Query psy5745
Match_columns 254
No_of_seqs 185 out of 479
Neff 5.7
Searched_HMMs 29240
Date Fri Aug 16 16:56:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5745.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5745hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hjn_A MPS1 binder 1, maintena 100.0 3.4E-61 1.2E-65 427.8 8.9 168 74-243 40-235 (236)
2 1pi1_A MOB1A; mitotic EXIT net 100.0 4.8E-60 1.6E-64 408.0 6.7 153 88-243 2-182 (185)
3 1pi1_A MOB1A; mitotic EXIT net 100.0 1.6E-31 5.4E-36 230.2 3.4 124 2-129 36-166 (185)
4 2hjn_A MPS1 binder 1, maintena 100.0 2.8E-30 9.5E-35 229.4 3.7 123 2-128 89-218 (236)
5 3gs2_B Chromobox protein homol 10.5 43 0.0015 20.1 -0.5 15 3-17 9-23 (30)
6 4aya_A DNA-binding protein inh 9.8 1.9E+02 0.0065 21.7 2.7 24 164-187 68-91 (97)
7 1b5e_A Protein (deoxycytidylat 8.9 1.4E+02 0.0048 25.9 1.9 15 190-204 213-227 (246)
8 3ed7_A Tsase, TS, thymidylate 8.4 1.5E+02 0.0053 26.5 2.0 18 190-207 235-253 (295)
9 3kgb_A Thymidylate synthase 1/ 8.2 1.5E+02 0.0052 26.5 1.9 14 190-203 232-245 (294)
10 3qj7_A TS, tsase, thymidylate 8.2 1.6E+02 0.0054 26.0 1.9 14 190-203 205-218 (264)
No 1
>2hjn_A MPS1 binder 1, maintenance of ploidy protein MOB1; homodimer, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.4e-61 Score=427.83 Aligned_cols=168 Identities=22% Similarity=0.394 Sum_probs=152.9
Q ss_pred CCCCCchhHHHHHHHHHhhcCCCchhhhcCCCCCCCcCceeeeehHHHHhhhhhhhhhcccccccccccccCCCCceEEE
Q psy5745 74 FEEMDGTLAVQQYIQQQIRKDPSNIDVILTPPDSQDEGVWKYEHLRQFCMELNGLAVRLQYECHPETCTQMTATEQWIFL 153 (254)
Q Consensus 74 f~e~~~~f~lqq~iq~~Lr~~~~~l~~iV~lP~g~d~neWia~h~~~f~~~in~l~~~v~e~Ct~~tCP~M~a~~~~~yl 153 (254)
.+.|+++|+++++++++|+++ ++++++|++|+|+|+|||+|+|++||||++|+|||+++|+||++|||+|+||++|+|+
T Consensus 40 ~~~g~~~~~l~~~~~~~l~~g-~~l~~~V~lP~g~D~neWlA~h~~dFfn~in~lyg~ise~CT~~tCP~MsAg~~~~Yl 118 (236)
T 2hjn_A 40 GTTVTTHQDIKQIVEMTLGSE-GVLNQAVKLPRGEDENEWLAVHCVDFYNQINMLYGSITEFCSPQTCPRMIATNEYEYL 118 (236)
T ss_dssp --------CHHHHHHHHHHGG-GC---CCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHGGGCCTTTCSSCBSSTTEEEC
T ss_pred CCCCccHHHHHHHHHHHhcCC-cCHHHHhcCcCCCchhhHHHHHHHHHHHHHHHHHHHHHcccCcccCCCCcCCCCeeEE
Confidence 357889999999999999993 3999999999999999999999999999999999999999999999999999999999
Q ss_pred EccC--CCCcccChHHHHHHHHHHHHHhhCCCCCCCcc-----------------------eeEEeechhhHHHHhcchh
Q psy5745 154 CAAH--KAPKECPAIDYTRHTLDGAACLLNSNKYFPSR-----------------------IFSHAHFHHTAIFDQFEAE 208 (254)
Q Consensus 154 w~d~--~kp~~~sA~~Yi~~~l~w~~~~l~d~~iFPt~-----------------------VyAHiY~~H~~~~~~l~~e 208 (254)
|+|+ ++|++|||||||+++|+|++++|+|+++|||| ||||||+|||+.|.++|+|
T Consensus 119 W~d~~~kkp~~~~A~~Yi~~lm~wi~~~l~de~iFPs~~~~~FP~~F~~~~v~~I~RRLfRVyAHiY~~Hf~~~~~l~~e 198 (236)
T 2hjn_A 119 WAFQKGQPPVSVSAPKYVECLMRWCQDQFDDESLFPSKVTGTFPEGFIQRVIQPILRRLFRVYAHIYCHHFNEILELNLQ 198 (236)
T ss_dssp BCSSTTSCCBCCCHHHHHHHHHHHHHHHHTCTTTSCSSTTCCCCTTHHHHTHHHHHHHHHHHHHHHHHHSHHHHHHTTCH
T ss_pred eccCCCCCCeeeCHHHHHHHHHHHHHHhccCCccCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 9998 68999999999999999999999999999999 9999999999999999999
Q ss_pred hHHh---HHHHHHHHhhcCCCCCCccccchHhhhhccc
Q psy5745 209 THLC---RRFTVFVMKYNLMSKDNIIVPILEENNENST 243 (254)
Q Consensus 209 ~hln---~hF~~F~~ef~Li~~kel~~Pl~~l~~~~~~ 243 (254)
+||| |||++|+++|+||++||| +||++|++.+..
T Consensus 199 ~hLNt~FkHF~~F~~ef~Li~~kel-~PL~~li~~l~~ 235 (236)
T 2hjn_A 199 TVLNTSFRHFCLFAQEFELLRPADF-GPLLELVMELRD 235 (236)
T ss_dssp HHHHHHHHHHHHHHHHTTCSCGGGG-GGGHHHHHHHCC
T ss_pred hhhhhhHHHHHHHHHHhcCCCHHHh-hhHHHHHHHHHh
Confidence 9999 899999999999999999 999999999865
No 2
>1pi1_A MOB1A; mitotic EXIT network, mitosis, DBF2, cell cycle; 2.00A {Homo sapiens} SCOP: a.29.7.1 PDB: 1r3b_A
Probab=100.00 E-value=4.8e-60 Score=407.99 Aligned_cols=153 Identities=22% Similarity=0.419 Sum_probs=148.1
Q ss_pred HHHhhcCCCchhhhcCCCCCCCcCceeeeehHHHHhhhhhhhhhcccccccccccccCCCCceEEEEccC---CCCcccC
Q psy5745 88 QQQIRKDPSNIDVILTPPDSQDEGVWKYEHLRQFCMELNGLAVRLQYECHPETCTQMTATEQWIFLCAAH---KAPKECP 164 (254)
Q Consensus 88 q~~Lr~~~~~l~~iV~lP~g~d~neWia~h~~~f~~~in~l~~~v~e~Ct~~tCP~M~a~~~~~ylw~d~---~kp~~~s 164 (254)
+++|++ |+++++|++|+|+|+|||+|+|++||||++|+|||+++|+||++|||+|+||++|+|+|+|+ ++|++||
T Consensus 2 ~~~l~~--g~l~~~v~lP~g~d~~eWla~~~~df~~~in~ly~~i~e~Ct~~tCP~MsAg~~~~Ylw~d~~~~kkp~~~~ 79 (185)
T 1pi1_A 2 EATLGS--GNLRQAVMLPEGEDLNEWIAVNTVDFFNQINMLYGTITEFCTEASCPVMSAGPRYEYHWADGTNIKKPIKCS 79 (185)
T ss_dssp CCCTTC--CCHHHHTSCCTTCCHHHHHHHHHHHHHHHHHHHHHHTGGGSCTTTCSSEESSTTCEECBCCSSSCCSCBCCC
T ss_pred ccchhc--CcHHHHhcCcCCCchhhhHHHHHHHHHHHHHHHHHHHhcccCcccCccccCCCCeEEEEecCCCCCCCcccC
Confidence 356777 79999999999999999999999999999999999999999999999999999999999997 6899999
Q ss_pred hHHHHHHHHHHHHHhhCCCCCCCcc----------------------eeEEeechhhHHHHhcchhhHHh---HHHHHHH
Q psy5745 165 AIDYTRHTLDGAACLLNSNKYFPSR----------------------IFSHAHFHHTAIFDQFEAETHLC---RRFTVFV 219 (254)
Q Consensus 165 A~~Yi~~~l~w~~~~l~d~~iFPt~----------------------VyAHiY~~H~~~~~~l~~e~hln---~hF~~F~ 219 (254)
|||||+++|+|++++|+|+++|||| ||||+|+|||+.|.++|+|+||| |||++|+
T Consensus 80 A~~Yi~~~m~wi~~~l~d~~iFPs~~~~~fp~~f~~~~~~I~rRLfRVyaHiY~~Hf~~~~~l~~e~hlNt~f~hF~~F~ 159 (185)
T 1pi1_A 80 APKYIDYLMTWVQDQLDDETLFPSKIGVPFPKNFMSVAKTILKRLFRVYAHIYHQHFDSVMQLQEEAHLNTSFKHFIFFV 159 (185)
T ss_dssp HHHHHHHHHHHHHHHHTCTTTSCSSTTSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCccCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHcCCcceehhhHHHHHHHH
Confidence 9999999999999999999999999 99999999999999999999999 7999999
Q ss_pred HhhcCCCCCCccccchHhhhhccc
Q psy5745 220 MKYNLMSKDNIIVPILEENNENST 243 (254)
Q Consensus 220 ~ef~Li~~kel~~Pl~~l~~~~~~ 243 (254)
++|+||++||+ +||++|++.+.+
T Consensus 160 ~ef~Li~~kel-~Pl~~li~~~~~ 182 (185)
T 1pi1_A 160 QEFNLIDRREL-APLQELIEKLGS 182 (185)
T ss_dssp HHHTCSCGGGG-GGGHHHHHHSSC
T ss_pred HHhCCCCHHHH-HhHHHHHHHHhc
Confidence 99999999999 999999999975
No 3
>1pi1_A MOB1A; mitotic EXIT network, mitosis, DBF2, cell cycle; 2.00A {Homo sapiens} SCOP: a.29.7.1 PDB: 1r3b_A
Probab=99.96 E-value=1.6e-31 Score=230.22 Aligned_cols=124 Identities=17% Similarity=0.275 Sum_probs=112.2
Q ss_pred cccchhhhhhcccCcccCccccccCceEEeeccC---CCCCCCCchHHHHhhhHhhhhhhcccccccccCCCCCCCCCCC
Q psy5745 2 ELNGLAVRLQYECHPETCTQMTATEQWIFLCAAH---KAPKECPAIDYTRHMLPYHIKTHEVHLFQDFNRWPDEPFEEMD 78 (254)
Q Consensus 2 ~~n~l~~~~~~~C~~~tcp~M~a~~~~~yl~a~~---~~p~~~~a~~y~~~~~~w~~~~~~~~~~eif~~~P~k~f~e~~ 78 (254)
+||+|||+++++||++|||+|+||++|+|||+++ |+|++||||+||+|||+|++++|+ |+++||..++.+||+ +
T Consensus 36 ~in~ly~~i~e~Ct~~tCP~MsAg~~~~Ylw~d~~~~kkp~~~~A~~Yi~~~m~wi~~~l~--d~~iFPs~~~~~fp~-~ 112 (185)
T 1pi1_A 36 QINMLYGTITEFCTEASCPVMSAGPRYEYHWADGTNIKKPIKCSAPKYIDYLMTWVQDQLD--DETLFPSKIGVPFPK-N 112 (185)
T ss_dssp HHHHHHHHTGGGSCTTTCSSEESSTTCEECBCCSSSCCSCBCCCHHHHHHHHHHHHHHHHT--CTTTSCSSTTSCCCT-T
T ss_pred HHHHHHHHHhcccCcccCccccCCCCeEEEEecCCCCCCCcccCHHHHHHHHHHHHHHHcC--CCccCCCCCCCCCCh-h
Confidence 7999999999999999999999999999999998 699999999999999999999965 999997777778888 5
Q ss_pred chhHHHHHHHHHhhcC----CCchhhhcCCCCCCCcCceeeeehHHHHhhhhhhh
Q psy5745 79 GTLAVQQYIQQQIRKD----PSNIDVILTPPDSQDEGVWKYEHLRQFCMELNGLA 129 (254)
Q Consensus 79 ~~f~lqq~iq~~Lr~~----~~~l~~iV~lP~g~d~neWia~h~~~f~~~in~l~ 129 (254)
..-.++.++++++|-+ .++++.++.+....++|. ++.|++.|-.+.|++=
T Consensus 113 f~~~~~~I~rRLfRVyaHiY~~Hf~~~~~l~~e~hlNt-~f~hF~~F~~ef~Li~ 166 (185)
T 1pi1_A 113 FMSVAKTILKRLFRVYAHIYHQHFDSVMQLQEEAHLNT-SFKHFIFFVQEFNLID 166 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHHHHHTCSC
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHcCCcceehh-hHHHHHHHHHHhCCCC
Confidence 5568889999998864 468899999999999999 7999999999999863
No 4
>2hjn_A MPS1 binder 1, maintenance of ploidy protein MOB1; homodimer, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.8e-30 Score=229.41 Aligned_cols=123 Identities=20% Similarity=0.272 Sum_probs=110.2
Q ss_pred cccchhhhhhcccCcccCccccccCceEEeeccC--CCCCCCCchHHHHhhhHhhhhhhcccccccccCCCCCCCCCCCc
Q psy5745 2 ELNGLAVRLQYECHPETCTQMTATEQWIFLCAAH--KAPKECPAIDYTRHMLPYHIKTHEVHLFQDFNRWPDEPFEEMDG 79 (254)
Q Consensus 2 ~~n~l~~~~~~~C~~~tcp~M~a~~~~~yl~a~~--~~p~~~~a~~y~~~~~~w~~~~~~~~~~eif~~~P~k~f~e~~~ 79 (254)
+||+||++++|+||++|||+|+||++|+|||+++ |+|++||||+||+|||+|++++|+ |+++||..++.+|++ +.
T Consensus 89 ~in~lyg~ise~CT~~tCP~MsAg~~~~YlW~d~~~kkp~~~~A~~Yi~~lm~wi~~~l~--de~iFPs~~~~~FP~-~F 165 (236)
T 2hjn_A 89 QINMLYGSITEFCSPQTCPRMIATNEYEYLWAFQKGQPPVSVSAPKYVECLMRWCQDQFD--DESLFPSKVTGTFPE-GF 165 (236)
T ss_dssp HHHHHHHHHGGGCCTTTCSSCBSSTTEEECBCSSTTSCCBCCCHHHHHHHHHHHHHHHHT--CTTTSCSSTTCCCCT-TH
T ss_pred HHHHHHHHHHcccCcccCCCCcCCCCeeEEeccCCCCCCeeeCHHHHHHHHHHHHHHhcc--CCccCCCCCCCCCCc-ch
Confidence 6899999999999999999999999999999998 789999999999999999999965 999997666667776 44
Q ss_pred h-hHHHHHHHHHhhcC----CCchhhhcCCCCCCCcCceeeeehHHHHhhhhhh
Q psy5745 80 T-LAVQQYIQQQIRKD----PSNIDVILTPPDSQDEGVWKYEHLRQFCMELNGL 128 (254)
Q Consensus 80 ~-f~lqq~iq~~Lr~~----~~~l~~iV~lP~g~d~neWia~h~~~f~~~in~l 128 (254)
. -.++.++++++|-+ .++++.++.+....++|. ++.|++.|..+.|++
T Consensus 166 ~~~~v~~I~RRLfRVyAHiY~~Hf~~~~~l~~e~hLNt-~FkHF~~F~~ef~Li 218 (236)
T 2hjn_A 166 IQRVIQPILRRLFRVYAHIYCHHFNEILELNLQTVLNT-SFRHFCLFAQEFELL 218 (236)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHSHHHHHHTTCHHHHHH-HHHHHHHHHHHTTCS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhhh-hHHHHHHHHHHhcCC
Confidence 4 56889999998874 468999999999999999 799999999999986
No 5
>3gs2_B Chromobox protein homolog 7; RING1B, CBOX, CBX7, polycomb, E3-ligase, chromosomal protein transcription regulation, chromatin regulator; 1.70A {Homo sapiens}
Probab=10.51 E-value=43 Score=20.06 Aligned_cols=15 Identities=20% Similarity=0.248 Sum_probs=12.8
Q ss_pred ccchhhhhhcccCcc
Q psy5745 3 LNGLAVRLQYECHPE 17 (254)
Q Consensus 3 ~n~l~~~~~~~C~~~ 17 (254)
.|+|-+++.|+|+|.
T Consensus 9 ~n~ltvTi~e~~~p~ 23 (30)
T 3gs2_B 9 ANSITVTFREAQAAE 23 (30)
T ss_dssp ETTEEEEEEEESCST
T ss_pred cCcEEEEEEecCCCc
Confidence 588889999999875
No 6
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=9.85 E-value=1.9e+02 Score=21.74 Aligned_cols=24 Identities=17% Similarity=0.090 Sum_probs=17.5
Q ss_pred ChHHHHHHHHHHHHHhhCCCCCCC
Q psy5745 164 PAIDYTRHTLDGAACLLNSNKYFP 187 (254)
Q Consensus 164 sA~~Yi~~~l~w~~~~l~d~~iFP 187 (254)
-|++||.++..-.++.=.+...|-
T Consensus 68 lAi~YI~~Lq~~L~~~~~~~~~~~ 91 (97)
T 4aya_A 68 HVIDYILDLQIALDSHLKPSFLVQ 91 (97)
T ss_dssp HHHHHHHHHHHHHHTTTSTTCC--
T ss_pred HHHHHHHHHHHHHhcCCCCcchhh
Confidence 588999998888887766666664
No 7
>1b5e_A Protein (deoxycytidylate hydroxymethylase); DNTP synthesizing complex, transferase; HET: DCM; 1.60A {Enterobacteria phage T4} SCOP: d.117.1.1 PDB: 1b49_A* 1b5d_A*
Probab=8.94 E-value=1.4e+02 Score=25.91 Aligned_cols=15 Identities=20% Similarity=0.062 Sum_probs=12.9
Q ss_pred eeEEeechhhHHHHh
Q psy5745 190 IFSHAHFHHTAIFDQ 204 (254)
Q Consensus 190 VyAHiY~~H~~~~~~ 204 (254)
.=||||-+|++.+..
T Consensus 213 gdaHIY~nh~e~~~~ 227 (246)
T 1b5e_A 213 GSLHVYSRHFYLVDH 227 (246)
T ss_dssp EEEEEEGGGHHHHHH
T ss_pred EeEEEcHHHHHHHHH
Confidence 669999999998864
No 8
>3ed7_A Tsase, TS, thymidylate synthase; transferase, methyltransferase, nucleotide biosynthesis; 1.56A {Homo sapiens} SCOP: d.117.1.1 PDB: 3ebu_A* 1hvy_A* 1ypv_A* 1hw3_A* 2onb_A* 3eaw_X* 3gg5_A 3gh0_A 3ef9_A 3edw_X 3ejl_A* 3gh2_X* 4gyh_A 4h1i_A 2rd8_A* 2rda_A 3h9k_A* 3hb8_A* 3ob7_A* 1ju6_A* ...
Probab=8.45 E-value=1.5e+02 Score=26.54 Aligned_cols=18 Identities=17% Similarity=0.176 Sum_probs=14.3
Q ss_pred eeEEeechhhHHHH-hcch
Q psy5745 190 IFSHAHFHHTAIFD-QFEA 207 (254)
Q Consensus 190 VyAHiY~~H~~~~~-~l~~ 207 (254)
.=||||-+|.+.+. +|.-
T Consensus 235 gdaHIY~nH~e~~~~qL~R 253 (295)
T 3ed7_A 235 GDAHIYLNHIEPLKIQLQR 253 (295)
T ss_dssp EEEEEEGGGHHHHHHHTTS
T ss_pred EEEEecHHHHHHHHHHhcC
Confidence 67999999999987 4433
No 9
>3kgb_A Thymidylate synthase 1/2; ssgcid, NIH, niaid, SBRI, UW, decode, methyltransferase, nucleotide biosynt transferase, structural genomics; 2.20A {Encephalitozoon cuniculi} SCOP: d.117.1.1
Probab=8.24 E-value=1.5e+02 Score=26.53 Aligned_cols=14 Identities=14% Similarity=0.097 Sum_probs=12.7
Q ss_pred eeEEeechhhHHHH
Q psy5745 190 IFSHAHFHHTAIFD 203 (254)
Q Consensus 190 VyAHiY~~H~~~~~ 203 (254)
.=||||-.|++.+.
T Consensus 232 gdaHIY~nH~e~~~ 245 (294)
T 3kgb_A 232 GDAHVYLDHVDSLR 245 (294)
T ss_dssp EEEEEEGGGHHHHH
T ss_pred EeEEecHHHHHHHH
Confidence 67999999999887
No 10
>3qj7_A TS, tsase, thymidylate synthase; thymidilate synthase, structural genomics, TB structural GEN consortium, TBSGC, transferase; HET: UMP SPM; 2.50A {Mycobacterium tuberculosis} SCOP: d.117.1.1
Probab=8.15 E-value=1.6e+02 Score=26.04 Aligned_cols=14 Identities=14% Similarity=-0.123 Sum_probs=12.4
Q ss_pred eeEEeechhhHHHH
Q psy5745 190 IFSHAHFHHTAIFD 203 (254)
Q Consensus 190 VyAHiY~~H~~~~~ 203 (254)
.=||||-+|++.+.
T Consensus 205 gdaHIY~nh~e~~~ 218 (264)
T 3qj7_A 205 GDCHIYDNHVEQVR 218 (264)
T ss_dssp EEEEEEGGGHHHHH
T ss_pred EEEEEEHHHHHHHH
Confidence 66899999999886
Done!