RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy5745
         (254 letters)



>gnl|CDD|202711 pfam03637, Mob1_phocein, Mob1/phocein family.  Mob1 is an essential
           Saccharomyces cerevisiae protein, identified from a
           two-hybrid screen, that binds Mps1p, a protein kinase
           essential for spindle pole body duplication and mitotic
           checkpoint regulation. Mob1 contains no known structural
           motifs; however MOB1 is a member of a conserved gene
           family and shares sequence similarity with a
           nonessential yeast gene, MOB2. Mob1 is a phosphoprotein
           in vivo and a substrate for the Mps1p kinase in vitro.
           Conditional alleles of MOB1 cause a late nuclear
           division arrest at restrictive temperature. This family
           also includes phocein, a rat protein that by yeast two
           hybrid interacts with striatin.
          Length = 171

 Score =  170 bits (433), Expect = 1e-53
 Identities = 50/173 (28%), Positives = 71/173 (41%), Gaps = 28/173 (16%)

Query: 88  QQQIRKDPSNIDVILTPPDSQDEGVWKYEHLRQFCMELNGLAVRLQYECHPETCTQMTAT 147
           +  +     ++  I+  P+ +D   W   H+  F  E+N L   +   C P+TC QM+A 
Sbjct: 1   EATLGSG--DLKTIVKLPEGEDLNEWIAVHVVDFFNEINLLYGTISEFCTPQTCPQMSAG 58

Query: 148 EQWIFLCAAHKA-PKECPAIDYTRHTLDGAACLLNSNKYFPS------------------ 188
            Q+ +L A  K  P   PA  Y  H LD     LN  K FP+                  
Sbjct: 59  PQYEYLWADEKGKPTRLPAPQYIDHLLDWIETQLNDEKIFPTKVGVPFPKNFKLIVKKIL 118

Query: 189 ----RIFSHAHFHHTAIFDQFEAETHLCRRFTVFVMKY---NLMSKDNIIVPI 234
               RIF+H +FHH     + E ETHL  RF  FV      NL+ +  +    
Sbjct: 119 RRLFRIFAHIYFHHFDEIVELELETHLNTRFKHFVSFVREFNLIDRKELEPLK 171



 Score = 72.0 bits (177), Expect = 1e-15
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 2  ELNGLAVRLQYECHPETCTQMTATEQWIFLCAAHKA-PKECPAIDYTRHML 51
          E+N L   +   C P+TC QM+A  Q+ +L A  K  P   PA  Y  H+L
Sbjct: 35 EINLLYGTISEFCTPQTCPQMSAGPQYEYLWADEKGKPTRLPAPQYIDHLL 85


>gnl|CDD|233690 TIGR02025, BchH, magnesium chelatase, H subunit.  This model
           represents the H subunit of the magnesium chelatase
           complex responsible for magnesium insertion into the
           protoporphyrin IX ring in the biosynthesis of both
           chlorophyll and bacteriochlorophyll. In
           chlorophyll-utilizing species, this gene is known as
           ChlH, while in bacteriochlorophyll-utilizing spoecies it
           is called BchH. Subunit H is the largest (~140kDa) of
           the three subunits (the others being BchD/ChlD and
           BchI/ChlI), and is known to bind protoporphyrin IX.
           Subunit H is homologous to the CobN subunit of
           cobaltochelatase and by anology with that enzyme,
           subunit H is believed to also bind the magnesium ion
           which is inserted into the ring. In conjunction with the
           hydrolysis of ATP by subunits I and D, a conformation
           change is believed to happen in subunit H causing the
           magnesium ion insertion into the distorted
           protoporphyrin ring [Biosynthesis of cofactors,
           prosthetic groups, and carriers, Chlorophyll and
           bacteriochlorphyll].
          Length = 1224

 Score = 32.1 bits (73), Expect = 0.34
 Identities = 24/107 (22%), Positives = 38/107 (35%), Gaps = 10/107 (9%)

Query: 56  KTHEVHLFQDFNRWPDEPFEEMDGTLAVQQYIQQQIRKDPSNIDVILTPPDSQDEGVWKY 115
           K  +++L  D  R PDEPFE+  G L +    + + R  P+ + V+   P ++       
Sbjct: 683 KAVDLNLDTDCPRPPDEPFEDFVGRLYIYLT-ELENRLIPNGLHVLGEAPSAESLIDTLM 741

Query: 116 E---HLR-----QFCMELNGLAVRLQYECHPET-CTQMTATEQWIFL 153
           E     R          L     R   E H  +        E   +L
Sbjct: 742 EIASVDREELGSSSLPFLVTTGGRSYEEIHRLSEKGDQAERESLEYL 788


>gnl|CDD|216186 pfam00910, RNA_helicase, RNA helicase.  This family includes RNA
          helicases thought to be involved in duplex unwinding
          during viral RNA replication. Members of this family
          are found in a variety of single stranded RNA viruses.
          Length = 105

 Score = 27.6 bits (62), Expect = 2.4
 Identities = 7/21 (33%), Positives = 11/21 (52%)

Query: 58 HEVHLFQDFNRWPDEPFEEMD 78
            V +  DF + PD P +E +
Sbjct: 50 QPVVIIDDFGQNPDGPSDEAE 70


>gnl|CDD|240388 PTZ00372, PTZ00372, endonuclease 4-like protein; Provisional.
          Length = 413

 Score = 27.4 bits (61), Expect = 8.2
 Identities = 12/21 (57%), Positives = 15/21 (71%), Gaps = 1/21 (4%)

Query: 97  NIDVIL-TPPDSQDEGVWKYE 116
           NI +IL TP  + DEGV+K E
Sbjct: 384 NIPIILETPDVNNDEGVYKQE 404


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.322    0.134    0.433 

Gapped
Lambda     K      H
   0.267   0.0708    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,667,098
Number of extensions: 1146794
Number of successful extensions: 842
Number of sequences better than 10.0: 1
Number of HSP's gapped: 838
Number of HSP's successfully gapped: 9
Length of query: 254
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 159
Effective length of database: 6,723,972
Effective search space: 1069111548
Effective search space used: 1069111548
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.2 bits)