BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy5745
         (254 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2HJN|A Chain A, Structural And Functional Analysis Of Saccharomyces
           Cerevisiae Mob1
          Length = 236

 Score = 37.4 bits (85), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 47/207 (22%), Positives = 77/207 (37%), Gaps = 36/207 (17%)

Query: 65  DFNRWPD--EPF--EEMDGTLAVQQYIQQQIRKDPSNIDVI---LTPPDSQDEGVWKYEH 117
           DFN  P   +PF   +   T+   Q I+Q +     +  V+   +  P  +DE  W   H
Sbjct: 23  DFNYTPSHQKPFLQPQAGTTVTTHQDIKQIVEXTLGSEGVLNQAVKLPRGEDENEWLAVH 82

Query: 118 LRQFCMELNGLAVRLQYECHPETCTQMTATEQWIFLCAAHKA--PKECPAIDYTRHTLDG 175
              F  ++N L   +   C P+TC +  AT ++ +L A  K   P    A  Y       
Sbjct: 83  CVDFYNQINXLYGSITEFCSPQTCPRXIATNEYEYLWAFQKGQPPVSVSAPKYVECLXRW 142

Query: 176 AACLLNSNKYFPS-----------------------RIFSHAHFHHTAIFDQFEAETHL- 211
                +    FPS                       R+++H + HH     +   +T L 
Sbjct: 143 CQDQFDDESLFPSKVTGTFPEGFIQRVIQPILRRLFRVYAHIYCHHFNEILELNLQTVLN 202

Query: 212 --CRRFTVFVMKYNLMSKDNIIVPILE 236
              R F +F  ++ L+   +   P+LE
Sbjct: 203 TSFRHFCLFAQEFELLRPAD-FGPLLE 228


>pdb|1R3B|A Chain A, Solution Structure Of Xenopus Laevis Mob1
          Length = 202

 Score = 37.0 bits (84), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 34/160 (21%), Positives = 61/160 (38%), Gaps = 28/160 (17%)

Query: 96  SNIDVILTPPDSQDEGVWKYEHLRQFCMELNGLAVRLQYECHPETCTQMTATEQWIFLCA 155
            N+   +  P+ +D   W   +   F  ++N L   +   C   TC+ M+A  ++ +  A
Sbjct: 25  GNLRQAVMLPEGEDLNEWIAVNTVDFFNQINMLYGTITEFCTESTCSVMSAGPRYEYHWA 84

Query: 156 AH---KAPKECPAIDYTRHTLDGAACLLNSNKYFPS----------------------RI 190
                K P +C A  Y  + +      L+    FPS                      R+
Sbjct: 85  DGTNIKKPIKCSAPKYIDYLMTWVQDQLDDETLFPSKIGVPFPKNFMSVAKTILKRLFRV 144

Query: 191 FSHAHFHHTAIFDQFEAETHL---CRRFTVFVMKYNLMSK 227
           ++H +  H     Q + E HL    + F  FV ++NL+ +
Sbjct: 145 YAHIYHQHFDAVMQLQEEAHLNTSFKHFIFFVQEFNLIDR 184


>pdb|1PI1|A Chain A, Crystal Structure Of A Human Mob1 Protein; Toward
           Understanding Mob-Regulated Cell Cycle Pathways
          Length = 185

 Score = 34.3 bits (77), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 33/160 (20%), Positives = 60/160 (37%), Gaps = 28/160 (17%)

Query: 96  SNIDVILTPPDSQDEGVWKYEHLRQFCMELNGLAVRLQYECHPETCTQMTATEQWIFLCA 155
            N+   +  P+ +D   W   +   F  ++N L   +   C   +C  M+A  ++ +  A
Sbjct: 8   GNLRQAVMLPEGEDLNEWIAVNTVDFFNQINMLYGTITEFCTEASCPVMSAGPRYEYHWA 67

Query: 156 AH---KAPKECPAIDYTRHTLDGAACLLNSNKYFPS----------------------RI 190
                K P +C A  Y  + +      L+    FPS                      R+
Sbjct: 68  DGTNIKKPIKCSAPKYIDYLMTWVQDQLDDETLFPSKIGVPFPKNFMSVAKTILKRLFRV 127

Query: 191 FSHAHFHHTAIFDQFEAETHL---CRRFTVFVMKYNLMSK 227
           ++H +  H     Q + E HL    + F  FV ++NL+ +
Sbjct: 128 YAHIYHQHFDSVMQLQEEAHLNTSFKHFIFFVQEFNLIDR 167


>pdb|2LXF|A Chain A, Solution Nmr Structure Of A Potential Acylphosphatase From
           Giardia Lamblia, Seattle Structural Genomics Center For
           Infectious Disease Target Gilaa.01396.A
          Length = 121

 Score = 28.5 bits (62), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 5/47 (10%)

Query: 209 THLCRRFT-----VFVMKYNLMSKDNIIVPILEENNENSTVSGTNQG 250
           T LC R T     VF  KY     D + +     NNE+ +VSG  QG
Sbjct: 34  TTLCYRVTGKVQGVFFRKYTKKEADALSLVGYVTNNEDGSVSGVVQG 80


>pdb|3THW|B Chain B, Human Mutsbeta Complexed With An Idl Of 4 Bases (Loop4)
           And Adp
 pdb|3THX|B Chain B, Human Mutsbeta Complexed With An Idl Of 3 Bases (Loop3)
           And Adp
 pdb|3THY|B Chain B, Human Mutsbeta Complexed With An Idl Of 2 Bases (Loop2)
           And Adp
 pdb|3THZ|B Chain B, Human Mutsbeta Complexed With An Idl Of 6 Bases (Loop6)
           And Adp
          Length = 918

 Score = 28.5 bits (62), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 15/44 (34%), Positives = 21/44 (47%)

Query: 29  IFLCAAHKAPKECPAIDYTRHMLPYHIKTHEVHLFQDFNRWPDE 72
           I   AAHK+ +    I+  R  L Y  K   +H  QD  +W +E
Sbjct: 866 ILKKAAHKSKELEGLINTKRKRLKYFAKLWTMHNAQDLQKWTEE 909


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.134    0.433 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,411,578
Number of Sequences: 62578
Number of extensions: 346391
Number of successful extensions: 505
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 500
Number of HSP's gapped (non-prelim): 9
length of query: 254
length of database: 14,973,337
effective HSP length: 97
effective length of query: 157
effective length of database: 8,903,271
effective search space: 1397813547
effective search space used: 1397813547
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.9 bits)