RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5745
(254 letters)
>2hjn_A MPS1 binder 1, maintenance of ploidy protein MOB1; homodimer, cell
cycle; 2.00A {Saccharomyces cerevisiae}
Length = 236
Score = 131 bits (331), Expect = 8e-38
Identities = 39/198 (19%), Positives = 71/198 (35%), Gaps = 33/198 (16%)
Query: 66 FNRWPDEPF--EEMDGTLAVQQYIQQQIRKDPS---NIDVILTPPDSQDEGVWKYEHLRQ 120
+ +PF + T+ Q I+Q + ++ + P +DE W H
Sbjct: 26 YTPSHQKPFLQPQAGTTVTTHQDIKQIVEMTLGSEGVLNQAVKLPRGEDENEWLAVHCVD 85
Query: 121 FCMELNGLAVRLQYECHPETCTQMTATEQWIFLCAAH--KAPKECPAIDYTRHTLDGAAC 178
F ++N L + C P+TC +M AT ++ +L A + P A Y +
Sbjct: 86 FYNQINMLYGSITEFCSPQTCPRMIATNEYEYLWAFQKGQPPVSVSAPKYVECLMRWCQD 145
Query: 179 LLNSNKYFPS-----------------------RIFSHAHFHHTAIFDQFEAETHLC--- 212
+ FPS R+++H + HH + +T L
Sbjct: 146 QFDDESLFPSKVTGTFPEGFIQRVIQPILRRLFRVYAHIYCHHFNEILELNLQTVLNTSF 205
Query: 213 RRFTVFVMKYNLMSKDNI 230
R F +F ++ L+ +
Sbjct: 206 RHFCLFAQEFELLRPADF 223
Score = 52.9 bits (126), Expect = 1e-08
Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 1 MELNGLAVRLQYECHPETCTQMTATEQWIFLCAAH--KAPKECPAIDYTRHML 51
++N L + C P+TC +M AT ++ +L A + P A Y ++
Sbjct: 88 NQINMLYGSITEFCSPQTCPRMIATNEYEYLWAFQKGQPPVSVSAPKYVECLM 140
>1pi1_A MOB1A; mitotic EXIT network, mitosis, DBF2, cell cycle; 2.00A {Homo
sapiens} SCOP: a.29.7.1 PDB: 1r3b_A
Length = 185
Score = 115 bits (289), Expect = 4e-32
Identities = 35/178 (19%), Positives = 67/178 (37%), Gaps = 31/178 (17%)
Query: 87 IQQQIRKDPSNIDVILTPPDSQDEGVWKYEHLRQFCMELNGLAVRLQYECHPETCTQMTA 146
++ + N+ + P+ +D W + F ++N L + C +C M+A
Sbjct: 1 MEATLGSG--NLRQAVMLPEGEDLNEWIAVNTVDFFNQINMLYGTITEFCTEASCPVMSA 58
Query: 147 TEQWIFLCAAH---KAPKECPAIDYTRHTLDGAACLLNSNKYFPS--------------- 188
++ + A K P +C A Y + + L+ FPS
Sbjct: 59 GPRYEYHWADGTNIKKPIKCSAPKYIDYLMTWVQDQLDDETLFPSKIGVPFPKNFMSVAK 118
Query: 189 -------RIFSHAHFHHTAIFDQFEAETHL---CRRFTVFVMKYNLMSKDNIIVPILE 236
R+++H + H Q + E HL + F FV ++NL+ + + P+ E
Sbjct: 119 TILKRLFRVYAHIYHQHFDSVMQLQEEAHLNTSFKHFIFFVQEFNLIDRRE-LAPLQE 175
Score = 50.1 bits (119), Expect = 8e-08
Identities = 12/54 (22%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 1 MELNGLAVRLQYECHPETCTQMTATEQWIFLCAAH---KAPKECPAIDYTRHML 51
++N L + C +C M+A ++ + A K P +C A Y +++
Sbjct: 35 NQINMLYGTITEFCTEASCPVMSAGPRYEYHWADGTNIKKPIKCSAPKYIDYLM 88
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 35.6 bits (81), Expect = 0.014
Identities = 18/119 (15%), Positives = 40/119 (33%), Gaps = 32/119 (26%)
Query: 10 LQYECHPETCTQM--TATEQWIFLCAAHKAPKECPAID-YTRHMLPYHIKTHEVH----- 61
L+ + E + + + + P +D Y + +H+K E
Sbjct: 433 LELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTL 492
Query: 62 ---LFQDFNRWPDEPFEEMDGTLAVQQYIQQQIRKDPSNIDVILTPPDS-QDEGVWKYE 116
+F DF R+ ++Q+IR D + + + ++ Q + Y+
Sbjct: 493 FRMVFLDF-RF-----------------LEQKIRHDSTAWNASGSILNTLQQ--LKFYK 531
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.3 bits (73), Expect = 0.15
Identities = 36/196 (18%), Positives = 51/196 (26%), Gaps = 75/196 (38%)
Query: 3 LNGLAVRLQYECHPETCTQMTATEQWIFLCAAHKAP--KECPAIDYTRHML----PYHIK 56
L GL + L+ P Q + P + R L P+H
Sbjct: 386 LYGLNLTLRKAKAPSGLDQ-------------SRIPFSERKLKF-SNR-FLPVASPFH-- 428
Query: 57 THEVHLFQDFNRWPDEPFEEMDGTLAVQQYIQQQIRKDPSNIDVILTPPD------SQDE 110
+H L P A I KD +V D +
Sbjct: 429 SH--LL---------VP--------AS-----DLINKDLVKNNVSFNAKDIQIPVYDTFD 464
Query: 111 GVWKYEHLRQFCMELNGLAVR--LQYECHPETCTQMTATEQWIFLCAAHKAPKECPAIDY 168
G LR ++ V ++ ET TQ AT H +D+
Sbjct: 465 G----SDLRVLSGSISERIVDCIIRLPVKWETTTQFKAT---------H-------ILDF 504
Query: 169 TRHTLDGAACLLNSNK 184
G L + NK
Sbjct: 505 GPGGASGLGVLTHRNK 520
Score = 29.6 bits (66), Expect = 1.1
Identities = 12/63 (19%), Positives = 18/63 (28%), Gaps = 13/63 (20%)
Query: 187 PSRIFSHA-----HFHHT--------AIFDQFEAETHLCRRFTVFVMKYNLMSKDNIIVP 233
P+ F A F+ A D+ L +F +V SK
Sbjct: 23 PTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQ 82
Query: 234 ILE 236
+L
Sbjct: 83 VLN 85
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 0.40
Identities = 8/48 (16%), Positives = 16/48 (33%), Gaps = 19/48 (39%)
Query: 88 QQQIRKDPSNIDVILTPPDSQDEGVWKYEHLRQFCMELNGLAVRLQYE 135
+Q ++K +++ L DS LA++ E
Sbjct: 19 KQALKKLQASLK--LYADDSAP-----------------ALAIKATME 47
>2q02_A Putative cytoplasmic protein; structural genomics, joint CEN
structural genomics, JCSG, protein structure initiative;
2.40A {Salmonella typhimurium LT2} SCOP: c.1.15.4
Length = 272
Score = 29.5 bits (66), Expect = 0.83
Identities = 21/151 (13%), Positives = 48/151 (31%), Gaps = 14/151 (9%)
Query: 53 YHIKTHEVHLFQDFNRWPDEPFEEMDGTLAVQQYIQQQIRKDPSNIDVILTPPDSQDEGV 112
Y ++ ++ FN+ +E ++ +G L Q + + ++L P +
Sbjct: 63 YGLEIVTINAVYPFNQLTEEVVKKTEGLLRDAQGVGARA--------LVLCPLNDGTIVP 114
Query: 113 WKY--EHLRQFCMELNGLAVRLQYE-CHPETCTQMTATEQWIFLCAAHKAPKECPAIDYT 169
+ E +++ ++ E + +A + A K +D
Sbjct: 115 PEVTVEAIKRLSDLFARYDIQGLVEPLGFRVSSLRSAVWAQQLIREAGSPFKVL--LDTF 172
Query: 170 RHTLDGAACLLNSNKYFPSRIFSHAHFHHTA 200
H L A +++ S I H
Sbjct: 173 HHHLYEEAEKEFASRIDISAIG-LVHLSGVE 202
>1ci3_M Protein (cytochrome F); electron transfer protein, complex subunit,
electron transpo; HET: HEM; 1.90A {Phormidium laminosum}
SCOP: b.2.6.1 b.84.2.2 PDB: 1tu2_B*
Length = 249
Score = 28.0 bits (62), Expect = 2.5
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 5/35 (14%)
Query: 67 NRWPDEPFEEMDGTLAVQQYIQQQIRKDPSNIDVI 101
+R P+E EE+ + Q Y D NI ++
Sbjct: 87 DRIPEEMKEEVGPSYLFQPY-----ADDKQNIVLV 116
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding
mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli}
SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Length = 758
Score = 28.0 bits (63), Expect = 3.8
Identities = 14/49 (28%), Positives = 17/49 (34%)
Query: 81 LAVQQYIQQQIRKDPSNIDVILTPPDSQDEGVWKYEHLRQFCMELNGLA 129
L V +I RKD + +E E L F LN LA
Sbjct: 132 LDVVNFISHGTRKDEPTQSSDPGSQPNSEEQAGGEERLENFTTNLNQLA 180
>3tee_A Flagella basal BODY P-ring formation protein FLGA; chaperone,
flagellar P-ring formation, flagellar FLGI protei
periplasmic protein; 1.95A {Salmonella typhimurium}
Length = 219
Score = 27.4 bits (60), Expect = 3.8
Identities = 3/27 (11%), Positives = 9/27 (33%)
Query: 82 AVQQYIQQQIRKDPSNIDVILTPPDSQ 108
+ + Q++ + V L +
Sbjct: 6 QLTTWFSQRLAGFSDEVVVTLRSSPNL 32
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU
proteins, viral protein,transferase; 2.31A {Paramecium
bursaria chlorella virus NY} PDB: 3oy7_A*
Length = 413
Score = 27.5 bits (60), Expect = 5.2
Identities = 30/191 (15%), Positives = 51/191 (26%), Gaps = 18/191 (9%)
Query: 46 YTRHMLPYHIKTHEVHLF--QDFNRWPDEPFEEMDGT-------LAVQQYIQQQIRK--D 94
R ++P K HEV +F F R EE D L Q + + + D
Sbjct: 19 VMRAIVPRISKAHEVIVFGIHAFGRSVHANIEEFDAQTAEHVRGLNEQGFYYSGLSEFID 78
Query: 95 PSNIDVILTPPDSQDEGVWKYEHLRQFCMELNGLAVRLQYECHPETCTQMTATEQWIFLC 154
D+++ D G + + L V L + E + + + + +
Sbjct: 79 VHKPDIVMIYNDPIVIGNYLLAMGKCSHRTKIVLYVDLVSKNIRENLWWIFSHPKVVGVM 138
Query: 155 AAHKAPKEC-------PAIDYTRHTLDGAACLLNSNKYFPSRIFSHAHFHHTAIFDQFEA 207
A K I+ H +D S F + +
Sbjct: 139 AMSKCWISDICNYGCKVPINIVSHFVDTKTIYDARKLVGLSEYNDDVLFLNMNRNTARKR 198
Query: 208 ETHLCRRFTVF 218
F
Sbjct: 199 LDIYVLAAARF 209
>1tyo_A Isocitrate dehydrogenase; enzyme-ethenonadp complex,
oxidoreductase; HET: ENP; 2.15A {Aeropyrum pernix} PDB:
1v94_A 1xgv_A 1xkd_A*
Length = 435
Score = 26.9 bits (60), Expect = 7.6
Identities = 11/48 (22%), Positives = 17/48 (35%), Gaps = 4/48 (8%)
Query: 61 HLFQDFNRWPDEPFEEMDGTLAVQQYIQ----QQIRKDPSNIDVILTP 104
H+ + +G + V I QQI P + VI+ P
Sbjct: 259 HVVTEQEVQEKYGGVRPEGKILVNDRIADNMLQQIITRPWDYQVIVAP 306
>2imj_A Hypothetical protein DUF1348; alpha beta protein, structural
genomics, PSI-2, protein structure initiative; 1.50A
{Pseudomonas fluorescens pf-5} SCOP: d.17.4.23
Length = 166
Score = 25.9 bits (57), Expect = 9.4
Identities = 14/50 (28%), Positives = 19/50 (38%), Gaps = 7/50 (14%)
Query: 110 EGVWKYEHLRQFCMEL-----NGLAVRLQYECHPETCTQMTA--TEQWIF 152
W E + EL N +AVR YE H ++ + E W F
Sbjct: 66 TRKWAKELDYRLIKELWAFTDNRIAVRYAYEWHDDSGNWFRSYGNENWEF 115
>2iv0_A Isocitrate dehydrogenase; oxidoreductase, tricarboxylic acid cycle,
domain swapping, phosphorylation, aromatic cluster,
NADP; 2.5A {Archaeoglobus fulgidus}
Length = 412
Score = 26.5 bits (59), Expect = 9.8
Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 4/46 (8%)
Query: 63 FQDFNRWPDEPFEEMDGTLAVQQYIQ----QQIRKDPSNIDVILTP 104
+ W ++ +G + V+ I QQI DVI P
Sbjct: 251 ITEDELWDKYGGKQPEGKIVVKDRIADNMFQQILTRTDEYDVIALP 296
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.134 0.433
Gapped
Lambda K H
0.267 0.0524 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,960,438
Number of extensions: 226514
Number of successful extensions: 441
Number of sequences better than 10.0: 1
Number of HSP's gapped: 431
Number of HSP's successfully gapped: 19
Length of query: 254
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 163
Effective length of database: 4,160,982
Effective search space: 678240066
Effective search space used: 678240066
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (25.8 bits)