RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5750
(286 letters)
>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB
domain, disease mutation, extracellular matrix,
polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A
Length = 162
Score = 89.0 bits (221), Expect = 5e-22
Identities = 32/165 (19%), Positives = 51/165 (30%), Gaps = 29/165 (17%)
Query: 90 TCICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGN 149
C C F+ GC D N C+ + + G +C G +
Sbjct: 25 ICDCPPDFE------LNPTRVGCVDTRSGN-----CYLDIRPRGDNGDTACSNEIGVGVS 73
Query: 150 GHQCTEITVPQTGPTSPCESDPRACNPPHSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFV 209
C P P C G++ + + +
Sbjct: 74 KASCCCSLG-------KAWGTPCEMCP---AVNTSEYKILCPGGEGFRPNP-----ITVI 118
Query: 210 CTDVDECMNYPPICNNNADCINRPGTYQCQCKRGF--SGDGFNCE 252
D+DEC P +C CIN G++QC+C G+ + D C+
Sbjct: 119 LEDIDECQELPGLC-QGGKCINTFGSFQCRCPTGYYLNEDTRVCD 162
Score = 73.5 bits (181), Expect = 3e-16
Identities = 27/142 (19%), Positives = 36/142 (25%), Gaps = 26/142 (18%)
Query: 114 DINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDPRA 173
D+NEC T C N GSY C C P F N + + D R+
Sbjct: 2 DVNECLDPTTCIS--GNCVNTPGSYICDCPPDFELNPTRVGCV-------------DTRS 46
Query: 174 CN-PPHSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCINR 232
N C+ + G C + + P C
Sbjct: 47 GNCYLDIRPRGDNGDTACSNEIGVGVS--KASC----CCSLGKAWGTP--CEMCPAVNTS 98
Query: 233 PGTYQCQCKRGF--SGDGFNCE 252
C GF + E
Sbjct: 99 EYKILCPGGEGFRPNPITVILE 120
Score = 55.8 bits (135), Expect = 7e-10
Identities = 19/90 (21%), Positives = 27/90 (30%), Gaps = 7/90 (7%)
Query: 65 TVNDDPCKNFFCVANSSCIVEDDKPTCICNRGFQQLYSEDRLQDDFGCFDINECNAGTDL 124
+ C + + K C GF+ DI+EC L
Sbjct: 78 CCSLGKAWGTPCEMCPAVNTSEYKILCPGGEGFR------PNPITVILEDIDECQELPGL 131
Query: 125 CHKNAMCFNEIGSYSCQCRPGFTGNGHQCT 154
C C N GS+ C+C G+ N
Sbjct: 132 CQ-GGKCINTFGSFQCRCPTGYYLNEDTRV 160
Score = 51.6 bits (124), Expect = 2e-08
Identities = 19/126 (15%), Positives = 28/126 (22%), Gaps = 21/126 (16%)
Query: 76 CVANSSCIVEDDKPTCICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLCHKNAMCFNEI 135
C + ++ C G + C + + C
Sbjct: 49 CYLDIRPRGDNGDTACSNEIGVG-------VSKASCCCSLGKAWGTP--CEMCPAVNTSE 99
Query: 136 GSYSCQCRPGFTGN--GHQCTEITVPQTGPTSPCESDPRACNPPHSTCTNLTDYRTCNCD 193
C GF N +I C+ P C C N C C
Sbjct: 100 YKILCPGGEGFRPNPITVILEDIDE--------CQELPGLC--QGGKCINTFGSFQCRCP 149
Query: 194 PGYQKD 199
GY +
Sbjct: 150 TGYYLN 155
Score = 40.0 bits (94), Expect = 2e-04
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 211 TDVDECMNYPPICNNNADCINRPGTYQCQCKRGFSGDGFNCE 252
TDV+EC++ P + +C+N PG+Y C C F +
Sbjct: 1 TDVNECLD--PTTCISGNCVNTPGSYICDCPPDFELNPTRVG 40
>2bou_A EGF-like module containing mucin-like hormone receptor-like 2
precursor; CD97, CD55, 7TM, calcium-binding, cell
adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB:
2bo2_A 2box_A
Length = 143
Score = 87.2 bits (216), Expect = 1e-21
Identities = 34/149 (22%), Positives = 55/149 (36%), Gaps = 24/149 (16%)
Query: 114 DINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGN-------GHQCTEITVPQTGPTSP 166
D C C +++ C + + +C+C PGF+ C +I +
Sbjct: 1 DSRGCA---RWCPQDSSC---VNATACRCNPGFSSFSEIITTPMETCDDI--------NE 46
Query: 167 CESDPRACNPPHSTCTNLTDYRTCNCDPGYQKDYLDDRRVA---FVCTDVDECMNYPPIC 223
C + + S C N C C PGY+ C DVDEC + C
Sbjct: 47 CATLSKVSCGKFSDCWNTEGSYDCVCSPGYEPVSGAKTFKNESENTCQDVDECSSGQHQC 106
Query: 224 NNNADCINRPGTYQCQCKRGFSGDGFNCE 252
+++ C N G+Y C+C+ G+
Sbjct: 107 DSSTVCFNTVGSYSCRCRPGWKPRHGIPN 135
Score = 66.4 bits (162), Expect = 7e-14
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 76 CVANSSCIVEDDKPTCICNRGFQQLYSEDRLQ--DDFGCFDINECNAGTDLCHKNAMCFN 133
C S C + C+C+ G++ + + + C D++EC++G C + +CFN
Sbjct: 55 CGKFSDCWNTEGSYDCVCSPGYEPVSGAKTFKNESENTCQDVDECSSGQHQCDSSTVCFN 114
Query: 134 EIGSYSCQCRPGFTGNGHQCT 154
+GSYSC+CRPG+
Sbjct: 115 TVGSYSCRCRPGWKPRHGIPN 135
>2vj3_A Neurogenic locus notch homolog protein 1; transcription,
metal-binding, transmembrane, developmental protein,
notch signaling pathway; 2.60A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A
2rr2_A*
Length = 135
Score = 78.0 bits (193), Expect = 3e-18
Identities = 41/142 (28%), Positives = 66/142 (46%), Gaps = 24/142 (16%)
Query: 112 CFDINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDP 171
D++EC+ G + C C N +GS+ CQC G+TG +C + C S+P
Sbjct: 2 AQDVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGP--RCEI-------DVNECVSNP 52
Query: 172 RACNPPHSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCIN 231
C +TC + C C PGY+ + + + DEC + P C +N C++
Sbjct: 53 --CQ-NDATCLDQIGEFQCICMPGYEGVHCE--------VNTDECASSP--CLHNGRCLD 99
Query: 232 RPGTYQCQCKRGFSGDGFNCEE 253
+ +QC+C GF+G C+
Sbjct: 100 KINEFQCECPTGFTGH--LCQV 119
Score = 56.5 bits (137), Expect = 2e-10
Identities = 35/163 (21%), Positives = 59/163 (36%), Gaps = 38/163 (23%)
Query: 65 TVNDDPCKNFFCVANSSCIVEDDKPTCICNRGFQQLYSEDRLQDDFGCFDINECNAGTDL 124
++ +PC++ CI C C +G+ E D+NEC ++
Sbjct: 9 SLGANPCEH-----AGKCINTLGSFECQCLQGYTGPRCEI---------DVNECV--SNP 52
Query: 125 CHKNAMCFNEIGSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDPRACNPPHSTCTNL 184
C +A C ++IG + C C PG+ G C T C S P C + C +
Sbjct: 53 CQNDATCLDQIGEFQCICMPGYEG--VHCEV-------NTDECASSP--CLH-NGRCLDK 100
Query: 185 TDYRTCNCDPGYQKDYLDDRRVAFVC-TDVDECMNYPPICNNN 226
+ C C G+ C D+ ++ + N+
Sbjct: 101 INEFQCECPTGFTGHL---------CQVDLHHILDAQKMVWNH 134
>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease
mutation, craniosynostosis, extracellular matrix,
fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}
Length = 147
Score = 75.5 bits (186), Expect = 4e-17
Identities = 37/154 (24%), Positives = 53/154 (34%), Gaps = 26/154 (16%)
Query: 114 DINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGNGHQCT-----EITVPQTGPTSPCE 168
DI+EC + N +C N GS+ C+C T + + + T QT CE
Sbjct: 3 DIDECESS---PCINGVCKNSPGSFICECSSESTLDPTKTICIETIKGTCWQTVIDGRCE 59
Query: 169 SDPRAC---------NPPHSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNY 219
+ C GY C D+DEC +
Sbjct: 60 ININGATLKSQCCSSLGAAWGSPCTLCQVDPICGKGYS---RIKGTQ---CEDIDECEVF 113
Query: 220 PPICNNNADCINRPGTYQCQCKRGF--SGDGFNC 251
P +C N C+N G+++CQC G G C
Sbjct: 114 PGVCKN-GLCVNTRGSFKCQCPSGMTLDATGRIC 146
Score = 54.3 bits (131), Expect = 2e-09
Identities = 25/95 (26%), Positives = 36/95 (37%), Gaps = 12/95 (12%)
Query: 61 THSSTVNDDPCKNFFCVANSSCIVEDDKPTCICNRGFQQLYSEDRLQDDFGCFDINECNA 120
+ +T+ C + S C + IC +G+ C DI+EC
Sbjct: 62 INGATLKSQCCSSLGAAWGSPC--TLCQVDPICGKGYS-------RIKGTQCEDIDECEV 112
Query: 121 GTDLCHKNAMCFNEIGSYSCQCRPGFTG--NGHQC 153
+C N +C N GS+ CQC G T G C
Sbjct: 113 FPGVCK-NGLCVNTRGSFKCQCPSGMTLDATGRIC 146
Score = 33.9 bits (78), Expect = 0.020
Identities = 9/76 (11%), Positives = 17/76 (22%), Gaps = 16/76 (21%)
Query: 178 HSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCINRPGTYQ 237
+ C N C C D + + C + + C +
Sbjct: 14 NGVCKNSPGSFICECSSESTLD--PTKTI---CIETIKG-----------TCWQTVIDGR 57
Query: 238 CQCKRGFSGDGFNCEE 253
C+ + C
Sbjct: 58 CEININGATLKSQCCS 73
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain,
disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB:
2rhp_A*
Length = 634
Score = 79.7 bits (196), Expect = 6e-17
Identities = 40/153 (26%), Positives = 59/153 (38%), Gaps = 25/153 (16%)
Query: 114 DINECNAGTDLCHKNAMCFN-EIGSYSCQ-CRPGFTGNGHQCTEITVPQTGPTSPCESDP 171
D + C + C A C + GS+SC C GF GNG C ++ C P
Sbjct: 2 DPDGCLSNP--CFPGAQCSSFPDGSWSCGFCPVGFLGNGTHCEDL--------DECALVP 51
Query: 172 RACNP--PHSTCTNLTDYRTC-NCDPGYQKDYLDDRRVAF------VCTDVDECMNYPPI 222
C C N C C P Y+ + + VC + C +
Sbjct: 52 DICFSTSKVPRCVNTQPGFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCEPENPCKDKTHN 111
Query: 223 CNNNADCINRP----GTYQCQCKRGFSGDGFNC 251
C+ +A+CI Y+C+C+ G++GDG C
Sbjct: 112 CHKHAECIYLGHFSDPMYKCECQTGYAGDGLIC 144
Score = 61.2 bits (148), Expect = 1e-10
Identities = 45/204 (22%), Positives = 64/204 (31%), Gaps = 29/204 (14%)
Query: 69 DPCKNFFCVANSSCI-VEDDKPTCI-CNRGFQQLYSEDRLQDDFGCFDINECNAGTDLCH 126
D C + C + C D +C C GF + C D++EC D+C
Sbjct: 4 DGCLSNPCFPGAQCSSFPDGSWSCGFCPVGFLG--------NGTHCEDLDECALVPDICF 55
Query: 127 KNA---MCFNEIGSYSC-QCRPGFTGNGHQCTEITVPQTG-----PTSPCESDPRACNPP 177
+ C N + C C P + GN + +T P +PC+ C
Sbjct: 56 STSKVPRCVNTQPGFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCEPENPCKDKTHNC-HK 114
Query: 178 HSTCTNLTDYR----TCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCINRP 233
H+ C L + C C GY D L +D+D N +C NA
Sbjct: 115 HAECIYLGHFSDPMYKCECQTGYAGDGLICGE----DSDLDGWPNLNLVCATNATYHCIK 170
Query: 234 GTYQCQCKRGFSGDGFNCEEGKYC 257
D G C
Sbjct: 171 DNCPHLPN-SGQEDFDKDGIGDAC 193
Score = 53.1 bits (127), Expect = 4e-08
Identities = 35/194 (18%), Positives = 60/194 (30%), Gaps = 23/194 (11%)
Query: 65 TVNDDPCKNFFCVANSSCIVEDDKPTCI-CNRGFQ-----QLYSEDRLQDDFGCFDINEC 118
+ D C F C+ C+ C ++ + E + C N C
Sbjct: 48 ALVPDIC--FSTSKVPRCVNTQPGFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCEPENPC 105
Query: 119 NAGTDLCHKNAMCFNE----IGSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDPRAC 174
T CHK+A C Y C+C+ G+ G+G C E + P + A
Sbjct: 106 KDKTHNCHKHAECIYLGHFSDPMYKCECQTGYAGDGLICGEDS---DLDGWPNLNLVCAT 162
Query: 175 NPPHSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCINRPG 234
N + + Q+D+ D + D+ + + + +C
Sbjct: 163 NA----TYHCIKDNCPHLPNSGQEDFDKD----GIGDACDDDDDNDGVTDEKDNCQLLFN 214
Query: 235 TYQCQCKRGFSGDG 248
Q + GD
Sbjct: 215 PRQADYDKDEVGDR 228
>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A
{Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*
Length = 195
Score = 69.8 bits (171), Expect = 1e-14
Identities = 26/147 (17%), Positives = 38/147 (25%), Gaps = 23/147 (15%)
Query: 112 CFDINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDP 171
D ++C T C C + +G Y+C C GF G + C D
Sbjct: 39 YKDGDQCE--TSPCQNQGKCKDGLGEYTCTCLEGFEGKNCELFTR--------KLCSLDN 88
Query: 172 RACNPPHSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCIN 231
C+ C + C+C GY YP C
Sbjct: 89 GDCD---QFCHEEQNSVVCSCARGYTLADNG--------KACIPTGPYP--CGKQTLERR 135
Query: 232 RPGTYQCQCKRGFSGDGFNCEEGKYCL 258
+ Q G + D +
Sbjct: 136 KRSVAQATSSSGEAPDSITWKPYDAAD 162
Score = 53.6 bits (129), Expect = 6e-09
Identities = 29/181 (16%), Positives = 42/181 (23%), Gaps = 35/181 (19%)
Query: 66 VNDDPCKNFFCVANSSCIVEDDKPTCICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLC 125
+ D C+ C C + TC C GF+ E + + D
Sbjct: 40 KDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCE---------LFTRKLCS-LDNG 89
Query: 126 HKNAMCFNEIGSYSCQCRPGFTGN--GHQCTEITVPQTGPTSPCESDPRACNPPHSTCTN 183
+ C E S C C G+T G C PC +
Sbjct: 90 DCDQFCHEEQNSVVCSCARGYTLADNGKACIPTG------PYPCGKQ--------TLERR 135
Query: 184 LTDYRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCINRPGTYQCQCKRG 243
G D + D P N D ++ T +
Sbjct: 136 KRSVAQATSSSGEAPDSIT-------WKPYDAADLDP--TENPFDLLDFNQTQPERGDNN 186
Query: 244 F 244
Sbjct: 187 L 187
Score = 27.8 bits (62), Expect = 3.4
Identities = 6/82 (7%), Positives = 15/82 (18%), Gaps = 10/82 (12%)
Query: 66 VNDDPCKNFFCVANSSCIVEDDKPTCICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLC 125
P + C + + + G D + + D
Sbjct: 117 KACIPTGPYPCGKQTLERRKRSVAQATSSSGE--------APDSITWKPYDAAD--LDPT 166
Query: 126 HKNAMCFNEIGSYSCQCRPGFT 147
+ + + T
Sbjct: 167 ENPFDLLDFNQTQPERGDNNLT 188
>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant
complex, antifibrinolytic complex, hydrolase-hydrolase
inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A
1adx_A 2adx_A
Length = 118
Score = 67.4 bits (165), Expect = 2e-14
Identities = 34/139 (24%), Positives = 44/139 (31%), Gaps = 27/139 (19%)
Query: 114 DINECNAGTDLCHKNAMCFNE-IGSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDPR 172
++ C C SY C C GF H+
Sbjct: 3 PVDPCFRANC----EYQCQPLDQTSYLCVCAEGFAPIPHEPH------------RCQMFC 46
Query: 173 ACNPPHSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCINR 232
+ C T C C GY LDD + CTD+DEC N C+ C N
Sbjct: 47 NQTACPADCDPNTQAS-CECPEGYI---LDDGFI---CTDIDECEN-GGFCS--GVCHNL 96
Query: 233 PGTYQCQCKRGFSGDGFNC 251
PGT++C C + G
Sbjct: 97 PGTFECICGPDSALAGQIG 115
Score = 46.6 bits (111), Expect = 6e-07
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 10/65 (15%)
Query: 90 TCICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGN 149
+C C G+ L D F C DI+EC G C + +C N G++ C C P
Sbjct: 62 SCECPEGYI-------LDDGFICTDIDECENG-GFC--SGVCHNLPGTFECICGPDSALA 111
Query: 150 GHQCT 154
G T
Sbjct: 112 GQIGT 116
Score = 37.7 bits (88), Expect = 7e-04
Identities = 23/117 (19%), Positives = 31/117 (26%), Gaps = 25/117 (21%)
Query: 90 TCICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFT-G 148
C+C GF + + C A C N SC+C G+
Sbjct: 25 LCVCAEGFAPI-----PHEPHRCQMFCNQTACPADCDPN-------TQASCECPEGYILD 72
Query: 149 NGHQCTEITVPQTGPTSPCESDPRACNPPHSTCTNLTDYRTCNCDPGYQKDYLDDRR 205
+G CT+I + G C NL C C P
Sbjct: 73 DGFICTDIDECENG------------GFCSGVCHNLPGTFECICGPDSALAGQIGTD 117
Score = 29.3 bits (66), Expect = 0.56
Identities = 10/43 (23%), Positives = 12/43 (27%), Gaps = 5/43 (11%)
Query: 212 DVDECMNYPPICNNNADCINR-PGTYQCQCKRGFSGDGFNCEE 253
VD C C C +Y C C GF+
Sbjct: 3 PVDPCFRAN--CEYQ--CQPLDQTSYLCVCAEGFAPIPHEPHR 41
>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome,
connective tissue, extracellular matrix, structural
protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
Length = 86
Score = 61.9 bits (151), Expect = 9e-13
Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 9/87 (10%)
Query: 167 CESDPRACNPPHSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNN 226
C P C C N C CD GY+ ++ + C D+DEC P +C
Sbjct: 6 CRISPDLC--GRGQCVNTPGDFECKCDEGYESGFMMMKN----CMDIDECQRDPLLCRG- 58
Query: 227 ADCINRPGTYQCQCKRGF--SGDGFNC 251
C N G+Y+C+C G S + C
Sbjct: 59 GVCHNTEGSYRCECPPGHQLSPNISAC 85
Score = 54.6 bits (132), Expect = 4e-10
Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 8/66 (12%)
Query: 90 TCICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFT-- 147
C C+ G++ + C DI+EC LC +C N GSY C+C PG
Sbjct: 26 ECKCDEGYESGFM-----MMKNCMDIDECQRDPLLCR-GGVCHNTEGSYRCECPPGHQLS 79
Query: 148 GNGHQC 153
N C
Sbjct: 80 PNISAC 85
Score = 44.2 bits (105), Expect = 2e-06
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 211 TDVDECMNYPPICNNNADCINRPGTYQCQCKRGFSGDGFN 250
TD+DEC P +C C+N PG ++C+C G+
Sbjct: 1 TDIDECRISPDLCGR-GQCVNTPGDFECKCDEGYESGFMM 39
>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor
complex, PCSK9, proprotein converta low-density
lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB:
2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A
1i0u_A 1hj7_A
Length = 107
Score = 62.3 bits (152), Expect = 1e-12
Identities = 31/128 (24%), Positives = 45/128 (35%), Gaps = 24/128 (18%)
Query: 127 KNAMCFNEIGSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDPRACNPPHSTCTNLTD 186
K+ + + Y G T C + C+ C +L
Sbjct: 2 KHHHHHHPMSDYDIPTTENLYFQGAMGTN----------ECLDNNGGCS---YVCNDLKI 48
Query: 187 YRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCINRPGTYQCQCKRGF-- 244
C C G+Q RR C D+DEC + P C + C+N G Y+CQC+ GF
Sbjct: 49 GYECLCPDGFQLV--AQRR----CEDIDECQD-PDTC--SQLCVNLEGGYKCQCEEGFQL 99
Query: 245 SGDGFNCE 252
C+
Sbjct: 100 DPHTKACK 107
Score = 43.9 bits (104), Expect = 3e-06
Identities = 23/67 (34%), Positives = 27/67 (40%), Gaps = 12/67 (17%)
Query: 89 PTCICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFT- 147
C+C GFQ L C DI+EC D C +C N G Y CQC GF
Sbjct: 50 YECLCPDGFQ-------LVAQRRCEDIDEC-QDPDTCS--QLCVNLEGGYKCQCEEGFQL 99
Query: 148 -GNGHQC 153
+ C
Sbjct: 100 DPHTKAC 106
>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2
g.3.11.5 PDB: 1h4u_A
Length = 285
Score = 65.2 bits (158), Expect = 2e-12
Identities = 26/145 (17%), Positives = 45/145 (31%), Gaps = 16/145 (11%)
Query: 114 DINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGNGHQCTEITVPQT--GPTSPCESDP 171
C C +A C + + C+C +TGNG QC PQ G
Sbjct: 4 AQQTCANNRHQCSVHAECRDYATGFCCRCVANYTGNGRQCVAEGSPQRVNGKVKGRIFVG 63
Query: 172 RACNPPHSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCIN 231
+ P T+L Y ++ R + + E + Y I
Sbjct: 64 SSQVPVVFENTDLHSYVV-----------MNHGRSYTAISTIPETVGYSL---LPLAPIG 109
Query: 232 RPGTYQCQCKRGFSGDGFNCEEGKY 256
+ ++ +GF+ G++
Sbjct: 110 GIIGWMFAVEQDGFKNGFSITGGEF 134
Score = 47.1 bits (111), Expect = 2e-06
Identities = 11/54 (20%), Positives = 21/54 (38%)
Query: 212 DVDECMNYPPICNNNADCINRPGTYQCQCKRGFSGDGFNCEEGKYCLVVGITLC 265
C N C+ +A+C + + C+C ++G+G C V +
Sbjct: 4 AQQTCANNRHQCSVHAECRDYATGFCCRCVANYTGNGRQCVAEGSPQRVNGKVK 57
Score = 40.1 bits (93), Expect = 4e-04
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 1 GVFNYSAELIF-STGQRLHVQEEFFGHDVYDQLKMQGSIQGTAPSIAVGVSPVLEDLQQE 59
G F AE+ F +L ++++F G D + L + ++G P I G S +E +
Sbjct: 132 GEFTRQAEVTFLGHPGKLVLKQQFSGIDEHGHLTISTELEGRVPQIPYGASVHIEPYTEL 191
Query: 60 FTHSS 64
+ +SS
Sbjct: 192 YHYSS 196
Score = 27.8 bits (61), Expect = 4.2
Identities = 13/92 (14%), Positives = 18/92 (19%), Gaps = 9/92 (9%)
Query: 72 KNFFCVANSSCIVEDDKPTCICNRGFQ---------QLYSEDRLQDDFGCFDINECNAGT 122
CVA S + K G L+S + I+
Sbjct: 39 NGRQCVAEGSPQRVNGKVKGRIFVGSSQVPVVFENTDLHSYVVMNHGRSYTAISTIPETV 98
Query: 123 DLCHKNAMCFNEIGSYSCQCRPGFTGNGHQCT 154
I + NG T
Sbjct: 99 GYSLLPLAPIGGIIGWMFAVEQDGFKNGFSIT 130
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD
finger, cell adhesion, innate immunity, extracellular MA
protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Length = 143
Score = 60.9 bits (148), Expect = 7e-12
Identities = 32/141 (22%), Positives = 49/141 (34%), Gaps = 27/141 (19%)
Query: 125 CHKNAMCFNEI--GSYSCQCRPGFTGNGHQCTE-----ITVPQTGPTSPCESDP----RA 173
C +C + GS+SC+C GFT C+ + PC +P
Sbjct: 8 CENGGICLPGLADGSFSCECPDGFTDP--NCSSVVEVASDEEEPTSAGPCTPNPCHNGGT 65
Query: 174 CNPPHSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFVC-TDVDECMNYPPICNNNADCINR 232
C + + C C G+ + C +++EC P C N C +
Sbjct: 66 CEISEAYRGDTFIGYVCKCPRGFNGIH---------CQHNINECEVEP--CKNGGICTDL 114
Query: 233 PGTYQCQCKRGFSGDGFNCEE 253
Y C+C F G NC+
Sbjct: 115 VANYSCECPGEFMGR--NCQY 133
Score = 37.8 bits (88), Expect = 0.001
Identities = 21/102 (20%), Positives = 37/102 (36%), Gaps = 18/102 (17%)
Query: 54 EDLQQEFTHSSTVNDDPCKNFFCVANSSCIVEDDKP-------TCICNRGFQQLYSEDRL 106
++ + PC C +C + + C C RGF ++ +
Sbjct: 38 SVVEVASDEEEPTSAGPCTPNPCHNGGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQH-- 95
Query: 107 QDDFGCFDINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTG 148
+INEC + C +C + + +YSC+C F G
Sbjct: 96 -------NINECE--VEPCKNGGICTDLVANYSCECPGEFMG 128
>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell
adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A
1z3g_A
Length = 186
Score = 61.6 bits (148), Expect = 1e-11
Identities = 31/177 (17%), Positives = 47/177 (26%), Gaps = 12/177 (6%)
Query: 76 CVANSSCIVEDDKPTCICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLCHKNAMCFNEI 135
N + + C+CN G L + + + G ++
Sbjct: 12 ICXNGQLVQMSNHFXCMCNEGLVHLSENTCEEXNECXXETLGXACGEFGQCIENPDPAQV 71
Query: 136 GSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDPRACNPPHSTCTNLTDYRTCNCDPG 195
Y C C G+T C + + C+C G
Sbjct: 72 NMYXCGCIEGYTLXEDTCV--------LDVCQYXNCGESGECIVEYLSEIQSAGCSCAIG 123
Query: 196 YQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCINRPGTYQCQCKRGFSGDGFNCE 252
+ D+ CT E +N C N G Y CQC GF+ D
Sbjct: 124 XVPNPEDEXX----CTXTGETACQLXCNTDNEVCXNVEGVYXCQCMEGFTFDXEXNV 176
Score = 52.3 bits (124), Expect = 2e-08
Identities = 17/137 (12%), Positives = 28/137 (20%), Gaps = 7/137 (5%)
Query: 114 DINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDPRA 173
+ D N + C C G E T
Sbjct: 1 EAEASAVTVDTICXNGQLVQMSNHFXCMCNEGLVHLSENTCEEXNECXXETLGXACGEFG 60
Query: 174 CNPPHSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCINRP 233
+ + C C GY DV + N + ++
Sbjct: 61 -QCIENPDPAQVNMYXCGCIEGYTLXEDT------CVLDVCQYXNCGESGECIVEYLSEI 113
Query: 234 GTYQCQCKRGFSGDGFN 250
+ C C G + +
Sbjct: 114 QSAGCSCAIGXVPNPED 130
Score = 45.4 bits (106), Expect = 4e-06
Identities = 26/153 (16%), Positives = 40/153 (26%), Gaps = 18/153 (11%)
Query: 67 NDDPCKNFFCVANSSCIVEDDKPTCICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLCH 126
C F + + + C C G+ L +D D+ + +
Sbjct: 52 LGXACGEFGQCIENPDPAQVNMYXCGCIEGYT-------LXEDTCVLDVCQYXNCGESGE 104
Query: 127 KNAMCFNEIGSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDPRACNPPHSTCTNLTD 186
+EI S C C G N T CN + C N+
Sbjct: 105 CIVEYLSEIQSAGCSCAIGXVPNPEDEXXCTXTGETACQL------XCNTDNEVCXNVEG 158
Query: 187 YRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNY 219
C C G+ D VC ++
Sbjct: 159 VYXCQCMEGFTFD-----XEXNVCLGPHHHHHH 186
>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein,
repeat, signal, multigene family, disease mutation,
matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 1emo_A
Length = 82
Score = 58.0 bits (141), Expect = 2e-11
Identities = 21/88 (23%), Positives = 34/88 (38%), Gaps = 13/88 (14%)
Query: 112 CFDINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDP 171
D++EC K+ C N GSY C+C G+ G++C + C
Sbjct: 2 AVDMDECKEPD--VCKHGQCINTDGSYRCECPFGYILAGNECVDT--------DECSVGN 51
Query: 172 RACNPPHSTCTNLTDYRTCNCDPGYQKD 199
+ TC N+ C C+ G++
Sbjct: 52 PCG---NGTCKNVIGGFECTCEEGFEPG 76
Score = 54.1 bits (131), Expect = 5e-10
Identities = 23/77 (29%), Positives = 26/77 (33%), Gaps = 10/77 (12%)
Query: 177 PHSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCINRPGTY 236
H C N C C GY C D DEC P N C N G +
Sbjct: 15 KHGQCINTDGSYRCECPFGYILA-------GNECVDTDECSVGNPCGN--GTCKNVIGGF 65
Query: 237 QCQCKRGFSG-DGFNCE 252
+C C+ GF CE
Sbjct: 66 ECTCEEGFEPGPMMTCE 82
Score = 50.7 bits (122), Expect = 8e-09
Identities = 16/61 (26%), Positives = 21/61 (34%), Gaps = 10/61 (16%)
Query: 90 TCICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGN 149
C C G+ C D +EC+ G + C N IG + C C GF
Sbjct: 27 RCECPFGYIL--------AGNECVDTDECSVGNPCGN--GTCKNVIGGFECTCEEGFEPG 76
Query: 150 G 150
Sbjct: 77 P 77
Score = 50.3 bits (121), Expect = 1e-08
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 210 CTDVDECMNYPPICNNNADCINRPGTYQCQCKRGFSGDGFNCE 252
D+DEC + CIN G+Y+C+C G+ G C
Sbjct: 2 AVDMDECKEPDVCKH--GQCINTDGSYRCECPFGYILAGNECV 42
>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain,
blood coagulation, polymorphism, glycoprotein,
hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB:
1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A*
1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B*
2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...
Length = 134
Score = 55.0 bits (133), Expect = 9e-10
Identities = 18/131 (13%), Positives = 36/131 (27%), Gaps = 23/131 (17%)
Query: 125 CHKNAMCFNEIGSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDPRACNPPHSTCTNL 184
C + + E ++ + CE+ P N C +
Sbjct: 12 CMEETCSYEEAREVFEDSDKTNEF-WNKYKDG--------DQCETSP-CQN--QGKCKDG 59
Query: 185 TDYRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCINRPGTYQCQCKRGF 244
TC C G++ + + + + + C + C C RG+
Sbjct: 60 LGEYTCTCLEGFEGKNCE--------LFTRKLCSLDN-GDCDQFCHEEQNSVVCSCARGY 110
Query: 245 SG--DGFNCEE 253
+ +G C
Sbjct: 111 TLADNGKACIP 121
Score = 53.4 bits (129), Expect = 3e-09
Identities = 26/154 (16%), Positives = 41/154 (26%), Gaps = 32/154 (20%)
Query: 76 CVANSSCIVEDDKPTCICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLCHKNAMCFNEI 135
C+ + E + ++ + D ++C T C C + +
Sbjct: 12 CMEETCSYEEAREVFEDSDKTNEFWNKYK---------DGDQCE--TSPCQNQGKCKDGL 60
Query: 136 GSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDPRACNPPHSTCTNLTDYRTCNCDPG 195
G Y+C C GF G C + C D C+ C + C+C G
Sbjct: 61 GEYTCTCLEGFE--GKNC------ELFTRKLCSLDNGDCD---QFCHEEQNSVVCSCARG 109
Query: 196 YQKDYLDDRRVAFVCTDVDECMNYPPICNNNADC 229
Y YP C
Sbjct: 110 YTLADNG--------KACIPTGPYP--CGKQTLE 133
>1aut_L Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 3f6u_L*
Length = 114
Score = 51.3 bits (123), Expect = 1e-08
Identities = 29/121 (23%), Positives = 44/121 (36%), Gaps = 20/121 (16%)
Query: 112 CFDINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDP 171
C + + LC + C + IGS+SC CR G+ G Q E++ C D
Sbjct: 9 CLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQ-REVSFLN------CSLDN 61
Query: 172 RACNPPHSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCIN 231
C C +R C+C PGY+ DD + +P C +
Sbjct: 62 GGC---THYCLEEVGWRRCSCAPGYKLG--DDLL------QCHPAVKFP--CGRPWKRME 108
Query: 232 R 232
+
Sbjct: 109 K 109
Score = 43.9 bits (104), Expect = 4e-06
Identities = 14/78 (17%), Positives = 23/78 (29%), Gaps = 10/78 (12%)
Query: 178 HSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCINRPGTYQ 237
H TC + +C+C G++ + C C+ G +
Sbjct: 25 HGTCIDGIGSFSCDCRSGWEGRFCQ------REVSFLNCSLDN--GGCTHYCLEEVGWRR 76
Query: 238 CQCKRGFSG--DGFNCEE 253
C C G+ D C
Sbjct: 77 CSCAPGYKLGDDLLQCHP 94
Score = 42.0 bits (99), Expect = 2e-05
Identities = 17/95 (17%), Positives = 32/95 (33%), Gaps = 11/95 (11%)
Query: 64 STVNDDPCKNFFCVANSSCIVEDDKPTCICNRGFQQLYSEDRLQDDFGCFDINECNAGTD 123
+ + C + +CI +C C G++ + + +++ N D
Sbjct: 10 LVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQ---------REVSFLNCSLD 60
Query: 124 LCHKNAMCFNEIGSYSCQCRPGFTG--NGHQCTEI 156
C E+G C C PG+ + QC
Sbjct: 61 NGGCTHYCLEEVGWRRCSCAPGYKLGDDLLQCHPA 95
Score = 36.6 bits (85), Expect = 0.001
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 8/50 (16%)
Query: 209 VCTDVDECMNYPPI------CNNNADCINRPGTYQCQCKRGFSGDGFNCE 252
D D+C+ P C + CI+ G++ C C+ G+ G C+
Sbjct: 2 KHVDGDQCLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGR--FCQ 49
>1x7a_L Coagulation factor IX, light chain; inhibition, blood
clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP:
g.3.11.1 g.3.11.1 PDB: 1pfx_L*
Length = 146
Score = 50.4 bits (121), Expect = 4e-08
Identities = 22/125 (17%), Positives = 34/125 (27%), Gaps = 32/125 (25%)
Query: 112 CFDINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDP 171
D ++C C +C ++I SY C C+ GF G CE D
Sbjct: 45 YVDGDQCEPNP--CLNGGLCKDDINSYECWCQVGFEG----------------KNCELDA 86
Query: 172 RACNPP----HSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNA 227
T C+C GY+ + +P C +
Sbjct: 87 TCNIKNGRCKQFCKTGADSKVLCSCTTGYRLAPDQ--------KSCKPAVPFP--CGRVS 136
Query: 228 DCINR 232
+
Sbjct: 137 VSHSP 141
Score = 48.9 bits (117), Expect = 2e-07
Identities = 19/129 (14%), Positives = 31/129 (24%), Gaps = 26/129 (20%)
Query: 131 CFNEIGSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDPRACNPP----HSTCTNLTD 186
C E S+ + E T +T D C P C + +
Sbjct: 18 CIEEKCSFEEAR---------EVFENT-EKTNEFWKQYVDGDQCEPNPCLNGGLCKDDIN 67
Query: 187 YRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCINRPGTYQCQCKRGFSG 246
C C G++ + D + C C G+
Sbjct: 68 SYECWCQVGFEGKNCE--------LDATCNIKNG--RCKQFCKTGADSKVLCSCTTGYRL 117
Query: 247 --DGFNCEE 253
D +C+
Sbjct: 118 APDQKSCKP 126
Score = 38.9 bits (91), Expect = 4e-04
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
Query: 209 VCTDVDECMNYPPICNNNADCINRPGTYQCQCKRGFSGDGFNCEEGKYC 257
D D+C P C N C + +Y+C C+ GF G NCE C
Sbjct: 44 QYVDGDQCEPNP--CLNGGLCKDDINSYECWCQVGFEGK--NCELDATC 88
Score = 37.7 bits (88), Expect = 0.001
Identities = 15/84 (17%), Positives = 23/84 (27%), Gaps = 11/84 (13%)
Query: 66 VNDDPCKNFFCVANSSCIVEDDKPTCICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLC 125
V+ D C+ C+ C + + C C GF+ E D +
Sbjct: 46 VDGDQCEPNPCLNGGLCKDDINSYECWCQVGFEGKNCEL---------DATCNI--KNGR 94
Query: 126 HKNAMCFNEIGSYSCQCRPGFTGN 149
K C C G+
Sbjct: 95 CKQFCKTGADSKVLCSCTTGYRLA 118
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G,
beta-propeller, protein binding; 3.30A {Rattus
norvegicus}
Length = 386
Score = 50.9 bits (121), Expect = 2e-07
Identities = 25/146 (17%), Positives = 37/146 (25%), Gaps = 18/146 (12%)
Query: 114 DINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFT--GNGHQCTEITVPQTGPTSPCESDP 171
CN C C G+ C C G+ +G C ++ C ++
Sbjct: 2 GEENCNVNNGGCA--QKCQMIRGAVQCTCHTGYRLTEDGRTCQDVN--------EC-AEE 50
Query: 172 RACNPPHSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCIN 231
C+ CTN C C+ GY+ DRR + I
Sbjct: 51 GYCSQ---GCTNSEGAFQCWCEAGYELR--PDRRSCKALGPEPVLLFANRIDIRQVLPHR 105
Query: 232 RPGTYQCQCKRGFSGDGFNCEEGKYC 257
T F+
Sbjct: 106 SEYTLLLNNLENAIALDFHHRRELVF 131
Score = 42.5 bits (99), Expect = 9e-05
Identities = 24/140 (17%), Positives = 42/140 (30%), Gaps = 14/140 (10%)
Query: 69 DPCKNFFCVANSSCIVEDDKPTCICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLCHKN 128
+ C C + C C+ G++ +D C D+NEC A C +
Sbjct: 4 ENCNVNNGGCAQKCQMIRGAVQCTCHTGYRL------TEDGRTCQDVNEC-AEEGYCSQ- 55
Query: 129 AMCFNEIGSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDPRACNPPH-----STCTN 183
C N G++ C C G+ + + + PH N
Sbjct: 56 -GCTNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNN 114
Query: 184 LTDYRTCNCDPGYQKDYLDD 203
L + + + + D
Sbjct: 115 LENAIALDFHHRRELVFWSD 134
Score = 29.4 bits (65), Expect = 1.3
Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 130 MCFNEIGSYSCQCRPGFT-GNGHQCTE 155
+C +Y+C C GF N H C +
Sbjct: 360 LCLPSGQNYTCACPTGFRKINSHACAQ 386
Score = 27.8 bits (61), Expect = 4.4
Identities = 7/26 (26%), Positives = 10/26 (38%), Gaps = 1/26 (3%)
Query: 229 CINRPGTYQCQCKRGFS-GDGFNCEE 253
C+ Y C C GF + C +
Sbjct: 361 CLPSGQNYTCACPTGFRKINSHACAQ 386
>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR
{Homo sapiens}
Length = 87
Score = 46.1 bits (110), Expect = 5e-07
Identities = 31/143 (21%), Positives = 46/143 (32%), Gaps = 64/143 (44%)
Query: 114 DINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDPRA 173
D++EC+ +C A+C N G + C+C G+ N
Sbjct: 2 DVDECSLKPSICG-TAVCKNIPGDFECECPEGYRYNL----------------------- 37
Query: 174 CNPPHSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCINRP 233
++C D+DEC C C+N P
Sbjct: 38 ------------KSKSC--------------------EDIDECSENM--CAQL--CVNYP 61
Query: 234 GTYQCQC--KRGF--SGDGFNCE 252
G Y C C K+GF + D +CE
Sbjct: 62 GGYTCYCDGKKGFKLAQDQKSCE 84
Score = 41.9 bits (99), Expect = 1e-05
Identities = 18/71 (25%), Positives = 27/71 (38%), Gaps = 14/71 (19%)
Query: 90 TCICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLCHKNAMCFNEIGSYSCQC--RPGFT 147
C C G++ C DI+EC+ C +C N G Y+C C + GF
Sbjct: 26 ECECPEGYRYN------LKSKSCEDIDECSENM--CA--QLCVNYPGGYTCYCDGKKGFK 75
Query: 148 --GNGHQCTEI 156
+ C +
Sbjct: 76 LAQDQKSCEVV 86
>2c4f_L Coagulation factor VII precursor; blood coagulation, serine
protease, EGF, EGF-like domain, GLA, receptor enzyme,
glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG
GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L*
2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L*
1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L*
2flb_L* ...
Length = 142
Score = 45.4 bits (108), Expect = 2e-06
Identities = 22/119 (18%), Positives = 33/119 (27%), Gaps = 22/119 (18%)
Query: 112 CFDINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDP 171
D ++C + C C +++ SY C C P F G + T
Sbjct: 44 YSDGDQCA--SSPCQNGGSCKDQLQSYICFCLPAFEGR-NCETHK--------DDQLICV 92
Query: 172 RACNPPHSTCTNLTD-YRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADC 229
C++ T R+C C GY + YP C
Sbjct: 93 NENGGCEQYCSDHTGTKRSCRCHEGYSLLADG--------VSCTPTVEYP--CGKIPIL 141
Score = 41.9 bits (99), Expect = 3e-05
Identities = 24/130 (18%), Positives = 37/130 (28%), Gaps = 29/130 (22%)
Query: 131 CFNEIGSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDPRACNPPHSTCTNLTDYRTC 190
C E + ++ C S P N +C + C
Sbjct: 22 CSFEEAREIFKDAERTKLFWISYSDG--------DQCASSP-CQN--GGSCKDQLQSYIC 70
Query: 191 NCDPGYQKDYLDDRRVAFVC-TDVDECMNYPPICNN---NADCINRPGT-YQCQCKRGFS 245
C P ++ C T D+ + N C + GT C+C G+S
Sbjct: 71 FCLPAFEGRN---------CETHKDDQLICV--NENGGCEQYCSDHTGTKRSCRCHEGYS 119
Query: 246 G--DGFNCEE 253
DG +C
Sbjct: 120 LLADGVSCTP 129
Score = 32.3 bits (74), Expect = 0.063
Identities = 15/86 (17%), Positives = 27/86 (31%), Gaps = 11/86 (12%)
Query: 66 VNDDPCKNFFCVANSSCIVEDDKPTCICNRGFQQLYSEDRLQDDFGCFDINECNAGTDL- 124
+ D C + C SC + C C F+ E ++ +
Sbjct: 45 SDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCE---------THKDDQLICVNEN 95
Query: 125 CHKNAMCFNEIGS-YSCQCRPGFTGN 149
C + G+ SC+C G++
Sbjct: 96 GGCEQYCSDHTGTKRSCRCHEGYSLL 121
>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular,
developmental protein, notch signaling pathway, EGF,
DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB:
2kb9_A
Length = 169
Score = 45.0 bits (107), Expect = 4e-06
Identities = 34/140 (24%), Positives = 47/140 (33%), Gaps = 36/140 (25%)
Query: 114 DINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDPRA 173
+ C G H + C+C+ G+ G C + C P
Sbjct: 64 NRAICRQGCSPKHGSCKL-----PGDCRCQYGWQGL--YCDK-----------CIPHPG- 104
Query: 174 CNPPHSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCINR- 232
C H C + C C+ + D D++ C + P C N C N
Sbjct: 105 CV--HGICNE--PW-QCLCETNWGGQLCD--------KDLNYCGTHQP-CLNGGTCSNTG 150
Query: 233 PGTYQCQCKRGFSGDGFNCE 252
P YQC C G+SG NCE
Sbjct: 151 PDKYQCSCPEGYSGP--NCE 168
Score = 35.0 bits (81), Expect = 0.012
Identities = 27/148 (18%), Positives = 45/148 (30%), Gaps = 44/148 (29%)
Query: 125 CHKNAMCFNEIGSYSCQCRPGFTG-------------NGHQCTEITVPQ------TGPTS 165
H + G + C + G GH + + GP
Sbjct: 7 HHHHGSI---EGRSAVTCDDYYYGFGCNKFCRPRDDFFGHYACDQNGNKTCMEGWMGPEC 63
Query: 166 PCESDPRACNPPHSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNN 225
+ C+P H +C C C G+Q Y C D+C+ +P
Sbjct: 64 NRAICRQGCSPKHGSC---KLPGDCRCQYGWQGLY---------C---DKCIPHP--GCV 106
Query: 226 NADCINRPGTYQCQCKRGFSGDGFNCEE 253
+ C +QC C+ + G C++
Sbjct: 107 HGICNE---PWQCLCETNWGGQ--LCDK 129
Score = 32.7 bits (75), Expect = 0.062
Identities = 16/81 (19%), Positives = 24/81 (29%), Gaps = 14/81 (17%)
Query: 69 DPCKNFFCVANSSCIVEDDKPTCICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLCHKN 128
D C + C + C+C + + D+N C C
Sbjct: 97 DKCIPHPGCVHGICN---EPWQCLCETNWGGQLCD---------KDLNYCGTHQP-CLNG 143
Query: 129 AMCFNE-IGSYSCQCRPGFTG 148
C N Y C C G++G
Sbjct: 144 GTCSNTGPDKYQCSCPEGYSG 164
>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like
domain, structure and function, coagulation factor;
1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A
Length = 39
Score = 40.2 bits (95), Expect = 2e-05
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Query: 212 DVDECMNYPPICNNNADCINRPGTYQCQCKRGFSGDGFNCE 252
D D+C + P C N C + +Y+C C GF G NCE
Sbjct: 2 DGDQCESNP--CLNGGSCKDDINSYECWCPFGFEGK--NCE 38
Score = 37.8 bits (89), Expect = 1e-04
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 114 DINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGN 149
D ++C ++ C C ++I SY C C GF G
Sbjct: 2 DGDQCE--SNPCLNGGSCKDDINSYECWCPFGFEGK 35
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 43.9 bits (104), Expect = 3e-05
Identities = 20/85 (23%), Positives = 30/85 (35%), Gaps = 13/85 (15%)
Query: 113 FDINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDPR 172
+ C + C N C + I Y+C C PG+ G C + E P
Sbjct: 3 KGGSPCI--SQPCLHNGSCQDSIWGYTCTCSPGYE--GSNCE---------LAKNECHPE 49
Query: 173 ACNPPHSTCTNLTDYRTCNCDPGYQ 197
+ C + TC+C GY+
Sbjct: 50 RTDGCQHFCLPGQESYTCSCAQGYR 74
Score = 40.9 bits (96), Expect = 2e-04
Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Query: 211 TDVDECMNYPPICNNNADCINRPGTYQCQCKRGFSGDGFNCEEGKY 256
C++ P C +N C + Y C C G+ +G NCE K
Sbjct: 3 KGGSPCISQP--CLHNGSCQDSIWGYTCTCSPGY--EGSNCELAKN 44
Score = 36.6 bits (85), Expect = 0.006
Identities = 20/81 (24%), Positives = 30/81 (37%), Gaps = 14/81 (17%)
Query: 166 PCESDPRACNPPHSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFVC-TDVDECMNYPPICN 224
PC S P C + +C + TC C PGY+ C +EC
Sbjct: 7 PCISQP--CLH-NGSCQDSIWGYTCTCSPGYEGSN---------CELAKNECHPERTDGC 54
Query: 225 NNADCINRPGTYQCQCKRGFS 245
+ C+ +Y C C +G+
Sbjct: 55 QH-FCLPGQESYTCSCAQGYR 74
Score = 35.1 bits (81), Expect = 0.020
Identities = 23/100 (23%), Positives = 34/100 (34%), Gaps = 12/100 (12%)
Query: 66 VNDDPCKNFFCVANSSCIVEDDKPTCICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLC 125
PC + C+ N SC TC C+ G++ E NEC+
Sbjct: 3 KGGSPCISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCE---------LAKNECHPERTDG 53
Query: 126 HKNAMCFNEIGSYSCQCRPGFT--GNGHQCTEITVPQTGP 163
++ C SY+C C G+ + QC G
Sbjct: 54 CQHF-CLPGQESYTCSCAQGYRLGEDHKQCVPHDQCACGV 92
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET:
NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Length = 423
Score = 43.9 bits (103), Expect = 3e-05
Identities = 39/166 (23%), Positives = 49/166 (29%), Gaps = 21/166 (12%)
Query: 76 CVANSSCIVEDDKPTCICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLCHKNAMCFNEI 135
C+ N C +D CIC GF E + E +G + C C
Sbjct: 205 CMNNGVCH--EDTGECICPPGFMGRTCEKACELHTFGRTCKERCSGQEGCKSYVFC--LP 260
Query: 136 GSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDPRACNPPHSTCTNLTDYRTCNCDPG 195
Y C C G+ G QC E P G P +CN C C C PG
Sbjct: 261 DPYGCSCATGWKG--LQCNEACHP--GFYGPDCKLRCSCNN-GEMCDRFQ---GCLCSPG 312
Query: 196 YQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCINRPGTYQCQCK 241
+Q C P I + G + CK
Sbjct: 313 WQGLQ---------CEREGIPRMTPKIVDLPDHIEVNSGKFNPICK 349
Score = 32.4 bits (73), Expect = 0.17
Identities = 17/97 (17%), Positives = 28/97 (28%), Gaps = 7/97 (7%)
Query: 157 TVPQTGPTSPCESDPRACNPPHSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCTDVDEC 216
+VP+ E P + + + + + + C
Sbjct: 142 SVPRHEVPDILEVHLPHAQPQDAGVYSARYIGGNLFTSAFTRLIVRRCEAQKWGPE---C 198
Query: 217 MNYPPICNNNADCINRPGTYQCQCKRGFSGDGFNCEE 253
+ C NN C T +C C GF G CE+
Sbjct: 199 NHLCTACMNNGVCH--EDTGECICPPGFMGR--TCEK 231
Score = 29.3 bits (65), Expect = 1.5
Identities = 25/153 (16%), Positives = 38/153 (24%), Gaps = 34/153 (22%)
Query: 111 GCFDINECNAGTDLCHKNAMCFN--------EIGSYSCQCRPGFTGNGHQCTEITVPQTG 162
+++ +A + + +C G
Sbjct: 150 DILEVHLPHAQPQDAGVYSARYIGGNLFTSAFTRLIVRRCEAQKWGPE------------ 197
Query: 163 PTSPCESDPRACNPPHSTCTNLTDYRTCNCDPGYQKDY--LDDRRVAFVCTDVDECMNYP 220
C AC + C T C C PG+ F T + C
Sbjct: 198 ----CNHLCTACM-NNGVCHEDTG--ECICPPGFMGRTCEKACELHTFGRTCKERCSGQE 250
Query: 221 PICNNNADCINRPGTYQCQCKRGFSGDGFNCEE 253
C + C+ P Y C C G+ G C E
Sbjct: 251 G-CKSYVFCL--PDPYGCSCATGWKGL--QCNE 278
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell
adhesion, DI mutation, glycoprotein, HOST-virus
interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo
sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Length = 690
Score = 43.9 bits (103), Expect = 4e-05
Identities = 31/194 (15%), Positives = 50/194 (25%), Gaps = 25/194 (12%)
Query: 69 DPCKNFFCVANSSCIVEDDKPTCICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLCHKN 128
D C E +K I GF+ +C +
Sbjct: 393 DTVSFSIEAKVRGCPQEKEKSFTIKPVGFKDSLIVQ-------VTFDCDCACQAQAEPNS 445
Query: 129 AMCFNEIGSYS---CQCRPGFTGNGHQCTEITVPQTGPTSPCESDPRACNPPHSTCTNLT 185
C N G++ C+C PG+ G+ +C P + D + C+
Sbjct: 446 HRCNNGNGTFECGVCRCGPGWLGSQCEC------SEEDYRPSQQDECSPREGQPVCSQRG 499
Query: 186 DYRT--CNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCINRPGTYQCQCKRG 243
+ C C C D +C+ + C C C
Sbjct: 500 ECLCGQCVCHSSDFGKITGKYC---ECDDFSCVRYKGEMCSGHGQCSC----GDCLCDSD 552
Query: 244 FSGDGFNCEEGKYC 257
++G NC
Sbjct: 553 WTGYYCNCTTRTDT 566
Score = 36.2 bits (83), Expect = 0.010
Identities = 29/159 (18%), Positives = 39/159 (24%), Gaps = 40/159 (25%)
Query: 90 TCICNRGFQQLYSEDRLQ-DDFGCFDINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTG 148
C+C+ + + DDF C +C + C C C +TG
Sbjct: 505 QCVCHSSDFGKITGKYCECDDFSCVRYKGE-----MCSGHGQCSC----GDCLCDSDWTG 555
Query: 149 NGHQCTEITVPQTGPTSPCESDPRACNPPHSTCTNLTDYRTCNCDPGYQKDYLDDRRVAF 208
CT T C S C PG D
Sbjct: 556 YYCNCTT-------RTDTCMSSNGLLCSGRGKC---ECGSCVCIQPGSYGDT-------- 597
Query: 209 VCTDVDECMNYPPICNNNADCINRPGTYQCQCKRGFSGD 247
C C P C +C +CK+ G
Sbjct: 598 -CEKCPTC---PDACTFKKEC--------VECKKFDRGA 624
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase,
hydrolase-lipid binding P complex; 3.30A {Homo sapiens}
PDB: 3p5c_L
Length = 400
Score = 42.9 bits (100), Expect = 7e-05
Identities = 26/145 (17%), Positives = 36/145 (24%), Gaps = 18/145 (12%)
Query: 116 NECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDPRACN 175
NEC C +C + Y C C GF + E C+ DP C
Sbjct: 1 NECLDNNGGCS--HVCNDLKIGYECLCPDGFQLVAQRRCE-------DIDECQ-DPDTC- 49
Query: 176 PPHSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCINRPGT 235
C NL C C+ G+Q D C V + + +
Sbjct: 50 --SQLCVNLEGGYKCQCEEGFQLDPHT-----KACKAVGSIAYLFFTNRHEVRKMTLDRS 102
Query: 236 YQCQCKRGFSGDGFNCEEGKYCLVV 260
E +
Sbjct: 103 EYTSLIPNLRNVVALDTEVASNRIY 127
Score = 42.1 bits (98), Expect = 1e-04
Identities = 30/140 (21%), Positives = 43/140 (30%), Gaps = 15/140 (10%)
Query: 69 DPCKNFFCVANSSCIVEDDKPTCICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLCHKN 128
+ C + + C C+C GF +L C DI+EC D C
Sbjct: 1 NECLDNNGGCSHVCNDLKIGYECLCPDGF-------QLVAQRRCEDIDEC-QDPDTCS-- 50
Query: 129 AMCFNEIGSYSCQCRPGFTGNGHQCT-----EITVPQTGPTSPCESDPRACNPPHSTCTN 183
+C N G Y CQC GF + H I + S N
Sbjct: 51 QLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPN 110
Query: 184 LTDYRTCNCDPGYQKDYLDD 203
L + + + + Y D
Sbjct: 111 LRNVVALDTEVASNRIYWSD 130
Score = 31.7 bits (71), Expect = 0.27
Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 3/50 (6%)
Query: 214 DECMNYPPICNNNADCINRPGTYQCQCKRGFS-GDGFNCEEGKYCLVVGI 262
+EC++ C+ C + Y+C C GF CE+ C
Sbjct: 1 NECLDNNGGCS--HVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDT 48
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion,
pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
sapiens} PDB: 3k71_B* 3k72_B*
Length = 687
Score = 42.4 bits (99), Expect = 1e-04
Identities = 32/164 (19%), Positives = 43/164 (26%), Gaps = 34/164 (20%)
Query: 90 TCICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGN 149
C+C+ + + N +CF C+C PGF G+
Sbjct: 494 QCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFC----GKCRCHPGFEGS 549
Query: 150 GHQCTEITVPQTGPTSPCESDPRACNPPHSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFV 209
QC T C + R C C C GYQ
Sbjct: 550 ACQCER-------TTEGCLNPRRVECSGRGRCRC----NVCECHSGYQLPL--------- 589
Query: 210 CTDVDECMNYPPICNNNADCINRPGTYQCQCKRGFSGDGFNCEE 253
C EC P C C + ++G G NC
Sbjct: 590 C---QECPGCPSPCGKYISCAEC-----LKFEKGPFGK--NCSA 623
Score = 38.2 bits (88), Expect = 0.003
Identities = 24/154 (15%), Positives = 41/154 (26%), Gaps = 9/154 (5%)
Query: 107 QDDFGCFDINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGNGHQCTEITVPQTGPTSP 166
+ + + + ++ + C F T+I Q P
Sbjct: 365 SNGVTHRNQPRGDCDGVQINVPITFQVKVTATECIQEQSFVIRALGFTDIVTVQVLPQCE 424
Query: 167 CESDPRACNPPHSTCTNLTDYRTCNCDPGYQKDYLD---DRRVAFVCTDVDECMNYPPIC 223
C ++ + + C CD GY + R + N IC
Sbjct: 425 CRCRDQSRDRSLCHGKGFLECGICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIIC 484
Query: 224 NNNADCINRPGTYQCQCKRGFSGDGFNCEEGKYC 257
+ DC+ QC C G+YC
Sbjct: 485 SGLGDCVCG----QCLCHTSDVPG--KLIYGQYC 512
Score = 37.8 bits (87), Expect = 0.004
Identities = 28/194 (14%), Positives = 43/194 (22%), Gaps = 26/194 (13%)
Query: 71 CKNFFCVANSSCIVEDDKPTCICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLCHKNAM 130
F V ++ ++ I GF D + +C ++
Sbjct: 385 VPITFQVKVTATECIQEQSFVIRALGFT---------DIVTVQVLPQCECRCRDQSRDRS 435
Query: 131 CFNEIGSYS---CQCRPGFTGNGHQCTEITVPQTGPTSPCESDPRACNPPHSTCTNLTDY 187
+ G C+C G+ G +C C +
Sbjct: 436 LCHGKGFLECGICRCDTGYIGKNCECQTQGRSSQELEGSC-RKDNNSIICSGLGDCVCG- 493
Query: 188 RTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCIN----RPGTYQCQCKRG 243
C C C EC N C +C+C G
Sbjct: 494 -QCLCHTSDVPG---KLIYGQYC----ECDTINCERYNGQVCGGPGRGLCFCGKCRCHPG 545
Query: 244 FSGDGFNCEEGKYC 257
F G CE
Sbjct: 546 FEGSACQCERTTEG 559
Score = 35.5 bits (81), Expect = 0.018
Identities = 23/185 (12%), Positives = 42/185 (22%), Gaps = 43/185 (23%)
Query: 69 DPCKNFFCVANSSCIVEDDKPTCICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLCHKN 128
+ C + C C+ GF+ + + GC + C
Sbjct: 520 ERYNGQVCGGPGRGLCFCG--KCRCHPGFEGSACQCE-RTTEGCLNPRRVE-----CSGR 571
Query: 129 AMCFNEIGSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDPRACNPPHSTCTNLTDYR 188
C C+C G+ C E C P C + +C
Sbjct: 572 GRC----RCNVCECHSGYQLP--LCQE-----------CPGCPSPCGK-YISCAE----- 608
Query: 189 TCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCINRPGTYQCQCKRGFSGDG 248
+ G C+ + C R C ++ +
Sbjct: 609 CLKFEKGPFGKN---------CSAACPGLQLSNNPVKGRTCKER---DSEGCWVAYTLEQ 656
Query: 249 FNCEE 253
+ +
Sbjct: 657 QDGMD 661
Score = 33.1 bits (75), Expect = 0.10
Identities = 16/130 (12%), Positives = 29/130 (22%), Gaps = 12/130 (9%)
Query: 137 SYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDPRACNPPHSTCTNLTDYRTCNCDPGY 196
+Y C G T + Q + A + G+
Sbjct: 359 TYDSFCSNGVTHRNQPRGDCDGVQINVPITFQVKVTATECIQ-------EQSFVIRALGF 411
Query: 197 QKDYLDDRRVAFVCTDVDECMNYPPICNNNADCINRPGTYQCQCKRGFSGDGFNCEEGKY 256
C D+ + +C+ C+C G+ G C+
Sbjct: 412 TDIVTVQVLPQCECRCRDQSRD-RSLCHGKGFLEC----GICRCDTGYIGKNCECQTQGR 466
Query: 257 CLVVGITLCK 266
C+
Sbjct: 467 SSQELEGSCR 476
>1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR
{Homo sapiens} SCOP: g.3.11.1
Length = 53
Score = 37.1 bits (86), Expect = 4e-04
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 8/49 (16%)
Query: 114 DINECNAGTDLCHKNA------MCFNEIGSYSCQCRPGFT--GNGHQCT 154
D++EC + + ++ +C N +G Y C CRPG+ + H C
Sbjct: 3 DLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDRHSCQ 51
Score = 33.6 bits (77), Expect = 0.006
Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 8/49 (16%)
Query: 212 DVDECMNYPPICNNNAD------CINRPGTYQCQCKRGF--SGDGFNCE 252
D+DEC + + C N G Y C C+ G+ D +C+
Sbjct: 3 DLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDRHSCQ 51
>1ob1_C Major merozoite surface protein; immune system,
immunoglobulin/complex, immunoglobulin, antib fragment,
MSP1-19, EGF-like domain; 2.90A {Plasmodium falciparum}
SCOP: g.3.11.4 g.3.11.4 PDB: 1cej_A 2flg_A
Length = 99
Score = 37.4 bits (86), Expect = 6e-04
Identities = 19/95 (20%), Positives = 31/95 (32%), Gaps = 13/95 (13%)
Query: 114 DINECNAGTDLCHKNAMCF-NEIGSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDPR 172
+I++ C +N+ CF + C+C + G +C E P C +
Sbjct: 1 NISQHQCVKKQCPQNSGCFRHLDEREECKCLLNYKQEGDKCVENPNP------TCNENNG 54
Query: 173 ACNPPHSTCTNLTDYR-----TCNCDPGYQKDYLD 202
C+ + CT TC C D
Sbjct: 55 GCD-ADAKCTEEDSGSNGKKITCECTKPDSYPLFD 88
Score = 31.7 bits (71), Expect = 0.063
Identities = 19/89 (21%), Positives = 29/89 (32%), Gaps = 18/89 (20%)
Query: 176 PPHSTCTNLTDYR-TCNCDPGYQKDYLDDRRVAFVCTDVDE--CMNYPPICNNNADCI-- 230
P +S C D R C C Y+++ C + C C+ +A C
Sbjct: 13 PQNSGCFRHLDEREECKCLLNYKQE-------GDKCVENPNPTCNENNGGCDADAKCTEE 65
Query: 231 ---NRPGTYQCQCKRGFS---GDGFNCEE 253
+ C+C + S DG C
Sbjct: 66 DSGSNGKKITCECTKPDSYPLFDGIFCSH 94
Score = 31.7 bits (71), Expect = 0.068
Identities = 19/101 (18%), Positives = 34/101 (33%), Gaps = 19/101 (18%)
Query: 66 VNDDPCKNFFCVANSSCIV-EDDKPTCICNRGFQQLYSEDRLQDDFGCFDINE--CNAGT 122
++ C C NS C D++ C C ++ Q+ C + CN
Sbjct: 2 ISQHQCVKKQCPQNSGCFRHLDEREECKCLLNYK--------QEGDKCVENPNPTCNENN 53
Query: 123 DLCHKNAMC-----FNEIGSYSCQCRPGFT---GNGHQCTE 155
C +A C + +C+C + +G C+
Sbjct: 54 GGCDADAKCTEEDSGSNGKKITCECTKPDSYPLFDGIFCSH 94
Score = 28.6 bits (63), Expect = 0.95
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 223 CNNNADC-INRPGTYQCQCKRGFSGDGFNCEE 253
C N+ C + +C+C + +G C E
Sbjct: 12 CPQNSGCFRHLDEREECKCLLNYKQEGDKCVE 43
>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}
Length = 324
Score = 39.8 bits (93), Expect = 6e-04
Identities = 25/147 (17%), Positives = 42/147 (28%), Gaps = 38/147 (25%)
Query: 107 QDDFGCFDINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGNGHQCTEITVPQTGPTSP 166
Q F C + A ++ + +E + + C + P
Sbjct: 104 QVGFPCLGKQDGVAAFEVDV--IVMNSEGNTILKTPQNAIFFK--TCQQAECP-----GG 154
Query: 167 CESDPRACNPPHSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNN 226
C C + R C C G+ + C ++ + P C N
Sbjct: 155 CR--------NGGFC---NERRICECPDGFHGPH---------C---EKALCTPR-CMNG 190
Query: 227 ADCINRPGTYQCQCKRGFSGDGFNCEE 253
C+ C C GF G NC++
Sbjct: 191 GLCVT---PGFCICPPGFYGV--NCDK 212
Score = 37.1 bits (86), Expect = 0.004
Identities = 34/179 (18%), Positives = 41/179 (22%), Gaps = 53/179 (29%)
Query: 75 FCVANSSCIVEDDKPTCICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLCHKNAMCFNE 134
F V E + C EC G C C
Sbjct: 119 FEVDVIVMNSEGNTILKTPQNAIFFKT----------C-QQAECPGG---CRNGGFC--- 161
Query: 135 IGSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDPRACNPPHSTCTNLTDYRTCNCDP 194
C+C GF G C + T C + C C C P
Sbjct: 162 NERRICECPDGFHGP--HCEKAL-----CTPRCMN--------GGLCVT---PGFCICPP 203
Query: 195 GYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCINRPGTYQCQCKRGFSGDGFNCEE 253
G+ C D C C N C +C C G G+ CE
Sbjct: 204 GFYGVN---------C-DKANC---STTCFNGGTCFY---PGKCICPPGLEGE--QCEI 244
Score = 36.0 bits (83), Expect = 0.010
Identities = 30/129 (23%), Positives = 37/129 (28%), Gaps = 39/129 (30%)
Query: 125 CHKNAMCFNEIGSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDPRACNPPHSTCTNL 184
C CF C C PG G QC P PC + C
Sbjct: 219 CFNGGTCFY---PGKCICPPGLEGE--QCEISKCP-----QPCRN--------GGKCIG- 259
Query: 185 TDYRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCINRPGTYQCQCKRGF 244
C C GYQ D V E C + C +CQC+ G+
Sbjct: 260 --KSKCKCSKGYQGDLCS--------KPVCEPG-----CGAHGTCHE---PNKCQCQEGW 301
Query: 245 SGDGFNCEE 253
G +C +
Sbjct: 302 HGR--HCNK 308
Score = 35.2 bits (81), Expect = 0.019
Identities = 29/129 (22%), Positives = 43/129 (33%), Gaps = 39/129 (30%)
Query: 125 CHKNAMCFNEIGSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDPRACNPPHSTCTNL 184
C +C C C PGF G C + + C + TC
Sbjct: 187 CMNGGLCVT---PGFCICPPGFYGV--NCDKANCS-----TTCFN--------GGTCFY- 227
Query: 185 TDYRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCINRPGTYQCQCKRGF 244
C C PG + + C ++ +C P C N CI +C+C +G+
Sbjct: 228 --PGKCICPPGLEGEQ---------C-EISKC---PQPCRNGGKCIG---KSKCKCSKGY 269
Query: 245 SGDGFNCEE 253
GD C +
Sbjct: 270 QGD--LCSK 276
Score = 27.5 bits (61), Expect = 5.1
Identities = 16/102 (15%), Positives = 30/102 (29%), Gaps = 29/102 (28%)
Query: 125 CHKNAMCFNEIGSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDPRACNPPHSTCTNL 184
C C IG C+C G+ G+ C++ C H TC
Sbjct: 251 CRNGGKC---IGKSKCKCSKGYQGD--LCSK------------PVCEPGCG-AHGTC--- 289
Query: 185 TDYRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNN 226
+ C C G+ + + + + +++
Sbjct: 290 HEPNKCQCQEGWHGRHCN--------KRYEASLIGTKHHHHH 323
>1n1i_A Merozoite surface protein-1; MSP1, malaria, surface antigen,
glycoprotein, EGF domain, cell adhesion; HET: HIS; 2.40A
{Plasmodium knowlesi strain H} SCOP: g.3.11.4 g.3.11.4
Length = 105
Score = 37.4 bits (86), Expect = 7e-04
Identities = 17/80 (21%), Positives = 29/80 (36%), Gaps = 10/80 (12%)
Query: 125 CHKNAMCFNEI-GSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDPRACNPPHSTCTN 183
+NA C+ + G+ +C GF G +C ++ CE + C P + CT
Sbjct: 18 VPENAACYRYLDGTEEWRCLLGFKEVGGKCVPASI-------TCEENNGGC-APEAECTM 69
Query: 184 LTDYR-TCNCDPGYQKDYLD 202
C C + +
Sbjct: 70 DDKKEVECKCTKEGSEPLFE 89
Score = 37.0 bits (85), Expect = 0.001
Identities = 15/89 (16%), Positives = 26/89 (29%), Gaps = 13/89 (14%)
Query: 176 PPHSTCTNLTDY-RTCNCDPGYQKDYLDDRRVAFVCTDVD-ECMNYPPICNNNADCI-NR 232
P ++ C D C G+++ C C C A+C +
Sbjct: 19 PENAACYRYLDGTEEWRCLLGFKEV-------GGKCVPASITCEENNGGCAPEAECTMDD 71
Query: 233 PGTYQCQCKRGFS---GDGFNCEEGKYCL 258
+C+C + S +G C
Sbjct: 72 KKEVECKCTKEGSEPLFEGVFCSSSSGPH 100
Score = 34.3 bits (78), Expect = 0.010
Identities = 17/95 (17%), Positives = 28/95 (29%), Gaps = 14/95 (14%)
Query: 71 CKNFFCVANSSCI-VEDDKPTCICNRGFQQLYSEDRLQDDFGCFDIN-ECNAGTDLCHKN 128
C + N++C D C GF+ + C + C C
Sbjct: 13 CIDTNVPENAACYRYLDGTEEWRCLLGFK--------EVGGKCVPASITCEENNGGCAPE 64
Query: 129 AMC-FNEIGSYSCQCR---PGFTGNGHQCTEITVP 159
A C ++ C+C G C+ + P
Sbjct: 65 AECTMDDKKEVECKCTKEGSEPLFEGVFCSSSSGP 99
Score = 30.8 bits (69), Expect = 0.16
Identities = 10/32 (31%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 223 CNNNADCINR-PGTYQCQCKRGFSGDGFNCEE 253
NA C GT + +C GF G C
Sbjct: 18 VPENAACYRYLDGTEEWRCLLGFKEVGGKCVP 49
>1b9w_A Protein (merozoite surface protein 1); MSP-1, candidate malaria
vaccine, surface antigen; 1.80A {Plasmodium cynomolgi}
SCOP: g.3.11.4 g.3.11.4 PDB: 2npr_A
Length = 95
Score = 36.6 bits (84), Expect = 0.001
Identities = 14/80 (17%), Positives = 25/80 (31%), Gaps = 9/80 (11%)
Query: 125 CHKNAMCFNEI-GSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDPRACNPPHSTCTN 183
+NA C+ + G+ +C F + +C P C+ C P + C
Sbjct: 12 VPENAACYRYLDGTEEWRCLLYFKEDAGKCVPA------PNMTCKDKNGGCA-PEAECKM 64
Query: 184 LTD-YRTCNCDPGYQKDYLD 202
C C + +
Sbjct: 65 NDKNEIVCKCTKEGSEPLFE 84
Score = 34.2 bits (78), Expect = 0.007
Identities = 17/86 (19%), Positives = 27/86 (31%), Gaps = 14/86 (16%)
Query: 176 PPHSTCTNLTDY-RTCNCDPGYQKDYLDDRRVAFVCTDVDE--CMNYPPICNNNADCI-N 231
P ++ C D C +++D A C C + C A+C N
Sbjct: 13 PENAACYRYLDGTEEWRCLLYFKED-------AGKCVPAPNMTCKDKNGGCAPEAECKMN 65
Query: 232 RPGTYQCQCKRGFS---GDGFNCEEG 254
C+C + S +G C
Sbjct: 66 DKNEIVCKCTKEGSEPLFEGVFCSHH 91
Score = 33.5 bits (76), Expect = 0.017
Identities = 17/95 (17%), Positives = 26/95 (27%), Gaps = 15/95 (15%)
Query: 68 DDPCKNFFCVANSSCI-VEDDKPTCICNRGFQQLYSEDRLQDDFGCFDINE--CNAGTDL 124
+ C + N++C D C F+ +D C C
Sbjct: 4 EHRCIDTNVPENAACYRYLDGTEEWRCLLYFK--------EDAGKCVPAPNMTCKDKNGG 55
Query: 125 CHKNAMC-FNEIGSYSCQCR---PGFTGNGHQCTE 155
C A C N+ C+C G C+
Sbjct: 56 CAPEAECKMNDKNEIVCKCTKEGSEPLFEGVFCSH 90
Score = 29.2 bits (65), Expect = 0.44
Identities = 9/32 (28%), Positives = 11/32 (34%), Gaps = 1/32 (3%)
Query: 223 CNNNADCINR-PGTYQCQCKRGFSGDGFNCEE 253
NA C GT + +C F D C
Sbjct: 12 VPENAACYRYLDGTEEWRCLLYFKEDAGKCVP 43
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET:
NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Length = 1245
Score = 38.3 bits (88), Expect = 0.003
Identities = 22/126 (17%), Positives = 36/126 (28%), Gaps = 8/126 (6%)
Query: 83 IVEDDKPTCICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLCHKNAMCFNEIGSYSCQC 142
+ + G +L E + E G +C +C C C
Sbjct: 157 VRVQSSLALPVDSGEVKLDDEPPNSGGGSPCEAGEEGEG-GVCLNGGVCSVVDDQAVCDC 215
Query: 143 R-PGFTGNGHQCTEITVPQTGPTSPCESDPRACNPPHSTCTNLT-DYRTCNCD-----PG 195
GF G + T S + NP S+ +T ++T + G
Sbjct: 216 SRTGFRGKDCSQGKEEYIATFKGSEYFCYDLSQNPIQSSSDEITLSFKTLQRNGLMLHTG 275
Query: 196 YQKDYL 201
DY+
Sbjct: 276 KSADYV 281
Score = 32.1 bits (72), Expect = 0.25
Identities = 17/101 (16%), Positives = 25/101 (24%), Gaps = 13/101 (12%)
Query: 166 PCESDPRACNPPHSTCTNLTDYRTCNCD----------PGYQKDYLDDRRVAFVCTDVDE 215
P E A ++ ++ D + LDD E
Sbjct: 129 PPELRAAALKLTLASVREREPFKGWIRDVRVQSSLALPVDSGEVKLDDEPPNSGGGSPCE 188
Query: 216 CMN--YPPICNNNADCINRPGTYQCQCKR-GFSGDGFNCEE 253
+C N C C C R GF G + +
Sbjct: 189 AGEEGEGGVCLNGGVCSVVDDQAVCDCSRTGFRGKDCSQGK 229
Score = 29.0 bits (64), Expect = 2.1
Identities = 12/48 (25%), Positives = 16/48 (33%), Gaps = 3/48 (6%)
Query: 210 CTDVDECMNYPPICNNNADCINRPGTYQCQCKRGFSGDGFNCEEGKYC 257
C++ P C NN C + Y C C G +CE
Sbjct: 616 RETAKPCLSNP--CKNNGMCRDGWNRYVCDCSGTGYL-GRSCEREATV 660
Score = 28.7 bits (63), Expect = 3.2
Identities = 11/70 (15%), Positives = 17/70 (24%)
Query: 111 GCFDINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESD 170
C ++ C N MC + Y C C E TV + +
Sbjct: 613 SCSRETAKPCLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCEREATVLSYDGSMFMKIQ 672
Query: 171 PRACNPPHST 180
+
Sbjct: 673 LPVVMHTEAE 682
Score = 27.5 bits (60), Expect = 6.5
Identities = 9/75 (12%), Positives = 19/75 (25%), Gaps = 2/75 (2%)
Query: 210 CTDVDECMNYPPICNNNADCINRPGTYQCQCKRGFSGDGFNCEEGKYCLVVGITLCKMYL 269
C C+N C+ + + C C + G + Y
Sbjct: 1014 EGPSTTCQEDS--CSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKGGGQITYK 1071
Query: 270 EVVNIQEICGENSIS 284
N + + ++
Sbjct: 1072 WPPNDRPSTRADRLA 1086
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 36.9 bits (84), Expect = 0.003
Identities = 7/26 (26%), Positives = 16/26 (61%), Gaps = 6/26 (23%)
Query: 33 KMQGSIQ----GTAPSIAVGVSPVLE 54
K+Q S++ +AP++A+ + +E
Sbjct: 24 KLQASLKLYADDSAPALAIKAT--ME 47
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo
sapiens}
Length = 426
Score = 37.9 bits (87), Expect = 0.003
Identities = 24/148 (16%), Positives = 39/148 (26%), Gaps = 39/148 (26%)
Query: 110 FGCFDINECNAGTDLCHKNA-MCFNEIGSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCE 168
+ DI G C+ +A +C + +C+C TG C
Sbjct: 286 YAISDIKVR--GRCKCNLHATVCVYDNSKLTCECEHNTTGPD----------------CG 327
Query: 169 SDPRACNPP---HSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNN 225
+ + + C P + C N C N
Sbjct: 328 KCKKNYQGRPWSPGSYLPIPKGAANACIPSIS------------SIGTNVCDNELLHCQN 375
Query: 226 NADCINRPGTYQCQCKRGFSGDGFNCEE 253
C N +C C ++G CE+
Sbjct: 376 GGTCHN---NVRCLCPAAYTGI--LCEK 398
>3fby_A COMP, cartilage oligomeric matrix protein; signature domain, cell
adhesion, disease mutation, dwarfism, EGF-like domain,
glycoprotein, secreted; HET: NAG MAN; 3.15A {Homo
sapiens}
Length = 551
Score = 36.1 bits (83), Expect = 0.012
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 210 CTDVDECMNYPP-ICNNNADCIN-RPGTYQCQCKRGFSGDGFNC 251
+ C + P C+ +ADC+ R G+ C C G++G+G C
Sbjct: 15 NSAQRFCPDGSPSECHEHADCVLERDGSRSCVCAVGWAGNGILC 58
Score = 33.4 bits (76), Expect = 0.077
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 111 GCFDINECNAGT-DLCHKNAMCFNE-IGSYSCQCRPGFTGNGHQC 153
C G+ CH++A C E GS SC C G+ GNG C
Sbjct: 14 WNSAQRFCPDGSPSECHEHADCVLERDGSRSCVCAVGWAGNGILC 58
>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo
sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A
Length = 91
Score = 33.6 bits (77), Expect = 0.013
Identities = 16/65 (24%), Positives = 22/65 (33%), Gaps = 15/65 (23%)
Query: 190 CNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCIN--RPGTYQCQCKRGFSGD 247
C C+ G + + V C C N C + CQC GF+G
Sbjct: 34 CWCNSGRAQCH---------SVPVKSCSEPR--CFNGGTCQQALYFSDFVCQCPEGFAGK 82
Query: 248 GFNCE 252
+CE
Sbjct: 83 --SCE 85
Score = 28.6 bits (64), Expect = 0.64
Identities = 14/60 (23%), Positives = 19/60 (31%), Gaps = 14/60 (23%)
Query: 91 CICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLCHKNAMCFNEI--GSYSCQCRPGFTG 148
C CN G Q + + C+ C C + + CQC GF G
Sbjct: 34 CWCNSGRAQCH----------SVPVKSCS--EPRCFNGGTCQQALYFSDFVCQCPEGFAG 81
Score = 27.1 bits (60), Expect = 2.7
Identities = 11/69 (15%), Positives = 14/69 (20%), Gaps = 15/69 (21%)
Query: 131 CFNEIGSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDPRACNPPHSTCTNLTDYR-- 188
C C G + P C C TC +
Sbjct: 25 VLRSNRVEYCWCNSGRAQC----------HSVPVKSCSEPR--C-FNGGTCQQALYFSDF 71
Query: 189 TCNCDPGYQ 197
C C G+
Sbjct: 72 VCQCPEGFA 80
>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane
protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens}
SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A
Length = 157
Score = 34.0 bits (78), Expect = 0.020
Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
Query: 203 DRRVAFVCTDVDECMNYPPICNNNADCINRPGTYQCQCKRGFSGDGFNCEE 253
++ +C C+ + +C+ Y C+C GFSG CE+
Sbjct: 110 SKKKLALCYTAACT---NTSCSGHGECVETINNYTCKCDPGFSGL--KCEQ 155
Score = 31.3 bits (71), Expect = 0.17
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 125 CHKNAMCFNEIGSYSCQCRPGFTG 148
C + C I +Y+C+C PGF+G
Sbjct: 127 CSGHGECVETINNYTCKCDPGFSG 150
Score = 27.0 bits (60), Expect = 4.6
Identities = 9/32 (28%), Positives = 12/32 (37%), Gaps = 2/32 (6%)
Query: 167 CESDPRACNPP--HSTCTNLTDYRTCNCDPGY 196
C + H C + TC CDPG+
Sbjct: 117 CYTAACTNTSCSGHGECVETINNYTCKCDPGF 148
>1szb_A Mannose binding lectin-associated serine protease-2 related
protein, MAP19 (19KDA)...; calcium, complement, innate
immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1
g.3.11.1
Length = 170
Score = 33.4 bits (76), Expect = 0.037
Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 3/49 (6%)
Query: 110 FGCFDINECNAGTDLCH-KNAMCFNEIGSYSCQCRPGFT--GNGHQCTE 155
+ DI+EC + C N +G + C CR G+ N C+E
Sbjct: 119 YAAEDIDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRTCSE 167
Score = 31.1 bits (70), Expect = 0.24
Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 3/52 (5%)
Query: 205 RVAFVCTDVDECMNYPPICNN-NADCINRPGTYQCQCKRGF--SGDGFNCEE 253
+ D+DEC P + C N G + C C+ G+ + C E
Sbjct: 116 EAFYAAEDIDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRTCSE 167
Score = 29.5 bits (66), Expect = 0.70
Identities = 8/38 (21%), Positives = 10/38 (26%)
Query: 160 QTGPTSPCESDPRACNPPHSTCTNLTDYRTCNCDPGYQ 197
C+ P C N C+C GY
Sbjct: 120 AAEDIDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYV 157
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane,
secreted, protease, PALM hydrolase, developmental
protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo
sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Length = 463
Score = 34.2 bits (78), Expect = 0.047
Identities = 21/101 (20%), Positives = 35/101 (34%), Gaps = 24/101 (23%)
Query: 160 QTGPTSPCESDPRACNPPHSTCTNLTD------YRTCNCDPGYQKDYLDDRRVAFVCTDV 213
+ C + + S C+ L C C PG++ D+ +
Sbjct: 374 RPLMPEECRATVQPAQTLTSECSRLCRNGYCTPTGKCCCSPGWEGDFCRTAKCE------ 427
Query: 214 DECMNYPPICNNNADCINRPGTYQCQCKRGFSGDGFNCEEG 254
P C + C+ RP +C CK+G+ G CE+
Sbjct: 428 -------PACRHGGVCV-RPN--KCLCKKGYLGP--QCEQV 456
>2arp_F Follistatin; cystine knot, disulfide rich, EGF domain, kazal
domain, PROT complex, hormone-growth factor complex;
HET: 1PG; 2.00A {Rattus norvegicus}
Length = 152
Score = 32.9 bits (74), Expect = 0.053
Identities = 22/117 (18%), Positives = 33/117 (28%), Gaps = 2/117 (1%)
Query: 69 DPCKNFFCVANSSCIVEDD-KPTCICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLCHK 127
+ C+N C C + KP C+C + + + G NEC C +
Sbjct: 4 ETCENVDCGPGKKCRMNKKNKPRCVCAPDCSNITWKGPVCGLDGKTYRNECALLKARCKE 63
Query: 128 NA-MCFNEIGSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDPRACNPPHSTCTN 183
+ G CR F C + P + S C N
Sbjct: 64 QPELEVQYQGKCKKTCRDVFCPGSSTCVVDQTNNAYCVTCNRICPEPSSSEQSLCGN 120
>1zjk_A Mannan-binding lectin serine protease 2; beta barrel, modular
protein, hydrolase; 2.18A {Homo sapiens} SCOP: b.47.1.2
g.18.1.1 g.18.1.1 PDB: 1q3x_A
Length = 403
Score = 33.6 bits (77), Expect = 0.056
Identities = 22/116 (18%), Positives = 35/116 (30%), Gaps = 18/116 (15%)
Query: 161 TGPTSPCESDPRACNPPHSTCTN------LTDYRTCNCDPGYQ--KDYLDDRRVAFVCTD 212
T C P PP+ + L D + C+ GY+ + +L + VC
Sbjct: 11 TSTAHAC---PYPMAPPNGHVSPVQAKYILKDSFSIFCETGYELLQGHLPLKSFTAVCQK 67
Query: 213 VDECMNYPPICN-----NNADCINRPGTYQCQCKRGFSGDG--FNCEEGKYCLVVG 261
P C+ D + Y ++CEE Y + V
Sbjct: 68 DGSWDRPMPACSIVDCGPPDDLPSGRVEYITGPGVTTYKAVIQYSCEETFYTMKVN 123
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.5 bits (76), Expect = 0.095
Identities = 15/96 (15%), Positives = 30/96 (31%), Gaps = 26/96 (27%)
Query: 185 TDYRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYP-PICNNNADCINRPG-TYQCQCKR 242
++Y +PG + +V V + + I N N Y
Sbjct: 1805 SNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNV-----ENQQYVA---- 1855
Query: 243 GFSGDGFNCEEGKYCLVVGI-TLCKMYLEVVNIQEI 277
+GD + + T+ + L + +Q+I
Sbjct: 1856 --AGD-----------LRALDTVTNV-LNFIKLQKI 1877
>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease,
hydrolase, polymorphism, glycoprotein,
gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo
sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L*
2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L*
2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L*
2y5h_L* ...
Length = 55
Score = 30.0 bits (68), Expect = 0.10
Identities = 10/28 (35%), Positives = 11/28 (39%), Gaps = 2/28 (7%)
Query: 131 CFNEIGSYSCQCRPGFT--GNGHQCTEI 156
C E S C C G+T NG C
Sbjct: 15 CHEEQNSVVCSCARGYTLADNGKACIPT 42
Score = 27.3 bits (61), Expect = 1.0
Identities = 7/27 (25%), Positives = 11/27 (40%), Gaps = 2/27 (7%)
Query: 229 CINRPGTYQCQCKRGF--SGDGFNCEE 253
C + C C RG+ + +G C
Sbjct: 15 CHEEQNSVVCSCARGYTLADNGKACIP 41
>1nzi_A Complement C1S component; calcium, innate immunity, modular
structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens}
SCOP: b.23.1.1 g.3.11.1
Length = 159
Score = 31.7 bits (72), Expect = 0.12
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
Query: 109 DFGCFDINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFT--GNGHQCT 154
+ DINEC D+ + C N IG Y C C P + + C
Sbjct: 111 YYVATDINECTDFVDVPCSH-FCNNFIGGYFCSCPPEYFLHDDMKNCG 157
Score = 29.4 bits (66), Expect = 0.86
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 205 RVAFVCTDVDECMNYPPICNNNADCINRPGTYQCQCKRGF--SGDGFNCE 252
+V TD++EC ++ + ++ C N G Y C C + D NC
Sbjct: 109 AAYYVATDINECTDFVDVPCSH-FCNNFIGGYFCSCPPEYFLHDDMKNCG 157
>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system,
membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo
sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A*
1fsb_A
Length = 162
Score = 31.7 bits (72), Expect = 0.15
Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 220 PPICNNNADCINRPGTYQCQCKRGFSGDGFNCE 252
C+ +C+ G Y C C GF G CE
Sbjct: 124 DMSCSKQGECLETIGNYTCSCYPGFYGP--ECE 154
Score = 26.3 bits (58), Expect = 7.6
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 122 TDLCHKNAMCFNEIGSYSCQCRPGFTGN 149
C K C IG+Y+C C PGF G
Sbjct: 124 DMSCSKQGECLETIGNYTCSCYPGFYGP 151
>2kl7_A Fibulin-4; secreted, calcium, disease mutation, disulfide bond,
EGF- like domain, glycoprotein, polymorphism, structural
genomics, PSI-2; NMR {Homo sapiens}
Length = 71
Score = 29.6 bits (66), Expect = 0.18
Identities = 15/56 (26%), Positives = 19/56 (33%), Gaps = 2/56 (3%)
Query: 114 DINECNAGTDLCHKNAMCFNEIGSYSCQCRPG--FTGNGHQCTEITVPQTGPTSPC 167
D+NEC + C C N G Y C R + VP +PC
Sbjct: 2 DVNECLTIPEACKGEMKCINHYGGYLCLPRSAAVINDLHGEGPPPPVPPAQHPNPC 57
Score = 27.3 bits (60), Expect = 1.4
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 211 TDVDECMNYPPICNNNADCINRPGTYQC 238
+DV+EC+ P C CIN G Y C
Sbjct: 1 SDVNECLTIPEACKGEMKCINHYGGYLC 28
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET:
NAG; 2.85A {Rattus norvegicus}
Length = 349
Score = 31.8 bits (71), Expect = 0.23
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Query: 213 VDECMNYPPICNNNADCINRPGTYQCQCKRGFSGDG 248
V+EC C+ C N G +QC C+ G+
Sbjct: 1 VNECAE-EGYCSQ--GCTNSEGAFQCWCEAGYELRP 33
Score = 30.2 bits (67), Expect = 0.73
Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 3/40 (7%)
Query: 115 INECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGNGHQCT 154
+NEC C + C N G++ C C G+ + +
Sbjct: 1 VNECAE-EGYCSQ--GCTNSEGAFQCWCEAGYELRPDRRS 37
Score = 26.8 bits (58), Expect = 9.3
Identities = 10/58 (17%), Positives = 14/58 (24%), Gaps = 5/58 (8%)
Query: 201 LDDRRVAFVCTDVDECMNYPPICNNNAD----CINRPGTYQCQCKRGFS-GDGFNCEE 253
L + +NN C+ Y C C GF + C
Sbjct: 286 LHFPMDIHTLHPQRQPAGKNRCGDNNGGCTHLCLPSGQNYTCACPTGFRKINSHACAL 343
>3cfw_A L-selectin; EGF, cell adhesion, EGF-like domain, glycoprotein,
membrane, sushi, transmembrane; HET: NAG MAN BMA; 2.20A
{Homo sapiens}
Length = 164
Score = 30.2 bits (68), Expect = 0.42
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 220 PPICNNNADCINRPGTYQCQCKRGFSGDGFNCE 252
P C+ + +C+ Y C C G+ G C+
Sbjct: 124 PWSCSGHGECVEIINNYTCNCDVGYYGP--QCQ 154
Score = 26.3 bits (58), Expect = 8.0
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 125 CHKNAMCFNEIGSYSCQCRPGFTGN 149
C + C I +Y+C C G+ G
Sbjct: 127 CSGHGECVEIINNYTCNCDVGYYGP 151
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation,
neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos
taurus}
Length = 410
Score = 31.1 bits (70), Expect = 0.42
Identities = 10/45 (22%), Positives = 15/45 (33%), Gaps = 5/45 (11%)
Query: 214 DECMNYPPICNNNADCINRPGTYQCQCK-RGFSGDGFNCEEGKYC 257
C C+N C+ + + C C FSG C +
Sbjct: 186 TTCQEDS--CSNQGVCLQQWDGFSCDCSMTSFSGP--LCNDPGTT 226
Score = 28.4 bits (63), Expect = 2.6
Identities = 9/66 (13%), Positives = 14/66 (21%), Gaps = 1/66 (1%)
Query: 121 GTDLCHKNAMCFNEIGSYSCQCRPGFTGNGHQCTEITVPQTGP-TSPCESDPRACNPPHS 179
D C +C + +SC C T + P +
Sbjct: 189 QEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCNDPGTTYIFSKGGGQITYKWPPNDRPST 248
Query: 180 TCTNLT 185
L
Sbjct: 249 RADRLA 254
>3hh2_C Follistatin; protein-protein complex, TB domain, cystine knot
motif, TGF- fold, disulfide linked dimer, CLE PAIR of
basic residues, cytokine; HET: CIT; 2.15A {Homo sapiens}
PDB: 2b0u_C* 2p6a_D
Length = 288
Score = 30.8 bits (68), Expect = 0.43
Identities = 27/198 (13%), Positives = 49/198 (24%), Gaps = 3/198 (1%)
Query: 69 DPCKNFFCVANSSCIV-EDDKPTCICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLCHK 127
+ C+N C C + + +KP C+C + + + G NEC C +
Sbjct: 64 ETCENVDCGPGKKCRMNKKNKPRCVCAPDCSNITWKGPVCGLDGKTYRNECALLKARCKE 123
Query: 128 NAMC-FNEIGSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDPRACNPPHSTC-TNLT 185
G CR F C + P + C +
Sbjct: 124 QPELEVQYQGRCKKTCRDVFCPGSSTCVVDQTNNAYCVTCNRICPEPASSEQYLCGNDGV 183
Query: 186 DYRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCINRPGTYQCQCKRGFS 245
Y + +A+ + C C+ + +C
Sbjct: 184 TYSSACHLRKATCLLGRSIGLAYEGKCIKAKSCEDIQCTGGKKCLWDFKVGRGRCSLCDE 243
Query: 246 GDGFNCEEGKYCLVVGIT 263
+ + C T
Sbjct: 244 LCPDSKSDEPVCASDNAT 261
>3b4v_C Follistatin-like 3; ligand-inhibitor signalling complex, cleavage
on PAIR of BAS residues, glycoprotein, growth factor,
hormone, secreted; HET: NAG; 2.48A {Homo sapiens}
Length = 237
Score = 30.6 bits (68), Expect = 0.46
Identities = 22/112 (19%), Positives = 30/112 (26%), Gaps = 4/112 (3%)
Query: 69 DPCKNFFCVANSSCIVEDDKPTCICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLC-HK 127
D C C +C + +P C C L + ++ G +EC C
Sbjct: 71 DSCDGVECGPGKACRMLGGRPRCECAPDCSGLPARLQVCGSDGATYRDECELRAARCRGH 130
Query: 128 NAMCFNEIGSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDPRACNPPHS 179
+ G C C V QTG C P S
Sbjct: 131 PDLSVMYRGRCRKSCEHVVCPRPQSC---VVDQTGSAHCVVCRAAPCPVPSS 179
>1kig_L Factor XA; glycoprotein, serine protease, plasma, blood
coagulation, complex (protease/inhibitor); 3.00A {Bos
taurus} SCOP: g.3.11.1
Length = 51
Score = 28.1 bits (63), Expect = 0.51
Identities = 6/28 (21%), Positives = 8/28 (28%), Gaps = 2/28 (7%)
Query: 131 CFNEIGSYSCQCRPGFT--GNGHQCTEI 156
C E C C G+ + C
Sbjct: 12 CREERSEVRCSCAHGYVLGDDSKSCVST 39
Score = 26.9 bits (60), Expect = 1.1
Identities = 6/26 (23%), Positives = 9/26 (34%), Gaps = 2/26 (7%)
Query: 229 CINRPGTYQCQCKRGF--SGDGFNCE 252
C +C C G+ D +C
Sbjct: 12 CREERSEVRCSCAHGYVLGDDSKSCV 37
>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera
phosphorylation, transmembrane, tyrosine-protein kinase,
glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB:
2x10_A* 2x11_A 3mx0_A* 3mbw_A*
Length = 536
Score = 30.9 bits (69), Expect = 0.52
Identities = 19/105 (18%), Positives = 37/105 (35%), Gaps = 6/105 (5%)
Query: 62 HSSTVNDDPCKNFFCVANSSCIVEDDKPTCICNRGFQQLYSEDRLQDDFGCFDINECNAG 121
H+ C + +V C+C G++++ + G F +
Sbjct: 238 HAVVPPGGEEPRMHCAVDGEWLV--PIGQCLCQAGYEKVEDACQ-ACSPGFFKFEASESP 294
Query: 122 TDLCHKNAMCFNEIGSYSCQCRPGFTGNGHQCTEITVPQTGPTSP 166
C ++ + + G+ SC+C GF ++P T P S
Sbjct: 295 CLECPEHTLP-SPEGATSCECEEGFF--RAPQDPASMPCTRPPSA 336
>2rjp_A Adamts-4; metalloprotease domain, aggrecanase, cleavage on PAIR of
basic residues, extracellular matrix, glycoprotein,
hydrolase, metal-binding; HET: 886; 2.80A {Homo sapiens}
PDB: 3b2z_A
Length = 316
Score = 30.3 bits (68), Expect = 0.62
Identities = 12/44 (27%), Positives = 15/44 (34%)
Query: 215 ECMNYPPICNNNADCINRPGTYQCQCKRGFSGDGFNCEEGKYCL 258
C PP C + G CQ K DG C + C+
Sbjct: 247 HCPQLPPPCAALWCSGHLNGHAMCQTKHSPWADGTPCGPAQACM 290
>1lr7_A Follistatin, FS1; heparin-binding, cystine-rich, sucrose
octasulphate, hormone/growth factor complex; HET: SO4;
1.50A {Rattus norvegicus} SCOP: g.3.11.3 g.68.1.1 PDB:
1lr8_A* 1lr9_A
Length = 74
Score = 28.3 bits (63), Expect = 0.65
Identities = 8/28 (28%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 69 DPCKNFFCVANSSCIV-EDDKPTCICNR 95
+ C+N C C + + +KP C+C
Sbjct: 2 ETCENVDCGPGKKCRMNKKNKPRCVCAP 29
>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen
activating factor, S protease, complement system; HET:
NAG; 2.69A {Homo sapiens}
Length = 565
Score = 30.7 bits (69), Expect = 0.66
Identities = 17/89 (19%), Positives = 30/89 (33%), Gaps = 7/89 (7%)
Query: 168 ESDPRACNPPHSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNA 227
E+ C D+ C +DD F C + + ++ C+
Sbjct: 172 ETSLAECTFTKRRTMGYQDFADVVCYTQKADSPMDDF---FQCVN-GKYISQMKACDGIN 227
Query: 228 DCINRPGTYQCQCKRGFSGDGFNCEEGKY 256
DC ++ C+ G GF+C+ G
Sbjct: 228 DCGDQSDELCCKA---CQGKGFHCKSGVC 253
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL
receptor-like protein, dickko YWTD B-propeller,
signaling protein; HET: NAG; 2.80A {Homo sapiens}
Length = 619
Score = 30.2 bits (67), Expect = 0.84
Identities = 12/46 (26%), Positives = 16/46 (34%), Gaps = 6/46 (13%)
Query: 212 DVDECMNYPPICNNNADC----INRPGTYQCQCKRGF--SGDGFNC 251
+V + P N C + RP +C C GF D C
Sbjct: 571 NVHRVIGSNPCAEENGGCSHLCLYRPQGLRCACPIGFELISDMKTC 616
Score = 30.2 bits (67), Expect = 0.88
Identities = 23/124 (18%), Positives = 34/124 (27%), Gaps = 4/124 (3%)
Query: 110 FGCFDINECNAGTDLCHKNAMCFNEIG-SYSCQCRPGFTGNGHQCTEITVPQTGPTSPCE 168
F DI+ + N + G S+ C P C T +
Sbjct: 255 FSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCAC--PTGVKLLENGKTC 312
Query: 169 SDPRACNPPHSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNAD 228
D + T+L D L+D R A + D D Y ++
Sbjct: 313 KDGATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHA-IAIDYDPVEGYIYWTDDEVR 371
Query: 229 CINR 232
I R
Sbjct: 372 AIRR 375
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex,
beta propeller, cholesterol clearance, PCSK
autocatalytic cleavage; 7.01A {Homo sapiens}
Length = 791
Score = 30.2 bits (67), Expect = 0.99
Identities = 28/206 (13%), Positives = 49/206 (23%), Gaps = 3/206 (1%)
Query: 71 CKNFFCVANSSCIVEDDKPTCICNRGFQQLYSEDRLQDDFGCFDINECNAGTD---LCHK 127
C + + S V T + +S + + D C +C +D
Sbjct: 252 CDREYDCKDMSDEVGCVNVTLCEGPNKFKCHSGECITLDKVCNMARDCRDWSDEPIKECG 311
Query: 128 NAMCFNEIGSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDPRACNPPHSTCTNLTDY 187
C + G S C G C + + + + C NL
Sbjct: 312 TNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGG 371
Query: 188 RTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCINRPGTYQCQCKRGFSGD 247
C C+ G+Q D A N + D
Sbjct: 372 YKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDT 431
Query: 248 GFNCEEGKYCLVVGITLCKMYLEVVN 273
+ + +C L+ +
Sbjct: 432 EVASNRIYWSDLSQRMICSTQLDRAH 457
Score = 29.4 bits (65), Expect = 1.5
Identities = 30/191 (15%), Positives = 51/191 (26%), Gaps = 19/191 (9%)
Query: 71 CKNFFCVANSSCIVEDDKPTCICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLCHKNAM 130
C + C++ V D C+ F C + + C C +
Sbjct: 113 CHDGKCISRQ--FVCDSDRDCLDGSDEASCPVLTCGPASFQC-NSSTCIPQLWACDNDPD 169
Query: 131 CFNEIGSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDPRACNPPHSTCTNLTDYRTC 190
C + + +CR + G + C C+ C + +D C
Sbjct: 170 CEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGECIHSSWRCD-GGPDCKDKSDEENC 228
Query: 191 N---CDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCINRPGTYQCQCKRGFSGD 247
C P F C+D C++ C+ DC + C G
Sbjct: 229 AVATCRPDE-----------FQCSD-GNCIHGSRQCDREYDCKDMSDEVGCVNVTLCEGP 276
Query: 248 GFNCEEGKYCL 258
C+
Sbjct: 277 NKFKCHSGECI 287
>1nub_A Basement membrane protein BM-40; extracellular module,
glycoprotein, anti-adhesive protein, C binding,
site-directed mutagenesis; HET: NAG; 2.80A {Homo
sapiens} SCOP: a.39.1.3 g.3.11.3 g.68.1.1 PDB: 2v53_A*
1bmo_A*
Length = 229
Score = 29.5 bits (65), Expect = 1.1
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 69 DPCKNFFCVANSSCIV-EDDKPTCICNR 95
PC+N C C + E++ P C+C
Sbjct: 4 APCQNHHCKHGKVCELDENNTPMCVCQD 31
>1gpz_A Complement C1R component; hydrolase, activation, innate immunity,
modular structure, serine protease; HET: NAG FUC MAN;
2.9A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1
Length = 399
Score = 29.4 bits (66), Expect = 1.4
Identities = 12/76 (15%), Positives = 20/76 (26%), Gaps = 15/76 (19%)
Query: 186 DYRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCINRPGTYQCQCKRGFS 245
DY C GYQ + ++ +C ++ C+ K
Sbjct: 26 DYFIATCKQGYQ-----------LIEGNQVLHSFTAVCQDDGTWHRAMPR--CKIKD--C 70
Query: 246 GDGFNCEEGKYCLVVG 261
G N G +
Sbjct: 71 GQPRNLPNGDFRYTTT 86
>3sek_C Follistatin-related protein 3; protein-protein complex, TB domain,
cystine knot motif, TGF- fold, disulfide linked dimer,
follistatin domain (FSD); HET: NAG; 2.40A {Homo sapiens}
PDB: 2kcx_A
Length = 209
Score = 29.1 bits (64), Expect = 1.5
Identities = 16/112 (14%), Positives = 27/112 (24%), Gaps = 1/112 (0%)
Query: 69 DPCKNFFCVANSSCIVEDDKPTCICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLCHKN 128
D C C +C + +P C C L + ++ G +EC C +
Sbjct: 62 DSCDGVECGPGKACRMLGGRPRCECAPDCSGLPARLQVCGSDGATYRDECELRAARCRGH 121
Query: 129 -AMCFNEIGSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDPRACNPPHS 179
+ G C C + + P
Sbjct: 122 PDLSVMYRGRCRKSCEHVVCPRPQSCVVDQTGSAHCVVCRAAPCPVPSSPGQ 173
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A
{Mus musculus}
Length = 525
Score = 29.3 bits (65), Expect = 1.5
Identities = 32/169 (18%), Positives = 44/169 (26%), Gaps = 40/169 (23%)
Query: 93 CNRGFQQLYSEDRLQDDFGCFDINECNAGTDLCHKNAMCFNEIGSYS----CQCRPGFTG 148
C + L + CN + CH + F G+ S C+ G
Sbjct: 295 CMDFYHDLPWRPAEGRNSNACKKCNCNEHSSSCHFDMAVFLATGNVSGGVCDNCQHNTMG 354
Query: 149 NGHQCTEITVPQTGPTSPCESDPRACNPPHSTCTNLTDYRTCNCDPGYQKDYLDDRRVAF 208
C + DP C P C CDP
Sbjct: 355 --RNCEQCKPFYFQHPERDIRDPNLCEP-------------CTCDP-------------- 385
Query: 209 VCTDVDECMNYPPICNNNADCINRPGTYQCQCKRGFSGDGFN-CEEGKY 256
IC+ D QC+CK G+ + C+EG Y
Sbjct: 386 ------AGSENGGICDGYTDFSVGLIAGQCRCKLHVEGERCDVCKEGFY 428
Score = 27.0 bits (59), Expect = 7.8
Identities = 26/157 (16%), Positives = 38/157 (24%), Gaps = 29/157 (18%)
Query: 112 CFDINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTG-NGHQCTE----ITVPQTGPTSP 166
C N G + + G C+C+ G C E ++
Sbjct: 383 CDPAGSENGGICDGYTDFSVGLIAGQ--CRCKLHVEGERCDVCKEGFYDLSAEDPYGCKS 440
Query: 167 CESDPRACNPPHSTCTNLTDYRTCNCDPGY--------QKDYLDDRRVAFVCT--DVDEC 216
C +P P + C + T C C + C D D
Sbjct: 441 CACNPLGTIPGGNPCDSET--GYCYCKRLVTGQRCDQCLPQHWGLSNDLDGCRPCDCDLG 498
Query: 217 MNYPPICNNNADCINRPGTYQCQCKRGFSGDGFNCEE 253
C+ + QC C G C E
Sbjct: 499 GALNNSCS--------EDSGQCSCLPHMIGR--QCNE 525
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller,
lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1
g.3.11.1
Length = 316
Score = 28.5 bits (63), Expect = 2.3
Identities = 9/45 (20%), Positives = 12/45 (26%), Gaps = 3/45 (6%)
Query: 112 CFDINECNAG-TDLCHKNAMCFNEIGSYSCQCRPGFT--GNGHQC 153
C N G LC ++C C G + C
Sbjct: 270 CERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSC 314
>2ddu_A Reelin; beta-jelly-roll, signaling protein; 2.05A {Mus musculus}
Length = 387
Score = 28.5 bits (62), Expect = 2.4
Identities = 20/117 (17%), Positives = 30/117 (25%), Gaps = 4/117 (3%)
Query: 97 FQQLYSEDRLQDDFGCFDINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGNGHQCTEI 156
+ Q S + FG + C + C + + C C G+T C
Sbjct: 170 WIQESSSQKNVPPFGLDGVYISEPCPSYCSGHGDCISGV----CFCDLGYTAAQGTCVSN 225
Query: 157 TVPQTGPTSPCESDPRACNPPHSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCTDV 213
T + E + T T N + L R V D
Sbjct: 226 TPNHSEMFDRFEGKLSPLWYKITGGQVGTGCGTLNDGRSLYFNGLGKREARTVPLDT 282
>3qsd_A Cathepsin B-like peptidase (C01 family); cysteine peptidase,
digestive tract, hydrolase-hydrolase INH complex; HET:
074; 1.30A {Schistosoma mansoni} PDB: 3s3q_A* 3s3r_A*
Length = 254
Score = 28.4 bits (64), Expect = 2.6
Identities = 16/68 (23%), Positives = 21/68 (30%), Gaps = 8/68 (11%)
Query: 163 PTSPCESDPRACNPPHSTCTNLTDYRTCNCDPGYQKDYLDDRRVA----FVCTDVD---- 214
P CE + PP + T C Y+ Y D+ V D
Sbjct: 105 PFPKCEHHTKGKYPPCGSKIYKTPRCKQTCQKKYKTPYTQDKHRGKSSYNVKNDEKAIQK 164
Query: 215 ECMNYPPI 222
E M Y P+
Sbjct: 165 EIMKYGPV 172
>1haq_A Complement factor H; immunology, glycoprotein, complement alternate
pathway, SCR, CCP; NMR {Homo sapiens} PDB: 3gau_A 3gav_A
3gaw_A 2qfh_A 2qfg_A 1hfh_A 2kms_A 1hfi_A 1hcc_A
Length = 1213
Score = 28.2 bits (62), Expect = 3.7
Identities = 29/216 (13%), Positives = 57/216 (26%), Gaps = 40/216 (18%)
Query: 70 PCKNFFCVANSSCIVEDDKPTCICNRGFQQLYSEDRL-QDDFGCFDINECNAGTDLC--- 125
+N + + V+ C+ G+ ++ + + G C
Sbjct: 375 YLENGYNQNHGRKFVQGKSIDVACHPGYALPKAQTTVTCMENGWSPTPRCIRVKTCSKSS 434
Query: 126 --HKNAMCFNEIGSYSC------QCRPGFTGNGHQCTEITVPQTGPTSPCESDPRACNPP 177
+N +Y+ QC+ G+ + + S + ++C+ P
Sbjct: 435 IDIENGFISESQYTYALKEKAKYQCKLGYVTADGETSGSIRCGKDGWSAQPTCIKSCDIP 494
Query: 178 ---------HSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPIC----- 223
T L D C GY + + PIC
Sbjct: 495 VFMNARTKNDFTWFKLNDTLDYECHDGY---ESNTGSTTGSIVCGYNGWSDLPICYEREC 551
Query: 224 -----NNNADCINRPGTY------QCQCKRGFSGDG 248
+ + + Y + CK GF+ G
Sbjct: 552 ELPKIDVHLVPDRKKDQYKVGEVLKFSCKPGFTIVG 587
>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell
adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A
Length = 217
Score = 27.7 bits (61), Expect = 3.8
Identities = 21/146 (14%), Positives = 38/146 (26%), Gaps = 18/146 (12%)
Query: 114 DINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGNGHQCTEITVPQTGPTSPC--ESDP 171
+ + LCH I C+C G+ G +C C +++
Sbjct: 87 RCRDQSRDRSLCHGKGFLECGI----CRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNS 142
Query: 172 RACNPPHSTCTNLTDYRTCNCDPGYQ-KDYLDDRRVAFVCTDVDECMNYPPICNNNADCI 230
C+ C C C + + + + C
Sbjct: 143 IICS-GLGDCVC----GQCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCF 197
Query: 231 NRPGTYQCQCKRGFSGDGFNCEEGKY 256
+C+C GF G C+ +
Sbjct: 198 C----GKCRCHPGFEGS--ACQHHHH 217
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial
hypercholesterolemia, cholestero metabolism, lipid
transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens}
SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1
g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A
1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Length = 699
Score = 28.2 bits (62), Expect = 4.0
Identities = 22/165 (13%), Positives = 37/165 (22%), Gaps = 3/165 (1%)
Query: 112 CFDINECNAGTD---LCHKNAMCFNEIGSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCE 168
C +C +D C + G S C G C +
Sbjct: 275 CNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDI 334
Query: 169 SDPRACNPPHSTCTNLTDYRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNAD 228
+ + + C NL C C+ G+Q D A N + D
Sbjct: 335 DECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLD 394
Query: 229 CINRPGTYQCQCKRGFSGDGFNCEEGKYCLVVGITLCKMYLEVVN 273
+ + +C L+ +
Sbjct: 395 RSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAH 439
>2gsx_A Complement receptor type 2; SCR domain, CCP domain, sushi domain,
immune system; NMR {Homo sapiens}
Length = 951
Score = 27.4 bits (60), Expect = 6.3
Identities = 15/122 (12%), Positives = 29/122 (23%), Gaps = 13/122 (10%)
Query: 125 CHKNAMCFNEIGSYSCQCRPGFTGNGHQCTEITVPQTG--PTSPCESDPRACNPPHS--- 179
+ + + + C+ G+ GH + G C+PP
Sbjct: 648 SLQELPAGSRVELVNTSCQDGYQLTGHAYQMCQDAENGIWFKKIPLCKVIHCHPPPVIVN 707
Query: 180 ---TCTNLTDYR-----TCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCIN 231
T ++ + CD G+ + P C +
Sbjct: 708 GKHTGMMAENFLYGNEVSYECDQGFYLLGEKKLQCRSDSKGHGSWSGPSPQCLRSPPVTR 767
Query: 232 RP 233
P
Sbjct: 768 CP 769
Score = 27.0 bits (59), Expect = 8.6
Identities = 28/166 (16%), Positives = 46/166 (27%), Gaps = 20/166 (12%)
Query: 112 CFDINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDP 171
C K+ +N+ ++C GFT G + T S +
Sbjct: 331 CPHPQILRGRMVSGQKDRYTYNDTVIFACM--FGFTLKGSKQIRCNAQGTWEPSAPVCEK 388
Query: 172 RACNPPH-----STCTNLTDYR-----TCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPP 221
PP+ ++ + +C+PGY + CT P
Sbjct: 389 ECQAPPNILNGQKEDRHMVRFDPGTSIKYSCNPGYVLVGEESI----QCTSEGVWTPPVP 444
Query: 222 ICNNNADCINRPGTYQCQCKRGFSGDG--FNCEEGKYCLVVGITLC 265
C A C + + F +C EG Y L +
Sbjct: 445 QC-KVAACEATGRQLLTKPQHQFVRPDVNSSCGEG-YKLSGSVYQE 488
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG;
2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A
Length = 625
Score = 27.1 bits (60), Expect = 8.3
Identities = 14/127 (11%), Positives = 26/127 (20%), Gaps = 12/127 (9%)
Query: 69 DPCKNFFCVANSSCIVEDDKPTCICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLCHKN 128
K ++ S C+ F Y + + + C K
Sbjct: 267 TRIKKSKALSGFSLQSCRHSIPVFCHSSF---YHDTDFLGEELDI---VAAKSHEACQKL 320
Query: 129 AMCFNEIGSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDPRACNPPHSTCTNLTDYR 188
+ CQ +T C E S S + +
Sbjct: 321 CT-----NAVRCQ-FFTYTPAQASCNEGKGKCYLKLSSNGSPTKILHGRGGISGYTLRLC 374
Query: 189 TCNCDPG 195
+ +
Sbjct: 375 KMDNECT 381
>1igr_A Insulin-like growth factor receptor 1; hormone receptor, insulin
receptor family; HET: NAG FUC BMA MAN; 2.60A {Homo
sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
Length = 478
Score = 27.1 bits (59), Expect = 8.3
Identities = 18/186 (9%), Positives = 35/186 (18%), Gaps = 10/186 (5%)
Query: 67 NDDPCKNFFCVANSSCIVEDDKPTCICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLCH 126
C + + + + + C C + CH
Sbjct: 144 PPKECGDLCPGTMEEKPMCEKTTINNEYNYRCWTTNRCQKMCPSTCGK-RACTENNECCH 202
Query: 127 KN--AMCFNEIGSYSCQ-CRPGFTGNG--HQCTEITVPQTGPTSPCESDPRACNPPHSTC 181
C +C CR + C T G S+
Sbjct: 203 PECLGSCSAPDNDTACVACRHYYYAGVCVPACPPNTYRFEGWRCVDRDFCANILSAESSD 262
Query: 182 TN--LTDYRTC--NCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCINRPGTYQ 237
+ + C C G+ ++ + +
Sbjct: 263 SEGFVIHDGECMQECPSGFIRNGSQSMYCIPCEGPCPKVCEEEKKTKTIDSVTSAQMLQG 322
Query: 238 CQCKRG 243
C +G
Sbjct: 323 CTIFKG 328
>4dur_A Plasminogen, serine protease; fibrinolysis, hydrolase; HET: NAG GAL
SIA; 2.45A {Homo sapiens} PDB: 4a5t_S* 4duu_A 2feb_A
Length = 791
Score = 26.9 bits (59), Expect = 9.8
Identities = 24/140 (17%), Positives = 40/140 (28%), Gaps = 9/140 (6%)
Query: 114 DINECNAGTDLCHKNAMCFNEIG-SYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDPR 172
DI C C G +Y T +GH C + + +
Sbjct: 239 DIPRCTTPPPSSGPTYQCLKGTGENYRGNV--AVTVSGHTCQHWSAQTPHTHNRTPENFP 296
Query: 173 ACNPPHSTCTNLTDYRTCNC---DPGYQKDYLDDRR--VAFVCTDVDECMNYPPICNNNA 227
N + C N R C + + +Y + V T+ P +
Sbjct: 297 CKNLDENYCRNPDGKRAPWCHTTNSQVRWEYCKIPSCDSSPVSTEQLAPTAPPELTPVVQ 356
Query: 228 DCINRPG-TYQCQCKRGFSG 246
DC + G +Y+ +G
Sbjct: 357 DCYHGDGQSYRGTSSTTTTG 376
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.138 0.458
Gapped
Lambda K H
0.267 0.0548 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,452,244
Number of extensions: 268185
Number of successful extensions: 1639
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1027
Number of HSP's successfully gapped: 449
Length of query: 286
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 193
Effective length of database: 4,105,140
Effective search space: 792292020
Effective search space used: 792292020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.1 bits)