RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5746
(292 letters)
>2a25_A Ubiquitin ligase SIAH1; protein-peptide complex, ligase; 2.20A
{Homo sapiens} PDB: 2an6_A 1k2f_A
Length = 193
Score = 36.7 bits (84), Expect = 0.004
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 88 LLRKLLTTCKYSMIGCPWCGPQHELKSHEESCAH 121
+ +L CKY+ GC P E HEE C
Sbjct: 1 VANSVLFPCKYASSGCEITLPHTEKADHEELCEF 34
Score = 29.0 bits (64), Expect = 1.3
Identities = 9/32 (28%), Positives = 11/32 (34%), Gaps = 3/32 (9%)
Query: 94 TTCKYSMIGCPWCGPQHELKSHEESCAHPHKS 125
+C C W G + H H HKS
Sbjct: 37 YSCPCPGASCKWQGSLDAVMPH---LMHQHKS 65
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.0 bits (82), Expect = 0.013
Identities = 31/212 (14%), Positives = 58/212 (27%), Gaps = 59/212 (27%)
Query: 60 QMQDFVMKLLHVLTVGLKSARAVHHVTLLLRKLLTTCKYSMIGCPWCGPQHELKSHEESC 119
+ Q +L V V + + +L+ E
Sbjct: 13 EHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSK---------------------EEI 51
Query: 120 AHPHKSGAEVMESLQAIETTKDIEKRLYDNLFELL---SYEKIIFNELQMKPYRT---DE 173
H S V +L+ T ++ + E + +Y+ + M P +T
Sbjct: 52 DHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFL------MSPIKTEQRQP 105
Query: 174 FIHKLFYETSRFSAFN-NQWVVKARINTCQRDPTLSSDREMTYQLILKTKTTTAMTVHFM 232
+ Y R +N NQ K ++ R R+ +L + + + +
Sbjct: 106 SMMTRMYIEQRDRLYNDNQVFAKYNVS---RLQPYLKLRQALLEL----RPAKNVLIDGV 158
Query: 233 -----------VLRGPFGDMKVQPKIHKFEFN 253
V KVQ K +F
Sbjct: 159 LGSGKTWVALDVCL----SYKVQ---CKMDFK 183
>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain
associated with ring and TRAF domains protein 1,
malignant 62; NMR {Homo sapiens}
Length = 76
Score = 32.2 bits (73), Expect = 0.027
Identities = 9/31 (29%), Positives = 12/31 (38%), Gaps = 3/31 (9%)
Query: 92 LLTTCKYSMIGCPWCG---PQHELKSHEESC 119
L C + C +CG +SHE C
Sbjct: 36 LQHDCPKRRLKCEFCGCDFSGEAYESHEGMC 66
>2yre_A F-box only protein 30; zinc binding, E3 ubiquitin ligase, SCF,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 30.0 bits (67), Expect = 0.29
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 96 CKYSMIGCPWCGPQHELKSHEESC 119
C S GCP+ ++++ H E C
Sbjct: 67 CLNSDFGCPFTMARNKVAEHLEMC 90
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL conjugation,
UBL conjugation pathway; 2.10A {Homo sapiens} PDB:
3hcu_A 2eci_A 2jmd_A
Length = 118
Score = 30.2 bits (68), Expect = 0.29
Identities = 7/45 (15%), Positives = 12/45 (26%), Gaps = 2/45 (4%)
Query: 77 KSARAVHHVTLLLRKLLTTCKYSMIGCPWCGPQHELKSHEESCAH 121
+ + L+ C GC L+ H+ C
Sbjct: 66 NQLFPDNFAKREILSLMVKCPNE--GCLHKMELRHLEDHQAHCEF 108
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 1.2
Identities = 9/30 (30%), Positives = 11/30 (36%), Gaps = 10/30 (33%)
Query: 28 EKALVKADKLEQRLGGILCCAVCLDLPRSA 57
EK +K KL+ L L SA
Sbjct: 18 EKQALK--KLQASLK--------LYADDSA 37
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL conjugation,
UBL conjugation pathway; 2.20A {Homo sapiens}
Length = 170
Score = 28.9 bits (64), Expect = 1.4
Identities = 6/35 (17%), Positives = 14/35 (40%), Gaps = 3/35 (8%)
Query: 88 LLRKLLTTCKYSMIGCPWCG---PQHELKSHEESC 119
+ +L C + C C + + H+++C
Sbjct: 125 INIHILKDCPRRQVSCDNCAASMAFEDKEIHDQNC 159
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 75
Score = 27.3 bits (60), Expect = 1.5
Identities = 9/29 (31%), Positives = 12/29 (41%), Gaps = 3/29 (10%)
Query: 94 TTCKYSMIGCPWCG---PQHELKSHEESC 119
T C + C C +LK HE+ C
Sbjct: 11 TECPLRLAVCQHCDLELSILKLKEHEDYC 39
>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 66
Score = 26.8 bits (59), Expect = 2.0
Identities = 5/27 (18%), Positives = 10/27 (37%), Gaps = 3/27 (11%)
Query: 96 CKYSMIGCPWCGPQH---ELKSHEESC 119
C +C + ++SH+ C
Sbjct: 6 SGKRTQPCTYCTKEFVFDTIQSHQYQC 32
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG,
structural genomics, PSI-2, protein struc initiative;
NMR {Homo sapiens}
Length = 91
Score = 27.3 bits (61), Expect = 2.1
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
Query: 20 PEAKKRKIEKAL--VKADKLEQRLGGILCCAVCLD 52
P A K I+ AL + + +G +CC +C
Sbjct: 15 PPASKESID-ALPEILVTEDHGAVGQEMCCPICCS 48
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 28.2 bits (62), Expect = 2.4
Identities = 10/35 (28%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
Query: 9 ISITNQIETEEPEA-KKRKIE--KALVKADKLEQR 40
I+ +++ T+EPE+ +K + E K L + D +
Sbjct: 74 IAQADRL-TQEPESIRKWREEQRKRLQELDAASKV 107
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.135 0.400
Gapped
Lambda K H
0.267 0.0504 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,214,380
Number of extensions: 233704
Number of successful extensions: 508
Number of sequences better than 10.0: 1
Number of HSP's gapped: 505
Number of HSP's successfully gapped: 22
Length of query: 292
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 199
Effective length of database: 4,105,140
Effective search space: 816922860
Effective search space used: 816922860
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.3 bits)