RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5746
         (292 letters)



>d1k2fa_ b.8.1.2 (A:) SIAH, seven in absentia homolog {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 190

 Score = 34.2 bits (78), Expect = 0.010
 Identities = 11/26 (42%), Positives = 12/26 (46%)

Query: 96  CKYSMIGCPWCGPQHELKSHEESCAH 121
           CKY+  GC    P  E   HEE C  
Sbjct: 6   CKYASSGCEITLPHTEKAEHEELCEF 31


>d1lwha1 b.71.1.1 (A:392-441) 4-alpha-glucanotransferase {Thermotoga
           maritima [TaxId: 2336]}
          Length = 50

 Score = 26.1 bits (57), Expect = 0.87
 Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 5/33 (15%)

Query: 145 RLYDN-----LFELLSYEKIIFNELQMKPYRTD 172
           RLYD+     +F  LS E+++F  ++MKPY+T+
Sbjct: 16  RLYDDQHSLKVFHNLSGEEVVFEGVKMKPYKTE 48


>d3b8pa1 d.58.60.1 (A:54-292) Chain length determinant protein WzzB
           {Salmonella typhimurium [TaxId: 90371]}
          Length = 239

 Score = 26.8 bits (59), Expect = 2.5
 Identities = 9/47 (19%), Positives = 18/47 (38%), Gaps = 2/47 (4%)

Query: 126 GAEVMESLQAIETTKD--IEKRLYDNLFELLSYEKIIFNELQMKPYR 170
           G++ ++S+   E T+        Y     LL  + +      +  YR
Sbjct: 179 GSDALKSMIQNEATRPLVFSPAYYQTKQTLLDIKNLKVTADTVHVYR 225


>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin
           containing protein Txnl5) {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 119

 Score = 25.2 bits (54), Expect = 5.4
 Identities = 4/31 (12%), Positives = 6/31 (19%)

Query: 99  SMIGCPWCGPQHELKSHEESCAHPHKSGAEV 129
              G  WC    + +            G   
Sbjct: 33  DAGGKSWCPDCVQAEPVVREGLKHISEGCVF 63


>d1kl7a_ c.79.1.1 (A:) Threonine synthase {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 511

 Score = 25.4 bits (55), Expect = 10.0
 Identities = 11/41 (26%), Positives = 17/41 (41%)

Query: 118 SCAHPHKSGAEVMESLQAIETTKDIEKRLYDNLFELLSYEK 158
           S AHP K    V  +L         +  L + L +L + +K
Sbjct: 447 STAHPAKFADAVNNALSGFSNYSFEKDVLPEELKKLSTLKK 487


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.135    0.400 

Gapped
Lambda     K      H
   0.267   0.0590    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,034,432
Number of extensions: 45639
Number of successful extensions: 125
Number of sequences better than 10.0: 1
Number of HSP's gapped: 125
Number of HSP's successfully gapped: 13
Length of query: 292
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 207
Effective length of database: 1,240,546
Effective search space: 256793022
Effective search space used: 256793022
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.1 bits)