BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5750
(286 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VJ3|A Chain A, Human Notch-1 Egfs 11-13
Length = 135
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 67/133 (50%), Gaps = 22/133 (16%)
Query: 114 DINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDPRA 173
D++EC+ G + C C N +GS+ CQC G+TG EI V + ++PC++D
Sbjct: 4 DVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPR---CEIDVNEC-VSNPCQND--- 56
Query: 174 CNPPHSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCINRP 233
+TC + C C PGY+ + + + DEC + P C +N C+++
Sbjct: 57 -----ATCLDQIGEFQCICMPGYEGVHCE--------VNTDECASSP--CLHNGRCLDKI 101
Query: 234 GTYQCQCKRGFSG 246
+QC+C GF+G
Sbjct: 102 NEFQCECPTGFTG 114
Score = 32.3 bits (72), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 16/81 (19%)
Query: 69 DPCKNFFCVANSSCIVEDDKPTCICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLCHKN 128
+PC+N +++C+ + + CIC G++ ++ E + +EC + C N
Sbjct: 51 NPCQN-----DATCLDQIGEFQCICMPGYEGVHCE---------VNTDEC--ASSPCLHN 94
Query: 129 AMCFNEIGSYSCQCRPGFTGN 149
C ++I + C+C GFTG+
Sbjct: 95 GRCLDKINEFQCECPTGFTGH 115
>pdb|1TOZ|A Chain A, Nmr Structure Of The Human Notch-1 Ligand Binding Region
Length = 116
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 67/133 (50%), Gaps = 22/133 (16%)
Query: 114 DINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDPRA 173
D++EC+ G + C C N +GS+ CQC G+TG EI V + ++PC++D
Sbjct: 2 DVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPR---CEIDVNEC-VSNPCQND--- 54
Query: 174 CNPPHSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCINRP 233
+TC + C C PGY+ + + + DEC + P C +N C+++
Sbjct: 55 -----ATCLDQIGEFQCICMPGYEGVHCE--------VNTDECASSP--CLHNGRCLDKI 99
Query: 234 GTYQCQCKRGFSG 246
+QC+C GF+G
Sbjct: 100 NEFQCECPTGFTG 112
Score = 31.6 bits (70), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 16/81 (19%)
Query: 69 DPCKNFFCVANSSCIVEDDKPTCICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLCHKN 128
+PC+N +++C+ + + CIC G++ ++ E + +EC + C N
Sbjct: 49 NPCQN-----DATCLDQIGEFQCICMPGYEGVHCE---------VNTDEC--ASSPCLHN 92
Query: 129 AMCFNEIGSYSCQCRPGFTGN 149
C ++I + C+C GFTG+
Sbjct: 93 GRCLDKINEFQCECPTGFTGH 113
>pdb|2BO2|A Chain A, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Calcium.
pdb|2BO2|B Chain B, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Calcium.
pdb|2BOU|A Chain A, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Barium.
pdb|2BOX|A Chain A, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System
Molecule, In Complex With Strontium
Length = 143
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 91 CICNRGFQQLYSEDRLQDDF--GCFDINECNAGTDLCHKNAMCFNEIGSYSCQCRPGF 146
C+C+ G++ + +++ C D++EC++G C + +CFN +GSYSC+CRPG+
Sbjct: 70 CVCSPGYEPVSGAKTFKNESENTCQDVDECSSGQHQCDSSTVCFNTVGSYSCRCRPGW 127
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 57/128 (44%), Gaps = 15/128 (11%)
Query: 124 LCHKNAMCFNEIGSYSCQCRPGFTGNGHQCTEITVPQTG--PTSPCESDPRACNPPHSTC 181
C +++ C N + +C+C PGF+ IT P + C + + S C
Sbjct: 8 WCPQDSSCVN---ATACRCNPGFSSFSEI---ITTPMETCDDINECATLSKVSCGKFSDC 61
Query: 182 TNLTDYRTCNCDPGYQ-----KDYLDDRRVAFVCTDVDECMNYPPICNNNADCINRPGTY 236
N C C PGY+ K + ++ C DVDEC + C+++ C N G+Y
Sbjct: 62 WNTEGSYDCVCSPGYEPVSGAKTFKNESE--NTCQDVDECSSGQHQCDSSTVCFNTVGSY 119
Query: 237 QCQCKRGF 244
C+C+ G+
Sbjct: 120 SCRCRPGW 127
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 57/126 (45%), Gaps = 8/126 (6%)
Query: 75 FCVANSSCIVEDDKPTCICNRGFQQLYSEDRLQDDFGCFDINECNAGTDL-CHKNAMCFN 133
+C +SSC+ + C CN GF +SE C DINEC + + C K + C+N
Sbjct: 8 WCPQDSSCV---NATACRCNPGFSS-FSEIITTPMETCDDINECATLSKVSCGKFSDCWN 63
Query: 134 EIGSYSCQCRPGFTG-NGHQCTEITVPQT-GPTSPCESDPRACNPPHSTCTNLTDYRTCN 191
GSY C C PG+ +G + + T C S C+ + C N +C
Sbjct: 64 TEGSYDCVCSPGYEPVSGAKTFKNESENTCQDVDECSSGQHQCDS-STVCFNTVGSYSCR 122
Query: 192 CDPGYQ 197
C PG++
Sbjct: 123 CRPGWK 128
>pdb|2W86|A Chain A, Crystal Structure Of Fibrillin-1 Domains
Cbegf9hyb2cbegf10, Calcium Saturated Form
Length = 147
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 67/155 (43%), Gaps = 20/155 (12%)
Query: 114 DINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGNGHQ--CTEI---TVPQTGPTSPCE 168
DI+EC + + N +C N GS+ C+C T + + C E T QT CE
Sbjct: 3 DIDECESSPCI---NGVCKNSPGSFICECSSESTLDPTKTICIETIKGTCWQTVIDGRCE 59
Query: 169 SDPRACNPPHSTCTNL-----TDYRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPIC 223
+ C++L + C DP K Y R C D+DEC +P +C
Sbjct: 60 ININGATLKSQCCSSLGAAWGSPCTLCQVDPICGKGY--SRIKGTQCEDIDECEVFPGVC 117
Query: 224 NNNADCINRPGTYQCQCKRGFSGDGFNCEEGKYCL 258
N C+N G+++CQC G + D G+ CL
Sbjct: 118 KNGL-CVNTRGSFKCQCPSGMTLDA----TGRICL 147
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 10/86 (11%)
Query: 62 HSSTVNDDPCKNFFCVANSSCIVEDDKPTCICNRGFQQLYSEDRLQDDFGCFDINECNAG 121
+ +T+ C + S C + P IC +G+ ++ C DI+EC
Sbjct: 63 NGATLKSQCCSSLGAAWGSPCTLCQVDP--ICGKGYSRIKGTQ-------CEDIDECEVF 113
Query: 122 TDLCHKNAMCFNEIGSYSCQCRPGFT 147
+C KN +C N GS+ CQC G T
Sbjct: 114 PGVC-KNGLCVNTRGSFKCQCPSGMT 138
>pdb|1LMJ|A Chain A, Nmr Study Of The Fibrillin-1 Cbegf12-13 Pair Of Ca2+
Binding Epidermal Growth Factor-like Domains
Length = 86
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 7/77 (9%)
Query: 167 CESDPRACNPPHSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNN 226
C P C C N C CD GY+ ++ + C D+DEC P +C
Sbjct: 6 CRISPDLCG--RGQCVNTPGDFECKCDEGYESGFM----MMKNCMDIDECQRDPLLCRGG 59
Query: 227 ADCINRPGTYQCQCKRG 243
C N G+Y+C+C G
Sbjct: 60 V-CHNTEGSYRCECPPG 75
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 33/84 (39%), Gaps = 8/84 (9%)
Query: 114 DINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDPRA 173
DI+EC DLC + C N G + C+C G+ + + C+ DP
Sbjct: 2 DIDECRISPDLCGR-GQCVNTPGDFECKCDEGYESG-----FMMMKNCMDIDECQRDPLL 55
Query: 174 CNPPHSTCTNLTDYRTCNCDPGYQ 197
C C N C C PG+Q
Sbjct: 56 CR--GGVCHNTEGSYRCECPPGHQ 77
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Query: 91 CICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLCHKNAMCFNEIGSYSCQCRPG 145
C C+ G++ + + C DI+EC LC + +C N GSY C+C PG
Sbjct: 27 CKCDEGYESGFMMMK-----NCMDIDECQRDPLLC-RGGVCHNTEGSYRCECPPG 75
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 212 DVDECMNYPPICNNNADCINRPGTYQCQCKRGF 244
D+DEC P +C C+N PG ++C+C G+
Sbjct: 2 DIDECRISPDLCGR-GQCVNTPGDFECKCDEGY 33
>pdb|3M0C|C Chain C, The X-Ray Crystal Structure Of Pcsk9 In Complex With The
Ldl Receptor
Length = 791
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 43/98 (43%), Gaps = 16/98 (16%)
Query: 180 TCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCINRPGTYQCQ 239
C +L C C G+Q + RR C D+DEC + P C+ C+N G Y+CQ
Sbjct: 325 VCNDLKIGYECLCPDGFQ--LVAQRR----CEDIDECQD-PDTCSQL--CVNLEGGYKCQ 375
Query: 240 CKRGFSGDGFNCEEGKYCLVVGITLCKMYLEVVNIQEI 277
C+ GF D K C VG YL N E+
Sbjct: 376 CEEGFQLDPHT----KACKAVGSI---AYLFFTNRHEV 406
>pdb|1N7D|A Chain A, Extracellular Domain Of The Ldl Receptor
Length = 699
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 43/98 (43%), Gaps = 16/98 (16%)
Query: 180 TCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCINRPGTYQCQ 239
C +L C C G+Q + RR C D+DEC + P C+ C+N G Y+CQ
Sbjct: 307 VCNDLKIGYECLCPDGFQ--LVAQRR----CEDIDECQD-PDTCSQL--CVNLEGGYKCQ 357
Query: 240 CKRGFSGDGFNCEEGKYCLVVGITLCKMYLEVVNIQEI 277
C+ GF D K C VG YL N E+
Sbjct: 358 CEEGFQLDPHT----KACKAVGSI---AYLFFTNRHEV 388
>pdb|3P5C|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
RECEPTOR IN AN Extended Conformation
Length = 440
Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 43/98 (43%), Gaps = 16/98 (16%)
Query: 180 TCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCINRPGTYQCQ 239
C +L C C G+Q + RR C D+DEC + P C+ C+N G Y+CQ
Sbjct: 53 VCNDLKIGYECLCPDGFQ--LVAQRR----CEDIDECQD-PDTCSQL--CVNLEGGYKCQ 103
Query: 240 CKRGFSGDGFNCEEGKYCLVVGITLCKMYLEVVNIQEI 277
C+ GF D K C VG YL N E+
Sbjct: 104 CEEGFQLD----PHTKACKAVGSI---AYLFFTNRHEV 134
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 31/61 (50%), Gaps = 10/61 (16%)
Query: 91 CICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGNG 150
C+C GFQ L ++ R C DI+EC D C + +C N G Y CQC GF +
Sbjct: 63 CLCPDGFQ-LVAQRR------CEDIDECQ-DPDTCSQ--LCVNLEGGYKCQCEEGFQLDP 112
Query: 151 H 151
H
Sbjct: 113 H 113
>pdb|3P5B|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
RECEPTOR IN AN Extended Conformation
Length = 400
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 43/98 (43%), Gaps = 16/98 (16%)
Query: 180 TCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCINRPGTYQCQ 239
C +L C C G+Q + RR C D+DEC + P C+ C+N G Y+CQ
Sbjct: 13 VCNDLKIGYECLCPDGFQ--LVAQRR----CEDIDECQD-PDTCSQL--CVNLEGGYKCQ 63
Query: 240 CKRGFSGDGFNCEEGKYCLVVGITLCKMYLEVVNIQEI 277
C+ GF D K C VG YL N E+
Sbjct: 64 CEEGFQLD----PHTKACKAVG---SIAYLFFTNRHEV 94
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 31/61 (50%), Gaps = 10/61 (16%)
Query: 91 CICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGNG 150
C+C GFQ L ++ R C DI+EC D C + +C N G Y CQC GF +
Sbjct: 23 CLCPDGFQ-LVAQRR------CEDIDECQ-DPDTCSQ--LCVNLEGGYKCQCEEGFQLDP 72
Query: 151 H 151
H
Sbjct: 73 H 73
>pdb|3F6U|L Chain L, Crystal Structure Of Human Activated Protein C (Apc)
Complexed With Ppack
Length = 98
Score = 34.7 bits (78), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 10/76 (13%)
Query: 122 TDLCHKNAMCFNEIGSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDPRACNPPHSTC 181
LC + C + IGS+SC CR G+ G Q E++ C D C C
Sbjct: 12 ASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQ-REVSFLN------CSLDNGGCT---HYC 61
Query: 182 TNLTDYRTCNCDPGYQ 197
+R C+C PGY+
Sbjct: 62 LEEVGWRRCSCAPGYK 77
>pdb|1AUT|L Chain L, Human Activated Protein C
Length = 114
Score = 34.3 bits (77), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 10/76 (13%)
Query: 122 TDLCHKNAMCFNEIGSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDPRACNPPHSTC 181
LC + C IGS+SC CR G+ G Q E++ C D C C
Sbjct: 19 ASLCCGHGTCIXGIGSFSCDCRSGWEGRFCQ-REVSFLN------CSLDNGGCT---HYC 68
Query: 182 TNLTDYRTCNCDPGYQ 197
+R C+C PGY+
Sbjct: 69 LEEVGWRRCSCAPGYK 84
>pdb|3BPS|E Chain E, Pcsk9:egf-a Complex
pdb|3GCX|E Chain E, Pcsk9:egfa (Ph 7.4)
Length = 83
Score = 33.9 bits (76), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 9/68 (13%)
Query: 180 TCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCINRPGTYQCQ 239
C +L C C G+Q + RR C D+DEC + P C+ C+N G Y+CQ
Sbjct: 18 VCNDLKIGYECLCPDGFQ--LVAQRR----CEDIDECQD-PDTCSQL--CVNLEGGYKCQ 68
Query: 240 CKRGFSGD 247
C+ GF D
Sbjct: 69 CEEGFQLD 76
Score = 31.2 bits (69), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 31/61 (50%), Gaps = 10/61 (16%)
Query: 91 CICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGNG 150
C+C GFQ L ++ R C DI+EC D C + +C N G Y CQC GF +
Sbjct: 28 CLCPDGFQ-LVAQRR------CEDIDECQD-PDTCSQ--LCVNLEGGYKCQCEEGFQLDP 77
Query: 151 H 151
H
Sbjct: 78 H 78
>pdb|1HZ8|A Chain A, Solution Structure And Backbone Dynamics Of A Concatemer
Of Egf-Homology Modules Of The Human Low Density
Lipoprotein Receptor
pdb|1I0U|A Chain A, Solution Structure And Backbone Dynamics Of A Concatemer
Of Egf-Homology Modules Of The Human Low Density
Lipoprotein Receptor
Length = 82
Score = 33.9 bits (76), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 9/68 (13%)
Query: 180 TCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCINRPGTYQCQ 239
C +L C C G+Q + RR C D+DEC + P C+ C+N G Y+CQ
Sbjct: 15 VCNDLKIGYECLCPDGFQ--LVAQRR----CEDIDECQD-PDTCSQL--CVNLEGGYKCQ 65
Query: 240 CKRGFSGD 247
C+ GF D
Sbjct: 66 CEEGFQLD 73
Score = 31.6 bits (70), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 31/61 (50%), Gaps = 10/61 (16%)
Query: 91 CICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGNG 150
C+C GFQ L ++ R C DI+EC D C + +C N G Y CQC GF +
Sbjct: 25 CLCPDGFQ-LVAQRR------CEDIDECQ-DPDTCSQ--LCVNLEGGYKCQCEEGFQLDP 74
Query: 151 H 151
H
Sbjct: 75 H 75
>pdb|2W2M|E Chain E, Wt Pcsk9-Deltac Bound To Wt Egf-A Of Ldlr
pdb|2W2O|E Chain E, Pcsk9-deltac D374y Mutant Bound To Wt Egf-a Of Ldlr
pdb|2W2P|E Chain E, Pcsk9-Deltac D374a Mutant Bound To Wt Egf-A Of Ldlr
pdb|2W2Q|E Chain E, Pcsk9-Deltac D374h Mutant Bound To Wt Egf-A Of Ldlr
Length = 107
Score = 33.9 bits (76), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 9/68 (13%)
Query: 180 TCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCINRPGTYQCQ 239
C +L C C G+Q + RR C D+DEC + P C+ C+N G Y+CQ
Sbjct: 42 VCNDLKIGYECLCPDGFQ--LVAQRR----CEDIDECQD-PDTCSQL--CVNLEGGYKCQ 92
Query: 240 CKRGFSGD 247
C+ GF D
Sbjct: 93 CEEGFQLD 100
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 31/61 (50%), Gaps = 10/61 (16%)
Query: 91 CICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGNG 150
C+C GFQ L ++ R C DI+EC D C + +C N G Y CQC GF +
Sbjct: 52 CLCPDGFQ-LVAQRR------CEDIDECQ-DPDTCSQ--LCVNLEGGYKCQCEEGFQLDP 101
Query: 151 H 151
H
Sbjct: 102 H 102
>pdb|2W2N|E Chain E, Wt Pcsk9-Deltac Bound To Egf-A H306y Mutant Of Ldlr
Length = 107
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 9/68 (13%)
Query: 180 TCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCINRPGTYQCQ 239
C +L C C G+Q + RR C D+DEC + P C+ C+N G Y+CQ
Sbjct: 42 VCNDLKIGYECLCPDGFQ--LVAQRR----CEDIDECQD-PDTCSQL--CVNLEGGYKCQ 92
Query: 240 CKRGFSGD 247
C+ GF D
Sbjct: 93 CEEGFQLD 100
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 31/61 (50%), Gaps = 10/61 (16%)
Query: 91 CICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGNG 150
C+C GFQ L ++ R C DI+EC D C + +C N G Y CQC GF +
Sbjct: 52 CLCPDGFQ-LVAQRR------CEDIDECQ-DPDTCSQ--LCVNLEGGYKCQCEEGFQLDP 101
Query: 151 H 151
H
Sbjct: 102 H 102
>pdb|3GCW|E Chain E, Pcsk9:egfa(H306y)
Length = 83
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 9/68 (13%)
Query: 180 TCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCINRPGTYQCQ 239
C +L C C G+Q + RR C D+DEC + P C+ C+N G Y+CQ
Sbjct: 18 VCNDLKIGYECLCPDGFQ--LVAQRR----CEDIDECQD-PDTCSQL--CVNLEGGYKCQ 68
Query: 240 CKRGFSGD 247
C+ GF D
Sbjct: 69 CEEGFQLD 76
Score = 31.2 bits (69), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 31/61 (50%), Gaps = 10/61 (16%)
Query: 91 CICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGNG 150
C+C GFQ L ++ R C DI+EC D C + +C N G Y CQC GF +
Sbjct: 28 CLCPDGFQ-LVAQRR------CEDIDECQD-PDTCSQ--LCVNLEGGYKCQCEEGFQLDP 77
Query: 151 H 151
H
Sbjct: 78 H 78
>pdb|1HJ7|A Chain A, Nmr Study Of A Pair Of Ldl Receptor Ca2+ Binding Epidermal
Growth Factor-Like Domains, 20 Structures
Length = 80
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 9/68 (13%)
Query: 180 TCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCINRPGTYQCQ 239
C +L C C G+Q + RR C D+DEC + P C+ C+N G Y+CQ
Sbjct: 15 VCNDLKIGYECLCPDGFQ--LVAQRR----CEDIDECQD-PDTCSQL--CVNLEGGYKCQ 65
Query: 240 CKRGFSGD 247
C+ GF D
Sbjct: 66 CEEGFQLD 73
Score = 31.2 bits (69), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 31/61 (50%), Gaps = 10/61 (16%)
Query: 91 CICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGNG 150
C+C GFQ L ++ R C DI+EC D C + +C N G Y CQC GF +
Sbjct: 25 CLCPDGFQ-LVAQRR------CEDIDECQ-DPDTCSQ--LCVNLEGGYKCQCEEGFQLDP 74
Query: 151 H 151
H
Sbjct: 75 H 75
>pdb|1UZJ|A Chain A, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Holo Form.
pdb|1UZJ|B Chain B, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Holo Form.
pdb|1UZJ|C Chain C, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Holo Form.
pdb|1UZP|A Chain A, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Sm Bound Form Cbegf23 Domain Only.
pdb|1UZQ|A Chain A, Integrin Binding Cbegf22-Tb4-Cbegf33 Fragment Of Human
Fibrillin-1, Apo Form Cbegf23 Domain Only
Length = 162
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 61/159 (38%), Gaps = 36/159 (22%)
Query: 114 DINECNAGTDLCHKNAMCFNEIGSYSCQCRPGF-------------TGNGH--------- 151
D+NEC T N C N GSY C C P F +GN +
Sbjct: 2 DVNECLDPTTCISGN--CVNTPGSYICDCPPDFELNPTRVGCVDTRSGNCYLDIRPRGDN 59
Query: 152 ---QCTEITVPQTGPTSPCESDPRACNPPHSTC--TNLTDYRT-CNCDPGYQKDYLDDRR 205
C+ S C S +A P C N ++Y+ C G++ +
Sbjct: 60 GDTACSNEIGVGVSKASCCCSLGKAWGTPCEMCPAVNTSEYKILCPGGEGFRPN-----P 114
Query: 206 VAFVCTDVDECMNYPPICNNNADCINRPGTYQCQCKRGF 244
+ + D+DEC P +C CIN G++QC+C G+
Sbjct: 115 ITVILEDIDECQELPGLCQG-GKCINTFGSFQCRCPTGY 152
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 211 TDVDECMNYPPICNNNADCINRPGTYQCQCKRGF 244
TDV+EC++ P + +C+N PG+Y C C F
Sbjct: 1 TDVNECLD--PTTCISGNCVNTPGSYICDCPPDF 32
>pdb|1UZK|A Chain A, Integrin Binding Cbegf22-tb4-cbegf33 Fragment Of Human
Fibrillin-1, Ca Bound To Cbegf23 Domain Only
Length = 162
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 61/159 (38%), Gaps = 36/159 (22%)
Query: 114 DINECNAGTDLCHKNAMCFNEIGSYSCQCRPGF-------------TGNGH--------- 151
D+NEC T N C N GSY C C P F +GN +
Sbjct: 2 DVNECLDPTTCISGN--CVNTPGSYICDCPPDFELNPTRVGCVDTRSGNCYLDIRPRGDN 59
Query: 152 ---QCTEITVPQTGPTSPCESDPRACNPPHSTC--TNLTDYRT-CNCDPGYQKDYLDDRR 205
C+ S C S +A P C N ++Y+ C G++ +
Sbjct: 60 GDTACSNEIGVGVSKASCCCSLGKAWGTPCEXCPAVNTSEYKILCPGGEGFRPN-----P 114
Query: 206 VAFVCTDVDECMNYPPICNNNADCINRPGTYQCQCKRGF 244
+ + D+DEC P +C CIN G++QC+C G+
Sbjct: 115 ITVILEDIDECQELPGLCQG-GKCINTFGSFQCRCPTGY 152
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 211 TDVDECMNYPPICNNNADCINRPGTYQCQCKRGF 244
TDV+EC++ P + +C+N PG+Y C C F
Sbjct: 1 TDVNECLD--PTTCISGNCVNTPGSYICDCPPDF 32
>pdb|2RQZ|A Chain A, Structure Of Sugar Modified Epidermal Growth Factor-Like
Repeat 12 Of Mouse Notch-1 Receptor
pdb|2RR0|A Chain A, Structure Of Epidermal Growth Factor-Like Repeat 12 Of
Mouse Notch-1 Receptor
pdb|2RR2|A Chain A, Structure Of O-Fucosylated Epidermal Growth Factor-Like
Repeat 12 Of Mouse Notch-1 Receptor
Length = 38
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 24/35 (68%), Gaps = 2/35 (5%)
Query: 212 DVDECMNYPPICNNNADCINRPGTYQCQCKRGFSG 246
DV+EC++ P C N+A C+++ G +QC C G+ G
Sbjct: 1 DVNECISNP--CQNDATCLDQIGEFQCICMPGYEG 33
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 114 DINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTG 148
D+NEC + C +A C ++IG + C C PG+ G
Sbjct: 1 DVNECISNP--CQNDATCLDQIGEFQCICMPGYEG 33
>pdb|1BWD|A Chain A, Inosamine-Phosphate Amidinotransferase Strb1 From
Streptomyces Griseus
pdb|1BWD|B Chain B, Inosamine-Phosphate Amidinotransferase Strb1 From
Streptomyces Griseus
Length = 348
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 42/102 (41%), Gaps = 4/102 (3%)
Query: 56 LQQEFTHSSTVNDDPCKNFFCVANSSCIVEDDKPTCICNRGFQQLYSEDRLQDDFGCFDI 115
L+ F S D + F A+ S + KP + Q + +RL D+ FD
Sbjct: 124 LRSRFLESLAYKDLLLEYF---ASGSRWLSAPKPRLTDDSYAPQAPAGERLTDEEPVFDA 180
Query: 116 -NECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGNGHQCTEI 156
N GTDL + + NE+G+ Q G T H C ++
Sbjct: 181 ANVLRFGTDLLYLVSDSGNELGAKWLQSAVGDTYTVHPCRKL 222
>pdb|1Z6C|A Chain A, Solution Structure Of An Egf Pair (Egf34) From Vitamin K-
Dependent Protein S
Length = 87
Score = 32.0 bits (71), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 212 DVDECMNYPPICNNNADCINRPGTYQCQCKRGF 244
DVDEC P IC A C N PG ++C+C G+
Sbjct: 2 DVDECSLKPSICGT-AVCKNIPGDFECECPEGY 33
Score = 27.7 bits (60), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 33/82 (40%), Gaps = 15/82 (18%)
Query: 167 CESDPRACNPPHSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNN 226
C P C + C N+ C C GY+ + C D+DEC N
Sbjct: 6 CSLKPSICG--TAVCKNIPGDFECECPEGYRYNLKSKS-----CEDIDECSE-----NMC 53
Query: 227 AD-CINRPGTYQCQC--KRGFS 245
A C+N PG Y C C K+GF
Sbjct: 54 AQLCVNYPGGYTCYCDGKKGFK 75
>pdb|1EMN|A Chain A, Nmr Study Of A Pair Of Fibrillin Ca2+ Binding Epidermal
Growth Factor-Like Domains, Minimized Average Structure
pdb|1EMO|A Chain A, Nmr Study Of A Pair Of Fibrillin Ca2+ Binding Epidermal
Growth Factor-Like Domains, 22 Structures
Length = 82
Score = 32.0 bits (71), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 13/85 (15%)
Query: 113 FDINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDPR 172
D++EC D+C K+ C N GSY C+C G+ G++C + G +PC
Sbjct: 3 VDMDECKE-PDVC-KHGQCINTDGSYRCECPFGYILAGNECVDTDECSVG--NPC----- 53
Query: 173 ACNPPHSTCTNLTDYRTCNCDPGYQ 197
+ TC N+ C C+ G++
Sbjct: 54 ----GNGTCKNVIGGFECTCEEGFE 74
Score = 31.6 bits (70), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 33/83 (39%), Gaps = 10/83 (12%)
Query: 64 STVNDDPCKNFFCVANSSCIVEDDKPTCICNRGFQQLYSEDRLQDDFGCFDINECNAGTD 123
S V+ D CK + CI D C C G+ +E C D +EC+ G
Sbjct: 1 SAVDMDECKEPDVCKHGQCINTDGSYRCECPFGYILAGNE--------CVDTDECSVGNP 52
Query: 124 LCHKNAMCFNEIGSYSCQCRPGF 146
N C N IG + C C GF
Sbjct: 53 C--GNGTCKNVIGGFECTCEEGF 73
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 211 TDVDECMNYPPICNNNADCINRPGTYQCQCKRGFSGDGFNCEEGKYCLV 259
D+DEC P +C + CIN G+Y+C+C G+ G C + C V
Sbjct: 3 VDMDECKE-PDVCKH-GQCINTDGSYRCECPFGYILAGNECVDTDECSV 49
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 27/76 (35%), Gaps = 11/76 (14%)
Query: 169 SDPRACNPPHSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNAD 228
+P C H C N C C GY C D DEC P N
Sbjct: 9 KEPDVCK--HGQCINTDGSYRCECPFGY-------ILAGNECVDTDECSVGNPC--GNGT 57
Query: 229 CINRPGTYQCQCKRGF 244
C N G ++C C+ GF
Sbjct: 58 CKNVIGGFECTCEEGF 73
>pdb|3GIS|X Chain X, Crystal Structure Of Na-Free Thrombin In Complex With
Thrombomodulin
pdb|3GIS|Y Chain Y, Crystal Structure Of Na-Free Thrombin In Complex With
Thrombomodulin
pdb|3GIS|Z Chain Z, Crystal Structure Of Na-Free Thrombin In Complex With
Thrombomodulin
Length = 121
Score = 31.6 bits (70), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 42/104 (40%), Gaps = 22/104 (21%)
Query: 137 SYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDPRACNPPHSTCTNLTDYRTCNCDPGY 196
SY C C GF H+ + P + DP +C C GY
Sbjct: 23 SYLCVCAEGFAPIPHEPHRCQLFCNQTACPADCDPNT-------------QASCECPEGY 69
Query: 197 QKDYLDDRRVAFVCTDVDECMNYPPICNNNADCINRPGTYQCQC 240
LDD F+CTD+DEC N C+ C N PGT++C C
Sbjct: 70 ---ILDD---GFICTDIDECENG-GFCSGV--CHNLPGTFECIC 104
>pdb|1DX5|I Chain I, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1DX5|J Chain J, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1DX5|K Chain K, Crystal Structure Of The Thrombin-Thrombomodulin Complex
pdb|1DX5|L Chain L, Crystal Structure Of The Thrombin-Thrombomodulin Complex
Length = 118
Score = 31.2 bits (69), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 42/104 (40%), Gaps = 22/104 (21%)
Query: 137 SYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDPRACNPPHSTCTNLTDYRTCNCDPGY 196
SY C C GF H+ + P + DP +C C GY
Sbjct: 23 SYLCVCAEGFAPIPHEPHRCQMFCNQTACPADCDPNT-------------QASCECPEGY 69
Query: 197 QKDYLDDRRVAFVCTDVDECMNYPPICNNNADCINRPGTYQCQC 240
LDD F+CTD+DEC N C+ C N PGT++C C
Sbjct: 70 ---ILDD---GFICTDIDECENG-GFCSGV--CHNLPGTFECIC 104
>pdb|1G1Q|A Chain A, Crystal Structure Of P-Selectin LectinEGF DOMAINS
pdb|1G1Q|B Chain B, Crystal Structure Of P-Selectin LectinEGF DOMAINS
pdb|1G1Q|C Chain C, Crystal Structure Of P-Selectin LectinEGF DOMAINS
pdb|1G1Q|D Chain D, Crystal Structure Of P-Selectin LectinEGF DOMAINS
pdb|1G1R|A Chain A, Crystal Structure Of P-Selectin LectinEGF DOMAINS
Complexed With Slex
pdb|1G1R|B Chain B, Crystal Structure Of P-Selectin LectinEGF DOMAINS
Complexed With Slex
pdb|1G1R|C Chain C, Crystal Structure Of P-Selectin LectinEGF DOMAINS
Complexed With Slex
pdb|1G1R|D Chain D, Crystal Structure Of P-Selectin LectinEGF DOMAINS
Complexed With Slex
pdb|1G1S|A Chain A, P-selectin Lectin/egf Domains Complexed With Psgl-1
Peptide
pdb|1G1S|B Chain B, P-selectin Lectin/egf Domains Complexed With Psgl-1
Peptide
Length = 162
Score = 31.2 bits (69), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 125 CHKNAMCFNEIGSYSCQCRPGFTG 148
C K C IG+Y+C C PGF G
Sbjct: 127 CSKQGECLETIGNYTCSCYPGFYG 150
>pdb|1FSB|A Chain A, Structure Of The Egf Domain Of P-Selectin, Nmr, 19
Structures
Length = 40
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 125 CHKNAMCFNEIGSYSCQCRPGFTG 148
C K C IG+Y+C C PGF G
Sbjct: 9 CSKQGECLETIGNYTCSCYPGFYG 32
>pdb|1SP4|B Chain B, Crystal Structure Of Ns-134 In Complex With Bovine
Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor
Extends Along The Whole Active Site Cleft
Length = 205
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 5/44 (11%)
Query: 166 PCESDPRACNPPHSTCTNLTDYRTCN--CDPGYQKDYLDDRRVA 207
PCE PP CT D CN C+PGY Y +D+
Sbjct: 59 PCEHHVNGSRPP---CTGEGDTPKCNKTCEPGYSPSYKEDKHFG 99
>pdb|4D90|A Chain A, Crystal Structure Of Del-1 Egf Domains
pdb|4D90|B Chain B, Crystal Structure Of Del-1 Egf Domains
Length = 143
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 52/134 (38%), Gaps = 25/134 (18%)
Query: 125 CHKNAMCFNEI--GSYSCQCRPGFTG-NGHQCTEITVPQTGPTSPCESDPRACNPPHS-- 179
C +C + GS+SC+C GFT N E+ + PTS + P NP H+
Sbjct: 8 CENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTS---AGPCTPNPCHNGG 64
Query: 180 TCTNLTDYR-------TCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCINR 232
TC YR C C G+ + +++EC P C N C +
Sbjct: 65 TCEISEAYRGDTFIGYVCKCPRGFNGIHCQH--------NINECEVEP--CKNGGICTDL 114
Query: 233 PGTYQCQCKRGFSG 246
Y C+C F G
Sbjct: 115 VANYSCECPGEFMG 128
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 11/63 (17%)
Query: 90 TCICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGN 149
C C RGF ++ + +INEC + C +C + + +YSC+C F G
Sbjct: 81 VCKCPRGFNGIHCQ---------HNINECE--VEPCKNGGICTDLVANYSCECPGEFMGR 129
Query: 150 GHQ 152
Q
Sbjct: 130 NCQ 132
>pdb|2RHP|A Chain A, The Thrombospondin-1 Polymorphism Asn700ser Associated
With Cornoary Artery Disease Causes Local And
Long-Ranging Changes In Protein Structure
Length = 622
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 52/138 (37%), Gaps = 34/138 (24%)
Query: 136 GSYSCQ-CRPGFTGNGHQCTEITVPQTGPTSPCESDPRACNPPHSTCTNLTDYRTCNCDP 194
GS+SC C GF GNG C ++ C P C R N P
Sbjct: 20 GSWSCGFCPVGFLGNGTHCEDL--------DECALVPDICFSTSKVP------RCVNTQP 65
Query: 195 GYQ-----KDYLDDRRVAF----------VCTDVDECMNYPPICNNNADCIN----RPGT 235
G+ Y ++ V VC + C + C+ +A+CI
Sbjct: 66 GFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCEPENPCKDKTHNCHKHAECIYLGHFSDPM 125
Query: 236 YQCQCKRGFSGDGFNCEE 253
Y+C+C+ G++GDG C E
Sbjct: 126 YKCECQTGYAGDGLICGE 143
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 6/45 (13%)
Query: 116 NECNAGTDLCHKNAMCFNEIGS-----YSCQCRPGFTGNGHQCTE 155
N C T CHK+A C +G Y C+C+ G+ G+G C E
Sbjct: 100 NPCKDKTHNCHKHAECI-YLGHFSDPMYKCECQTGYAGDGLICGE 143
>pdb|1NFU|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr132747
Length = 195
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 10/56 (17%)
Query: 212 DVDECMNYPPICNNNADCINRPGTYQCQCKRGFSGDGFNCEEGKYCLVVGITLCKM 267
D D+C P C N C + G Y C C GF EGK C + LC +
Sbjct: 41 DGDQCETSP--CQNQGKCKDGLGEYTCTCLEGF--------EGKNCELFTRKLCSL 86
>pdb|1YO8|A Chain A, Structure Of The C-Terminal Domain Of Human
Thrombospondin-2
Length = 634
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 6/45 (13%)
Query: 116 NECNAGTDLCHKNAMCFNEIG-----SYSCQCRPGFTGNGHQCTE 155
N C T CHK+A C +G Y C+C+ G+ G+G C E
Sbjct: 103 NPCKDKTHNCHKHAECI-YLGHFSDPXYKCECQTGYAGDGLICGE 146
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 209 VCTDVDECMNYPPICNNNADCIN----RPGTYQCQCKRGFSGDGFNCEE 253
VC + C + C+ +A+CI Y+C+C+ G++GDG C E
Sbjct: 98 VCEPENPCKDKTHNCHKHAECIYLGHFSDPXYKCECQTGYAGDGLICGE 146
>pdb|2H9E|L Chain L, Crystal Structure Of FxaSELECTIDENAPC2 TERNARY COMPLEX
Length = 149
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 10/56 (17%)
Query: 212 DVDECMNYPPICNNNADCINRPGTYQCQCKRGFSGDGFNCEEGKYCLVVGITLCKM 267
D D+C P C N C + G Y C C GF EGK C + LC +
Sbjct: 1 DGDQCETSP--CQNQGKCKDGLGEYTCTCLEGF--------EGKNCELFTRKLCSL 46
>pdb|3CBJ|A Chain A, Chagasin-cathepsin B Complex
pdb|3CBK|A Chain A, Chagasin-Cathepsin B
Length = 266
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 5/45 (11%)
Query: 166 PCESDPRACNPPHSTCTNLTDYRTCN--CDPGYQKDYLDDRRVAF 208
PCE+ PP CT D C+ C+PGY Y D+ +
Sbjct: 113 PCEAHVNGARPP---CTGEGDTPKCSKICEPGYSPTYKQDKHYGY 154
>pdb|1APO|A Chain A, Three-Dimensional Structure Of The Apo Form Of The N-
Terminal Egf-Like Module Of Blood Coagulation Factor X
As Determined By Nmr Spectroscopy And Simulated Folding
Length = 42
Score = 27.7 bits (60), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Query: 212 DVDECMNYPPICNNNADCINRPGTYQCQCKRGFSGDGFNCE 252
D D+C +P C N C + G Y C C GF G NCE
Sbjct: 2 DGDQCEGHP--CLNQGHCKDGIGDYTCTCAEGFEGK--NCE 38
>pdb|1EZQ|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr128515
pdb|1F0R|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208815
pdb|1F0S|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208707
pdb|1KSN|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Fxv673
pdb|1NFW|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr209685
pdb|1NFX|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr208944
pdb|1NFY|B Chain B, Crystal Structure Of Human Coagulation Factor Xa Complexed
With Rpr200095
pdb|1LPG|A Chain A, Crystal Structure Of Fxa In Complex With 79.
pdb|1LPK|A Chain A, Crystal Structure Of Fxa In Complex With 125.
pdb|1LPZ|A Chain A, Crystal Structure Of Fxa In Complex With 41.
pdb|1LQD|A Chain A, Crystal Structure Of Fxa In Complex With 45.
pdb|2BOH|A Chain A, Crystal Structure Of Factor Xa In Complex With Compound
"1"
pdb|2CJI|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J2U|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J34|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J38|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J4I|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J94|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2J95|B Chain B, Crystal Structure Of A Human Factor Xa Inhibitor Complex
pdb|2UWL|B Chain B, Selective And Dual Action Orally Active Inhibitors Of
Thrombin And Factor Xa
pdb|2UWO|B Chain B, Selective And Dual Action Orally Active Inhibitors Of
Thrombin And Factor Xa
pdb|2UWP|B Chain B, Factor Xa Inhibitor Complex
pdb|2VH0|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Biaryl Pyrrolidin-2-Ones Incorporating Basic
Heterocyclic Motifs
pdb|2VH6|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Biaryl P4 Motifs
pdb|2WYG|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Monoaryl P4 Motifs
pdb|2WYJ|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Monoaryl P4 Motifs
pdb|2Y7X|B Chain B, The Discovery Of Potent And Long-Acting Oral Factor Xa
Inhibitors With Tetrahydroisoquinoline And Benzazepine
P4 Motifs
pdb|2Y7Z|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y80|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y81|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
pdb|2Y82|B Chain B, Structure And Property Based Design Of Factor Xa
Inhibitors: Pyrrolidin-2-Ones With Aminoindane And
Phenylpyrrolidine P4 Motifs
Length = 134
Score = 27.7 bits (60), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 10/56 (17%)
Query: 212 DVDECMNYPPICNNNADCINRPGTYQCQCKRGFSGDGFNCEEGKYCLVVGITLCKM 267
D D+C P C N C + G Y C C GF EGK C + LC +
Sbjct: 41 DGDQCETSP--CQNQGKCKDGLGEYTCTCLEGF--------EGKNCELFTRKLCSL 86
>pdb|2KL7|A Chain A, Solution Nmr Structure Of The Egf-Like 1 Domain Of Human
Fibulin-4. Northeast Structural Genomics Target Hr6275
Length = 71
Score = 27.7 bits (60), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 211 TDVDECMNYPPICNNNADCINRPGTYQC 238
+DV+EC+ P C CIN G Y C
Sbjct: 1 SDVNECLTIPEACKGEMKCINHYGGYLC 28
>pdb|3FBY|A Chain A, The Crystal Structure Of The Signature Domain Of Cartilage
Oligomeric Matrix Protein.
pdb|3FBY|B Chain B, The Crystal Structure Of The Signature Domain Of Cartilage
Oligomeric Matrix Protein.
pdb|3FBY|C Chain C, The Crystal Structure Of The Signature Domain Of Cartilage
Oligomeric Matrix Protein
Length = 551
Score = 27.7 bits (60), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 125 CHKNAMCFNEI-GSYSCQCRPGFTGNGHQCTEIT 157
CH++A C E GS SC C G+ GNG C T
Sbjct: 29 CHEHADCVLERDGSRSCVCAVGWAGNGILCGRDT 62
Score = 27.3 bits (59), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 220 PPICNNNADCI-NRPGTYQCQCKRGFSGDGFNC 251
P C+ +ADC+ R G+ C C G++G+G C
Sbjct: 26 PSECHEHADCVLERDGSRSCVCAVGWAGNGILC 58
>pdb|2GY5|A Chain A, Tie2 Ligand-Binding Domain Crystal Structure
pdb|2GY7|B Chain B, Angiopoietin-2TIE2 COMPLEX CRYSTAL STRUCTURE
Length = 423
Score = 27.7 bits (60), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 51/141 (36%), Gaps = 32/141 (22%)
Query: 117 ECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGN-----------GHQCTEITVPQTGPTS 165
ECN C N +C + G C C PGF G G C E Q G S
Sbjct: 197 ECNHLCTACMNNGVCHEDTGE--CICPPGFMGRTCEKACELHTFGRTCKERCSGQEGCKS 254
Query: 166 P--CESDPRACNPPHSTCTNLTDYRTCN--CDPGYQKDYLDDRRVAFVCTDVDECMNYPP 221
C DP C +C CN C PG+ Y D ++ C + +
Sbjct: 255 YVFCLPDPYGC-----SCATGWKGLQCNEACHPGF---YGPDCKLRCSCNNGE------- 299
Query: 222 ICNNNADCINRPGTYQCQCKR 242
+C+ C+ PG QC+R
Sbjct: 300 MCDRFQGCLCSPGWQGLQCER 320
>pdb|1G1T|A Chain A, Crystal Structure Of E-Selectin LectinEGF DOMAINS
Complexed With Slex
Length = 157
Score = 27.7 bits (60), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 125 CHKNAMCFNEIGSYSCQCRPGFTG 148
C + C I +Y+C+C PGF+G
Sbjct: 127 CSGHGECVETINNYTCKCDPGFSG 150
>pdb|1WHE|A Chain A, Coagulation Factor, Nmr, 20 Structures
pdb|1WHF|A Chain A, Coagulation Factor, Nmr, 15 Structures
Length = 86
Score = 27.7 bits (60), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Query: 212 DVDECMNYPPICNNNADCINRPGTYQCQCKRGFSGDGFNCE 252
D D+C +P C N C G Y C C GF G NCE
Sbjct: 46 DGDQCEGHP--CLNQGHCKXGIGDYTCTCAEGFEGK--NCE 82
>pdb|1ESL|A Chain A, Insight Into E-Selectin(Slash)ligand Interaction From The
Crystal Structure And Mutagenesis Of The Lec(Slash)egf
Domains
Length = 162
Score = 27.7 bits (60), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 125 CHKNAMCFNEIGSYSCQCRPGFTG 148
C + C I +Y+C+C PGF+G
Sbjct: 127 CSGHGECVETINNYTCKCDPGFSG 150
>pdb|3H5C|B Chain B, X-Ray Structure Of Protein Z-Protein Z Inhibitor Complex
Length = 317
Score = 27.3 bits (59), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 29/78 (37%), Gaps = 21/78 (26%)
Query: 125 CHKNAMCFNEIGSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDPRACNPPHST---- 180
C N C + I Y+C C PG+ G S CE C+P +
Sbjct: 13 CLHNGSCQDSIWGYTCTCSPGYEG----------------SNCELAKNECHPERTDGCQH 56
Query: 181 -CTNLTDYRTCNCDPGYQ 197
C + TC+C GY+
Sbjct: 57 FCLPGQESYTCSCAQGYR 74
>pdb|1SZB|A Chain A, Crystal Structure Of The Human Mbl-Associated Protein 19
(Map19)
pdb|1SZB|B Chain B, Crystal Structure Of The Human Mbl-Associated Protein 19
(Map19)
Length = 170
Score = 27.3 bits (59), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 10/62 (16%)
Query: 191 NCDPGYQKDYLDDR-----RVAFVCTDVDECMNYP---PICNNNADCINRPGTYQCQCKR 242
+ D ++ DY +++ + D+DEC P P C+++ C N G + C C+
Sbjct: 97 SLDITFRSDYSNEKPFTGFEAFYAAEDIDECQVAPGEAPTCDHH--CHNHLGGFYCSCRA 154
Query: 243 GF 244
G+
Sbjct: 155 GY 156
>pdb|1FAX|L Chain L, Coagulation Factor Xa Inhibitor Complex
Length = 96
Score = 27.3 bits (59), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 10/56 (17%)
Query: 212 DVDECMNYPPICNNNADCINRPGTYQCQCKRGFSGDGFNCEEGKYCLVVGITLCKM 267
D D+C P C N C + G Y C C GF EGK C + LC +
Sbjct: 3 DGDQCETSP--CQNQGKCKDGLGEYTCTCLEGF--------EGKNCELFTRKLCSL 48
>pdb|1G2L|B Chain B, Factor Xa Inhibitor Complex
pdb|1G2M|B Chain B, Factor Xa Inhibitor Complex
Length = 94
Score = 27.3 bits (59), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 10/56 (17%)
Query: 212 DVDECMNYPPICNNNADCINRPGTYQCQCKRGFSGDGFNCEEGKYCLVVGITLCKM 267
D D+C P C N C + G Y C C GF EGK C + LC +
Sbjct: 1 DGDQCETSP--CQNQGKCKDGLGEYTCTCLEGF--------EGKNCELFTRKLCSL 46
>pdb|1HUC|B Chain B, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1HUC|D Chain D, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1CSB|B Chain B, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|1CSB|E Chain E, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|2IPP|B Chain B, Crystal Structure Of The Tetragonal Form Of Human Liver
Cathepsin B
Length = 205
Score = 27.3 bits (59), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 5/45 (11%)
Query: 166 PCESDPRACNPPHSTCTNLTDYRTCN--CDPGYQKDYLDDRRVAF 208
PCE PP CT D C+ C+PGY Y D+ +
Sbjct: 58 PCEHHVNGSRPP---CTGEGDTPKCSKICEPGYSPTYKQDKHYGY 99
>pdb|1ITO|A Chain A, Crystal Structure Analysis Of Bovine Spleen Cathepsin B-
E64c Complex
pdb|2DC6|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca073 Complex
pdb|2DC7|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca042 Complex
pdb|2DC8|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca059 Complex
pdb|2DC9|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca074me Complex
pdb|2DCA|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca075 Complex
pdb|2DCB|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca076 Complex
pdb|2DCC|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca077 Complex
pdb|2DCD|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca078 Complex
Length = 256
Score = 27.3 bits (59), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 5/44 (11%)
Query: 166 PCESDPRACNPPHSTCTNLTDYRTCN--CDPGYQKDYLDDRRVA 207
PCE PP CT D C+ C+PGY Y +D+
Sbjct: 107 PCEHHVNGSRPP---CTGEGDTPKCSKTCEPGYSPSYKEDKHFG 147
>pdb|1P0S|L Chain L, Crystal Structure Of Blood Coagulation Factor Xa In
Complex With Ecotin M84r
Length = 138
Score = 27.3 bits (59), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 10/56 (17%)
Query: 212 DVDECMNYPPICNNNADCINRPGTYQCQCKRGFSGDGFNCEEGKYCLVVGITLCKM 267
D D+C P C N C + G Y C C GF EGK C + LC +
Sbjct: 46 DGDQCETSP--CQNQGKCKDGLGEYTCTCLEGF--------EGKNCELFTRKLCSL 91
>pdb|3ENS|A Chain A, Crystal Structure Of Human Fxa In Complex With Methyl
(2z)-3-[(3-
Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-(2-
oxo-2- Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate
pdb|3ENS|C Chain C, Crystal Structure Of Human Fxa In Complex With Methyl
(2z)-3-[(3-
Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-(2-
oxo-2- Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate
pdb|3HPT|A Chain A, Crystal Structure Of Human Fxa In Complex With
(S)-2-Cyano-1-(2-
Methylbenzofuran-5-Yl)-3-(2-Oxo-1-(2-Oxo-2-(Pyrrolidin-
1-Yl)ethyl) Azepan-3-Yl)guanidine
pdb|3HPT|C Chain C, Crystal Structure Of Human Fxa In Complex With
(S)-2-Cyano-1-(2-
Methylbenzofuran-5-Yl)-3-(2-Oxo-1-(2-Oxo-2-(Pyrrolidin-
1-Yl)ethyl) Azepan-3-Yl)guanidine
pdb|3K9X|A Chain A, X-Ray Crystal Structure Of Human Fxa In Complex With
(S)-N-((2- Methylbenzofuran-5-Ylamino)(2-Oxo-1-(2-Oxo-2-
(Pyrrolidin-1-Yl) Ethyl)azepan-3-
Ylamino)methylene)nicotinamide
pdb|3K9X|C Chain C, X-Ray Crystal Structure Of Human Fxa In Complex With
(S)-N-((2- Methylbenzofuran-5-Ylamino)(2-Oxo-1-(2-Oxo-2-
(Pyrrolidin-1-Yl) Ethyl)azepan-3-
Ylamino)methylene)nicotinamide
pdb|3SW2|A Chain A, X-Ray Crystal Structure Of Human Fxa In Complex With
6-Chloro-N-((3s)-
2-Oxo-1-(2-Oxo-2-((5s)-8-Oxo-5,6-Dihydro-1h-1,
5-Methanopyrido[1,2-
A][1,5]diazocin-3(2h,4h,
8h)-Yl)ethyl)piperidin-3-Yl)naphthalene-2- Sulfonamide
Length = 94
Score = 27.3 bits (59), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 10/56 (17%)
Query: 212 DVDECMNYPPICNNNADCINRPGTYQCQCKRGFSGDGFNCEEGKYCLVVGITLCKM 267
D D+C P C N C + G Y C C GF EGK C + LC +
Sbjct: 2 DGDQCETSP--CQNQGKCKDGLGEYTCTCLEGF--------EGKNCELFTRKLCSL 47
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.458
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,768,890
Number of Sequences: 62578
Number of extensions: 436693
Number of successful extensions: 1123
Number of sequences better than 100.0: 132
Number of HSP's better than 100.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 81
Number of HSP's that attempted gapping in prelim test: 898
Number of HSP's gapped (non-prelim): 252
length of query: 286
length of database: 14,973,337
effective HSP length: 98
effective length of query: 188
effective length of database: 8,840,693
effective search space: 1662050284
effective search space used: 1662050284
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)