Query psy5746
Match_columns 292
No_of_seqs 87 out of 89
Neff 4.2
Searched_HMMs 29240
Date Fri Aug 16 16:57:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5746.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5746hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hcs_A TNF receptor-associated 98.2 3.6E-07 1.2E-11 76.8 1.5 82 32-123 6-110 (170)
2 3knv_A TNF receptor-associated 97.7 8E-06 2.7E-10 68.0 1.8 85 33-120 20-130 (141)
3 3hct_A TNF receptor-associated 97.7 9E-06 3.1E-10 64.8 1.3 80 35-124 9-111 (118)
4 1rmd_A RAG1; V(D)J recombinati 97.7 9.3E-06 3.2E-10 64.1 1.0 82 38-122 17-115 (116)
5 2a25_A Ubiquitin ligase SIAH1; 96.9 0.00016 5.6E-09 63.1 0.2 35 90-124 3-37 (193)
6 2yuc_A TNF receptor-associated 96.0 0.0024 8.4E-08 46.8 2.0 39 83-125 34-72 (76)
7 2yre_A F-box only protein 30; 95.0 0.0097 3.3E-07 48.0 2.3 41 81-122 53-93 (100)
8 1flk_A TNF receptor associated 94.6 0.088 3E-06 46.4 7.6 135 91-235 7-160 (228)
9 2a25_A Ubiquitin ligase SIAH1; 94.3 0.015 5.1E-07 50.7 1.8 36 82-118 26-61 (193)
10 3hcs_A TNF receptor-associated 90.0 0.15 5.3E-06 42.2 2.6 42 78-124 96-138 (170)
11 2yuc_A TNF receptor-associated 85.0 0.43 1.5E-05 34.5 2.2 39 83-125 7-46 (76)
12 2d9k_A FLN29 gene product; zin 80.4 0.47 1.6E-05 34.3 0.8 33 84-121 35-67 (75)
13 2d9k_A FLN29 gene product; zin 80.2 0.53 1.8E-05 34.0 1.0 34 84-121 8-41 (75)
14 2egp_A Tripartite motif-contai 62.7 0.66 2.2E-05 33.1 -2.0 30 37-67 5-35 (79)
15 2ysj_A Tripartite motif-contai 60.8 0.82 2.8E-05 31.5 -1.7 30 37-67 13-43 (63)
16 1jm7_B BARD1, BRCA1-associated 59.9 1.7 5.9E-05 33.8 -0.2 33 35-67 13-46 (117)
17 2ysl_A Tripartite motif-contai 59.8 0.82 2.8E-05 32.2 -1.9 29 38-67 14-43 (73)
18 2ecv_A Tripartite motif-contai 58.5 1.1 3.7E-05 32.0 -1.5 30 37-67 12-42 (85)
19 2ecj_A Tripartite motif-contai 57.3 1.4 4.7E-05 29.5 -1.0 31 36-67 7-38 (58)
20 2ecw_A Tripartite motif-contai 55.4 1.1 3.9E-05 31.9 -1.8 28 39-67 14-42 (85)
21 3ivv_A Speckle-type POZ protei 54.7 28 0.00097 27.4 6.2 52 178-233 29-83 (145)
22 2ecy_A TNF receptor-associated 54.2 1.4 4.6E-05 30.7 -1.5 32 35-67 6-38 (66)
23 2foj_A Ubiquitin carboxyl-term 53.8 46 0.0016 26.4 7.4 53 178-233 33-88 (155)
24 2ckl_B Ubiquitin ligase protei 52.6 1.7 5.7E-05 35.8 -1.5 29 39-67 49-78 (165)
25 4ic3_A E3 ubiquitin-protein li 51.5 2.8 9.7E-05 30.2 -0.2 28 39-67 19-48 (74)
26 2csy_A Zinc finger protein 183 50.8 1.7 5.7E-05 31.5 -1.6 27 40-67 11-38 (81)
27 1z6u_A NP95-like ring finger p 50.8 5.7 0.00019 32.7 1.5 30 37-67 71-101 (150)
28 1jm7_A BRCA1, breast cancer ty 49.4 2.8 9.7E-05 31.7 -0.5 31 36-67 13-44 (112)
29 2djb_A Polycomb group ring fin 48.3 2.8 9.4E-05 29.7 -0.7 29 39-67 10-42 (72)
30 2ct2_A Tripartite motif protei 47.4 2.8 9.7E-05 30.2 -0.8 29 39-67 10-45 (88)
31 3fl2_A E3 ubiquitin-protein li 47.1 5.2 0.00018 31.2 0.7 31 36-67 44-75 (124)
32 2ecg_A Baculoviral IAP repeat- 46.8 5.6 0.00019 28.5 0.8 28 39-67 20-49 (75)
33 3lrq_A E3 ubiquitin-protein li 46.1 5.3 0.00018 30.3 0.5 33 34-67 12-46 (100)
34 3ztg_A E3 ubiquitin-protein li 42.1 2 6.8E-05 31.7 -2.4 29 39-67 8-37 (92)
35 2ecn_A Ring finger protein 141 42.0 5.8 0.0002 27.6 0.2 28 40-67 11-40 (70)
36 4ayc_A E3 ubiquitin-protein li 42.0 5.2 0.00018 32.0 -0.1 33 34-67 43-76 (138)
37 1e4u_A Transcriptional repress 41.5 2.9 0.0001 31.0 -1.5 27 41-67 8-38 (78)
38 2ckl_A Polycomb group ring fin 40.8 8.5 0.00029 29.2 1.0 28 39-67 10-39 (108)
39 4ghu_A TNF receptor-associated 39.9 1.1E+02 0.0036 26.1 7.9 41 178-222 62-104 (198)
40 1ca9_A TRAF2, protein (TNF rec 39.4 32 0.0011 28.7 4.4 40 179-222 66-107 (192)
41 1lb6_A TNF receptor-associated 39.2 89 0.0031 24.9 7.0 54 179-235 28-90 (160)
42 3hqi_A Speckle-type POZ protei 34.3 58 0.002 28.7 5.5 52 177-232 24-78 (312)
43 2ea6_A Ring finger protein 4; 32.9 4.2 0.00014 27.8 -1.8 28 40-67 11-48 (69)
44 3ukx_C Bimax2 peptide; arm rep 32.5 5.4 0.00019 24.8 -1.1 15 13-27 13-27 (28)
45 2y43_A E3 ubiquitin-protein li 32.4 13 0.00045 27.6 0.8 29 38-67 16-46 (99)
46 3ng2_A RNF4, snurf, ring finge 29.7 7.4 0.00025 26.8 -0.9 27 41-67 7-43 (71)
47 2yho_A E3 ubiquitin-protein li 28.7 11 0.00037 27.7 -0.2 28 39-67 13-42 (79)
48 2xeu_A Ring finger protein 4; 27.9 9 0.00031 25.7 -0.8 25 43-67 2-36 (64)
49 1t1h_A Gspef-atpub14, armadill 27.5 5.5 0.00019 28.3 -2.0 27 40-67 4-31 (78)
50 2yur_A Retinoblastoma-binding 25.7 6.7 0.00023 27.9 -1.8 27 40-67 11-39 (74)
51 2f1z_A Ubiquitin carboxyl-term 25.4 92 0.0031 29.8 5.6 41 179-222 46-86 (522)
52 2jny_A Uncharacterized BCR; st 25.3 14 0.00049 27.2 -0.1 28 37-67 3-31 (67)
53 3t6p_A Baculoviral IAP repeat- 24.8 18 0.00062 34.0 0.5 31 36-67 287-319 (345)
54 2ect_A Ring finger protein 126 24.3 10 0.00036 26.8 -1.0 29 39-67 10-44 (78)
55 3l11_A E3 ubiquitin-protein li 23.8 9.5 0.00032 29.2 -1.4 24 43-67 14-38 (115)
56 2gkw_A TNF receptor-associated 22.8 3.3E+02 0.011 22.6 8.4 53 179-235 63-124 (192)
57 4gjh_A TNF receptor-associated 22.7 1.3E+02 0.0044 24.7 5.3 53 179-235 47-108 (178)
58 2kr4_A Ubiquitin conjugation f 22.5 8.9 0.00031 28.4 -1.7 29 39-67 9-37 (85)
59 2d8t_A Dactylidin, ring finger 22.4 26 0.0009 24.3 0.8 24 43-67 14-38 (71)
60 2jun_A Midline-1; B-BOX, TRIM, 22.0 17 0.00057 27.2 -0.3 25 43-67 2-29 (101)
61 1wgm_A Ubiquitin conjugation f 21.4 9 0.00031 29.4 -2.0 30 38-67 16-46 (98)
62 2l0b_A E3 ubiquitin-protein li 21.1 24 0.00082 26.1 0.4 27 41-67 37-69 (91)
63 2pk7_A Uncharacterized protein 20.7 20 0.00068 26.6 -0.1 15 38-52 2-16 (69)
64 2k5r_A Uncharacterized protein 20.3 19 0.00064 28.6 -0.4 18 38-56 2-19 (97)
No 1
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.18 E-value=3.6e-07 Score=76.77 Aligned_cols=82 Identities=20% Similarity=0.298 Sum_probs=57.4
Q ss_pred cchhhHHHhhccceecceeCCCCCcchhhcch-hHhH-h--hhhhhh---------h-hc---------chhhhhhhhcc
Q psy5746 32 VKADKLEQRLGGILCCAVCLDLPRSAVYQMQD-FVMK-L--LHVLTV---------G-LK---------SARAVHHVTLL 88 (292)
Q Consensus 32 ~~~~~le~~L~~ll~C~VC~dlp~p~i~QC~~-HL~C-~--~~lla~---------~-L~---------vEk~~sH~~~~ 88 (292)
|-+.++.+.+.+.+.|++|+++...| +|+.. |.+| . ...+.. . +. +++.+
T Consensus 6 g~~~~~~~~~~~~~~C~IC~~~~~~p-v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i------ 78 (170)
T 3hcs_A 6 GYDVEFDPPLESKYECPICLMALREA-VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREI------ 78 (170)
T ss_dssp CBCSEESSCCCGGGBCTTTCSBCSSE-EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHH------
T ss_pred CCChhhccCCCCCCCCCCCChhhcCc-EECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHH------
Confidence 33444666788899999999999988 45778 9999 2 222221 1 11 45555
Q ss_pred ccCeeeecccCCCCCccccccchhhhhhhhCCCCC
Q psy5746 89 LRKLLTTCKYSMIGCPWCGPQHELKSHEESCAHPH 123 (292)
Q Consensus 89 C~~r~~~CkY~~~GC~W~Gp~~e~~~HE~~C~f~~ 123 (292)
.+..|.|++ .||.|.++..++..|+..|.|..
T Consensus 79 -~~l~v~C~n--~GC~~~~~~~~l~~H~~~C~~~~ 110 (170)
T 3hcs_A 79 -LSLMVKCPN--EGCLHKMELRHLEDHQAHCEFAL 110 (170)
T ss_dssp -HTSEEECCS--TTCCCEEEGGGHHHHHTTCTTSE
T ss_pred -hhcccCCCC--CCCCceecHhHHHHHHhcCCcee
Confidence 367788886 48888888888888888888754
No 2
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=97.74 E-value=8e-06 Score=67.98 Aligned_cols=85 Identities=26% Similarity=0.443 Sum_probs=57.2
Q ss_pred chhhHHHhhccceecceeCCCCCcchhhcch-hHhH-h--hhhhh---------hh-h---------cchhhhh--hhhc
Q psy5746 33 KADKLEQRLGGILCCAVCLDLPRSAVYQMQD-FVMK-L--LHVLT---------VG-L---------KSARAVH--HVTL 87 (292)
Q Consensus 33 ~~~~le~~L~~ll~C~VC~dlp~p~i~QC~~-HL~C-~--~~lla---------~~-L---------~vEk~~s--H~~~ 87 (292)
..+.+.+.|...+.|++|+++...| +|... |..| . ...+. +. + ...++.. ..+.
T Consensus 20 ~~~~~~~~l~~~~~C~IC~~~~~~p-v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~ 98 (141)
T 3knv_A 20 SKTLLGTKLEAKYLCSACRNVLRRP-FQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARR 98 (141)
T ss_dssp CGGGTGGGCCGGGBCTTTCSBCSSE-EECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCEECHHHHH
T ss_pred chhhhhccCCcCcCCCCCChhhcCc-EECCCCCccCHHHHHHHHhcCCCCCCCCCCcccccccccccchhhhcccHHHHH
Confidence 3455667888999999999999988 45666 8888 2 22221 11 1 0000000 1123
Q ss_pred cccCeeeecccCCCCCccccccchhhh-hhhhCC
Q psy5746 88 LLRKLLTTCKYSMIGCPWCGPQHELKS-HEESCA 120 (292)
Q Consensus 88 ~C~~r~~~CkY~~~GC~W~Gp~~e~~~-HE~~C~ 120 (292)
...+..|.|+| .||.|.|.+.+..+ |+..|.
T Consensus 99 ~i~~L~v~Cpn--~GC~~~~~l~~l~~~H~~~~~ 130 (141)
T 3knv_A 99 EVESLPAVCPS--DGCTWKGTLKEYESCHEGRCP 130 (141)
T ss_dssp HHHTSEEECCS--TTCCCEEEHHHHHHHTTTCCH
T ss_pred HHcccccccCC--CCCCCEeEHHHHHHHHHHHhH
Confidence 34689999999 79999999999998 999884
No 3
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=97.69 E-value=9e-06 Score=64.76 Aligned_cols=80 Identities=20% Similarity=0.340 Sum_probs=55.9
Q ss_pred hhHHHhhccceecceeCCCCCcchhhcch-hHhH---hhhhhh---------hh-hc---------chhhhhhhhccccC
Q psy5746 35 DKLEQRLGGILCCAVCLDLPRSAVYQMQD-FVMK---LLHVLT---------VG-LK---------SARAVHHVTLLLRK 91 (292)
Q Consensus 35 ~~le~~L~~ll~C~VC~dlp~p~i~QC~~-HL~C---~~~lla---------~~-L~---------vEk~~sH~~~~C~~ 91 (292)
.++.+.+...+.|++|+++...|+. ... |..| ....+. +. +. +++.+ ..
T Consensus 9 ~~~~~~~~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i-------~~ 80 (118)
T 3hct_A 9 VEFDPPLESKYECPICLMALREAVQ-TPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREI-------LS 80 (118)
T ss_dssp SCBSSCCCGGGBCTTTCSBCSSEEE-CTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHH-------HT
T ss_pred hhhccCCCCCCCCCcCChhhcCeEE-CCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHH-------cc
Confidence 3355677788999999999988743 344 7777 212211 11 11 44555 57
Q ss_pred eeeecccCCCCCccccccchhhhhhhhCCCCCC
Q psy5746 92 LLTTCKYSMIGCPWCGPQHELKSHEESCAHPHK 124 (292)
Q Consensus 92 r~~~CkY~~~GC~W~Gp~~e~~~HE~~C~f~~k 124 (292)
..+.|.+ .||.|.|+..++.+|++.|.+-..
T Consensus 81 l~v~C~n--~gC~~~~~~~~l~~H~~~c~~~~~ 111 (118)
T 3hct_A 81 LMVKCPN--EGCLHKMELRHLEDHQAHCEFALL 111 (118)
T ss_dssp SEEECSS--TTCCCEEEGGGSGGGTSSSCC---
T ss_pred ceeECCC--CCCCCEEeeHHHHHHHHHchhhhh
Confidence 8999996 799999999999999999988544
No 4
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=97.66 E-value=9.3e-06 Score=64.11 Aligned_cols=82 Identities=15% Similarity=0.229 Sum_probs=53.1
Q ss_pred HHhhccceecceeCCCCCcchh-hcchhHhH---hhhhhh---------hh-hcchh---hhhhhhccccCeeeecccCC
Q psy5746 38 EQRLGGILCCAVCLDLPRSAVY-QMQDFVMK---LLHVLT---------VG-LKSAR---AVHHVTLLLRKLLTTCKYSM 100 (292)
Q Consensus 38 e~~L~~ll~C~VC~dlp~p~i~-QC~~HL~C---~~~lla---------~~-L~vEk---~~sH~~~~C~~r~~~CkY~~ 100 (292)
.+.+...+.|++|++....|+. .|. |..| ....+. +. +..+. .............+.|.+.
T Consensus 17 ~~~~~~~~~C~IC~~~~~~p~~~~Cg-H~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~l~v~C~~~- 94 (116)
T 1rmd_A 17 PAHFVKSISCQICEHILADPVETSCK-HLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNSLMVKCPAQ- 94 (116)
T ss_dssp CHHHHHHTBCTTTCSBCSSEEECTTS-CEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHHCEEECCST-
T ss_pred HHhccCCCCCCCCCcHhcCcEEcCCC-CcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHHHhcCCCCCC-
Confidence 3455567899999999988754 343 6666 222221 11 11110 0111123335789999996
Q ss_pred CCCccccccchhhhhhhhCCCC
Q psy5746 101 IGCPWCGPQHELKSHEESCAHP 122 (292)
Q Consensus 101 ~GC~W~Gp~~e~~~HE~~C~f~ 122 (292)
||.|.++..+...|+..|...
T Consensus 95 -gC~~~~~~~~~~~H~~~C~~~ 115 (116)
T 1rmd_A 95 -DCNEEVSLEKYNHHVSSHKES 115 (116)
T ss_dssp -TCCCEEEHHHHHHHHHTSCCC
T ss_pred -CCcchhhHhHHHHHHHHhhcc
Confidence 999999999999999999874
No 5
>2a25_A Ubiquitin ligase SIAH1; protein-peptide complex, ligase; 2.20A {Homo sapiens} PDB: 2an6_A 1k2f_A
Probab=96.88 E-value=0.00016 Score=63.08 Aligned_cols=35 Identities=34% Similarity=0.609 Sum_probs=1.2
Q ss_pred cCeeeecccCCCCCccccccchhhhhhhhCCCCCC
Q psy5746 90 RKLLTTCKYSMIGCPWCGPQHELKSHEESCAHPHK 124 (292)
Q Consensus 90 ~~r~~~CkY~~~GC~W~Gp~~e~~~HE~~C~f~~k 124 (292)
+...+||+|+..||.+..+++++..||+.|.|++-
T Consensus 3 ~s~~~pC~~~~~GC~~~~~y~~~~~He~~C~f~p~ 37 (193)
T 2a25_A 3 NSVLFPCKYASSGCEITLPHTEKADHEELCEFRPY 37 (193)
T ss_dssp ---------------------------------CE
T ss_pred cceEecCCCCCCCCCcccccccccchhhcCCCCCc
Confidence 46788999999999999999999999998888765
No 6
>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens}
Probab=96.03 E-value=0.0024 Score=46.79 Aligned_cols=39 Identities=21% Similarity=0.326 Sum_probs=34.6
Q ss_pred hhhhccccCeeeecccCCCCCccccccchhhhhhhhCCCCCCC
Q psy5746 83 HHVTLLLRKLLTTCKYSMIGCPWCGPQHELKSHEESCAHPHKS 125 (292)
Q Consensus 83 sH~~~~C~~r~~~CkY~~~GC~W~Gp~~e~~~HE~~C~f~~ks 125 (292)
.|...+|+.|++.|+| |.+..+..++..|++.|......
T Consensus 34 ~H~~~~C~~r~v~C~~----C~~~~~~~~l~~H~~~Cp~~~v~ 72 (76)
T 2yuc_A 34 AHLQHDCPKRRLKCEF----CGCDFSGEAYESHEGMCPQESSG 72 (76)
T ss_dssp TTTTTSCTTSCCCCSS----SCCCCCHHHHHHTTTSCTTSSCC
T ss_pred hhCHhhCCCcceECCC----CCCccCHHHHHHHHhHCCCCccC
Confidence 4888899999999999 99999999999999999876543
No 7
>2yre_A F-box only protein 30; zinc binding, E3 ubiquitin ligase, SCF, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.04 E-value=0.0097 Score=48.00 Aligned_cols=41 Identities=29% Similarity=0.468 Sum_probs=36.1
Q ss_pred hhhhhhccccCeeeecccCCCCCccccccchhhhhhhhCCCC
Q psy5746 81 AVHHVTLLLRKLLTTCKYSMIGCPWCGPQHELKSHEESCAHP 122 (292)
Q Consensus 81 ~~sH~~~~C~~r~~~CkY~~~GC~W~Gp~~e~~~HE~~C~f~ 122 (292)
+-.|. ..|+...++|.|+..||+.++.-.++.+||++|.-.
T Consensus 53 L~EH~-~~CP~a~v~C~~~~yGCp~~~~R~~L~~He~~CPas 93 (100)
T 2yre_A 53 ADEHR-LLCPFERVPCLNSDFGCPFTMARNKVAEHLEMCPAS 93 (100)
T ss_dssp HHHHH-HHCSSSEEECTTTTTTCCCEEESSTHHHHHHTCGGG
T ss_pred HHHHH-hhcccccccccccCcCCceeecHHHHHHHHhhCCce
Confidence 33475 669999999999999999999999999999999643
No 8
>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A
Probab=94.63 E-value=0.088 Score=46.42 Aligned_cols=135 Identities=10% Similarity=0.060 Sum_probs=58.1
Q ss_pred CeeeecccCCCCCcccc-----ccchhhhhhhhCCCCCCChHHHHHHHHHHhhhHHHHHHHHHHHHHhhccCCc-eeeee
Q psy5746 91 KLLTTCKYSMIGCPWCG-----PQHELKSHEESCAHPHKSGAEVMESLQAIETTKDIEKRLYDNLFELLSYEKI-IFNEL 164 (292)
Q Consensus 91 ~r~~~CkY~~~GC~W~G-----p~~e~~~HE~~C~f~~ksG~Elme~L~~~d~~~~~~~~~~~~i~~LLS~ekI-~f~dL 164 (292)
-..+.|+|...||...+ +..++..|.+.-. ..=++.+...=...+.+.......+..|..... .....
T Consensus 7 ~~~i~c~~~~~gc~~~~~~~~~~r~~~~~h~~~~~------~~h~~~~~~~i~~~~~~i~~~~~~l~~l~~~~~~g~~~w 80 (228)
T 1flk_A 7 ADSMKSSVESLQNRVTELESVDKSAGQVARNTGLL------ESQLSRHDQMLSVHDIRLADMDLRFQVLETASYNGVLIW 80 (228)
T ss_dssp -----------------CTTTTTTTTTHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSEEEE
T ss_pred hhheeccccccCceeeccccccchhHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcCcEEEE
Confidence 35788999999999999 9999999987610 111222222222223333333333333333211 01112
Q ss_pred eeeee-ec-cccccc--ceeeecceEEe--cCEEEEEEEEecCCCCCCCCCcceeEEEEEEccCCC-------CceEEEE
Q psy5746 165 QMKPY-RT-DEFIHK--LFYETSRFSAF--NNQWVVKARINTCQRDPTLSSDREMTYQLILKTKTT-------TAMTVHF 231 (292)
Q Consensus 165 Ql~Py-rt-d~f~~~--lfyes~rF~Af--~~qWvvkarin~~~~~p~~s~~r~l~~qL~Lks~~~-------~~l~v~y 231 (292)
.+.-| ++ ++.... .++.|+.|.+= +..|.+++..|.+.. +....|+.-|.|-+... -.-.+++
T Consensus 81 kI~nfS~~~~~~~~g~~~~i~S~~F~vg~~Gy~w~i~~yPnG~~~----~~~~~lSlyL~l~~~~~d~~l~Wp~~a~~~l 156 (228)
T 1flk_A 81 KIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGM----GKGTHLSLFFVIMRGEYDALLPWPFKQKVTL 156 (228)
T ss_dssp EEECHHHHHHHHHTTSCCCEECCCEESSTTSCEECEEEETTCCGG----GTTTEEEEEECCBCCTTTTSSCSSCCCCEEE
T ss_pred EECCHHHHHHHhhcCCCeeEECceEEeCCCCcEEEEEEEcCCCCC----CCCCEEEEEEEEecCCccccCCCcEEEEEEE
Confidence 22222 01 111111 37889999998 899999999885421 12245777777654332 1245666
Q ss_pred EEEe
Q psy5746 232 MVLR 235 (292)
Q Consensus 232 ~~l~ 235 (292)
.|++
T Consensus 157 ~lld 160 (228)
T 1flk_A 157 MLMD 160 (228)
T ss_dssp EECC
T ss_pred EEEc
Confidence 6665
No 9
>2a25_A Ubiquitin ligase SIAH1; protein-peptide complex, ligase; 2.20A {Homo sapiens} PDB: 2an6_A 1k2f_A
Probab=94.29 E-value=0.015 Score=50.65 Aligned_cols=36 Identities=19% Similarity=0.313 Sum_probs=22.5
Q ss_pred hhhhhccccCeeeecccCCCCCccccccchhhhhhhh
Q psy5746 82 VHHVTLLLRKLLTTCKYSMIGCPWCGPQHELKSHEES 118 (292)
Q Consensus 82 ~sH~~~~C~~r~~~CkY~~~GC~W~Gp~~e~~~HE~~ 118 (292)
..|| +.|..++..|.++..+|.|+|...++..|-..
T Consensus 26 ~~He-~~C~f~p~~Cp~~g~~C~~~G~~~~l~~H~~~ 61 (193)
T 2a25_A 26 ADHE-ELCEFRPYSCPCPGASCKWQGSLDAVMPHLMH 61 (193)
T ss_dssp -----------CEECCCC--CCCCEECSTTHHHHHHH
T ss_pred cchh-hcCCCCCccCCCCCCCCcCCCCHHHHHHHHHH
Confidence 3486 68999999999987779999999999999875
No 10
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=89.99 E-value=0.15 Score=42.24 Aligned_cols=42 Identities=14% Similarity=0.201 Sum_probs=34.4
Q ss_pred chhhhhhhhccccCeeeecccCCCCCccccccchhhhhh-hhCCCCCC
Q psy5746 78 SARAVHHVTLLLRKLLTTCKYSMIGCPWCGPQHELKSHE-ESCAHPHK 124 (292)
Q Consensus 78 vEk~~sH~~~~C~~r~~~CkY~~~GC~W~Gp~~e~~~HE-~~C~f~~k 124 (292)
.+...+|+ ..|+.+++.|+ ||.|.++..++.+|. ..|.++..
T Consensus 96 ~~~l~~H~-~~C~~~~v~C~----~C~~~~~r~~l~~H~~~~C~~r~~ 138 (170)
T 3hcs_A 96 LRHLEDHQ-AHCEFALMDCP----QCQRPFQKFHINIHILKDCPRRQV 138 (170)
T ss_dssp GGGHHHHH-TTCTTSEEECT----TTCCEEEGGGHHHHHHHTCTTCEE
T ss_pred HhHHHHHH-hcCCceeeECC----CCChHHHHHHHHHHhhhhCCCCCe
Confidence 45555686 89999999996 999999999999998 47887754
No 11
>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain associated with ring and TRAF domains protein 1, malignant 62; NMR {Homo sapiens}
Probab=85.04 E-value=0.43 Score=34.55 Aligned_cols=39 Identities=18% Similarity=0.343 Sum_probs=34.2
Q ss_pred hhhhccccCeeeecccCCCCCccccccchhhhhhh-hCCCCCCC
Q psy5746 83 HHVTLLLRKLLTTCKYSMIGCPWCGPQHELKSHEE-SCAHPHKS 125 (292)
Q Consensus 83 sH~~~~C~~r~~~CkY~~~GC~W~Gp~~e~~~HE~-~C~f~~ks 125 (292)
.|+ ..|+.++|.|.. ||....+..++..|.+ .|.++..+
T Consensus 7 ~H~-~~C~~~~v~C~~---~C~~~v~r~~l~~H~~~~C~~r~v~ 46 (76)
T 2yuc_A 7 GHL-NTCSFNVIPCPN---RCPMKLSRRDLPAHLQHDCPKRRLK 46 (76)
T ss_dssp CCC-CCCCCSCCBCTT---CCSCBCCSSSSTTTTTTSCTTSCCC
T ss_pred HHH-HHCCCcccCCCc---cccHHhhHhHHHhhCHhhCCCcceE
Confidence 376 899999999975 8999999999999999 78888655
No 12
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=80.44 E-value=0.47 Score=34.33 Aligned_cols=33 Identities=24% Similarity=0.339 Sum_probs=25.1
Q ss_pred hhhccccCeeeecccCCCCCccccccchhhhhhhhCCC
Q psy5746 84 HVTLLLRKLLTTCKYSMIGCPWCGPQHELKSHEESCAH 121 (292)
Q Consensus 84 H~~~~C~~r~~~CkY~~~GC~W~Gp~~e~~~HE~~C~f 121 (292)
|+ ..|+.+++.|.+ |.......++..|..+|.-
T Consensus 35 H~-~~c~~~~~~C~~----C~~~~~~~~l~~H~~~c~~ 67 (75)
T 2d9k_A 35 HE-DYCGARTELCGN----CGRNVLVKDLKTHPEVCGR 67 (75)
T ss_dssp HH-HHHHHCEEECSS----SCCEEETTGGGTHHHHBTT
T ss_pred HH-hHcCCCceEccc----CCCcCcHHHHHHHHHHccC
Confidence 76 678888888876 7777777888888887754
No 13
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=80.17 E-value=0.53 Score=34.04 Aligned_cols=34 Identities=26% Similarity=0.375 Sum_probs=29.5
Q ss_pred hhhccccCeeeecccCCCCCccccccchhhhhhhhCCC
Q psy5746 84 HVTLLLRKLLTTCKYSMIGCPWCGPQHELKSHEESCAH 121 (292)
Q Consensus 84 H~~~~C~~r~~~CkY~~~GC~W~Gp~~e~~~HE~~C~f 121 (292)
|....|+.+++.|.| |.......++..|+..|..
T Consensus 8 H~~~~c~~r~~~C~~----C~~~~~~~~L~~H~~~c~~ 41 (75)
T 2d9k_A 8 HEETECPLRLAVCQH----CDLELSILKLKEHEDYCGA 41 (75)
T ss_dssp CCCCCCCCCCEECSS----SCCEECHHHHHHHHHHHHH
T ss_pred hCcccCCCcccCCcc----cChHhhHHHHHHHHhHcCC
Confidence 877899999999997 8888899999999977643
No 14
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=62.66 E-value=0.66 Score=33.11 Aligned_cols=30 Identities=13% Similarity=0.322 Sum_probs=21.4
Q ss_pred HHHhhccceecceeCCCCCcchh-hcchhHhH
Q psy5746 37 LEQRLGGILCCAVCLDLPRSAVY-QMQDFVMK 67 (292)
Q Consensus 37 le~~L~~ll~C~VC~dlp~p~i~-QC~~HL~C 67 (292)
..+.+...+.|++|++....|+. .|. |.+|
T Consensus 5 ~~~~~~~~~~C~IC~~~~~~p~~l~Cg-H~fC 35 (79)
T 2egp_A 5 SSGNVQEEVTCPICLELLTEPLSLDCG-HSLC 35 (79)
T ss_dssp SSCCCCCCCEETTTTEECSSCCCCSSS-CCCC
T ss_pred hHhhcccCCCCcCCCcccCCeeECCCC-CHHH
Confidence 44566778999999999877643 343 6666
No 15
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=60.80 E-value=0.82 Score=31.51 Aligned_cols=30 Identities=20% Similarity=0.439 Sum_probs=21.0
Q ss_pred HHHhhccceecceeCCCCCcch-hhcchhHhH
Q psy5746 37 LEQRLGGILCCAVCLDLPRSAV-YQMQDFVMK 67 (292)
Q Consensus 37 le~~L~~ll~C~VC~dlp~p~i-~QC~~HL~C 67 (292)
..+.+...+.|++|++....|+ +.|. |..|
T Consensus 13 ~~~~~~~~~~C~IC~~~~~~p~~~~Cg-H~fC 43 (63)
T 2ysj_A 13 FVNKLQEEVICPICLDILQKPVTIDCG-HNFC 43 (63)
T ss_dssp CCCCCCCCCBCTTTCSBCSSCEECTTS-SEEC
T ss_pred HHHhCccCCCCCcCCchhCCeEEeCCC-Ccch
Confidence 3445667899999999888764 4443 5555
No 16
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=59.92 E-value=1.7 Score=33.84 Aligned_cols=33 Identities=21% Similarity=0.322 Sum_probs=24.8
Q ss_pred hhHHHhhccceecceeCCCCCcchhhcch-hHhH
Q psy5746 35 DKLEQRLGGILCCAVCLDLPRSAVYQMQD-FVMK 67 (292)
Q Consensus 35 ~~le~~L~~ll~C~VC~dlp~p~i~QC~~-HL~C 67 (292)
....+.|...+.|++|+++...|+.-..- |..|
T Consensus 13 ~~~~~~l~~~~~C~IC~~~~~~pv~~~~CgH~fC 46 (117)
T 1jm7_B 13 RAALDRLEKLLRCSRCTNILREPVCLGGCEHIFC 46 (117)
T ss_dssp HHHHHHHHHTTSCSSSCSCCSSCBCCCSSSCCBC
T ss_pred HHHHHhchhCCCCCCCChHhhCccEeCCCCCHHH
Confidence 34556777889999999999888765333 7777
No 17
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=59.80 E-value=0.82 Score=32.19 Aligned_cols=29 Identities=21% Similarity=0.417 Sum_probs=20.5
Q ss_pred HHhhccceecceeCCCCCcchh-hcchhHhH
Q psy5746 38 EQRLGGILCCAVCLDLPRSAVY-QMQDFVMK 67 (292)
Q Consensus 38 e~~L~~ll~C~VC~dlp~p~i~-QC~~HL~C 67 (292)
.+.+...+.|++|++....|+. .|. |.+|
T Consensus 14 ~~~~~~~~~C~IC~~~~~~~~~~~Cg-H~fC 43 (73)
T 2ysl_A 14 VNKLQEEVICPICLDILQKPVTIDCG-HNFC 43 (73)
T ss_dssp CCCCCCCCBCTTTCSBCSSEEECTTC-CEEE
T ss_pred HHhCccCCEeccCCcccCCeEEcCCC-Chhh
Confidence 3456668899999998887644 343 6666
No 18
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=58.48 E-value=1.1 Score=32.01 Aligned_cols=30 Identities=13% Similarity=0.345 Sum_probs=21.0
Q ss_pred HHHhhccceecceeCCCCCcch-hhcchhHhH
Q psy5746 37 LEQRLGGILCCAVCLDLPRSAV-YQMQDFVMK 67 (292)
Q Consensus 37 le~~L~~ll~C~VC~dlp~p~i-~QC~~HL~C 67 (292)
..+.+...+.|++|++....|+ +.|. |.+|
T Consensus 12 ~~~~~~~~~~C~IC~~~~~~p~~~~Cg-H~fC 42 (85)
T 2ecv_A 12 ILVNVKEEVTCPICLELLTQPLSLDCG-HSFC 42 (85)
T ss_dssp CCCCCCCCCCCTTTCSCCSSCBCCSSS-CCBC
T ss_pred HHHHccCCCCCCCCCcccCCceeCCCC-CHHH
Confidence 3345667899999999987764 3443 6666
No 19
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.27 E-value=1.4 Score=29.48 Aligned_cols=31 Identities=19% Similarity=0.291 Sum_probs=21.3
Q ss_pred hHHHhhccceecceeCCCCCcch-hhcchhHhH
Q psy5746 36 KLEQRLGGILCCAVCLDLPRSAV-YQMQDFVMK 67 (292)
Q Consensus 36 ~le~~L~~ll~C~VC~dlp~p~i-~QC~~HL~C 67 (292)
...+.+...+.|++|++....|+ +.|. |..|
T Consensus 7 ~~~~~~~~~~~C~IC~~~~~~p~~~~Cg-H~fC 38 (58)
T 2ecj_A 7 GALENLQVEASCSVCLEYLKEPVIIECG-HNFC 38 (58)
T ss_dssp SCSSCSCCCCBCSSSCCBCSSCCCCSSC-CCCC
T ss_pred hHhhccccCCCCccCCcccCccEeCCCC-CccC
Confidence 34445667889999999988763 4443 5555
No 20
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=55.38 E-value=1.1 Score=31.90 Aligned_cols=28 Identities=18% Similarity=0.443 Sum_probs=19.7
Q ss_pred HhhccceecceeCCCCCcch-hhcchhHhH
Q psy5746 39 QRLGGILCCAVCLDLPRSAV-YQMQDFVMK 67 (292)
Q Consensus 39 ~~L~~ll~C~VC~dlp~p~i-~QC~~HL~C 67 (292)
+.+...+.|++|++....|+ ..|. |.+|
T Consensus 14 ~~~~~~~~C~IC~~~~~~p~~~~Cg-H~fC 42 (85)
T 2ecw_A 14 EMIKEEVTCPICLELLKEPVSADCN-HSFC 42 (85)
T ss_dssp CCCCTTTSCTTTCSCCSSCEECTTS-CCBC
T ss_pred HhCccCCCCcCCChhhCcceeCCCC-CHHH
Confidence 34556789999999987764 3443 6666
No 21
>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} SCOP: b.8.1.1 PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A
Probab=54.69 E-value=28 Score=27.43 Aligned_cols=52 Identities=17% Similarity=0.304 Sum_probs=36.8
Q ss_pred ceeeecceEEecC---EEEEEEEEecCCCCCCCCCcceeEEEEEEccCCCCceEEEEEE
Q psy5746 178 LFYETSRFSAFNN---QWVVKARINTCQRDPTLSSDREMTYQLILKTKTTTAMTVHFMV 233 (292)
Q Consensus 178 lfyes~rF~Af~~---qWvvkarin~~~~~p~~s~~r~l~~qL~Lks~~~~~l~v~y~~ 233 (292)
.++.|+.|.+-++ .|.+++..|.+.. .....|+.-|.+.+.+..++.+.|-+
T Consensus 29 ~~~~S~~F~~gg~~g~~W~i~~yP~G~~~----~~~~~lSlyL~l~~~~~w~v~a~f~l 83 (145)
T 3ivv_A 29 EVIKSSTFSSGANDKLKWCLRVNPKGLDE----ESKDYLSLYLLLVSCPKSEVRAKFKF 83 (145)
T ss_dssp CCEECCCEEESGGGCEEEEEEEETTCSSG----GGTTEEEEEEEEEECSSSEEEEEEEE
T ss_pred CEEECCCcCCCCcCCceEEEEEEcCCCCC----CCCCeEEEEEEEcCCCCCcEEEEEEE
Confidence 4789999999887 9999999875422 12346888888876655555555543
No 22
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.19 E-value=1.4 Score=30.73 Aligned_cols=32 Identities=9% Similarity=0.057 Sum_probs=22.3
Q ss_pred hhHHHhhccceecceeCCCCCcchh-hcchhHhH
Q psy5746 35 DKLEQRLGGILCCAVCLDLPRSAVY-QMQDFVMK 67 (292)
Q Consensus 35 ~~le~~L~~ll~C~VC~dlp~p~i~-QC~~HL~C 67 (292)
.++.+.+...+.|++|++....|+. .|. |..|
T Consensus 6 ~~~~~~~~~~~~C~IC~~~~~~p~~~~Cg-H~fC 38 (66)
T 2ecy_A 6 SGFVKTVEDKYKCEKCHLVLCSPKQTECG-HRFC 38 (66)
T ss_dssp SCSCCSCCCCEECTTTCCEESSCCCCSSS-CCCC
T ss_pred hhhhhcCCcCCCCCCCChHhcCeeECCCC-CHHH
Confidence 3444566778999999999887654 343 6666
No 23
>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A
Probab=53.80 E-value=46 Score=26.43 Aligned_cols=53 Identities=6% Similarity=0.019 Sum_probs=33.6
Q ss_pred ceeeecceEEecCEEEEEEEEecCCCCCCCCCcceeEEEEEEccCCC---CceEEEEEE
Q psy5746 178 LFYETSRFSAFNNQWVVKARINTCQRDPTLSSDREMTYQLILKTKTT---TAMTVHFMV 233 (292)
Q Consensus 178 lfyes~rF~Af~~qWvvkarin~~~~~p~~s~~r~l~~qL~Lks~~~---~~l~v~y~~ 233 (292)
.++.|+.|.+++..|.+++..+.+..+ +....|+.-|.+..... -++.+.|-+
T Consensus 33 ~~~~S~~f~~gg~~W~i~~yP~G~~~~---~~~~~lSlyL~~~~~~~~~~w~v~a~~~l 88 (155)
T 2foj_A 33 ESVLSPPCFVRNLPWKIMVMPRFYPDR---PHQKSVGFFLQCNAESDSTSWSCHAQAVL 88 (155)
T ss_dssp SCEECCCEEETTEEEEEEEEEEC---------CBEEEEEEEESTTCCCSSCEEEEEEEE
T ss_pred CceEcCCEEECCccEEEEEEECCCCCC---CCCCEEEEEEEeCCCCCCCCCEEEEEEEE
Confidence 577899999999999999998853210 12246888887754321 235555544
No 24
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=52.62 E-value=1.7 Score=35.77 Aligned_cols=29 Identities=21% Similarity=0.438 Sum_probs=20.5
Q ss_pred HhhccceecceeCCCCCcchhhcch-hHhH
Q psy5746 39 QRLGGILCCAVCLDLPRSAVYQMQD-FVMK 67 (292)
Q Consensus 39 ~~L~~ll~C~VC~dlp~p~i~QC~~-HL~C 67 (292)
+.+...+.|+||+++...|+..... |.+|
T Consensus 49 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC 78 (165)
T 2ckl_B 49 RSLHSELMCPICLDMLKNTMTTKECLHRFC 78 (165)
T ss_dssp -CCHHHHBCTTTSSBCSSEEEETTTCCEEE
T ss_pred hhCCCCCCCcccChHhhCcCEeCCCCChhH
Confidence 4556778999999999988654233 5555
No 25
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=51.52 E-value=2.8 Score=30.24 Aligned_cols=28 Identities=21% Similarity=0.415 Sum_probs=20.7
Q ss_pred HhhccceecceeCCCCCcchh-hcchhH-hH
Q psy5746 39 QRLGGILCCAVCLDLPRSAVY-QMQDFV-MK 67 (292)
Q Consensus 39 ~~L~~ll~C~VC~dlp~p~i~-QC~~HL-~C 67 (292)
+.+...+.|+||++.+..+++ .|. |. .|
T Consensus 19 ~~~~~~~~C~iC~~~~~~~~~~pCg-H~~~C 48 (74)
T 4ic3_A 19 RRLQEEKLCKICMDRNIAIVFVPCG-HLVTC 48 (74)
T ss_dssp HHHHHHTBCTTTSSSBCCEEEETTC-CBCCC
T ss_pred hcCccCCCCCCCCCCCCCEEEcCCC-ChhHH
Confidence 355567799999999998765 442 77 77
No 26
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.81 E-value=1.7 Score=31.49 Aligned_cols=27 Identities=11% Similarity=0.137 Sum_probs=18.9
Q ss_pred hhccceecceeCCCCCcch-hhcchhHhH
Q psy5746 40 RLGGILCCAVCLDLPRSAV-YQMQDFVMK 67 (292)
Q Consensus 40 ~L~~ll~C~VC~dlp~p~i-~QC~~HL~C 67 (292)
.+...+.|++|++....|+ ..|. |.+|
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~Cg-H~fC 38 (81)
T 2csy_A 11 EEEIPFRCFICRQAFQNPVVTKCR-HYFC 38 (81)
T ss_dssp CCCCCSBCSSSCSBCCSEEECTTS-CEEE
T ss_pred cCCCCCCCcCCCchhcCeeEccCC-CHhH
Confidence 3455789999999988764 4443 5555
No 27
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=50.81 E-value=5.7 Score=32.70 Aligned_cols=30 Identities=17% Similarity=0.292 Sum_probs=21.5
Q ss_pred HHHhhccceecceeCCCCCcchh-hcchhHhH
Q psy5746 37 LEQRLGGILCCAVCLDLPRSAVY-QMQDFVMK 67 (292)
Q Consensus 37 le~~L~~ll~C~VC~dlp~p~i~-QC~~HL~C 67 (292)
..+.+...+.|++|+++...|+. .|. |..|
T Consensus 71 ~~~~l~~~~~C~IC~~~~~~pv~~~Cg-H~fC 101 (150)
T 1z6u_A 71 FLKKLEQSFMCVCCQELVYQPVTTECF-HNVC 101 (150)
T ss_dssp HHHHHHHHTBCTTTSSBCSSEEECTTS-CEEE
T ss_pred HHHhCccCCEeecCChhhcCCEEcCCC-Cchh
Confidence 34456678999999999887754 343 6666
No 28
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=49.40 E-value=2.8 Score=31.68 Aligned_cols=31 Identities=23% Similarity=0.519 Sum_probs=21.8
Q ss_pred hHHHhhccceecceeCCCCCcchh-hcchhHhH
Q psy5746 36 KLEQRLGGILCCAVCLDLPRSAVY-QMQDFVMK 67 (292)
Q Consensus 36 ~le~~L~~ll~C~VC~dlp~p~i~-QC~~HL~C 67 (292)
...+.+...+.|++|++....|+. .|. |..|
T Consensus 13 ~~~~~~~~~~~C~IC~~~~~~p~~~~Cg-H~fC 44 (112)
T 1jm7_A 13 NVINAMQKILECPICLELIKEPVSTKCD-HIFC 44 (112)
T ss_dssp HHHHHHHHHTSCSSSCCCCSSCCBCTTS-CCCC
T ss_pred HHHHhccCCCCCcccChhhcCeEECCCC-CHHH
Confidence 344566678899999998877644 332 7777
No 29
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.26 E-value=2.8 Score=29.69 Aligned_cols=29 Identities=14% Similarity=0.196 Sum_probs=20.7
Q ss_pred HhhccceecceeCCCCCcchh--hcch--hHhH
Q psy5746 39 QRLGGILCCAVCLDLPRSAVY--QMQD--FVMK 67 (292)
Q Consensus 39 ~~L~~ll~C~VC~dlp~p~i~--QC~~--HL~C 67 (292)
+.+...+.|++|++....|+. .|.+ |.-|
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~C 42 (72)
T 2djb_A 10 SELTPYILCSICKGYLIDATTITECLHTFCKSC 42 (72)
T ss_dssp CCCCGGGSCTTTSSCCSSCEECSSSCCEECHHH
T ss_pred hhcCCCCCCCCCChHHHCcCEECCCCCHHHHHH
Confidence 345567899999999987653 6765 4555
No 30
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.40 E-value=2.8 Score=30.21 Aligned_cols=29 Identities=14% Similarity=0.313 Sum_probs=20.1
Q ss_pred HhhccceecceeCCCCCc-----chhhcch--hHhH
Q psy5746 39 QRLGGILCCAVCLDLPRS-----AVYQMQD--FVMK 67 (292)
Q Consensus 39 ~~L~~ll~C~VC~dlp~p-----~i~QC~~--HL~C 67 (292)
+.+...+.|++|++.... -++.|.+ |.-|
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~C 45 (88)
T 2ct2_A 10 DALREVLECPICMESFTEEQLRPKLLHCGHTICRQC 45 (88)
T ss_dssp CCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHH
T ss_pred hhccCCCCCccCCccccccCCCeEECCCCChhhHHH
Confidence 455668899999998764 3556754 4444
No 31
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=47.11 E-value=5.2 Score=31.20 Aligned_cols=31 Identities=13% Similarity=0.212 Sum_probs=23.0
Q ss_pred hHHHhhccceecceeCCCCCcch-hhcchhHhH
Q psy5746 36 KLEQRLGGILCCAVCLDLPRSAV-YQMQDFVMK 67 (292)
Q Consensus 36 ~le~~L~~ll~C~VC~dlp~p~i-~QC~~HL~C 67 (292)
++-+.+...+.|++|+++...|+ ..|. |..|
T Consensus 44 ~~~~~~~~~~~C~IC~~~~~~p~~~~Cg-H~fC 75 (124)
T 3fl2_A 44 LFLSKVEETFQCICCQELVFRPITTVCQ-HNVC 75 (124)
T ss_dssp HHHHHHHHHTBCTTTSSBCSSEEECTTS-CEEE
T ss_pred HHHHhCccCCCCCcCChHHcCcEEeeCC-Cccc
Confidence 45567777899999999998875 4453 6666
No 32
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.82 E-value=5.6 Score=28.53 Aligned_cols=28 Identities=21% Similarity=0.415 Sum_probs=20.4
Q ss_pred HhhccceecceeCCCCCcchh-hcchhH-hH
Q psy5746 39 QRLGGILCCAVCLDLPRSAVY-QMQDFV-MK 67 (292)
Q Consensus 39 ~~L~~ll~C~VC~dlp~p~i~-QC~~HL-~C 67 (292)
+++...+.|++|++.+..+++ .|. |. +|
T Consensus 20 ~~~~~~~~C~IC~~~~~~~~~~pCg-H~~~C 49 (75)
T 2ecg_A 20 RRLQEEKLCKICMDRNIAIVFVPCG-HLVTC 49 (75)
T ss_dssp HHHHHHHSCSSSCSSCCCBCCSSSC-CCCBC
T ss_pred HcCCCCCCCCcCCCCCCCEEEecCC-CHHHH
Confidence 344556789999999988765 453 66 77
No 33
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=46.13 E-value=5.3 Score=30.28 Aligned_cols=33 Identities=12% Similarity=0.331 Sum_probs=23.4
Q ss_pred hhhHHHhhccceecceeCCCCCcchh--hcchhHhH
Q psy5746 34 ADKLEQRLGGILCCAVCLDLPRSAVY--QMQDFVMK 67 (292)
Q Consensus 34 ~~~le~~L~~ll~C~VC~dlp~p~i~--QC~~HL~C 67 (292)
.....+.|...+.|++|+++...|+. .|. |..|
T Consensus 12 ~~~~~~~l~~~~~C~IC~~~~~~p~~~~~Cg-H~FC 46 (100)
T 3lrq_A 12 DEQSVESIAEVFRCFICMEKLRDARLCPHCS-KLCC 46 (100)
T ss_dssp HHHHHHHHHHHTBCTTTCSBCSSEEECTTTC-CEEE
T ss_pred cccccccCCCCCCCccCCccccCccccCCCC-Chhh
Confidence 33444567778899999999988754 443 5555
No 34
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=42.06 E-value=2 Score=31.67 Aligned_cols=29 Identities=21% Similarity=0.197 Sum_probs=20.4
Q ss_pred HhhccceecceeCCCCCcchhhcch-hHhH
Q psy5746 39 QRLGGILCCAVCLDLPRSAVYQMQD-FVMK 67 (292)
Q Consensus 39 ~~L~~ll~C~VC~dlp~p~i~QC~~-HL~C 67 (292)
+.+...+.|++|+++...|+.--.- |.+|
T Consensus 8 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC 37 (92)
T 3ztg_A 8 DPIPDELLCLICKDIMTDAVVIPCCGNSYC 37 (92)
T ss_dssp CCCCTTTEETTTTEECSSCEECTTTCCEEC
T ss_pred ccCCcCCCCCCCChhhcCceECCCCCCHHH
Confidence 3556678999999998877543113 7777
No 35
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.99 E-value=5.8 Score=27.58 Aligned_cols=28 Identities=14% Similarity=0.230 Sum_probs=20.7
Q ss_pred hhccceecceeCCCCCcchhhcch--hHhH
Q psy5746 40 RLGGILCCAVCLDLPRSAVYQMQD--FVMK 67 (292)
Q Consensus 40 ~L~~ll~C~VC~dlp~p~i~QC~~--HL~C 67 (292)
.+...+.|++|++.....++.|.+ |.-|
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~CgH~fc~~C 40 (70)
T 2ecn_A 11 QLTDEEECCICMDGRADLILPCAHSFCQKC 40 (70)
T ss_dssp CCCCCCCCSSSCCSCCSEEETTTEEECHHH
T ss_pred cCCCCCCCeeCCcCccCcccCCCCcccHHH
Confidence 345578999999998886667765 5555
No 36
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=41.98 E-value=5.2 Score=32.01 Aligned_cols=33 Identities=18% Similarity=0.265 Sum_probs=23.1
Q ss_pred hhhHHHhhccceecceeCCCCCcchh-hcchhHhH
Q psy5746 34 ADKLEQRLGGILCCAVCLDLPRSAVY-QMQDFVMK 67 (292)
Q Consensus 34 ~~~le~~L~~ll~C~VC~dlp~p~i~-QC~~HL~C 67 (292)
...+.+.+...+.|++|+++...|+. .|. |.+|
T Consensus 43 ~~~~~~~~~~~~~C~iC~~~~~~~~~~~Cg-H~fc 76 (138)
T 4ayc_A 43 LSHMNDVLENELQCIICSEYFIEAVTLNCA-HSFC 76 (138)
T ss_dssp HHHHHHHHHHHSBCTTTCSBCSSEEEETTS-CEEE
T ss_pred HHHHHHhccccCCCcccCcccCCceECCCC-CCcc
Confidence 34455666677899999999887653 443 6666
No 37
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=41.48 E-value=2.9 Score=31.04 Aligned_cols=27 Identities=7% Similarity=0.300 Sum_probs=19.1
Q ss_pred hccceecceeCCCCC-c--chhhcch-hHhH
Q psy5746 41 LGGILCCAVCLDLPR-S--AVYQMQD-FVMK 67 (292)
Q Consensus 41 L~~ll~C~VC~dlp~-p--~i~QC~~-HL~C 67 (292)
+...+.||||++.+. + .++.|.- |.+|
T Consensus 8 ~~~~~~CpICle~~~~~d~~~~p~~CGH~fC 38 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDINFFPCTCGYQIC 38 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTTTCCSSTTSCCCC
T ss_pred cccCCcCCccCccCccccccccccCCCCCcC
Confidence 456788999999653 2 3556656 8888
No 38
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=40.78 E-value=8.5 Score=29.23 Aligned_cols=28 Identities=18% Similarity=0.197 Sum_probs=20.7
Q ss_pred HhhccceecceeCCCCCcchh--hcchhHhH
Q psy5746 39 QRLGGILCCAVCLDLPRSAVY--QMQDFVMK 67 (292)
Q Consensus 39 ~~L~~ll~C~VC~dlp~p~i~--QC~~HL~C 67 (292)
+.+...+.|++|+++...|+. .|. |..|
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~~Cg-H~fC 39 (108)
T 2ckl_A 10 TELNPHLMCVLCGGYFIDATTIIECL-HSFC 39 (108)
T ss_dssp HHHGGGTBCTTTSSBCSSEEEETTTC-CEEE
T ss_pred hccCCcCCCccCChHHhCcCEeCCCC-Chhh
Confidence 456678899999999988765 454 5555
No 39
>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=39.89 E-value=1.1e+02 Score=26.07 Aligned_cols=41 Identities=7% Similarity=0.065 Sum_probs=30.1
Q ss_pred ceeeecceEEe--cCEEEEEEEEecCCCCCCCCCcceeEEEEEEccC
Q psy5746 178 LFYETSRFSAF--NNQWVVKARINTCQRDPTLSSDREMTYQLILKTK 222 (292)
Q Consensus 178 lfyes~rF~Af--~~qWvvkarin~~~~~p~~s~~r~l~~qL~Lks~ 222 (292)
.++.|+.|.+= +..|.+++..|.+.. +....|+.-|.|-+.
T Consensus 62 ~~i~S~~F~vg~~Gy~W~i~~yPnG~~~----~~~~~lSlyL~l~~g 104 (198)
T 4ghu_A 62 LSLYSQPFYTGYFGYKMCARVYLNGDGM----GKGTHLSLFFVIMRG 104 (198)
T ss_dssp CCEECCCEESSTTSCEEEEEEETTCCGG----GTTTEEEEEEEEECC
T ss_pred cEEECCCeEECCCCcEEEEEEEeCCCCC----CCCCeEEEEEEecCC
Confidence 57899999999 999999999885422 112457777777643
No 40
>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A
Probab=39.42 E-value=32 Score=28.73 Aligned_cols=40 Identities=5% Similarity=0.122 Sum_probs=29.7
Q ss_pred eeeecceEE--ecCEEEEEEEEecCCCCCCCCCcceeEEEEEEccC
Q psy5746 179 FYETSRFSA--FNNQWVVKARINTCQRDPTLSSDREMTYQLILKTK 222 (292)
Q Consensus 179 fyes~rF~A--f~~qWvvkarin~~~~~p~~s~~r~l~~qL~Lks~ 222 (292)
++.|+.|.+ .|..|.+++..|.+.. +....|+.-|.|-+.
T Consensus 66 ~i~S~~F~v~~gG~~W~i~~yP~G~~~----~~~~~lSlyL~l~~~ 107 (192)
T 1ca9_A 66 AIFSPAFYTSRYGYKMCLRIYLNGDGT----GRGTHLSLFFVVMKG 107 (192)
T ss_dssp CEECCCEESSTTSCEEEEEEETTCCGG----GTTTEEEEEEEEECC
T ss_pred eEECceEEeCCCCeEEEEEEEeCCCCC----CCCCEEEEEEEEccC
Confidence 689999999 9999999999875321 112458877777554
No 41
>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A 1lb4_A
Probab=39.25 E-value=89 Score=24.94 Aligned_cols=54 Identities=6% Similarity=0.018 Sum_probs=36.9
Q ss_pred eeeecceEEe--cCEEEEEEEEecCCCCCCCCCcceeEEEEEEccCCC-------CceEEEEEEEe
Q psy5746 179 FYETSRFSAF--NNQWVVKARINTCQRDPTLSSDREMTYQLILKTKTT-------TAMTVHFMVLR 235 (292)
Q Consensus 179 fyes~rF~Af--~~qWvvkarin~~~~~p~~s~~r~l~~qL~Lks~~~-------~~l~v~y~~l~ 235 (292)
++.|+.|.+= +..|.+++..|.+.. ..+...|+.-|.|-+... -...+++.|++
T Consensus 28 ~i~S~~F~vg~~Gy~w~i~~yP~G~~~---~~~~~~lSlyL~l~~~~~d~~l~wp~~a~~~l~lld 90 (160)
T 1lb6_A 28 VIHSPGFYTGKPGYKLCMRLHLQLPTA---QRCANYISLFVHTMQGEYDSHLPWPFQGTIRLTILD 90 (160)
T ss_dssp EEECCCEESSSSCCEEEEEEEECCTTC---TTTTTEEEEEEEEECCTTGGGSCSSCCSEEEEEECC
T ss_pred EEECcCeecCCCCeeEEEEEEecCCCC---CCCCCEEEEEEEEeecCCCccCCCceeeeEEEEEEc
Confidence 7899999998 999999999985321 112246887777754432 23366667775
No 42
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=34.35 E-value=58 Score=28.67 Aligned_cols=52 Identities=17% Similarity=0.312 Sum_probs=32.2
Q ss_pred cceeeecceEEecC---EEEEEEEEecCCCCCCCCCcceeEEEEEEccCCCCceEEEEE
Q psy5746 177 KLFYETSRFSAFNN---QWVVKARINTCQRDPTLSSDREMTYQLILKTKTTTAMTVHFM 232 (292)
Q Consensus 177 ~lfyes~rF~Af~~---qWvvkarin~~~~~p~~s~~r~l~~qL~Lks~~~~~l~v~y~ 232 (292)
..++.|+.|.+-++ .|.+++..|....+ ....|+.-|.+.+.+..++...|-
T Consensus 24 ~~~i~S~~F~~gg~~~~~W~i~~yP~G~~~~----~~~~lslyL~~~~~~~~~v~a~~~ 78 (312)
T 3hqi_A 24 GEVIKSSTFSSGANDKLKWCLRVNPKGLDEE----SKDYLSLYLLLVSCPKSEVRAKFK 78 (312)
T ss_dssp TCCEECCCBCC--CCCCEEEEEEETTCCC------CTTEEEEEEEEEECCC-CEEEEEE
T ss_pred CCeEeeCCcccCCCCCceEEEEEECCCCCcc----CCCcEEEEEEEcCCCCCcEEEEEE
Confidence 45789999999886 99999998754221 123577777776655555555443
No 43
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.86 E-value=4.2 Score=27.84 Aligned_cols=28 Identities=18% Similarity=0.335 Sum_probs=19.6
Q ss_pred hhccceecceeCCCCCcc--------hhhcch--hHhH
Q psy5746 40 RLGGILCCAVCLDLPRSA--------VYQMQD--FVMK 67 (292)
Q Consensus 40 ~L~~ll~C~VC~dlp~p~--------i~QC~~--HL~C 67 (292)
.+...+.|++|++....+ +..|.+ |.-|
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~C 48 (69)
T 2ea6_A 11 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQC 48 (69)
T ss_dssp CTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHH
T ss_pred CCCCCCCCcccCccccccccccCCeEeCCCCChhcHHH
Confidence 445678999999987654 456765 5555
No 44
>3ukx_C Bimax2 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; 2.20A {Mus musculus}
Probab=32.52 E-value=5.4 Score=24.83 Aligned_cols=15 Identities=20% Similarity=0.563 Sum_probs=11.2
Q ss_pred CCCCCCCchHHHHhh
Q psy5746 13 NQIETEEPEAKKRKI 27 (292)
Q Consensus 13 ~~~~~~~~~~k~~~~ 27 (292)
|-.|++.|++||+++
T Consensus 13 ewdddddppkkrrrl 27 (28)
T 3ukx_C 13 EWDDDDDPPKKRRRL 27 (28)
T ss_dssp CCCCSSSCCSCCCCC
T ss_pred ccccCCCchhhhhcc
Confidence 456788888888765
No 45
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=32.38 E-value=13 Score=27.63 Aligned_cols=29 Identities=17% Similarity=0.379 Sum_probs=20.5
Q ss_pred HHhhccceecceeCCCCCcchh--hcchhHhH
Q psy5746 38 EQRLGGILCCAVCLDLPRSAVY--QMQDFVMK 67 (292)
Q Consensus 38 e~~L~~ll~C~VC~dlp~p~i~--QC~~HL~C 67 (292)
.+.+...+.|++|++....|+. .|. |..|
T Consensus 16 ~~~~~~~~~C~IC~~~~~~p~~~~~Cg-H~fC 46 (99)
T 2y43_A 16 MKTIDDLLRCGICFEYFNIAMIIPQCS-HNYC 46 (99)
T ss_dssp GHHHHHHTBCTTTCSBCSSEEECTTTC-CEEE
T ss_pred HHhCCCCCCcccCChhhCCcCEECCCC-CHhh
Confidence 3455667899999999888754 454 5445
No 46
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=29.75 E-value=7.4 Score=26.84 Aligned_cols=27 Identities=15% Similarity=0.289 Sum_probs=18.6
Q ss_pred hccceecceeCCCCCcc--------hhhcch--hHhH
Q psy5746 41 LGGILCCAVCLDLPRSA--------VYQMQD--FVMK 67 (292)
Q Consensus 41 L~~ll~C~VC~dlp~p~--------i~QC~~--HL~C 67 (292)
..+.+.|++|++....+ +..|.+ |.-|
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~C 43 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQC 43 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHH
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHH
Confidence 34568899999987654 455655 5555
No 47
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=28.68 E-value=11 Score=27.69 Aligned_cols=28 Identities=14% Similarity=0.323 Sum_probs=20.4
Q ss_pred HhhccceecceeCCCCCcchhh-cchhH-hH
Q psy5746 39 QRLGGILCCAVCLDLPRSAVYQ-MQDFV-MK 67 (292)
Q Consensus 39 ~~L~~ll~C~VC~dlp~p~i~Q-C~~HL-~C 67 (292)
+.|.....|+||++.+..+++. |. |. +|
T Consensus 13 ~~l~~~~~C~IC~~~~~~~v~~pCg-H~~~C 42 (79)
T 2yho_A 13 RKLKEAMLCMVCCEEEINSTFCPCG-HTVCC 42 (79)
T ss_dssp HHHHHHTBCTTTSSSBCCEEEETTC-BCCBC
T ss_pred HcCCCCCEeEEeCcccCcEEEECCC-CHHHH
Confidence 3455667899999999887654 43 66 67
No 48
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=27.92 E-value=9 Score=25.69 Aligned_cols=25 Identities=12% Similarity=0.297 Sum_probs=17.3
Q ss_pred cceecceeCCCCCcc--------hhhcch--hHhH
Q psy5746 43 GILCCAVCLDLPRSA--------VYQMQD--FVMK 67 (292)
Q Consensus 43 ~ll~C~VC~dlp~p~--------i~QC~~--HL~C 67 (292)
+.+.|++|++....+ +..|.+ |.-|
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~C 36 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQC 36 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHH
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHH
Confidence 467899999987654 455655 5555
No 49
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=27.45 E-value=5.5 Score=28.29 Aligned_cols=27 Identities=15% Similarity=0.319 Sum_probs=19.9
Q ss_pred hhccceecceeCCCCCcchhhcch-hHhH
Q psy5746 40 RLGGILCCAVCLDLPRSAVYQMQD-FVMK 67 (292)
Q Consensus 40 ~L~~ll~C~VC~dlp~p~i~QC~~-HL~C 67 (292)
.+.+.+.||+|+++...|+.- .. |..|
T Consensus 4 ~~~~~~~C~IC~~~~~~Pv~~-~CgH~fc 31 (78)
T 1t1h_A 4 EFPEYFRCPISLELMKDPVIV-STGQTYE 31 (78)
T ss_dssp CCSSSSSCTTTSCCCSSEEEE-TTTEEEE
T ss_pred CCcccCCCCCccccccCCEEc-CCCCeec
Confidence 356688999999998887542 34 7777
No 50
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=25.67 E-value=6.7 Score=27.90 Aligned_cols=27 Identities=22% Similarity=0.296 Sum_probs=19.3
Q ss_pred hhccceecceeCCCCCcchh-h-cchhHhH
Q psy5746 40 RLGGILCCAVCLDLPRSAVY-Q-MQDFVMK 67 (292)
Q Consensus 40 ~L~~ll~C~VC~dlp~p~i~-Q-C~~HL~C 67 (292)
.+...+.|++|+++...|+. . |. |..|
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~~Cg-H~fC 39 (74)
T 2yur_A 11 PIPDELLCLICKDIMTDAVVIPCCG-NSYC 39 (74)
T ss_dssp CSCGGGSCSSSCCCCTTCEECSSSC-CEEC
T ss_pred cCCCCCCCcCCChHHhCCeEcCCCC-CHHH
Confidence 45567899999999888754 3 43 6666
No 51
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=25.41 E-value=92 Score=29.82 Aligned_cols=41 Identities=7% Similarity=0.029 Sum_probs=27.7
Q ss_pred eeeecceEEecCEEEEEEEEecCCCCCCCCCcceeEEEEEEccC
Q psy5746 179 FYETSRFSAFNNQWVVKARINTCQRDPTLSSDREMTYQLILKTK 222 (292)
Q Consensus 179 fyes~rF~Af~~qWvvkarin~~~~~p~~s~~r~l~~qL~Lks~ 222 (292)
++.|+.|.+.|..|.+++..+.+.. .+....|+.-|.+...
T Consensus 46 ~~~S~~F~vgg~~W~i~~yP~G~~~---~~~~~~lSlyL~~~~~ 86 (522)
T 2f1z_A 46 SVLSPPCFVRNLPWKIMVMPRFYPD---RPHQKSVGFFLQCNAE 86 (522)
T ss_dssp CEECCCEEETTEEEEEEECBC-----------CBBCEEEEESTT
T ss_pred ceeCCCEEECCEeeEEEEEeCCCCC---CCCCCeEEEEEEecCC
Confidence 7889999999999999998874321 1122457777777554
No 52
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=25.33 E-value=14 Score=27.25 Aligned_cols=28 Identities=21% Similarity=0.451 Sum_probs=19.0
Q ss_pred HHHhhccceecceeCCCCCcchhhcch-hHhH
Q psy5746 37 LEQRLGGILCCAVCLDLPRSAVYQMQD-FVMK 67 (292)
Q Consensus 37 le~~L~~ll~C~VC~dlp~p~i~QC~~-HL~C 67 (292)
+..+|..++.||+|.. ++. |.=.. -|+|
T Consensus 3 md~~LLeiL~CP~ck~-~L~--~~~~~g~LvC 31 (67)
T 2jny_A 3 LDPQLLEVLACPKDKG-PLR--YLESEQLLVN 31 (67)
T ss_dssp SCGGGTCCCBCTTTCC-BCE--EETTTTEEEE
T ss_pred CCHHHHHHhCCCCCCC-cCe--EeCCCCEEEc
Confidence 4567889999999998 332 11124 6777
No 53
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=24.76 E-value=18 Score=34.00 Aligned_cols=31 Identities=26% Similarity=0.409 Sum_probs=22.9
Q ss_pred hHHHhhccceecceeCCCCCcchh-hcchhH-hH
Q psy5746 36 KLEQRLGGILCCAVCLDLPRSAVY-QMQDFV-MK 67 (292)
Q Consensus 36 ~le~~L~~ll~C~VC~dlp~p~i~-QC~~HL-~C 67 (292)
..-+.|...+.|+||++.+..+++ -|. |. .|
T Consensus 287 ~~~~~l~~~~~C~IC~~~~~~~v~lpCg-H~~fC 319 (345)
T 3t6p_A 287 EQLRRLQEERTCKVCMDKEVSVVFIPCG-HLVVC 319 (345)
T ss_dssp HHHHHHHTTCBCTTTSSSBCCEEEETTC-CEEEC
T ss_pred HHHHhCcCCCCCCccCCcCCceEEcCCC-ChhHh
Confidence 334566677999999999998765 453 66 77
No 54
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=24.27 E-value=10 Score=26.77 Aligned_cols=29 Identities=17% Similarity=0.196 Sum_probs=18.5
Q ss_pred HhhccceecceeCCCCCcc----hhhcch--hHhH
Q psy5746 39 QRLGGILCCAVCLDLPRSA----VYQMQD--FVMK 67 (292)
Q Consensus 39 ~~L~~ll~C~VC~dlp~p~----i~QC~~--HL~C 67 (292)
+.+.+.+.|++|++....+ ++.|.+ |.-|
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~C 44 (78)
T 2ect_A 10 EHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSC 44 (78)
T ss_dssp TTSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTT
T ss_pred ccCCCCCCCeeCCccccCCCCEEEeCCCCeecHHH
Confidence 3445678999998875432 346765 5555
No 55
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=23.85 E-value=9.5 Score=29.21 Aligned_cols=24 Identities=13% Similarity=0.387 Sum_probs=17.4
Q ss_pred cceecceeCCCCCcch-hhcchhHhH
Q psy5746 43 GILCCAVCLDLPRSAV-YQMQDFVMK 67 (292)
Q Consensus 43 ~ll~C~VC~dlp~p~i-~QC~~HL~C 67 (292)
..+.|++|+++...|+ +.|. |.+|
T Consensus 14 ~~~~C~iC~~~~~~p~~~~Cg-H~fC 38 (115)
T 3l11_A 14 SECQCGICMEILVEPVTLPCN-HTLC 38 (115)
T ss_dssp HHHBCTTTCSBCSSCEECTTS-CEEC
T ss_pred CCCCCccCCcccCceeEcCCC-CHHh
Confidence 3578999999988765 4443 6666
No 56
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=22.78 E-value=3.3e+02 Score=22.58 Aligned_cols=53 Identities=8% Similarity=0.077 Sum_probs=36.3
Q ss_pred eeeecceEEe--cCEEEEEEEEecCCCCCCCCCcceeEEEEEEccCCC-------CceEEEEEEEe
Q psy5746 179 FYETSRFSAF--NNQWVVKARINTCQRDPTLSSDREMTYQLILKTKTT-------TAMTVHFMVLR 235 (292)
Q Consensus 179 fyes~rF~Af--~~qWvvkarin~~~~~p~~s~~r~l~~qL~Lks~~~-------~~l~v~y~~l~ 235 (292)
++.|+.|.+- +..|.+++..|.+.. +....|+.-|.|-+... -.-.+++.|++
T Consensus 63 ~i~S~~F~vg~~Gykw~i~~yPnG~~~----~~~~~lSlyL~l~~~~~d~~l~wp~~a~~~l~lld 124 (192)
T 2gkw_A 63 SLYSQPFYTGYFGYKMCARVYLNGDGM----GKGTHLSLFFVIMRGEYDALLPWPFKQKVTLMLMD 124 (192)
T ss_dssp CEECCCEESSTTSCEEEEEEETTCCGG----GTTTEEEEEEEEECCTTGGGSCSSCCCCEEEEECC
T ss_pred eEEcccEEECCCCcEEEEEEEeCCCCC----CCCCEEEEEEEEecCCCCccCCCcEEEEEEEEEEC
Confidence 6889999998 899999999885421 12346888787754432 12456667765
No 57
>4gjh_A TNF receptor-associated factor 5; TRAF domain, immune system; 2.81A {Mus musculus}
Probab=22.67 E-value=1.3e+02 Score=24.74 Aligned_cols=53 Identities=11% Similarity=0.105 Sum_probs=35.5
Q ss_pred eeeecceEEe--cCEEEEEEEEecCCCCCCCCCcceeEEEEEEccCCC-------CceEEEEEEEe
Q psy5746 179 FYETSRFSAF--NNQWVVKARINTCQRDPTLSSDREMTYQLILKTKTT-------TAMTVHFMVLR 235 (292)
Q Consensus 179 fyes~rF~Af--~~qWvvkarin~~~~~p~~s~~r~l~~qL~Lks~~~-------~~l~v~y~~l~ 235 (292)
++.|+.|.+= |..|.+++..|.+.. .....|+.-|.|.+... -.-.+++.|+.
T Consensus 47 ~i~S~~F~~g~~G~~W~i~~yP~G~~~----~~~~~lSlyL~l~~~~~d~~l~W~v~a~~~l~Lld 108 (178)
T 4gjh_A 47 SVFSQPFYTSRCGYRLCARAYLNGDGS----GKGTHLSLYFVVMRGEFDSLLQWPFRQRVTLMLLD 108 (178)
T ss_dssp CEECCCEESSTTSCEEEEEEETTCCGG----GTTTEEEEEEEEBCCTTGGGSCSSCCCEEEEEECC
T ss_pred EEECCCeEeCCCCeEEEEEEEECCCCC----CCCCEEEEEEEEecCCCCcccCCceEEEEEEEEEc
Confidence 7899999999 999999999885421 11246887788754432 22345555554
No 58
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=22.52 E-value=8.9 Score=28.44 Aligned_cols=29 Identities=14% Similarity=-0.062 Sum_probs=22.4
Q ss_pred HhhccceecceeCCCCCcchhhcchhHhH
Q psy5746 39 QRLGGILCCAVCLDLPRSAVYQMQDFVMK 67 (292)
Q Consensus 39 ~~L~~ll~C~VC~dlp~p~i~QC~~HL~C 67 (292)
..+...|.||+|+++..-|+.--..|.+|
T Consensus 9 ~~~p~~~~CpI~~~~m~dPV~~~cGhtf~ 37 (85)
T 2kr4_A 9 SDAPDEFRDPLMDTLMTDPVRLPSGTVMD 37 (85)
T ss_dssp TTCCTTTBCTTTCSBCSSEEECTTSCEEE
T ss_pred hcCchheECcccCchhcCCeECCCCCEEC
Confidence 45677899999999999887643228877
No 59
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.36 E-value=26 Score=24.34 Aligned_cols=24 Identities=21% Similarity=0.353 Sum_probs=16.8
Q ss_pred cceecceeCCCCCcc-hhhcchhHhH
Q psy5746 43 GILCCAVCLDLPRSA-VYQMQDFVMK 67 (292)
Q Consensus 43 ~ll~C~VC~dlp~p~-i~QC~~HL~C 67 (292)
..+.|++|++....+ ++.|. |.+|
T Consensus 14 ~~~~C~IC~~~~~~~~~~~Cg-H~fC 38 (71)
T 2d8t_A 14 TVPECAICLQTCVHPVSLPCK-HVFC 38 (71)
T ss_dssp SCCBCSSSSSBCSSEEEETTT-EEEE
T ss_pred CCCCCccCCcccCCCEEccCC-CHHH
Confidence 357899999998775 34554 4444
No 60
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=22.03 E-value=17 Score=27.19 Aligned_cols=25 Identities=16% Similarity=0.196 Sum_probs=20.5
Q ss_pred cceecceeCC-CCCcchhhcch--hHhH
Q psy5746 43 GILCCAVCLD-LPRSAVYQMQD--FVMK 67 (292)
Q Consensus 43 ~ll~C~VC~d-lp~p~i~QC~~--HL~C 67 (292)
+.+.|++|.+ +..+|+..|.. |-+|
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C 29 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYC 29 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEEC
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHh
Confidence 3467999995 57889988887 8889
No 61
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=21.39 E-value=9 Score=29.43 Aligned_cols=30 Identities=7% Similarity=-0.107 Sum_probs=22.8
Q ss_pred HHhhccceecceeCCCCCcchhhcch-hHhH
Q psy5746 38 EQRLGGILCCAVCLDLPRSAVYQMQD-FVMK 67 (292)
Q Consensus 38 e~~L~~ll~C~VC~dlp~p~i~QC~~-HL~C 67 (292)
...+...|.||+|+++..-|+.--.. |.+|
T Consensus 16 ~~~~p~~~~CpI~~~~m~dPV~~~cG~htf~ 46 (98)
T 1wgm_A 16 YADACDEFLDPIMSTLMCDPVVLPSSRVTVD 46 (98)
T ss_dssp CCSCCTTTBCTTTCSBCSSEEECTTTCCEEE
T ss_pred hhcCcHhcCCcCccccccCCeECCCCCeEEC
Confidence 34566789999999999988754334 8887
No 62
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=21.11 E-value=24 Score=26.07 Aligned_cols=27 Identities=15% Similarity=0.357 Sum_probs=18.4
Q ss_pred hccceecceeCCCCCc----chhhcch--hHhH
Q psy5746 41 LGGILCCAVCLDLPRS----AVYQMQD--FVMK 67 (292)
Q Consensus 41 L~~ll~C~VC~dlp~p----~i~QC~~--HL~C 67 (292)
......|++|++.... .++.|.+ |.-|
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~C 69 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVATELPCHHYFHKPC 69 (91)
T ss_dssp SSSCSEETTTTEECCTTCEEEEETTTEEEEHHH
T ss_pred cCCCCCCcccChhhcCCCcEEecCCCChHHHHH
Confidence 3456789999976543 3456776 6667
No 63
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=20.67 E-value=20 Score=26.57 Aligned_cols=15 Identities=33% Similarity=0.844 Sum_probs=12.1
Q ss_pred HHhhccceecceeCC
Q psy5746 38 EQRLGGILCCAVCLD 52 (292)
Q Consensus 38 e~~L~~ll~C~VC~d 52 (292)
..+|..++.||+|..
T Consensus 2 d~~LLeiL~CP~ck~ 16 (69)
T 2pk7_A 2 DTKLLDILACPICKG 16 (69)
T ss_dssp -CCGGGTCCCTTTCC
T ss_pred ChHHHhheeCCCCCC
Confidence 346788999999996
No 64
>2k5r_A Uncharacterized protein XF2673; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Xylella fastidiosa TEMECULA1}
Probab=20.34 E-value=19 Score=28.60 Aligned_cols=18 Identities=28% Similarity=0.495 Sum_probs=14.1
Q ss_pred HHhhccceecceeCCCCCc
Q psy5746 38 EQRLGGILCCAVCLDLPRS 56 (292)
Q Consensus 38 e~~L~~ll~C~VC~dlp~p 56 (292)
..+|..++.||+|.. |+.
T Consensus 2 d~~LLdILaCP~cK~-pL~ 19 (97)
T 2k5r_A 2 DRKLLHLLCSPDTRQ-PLS 19 (97)
T ss_dssp CTTTCSSCCCCTTSS-CCE
T ss_pred ChHHhhheECCCCCC-ccc
Confidence 356888999999997 543
Done!