RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5745
         (254 letters)



>d1pi1a_ a.29.7.1 (A:) Mob1a {Human (Homo sapiens) [TaxId: 9606]}
          Length = 185

 Score =  134 bits (338), Expect = 7e-40
 Identities = 33/162 (20%), Positives = 61/162 (37%), Gaps = 28/162 (17%)

Query: 97  NIDVILTPPDSQDEGVWKYEHLRQFCMELNGLAVRLQYECHPETCTQMTATEQWIFLCAA 156
           N+   +  P+ +D   W   +   F  ++N L   +   C   +C  M+A  ++ +  A 
Sbjct: 9   NLRQAVMLPEGEDLNEWIAVNTVDFFNQINMLYGTITEFCTEASCPVMSAGPRYEYHWAD 68

Query: 157 H---KAPKECPAIDYTRHTLDGAACLLNSNKYFPS----------------------RIF 191
               K P +C A  Y  + +      L+    FPS                      R++
Sbjct: 69  GTNIKKPIKCSAPKYIDYLMTWVQDQLDDETLFPSKIGVPFPKNFMSVAKTILKRLFRVY 128

Query: 192 SHAHFHHTAIFDQFEAETHL---CRRFTVFVMKYNLMSKDNI 230
           +H +  H     Q + E HL    + F  FV ++NL+ +  +
Sbjct: 129 AHIYHQHFDSVMQLQEEAHLNTSFKHFIFFVQEFNLIDRREL 170



 Score = 53.7 bits (129), Expect = 2e-09
 Identities = 12/54 (22%), Positives = 24/54 (44%), Gaps = 3/54 (5%)

Query: 1  MELNGLAVRLQYECHPETCTQMTATEQWIFLCAAH---KAPKECPAIDYTRHML 51
           ++N L   +   C   +C  M+A  ++ +  A     K P +C A  Y  +++
Sbjct: 35 NQINMLYGTITEFCTEASCPVMSAGPRYEYHWADGTNIKKPIKCSAPKYIDYLM 88


>d1ci3m1 b.2.6.1 (M:1-169,M:232-249) Cytochrome f, large domain
           {Phormidium laminosum [TaxId: 32059]}
          Length = 187

 Score = 28.1 bits (63), Expect = 0.76
 Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 5/35 (14%)

Query: 67  NRWPDEPFEEMDGTLAVQQYIQQQIRKDPSNIDVI 101
           +R P+E  EE+  +   Q Y       D  NI ++
Sbjct: 87  DRIPEEMKEEVGPSYLFQPY-----ADDKQNIVLV 116


>d1orfa_ b.47.1.2 (A:) Granzyme A {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 232

 Score = 26.2 bits (56), Expect = 4.1
 Identities = 17/134 (12%), Positives = 35/134 (26%), Gaps = 5/134 (3%)

Query: 25  TEQWIFLCAAHKAPKECPAIDYTRHMLPYHIKTHEVHLFQDFNRWPDEPFEEMDGTLAVQ 84
            + W+ L AAH    +   +    H +     T ++ L +    +P       +G L + 
Sbjct: 32  AKDWV-LTAAHCNLNKRSQVILGAHSITREEPTKQIMLVKKEFPYPCYDPATREGDLKLL 90

Query: 85  QYIQQQIRKDPSNIDVILTPPDSQDEGVWKYEHLRQFCMELNGLAVRLQY----ECHPET 140
           Q  ++        I  +    D    G                 +  L+         + 
Sbjct: 91  QLTEKAKINKYVTILHLPKKGDDVKPGTMCQVAGWGRTHNSASWSDTLREVEITIIDRKV 150

Query: 141 CTQMTATEQWIFLC 154
           C           + 
Sbjct: 151 CNDRNHYNFNPVIG 164


>d2fcla1 d.218.1.11 (A:1-157) Hypothetical protein TM1012
           {Thermotoga maritima [TaxId: 2336]}
          Length = 157

 Score = 25.4 bits (55), Expect = 4.8
 Identities = 6/71 (8%), Positives = 23/71 (32%), Gaps = 5/71 (7%)

Query: 66  FNRWPDEPFEEMDGTLAVQQYIQQQIRKDPSNIDVILTPPDSQDEGVWKYEHLRQFCM-- 123
           F+ +  +             + +  +  D   ++++       ++G W+           
Sbjct: 60  FSEFVSKKVRFSSTEKICSHFGE--LIIDGIKVEIMGDIRKRLEDGTWEDPVDLNKYKRF 117

Query: 124 -ELNGLAVRLQ 133
            E +G+ + + 
Sbjct: 118 VETHGMKIPVL 128


>d1uuza_ d.233.1.1 (A:) Inhibitor of vertebrate lysozyme, Ivy
           {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 130

 Score = 25.1 bits (55), Expect = 5.1
 Identities = 7/28 (25%), Positives = 14/28 (50%), Gaps = 6/28 (21%)

Query: 68  RWPDEPFEEMDGTLAVQQYIQQQIRKDP 95
           RW  EP  ++      ++ + +Q+  DP
Sbjct: 105 RWYGEPSRQV------RELLMKQLESDP 126


>d2imja1 d.17.4.23 (A:5-159) Hypothetical protein PFL3262
           {Pseudomonas fluorescens [TaxId: 294]}
          Length = 155

 Score = 24.7 bits (54), Expect = 9.5
 Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 7/47 (14%)

Query: 113 WKYEHLRQFCMEL-----NGLAVRLQYECHPETCTQMTA--TEQWIF 152
           W  E   +   EL     N +AVR  YE H ++     +   E W F
Sbjct: 65  WAKELDYRLIKELWAFTDNRIAVRYAYEWHDDSGNWFRSYGNENWEF 111


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.134    0.433 

Gapped
Lambda     K      H
   0.267   0.0687    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 989,187
Number of extensions: 46541
Number of successful extensions: 129
Number of sequences better than 10.0: 1
Number of HSP's gapped: 125
Number of HSP's successfully gapped: 13
Length of query: 254
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 171
Effective length of database: 1,268,006
Effective search space: 216829026
Effective search space used: 216829026
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (23.9 bits)