VKYKLDVMRKRMEMEERDA-T-------------SRSSFKCPRCLKTFTDLEP 144 (157)
Q Consensus 106 ik~rl~~m~~~L~~~~~~~-~-------------~~~~Y~Cp~C~~~Ys~lda 144 (157)
+.-.+..+.+-.++-+... . -...+.|..||..-+..|+
T Consensus 89 l~~~l~~l~~w~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~ 141 (146)
T 2f2e_A 89 LFPLLVAIRQWGEDYFFAPDESHVRLVERDSGQPVPRLQVRAGDGSPLAAEDT 141 (146)
T ss_dssp THHHHHHHHHHHHHHSSCTTCCCCEEEETTTCCBCCCCCCBCTTSCBCCGGGE
T ss_pred HHHHHHHHHHHHHHhhccccCCcceeeeCCCCCCCCceEEECCCcCCCCHHHe
Confidence 2223334433333332211 1 1135677777777666554
No 34
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=96.96 E-value=0.0041 Score=46.28 Aligned_cols=83 Identities=17% Similarity=0.202 Sum_probs=64.8
Q ss_pred HHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeeeEeeeecCCCceeEEEEEEecchhHHHHHHHHHHHHH
Q psy5744 35 LIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQTRLRMETGLDGKAQKVNYYFINYQTFVNIVKYKLDVMR 114 (157)
Q Consensus 35 vIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~~~~e~~~~gk~~~~~yw~I~y~~~~~vik~rl~~m~ 114 (157)
-|++.|. +|+++=.+||+.||++--+++=+|+.|+.+|+|....+ ....||+++-. +... ++.-+.
T Consensus 15 ~ILE~Lk-~G~~~t~~Iak~LGlShg~aq~~Ly~LeREG~V~~Vk~---------GK~ayw~L~~s---~y~~-kV~dil 80 (165)
T 2vxz_A 15 DILALLA-DGCKTTSLIQQRLGLSHGRAKALIYVLEKEGRVTRVAF---------GNVALVCLSMD---QYRQ-LVDGMI 80 (165)
T ss_dssp HHHHHHT-TCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCEEEEE---------TTEEEEESCHH---HHHH-HHHHHH
T ss_pred HHHHHHH-hCCccHHHHHHHhCCcHHHHHHHHHHHHhcCceEEEEE---------ccEEEEEecHH---HHHH-HHHHHH
Confidence 4777777 99999999999999999999999999999999986522 23679999854 3333 777787
Q ss_pred HHHHHHHhhcCCCCeeecC
Q psy5744 115 KRMEMEERDATSRSSFKCP 133 (157)
Q Consensus 115 ~~L~~~~~~~~~~~~Y~Cp 133 (157)
+.+..-++. .+..|+-|
T Consensus 81 rel~~~l~s--~gvk~i~p 97 (165)
T 2vxz_A 81 REVERLVTT--NKLKFISP 97 (165)
T ss_dssp HHHHHHHHH--TTCSEECH
T ss_pred HHHHHHHHH--cCCeeeCc
Confidence 777777755 45556554
No 35
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=96.95 E-value=0.019 Score=39.54 Aligned_cols=81 Identities=11% Similarity=0.179 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeeeEeeeecCCCceeEEEEE
Q psy5744 16 SLKQLSRLVVRGFYSIEDSLIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQTRLRMETGLDGKAQKVNYY 95 (157)
Q Consensus 16 ~~~~Lv~~v~R~Fy~~e~ivIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~~~~e~~~~gk~~~~~yw 95 (157)
..-.-+..+.+++.++....|+..|.. +.++-.+||+.+|+++.-|.+.|..|++.|+|...+ . |+ ..+|
T Consensus 17 ~~~~~~~~~~~~l~~~~~~~il~~L~~-~~~s~~ela~~l~is~stvsr~l~~Le~~Glv~~~~---~---~r---~~~~ 86 (119)
T 2lkp_A 17 QAAAQVASTLQALATPSRLMILTQLRN-GPLPVTDLAEAIGMEQSAVSHQLRVLRNLGLVVGDR---A---GR---SIVY 86 (119)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHH-CCCCHHHHHHHHSSCHHHHHHHHHHHHHHCSEEEEE---E---TT---EEEE
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHH-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe---c---CC---EEEE
Confidence 344455667788888888889998887 789999999999999999999999999999998652 2 22 3467
Q ss_pred EecchhHHHHH
Q psy5744 96 FINYQTFVNIV 106 (157)
Q Consensus 96 ~I~y~~~~~vi 106 (157)
.+.-..+...+
T Consensus 87 ~~~~~~~~~~~ 97 (119)
T 2lkp_A 87 SLYDTHVAQLL 97 (119)
T ss_dssp EESCHHHHHHH
T ss_pred EEchHHHHHHH
Confidence 77755444433
No 36
>2xub_A DNA-directed RNA polymerase III subunit RPC3; transcription, winged helix; 2.80A {Homo sapiens} PDB: 2xv4_S
Probab=96.92 E-value=0.0014 Score=57.40 Aligned_cols=78 Identities=13% Similarity=0.091 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeeeEeeeecCCCceeEEEEEE
Q psy5744 17 LKQLSRLVVRGFYSIEDSLIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQTRLRMETGLDGKAQKVNYYF 96 (157)
Q Consensus 17 ~~~Lv~~v~R~Fy~~e~ivIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~~~~e~~~~gk~~~~~yw~ 96 (157)
-.+|.-.++..-||+-.-.|.+.|+++|..+=.+|+..+++++++||..|..|-++++|.+. .+ ++| .+||.
T Consensus 5 ~~~L~~~li~~~FG~~~~~V~~~Ll~~G~ltL~~I~~~t~L~~~~Vk~~L~vLIQh~lV~~~--~~--~~~----~~~Y~ 76 (534)
T 2xub_A 5 EIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLVQHNLVSYQ--VH--KRG----VVEYE 76 (534)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE--EE--TTT----EEEEE
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHhcCCcCHHHHHHHhCCCHHHHHHHHHHHHhcCCeeEE--eC--CCC----cEEEE
Confidence 45788899999999999999999999999999999999999999999999999999999886 22 233 48888
Q ss_pred ecchhH
Q psy5744 97 INYQTF 102 (157)
Q Consensus 97 I~y~~~ 102 (157)
+|.+.+
T Consensus 77 ~~~~~i 82 (534)
T 2xub_A 77 AQCSRV 82 (534)
T ss_dssp ECHHHH
T ss_pred EChhhH
Confidence 885443
No 37
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=96.90 E-value=0.0018 Score=42.89 Aligned_cols=44 Identities=18% Similarity=0.189 Sum_probs=41.0
Q ss_pred HHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 35 LIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 35 vIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
.|+++|-.++.++=.|||+.++++.-.||+-|..|.+.|+|...
T Consensus 6 ~Il~~L~~~g~vsv~eLa~~l~VS~~TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 6 QVRDLLALRGRMEAAQISQTLNTPQPMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp HHHHHHHHSCSBCHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 47888888999999999999999999999999999999999765
No 38
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=96.89 E-value=0.0031 Score=46.37 Aligned_cols=72 Identities=13% Similarity=0.226 Sum_probs=58.2
Q ss_pred HHHHHcCCCchHHHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeeeEeeeecCCCceeEEEEEEecchhH
Q psy5744 23 LVVRGFYSIEDSLIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQTRLRMETGLDGKAQKVNYYFINYQTF 102 (157)
Q Consensus 23 ~v~R~Fy~~e~ivIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~~~~e~~~~gk~~~~~yw~I~y~~~ 102 (157)
.+.+++-++--.-||..|. ++.++=.+||+.+|+++..|.+.|..|++.|||..++ +|+. .||.++.+.+
T Consensus 50 ~~l~aL~~p~R~~IL~~L~-~~~~t~~eLa~~lgls~stvs~hL~~L~~aGlV~~~~------~Gr~---~~y~lt~~~~ 119 (151)
T 3f6v_A 50 DQLEVAAEPTRRRLVQLLT-SGEQTVNNLAAHFPASRSAISQHLRVLTEAGLVTPRK------DGRF---RYYRLDPQGL 119 (151)
T ss_dssp CHHHHHTSHHHHHHHHHGG-GCCEEHHHHHTTSSSCHHHHHHHHHHHHHTTSEEEEE------ETTE---EEEEECHHHH
T ss_pred HHHHHhCCHHHHHHHHHHH-hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe------cCCE---EEEEEChHHH
Confidence 4567777777788998887 6789999999999999999999999999999999752 2332 7888986544
Q ss_pred HH
Q psy5744 103 VN 104 (157)
Q Consensus 103 ~~ 104 (157)
..
T Consensus 120 ~~ 121 (151)
T 3f6v_A 120 AQ 121 (151)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 39
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=96.88 E-value=0.02 Score=39.84 Aligned_cols=48 Identities=15% Similarity=0.192 Sum_probs=43.6
Q ss_pred CchHHHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 31 IEDSLIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 31 ~e~ivIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
.....||..|..++.++-.+||+.+|++...|.+++..|.+.|+|...
T Consensus 36 ~~~~~iL~~l~~~~~~t~~ela~~l~~s~~~vs~~l~~Le~~glv~r~ 83 (142)
T 2fbi_A 36 EQQWRVIRILRQQGEMESYQLANQACILRPSMTGVLARLERDGIVRRW 83 (142)
T ss_dssp HHHHHHHHHHHHHCSEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEee
Confidence 446778888888888999999999999999999999999999999865
No 40
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=96.87 E-value=0.012 Score=41.99 Aligned_cols=71 Identities=13% Similarity=0.072 Sum_probs=53.0
Q ss_pred cccccchHHHHHHHHHHHHHcCC------------CchHHHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcce
Q psy5744 8 YVHTEVPTSLKQLSRLVVRGFYS------------IEDSLIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKNDKII 75 (157)
Q Consensus 8 ~~~~~ip~~~~~Lv~~v~R~Fy~------------~e~ivIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv 75 (157)
...+..+..+-.++..+.+.+.. .....||..|..++.++-.+||+.+|++...|.+++..|.+.|+|
T Consensus 9 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lt~~~~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli 88 (154)
T 2eth_A 9 HHHHMDALEIFKTLFSLVMRFSSYLPSNEEISDMKTTELYAFLYVALFGPKKMKEIAEFLSTTKSNVTNVVDSLEKRGLV 88 (154)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTTSCCCHHHHHSBHHHHHHHHHHHHHCCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSE
T ss_pred hhhcccHHHHHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCE
Confidence 34444445555555555555433 125678888888889999999999999999999999999999999
Q ss_pred eee
Q psy5744 76 QTR 78 (157)
Q Consensus 76 ~~~ 78 (157)
...
T Consensus 89 ~r~ 91 (154)
T 2eth_A 89 VRE 91 (154)
T ss_dssp EEE
T ss_pred Eee
Confidence 865
No 41
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=96.87 E-value=0.0019 Score=43.76 Aligned_cols=45 Identities=13% Similarity=0.152 Sum_probs=41.9
Q ss_pred HHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeeeE
Q psy5744 35 LIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQTRL 79 (157)
Q Consensus 35 vIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~~ 79 (157)
.|+++|-.++.++=.|||+.+|++.--||+-|..|.+.|+|...+
T Consensus 6 ~Il~~L~~~g~vsv~eLA~~l~VS~~TIRrDL~~Le~~G~l~R~~ 50 (87)
T 2k02_A 6 EVRDMLALQGRMEAKQLSARLQTPQPLIDAMLERMEAMGKVVRIS 50 (87)
T ss_dssp HHHHHHHHSCSEEHHHHHHHTTCCHHHHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 478888889999999999999999999999999999999999764
No 42
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=96.85 E-value=0.003 Score=42.88 Aligned_cols=49 Identities=12% Similarity=0.206 Sum_probs=44.5
Q ss_pred CCchHHHHHHHHh--CCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 30 SIEDSLIIDMLVR--NPCMKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 30 ~~e~ivIlD~L~~--~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
.++...|+..|-. +..++-.|||..++++...|.++|..|++.|||+..
T Consensus 19 t~~q~~Vl~~I~~~g~~gi~qkeLa~~~~l~~~tvt~iLk~LE~kglIkr~ 69 (91)
T 2dk5_A 19 DNQEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLESKKLIKAV 69 (91)
T ss_dssp CSSHHHHHHHHHHHCTTCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHHHHHHcCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe
Confidence 3567889999987 558999999999999999999999999999999976
No 43
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=96.84 E-value=0.015 Score=40.65 Aligned_cols=48 Identities=10% Similarity=0.155 Sum_probs=43.3
Q ss_pred CchHHHHHHH-HhCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 31 IEDSLIIDML-VRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 31 ~e~ivIlD~L-~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
+....||..| ..++.++-.+||+.+|+++..|.+++..|.+.|+|...
T Consensus 37 ~~~~~iL~~l~~~~~~~t~~~la~~l~~s~~~vs~~l~~L~~~glv~r~ 85 (146)
T 2fbh_A 37 QARWLVLLHLARHRDSPTQRELAQSVGVEGPTLARLLDGLESQGLVRRL 85 (146)
T ss_dssp TTHHHHHHHHHHCSSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCeeec
Confidence 4467888888 56789999999999999999999999999999999865
No 44
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=96.79 E-value=0.0022 Score=45.32 Aligned_cols=48 Identities=8% Similarity=0.270 Sum_probs=40.4
Q ss_pred CchHHHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 31 IEDSLIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 31 ~e~ivIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
+....||..|..++.++-.+||+.+|+++..+.+++..|.+.|+|...
T Consensus 37 ~~~~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~ 84 (142)
T 3ech_A 37 PPDVHVLKLIDEQRGLNLQDLGRQMCRDKALITRKIRELEGRNLVRRE 84 (142)
T ss_dssp HHHHHHHHHHHHTTTCCHHHHHHHHC---CHHHHHHHHHHHTTSEEC-
T ss_pred HHHHHHHHHHHhCCCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCEeec
Confidence 346789989888899999999999999999999999999999999865
No 45
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=96.78 E-value=0.0056 Score=44.39 Aligned_cols=63 Identities=5% Similarity=-0.075 Sum_probs=51.2
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHh-----CCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeeeEee
Q psy5744 19 QLSRLVVRGFYSIEDSLIIDMLVR-----NPCMKEDDICELLKFERKMLRARISTLKNDKIIQTRLRM 81 (157)
Q Consensus 19 ~Lv~~v~R~Fy~~e~ivIlD~L~~-----~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~~~~ 81 (157)
-|++......-++...+++=.|.. +...+-++||+.+|+++++|.++|..|.+.|++....+.
T Consensus 20 ~LL~~y~~LgLs~~E~~lLl~L~~~~~~g~~~ps~~~LA~~~~~s~~~v~~~L~~L~~KGlI~i~~~~ 87 (135)
T 2v79_A 20 LLLTHYKQLGLNETELILLLKIKMHLEKGSYFPTPNQLQEGMSISVEECTNRLRMFIQKGFLFIEECE 87 (135)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTTTCCSCCHHHHHTTSSSCHHHHHHHHHHHHHHTSCEEEEEE
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeEe
Confidence 356666677777777666666665 466899999999999999999999999999999987554
No 46
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=96.76 E-value=0.0085 Score=42.19 Aligned_cols=46 Identities=11% Similarity=0.208 Sum_probs=42.5
Q ss_pred hHHHHHHHHh-CCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 33 DSLIIDMLVR-NPCMKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 33 ~ivIlD~L~~-~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
...||..|.. ++.++-.+||+.+|++...|.+++..|.+.|+|...
T Consensus 37 ~~~iL~~l~~~~~~~~~~~la~~l~i~~~~vs~~l~~Le~~glv~r~ 83 (147)
T 2hr3_A 37 QLVVLGAIDRLGGDVTPSELAAAERMRSSNLAALLRELERGGLIVRH 83 (147)
T ss_dssp HHHHHHHHHHTTSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCEeeC
Confidence 4678888888 889999999999999999999999999999999865
No 47
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=96.74 E-value=0.013 Score=42.27 Aligned_cols=48 Identities=10% Similarity=0.165 Sum_probs=43.9
Q ss_pred CchHHHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 31 IEDSLIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 31 ~e~ivIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
.....||..|..++.++-.+||+.+|+++..|.+++..|.+.|+|...
T Consensus 46 ~~q~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~ 93 (162)
T 3k0l_A 46 LPQFTALSVLAAKPNLSNAKLAERSFIKPQSANKILQDLLANGWIEKA 93 (162)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHTSCGGGHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCcCeEec
Confidence 336788888888899999999999999999999999999999999965
No 48
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=96.74 E-value=0.0072 Score=42.41 Aligned_cols=48 Identities=8% Similarity=0.209 Sum_probs=43.5
Q ss_pred CchHHHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 31 IEDSLIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 31 ~e~ivIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
+....||..|..++.++-.+||+.+|+++..|.+++..|.+.|+|...
T Consensus 37 ~~~~~iL~~l~~~~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~ 84 (142)
T 2bv6_A 37 YPQFLVLTILWDESPVNVKKVVTELALDTGTVSPLLKRMEQVDLIKRE 84 (142)
T ss_dssp HHHHHHHHHHHHSSEEEHHHHHHHTTCCTTTHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEEee
Confidence 446778888888888999999999999999999999999999999865
No 49
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=96.71 E-value=0.021 Score=39.97 Aligned_cols=47 Identities=9% Similarity=0.062 Sum_probs=42.5
Q ss_pred CchHHHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 31 IEDSLIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 31 ~e~ivIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
.....||..|. ++.++-.+||+.+|+++..|.+++..|.+.|+|...
T Consensus 37 ~~~~~iL~~l~-~~~~~~~ela~~l~~s~~tvs~~l~~Le~~glv~r~ 83 (146)
T 2gxg_A 37 YLDFLVLRATS-DGPKTMAYLANRYFVTQSAITASVDKLEEMGLVVRV 83 (146)
T ss_dssp HHHHHHHHHHT-TSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHh-cCCcCHHHHHHHhCCCchhHHHHHHHHHHCCCEEee
Confidence 33667888888 889999999999999999999999999999999865
No 50
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=96.68 E-value=0.069 Score=36.83 Aligned_cols=62 Identities=10% Similarity=0.236 Sum_probs=49.7
Q ss_pred chHHHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeeeEeeeecCCCceeEEEEEEecc
Q psy5744 32 EDSLIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQTRLRMETGLDGKAQKVNYYFINY 99 (157)
Q Consensus 32 e~ivIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~~~~e~~~~gk~~~~~yw~I~y 99 (157)
....||..|..++.++-.+||+.+|+++..|.+++..|.+.|+|.... ...| ....++++.-
T Consensus 30 ~~~~iL~~l~~~~~~~~~ela~~l~~s~~tvs~~l~~L~~~glv~~~~---~~~d---~R~~~~~lT~ 91 (138)
T 3bpv_A 30 AQVACLLRIHREPGIKQDELATFFHVDKGTIARTLRRLEESGFIEREQ---DPEN---RRRYILEVTR 91 (138)
T ss_dssp HHHHHHHHHHHSTTCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE---ETTE---EEEEEEEECH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeec---CCCC---ceeEEeeECH
Confidence 367788888888999999999999999999999999999999998652 2122 3345566664
No 51
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=96.66 E-value=0.0025 Score=42.05 Aligned_cols=41 Identities=15% Similarity=0.217 Sum_probs=35.1
Q ss_pred HHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 38 DMLVRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 38 D~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
+.|..++..|.-+||.+||++.+.|+++|+.|.+.|.|...
T Consensus 22 ~~L~~~~~~Ta~~IAkkLg~sK~~vNr~LY~L~kkG~V~~~ 62 (75)
T 1sfu_A 22 LSLNTNDYTTAISLSNRLKINKKKINQQLYKLQKEDTVKMV 62 (75)
T ss_dssp HTSCTTCEECHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HhCCCCcchHHHHHHHHHCCCHHHHHHHHHHHHHCCCEecC
Confidence 33333455999999999999999999999999999999865
No 52
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=96.65 E-value=0.023 Score=39.40 Aligned_cols=46 Identities=9% Similarity=0.149 Sum_probs=42.5
Q ss_pred hHHHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 33 DSLIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 33 ~ivIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
...||..|..++.++-.+||+.+|+++..+.+++..|.+.|+|...
T Consensus 36 ~~~iL~~l~~~~~~~~~~la~~l~~~~~tvs~~l~~L~~~gli~r~ 81 (138)
T 1jgs_A 36 QFKVLCSIRCAACITPVELKKVLSVDLGALTRMLDRLVCKGWVERL 81 (138)
T ss_dssp HHHHHHHHHHHSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHCCChHHHHHHHHHHHHCCCEEec
Confidence 5678888888888999999999999999999999999999999865
No 53
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=96.64 E-value=0.0035 Score=41.58 Aligned_cols=44 Identities=11% Similarity=0.180 Sum_probs=39.4
Q ss_pred HHHHHHHh-CCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 35 LIIDMLVR-NPCMKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 35 vIlD~L~~-~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
.||++|-. .+.++--|||+.+|++.|+|.++|..|+.++.|.+-
T Consensus 23 kVLe~LkeaG~PlkageIae~~GvdKKeVdKaik~LKkEgkI~SP 67 (80)
T 2lnb_A 23 RILQVLTEAGSPVKLAQLVKECQAPKRELNQVLYRMKKELKVSLT 67 (80)
T ss_dssp HHHHHHHHHTSCEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHcCCccCC
Confidence 57888876 578999999999999999999999999999998764
No 54
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=96.64 E-value=0.0042 Score=44.32 Aligned_cols=64 Identities=8% Similarity=0.102 Sum_probs=44.8
Q ss_pred CchHHHHHHHHh-----CCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeeeEeeeecCCCceeEEEEEEec
Q psy5744 31 IEDSLIIDMLVR-----NPCMKEDDICELLKFERKMLRARISTLKNDKIIQTRLRMETGLDGKAQKVNYYFIN 98 (157)
Q Consensus 31 ~e~ivIlD~L~~-----~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~~~~e~~~~gk~~~~~yw~I~ 98 (157)
+...+|+-.|.+ +...+-++||+.+|++...|.++|..|.+.|+|......+. +|+ ...+|.++
T Consensus 32 ~~e~~vll~L~~~~~~~~~~ps~~~LA~~l~~s~~~V~~~l~~Le~kGlI~~~~~~~~--~g~--~~~~Ydl~ 100 (128)
T 2vn2_A 32 EGELVLLLHMQSFFEEGVLFPTPAELAERMTVSAAECMEMVRRLLQKGMIAIEEHTDE--QGI--RNEKYTLE 100 (128)
T ss_dssp HHHHHHHHHHHHHHTTTCSSCCHHHHHHTSSSCHHHHHHHHHHHHHTTSSEECC--------------CEECH
T ss_pred HHHHHHHHHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeEECC--CCc--EEEEEehH
Confidence 445667777775 24589999999999999999999999999999998644322 343 23456666
No 55
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=96.64 E-value=0.0025 Score=45.29 Aligned_cols=47 Identities=15% Similarity=0.305 Sum_probs=43.3
Q ss_pred chHHHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 32 EDSLIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 32 e~ivIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
....||..|..++.++-.+||+.+|++...+.+++..|.+.|+|...
T Consensus 41 ~~~~iL~~l~~~~~~t~~ela~~l~~~~~~vs~~l~~Le~~Glv~r~ 87 (152)
T 3bj6_A 41 GQRAILEGLSLTPGATAPQLGAALQMKRQYISRILQEVQRAGLIERR 87 (152)
T ss_dssp HHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeeec
Confidence 36778888888889999999999999999999999999999999975
No 56
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=96.61 E-value=0.0026 Score=42.06 Aligned_cols=45 Identities=16% Similarity=0.247 Sum_probs=39.9
Q ss_pred HHHHHHHHhC------CCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 34 SLIIDMLVRN------PCMKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 34 ivIlD~L~~~------~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
--|+++|-.+ +.+|=.|||+.+|++...||+-|..|++.|+|...
T Consensus 7 ~~IL~~I~~~i~~~~g~~psv~EIa~~lgvS~~TVrr~L~~Le~kG~I~R~ 57 (77)
T 2jt1_A 7 TKIISIVQERQNMDDGAPVKTRDIADAAGLSIYQVRLYLEQLHDVGVLEKV 57 (77)
T ss_dssp HHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHhhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEec
Confidence 4578887765 78999999999999999999999999999999854
No 57
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=96.58 E-value=0.013 Score=40.05 Aligned_cols=71 Identities=14% Similarity=0.068 Sum_probs=53.3
Q ss_pred HHHHHcCCCchHHHHHHHHhCCCcCHHHHHHHh-CCChHHHHHHHHHHhhCcceeeeEeeeecCCCceeEEEEEEecch
Q psy5744 23 LVVRGFYSIEDSLIIDMLVRNPCMKEDDICELL-KFERKMLRARISTLKNDKIIQTRLRMETGLDGKAQKVNYYFINYQ 100 (157)
Q Consensus 23 ~v~R~Fy~~e~ivIlD~L~~~~~i~dedLa~~l-~i~~k~vRkiL~~L~~d~Lv~~~~~~e~~~~gk~~~~~yw~I~y~ 100 (157)
.+...+-+.-.+.||..|. ++.++=.|||+.+ |+++..|.+.|..|+++|||... ... .| ....+|++.-.
T Consensus 17 ~~l~~l~~~~~~~IL~~L~-~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~--~~~-~d---~r~~~y~LT~~ 88 (107)
T 2fsw_A 17 KSMQIFAGKWTLLIIFQIN-RRIIRYGELKRAIPGISEKMLIDELKFLCGKGLIKKK--QYP-EV---PPRVEYSLTPL 88 (107)
T ss_dssp HHHHHHTSSSHHHHHHHHT-TSCEEHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEE--EEC-SS---SCEEEEEECHH
T ss_pred HHHHHHcCccHHHHHHHHH-hCCcCHHHHHHHcccCCHHHHHHHHHHHHHCCCEEEe--ecC-CC---CCeeEEEECcc
Confidence 3344555666677888876 7889999999999 59999999999999999999864 211 23 33567777754
No 58
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=96.54 E-value=0.019 Score=39.87 Aligned_cols=48 Identities=15% Similarity=0.289 Sum_probs=43.6
Q ss_pred CchHHHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 31 IEDSLIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 31 ~e~ivIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
.....||..|..++.++-.+||+.+|+++..|.+++..|.+.|+|...
T Consensus 31 ~~~~~iL~~l~~~~~~~~~ela~~l~is~~~vs~~l~~L~~~gli~~~ 78 (142)
T 3bdd_A 31 LTRYSILQTLLKDAPLHQLALQERLQIDRAAVTRHLKLLEESGYIIRK 78 (142)
T ss_dssp HHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEec
Confidence 346778888888889999999999999999999999999999999865
No 59
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=96.53 E-value=0.029 Score=39.15 Aligned_cols=48 Identities=10% Similarity=0.137 Sum_probs=43.5
Q ss_pred CchHHHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 31 IEDSLIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 31 ~e~ivIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
+....||..|..++.++-.+||+.+|+++..+.+++..|.+.|+|...
T Consensus 33 ~~~~~iL~~l~~~~~~~~~~la~~l~~s~~tvs~~l~~L~~~glv~r~ 80 (145)
T 2a61_A 33 PAQFDILQKIYFEGPKRPGELSVLLGVAKSTVTGLVKRLEADGYLTRT 80 (145)
T ss_dssp HHHHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeec
Confidence 336778888888889999999999999999999999999999999865
No 60
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=96.51 E-value=0.0097 Score=41.82 Aligned_cols=45 Identities=13% Similarity=0.333 Sum_probs=41.4
Q ss_pred hHHHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 33 DSLIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 33 ~ivIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
...||..|..++ ++-.+||+.+|+++.-|.+++..|.+.|+|...
T Consensus 40 ~~~iL~~l~~~~-~t~~eLa~~l~~s~~tvs~~l~~L~~~Glv~r~ 84 (146)
T 3tgn_A 40 QEHILMLLSEES-LTNSELARRLNVSQAAVTKAIKSLVKEGMLETS 84 (146)
T ss_dssp HHHHHHHHTTCC-CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC-
T ss_pred HHHHHHHHHhCC-CCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEec
Confidence 577898988888 999999999999999999999999999999865
No 61
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=96.44 E-value=0.0043 Score=45.15 Aligned_cols=46 Identities=17% Similarity=0.294 Sum_probs=38.3
Q ss_pred hHHHHHHHHhC---CCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 33 DSLIIDMLVRN---PCMKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 33 ~ivIlD~L~~~---~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
++-+|-.|..+ +.++-++||+.+|++++.|++++..|.+.|||.+.
T Consensus 13 Al~~L~~La~~~~~~~~s~~~IA~~~~i~~~~l~kil~~L~~aGlv~s~ 61 (143)
T 3t8r_A 13 GLTLMISLAKKEGQGCISLKSIAEENNLSDLYLEQLVGPLRNAGLIRSV 61 (143)
T ss_dssp HHHHHHHHHTTTTSCCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHHhCCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCEEEec
Confidence 34455555543 36999999999999999999999999999999876
No 62
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=96.43 E-value=0.0064 Score=43.27 Aligned_cols=48 Identities=21% Similarity=0.339 Sum_probs=43.1
Q ss_pred CCchHHHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 30 SIEDSLIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 30 ~~e~ivIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
.+....||..| .++.++-.+||+.+|+++..|.+++..|.+.|+|..+
T Consensus 37 t~~q~~iL~~l-~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~ 84 (151)
T 3kp7_A 37 SAEQSHVLNML-SIEALTVGQITEKQGVNKAAVSRRVKKLLNAELVKLE 84 (151)
T ss_dssp CHHHHHHHHHH-HHSCBCHHHHHHHHCSCSSHHHHHHHHHHHTTSEEC-
T ss_pred CHHHHHHHHHH-HcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEee
Confidence 34467788898 8899999999999999999999999999999999975
No 63
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=96.43 E-value=0.014 Score=41.58 Aligned_cols=36 Identities=8% Similarity=0.134 Sum_probs=32.7
Q ss_pred CCCc-CHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 43 NPCM-KEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 43 ~~~i-~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
...+ ++.+||+.+|++..-||+++..|..+|||..+
T Consensus 35 G~~LPser~La~~~gVSr~tVReAl~~L~~eGlv~~~ 71 (134)
T 4ham_A 35 GEKILSIREFASRIGVNPNTVSKAYQELERQEVIITV 71 (134)
T ss_dssp TCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCccHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEE
Confidence 3456 79999999999999999999999999999876
No 64
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=96.42 E-value=0.014 Score=40.53 Aligned_cols=35 Identities=14% Similarity=0.235 Sum_probs=31.9
Q ss_pred CCc-CHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 44 PCM-KEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 44 ~~i-~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
..+ ++.+||+.+|++..-||+++..|.++|+|...
T Consensus 31 ~~lPs~~~La~~~~vSr~tvr~al~~L~~~Gli~~~ 66 (113)
T 3tqn_A 31 EMIPSIRKISTEYQINPLTVSKAYQSLLDDNVIEKR 66 (113)
T ss_dssp CEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 345 89999999999999999999999999999754
No 65
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=96.42 E-value=0.022 Score=41.05 Aligned_cols=72 Identities=8% Similarity=0.122 Sum_probs=55.3
Q ss_pred HHHHHHHcCCCchHHHHHHHHhCCCcCHHHHHHHh-CCChHHHHHHHHHHhhCcceeeeEeeeecCCCceeEEEEEEecc
Q psy5744 21 SRLVVRGFYSIEDSLIIDMLVRNPCMKEDDICELL-KFERKMLRARISTLKNDKIIQTRLRMETGLDGKAQKVNYYFINY 99 (157)
Q Consensus 21 v~~v~R~Fy~~e~ivIlD~L~~~~~i~dedLa~~l-~i~~k~vRkiL~~L~~d~Lv~~~~~~e~~~~gk~~~~~yw~I~y 99 (157)
+..+...+-+.-.+.||-.|. ++.++=.||++.+ |++++.+.+.|..|+++|||.... ...+ ....+|.+--
T Consensus 16 i~~~l~~lg~kW~l~IL~~L~-~g~~rf~eL~~~l~gIs~~~Ls~~L~~Le~~GLV~R~~---~~~d---~r~v~y~LT~ 88 (131)
T 4a5n_A 16 VEFTLDVIGGKWKGILFYHMI-DGKKRFNEFRRICPSITQRMLTLQLRELEADGIVHREV---YHQV---PPKVEYSLTE 88 (131)
T ss_dssp HHHHHHHHCSSSHHHHHHHHT-TSCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEE---ECSS---SCEEEEEECT
T ss_pred HHHHHHHHcCcCHHHHHHHHh-cCCcCHHHHHHHhcccCHHHHHHHHHHHHHCCCEEEEe---cCCC---CCeEEEEECH
Confidence 455555666666788888876 7899999999999 999999999999999999998652 2112 2355667664
No 66
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=96.40 E-value=0.0071 Score=45.00 Aligned_cols=47 Identities=17% Similarity=0.168 Sum_probs=38.4
Q ss_pred hHHHHHHHHh---CCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeeeE
Q psy5744 33 DSLIIDMLVR---NPCMKEDDICELLKFERKMLRARISTLKNDKIIQTRL 79 (157)
Q Consensus 33 ~ivIlD~L~~---~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~~ 79 (157)
++-+|=.|.. .+.++-++||+.+|++++.|++++..|.+.|||.+.+
T Consensus 29 Alr~L~~LA~~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~aGlv~s~r 78 (159)
T 3lwf_A 29 GLTITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIR 78 (159)
T ss_dssp HHHHHHHHHHTTTSCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHhcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEec
Confidence 3444444443 2469999999999999999999999999999999863
No 67
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=96.40 E-value=0.006 Score=47.01 Aligned_cols=55 Identities=13% Similarity=0.167 Sum_probs=46.6
Q ss_pred HHHHcCCCchHHHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeeeE
Q psy5744 24 VVRGFYSIEDSLIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQTRL 79 (157)
Q Consensus 24 v~R~Fy~~e~ivIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~~ 79 (157)
+.+++-++-...|+..|. ++.++=.+||+.+|+++..|...|..|.+.|||..+.
T Consensus 8 ilkaL~~~~rl~IL~~L~-~~~~s~~eLa~~l~is~stvs~hLk~Le~~GLV~~~~ 62 (202)
T 2p4w_A 8 LLDVLGNETRRRILFLLT-KRPYFVSELSRELGVGQKAVLEHLRILEEAGLIESRV 62 (202)
T ss_dssp HHHHHHSHHHHHHHHHHH-HSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHhCCHHHHHHHHHHH-hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEe
Confidence 445555666677888874 6789999999999999999999999999999999864
No 68
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=96.40 E-value=0.02 Score=39.42 Aligned_cols=72 Identities=11% Similarity=0.172 Sum_probs=54.3
Q ss_pred HHHHHHcCCCchHHHHHHHHhCCCcCHHHHHHHh-CCChHHHHHHHHHHhhCcceeeeEeeeecCCCceeEEEEEEecch
Q psy5744 22 RLVVRGFYSIEDSLIIDMLVRNPCMKEDDICELL-KFERKMLRARISTLKNDKIIQTRLRMETGLDGKAQKVNYYFINYQ 100 (157)
Q Consensus 22 ~~v~R~Fy~~e~ivIlD~L~~~~~i~dedLa~~l-~i~~k~vRkiL~~L~~d~Lv~~~~~~e~~~~gk~~~~~yw~I~y~ 100 (157)
..+...+-+.-.+.||..|. ++.++-.+||+.+ |++...|.+.|..|+++|||..+. ...| ....+|++.-.
T Consensus 13 ~~~l~~l~~~~~~~IL~~L~-~~~~~~~eLa~~l~~is~~tvs~~L~~Le~~GlI~r~~---~~~d---~r~~~~~LT~~ 85 (112)
T 1z7u_A 13 NLALSTINGKWKLSLMDELF-QGTKRNGELMRALDGITQRVLTDRLREMEKDGLVHRES---FNEL---PPRVEYTLTPE 85 (112)
T ss_dssp HHHHHTTCSTTHHHHHHHHH-HSCBCHHHHHHHSTTCCHHHHHHHHHHHHHHTSEEEEE---ECCS---SCEEEEEECHH
T ss_pred HHHHHHHcCccHHHHHHHHH-hCCCCHHHHHHHhccCCHHHHHHHHHHHHHCCCEEEee---cCCC---CCeEEEEECHh
Confidence 34455555665677888877 4789999999999 999999999999999999998652 1123 23456677653
No 69
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=96.40 E-value=0.0074 Score=43.37 Aligned_cols=47 Identities=19% Similarity=0.268 Sum_probs=42.5
Q ss_pred hHHHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeeeE
Q psy5744 33 DSLIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQTRL 79 (157)
Q Consensus 33 ~ivIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~~ 79 (157)
...|+++|..++.++-.+||+.+|++...+++.+.+|.+.|+|....
T Consensus 7 d~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~ 53 (144)
T 2cfx_A 7 DLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYT 53 (144)
T ss_dssp HHHHHHHHHHCSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEe
Confidence 35688888888999999999999999999999999999999998653
No 70
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=96.38 E-value=0.058 Score=37.36 Aligned_cols=47 Identities=17% Similarity=0.253 Sum_probs=42.7
Q ss_pred chHHHHHHHHhCC--CcCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 32 EDSLIIDMLVRNP--CMKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 32 e~ivIlD~L~~~~--~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
....||..|..++ .++-.+||+.+|+++..|.+++..|.+.|+|...
T Consensus 35 ~~~~iL~~l~~~~~~~~~~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~ 83 (141)
T 3bro_A 35 TQMTIIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQRMEIKKLLYRK 83 (141)
T ss_dssp HHHHHHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHCCCCCcCHHHHHHHHCCCcchHHHHHHHHHHCCCEEee
Confidence 3577888888876 8999999999999999999999999999999865
No 71
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=96.37 E-value=0.0077 Score=43.46 Aligned_cols=47 Identities=11% Similarity=0.224 Sum_probs=42.4
Q ss_pred hHHHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeeeE
Q psy5744 33 DSLIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQTRL 79 (157)
Q Consensus 33 ~ivIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~~ 79 (157)
...|+.+|..++.++-.+||+.+|++...+++.+.+|.+.|+|....
T Consensus 9 ~~~iL~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~ 55 (150)
T 2w25_A 9 DRILVRELAADGRATLSELATRAGLSVSAVQSRVRRLESRGVVQGYS 55 (150)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEE
Confidence 45688888888999999999999999999999999999999997653
No 72
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=96.35 E-value=0.063 Score=37.39 Aligned_cols=48 Identities=23% Similarity=0.353 Sum_probs=44.0
Q ss_pred CchHHHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 31 IEDSLIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 31 ~e~ivIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
.....||..|..++.++-.+||+.+|+++..|.+++..|.+.|+|...
T Consensus 29 ~~~~~iL~~l~~~~~~t~~~la~~l~~s~~~vs~~l~~Le~~gli~r~ 76 (144)
T 1lj9_A 29 RGQYLYLVRVCENPGIIQEKIAELIKVDRTTAARAIKRLEEQGFIYRQ 76 (144)
T ss_dssp TTHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHCcCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEee
Confidence 446788888888889999999999999999999999999999999875
No 73
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=96.34 E-value=0.035 Score=39.75 Aligned_cols=48 Identities=13% Similarity=0.225 Sum_probs=43.9
Q ss_pred CchHHHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 31 IEDSLIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 31 ~e~ivIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
.....||..|..++.++-.+||+.+|+++..+.+++..|.+.|+|...
T Consensus 50 ~~q~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~ 97 (159)
T 3s2w_A 50 SGQFPFLMRLYREDGINQESLSDYLKIDKGTTARAIQKLVDEGYVFRQ 97 (159)
T ss_dssp TTTHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe
Confidence 446778888888899999999999999999999999999999999865
No 74
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=96.33 E-value=0.026 Score=40.63 Aligned_cols=47 Identities=17% Similarity=0.278 Sum_probs=42.7
Q ss_pred hHHHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeeeE
Q psy5744 33 DSLIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQTRL 79 (157)
Q Consensus 33 ~ivIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~~ 79 (157)
..-|+.+|..++.++-.+||+.+|++...+++.+..|.+.|+|....
T Consensus 10 d~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~ 56 (152)
T 2cg4_A 10 DRGILEALMGNARTAYAELAKQFGVSPETIHVRVEKMKQAGIITGAR 56 (152)
T ss_dssp HHHHHHHHHHCTTSCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHcCCcceEE
Confidence 45688888888999999999999999999999999999999998653
No 75
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=96.29 E-value=0.021 Score=40.47 Aligned_cols=76 Identities=4% Similarity=0.183 Sum_probs=53.5
Q ss_pred CCCCCcccccchHHHHHHHHHHHHHc--------CCCchHHHHHHHHhC-CCcCHHHHHHHhCCChHHHHHHHHHHhhCc
Q psy5744 3 TSDEGYVHTEVPTSLKQLSRLVVRGF--------YSIEDSLIIDMLVRN-PCMKEDDICELLKFERKMLRARISTLKNDK 73 (157)
Q Consensus 3 ~~~~~~~~~~ip~~~~~Lv~~v~R~F--------y~~e~ivIlD~L~~~-~~i~dedLa~~l~i~~k~vRkiL~~L~~d~ 73 (157)
|++.......+.-.+..+.+.+.+.+ .+.....||..|..+ +.++-.+||+.+++++..+.+++..|.+.|
T Consensus 3 M~~~~~l~~~l~~~l~~~~~~~~~~~~~~l~~~glt~~q~~vL~~l~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~G 82 (150)
T 3fm5_A 3 MAESQALSDDIGFLLSRVGGMVLGAVNKALVPTGLRVRSYSVLVLACEQAEGVNQRGVAATMGLDPSQIVGLVDELEERG 82 (150)
T ss_dssp CCSCCCGGGCHHHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHHHSTTCCCSHHHHHHHTCCHHHHHHHHHHHHTTT
T ss_pred CccccCcchhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCCcCHHHHHHHHCCCHhHHHHHHHHHHHCC
Confidence 33444444455555554444444333 123367788888765 478999999999999999999999999999
Q ss_pred ceeee
Q psy5744 74 IIQTR 78 (157)
Q Consensus 74 Lv~~~ 78 (157)
+|...
T Consensus 83 lv~r~ 87 (150)
T 3fm5_A 83 LVVRT 87 (150)
T ss_dssp SEEC-
T ss_pred CEEee
Confidence 99865
No 76
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=96.28 E-value=0.013 Score=41.61 Aligned_cols=46 Identities=13% Similarity=0.279 Sum_probs=42.6
Q ss_pred hHHHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 33 DSLIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 33 ~ivIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
...||..|..++.++-.+||+.+|+++..|.+++..|.+.|+|...
T Consensus 39 ~~~iL~~l~~~~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~ 84 (155)
T 1s3j_A 39 QLFVLASLKKHGSLKVSEIAERMEVKPSAVTLMADRLEQKNLIART 84 (155)
T ss_dssp HHHHHHHHHHHSEEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeec
Confidence 5778888888888999999999999999999999999999999865
No 77
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=96.22 E-value=0.027 Score=41.91 Aligned_cols=47 Identities=21% Similarity=0.343 Sum_probs=42.4
Q ss_pred hHHHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeeeE
Q psy5744 33 DSLIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQTRL 79 (157)
Q Consensus 33 ~ivIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~~ 79 (157)
...|++.|-+++.++-.+||+.+|++...+++.+.+|.+.|+|....
T Consensus 19 d~~IL~~L~~~~~~s~~eLA~~lglS~~tv~~~l~~L~~~G~I~~~~ 65 (171)
T 2ia0_A 19 DRNILRLLKKDARLTISELSEQLKKPESTIHFRIKKLQERGVIERYT 65 (171)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeec
Confidence 34688888888999999999999999999999999999999997553
No 78
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=96.22 E-value=0.0048 Score=43.44 Aligned_cols=46 Identities=11% Similarity=0.264 Sum_probs=41.7
Q ss_pred hHHHHHHHHhCCCcCHHHHHHHh--CCChHHHHHHHHHHhhCcceeee
Q psy5744 33 DSLIIDMLVRNPCMKEDDICELL--KFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 33 ~ivIlD~L~~~~~i~dedLa~~l--~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
..-||..|.+++.++-.+||+.+ |+++..|++.|..|.++|||...
T Consensus 15 d~~IL~~L~~~g~~s~~eLA~~l~~giS~~aVs~rL~~Le~~GLV~~~ 62 (111)
T 3b73_A 15 DDRILEIIHEEGNGSPKELEDRDEIRISKSSVSRRLKKLADHDLLQPL 62 (111)
T ss_dssp HHHHHHHHHHHSCBCHHHHHTSTTCCSCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEec
Confidence 35578888888999999999999 99999999999999999999863
No 79
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=96.21 E-value=0.0076 Score=43.88 Aligned_cols=47 Identities=17% Similarity=0.212 Sum_probs=38.4
Q ss_pred hHHHHHHHHh--CCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeeeE
Q psy5744 33 DSLIIDMLVR--NPCMKEDDICELLKFERKMLRARISTLKNDKIIQTRL 79 (157)
Q Consensus 33 ~ivIlD~L~~--~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~~ 79 (157)
++-+|-.|.. .+.++-++||+.+|++++.|++++..|.+.|||.+.+
T Consensus 16 Al~~L~~La~~~~~~~~~~~iA~~~~i~~~~l~kil~~L~~~Glv~s~r 64 (149)
T 1ylf_A 16 AVHILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNR 64 (149)
T ss_dssp HHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC-
T ss_pred HHHHHHHHHhCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEcc
Confidence 3445555554 3469999999999999999999999999999998763
No 80
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=96.20 E-value=0.0067 Score=43.06 Aligned_cols=46 Identities=22% Similarity=0.412 Sum_probs=41.5
Q ss_pred hHHHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 33 DSLIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 33 ~ivIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
...|+..|..++.++-.+||+.+|++...+++.+..|.+.|+|...
T Consensus 6 ~~~il~~L~~~~~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 51 (141)
T 1i1g_A 6 DKIILEILEKDARTPFTEIAKKLGISETAVRKRVKALEEKGIIEGY 51 (141)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTSSCCC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEecc
Confidence 4567888877888999999999999999999999999999999754
No 81
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=96.19 E-value=0.011 Score=43.32 Aligned_cols=47 Identities=17% Similarity=0.258 Sum_probs=42.5
Q ss_pred hHHHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeeeE
Q psy5744 33 DSLIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQTRL 79 (157)
Q Consensus 33 ~ivIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~~ 79 (157)
...|+++|..++.++-.|||+.+|++...+++.+..|.+.|+|....
T Consensus 12 ~~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~ 58 (162)
T 2p5v_A 12 DIKILQVLQENGRLTNVELSERVALSPSPCLRRLKQLEDAGIVRQYA 58 (162)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEeeec
Confidence 45688888888899999999999999999999999999999998653
No 82
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=96.19 E-value=0.0039 Score=43.04 Aligned_cols=36 Identities=17% Similarity=0.360 Sum_probs=32.8
Q ss_pred CCCc-CHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 43 NPCM-KEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 43 ~~~i-~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
.+.+ ++.+||+.+|++..-||+.|..|.++|+|...
T Consensus 40 g~~lps~~eLa~~lgVSr~tVr~al~~L~~~GlI~~~ 76 (102)
T 2b0l_A 40 NEGLLVASKIADRVGITRSVIVNALRKLESAGVIESR 76 (102)
T ss_dssp TEEEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCcCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 4456 99999999999999999999999999999865
No 83
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=96.18 E-value=0.02 Score=40.95 Aligned_cols=48 Identities=13% Similarity=0.261 Sum_probs=43.2
Q ss_pred CchHHHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 31 IEDSLIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 31 ~e~ivIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
.....||..|..++.++-.+||+.+|++...|.+++..|.+.|+|...
T Consensus 49 ~~~~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le~~glv~r~ 96 (162)
T 2fa5_A 49 IPEWRVITILALYPGSSASEVSDRTAMDKVAVSRAVARLLERGFIRRE 96 (162)
T ss_dssp HHHHHHHHHHHHSTTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC-
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeee
Confidence 336778989888899999999999999999999999999999999865
No 84
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=96.18 E-value=0.0084 Score=43.22 Aligned_cols=47 Identities=23% Similarity=0.379 Sum_probs=42.5
Q ss_pred hHHHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeeeE
Q psy5744 33 DSLIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQTRL 79 (157)
Q Consensus 33 ~ivIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~~ 79 (157)
...|+..|-.++.++-.+||+.+|++...+++.+..|.+.|+|....
T Consensus 11 d~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~ 57 (151)
T 2dbb_A 11 DMQLVKILSENSRLTYRELADILNTTRQRIARRIDKLKKLGIIRKFT 57 (151)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHTTSCHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEE
Confidence 45688888888999999999999999999999999999999998553
No 85
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=96.18 E-value=0.015 Score=40.98 Aligned_cols=68 Identities=13% Similarity=0.247 Sum_probs=51.3
Q ss_pred ccchHHHHHHHHHHHHHcCC---------CchHHHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 11 TEVPTSLKQLSRLVVRGFYS---------IEDSLIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 11 ~~ip~~~~~Lv~~v~R~Fy~---------~e~ivIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
..+.-.+..+.+.+.+.|-. .....||..|..++.++-.+||+.+|+++..|.+++..|.+.|+|...
T Consensus 11 ~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~ 87 (148)
T 3nrv_A 11 RHATAQINMLANKLMLKSSTAYTQKFGIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVN 87 (148)
T ss_dssp GCHHHHHHHHHHHHHHC----CCGGGTCCHHHHHHHHHHHHSSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEee
Confidence 34445555555555544422 225678888888899999999999999999999999999999999865
No 86
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=96.17 E-value=0.012 Score=42.11 Aligned_cols=68 Identities=15% Similarity=0.106 Sum_probs=51.3
Q ss_pred HHcCCCchHHHHHHHHhCCCcCHHHHHHHh-CCChHHHHHHHHHHhhCcceeeeEeeeecCCCceeEEEEEEecch
Q psy5744 26 RGFYSIEDSLIIDMLVRNPCMKEDDICELL-KFERKMLRARISTLKNDKIIQTRLRMETGLDGKAQKVNYYFINYQ 100 (157)
Q Consensus 26 R~Fy~~e~ivIlD~L~~~~~i~dedLa~~l-~i~~k~vRkiL~~L~~d~Lv~~~~~~e~~~~gk~~~~~yw~I~y~ 100 (157)
..+-+.-.+.||..|. ++.++=.+|++.+ |+++..|-+.|..|+++|||..+. .. .| ....+|++.-.
T Consensus 30 ~~l~~~w~l~IL~~L~-~g~~~~~eLa~~l~gis~~tls~~L~~Le~~GlV~r~~--~~-~d---~r~~~y~LT~~ 98 (131)
T 1yyv_A 30 KHVTSRWGVLILVALR-DGTHRFSDLRRXMGGVSEXMLAQSLQALEQDGFLNRVS--YP-VV---PPHVEYSLTPL 98 (131)
T ss_dssp HHHHSHHHHHHHHHGG-GCCEEHHHHHHHSTTCCHHHHHHHHHHHHHHTCEEEEE--EC-SS---SCEEEEEECHH
T ss_pred HHHcCCcHHHHHHHHH-cCCCCHHHHHHHhccCCHHHHHHHHHHHHHCCcEEEEe--cC-CC---CCeEEEEECcc
Confidence 3333444567787776 7889999999999 799999999999999999999652 11 23 33567777753
No 87
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=96.13 E-value=0.078 Score=36.76 Aligned_cols=48 Identities=17% Similarity=0.239 Sum_probs=43.2
Q ss_pred CchHHHHHHHHhCC--CcCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 31 IEDSLIIDMLVRNP--CMKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 31 ~e~ivIlD~L~~~~--~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
+....||..|..++ .++-.+||+.+|+++..+.+++..|.+.|+|...
T Consensus 31 ~~~~~vL~~l~~~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~ 80 (139)
T 3eco_A 31 NEQGHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLERKKLIYRY 80 (139)
T ss_dssp HHHHHHHHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHhcCCCCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeec
Confidence 34677888888875 8999999999999999999999999999999865
No 88
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=96.13 E-value=0.036 Score=41.26 Aligned_cols=50 Identities=6% Similarity=0.143 Sum_probs=45.0
Q ss_pred CCCchHHHHHHHHh--CCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 29 YSIEDSLIIDMLVR--NPCMKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 29 y~~e~ivIlD~L~~--~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
.+.....||..|.+ ++.++-.+||+.+|+++..+.+++..|.+.|+|...
T Consensus 39 lt~~q~~vL~~L~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~ 90 (189)
T 3nqo_A 39 LTSRQYMTILSILHLPEEETTLNNIARKMGTSKQNINRLVANLEKNGYVDVI 90 (189)
T ss_dssp SCHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEec
Confidence 45667889999887 568999999999999999999999999999999975
No 89
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=96.05 E-value=0.0066 Score=45.14 Aligned_cols=47 Identities=15% Similarity=0.201 Sum_probs=38.6
Q ss_pred hHHHHHHHHh--CCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeeeE
Q psy5744 33 DSLIIDMLVR--NPCMKEDDICELLKFERKMLRARISTLKNDKIIQTRL 79 (157)
Q Consensus 33 ~ivIlD~L~~--~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~~ 79 (157)
++-+|-.|.. .+.++-++||+.+|++++.|+|++..|.+.|||.+.+
T Consensus 14 Alr~l~~La~~~~~~~s~~~IA~~~~is~~~l~kil~~L~~aGlv~s~r 62 (162)
T 3k69_A 14 AVHSILYLDAHRDSKVASRELAQSLHLNPVMIRNILSVLHKHGYLTGTV 62 (162)
T ss_dssp HHHHHHHHHTTTTSCBCHHHHHHHHTSCGGGTHHHHHHHHHTTSSEEEC
T ss_pred HHHHHHHHHhCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeec
Confidence 3445545553 3569999999999999999999999999999998763
No 90
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=96.05 E-value=0.03 Score=39.66 Aligned_cols=46 Identities=15% Similarity=0.199 Sum_probs=42.6
Q ss_pred hHHHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 33 DSLIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 33 ~ivIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
...||..|..++.++-.+||+.+|++...|.+++..|.+.|+|...
T Consensus 49 ~~~iL~~l~~~~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~ 94 (153)
T 2pex_A 49 QYLVMLVLWETDERSVSEIGERLYLDSATLTPLLKRLQAAGLVTRT 94 (153)
T ss_dssp HHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHhCCCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeec
Confidence 5678888888889999999999999999999999999999999865
No 91
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=96.05 E-value=0.0084 Score=43.10 Aligned_cols=46 Identities=26% Similarity=0.380 Sum_probs=41.6
Q ss_pred hHHHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 33 DSLIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 33 ~ivIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
..-|+..|..++.++-.+||+.+|+++..+++.+.+|.+.|+|...
T Consensus 5 ~~~il~~L~~~~~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 50 (150)
T 2pn6_A 5 DLRILKILQYNAKYSLDEIAREIRIPKATLSYRIKKLEKDGVIKGY 50 (150)
T ss_dssp HHHHHHHHTTCTTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEE
Confidence 3467888877889999999999999999999999999999999864
No 92
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=96.00 E-value=0.01 Score=38.44 Aligned_cols=47 Identities=6% Similarity=0.264 Sum_probs=42.1
Q ss_pred chHHHHHHHHhCCCcCHHHHHHHhC----CChHHHHHHHHHHhhCcceeee
Q psy5744 32 EDSLIIDMLVRNPCMKEDDICELLK----FERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 32 e~ivIlD~L~~~~~i~dedLa~~l~----i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
....||++|..++.++-.|||+.++ +++..|.++|..|.+.|+|...
T Consensus 10 ~e~~vL~~L~~~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~kGlv~r~ 60 (82)
T 1p6r_A 10 AELEVMKVIWKHSSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALNHH 60 (82)
T ss_dssp HHHHHHHHHHTSSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHhhcCCccHHHHHHHHHHHHHCCCeEEE
Confidence 3567899988888999999999996 7899999999999999999865
No 93
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=96.00 E-value=0.23 Score=34.58 Aligned_cols=63 Identities=13% Similarity=0.110 Sum_probs=49.9
Q ss_pred CCchHHHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeeeEeeeecCCCceeEEEEEEecc
Q psy5744 30 SIEDSLIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQTRLRMETGLDGKAQKVNYYFINY 99 (157)
Q Consensus 30 ~~e~ivIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~~~~e~~~~gk~~~~~yw~I~y 99 (157)
++....||..|..++. +-.+||+.+|+++..+-+++..|.+.|+|.... ...| ....++++.-
T Consensus 36 t~~~~~iL~~l~~~~~-~~~~la~~l~~~~~tvs~~l~~Le~~Glv~r~~---~~~D---~R~~~~~LT~ 98 (144)
T 3f3x_A 36 SYLDFSILKATSEEPR-SMVYLANRYFVTQSAITAAVDKLEAKGLVRRIR---DSKD---RRIVIVEITP 98 (144)
T ss_dssp CHHHHHHHHHHHHSCE-EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE---ETTE---EEEEEEEECH
T ss_pred CHHHHHHHHHHHHCCC-CHHHHHHHHCCChhHHHHHHHHHHHCCCEEecc---CCCC---CceEEEEECH
Confidence 4456789989888877 999999999999999999999999999999652 2122 3455666664
No 94
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=95.99 E-value=0.038 Score=38.68 Aligned_cols=48 Identities=13% Similarity=0.159 Sum_probs=43.6
Q ss_pred CchHHHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 31 IEDSLIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 31 ~e~ivIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
+....||..|..++.++-.+||+.+|+++..+.+++..|.+.|+|...
T Consensus 37 ~~~~~iL~~l~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~ 84 (143)
T 3oop_A 37 PEQWSVLEGIEANEPISQKEIALWTKKDTPTVNRIVDVLLRKELIVRE 84 (143)
T ss_dssp HHHHHHHHHHHHHSSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCeecc
Confidence 336778888888899999999999999999999999999999999865
No 95
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=95.99 E-value=0.011 Score=42.10 Aligned_cols=47 Identities=15% Similarity=0.241 Sum_probs=43.1
Q ss_pred CchHHHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceee
Q psy5744 31 IEDSLIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQT 77 (157)
Q Consensus 31 ~e~ivIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~ 77 (157)
+....||..|..++.++-.+||+.+|+++..|.+++..|.+.|+|..
T Consensus 41 ~~~~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r 87 (154)
T 2qww_A 41 IQQLAMINVIYSTPGISVADLTKRLIITGSSAAANVDGLISLGLVVK 87 (154)
T ss_dssp HHHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEe
Confidence 33577888888888999999999999999999999999999999986
No 96
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=95.98 E-value=0.012 Score=38.20 Aligned_cols=47 Identities=11% Similarity=0.216 Sum_probs=42.1
Q ss_pred chHHHHHHHHhC--CCcCHHHHHHHh-----CCChHHHHHHHHHHhhCcceeee
Q psy5744 32 EDSLIIDMLVRN--PCMKEDDICELL-----KFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 32 e~ivIlD~L~~~--~~i~dedLa~~l-----~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
....|+++|..+ +.++-+||++.+ +++...|++.|..|.+.|+|...
T Consensus 18 ~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~~~ 71 (83)
T 2fu4_A 18 PRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTRH 71 (83)
T ss_dssp HHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeEEE
Confidence 357799998864 689999999999 99999999999999999999854
No 97
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=95.98 E-value=0.031 Score=38.63 Aligned_cols=47 Identities=15% Similarity=0.168 Sum_probs=43.2
Q ss_pred chHHHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 32 EDSLIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 32 e~ivIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
....||..|..++.++-.+||+.+|+++..+.+++..|.+.|+|...
T Consensus 34 ~~~~iL~~l~~~~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~ 80 (139)
T 3bja_A 34 VQFGVIQVLAKSGKVSMSKLIENMGCVPSNMTTMIQRMKRDGYVMTE 80 (139)
T ss_dssp HHHHHHHHHHHSCSEEHHHHHHHCSSCCTTHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHHCCChhHHHHHHHHHHHCCCeeec
Confidence 36778888888889999999999999999999999999999999865
No 98
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=95.98 E-value=0.033 Score=39.35 Aligned_cols=36 Identities=8% Similarity=0.095 Sum_probs=32.3
Q ss_pred CCCc-CHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 43 NPCM-KEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 43 ~~~i-~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
...+ ++.+||+.+|++..-||+++..|.++|+|..+
T Consensus 34 g~~Lps~~~La~~~~vSr~tvr~Al~~L~~~G~i~~~ 70 (125)
T 3neu_A 34 EDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAK 70 (125)
T ss_dssp TCBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEe
Confidence 3345 69999999999999999999999999999865
No 99
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=95.94 E-value=0.018 Score=40.47 Aligned_cols=46 Identities=13% Similarity=0.247 Sum_probs=42.4
Q ss_pred hHHHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 33 DSLIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 33 ~ivIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
...||..|..++.++-.+||+.+|++...|.+++..|.+.|+|...
T Consensus 42 ~~~iL~~l~~~~~~~~~~la~~l~~~~~tvs~~l~~L~~~glv~r~ 87 (147)
T 1z91_A 42 QYLALLLLWEHETLTVKKMGEQLYLDSGTLTPMLKRMEQQGLITRK 87 (147)
T ss_dssp HHHHHHHHHHHSEEEHHHHHHTTTCCHHHHHHHHHHHHHHTSEECC
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHCCCcCcHHHHHHHHHHCCCEEec
Confidence 5678888888889999999999999999999999999999999865
No 100
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=95.92 E-value=0.01 Score=43.64 Aligned_cols=45 Identities=18% Similarity=0.344 Sum_probs=41.6
Q ss_pred HHHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 34 SLIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 34 ivIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
.-|+++|-+++.++-.+||+.+|++...+++-+.+|.+.|+|...
T Consensus 6 ~~il~~L~~~~~~s~~~la~~lg~s~~tv~~rl~~L~~~g~i~~~ 50 (162)
T 3i4p_A 6 RKILRILQEDSTLAVADLAKKVGLSTTPCWRRIQKMEEDGVIRRR 50 (162)
T ss_dssp HHHHHHHTTCSCSCHHHHHHHHTCCHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeec
Confidence 468888888999999999999999999999999999999999854
No 101
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=95.87 E-value=0.17 Score=35.10 Aligned_cols=62 Identities=13% Similarity=0.111 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHcCC-CchHHHHHHHH-hCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 17 LKQLSRLVVRGFYS-IEDSLIIDMLV-RNPCMKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 17 ~~~Lv~~v~R~Fy~-~e~ivIlD~L~-~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
+.+......+.+-- +...-++..|. .++.++-.|||+.+|+++..+.+++..|.+.|+|...
T Consensus 11 ~~~~~~~~~~~~gl~~~~~~il~~L~~~~~~~t~~ela~~l~~~~stvs~~l~~L~~~G~v~r~ 74 (152)
T 1ku9_A 11 IIELFSELAKIHGLNKSVGAVYAILYLSDKPLTISDIMEELKISKGNVSMSLKKLEELGFVRKV 74 (152)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHCSSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 33444444444432 22445676765 4678999999999999999999999999999999864
No 102
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=95.86 E-value=0.017 Score=38.57 Aligned_cols=48 Identities=10% Similarity=0.198 Sum_probs=42.5
Q ss_pred CchHHHHHHHHhCCCcCHHHH----HHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 31 IEDSLIIDMLVRNPCMKEDDI----CELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 31 ~e~ivIlD~L~~~~~i~dedL----a~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
.....||..|.+++.++-.+| |+.+|+++..|.+++..|.+.|+|...
T Consensus 8 ~~q~~iL~~l~~~~~~~~~el~~~la~~l~is~~tvs~~l~~Le~~gli~r~ 59 (99)
T 1tbx_A 8 YPEAIVLAYLYDNEGIATYDLYKKVNAEFPMSTATFYDAKKFLIQEGFVKER 59 (99)
T ss_dssp CHHHHHHHHHTTCTTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCEEEE
Confidence 345678888888888999999 899999999999999999999999864
No 103
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=95.83 E-value=0.0098 Score=42.98 Aligned_cols=46 Identities=20% Similarity=0.325 Sum_probs=42.0
Q ss_pred hHHHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 33 DSLIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 33 ~ivIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
..-|+++|..++.++-.+||+.+|++...+++.+..|.+.|+|...
T Consensus 9 ~~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 54 (151)
T 2cyy_A 9 DKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRESGVIKKF 54 (151)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHCSCHHHHHHHHHHHHHHTSSCCC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEE
Confidence 4568888888899999999999999999999999999999999764
No 104
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=95.79 E-value=0.034 Score=39.67 Aligned_cols=35 Identities=9% Similarity=0.241 Sum_probs=32.0
Q ss_pred CCc-CHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 44 PCM-KEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 44 ~~i-~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
..+ ++.+||+.+|++..-||++|..|..+|+|...
T Consensus 26 ~~LPse~~La~~~gvSr~tVr~Al~~L~~~Gli~~~ 61 (129)
T 2ek5_A 26 QRVPSTNELAAFHRINPATARNGLTLLVEAGILYKK 61 (129)
T ss_dssp SCBCCHHHHHHHTTCCHHHHHHHHHHHHTTTSEEEE
T ss_pred CcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEe
Confidence 356 89999999999999999999999999999754
No 105
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=95.78 E-value=0.016 Score=41.97 Aligned_cols=45 Identities=20% Similarity=0.298 Sum_probs=36.8
Q ss_pred HHHHHHHHh-CCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeeeE
Q psy5744 34 SLIIDMLVR-NPCMKEDDICELLKFERKMLRARISTLKNDKIIQTRL 79 (157)
Q Consensus 34 ivIlD~L~~-~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~~ 79 (157)
+-+|=.|.. .+. +-++||+.++++++.|+|+|.+|.+.|||.+.+
T Consensus 12 l~~L~~La~~~~~-s~~~IA~~~~i~~~~l~kIl~~L~~aGlv~s~r 57 (145)
T 1xd7_A 12 IHILSLISMDEKT-SSEIIADSVNTNPVVVRRMISLLKKADILTSRA 57 (145)
T ss_dssp HHHHHHHHTCSCC-CHHHHHHHHTSCHHHHHHHHHHHHHTTSEECCS
T ss_pred HHHHHHHHhCCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCceEeec
Confidence 444444553 235 999999999999999999999999999998763
No 106
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.76 E-value=0.0037 Score=37.67 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=19.7
Q ss_pred cCCCCeeecCCCCCccchhhhhh
Q psy5744 124 ATSRSSFKCPRCLKTFTDLEPCL 146 (157)
Q Consensus 124 ~~~~~~Y~Cp~C~~~Ys~lda~~ 146 (157)
..+...|.||+|++.|+..++++
T Consensus 7 ~~~~~~~~CPrCn~~f~~~~sLr 29 (49)
T 2e72_A 7 GQDGGRKICPRCNAQFRVTEALR 29 (49)
T ss_dssp SCCSSCCCCTTTCCCCSSHHHHH
T ss_pred cccCCceeCCcccccccchHHHH
Confidence 34557899999999999999986
No 107
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=95.75 E-value=0.14 Score=36.83 Aligned_cols=47 Identities=13% Similarity=0.100 Sum_probs=39.2
Q ss_pred chHHHHHHHHhC--CCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 32 EDSLIIDMLVRN--PCMKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 32 e~ivIlD~L~~~--~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
....||..|..+ +.++-.+||+.+|++...|.+++..|.+.|+|...
T Consensus 47 ~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~ 95 (168)
T 3u2r_A 47 QQYNTLRLLRSVHPEGMATLQIADRLISRAPDITRLIDRLDDRGLVLRT 95 (168)
T ss_dssp HHHHHHHHHHHHTTSCEEHHHHHHHC---CTHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHhcCCCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEeec
Confidence 367788888874 58999999999999999999999999999999965
No 108
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=95.74 E-value=0.022 Score=39.43 Aligned_cols=52 Identities=23% Similarity=0.278 Sum_probs=43.1
Q ss_pred HHcCCCchHHHHHHHHhCCCcC--HHHHHHHh-CCChHHHHHHHHHHhhCcceeee
Q psy5744 26 RGFYSIEDSLIIDMLVRNPCMK--EDDICELL-KFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 26 R~Fy~~e~ivIlD~L~~~~~i~--dedLa~~l-~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
..+-++-.+.|+..|. ++..+ =.||++.+ |++++.+.+.|..|+++|||..+
T Consensus 22 ~~l~~~wrl~IL~~L~-~g~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~ 76 (111)
T 3df8_A 22 HLLGKKYTMLIISVLG-NGSTRQNFNDIRSSIPGISSTILSRRIKDLIDSGLVERR 76 (111)
T ss_dssp HHHHSTTHHHHHHHHT-SSSSCBCHHHHHHTSTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHcCccHHHHHHHHh-cCCCCCCHHHHHHHccCCCHHHHHHHHHHHHHCCCEEEe
Confidence 3444555677887776 66766 99999999 99999999999999999999854
No 109
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=95.72 E-value=0.018 Score=40.67 Aligned_cols=38 Identities=16% Similarity=0.213 Sum_probs=34.9
Q ss_pred HhCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 41 VRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 41 ~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
-.++.++-.+||+.+|+++.-|++++..|.+.|+|...
T Consensus 18 ~~~~~~~~~ela~~l~vs~~tvs~~l~~Le~~Glv~r~ 55 (142)
T 1on2_A 18 EEKGYARVSDIAEALAVHPSSVTKMVQKLDKDEYLIYE 55 (142)
T ss_dssp HHHSSCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred hhcCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEe
Confidence 34678999999999999999999999999999999864
No 110
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=95.70 E-value=0.016 Score=40.83 Aligned_cols=47 Identities=6% Similarity=0.151 Sum_probs=43.1
Q ss_pred chHHHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 32 EDSLIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 32 e~ivIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
....||..|..++.++-.|||+.+|+++..+.+++..|.+.|+|...
T Consensus 37 ~q~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~ 83 (140)
T 3hsr_A 37 TGYIVLMAIENDEKLNIKKLGERVFLDSGTLTPLLKKLEKKDYVVRT 83 (140)
T ss_dssp HHHHHHHHSCTTCEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCeEec
Confidence 36778888888899999999999999999999999999999999965
No 111
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=95.68 E-value=0.018 Score=41.47 Aligned_cols=44 Identities=16% Similarity=0.193 Sum_probs=37.9
Q ss_pred HHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 35 LIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 35 vIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
.|+..|..++.++..+||+.+|++..-|+++|..|.+.|+|..+
T Consensus 44 ~i~~~l~~~~~~~~~~la~~l~vs~~tvs~~l~~Le~~Glv~r~ 87 (155)
T 2h09_A 44 LISDLIREVGEARQVDMAARLGVSQPTVAKMLKRLATMGLIEMI 87 (155)
T ss_dssp HHHHHHHHHSCCCHHHHHHHHTSCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHhCCCcCHHHHHHHhCcCHHHHHHHHHHHHHCCCEEEe
Confidence 34555556678999999999999999999999999999998754
No 112
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=95.67 E-value=0.13 Score=37.37 Aligned_cols=46 Identities=11% Similarity=0.231 Sum_probs=42.0
Q ss_pred hHHHHHHHHh-CCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 33 DSLIIDMLVR-NPCMKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 33 ~ivIlD~L~~-~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
...||..|.. ++.++-.|||+.+|++...|.+++..|.+.|+|...
T Consensus 55 q~~vL~~L~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~GlV~r~ 101 (166)
T 3deu_A 55 HWVTLHNIHQLPPDQSQIQLAKAIGIEQPSLVRTLDQLEDKGLISRQ 101 (166)
T ss_dssp HHHHHHHHHHSCSSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHCCCHhhHHHHHHHHHHCCCEEee
Confidence 5678888887 678999999999999999999999999999999865
No 113
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=95.65 E-value=0.022 Score=43.41 Aligned_cols=51 Identities=18% Similarity=0.252 Sum_probs=44.2
Q ss_pred HcCCCchHHHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 27 GFYSIEDSLIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 27 ~Fy~~e~ivIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
++-++...-|+..|. ++.++-.+||+.+|+++..|++.+..|++.|+|...
T Consensus 16 ~l~d~~~~~IL~~L~-~~~~s~~eLA~~lglS~stv~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 16 VMLEDTRRKILKLLR-NKEMTISQLSEILGKTPQTIYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp HHHSHHHHHHHHHHT-TCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HhCCHHHHHHHHHHH-cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 334455567888887 788999999999999999999999999999999876
No 114
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=95.61 E-value=0.019 Score=40.11 Aligned_cols=46 Identities=11% Similarity=0.242 Sum_probs=42.3
Q ss_pred hHHHHHHHHhC--CCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 33 DSLIIDMLVRN--PCMKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 33 ~ivIlD~L~~~--~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
...||..|..+ +.++-.|||+.+|+++..+-+++..|.+.|+|...
T Consensus 39 q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~ 86 (127)
T 2frh_A 39 EFAVLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKILSQEDYFDKK 86 (127)
T ss_dssp HHHHHHHHHHTCCSEEEHHHHHHHSSSHHHHHHHHHHHHHHTTSSCCB
T ss_pred HHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEec
Confidence 56788888877 88999999999999999999999999999999865
No 115
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=95.59 E-value=0.018 Score=42.96 Aligned_cols=49 Identities=18% Similarity=0.272 Sum_probs=43.9
Q ss_pred CCchHHHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 30 SIEDSLIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 30 ~~e~ivIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
++-...|+.+|.+++.++-.|||+.+|++...+++.|.+|.+.|+|...
T Consensus 26 d~~d~~IL~~L~~~~~~s~~eLA~~lglS~~tv~~rl~~L~~~G~I~~~ 74 (171)
T 2e1c_A 26 DEIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRESGVIKKF 74 (171)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCCC
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEee
Confidence 4445678999888999999999999999999999999999999999754
No 116
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=95.54 E-value=0.053 Score=39.15 Aligned_cols=80 Identities=14% Similarity=0.190 Sum_probs=59.7
Q ss_pred CchHHHHHHHHh-CCCcCHHHHHHHh-----CCChHHHHHHHHHHhhCcceeeeEeeeecCCCceeEEEEEEecchhHHH
Q psy5744 31 IEDSLIIDMLVR-NPCMKEDDICELL-----KFERKMLRARISTLKNDKIIQTRLRMETGLDGKAQKVNYYFINYQTFVN 104 (157)
Q Consensus 31 ~e~ivIlD~L~~-~~~i~dedLa~~l-----~i~~k~vRkiL~~L~~d~Lv~~~~~~e~~~~gk~~~~~yw~I~y~~~~~ 104 (157)
+.-..|+++|.. ++.+|-+||.+.+ +++...|=+.|..|.+.|||... +. ++|..+ |-++-
T Consensus 22 ~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~---~~-~~~~~~----Y~~~~----- 88 (145)
T 2fe3_A 22 PQRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVKEL---TY-GDASSR----FDFVT----- 88 (145)
T ss_dssp HHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEEE---CC-TTSCCE----EEECC-----
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEEEE---ee-CCCceE----EECCC-----
Confidence 335679999986 4689999999999 89999999999999999999864 22 343221 22220
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCeeecCCCCCccchhh
Q psy5744 105 IVKYKLDVMRKRMEMEERDATSRSSFKCPRCLKTFTDLE 143 (157)
Q Consensus 105 vik~rl~~m~~~L~~~~~~~~~~~~Y~Cp~C~~~Ys~ld 143 (157)
..-..++|..||+.+.+.+
T Consensus 89 --------------------~~H~HliC~~Cg~v~~~~~ 107 (145)
T 2fe3_A 89 --------------------SDHYHAICENCGKIVDFHY 107 (145)
T ss_dssp --------------------CCEEEEEETTTCCEEECCC
T ss_pred --------------------CCcceEEECCCCCEEEecC
Confidence 1234799999999988753
No 117
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=95.54 E-value=0.11 Score=37.69 Aligned_cols=79 Identities=15% Similarity=0.241 Sum_probs=59.8
Q ss_pred hHHHHHHHHh-CCCcCHHHHHHHh-----CCChHHHHHHHHHHhhCcceeeeEeeeecCCCceeEEEEEEecchhHHHHH
Q psy5744 33 DSLIIDMLVR-NPCMKEDDICELL-----KFERKMLRARISTLKNDKIIQTRLRMETGLDGKAQKVNYYFINYQTFVNIV 106 (157)
Q Consensus 33 ~ivIlD~L~~-~~~i~dedLa~~l-----~i~~k~vRkiL~~L~~d~Lv~~~~~~e~~~~gk~~~~~yw~I~y~~~~~vi 106 (157)
-..|+++|.. ++.+|-+||.+.+ +++...|=+.|..|.+.|||... +. ++|. .+|-.+
T Consensus 29 R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~---~~-~~~~----~~Y~~~-------- 92 (150)
T 2xig_A 29 REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFISVL---ET-SKSG----RRYEIA-------- 92 (150)
T ss_dssp HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEE---EE-TTTE----EEEEES--------
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEEEE---Ee-CCCc----eEEEec--------
Confidence 4679999986 4689999999999 89999999999999999999864 33 3442 222222
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCeeecCCCCCccchhh
Q psy5744 107 KYKLDVMRKRMEMEERDATSRSSFKCPRCLKTFTDLE 143 (157)
Q Consensus 107 k~rl~~m~~~L~~~~~~~~~~~~Y~Cp~C~~~Ys~ld 143 (157)
.......++|..||+.+.+.+
T Consensus 93 ----------------~~~~H~HliC~~Cg~v~~~~~ 113 (150)
T 2xig_A 93 ----------------AKEHHDHIICLHCGKIIEFAD 113 (150)
T ss_dssp ----------------CSCCCEEEEETTTCCEEEECC
T ss_pred ----------------CCCCceEEEECCCCCEEEecC
Confidence 011346899999999988753
No 118
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=95.54 E-value=0.066 Score=37.95 Aligned_cols=45 Identities=9% Similarity=0.200 Sum_probs=40.7
Q ss_pred HHHHHHHHh-CCCcCHHHHHHHh-----CCChHHHHHHHHHHhhCcceeee
Q psy5744 34 SLIIDMLVR-NPCMKEDDICELL-----KFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 34 ivIlD~L~~-~~~i~dedLa~~l-----~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
..|+++|.. ++.+|-+||.+.+ +++...|=+.|..|.+.|||...
T Consensus 14 ~~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~~ 64 (131)
T 2o03_A 14 AAISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVDTL 64 (131)
T ss_dssp HHHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEEEE
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEEEE
Confidence 568999986 4689999999999 99999999999999999999865
No 119
>4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida}
Probab=95.53 E-value=0.046 Score=41.08 Aligned_cols=72 Identities=15% Similarity=0.207 Sum_probs=55.1
Q ss_pred HHHHcCCCchHHHHHHHHhCCCcCHHHHHHHhC-CChHHHHHHHHHHhhCcceeeeEeeeecCCCceeEEEEEEecch
Q psy5744 24 VVRGFYSIEDSLIIDMLVRNPCMKEDDICELLK-FERKMLRARISTLKNDKIIQTRLRMETGLDGKAQKVNYYFINYQ 100 (157)
Q Consensus 24 v~R~Fy~~e~ivIlD~L~~~~~i~dedLa~~l~-i~~k~vRkiL~~L~~d~Lv~~~~~~e~~~~gk~~~~~yw~I~y~ 100 (157)
+.++.-.|--+-|+..|. ++..+=-+||+.+| +++..|-+.|..|++.|||........ ++....||.+.-.
T Consensus 16 ~~~~La~P~Rl~il~~L~-~~~~~~~~l~~~l~~~~~~~~s~Hl~~L~~aglv~~~~e~~~----~g~~er~y~~~~~ 88 (182)
T 4g6q_A 16 LVDLLHHPLRWRITQLLI-GRSLTTRELAELLPDVATTTLYRQVGILVKAGVLMVTAEHQV----RGAVERTYTLNTQ 88 (182)
T ss_dssp HHHHTTSHHHHHHHHHTT-TSCEEHHHHHHHCTTBCHHHHHHHHHHHHHHTSEEEEEEEEE----TTEEEEEEEECTT
T ss_pred HHHHhCCHHHHHHHHHHH-hCCCCHHHHHHHhcCCCHHHHHHHHHHHHHCCCeEEEEeecc----cCcceeEEEeccc
Confidence 445555666677888875 67889999999996 999999999999999999997743322 2355668877643
No 120
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=95.51 E-value=0.036 Score=39.29 Aligned_cols=48 Identities=13% Similarity=0.153 Sum_probs=43.4
Q ss_pred CchHHHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 31 IEDSLIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 31 ~e~ivIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
+....||..|..++.++-.+||+.+|+++..|.+++..|.+.|+|...
T Consensus 41 ~~q~~iL~~l~~~~~~~~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~ 88 (149)
T 4hbl_A 41 YSQYLVMLTLWEENPQTLNSIGRHLDLSSNTLTPMLKRLEQSGWVKRE 88 (149)
T ss_dssp HHHHHHHHHHHHSSSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEC-
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeC
Confidence 346788989888999999999999999999999999999999999865
No 121
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=95.51 E-value=0.043 Score=39.39 Aligned_cols=48 Identities=8% Similarity=0.102 Sum_probs=43.6
Q ss_pred CchHHHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 31 IEDSLIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 31 ~e~ivIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
..+..||..|..++.++-.+||+.+|+++..+.+++.+|.+.|+|...
T Consensus 53 ~~q~~vL~~l~~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~ 100 (161)
T 3e6m_A 53 TPKLRLLSSLSAYGELTVGQLATLGVMEQSTTSRTVDQLVDEGLAARS 100 (161)
T ss_dssp HHHHHHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEee
Confidence 336778888888889999999999999999999999999999999865
No 122
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=95.48 E-value=0.026 Score=40.27 Aligned_cols=48 Identities=10% Similarity=0.126 Sum_probs=42.4
Q ss_pred CchHHHHHHHH-hCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 31 IEDSLIIDMLV-RNPCMKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 31 ~e~ivIlD~L~-~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
..+..||..|. .++.++-.+||+.+|++...+.+++..|.+.|+|...
T Consensus 47 ~~~~~iL~~L~~~~~~~~~~ela~~l~i~~~tvs~~l~~Le~~Gli~r~ 95 (160)
T 3boq_A 47 LAKFDAMAQLARNPDGLSMGKLSGALKVTNGNVSGLVNRLIKDGMVVKA 95 (160)
T ss_dssp HHHHHHHHHHHHCTTCEEHHHHHHHCSSCCSCHHHHHHHHHHHTSEEEC
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHCCChhhHHHHHHHHHHCCCEEee
Confidence 33677888884 5788999999999999999999999999999999865
No 123
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=95.45 E-value=0.052 Score=38.44 Aligned_cols=35 Identities=14% Similarity=0.141 Sum_probs=32.1
Q ss_pred CCc-CHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 44 PCM-KEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 44 ~~i-~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
..+ ++.+||+.+|++..-||++|..|..+|+|...
T Consensus 33 ~~lPse~~La~~~~vSr~tvr~Al~~L~~~Gli~~~ 68 (126)
T 3by6_A 33 DQLPSVRETALQEKINPNTVAKAYKELEAQKVIRTI 68 (126)
T ss_dssp CEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 456 89999999999999999999999999999754
No 124
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=95.44 E-value=0.028 Score=42.82 Aligned_cols=46 Identities=7% Similarity=-0.031 Sum_probs=42.6
Q ss_pred hHHHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 33 DSLIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 33 ~ivIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
...||..|..++.++-.+||+.+|++...+-+++..|.+.|+|...
T Consensus 50 q~~iL~~L~~~~~~t~~eLa~~l~i~~stvs~~l~~Le~~GlV~r~ 95 (207)
T 2fxa_A 50 EHHILWIAYQLNGASISEIAKFGVMHVSTAFNFSKKLEERGYLRFS 95 (207)
T ss_dssp HHHHHHHHHHHTSEEHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe
Confidence 5678888888889999999999999999999999999999999865
No 125
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=95.43 E-value=0.024 Score=39.86 Aligned_cols=47 Identities=13% Similarity=0.141 Sum_probs=43.1
Q ss_pred chHHHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 32 EDSLIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 32 e~ivIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
....||..|..++.++-.+||+.+|++...+.+++..|.+.|+|...
T Consensus 32 ~q~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~ 78 (145)
T 3g3z_A 32 NLFAVLYTLATEGSRTQKHIGEKWSLPKQTVSGVCKTLAGQGLIEWQ 78 (145)
T ss_dssp HHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeec
Confidence 36788888888888999999999999999999999999999999864
No 126
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=95.43 E-value=0.045 Score=39.07 Aligned_cols=78 Identities=12% Similarity=0.173 Sum_probs=58.5
Q ss_pred hHHHHHHHHh-C-CCcCHHHHHHHh-----CCChHHHHHHHHHHhhCcceeeeEeeeecCCCceeEEEEEEecchhHHHH
Q psy5744 33 DSLIIDMLVR-N-PCMKEDDICELL-----KFERKMLRARISTLKNDKIIQTRLRMETGLDGKAQKVNYYFINYQTFVNI 105 (157)
Q Consensus 33 ~ivIlD~L~~-~-~~i~dedLa~~l-----~i~~k~vRkiL~~L~~d~Lv~~~~~~e~~~~gk~~~~~yw~I~y~~~~~v 105 (157)
-..|+++|.. + +.+|-+||.+.+ +++...|=+.|..|.+.|||... +. ++|.. +|-++..
T Consensus 20 R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~---~~-~~~~~----~Y~~~~~----- 86 (136)
T 1mzb_A 20 RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVVRH---NF-DGGHA----VFELADS----- 86 (136)
T ss_dssp HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEE---CS-SSSSC----EEEESSS-----
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEEEE---Ee-CCCce----EEEeCCC-----
Confidence 4679999986 3 679999999999 89999999999999999999864 22 33322 2222211
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCeeecCCCCCccchh
Q psy5744 106 VKYKLDVMRKRMEMEERDATSRSSFKCPRCLKTFTDL 142 (157)
Q Consensus 106 ik~rl~~m~~~L~~~~~~~~~~~~Y~Cp~C~~~Ys~l 142 (157)
.....++|..||+.+.+.
T Consensus 87 -------------------~~H~HliC~~Cg~v~~~~ 104 (136)
T 1mzb_A 87 -------------------GHHDHMVCVDTGEVIEFM 104 (136)
T ss_dssp -------------------CCCEEEEETTTCCEEEEC
T ss_pred -------------------CcceEEEECCCCCEEEec
Confidence 234679999999999874
No 127
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=95.41 E-value=0.034 Score=39.03 Aligned_cols=36 Identities=17% Similarity=0.252 Sum_probs=33.8
Q ss_pred CCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 43 NPCMKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 43 ~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
++.++-.+||+.+|++...|++++..|.+.|+|...
T Consensus 29 ~~~~s~~ela~~l~is~~tv~~~l~~Le~~Gli~r~ 64 (139)
T 2x4h_A 29 GEGAKINRIAKDLKIAPSSVFEEVSHLEEKGLVKKK 64 (139)
T ss_dssp TSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCcCHHHHHHHhCCChHHHHHHHHHHHHCCCEEec
Confidence 578999999999999999999999999999999864
No 128
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=95.39 E-value=0.05 Score=42.34 Aligned_cols=36 Identities=11% Similarity=0.399 Sum_probs=33.6
Q ss_pred CCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 43 NPCMKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 43 ~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
...+++.+||+.+|++..-||+.|..|..+|||...
T Consensus 47 G~~L~e~~La~~lgVSr~~VReAL~~L~~~Glv~~~ 82 (237)
T 3c7j_A 47 GTALRQQELATLFGVSRMPVREALRQLEAQSLLRVE 82 (237)
T ss_dssp TCBCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCeeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe
Confidence 557899999999999999999999999999999865
No 129
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=95.36 E-value=0.18 Score=36.52 Aligned_cols=63 Identities=17% Similarity=0.324 Sum_probs=47.3
Q ss_pred hHHHHHHHHhCCCcCHHHHHHHh--------CCChHHHHHHHHHHhhCcceeeeEeeeecCCCceeEEEEEEecch
Q psy5744 33 DSLIIDMLVRNPCMKEDDICELL--------KFERKMLRARISTLKNDKIIQTRLRMETGLDGKAQKVNYYFINYQ 100 (157)
Q Consensus 33 ~ivIlD~L~~~~~i~dedLa~~l--------~i~~k~vRkiL~~L~~d~Lv~~~~~~e~~~~gk~~~~~yw~I~y~ 100 (157)
...||-+|. .+.++-.+|++.+ +++...|-.+|.+|+++|||..+... . +++ ..+.+|.|.-.
T Consensus 43 ~~~IL~~L~-~~~~~gyeI~~~l~~~~~~~~~is~gtLy~~L~rLE~~GlI~~~~~~-~-~~~--~~rk~Y~LT~~ 113 (145)
T 1xma_A 43 DTIILSLLI-EGDSYGYEISKNIRIKTDELYVIKETTLYSAFARLEKNGYIKSYYGE-E-TQG--KRRTYYRITPE 113 (145)
T ss_dssp HHHHHHHHH-HCCEEHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHTTSEEEEEEE-E-C----CEEEEEEECHH
T ss_pred HHHHHHHHH-hCCCCHHHHHHHHHHhhCCccCcChhHHHHHHHHHHHCCCEEEEEec-c-CCC--CCeEEEEECHH
Confidence 466777775 4678888998888 69999999999999999999976332 1 122 34667788853
No 130
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=95.31 E-value=0.017 Score=45.52 Aligned_cols=53 Identities=4% Similarity=-0.025 Sum_probs=44.0
Q ss_pred HHHcCCCchHHHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 25 VRGFYSIEDSLIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 25 ~R~Fy~~e~ivIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
.+++-++--.-|+..|. ++.++=.+||+.+|+++..|.+.|..|.+.|||...
T Consensus 6 lkaL~~~~R~~IL~~L~-~g~~s~~ELa~~lglS~stVs~hL~~Le~aGLV~~~ 58 (232)
T 2qlz_A 6 FYILGNKVRRDLLSHLT-CMECYFSLLSSKVSVSSTAVAKHLKIMEREGVLQSY 58 (232)
T ss_dssp HHHHTSHHHHHHHHHHT-TTTTCSSSSCTTCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHhCCHHHHHHHHHHH-hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 34444555566888776 578899999999999999999999999999999974
No 131
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=95.30 E-value=0.039 Score=42.14 Aligned_cols=36 Identities=17% Similarity=0.320 Sum_probs=33.6
Q ss_pred CCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 43 NPCMKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 43 ~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
...+++.+||+.+|++..-||.+|..|..+|||..+
T Consensus 37 G~~L~E~~La~~lgVSRtpVREAl~~L~~eGlv~~~ 72 (222)
T 3ihu_A 37 GQRLVETDLVAHFGVGRNSVREALQRLAAEGIVDLQ 72 (222)
T ss_dssp TCEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred CCccCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe
Confidence 457889999999999999999999999999999875
No 132
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=95.30 E-value=0.026 Score=38.12 Aligned_cols=36 Identities=17% Similarity=0.317 Sum_probs=32.6
Q ss_pred CCCc-CHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 43 NPCM-KEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 43 ~~~i-~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
...+ +..+||+.+|++..-||+.|..|.++|+|..+
T Consensus 32 g~~lps~~eLa~~~~vSr~tvr~al~~L~~~Gli~~~ 68 (102)
T 1v4r_A 32 GDTLPSVADIRAQFGVAAKTVSRALAVLKSEGLVSSR 68 (102)
T ss_dssp TSBCCCHHHHHHHSSSCTTHHHHHTTTTTTSSCCEEE
T ss_pred cCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 3456 89999999999999999999999999999754
No 133
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=95.23 E-value=0.069 Score=38.37 Aligned_cols=79 Identities=11% Similarity=0.192 Sum_probs=58.6
Q ss_pred HHHHHHHHh-CCCcCHHHHHHHh-----CCChHHHHHHHHHHhhCcceeeeEeeeecCCCceeEEEEEEecchhHHHHHH
Q psy5744 34 SLIIDMLVR-NPCMKEDDICELL-----KFERKMLRARISTLKNDKIIQTRLRMETGLDGKAQKVNYYFINYQTFVNIVK 107 (157)
Q Consensus 34 ivIlD~L~~-~~~i~dedLa~~l-----~i~~k~vRkiL~~L~~d~Lv~~~~~~e~~~~gk~~~~~yw~I~y~~~~~vik 107 (157)
..|+++|.. ++.+|-+||.+.+ +++...|=+.|..|.+.|||... +. ++|.. +|-++..
T Consensus 17 ~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~---~~-~~g~~----~Y~~~~~------- 81 (139)
T 3mwm_A 17 AAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVDVL---RT-AEGES----VYRRCST------- 81 (139)
T ss_dssp HHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSEEE---EC-TTSCE----EEECCSC-------
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEEE---Ec-CCCce----EEEECCC-------
Confidence 568999886 4689999999998 79999999999999999999754 22 34422 2323311
Q ss_pred HHHHHHHHHHHHHHhhcCCCCeeecCCCCCccchhh
Q psy5744 108 YKLDVMRKRMEMEERDATSRSSFKCPRCLKTFTDLE 143 (157)
Q Consensus 108 ~rl~~m~~~L~~~~~~~~~~~~Y~Cp~C~~~Ys~ld 143 (157)
......++|..||+.+.+.+
T Consensus 82 ----------------~~~H~HliC~~Cg~v~~~~~ 101 (139)
T 3mwm_A 82 ----------------GDHHHHLVCRACGKAVEVEG 101 (139)
T ss_dssp ----------------SSCCEEEEETTTCCEEEECC
T ss_pred ----------------CCCccEEEECCCCCEeeccc
Confidence 02355799999999987753
No 134
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=95.20 E-value=0.029 Score=44.33 Aligned_cols=49 Identities=20% Similarity=0.302 Sum_probs=44.5
Q ss_pred CCchHHHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 30 SIEDSLIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 30 ~~e~ivIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
++...-||.+|..++.++-.|||+.+|++...+.++|..|.+.|+|...
T Consensus 151 ~~~~~~IL~~L~~~~~~s~~eLA~~lglsksTv~r~L~~Le~~GlV~r~ 199 (244)
T 2wte_A 151 SREEMKLLNVLYETKGTGITELAKMLDKSEKTLINKIAELKKFGILTQK 199 (244)
T ss_dssp CHHHHHHHHHHHHHTCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 4556789999888888999999999999999999999999999999875
No 135
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=95.17 E-value=0.02 Score=46.60 Aligned_cols=75 Identities=13% Similarity=0.098 Sum_probs=49.6
Q ss_pred CCCCCCCcccccchHHHHHHHHHHHHHcCCC------chHHHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcc
Q psy5744 1 MSTSDEGYVHTEVPTSLKQLSRLVVRGFYSI------EDSLIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKNDKI 74 (157)
Q Consensus 1 ~~~~~~~~~~~~ip~~~~~Lv~~v~R~Fy~~------e~ivIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~L 74 (157)
||.+..+..+...++.+..|.+.+. +|... -..-|+|.| ..+.++-+|||+.+|+++.-++++|..|...|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~l~~~~~l~i~~~l-~~~~~t~~eLA~~~g~~~~~l~r~Lr~L~~~Gl 78 (374)
T 1qzz_A 1 MSSSSPGEPLEPTDQDLDVLLKNLG-NLVTPMALRVAATLRLVDHL-LAGADTLAGLADRTDTHPQALSRLVRHLTVVGV 78 (374)
T ss_dssp ---------CCCCHHHHHHHHHTTT-CCHHHHHHHHHHHTTHHHHH-HTTCCSHHHHHHHHTCCHHHHHHHHHHHHHTTS
T ss_pred CCCCCCCCCCCCCchHHHHHHHHHH-hhHHHHHHHHHHHcChHHHH-hCCCCCHHHHHHHhCcCHHHHHHHHHHHhhCCC
Confidence 5666666666666676666655432 11111 123488888 467899999999999999999999999999999
Q ss_pred eee
Q psy5744 75 IQT 77 (157)
Q Consensus 75 v~~ 77 (157)
+..
T Consensus 79 l~~ 81 (374)
T 1qzz_A 79 LEG 81 (374)
T ss_dssp EEC
T ss_pred EEE
Confidence 986
No 136
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=95.15 E-value=0.049 Score=41.81 Aligned_cols=36 Identities=22% Similarity=0.400 Sum_probs=33.2
Q ss_pred CCCc-CHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 43 NPCM-KEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 43 ~~~i-~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
...+ +|.+||+.+|++..-||.+|..|..+|||..+
T Consensus 28 G~~LPsE~eLa~~~gVSR~tVReAL~~L~~eGlv~~~ 64 (239)
T 1hw1_A 28 GTILPAERELSELIGVTRTTLREVLQRLARDGWLTIQ 64 (239)
T ss_dssp TSBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEe
Confidence 4467 79999999999999999999999999999875
No 137
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=95.12 E-value=0.026 Score=38.66 Aligned_cols=49 Identities=10% Similarity=0.229 Sum_probs=42.8
Q ss_pred CCchHHHHHHHHhCCCcCHHHHHHHhC----CChHHHHHHHHHHhhCcceeee
Q psy5744 30 SIEDSLIIDMLVRNPCMKEDDICELLK----FERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 30 ~~e~ivIlD~L~~~~~i~dedLa~~l~----i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
++....||.+|-.++.++-.||++.++ ++...|.++|..|.+.|+|...
T Consensus 34 T~~e~~VL~~L~~~~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~KGlV~R~ 86 (99)
T 2k4b_A 34 SNAELIVMRVIWSLGEARVDEIYAQIPQELEWSLATVKTLLGRLVKKEMLSTE 86 (99)
T ss_dssp CCSCSHHHHHHHHHSCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCEEE
T ss_pred CHHHHHHHHHHHhCCCCCHHHHHHHHhcccCCCHhhHHHHHHHHHHCCCEEEE
Confidence 345678899998888899999999997 5689999999999999999864
No 138
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=95.03 E-value=0.058 Score=42.33 Aligned_cols=36 Identities=19% Similarity=0.278 Sum_probs=33.4
Q ss_pred CCCc-CHHHHHHHhCCChHHHHHHHHHHhhCcceeeeE
Q psy5744 43 NPCM-KEDDICELLKFERKMLRARISTLKNDKIIQTRL 79 (157)
Q Consensus 43 ~~~i-~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~~ 79 (157)
...+ ++.+||+.+|++..-||++|..|.++|+|.. +
T Consensus 33 g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~-~ 69 (248)
T 3f8m_A 33 GDPFPAEREIAEQFEVARETVRQALRELLIDGRVER-R 69 (248)
T ss_dssp TCBCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE-E
T ss_pred CCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe-C
Confidence 5567 8999999999999999999999999999987 5
No 139
>3qph_A TRMB, A global transcription regulator; transcriptional regulator; HET: SUC; 2.99A {Pyrococcus furiosus}
Probab=94.95 E-value=0.0027 Score=52.67 Aligned_cols=79 Identities=16% Similarity=0.092 Sum_probs=66.6
Q ss_pred HHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeeeEeeeecCCCceeEEEEEEecchhHHHHHHHHHHHHHH
Q psy5744 36 IIDMLVRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQTRLRMETGLDGKAQKVNYYFINYQTFVNIVKYKLDVMRK 115 (157)
Q Consensus 36 IlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~~~~e~~~~gk~~~~~yw~I~y~~~~~vik~rl~~m~~ 115 (157)
+.-+|++++..+-.|||+.+|++...|..+|..|.+.|||... . | +...|+-++.+.+++.++.++....+
T Consensus 23 vY~~Ll~~g~~t~~eia~~~gv~~~~Vy~~L~~L~~~GlV~~~----~---g--~p~~y~av~p~~~l~~l~~~~~~~~~ 93 (342)
T 3qph_A 23 TYWTLLVYGPSTAKEISTKSGIPYNRVYDTISSLKLRGFVTEI----E---G--TPKVYAAYSPRIAFFRFKKELEDIMK 93 (342)
T ss_dssp CSHHHHHHHHHHHSCCSSSTTSSSCSCCHHHHHHHHHTSEEEE----C---C--TTCEEEECCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE----c---C--ceeEEEEcCHHHHHHHHHHHHHHHHH
Confidence 3445677889999999999999999999999999999999864 1 1 22457789999999999999999999
Q ss_pred HHHHHHhh
Q psy5744 116 RMEMEERD 123 (157)
Q Consensus 116 ~L~~~~~~ 123 (157)
.|++.++.
T Consensus 94 ~L~~~~~~ 101 (342)
T 3qph_A 94 KLEIELNN 101 (342)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhh
Confidence 99887654
No 140
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=94.91 E-value=0.015 Score=41.09 Aligned_cols=46 Identities=13% Similarity=0.278 Sum_probs=36.3
Q ss_pred hHHHHHHHHhC--CCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 33 DSLIIDMLVRN--PCMKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 33 ~ivIlD~L~~~--~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
...||..|..+ +.++-.+||+.+|+++..+.+++..|.+.|+|...
T Consensus 43 q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~ 90 (148)
T 3jw4_A 43 QGRMIGYIYENQESGIIQKDLAQFFGRRGASITSMLQGLEKKGYIERR 90 (148)
T ss_dssp HHHHHHHHHHHTTTCCCHHHHHHC------CHHHHHHHHHHTTSBCCC
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEee
Confidence 57788888876 78999999999999999999999999999999865
No 141
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.82 E-value=0.039 Score=37.80 Aligned_cols=50 Identities=12% Similarity=0.188 Sum_probs=43.7
Q ss_pred CCchHHHHHHHHh--CCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeeeE
Q psy5744 30 SIEDSLIIDMLVR--NPCMKEDDICELLKFERKMLRARISTLKNDKIIQTRL 79 (157)
Q Consensus 30 ~~e~ivIlD~L~~--~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~~ 79 (157)
+++..+|+..+-. +..|.-.||+..+|+++..|.++|-.|+..+||+...
T Consensus 36 t~~E~lVy~~I~~aGn~GIw~kdL~~~tnL~~~~vtkiLK~LE~k~lIK~Vk 87 (95)
T 2yu3_A 36 DNQEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLESKKLIKAVK 87 (95)
T ss_dssp SHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEEC
T ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHhCCCEEEec
Confidence 4556788888776 5569999999999999999999999999999999873
No 142
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=94.79 E-value=0.058 Score=41.07 Aligned_cols=36 Identities=11% Similarity=0.202 Sum_probs=33.4
Q ss_pred CCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 43 NPCMKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 43 ~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
...+++.+||+.+|++..-||.+|..|..+|||..+
T Consensus 33 G~~L~e~~La~~lgVSRtpVREAL~~L~~eGlv~~~ 68 (218)
T 3sxy_A 33 GEKLNVRELSEKLGISFTPVRDALLQLATEGLVKVV 68 (218)
T ss_dssp TCEECHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred CCEeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe
Confidence 446899999999999999999999999999999865
No 143
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=94.78 E-value=0.042 Score=37.87 Aligned_cols=48 Identities=15% Similarity=0.309 Sum_probs=43.0
Q ss_pred CchHHHHHHHHhCCCcCHHHHHHHhC----CChHHHHHHHHHHhhCcceeee
Q psy5744 31 IEDSLIIDMLVRNPCMKEDDICELLK----FERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 31 ~e~ivIlD~L~~~~~i~dedLa~~l~----i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
+....||.+|-.++.++-.|||+.++ ++...|..+|..|.+.|+|...
T Consensus 10 ~~q~~vL~~L~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~R~ 61 (126)
T 1sd4_A 10 MAEWDVMNIIWDKKSVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRY 61 (126)
T ss_dssp HHHHHHHHHHHHSSSEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHCCceEEE
Confidence 34577889999888999999999997 5899999999999999999975
No 144
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=94.75 E-value=0.096 Score=37.85 Aligned_cols=46 Identities=11% Similarity=0.145 Sum_probs=40.7
Q ss_pred hHHHHHHHHhCCCcCHHHHHHHh-----CCChHHHHHHHHHHhhCcceeee
Q psy5744 33 DSLIIDMLVRNPCMKEDDICELL-----KFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 33 ~ivIlD~L~~~~~i~dedLa~~l-----~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
-..|+++|..++.++-+||.+.+ +++...|=+.|..|.+.|||...
T Consensus 21 R~~Il~~l~~~~h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~i 71 (145)
T 3eyy_A 21 RQLVLEAVDTLEHATPDDILGEVRKTASGINISTVYRTLELLEELGLVSHA 71 (145)
T ss_dssp HHHHHHHHHHHSSBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEEEE
Confidence 46789999875589999999988 79999999999999999999864
No 145
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=94.72 E-value=0.31 Score=34.89 Aligned_cols=47 Identities=13% Similarity=0.194 Sum_probs=41.0
Q ss_pred chHHHHHHHHhC-CCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 32 EDSLIIDMLVRN-PCMKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 32 e~ivIlD~L~~~-~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
....||-.|.++ +.++-.+||+.+|+++..+-+++..|.+.|+|...
T Consensus 32 ~q~~vL~~L~~~~~~~~~~eLa~~l~~~~~tvs~~v~~Le~~GlV~R~ 79 (151)
T 4aik_A 32 THWVTLYNINRLPPEQSQIQLAKAIGIEQPSLVRTLDQLEEKGLITRH 79 (151)
T ss_dssp HHHHHHHHHHHSCTTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHCcCHHHHHHHHHHHHhCCCeEee
Confidence 356788888764 56888999999999999999999999999999875
No 146
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=94.70 E-value=0.59 Score=32.49 Aligned_cols=85 Identities=11% Similarity=0.182 Sum_probs=56.5
Q ss_pred HHHHHHHHhCCCcCHHHHHHHh------CCChHHHHHHHHHHhhCcceeeeEeeeecCCCceeEEEEEEecchh--HHHH
Q psy5744 34 SLIIDMLVRNPCMKEDDICELL------KFERKMLRARISTLKNDKIIQTRLRMETGLDGKAQKVNYYFINYQT--FVNI 105 (157)
Q Consensus 34 ivIlD~L~~~~~i~dedLa~~l------~i~~k~vRkiL~~L~~d~Lv~~~~~~e~~~~gk~~~~~yw~I~y~~--~~~v 105 (157)
.+||-.|. ++..+=-+|++.+ +++...|-.+|.+|+++|+|...... . ++| ..+.||.|.-.. ....
T Consensus 14 ~~IL~lL~-~~p~~Gyei~~~l~~~g~~~is~gtlY~~L~rLe~~GlI~~~~~~-~-~~g--~~rk~Y~LT~~G~~~l~~ 88 (117)
T 4esf_A 14 GCVLEIIS-RRETYGYEITRHLNDLGFTEVVEGTVYTILVRLEKKKLVNIEKKP-S-DMG--PPRKFYSLNEAGRQELEL 88 (117)
T ss_dssp HHHHHHHH-HSCBCHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHTTCEEEEEEC---------CEEEEEECHHHHHHHHH
T ss_pred HHHHHHHH-cCCCCHHHHHHHHHHcCCCCCCccHHHHHHHHHHHCCCEEEEeec-C-CCC--CCceEEEECHHHHHHHHH
Confidence 45665554 5778899999998 89999999999999999999987332 1 222 346788888532 2333
Q ss_pred HHHHHHHHHHHHHHHHhh
Q psy5744 106 VKYKLDVMRKRMEMEERD 123 (157)
Q Consensus 106 ik~rl~~m~~~L~~~~~~ 123 (157)
.......+.+.++.-+..
T Consensus 89 ~~~~~~~~~~~i~~il~~ 106 (117)
T 4esf_A 89 FWKKWDFVSSKINVLKSS 106 (117)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcc
Confidence 334555555556555433
No 147
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=94.68 E-value=0.053 Score=35.90 Aligned_cols=42 Identities=7% Similarity=-0.003 Sum_probs=37.7
Q ss_pred HHHHHHHhCC-CcCHHHHHHHhCCChHH-HHHHHHHHhhCccee
Q psy5744 35 LIIDMLVRNP-CMKEDDICELLKFERKM-LRARISTLKNDKIIQ 76 (157)
Q Consensus 35 vIlD~L~~~~-~i~dedLa~~l~i~~k~-vRkiL~~L~~d~Lv~ 76 (157)
.+|..|..++ .++-.+||+.+|+++.. +.+++..|.+.|+|.
T Consensus 19 ~~L~~l~~~~~~~t~~eLa~~l~is~~t~vs~~l~~Le~~Glv~ 62 (95)
T 2pg4_A 19 PTLLEFEKKGYEPSLAEIVKASGVSEKTFFMGLKDRLIRAGLVK 62 (95)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHCCCHHHHHTTHHHHHHHTTSEE
T ss_pred HHHHHHHhcCCCCCHHHHHHHHCCCchHHHHHHHHHHHHCCCee
Confidence 3565666676 89999999999999999 999999999999999
No 148
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=94.60 E-value=0.089 Score=41.91 Aligned_cols=37 Identities=11% Similarity=0.119 Sum_probs=33.3
Q ss_pred CCCc-CHHHHHHHhCCChHHHHHHHHHHhhCcceeeeE
Q psy5744 43 NPCM-KEDDICELLKFERKMLRARISTLKNDKIIQTRL 79 (157)
Q Consensus 43 ~~~i-~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~~ 79 (157)
...+ ++.+||+.+|++..-||++|..|.++|+|..++
T Consensus 50 g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~~ 87 (272)
T 3eet_A 50 HTRLPSQARIREEYGVSDTVALEARKVLMAEGLVEGRS 87 (272)
T ss_dssp TSBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECC
T ss_pred cCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEec
Confidence 3456 899999999999999999999999999998754
No 149
>3eyi_A Z-DNA-binding protein 1; alternative splicing, DNA-binding, polymorphism, DNA binding protein/Z-DNA complex, DNA binding protein/DNA complex; 1.45A {Homo sapiens} PDB: 2l4m_A
Probab=94.54 E-value=0.026 Score=36.60 Aligned_cols=58 Identities=17% Similarity=0.182 Sum_probs=44.6
Q ss_pred HHHHHHHHhCCCcCHHHHHHHhCCChH-HHHHHHHHHhhCcceeeeEeeeecCCCceeEEEEEEe
Q psy5744 34 SLIIDMLVRNPCMKEDDICELLKFERK-MLRARISTLKNDKIIQTRLRMETGLDGKAQKVNYYFI 97 (157)
Q Consensus 34 ivIlD~L~~~~~i~dedLa~~l~i~~k-~vRkiL~~L~~d~Lv~~~~~~e~~~~gk~~~~~yw~I 97 (157)
-.|+++|-.+|.-+-=.||+.||+... +|+..|+.|+..+++..- | ..+.|..|=|.|
T Consensus 13 e~I~~fL~~~Gp~~AL~IAK~LGlktAK~VNp~LY~m~~~~lL~~D---e---k~~~W~iy~~~~ 71 (72)
T 3eyi_A 13 EDIYRFLKDNGPQRALVIAQALGMRTAKDVNRDLYRMKSRHLLDMD---E---QSKAWTIYRWTI 71 (72)
T ss_dssp HHHHHHHHHHCSEEHHHHHHHTTCCSGGGTHHHHHHHHHTTSEEEC---T---TTCEEEEC----
T ss_pred HHHHHHHHHcCCchHHHHHHHhCcchhhhcCHHHHHHHHccCcCCC---C---CCCceeEEEeee
Confidence 458899988999999999999999875 599999999999999642 2 224677777765
No 150
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=94.53 E-value=0.12 Score=37.62 Aligned_cols=79 Identities=11% Similarity=0.251 Sum_probs=58.8
Q ss_pred hHHHHHHHHh-C-CCcCHHHHHHHh-----CCChHHHHHHHHHHhhCcceeeeEeeeecCCCceeEEEEEEecchhHHHH
Q psy5744 33 DSLIIDMLVR-N-PCMKEDDICELL-----KFERKMLRARISTLKNDKIIQTRLRMETGLDGKAQKVNYYFINYQTFVNI 105 (157)
Q Consensus 33 ~ivIlD~L~~-~-~~i~dedLa~~l-----~i~~k~vRkiL~~L~~d~Lv~~~~~~e~~~~gk~~~~~yw~I~y~~~~~v 105 (157)
-..|+++|.. + +.+|-+||.+.+ +++...|=+.|..|.+.|||... +. ++|. .+|-++..
T Consensus 19 R~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~---~~-~~~~----~~Y~~~~~----- 85 (150)
T 2w57_A 19 RLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVTRH---HF-EGGK----SVFELSTQ----- 85 (150)
T ss_dssp HHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEE---EC-GGGC----EEEEECCS-----
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEEEE---Ee-CCCc----eEEEecCC-----
Confidence 4678999885 3 679999999999 89999999999999999999865 22 2332 22222210
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCeeecCCCCCccchhh
Q psy5744 106 VKYKLDVMRKRMEMEERDATSRSSFKCPRCLKTFTDLE 143 (157)
Q Consensus 106 ik~rl~~m~~~L~~~~~~~~~~~~Y~Cp~C~~~Ys~ld 143 (157)
.....++|..||+.+.+.+
T Consensus 86 -------------------~~H~HliC~~Cg~v~~~~~ 104 (150)
T 2w57_A 86 -------------------HHHDHLVCLDCGEVIEFSD 104 (150)
T ss_dssp -------------------SCCEEEEETTTCCEEEECC
T ss_pred -------------------CceeEEEECCCCCEEEecc
Confidence 2345799999999998743
No 151
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=94.51 E-value=0.11 Score=40.66 Aligned_cols=36 Identities=19% Similarity=0.303 Sum_probs=32.8
Q ss_pred CCCc-CHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 43 NPCM-KEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 43 ~~~i-~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
+..+ ++.+||+.+|++..-||++|..|.++|+|..+
T Consensus 31 g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~ 67 (243)
T 2wv0_A 31 DMPLPSEREYAEQFGISRMTVRQALSNLVNEGLLYRL 67 (243)
T ss_dssp TCBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred cCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEe
Confidence 4456 89999999999999999999999999999864
No 152
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=94.47 E-value=0.092 Score=40.86 Aligned_cols=36 Identities=6% Similarity=0.109 Sum_probs=32.9
Q ss_pred CCCc-CHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 43 NPCM-KEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 43 ~~~i-~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
+..+ ++.+||+.+|++..-||++|..|.++|+|..+
T Consensus 26 g~~lPse~~La~~~~vSr~tvr~Al~~L~~~g~i~~~ 62 (239)
T 3bwg_A 26 GDKLPVLETLMAQFEVSKSTITKSLELLEQKGAIFQV 62 (239)
T ss_dssp TCBCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEe
Confidence 3457 89999999999999999999999999999865
No 153
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=94.46 E-value=0.078 Score=41.30 Aligned_cols=36 Identities=17% Similarity=0.314 Sum_probs=31.6
Q ss_pred CCCc-CHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 43 NPCM-KEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 43 ~~~i-~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
...+ ++.+||+.+|++..-||++|..|.++|+|..+
T Consensus 30 g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~ 66 (236)
T 3edp_A 30 GMLMPNETALQEIYSSSRTTIRRAVDLLVEEGLVVRK 66 (236)
T ss_dssp CC--CCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 3456 89999999999999999999999999999875
No 154
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=94.46 E-value=0.1 Score=35.20 Aligned_cols=35 Identities=14% Similarity=0.072 Sum_probs=32.9
Q ss_pred CCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 43 NPCMKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 43 ~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
++ ++-.+||..+|++...+++.+..|++.|||...
T Consensus 19 ~~-~~~t~La~~~~ls~~~~~~~l~~L~~~GLI~~~ 53 (95)
T 1r7j_A 19 SG-SPKTRIMYGANLSYALTGRYIKMLMDLEIIRQE 53 (95)
T ss_dssp TC-BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred cC-CCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEE
Confidence 56 999999999999999999999999999999864
No 155
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=94.42 E-value=0.11 Score=40.29 Aligned_cols=36 Identities=25% Similarity=0.515 Sum_probs=33.3
Q ss_pred CCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 43 NPCMKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 43 ~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
...+++.+||+.+|++..-||.+|..|..+|||..+
T Consensus 49 G~~L~e~~La~~lgVSRtpVREAL~~L~~eGlv~~~ 84 (239)
T 2hs5_A 49 GARLSEPDICAALDVSRNTVREAFQILIEDRLVAHE 84 (239)
T ss_dssp TCEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCEeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe
Confidence 346899999999999999999999999999999875
No 156
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=94.21 E-value=0.039 Score=37.91 Aligned_cols=47 Identities=15% Similarity=0.314 Sum_probs=41.9
Q ss_pred chHHHHHHHHhCCCcCHHHHHHHhC----CChHHHHHHHHHHhhCcceeee
Q psy5744 32 EDSLIIDMLVRNPCMKEDDICELLK----FERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 32 e~ivIlD~L~~~~~i~dedLa~~l~----i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
....||.+|..++.++-.|||+.++ ++...|.++|..|.+.|+|...
T Consensus 11 ~~~~vL~~l~~~~~~t~~ela~~l~~~~~~s~~tv~~~l~~L~~~Glv~r~ 61 (123)
T 1okr_A 11 AEWEVMNIIWMKKYASANNIIEEIQMQKDWSPKTIRTLITRLYKKGFIDRK 61 (123)
T ss_dssp HHHHHHHHHHHHSSEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHhCCCcCHHHHHHHHhccCCCcHhhHHHHHHHHHHCCCeEEE
Confidence 3566888888788899999999999 7899999999999999999865
No 157
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=94.19 E-value=0.043 Score=36.50 Aligned_cols=48 Identities=8% Similarity=0.078 Sum_probs=39.6
Q ss_pred cCCCchHHHHHHHHh-CCC---cCHHHHHHHhCCChHHHHHHHHHHhhCcce
Q psy5744 28 FYSIEDSLIIDMLVR-NPC---MKEDDICELLKFERKMLRARISTLKNDKII 75 (157)
Q Consensus 28 Fy~~e~ivIlD~L~~-~~~---i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv 75 (157)
+.......||..|.. .+. ++-.+||+.+|++...+.+++..|.+.|+|
T Consensus 9 ~l~~~~~~iL~~l~~~~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv 60 (95)
T 2qvo_A 9 LFKEKALEILMTIYYESLGGNDVYIQYIASKVNSPHSYVWLIIKKFEEAKMV 60 (95)
T ss_dssp HSCHHHHHHHHHHHHHHHTTCCEEHHHHHHHSSSCHHHHHHHHHHHHHTTSE
T ss_pred CCchhHHHHHHHHHHccCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCcCc
Confidence 334445667777764 344 999999999999999999999999999999
No 158
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=94.19 E-value=0.84 Score=31.51 Aligned_cols=84 Identities=15% Similarity=0.153 Sum_probs=55.1
Q ss_pred HHHHHHHHhCCCcCHHHHHHHh--------CCChHHHHHHHHHHhhCcceeeeEeeeecCCCceeEEEEEEecchh--HH
Q psy5744 34 SLIIDMLVRNPCMKEDDICELL--------KFERKMLRARISTLKNDKIIQTRLRMETGLDGKAQKVNYYFINYQT--FV 103 (157)
Q Consensus 34 ivIlD~L~~~~~i~dedLa~~l--------~i~~k~vRkiL~~L~~d~Lv~~~~~~e~~~~gk~~~~~yw~I~y~~--~~ 103 (157)
..||-+|. .+..+--+|++.+ +++...|-.+|.+|+++|+|...... . ++| ..+.||.|--.. ..
T Consensus 15 ~~IL~~L~-~~~~~Gyei~~~l~~~~~~~~~i~~gtly~~L~rLe~~GlI~~~~~~-~-~~~--~~rk~Y~LT~~G~~~l 89 (116)
T 3f8b_A 15 VILLNVLK-QGDNYVYGIIKQVKEASNGEMELNEATLYTIFKRLEKDGIISSYWGD-E-SQG--GRRKYYRLTEIGHENM 89 (116)
T ss_dssp HHHHHHHH-HCCBCHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHHHTTSEEEEEEC--------CCEEEEEECHHHHHHH
T ss_pred HHHHHHHH-hCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHCCCEEEEeec-c-CCC--CCceEEEECHHHHHHH
Confidence 45666655 5678888888887 79999999999999999999976321 1 232 346788887533 23
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q psy5744 104 NIVKYKLDVMRKRMEMEER 122 (157)
Q Consensus 104 ~vik~rl~~m~~~L~~~~~ 122 (157)
.........+.+.++.-+.
T Consensus 90 ~~~~~~~~~~~~~i~~il~ 108 (116)
T 3f8b_A 90 RLAFESWSRVDKIIENLEA 108 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHc
Confidence 3333444555555555443
No 159
>4esb_A Transcriptional regulator, PADR family; DNA binding protein, HTH fold; 2.50A {Bacillus cereus}
Probab=93.97 E-value=0.62 Score=32.24 Aligned_cols=83 Identities=13% Similarity=0.195 Sum_probs=56.9
Q ss_pred HHHHHHHHhCCCcCHHHHHHHhC------CChHHHHHHHHHHhhCcceeeeEeeeecCCCceeEEEEEEecchh--HHHH
Q psy5744 34 SLIIDMLVRNPCMKEDDICELLK------FERKMLRARISTLKNDKIIQTRLRMETGLDGKAQKVNYYFINYQT--FVNI 105 (157)
Q Consensus 34 ivIlD~L~~~~~i~dedLa~~l~------i~~k~vRkiL~~L~~d~Lv~~~~~~e~~~~gk~~~~~yw~I~y~~--~~~v 105 (157)
.+||-+|. .+..+--+|++.+. ++...|-.+|.+|+++|+|...... . ++| ..+.||.|.-.. ....
T Consensus 12 ~~IL~~L~-~~~~~Gyei~~~l~~~~~~~is~gtlY~~L~rLe~~GlI~~~~~~-~-~~g--~~rk~Y~LT~~G~~~l~~ 86 (115)
T 4esb_A 12 GCILYIIS-QEEVYGYELSTKLNKHGFTFVSEGSIYPLLLRMQKEKLIEGTLKA-S-SLG--PKRKYYHITDKGLEQLEE 86 (115)
T ss_dssp HHHHHHHH-HSCEEHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHTTSEEEEEEE-C-TTS--CEEEEEEECHHHHHHHHH
T ss_pred HHHHHHHH-cCCCCHHHHHHHHHHcCCCCCCcChHHHHHHHHHHCCCeEEEeee-c-CCC--CCcEEEEECHHHHHHHHH
Confidence 45666665 56788899999984 9999999999999999999986322 1 233 456788888533 2333
Q ss_pred HHHHHHHHHHHHHHHH
Q psy5744 106 VKYKLDVMRKRMEMEE 121 (157)
Q Consensus 106 ik~rl~~m~~~L~~~~ 121 (157)
.......+.+.++.-+
T Consensus 87 ~~~~~~~~~~~i~~il 102 (115)
T 4esb_A 87 FKQSWGMVSTTVNNLL 102 (115)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3335555555555544
No 160
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=93.94 E-value=0.17 Score=42.50 Aligned_cols=46 Identities=17% Similarity=0.380 Sum_probs=43.0
Q ss_pred hHHHHHHHHhC--CCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 33 DSLIIDMLVRN--PCMKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 33 ~ivIlD~L~~~--~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
...||-.|-++ +.++-.+||+.+++++..+-+++.+|++.|||.++
T Consensus 406 q~~vl~~l~~~~~~~~~~~~l~~~~~~~~~~~t~~~~~le~~g~v~r~ 453 (487)
T 1hsj_A 406 EIYILNHILRSESNEISSKEIAKCSEFKPYYLTKALQKLKDLKLLSKK 453 (487)
T ss_dssp HHHHHHHHHTCSCSEEEHHHHHHSSCCCHHHHHHHHHHHHTTTTSCCE
T ss_pred HHHHHHHHHhCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeec
Confidence 57788888888 88999999999999999999999999999999976
No 161
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=93.82 E-value=0.12 Score=40.19 Aligned_cols=46 Identities=17% Similarity=0.296 Sum_probs=40.9
Q ss_pred hHHHHHHHHhCC-CcCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 33 DSLIIDMLVRNP-CMKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 33 ~ivIlD~L~~~~-~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
.+-||++|..++ .++=.|||+.+|++...+.++|..|.+.|+|...
T Consensus 10 ~l~iL~~l~~~~~~~~~~ela~~~gl~~stv~r~l~~L~~~G~v~~~ 56 (249)
T 1mkm_A 10 AFEILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVLEEKGFVLRK 56 (249)
T ss_dssp HHHHHHHHHHCSSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEC
Confidence 456888888764 7999999999999999999999999999999853
No 162
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=93.82 E-value=0.1 Score=36.94 Aligned_cols=48 Identities=13% Similarity=0.131 Sum_probs=42.8
Q ss_pred CchHHHHHHHHh-CCCcCHHHHHHHhC----CChHHHHHHHHHHhhCcceeee
Q psy5744 31 IEDSLIIDMLVR-NPCMKEDDICELLK----FERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 31 ~e~ivIlD~L~~-~~~i~dedLa~~l~----i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
+....||.+|-. ++.++-.||++.++ ++...|.++|..|.+.|+|...
T Consensus 9 ~~e~~vL~~L~~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~r~ 61 (138)
T 2g9w_A 9 DLERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMAVLQRLAKKNLVLQI 61 (138)
T ss_dssp HHHHHHHHHHHTCSSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHhccCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 345678999987 58999999999998 8999999999999999999865
No 163
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=93.79 E-value=0.007 Score=44.48 Aligned_cols=50 Identities=14% Similarity=0.177 Sum_probs=42.2
Q ss_pred CCCchHHHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 29 YSIEDSLIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 29 y~~e~ivIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
++.-.-.|++.|..++.+++.+||+.+|++..-||+.+..|.++|+|...
T Consensus 11 ~d~l~~~Il~~l~~~~~ls~~eLa~~lgvSr~~vr~al~~L~~~Gli~~~ 60 (163)
T 2gqq_A 11 LDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQGY 60 (163)
T ss_dssp CCSHHHHHHHHHHHCSSCCTTGGGTSSSCCTTTSSSTHHHHHHHTSEEEE
T ss_pred hhHHHHHHHHHHHhCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEE
Confidence 44444567776666888999999999999999999999999999999854
No 164
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=93.76 E-value=0.28 Score=34.88 Aligned_cols=46 Identities=13% Similarity=0.122 Sum_probs=39.4
Q ss_pred hHHHHHHHHh--CCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 33 DSLIIDMLVR--NPCMKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 33 ~ivIlD~L~~--~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
..-||-.|.. ++.++-.+||+.+++++..+-+++.+|.+.|+|...
T Consensus 37 q~~vL~~L~~~~~~~~t~~eLa~~l~~~~~tvs~~v~~Le~~Glv~r~ 84 (147)
T 4b8x_A 37 RYEALVLLTFSKSGELPMSKIGERLMVHPTSVTNTVDRLVRSGLVAKR 84 (147)
T ss_dssp HHHHHHHHHTSGGGEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHhCCCEEEe
Confidence 4556666653 467999999999999999999999999999999976
No 165
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=93.71 E-value=0.0067 Score=37.16 Aligned_cols=32 Identities=50% Similarity=0.760 Sum_probs=22.3
Q ss_pred CCCCeeecCCCCCccchhhhhhccCC--CCcccC
Q psy5744 125 TSRSSFKCPRCLKTFTDLEPCLLVLW--CACPCK 156 (157)
Q Consensus 125 ~~~~~Y~Cp~C~~~Ys~lda~~L~d~--~~F~C~ 156 (157)
.+...|.|+.|++.|+...++..... ..|.|+
T Consensus 10 ~~~k~~~C~~C~k~F~~~~~l~~~H~~~k~~~C~ 43 (62)
T 1vd4_A 10 TNRASFKCPVCSSTFTDLEANQLFDPMTGTFRCT 43 (62)
T ss_dssp CSSSEEECSSSCCEEEHHHHHHHEETTTTEEBCS
T ss_pred CCCCCccCCCCCchhccHHHhHhhcCCCCCEECC
Confidence 34567899999999988877764432 357775
No 166
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=93.69 E-value=0.18 Score=39.50 Aligned_cols=42 Identities=12% Similarity=0.252 Sum_probs=36.9
Q ss_pred HHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceee
Q psy5744 35 LIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQT 77 (157)
Q Consensus 35 vIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~ 77 (157)
.|+-. +.++..+-++||+.+|+++..|+..|..|.+.|+|..
T Consensus 169 ~l~~~-l~~~~~t~~~la~~~~l~~~~V~~~l~~L~~~~~v~~ 210 (232)
T 2qlz_A 169 ILHYL-LLNGRATVEELSDRLNLKEREVREKISEMARFVPVKI 210 (232)
T ss_dssp HHHHH-HHSSEEEHHHHHHHHTCCHHHHHHHHHHHTTTSCEEE
T ss_pred HHHHH-HhcCCCCHHHHHHHhCcCHHHHHHHHHHHHhcCCeEE
Confidence 34434 5589999999999999999999999999999999983
No 167
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=93.66 E-value=0.1 Score=40.56 Aligned_cols=46 Identities=15% Similarity=0.264 Sum_probs=40.9
Q ss_pred hHHHHHHHHhC-CCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 33 DSLIIDMLVRN-PCMKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 33 ~ivIlD~L~~~-~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
.+-||++|..+ +.++=.|||+.+|++...+.++|..|.+.|+|...
T Consensus 8 ~l~iL~~l~~~~~~~s~~ela~~~gl~~stv~r~l~~L~~~G~v~~~ 54 (241)
T 2xrn_A 8 AASIMRALGSHPHGLSLAAIAQLVGLPRSTVQRIINALEEEFLVEAL 54 (241)
T ss_dssp HHHHHHHHHTCTTCEEHHHHHHHTTSCHHHHHHHHHHHHTTTSEEEC
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 45788988875 47999999999999999999999999999999853
No 168
>3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0
Probab=93.65 E-value=1.2 Score=30.89 Aligned_cols=83 Identities=8% Similarity=0.153 Sum_probs=55.8
Q ss_pred HHHHHHHHhCCCcCHHHHHHHh------CCChHHHHHHHHHHhhCcceeeeEeeeecCCCceeEEEEEEecchh--HHHH
Q psy5744 34 SLIIDMLVRNPCMKEDDICELL------KFERKMLRARISTLKNDKIIQTRLRMETGLDGKAQKVNYYFINYQT--FVNI 105 (157)
Q Consensus 34 ivIlD~L~~~~~i~dedLa~~l------~i~~k~vRkiL~~L~~d~Lv~~~~~~e~~~~gk~~~~~yw~I~y~~--~~~v 105 (157)
.+||-.|. .+..+=-+|++.+ +++...|-.+|.+|+++|+|...... . ++| ..+.||.|.-.. ....
T Consensus 16 ~~IL~lL~-~~p~~Gyei~~~l~~~g~~~is~gtlY~~L~rLe~~GlI~~~~~~-~-~~g--~~rk~Y~lT~~G~~~l~~ 90 (116)
T 3hhh_A 16 GLVLAIIQ-RKETYGYEITKILNDQGFTEIVEGTVYTILLRLEKNQWVIAEKKP-S-EKG--PMRKFYRLTSSGEAELAD 90 (116)
T ss_dssp HHHHHHHH-HSCBCHHHHHHHHHTTSCSSCCHHHHHHHHHHHHHTTSEEEEEEE-C-C----CEEEEEEECHHHHHHHHH
T ss_pred HHHHHHHh-cCCCCHHHHHHHHHHcCCCCCCccHHHHHHHHHHHCCCEEEEeee-c-CCC--CCceEEEECHHHHHHHHH
Confidence 45666665 5678889999998 79999999999999999999987332 1 232 446788888532 2223
Q ss_pred HHHHHHHHHHHHHHHH
Q psy5744 106 VKYKLDVMRKRMEMEE 121 (157)
Q Consensus 106 ik~rl~~m~~~L~~~~ 121 (157)
.......+.+.++.-+
T Consensus 91 ~~~~~~~~~~~i~~il 106 (116)
T 3hhh_A 91 FWQRWTLLSKQVNKMK 106 (116)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344445555555444
No 169
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=93.59 E-value=0.035 Score=39.29 Aligned_cols=35 Identities=6% Similarity=0.189 Sum_probs=30.9
Q ss_pred CCc-CHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 44 PCM-KEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 44 ~~i-~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
..+ ++.+||+.+|++..-||+++..|..+|+|...
T Consensus 33 ~~lPs~~~La~~~~vSr~tvr~Al~~L~~~G~i~~~ 68 (126)
T 3ic7_A 33 GRIPSVREYASIVEVNANTVMRSYEYLQSQEVIYNK 68 (126)
T ss_dssp SEECCTTTTTTCC-CCSGGGHHHHHHHHTTTSEEEE
T ss_pred CcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEE
Confidence 345 89999999999999999999999999999865
No 170
>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61
Probab=93.58 E-value=1.1 Score=30.86 Aligned_cols=62 Identities=15% Similarity=0.126 Sum_probs=46.4
Q ss_pred hHHHHHHHHhCCCcCHHHHHHHh------C--CCh-HHHHHHHHHHhhCcceeeeEeeeecCCCceeEEEEEEecch
Q psy5744 33 DSLIIDMLVRNPCMKEDDICELL------K--FER-KMLRARISTLKNDKIIQTRLRMETGLDGKAQKVNYYFINYQ 100 (157)
Q Consensus 33 ~ivIlD~L~~~~~i~dedLa~~l------~--i~~-k~vRkiL~~L~~d~Lv~~~~~~e~~~~gk~~~~~yw~I~y~ 100 (157)
...||.+|. ++.++-.+|++.+ + +++ ..|-.+|.+|+++|+|...... .+| ..+.+|.|.-.
T Consensus 15 ~~~IL~~L~-~~~~~gyel~~~l~~~g~~~~~is~~~tly~~L~~Le~~GlI~~~~~~---~~~--~~r~~Y~LT~~ 85 (118)
T 2esh_A 15 ASTILLLVA-EKPSHGYELAERLAEFGIEIPGIGHMGNIYRVLADLEESGFLSTEWDT---TVS--PPRKIYRITPQ 85 (118)
T ss_dssp HHHHHHHHH-HSCBCHHHHHHHHHTTCCSSTTCCCCCCHHHHHHHHHHTTSEEEEEEC---SSS--SCEEEEEECHH
T ss_pred HHHHHHHHH-cCCCCHHHHHHHHHHhCCcccCCCCcchHHHHHHHHHHCCCeEEEeec---CCC--CCceEEEEChH
Confidence 356777765 4678999999999 3 899 9999999999999999976321 132 33566788753
No 171
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=93.55 E-value=0.17 Score=37.28 Aligned_cols=34 Identities=9% Similarity=0.239 Sum_probs=32.2
Q ss_pred CcCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 45 CMKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 45 ~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
.++-++||..+|+++..|.++|.+|+++|+|...
T Consensus 169 ~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~ 202 (220)
T 3dv8_A 169 KITHETIANHLGSHREVITRMLRYFQVEGLVKLS 202 (220)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEeC
Confidence 6899999999999999999999999999999864
No 172
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=93.52 E-value=0.16 Score=39.12 Aligned_cols=35 Identities=26% Similarity=0.313 Sum_probs=32.2
Q ss_pred CCCc-CHHHHHHHhCCChHHHHHHHHHHhhCcceee
Q psy5744 43 NPCM-KEDDICELLKFERKMLRARISTLKNDKIIQT 77 (157)
Q Consensus 43 ~~~i-~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~ 77 (157)
...+ +|.+||+.+|++..-||.+|..|..+|||..
T Consensus 25 G~~LpsE~~La~~lgVSRtpVREAL~~L~~~GlV~~ 60 (239)
T 2di3_A 25 GDHLPSERALSETLGVSRSSLREALRVLEALGTIST 60 (239)
T ss_dssp TCBCCCHHHHHHHHTCCHHHHHHHHHHHHHHTSEEC
T ss_pred CCcCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEe
Confidence 3467 6889999999999999999999999999997
No 173
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=93.48 E-value=0.31 Score=38.38 Aligned_cols=47 Identities=11% Similarity=0.159 Sum_probs=42.1
Q ss_pred chHHHHHHHHhCC--CcCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 32 EDSLIIDMLVRNP--CMKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 32 e~ivIlD~L~~~~--~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
....||..|.+++ .++-.|||+.+++++..+-+++.+|++.|+|...
T Consensus 159 ~q~~vL~~L~~~~~~~~t~~eLa~~l~i~~~tvt~~v~rLe~~GlV~R~ 207 (250)
T 1p4x_A 159 VEFTILAIITSQNKNIVLLKDLIETIHHKYPQTVRALNNLKKQGYLIKE 207 (250)
T ss_dssp HHHHHHHHHHTTTTCCEEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEEE
T ss_pred HHHHHHHHHHhCCCCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEEee
Confidence 3577888888764 5999999999999999999999999999999976
No 174
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=93.34 E-value=0.12 Score=39.62 Aligned_cols=37 Identities=11% Similarity=0.300 Sum_probs=34.6
Q ss_pred hCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 42 RNPCMKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 42 ~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
.++.++-.|||+.+|+++..|.+++.+|.++|||.+.
T Consensus 17 ~~~~~~~~~lA~~l~vs~~tvs~~l~~Le~~GlV~r~ 53 (214)
T 3hrs_A 17 RHNKITNKEIAQLMQVSPPAVTEMMKKLLAEELLIKD 53 (214)
T ss_dssp SCSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCCCcCHHHHHHHHCCChhHHHHHHHHHHHCCCEEEe
Confidence 3678999999999999999999999999999999875
No 175
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=93.30 E-value=0.27 Score=35.12 Aligned_cols=44 Identities=9% Similarity=0.246 Sum_probs=36.0
Q ss_pred hHHHHHHHHhC-----CCcCHHHHHHHhCCChHHHHHHHHHHhhCccee
Q psy5744 33 DSLIIDMLVRN-----PCMKEDDICELLKFERKMLRARISTLKNDKIIQ 76 (157)
Q Consensus 33 ~ivIlD~L~~~-----~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~ 76 (157)
..-||-.|..+ +.++--+||+.+++++..+-+++..|++.|||.
T Consensus 35 q~~vL~~l~~~~~~~~~~~t~~eLa~~l~~~~~tvsr~v~~Le~~glVr 83 (148)
T 4fx0_A 35 QFSTLAVISLSEGSAGIDLTMSELAARIGVERTTLTRNLEVMRRDGLVR 83 (148)
T ss_dssp HHHHHHHHHC---------CHHHHHHHHTCCHHHHHHHHHHHHHTTSBC
T ss_pred HHHHHHHHHHhcCCCCCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEE
Confidence 56677777754 348999999999999999999999999999993
No 176
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=93.29 E-value=0.14 Score=41.25 Aligned_cols=44 Identities=16% Similarity=0.173 Sum_probs=37.7
Q ss_pred HHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 35 LIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 35 vIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
..+-.|..++.++-.|||+.||++.-.||+.|..|++.|+|+.+
T Consensus 11 ~~ia~l~~~~~~~~~ela~~l~vS~~tIrRdL~~l~~~G~v~ir 54 (315)
T 2w48_A 11 VKIAQLYYEQDMTQAQIARELGIYRTTISRLLKRGREQGIVTIA 54 (315)
T ss_dssp HHHHHHHHTSCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEE
Confidence 33445556778999999999999999999999999999999843
No 177
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=93.21 E-value=1.3 Score=30.01 Aligned_cols=84 Identities=13% Similarity=0.214 Sum_probs=56.1
Q ss_pred HHHHHHHHhCCCcCHHHHHHHh----CCChHHHHHHHHHHhhCcceeeeEeeeecCCCceeEEEEEEecchh--HHHHHH
Q psy5744 34 SLIIDMLVRNPCMKEDDICELL----KFERKMLRARISTLKNDKIIQTRLRMETGLDGKAQKVNYYFINYQT--FVNIVK 107 (157)
Q Consensus 34 ivIlD~L~~~~~i~dedLa~~l----~i~~k~vRkiL~~L~~d~Lv~~~~~~e~~~~gk~~~~~yw~I~y~~--~~~vik 107 (157)
..||-.|.. +..+-.+|++.+ +++...|-.+|.+|+++|+|..... . .+| ..+.||.|.-.. ......
T Consensus 12 ~~IL~~L~~-~~~~gyel~~~l~~~~~i~~~tly~~L~~Le~~GlI~~~~~--~-~~~--r~r~~y~LT~~G~~~l~~~~ 85 (108)
T 3l7w_A 12 YLILAIVSK-HDSYGYDISQTIKLIASIKESTLYPILKKLEKAGYLSTYTQ--E-HQG--RRRKYYHLTDSGEKHLVYLT 85 (108)
T ss_dssp HHHHHHHHH-SCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEEEE--E-ETT--EEEEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHc-CCCcHHHHHHHHHHHhCCCcChHHHHHHHHHHCCCeEEEee--c-CCC--CcceEEEECHHHHHHHHHHH
Confidence 346666654 566777777774 8999999999999999999997632 2 143 456788887532 333444
Q ss_pred HHHHHHHHHHHHHHhh
Q psy5744 108 YKLDVMRKRMEMEERD 123 (157)
Q Consensus 108 ~rl~~m~~~L~~~~~~ 123 (157)
.....+.+.+++-+..
T Consensus 86 ~~~~~~~~~i~~~l~~ 101 (108)
T 3l7w_A 86 KEWSVYKMTIDGIVEG 101 (108)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHCc
Confidence 4556666666655533
No 178
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=93.05 E-value=0.097 Score=38.31 Aligned_cols=33 Identities=12% Similarity=0.409 Sum_probs=31.4
Q ss_pred cCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 46 MKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 46 i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
++-++||..+|+.+..|.++|.+|+++|+|...
T Consensus 165 ~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~ 197 (207)
T 2oz6_A 165 ITRQEIGRIVGCSREMVGRVLKSLEEQGLVHVK 197 (207)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEec
Confidence 789999999999999999999999999999865
No 179
>3ri2_A Transcriptional regulator, PADR-like family; PSI-biology, midwest center for structural genomics, MCSG, transcription regulator; 2.10A {Eggerthella lenta} PDB: 4ejo_A
Probab=93.03 E-value=1.6 Score=30.62 Aligned_cols=99 Identities=12% Similarity=0.115 Sum_probs=64.7
Q ss_pred hHHHHHHHHHHHHHcCCCchHHHHHHHHhCCCcCHHHHHHHh-----CCChHHHHHHHHHHhhCcceeeeEeeeecCCCc
Q psy5744 14 PTSLKQLSRLVVRGFYSIEDSLIIDMLVRNPCMKEDDICELL-----KFERKMLRARISTLKNDKIIQTRLRMETGLDGK 88 (157)
Q Consensus 14 p~~~~~Lv~~v~R~Fy~~e~ivIlD~L~~~~~i~dedLa~~l-----~i~~k~vRkiL~~L~~d~Lv~~~~~~e~~~~gk 88 (157)
.+.++.+...+.++.. ...||-+|. +..+--+|++.+ ++++..|=.+|.+|+++|+|..... . .+|
T Consensus 7 ~~~~~~~~~~l~~g~l---~~~IL~lL~--~p~~GYei~~~l~~~~~~is~gtlY~~L~rLe~~GlI~~~~~--~-~~~- 77 (123)
T 3ri2_A 7 DDIVSSMVLELRRGTL---VMLVLSQLR--EPAYGYALVKSLADHGIPIEANTLYPLMRRLESQGLLASEWD--N-GGS- 77 (123)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHTT--SCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEEEE--E-CSS-
T ss_pred HHHHHHHHHHHHhCcH---HHHHHHHHc--CCCCHHHHHHHHHHhCCCCCcchHHHHHHHHHHCCCEEEEec--c-CCC-
Confidence 3445555555555432 245665554 778888888885 8999999999999999999998632 2 222
Q ss_pred eeEEEEEEecchh--HHHHHHHHHHHHHHHHHHHHh
Q psy5744 89 AQKVNYYFINYQT--FVNIVKYKLDVMRKRMEMEER 122 (157)
Q Consensus 89 ~~~~~yw~I~y~~--~~~vik~rl~~m~~~L~~~~~ 122 (157)
..+.||.|.-.. ...........+.+.++.-++
T Consensus 78 -~~rk~Y~LT~~Gr~~l~~~~~~~~~~~~~i~~il~ 112 (123)
T 3ri2_A 78 -KPRKYYRTTDEGLRVLREVEAQWHVLCDGVGKLLE 112 (123)
T ss_dssp -CEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred -CCceEEEECHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 557788888543 333333455566666655543
No 180
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=93.01 E-value=0.46 Score=36.95 Aligned_cols=46 Identities=4% Similarity=0.126 Sum_probs=40.6
Q ss_pred hHHHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 33 DSLIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 33 ~ivIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
+-.|++.+-.++.+|..+||..+|++....+..|..+..+|++-..
T Consensus 156 ~~~il~~~~~~g~vt~~~la~~l~ws~~~a~e~L~~~e~~G~l~~D 201 (218)
T 3cuq_B 156 VASALETVSEKGSLTSEEFAKLVGMSVLLAKERLLLAEKMGHLCRD 201 (218)
T ss_dssp HHHHHHHHHHTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHCCCcCHHHHHHHhCCCHHHHHHHHHHHHHcCCEEEE
Confidence 4456776666899999999999999999999999999999999864
No 181
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=92.97 E-value=0.1 Score=38.27 Aligned_cols=34 Identities=12% Similarity=0.326 Sum_probs=31.9
Q ss_pred CcCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 45 CMKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 45 ~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
.++-++||..+|+.+..|.++|.+|+++|+|...
T Consensus 167 ~~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~~~ 200 (210)
T 3ryp_A 167 KITRQEIGQIVGCSRETVGRILKMLEDQNLISAH 200 (210)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred ccCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEeC
Confidence 4788999999999999999999999999999875
No 182
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=92.96 E-value=0.15 Score=42.23 Aligned_cols=45 Identities=7% Similarity=0.139 Sum_probs=41.7
Q ss_pred HHHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 34 SLIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 34 ivIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
..|++.|.+++.+|=.|||+.+|++...|.+++..|.++|+|...
T Consensus 19 ~~il~~l~~~~~~sr~~la~~~~ls~~tv~~~v~~L~~~g~i~~~ 63 (406)
T 1z6r_A 19 GAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVHEMLEAHLVQEL 63 (406)
T ss_dssp HHHHHHHHSSCSCCHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEC
T ss_pred HHHHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEee
Confidence 458888888999999999999999999999999999999999774
No 183
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=92.92 E-value=0.18 Score=31.35 Aligned_cols=43 Identities=19% Similarity=0.355 Sum_probs=38.2
Q ss_pred HHHHHHHhC-CCcCHHHHHHHhCCChHHHHHHHHHHhhCcceee
Q psy5744 35 LIIDMLVRN-PCMKEDDICELLKFERKMLRARISTLKNDKIIQT 77 (157)
Q Consensus 35 vIlD~L~~~-~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~ 77 (157)
.++|.+-.+ |.+.=++.|+..|++..+|=.+|.+|.+.||++-
T Consensus 14 ~lL~yIr~sGGildI~~~a~kygV~kdeV~~~LrrLe~KGLI~l 57 (59)
T 2xvc_A 14 ELLDYIVNNGGFLDIEHFSKVYGVEKQEVVKLLEALKNKGLIAV 57 (59)
T ss_dssp HHHHHHHHTTSEEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHcCCEEeHHHHHHHhCCCHHHHHHHHHHHHHCCCeec
Confidence 477887764 6788899999999999999999999999999974
No 184
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=92.90 E-value=0.13 Score=42.49 Aligned_cols=43 Identities=9% Similarity=0.173 Sum_probs=40.5
Q ss_pred HHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 35 LIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 35 vIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
.|++.|. ++.+|=.|||+.+|+++..|.+++..|.++|+|...
T Consensus 24 ~il~~l~-~~~~sr~~la~~~gls~~tv~~~v~~L~~~gli~~~ 66 (380)
T 2hoe_A 24 RILKRIM-KSPVSRVELAEELGLTKTTVGEIAKIFLEKGIVVEE 66 (380)
T ss_dssp CSHHHHH-HSCBCHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHH-cCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEee
Confidence 4788888 999999999999999999999999999999999875
No 185
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=92.81 E-value=0.11 Score=38.30 Aligned_cols=34 Identities=9% Similarity=0.279 Sum_probs=31.9
Q ss_pred CcCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 45 CMKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 45 ~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
.++-++||..+|+.+..|.++|.+|+++|+|...
T Consensus 163 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~ 196 (216)
T 4ev0_A 163 QIRHHELAALAGTSRETVSRVLHALAEEGVVRLG 196 (216)
T ss_dssp ECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEec
Confidence 4789999999999999999999999999999864
No 186
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=92.75 E-value=0.11 Score=38.60 Aligned_cols=33 Identities=18% Similarity=0.433 Sum_probs=31.5
Q ss_pred cCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 46 MKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 46 i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
++-++||..+|+.+..|.++|.+|+++|+|...
T Consensus 188 lt~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~ 220 (230)
T 3iwz_A 188 VSRQELARLVGCSREMAGRVLKKLQADGLLHAR 220 (230)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEEC
Confidence 789999999999999999999999999999875
No 187
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=92.65 E-value=0.25 Score=40.29 Aligned_cols=60 Identities=10% Similarity=0.115 Sum_probs=47.2
Q ss_pred HHHHHHHHHcCCCc------hHHHHHHHHhC-CCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 19 QLSRLVVRGFYSIE------DSLIIDMLVRN-PCMKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 19 ~Lv~~v~R~Fy~~e------~ivIlD~L~~~-~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
+++..++.+|.... ..-|.|.|... +.++-++||+.+|+++.-++++|..|...|++...
T Consensus 10 ~~L~~l~~Gf~~s~~L~aa~eLglfd~L~~~~~p~t~~eLA~~~g~~~~~l~rlLr~L~~~gll~~~ 76 (353)
T 4a6d_A 10 RLLNDYANGFMVSQVLFAACELGVFDLLAEAPGPLDVAAVAAGVRASAHGTELLLDICVSLKLLKVE 76 (353)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHSSSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCHHHHHhcCCCCCCHHHHHHhhCcCHHHHHHHHHHHHHCCCEEEe
Confidence 34444555554444 23489998864 67999999999999999999999999999999754
No 188
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=92.58 E-value=0.15 Score=41.56 Aligned_cols=45 Identities=18% Similarity=0.221 Sum_probs=39.8
Q ss_pred HHHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 34 SLIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 34 ivIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
.-|++.|-.++.++-++||+.+|++...||+-|..|++.|++...
T Consensus 8 ~~Il~~L~~~~~~s~~eLa~~l~vS~~ti~r~l~~L~~~G~~i~~ 52 (321)
T 1bia_A 8 LKLIALLANGEFHSGEQLGETLGMSRAAINKHIQTLRDWGVDVFT 52 (321)
T ss_dssp HHHHHHHTTSSCBCHHHHHHHHTSCHHHHHHHHHHHHHTTCCCEE
T ss_pred HHHHHHHHcCCCcCHHHHHHHHCCCHHHHHHHHHHHHhCCCcEEE
Confidence 457777766788999999999999999999999999999998643
No 189
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=92.58 E-value=0.18 Score=38.95 Aligned_cols=37 Identities=19% Similarity=0.290 Sum_probs=33.9
Q ss_pred CCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeeeE
Q psy5744 43 NPCMKEDDICELLKFERKMLRARISTLKNDKIIQTRL 79 (157)
Q Consensus 43 ~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~~ 79 (157)
++.++=.+||+.||++...||..+.+|++.|||.+..
T Consensus 28 ~~~V~~~~LA~~LgvS~~SV~~~lkkL~e~GLV~~~~ 64 (200)
T 2p8t_A 28 KEPLGRKQISERLELGEGSVRTLLRKLSHLDIIRSKQ 64 (200)
T ss_dssp TSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC-
T ss_pred cCCccHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEeC
Confidence 4679999999999999999999999999999998864
No 190
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=92.53 E-value=0.42 Score=34.78 Aligned_cols=33 Identities=15% Similarity=0.315 Sum_probs=31.4
Q ss_pred cCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 46 MKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 46 i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
++-++||..+|+++..|.++|.+|+++|+|...
T Consensus 140 ~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~ 172 (195)
T 3b02_A 140 VSHEEIADATASIRESVSKVLADLRREGLIATA 172 (195)
T ss_dssp CCHHHHHHTTTSCHHHHHHHHHHHHHHTSEEEE
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEec
Confidence 789999999999999999999999999999864
No 191
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=92.51 E-value=0.16 Score=38.13 Aligned_cols=44 Identities=9% Similarity=0.149 Sum_probs=36.6
Q ss_pred HHHHHHH----hCC-CcCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 35 LIIDMLV----RNP-CMKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 35 vIlD~L~----~~~-~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
-|+++|. .++ ..|-.|||+.+|+++.-+++.|..|+++|+|...
T Consensus 9 ~il~~I~~~~~~~g~~~s~~eia~~lgl~~~tv~~~l~~Le~~G~i~~~ 57 (196)
T 3k2z_A 9 KVLLFIEEFIEKNGYPPSVREIARRFRITPRGALLHLIALEKKGYIERK 57 (196)
T ss_dssp HHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEECC
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHcCCCcHHHHHHHHHHHHCCCEEec
Confidence 3455543 344 5899999999999999999999999999999764
No 192
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=92.51 E-value=0.1 Score=38.19 Aligned_cols=46 Identities=17% Similarity=0.231 Sum_probs=41.4
Q ss_pred hHHHHHHHHhCCC---cCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 33 DSLIIDMLVRNPC---MKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 33 ~ivIlD~L~~~~~---i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
...||..|..++. ++-.+||+.+|+++..|.+++..|.+.|+|...
T Consensus 71 ~~~iL~~L~~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~ 119 (181)
T 2fbk_A 71 GWDLLLTLYRSAPPEGLRPTELSALAAISGPSTSNRIVRLLEKGLIERR 119 (181)
T ss_dssp HHHHHHHHHHHCCSSCBCHHHHHHHCSCCSGGGSSHHHHHHHHTSEECC
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCcCEEec
Confidence 5678888887654 999999999999999999999999999999865
No 193
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=92.50 E-value=0.17 Score=41.39 Aligned_cols=43 Identities=19% Similarity=0.277 Sum_probs=37.5
Q ss_pred HHHHHHHh--CCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceee
Q psy5744 35 LIIDMLVR--NPCMKEDDICELLKFERKMLRARISTLKNDKIIQT 77 (157)
Q Consensus 35 vIlD~L~~--~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~ 77 (157)
-|+++|.. ...+|-++||+.+|++..-|+|.+..|++.|++-.
T Consensus 7 ~iL~~L~~~~g~~~Sg~eLa~~lgvSr~aV~k~i~~L~~~G~~i~ 51 (323)
T 3rkx_A 7 DVLQLLYKNKPNYISGQSIAESLNISRTAVKKVIDQLKLEGCKID 51 (323)
T ss_dssp HHHHHHHHHTTSCBCHHHHHHHHTSCHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHhCCCCccCHHHHHHHHCCCHHHHHHHHHHHHhcCCeEE
Confidence 47888764 35899999999999999999999999999999554
No 194
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=92.40 E-value=0.13 Score=38.43 Aligned_cols=34 Identities=9% Similarity=0.244 Sum_probs=31.9
Q ss_pred CcCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 45 CMKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 45 ~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
.++-++||..+|+++..|.++|.+|+++|+|...
T Consensus 180 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~ 213 (232)
T 2gau_A 180 YLSREELATLSNMTVSNAIRTLSTFVSERMLALD 213 (232)
T ss_dssp CCCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred ccCHHHHHHHhCCCHHHHHHHHHHHHHCCCEeeC
Confidence 4789999999999999999999999999999864
No 195
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=92.35 E-value=0.14 Score=37.60 Aligned_cols=33 Identities=15% Similarity=0.253 Sum_probs=31.3
Q ss_pred cCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 46 MKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 46 i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
++-++||..+|+.+..|.++|..|+++|+|...
T Consensus 147 ~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~~ 179 (202)
T 2zcw_A 147 ATHDELAAAVGSVRETVTKVIGELAREGYIRSG 179 (202)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEeC
Confidence 789999999999999999999999999999864
No 196
>2dql_A PEX protein; circadian clock associated protein, circadian clock protein; 1.70A {Anabaena SP}
Probab=92.10 E-value=2 Score=29.55 Aligned_cols=64 Identities=14% Similarity=0.201 Sum_probs=46.1
Q ss_pred HHHHHHHHhCCCcCHHHHHHHh-------CCChHHHHHHHHHHhhCcceeeeEeeeecCCCceeEEEEEEecchh
Q psy5744 34 SLIIDMLVRNPCMKEDDICELL-------KFERKMLRARISTLKNDKIIQTRLRMETGLDGKAQKVNYYFINYQT 101 (157)
Q Consensus 34 ivIlD~L~~~~~i~dedLa~~l-------~i~~k~vRkiL~~L~~d~Lv~~~~~~e~~~~gk~~~~~yw~I~y~~ 101 (157)
.+||-.|. .+..+--+|++.+ +++...|-.+|.+|+++|+|........ .+| ..+.||.|.-..
T Consensus 25 ~~IL~lL~-~~~~~Gyei~~~l~~~~~~~~is~gtLY~~L~rLe~~GlI~~~~~~~~-~~~--~~rk~Y~LT~~G 95 (115)
T 2dql_A 25 CYILYVLL-QGESYGTELIQQLETEHPTYRLSDTVLYSAIKFLEDNRAITGYWKKLE-GRG--RPRRMYQVSPEW 95 (115)
T ss_dssp HHHHHHHT-TSCBCHHHHHHHHHHHCTTEECCHHHHHHHHHHHHHTTSEEEEEECCT-TCS--SCEEEEEECGGG
T ss_pred HHHHHHHH-hCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHCCCEEEEeeecC-CCC--CCcEEEEECHHH
Confidence 34666655 5678888887776 5999999999999999999998632210 122 447888988543
No 197
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=92.04 E-value=0.15 Score=38.15 Aligned_cols=34 Identities=15% Similarity=0.223 Sum_probs=31.9
Q ss_pred CcCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 45 CMKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 45 ~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
.++-++||..+|+.+..|.++|..|+++|+|...
T Consensus 175 ~~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~~~ 208 (231)
T 3e97_A 175 PLGTQDIMARTSSSRETVSRVLKRLEAHNILEVS 208 (231)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEec
Confidence 4789999999999999999999999999999865
No 198
>3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, prote structure initiative; 1.70A {Thermoplasma acidophilum}
Probab=92.02 E-value=0.36 Score=33.61 Aligned_cols=83 Identities=16% Similarity=0.173 Sum_probs=54.5
Q ss_pred HHHHHHHHhCCCcCHHHHHHHhC------CChHHHHHHHHHHhhCcceeeeEeeeecCCCceeEEEEEEecchhHHHHHH
Q psy5744 34 SLIIDMLVRNPCMKEDDICELLK------FERKMLRARISTLKNDKIIQTRLRMETGLDGKAQKVNYYFINYQTFVNIVK 107 (157)
Q Consensus 34 ivIlD~L~~~~~i~dedLa~~l~------i~~k~vRkiL~~L~~d~Lv~~~~~~e~~~~gk~~~~~yw~I~y~~~~~vik 107 (157)
..||-.|. .+..+--+|++.++ ++...|-.+|.+|+++|+|...... . ++| ..+.||.|.-..--..-.
T Consensus 17 ~~IL~lL~-~~p~~gyel~~~l~~~~~~~i~~gtly~~L~~Le~~GlI~~~~~~-~-~~~--~~rk~Y~lT~~G~~~l~~ 91 (117)
T 3elk_A 17 LYILKELV-KRPMHGYELQKSMFETTGQALPQGSIYILLKTMKERGFVISESSV-N-EKG--QQLTVYHITDAGKKFLCD 91 (117)
T ss_dssp HHHHHHHH-HSCEEHHHHHHHHHHHHSCCCCTTHHHHHHHHHHHHTSEEEEEEE-C--CC--CEEEEEEECHHHHHHHHH
T ss_pred HHHHHHHH-cCCCCHHHHHHHHHHHhCCCCCcchHHHHHHHHHHCCCEEEEeee-c-CCC--CCceEEEECHHHHHHHHH
Confidence 45676665 56788889998886 8999999999999999999987322 1 232 446788888543322222
Q ss_pred --HHHHHHHHHHHHHH
Q psy5744 108 --YKLDVMRKRMEMEE 121 (157)
Q Consensus 108 --~rl~~m~~~L~~~~ 121 (157)
.....+.+.++.-+
T Consensus 92 ~~~~~~~~~~~i~~~l 107 (117)
T 3elk_A 92 HSQALQLARKIIDDLL 107 (117)
T ss_dssp TSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 13444444444443
No 199
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=91.99 E-value=0.16 Score=38.68 Aligned_cols=34 Identities=18% Similarity=0.288 Sum_probs=32.2
Q ss_pred CcCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 45 CMKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 45 ~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
.++-++||..+|+.+..|.++|.+|+++|+|...
T Consensus 193 ~lt~~~lA~~lG~sr~tvsR~l~~L~~~GlI~~~ 226 (243)
T 3la7_A 193 KLSHQAIAEAIGSTRVTVTRLLGDLREKKMISIH 226 (243)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCCHHHHHHHHCCcHHHHHHHHHHHHHCCCEEEc
Confidence 5789999999999999999999999999999875
No 200
>1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61
Probab=91.97 E-value=0.36 Score=35.78 Aligned_cols=44 Identities=11% Similarity=0.194 Sum_probs=38.2
Q ss_pred HHHHHHHHhCCCcCHHHHHHHh--------CCChHHHHHHHHHHhhCcceeee
Q psy5744 34 SLIIDMLVRNPCMKEDDICELL--------KFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 34 ivIlD~L~~~~~i~dedLa~~l--------~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
..||-.|. .+.++-.||++.+ +++...|-.+|.+|+++|+|...
T Consensus 5 ~~iL~lL~-~~~~~gyel~~~l~~~~~~~~~~s~~~ly~~L~~Le~~GlI~~~ 56 (179)
T 1yg2_A 5 HVILTVLS-TRDATGYDITKEFSASIGYFWKASHQQVYRELNKMGEQGLVTCV 56 (179)
T ss_dssp HHHHHHHH-HCCBCHHHHHHHHTTGGGGTCCCCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHh-cCCCCHHHHHHHHHHHhCCccCCCcCcHHHHHHHHHHCCCeEEE
Confidence 35666665 4789999999999 79999999999999999999875
No 201
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=91.82 E-value=0.17 Score=37.71 Aligned_cols=34 Identities=12% Similarity=0.297 Sum_probs=31.9
Q ss_pred CcCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 45 CMKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 45 ~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
.++-++||..+|+.+..|.++|..|+++|+|...
T Consensus 177 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~ 210 (227)
T 3d0s_A 177 DLTQEEIAQLVGASRETVNKALADFAHRGWIRLE 210 (227)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEec
Confidence 3799999999999999999999999999999864
No 202
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=91.75 E-value=0.23 Score=37.06 Aligned_cols=44 Identities=20% Similarity=0.286 Sum_probs=38.3
Q ss_pred HHHHHHHHhC-CCcCHHHHHHHhCCChHHHHHHHHHHhhCcc-eee
Q psy5744 34 SLIIDMLVRN-PCMKEDDICELLKFERKMLRARISTLKNDKI-IQT 77 (157)
Q Consensus 34 ivIlD~L~~~-~~i~dedLa~~l~i~~k~vRkiL~~L~~d~L-v~~ 77 (157)
.-|++.|..+ +.++-.+||+.+|++...|++-+..|++.|+ |..
T Consensus 24 ~~Il~~L~~~~~~~s~~eLa~~l~vS~~Ti~rdi~~L~~~G~~I~~ 69 (187)
T 1j5y_A 24 KSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAYLRSLGYNIVA 69 (187)
T ss_dssp HHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHHHHHHHHTCCCEE
T ss_pred HHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEE
Confidence 4578887764 5699999999999999999999999999998 653
No 203
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=91.75 E-value=0.24 Score=37.65 Aligned_cols=46 Identities=13% Similarity=0.281 Sum_probs=41.9
Q ss_pred chHHHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceee
Q psy5744 32 EDSLIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQT 77 (157)
Q Consensus 32 e~ivIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~ 77 (157)
.+-.|++.|-.++.++++|||+.+|++...+|+=|..|...+|...
T Consensus 13 R~~~i~~~l~~~~~~~~~~la~~~~vs~~TiRrDl~eL~~~~l~~r 58 (190)
T 4a0z_A 13 RREAIRQQIDSNPFITDHELSDLFQVSIQTIRLDRTYLNIPELRKR 58 (190)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHTCCCHHHH
T ss_pred HHHHHHHHHHHCCCEeHHHHHHHHCCCHHHHHHHHHHhcCcchhhH
Confidence 4567899988999999999999999999999999999999988754
No 204
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=91.67 E-value=1.4 Score=28.33 Aligned_cols=63 Identities=13% Similarity=0.187 Sum_probs=46.9
Q ss_pred CcccccchHHHHHHHHHHHHHcCCCchH----HHHHHHHhCCCcC--HHHHHHHhCCChHHHHHHHHHHh
Q psy5744 7 GYVHTEVPTSLKQLSRLVVRGFYSIEDS----LIIDMLVRNPCMK--EDDICELLKFERKMLRARISTLK 70 (157)
Q Consensus 7 ~~~~~~ip~~~~~Lv~~v~R~Fy~~e~i----vIlD~L~~~~~i~--dedLa~~l~i~~k~vRkiL~~L~ 70 (157)
|..+...++.-.+|...+. ...++... .|++.|=.+|+++ -++||..+|++..+|.++|..+.
T Consensus 5 ~~~~~~~~~e~ehL~~Ql~-~~~~~~~~~Ia~~iI~~LD~~GYL~~~l~eia~~l~~~~~eve~vL~~lQ 73 (76)
T 2k9l_A 5 PYQIPYTPSELEELQQNIK-LELEGKEQELALELLNYLNEKGFLSKSVEEISDVLRCSVEELEKVRQKVL 73 (76)
T ss_dssp CSSSSCCHHHHHHHHHHHH-HHCCTTSHHHHHHHHHHCTTSSTTCCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred hhhhccCCchHHHHHHHHc-ccCCHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHcCCCHHHHHHHHHHHh
Confidence 3334444544788888888 77777644 3556655678855 78999999999999999998775
No 205
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=91.67 E-value=0.22 Score=39.26 Aligned_cols=82 Identities=15% Similarity=0.199 Sum_probs=56.8
Q ss_pred hHHHHHHHHhC--CCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeeeEeeeecCCCceeEEEEEEecc--hhHHHHHHH
Q psy5744 33 DSLIIDMLVRN--PCMKEDDICELLKFERKMLRARISTLKNDKIIQTRLRMETGLDGKAQKVNYYFINY--QTFVNIVKY 108 (157)
Q Consensus 33 ~ivIlD~L~~~--~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~~~~e~~~~gk~~~~~yw~I~y--~~~~~vik~ 108 (157)
...||..|-.+ +.++-.|||+.+++++..+-++|.+|++.|+|...+ .+ .|.|.. +=++.- ..++..+..
T Consensus 36 q~~vL~~L~~~~~~~~~~~el~~~l~~~~~t~t~~l~rLe~~G~i~R~~-~~--~DrR~~---~i~LT~~G~~~~~~~~~ 109 (250)
T 1p4x_A 36 EFILLTYLFHQQENTLPFKKIVSDLCYKQSDLVQHIKVLVKHSYISKVR-SK--IDERNT---YISISEEQREKIAERVT 109 (250)
T ss_dssp HHHHHHHHHSCSCSEEEHHHHHHHSSSCGGGTHHHHHHHHHTTSCEEEE-CS--SSTTSE---EEECCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCEEecC-CC--CCCCeE---EEEECHHHHHHHHHHHH
Confidence 57888898874 479999999999999999999999999999999762 21 243332 223332 234455555
Q ss_pred HHHHHHHHHHHH
Q psy5744 109 KLDVMRKRMEME 120 (157)
Q Consensus 109 rl~~m~~~L~~~ 120 (157)
.+..+.+.+..+
T Consensus 110 ~~~~~~eq~s~E 121 (250)
T 1p4x_A 110 LFDQIIKQFNLA 121 (250)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc
Confidence 555555555554
No 206
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=91.58 E-value=0.85 Score=34.48 Aligned_cols=34 Identities=15% Similarity=0.327 Sum_probs=32.1
Q ss_pred CcCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 45 CMKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 45 ~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
.++-++||..+|+.+..|.++|..|+++|+|...
T Consensus 177 ~~t~~~iA~~lG~sr~tvsR~l~~L~~~g~I~~~ 210 (250)
T 3e6c_C 177 PLSQKSIGEITGVHHVTVSRVLASLKRENILDKK 210 (250)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCCCeEeC
Confidence 5799999999999999999999999999999865
No 207
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=91.47 E-value=0.16 Score=37.83 Aligned_cols=33 Identities=15% Similarity=0.326 Sum_probs=31.5
Q ss_pred cCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 46 MKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 46 i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
++-++||..+|+.+..|.++|..|+++|+|...
T Consensus 164 ~t~~~lA~~lG~sr~tvsR~l~~L~~~g~I~~~ 196 (222)
T 1ft9_A 164 FTVEEIANLIGSSRQTTSTALNSLIKEGYISRQ 196 (222)
T ss_dssp CCHHHHHHHHCSCHHHHHHHHHHHHHTTSSEEC
T ss_pred CCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEEc
Confidence 789999999999999999999999999999864
No 208
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=91.41 E-value=0.26 Score=38.56 Aligned_cols=45 Identities=11% Similarity=0.090 Sum_probs=39.8
Q ss_pred hHHHHHHHHh-CCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceee
Q psy5744 33 DSLIIDMLVR-NPCMKEDDICELLKFERKMLRARISTLKNDKIIQT 77 (157)
Q Consensus 33 ~ivIlD~L~~-~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~ 77 (157)
.+-||++|.. ++.++=.|||+.+|++...+.++|..|.+.|+|..
T Consensus 16 ~l~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~~L~~~G~v~~ 61 (257)
T 2g7u_A 16 GFAVLLAFDAQRPNPTLAELATEAGLSRPAVRRILLTLQKLGYVAG 61 (257)
T ss_dssp HHHHHHTCSSSCSSCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe
Confidence 3568888875 46799999999999999999999999999999975
No 209
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=91.40 E-value=0.036 Score=45.53 Aligned_cols=48 Identities=17% Similarity=0.232 Sum_probs=0.0
Q ss_pred CchHHHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 31 IEDSLIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 31 ~e~ivIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
+.+..||..|..++.++-.|||+.+|++...||+.|..|++.|+|..+
T Consensus 20 ~r~~~iL~~l~~~~~~t~~eLa~~l~vs~~Tv~r~l~~Le~~Glv~~~ 67 (345)
T 2o0m_A 20 QERFQILRNIYWMQPIGRRSLSETMGITERVLRTETDVLKQLNLIEPS 67 (345)
T ss_dssp ------------------------------------------------
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 345678888888899999999999999999999999999999999743
No 210
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=91.32 E-value=0.3 Score=40.88 Aligned_cols=45 Identities=7% Similarity=0.121 Sum_probs=41.9
Q ss_pred HHHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 34 SLIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 34 ivIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
..|++.|.+++.+|=.|||+.+|+++..|.+++..|.++|+|...
T Consensus 42 ~~il~~l~~~~~~sr~ela~~~gls~~tv~~~v~~L~~~gli~~~ 86 (429)
T 1z05_A 42 GRVYKLIDQKGPISRIDLSKESELAPASITKITRELIDAHLIHET 86 (429)
T ss_dssp HHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEec
Confidence 458888888999999999999999999999999999999999875
No 211
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=91.25 E-value=0.25 Score=38.82 Aligned_cols=44 Identities=9% Similarity=0.222 Sum_probs=39.7
Q ss_pred HHHHHHHHh-CCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceee
Q psy5744 34 SLIIDMLVR-NPCMKEDDICELLKFERKMLRARISTLKNDKIIQT 77 (157)
Q Consensus 34 ivIlD~L~~-~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~ 77 (157)
+-||++|.. ++.++=.|||+.+|++...+.++|..|.+.|+|..
T Consensus 26 l~iL~~l~~~~~~~~~~eia~~~gl~kstv~r~l~tL~~~G~v~~ 70 (260)
T 2o0y_A 26 IDLLELFDAAHPTRSLKELVEGTKLPKTTVVRLVATMCARSVLTS 70 (260)
T ss_dssp HHHHTTCBTTBSSBCHHHHHHHHCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHhhCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 578888864 56899999999999999999999999999999974
No 212
>2e1n_A PEX, period extender; circadian clock, DNA binding protein, circadian clock protei; 1.80A {Synechococcus elongatus pcc 7942}
Probab=91.24 E-value=0.63 Score=33.49 Aligned_cols=63 Identities=11% Similarity=0.218 Sum_probs=45.6
Q ss_pred HHHHHHHHhCCCcCHHHHHHHh-------CCChHHHHHHHHHHhhCcceeeeEeeeecCCCceeEEEEEEecch
Q psy5744 34 SLIIDMLVRNPCMKEDDICELL-------KFERKMLRARISTLKNDKIIQTRLRMETGLDGKAQKVNYYFINYQ 100 (157)
Q Consensus 34 ivIlD~L~~~~~i~dedLa~~l-------~i~~k~vRkiL~~L~~d~Lv~~~~~~e~~~~gk~~~~~yw~I~y~ 100 (157)
.+||.+|. .+..+--+|++.+ +++...|-.+|.+|+++|+|....... ++ ....+.||.|.-.
T Consensus 37 ~~IL~lL~-~~~~~Gyei~k~l~~~~~~~~is~gtLYp~L~rLe~~GlI~~~~~~~--~~-~g~~rk~Y~LT~~ 106 (138)
T 2e1n_A 37 CYVLAVLR-HEDSYGTELIQHLETHWPNYRLSDTVLYTALKFLEDEQIISGYWKKV--EG-RGRPRRMYQLAQA 106 (138)
T ss_dssp HHHHHHHT-TSCEEHHHHHHHHHHHSTTEECCHHHHHHHHHHHHHTTSEEEEEECC--TT-CSSCEEEEEESCS
T ss_pred HHHHHHHH-hCCCcHHHHHHHHHHHcCCCCCCccHHHHHHHHHHHCCCEEEEeecc--cC-CCCCcEEEEECHH
Confidence 44676665 5677777877776 599999999999999999999863221 11 1244788898864
No 213
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=91.22 E-value=0.21 Score=38.50 Aligned_cols=34 Identities=12% Similarity=0.326 Sum_probs=31.8
Q ss_pred CcCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 45 CMKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 45 ~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
.++-++||..+|+.+..|.++|.+|+++|+|...
T Consensus 217 ~lt~~~lA~~lG~sr~tvsR~l~~L~~~GlI~~~ 250 (260)
T 3kcc_A 217 KITRQEIGQIVGCSRETVGRILKMLEDQNLISAH 250 (260)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEc
Confidence 4688999999999999999999999999999875
No 214
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=91.17 E-value=0.24 Score=36.68 Aligned_cols=34 Identities=15% Similarity=0.286 Sum_probs=31.9
Q ss_pred CcCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 45 CMKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 45 ~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
.++-++||..+|+++..|.++|.+|+++|+|...
T Consensus 167 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~ 200 (220)
T 2fmy_A 167 GLNTEEIALMLGTTRQTVSVLLNDFKKMGILERV 200 (220)
T ss_dssp SSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEES
T ss_pred cCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEEc
Confidence 5899999999999999999999999999999863
No 215
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=91.13 E-value=0.47 Score=32.31 Aligned_cols=42 Identities=17% Similarity=0.270 Sum_probs=36.1
Q ss_pred CCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeeeEeeeecCCCce
Q psy5744 44 PCMKEDDICELLKFERKMLRARISTLKNDKIIQTRLRMETGLDGKA 89 (157)
Q Consensus 44 ~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~~~~e~~~~gk~ 89 (157)
+.++--+||+.++++.--+++.+..|++.|||... .. .|||.
T Consensus 35 ~~~s~~eLa~~l~l~~stLsR~l~rLe~~GLV~r~--~~--~D~R~ 76 (96)
T 2obp_A 35 TPWSLPKIAKRAQLPMSVLRRVLTQLQAAGLADVS--VE--ADGRG 76 (96)
T ss_dssp CCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE--EC--TTSCE
T ss_pred CCcCHHHHHHHhCCchhhHHHHHHHHHHCCCEEee--cC--CCCce
Confidence 56899999999999999999999999999999963 22 46665
No 216
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=91.10 E-value=0.21 Score=37.64 Aligned_cols=69 Identities=16% Similarity=0.146 Sum_probs=47.8
Q ss_pred cccchHHHHHHHHHHHHHcCC-----------CchHHHHHHHHhC----C-----CcCHHHHHHHhCCChHHHHHHHHHH
Q psy5744 10 HTEVPTSLKQLSRLVVRGFYS-----------IEDSLIIDMLVRN----P-----CMKEDDICELLKFERKMLRARISTL 69 (157)
Q Consensus 10 ~~~ip~~~~~Lv~~v~R~Fy~-----------~e~ivIlD~L~~~----~-----~i~dedLa~~l~i~~k~vRkiL~~L 69 (157)
....|+....+++.+++.+.. +-.--+..+|+.. + .++-++||..+|+.+..|.++|..|
T Consensus 131 ~~~~p~~~~~l~~~l~~~l~~~~~~~~~l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~t~~~lA~~lG~sr~tvsR~l~~l 210 (232)
T 1zyb_A 131 LFRYDIFRLNYMNIVSNRAQNLYSRLWDEPTLDLKSKIIRFFLSHCEKPQGEKTFKVKMDDLARCLDDTRLNISKTLNEL 210 (232)
T ss_dssp GGGSHHHHHHHHHHHHHHHHHHHHHTTSCCCCSHHHHHHHHHHTTCSSSSSCEEEECCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhhcCCeEEecCCHHHHHHHhCCChhHHHHHHHHH
Confidence 345566666666665554322 1122244455531 1 3789999999999999999999999
Q ss_pred hhCcceeee
Q psy5744 70 KNDKIIQTR 78 (157)
Q Consensus 70 ~~d~Lv~~~ 78 (157)
+++|+|...
T Consensus 211 ~~~glI~~~ 219 (232)
T 1zyb_A 211 QDNGLIELH 219 (232)
T ss_dssp HHTTSCEEE
T ss_pred HHCCCEEec
Confidence 999999865
No 217
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=90.96 E-value=0.24 Score=39.39 Aligned_cols=44 Identities=7% Similarity=0.254 Sum_probs=38.4
Q ss_pred HHHHHHHHhC-CCcCHHHHHHHhCCChHHHHHHHHHHhhCcceee
Q psy5744 34 SLIIDMLVRN-PCMKEDDICELLKFERKMLRARISTLKNDKIIQT 77 (157)
Q Consensus 34 ivIlD~L~~~-~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~ 77 (157)
+-||++|..+ +.++=.|||+.+|++...+.++|..|.+.|+|..
T Consensus 33 l~IL~~l~~~~~~ltl~eia~~lgl~ksTv~RlL~tL~~~G~v~~ 77 (275)
T 3mq0_A 33 VRILDLVAGSPRDLTAAELTRFLDLPKSSAHGLLAVMTELDLLAR 77 (275)
T ss_dssp HHHHHHHHHCSSCEEHHHHHHHHTCC--CHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 5799999875 5799999999999999999999999999999974
No 218
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=90.85 E-value=0.23 Score=37.57 Aligned_cols=34 Identities=18% Similarity=0.214 Sum_probs=31.7
Q ss_pred CcCHHHHHHHhCCCh-HHHHHHHHHHhhCcceeee
Q psy5744 45 CMKEDDICELLKFER-KMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 45 ~i~dedLa~~l~i~~-k~vRkiL~~L~~d~Lv~~~ 78 (157)
.++-++||..+|+.+ ..|.++|.+|+++|+|...
T Consensus 169 ~~t~~~lA~~lG~sr~etvsR~l~~l~~~glI~~~ 203 (238)
T 2bgc_A 169 NLTMQELGYSSGIAHSSAVSRIISKLKQEKVIVYK 203 (238)
T ss_dssp CCCHHHHHHHTTCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCCHHHHHHHhCCChHHHHHHHHHHHHHCCCEEec
Confidence 588999999999999 6999999999999999864
No 219
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=90.84 E-value=0.15 Score=37.90 Aligned_cols=34 Identities=12% Similarity=0.186 Sum_probs=31.7
Q ss_pred CcCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 45 CMKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 45 ~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
.++-++||..+|+.+..|.++|.+|+++|+|...
T Consensus 178 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~ 211 (227)
T 3dkw_A 178 PVAKQLVAGHLSIQPETFSRIMHRLGDEGIIHLD 211 (227)
T ss_dssp CSCTHHHHHHTTSCHHHHHHHHHHHHHHTSEEES
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCCcEEec
Confidence 4678999999999999999999999999999865
No 220
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=90.62 E-value=0.2 Score=39.39 Aligned_cols=45 Identities=9% Similarity=0.159 Sum_probs=40.6
Q ss_pred hHHHHHHHHh-CCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceee
Q psy5744 33 DSLIIDMLVR-NPCMKEDDICELLKFERKMLRARISTLKNDKIIQT 77 (157)
Q Consensus 33 ~ivIlD~L~~-~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~ 77 (157)
.+-||++|.. ++.++=.|||+.+|++...+.++|..|.+.|+|..
T Consensus 8 al~IL~~l~~~~~~lsl~eia~~lgl~ksT~~RlL~tL~~~G~v~~ 53 (260)
T 3r4k_A 8 ALTLLTYFNHGRLEIGLSDLTRLSGMNKATVYRLMSELQEAGFVEQ 53 (260)
T ss_dssp HHHHHTTCBTTBSEEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 3568888886 57899999999999999999999999999999974
No 221
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=90.57 E-value=0.48 Score=38.32 Aligned_cols=66 Identities=11% Similarity=0.137 Sum_probs=48.7
Q ss_pred cchHHHHHHHHHHHHHcCCCc------hHHHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 12 EVPTSLKQLSRLVVRGFYSIE------DSLIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 12 ~ip~~~~~Lv~~v~R~Fy~~e------~ivIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
++.+...++.+.+.-+|.... ..-|.|.|.. +.+|-+|||+.+|+++.-++++|..|...|++...
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~l~~a~~lgif~~L~~-~~~t~~eLA~~~g~~~~~l~rlLr~L~~~gll~~~ 97 (359)
T 1x19_A 26 DLLNYYHRANELVFKGLIEFSCMKAAIELDLFSHMAE-GPKDLATLAADTGSVPPRLEMLLETLRQMRVINLE 97 (359)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHHHTHHHHHTT-CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred ccCCcchHHHHHHHHHHHHHHHHHHHHHcCcHHHHcC-CCCCHHHHHHHhCcChHHHHHHHHHHHhCCCeEee
Confidence 344445555555443333332 2347888764 78999999999999999999999999999999853
No 222
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=90.55 E-value=0.48 Score=32.31 Aligned_cols=43 Identities=9% Similarity=0.259 Sum_probs=39.4
Q ss_pred HHHHHHHHhCCCcCHHHHHH-HhCCChHHHHHHHHHHhhCccee
Q psy5744 34 SLIIDMLVRNPCMKEDDICE-LLKFERKMLRARISTLKNDKIIQ 76 (157)
Q Consensus 34 ivIlD~L~~~~~i~dedLa~-~l~i~~k~vRkiL~~L~~d~Lv~ 76 (157)
.-||=+|.+++..|-.|||+ .++|+...|-+-+..|.++|+|.
T Consensus 19 fsiL~~L~~~~~~t~~~Lae~~l~~drstvsrnl~~L~r~GlVe 62 (95)
T 1bja_A 19 ATILITIAKKDFITAAEVREVHPDLGNAVVNSNIGVLIKKGLVE 62 (95)
T ss_dssp HHHHHHHHHSTTBCHHHHHHTCTTSCHHHHHHHHHHHHTTTSEE
T ss_pred HHHHHHHHHCCCCCHHHHHHHHhcccHHHHHHHHHHHHHCCCee
Confidence 45666777889999999999 99999999999999999999998
No 223
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=90.37 E-value=0.44 Score=38.36 Aligned_cols=45 Identities=9% Similarity=0.073 Sum_probs=40.0
Q ss_pred hHHHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 33 DSLIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 33 ~ivIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
..-|+|.|. .+.++-+|||+.+|+++.-++++|..|...|++...
T Consensus 41 ~l~i~~~l~-~~~~t~~ela~~~~~~~~~l~r~L~~L~~~g~~~~~ 85 (360)
T 1tw3_A 41 TLRLVDHIL-AGARTVKALAARTDTRPEALLRLIRHLVAIGLLEED 85 (360)
T ss_dssp HTTHHHHHH-TTCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HhCHHHHHh-CCCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCEEec
Confidence 345888884 678999999999999999999999999999999874
No 224
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=90.19 E-value=0.41 Score=42.29 Aligned_cols=45 Identities=13% Similarity=0.284 Sum_probs=40.8
Q ss_pred hHHHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhh-----Ccceee
Q psy5744 33 DSLIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKN-----DKIIQT 77 (157)
Q Consensus 33 ~ivIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~-----d~Lv~~ 77 (157)
...||+.|..++.+|-.+||+.+|++...++++|.+|.+ .|||..
T Consensus 432 ~~~iL~~l~~~~~it~~~la~~l~~s~~~~~~~L~~L~~~~~~~~glie~ 481 (583)
T 3lmm_A 432 IAIVLYLLFQRPFITIDVVARGLQSGKEAARNALEAARQTTVAGAPLIIA 481 (583)
T ss_dssp HHHHHHHHHHSSSBCHHHHHHHHTSCHHHHHHHHHHHHTCEETTEESEEE
T ss_pred HHHHHHHHHHCCCcCHHHHHHHhCcCHHHHHHHHHHHHhhhccccceEEE
Confidence 357899989999999999999999999999999999999 667764
No 225
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=90.10 E-value=0.091 Score=31.42 Aligned_cols=22 Identities=36% Similarity=0.676 Sum_probs=16.5
Q ss_pred CeeecCCCCCccchhhhhhccC
Q psy5744 128 SSFKCPRCLKTFTDLEPCLLVL 149 (157)
Q Consensus 128 ~~Y~Cp~C~~~Ys~lda~~L~d 149 (157)
.-|.|-+||++||..|...|..
T Consensus 2 ~iY~C~rCg~~fs~~el~~lP~ 23 (48)
T 4ayb_P 2 AVYRCGKCWKTFTDEQLKVLPG 23 (48)
T ss_dssp ---CCCCTTTTCCCCCSCCCSS
T ss_pred cEEEeeccCCCccHHHHhhCCC
Confidence 3699999999999999877643
No 226
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=90.08 E-value=0.15 Score=28.45 Aligned_cols=20 Identities=30% Similarity=0.800 Sum_probs=16.2
Q ss_pred CCCeeecCCCCCccchhhhh
Q psy5744 126 SRSSFKCPRCLKTFTDLEPC 145 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~ 145 (157)
+..+|+||.|.+.+..-+.+
T Consensus 2 ~~EGFiCP~C~~~l~s~~~L 21 (34)
T 3mjh_B 2 SSEGFICPQCMKSLGSADEL 21 (34)
T ss_dssp CSEEEECTTTCCEESSHHHH
T ss_pred CCcccCCcHHHHHcCCHHHH
Confidence 45689999999999877654
No 227
>2v7f_A RPS19, RPS19E SSU ribosomal protein S19E; diamond blackfan anemia small ribosomal subunit; 1.15A {Pyrococcus abyssi} SCOP: a.4.5.84
Probab=90.00 E-value=0.31 Score=35.81 Aligned_cols=35 Identities=6% Similarity=0.100 Sum_probs=31.5
Q ss_pred CCcCHHHHHHHhC--------------CChHHHHHHHHHHhhCcceeee
Q psy5744 44 PCMKEDDICELLK--------------FERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 44 ~~i~dedLa~~l~--------------i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
+..-+.+||+.+| ++..-||++|..|+.+|||...
T Consensus 66 g~~G~~~La~~~gg~k~~g~~p~~~~~vSr~tVR~AL~~Le~~GlV~~~ 114 (150)
T 2v7f_A 66 GPVGIERLRTYYGGRKNRGHAPERFYKAGGSIIRKALQQLEAAGFVEKV 114 (150)
T ss_dssp CSBCHHHHHHHHCC----CCCTTSCCCHHHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHCCCccCCcCCccccccchHHHHHHHHHHHHCCCEEEe
Confidence 3555799999999 9999999999999999999864
No 228
>2ra5_A Putative transcriptional regulator; beta structure, UTRA domain, structural genomics, PSI-2, protein structure initiative; HET: SRT; 2.40A {Streptomyces coelicolor A3} SCOP: d.190.1.2
Probab=89.95 E-value=0.078 Score=41.53 Aligned_cols=36 Identities=19% Similarity=0.362 Sum_probs=4.9
Q ss_pred CCCc-CHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 43 NPCM-KEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 43 ~~~i-~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
...+ ++.+||+.+|++..-||++|..|.++|+|..+
T Consensus 37 g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~ 73 (247)
T 2ra5_A 37 GSLLGNEIELAARLGLSRPTVRQAIQSLVDKGLLVRR 73 (247)
T ss_dssp -------------------------------CEEEEE
T ss_pred CCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 3456 89999999999999999999999999999765
No 229
>2zfw_A PEX; five alpha-helices + one beta-sheet, circadian clock protein; 2.90A {Synechococcus SP}
Probab=89.72 E-value=0.53 Score=34.36 Aligned_cols=62 Identities=13% Similarity=0.306 Sum_probs=44.4
Q ss_pred HHHHHHHHhCCCcCHHHHHHHh-------CCChHHHHHHHHHHhhCcceeeeEeeeecCCCceeEEEEEEecc
Q psy5744 34 SLIIDMLVRNPCMKEDDICELL-------KFERKMLRARISTLKNDKIIQTRLRMETGLDGKAQKVNYYFINY 99 (157)
Q Consensus 34 ivIlD~L~~~~~i~dedLa~~l-------~i~~k~vRkiL~~L~~d~Lv~~~~~~e~~~~gk~~~~~yw~I~y 99 (157)
.+||-+|. .+..+-.+|++.+ +++...|-.+|.+|+++|+|..+... .++....+.||.|--
T Consensus 47 ~~IL~lL~-~~p~~GYeI~k~l~~~~~~~~is~gtLYp~L~rLE~~GlI~~~~~~---~~~~g~~rk~Y~LT~ 115 (148)
T 2zfw_A 47 CYVLAVLR-HEDSYGTELIQHLETHWPNYRLSDTVLYTALKFLEDEQIISGYWKK---VEGRGRPRRMYQLAQ 115 (148)
T ss_dssp HHHHHHHT-TCCEEHHHHHHHHHHHCTTEECCSHHHHHHHHHHHHTSSEEEECCC---CTTSSCCCCEEEESS
T ss_pred HHHHHHHH-hCCCcHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHCCCEEEEeec---cCCCCCCcEEEEECH
Confidence 34666655 5678888888777 59999999999999999999976321 111123467888874
No 230
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=89.57 E-value=0.14 Score=24.85 Aligned_cols=17 Identities=24% Similarity=0.608 Sum_probs=13.8
Q ss_pred eeecCCCCCccchhhhh
Q psy5744 129 SFKCPRCLKTFTDLEPC 145 (157)
Q Consensus 129 ~Y~Cp~C~~~Ys~lda~ 145 (157)
.|.|+.|++.|+....+
T Consensus 3 ~~~C~~C~k~f~~~~~l 19 (27)
T 2kvh_A 3 PFSCSLCPQRSRDFSAM 19 (27)
T ss_dssp CEECSSSSCEESSHHHH
T ss_pred CccCCCcChhhCCHHHH
Confidence 58999999999876543
No 231
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=89.56 E-value=0.61 Score=25.87 Aligned_cols=29 Identities=7% Similarity=0.084 Sum_probs=25.2
Q ss_pred CcCHHHHHHHhCCChHHHHHHHHHHhhCc
Q psy5744 45 CMKEDDICELLKFERKMLRARISTLKNDK 73 (157)
Q Consensus 45 ~i~dedLa~~l~i~~k~vRkiL~~L~~d~ 73 (157)
.++-.+||+.+|++...|++.+....+.|
T Consensus 21 g~s~~~IA~~lgis~~Tv~~~~~~~~~~g 49 (51)
T 1tc3_C 21 NVSLHEMSRKISRSRHCIRVYLKDPVSYG 49 (51)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHCSTTTT
T ss_pred CCCHHHHHHHHCcCHHHHHHHHhhHHhcC
Confidence 47899999999999999999998766554
No 232
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=89.46 E-value=0.17 Score=37.58 Aligned_cols=34 Identities=15% Similarity=0.267 Sum_probs=0.0
Q ss_pred CcCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 45 CMKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 45 ~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
.++-++||..+|+.+..|.++|.+|+++|+|...
T Consensus 164 ~~t~~~lA~~lg~sr~tvsR~l~~L~~~G~I~~~ 197 (213)
T 1o5l_A 164 PVTLEELSRLFGCARPALSRVFQELEREGYIEKH 197 (213)
T ss_dssp ----------------------------------
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHCCeEEEc
Confidence 5789999999999999999999999999999865
No 233
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=89.37 E-value=0.24 Score=28.43 Aligned_cols=22 Identities=9% Similarity=0.197 Sum_probs=17.0
Q ss_pred CCCCeeecCCCCCccchhhhhh
Q psy5744 125 TSRSSFKCPRCLKTFTDLEPCL 146 (157)
Q Consensus 125 ~~~~~Y~Cp~C~~~Ys~lda~~ 146 (157)
.....|.||+||..+...+.+.
T Consensus 5 ~~~~~~~C~~C~~~i~~~~~~E 26 (39)
T 2i5o_A 5 AAEDQVPCEKCGSLVPVWDMPE 26 (39)
T ss_dssp -CCCEEECTTTCCEEEGGGHHH
T ss_pred CcCCCcccccccCcCCcccccc
Confidence 3567899999999998876554
No 234
>2qc0_A Uncharacterized protein; NP_719793.1, uncharacterized protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Shewanella oneidensis} PDB: 3eqx_A*
Probab=89.36 E-value=0.94 Score=37.55 Aligned_cols=48 Identities=10% Similarity=0.187 Sum_probs=43.2
Q ss_pred CchHHHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 31 IEDSLIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 31 ~e~ivIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
....-|++.|..++.++-+++++.+|++...+|+.|..|.+.|++...
T Consensus 297 ~~~~~ll~~l~~~p~~t~~~~~~~~gvS~~Ta~r~L~~L~e~GiL~~~ 344 (373)
T 2qc0_A 297 IYSHELVQVIFEQPYCRIQNLVESGLAKRQTASVYLKQLCDIGVLEEV 344 (373)
T ss_dssp TCCHHHHHHHHHCSEEEHHHHHHTSSSCHHHHHHHHHHHHHTTSCEEC
T ss_pred hhHHHHHHHHHhCCcccHHHHHHHhCCCHHHHHHHHHHHHHCCcEEEe
Confidence 335678999998999999999999999999999999999999999854
No 235
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=89.12 E-value=0.14 Score=24.66 Aligned_cols=16 Identities=25% Similarity=0.739 Sum_probs=13.3
Q ss_pred eecCCCCCccchhhhh
Q psy5744 130 FKCPRCLKTFTDLEPC 145 (157)
Q Consensus 130 Y~Cp~C~~~Ys~lda~ 145 (157)
|.|+.|++.|+....+
T Consensus 2 ~~C~~C~k~f~~~~~l 17 (27)
T 1znf_A 2 YKCGLCERSFVEKSAL 17 (27)
T ss_dssp CBCSSSCCBCSSHHHH
T ss_pred ccCCCCCCcCCCHHHH
Confidence 8899999999876554
No 236
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*
Probab=89.11 E-value=0.41 Score=38.69 Aligned_cols=77 Identities=13% Similarity=0.177 Sum_probs=49.4
Q ss_pred CCCCCCCcccccchHHHHHHHHHHHHHcCCCc------hHHHHHHHHhC-CCcCHHHHHHHhCCC---hHHHHHHHHHHh
Q psy5744 1 MSTSDEGYVHTEVPTSLKQLSRLVVRGFYSIE------DSLIIDMLVRN-PCMKEDDICELLKFE---RKMLRARISTLK 70 (157)
Q Consensus 1 ~~~~~~~~~~~~ip~~~~~Lv~~v~R~Fy~~e------~ivIlD~L~~~-~~i~dedLa~~l~i~---~k~vRkiL~~L~ 70 (157)
|+.+-+.....++.+.-.+|.+.+. +|.... ..-|.|.|..+ +.++-+|||+.+|++ ..-++++|..|.
T Consensus 1 ~~~~~~~~~~~~~~~a~~~l~~~~~-~~~~~~~l~~a~~lgif~~L~~~~~~~t~~ela~~~~~~~~~~~~l~rlLr~L~ 79 (352)
T 1fp2_A 1 MASSINGRKPSEIFKAQALLYKHIY-AFIDSMSLKWAVEMNIPNIIQNHGKPISLSNLVSILQVPSSKIGNVRRLMRYLA 79 (352)
T ss_dssp -------CCSTHHHHHHHHHHHHHT-THHHHHHHHHHHHTTHHHHHHHHTSCEEHHHHHHHHTCCGGGHHHHHHHHHHHH
T ss_pred CCccccCCChHHHhhHHHHHHHHHH-HHHHHHHHHHHHHCChhhhhhhcCCCccHHHHHHHhCcCCCChHHHHHHHHHHH
Confidence 3333344334455555555554433 333322 23478888764 489999999999995 778999999999
Q ss_pred hCcceeee
Q psy5744 71 NDKIIQTR 78 (157)
Q Consensus 71 ~d~Lv~~~ 78 (157)
..|++...
T Consensus 80 ~~gll~~~ 87 (352)
T 1fp2_A 80 HNGFFEII 87 (352)
T ss_dssp HTTSEEEE
T ss_pred hCCeEEEe
Confidence 99999865
No 237
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=89.11 E-value=0.16 Score=24.72 Aligned_cols=17 Identities=24% Similarity=0.536 Sum_probs=13.9
Q ss_pred eeecCCCCCccchhhhh
Q psy5744 129 SFKCPRCLKTFTDLEPC 145 (157)
Q Consensus 129 ~Y~Cp~C~~~Ys~lda~ 145 (157)
.|.|+.|++.|+....+
T Consensus 3 ~~~C~~C~k~f~~~~~l 19 (28)
T 2kvf_A 3 PYSCSVCGKRFSLKHQM 19 (28)
T ss_dssp SEECSSSCCEESCHHHH
T ss_pred CccCCCCCcccCCHHHH
Confidence 48999999999876544
No 238
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=89.07 E-value=0.7 Score=36.73 Aligned_cols=44 Identities=9% Similarity=0.099 Sum_probs=39.3
Q ss_pred HHHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 34 SLIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 34 ivIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
.-|.|.|. .+.+|-+|||+.+|+++.-++++|..|...|++...
T Consensus 31 lgi~~~l~-~~~~t~~ela~~~~~~~~~l~r~Lr~L~~~g~l~~~ 74 (334)
T 2ip2_A 31 LGLADLIE-SGIDSDETLAAAVGSDAERIHRLMRLLVAFEIFQGD 74 (334)
T ss_dssp TTHHHHHH-TTCCSHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred cCcHHHHh-CCCCCHHHHHHHhCcCHHHHHHHHHHHHhCCceEec
Confidence 44788885 478999999999999999999999999999999864
No 239
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=88.82 E-value=0.33 Score=38.20 Aligned_cols=45 Identities=18% Similarity=0.135 Sum_probs=39.9
Q ss_pred hHHHHHHHHh-CCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceee
Q psy5744 33 DSLIIDMLVR-NPCMKEDDICELLKFERKMLRARISTLKNDKIIQT 77 (157)
Q Consensus 33 ~ivIlD~L~~-~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~ 77 (157)
.+-||++|.. ++.++=.|||+.+|++...+.++|..|.+.|+|..
T Consensus 23 ~l~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~tL~~~G~v~~ 68 (265)
T 2ia2_A 23 GLAVIRCFDHRNQRRTLSDVARATDLTRATARRFLLTLVELGYVAT 68 (265)
T ss_dssp HHHHHHTCCSSCSSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe
Confidence 3568888875 46799999999999999999999999999999975
No 240
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=88.60 E-value=0.62 Score=37.91 Aligned_cols=43 Identities=12% Similarity=0.010 Sum_probs=39.1
Q ss_pred HHHHHHHh-CCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceee
Q psy5744 35 LIIDMLVR-NPCMKEDDICELLKFERKMLRARISTLKNDKIIQT 77 (157)
Q Consensus 35 vIlD~L~~-~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~ 77 (157)
-|.|.|.. .+.+|-+|||+.+|+++.-++++|..|...|++..
T Consensus 39 gifd~L~~~~~~~t~~eLA~~~g~~~~~l~rlLr~l~~~g~l~~ 82 (363)
T 3dp7_A 39 GIFQLLSGKREGYTLQEISGRTGLTRYAAQVLLEASLTIGTILL 82 (363)
T ss_dssp THHHHHHTCTTCBCHHHHHHHHTCCHHHHHHHHHHHHHHTSEEE
T ss_pred CHHHHHHhcCCCCCHHHHHHHhCcCHHHHHHHHHHHhhCCCeEe
Confidence 38899886 47899999999999999999999999999999964
No 241
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=88.47 E-value=0.15 Score=24.95 Aligned_cols=17 Identities=24% Similarity=0.710 Sum_probs=13.6
Q ss_pred eeecCCCCCccchhhhh
Q psy5744 129 SFKCPRCLKTFTDLEPC 145 (157)
Q Consensus 129 ~Y~Cp~C~~~Ys~lda~ 145 (157)
.|.|+.|++.|+....+
T Consensus 3 ~~~C~~C~k~f~~~~~l 19 (27)
T 2kvg_A 3 PYRCPLCRAGCPSLASM 19 (27)
T ss_dssp TEEETTTTEEESCHHHH
T ss_pred CcCCCCCCcccCCHHHH
Confidence 48999999999875543
No 242
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=88.42 E-value=0.21 Score=26.14 Aligned_cols=20 Identities=25% Similarity=0.728 Sum_probs=15.7
Q ss_pred CCCeeecCCCCCccchhhhh
Q psy5744 126 SRSSFKCPRCLKTFTDLEPC 145 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~ 145 (157)
+...|.|+.|++.|+....+
T Consensus 8 ~~k~~~C~~C~k~f~~~~~l 27 (37)
T 1p7a_A 8 GIKPFQCPDCDRSFSRSDHL 27 (37)
T ss_dssp CSSSBCCTTTCCCBSSHHHH
T ss_pred CCCCccCCCCCcccCcHHHH
Confidence 44579999999999876544
No 243
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=88.35 E-value=0.6 Score=36.97 Aligned_cols=43 Identities=5% Similarity=-0.002 Sum_probs=38.7
Q ss_pred HHHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceee
Q psy5744 34 SLIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQT 77 (157)
Q Consensus 34 ivIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~ 77 (157)
.-|.|.|.. +.+|-+|||+.+|+++.-++++|..|...|++..
T Consensus 29 l~i~~~l~~-~~~t~~ela~~~~~~~~~l~r~L~~L~~~g~l~~ 71 (335)
T 2r3s_A 29 LNVFTAISQ-GIESSQSLAQKCQTSERGMRMLCDYLVIIGFMTK 71 (335)
T ss_dssp TTHHHHHTT-SEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred cChHHHHhc-CCCCHHHHHHHhCCCchHHHHHHHHHHhcCCeEe
Confidence 457888774 7899999999999999999999999999999974
No 244
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=88.09 E-value=0.22 Score=24.30 Aligned_cols=17 Identities=24% Similarity=0.700 Sum_probs=13.8
Q ss_pred eeecCCCCCccchhhhh
Q psy5744 129 SFKCPRCLKTFTDLEPC 145 (157)
Q Consensus 129 ~Y~Cp~C~~~Ys~lda~ 145 (157)
.|.|+.|++.|+....+
T Consensus 3 ~~~C~~C~~~f~~~~~l 19 (30)
T 2m0d_A 3 PYQCDYCGRSFSDPTSK 19 (30)
T ss_dssp CEECTTTCCEESCHHHH
T ss_pred CccCCCCCcccCCHHHH
Confidence 58999999999876544
No 245
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=88.03 E-value=0.19 Score=24.45 Aligned_cols=17 Identities=35% Similarity=0.720 Sum_probs=13.7
Q ss_pred eeecCCCCCccchhhhh
Q psy5744 129 SFKCPRCLKTFTDLEPC 145 (157)
Q Consensus 129 ~Y~Cp~C~~~Ys~lda~ 145 (157)
.|.|+.|++.|+....+
T Consensus 2 ~~~C~~C~~~f~~~~~l 18 (29)
T 1ard_A 2 SFVCEVCTRAFARQEHL 18 (29)
T ss_dssp CCBCTTTCCBCSSHHHH
T ss_pred CeECCCCCcccCCHHHH
Confidence 48999999999876544
No 246
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=88.00 E-value=0.19 Score=24.53 Aligned_cols=17 Identities=35% Similarity=0.833 Sum_probs=13.7
Q ss_pred eeecCCCCCccchhhhh
Q psy5744 129 SFKCPRCLKTFTDLEPC 145 (157)
Q Consensus 129 ~Y~Cp~C~~~Ys~lda~ 145 (157)
-|.|+.|++.|+....+
T Consensus 2 ~~~C~~C~k~f~~~~~l 18 (29)
T 1rik_A 2 KFACPECPKRFMRSDHL 18 (29)
T ss_dssp CEECSSSSCEESCSHHH
T ss_pred CccCCCCCchhCCHHHH
Confidence 48999999999876544
No 247
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Probab=87.93 E-value=0.36 Score=26.02 Aligned_cols=31 Identities=13% Similarity=0.266 Sum_probs=21.4
Q ss_pred CCCeeecCCCCCccchhhhhhcc-----CCCCcccC
Q psy5744 126 SRSSFKCPRCLKTFTDLEPCLLV-----LWCACPCK 156 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~~L~-----d~~~F~C~ 156 (157)
+...|.|+.|++.|+....+..- +...|.|+
T Consensus 7 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~ 42 (42)
T 2el5_A 7 GENPYECSECGKAFNRKDQLISHQRTHAGESGPSSG 42 (42)
T ss_dssp SCCSEECSSSCCEESSHHHHHHHHGGGCCCCSCCCC
T ss_pred CCCCccCCCcChhhCCHHHHHHHHHhcCCCCCCCCC
Confidence 34569999999999987665422 23467774
No 248
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=87.73 E-value=0.37 Score=26.19 Aligned_cols=31 Identities=13% Similarity=0.284 Sum_probs=21.5
Q ss_pred CCCeeecCCCCCccchhhhhhcc-----CCCCcccC
Q psy5744 126 SRSSFKCPRCLKTFTDLEPCLLV-----LWCACPCK 156 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~~L~-----d~~~F~C~ 156 (157)
+...|.|+.|++.|+....+..- +...|.|+
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~ 44 (44)
T 2eof_A 9 GEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSSG 44 (44)
T ss_dssp CCCSEECTTTCCEESCHHHHHHHHHHTTTSSCSCCC
T ss_pred CCCCeECCCCCcccCCHhHHHHHHHHhCCCCCCCCC
Confidence 44569999999999987765422 23367775
No 249
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=87.68 E-value=0.29 Score=25.08 Aligned_cols=19 Identities=32% Similarity=0.606 Sum_probs=15.1
Q ss_pred CCeeecCCCCCccchhhhh
Q psy5744 127 RSSFKCPRCLKTFTDLEPC 145 (157)
Q Consensus 127 ~~~Y~Cp~C~~~Ys~lda~ 145 (157)
...|.|+.|++.|+....+
T Consensus 5 ~k~~~C~~C~k~f~~~~~L 23 (35)
T 2elx_A 5 SSGYVCALCLKKFVSSIRL 23 (35)
T ss_dssp CCSEECSSSCCEESSHHHH
T ss_pred CCCeECCCCcchhCCHHHH
Confidence 4569999999999876544
No 250
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=87.60 E-value=0.85 Score=36.33 Aligned_cols=44 Identities=9% Similarity=0.034 Sum_probs=39.3
Q ss_pred HHHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 34 SLIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 34 ivIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
.-|.|.|. .+.+|-+|||+.+|+++..++++|..|...|++...
T Consensus 28 lglf~~l~-~g~~t~~elA~~~~~~~~~l~rlLr~l~~~gl~~~~ 71 (332)
T 3i53_A 28 LRVADHIA-AGHRTAAEIASAAGAHADSLDRLLRHLVAVGLFTRD 71 (332)
T ss_dssp HTHHHHHH-TTCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred cChHHHHh-cCCCCHHHHHHHHCcCHHHHHHHHHHHHhCCcEEec
Confidence 34888886 578999999999999999999999999999999863
No 251
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=87.58 E-value=0.24 Score=24.00 Aligned_cols=17 Identities=35% Similarity=0.610 Sum_probs=13.5
Q ss_pred eeecCCCCCccchhhhh
Q psy5744 129 SFKCPRCLKTFTDLEPC 145 (157)
Q Consensus 129 ~Y~Cp~C~~~Ys~lda~ 145 (157)
.|.|+.|++.|+....+
T Consensus 2 ~~~C~~C~k~f~~~~~l 18 (29)
T 2m0f_A 2 PLKCRECGKQFTTSGNL 18 (29)
T ss_dssp CEECTTTSCEESCHHHH
T ss_pred CccCCCCCCccCChhHH
Confidence 48999999999865543
No 252
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=87.41 E-value=0.11 Score=25.10 Aligned_cols=17 Identities=29% Similarity=0.665 Sum_probs=13.4
Q ss_pred eeecCCCCCccchhhhh
Q psy5744 129 SFKCPRCLKTFTDLEPC 145 (157)
Q Consensus 129 ~Y~Cp~C~~~Ys~lda~ 145 (157)
-|.|+.|++.|+....+
T Consensus 2 p~~C~~C~k~f~~~~~l 18 (26)
T 2lvu_A 2 PYVCERCGKRFVQSSQL 18 (26)
Confidence 48999999999875443
No 253
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=87.37 E-value=1.3 Score=26.54 Aligned_cols=38 Identities=18% Similarity=0.421 Sum_probs=30.8
Q ss_pred HHHHHHHhCCCcCHHHHHHHh-----CCChHHHHHHHHHHhhCcce
Q psy5744 35 LIIDMLVRNPCMKEDDICELL-----KFERKMLRARISTLKNDKII 75 (157)
Q Consensus 35 vIlD~L~~~~~i~dedLa~~l-----~i~~k~vRkiL~~L~~d~Lv 75 (157)
+|+..|-.++.++-+||++.+ +++...|++.|..| |++
T Consensus 9 ~i~~ll~~~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~~l---g~v 51 (64)
T 2p5k_A 9 KIREIITSNEIETQDELVDMLKQDGYKVTQATVSRDIKEL---HLV 51 (64)
T ss_dssp HHHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHHHH---TCE
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHHHc---CCE
Confidence 344444457899999999999 99999999999944 677
No 254
>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.36 E-value=0.42 Score=26.10 Aligned_cols=31 Identities=16% Similarity=0.327 Sum_probs=21.3
Q ss_pred CCCeeecCCCCCccchhhhhhcc-----CCCCcccC
Q psy5744 126 SRSSFKCPRCLKTFTDLEPCLLV-----LWCACPCK 156 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~~L~-----d~~~F~C~ 156 (157)
+...|.|+.|++.|+....+..- +...|.|+
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~ 44 (44)
T 2emb_A 9 TRKRYECSKCQATFNLRKHLIQHQKTHAAKSGPSSG 44 (44)
T ss_dssp CCSSEECTTTCCEESCHHHHHHHGGGGCCCCCTTCC
T ss_pred CCCCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCC
Confidence 44579999999999987655422 12357774
No 255
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=87.31 E-value=0.29 Score=26.74 Aligned_cols=31 Identities=13% Similarity=0.239 Sum_probs=21.6
Q ss_pred CCCeeecCCCCCccchhhhhhcc-----CCCCcccC
Q psy5744 126 SRSSFKCPRCLKTFTDLEPCLLV-----LWCACPCK 156 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~~L~-----d~~~F~C~ 156 (157)
+...|.|+.|++.|+....+..- +...|.|+
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~ 44 (44)
T 2eoj_A 9 GENPYECCECGKVFSRKDQLVSHQKTHSGQSGPSSG 44 (44)
T ss_dssp SCCSCEETTTTEECSSHHHHHHHHTTSSSSCSCCCC
T ss_pred CCcCeeCCCCCCccCCHHHHHHHHHHcCCCCCCCCC
Confidence 34569999999999987765422 12367775
No 256
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=87.29 E-value=0.3 Score=27.01 Aligned_cols=32 Identities=13% Similarity=0.096 Sum_probs=22.0
Q ss_pred CCCeeecCCCCCccchhhhhhcc-----CCCCcccCC
Q psy5744 126 SRSSFKCPRCLKTFTDLEPCLLV-----LWCACPCKR 157 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~~L~-----d~~~F~C~~ 157 (157)
+...|.|+.|++.|+....+.-- +...|.|++
T Consensus 9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~ 45 (46)
T 2en3_A 9 GEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPSS 45 (46)
T ss_dssp CCCSEECSSSCCEESSSHHHHHHHHHHHHSCCSSCSC
T ss_pred CCCCeeCcccChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence 34569999999999887655322 234677764
No 257
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=86.97 E-value=0.37 Score=25.02 Aligned_cols=20 Identities=30% Similarity=0.456 Sum_probs=15.7
Q ss_pred CCCeeecCCCCCccchhhhh
Q psy5744 126 SRSSFKCPRCLKTFTDLEPC 145 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~ 145 (157)
....|.|+.|++.|+....+
T Consensus 6 ~~k~~~C~~C~k~f~~~~~l 25 (36)
T 2els_A 6 SGKIFTCEYCNKVFKFKHSL 25 (36)
T ss_dssp CCCCEECTTTCCEESSHHHH
T ss_pred CCCCEECCCCCceeCCHHHH
Confidence 44579999999999876544
No 258
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=86.86 E-value=0.47 Score=26.23 Aligned_cols=31 Identities=13% Similarity=0.236 Sum_probs=22.2
Q ss_pred CCCeeecCCCCCccchhhhhhcc-----CCCCcccC
Q psy5744 126 SRSSFKCPRCLKTFTDLEPCLLV-----LWCACPCK 156 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~~L~-----d~~~F~C~ 156 (157)
+...|.|+.|++.|+....+..- +...|.|+
T Consensus 9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~ 44 (46)
T 2ytp_A 9 GERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPS 44 (46)
T ss_dssp CCCCEECSSSCCEESSHHHHHHHHTTTSCCCCCSSC
T ss_pred CCCCeECCcCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence 45579999999999987765432 12367776
No 259
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=86.65 E-value=0.38 Score=24.70 Aligned_cols=19 Identities=37% Similarity=0.887 Sum_probs=15.2
Q ss_pred CCeeecCCCCCccchhhhh
Q psy5744 127 RSSFKCPRCLKTFTDLEPC 145 (157)
Q Consensus 127 ~~~Y~Cp~C~~~Ys~lda~ 145 (157)
...|.|+.|++.|+....+
T Consensus 5 ~k~~~C~~C~k~f~~~~~l 23 (35)
T 1srk_A 5 KRPFVCRICLSAFTTKANC 23 (35)
T ss_dssp CSCEECSSSCCEESSHHHH
T ss_pred CcCeeCCCCCcccCCHHHH
Confidence 4569999999999876544
No 260
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=86.64 E-value=0.5 Score=25.96 Aligned_cols=31 Identities=13% Similarity=0.096 Sum_probs=21.9
Q ss_pred CCCeeecCCCCCccchhhhhhcc-----CCCCcccC
Q psy5744 126 SRSSFKCPRCLKTFTDLEPCLLV-----LWCACPCK 156 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~~L~-----d~~~F~C~ 156 (157)
....|.|+.|++.|+....+..- +...|.|+
T Consensus 9 ~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~C~ 44 (46)
T 2eor_A 9 GEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS 44 (46)
T ss_dssp CCCSEECTTTCCEESSHHHHHHHHHHHHSCCCSSST
T ss_pred CCcCccCCCCCCCcCCHHHHHHHHHhcCCCCCCCCC
Confidence 34569999999999987765422 23467776
No 261
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=86.53 E-value=0.36 Score=25.49 Aligned_cols=20 Identities=15% Similarity=0.253 Sum_probs=15.5
Q ss_pred CCCeeecCCCCCccchhhhh
Q psy5744 126 SRSSFKCPRCLKTFTDLEPC 145 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~ 145 (157)
+...|.|+.|++.|+....+
T Consensus 6 ~~k~~~C~~C~k~f~~~~~L 25 (37)
T 2elm_A 6 SGHLYYCSQCHYSSITKNCL 25 (37)
T ss_dssp SSCEEECSSSSCEEECHHHH
T ss_pred CCcCeECCCCCcccCCHHHH
Confidence 34579999999999876543
No 262
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=86.51 E-value=0.89 Score=34.84 Aligned_cols=32 Identities=16% Similarity=0.254 Sum_probs=29.7
Q ss_pred CHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 47 KEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 47 ~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
+-.+||+.+|+++..+.+++.+|.+.|+|...
T Consensus 26 ~~~~La~~l~vs~~tvs~~l~~Le~~GlV~r~ 57 (230)
T 1fx7_A 26 LRARIAERLDQSGPTVSQTVSRMERDGLLRVA 57 (230)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred cHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 34999999999999999999999999999864
No 263
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=86.46 E-value=0.31 Score=36.49 Aligned_cols=14 Identities=29% Similarity=0.636 Sum_probs=12.5
Q ss_pred CCeeecCCCCCccc
Q psy5744 127 RSSFKCPRCLKTFT 140 (157)
Q Consensus 127 ~~~Y~Cp~C~~~Ys 140 (157)
...|+||.||-.|.
T Consensus 136 ~~~~~C~~CG~i~~ 149 (170)
T 3pwf_A 136 KKVYICPICGYTAV 149 (170)
T ss_dssp SCEEECTTTCCEEE
T ss_pred CCeeEeCCCCCeeC
Confidence 35899999999998
No 264
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=86.27 E-value=0.57 Score=31.12 Aligned_cols=31 Identities=19% Similarity=0.274 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHhhcCCCCeeecCCCCCccchhhhh
Q psy5744 110 LDVMRKRMEMEERDATSRSSFKCPRCLKTFTDLEPC 145 (157)
Q Consensus 110 l~~m~~~L~~~~~~~~~~~~Y~Cp~C~~~Ys~lda~ 145 (157)
+.++.++|+.... ..|.||.||+..-+.-+.
T Consensus 13 lRk~vk~ie~~q~-----~~y~Cp~CG~~~v~r~at 43 (83)
T 1vq8_Z 13 SRRRVAEIESEMN-----EDHACPNCGEDRVDRQGT 43 (83)
T ss_dssp HHHHHHHHHHHHH-----SCEECSSSCCEEEEEEET
T ss_pred HHHHHHHHHHhcc-----ccCcCCCCCCcceeccCC
Confidence 5566666666554 379999999865554444
No 265
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=86.22 E-value=0.28 Score=25.60 Aligned_cols=20 Identities=35% Similarity=0.718 Sum_probs=15.9
Q ss_pred CCCeeecCCCCCccchhhhh
Q psy5744 126 SRSSFKCPRCLKTFTDLEPC 145 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~ 145 (157)
+...|.|+.|++.|+....+
T Consensus 6 ~~k~~~C~~C~k~f~~~~~l 25 (37)
T 2elo_A 6 SGRSYSCPVCEKSFSEDRLI 25 (37)
T ss_dssp CCCCCEETTTTEECSSHHHH
T ss_pred CCCCcCCCCCCCccCCHHHH
Confidence 34569999999999876654
No 266
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=86.19 E-value=0.44 Score=26.39 Aligned_cols=31 Identities=16% Similarity=0.134 Sum_probs=22.2
Q ss_pred CCCeeecCCCCCccchhhhhhcc-----CCCCcccC
Q psy5744 126 SRSSFKCPRCLKTFTDLEPCLLV-----LWCACPCK 156 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~~L~-----d~~~F~C~ 156 (157)
....|.|+.|++.|+....+.-- +...|.|+
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~ 44 (46)
T 2eon_A 9 GEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPS 44 (46)
T ss_dssp SCCSCBCSSSCCBCSSHHHHHHHTTTTTSCCSCTTS
T ss_pred CCcccCCCCCCcccCcHHHHHHHHHhcCCCCCCCCC
Confidence 34579999999999987765432 12368886
No 267
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=86.12 E-value=0.38 Score=26.13 Aligned_cols=31 Identities=13% Similarity=0.186 Sum_probs=21.6
Q ss_pred CCCeeecCCCCCccchhhhhhcc-----CCCCcccC
Q psy5744 126 SRSSFKCPRCLKTFTDLEPCLLV-----LWCACPCK 156 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~~L~-----d~~~F~C~ 156 (157)
+...|.|+.|++.|+....+..- +...|.|+
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~ 44 (44)
T 2en7_A 9 GMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSSG 44 (44)
T ss_dssp SSSSSCCTTTCCCCSSHHHHHHHHTTTCCSSSSCCC
T ss_pred CCcCeECCCCCCccCCHHHHHHHhhhcCCCCCCCCC
Confidence 34569999999999987765432 12367775
No 268
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=86.12 E-value=0.38 Score=24.82 Aligned_cols=20 Identities=25% Similarity=0.468 Sum_probs=15.4
Q ss_pred CCCeeecCCCCCccchhhhh
Q psy5744 126 SRSSFKCPRCLKTFTDLEPC 145 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~ 145 (157)
+...|.|+.|++.|+....+
T Consensus 6 ~~k~~~C~~C~k~f~~~~~l 25 (36)
T 2elt_A 6 SGKPYKCPQCSYASAIKANL 25 (36)
T ss_dssp CCCSEECSSSSCEESSHHHH
T ss_pred CCCCCCCCCCCcccCCHHHH
Confidence 34569999999999876543
No 269
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=86.10 E-value=0.85 Score=36.77 Aligned_cols=42 Identities=14% Similarity=0.180 Sum_probs=37.9
Q ss_pred HHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceee
Q psy5744 35 LIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQT 77 (157)
Q Consensus 35 vIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~ 77 (157)
-|.|.|. .+.+|-+|||+.+|+++.-++++|..|...|++..
T Consensus 46 glf~~l~-~g~~t~~elA~~~g~~~~~l~rlLr~l~~~g~l~~ 87 (348)
T 3lst_A 46 GVADHLV-DGPRTPAELAAATGTDADALRRVLRLLAVRDVVRE 87 (348)
T ss_dssp TGGGGGT-TSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CchhHhh-CCCCCHHHHHHHhCcCHHHHHHHHHHHHhCCCEEe
Confidence 3777775 46899999999999999999999999999999986
No 270
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=85.96 E-value=0.26 Score=23.78 Aligned_cols=16 Identities=38% Similarity=0.881 Sum_probs=12.8
Q ss_pred eeecCCCCCccchhhh
Q psy5744 129 SFKCPRCLKTFTDLEP 144 (157)
Q Consensus 129 ~Y~Cp~C~~~Ys~lda 144 (157)
.|.|+.|++.|+....
T Consensus 2 ~~~C~~C~~~f~~~~~ 17 (29)
T 2m0e_A 2 EHKCPHCDKKFNQVGN 17 (29)
T ss_dssp CCCCSSCCCCCCTTTH
T ss_pred CCcCCCCCcccCCHHH
Confidence 4889999999986544
No 271
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=85.95 E-value=0.26 Score=24.20 Aligned_cols=17 Identities=24% Similarity=0.612 Sum_probs=13.5
Q ss_pred eeecCCCCCccchhhhh
Q psy5744 129 SFKCPRCLKTFTDLEPC 145 (157)
Q Consensus 129 ~Y~Cp~C~~~Ys~lda~ 145 (157)
.|.|+.|++.|+....+
T Consensus 2 ~~~C~~C~k~f~~~~~l 18 (30)
T 1paa_A 2 AYACGLCNRAFTRRDLL 18 (30)
T ss_dssp CSBCTTTCCBCSSSHHH
T ss_pred CcCCcccCcccCChHHH
Confidence 48999999999865543
No 272
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=85.90 E-value=0.43 Score=24.74 Aligned_cols=20 Identities=20% Similarity=0.383 Sum_probs=15.7
Q ss_pred CCCeeecCCCCCccchhhhh
Q psy5744 126 SRSSFKCPRCLKTFTDLEPC 145 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~ 145 (157)
....|.|+.|++.|+....+
T Consensus 6 ~~k~~~C~~C~k~f~~~~~l 25 (36)
T 2elv_A 6 SGLLYDCHICERKFKNELDR 25 (36)
T ss_dssp CCCCEECSSSCCEESSHHHH
T ss_pred CCCCeECCCCCCccCCHHHH
Confidence 34579999999999876554
No 273
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=85.86 E-value=0.47 Score=26.13 Aligned_cols=31 Identities=19% Similarity=0.253 Sum_probs=21.8
Q ss_pred CCCeeecCCCCCccchhhhhhcc-----CCCCcccC
Q psy5744 126 SRSSFKCPRCLKTFTDLEPCLLV-----LWCACPCK 156 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~~L~-----d~~~F~C~ 156 (157)
+...|.|+.|++.|+....+..- +...|.|+
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~ 44 (46)
T 2emg_A 9 GENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPS 44 (46)
T ss_dssp SCCSCBCTTTCCBCSSHHHHHHHHTTTSCCCCSCSC
T ss_pred CCCCEECCccCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence 34569999999999987766432 12367775
No 274
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=85.84 E-value=0.44 Score=26.33 Aligned_cols=31 Identities=13% Similarity=0.063 Sum_probs=22.0
Q ss_pred CCCeeecCCCCCccchhhhhhcc-----CCCCcccC
Q psy5744 126 SRSSFKCPRCLKTFTDLEPCLLV-----LWCACPCK 156 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~~L~-----d~~~F~C~ 156 (157)
+...|.|+.|++.|+....+..- +...|.|+
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~ 44 (46)
T 2eoz_A 9 GEKPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44 (46)
T ss_dssp SCCSEEETTTTEEESSHHHHHHHHHHHSSCCSSSCC
T ss_pred CCCCeECcccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence 34569999999999987765422 23467776
No 275
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=85.83 E-value=0.4 Score=24.89 Aligned_cols=20 Identities=25% Similarity=0.378 Sum_probs=15.8
Q ss_pred CCCeeecCCCCCccchhhhh
Q psy5744 126 SRSSFKCPRCLKTFTDLEPC 145 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~ 145 (157)
+...|.|+.|++.|+....+
T Consensus 6 ~~k~~~C~~C~k~f~~~~~l 25 (36)
T 2elq_A 6 SGKPFKCSLCEYATRSKSNL 25 (36)
T ss_dssp CCCSEECSSSSCEESCHHHH
T ss_pred CCCCccCCCCCchhCCHHHH
Confidence 44579999999999876554
No 276
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=85.81 E-value=0.38 Score=24.84 Aligned_cols=20 Identities=25% Similarity=0.391 Sum_probs=15.6
Q ss_pred CCCeeecCCCCCccchhhhh
Q psy5744 126 SRSSFKCPRCLKTFTDLEPC 145 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~ 145 (157)
....|.|+.|++.|+....+
T Consensus 6 ~~~~~~C~~C~k~f~~~~~l 25 (36)
T 2elr_A 6 SGKTHLCDMCGKKFKSKGTL 25 (36)
T ss_dssp CCSSCBCTTTCCBCSSHHHH
T ss_pred CCCCeecCcCCCCcCchHHH
Confidence 34569999999999876544
No 277
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=85.80 E-value=1.3 Score=39.13 Aligned_cols=46 Identities=11% Similarity=0.198 Sum_probs=40.2
Q ss_pred hHHHHHHHHhCCCcCHHHHHHHhC-------CChHHHHHHHHHHhhCcceeee
Q psy5744 33 DSLIIDMLVRNPCMKEDDICELLK-------FERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 33 ~ivIlD~L~~~~~i~dedLa~~l~-------i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
+-.|++.+-.++.++..+||..+| +.....+..|..+.++|++-..
T Consensus 496 ~~~il~l~~~~g~vT~~~la~~lg~~~~~~~Ws~~~A~e~L~~~e~eG~l~rD 548 (566)
T 1w7p_D 496 KEKLVDLIGDNPGSDLLRLTQILSSNNSKSNWTLGILMEVLQNCVDEGDLLID 548 (566)
T ss_dssp HHHHHHHHTTSTTCCHHHHHHHHSCSSSCCCBCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHhcCCcCHHHHHHHhCCccccCcccHHHHHHHHHHHHHcCCEEEE
Confidence 445666655579999999999999 9999999999999999999854
No 278
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=85.78 E-value=0.6 Score=27.61 Aligned_cols=29 Identities=14% Similarity=0.186 Sum_probs=18.3
Q ss_pred CeeecCCCCCccchhhhh-hcc-C-CCCcccC
Q psy5744 128 SSFKCPRCLKTFTDLEPC-LLV-L-WCACPCK 156 (157)
Q Consensus 128 ~~Y~Cp~C~~~Ys~lda~-~L~-d-~~~F~C~ 156 (157)
..|+|+.||-.|....-. .-+ | +..+.||
T Consensus 3 ~~y~C~vCGyvyd~~~Gd~t~f~~lP~dw~CP 34 (46)
T 6rxn_A 3 QKYVCNVCGYEYDPAEHDNVPFDQLPDDWCCP 34 (46)
T ss_dssp CCEEETTTCCEECGGGGTTCCGGGSCTTCBCT
T ss_pred CEEECCCCCeEEeCCcCCCcchhhCCCCCcCc
Confidence 469999999888764333 111 1 2457777
No 279
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=85.50 E-value=0.51 Score=26.08 Aligned_cols=31 Identities=26% Similarity=0.298 Sum_probs=22.0
Q ss_pred CCCeeecCCCCCccchhhhhhcc-----CCCCcccC
Q psy5744 126 SRSSFKCPRCLKTFTDLEPCLLV-----LWCACPCK 156 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~~L~-----d~~~F~C~ 156 (157)
+...|.|+.|++.|+....+..- +...|.|+
T Consensus 9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~ 44 (46)
T 2en9_A 9 GKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPS 44 (46)
T ss_dssp SSCCCBCTTTCCBCSSHHHHHHHHHHHTSSCCCSCC
T ss_pred CCCCEECCccCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence 34579999999999987765432 23467776
No 280
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=85.44 E-value=0.57 Score=25.73 Aligned_cols=31 Identities=16% Similarity=0.277 Sum_probs=22.1
Q ss_pred CCCeeecCCCCCccchhhhhhcc-----CCCCcccC
Q psy5744 126 SRSSFKCPRCLKTFTDLEPCLLV-----LWCACPCK 156 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~~L~-----d~~~F~C~ 156 (157)
+...|.|+.|++.|+....+..- +...|.|+
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~ 44 (46)
T 2ytf_A 9 GEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPS 44 (46)
T ss_dssp CCCSEECSSSCCEESSHHHHHHHHHTSCSSSSSCCC
T ss_pred CCCCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence 44579999999999987766432 22367776
No 281
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Probab=85.32 E-value=0.44 Score=25.60 Aligned_cols=21 Identities=24% Similarity=0.540 Sum_probs=16.5
Q ss_pred CCCeeecCCCCCccchhhhhh
Q psy5744 126 SRSSFKCPRCLKTFTDLEPCL 146 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~~ 146 (157)
+...|.|+.|++.|+....+.
T Consensus 8 ~~~~~~C~~C~k~f~~~~~l~ 28 (42)
T 2epc_A 8 GETPYLCGQCGKSFTQRGSLA 28 (42)
T ss_dssp SSCCEECSSSCCEESSHHHHH
T ss_pred CCCCeECCCCCcccCCHHHHH
Confidence 345699999999998876554
No 282
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Probab=85.24 E-value=0.61 Score=25.65 Aligned_cols=31 Identities=16% Similarity=0.138 Sum_probs=22.1
Q ss_pred CCCeeecCCCCCccchhhhhhcc-----CCCCcccC
Q psy5744 126 SRSSFKCPRCLKTFTDLEPCLLV-----LWCACPCK 156 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~~L~-----d~~~F~C~ 156 (157)
+...|.|+.|++.|+....+..- +...|.|+
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~ 44 (46)
T 2ema_A 9 GEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPS 44 (46)
T ss_dssp TSCCEECSSSCCEESSHHHHHHHHTGGGCCCCCSSS
T ss_pred CCcCcCCCCCcchhCCHHHHHHHHHhcCCCCCCCCC
Confidence 44579999999999987765432 23467776
No 283
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=85.22 E-value=0.29 Score=25.32 Aligned_cols=17 Identities=35% Similarity=0.833 Sum_probs=13.8
Q ss_pred eeecCCCCCccchhhhh
Q psy5744 129 SFKCPRCLKTFTDLEPC 145 (157)
Q Consensus 129 ~Y~Cp~C~~~Ys~lda~ 145 (157)
-|.|+.|++.|+....+
T Consensus 2 p~~C~~C~k~F~~~~~L 18 (33)
T 1rim_A 2 KFACPECPKRFMRSDHL 18 (33)
T ss_dssp CCCCSSSCCCCSSHHHH
T ss_pred cccCCCCCchhCCHHHH
Confidence 48999999999876554
No 284
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=85.19 E-value=1.2 Score=35.53 Aligned_cols=42 Identities=5% Similarity=0.065 Sum_probs=37.3
Q ss_pred HHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 35 LIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 35 vIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
-|.|.|- . .+|-+|||+.+|+++..++++|..|...|++...
T Consensus 48 gif~~l~-~-~~t~~elA~~~~~~~~~l~rlLr~L~~~gll~~~ 89 (352)
T 3mcz_A 48 KLFDLTQ-T-GRTPAEVAASFGMVEGKAAILLHALAALGLLTKE 89 (352)
T ss_dssp THHHHTT-S-CBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred ChHHHhC-C-CCCHHHHHHHhCcChHHHHHHHHHHHHCCCeEec
Confidence 3777774 3 8999999999999999999999999999999853
No 285
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=85.18 E-value=1 Score=29.14 Aligned_cols=42 Identities=12% Similarity=0.180 Sum_probs=37.8
Q ss_pred HHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 37 IDMLVRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 37 lD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
++++-.+.++.=+|||..+|++..++..-+..|.++|.++=.
T Consensus 13 i~yIk~~Kvv~LedLA~~F~l~t~~~i~RI~~Le~~g~ltGV 54 (72)
T 1wi9_A 13 INYIKKSKVVLLEDLAFQMGLRTQDAINRIQDLLTEGTLTGV 54 (72)
T ss_dssp HHHHHHCSEECHHHHHHHHCSCHHHHHHHHHHHHHHSSSCEE
T ss_pred HHHHHHcCeeeHHHHHHHhCCChHHHHHHHHHHHHCCCeEEE
Confidence 566667899999999999999999999999999999998754
No 286
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=85.35 E-value=0.17 Score=24.87 Aligned_cols=17 Identities=29% Similarity=0.555 Sum_probs=13.6
Q ss_pred eeecCCCCCccchhhhh
Q psy5744 129 SFKCPRCLKTFTDLEPC 145 (157)
Q Consensus 129 ~Y~Cp~C~~~Ys~lda~ 145 (157)
.|.|+.|++.|+....+
T Consensus 2 ~~~C~~C~k~f~~~~~l 18 (29)
T 2lvt_A 2 PCQCVMCGKAFTQASSL 18 (29)
Confidence 48999999999876543
No 287
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=85.02 E-value=0.75 Score=25.25 Aligned_cols=31 Identities=16% Similarity=0.140 Sum_probs=22.0
Q ss_pred CCCeeecCCCCCccchhhhhhcc-----CCCCcccC
Q psy5744 126 SRSSFKCPRCLKTFTDLEPCLLV-----LWCACPCK 156 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~~L~-----d~~~F~C~ 156 (157)
+...|.|+.|++.|+....+..- +...|.|+
T Consensus 9 ~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~ 44 (46)
T 2ytg_A 9 GEKPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGPS 44 (46)
T ss_dssp SCCSEECTTTCCEESSSHHHHTTGGGGSSCCSSCSC
T ss_pred CCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence 44579999999999987766432 22367775
No 288
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=85.01 E-value=0.52 Score=30.36 Aligned_cols=18 Identities=11% Similarity=0.399 Sum_probs=15.4
Q ss_pred CCCeeecCCCCCccchhh
Q psy5744 126 SRSSFKCPRCLKTFTDLE 143 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~ld 143 (157)
....|+|+.||..|+..+
T Consensus 25 ~~v~Y~C~~CG~~~e~~~ 42 (70)
T 1twf_L 25 ATLKYICAECSSKLSLSR 42 (70)
T ss_dssp CCCCEECSSSCCEECCCT
T ss_pred ceEEEECCCCCCcceeCC
Confidence 567899999999998763
No 289
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=84.98 E-value=0.58 Score=25.74 Aligned_cols=31 Identities=19% Similarity=0.186 Sum_probs=22.1
Q ss_pred CCCeeecCCCCCccchhhhhhcc-----CCCCcccC
Q psy5744 126 SRSSFKCPRCLKTFTDLEPCLLV-----LWCACPCK 156 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~~L~-----d~~~F~C~ 156 (157)
+...|.|+.|++.|+....+..- +...|.|+
T Consensus 9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~ 44 (46)
T 2ytn_A 9 GKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44 (46)
T ss_dssp CCSSCBCTTTCCBCSSHHHHHHHGGGTSCCCCCSCC
T ss_pred CCcCeECCCCCCeeCCHHHHHHHhhhcCCCCCCCCC
Confidence 45579999999999987765432 23367776
No 290
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=84.93 E-value=0.41 Score=26.39 Aligned_cols=31 Identities=19% Similarity=0.161 Sum_probs=22.0
Q ss_pred CCCeeecCCCCCccchhhhhhcc-----CCCCcccC
Q psy5744 126 SRSSFKCPRCLKTFTDLEPCLLV-----LWCACPCK 156 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~~L~-----d~~~F~C~ 156 (157)
+...|.|+.|++.|+....+..- +...|.|+
T Consensus 9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~ 44 (46)
T 2yti_A 9 GEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGPS 44 (46)
T ss_dssp CCCTTCCSSSCCCCSSHHHHHHHHTTTSCSCCSSTT
T ss_pred CCcCeECCCCCcccCChhHHHHHhHhcCCCCCCCCC
Confidence 44569999999999987765432 12367886
No 291
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=84.92 E-value=0.51 Score=25.98 Aligned_cols=31 Identities=16% Similarity=0.148 Sum_probs=21.8
Q ss_pred CCCeeecCCCCCccchhhhhhcc-----CCCCcccC
Q psy5744 126 SRSSFKCPRCLKTFTDLEPCLLV-----LWCACPCK 156 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~~L~-----d~~~F~C~ 156 (157)
+...|.|+.|++.|+....+..- +...|.|+
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~ 44 (46)
T 2eq1_A 9 GEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS 44 (46)
T ss_dssp CSCCCCCTTTTCCCSSHHHHHHHHTTTCCSCCSSCC
T ss_pred CCCCeECCcCChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence 44579999999999887665432 12367776
No 292
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=84.90 E-value=0.46 Score=24.78 Aligned_cols=17 Identities=35% Similarity=0.596 Sum_probs=13.9
Q ss_pred CCCeeecCCCCCccchh
Q psy5744 126 SRSSFKCPRCLKTFTDL 142 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~l 142 (157)
....|.|+.|++.|+..
T Consensus 6 ~~k~~~C~~C~k~f~~~ 22 (37)
T 2elp_A 6 SGRAMKCPYCDFYFMKN 22 (37)
T ss_dssp CCCCEECSSSSCEECSS
T ss_pred CCCCeECCCCChhhccC
Confidence 34569999999999875
No 293
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=84.88 E-value=0.73 Score=37.59 Aligned_cols=42 Identities=12% Similarity=0.108 Sum_probs=37.9
Q ss_pred HHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceee
Q psy5744 35 LIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQT 77 (157)
Q Consensus 35 vIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~ 77 (157)
-|.|.|. .+.+|-+|||+.+|+++..++++|..|...|++..
T Consensus 62 glf~~l~-~g~~t~~eLA~~~g~~~~~l~rlLr~L~~~g~l~~ 103 (369)
T 3gwz_A 62 GVPELLQ-EGPRTATALAEATGAHEQTLRRLLRLLATVGVFDD 103 (369)
T ss_dssp TTGGGGT-TSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSEE
T ss_pred Chhhhhc-CCCCCHHHHHHHHCcCHHHHHHHHHHHHhCCCEEE
Confidence 3777776 56899999999999999999999999999999986
No 294
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Probab=84.77 E-value=0.22 Score=25.51 Aligned_cols=17 Identities=35% Similarity=0.860 Sum_probs=13.9
Q ss_pred eeecCCCCCccchhhhh
Q psy5744 129 SFKCPRCLKTFTDLEPC 145 (157)
Q Consensus 129 ~Y~Cp~C~~~Ys~lda~ 145 (157)
-|.|+.|++.|+....+
T Consensus 2 p~~C~~C~k~f~~~~~L 18 (32)
T 2kfq_A 2 AFACPACPKRFMRSDAL 18 (32)
T ss_dssp CSSSSSSCTTHHHHHTT
T ss_pred CCCCCCCCcccCCHHHH
Confidence 48999999999876554
No 295
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=84.62 E-value=0.54 Score=25.68 Aligned_cols=31 Identities=13% Similarity=0.156 Sum_probs=21.1
Q ss_pred CCCeeecCCCCCccchhhhhhcc-----CCCCcccC
Q psy5744 126 SRSSFKCPRCLKTFTDLEPCLLV-----LWCACPCK 156 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~~L~-----d~~~F~C~ 156 (157)
....|.|+.|++.|+....+..- +...|.|+
T Consensus 9 ~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~ 44 (44)
T 2eou_A 9 AKTTSECQECGKIFRHSSLLIEHQALHAGESGPSSG 44 (44)
T ss_dssp SSCCCCCTTTCCCCSSHHHHHHHHHHHTTSCCCCCC
T ss_pred CCcCeECCCCCcccCCHHHHHHHHHHHCCCCCCCCC
Confidence 34569999999999987655422 23357774
No 296
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Probab=84.58 E-value=0.86 Score=37.08 Aligned_cols=45 Identities=11% Similarity=0.180 Sum_probs=39.3
Q ss_pred HHHHHHHHhCC-C---cCHHHHHHHhCC------ChHHHHHHHHHHhhCcceeee
Q psy5744 34 SLIIDMLVRNP-C---MKEDDICELLKF------ERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 34 ivIlD~L~~~~-~---i~dedLa~~l~i------~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
.-|+|.|..++ . +|-+|||+.+|+ ++.-++++|..|...|++...
T Consensus 47 lgif~~L~~~g~pg~~~t~~eLA~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~ 101 (372)
T 1fp1_D 47 LNLFEIIAKATPPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLASYSVLTST 101 (372)
T ss_dssp TTHHHHHHTCSSTTCCBCHHHHHTTSCGGGCCTTHHHHHHHHHHHHHHTTSEEEE
T ss_pred CChHHHHHhcCCCCCCcCHHHHHHhcCCCCCCCcChHHHHHHHHHHhhCCceEec
Confidence 45889988654 4 999999999999 678999999999999999865
No 297
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=84.54 E-value=0.44 Score=25.58 Aligned_cols=21 Identities=24% Similarity=0.672 Sum_probs=16.6
Q ss_pred CCCeeecCCCCCccchhhhhh
Q psy5744 126 SRSSFKCPRCLKTFTDLEPCL 146 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~~ 146 (157)
+...|.|+.|++.|+....+.
T Consensus 7 ~~k~~~C~~C~k~f~~~~~L~ 27 (42)
T 2yte_A 7 GEKPYSCAECKETFSDNNRLV 27 (42)
T ss_dssp SCCSCBCTTTCCBCSSHHHHH
T ss_pred CCCCeECCCCCCccCCHHHHH
Confidence 345699999999999876654
No 298
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=84.53 E-value=0.47 Score=26.08 Aligned_cols=31 Identities=13% Similarity=0.148 Sum_probs=22.2
Q ss_pred CCCeeecCCCCCccchhhhhhcc-----CCCCcccC
Q psy5744 126 SRSSFKCPRCLKTFTDLEPCLLV-----LWCACPCK 156 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~~L~-----d~~~F~C~ 156 (157)
+...|.|+.|++.|+....+..- +...|.|+
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~ 44 (46)
T 2eq3_A 9 GEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44 (46)
T ss_dssp CCCSSEETTTTEECSSHHHHHHHHTTSCCCCCCCSC
T ss_pred CCCCeECCCCChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence 44579999999999987765432 23368886
No 299
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=84.44 E-value=0.29 Score=37.09 Aligned_cols=17 Identities=12% Similarity=0.430 Sum_probs=13.7
Q ss_pred CeeecCCCCCccchhhh
Q psy5744 128 SSFKCPRCLKTFTDLEP 144 (157)
Q Consensus 128 ~~Y~Cp~C~~~Ys~lda 144 (157)
..|+|+.||-.|+-.++
T Consensus 154 ~~~~C~~CG~~~~g~~~ 170 (191)
T 1lko_A 154 TKWRCRNCGYVHEGTGA 170 (191)
T ss_dssp EEEEETTTCCEEEEEEC
T ss_pred ceEEECCCCCEeeCCCC
Confidence 38999999999985443
No 300
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=84.41 E-value=0.29 Score=23.79 Aligned_cols=16 Identities=19% Similarity=0.470 Sum_probs=12.9
Q ss_pred eeecCCCCCccchhhh
Q psy5744 129 SFKCPRCLKTFTDLEP 144 (157)
Q Consensus 129 ~Y~Cp~C~~~Ys~lda 144 (157)
.|.|+.|++.|+....
T Consensus 2 ~~~C~~C~k~f~~~~~ 17 (30)
T 1klr_A 2 TYQCQYCEFRSADSSN 17 (30)
T ss_dssp CCCCSSSSCCCSCSHH
T ss_pred CccCCCCCCccCCHHH
Confidence 4899999999986544
No 301
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*
Probab=84.41 E-value=1.1 Score=36.06 Aligned_cols=45 Identities=16% Similarity=0.205 Sum_probs=39.4
Q ss_pred HHHHHHHHhC-CCcCHHHHHHHhCC---ChHHHHHHHHHHhhCcceeee
Q psy5744 34 SLIIDMLVRN-PCMKEDDICELLKF---ERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 34 ivIlD~L~~~-~~i~dedLa~~l~i---~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
.-|+|.|..+ +.+|-+|||+.+|+ +..-++++|..|...|++...
T Consensus 33 lgif~~L~~~~~~~t~~eLA~~~g~~~~~~~~l~rlLr~L~~~gll~~~ 81 (358)
T 1zg3_A 33 LGIADAIHNHGKPMTLSELASSLKLHPSKVNILHRFLRLLTHNGFFAKT 81 (358)
T ss_dssp HTHHHHHHHHTSCEEHHHHHHHTTCCTTTHHHHHHHHHHHHHTTSEEEE
T ss_pred CChHhHHhhcCCCcCHHHHHHhcCCCCcchHHHHHHHHHHhhCCcEEEe
Confidence 4488888865 48999999999999 588999999999999999865
No 302
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=84.32 E-value=0.45 Score=25.54 Aligned_cols=21 Identities=19% Similarity=0.643 Sum_probs=16.7
Q ss_pred CCCeeecCCCCCccchhhhhh
Q psy5744 126 SRSSFKCPRCLKTFTDLEPCL 146 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~~ 146 (157)
+...|.|+.|++.|+....+.
T Consensus 8 ~~k~~~C~~C~k~f~~~~~L~ 28 (42)
T 2ytb_A 8 GEKPYRCDQCGKAFSQKGSLI 28 (42)
T ss_dssp SCCSBCCTTTTCCBSSHHHHH
T ss_pred CCCCeeCCCccchhCCHHHHH
Confidence 345799999999999876654
No 303
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=84.58 E-value=0.2 Score=24.61 Aligned_cols=17 Identities=24% Similarity=0.665 Sum_probs=13.7
Q ss_pred eeecCCCCCccchhhhh
Q psy5744 129 SFKCPRCLKTFTDLEPC 145 (157)
Q Consensus 129 ~Y~Cp~C~~~Ys~lda~ 145 (157)
.|.|+.|++.|+....+
T Consensus 3 ~~~C~~C~k~f~~~~~l 19 (30)
T 2lvr_A 3 PYVCIHCQRQFADPGAL 19 (30)
Confidence 48999999999876543
No 304
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=84.07 E-value=0.54 Score=25.28 Aligned_cols=21 Identities=19% Similarity=0.506 Sum_probs=16.6
Q ss_pred CCCeeecCCCCCccchhhhhh
Q psy5744 126 SRSSFKCPRCLKTFTDLEPCL 146 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~~ 146 (157)
+...|.|+.|++.|+....+.
T Consensus 8 ~~k~~~C~~C~k~f~~~~~L~ 28 (42)
T 2en2_A 8 GEKPYKCETCGARFVQVAHLR 28 (42)
T ss_dssp SSCSEECTTTCCEESSHHHHH
T ss_pred CCCCEeCCCcChhhCCHHHHH
Confidence 345799999999999876654
No 305
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=83.84 E-value=0.62 Score=25.63 Aligned_cols=31 Identities=13% Similarity=0.130 Sum_probs=21.8
Q ss_pred CCCeeecCCCCCccchhhhhhcc-----CCCCcccC
Q psy5744 126 SRSSFKCPRCLKTFTDLEPCLLV-----LWCACPCK 156 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~~L~-----d~~~F~C~ 156 (157)
+...|.|+.|++.|+....+..- +...|.|+
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~ 44 (46)
T 2ysp_A 9 GEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPS 44 (46)
T ss_dssp SCCSEEETTTTEEESCHHHHHHHHTTSCSCCSSCCS
T ss_pred CCCCeECCCCCCccCCHHHHHHHHHhhCCCCCCCCC
Confidence 44579999999999987765432 12357776
No 306
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=83.82 E-value=0.21 Score=44.15 Aligned_cols=43 Identities=12% Similarity=0.135 Sum_probs=0.0
Q ss_pred HHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceee
Q psy5744 35 LIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQT 77 (157)
Q Consensus 35 vIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~ 77 (157)
+|++.|-.++.++-.|+++.+|++..+++++|.+|.++|++..
T Consensus 520 ~I~~~l~~~g~it~~di~~l~~ls~~qa~~~L~~Lv~~G~l~~ 562 (583)
T 3lmm_A 520 AAMLWLSEVGDLATSDLMAMCGVSRGTAKACVDGLVDEERVVA 562 (583)
T ss_dssp -------------------------------------------
T ss_pred HHHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEE
Confidence 6888888899999999999999999999999999999999864
No 307
>1stz_A Heat-inducible transcription repressor HRCA homol; circe element, structural genomics, BSGC structure FUN NIH, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.51 d.110.2.3
Probab=83.81 E-value=1.6 Score=35.79 Aligned_cols=49 Identities=10% Similarity=0.144 Sum_probs=41.4
Q ss_pred CCchHHHHH-----HHHhCCCcCHHHHHHHh--CCChHHHHHHHHHHhhCcceeee
Q psy5744 30 SIEDSLIID-----MLVRNPCMKEDDICELL--KFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 30 ~~e~ivIlD-----~L~~~~~i~dedLa~~l--~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
.+.+-.|++ .+-.++.++=.+||+.+ |+++..||+-|..|++.|++..-
T Consensus 16 ~eR~~~IL~~i~~~yl~~~~pV~s~~La~~~~l~VS~aTIRrDL~~LE~~GlL~r~ 71 (338)
T 1stz_A 16 NDRQRKVLYCIVREYIENKKPVSSQRVLEVSNIEFSSATIRNDMKKLEYLGYIYQP 71 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHCSCBCHHHHHHHSCCCSCHHHHHHHHHHHHHTTSEECC
T ss_pred HHHHHHHHHHHHHHHHHcCCCccHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEEc
Confidence 455666777 44457899999999999 99999999999999999999853
No 308
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=83.78 E-value=1.1 Score=25.97 Aligned_cols=21 Identities=24% Similarity=0.543 Sum_probs=15.8
Q ss_pred CCCCeeecCCCCCccchhhhh
Q psy5744 125 TSRSSFKCPRCLKTFTDLEPC 145 (157)
Q Consensus 125 ~~~~~Y~Cp~C~~~Ys~lda~ 145 (157)
.+...|.|+.|++.|+....+
T Consensus 26 ~~~~~~~C~~C~~~f~~~~~l 46 (60)
T 2adr_A 26 TNEKPYPCGLCNRAFTRRDLL 46 (60)
T ss_dssp TSSCSEECTTTCCEESSHHHH
T ss_pred CCCCCccCCCCCCccCCHHHH
Confidence 345579999999999876654
No 309
>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B
Probab=83.77 E-value=0.36 Score=26.66 Aligned_cols=20 Identities=20% Similarity=0.419 Sum_probs=15.8
Q ss_pred CCCeeecCCCCCccchhhhh
Q psy5744 126 SRSSFKCPRCLKTFTDLEPC 145 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~ 145 (157)
...-|.|+.|++.|+....+
T Consensus 5 gekp~~C~~CgK~F~~~s~L 24 (36)
T 1fv5_A 5 KPARFMCLPCGIAFSSPSTL 24 (36)
T ss_dssp SCCCCEETTTTEECSCHHHH
T ss_pred CccCeECCCCCCccCCHhHc
Confidence 34579999999999876544
No 310
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*
Probab=83.76 E-value=1.5 Score=35.79 Aligned_cols=44 Identities=11% Similarity=0.236 Sum_probs=39.0
Q ss_pred HHHHHHHhC--CCcCHHHHHHHhCC--ChH---HHHHHHHHHhhCcceeee
Q psy5744 35 LIIDMLVRN--PCMKEDDICELLKF--ERK---MLRARISTLKNDKIIQTR 78 (157)
Q Consensus 35 vIlD~L~~~--~~i~dedLa~~l~i--~~k---~vRkiL~~L~~d~Lv~~~ 78 (157)
-|.|+|..+ +.+|-+|||+.+|+ ++. -++++|..|...|++...
T Consensus 44 gifd~L~~~g~~~~t~~eLA~~~g~~~~~~~~~~l~rlLr~L~~~g~l~~~ 94 (364)
T 3p9c_A 44 GLLEILVAAGGKSLTPTEVAAKLPSAANPEAPDMVDRILRLLASYNVVTCL 94 (364)
T ss_dssp THHHHHHHTTTCCBCHHHHHHTTTCTTCTTHHHHHHHHHHHHHHTTSEEEE
T ss_pred ChHHHHhhcCCCCCCHHHHHHhcCCCCCccchhhHHHHHHHHHhCCCEEEe
Confidence 388998875 58999999999998 776 899999999999999875
No 311
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=83.49 E-value=1.1 Score=25.49 Aligned_cols=21 Identities=19% Similarity=0.401 Sum_probs=16.0
Q ss_pred CCCCeeecCCCCCccchhhhh
Q psy5744 125 TSRSSFKCPRCLKTFTDLEPC 145 (157)
Q Consensus 125 ~~~~~Y~Cp~C~~~Ys~lda~ 145 (157)
.+...|.|+.|++.|+....+
T Consensus 25 ~~~~~~~C~~C~~~f~~~~~l 45 (57)
T 1bbo_A 25 TDVRPYHCTYCNFSFKTKGNL 45 (57)
T ss_dssp SSCCCEECSSSSCEESSHHHH
T ss_pred CCCCCccCCCCCchhcCHHHH
Confidence 345679999999999876554
No 312
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=83.42 E-value=0.86 Score=30.33 Aligned_cols=25 Identities=24% Similarity=0.473 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHhhcCCCCeeecCCCCCc
Q psy5744 109 KLDVMRKRMEMEERDATSRSSFKCPRCLKT 138 (157)
Q Consensus 109 rl~~m~~~L~~~~~~~~~~~~Y~Cp~C~~~ 138 (157)
.+.++.++++..... -|.||.||+.
T Consensus 20 slRK~vkkie~~q~~-----ky~CpfCGk~ 44 (83)
T 3j21_i 20 KIRRRVAAVEAKMRQ-----KHTCPVCGRK 44 (83)
T ss_dssp HHHHHHHHHHHHHHS-----CBCCSSSCSS
T ss_pred hHHHHHHHHHHHhhc-----ccCCCCCCCc
Confidence 456666777776544 6889999876
No 313
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=83.41 E-value=0.65 Score=25.47 Aligned_cols=31 Identities=19% Similarity=0.321 Sum_probs=21.7
Q ss_pred CCCeeecCCCCCccchhhhhhcc-----CCCCcccC
Q psy5744 126 SRSSFKCPRCLKTFTDLEPCLLV-----LWCACPCK 156 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~~L~-----d~~~F~C~ 156 (157)
....|.|+.|++.|+....+.-- +...|.|+
T Consensus 9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~ 44 (45)
T 2epu_A 9 GQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSS 44 (45)
T ss_dssp SCCSEEETTTTEEESSHHHHHHHHTTTSSCCCCCSC
T ss_pred CCcCccCCCCCCccCChHHHHHHHHHhCCCCCCCCC
Confidence 34569999999999987665422 23367776
No 314
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Probab=83.34 E-value=0.63 Score=24.65 Aligned_cols=19 Identities=21% Similarity=0.590 Sum_probs=15.2
Q ss_pred CCeeecCCCCCccchhhhh
Q psy5744 127 RSSFKCPRCLKTFTDLEPC 145 (157)
Q Consensus 127 ~~~Y~Cp~C~~~Ys~lda~ 145 (157)
...|.|+.|++.|+....+
T Consensus 4 ~k~~~C~~C~k~f~~~~~L 22 (39)
T 1njq_A 4 PRSYTCSFCKREFRSAQAL 22 (39)
T ss_dssp SSSEECTTTCCEESSHHHH
T ss_pred CCceECCCCCcccCCHHHH
Confidence 3469999999999876554
No 315
>1u5t_A Appears to BE functionally related to SNF7; SNF8P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_A
Probab=83.31 E-value=1.5 Score=34.48 Aligned_cols=60 Identities=7% Similarity=0.031 Sum_probs=47.6
Q ss_pred chHHHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeeeEeeeecCCCceeEEEEEEec
Q psy5744 32 EDSLIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQTRLRMETGLDGKAQKVNYYFIN 98 (157)
Q Consensus 32 e~ivIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~~~~e~~~~gk~~~~~yw~I~ 98 (157)
++..|+.+.-..|.+|.++|+..+|++.-..+..|..|..+|++=.- +. ..| . ..|||-+
T Consensus 168 D~~~vLe~a~~~g~vt~~~L~~~lgW~~~Ra~~~L~~l~~~G~lwvD---~q-~~~-e--~~Yw~P~ 227 (233)
T 1u5t_A 168 DQTKILEICSILGYSSISLLKANLGWEAVRSKSALDEMVANGLLWID---YQ-GGA-E--ALYWDPS 227 (233)
T ss_dssp THHHHHHTTTTTSCCBHHHHHHHHCCCSHHHHHHHHHHHHTTSSEEE---CS-SSS-S--CEEECGG
T ss_pred HHHHHHHHHHhcCcCcHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEe---CC-CCC-c--cceechh
Confidence 36778877666899999999999999999999999999999999854 22 211 1 4788765
No 316
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=83.29 E-value=0.62 Score=25.63 Aligned_cols=31 Identities=13% Similarity=0.184 Sum_probs=21.7
Q ss_pred CCCeeecCCCCCccchhhhhhcc-----CCCCcccC
Q psy5744 126 SRSSFKCPRCLKTFTDLEPCLLV-----LWCACPCK 156 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~~L~-----d~~~F~C~ 156 (157)
+...|.|+.|++.|+....+..- +...|.|+
T Consensus 9 ~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~ 44 (46)
T 2emi_A 9 GERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPS 44 (46)
T ss_dssp SCCCEECSSSCCEESSHHHHHHHHGGGCSCCCCSCC
T ss_pred CCCCCCCCCCCcccCCHHHHHHHHhHhCCCCCCCCC
Confidence 44579999999999987665432 23367775
No 317
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=83.15 E-value=0.68 Score=25.43 Aligned_cols=31 Identities=16% Similarity=0.126 Sum_probs=22.2
Q ss_pred CCCeeecCCCCCccchhhhhhcc-----CCCCcccC
Q psy5744 126 SRSSFKCPRCLKTFTDLEPCLLV-----LWCACPCK 156 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~~L~-----d~~~F~C~ 156 (157)
+...|.|+.|++.|+....+..- +...|.|+
T Consensus 9 ~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~ 44 (46)
T 2en6_A 9 GEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPS 44 (46)
T ss_dssp SSCCEEETTTTEEESSHHHHHHHHHHHSSCCCSSSC
T ss_pred CCcCeECCCCCcccCchHHHHHHHHHcCCCCCCCCC
Confidence 44579999999999987765432 23467775
No 318
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=83.14 E-value=1.1 Score=34.33 Aligned_cols=32 Identities=13% Similarity=0.222 Sum_probs=29.8
Q ss_pred CHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 47 KEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 47 ~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
+-.+||+.+|+++..|.+++.+|.+.|||.+.
T Consensus 26 ~~~~la~~l~vs~~tvs~~l~~Le~~GlV~r~ 57 (226)
T 2qq9_A 26 LRARIAERLEQSGPTVSQTVARMERDGLVVVA 57 (226)
T ss_dssp BHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred cHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe
Confidence 44899999999999999999999999999875
No 319
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=83.02 E-value=0.54 Score=25.89 Aligned_cols=31 Identities=19% Similarity=0.193 Sum_probs=22.0
Q ss_pred CCCeeecCCCCCccchhhhhhcc-----CCCCcccC
Q psy5744 126 SRSSFKCPRCLKTFTDLEPCLLV-----LWCACPCK 156 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~~L~-----d~~~F~C~ 156 (157)
+...|.|+.|++.|+....+..- +...|.|+
T Consensus 9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~ 44 (46)
T 2enf_A 9 GEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPS 44 (46)
T ss_dssp CCCSCBCSSSCCBCSSHHHHHHHHTTTTTSSCCCCS
T ss_pred CCcCeECCCCCcccCCHHHHHHHHHhhCCCCCCCCC
Confidence 45579999999999987765432 12367776
No 320
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=82.94 E-value=0.3 Score=29.82 Aligned_cols=19 Identities=32% Similarity=0.683 Sum_probs=15.4
Q ss_pred hcCCCCeeecCCCCCccch
Q psy5744 123 DATSRSSFKCPRCLKTFTD 141 (157)
Q Consensus 123 ~~~~~~~Y~Cp~C~~~Ys~ 141 (157)
++....+|+|+.||.++..
T Consensus 37 dep~T~fy~C~~Cg~~w~~ 55 (57)
T 1qyp_A 37 DEPSTIFYKCTKCGHTWRS 55 (57)
T ss_dssp SCSSEEEEEESSSCCEEEC
T ss_pred CCCCcEEEEcCCCCCEecc
Confidence 4556789999999998865
No 321
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=82.87 E-value=0.56 Score=25.27 Aligned_cols=21 Identities=19% Similarity=0.490 Sum_probs=16.8
Q ss_pred CCCeeecCCCCCccchhhhhh
Q psy5744 126 SRSSFKCPRCLKTFTDLEPCL 146 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~~ 146 (157)
+...|.|+.|++.|+....+.
T Consensus 8 ~~k~~~C~~C~k~f~~~~~L~ 28 (42)
T 2eos_A 8 GEKPYPCEICGTRFRHLQTLK 28 (42)
T ss_dssp SSCCBCCSSSCCCBSSHHHHH
T ss_pred CCCCEECCCCCCccCCHHHHH
Confidence 345799999999999876654
No 322
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=82.74 E-value=1 Score=33.57 Aligned_cols=30 Identities=20% Similarity=0.132 Sum_probs=28.0
Q ss_pred CcCHHHHHHHhCCChHHHHHHHHHHhhCcc
Q psy5744 45 CMKEDDICELLKFERKMLRARISTLKNDKI 74 (157)
Q Consensus 45 ~i~dedLa~~l~i~~k~vRkiL~~L~~d~L 74 (157)
.++-++||..+|+.+..|.++|.+|+++|+
T Consensus 178 ~~t~~~iA~~lg~sr~tvsR~l~~L~~~gi 207 (237)
T 3fx3_A 178 PYDKMLIAGRLGMKPESLSRAFSRLKAAGV 207 (237)
T ss_dssp CSCTHHHHHHTTCCHHHHHHHHHHHGGGTE
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCCe
Confidence 366899999999999999999999999996
No 323
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=82.73 E-value=0.69 Score=24.71 Aligned_cols=21 Identities=19% Similarity=0.523 Sum_probs=16.5
Q ss_pred CCCeeecCCCCCccchhhhhh
Q psy5744 126 SRSSFKCPRCLKTFTDLEPCL 146 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~~ 146 (157)
+...|.|+.|++.|+....+.
T Consensus 7 ~~k~~~C~~C~k~f~~~~~L~ 27 (41)
T 2ept_A 7 GQRVYECQECGKSFRQKGSLT 27 (41)
T ss_dssp CCCCEECSSSCCEESSHHHHH
T ss_pred CCCCeECCCCCCCcCCHHHHH
Confidence 345799999999998876653
No 324
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}
Probab=82.71 E-value=0.72 Score=25.34 Aligned_cols=31 Identities=16% Similarity=0.187 Sum_probs=21.9
Q ss_pred CCCeeecCCCCCccchhhhhhcc-----CCCCcccC
Q psy5744 126 SRSSFKCPRCLKTFTDLEPCLLV-----LWCACPCK 156 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~~L~-----d~~~F~C~ 156 (157)
+...|.|+.|++.|+....+..- +...|.|+
T Consensus 9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~ 44 (46)
T 2em0_A 9 GEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPS 44 (46)
T ss_dssp CCCCCCCSSSCCCCSSHHHHHHHGGGGSSSSCSCSS
T ss_pred CCcCeECCCCCcccCCHHHHHHHHHHcCCCCCcCCC
Confidence 44569999999999987765432 23367776
No 325
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2
Probab=82.69 E-value=0.44 Score=29.78 Aligned_cols=21 Identities=24% Similarity=0.652 Sum_probs=16.5
Q ss_pred CCCeeecCCCCCccchhhhhh
Q psy5744 126 SRSSFKCPRCLKTFTDLEPCL 146 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~~ 146 (157)
....|.||+|+.+|=.+.-..
T Consensus 23 ~~akY~CPrC~~rYCSl~C~k 43 (59)
T 1x4s_A 23 QPARYTCPRCNAPYCSLRCYR 43 (59)
T ss_dssp EEECEECTTTCCEESSHHHHH
T ss_pred CCccccCcCCCCCccChHHHH
Confidence 356899999999997776544
No 326
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=82.59 E-value=0.71 Score=25.28 Aligned_cols=31 Identities=16% Similarity=0.204 Sum_probs=22.0
Q ss_pred CCCeeecCCCCCccchhhhhhcc-----CCCCcccC
Q psy5744 126 SRSSFKCPRCLKTFTDLEPCLLV-----LWCACPCK 156 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~~L~-----d~~~F~C~ 156 (157)
+...|.|+.|++.|+....+..- +...|.|+
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~ 44 (46)
T 2eow_A 9 GEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPS 44 (46)
T ss_dssp CCCCEECTTSCCEESSHHHHHHHHHHHCCCSCSCTT
T ss_pred CCCCeeccccCChhcCHHHHHHHHHHcCCCCCCCCC
Confidence 44569999999999987765432 23367775
No 327
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=82.46 E-value=1 Score=25.73 Aligned_cols=19 Identities=16% Similarity=0.354 Sum_probs=13.7
Q ss_pred CCeeecCCCCCccchhhhh
Q psy5744 127 RSSFKCPRCLKTFTDLEPC 145 (157)
Q Consensus 127 ~~~Y~Cp~C~~~Ys~lda~ 145 (157)
...|.|+.|++.|+....+
T Consensus 30 ~~~~~C~~C~~~f~~~~~l 48 (57)
T 3uk3_C 30 EKPYKCEFCEYAAAQKTSL 48 (57)
T ss_dssp CCCEECSSSSCEESSHHHH
T ss_pred CCCcCCCCCcchhCCHHHH
Confidence 4458888888888766544
No 328
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A
Probab=82.44 E-value=1.2 Score=35.12 Aligned_cols=60 Identities=15% Similarity=0.289 Sum_probs=47.5
Q ss_pred hHHHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeeeEeeeecCCCceeEEEEEEecc
Q psy5744 33 DSLIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQTRLRMETGLDGKAQKVNYYFINY 99 (157)
Q Consensus 33 ~ivIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~~~~e~~~~gk~~~~~yw~I~y 99 (157)
|..|+.+.-..|.+|.++|+..+|++....+..|..|..+|++=.- +. ..| -..|||-+.
T Consensus 156 ~~~vLela~~~g~vt~~~L~~~l~W~~~Ra~~~L~~l~~~GllwvD---~q-~~g---e~~Yw~P~l 215 (234)
T 3cuq_A 156 HTVVLQLAEKNGYVTVSEIKASLKWETERARQVLEHLLKEGLAWLD---LQ-APG---EAHYWLPAL 215 (234)
T ss_dssp HHHHHHHHTTTSEECHHHHHHHHTCCHHHHHHHHHHHHHHTSCEEE---SS-SSS---SCEEECTTS
T ss_pred HHHHHHHHHhcCcCcHHHHHHHhCCCHHHHHHHHHHHHhCCCEEEe---CC-CCC---cceeecchh
Confidence 6677777666899999999999999999999999999999999854 11 122 236887653
No 329
>1bm9_A RTP, TER, replication terminator protein; DNA-binding protein, contrahelicase; 2.00A {Bacillus subtilis} SCOP: a.4.5.7 PDB: 1f4k_A 1j0r_A 2dpd_A 2dpu_A 2efw_A* 2dqr_A
Probab=82.42 E-value=11 Score=26.65 Aligned_cols=64 Identities=20% Similarity=0.194 Sum_probs=40.3
Q ss_pred hCCChHHHHHHHHHHhhCcceeeeEeeeecCCCceeEEEEEEecchhHH----HHHHHHHHHHHHHHHHH
Q psy5744 55 LKFERKMLRARISTLKNDKIIQTRLRMETGLDGKAQKVNYYFINYQTFV----NIVKYKLDVMRKRMEME 120 (157)
Q Consensus 55 l~i~~k~vRkiL~~L~~d~Lv~~~~~~e~~~~gk~~~~~yw~I~y~~~~----~vik~rl~~m~~~L~~~ 120 (157)
..++.-.|=.+|..|+++|+|+.+.+.+.++++ ..+.||.+.-..-- ...+.........|+.-
T Consensus 50 ~~is~gtlYp~L~rLe~~Gll~~~~~~~~g~~r--~~rkyY~lT~~G~~~~~~~~~~~~~~~~~~~i~~~ 117 (122)
T 1bm9_A 50 FKPNHTEVYRSLHELLDDGILKQIKVKKEGAKL--QEVVLYQFKDYEAAKLYKKQLKVELDRCKKLIEKA 117 (122)
T ss_dssp CCCCHHHHHHHHHHHHHTTSEEEEEEECTTSTT--CEEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCcccHHHHHHHHHHCCCeEEEEeecCCCCC--CceeEEEEChhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 356777899999999999999988554223332 36789998864333 23333344444444433
No 330
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=82.40 E-value=0.68 Score=25.29 Aligned_cols=21 Identities=19% Similarity=0.442 Sum_probs=16.4
Q ss_pred CCCeeecCCCCCccchhhhhh
Q psy5744 126 SRSSFKCPRCLKTFTDLEPCL 146 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~~ 146 (157)
....|.|+.|++.|+....+.
T Consensus 9 ~~k~~~C~~C~k~F~~~~~L~ 29 (44)
T 2epv_A 9 GEKPYECNECGKAFIWKSLLI 29 (44)
T ss_dssp CCCSEECSSSCCEESSHHHHH
T ss_pred CCcCeECCCCCcccCchHHHH
Confidence 345799999999998766543
No 331
>3eqx_A FIC domain containing transcriptional regulator; FIC family protein, structural genomics, joint center for ST genomics, JCSG; HET: MSE PGE; 1.60A {Shewanella oneidensis}
Probab=82.36 E-value=3.5 Score=34.21 Aligned_cols=45 Identities=9% Similarity=0.204 Sum_probs=41.7
Q ss_pred hHHHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceee
Q psy5744 33 DSLIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQT 77 (157)
Q Consensus 33 ~ivIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~ 77 (157)
...+++.|..++.++-.++++.+|++...+++.|..|.+.|++..
T Consensus 299 ~~~ll~~l~~~p~~t~~~~~~~~~~S~~TA~r~L~~L~e~GiL~~ 343 (373)
T 3eqx_A 299 SHELVQVIFEQPYCRIQNLVESGLAKRQTASVYLKQLCDIGVLEE 343 (373)
T ss_dssp CHHHHHHHHHCSEEEHHHHHHTSSSCHHHHHHHHHHHHHTTSCEE
T ss_pred HHHHHHHHHHCCCccHHHHHHHhCcCHHHHHHHHHHHHHCCcEEE
Confidence 456899999999999999999999999999999999999999974
No 332
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=82.26 E-value=0.66 Score=25.57 Aligned_cols=31 Identities=26% Similarity=0.354 Sum_probs=21.4
Q ss_pred CCCeeecCCCCCccchhhhhhcc-----C-CCCcccC
Q psy5744 126 SRSSFKCPRCLKTFTDLEPCLLV-----L-WCACPCK 156 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~~L~-----d-~~~F~C~ 156 (157)
+...|.|+.|++.|+....+.-- + ...|.|+
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~C~ 45 (46)
T 2eoy_A 9 KEKCFKCNKCEKTFSCSKYLTQHERIHTRGVKSGPSS 45 (46)
T ss_dssp CSCCEECSSSCCEESSSHHHHHHHTTCCSCCTTSSSC
T ss_pred CCCCEECcCCCCcCCCHHHHHHHHHHcCCCCCCCCCC
Confidence 34569999999999987665422 2 2357775
No 333
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=82.21 E-value=0.71 Score=25.37 Aligned_cols=31 Identities=19% Similarity=0.270 Sum_probs=21.9
Q ss_pred CCCeeecCCCCCccchhhhhhcc-----CCCCcccC
Q psy5744 126 SRSSFKCPRCLKTFTDLEPCLLV-----LWCACPCK 156 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~~L~-----d~~~F~C~ 156 (157)
+...|.|+.|++.|+....+.-- +...|.|+
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~ 44 (46)
T 2ep3_A 9 GEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPS 44 (46)
T ss_dssp CCCSEECSSSCCEESSHHHHHHHHTTTTTSCCCCTT
T ss_pred CCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCC
Confidence 44579999999999987765432 12357775
No 334
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=82.15 E-value=0.65 Score=25.25 Aligned_cols=21 Identities=29% Similarity=0.689 Sum_probs=16.6
Q ss_pred CCCeeecCCCCCccchhhhhh
Q psy5744 126 SRSSFKCPRCLKTFTDLEPCL 146 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~~ 146 (157)
+...|.|+.|++.|+....+.
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~ 29 (44)
T 2yu5_A 9 GENPFKCSKCDRVFTQRNYLV 29 (44)
T ss_dssp CCCSEECSSSSCEESSSHHHH
T ss_pred CCCCeECCCCCchhCCHHHHH
Confidence 345699999999999876654
No 335
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=81.97 E-value=0.73 Score=25.36 Aligned_cols=31 Identities=19% Similarity=0.206 Sum_probs=21.7
Q ss_pred CCCeeecCCCCCccchhhhhhcc-----CCCCcccC
Q psy5744 126 SRSSFKCPRCLKTFTDLEPCLLV-----LWCACPCK 156 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~~L~-----d~~~F~C~ 156 (157)
....|.|+.|++.|+....+.-- +...|.|+
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~ 44 (46)
T 2yto_A 9 GEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPS 44 (46)
T ss_dssp SCCCEECSSSCCEESSHHHHHHHHHHHTCCCBTTTB
T ss_pred CCCCEECcccCCccCCHhHHHHHHHHcCCCCCCCCC
Confidence 34579999999999987665432 23467775
No 336
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=81.97 E-value=0.7 Score=25.31 Aligned_cols=31 Identities=13% Similarity=0.078 Sum_probs=22.1
Q ss_pred CCCeeecCCCCCccchhhhhhcc-----CCCCcccC
Q psy5744 126 SRSSFKCPRCLKTFTDLEPCLLV-----LWCACPCK 156 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~~L~-----d~~~F~C~ 156 (157)
+...|.|+.|++.|+....+..- +...|.|+
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~p~~C~ 44 (46)
T 2yts_A 9 GEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPS 44 (46)
T ss_dssp SCCSEECSSSCCEESSHHHHHHHGGGTSSCCSSCCC
T ss_pred CCcCEECCCCChhhCChHHHHHHHHhcCCCCCcCCC
Confidence 44579999999999987765432 23367776
No 337
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A
Probab=81.94 E-value=0.7 Score=25.44 Aligned_cols=31 Identities=16% Similarity=0.157 Sum_probs=21.9
Q ss_pred CCCeeecCCCCCccchhhhhhcc-----CCCCcccC
Q psy5744 126 SRSSFKCPRCLKTFTDLEPCLLV-----LWCACPCK 156 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~~L~-----d~~~F~C~ 156 (157)
+...|.|+.|++.|+....+..- +...|.|+
T Consensus 9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~ 44 (46)
T 2emj_A 9 GEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPS 44 (46)
T ss_dssp CCCSEECSSSSCEESSHHHHHHHHHHHTTSCSSSSC
T ss_pred CCCCEECCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence 34569999999999987765432 23367775
No 338
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=81.75 E-value=0.78 Score=25.12 Aligned_cols=31 Identities=13% Similarity=0.149 Sum_probs=21.9
Q ss_pred CCCeeecCCCCCccchhhhhhcc-----CCCCcccC
Q psy5744 126 SRSSFKCPRCLKTFTDLEPCLLV-----LWCACPCK 156 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~~L~-----d~~~F~C~ 156 (157)
+...|.|+.|++.|+....+..- +...|.|+
T Consensus 9 ~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~ 44 (46)
T 2yrj_A 9 GEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPS 44 (46)
T ss_dssp CCCCEECSSSCCEESSHHHHHHHHTTTSSCCSSCSC
T ss_pred CCCCeECCCCCCccCCHHHHHHHHHHcCCCCCCCCC
Confidence 44579999999999987665422 23367776
No 339
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=81.71 E-value=0.74 Score=25.29 Aligned_cols=31 Identities=16% Similarity=0.096 Sum_probs=21.7
Q ss_pred CCCeeecCCCCCccchhhhhhcc-----CCCCcccC
Q psy5744 126 SRSSFKCPRCLKTFTDLEPCLLV-----LWCACPCK 156 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~~L~-----d~~~F~C~ 156 (157)
+...|.|+.|++.|+....+..- +...|.|+
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~ 44 (46)
T 2ene_A 9 GEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPS 44 (46)
T ss_dssp CSSSEECSSSCCEESSHHHHHHHHTTTCCCCCCSCC
T ss_pred CCCCeECCCCCchhCChHHHHHHHhhcCCCCCCCCC
Confidence 44579999999999987765432 12357775
No 340
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=81.70 E-value=0.74 Score=25.29 Aligned_cols=31 Identities=16% Similarity=0.170 Sum_probs=22.2
Q ss_pred CCCeeecCCCCCccchhhhhhcc-----CCCCcccC
Q psy5744 126 SRSSFKCPRCLKTFTDLEPCLLV-----LWCACPCK 156 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~~L~-----d~~~F~C~ 156 (157)
+...|.|+.|++.|+....+..- +...|.|+
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~ 44 (46)
T 2ytj_A 9 GEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPS 44 (46)
T ss_dssp SCCSEECSSSCCEESSHHHHHHHHHHTSCCCCSSCS
T ss_pred CCcCeECCCCChhhCCHHHHHHHHHHcCCCCCCCCC
Confidence 34569999999999987776432 23367776
No 341
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=81.69 E-value=0.74 Score=25.29 Aligned_cols=31 Identities=13% Similarity=0.201 Sum_probs=22.0
Q ss_pred CCCeeecCCCCCccchhhhhhcc-----CCCCcccC
Q psy5744 126 SRSSFKCPRCLKTFTDLEPCLLV-----LWCACPCK 156 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~~L~-----d~~~F~C~ 156 (157)
+...|.|+.|++.|+....+..- +...|.|+
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~ 44 (46)
T 2eml_A 9 GEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPS 44 (46)
T ss_dssp SCCSEECSSSCCEESSHHHHHHHHGGGSSCCCSCSS
T ss_pred CCCCeeCCCcCCccCCHHHHHHHHHHhcCCCCCCCC
Confidence 44579999999999987765432 23367776
No 342
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=81.69 E-value=0.79 Score=25.15 Aligned_cols=31 Identities=19% Similarity=0.188 Sum_probs=22.2
Q ss_pred CCCeeecCCCCCccchhhhhhcc-----CCCCcccC
Q psy5744 126 SRSSFKCPRCLKTFTDLEPCLLV-----LWCACPCK 156 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~~L~-----d~~~F~C~ 156 (157)
+...|.|+.|++.|+....+..- +...|.|+
T Consensus 9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~ 44 (46)
T 2emh_A 9 GERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPS 44 (46)
T ss_dssp CCCSEECTTTCCEESSHHHHHHHHHHHHCSSCSSSC
T ss_pred CCCCcCCCCCCchhCCHHHHHHHHHhcCCCCCCCCC
Confidence 44579999999999987766432 23467775
No 343
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=81.56 E-value=1.8 Score=33.11 Aligned_cols=28 Identities=11% Similarity=0.075 Sum_probs=20.0
Q ss_pred HHHHHHHHhhcCCCCeeecCCCCCccch
Q psy5744 114 RKRMEMEERDATSRSSFKCPRCLKTFTD 141 (157)
Q Consensus 114 ~~~L~~~~~~~~~~~~Y~Cp~C~~~Ys~ 141 (157)
-+++-++++...+...|+|+.||-.|..
T Consensus 156 ~~~ll~~l~~~~~~~~~~C~~CG~i~~g 183 (202)
T 1yuz_A 156 YLAAYNDIDAPDDDKFHLCPICGYIHKG 183 (202)
T ss_dssp HHHHHHTTTCCCSCCEEECSSSCCEEES
T ss_pred HHHHHHHHhcCCCCcEEEECCCCCEEcC
Confidence 3344445555566789999999999974
No 344
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=81.53 E-value=2.9 Score=25.46 Aligned_cols=35 Identities=20% Similarity=0.235 Sum_probs=26.7
Q ss_pred HHHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHh
Q psy5744 34 SLIIDMLVRNPCMKEDDICELLKFERKMLRARISTLK 70 (157)
Q Consensus 34 ivIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~ 70 (157)
..|+..+ ....+..+||+.+|++.+.|+..+..+.
T Consensus 17 ~~il~~~--~~g~s~~eIA~~l~is~~tV~~~~~~~~ 51 (74)
T 1fse_A 17 REVFELL--VQDKTTKEIASELFISEKTVRNHISNAM 51 (74)
T ss_dssp HHHHHHH--TTTCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHH--HcCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3445443 2346999999999999999998888755
No 345
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=81.47 E-value=0.76 Score=25.30 Aligned_cols=31 Identities=13% Similarity=0.177 Sum_probs=21.5
Q ss_pred CCCeeecCCCCCccchhhhhhcc-----CCCCcccC
Q psy5744 126 SRSSFKCPRCLKTFTDLEPCLLV-----LWCACPCK 156 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~~L~-----d~~~F~C~ 156 (157)
+...|.|+.|++.|+....+.-- +...|.|+
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~ 44 (46)
T 2em4_A 9 GQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPS 44 (46)
T ss_dssp CSSSEECSSSCCEESSHHHHHHHHHHHSSSSCCCCC
T ss_pred CCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCC
Confidence 34569999999999987665422 23357775
No 346
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=81.45 E-value=0.77 Score=25.13 Aligned_cols=31 Identities=13% Similarity=0.049 Sum_probs=21.6
Q ss_pred CCCeeecCCCCCccchhhhhhcc-----CCCCcccC
Q psy5744 126 SRSSFKCPRCLKTFTDLEPCLLV-----LWCACPCK 156 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~~L~-----d~~~F~C~ 156 (157)
+...|.|+.|++.|+....+..- +...|.|+
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~ 44 (46)
T 2eme_A 9 GEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPS 44 (46)
T ss_dssp CCCSEECSSSCCEESSHHHHHHHHGGGCCCSCCSSC
T ss_pred CCCCeECCCCChhhCCHHHHHHHHHhcCCCCCCCCC
Confidence 44579999999999987665422 12357775
No 347
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=81.37 E-value=2.9 Score=27.48 Aligned_cols=39 Identities=13% Similarity=0.348 Sum_probs=30.7
Q ss_pred CchHHHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhh
Q psy5744 31 IEDSLIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKN 71 (157)
Q Consensus 31 ~e~ivIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~ 71 (157)
+...-|+.++. ..++..+||..||++.+.|+..+..+.+
T Consensus 32 ~rE~~Vl~l~~--~G~s~~eIA~~L~iS~~TV~~~~~~i~~ 70 (90)
T 3ulq_B 32 PRECLILQEVE--KGFTNQEIADALHLSKRSIEYSLTSIFN 70 (90)
T ss_dssp HHHHHHHHHHH--TTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--cCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 33556666655 4689999999999999999998887653
No 348
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=81.31 E-value=0.79 Score=24.88 Aligned_cols=31 Identities=19% Similarity=0.234 Sum_probs=22.0
Q ss_pred CCCeeecCCCCCccchhhhhhcc-----CCCCcccC
Q psy5744 126 SRSSFKCPRCLKTFTDLEPCLLV-----LWCACPCK 156 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~~L~-----d~~~F~C~ 156 (157)
+...|.|+.|++.|+....+..- +...|.|+
T Consensus 7 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~ 42 (44)
T 2emx_A 7 GEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPS 42 (44)
T ss_dssp SCCCEECSSSSCEESSHHHHHHHHHHHTSSCSCSCC
T ss_pred CCcCccCCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence 44579999999999987766432 23467775
No 349
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=81.31 E-value=0.83 Score=25.12 Aligned_cols=31 Identities=13% Similarity=0.146 Sum_probs=22.0
Q ss_pred CCCeeecCCCCCccchhhhhhcc-----CCCCcccC
Q psy5744 126 SRSSFKCPRCLKTFTDLEPCLLV-----LWCACPCK 156 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~~L~-----d~~~F~C~ 156 (157)
+...|.|+.|++.|+....+..- +...|.|+
T Consensus 9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~ 44 (46)
T 2eoo_A 9 GERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPS 44 (46)
T ss_dssp CCCCEECSSSCCEESSHHHHHHHHHHHHSTTSSCCS
T ss_pred CCCCEEccccCcccCCHHHHHHHHHHHcCCCCCCCC
Confidence 44579999999999987765432 23457775
No 350
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=81.27 E-value=0.8 Score=25.13 Aligned_cols=31 Identities=16% Similarity=0.190 Sum_probs=22.5
Q ss_pred CCCeeecCCCCCccchhhhhhcc-----CCCCcccC
Q psy5744 126 SRSSFKCPRCLKTFTDLEPCLLV-----LWCACPCK 156 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~~L~-----d~~~F~C~ 156 (157)
+...|.|+.|++.|+....+..- +...|.|+
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~ 44 (46)
T 2ep2_A 9 GEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPS 44 (46)
T ss_dssp CCCSEECSSSCCEESSHHHHHHHHHTTSSCCSCCSC
T ss_pred CCcCcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence 45579999999999987766432 23367776
No 351
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1
Probab=81.24 E-value=1.2 Score=26.92 Aligned_cols=19 Identities=21% Similarity=0.744 Sum_probs=14.3
Q ss_pred CCeeecCCCCCccchhhhh
Q psy5744 127 RSSFKCPRCLKTFTDLEPC 145 (157)
Q Consensus 127 ~~~Y~Cp~C~~~Ys~lda~ 145 (157)
...|.|+.|++.|+....+
T Consensus 47 ~~~~~C~~C~~~f~~~~~l 65 (73)
T 1f2i_G 47 QKPFQCRICMRNFSRSDHL 65 (73)
T ss_dssp CCCEECTTTCCEESCHHHH
T ss_pred CCCeECCCCCchhCCHHHH
Confidence 4468999999998876554
No 352
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=81.24 E-value=0.79 Score=25.16 Aligned_cols=31 Identities=16% Similarity=0.114 Sum_probs=21.9
Q ss_pred CCCeeecCCCCCccchhhhhhcc-----CCCCcccC
Q psy5744 126 SRSSFKCPRCLKTFTDLEPCLLV-----LWCACPCK 156 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~~L~-----d~~~F~C~ 156 (157)
+...|.|+.|++.|+....+..- +...|.|+
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~ 44 (46)
T 2em7_A 9 GEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPS 44 (46)
T ss_dssp CCCSEECSSSCCEESCHHHHHHHGGGGTTCCCSSTT
T ss_pred CCcCccCCCccchhCCHHHHHHHHHHhCCCCCCCCC
Confidence 44579999999999987765432 22367775
No 353
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=81.21 E-value=1.5 Score=26.49 Aligned_cols=20 Identities=25% Similarity=0.561 Sum_probs=13.4
Q ss_pred CCCeeecCCCCCccchhhhh
Q psy5744 126 SRSSFKCPRCLKTFTDLEPC 145 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~ 145 (157)
....|.|+.|++.|.....+
T Consensus 39 ~~~~~~C~~C~~~f~~~~~L 58 (72)
T 1x6e_A 39 GEKPYKCLECGKAFSQNSGL 58 (72)
T ss_dssp CSCCEECSSSCCEESSHHHH
T ss_pred CCCCeECCCCCcccCCHHHH
Confidence 34568888888887765543
No 354
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=81.01 E-value=0.8 Score=25.18 Aligned_cols=31 Identities=19% Similarity=0.209 Sum_probs=21.8
Q ss_pred CCCeeecCCCCCccchhhhhhcc-----CCCCcccC
Q psy5744 126 SRSSFKCPRCLKTFTDLEPCLLV-----LWCACPCK 156 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~~L~-----d~~~F~C~ 156 (157)
+...|.|+.|++.|+....+..- +...|.|+
T Consensus 9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~ 44 (46)
T 2emf_A 9 GGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPS 44 (46)
T ss_dssp SSCCEECSSSCCEESCHHHHHHHGGGTSCSSCSCCC
T ss_pred CCCCeECCCCCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence 44579999999999987765432 12367775
No 355
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=80.91 E-value=0.9 Score=24.91 Aligned_cols=31 Identities=16% Similarity=0.117 Sum_probs=22.0
Q ss_pred CCCeeecCCCCCccchhhhhhcc-----CCCCcccC
Q psy5744 126 SRSSFKCPRCLKTFTDLEPCLLV-----LWCACPCK 156 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~~L~-----d~~~F~C~ 156 (157)
+...|.|+.|++.|+....+..- +...|.|+
T Consensus 9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~ 44 (46)
T 2eq0_A 9 GEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPS 44 (46)
T ss_dssp CCCCEECTTTCCEESSHHHHHHHHTTTCCCCCSCCS
T ss_pred CCCCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCC
Confidence 45579999999999987765432 12367775
No 356
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=80.87 E-value=0.71 Score=25.30 Aligned_cols=31 Identities=19% Similarity=0.168 Sum_probs=21.5
Q ss_pred CCCeeecCCCCCccchhhhhhcc-----CCCCcccC
Q psy5744 126 SRSSFKCPRCLKTFTDLEPCLLV-----LWCACPCK 156 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~~L~-----d~~~F~C~ 156 (157)
+...|.|+.|++.|+....+..- +...|.|+
T Consensus 9 ~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~ 44 (46)
T 2eov_A 9 GEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPS 44 (46)
T ss_dssp SCCSCBCSSSCCBCSSHHHHHHHHHHHSCCSSCCSC
T ss_pred CCCCccCCccChhhCCHHHHHHHHHhcCCCCCCCCC
Confidence 34569999999999987665422 23357775
No 357
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}
Probab=80.85 E-value=2.4 Score=34.61 Aligned_cols=59 Identities=10% Similarity=0.061 Sum_probs=46.2
Q ss_pred chHHHHHHHHHHHHHcCCCchH--------HHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceee
Q psy5744 13 VPTSLKQLSRLVVRGFYSIEDS--------LIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQT 77 (157)
Q Consensus 13 ip~~~~~Lv~~v~R~Fy~~e~i--------vIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~ 77 (157)
.++.++.+++.+. ++-.+ -++..| + +..+-++||..+|++..-++..|..|...|++..
T Consensus 21 ~~~~~~~~~~~~~----~~~~l~~~~~~~~~ll~~L-~-~~~t~~eLa~~~g~~~~~v~~~L~~l~~~gll~~ 87 (373)
T 2qm3_A 21 QSNAMKEIVERVK----TKTKIPVYERSVENVLSAV-L-ASDDIWRIVDLSEEPLPLVVAILESLNELGYVTF 87 (373)
T ss_dssp SCCHHHHHHHHHH----TTCSSCCCHHHHHHHHHHH-H-HCSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEC
T ss_pred hhhHHHHHHHHHH----HhcCccHhHHHHHHHHHHh-c-CCCCHHHHHHHhCCChHHHHHHHHHHhhCCcEEE
Confidence 3455666666665 33334 577777 4 5689999999999999999999999999999974
No 358
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=80.83 E-value=0.82 Score=25.08 Aligned_cols=31 Identities=16% Similarity=0.162 Sum_probs=21.9
Q ss_pred CCCeeecCCCCCccchhhhhhcc-----CCCCcccC
Q psy5744 126 SRSSFKCPRCLKTFTDLEPCLLV-----LWCACPCK 156 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~~L~-----d~~~F~C~ 156 (157)
+...|.|+.|++.|+....+.-- +...|.|+
T Consensus 9 ~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~ 44 (46)
T 2em3_A 9 GEKPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPS 44 (46)
T ss_dssp SCCSEECSSSCCEESSHHHHHHHHHHHCCCCCCCSC
T ss_pred CCcCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence 34569999999999987765432 23467776
No 359
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=80.73 E-value=0.79 Score=25.08 Aligned_cols=31 Identities=16% Similarity=0.116 Sum_probs=21.9
Q ss_pred CCCeeecCCCCCccchhhhhhcc-----CCCCcccC
Q psy5744 126 SRSSFKCPRCLKTFTDLEPCLLV-----LWCACPCK 156 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~~L~-----d~~~F~C~ 156 (157)
+...|.|+.|++.|+....+..- +...|.|+
T Consensus 9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~ 44 (46)
T 2epw_A 9 GEKPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPS 44 (46)
T ss_dssp CCCSEECSSSCCEESSSHHHHHHHHHCCSCCCSCCC
T ss_pred CCCCeeCCCCCCccCCHHHHHHHHHHhCCCCCCCCC
Confidence 34569999999999987765432 23367775
No 360
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Probab=80.73 E-value=0.85 Score=24.95 Aligned_cols=31 Identities=16% Similarity=0.115 Sum_probs=21.7
Q ss_pred CCCeeecCCCCCccchhhhhhcc-----CCCCcccC
Q psy5744 126 SRSSFKCPRCLKTFTDLEPCLLV-----LWCACPCK 156 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~~L~-----d~~~F~C~ 156 (157)
+...|.|+.|++.|+....+..- +...|.|+
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~ 44 (46)
T 2em9_A 9 GEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPS 44 (46)
T ss_dssp CCCSEECSSSCCEESSHHHHHHHGGGGTSCCCCSTT
T ss_pred CCcCeECCccccccCChHHHHHHHHHhCCCCCCCCC
Confidence 44579999999999987665422 12357775
No 361
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Probab=80.64 E-value=0.83 Score=24.99 Aligned_cols=31 Identities=16% Similarity=0.236 Sum_probs=22.2
Q ss_pred CCCeeecCCCCCccchhhhhhcc-----CCCCcccC
Q psy5744 126 SRSSFKCPRCLKTFTDLEPCLLV-----LWCACPCK 156 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~~L~-----d~~~F~C~ 156 (157)
+...|.|+.|++.|+....+..- +...|.|+
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~ 44 (46)
T 2el4_A 9 GVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPS 44 (46)
T ss_dssp CCCSEECSSSSCEESSHHHHHHHGGGSSSCCCSCCT
T ss_pred CCCceECCCCCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence 44569999999999987766432 23367776
No 362
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=80.58 E-value=0.78 Score=25.25 Aligned_cols=31 Identities=16% Similarity=0.138 Sum_probs=21.9
Q ss_pred CCCeeecCCCCCccchhhhhhcc-----CCCCcccC
Q psy5744 126 SRSSFKCPRCLKTFTDLEPCLLV-----LWCACPCK 156 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~~L~-----d~~~F~C~ 156 (157)
+...|.|+.|++.|+....+..- +...|.|+
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~ 44 (46)
T 2em6_A 9 GEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGPS 44 (46)
T ss_dssp CCCCCBCSSSCCBCSSHHHHHHHHTTTSSSCCCCTT
T ss_pred CCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence 45579999999999987765432 12367786
No 363
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=80.52 E-value=0.69 Score=25.14 Aligned_cols=21 Identities=29% Similarity=0.550 Sum_probs=16.9
Q ss_pred CCCeeecCCCCCccchhhhhh
Q psy5744 126 SRSSFKCPRCLKTFTDLEPCL 146 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~~ 146 (157)
+...|.|+.|++.|+....+.
T Consensus 9 ~~~~~~C~~C~k~F~~~~~L~ 29 (44)
T 2eox_A 9 DSKSYNCNECGKAFTRIFHLT 29 (44)
T ss_dssp CCCCEEETTTTEEESSSHHHH
T ss_pred CCCCeECcccCcccCCHHHHH
Confidence 445799999999999877654
No 364
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=80.46 E-value=0.85 Score=25.08 Aligned_cols=31 Identities=19% Similarity=0.044 Sum_probs=21.8
Q ss_pred CCCeeecCCCCCccchhhhhhcc-----CCCCcccC
Q psy5744 126 SRSSFKCPRCLKTFTDLEPCLLV-----LWCACPCK 156 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~~L~-----d~~~F~C~ 156 (157)
+...|.|+.|++.|+....+.-- +...|.|+
T Consensus 9 ~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~ 44 (46)
T 2em5_A 9 STKSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPS 44 (46)
T ss_dssp CSCSEECSSSCCEESSHHHHHHHHTTTSCSCCSSCC
T ss_pred CCCCeECCcCCCccCCHHHHHHHHHHhCCCCCCCCC
Confidence 44579999999999987765422 12357776
No 365
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=80.39 E-value=0.84 Score=25.05 Aligned_cols=31 Identities=19% Similarity=0.164 Sum_probs=22.1
Q ss_pred CCCeeecCCCCCccchhhhhhcc-----CCCCcccC
Q psy5744 126 SRSSFKCPRCLKTFTDLEPCLLV-----LWCACPCK 156 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~~L~-----d~~~F~C~ 156 (157)
+...|.|+.|++.|+....+..- +...|.|+
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~ 44 (46)
T 2yu8_A 9 GEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGPS 44 (46)
T ss_dssp CCSSEECSSSCCEESSSHHHHHHTHHHHSCCCSCSC
T ss_pred CCCCeECCcCCchhCCHHHHHHHHHhcCCCCCCCCC
Confidence 45679999999999987765432 23467775
No 366
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=80.32 E-value=0.85 Score=25.01 Aligned_cols=31 Identities=19% Similarity=0.151 Sum_probs=22.0
Q ss_pred CCCeeecCCCCCccchhhhhhcc-----CCCCcccC
Q psy5744 126 SRSSFKCPRCLKTFTDLEPCLLV-----LWCACPCK 156 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~~L~-----d~~~F~C~ 156 (157)
+...|.|+.|++.|+....+..- +...|.|+
T Consensus 9 ~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~ 44 (46)
T 2ytk_A 9 GEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPS 44 (46)
T ss_dssp SSCSEECSSSCCEESSHHHHHHHHHHHSSSSCSSCC
T ss_pred CCCCEeCCcCCCccCCHHHHHHHHHHHCCCCCCCCC
Confidence 44579999999999987765432 23467775
No 367
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=80.16 E-value=1.8 Score=25.91 Aligned_cols=20 Identities=20% Similarity=0.348 Sum_probs=13.1
Q ss_pred CCCeeecCCCCCccchhhhh
Q psy5744 126 SRSSFKCPRCLKTFTDLEPC 145 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~ 145 (157)
....|.|+.|++.|+....+
T Consensus 34 ~~~~~~C~~C~~~f~~~~~L 53 (70)
T 1x5w_A 34 TDRPFKCNYCSFDTKQPSNL 53 (70)
T ss_dssp CSCSEECSSSSCEESSHHHH
T ss_pred CCCCEeCCCCCCccCCHHHH
Confidence 34457788888777765544
No 368
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=80.15 E-value=0.67 Score=30.06 Aligned_cols=25 Identities=24% Similarity=0.558 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHhhcCCCCeeecCCCCCc
Q psy5744 109 KLDVMRKRMEMEERDATSRSSFKCPRCLKT 138 (157)
Q Consensus 109 rl~~m~~~L~~~~~~~~~~~~Y~Cp~C~~~ 138 (157)
.+.++.++||..... -|.||.||+.
T Consensus 11 slRK~vkkie~~q~~-----ky~C~fCgk~ 35 (72)
T 3jyw_9 11 SLRRQVKKLEIQQHA-----RYDCSFCGKK 35 (72)
T ss_dssp HHHTTTHHHHHHHHS-----CBCCSSCCSS
T ss_pred hHHHHHHHHHHHhcc-----CccCCCCCCc
Confidence 355666677766544 6899999976
No 369
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=80.15 E-value=0.82 Score=25.02 Aligned_cols=31 Identities=13% Similarity=0.138 Sum_probs=22.1
Q ss_pred CCCeeecCCCCCccchhhhhhcc-----CCCCcccC
Q psy5744 126 SRSSFKCPRCLKTFTDLEPCLLV-----LWCACPCK 156 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~~L~-----d~~~F~C~ 156 (157)
+...|.|+.|++.|+....+..- +...|.|+
T Consensus 9 ~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~ 44 (46)
T 2eop_A 9 GEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPS 44 (46)
T ss_dssp CCCSCBCTTTCCBCSSHHHHHHHHTTTTTSCCSCCC
T ss_pred CCCCeeCCCCCchhCCHHHHHHHHHHcCCCCCCCCC
Confidence 44579999999999987766432 12367776
No 370
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=80.07 E-value=0.78 Score=25.25 Aligned_cols=31 Identities=19% Similarity=0.159 Sum_probs=21.7
Q ss_pred CCCeeecCCCCCccchhhhhhcc-----CCCCcccC
Q psy5744 126 SRSSFKCPRCLKTFTDLEPCLLV-----LWCACPCK 156 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~~L~-----d~~~F~C~ 156 (157)
+...|.|+.|++.|+....+.-- +...|.|+
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~ 44 (46)
T 2yth_A 9 GEKPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGPS 44 (46)
T ss_dssp CSSSBCCSSSCCCBSSHHHHHHHGGGGTTCCCSSCC
T ss_pred CCcCCCCCCCCcccCCHHHHHHHHHhcCCCCCCCCC
Confidence 34569999999999987665422 23367775
No 371
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=79.95 E-value=0.94 Score=24.75 Aligned_cols=31 Identities=16% Similarity=0.142 Sum_probs=21.8
Q ss_pred CCCeeecCCCCCccchhhhhhcc-----CCCCcccC
Q psy5744 126 SRSSFKCPRCLKTFTDLEPCLLV-----LWCACPCK 156 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~~L~-----d~~~F~C~ 156 (157)
+...|.|+.|++.|+....+.-- +...|.|+
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~ 44 (46)
T 2emm_A 9 GERPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGPS 44 (46)
T ss_dssp CCCSEECSSSCCEESSHHHHHHHHHHHSCCCTTSSS
T ss_pred CCCCeeCCCCChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence 44579999999999987765422 23367775
No 372
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=79.94 E-value=0.99 Score=24.66 Aligned_cols=31 Identities=16% Similarity=0.149 Sum_probs=21.6
Q ss_pred CCCeeecCCCCCccchhhhhhcc-----CCCCcccC
Q psy5744 126 SRSSFKCPRCLKTFTDLEPCLLV-----LWCACPCK 156 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~~L~-----d~~~F~C~ 156 (157)
+...|.|+.|++.|+....+..- +...|.|+
T Consensus 9 ~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~ 44 (46)
T 2en8_A 9 GEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPS 44 (46)
T ss_dssp CCSSEECTTTCCEESSHHHHHHHHTTTCCSCSSCCS
T ss_pred CCCCeECCCcCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence 44569999999999987665322 12367776
No 373
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=79.85 E-value=1.6 Score=30.12 Aligned_cols=25 Identities=28% Similarity=0.634 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHhhcCCCCeeecCCCCCc
Q psy5744 109 KLDVMRKRMEMEERDATSRSSFKCPRCLKT 138 (157)
Q Consensus 109 rl~~m~~~L~~~~~~~~~~~~Y~Cp~C~~~ 138 (157)
.+.++.++|+..... -|.||.||+.
T Consensus 21 slRK~vkkIE~~q~a-----ky~CpfCgk~ 45 (103)
T 4a17_Y 21 SLRKVVKKFEITQHA-----KYGCPFCGKV 45 (103)
T ss_dssp HHHHHHHHHHHHHHS-----CEECTTTCCE
T ss_pred hHHHHHHHHHHHhhc-----CCCCCCCCCc
Confidence 356666777766544 7999999876
No 374
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=79.80 E-value=0.94 Score=24.82 Aligned_cols=31 Identities=13% Similarity=0.098 Sum_probs=22.0
Q ss_pred CCCeeecCCCCCccchhhhhhcc-----CCCCcccC
Q psy5744 126 SRSSFKCPRCLKTFTDLEPCLLV-----LWCACPCK 156 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~~L~-----d~~~F~C~ 156 (157)
+...|.|+.|++.|+....+..- +...|.|+
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~ 44 (46)
T 2emp_A 9 GVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPS 44 (46)
T ss_dssp CCCSEECSSSCCEESCHHHHHHHHHHHHCCSCCSCC
T ss_pred CCcCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCC
Confidence 44579999999999987765432 23467775
No 375
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=79.73 E-value=0.79 Score=25.21 Aligned_cols=31 Identities=13% Similarity=0.161 Sum_probs=21.7
Q ss_pred CCCeeecCCCCCccchhhhhhcc-----CCCCcccC
Q psy5744 126 SRSSFKCPRCLKTFTDLEPCLLV-----LWCACPCK 156 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~~L~-----d~~~F~C~ 156 (157)
+...|.|+.|++.|+....+..- +...|.|+
T Consensus 9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~ 44 (46)
T 2enh_A 9 GEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPS 44 (46)
T ss_dssp CSSSCBCTTTCCBCSSSHHHHHHGGGSCCSCCCCCC
T ss_pred CCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence 34579999999999987665422 12367776
No 376
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=79.66 E-value=1.1 Score=24.59 Aligned_cols=31 Identities=13% Similarity=0.095 Sum_probs=21.5
Q ss_pred CCCeeecCCCCCccchhhhhhcc-----CCCCcccC
Q psy5744 126 SRSSFKCPRCLKTFTDLEPCLLV-----LWCACPCK 156 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~~L~-----d~~~F~C~ 156 (157)
+...|.|+.|++.|+....+..- +...|.|+
T Consensus 9 ~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~ 44 (46)
T 2yso_A 9 REKSHQCRECGEIFFQYVSLIEHQVLHMGQKNSGPS 44 (46)
T ss_dssp CCCCEECTTTCCEESSHHHHHHHHHHHSCCSCCCTT
T ss_pred CCCCEEccccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence 34569999999999987665322 23357775
No 377
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=79.63 E-value=0.97 Score=24.77 Aligned_cols=31 Identities=23% Similarity=0.280 Sum_probs=21.7
Q ss_pred CCCeeecCCCCCccchhhhhhcc-----CCCCcccC
Q psy5744 126 SRSSFKCPRCLKTFTDLEPCLLV-----LWCACPCK 156 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~~L~-----d~~~F~C~ 156 (157)
+...|.|+.|++.|+....+..- +...|.|+
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~ 44 (46)
T 2enc_A 9 GEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS 44 (46)
T ss_dssp CCCSEECSSSCCEESSHHHHHHHHHHSCCSSCCSSC
T ss_pred CCCCcCCCCCCCcCCChHHHHHHHHHhCCCCCCCCC
Confidence 34569999999999987765432 12357775
No 378
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}
Probab=79.44 E-value=1 Score=25.35 Aligned_cols=19 Identities=16% Similarity=0.440 Sum_probs=15.1
Q ss_pred CCeeecCCCCCccchhhhh
Q psy5744 127 RSSFKCPRCLKTFTDLEPC 145 (157)
Q Consensus 127 ~~~Y~Cp~C~~~Ys~lda~ 145 (157)
..-|.|+.|++.|+....+
T Consensus 5 ~kp~~C~~C~k~F~~~~~L 23 (48)
T 3iuf_A 5 DKPYACDICGKRYKNRPGL 23 (48)
T ss_dssp TSCEECTTTCCEESSHHHH
T ss_pred CcCEECCCcCcccCCHHHH
Confidence 4569999999999876544
No 379
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=79.40 E-value=0.87 Score=25.04 Aligned_cols=31 Identities=13% Similarity=0.082 Sum_probs=21.8
Q ss_pred CCCeeecCCCCCccchhhhhhcc-----CCCCcccC
Q psy5744 126 SRSSFKCPRCLKTFTDLEPCLLV-----LWCACPCK 156 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~~L~-----d~~~F~C~ 156 (157)
+...|.|+.|++.|+....+..- +...|.|+
T Consensus 9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~ 44 (46)
T 2elz_A 9 VEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPS 44 (46)
T ss_dssp CCSSCBCSSSCCBCSSHHHHHHHGGGGGSCCCCCSC
T ss_pred CCCCeeCcccCchhCCHHHHHHHHHhcCCCCCCCCC
Confidence 44579999999999987765422 23357775
No 380
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=79.37 E-value=0.97 Score=24.83 Aligned_cols=31 Identities=13% Similarity=0.060 Sum_probs=21.6
Q ss_pred CCCeeecCCCCCccchhhhhhcc-----CCCCcccC
Q psy5744 126 SRSSFKCPRCLKTFTDLEPCLLV-----LWCACPCK 156 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~~L~-----d~~~F~C~ 156 (157)
+...|.|+.|++.|+....+..- +...|.|+
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~ 44 (46)
T 2em8_A 9 GEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPS 44 (46)
T ss_dssp SCCSEECSSSCCEESSHHHHHHHHHHHHCCCCCCSC
T ss_pred CCCCeECcccCchhCCHHHHHHHHHHHcCCCCCCCC
Confidence 44579999999999987665432 23357775
No 381
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=79.34 E-value=1.4 Score=29.89 Aligned_cols=25 Identities=28% Similarity=0.466 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHhhcCCCCeeecCCCCCc
Q psy5744 109 KLDVMRKRMEMEERDATSRSSFKCPRCLKT 138 (157)
Q Consensus 109 rl~~m~~~L~~~~~~~~~~~~Y~Cp~C~~~ 138 (157)
.+.++.++|+..... -|.||.||+.
T Consensus 21 slRK~vkkie~~q~~-----ky~CpfCgk~ 45 (92)
T 3iz5_m 21 SLRKQIKKMEVSQHS-----KYFCEFCGKF 45 (92)
T ss_dssp HHHHHHHHHHHHHHS-----CBCCTTTCSS
T ss_pred HHHHHHHHHHHHHhc-----cccCcccCCC
Confidence 355666677766544 6889999876
No 382
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=79.23 E-value=1 Score=24.70 Aligned_cols=31 Identities=13% Similarity=0.161 Sum_probs=21.8
Q ss_pred CCCeeecCCCCCccchhhhhhcc-----CCCCcccC
Q psy5744 126 SRSSFKCPRCLKTFTDLEPCLLV-----LWCACPCK 156 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~~L~-----d~~~F~C~ 156 (157)
+...|.|+.|++.|+....+..- +...|.|+
T Consensus 9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~ 44 (46)
T 2emy_A 9 GENPYECHECGKAFSRKYQLISHQRTHAGEKPSGPS 44 (46)
T ss_dssp SSCCEECSSSCCEESSHHHHHHHHHHHTTSCCSCSS
T ss_pred CCcCcCCCCCCcccCcHHHHHHHHHHcCCCCCCCCC
Confidence 34579999999999987665432 23467775
No 383
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A
Probab=79.09 E-value=0.84 Score=25.09 Aligned_cols=31 Identities=19% Similarity=0.184 Sum_probs=21.6
Q ss_pred CCCeeecCCCCCccchhhhhhcc-----CCCCcccC
Q psy5744 126 SRSSFKCPRCLKTFTDLEPCLLV-----LWCACPCK 156 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~~L~-----d~~~F~C~ 156 (157)
+...|.|+.|++.|+....+.-- +...|.|+
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~ 44 (46)
T 2ely_A 9 GEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPS 44 (46)
T ss_dssp CCCSBCCSSSCCCBSSTTHHHHHHHHHSCCSSCSCC
T ss_pred CCCCcccCccCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence 44569999999999987665422 23467775
No 384
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=79.02 E-value=0.83 Score=25.13 Aligned_cols=31 Identities=19% Similarity=0.132 Sum_probs=21.8
Q ss_pred CCCeeecCCCCCccchhhhhhcc-----CCCCcccC
Q psy5744 126 SRSSFKCPRCLKTFTDLEPCLLV-----LWCACPCK 156 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~~L~-----d~~~F~C~ 156 (157)
+...|.|+.|++.|+....+..- +...|.|+
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~ 44 (46)
T 2emz_A 9 GERPFKCNECGKGFGRRSHLAGHLRLHSREKSSGPS 44 (46)
T ss_dssp CCCSCCCSSSCCCCSSHHHHHHHHHHHHHTTCCCSC
T ss_pred CCCCeECCCCCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence 34569999999999987765432 23457775
No 385
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=79.00 E-value=0.94 Score=24.83 Aligned_cols=31 Identities=19% Similarity=0.126 Sum_probs=21.8
Q ss_pred CCCeeecCCCCCccchhhhhhcc-----CCCCcccC
Q psy5744 126 SRSSFKCPRCLKTFTDLEPCLLV-----LWCACPCK 156 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~~L~-----d~~~F~C~ 156 (157)
+...|.|+.|++.|+....+..- +...|.|+
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~ 44 (46)
T 2epz_A 9 GEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPS 44 (46)
T ss_dssp CCCSBCCTTTCCCBSSHHHHHHHHTTTTTCCCCSSC
T ss_pred CCCCeECCCCCceeCCHHHHHHHHHHhCCCCCCCCC
Confidence 34569999999999987765432 12367776
No 386
>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*
Probab=78.95 E-value=1 Score=25.81 Aligned_cols=20 Identities=20% Similarity=0.441 Sum_probs=15.5
Q ss_pred CCCeeecCCCCCccchhhhh
Q psy5744 126 SRSSFKCPRCLKTFTDLEPC 145 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~ 145 (157)
+...|.|+.|++.|+....+
T Consensus 21 ~~k~~~C~~C~k~f~~~~~L 40 (54)
T 1yui_A 21 SEQPATCPICYAVIRQSRNL 40 (54)
T ss_dssp SSCCEECTTTCCEESSHHHH
T ss_pred CCCCccCCCCCcccCCHHHH
Confidence 34579999999999875543
No 387
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=78.94 E-value=0.76 Score=25.24 Aligned_cols=31 Identities=13% Similarity=0.147 Sum_probs=21.9
Q ss_pred CCCeeecCCCCCccchhhhhhcc-----CCCCcccC
Q psy5744 126 SRSSFKCPRCLKTFTDLEPCLLV-----LWCACPCK 156 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~~L~-----d~~~F~C~ 156 (157)
+...|.|+.|++.|+....+..- +...|.|+
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~ 44 (46)
T 2eq2_A 9 GGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPS 44 (46)
T ss_dssp SSCSSSCCSSCCCCSSHHHHHHHGGGGCCCCCCCCC
T ss_pred CCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence 44569999999999987665422 23467786
No 388
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=78.90 E-value=1.9 Score=28.43 Aligned_cols=61 Identities=11% Similarity=0.177 Sum_probs=29.5
Q ss_pred CcccccchHHHHHHHHHHHHHcCCCchHHHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHh
Q psy5744 7 GYVHTEVPTSLKQLSRLVVRGFYSIEDSLIIDMLVRNPCMKEDDICELLKFERKMLRARISTLK 70 (157)
Q Consensus 7 ~~~~~~ip~~~~~Lv~~v~R~Fy~~e~ivIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~ 70 (157)
|...++.+......+......+ .+...-|+.++ ...++-.+||+.||++.+.|+..+....
T Consensus 7 ~~~~~~~~~~~~~~l~~~l~~L-t~~e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~~l~r~~ 67 (95)
T 3c57_A 7 HHHHSSGLVPRGSHMQDPLSGL-TDQERTLLGLL--SEGLTNKQIADRMFLAEKTVKNYVSRLL 67 (95)
T ss_dssp --------------------CC-CHHHHHHHHHH--HTTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCCCccHHHHHHHHHHHhcC-CHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3344444444444444444333 34445555554 3458999999999999998888777554
No 389
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=78.87 E-value=0.77 Score=28.31 Aligned_cols=19 Identities=16% Similarity=0.672 Sum_probs=15.3
Q ss_pred CCeeecCCCCCccchhhhh
Q psy5744 127 RSSFKCPRCLKTFTDLEPC 145 (157)
Q Consensus 127 ~~~Y~Cp~C~~~Ys~lda~ 145 (157)
...|.||+|+.+|=.+.=.
T Consensus 21 ~~kY~CPrC~~~yCSl~C~ 39 (56)
T 2yqq_A 21 KPKYRCPACRVPYCSVVCF 39 (56)
T ss_dssp CCSEECTTTCCEESSHHHH
T ss_pred CCeeeCCCCCCCeeCHHHH
Confidence 5689999999999776543
No 390
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=78.81 E-value=0.88 Score=24.88 Aligned_cols=31 Identities=16% Similarity=0.151 Sum_probs=21.8
Q ss_pred CCCeeecCCCCCccchhhhhhcc-----CCCCcccC
Q psy5744 126 SRSSFKCPRCLKTFTDLEPCLLV-----LWCACPCK 156 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~~L~-----d~~~F~C~ 156 (157)
+...|.|+.|++.|+....+..- +...|.|+
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~ 44 (46)
T 2eq4_A 9 GEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPS 44 (46)
T ss_dssp CCCCCCBTTTTBCCSCHHHHHHHHHHCCSSSCCCCC
T ss_pred CCCCeECCCCCCccCchHHHHHHHHhcCCCCCCCCC
Confidence 44579999999999987765422 23367775
No 391
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=78.76 E-value=0.8 Score=25.07 Aligned_cols=31 Identities=13% Similarity=0.190 Sum_probs=21.6
Q ss_pred CCCeeecCCCCCccchhhhhhcc-----CCCCcccC
Q psy5744 126 SRSSFKCPRCLKTFTDLEPCLLV-----LWCACPCK 156 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~~L~-----d~~~F~C~ 156 (157)
+...|.|+.|++.|+....+..- +...|.|+
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~ 44 (46)
T 2ep1_A 9 GEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGPS 44 (46)
T ss_dssp SCCSSCCSSSCCCCSSHHHHHHHHGGGSSSCCCSSS
T ss_pred CCCCcCCCCCCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence 34569999999999887665422 23367776
No 392
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=78.71 E-value=1.9 Score=28.11 Aligned_cols=20 Identities=25% Similarity=0.441 Sum_probs=12.3
Q ss_pred CCCeeecCCCCCccchhhhh
Q psy5744 126 SRSSFKCPRCLKTFTDLEPC 145 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~ 145 (157)
+...|.|+.|+++|+....+
T Consensus 53 ~~k~~~C~~C~k~F~~~~~L 72 (85)
T 2lv2_A 53 AAQVFPCKYCPATFYSSPGL 72 (85)
T ss_dssp CSSSEECTTSSCEESSHHHH
T ss_pred CCCccCCCCCCCEeCCHHHH
Confidence 34457777777777665543
No 393
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=78.70 E-value=0.93 Score=24.85 Aligned_cols=21 Identities=19% Similarity=0.572 Sum_probs=16.9
Q ss_pred CCCeeecCCCCCccchhhhhh
Q psy5744 126 SRSSFKCPRCLKTFTDLEPCL 146 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~~ 146 (157)
+...|.|+.|++.|+....+.
T Consensus 9 ~~k~~~C~~C~k~F~~~~~L~ 29 (47)
T 2epx_A 9 GKKPYECIECGKAFIQNTSLI 29 (47)
T ss_dssp CCCSBCCSSSCCCBSSHHHHH
T ss_pred CCCCEECCccCchhCChHHHH
Confidence 345699999999999877654
No 394
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Probab=78.50 E-value=1.1 Score=26.51 Aligned_cols=20 Identities=30% Similarity=0.717 Sum_probs=16.0
Q ss_pred CCCeeecCCCCCccchhhhh
Q psy5744 126 SRSSFKCPRCLKTFTDLEPC 145 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~ 145 (157)
+...|.|+.|++.|+....+
T Consensus 37 ~~~~~~C~~C~k~f~~~~~L 56 (66)
T 2drp_A 37 NVKVYPCPFCFKEFTRKDNM 56 (66)
T ss_dssp SCCCEECTTTCCEESCHHHH
T ss_pred CCcCeECCCCCCccCCHHHH
Confidence 55679999999999876654
No 395
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=78.38 E-value=1.1 Score=24.56 Aligned_cols=31 Identities=19% Similarity=0.132 Sum_probs=21.7
Q ss_pred CCCeeecCCCCCccchhhhhhcc-----CCCCcccC
Q psy5744 126 SRSSFKCPRCLKTFTDLEPCLLV-----LWCACPCK 156 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~~L~-----d~~~F~C~ 156 (157)
+...|.|+.|++.|+....+..- +...|.|+
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~ 44 (46)
T 2em2_A 9 GEKPFKCKECGKAFRQNIHLASHLRIHTGEKPSGPS 44 (46)
T ss_dssp CCCSEECSSSCCEESSHHHHHHHHHHHCCCCSSCSS
T ss_pred CCCCEECCcCCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence 44569999999999987665422 23467776
No 396
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=78.33 E-value=2.6 Score=23.49 Aligned_cols=27 Identities=4% Similarity=0.070 Sum_probs=22.5
Q ss_pred HhCCCcCHHHHHHHhCCChHHHHHHHHH
Q psy5744 41 VRNPCMKEDDICELLKFERKMLRARIST 68 (157)
Q Consensus 41 ~~~~~i~dedLa~~l~i~~k~vRkiL~~ 68 (157)
...+ ++-.+||+.+|++...|.+.+..
T Consensus 18 ~~~g-~s~~~ia~~lgvs~~Tv~r~l~~ 44 (52)
T 1jko_C 18 LEKG-HPRQQLAIIFGIGVSTLYRYFPA 44 (52)
T ss_dssp HHTT-CCHHHHHHTTSCCHHHHHHHSCT
T ss_pred HHcC-CCHHHHHHHHCCCHHHHHHHHHH
Confidence 4455 89999999999999999988754
No 397
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=78.28 E-value=1.5 Score=29.64 Aligned_cols=25 Identities=24% Similarity=0.558 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHhhcCCCCeeecCCCCCc
Q psy5744 109 KLDVMRKRMEMEERDATSRSSFKCPRCLKT 138 (157)
Q Consensus 109 rl~~m~~~L~~~~~~~~~~~~Y~Cp~C~~~ 138 (157)
.+.++.++++..... -|.||.||+.
T Consensus 21 slRK~vkkie~~q~~-----ky~CpfCgk~ 45 (92)
T 3izc_m 21 SLRRQVKKLEIQQHA-----RYDCSFCGKK 45 (92)
T ss_dssp HHHHHHHHHHHHHHS-----CCCCSSSCSS
T ss_pred hHHHHHHHHHHHHhc-----CCcCCCCCCc
Confidence 355666677766544 6889999865
No 398
>1dxg_A Desulforedoxin; non-heme iron protein, rubredoxin type metal center, electron transport; 1.80A {Desulfovibrio gigas} SCOP: g.41.5.2 PDB: 1dcd_A 1dhg_A 1cfw_A 2lk5_A 2lk6_A
Probab=78.27 E-value=1.1 Score=24.82 Aligned_cols=16 Identities=19% Similarity=0.453 Sum_probs=12.7
Q ss_pred CCCeeecCCCCCccch
Q psy5744 126 SRSSFKCPRCLKTFTD 141 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~ 141 (157)
...+|+|+.||.--..
T Consensus 3 ~~~fY~C~~CGnivev 18 (36)
T 1dxg_A 3 EGDVYKCELCGQVVKV 18 (36)
T ss_dssp TTCEEECTTTCCEEEE
T ss_pred cccEEEcCCCCcEEEE
Confidence 4679999999986554
No 399
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}
Probab=78.23 E-value=1.1 Score=24.58 Aligned_cols=31 Identities=19% Similarity=0.285 Sum_probs=21.7
Q ss_pred CCCeeecCCCCCccchhhhhhcc-----CCCCcccC
Q psy5744 126 SRSSFKCPRCLKTFTDLEPCLLV-----LWCACPCK 156 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~~L~-----d~~~F~C~ 156 (157)
+...|.|+.|++.|+....+..- +...|.|+
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~ 44 (46)
T 2el6_A 9 GVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPS 44 (46)
T ss_dssp CCCSEECSSSSCEESSHHHHHHHHGGGCCSSCCSCC
T ss_pred CCCCeECCCCCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence 34569999999999987765432 12367775
No 400
>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=78.20 E-value=0.99 Score=24.52 Aligned_cols=31 Identities=16% Similarity=0.208 Sum_probs=21.6
Q ss_pred CCCeeecCCCCCccchhhhhhcc-----CCCCcccC
Q psy5744 126 SRSSFKCPRCLKTFTDLEPCLLV-----LWCACPCK 156 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~~L~-----d~~~F~C~ 156 (157)
+...|.|+.|++.|+....+..- +...|.|+
T Consensus 7 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~ 42 (43)
T 2yrm_A 7 GNGAFFCNECDCRFSEEASLKRHTLQTHSDKSGPSS 42 (43)
T ss_dssp SSCCBCCSSSCCCBSSHHHHHHHHHHHTCTTCSSSC
T ss_pred CCCCEECCCCCCeeCChHHHHHHHHhhCCCCCccCC
Confidence 34569999999999987665422 23467776
No 401
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=78.18 E-value=1.1 Score=24.49 Aligned_cols=31 Identities=16% Similarity=0.155 Sum_probs=22.0
Q ss_pred CCCeeecCCCCCccchhhhhhcc-----CCCCcccC
Q psy5744 126 SRSSFKCPRCLKTFTDLEPCLLV-----LWCACPCK 156 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~~L~-----d~~~F~C~ 156 (157)
+...|.|+.|++.|+....+..- +...|.|+
T Consensus 9 ~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~ 44 (46)
T 2ep0_A 9 GEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPS 44 (46)
T ss_dssp TCCSEECSSSCCEESSHHHHHHHHTTTSSSCCCSCC
T ss_pred CCCCeeCcccCcccCChHHHHHHHHHhCCCCCCCCC
Confidence 34569999999999987766432 12357775
No 402
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=78.01 E-value=2.1 Score=25.97 Aligned_cols=18 Identities=17% Similarity=0.512 Sum_probs=11.8
Q ss_pred CCeeecCCCCCccchhhh
Q psy5744 127 RSSFKCPRCLKTFTDLEP 144 (157)
Q Consensus 127 ~~~Y~Cp~C~~~Ys~lda 144 (157)
...|.|+.|++.|+....
T Consensus 43 ~~~~~C~~C~k~f~~~~~ 60 (74)
T 2lce_A 43 EKPYRCNICGAQFNRPAN 60 (74)
T ss_dssp CCSEECTTTCCEESCHHH
T ss_pred CCCEECCCCCchhCCHHH
Confidence 345777777777765544
No 403
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=77.86 E-value=1.1 Score=24.48 Aligned_cols=31 Identities=13% Similarity=0.192 Sum_probs=20.6
Q ss_pred CCCeeecCCCCCccchhhhhhcc-----CCCCcccC
Q psy5744 126 SRSSFKCPRCLKTFTDLEPCLLV-----LWCACPCK 156 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~~L~-----d~~~F~C~ 156 (157)
+...|.|+.|++.|+.-..+..- ....|.|+
T Consensus 7 ~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~ 42 (45)
T 2epq_A 7 GEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGP 42 (45)
T ss_dssp SCCSSEETTTTEECSCHHHHHHHHHHHSCCCCCCCC
T ss_pred CCCCCcCCCCCcccCCHHHHHHHHHHccCCCCCCCc
Confidence 34569999999999876654322 23467775
No 404
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=77.73 E-value=0.97 Score=24.77 Aligned_cols=31 Identities=23% Similarity=0.187 Sum_probs=22.0
Q ss_pred CCCeeecCCCCCccchhhhhhcc-----CCCCcccC
Q psy5744 126 SRSSFKCPRCLKTFTDLEPCLLV-----LWCACPCK 156 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~~L~-----d~~~F~C~ 156 (157)
+...|.|+.|++.|+....+.-- +...|.|+
T Consensus 9 ~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~ 44 (46)
T 2en1_A 9 GEKPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPS 44 (46)
T ss_dssp CCCSEEETTTTEEESSHHHHHHHGGGGSCCCCSCCC
T ss_pred CCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence 44569999999999987765422 23467776
No 405
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=77.71 E-value=1.7 Score=24.90 Aligned_cols=16 Identities=19% Similarity=0.276 Sum_probs=11.9
Q ss_pred CCCeeecCCCCCccch
Q psy5744 126 SRSSFKCPRCLKTFTD 141 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~ 141 (157)
....|.|+.|++.|+.
T Consensus 38 ~~k~~~C~~C~k~F~~ 53 (54)
T 2eps_A 38 SERPHKCQVWVSGPSS 53 (54)
T ss_dssp CCCCCCSSSSCCSSCC
T ss_pred CCCCccCCCCCCCCCC
Confidence 4456888888888864
No 406
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=77.65 E-value=0.91 Score=24.89 Aligned_cols=31 Identities=19% Similarity=0.155 Sum_probs=21.9
Q ss_pred CCCeeecCCCCCccchhhhhhcc-----CCCCcccC
Q psy5744 126 SRSSFKCPRCLKTFTDLEPCLLV-----LWCACPCK 156 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~~L~-----d~~~F~C~ 156 (157)
+...|.|+.|++.|+....+.-- +...|.|+
T Consensus 9 ~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~ 44 (46)
T 2eoq_A 9 GEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPS 44 (46)
T ss_dssp SSCSCCCSSSCCCCSSHHHHHHHHHHTTCCCSSSCC
T ss_pred CCCCcCCCcCCchhCCHHHHHHHHHHcCCCCCCCCC
Confidence 34569999999999987765432 23467776
No 407
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=77.63 E-value=0.84 Score=24.98 Aligned_cols=31 Identities=19% Similarity=0.171 Sum_probs=22.1
Q ss_pred CCCeeecCCCCCccchhhhhhcc-----CCCCcccC
Q psy5744 126 SRSSFKCPRCLKTFTDLEPCLLV-----LWCACPCK 156 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~~L~-----d~~~F~C~ 156 (157)
+...|.|+.|++.|+....+..- +...|.|+
T Consensus 9 ~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~ 44 (46)
T 2eoe_A 9 GEKPYKCNECGKVFTQNSHLANHQRIHTGVKPSGPS 44 (46)
T ss_dssp CCCSSEETTTTEECSSHHHHHHHHGGGSCCCSCSSC
T ss_pred CCCCeECCCcChhhCCHHHHHHHHHHcCCCCCCCCC
Confidence 45579999999999987766432 23367776
No 408
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=77.63 E-value=2.6 Score=24.82 Aligned_cols=35 Identities=11% Similarity=0.190 Sum_probs=26.4
Q ss_pred HHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhh
Q psy5744 35 LIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKN 71 (157)
Q Consensus 35 vIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~ 71 (157)
-|+..+. ..++..+||+.+|++.+.|+..+..+.+
T Consensus 5 ~vl~l~~--~g~s~~eIA~~l~is~~tV~~~~~~~~~ 39 (61)
T 2jpc_A 5 QVLKLID--EGYTNHGISEKLHISIKTVETHRMNMMR 39 (61)
T ss_dssp HHHHHHH--TSCCSHHHHHHTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHH--cCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 3444432 3578999999999999999988876653
No 409
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=77.60 E-value=0.93 Score=24.91 Aligned_cols=31 Identities=16% Similarity=0.238 Sum_probs=21.5
Q ss_pred CCCeeecCCCCCccchhhhhhcc-----CCCCcccC
Q psy5744 126 SRSSFKCPRCLKTFTDLEPCLLV-----LWCACPCK 156 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~~L~-----d~~~F~C~ 156 (157)
....|.|+.|++.|+....+.-- +...|.|+
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~ 44 (46)
T 2eoh_A 9 GKKPYECKECRKTFIQIGHLNQHKRVHTGERSSGPS 44 (46)
T ss_dssp CSCSCCCSSSCCCCSSHHHHHHHHHHCSSCCSCSTT
T ss_pred CCCCcCCCCcCchhCCHHHHHHHHHHhCCCCCCCCC
Confidence 34569999999999987665321 23467776
No 410
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A
Probab=77.57 E-value=0.99 Score=24.79 Aligned_cols=31 Identities=13% Similarity=0.203 Sum_probs=21.9
Q ss_pred CCCeeecCCCCCccchhhhhhcc-----CCCCcccC
Q psy5744 126 SRSSFKCPRCLKTFTDLEPCLLV-----LWCACPCK 156 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~~L~-----d~~~F~C~ 156 (157)
+...|.|+.|++.|+....+..- +...|.|+
T Consensus 9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~ 44 (46)
T 2emk_A 9 GEKPYECKECGKAFSQTTHLIQHQRVHTGEKPSGPS 44 (46)
T ss_dssp SSCSCBCSSSCCBCSCHHHHHHHHHHHSSCCCSSCC
T ss_pred CCCceECCCCCchhCCHHHHHHHHHHcCCCCCCCCC
Confidence 34569999999999987765432 23467775
No 411
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=77.53 E-value=0.83 Score=24.99 Aligned_cols=31 Identities=16% Similarity=0.180 Sum_probs=21.6
Q ss_pred CCCeeecCCCCCccchhhhhhcc-----CCCCcccC
Q psy5744 126 SRSSFKCPRCLKTFTDLEPCLLV-----LWCACPCK 156 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~~L~-----d~~~F~C~ 156 (157)
+...|.|+.|++.|+....+..- +...|.|+
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~ 44 (46)
T 2ytr_A 9 GEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPS 44 (46)
T ss_dssp SCCTTCCTTTCCCCSSHHHHHHHHTTTTTCSCCCSC
T ss_pred CCcCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCC
Confidence 44569999999999987765432 12357775
No 412
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=77.53 E-value=1.2 Score=24.32 Aligned_cols=31 Identities=16% Similarity=0.218 Sum_probs=21.8
Q ss_pred CCCeeecCCCCCccchhhhhhcc-----CCCCcccC
Q psy5744 126 SRSSFKCPRCLKTFTDLEPCLLV-----LWCACPCK 156 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~~L~-----d~~~F~C~ 156 (157)
+...|.|+.|++.|+....+.-- +...|.|+
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~ 44 (46)
T 2ytd_A 9 GEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPS 44 (46)
T ss_dssp CCCSEECSSSCCEESSHHHHHHHHHHHTCCCSSCSS
T ss_pred CCcCeECCCCCCeeCChHHHHHHHHHcCCCCCCCCC
Confidence 34569999999999987765432 23467776
No 413
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=77.51 E-value=0.66 Score=27.81 Aligned_cols=22 Identities=14% Similarity=0.277 Sum_probs=16.8
Q ss_pred HHhhcCCCCeeecCCCCCccch
Q psy5744 120 EERDATSRSSFKCPRCLKTFTD 141 (157)
Q Consensus 120 ~~~~~~~~~~Y~Cp~C~~~Ys~ 141 (157)
+-.++....+|+|..||.+|.+
T Consensus 28 RsaDE~mT~Fy~C~~Cg~~w~~ 49 (50)
T 1tfi_A 28 RSADEPMTTFVVCNECGNRWKF 49 (50)
T ss_dssp SSSSSCCEEEEEESSSCCEEEC
T ss_pred cCCCCCceEEEEcCCCCCeEEe
Confidence 3345666779999999998865
No 414
>1u5t_B Defective in vacuolar protein sorting; VPS36P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=77.44 E-value=2.3 Score=31.64 Aligned_cols=44 Identities=7% Similarity=0.077 Sum_probs=37.5
Q ss_pred HHHHHHHhC-CC----cCHH-H-HHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 35 LIIDMLVRN-PC----MKED-D-ICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 35 vIlD~L~~~-~~----i~de-d-La~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
.|++.+-.. +. +|.. + +|..+|++....+..|..+.++|++-..
T Consensus 103 ~il~~~~~~~g~d~~~vt~~~~~la~~~~ws~~~a~e~L~~~e~~G~l~~D 153 (169)
T 1u5t_B 103 KLVDLIGDNPGSDLLRLTQILSSNNSKSNWTLGILMEVLQNCVDEGDLLID 153 (169)
T ss_dssp HHHHHHHHSCSBCHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHhcCCCCcccccHHHHHHHHHhCCCHHHHHHHHHHHHHcCCEEEE
Confidence 456665544 67 8999 9 9999999999999999999999999854
No 415
>3l9f_A Putative uncharacterized protein SMU.1604C; PADR, transcription regulator; 1.80A {Streptococcus mutans}
Probab=77.36 E-value=3.2 Score=31.63 Aligned_cols=54 Identities=20% Similarity=0.278 Sum_probs=38.8
Q ss_pred HHHHcCCCchHHHHHHHHhCCCcCHHHHHHHh--------CCChHHHHHHHHHHhhCcceeeeE
Q psy5744 24 VVRGFYSIEDSLIIDMLVRNPCMKEDDICELL--------KFERKMLRARISTLKNDKIIQTRL 79 (157)
Q Consensus 24 v~R~Fy~~e~ivIlD~L~~~~~i~dedLa~~l--------~i~~k~vRkiL~~L~~d~Lv~~~~ 79 (157)
+.+++.+-.+ .||-.| ..+.++=.||++.+ +++...|-.+|.+|+++|+|....
T Consensus 30 l~kG~ms~r~-~IL~lL-~~~p~~GYeL~~~l~~~~~~~~~~s~g~lY~~L~rLe~~GlI~~~~ 91 (204)
T 3l9f_A 30 MGRGSMQGKD-IILGIL-SKKERSGYEINDILQNQLSYFYDGTYGMIYPTLRKLEKDGKITKEV 91 (204)
T ss_dssp -----CCHHH-HHHHHT-SSCCEEHHHHHHHHHHTSTTTEECCTTCHHHHHHHHHHTTSEEEEE
T ss_pred HhhchhHHHH-HHHHHH-HcCCCCHHHHHHHHHHHhCCccCCCcchHHHHHHHHHHCCCeEEEe
Confidence 3444444333 455554 46789999999988 689999999999999999998763
No 416
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=77.31 E-value=1.1 Score=24.64 Aligned_cols=31 Identities=13% Similarity=0.205 Sum_probs=21.7
Q ss_pred CCCeeecCCCCCccchhhhhhcc-----CCCCcccC
Q psy5744 126 SRSSFKCPRCLKTFTDLEPCLLV-----LWCACPCK 156 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~~L~-----d~~~F~C~ 156 (157)
+...|.|+.|++.|+....+..- +...|.|+
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~ 44 (46)
T 2ytq_A 9 GEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPS 44 (46)
T ss_dssp CCCSCBCSSSCCBCSCHHHHHHHHTTTCCSCSSCCC
T ss_pred CCCCcCCCccChhhCChHHHHHHHHHhCCCCCCCCC
Confidence 44569999999999987665432 12357776
No 417
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=77.30 E-value=1 Score=24.84 Aligned_cols=31 Identities=13% Similarity=0.117 Sum_probs=21.4
Q ss_pred CCCeeecCCCCCccchhhhhhcc-----CCCCcccC
Q psy5744 126 SRSSFKCPRCLKTFTDLEPCLLV-----LWCACPCK 156 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~~L~-----d~~~F~C~ 156 (157)
+..-|.|+.|++.|+....+..- +..-|.|.
T Consensus 9 ~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~ 44 (46)
T 2eom_A 9 GERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGPS 44 (46)
T ss_dssp CCSSCCCSSSCCCCSSHHHHHHHHHHHSSCCCSSCC
T ss_pred CCCCcCCCCCCCeeCChHHHHHHHHHhCCCCCCCCC
Confidence 34569999999999987665432 23357774
No 418
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=77.29 E-value=1.4 Score=28.56 Aligned_cols=24 Identities=25% Similarity=0.641 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHhhcCCCCeeecCCCCCc
Q psy5744 110 LDVMRKRMEMEERDATSRSSFKCPRCLKT 138 (157)
Q Consensus 110 l~~m~~~L~~~~~~~~~~~~Y~Cp~C~~~ 138 (157)
+.++.++|+... ..-|.||.||+.
T Consensus 13 lRK~vkkie~~q-----~~ky~C~fCgk~ 36 (73)
T 1ffk_W 13 IRVRVRDVEIKH-----KKKYKCPVCGFP 36 (73)
T ss_pred HHHHHHHHHHhc-----ccCccCCCCCCc
Confidence 455555555543 457899999863
No 419
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=77.22 E-value=2.3 Score=25.98 Aligned_cols=22 Identities=27% Similarity=0.602 Sum_probs=15.9
Q ss_pred CCCCeeecCCCCCccchhhhhh
Q psy5744 125 TSRSSFKCPRCLKTFTDLEPCL 146 (157)
Q Consensus 125 ~~~~~Y~Cp~C~~~Ys~lda~~ 146 (157)
.....|.|+.|++.|+....+.
T Consensus 42 ~~~~~~~C~~C~~~f~~~~~L~ 63 (77)
T 2cot_A 42 TGEKPYKCDECGKAFIQRSHLI 63 (77)
T ss_dssp CCSCSEECSSSCCEESSHHHHH
T ss_pred CCCcCeeCCCCCCccCCHHHHH
Confidence 3445689999999888766553
No 420
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=76.80 E-value=0.6 Score=33.70 Aligned_cols=19 Identities=26% Similarity=0.513 Sum_probs=16.4
Q ss_pred CCCCeeecCCCCCccchhh
Q psy5744 125 TSRSSFKCPRCLKTFTDLE 143 (157)
Q Consensus 125 ~~~~~Y~Cp~C~~~Ys~ld 143 (157)
.....+.|+.||..|+..+
T Consensus 66 ~~p~~~~C~~CG~~~~~~~ 84 (139)
T 3a43_A 66 EEEAVFKCRNCNYEWKLKE 84 (139)
T ss_dssp EECCEEEETTTCCEEEGGG
T ss_pred ecCCcEECCCCCCEEeccc
Confidence 4467899999999999988
No 421
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=76.37 E-value=1 Score=24.83 Aligned_cols=31 Identities=23% Similarity=0.338 Sum_probs=21.6
Q ss_pred CCCeeecCCCCCccchhhhhhcc-----CCCCcccC
Q psy5744 126 SRSSFKCPRCLKTFTDLEPCLLV-----LWCACPCK 156 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~~L~-----d~~~F~C~ 156 (157)
+...|.|+.|++.|+....+..- +...|.|+
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~ 44 (46)
T 2ytm_A 9 GEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPS 44 (46)
T ss_dssp SCCSSSBTTTTBCCSSHHHHHHHHHHHHSCCCCCCC
T ss_pred CCCCcCCCCCCchhCCHHHHHHHHHHcCCCCCCCCC
Confidence 44579999999999987665422 23457775
No 422
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=76.33 E-value=5.1 Score=24.69 Aligned_cols=38 Identities=5% Similarity=0.121 Sum_probs=28.6
Q ss_pred CchHHHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHh
Q psy5744 31 IEDSLIIDMLVRNPCMKEDDICELLKFERKMLRARISTLK 70 (157)
Q Consensus 31 ~e~ivIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~ 70 (157)
+...-|+.++ ...++..+||+.+|++.+.|+..+....
T Consensus 19 ~~e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~~~~r~~ 56 (79)
T 1x3u_A 19 ERERQVLSAV--VAGLPNKSIAYDLDISPRTVEVHRANVM 56 (79)
T ss_dssp HHHHHHHHHH--TTTCCHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4444555543 4568999999999999999998887654
No 423
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=76.33 E-value=6.5 Score=29.76 Aligned_cols=46 Identities=11% Similarity=0.167 Sum_probs=37.4
Q ss_pred hHHHHHHHHhCC------CcCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 33 DSLIIDMLVRNP------CMKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 33 ~ivIlD~L~~~~------~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
.+-++.+|...+ .++=-++|+.|++++.-|-+.+..|++.||+...
T Consensus 9 ~l~~l~~l~~~~~l~~~~~~s~s~aA~~L~isq~avSr~I~~LE~~~L~~R~ 60 (230)
T 3cta_A 9 YYRAIKKIKEAAEASNRAYLTSSKLADMLGISQQSASRIIIDLEKNGYITRT 60 (230)
T ss_dssp HHHHHHHHHHHTTTSSEEECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHhcccccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEE
Confidence 445555554433 4778999999999999999999999999999865
No 424
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=75.95 E-value=2.7 Score=28.23 Aligned_cols=35 Identities=9% Similarity=0.080 Sum_probs=30.3
Q ss_pred hHHHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHH
Q psy5744 33 DSLIIDMLVRNPCMKEDDICELLKFERKMLRARIST 68 (157)
Q Consensus 33 ~ivIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~ 68 (157)
+-.|++.|..++ ++-.|||+.+|++...|++.|..
T Consensus 9 ~~~I~~~l~~~~-~ti~dlA~~~gVS~~TVsR~L~~ 43 (93)
T 2l0k_A 9 TIKIGKYIVETK-KTVRVIAKEFGVSKSTVHKDLTE 43 (93)
T ss_dssp HHHHHHHHHHHC-CCHHHHHHHHTSCHHHHHHHHTT
T ss_pred HHHHHHHHHHcC-CCHHHHHHHHCCCHHHHHHHHcC
Confidence 456788887766 89999999999999999999974
No 425
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}
Probab=75.85 E-value=2.1 Score=26.06 Aligned_cols=16 Identities=31% Similarity=0.652 Sum_probs=8.7
Q ss_pred CeeecCCCCCccchhh
Q psy5744 128 SSFKCPRCLKTFTDLE 143 (157)
Q Consensus 128 ~~Y~Cp~C~~~Ys~ld 143 (157)
..|.|+.|++.|+...
T Consensus 56 ~~~~C~~C~~~f~~~~ 71 (82)
T 2kmk_A 56 KPHKCQVCGKAFSQSS 71 (82)
T ss_dssp CCEECTTTSCEESSHH
T ss_pred CCCcCCCcchhhCChH
Confidence 3456666666555443
No 426
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=75.82 E-value=4.9 Score=24.40 Aligned_cols=26 Identities=8% Similarity=0.118 Sum_probs=22.5
Q ss_pred CCcCHHHHHHHhCCChHHHHHHHHHH
Q psy5744 44 PCMKEDDICELLKFERKMLRARISTL 69 (157)
Q Consensus 44 ~~i~dedLa~~l~i~~k~vRkiL~~L 69 (157)
..+|-+|||+.+|++.+.|+..+...
T Consensus 24 ~g~s~~eIA~~lgis~~tV~~~~~ra 49 (68)
T 2p7v_B 24 TDYTLEEVGKQFDVTRERIRQIEAKA 49 (68)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 46899999999999999988877743
No 427
>3u5c_Z RP45, S31, YS23, 40S ribosomal protein S25-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_V 3o30_Q 3o2z_Q 3u5g_Z
Probab=75.62 E-value=3.2 Score=28.88 Aligned_cols=37 Identities=16% Similarity=0.238 Sum_probs=34.5
Q ss_pred hCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 42 RNPCMKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 42 ~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
....||--.|+++|+|+-.--|++|..|.+.|+|+..
T Consensus 56 k~KlITpsvlseRlkI~gSLAR~aLreL~~kGlIk~V 92 (108)
T 3u5c_Z 56 TYRYVSVSVLVDRLKIGGSLARIALRHLEKEGIIKPI 92 (108)
T ss_dssp SCSSBSHHHHHHTTCCCTTHHHHHHHHHSSSSSCEEE
T ss_pred CCeEEeHHHhhhhhhhhHHHHHHHHHHHHHCCCEEEE
Confidence 3568999999999999999999999999999999876
No 428
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=75.58 E-value=2.3 Score=25.79 Aligned_cols=20 Identities=30% Similarity=0.577 Sum_probs=14.2
Q ss_pred CCCeeecCCCCCccchhhhh
Q psy5744 126 SRSSFKCPRCLKTFTDLEPC 145 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~ 145 (157)
+..-|.|+.||+.|+....+
T Consensus 29 ~ekp~~C~~C~k~F~~~~~L 48 (60)
T 4gzn_C 29 GYRPRSCPECGKCFRDQSEV 48 (60)
T ss_dssp TCCCEECTTTCCEESSHHHH
T ss_pred CCcCeECCCCCCCcCCHHHH
Confidence 44568888888888765543
No 429
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=75.47 E-value=2.1 Score=28.25 Aligned_cols=18 Identities=17% Similarity=0.451 Sum_probs=14.3
Q ss_pred CCCeeecCCCCCccchhh
Q psy5744 126 SRSSFKCPRCLKTFTDLE 143 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~ld 143 (157)
....|+|+.||-.|+...
T Consensus 24 em~~y~C~vCGyvYD~~~ 41 (81)
T 2kn9_A 24 DYKLFRCIQCGFEYDEAL 41 (81)
T ss_dssp CCCEEEETTTCCEEETTT
T ss_pred CcceEEeCCCCEEEcCCc
Confidence 356899999999988644
No 430
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=75.42 E-value=2.2 Score=30.03 Aligned_cols=24 Identities=21% Similarity=0.379 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHhhcCCCCeeecCCCCC
Q psy5744 109 KLDVMRKRMEMEERDATSRSSFKCPRCLK 137 (157)
Q Consensus 109 rl~~m~~~L~~~~~~~~~~~~Y~Cp~C~~ 137 (157)
.+.++.++++..... -|.||.||+
T Consensus 45 slRK~vkkiE~~q~a-----kytCPfCGk 68 (116)
T 3cc2_Z 45 VSRRRVAEIESEMNE-----DHACPNCGE 68 (116)
T ss_dssp HHHHHHHHHHHHHHS-----CEECSSSCC
T ss_pred HHHHHHHHHHHHhcc-----CCcCCCCCC
Confidence 355666666665533 688999987
No 431
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=75.41 E-value=0.64 Score=33.59 Aligned_cols=14 Identities=21% Similarity=0.802 Sum_probs=7.7
Q ss_pred CCeeecCCCCCccc
Q psy5744 127 RSSFKCPRCLKTFT 140 (157)
Q Consensus 127 ~~~Y~Cp~C~~~Ys 140 (157)
...|+||.|+..|+
T Consensus 42 g~l~vCPeC~hEW~ 55 (138)
T 2akl_A 42 GALLVCPECAHEWS 55 (138)
T ss_dssp SSSEEETTTTEEEC
T ss_pred CCeEECCccccccC
Confidence 33456666666654
No 432
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A
Probab=74.87 E-value=1.2 Score=21.95 Aligned_cols=17 Identities=35% Similarity=0.661 Sum_probs=13.4
Q ss_pred eeecC--CCCCccchhhhh
Q psy5744 129 SFKCP--RCLKTFTDLEPC 145 (157)
Q Consensus 129 ~Y~Cp--~C~~~Ys~lda~ 145 (157)
-|.|+ .|++.|+....+
T Consensus 2 p~~C~~~~C~k~f~~~~~L 20 (31)
T 1sp2_A 2 PFMCTWSYCGKRFTRSDEL 20 (31)
T ss_dssp CCBCCSTTCCCBCSSHHHH
T ss_pred CcCCcCCCCCcccCCHhHH
Confidence 48898 999999876544
No 433
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=74.64 E-value=5.7 Score=25.26 Aligned_cols=36 Identities=8% Similarity=0.245 Sum_probs=27.2
Q ss_pred hHHHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHh
Q psy5744 33 DSLIIDMLVRNPCMKEDDICELLKFERKMLRARISTLK 70 (157)
Q Consensus 33 ~ivIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~ 70 (157)
..-|+.++ ...++..+||+.||++.+.|+..+....
T Consensus 26 e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~~l~r~~ 61 (82)
T 1je8_A 26 ERDILKLI--AQGLPNKMIARRLDITESTVKVHVKHML 61 (82)
T ss_dssp HHHHHHHH--TTTCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 34444443 3458999999999999999998887654
No 434
>3sqn_A Conserved domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MGA family; 2.31A {Enterococcus faecalis}
Probab=74.41 E-value=2.4 Score=36.26 Aligned_cols=48 Identities=4% Similarity=0.233 Sum_probs=41.2
Q ss_pred HHHcCCCc----hHHHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhhC
Q psy5744 25 VRGFYSIE----DSLIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKND 72 (157)
Q Consensus 25 ~R~Fy~~e----~ivIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d 72 (157)
++.|+.+. ..-|+..|+.++++|-.+||+.+|++.+.||.-+..|.+.
T Consensus 8 ~~~~llek~~~R~~~IL~~L~~~~~it~~eLA~~L~VS~RTIr~dI~~In~~ 59 (485)
T 3sqn_A 8 LKRVITEKDLLRQIRLLEQLLNVPQLTAKRLAAQIQTTERTVFSDLQYIRSQ 59 (485)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHCCSCBCGGGHHHHTSCHHHHHHHHHHHHTT
T ss_pred HHHHHhCChHHHHHHHHHHHHhCCCcCHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 55566554 4679999998889999999999999999999999998865
No 435
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=74.07 E-value=1.1 Score=24.51 Aligned_cols=31 Identities=13% Similarity=0.163 Sum_probs=21.5
Q ss_pred CCCeeecCCCCCccchhhhhhcc-----CCCCcccC
Q psy5744 126 SRSSFKCPRCLKTFTDLEPCLLV-----LWCACPCK 156 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~~L~-----d~~~F~C~ 156 (157)
+...|.|+.|++.|+....+..- +...|.|+
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~ 44 (46)
T 2ytt_A 9 GEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGPS 44 (46)
T ss_dssp CCCTTCCSSSCCCCSSHHHHHHHHTHHHHCCCCSCC
T ss_pred CCCCeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCC
Confidence 44569999999999987765432 13356665
No 436
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=73.97 E-value=1.3 Score=26.46 Aligned_cols=21 Identities=24% Similarity=0.355 Sum_probs=15.0
Q ss_pred CCCeeecCCCCCccchhhhhh
Q psy5744 126 SRSSFKCPRCLKTFTDLEPCL 146 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~~ 146 (157)
+...|.|+.|++.|+....+.
T Consensus 15 ~~~~~~C~~C~k~f~~~~~l~ 35 (73)
T 2ctu_A 15 GDRSQKCSKCGIIFIRRSTLS 35 (73)
T ss_dssp CCSEEECSSSCCEEECCCCCC
T ss_pred CCCCeeCCcccchhCCHHHhC
Confidence 445788999998887655443
No 437
>1ucr_A Protein DSVD; dissimilatory sulfite reductase D, DNA binding motif, sulfate-reducing bacteria, winged-helix motif, unknown function; 1.20A {Desulfovibrio vulgaris} SCOP: a.4.5.45 PDB: 1wq2_A
Probab=73.76 E-value=4.2 Score=26.63 Aligned_cols=45 Identities=16% Similarity=0.375 Sum_probs=36.6
Q ss_pred HHHHHHHHhC----CCcCHHHHHHHh-CCChHHHHHHHHHHhhCcceeee
Q psy5744 34 SLIIDMLVRN----PCMKEDDICELL-KFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 34 ivIlD~L~~~----~~i~dedLa~~l-~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
-.|||.|-.. .-..=.|+++.+ +.++++|.++++.|-+++-+.|-
T Consensus 6 ~~Ile~l~~k~~~KskfYf~D~~k~~P~~k~r~vKK~~~~LV~Eg~leyw 55 (78)
T 1ucr_A 6 QKVVDFLNSKSGSKSKFYFNDFTDLFPDMKQREVKKILTALVNDEVLEYW 55 (78)
T ss_dssp HHHHHHHSSHHHHSSCEEHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHhcccccccchHHHHHHHccccCHHHHHHHHHHHHhcCceEEE
Confidence 3577777632 244456999999 99999999999999999999885
No 438
>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger, ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A 1ldk_A 1ldk_B 3rtr_A
Probab=73.65 E-value=7 Score=35.35 Aligned_cols=68 Identities=12% Similarity=0.209 Sum_probs=51.5
Q ss_pred ccccchHHHHHHHHHHHHHcCCCc---------------------------------hHHHHHHHHhCCCcCHHHHHHHh
Q psy5744 9 VHTEVPTSLKQLSRLVVRGFYSIE---------------------------------DSLIIDMLVRNPCMKEDDICELL 55 (157)
Q Consensus 9 ~~~~ip~~~~~Lv~~v~R~Fy~~e---------------------------------~ivIlD~L~~~~~i~dedLa~~l 55 (157)
....+|+.+...+..... ||... +..||-++-.+..+|-++|++.+
T Consensus 535 ~~~~lP~~l~~~~~~F~~-fY~~~~~~RkL~W~~~lg~~~l~~~~~~~~~~l~vs~~Qa~iLllFn~~~~~t~~ei~~~t 613 (760)
T 1ldj_A 535 CTFALPSELERSYQRFTA-FYASRHSGRKLTWLYQLSKGELVTNCFKNRYTLQASTFQMAILLQYNTEDAYTVQQLTDST 613 (760)
T ss_dssp SCCCCCGGGHHHHHHHHH-HTTTTCTTCCEEECGGGCCCEEEESSSSSCCEEECCHHHHHHHHGGGSSSEEEHHHHHHHT
T ss_pred CCCcCCHHHHHHHHHHHH-HHHHhCCCCeEEEecccccEEEEEEECCceEEEEEcHHHHHHHHHhcCCCCcCHHHHHHHH
Confidence 345678888888776654 44432 34455444445789999999999
Q ss_pred CCChHHHHHHHHHHhhCcceee
Q psy5744 56 KFERKMLRARISTLKNDKIIQT 77 (157)
Q Consensus 56 ~i~~k~vRkiL~~L~~d~Lv~~ 77 (157)
||+..++++.|..|...|++..
T Consensus 614 ~i~~~~l~r~L~~l~k~~iL~~ 635 (760)
T 1ldj_A 614 QIKMDILAQVLQILLKSKLLVL 635 (760)
T ss_dssp CCCHHHHHHHHHHHHHTTTEEC
T ss_pred CcCHHHHHHHHHHHHHCCccee
Confidence 9999999999999999999973
No 439
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=73.56 E-value=4.3 Score=27.20 Aligned_cols=56 Identities=16% Similarity=0.230 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHHHHcCC-----CchHHHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhh
Q psy5744 14 PTSLKQLSRLVVRGFYS-----IEDSLIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKN 71 (157)
Q Consensus 14 p~~~~~Lv~~v~R~Fy~-----~e~ivIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~ 71 (157)
|.....++..+.+.=.. +...-|+.++. ..++..|||+.||++.+.|+..+..+.+
T Consensus 15 ~~~~~~~l~~l~~~~~~~~~Lt~re~~Vl~l~~--~G~s~~EIA~~L~iS~~TV~~~l~ri~~ 75 (99)
T 1p4w_A 15 PESVAKLLEKISAGGYGDKRLSPKESEVLRLFA--EGFLVTEIAKKLNRSIKTISSQKKSAMM 75 (99)
T ss_dssp CSHHHHHHHHHHCCCCSSSSCCHHHHHHHHHHH--HTCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHccCCcccCCCCHHHHHHHHHHH--cCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 33444455555443222 22445665544 4679999999999999999888876653
No 440
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=73.26 E-value=5.6 Score=23.75 Aligned_cols=27 Identities=11% Similarity=0.163 Sum_probs=22.7
Q ss_pred CCcCHHHHHHHhCCChHHHHHHHHHHh
Q psy5744 44 PCMKEDDICELLKFERKMLRARISTLK 70 (157)
Q Consensus 44 ~~i~dedLa~~l~i~~k~vRkiL~~L~ 70 (157)
...+-.+||+.+|++.+.|++.+....
T Consensus 30 ~g~s~~eIA~~lgis~~tv~~~~~ra~ 56 (70)
T 2o8x_A 30 LGLSYADAAAVCGCPVGTIRSRVARAR 56 (70)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 458999999999999999988777543
No 441
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=73.15 E-value=3.7 Score=28.26 Aligned_cols=34 Identities=12% Similarity=0.097 Sum_probs=30.0
Q ss_pred CcCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 45 CMKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 45 ~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
..+-.|||..+|++.+.++.+|..|.+.|.|..-
T Consensus 20 p~~~~~la~~~~~~~~~~~~~l~~l~~~G~l~~i 53 (121)
T 2pjp_A 20 PWWVRDLAKETGTDEQAMRLTLRQAAQQGIITAI 53 (121)
T ss_dssp CEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEe
Confidence 3456699999999999999999999999988754
No 442
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=72.90 E-value=4.3 Score=25.01 Aligned_cols=24 Identities=8% Similarity=0.097 Sum_probs=20.9
Q ss_pred CCcCHHHHHHHhCCChHHHHHHHH
Q psy5744 44 PCMKEDDICELLKFERKMLRARIS 67 (157)
Q Consensus 44 ~~i~dedLa~~l~i~~k~vRkiL~ 67 (157)
..+|-+|||+.+|++...|+..+.
T Consensus 29 ~~~s~~eIA~~l~is~~tV~~~~~ 52 (73)
T 1ku3_A 29 REHTLEEVGAYFGVTRERIRQIEN 52 (73)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHH
Confidence 578999999999999998888554
No 443
>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A
Probab=72.54 E-value=1.4 Score=21.05 Aligned_cols=17 Identities=24% Similarity=0.641 Sum_probs=13.3
Q ss_pred eeecC--CCCCccchhhhh
Q psy5744 129 SFKCP--RCLKTFTDLEPC 145 (157)
Q Consensus 129 ~Y~Cp--~C~~~Ys~lda~ 145 (157)
.|.|+ .|++.|+....+
T Consensus 2 ~~~C~~~~C~k~f~~~~~l 20 (29)
T 2ab3_A 2 VYVCHFENCGRSFNDRRKL 20 (29)
T ss_dssp CEEECSTTTCEEESSHHHH
T ss_pred CCCCcCCcCcCccCCHHHH
Confidence 48999 999999865543
No 444
>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=72.36 E-value=3.5 Score=24.44 Aligned_cols=19 Identities=26% Similarity=0.464 Sum_probs=14.9
Q ss_pred CCCCeeecC-CCCCccchhh
Q psy5744 125 TSRSSFKCP-RCLKTFTDLE 143 (157)
Q Consensus 125 ~~~~~Y~Cp-~C~~~Ys~ld 143 (157)
.....|.|+ .|++.|+.-.
T Consensus 32 ~~~~p~~C~~~C~k~f~~~~ 51 (66)
T 2eod_A 32 CPRLPVACPNQCGVGTVARE 51 (66)
T ss_dssp CSSSEEECTTCCSCCEEETT
T ss_pred cCCcCccCCcccCcccccHH
Confidence 456789999 9999987643
No 445
>2xzm_8 RPS25E,; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_8
Probab=72.36 E-value=4.1 Score=29.67 Aligned_cols=35 Identities=17% Similarity=0.332 Sum_probs=33.1
Q ss_pred CCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 44 PCMKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 44 ~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
..||-..|+++|+|+..--|++|..|.+.|+|+..
T Consensus 62 KlITpsvlseRlkI~gSLARkaLreL~~kGlIk~V 96 (143)
T 2xzm_8 62 KVLTVSTVVEKLKVNGSLARQLMRTMADRKLVEKV 96 (143)
T ss_dssp SEECHHHHHHHHCBCHHHHHHHHHHHHHTTSEEEE
T ss_pred eeecHHHHHHHhcchHHHHHHHHHHHHHCCCEEEE
Confidence 57999999999999999999999999999999865
No 446
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=72.08 E-value=9.3 Score=27.70 Aligned_cols=48 Identities=4% Similarity=0.161 Sum_probs=40.7
Q ss_pred CchHHHHHHHHhC-CCcCHHHHHHHh-------CCChHHHHHHHHHHhhCcceeee
Q psy5744 31 IEDSLIIDMLVRN-PCMKEDDICELL-------KFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 31 ~e~ivIlD~L~~~-~~i~dedLa~~l-------~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
+.-..|++.|... +.+|-+||.+.+ +++.-.|=+.|..|.+.|||...
T Consensus 33 ~qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~~i 88 (162)
T 4ets_A 33 KQREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTSI 88 (162)
T ss_dssp HHHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 3357899999974 689999998866 48899999999999999999864
No 447
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=71.83 E-value=2.4 Score=25.83 Aligned_cols=16 Identities=13% Similarity=0.411 Sum_probs=12.3
Q ss_pred CeeecCCCCCccchhh
Q psy5744 128 SSFKCPRCLKTFTDLE 143 (157)
Q Consensus 128 ~~Y~Cp~C~~~Ys~ld 143 (157)
..|+|+.||-.|+...
T Consensus 2 ~~y~C~~CGyvYd~~~ 17 (55)
T 2v3b_B 2 RKWQCVVCGFIYDEAL 17 (55)
T ss_dssp CEEEETTTCCEEETTT
T ss_pred CcEEeCCCCeEECCCc
Confidence 3689999998887644
No 448
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=71.71 E-value=2.4 Score=25.52 Aligned_cols=16 Identities=13% Similarity=0.438 Sum_probs=12.5
Q ss_pred CeeecCCCCCccchhh
Q psy5744 128 SSFKCPRCLKTFTDLE 143 (157)
Q Consensus 128 ~~Y~Cp~C~~~Ys~ld 143 (157)
..|+|+.||-.|+...
T Consensus 2 ~~y~C~~CGyvYd~~~ 17 (52)
T 1e8j_A 2 DIYVCTVCGYEYDPAK 17 (52)
T ss_dssp CCEECSSSCCCCCTTT
T ss_pred CcEEeCCCCeEEcCCc
Confidence 3699999998887544
No 449
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=71.10 E-value=1.3 Score=30.86 Aligned_cols=18 Identities=17% Similarity=0.543 Sum_probs=14.0
Q ss_pred CCCCeeecCCCCCccchh
Q psy5744 125 TSRSSFKCPRCLKTFTDL 142 (157)
Q Consensus 125 ~~~~~Y~Cp~C~~~Ys~l 142 (157)
.....|.|+.||..|...
T Consensus 69 ~~p~~~~C~~CG~~~e~~ 86 (119)
T 2kdx_A 69 DEKVELECKDCSHVFKPN 86 (119)
T ss_dssp EECCEEECSSSSCEECSC
T ss_pred eccceEEcCCCCCEEeCC
Confidence 345689999999998873
No 450
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=71.03 E-value=1.9 Score=28.04 Aligned_cols=31 Identities=26% Similarity=0.400 Sum_probs=21.5
Q ss_pred CCCeeecCCCCCccchhhhhhcc-----CCCCcccC
Q psy5744 126 SRSSFKCPRCLKTFTDLEPCLLV-----LWCACPCK 156 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~~L~-----d~~~F~C~ 156 (157)
....|+||.|++.|+.-..+.-- +.--|.|+
T Consensus 25 ~~~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~ 60 (85)
T 2lv2_A 25 SAECHLCPVCGESFASKGAQERHLRLLHAAQVFPCK 60 (85)
T ss_dssp CCTTEECTTSCCEESSHHHHHHHHHTTSCSSSEECT
T ss_pred CCCCEECCCCCCCcCcHHHHhhhhhhccCCCccCCC
Confidence 44569999999999987765432 12357775
No 451
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=70.80 E-value=2.8 Score=26.83 Aligned_cols=18 Identities=11% Similarity=0.468 Sum_probs=13.6
Q ss_pred CCCeeecCCCCCccchhh
Q psy5744 126 SRSSFKCPRCLKTFTDLE 143 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~ld 143 (157)
....|+|+.||-.|+...
T Consensus 4 ~m~~y~C~vCGyiYd~~~ 21 (70)
T 1dx8_A 4 DEGKYECEACGYIYEPEK 21 (70)
T ss_dssp CSSCEEETTTCCEECTTT
T ss_pred CCceEEeCCCCEEEcCCC
Confidence 445799999998887543
No 452
>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structu by NIH, protein structure initiative, PSI; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60
Probab=70.62 E-value=5.6 Score=29.39 Aligned_cols=36 Identities=11% Similarity=0.261 Sum_probs=30.5
Q ss_pred HHHHHHh--CCCcCHHHHHHHhC--CChHHHHHHHHHHhh
Q psy5744 36 IIDMLVR--NPCMKEDDICELLK--FERKMLRARISTLKN 71 (157)
Q Consensus 36 IlD~L~~--~~~i~dedLa~~l~--i~~k~vRkiL~~L~~ 71 (157)
++++++. ...++-++||+.++ ++..+|+.+|..|.+
T Consensus 11 ~iEAlLf~~~~pvs~~~La~~~~~~~~~~~v~~~l~~L~~ 50 (162)
T 1t6s_A 11 SLEALIFSSEEPVNLQTLSQITAHKFTPSELQEAVDELNR 50 (162)
T ss_dssp HHHHHHHHCSSCBCHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHhCcCCCHHHHHHHHHHHHH
Confidence 4566663 45699999999999 999999999999975
No 453
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}
Probab=70.50 E-value=3.3 Score=25.10 Aligned_cols=21 Identities=19% Similarity=0.423 Sum_probs=16.5
Q ss_pred CCCeeecCCCCCccchhhhhh
Q psy5744 126 SRSSFKCPRCLKTFTDLEPCL 146 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~~ 146 (157)
+...|.|+.|++.|+....+.
T Consensus 26 ~~~~~~C~~C~~~f~~~~~l~ 46 (82)
T 2kmk_A 26 DTRPYPCQYCGKRFHQKSDMK 46 (82)
T ss_dssp TCCCEECSSSCCEESSHHHHH
T ss_pred CCCCeeCCcCChhhCCHHHHH
Confidence 455799999999998766553
No 454
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=70.48 E-value=2.2 Score=26.04 Aligned_cols=20 Identities=20% Similarity=0.489 Sum_probs=15.1
Q ss_pred CCCeeecCCCCCccchhhhh
Q psy5744 126 SRSSFKCPRCLKTFTDLEPC 145 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~ 145 (157)
+...|.|+.|++.|+....+
T Consensus 12 ~~k~~~C~~C~k~f~~~~~L 31 (77)
T 2ct1_A 12 GEKPYECYICHARFTQSGTM 31 (77)
T ss_dssp CCCSEECTTTCCEESCHHHH
T ss_pred CCCCeECCCcCchhCCHHHH
Confidence 34568999999999876654
No 455
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A
Probab=70.17 E-value=3.4 Score=25.82 Aligned_cols=20 Identities=20% Similarity=0.524 Sum_probs=15.3
Q ss_pred CCCeeecCCCCCccchhhhh
Q psy5744 126 SRSSFKCPRCLKTFTDLEPC 145 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~ 145 (157)
+...|.|+.|++.|+....+
T Consensus 28 ~~~~~~C~~C~k~f~~~~~L 47 (88)
T 1llm_C 28 GEKPFACDICGRKFARSDER 47 (88)
T ss_dssp CCCCEECTTTCCEESSHHHH
T ss_pred CCCCccCCCCCCccCCHHHH
Confidence 34569999999999876654
No 456
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=70.16 E-value=1.9 Score=23.89 Aligned_cols=31 Identities=19% Similarity=0.142 Sum_probs=21.6
Q ss_pred CCCeeecCCCCCccchhhhhhcc-----CCCCcccC
Q psy5744 126 SRSSFKCPRCLKTFTDLEPCLLV-----LWCACPCK 156 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~~L~-----d~~~F~C~ 156 (157)
....|.|+.|++.|+....+..- +.-.|.|+
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~ 44 (48)
T 2epr_A 9 TRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSG 44 (48)
T ss_dssp CCCSEEETTTTEEESSHHHHHHHGGGSCSCCCCCSC
T ss_pred CCcCeeCCCCCcccCCHHHHHHHHHhcCCCCCccCC
Confidence 45579999999999877665432 12357775
No 457
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=69.97 E-value=1.7 Score=21.45 Aligned_cols=17 Identities=24% Similarity=0.561 Sum_probs=13.5
Q ss_pred eeecC--CCCCccchhhhh
Q psy5744 129 SFKCP--RCLKTFTDLEPC 145 (157)
Q Consensus 129 ~Y~Cp--~C~~~Ys~lda~ 145 (157)
.|.|+ .|++.|+....+
T Consensus 3 ~~~C~~~~C~k~f~~~~~L 21 (32)
T 1zfd_A 3 PYSCDHPGCDKAFVRNHDL 21 (32)
T ss_dssp SBCCCCTTCCCCBSSSHHH
T ss_pred CCcCcCCCCCCccCCHHHH
Confidence 48999 899999876543
No 458
>2z99_A Putative uncharacterized protein; winged helix domain, cell cycle, cell division, chromosome partition, cytoplasm; 2.30A {Mycobacterium tuberculosis}
Probab=69.70 E-value=17 Score=28.20 Aligned_cols=50 Identities=8% Similarity=-0.005 Sum_probs=41.0
Q ss_pred CCchHHHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeeeEeee
Q psy5744 30 SIEDSLIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQTRLRME 82 (157)
Q Consensus 30 ~~e~ivIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~~~~e 82 (157)
+.-..-++..+..++.+|=-+|++..|++. ..++..|.+.|||...-+.+
T Consensus 99 s~aaLEtLaiIAy~QPITR~eI~~irGv~~---~~~v~~Lle~gLI~e~Gr~~ 148 (219)
T 2z99_A 99 TRAALETLAVVAYRQPVTRARVSAVRGVNV---DAVMRTLLARGLITEVGTDA 148 (219)
T ss_dssp CHHHHHHHHHHHHHCSEEHHHHHHHHTSCC---HHHHHHHHHTTSEEEEEECT
T ss_pred CHHHHHHHHHHHHcCCcCHHHHHHHHCCCH---HHHHHHHHHCCCEEEccccC
Confidence 333455787777789999999999999998 58999999999999875443
No 459
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=69.46 E-value=4.4 Score=25.46 Aligned_cols=19 Identities=21% Similarity=0.405 Sum_probs=11.7
Q ss_pred CCeeecCCCCCccchhhhh
Q psy5744 127 RSSFKCPRCLKTFTDLEPC 145 (157)
Q Consensus 127 ~~~Y~Cp~C~~~Ys~lda~ 145 (157)
...|.|+.|++.|.....+
T Consensus 62 ~~~~~C~~C~~~f~~~~~l 80 (96)
T 2dmd_A 62 ERPFKCQICPYASRNSSQL 80 (96)
T ss_dssp CCCEECSSSSCEESSHHHH
T ss_pred CCCccCCCCCCccCCHHHH
Confidence 3457777777777655443
No 460
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A
Probab=69.39 E-value=3.5 Score=25.49 Aligned_cols=17 Identities=24% Similarity=0.808 Sum_probs=10.6
Q ss_pred CeeecCCCCCccchhhh
Q psy5744 128 SSFKCPRCLKTFTDLEP 144 (157)
Q Consensus 128 ~~Y~Cp~C~~~Ys~lda 144 (157)
..|.|+.|++.|+....
T Consensus 64 ~~~~C~~C~~~f~~~~~ 80 (89)
T 2wbs_A 64 RPFQCQKCDRAFSRSDH 80 (89)
T ss_dssp CCEECSSSSCEESSHHH
T ss_pred CCccCCCCCcccCCHHH
Confidence 35777777777665443
No 461
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=69.38 E-value=6.3 Score=25.39 Aligned_cols=39 Identities=10% Similarity=0.201 Sum_probs=29.1
Q ss_pred CCchHHHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHh
Q psy5744 30 SIEDSLIIDMLVRNPCMKEDDICELLKFERKMLRARISTLK 70 (157)
Q Consensus 30 ~~e~ivIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~ 70 (157)
.+...-|+.++. ..++..+||+.||++.+.|+..+....
T Consensus 31 t~~e~~vl~l~~--~g~s~~eIA~~l~is~~tV~~~l~r~~ 69 (91)
T 2rnj_A 31 TEREMEILLLIA--KGYSNQEIASASHITIKTVKTHVSNIL 69 (91)
T ss_dssp CSHHHHHHHHHH--TTCCTTHHHHHHTCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH--cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 344455555542 458999999999999999998887655
No 462
>3f2g_A Alkylmercury lyase; MERB, organomercurial lyase, mercury resistance, mercuric resistance, plasmid; 1.78A {Escherichia coli} PDB: 3f2h_A 3fn8_A 1s6l_A 3f0o_A 3f0p_A 3f2f_A
Probab=69.20 E-value=6.1 Score=30.72 Aligned_cols=37 Identities=8% Similarity=0.188 Sum_probs=32.3
Q ss_pred HHHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHh
Q psy5744 34 SLIIDMLVRNPCMKEDDICELLKFERKMLRARISTLK 70 (157)
Q Consensus 34 ivIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~ 70 (157)
+.++..|.....++-++||..+|++..+++.+|..|-
T Consensus 25 ~~llr~la~Grpv~~~~LA~~~g~~~~~v~~~L~~l~ 61 (220)
T 3f2g_A 25 VPLLRELAKGRPVSRTTLAGILDWPAERVAAVLEQAT 61 (220)
T ss_dssp HHHHHHHTTTSCBCHHHHHHHHTCCHHHHHHHHHHCT
T ss_pred HHHHHHHhcCCCCCHHHHHHHhCcCHHHHHHHHHhCC
Confidence 4567777766789999999999999999999999986
No 463
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Probab=68.92 E-value=3.8 Score=25.37 Aligned_cols=21 Identities=19% Similarity=0.659 Sum_probs=14.6
Q ss_pred CCCeeecCCCCCccchhhhhh
Q psy5744 126 SRSSFKCPRCLKTFTDLEPCL 146 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~~ 146 (157)
+...|.|+.|++.|+....+.
T Consensus 31 ~~~~~~C~~C~~~f~~~~~l~ 51 (90)
T 1a1h_A 31 GQKPFQCRICMRNFSRSDHLT 51 (90)
T ss_dssp CCCCEECTTTCCEESCHHHHH
T ss_pred CCCCccCCCCCcccCCHHHHH
Confidence 345688888888887766543
No 464
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=68.79 E-value=18 Score=27.96 Aligned_cols=46 Identities=20% Similarity=0.073 Sum_probs=37.4
Q ss_pred CchHHHHHHHHhCCCcCHHHHHHHh-----CCChHHHHHHHHHHhhCcceee
Q psy5744 31 IEDSLIIDMLVRNPCMKEDDICELL-----KFERKMLRARISTLKNDKIIQT 77 (157)
Q Consensus 31 ~e~ivIlD~L~~~~~i~dedLa~~l-----~i~~k~vRkiL~~L~~d~Lv~~ 77 (157)
+..--|+.++.. +..+-.+|+..+ |++...+...|..|.+.|||..
T Consensus 282 ~~~~~~l~~la~-g~~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~ 332 (350)
T 2qen_A 282 PRYVDILRAIAL-GYNRWSLIRDYLAVKGTKIPEPRLYALLENLKKMNWIVE 332 (350)
T ss_dssp HHHHHHHHHHHT-TCCSHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEE
T ss_pred hhHHHHHHHHHh-CCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCEEe
Confidence 444557777665 567778999888 8999999999999999999974
No 465
>2co5_A Viral protein F93; viral protein-winged helix complex, winged helix, DNA-bindin WHTH, disulfide bond, STIV; 2.2A {Sulfolobus turreted icosahedral virus} SCOP: a.4.5.48
Probab=68.73 E-value=8.9 Score=25.72 Aligned_cols=59 Identities=22% Similarity=0.331 Sum_probs=39.3
Q ss_pred hHHHHHHHHhCC-CcCH----HHHHHHh--CCChHHHHHHHHHHhhCcceeeeEeeeecCCCceeEEEEEEecch
Q psy5744 33 DSLIIDMLVRNP-CMKE----DDICELL--KFERKMLRARISTLKNDKIIQTRLRMETGLDGKAQKVNYYFINYQ 100 (157)
Q Consensus 33 ~ivIlD~L~~~~-~i~d----edLa~~l--~i~~k~vRkiL~~L~~d~Lv~~~~~~e~~~~gk~~~~~yw~I~y~ 100 (157)
..+||..|..++ .+.- .+|++.. .++.-.|=.+|.+|+++|+|.... ++. +.||.|.-.
T Consensus 11 ~~~IL~lL~~~~~~~~g~~i~~ei~~~~~~~is~GtlYp~L~rLe~~GlI~~~~----~~~-----rk~Y~iT~~ 76 (99)
T 2co5_A 11 YYIILKVLVINGSRLEKKRLRSEILKRFDIDISDGVLYPLIDSLIDDKILREEE----APD-----GKVLFLTEK 76 (99)
T ss_dssp HHHHHHHHHHTTTEEEGGGHHHHHHHHHCCBCCHHHHHHHHHHHHHTTSEEEEC----CTT-----SCEEEECHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHCCCEEEee----CCC-----cEEEEECHH
Confidence 345676666432 2332 4566665 588899999999999999999763 222 456777643
No 466
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Probab=68.65 E-value=3.9 Score=25.29 Aligned_cols=20 Identities=20% Similarity=0.524 Sum_probs=15.8
Q ss_pred CCCeeecCCCCCccchhhhh
Q psy5744 126 SRSSFKCPRCLKTFTDLEPC 145 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~ 145 (157)
....|.|+.|++.|.....+
T Consensus 59 ~~~~~~C~~C~~~f~~~~~l 78 (90)
T 1a1h_A 59 GEKPFACDICGRKFARSDER 78 (90)
T ss_dssp CCCCEECTTTCCEESSHHHH
T ss_pred CCCCccCCCCCchhCCHHHH
Confidence 34569999999999876654
No 467
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=68.64 E-value=10 Score=30.33 Aligned_cols=48 Identities=17% Similarity=0.235 Sum_probs=39.4
Q ss_pred CchHHHHHHHHhC-CC------cCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 31 IEDSLIIDMLVRN-PC------MKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 31 ~e~ivIlD~L~~~-~~------i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
+.+-.||+.|-.+ |. -+-|+|.+.+||+.+...+++..|+.+|+|...
T Consensus 224 ~~a~~il~~L~~~~G~l~~~DkS~pe~I~~~f~~SK~~FKrAiG~L~K~~~I~~~ 278 (285)
T 3go5_A 224 NDAQMILTYLESNGGFMTLNDKSSPDDIKATFGISKGQFKKALGGLMKAGKIKQD 278 (285)
T ss_dssp HHHHHHHHHHHHTTTEESCCTTSCHHHHHHHHSSCHHHHHHHHHHHHHTTCEEEE
T ss_pred hHHHHHHHHHHhcCCeeccCCCCCHHHHHHHhCcCHHHHHHHHHHHhhCCcEEEc
Confidence 3455788888754 43 347999999999999999999999999999854
No 468
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=68.46 E-value=5.9 Score=25.42 Aligned_cols=25 Identities=8% Similarity=0.118 Sum_probs=22.2
Q ss_pred CCcCHHHHHHHhCCChHHHHHHHHH
Q psy5744 44 PCMKEDDICELLKFERKMLRARIST 68 (157)
Q Consensus 44 ~~i~dedLa~~l~i~~k~vRkiL~~ 68 (157)
..+|-.+||+.+|++...|+..+..
T Consensus 37 ~~~s~~EIA~~lgis~~tV~~~~~r 61 (87)
T 1tty_A 37 KPKTLEEVGQYFNVTRERIRQIEVK 61 (87)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 5799999999999999998887764
No 469
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=68.15 E-value=2.6 Score=25.71 Aligned_cols=19 Identities=21% Similarity=0.308 Sum_probs=11.9
Q ss_pred CCeeecCCCCCccchhhhh
Q psy5744 127 RSSFKCPRCLKTFTDLEPC 145 (157)
Q Consensus 127 ~~~Y~Cp~C~~~Ys~lda~ 145 (157)
...|.|+.|++.|+....+
T Consensus 5 ~k~~~C~~C~k~f~~~~~L 23 (78)
T 2d9h_A 5 SSGLQCEICGFTCRQKASL 23 (78)
T ss_dssp CCCEECSSSCCEESSHHHH
T ss_pred CcCeECCCCCCeeCCHHHH
Confidence 3457777777777655443
No 470
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=68.10 E-value=1.1 Score=35.66 Aligned_cols=43 Identities=12% Similarity=0.223 Sum_probs=0.0
Q ss_pred HHHHHHHhC---CCcCHHHHHHHh-CCChHHHHHHHHHHhhCcceeee
Q psy5744 35 LIIDMLVRN---PCMKEDDICELL-KFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 35 vIlD~L~~~---~~i~dedLa~~l-~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
.|+++|-.+ ..++-++|+..+ +++..+||++|..|.++|.| |.
T Consensus 211 ~Vl~~i~~~~~~~Gi~~~~I~~~l~~~~~~~v~~al~~L~~eG~I-Ys 257 (270)
T 2pi2_A 211 QVLNLIKACPRPEGLNFQDLKNQLKHMSVSSIKQAVDFLSNEGHI-YS 257 (270)
T ss_dssp ------------------------------------------------
T ss_pred HHHHHHHhCCCccCCCHHHHHHHhcCCCHHHHHHHHHHHHhCCEE-ec
Confidence 355555433 457778999988 79999999999999999999 54
No 471
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}
Probab=67.95 E-value=3.9 Score=25.83 Aligned_cols=17 Identities=24% Similarity=0.601 Sum_probs=8.7
Q ss_pred CeeecC--CCCCccchhhh
Q psy5744 128 SSFKCP--RCLKTFTDLEP 144 (157)
Q Consensus 128 ~~Y~Cp--~C~~~Ys~lda 144 (157)
..|.|+ .|++.|.....
T Consensus 44 ~~~~C~~~~C~~~f~~~~~ 62 (100)
T 2ebt_A 44 KPYKCTWEGCDWRFARSDE 62 (100)
T ss_dssp CCEECCSSSCCCEESSHHH
T ss_pred CCeeCCCCCCCCccCCHHH
Confidence 345564 46655554443
No 472
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=67.89 E-value=30 Score=26.97 Aligned_cols=74 Identities=19% Similarity=0.218 Sum_probs=47.3
Q ss_pred hHHHHHHHHh-----CCCcCH-------HHHHHHhCCCh---HHHHHHHHHHhhCcceeeeEeeeecCCCceeEEEEEEe
Q psy5744 33 DSLIIDMLVR-----NPCMKE-------DDICELLKFER---KMLRARISTLKNDKIIQTRLRMETGLDGKAQKVNYYFI 97 (157)
Q Consensus 33 ~ivIlD~L~~-----~~~i~d-------edLa~~l~i~~---k~vRkiL~~L~~d~Lv~~~~~~e~~~~gk~~~~~yw~I 97 (157)
...++-++.. +.+++- .++++.+|+++ ..+..+|..|.+.|||..... ..+..| .+....--+
T Consensus 288 ~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~L~~~gli~~~~~-~~~~~g-~y~~~~l~~ 365 (386)
T 2qby_A 288 SKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLGVEAVTQRRVSDIINELDMVGILTAKVV-NRGRYG-KTKEIGLAV 365 (386)
T ss_dssp HHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHTSEEEEEC-CCTTSC-CCEEEEESS
T ss_pred HHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCEEEEee-cCCCCC-CeEEEEeCC
Confidence 4456666652 234444 67799998877 899999999999999987522 111222 122334456
Q ss_pred cchhHHHHHHH
Q psy5744 98 NYQTFVNIVKY 108 (157)
Q Consensus 98 ~y~~~~~vik~ 108 (157)
+++.+.++++.
T Consensus 366 ~~~~v~~~l~~ 376 (386)
T 2qby_A 366 DKNIIVRSLIE 376 (386)
T ss_dssp CSHHHHHHHHH
T ss_pred CHHHHHHHHhc
Confidence 77778777764
No 473
>3dfg_A Xcrecx, regulatory protein RECX; RECX RECA, homologous recombination, tandem repeats, three-helix bundle, cytoplasm; 1.50A {Xanthomonas campestris PV}
Probab=67.89 E-value=16 Score=26.47 Aligned_cols=59 Identities=10% Similarity=-0.012 Sum_probs=39.0
Q ss_pred HHHHHHHHHHcCCCchH-HHHHHHHhCCCcCHHHHHHHh-----CCChHHHHHHHHHHhhCcceee
Q psy5744 18 KQLSRLVVRGFYSIEDS-LIIDMLVRNPCMKEDDICELL-----KFERKMLRARISTLKNDKIIQT 77 (157)
Q Consensus 18 ~~Lv~~v~R~Fy~~e~i-vIlD~L~~~~~i~dedLa~~l-----~i~~k~vRkiL~~L~~d~Lv~~ 77 (157)
.+|.+.+.+.-|+++.| -||+.|...+++.|+.-|+.. . +.+--++|-+.|...|+-..
T Consensus 35 ~EL~~KL~~kg~~~e~Ie~vl~~l~~~g~ldD~rfA~~~v~~~~~-~~~G~~~I~~eL~~KGI~~~ 99 (162)
T 3dfg_A 35 KELNRKLQARGIEPEAAQAAVERLAGEGWQDDVRFAASVVRNRAS-SGYGPLHIRAELGTHGLDSD 99 (162)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHT-TTCCHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH-ccccHHHHHHHHHHcCCCHH
Confidence 34555555555555444 488888889999999987765 1 12233577788888888654
No 474
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=67.84 E-value=8.4 Score=24.78 Aligned_cols=27 Identities=11% Similarity=0.102 Sum_probs=23.0
Q ss_pred CCCcCHHHHHHHhCCChHHHHHHHHHH
Q psy5744 43 NPCMKEDDICELLKFERKMLRARISTL 69 (157)
Q Consensus 43 ~~~i~dedLa~~l~i~~k~vRkiL~~L 69 (157)
-..++-.+||+.||++.+.|+..+...
T Consensus 51 ~~g~s~~eIA~~lgis~~tV~~~l~ra 77 (92)
T 3hug_A 51 YRGWSTAQIATDLGIAEGTVKSRLHYA 77 (92)
T ss_dssp TSCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 456899999999999999998877653
No 475
>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=67.47 E-value=3.3 Score=21.31 Aligned_cols=19 Identities=26% Similarity=0.581 Sum_probs=14.8
Q ss_pred CCeeecC--CCCCccchhhhh
Q psy5744 127 RSSFKCP--RCLKTFTDLEPC 145 (157)
Q Consensus 127 ~~~Y~Cp--~C~~~Ys~lda~ 145 (157)
..-|.|+ .|++.|+....+
T Consensus 4 ~k~~~C~~~~C~k~f~~~~~L 24 (38)
T 1bhi_A 4 DKPFLCTAPGCGQRFTNEDHL 24 (38)
T ss_dssp CCCEECCCTTTCCEESSHHHH
T ss_pred CcceECCCCCCCcccCCHHHH
Confidence 3469999 699999876654
No 476
>3u5c_K 40S ribosomal protein S10-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_K
Probab=67.17 E-value=3.5 Score=28.55 Aligned_cols=39 Identities=10% Similarity=0.169 Sum_probs=31.3
Q ss_pred CCChHHHHHHHHHHhhCcceeeeEeeeecCCCceeEEEEEEecchhHH
Q psy5744 56 KFERKMLRARISTLKNDKIIQTRLRMETGLDGKAQKVNYYFINYQTFV 103 (157)
Q Consensus 56 ~i~~k~vRkiL~~L~~d~Lv~~~~~~e~~~~gk~~~~~yw~I~y~~~~ 103 (157)
+++.=.|-+++..|+.-|+|+.. =+|..+|||++-+.+.
T Consensus 36 ~vpNL~Vik~mqSLkSrGyVkeq---------FaWrh~Yw~LTnEGie 74 (105)
T 3u5c_K 36 DTKNLYVIKALQSLTSKGYVKTQ---------FSWQYYYYTLTEEGVE 74 (105)
T ss_dssp SSCHHHHHHHHHHHHHTSSEEEE---------CTTTCCEEEECHHHHH
T ss_pred CccchhHHHHHhcccccceeccE---------ecceEEEEEEchhhHH
Confidence 46777999999999999998743 2488999999976543
No 477
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=66.74 E-value=5.6 Score=24.91 Aligned_cols=23 Identities=22% Similarity=0.326 Sum_probs=16.7
Q ss_pred hcCCCCeeecCCCCCccchhhhh
Q psy5744 123 DATSRSSFKCPRCLKTFTDLEPC 145 (157)
Q Consensus 123 ~~~~~~~Y~Cp~C~~~Ys~lda~ 145 (157)
.-.....|.|+.|++.|.....+
T Consensus 30 ~h~~~~~~~C~~C~~~f~~~~~l 52 (96)
T 2dmd_A 30 CHTGVKPYKCKTCDYAAADSSSL 52 (96)
T ss_dssp GCCCCCSEECSSSCCEESSHHHH
T ss_pred hcCCCCCEeCCCCCCccCCHHHH
Confidence 33455679999999999876654
No 478
>3maj_A DNA processing chain A; MCSG, PSI-2, structural genomics, protein structure initiati midwest center for structural genomics; HET: DNA; 2.05A {Rhodopseudomonas palustris}
Probab=66.61 E-value=6.6 Score=32.95 Aligned_cols=46 Identities=15% Similarity=0.170 Sum_probs=40.4
Q ss_pred CchHHHHHHHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceee
Q psy5744 31 IEDSLIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQT 77 (157)
Q Consensus 31 ~e~ivIlD~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~ 77 (157)
++.-.|+++|- .+.++-|+|+..+|++..+|..+|..|+-.|+|..
T Consensus 328 ~~~~~vl~~l~-~~~~~~D~l~~~~gl~~~~v~~~L~~LEl~G~v~~ 373 (382)
T 3maj_A 328 GDRTRILALLG-PSPVGIDDLIRLSGISPAVVRTILLELELAGRLER 373 (382)
T ss_dssp THHHHHHHHCC-SSCEEHHHHHHHHCCCHHHHHHHHHHHHHTTCCEE
T ss_pred hHHHHHHHhhC-CCCCCHHHHHHHHCcCHHHHHHHHHHHHhCCcEEe
Confidence 44567888875 57789999999999999999999999999999974
No 479
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=66.40 E-value=19 Score=24.08 Aligned_cols=50 Identities=14% Similarity=0.203 Sum_probs=31.0
Q ss_pred HHHHHHHHHHcCCCc-hHHHHHHHHh-CCCcCHHHHHHHhCCChHHHHHHHH
Q psy5744 18 KQLSRLVVRGFYSIE-DSLIIDMLVR-NPCMKEDDICELLKFERKMLRARIS 67 (157)
Q Consensus 18 ~~Lv~~v~R~Fy~~e-~ivIlD~L~~-~~~i~dedLa~~l~i~~k~vRkiL~ 67 (157)
...+..++...=+.+ .|+.+-..+. ...+|-++||+.+|++.+.||.++.
T Consensus 10 ~~~l~~aL~~Lp~reR~Vi~Lry~l~~~e~~s~~EIA~~lgiS~~tVr~~~~ 61 (99)
T 3t72_q 10 RAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEA 61 (99)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 344444444432222 3444433332 2579999999999999999888765
No 480
>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A
Probab=66.24 E-value=2.4 Score=31.83 Aligned_cols=19 Identities=16% Similarity=0.268 Sum_probs=12.6
Q ss_pred hcCCCCeeecCCCCCccch
Q psy5744 123 DATSRSSFKCPRCLKTFTD 141 (157)
Q Consensus 123 ~~~~~~~Y~Cp~C~~~Ys~ 141 (157)
++....||+|..||.+|.|
T Consensus 159 DE~mt~f~~C~~C~~~w~f 177 (178)
T 3po3_S 159 AAPLTTFCTCEACGNRWKF 177 (178)
T ss_dssp TSCCCCCEEETTTCCEECC
T ss_pred CCCCcEEEEcCCCCCeecc
Confidence 4555667777777777654
No 481
>2xzm_7 Plectin/S10 domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_7
Probab=66.20 E-value=4.8 Score=29.82 Aligned_cols=38 Identities=13% Similarity=0.201 Sum_probs=30.4
Q ss_pred CCChHHHHHHHHHHhhCcceeeeEeeeecCCCceeEEEEEEecchhH
Q psy5744 56 KFERKMLRARISTLKNDKIIQTRLRMETGLDGKAQKVNYYFINYQTF 102 (157)
Q Consensus 56 ~i~~k~vRkiL~~L~~d~Lv~~~~~~e~~~~gk~~~~~yw~I~y~~~ 102 (157)
+++-=+|=|+|..|+.-|+|+.. =+|..+|||++-+.|
T Consensus 36 ~vpNL~ViKamqSLkSRGyVkEq---------FaWrhyYw~LTnEGI 73 (162)
T 2xzm_7 36 GVPNLHCYILVRSLKDRGFLEEI---------FNWGFTYYYLNKEGC 73 (162)
T ss_dssp CCBHHHHHHHHHHHHHHTSEEEE---------EETTEEEEEECHHHH
T ss_pred CcCcHHHHHHHhcccccccccce---------eeeEEEEEEEchHHH
Confidence 36667899999999999999843 258899999996543
No 482
>2nz7_A NOD1, caspase recruitment domain-containing protein 4, CARD4; helix swapped, disulfide bond, apoptosis; 1.90A {Homo sapiens} PDB: 2nsn_A
Probab=66.19 E-value=6.3 Score=26.64 Aligned_cols=38 Identities=16% Similarity=0.383 Sum_probs=29.2
Q ss_pred HHHHHHHHhCCCcCHHHHHHHh---CCChHHHHHHHHHHhhC
Q psy5744 34 SLIIDMLVRNPCMKEDDICELL---KFERKMLRARISTLKND 72 (157)
Q Consensus 34 ivIlD~L~~~~~i~dedLa~~l---~i~~k~vRkiL~~L~~d 72 (157)
--++|.|+.++.++++| -+.. +-...+.|+++..+...
T Consensus 30 ~~lLD~LL~~~VL~~ee-~~I~~~~~T~~~kaR~Lld~v~~K 70 (98)
T 2nz7_A 30 QCLVDNLLKNDYFSAED-AEIVCACPTQPDKVRKILDLVQSK 70 (98)
T ss_dssp HHHHHHHHHTTSSCHHH-HHHHHTCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHH-HHHHccCCCcHHHHHHHHHHHHHH
Confidence 35899999999999888 4433 56678999999876543
No 483
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=66.16 E-value=4.8 Score=25.21 Aligned_cols=20 Identities=20% Similarity=0.567 Sum_probs=13.7
Q ss_pred CCCeeecCCCCCccchhhhh
Q psy5744 126 SRSSFKCPRCLKTFTDLEPC 145 (157)
Q Consensus 126 ~~~~Y~Cp~C~~~Ys~lda~ 145 (157)
....|.|+.|++.|+....+
T Consensus 32 ~~~~~~C~~C~~~f~~~~~l 51 (95)
T 2yt9_A 32 GEKPYSCPVCGLRFKRKDRM 51 (95)
T ss_dssp SSCSEECSSSCCEESCHHHH
T ss_pred CCCCCcCCCCCCccCCHHHH
Confidence 34568888888888765554
No 484
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=65.74 E-value=3.1 Score=25.01 Aligned_cols=14 Identities=14% Similarity=0.451 Sum_probs=11.1
Q ss_pred eeecCCCCCccchh
Q psy5744 129 SFKCPRCLKTFTDL 142 (157)
Q Consensus 129 ~Y~Cp~C~~~Ys~l 142 (157)
.|+|+.||-.|+..
T Consensus 2 ~~~C~~CGyvYd~~ 15 (52)
T 1yk4_A 2 KLSCKICGYIYDED 15 (52)
T ss_dssp EEEESSSSCEEETT
T ss_pred cEEeCCCCeEECCC
Confidence 58899999888754
No 485
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=65.56 E-value=6.8 Score=22.76 Aligned_cols=26 Identities=12% Similarity=0.287 Sum_probs=21.6
Q ss_pred hCCCcCHHHHHHHhCCChHHHHHHHH
Q psy5744 42 RNPCMKEDDICELLKFERKMLRARIS 67 (157)
Q Consensus 42 ~~~~i~dedLa~~l~i~~k~vRkiL~ 67 (157)
....+|-.+||+.+|++...+.++..
T Consensus 11 ~~~g~s~~~lA~~~gis~~~i~~~e~ 36 (66)
T 2xi8_A 11 EKKKISQSELAALLEVSRQTINGIEK 36 (66)
T ss_dssp HHTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 34568999999999999998888764
No 486
>2k9m_A RNA polymerase sigma factor RPON; core binding domain, transcription; NMR {Aquifex aeolicus}
Probab=65.24 E-value=13 Score=26.32 Aligned_cols=53 Identities=11% Similarity=0.117 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHH----hCCCcC--HHHHHHHhCCChHHHHHHHHHHh
Q psy5744 17 LKQLSRLVVRGFYSIEDSLIIDMLV----RNPCMK--EDDICELLKFERKMLRARISTLK 70 (157)
Q Consensus 17 ~~~Lv~~v~R~Fy~~e~ivIlD~L~----~~~~i~--dedLa~~l~i~~k~vRkiL~~L~ 70 (157)
-.+|...+. ...++....|..+|+ .+|+++ -++||..+|++..+|.++|..+.
T Consensus 6 ~e~L~~Ql~-~~~~~~~~~ia~~iI~~LD~~GYL~~~l~eia~~l~~~~~eve~vL~~iQ 64 (130)
T 2k9m_A 6 LEELQQNIK-LELEGKEQELALELLNYLNEKGFLSKSVEEISDVLRCSVEELEKVRQKVL 64 (130)
T ss_dssp HHHHHHHHH-HHCCSHHHHHHHHHTTSBCTTSSBSSCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHc-ccCCHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHcCCCHHHHHHHHHHHh
Confidence 345667777 777776554444444 568754 78999999999999999888665
No 487
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=65.00 E-value=26 Score=23.78 Aligned_cols=27 Identities=15% Similarity=0.140 Sum_probs=23.1
Q ss_pred CCCcCHHHHHHHhCCChHHHHHHHHHH
Q psy5744 43 NPCMKEDDICELLKFERKMLRARISTL 69 (157)
Q Consensus 43 ~~~i~dedLa~~l~i~~k~vRkiL~~L 69 (157)
-..+|-.+||+.||++.+.|++.+..-
T Consensus 122 ~~g~s~~EIA~~lgis~~tV~~~~~ra 148 (164)
T 3mzy_A 122 IRGYSYREIATILSKNLKSIDNTIQRI 148 (164)
T ss_dssp TTTCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 457899999999999999998877653
No 488
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=64.82 E-value=7.4 Score=25.90 Aligned_cols=37 Identities=19% Similarity=0.269 Sum_probs=30.8
Q ss_pred HHHHHHHhCCCcCHHHHHHHhCC----ChHHHHHHHHHHhh
Q psy5744 35 LIIDMLVRNPCMKEDDICELLKF----ERKMLRARISTLKN 71 (157)
Q Consensus 35 vIlD~L~~~~~i~dedLa~~l~i----~~k~vRkiL~~L~~ 71 (157)
.|+|.|+..+.+++++....... .....|++|..|..
T Consensus 25 ~vld~L~~~~vlt~~~~e~I~~~~~~t~~~~ar~Lld~L~~ 65 (97)
T 3ygs_P 25 QLWDVLLSRELFRPHMIEDIQRAGSGSRRDQARQLIIDLET 65 (97)
T ss_dssp TTHHHHHHTTSSCHHHHHHHHTSTTCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCCHHHHHHHHhccCCChHHHHHHHHHHHHH
Confidence 48999999999999999888864 46788999987764
No 489
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=64.64 E-value=2.3 Score=28.30 Aligned_cols=13 Identities=46% Similarity=1.002 Sum_probs=10.6
Q ss_pred CCeeecCCCCCcc
Q psy5744 127 RSSFKCPRCLKTF 139 (157)
Q Consensus 127 ~~~Y~Cp~C~~~Y 139 (157)
.-.|+||.||-.|
T Consensus 49 ~F~FkCP~CgEEF 61 (95)
T 2k5c_A 49 EFVFKCPVCGEEF 61 (95)
T ss_dssp HSEEECTTTCCEE
T ss_pred HHhhcCCCccHHH
Confidence 3479999998876
No 490
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=64.62 E-value=5.4 Score=26.11 Aligned_cols=18 Identities=22% Similarity=0.667 Sum_probs=10.5
Q ss_pred CCeeecCCCCCccchhhh
Q psy5744 127 RSSFKCPRCLKTFTDLEP 144 (157)
Q Consensus 127 ~~~Y~Cp~C~~~Ys~lda 144 (157)
...|.|+.|++.|+....
T Consensus 92 ~~~~~C~~C~~~f~~~~~ 109 (124)
T 2dlq_A 92 EMPYKCSSCSQQFMQKKD 109 (124)
T ss_dssp SCSEECSSSCCEESSHHH
T ss_pred CCCccCCCccchhCCHHH
Confidence 344666666666665443
No 491
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=64.61 E-value=5.2 Score=25.00 Aligned_cols=18 Identities=22% Similarity=0.552 Sum_probs=15.4
Q ss_pred CeeecCCCCCccchhhhh
Q psy5744 128 SSFKCPRCLKTFTDLEPC 145 (157)
Q Consensus 128 ~~Y~Cp~C~~~Ys~lda~ 145 (157)
..|.|+.|++.|+....+
T Consensus 64 ~~~~C~~C~~~f~~~~~L 81 (95)
T 2yt9_A 64 KPYICQSCGKGFSRPDHL 81 (95)
T ss_dssp SSBCCSSSCCCBSSHHHH
T ss_pred CceECCCccchhCCHHHH
Confidence 679999999999877665
No 492
>3iz6_V 40S ribosomal protein S25 (S25E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=64.58 E-value=2.9 Score=29.07 Aligned_cols=40 Identities=15% Similarity=0.210 Sum_probs=35.7
Q ss_pred HHHhCCCcCHHHHHHHhCCChHHHHHHHHHHhhCcceeee
Q psy5744 39 MLVRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 39 ~L~~~~~i~dedLa~~l~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
-+.....||--.|+++|+|+-.--|++|..|.+.|+|+..
T Consensus 54 EVpk~KlITpsvlseRlkI~gSLAR~aLreL~~kGlIk~V 93 (108)
T 3iz6_V 54 EVPKYKQITPSVLSERLRINGSLARQAIKDLESRGAIRVV 93 (108)
T ss_dssp HHHHHSSEEEHHHHHHHHTCCHHHHHHHHHHHHHHTSCEE
T ss_pred HccCCeEEeHHHHHhhhcccHHHHHHHHHHHHHCCCEEEE
Confidence 3344578999999999999999999999999999999876
No 493
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=64.46 E-value=13 Score=25.31 Aligned_cols=30 Identities=7% Similarity=0.033 Sum_probs=25.9
Q ss_pred CCCcCHHHHHHHhCCChHHHHHHHHHHhhC
Q psy5744 43 NPCMKEDDICELLKFERKMLRARISTLKND 72 (157)
Q Consensus 43 ~~~i~dedLa~~l~i~~k~vRkiL~~L~~d 72 (157)
...++-.|||..+|++.-.|-++|..-.+.
T Consensus 32 v~g~tQ~eIA~~lGiSR~~VsrlL~~Ar~~ 61 (101)
T 2w7n_A 32 VDGKPQATFATSLGLTRGAVSQAVHRVWAA 61 (101)
T ss_dssp TTCCCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 457899999999999999999999876543
No 494
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=64.17 E-value=6 Score=25.59 Aligned_cols=17 Identities=24% Similarity=0.468 Sum_probs=9.7
Q ss_pred CeeecCCCCCccchhhh
Q psy5744 128 SSFKCPRCLKTFTDLEP 144 (157)
Q Consensus 128 ~~Y~Cp~C~~~Ys~lda 144 (157)
..|.|+.|++.|.....
T Consensus 36 ~~~~C~~C~~~f~~~~~ 52 (110)
T 2csh_A 36 RPYGCGVCGKKFKMKHH 52 (110)
T ss_dssp CSEECTTTSCEESSSHH
T ss_pred cCccCCCCCcccCCHHH
Confidence 34666666666655443
No 495
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=63.48 E-value=9.5 Score=23.88 Aligned_cols=29 Identities=17% Similarity=0.188 Sum_probs=23.6
Q ss_pred HHHhCCCcCHHHHHHHhCCChHHHHHHHH
Q psy5744 39 MLVRNPCMKEDDICELLKFERKMLRARIS 67 (157)
Q Consensus 39 ~L~~~~~i~dedLa~~l~i~~k~vRkiL~ 67 (157)
.+.....+|-.+||+.+|++...|.++..
T Consensus 25 ~~r~~~glsq~elA~~~gis~~~is~~e~ 53 (83)
T 2a6c_A 25 EHLRNSGLTQFKAAELLGVTQPRVSDLMR 53 (83)
T ss_dssp HHHHTTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 33445678999999999999998888775
No 496
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=63.29 E-value=8 Score=25.22 Aligned_cols=38 Identities=11% Similarity=0.148 Sum_probs=30.0
Q ss_pred HHHHHHHHhCCCcCHHHHHHHh--CCChHHHHHHHHHHhh
Q psy5744 34 SLIIDMLVRNPCMKEDDICELL--KFERKMLRARISTLKN 71 (157)
Q Consensus 34 ivIlD~L~~~~~i~dedLa~~l--~i~~k~vRkiL~~L~~ 71 (157)
--|+|.|+.++++++++..... .-.....|++|..|..
T Consensus 25 ~~lld~L~~~~vlt~~~~e~I~~~~t~~~kar~Lld~l~~ 64 (94)
T 2p1h_A 25 SYIMDHMISDGFLTISEEEKVRNEPTQQQRAAMLIKMILK 64 (94)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHTSSSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCCCHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 3589999999999999876665 4566689999987743
No 497
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=63.15 E-value=3.3 Score=28.66 Aligned_cols=21 Identities=19% Similarity=0.382 Sum_probs=16.8
Q ss_pred HHhhcCCCCeeecCCCCCccc
Q psy5744 120 EERDATSRSSFKCPRCLKTFT 140 (157)
Q Consensus 120 ~~~~~~~~~~Y~Cp~C~~~Ys 140 (157)
+-.++....||+|+.||.+|.
T Consensus 91 rsade~mt~fy~C~~C~~~w~ 111 (113)
T 3h0g_I 91 RRGDTMMTLIYVCVHCGFAFE 111 (113)
T ss_dssp SSCCCCCCCEEEESSSCCCCC
T ss_pred ccCCCCCeeEEEcCCCCCEEe
Confidence 344677788999999999886
No 498
>2dk8_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, RNA_POL_RPC34 domain, RNA polymerase III C39 subunit, NPPSFA; NMR {Mus musculus} SCOP: a.4.5.85
Probab=62.93 E-value=10 Score=24.92 Aligned_cols=43 Identities=14% Similarity=0.115 Sum_probs=34.7
Q ss_pred HHHHHHhC-CCcCHHHHHHHh-CCChHHHHHHHHHHhhCcceeee
Q psy5744 36 IIDMLVRN-PCMKEDDICELL-KFERKMLRARISTLKNDKIIQTR 78 (157)
Q Consensus 36 IlD~L~~~-~~i~dedLa~~l-~i~~k~vRkiL~~L~~d~Lv~~~ 78 (157)
|++.+-.+ ..++|++|+..+ +++.++.-.++++|-..|-+.--
T Consensus 19 IL~l~~~~P~GItd~~L~~~~p~~~~~~r~~aIN~LL~~gkiel~ 63 (81)
T 2dk8_A 19 IIELCHQFPHGITDQVIQNEMPHIEAQQRAVAINRLLSMGQLDLL 63 (81)
T ss_dssp HHHHHHHCSSCEEHHHHHHHCTTSCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHhCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHcCCeEEE
Confidence 66665545 569999999999 56999999999999888877744
No 499
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}
Probab=62.79 E-value=4.6 Score=20.80 Aligned_cols=20 Identities=15% Similarity=0.358 Sum_probs=14.9
Q ss_pred CCCeeecC--CCCCccchhhhh
Q psy5744 126 SRSSFKCP--RCLKTFTDLEPC 145 (157)
Q Consensus 126 ~~~~Y~Cp--~C~~~Ys~lda~ 145 (157)
....|.|+ .|++.|+.-..+
T Consensus 5 ~~k~~~C~~~~C~k~f~~~~~L 26 (37)
T 1va1_A 5 KKKQHICHIQGCGKVYGKTSHL 26 (37)
T ss_dssp SCCCEECCSTTCCCEESCHHHH
T ss_pred CCCCCCCCCCCCCCccCCHHHH
Confidence 34579998 699999876543
No 500
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=62.79 E-value=8.4 Score=22.10 Aligned_cols=24 Identities=13% Similarity=0.163 Sum_probs=21.1
Q ss_pred CCcCHHHHHHHhCCChHHHHHHHH
Q psy5744 44 PCMKEDDICELLKFERKMLRARIS 67 (157)
Q Consensus 44 ~~i~dedLa~~l~i~~k~vRkiL~ 67 (157)
..++-.+||+.+|++...|++.+.
T Consensus 30 ~g~s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 30 MGYTVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHH
Confidence 346999999999999999998874
Done!