Query psy5745
Match_columns 254
No_of_seqs 185 out of 479
Neff 5.7
Searched_HMMs 46136
Date Fri Aug 16 16:56:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5745.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5745hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0440|consensus 100.0 2.7E-60 5.9E-65 416.4 8.8 174 69-244 42-241 (243)
2 PF03637 Mob1_phocein: Mob1/ph 100.0 4.1E-58 9E-63 394.2 6.8 149 84-235 1-175 (175)
3 KOG1903|consensus 100.0 1.4E-56 3.1E-61 377.2 11.4 172 69-242 17-216 (217)
4 KOG1852|consensus 100.0 7.5E-42 1.6E-46 287.8 1.7 180 57-236 13-212 (223)
5 PF03637 Mob1_phocein: Mob1/ph 99.9 3.5E-29 7.5E-34 215.2 3.1 123 2-128 39-166 (175)
6 KOG0440|consensus 99.9 5.9E-28 1.3E-32 212.5 2.5 123 2-128 96-223 (243)
7 KOG1903|consensus 99.9 3.8E-26 8.2E-31 193.0 4.8 123 2-128 71-200 (217)
8 KOG1852|consensus 99.8 1.5E-20 3.3E-25 158.8 0.6 68 1-73 79-146 (223)
9 PF12431 CitT: Transcriptional 34.5 46 0.00099 20.6 2.5 27 84-110 3-29 (30)
10 PF11128 Nucleocap_ssRNA: Plan 24.5 79 0.0017 27.4 3.0 56 162-223 16-75 (180)
11 KOG2321|consensus 20.1 53 0.0012 33.9 1.3 28 8-35 43-70 (703)
No 1
>KOG0440|consensus
Probab=100.00 E-value=2.7e-60 Score=416.42 Aligned_cols=174 Identities=18% Similarity=0.330 Sum_probs=165.8
Q ss_pred CCCCCCCCCCchhHHHHHHHHHhhcCCCchhhhcCCCCCCCcCceeeeehHHHHhhhhhhhhhcccccccccccccCCCC
Q psy5745 69 WPDEPFEEMDGTLAVQQYIQQQIRKDPSNIDVILTPPDSQDEGVWKYEHLRQFCMELNGLAVRLQYECHPETCTQMTATE 148 (254)
Q Consensus 69 ~P~k~f~e~~~~f~lqq~iq~~Lr~~~~~l~~iV~lP~g~d~neWia~h~~~f~~~in~l~~~v~e~Ct~~tCP~M~a~~ 148 (254)
.+++..++.+.+.++.++...++++. |+|+++|+||+|+|+|||||+|+++||++||+|||+|+|+||+++||.|+||+
T Consensus 42 ~~k~~~~~~s~~~~~~~~~e~~l~s~-g~l~~aV~LP~G~D~nEWlA~nt~~fF~qvN~lYGtitEfCT~~sCp~Msag~ 120 (243)
T KOG0440|consen 42 RKKEASASLSVRPQAKYLAEATLGSS-GNLREAVKLPEGEDLNEWLAVNTLDFFNQVNLLYGTITEFCTQQSCPHMSAGP 120 (243)
T ss_pred cccccCcccCccHHHHHHHHHhhccc-ccHHHHhcCCCCCchhhHHHHhHHHHHHHHHHHHHHHHHHcCcccCccccCCC
Confidence 35556777889999999999999985 79999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEccC-CCCcccChHHHHHHHHHHHHHhhCCCCCCCcc----------------------eeEEeechhhHHHHhc
Q psy5745 149 QWIFLCAAH-KAPKECPAIDYTRHTLDGAACLLNSNKYFPSR----------------------IFSHAHFHHTAIFDQF 205 (254)
Q Consensus 149 ~~~ylw~d~-~kp~~~sA~~Yi~~~l~w~~~~l~d~~iFPt~----------------------VyAHiY~~H~~~~~~l 205 (254)
+++|+|+|. +||+++|||||||++|+||+++++||+||||+ ||||||++||+.|++|
T Consensus 121 ~yeY~W~D~~~kp~~~sApqYId~lmtw~q~~~dde~iFPtK~g~~FP~nF~~~vk~Ilr~lFrvyAHiY~~Hf~~i~~L 200 (243)
T KOG0440|consen 121 NYEYLWADEKGKPVRVSAPQYIDYLMTWCQNQLDDENIFPTKYGNPFPGNFESVVKKILRRLFRVYAHIYHSHFDEIVAL 200 (243)
T ss_pred cceeeeecccCCccccCchHHHHHHHHHHHHhccccccCccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999997 69999999999999999999999999999999 9999999999999999
Q ss_pred chhhHHh---HHHHHHHHhhcCCCCCCccccchHhhhhcccc
Q psy5745 206 EAETHLC---RRFTVFVMKYNLMSKDNIIVPILEENNENSTV 244 (254)
Q Consensus 206 ~~e~hln---~hF~~F~~ef~Li~~kel~~Pl~~l~~~~~~~ 244 (254)
++++||| +||+.|++||+|||+||+ .||++|++.+...
T Consensus 201 ~l~ahlNt~F~Hf~~f~~eF~LiD~kE~-aPl~~Li~~l~~~ 241 (243)
T KOG0440|consen 201 QLEAHLNTSFKHFILFAREFQLLDKKET-APLLELIESLLSQ 241 (243)
T ss_pred hHHHHHHHHHHHHHHHHHHHhccCHHhh-hhHHHHHHHHhcc
Confidence 9999999 999999999999999999 9999999987643
No 2
>PF03637 Mob1_phocein: Mob1/phocein family; InterPro: IPR005301 Mob1 is an essential Saccharomyces cerevisiae (Baker's yeast) protein, identified from a two-hybrid screen, that binds Mps1p, a protein kinase essential for spindle pole body duplication and mitotic checkpoint regulation. Mob1 contains no known structural motifs; however MOB1 is a member of a conserved gene family and shares sequence similarity with a nonessential yeast gene, MOB2. Mob1 is a phosphoprotein in vivo and a substrate for the Mps1p kinase in vitro. Conditional alleles of MOB1 cause a late nuclear division arrest at restrictive temperature []. This family also includes phocein Q9QYW3 from SWISSPROT, a rat protein that by yeast two hybrid interacts with striatin [].; PDB: 2HJN_A 1PI1_A 1R3B_A.
Probab=100.00 E-value=4.1e-58 Score=394.23 Aligned_cols=149 Identities=34% Similarity=0.641 Sum_probs=133.9
Q ss_pred HHHHHHHhhcCCCchhhhcCCCCCCCcCceeeeehHHHHhhhhhhhhhcccccccccccccCCCCceEEEEccC-CCCcc
Q psy5745 84 QQYIQQQIRKDPSNIDVILTPPDSQDEGVWKYEHLRQFCMELNGLAVRLQYECHPETCTQMTATEQWIFLCAAH-KAPKE 162 (254)
Q Consensus 84 qq~iq~~Lr~~~~~l~~iV~lP~g~d~neWia~h~~~f~~~in~l~~~v~e~Ct~~tCP~M~a~~~~~ylw~d~-~kp~~ 162 (254)
|++++++|++ |+++++|++|+|+|+|||+|+|+++||+++|++||+|+|+||++|||+|+||++|+|+|+|+ ++|++
T Consensus 1 ~~~~~~~l~~--~~l~~~V~lP~g~d~~eWla~~~~~f~~~in~l~~~v~e~Ct~~tCP~Msag~~~~Ylw~d~~~kp~~ 78 (175)
T PF03637_consen 1 QQYVQATLGK--GNLRTLVKLPKGVDENEWLAVHTVDFFNEINLLYGVVSEFCTPETCPTMSAGPNWEYLWADHKKKPVK 78 (175)
T ss_dssp HHHHHHHCCG--G-HHHHCS-STT--HHHHHHHHHHHHHHHHHHHHHHHGGGS-TTTTSSEESSTTCEE-BSSSTTS-BS
T ss_pred CHHHHHHHhc--CCHHHHhcCcCCCChhhHHHHhhHHHHHHHHHHHhhccCcCCcccCcCccCCccceeeeeccCCCCcc
Confidence 6899999999 69999999999999999999999999999999999999999999999999999999999997 58999
Q ss_pred cChHHHHHHHHHHHHHhhCCCCCCCcc----------------------eeEEeechhhHHHHhcchhhHHh---HHHHH
Q psy5745 163 CPAIDYTRHTLDGAACLLNSNKYFPSR----------------------IFSHAHFHHTAIFDQFEAETHLC---RRFTV 217 (254)
Q Consensus 163 ~sA~~Yi~~~l~w~~~~l~d~~iFPt~----------------------VyAHiY~~H~~~~~~l~~e~hln---~hF~~ 217 (254)
||||+||+++|+|++++|+|+++|||+ ||||||++||+.|.++|+++||| |||++
T Consensus 79 ~~A~~Yi~~~l~w~~~~l~d~~iFPt~~~~~fp~~f~~~v~~I~rrLfRvyaHiY~~H~~~~~~l~~~~hln~~F~hF~~ 158 (175)
T PF03637_consen 79 CSAPQYIDHLLDWIQSQLNDEKIFPTKPGVPFPKNFKKTVKKIFRRLFRVYAHIYHHHFEQFVELELEAHLNTCFKHFVL 158 (175)
T ss_dssp --HHHHHHHHHHHHHHHHTSTTTSSSSTTS-TTTTHHHHHHHHHHHHHHHHHHHHHHCHHHHHHTT-HHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHccCcccCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 999999999999999999999999998 99999999999999999999999 99999
Q ss_pred HHHhhcCCCCCCccccch
Q psy5745 218 FVMKYNLMSKDNIIVPIL 235 (254)
Q Consensus 218 F~~ef~Li~~kel~~Pl~ 235 (254)
|++||+||++||+ +||+
T Consensus 159 f~~eF~Li~~~el-~pL~ 175 (175)
T PF03637_consen 159 FAREFDLIDEKEL-EPLQ 175 (175)
T ss_dssp HHHHHT-S-GGGG-GGGH
T ss_pred HHHHhCCCCHHHh-cccC
Confidence 9999999999999 9986
No 3
>KOG1903|consensus
Probab=100.00 E-value=1.4e-56 Score=377.21 Aligned_cols=172 Identities=19% Similarity=0.362 Sum_probs=168.0
Q ss_pred CCCCCCCCCCchhHHHHHHHHHhhcCCCchhhhcCCCCCCCcCceeeeehHHHHhhhhhhhhhcccccccccccccCCCC
Q psy5745 69 WPDEPFEEMDGTLAVQQYIQQQIRKDPSNIDVILTPPDSQDEGVWKYEHLRQFCMELNGLAVRLQYECHPETCTQMTATE 148 (254)
Q Consensus 69 ~P~k~f~e~~~~f~lqq~iq~~Lr~~~~~l~~iV~lP~g~d~neWia~h~~~f~~~in~l~~~v~e~Ct~~tCP~M~a~~ 148 (254)
+|+++|++|+.+|.+++-.|+.|.++ -|++.+|+||+|+++|+|+|+|++||||.||++||+++|+||+.|||+|++|+
T Consensus 17 RPkkkF~~GT~Rf~LhK~AqAsL~sG-~dLr~aV~LPpgEn~nDW~AVHvVDFFNRiNLiYGTise~Cte~sCP~MsGG~ 95 (217)
T KOG1903|consen 17 RPKKKFEPGTQRFELHKKAQASLNSG-LDLRSAVRLPPGENLNDWLAVHVVDFFNRINLIYGTISEFCTETSCPVMSGGP 95 (217)
T ss_pred CCCCCCCCCceeeehHHHHHHHHhcC-cchHHhccCCCCCCccceeeeehhhhhhhhHhhhhhHhhhccccCCCcccCCC
Confidence 79999999999999999999999997 59999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEccC---CCCcccChHHHHHHHHHHHHHhhCCCCCCCcc----------------------eeEEeechhhHHHH
Q psy5745 149 QWIFLCAAH---KAPKECPAIDYTRHTLDGAACLLNSNKYFPSR----------------------IFSHAHFHHTAIFD 203 (254)
Q Consensus 149 ~~~ylw~d~---~kp~~~sA~~Yi~~~l~w~~~~l~d~~iFPt~----------------------VyAHiY~~H~~~~~ 203 (254)
+++|+|+|+ +||+.+|||+||+++||||+.+||||.+||+. ||.|+|.|||+.+.
T Consensus 96 rYEY~WqD~~~ykkPt~L~Ap~Ym~lLMDWIE~~INnE~vFPt~~~vpFPKnF~qi~~KILtRLFRVFVHVYIHHFDri~ 175 (217)
T KOG1903|consen 96 RYEYRWQDERKYKKPTALSAPRYMALLMDWIEVQINNEEVFPTSVGVPFPKNFLQICKKILTRLFRVFVHVYIHHFDRIL 175 (217)
T ss_pred cceeEecccccccCCccCCcHHHHHHHHHHHHHhccccccccccCCCCCcHhHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Confidence 999999995 89999999999999999999999999999988 99999999999999
Q ss_pred hcchhhHHh---HHHHHHHHhhcCCCCCCccccchHhhhhcc
Q psy5745 204 QFEAETHLC---RRFTVFVMKYNLMSKDNIIVPILEENNENS 242 (254)
Q Consensus 204 ~l~~e~hln---~hF~~F~~ef~Li~~kel~~Pl~~l~~~~~ 242 (254)
++|+|+|+| |||++|++||+|||.||| +||+++.++++
T Consensus 176 ~mGaE~HvNtcYKHFYyFv~Ef~li~~kEL-EpLkeMT~R~c 216 (217)
T KOG1903|consen 176 SMGAEAHVNTCYKHFYYFVTEFGLIDTKEL-EPLKEMTERIC 216 (217)
T ss_pred HhccHHHHHHHHHHHHHHhhhccccchhhc-chHHHHHHHhc
Confidence 999999999 999999999999999999 99999998875
No 4
>KOG1852|consensus
Probab=100.00 E-value=7.5e-42 Score=287.76 Aligned_cols=180 Identities=81% Similarity=1.331 Sum_probs=174.9
Q ss_pred hhcccccccccCCCCCCCCCCCchhHHHHHHHHHhhcCCCchhhhcCCCCCCCcCceeeeehHHHHhhhhhhhhhccccc
Q psy5745 57 THEVHLFQDFNRWPDEPFEEMDGTLAVQQYIQQQIRKDPSNIDVILTPPDSQDEGVWKYEHLRQFCMELNGLAVRLQYEC 136 (254)
Q Consensus 57 ~~~~~~~eif~~~P~k~f~e~~~~f~lqq~iq~~Lr~~~~~l~~iV~lP~g~d~neWia~h~~~f~~~in~l~~~v~e~C 136 (254)
..++++.++|++||..+|.++++...+|+||++.++++|+|++.|..+|+++|+++|.|+|+++|+.++|.|...++..|
T Consensus 13 nrpgtk~~df~nwpde~feemdstlavqqyiqq~ikadpsnv~~iltppe~qdegvwkyehlrqfc~elnglav~lq~ec 92 (223)
T KOG1852|consen 13 NRPGTKAQDFYNWPDESFEEMDSTLAVQQYIQQNIKADPSNVDKILTPPEGQDEGVWKYEHLRQFCLELNGLAVKLQSEC 92 (223)
T ss_pred cCCCcchhhhccCCcchHHHHHhHHHHHHHHHHHhccCchhHHHhcCCCcccccchhhHHHHHHHHHHhhhHHHHHhccc
Confidence 34478899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCCCceEEEEccCCCCcccChHHHHHHHHHHHHHhhCCCCCCCcc--------------------eeEEeec
Q psy5745 137 HPETCTQMTATEQWIFLCAAHKAPKECPAIDYTRHTLDGAACLLNSNKYFPSR--------------------IFSHAHF 196 (254)
Q Consensus 137 t~~tCP~M~a~~~~~ylw~d~~kp~~~sA~~Yi~~~l~w~~~~l~d~~iFPt~--------------------VyAHiY~ 196 (254)
.++||..|+|+++|.|||++||.|.+|||++|..|++|.+..+|++.++|||| ||+|+||
T Consensus 93 ~p~tctqmtateqwiflcaahktpkecpaidytrhtldgaacllnsnkyfpsrvsikessv~klgsvcrrvyrifsha~f 172 (223)
T KOG1852|consen 93 HPDTCTQMTATEQWIFLCAAHKTPKECPAIDYTRHTLDGAACLLNSNKYFPSRVSIKESSVAKLGSVCRRVYRIFSHAYF 172 (223)
T ss_pred CchHhhhhhhHhHHHhhhhhcCCcccCCcccchhhccccccccccCCccCCcccchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999 9999999
Q ss_pred hhhHHHHhcchhhHHhHHHHHHHHhhcCCCCCCccccchH
Q psy5745 197 HHTAIFDQFEAETHLCRRFTVFVMKYNLMSKDNIIVPILE 236 (254)
Q Consensus 197 ~H~~~~~~l~~e~hln~hF~~F~~ef~Li~~kel~~Pl~~ 236 (254)
||+..|.+++.|++|+++|..|+..|+||+.+.||.|+..
T Consensus 173 hhr~ifdefe~etylc~rft~~v~kynlms~e~livpi~~ 212 (223)
T KOG1852|consen 173 HHRKIFDEFENETYLCHRFTKFVSKYNLMSKENLIVPILP 212 (223)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHhhhhccccceeeecCc
Confidence 9999999999999999999999999999999999888764
No 5
>PF03637 Mob1_phocein: Mob1/phocein family; InterPro: IPR005301 Mob1 is an essential Saccharomyces cerevisiae (Baker's yeast) protein, identified from a two-hybrid screen, that binds Mps1p, a protein kinase essential for spindle pole body duplication and mitotic checkpoint regulation. Mob1 contains no known structural motifs; however MOB1 is a member of a conserved gene family and shares sequence similarity with a nonessential yeast gene, MOB2. Mob1 is a phosphoprotein in vivo and a substrate for the Mps1p kinase in vitro. Conditional alleles of MOB1 cause a late nuclear division arrest at restrictive temperature []. This family also includes phocein Q9QYW3 from SWISSPROT, a rat protein that by yeast two hybrid interacts with striatin [].; PDB: 2HJN_A 1PI1_A 1R3B_A.
Probab=99.95 E-value=3.5e-29 Score=215.17 Aligned_cols=123 Identities=24% Similarity=0.391 Sum_probs=103.3
Q ss_pred cccchhhhhhcccCcccCccccccCceEEeeccCC-CCCCCCchHHHHhhhHhhhhhhcccccccccCCCCCCCCCCCch
Q psy5745 2 ELNGLAVRLQYECHPETCTQMTATEQWIFLCAAHK-APKECPAIDYTRHMLPYHIKTHEVHLFQDFNRWPDEPFEEMDGT 80 (254)
Q Consensus 2 ~~n~l~~~~~~~C~~~tcp~M~a~~~~~yl~a~~~-~p~~~~a~~y~~~~~~w~~~~~~~~~~eif~~~P~k~f~e~~~~ 80 (254)
+||+||++++++||++|||.|+||++|+|||++++ +|++||||+||+++|+|++++|+ |+++||..+++++|+ +..
T Consensus 39 ~in~l~~~v~e~Ct~~tCP~Msag~~~~Ylw~d~~~kp~~~~A~~Yi~~~l~w~~~~l~--d~~iFPt~~~~~fp~-~f~ 115 (175)
T PF03637_consen 39 EINLLYGVVSEFCTPETCPTMSAGPNWEYLWADHKKKPVKCSAPQYIDHLLDWIQSQLN--DEKIFPTKPGVPFPK-NFK 115 (175)
T ss_dssp HHHHHHHHHGGGS-TTTTSSEESSTTCEE-BSSSTTS-BS--HHHHHHHHHHHHHHHHT--STTTSSSSTTS-TTT-THH
T ss_pred HHHHHHhhccCcCCcccCcCccCCccceeeeeccCCCCcccCHHHHHHHHHHHHHHHcc--CcccCCCccccchhH-HHH
Confidence 68999999999999999999999999999999875 99999999999999999999965 999997777777777 555
Q ss_pred hHHHHHHHHHhhcC----CCchhhhcCCCCCCCcCceeeeehHHHHhhhhhh
Q psy5745 81 LAVQQYIQQQIRKD----PSNIDVILTPPDSQDEGVWKYEHLRQFCMELNGL 128 (254)
Q Consensus 81 f~lqq~iq~~Lr~~----~~~l~~iV~lP~g~d~neWia~h~~~f~~~in~l 128 (254)
..++.++++++|.+ .++++.++.+-...++|. .+.|++.|.++.+++
T Consensus 116 ~~v~~I~rrLfRvyaHiY~~H~~~~~~l~~~~hln~-~F~hF~~f~~eF~Li 166 (175)
T PF03637_consen 116 KTVKKIFRRLFRVYAHIYHHHFEQFVELELEAHLNT-CFKHFVLFAREFDLI 166 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHHTT-HHHHHH-HHHHHHHHHHHHT-S
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH-HHHHHHHHHHHhCCC
Confidence 57899999999874 368899999999999999 799999999999987
No 6
>KOG0440|consensus
Probab=99.94 E-value=5.9e-28 Score=212.51 Aligned_cols=123 Identities=19% Similarity=0.259 Sum_probs=106.4
Q ss_pred cccchhhhhhcccCcccCccccccCceEEeeccC-CCCCCCCchHHHHhhhHhhhhhhcccccccccCCCCCCCCCCCch
Q psy5745 2 ELNGLAVRLQYECHPETCTQMTATEQWIFLCAAH-KAPKECPAIDYTRHMLPYHIKTHEVHLFQDFNRWPDEPFEEMDGT 80 (254)
Q Consensus 2 ~~n~l~~~~~~~C~~~tcp~M~a~~~~~yl~a~~-~~p~~~~a~~y~~~~~~w~~~~~~~~~~eif~~~P~k~f~e~~~~ 80 (254)
+||+|||+|+||||++|||.|+||++++|+|++. +||++||||+||+.+|+|+|+++ ||+++||.=.+.+||+ +..
T Consensus 96 qvN~lYGtitEfCT~~sCp~Msag~~yeY~W~D~~~kp~~~sApqYId~lmtw~q~~~--dde~iFPtK~g~~FP~-nF~ 172 (243)
T KOG0440|consen 96 QVNLLYGTITEFCTQQSCPHMSAGPNYEYLWADEKGKPVRVSAPQYIDYLMTWCQNQL--DDENIFPTKYGNPFPG-NFE 172 (243)
T ss_pred HHHHHHHHHHHHcCcccCccccCCCcceeeeecccCCccccCchHHHHHHHHHHHHhc--cccccCccccCCCCCc-hHH
Confidence 7999999999999999999999999999999886 69999999999999999999995 5999984444455665 333
Q ss_pred hHHHHHHHHHhhcC----CCchhhhcCCCCCCCcCceeeeehHHHHhhhhhh
Q psy5745 81 LAVQQYIQQQIRKD----PSNIDVILTPPDSQDEGVWKYEHLRQFCMELNGL 128 (254)
Q Consensus 81 f~lqq~iq~~Lr~~----~~~l~~iV~lP~g~d~neWia~h~~~f~~~in~l 128 (254)
-.+++++++++|.+ +++++.||.|-...++|. ...|++.|-++++++
T Consensus 173 ~~vk~Ilr~lFrvyAHiY~~Hf~~i~~L~l~ahlNt-~F~Hf~~f~~eF~Li 223 (243)
T KOG0440|consen 173 SVVKKILRRLFRVYAHIYHSHFDEIVALQLEAHLNT-SFKHFILFAREFQLL 223 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHhcc
Confidence 46677777777763 468999999999999999 699999999999986
No 7
>KOG1903|consensus
Probab=99.92 E-value=3.8e-26 Score=193.04 Aligned_cols=123 Identities=15% Similarity=0.207 Sum_probs=110.6
Q ss_pred cccchhhhhhcccCcccCccccccCceEEeeccC---CCCCCCCchHHHHhhhHhhhhhhcccccccccCCCCCCCCCCC
Q psy5745 2 ELNGLAVRLQYECHPETCTQMTATEQWIFLCAAH---KAPKECPAIDYTRHMLPYHIKTHEVHLFQDFNRWPDEPFEEMD 78 (254)
Q Consensus 2 ~~n~l~~~~~~~C~~~tcp~M~a~~~~~yl~a~~---~~p~~~~a~~y~~~~~~w~~~~~~~~~~eif~~~P~k~f~e~~ 78 (254)
.||++||++.|+||.+|||.|+.|+.|+|+|++. |||+.+|||.||.+||||++.+|+ |+++|+..-++|||+ +
T Consensus 71 RiNLiYGTise~Cte~sCP~MsGG~rYEY~WqD~~~ykkPt~L~Ap~Ym~lLMDWIE~~IN--nE~vFPt~~~vpFPK-n 147 (217)
T KOG1903|consen 71 RINLIYGTISEFCTETSCPVMSGGPRYEYRWQDERKYKKPTALSAPRYMALLMDWIEVQIN--NEEVFPTSVGVPFPK-N 147 (217)
T ss_pred hhHhhhhhHhhhccccCCCcccCCCcceeEecccccccCCccCCcHHHHHHHHHHHHHhcc--ccccccccCCCCCcH-h
Confidence 5899999999999999999999999999999875 999999999999999999999976 999987666788888 5
Q ss_pred chhHHHHHHHHHhhc----CCCchhhhcCCCCCCCcCceeeeehHHHHhhhhhh
Q psy5745 79 GTLAVQQYIQQQIRK----DPSNIDVILTPPDSQDEGVWKYEHLRQFCMELNGL 128 (254)
Q Consensus 79 ~~f~lqq~iq~~Lr~----~~~~l~~iV~lP~g~d~neWia~h~~~f~~~in~l 128 (254)
..-.+++++.+++|. |-+++++|+.+....+.|. +|.|+.-|..+++++
T Consensus 148 F~qi~~KILtRLFRVFVHVYIHHFDri~~mGaE~HvNt-cYKHFYyFv~Ef~li 200 (217)
T KOG1903|consen 148 FLQICKKILTRLFRVFVHVYIHHFDRILSMGAEAHVNT-CYKHFYYFVTEFGLI 200 (217)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHHHHHhccHHHHHH-HHHHHHHHhhhcccc
Confidence 555777788888775 4578999999999999999 799999999998876
No 8
>KOG1852|consensus
Probab=99.79 E-value=1.5e-20 Score=158.84 Aligned_cols=68 Identities=69% Similarity=1.110 Sum_probs=63.0
Q ss_pred CcccchhhhhhcccCcccCccccccCceEEeeccCCCCCCCCchHHHHhhhHhhhhhhcccccccccCCCCCC
Q psy5745 1 MELNGLAVRLQYECHPETCTQMTATEQWIFLCAAHKAPKECPAIDYTRHMLPYHIKTHEVHLFQDFNRWPDEP 73 (254)
Q Consensus 1 ~~~n~l~~~~~~~C~~~tcp~M~a~~~~~yl~a~~~~p~~~~a~~y~~~~~~w~~~~~~~~~~eif~~~P~k~ 73 (254)
+|+|+|++.+|.+|.|+||.+|+||++|+||||+||+|++||||||.+||+|.+...|+ .++-| |++.
T Consensus 79 ~elnglav~lq~ec~p~tctqmtateqwiflcaahktpkecpaidytrhtldgaaclln--snkyf---psrv 146 (223)
T KOG1852|consen 79 LELNGLAVKLQSECHPDTCTQMTATEQWIFLCAAHKTPKECPAIDYTRHTLDGAACLLN--SNKYF---PSRV 146 (223)
T ss_pred HHhhhHHHHHhcccCchHhhhhhhHhHHHhhhhhcCCcccCCcccchhhcccccccccc--CCccC---Cccc
Confidence 58999999999999999999999999999999999999999999999999999999986 56665 6654
No 9
>PF12431 CitT: Transcriptional regulator
Probab=34.47 E-value=46 Score=20.55 Aligned_cols=27 Identities=15% Similarity=0.134 Sum_probs=16.2
Q ss_pred HHHHHHHhhcCCCchhhhcCCCCCCCc
Q psy5745 84 QQYIQQQIRKDPSNIDVILTPPDSQDE 110 (254)
Q Consensus 84 qq~iq~~Lr~~~~~l~~iV~lP~g~d~ 110 (254)
|..+.+++......-...-.||+|+|.
T Consensus 3 Q~~VD~lf~~~~~~~~~~~~LPKGID~ 29 (30)
T PF12431_consen 3 QSDVDALFNSQAKEESPAERLPKGIDE 29 (30)
T ss_pred HHHHHHHHCcccCCCCCccCCCCCccc
Confidence 556666776642222222679999985
No 10
>PF11128 Nucleocap_ssRNA: Plant viral coat protein nucleocapsid; InterPro: IPR021310 This family of nucleocapsid proteins is from ssRNA negative-strand viruses of plant origin.
Probab=24.46 E-value=79 Score=27.40 Aligned_cols=56 Identities=11% Similarity=0.201 Sum_probs=36.4
Q ss_pred ccChHHHHHHHHHHHHHhhCCCCCCCcceeEEeechhh--HHHHhcchhhHHh--HHHHHHHHhhc
Q psy5745 162 ECPAIDYTRHTLDGAACLLNSNKYFPSRIFSHAHFHHT--AIFDQFEAETHLC--RRFTVFVMKYN 223 (254)
Q Consensus 162 ~~sA~~Yi~~~l~w~~~~l~d~~iFPt~VyAHiY~~H~--~~~~~l~~e~hln--~hF~~F~~ef~ 223 (254)
.+++.+-.+++- -.|++.||++||--|=.-|. ++=..+.+.--=| -|+..||..|+
T Consensus 16 d~~~~~lce~lS------sAdps~FPa~VFlkI~lDnlpseV~srcKm~iAGNkaiRYa~fA~~F~ 75 (180)
T PF11128_consen 16 DVSLSQLCEELS------SADPSKFPASVFLKIDLDNLPSEVSSRCKMSIAGNKAIRYAGFAQKFQ 75 (180)
T ss_pred CccHHHHHHHhc------cCCcccCchheeEecccccccHHHHhhhhhhhcccHHHHHHHHHHHhh
Confidence 344555444432 36899999999998876665 3333333333333 79999999999
No 11
>KOG2321|consensus
Probab=20.13 E-value=53 Score=33.85 Aligned_cols=28 Identities=18% Similarity=0.127 Sum_probs=25.6
Q ss_pred hhhhcccCcccCccccccCceEEeeccC
Q psy5745 8 VRLQYECHPETCTQMTATEQWIFLCAAH 35 (254)
Q Consensus 8 ~~~~~~C~~~tcp~M~a~~~~~yl~a~~ 35 (254)
.-||+|=-|+.|..|+.+++-+|+||.+
T Consensus 43 eLiQdfe~p~ast~ik~s~DGqY~lAtG 70 (703)
T KOG2321|consen 43 ELIQDFEMPTASTRIKVSPDGQYLLATG 70 (703)
T ss_pred HHHHhcCCccccceeEecCCCcEEEEec
Confidence 4578899999999999999999999987
Done!