RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5744
         (157 letters)



>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 62

 Score = 43.6 bits (103), Expect = 2e-07
 Identities = 19/28 (67%), Positives = 24/28 (85%)

Query: 116 RMEMEERDATSRSSFKCPRCLKTFTDLE 143
           R+E +ERD+T+R+SFKCP C  TFTDLE
Sbjct: 1   RIETDERDSTNRASFKCPVCSSTFTDLE 28


>d1i1ga1 a.4.5.32 (A:2-61) LprA {Archaeon Pyrococcus furiosus
          [TaxId: 2261]}
          Length = 60

 Score = 28.1 bits (63), Expect = 0.11
 Identities = 10/44 (22%), Positives = 22/44 (50%)

Query: 33 DSLIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQ 76
          D +I+++L ++      +I + L      +R R+  L+   II+
Sbjct: 5  DKIILEILEKDARTPFTEIAKKLGISETAVRKRVKALEEKGIIE 48


>d2cfxa1 a.4.5.32 (A:1-63) Transcriptional regulator LrpC
          {Bacillus subtilis [TaxId: 1423]}
          Length = 63

 Score = 27.7 bits (62), Expect = 0.17
 Identities = 9/44 (20%), Positives = 21/44 (47%)

Query: 33 DSLIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQ 76
          D  II+ L ++  +   ++   +K     +  R+  L++  II+
Sbjct: 7  DLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIK 50


>d2cyya1 a.4.5.32 (A:5-64) Putative transcriptional regulator
          PH1519 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
          Length = 60

 Score = 27.3 bits (61), Expect = 0.18
 Identities = 9/44 (20%), Positives = 18/44 (40%)

Query: 33 DSLIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQ 76
          D  II +L  +      +I ++       +  RI  L+   +I+
Sbjct: 5  DKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRESGVIK 48


>d2cg4a1 a.4.5.32 (A:4-66) Regulatory protein AsnC {Escherichia
          coli [TaxId: 562]}
          Length = 63

 Score = 26.5 bits (59), Expect = 0.42
 Identities = 8/44 (18%), Positives = 18/44 (40%)

Query: 33 DSLIIDMLVRNPCMKEDDICELLKFERKMLRARISTLKNDKIIQ 76
          D  I++ L+ N      ++ +      + +  R+  +K   II 
Sbjct: 7  DRGILEALMGNARTAYAELAKQFGVSPETIHVRVEKMKQAGIIT 50


>d2i52a1 d.316.1.1 (A:1-120) Hypothetical protein PTO0218
           {Picrophilus torridus [TaxId: 82076]}
          Length = 120

 Score = 27.4 bits (61), Expect = 0.46
 Identities = 14/63 (22%), Positives = 22/63 (34%), Gaps = 6/63 (9%)

Query: 30  SIEDSL-----IIDMLVR-NPCMKEDDICELLKFERKMLRARISTLKNDKIIQTRLRMET 83
            IE S      + ++ +  N   +            KML A +    N K +   L  + 
Sbjct: 48  FIERSTMIQPFVENVRISINNVKRSSGTYSYSSLNEKMLHAEVLINYNGKKVLGVLNYDE 107

Query: 84  GLD 86
           GLD
Sbjct: 108 GLD 110


>d1r9da_ c.7.1.1 (A:) Glycerol dehydratase DhaB1 {Clostridium
           butyricum [TaxId: 1492]}
          Length = 786

 Score = 26.7 bits (59), Expect = 1.3
 Identities = 11/58 (18%), Positives = 20/58 (34%), Gaps = 7/58 (12%)

Query: 93  NYYFINYQTFVNIVKYKLDVMRKRMEMEERDATSRSSFKCPRCLKTFTDLEPCLLVLW 150
             +F  Y  + N+       +      E +DAT++ S+            +P L V  
Sbjct: 329 TKHFGGYPMYQNL-------IVGGQNSEGKDATNKVSYMALEAAVHVKLPQPSLSVRI 379


>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus
           norvegicus) [TaxId: 10116]}
          Length = 124

 Score = 25.5 bits (55), Expect = 2.3
 Identities = 5/37 (13%), Positives = 13/37 (35%)

Query: 109 KLDVMRKRMEMEERDATSRSSFKCPRCLKTFTDLEPC 145
           ++  +  R+E   ++       +C  C +    L   
Sbjct: 28  RIGRLVDRLETMRKNVAGDGVNRCILCGEQLGMLGSA 64


>d1ztpa1 d.86.1.2 (A:17-250) Basophilic leukemia expressed protein
           BLES03 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 234

 Score = 24.5 bits (53), Expect = 6.2
 Identities = 3/24 (12%), Positives = 8/24 (33%)

Query: 109 KLDVMRKRMEMEERDATSRSSFKC 132
           +L V+     +         ++K 
Sbjct: 166 RLGVLEADSAIRAAGIKCLLTYKP 189


>d1ldma2 d.162.1.1 (A:161-329) Lactate dehydrogenase {Dogfish
           (Squalus acanthias) [TaxId: 7797]}
          Length = 169

 Score = 24.0 bits (51), Expect = 9.1
 Identities = 11/50 (22%), Positives = 24/50 (48%), Gaps = 2/50 (4%)

Query: 24  VVRGFYSIEDSLIIDMLVRNPCMKEDDICE--LLKFERKMLRARISTLKN 71
           +V+ FY I+D++ + +          +I +  L   E + L+   +TL +
Sbjct: 113 MVKDFYGIKDNVFLSLPCVLNDHGISNIVKMKLKPNEEQQLQKSATTLWD 162


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.138    0.414 

Gapped
Lambda     K      H
   0.267   0.0690    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 561,214
Number of extensions: 24738
Number of successful extensions: 126
Number of sequences better than 10.0: 1
Number of HSP's gapped: 126
Number of HSP's successfully gapped: 23
Length of query: 157
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 79
Effective length of database: 1,336,656
Effective search space: 105595824
Effective search space used: 105595824
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (22.7 bits)