RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5750
(286 letters)
>d1gl4a2 g.3.11.5 (A:359-398) EGF-like domain of nidogen-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 40
Score = 50.2 bits (120), Expect = 2e-09
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 118 CNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGNGHQCT 154
C C +A C + + C+C +TGNG QC
Sbjct: 2 CANNRHQCSVHAECRDYATGFCCRCVANYTGNGRQCV 38
Score = 41.0 bits (96), Expect = 3e-06
Identities = 10/36 (27%), Positives = 19/36 (52%)
Query: 216 CMNYPPICNNNADCINRPGTYQCQCKRGFSGDGFNC 251
C N C+ +A+C + + C+C ++G+G C
Sbjct: 2 CANNRHQCSVHAECRDYATGFCCRCVANYTGNGRQC 37
Score = 24.8 bits (54), Expect = 2.0
Identities = 7/33 (21%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 167 CESDPRACNPPHSTCTNLTDYRTCNCDPGYQKD 199
C ++ C+ H+ C + C C Y +
Sbjct: 2 CANNRHQCSV-HAECRDYATGFCCRCVANYTGN 33
>d1gl4a1 d.22.1.2 (A:399-631) Domain G2 of nidogen-1 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 233
Score = 51.0 bits (122), Expect = 3e-08
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 1 GVFNYSAELIF-STGQRLHVQEEFFGHDVYDQLKMQGSIQGTAPSIAVGVSPVLEDLQQE 59
G F AE+ F +L ++++F G D + L + ++G P I G S +E +
Sbjct: 86 GEFTRQAEVTFLGHPGKLVLKQQFSGIDEHGHLTISTELEGRVPQIPYGASVHIEPYTEL 145
Query: 60 FTHSSTV 66
+ +SS+V
Sbjct: 146 YHYSSSV 152
>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 43
Score = 45.1 bits (107), Expect = 1e-07
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 112 CFDINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGNGHQCT 154
D++EC K+ C N GSY C+C G+ G++C
Sbjct: 2 AVDMDECKEPD--VCKHGQCINTDGSYRCECPFGYILAGNECV 42
Score = 44.8 bits (106), Expect = 2e-07
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 210 CTDVDECMNYPPICNNNADCINRPGTYQCQCKRGFSGDGFNCE 252
D+DEC + CIN G+Y+C+C G+ G C
Sbjct: 2 AVDMDECKEPDVCKH--GQCINTDGSYRCECPFGYILAGNECV 42
>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein
1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 42
Score = 44.7 bits (106), Expect = 2e-07
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 114 DINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGN 149
D++EC+ G + C C N +GS+ CQC G+TG
Sbjct: 2 DVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGP 37
Score = 43.2 bits (102), Expect = 6e-07
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 212 DVDECMNYPPICNNNADCINRPGTYQCQCKRGFSGDGFNCE 252
DVDEC C + CIN G+++CQC +G++G CE
Sbjct: 2 DVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGP--RCE 40
>d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 44
Score = 42.1 bits (99), Expect = 2e-06
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 211 TDVDECMNYPPICNNNADCINRPGTYQCQCKRGFSGDGFNCEEGKYCL 258
TD+DEC P +C C+N PG ++C+C G+ K C+
Sbjct: 1 TDIDECRISPDLCGR-GQCVNTPGDFECKCDEGYESGFMM---MKNCM 44
Score = 41.0 bits (96), Expect = 3e-06
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 114 DINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGNG 150
DI+EC DLC C N G + C+C G+
Sbjct: 2 DIDECRISPDLCG-RGQCVNTPGDFECKCDEGYESGF 37
Score = 28.3 bits (63), Expect = 0.14
Identities = 10/38 (26%), Positives = 14/38 (36%), Gaps = 2/38 (5%)
Query: 167 CESDPRACNPPHSTCTNLTDYRTCNCDPGYQKDYLDDR 204
C P C C N C CD GY+ ++ +
Sbjct: 6 CRISPDLC--GRGQCVNTPGDFECKCDEGYESGFMMMK 41
>d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 43
Score = 39.4 bits (92), Expect = 1e-05
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 114 DINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFT--GNGHQC 153
DI+EC LC C N GS+ C+C G+ + C
Sbjct: 2 DIDECQELPGLCQ-GGKCINTFGSFQCRCPTGYYLNEDTRVC 42
Score = 39.0 bits (91), Expect = 2e-05
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 212 DVDECMNYPPICNNNADCINRPGTYQCQCKRGF--SGDGFNCE 252
D+DEC P +C CIN G++QC+C G+ + D C+
Sbjct: 2 DIDECQELPGLCQG-GKCINTFGSFQCRCPTGYYLNEDTRVCD 43
>d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 42
Score = 39.0 bits (91), Expect = 2e-05
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 114 DINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFT--GNGHQC 153
DI+EC LC +C N GSY C+C PG N C
Sbjct: 1 DIDECQRDPLLCR-GGVCHNTEGSYRCECPPGHQLSPNISAC 41
Score = 37.9 bits (88), Expect = 5e-05
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 212 DVDECMNYPPICNNNADCINRPGTYQCQCKRGF--SGDGFNC 251
D+DEC P +C C N G+Y+C+C G S + C
Sbjct: 1 DIDECQRDPLLCRG-GVCHNTEGSYRCECPPGHQLSPNISAC 41
Score = 24.8 bits (54), Expect = 1.9
Identities = 11/33 (33%), Positives = 13/33 (39%), Gaps = 2/33 (6%)
Query: 167 CESDPRACNPPHSTCTNLTDYRTCNCDPGYQKD 199
C+ DP C C N C C PG+Q
Sbjct: 5 CQRDPLLC--RGGVCHNTEGSYRCECPPGHQLS 35
>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 38.5 bits (90), Expect = 2e-05
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Query: 212 DVDECMNYPPICNNNADCINRPGTYQCQCKRGFSGDGFNCE 252
D D+C + P C N C + +Y+C C GF G NCE
Sbjct: 2 DGDQCESNP--CLNGGSCKDDINSYECWCPFGFEGK--NCE 38
Score = 36.2 bits (84), Expect = 1e-04
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 114 DINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTG 148
D ++C ++ C C ++I SY C C GF G
Sbjct: 2 DGDQCE--SNPCLNGGSCKDDINSYECWCPFGFEG 34
Score = 23.5 bits (51), Expect = 5.9
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 66 VNDDPCKNFFCVANSSCIVEDDKPTCICNRGFQ 98
V+ D C++ C+ SC + + C C GF+
Sbjct: 1 VDGDQCESNPCLNGGSCKDDINSYECWCPFGFE 33
>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 37
Score = 38.1 bits (89), Expect = 3e-05
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Query: 212 DVDECMNYPPICNNNADCINRPGTYQCQCKRGFSGDGFNCE 252
D D+C + P C N C ++ +Y C C F G NCE
Sbjct: 1 DGDQCASSP--CQNGGSCKDQLQSYICFCLPAFEGR--NCE 37
Score = 37.0 bits (86), Expect = 7e-05
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 114 DINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTG 148
D ++C + C C +++ SY C C P F G
Sbjct: 1 DGDQCA--SSPCQNGGSCKDQLQSYICFCLPAFEG 33
>d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo sapiens)
[TaxId: 9606]}
Length = 53
Score = 38.4 bits (89), Expect = 4e-05
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 8/49 (16%)
Query: 114 DINECNAGTDLCHKNAM------CFNEIGSYSCQCRPGFT--GNGHQCT 154
D++EC + + ++ C N +G Y C CRPG+ + H C
Sbjct: 3 DLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDRHSCQ 51
Score = 36.9 bits (85), Expect = 1e-04
Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 8/49 (16%)
Query: 212 DVDECMNYPPICNNNAD------CINRPGTYQCQCKRGF--SGDGFNCE 252
D+DEC + + C N G Y C C+ G+ D +C+
Sbjct: 3 DLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDRHSCQ 51
>d1dx5i3 g.3.11.1 (I:423-462) Thrombomodulin, different EGF-like
domains {Human (Homo sapiens) [TaxId: 9606]}
Length = 40
Score = 37.8 bits (88), Expect = 4e-05
Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Query: 114 DINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGNGHQCT 154
DI+EC G + +C N G++ C C P G T
Sbjct: 1 DIDECENG---GFCSGVCHNLPGTFECICGPDSALAGQIGT 38
Score = 34.0 bits (78), Expect = 0.001
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Query: 212 DVDECMNYPPICNNNADCINRPGTYQCQCKRGFSGDGFNC 251
D+DEC N + C N PGT++C C + G
Sbjct: 1 DIDECENG---GFCSGVCHNLPGTFECICGPDSALAGQIG 37
>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein
1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 39
Score = 36.6 bits (85), Expect = 1e-04
Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 4/40 (10%)
Query: 213 VDECMNYPPICNNNADCINRPGTYQCQCKRGFSGDGFNCE 252
V+EC++ P C N+A C+++ G +QC C G+ G +CE
Sbjct: 1 VNECVSNP--CQNDATCLDQIGEFQCICMPGYEGV--HCE 36
Score = 34.7 bits (80), Expect = 6e-04
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 115 INECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTG 148
+NEC ++ C +A C ++IG + C C PG+ G
Sbjct: 1 VNECV--SNPCQNDATCLDQIGEFQCICMPGYEG 32
>d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 43
Score = 36.4 bits (84), Expect = 2e-04
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 211 TDVDECMNYPPICNNNADCINRPGTYQCQCKRGF--SGDGFNCEE 253
TDV+EC++ + +C+N PG+Y C C F + C +
Sbjct: 1 TDVNECLDPTTCIS--GNCVNTPGSYICDCPPDFELNPTRVGCVD 43
Score = 35.6 bits (82), Expect = 3e-04
Identities = 16/44 (36%), Positives = 18/44 (40%), Gaps = 4/44 (9%)
Query: 114 DINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTGN--GHQCTE 155
D+NEC T C N GSY C C P F N C +
Sbjct: 2 DVNECLDPTTCIS--GNCVNTPGSYICDCPPDFELNPTRVGCVD 43
>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo
sapiens) [TaxId: 9606]}
Length = 39
Score = 35.1 bits (81), Expect = 4e-04
Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 4/39 (10%)
Query: 214 DECMNYPPICNNNADCINRPGTYQCQCKRGFSGDGFNCE 252
D+C P C N C + G Y C C GF G NCE
Sbjct: 1 DQCETSP--CQNQGKCKDGLGEYTCTCLEGFEGK--NCE 35
Score = 32.0 bits (73), Expect = 0.004
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 116 NECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTG 148
++C T C C + +G Y+C C GF G
Sbjct: 1 DQCE--TSPCQNQGKCKDGLGEYTCTCLEGFEG 31
>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein
1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 35
Score = 33.9 bits (78), Expect = 9e-04
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Query: 214 DECMNYPPICNNNADCINRPGTYQCQCKRGFSGDGFNCE 252
DEC + P C +N C+++ +QC+C GF+G C+
Sbjct: 1 DECASSP--CLHNGRCLDKINEFQCECPTGFTGH--LCQ 35
Score = 32.0 bits (73), Expect = 0.005
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 116 NECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTG 148
+EC + C N C ++I + C+C GFTG
Sbjct: 1 DECA--SSPCLHNGRCLDKINEFQCECPTGFTG 31
>d1nt0a3 g.3.11.1 (A:120-164) Mannose-binding protein associated
serine protease 2, MASP2 {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 45
Score = 34.1 bits (78), Expect = 0.001
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 115 INECNAGTDLCHK-NAMCFNEIGSYSCQCRPGFT--GNGHQCTEI 156
++EC + C N +G Y C CR G+ N H C+ +
Sbjct: 1 VDECRTSLGDSVPCDHYCHNYLGGYYCSCRVGYILHQNKHTCSAL 45
Score = 30.3 bits (68), Expect = 0.022
Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 3/42 (7%)
Query: 213 VDECMNYPPICNN-NADCINRPGTYQCQCKRGF--SGDGFNC 251
VDEC + C N G Y C C+ G+ + C
Sbjct: 1 VDECRTSLGDSVPCDHYCHNYLGGYYCSCRVGYILHQNKHTC 42
Score = 23.3 bits (50), Expect = 6.7
Identities = 8/31 (25%), Positives = 10/31 (32%)
Query: 167 CESDPRACNPPHSTCTNLTDYRTCNCDPGYQ 197
C + P C N C+C GY
Sbjct: 4 CRTSLGDSVPCDHYCHNYLGGYYCSCRVGYI 34
>d1szba2 g.3.11.1 (A:124-168) Mannose-binding protein associated
serine protease 2, MASP2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 45
Score = 33.7 bits (77), Expect = 0.001
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Query: 115 INECNAGTDLCHK-NAMCFNEIGSYSCQCRPGFT--GNGHQCTE 155
I+EC + C N +G + C CR G+ N C+E
Sbjct: 1 IDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRTCSE 44
Score = 32.2 bits (73), Expect = 0.005
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
Query: 213 VDECMNYPPICNN-NADCINRPGTYQCQCKRGF--SGDGFNCEE 253
+DEC P + C N G + C C+ G+ + C E
Sbjct: 1 IDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRTCSE 44
Score = 24.1 bits (52), Expect = 3.7
Identities = 8/31 (25%), Positives = 10/31 (32%)
Query: 167 CESDPRACNPPHSTCTNLTDYRTCNCDPGYQ 197
C+ P C N C+C GY
Sbjct: 4 CQVAPGEAPTCDHHCHNHLGGFYCSCRAGYV 34
>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 39
Score = 32.8 bits (75), Expect = 0.002
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
Query: 214 DECMNYPPICNNNADCINRPGTYQCQCKRGFSGDGFNCEE 253
C N C+ + +C+ Y C+C GFSG CE+
Sbjct: 2 AACTNTS--CSGHGECVETINNYTCKCDPGFSGL--KCEQ 37
Score = 30.5 bits (69), Expect = 0.018
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 125 CHKNAMCFNEIGSYSCQCRPGFTG 148
C + C I +Y+C+C PGF+G
Sbjct: 9 CSGHGECVETINNYTCKCDPGFSG 32
Score = 24.3 bits (53), Expect = 2.7
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 3/34 (8%)
Query: 164 TSPCESDPRACNPPHSTCTNLTDYRTCNCDPGYQ 197
T+ C + C H C + TC CDPG+
Sbjct: 1 TAACTNTS--C-SGHGECVETINNYTCKCDPGFS 31
>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 40
Score = 32.8 bits (75), Expect = 0.003
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 4/42 (9%)
Query: 214 DECMNYPPICNNNADCINRPGTYQCQCKRGFSGDGFNCEEGK 255
C + C+ +C+ G Y C C GF G CE +
Sbjct: 2 ASCQDMS--CSKQGECLETIGNYTCSCYPGFYGP--ECEYVR 39
Score = 30.5 bits (69), Expect = 0.017
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 125 CHKNAMCFNEIGSYSCQCRPGFTG 148
C K C IG+Y+C C PGF G
Sbjct: 9 CSKQGECLETIGNYTCSCYPGFYG 32
Score = 23.6 bits (51), Expect = 6.1
Identities = 9/34 (26%), Positives = 13/34 (38%), Gaps = 3/34 (8%)
Query: 164 TSPCESDPRACNPPHSTCTNLTDYRTCNCDPGYQ 197
T+ C+ C C TC+C PG+
Sbjct: 1 TASCQDMS--C-SKQGECLETIGNYTCSCYPGFY 31
>d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL) receptor,
different EGF domains {Human (Homo sapiens) [TaxId:
9606]}
Length = 41
Score = 32.4 bits (74), Expect = 0.004
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 5/44 (11%)
Query: 115 INECNAGTDLCHKNAMCFNEIGSYSCQCRPGFT--GNGHQCTEI 156
I+EC D + +C N G Y CQC GF + C +
Sbjct: 1 IDEC---QDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAV 41
Score = 31.6 bits (72), Expect = 0.006
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
Query: 213 VDECMNYPPICNNNADCINRPGTYQCQCKRGF--SGDGFNCE 252
+DEC + + C+N G Y+CQC+ GF C+
Sbjct: 1 IDECQDP---DTCSQLCVNLEGGYKCQCEEGFQLDPHTKACK 39
>d3bpse1 g.3.11.1 (E:293-332) Low density lipoprotein (LDL)
receptor, different EGF domains {Human (Homo sapiens)
[TaxId: 9606]}
Length = 40
Score = 29.7 bits (67), Expect = 0.029
Identities = 11/39 (28%), Positives = 14/39 (35%), Gaps = 3/39 (7%)
Query: 116 NECNAGTDLCHKNAMCFNEIGSYSCQCRPGFT-GNGHQC 153
NEC C +C + Y C C GF +C
Sbjct: 3 NECLDNNGGCS--HVCNDLKIGYECLCPDGFQLVAQRRC 39
Score = 29.7 bits (67), Expect = 0.031
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Query: 213 VDECMNYPPICNNNADCINRPGTYQCQCKRGFS-GDGFNCE 252
+EC++ C++ C + Y+C C GF CE
Sbjct: 2 TNECLDNNGGCSHV--CNDLKIGYECLCPDGFQLVAQRRCE 40
>d1haea_ g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 63
Score = 29.6 bits (66), Expect = 0.061
Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 9/49 (18%)
Query: 210 CTDVDECMNYPPICNNNADC-----INRPGTYQCQCKRGFSGDGFNCEE 253
E C N +C ++ P Y C+C+ GF+G C E
Sbjct: 3 LVKCAEKEKTF--CVNGGECFMVKDLSNPSRYLCKCQPGFTGA--RCTE 47
Score = 27.3 bits (60), Expect = 0.39
Identities = 12/40 (30%), Positives = 15/40 (37%), Gaps = 7/40 (17%)
Query: 114 DINECNAGTDLCHKNAMCF-----NEIGSYSCQCRPGFTG 148
E C CF + Y C+C+PGFTG
Sbjct: 5 KCAEKEK--TFCVNGGECFMVKDLSNPSRYLCKCQPGFTG 42
>d2p3ua1 g.3.11.1 (A:87-137) Factor X, N-terminal module {Human
(Homo sapiens) [TaxId: 9606]}
Length = 51
Score = 27.8 bits (62), Expect = 0.20
Identities = 10/29 (34%), Positives = 11/29 (37%), Gaps = 2/29 (6%)
Query: 130 MCFNEIGSYSCQCRPGFT--GNGHQCTEI 156
C E S C C G+T NG C
Sbjct: 13 FCHEEQNSVVCSCARGYTLADNGKACIPT 41
Score = 26.7 bits (59), Expect = 0.49
Identities = 7/31 (22%), Positives = 11/31 (35%), Gaps = 2/31 (6%)
Query: 229 CINRPGTYQCQCKRGF--SGDGFNCEEGKYC 257
C + C C RG+ + +G C
Sbjct: 14 CHEEQNSVVCSCARGYTLADNGKACIPTGPY 44
>d1nzia2 g.3.11.1 (A:118-159) Complement C1S component {Human (Homo
sapiens) [TaxId: 9606]}
Length = 42
Score = 27.5 bits (61), Expect = 0.22
Identities = 9/26 (34%), Positives = 11/26 (42%), Gaps = 2/26 (7%)
Query: 131 CFNEIGSYSCQCRPGFT--GNGHQCT 154
C N IG Y C C P + + C
Sbjct: 15 CNNFIGGYFCSCPPEYFLHDDMKNCG 40
Score = 26.0 bits (57), Expect = 0.66
Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 3/40 (7%)
Query: 214 DECMNYPPICNNNADCINRPGTYQCQCKRGF--SGDGFNC 251
+EC ++ + C N G Y C C + D NC
Sbjct: 1 NECTDFVD-VPCSHFCNNFIGGYFCSCPPEYFLHDDMKNC 39
>d1autl2 g.3.11.1 (L:97-146) Activated protein c (autoprothrombin
IIa) {Human (Homo sapiens) [TaxId: 9606]}
Length = 50
Score = 27.4 bits (61), Expect = 0.32
Identities = 9/29 (31%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
Query: 130 MCFNEIGSYSCQCRPGFT--GNGHQCTEI 156
C E+G C C PG+ + QC
Sbjct: 12 YCLEEVGWRRCSCAPGYKLGDDLLQCHPA 40
Score = 26.3 bits (58), Expect = 0.60
Identities = 7/27 (25%), Positives = 10/27 (37%), Gaps = 2/27 (7%)
Query: 229 CINRPGTYQCQCKRGF--SGDGFNCEE 253
C+ G +C C G+ D C
Sbjct: 13 CLEEVGWRRCSCAPGYKLGDDLLQCHP 39
>d1kigl_ g.3.11.1 (L:) Factor X, N-terminal module {Cow (Bos taurus)
[TaxId: 9913]}
Length = 51
Score = 27.1 bits (60), Expect = 0.33
Identities = 6/31 (19%), Positives = 10/31 (32%), Gaps = 2/31 (6%)
Query: 229 CINRPGTYQCQCKRGF--SGDGFNCEEGKYC 257
C +C C G+ D +C +
Sbjct: 12 CREERSEVRCSCAHGYVLGDDSKSCVSTERF 42
Score = 27.1 bits (60), Expect = 0.37
Identities = 6/29 (20%), Positives = 8/29 (27%), Gaps = 2/29 (6%)
Query: 130 MCFNEIGSYSCQCRPGFT--GNGHQCTEI 156
C E C C G+ + C
Sbjct: 11 FCREERSEVRCSCAHGYVLGDDSKSCVST 39
>d1ijqa2 g.3.11.1 (A:643-692) Low density lipoprotein (LDL)
receptor, different EGF domains {Human (Homo sapiens)
[TaxId: 9606]}
Length = 50
Score = 26.8 bits (59), Expect = 0.54
Identities = 9/48 (18%), Positives = 13/48 (27%), Gaps = 9/48 (18%)
Query: 115 INECNAGT-------DLCHKNAMCFNEIGSYSCQCRPGFT--GNGHQC 153
+N C T LC ++C C G + C
Sbjct: 1 VNWCERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLARDMRSC 48
Score = 23.7 bits (51), Expect = 5.8
Identities = 6/32 (18%), Positives = 10/32 (31%), Gaps = 2/32 (6%)
Query: 222 ICNNNADCINRPGTYQCQCKRGF--SGDGFNC 251
+C + C C G + D +C
Sbjct: 17 LCLPAPQINPHSPKFTCACPDGMLLARDMRSC 48
>d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 53
Score = 26.0 bits (57), Expect = 0.98
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 4/36 (11%)
Query: 219 YPPICNNNADCINRPG--TYQCQCKRGFSGDGFNCE 252
Y C N C++ +Y C C G+SGD C+
Sbjct: 10 YDGYCLNGGVCMHIESLDSYTCNCVIGYSGD--RCQ 43
Score = 24.8 bits (54), Expect = 2.4
Identities = 8/26 (30%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 125 CHKNAMCFN--EIGSYSCQCRPGFTG 148
C +C + + SY+C C G++G
Sbjct: 14 CLNGGVCMHIESLDSYTCNCVIGYSG 39
>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin
IIa) {Human (Homo sapiens) [TaxId: 9606]}
Length = 48
Score = 25.5 bits (56), Expect = 1.1
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 114 DINECNAGTDLCHKNAMCFNEIGSYSCQCRPGFTG 148
+ C + C + C + IGS+SC CR G+ G
Sbjct: 7 LEHPCASL---CCGHGTCIDGIGSFSCDCRSGWEG 38
Score = 24.8 bits (54), Expect = 2.1
Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 5/43 (11%)
Query: 211 TDVDECMNYPPICNNNADCINRPGTYQCQCKRGFSGDGFNCEE 253
C + + CI+ G++ C C+ G+ G C+
Sbjct: 6 PLEHPCASLC---CGHGTCIDGIGSFSCDCRSGWEGR--FCQR 43
Score = 24.8 bits (54), Expect = 2.7
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 4/34 (11%)
Query: 163 PTSPCESDPRACNPPHSTCTNLTDYRTCNCDPGY 196
PC S C H TC + +C+C G+
Sbjct: 7 LEHPCASLC--CG--HGTCIDGIGSFSCDCRSGW 36
>d3euga_ c.18.1.1 (A:) Uracil-DNA glycosylase {Escherichia coli
[TaxId: 562]}
Length = 225
Score = 27.7 bits (61), Expect = 1.4
Identities = 7/68 (10%), Positives = 16/68 (23%), Gaps = 2/68 (2%)
Query: 86 DDKPTCICNRGFQQLYSEDRLQDDFGCFDINECNAGTDLCHKNAMCFNEIGSYSCQCRPG 145
+P +Y E L++ F + + N + +
Sbjct: 74 SVRPGIAIPPSLLNMYKE--LENTIPGFTRPNHGYLESWARQGVLLLNTVLTVRAGQAHS 131
Query: 146 FTGNGHQC 153
G +
Sbjct: 132 HASLGWET 139
>d1nqlb_ g.3.11.1 (B:) Epidermal growth factor, EGF {Human (Homo
sapiens) [TaxId: 9606]}
Length = 48
Score = 24.8 bits (54), Expect = 2.3
Identities = 8/44 (18%), Positives = 17/44 (38%), Gaps = 6/44 (13%)
Query: 211 TDVDECMNYPPICNNNADCINRPG--TYQCQCKRGFSGDGFNCE 252
++ + C ++ C+ Y C C G+ G+ C+
Sbjct: 2 SECPLSHDGY--CLHDGVCMYIEALDKYACNCVVGYIGE--RCQ 41
Score = 23.7 bits (51), Expect = 6.2
Identities = 7/26 (26%), Positives = 12/26 (46%), Gaps = 2/26 (7%)
Query: 125 CHKNAMCFN--EIGSYSCQCRPGFTG 148
C + +C + Y+C C G+ G
Sbjct: 12 CLHDGVCMYIEALDKYACNCVVGYIG 37
>d1rrka1 b.47.1.2 (A:453-739) Factor B {Human (Homo sapiens) [TaxId:
9606]}
Length = 287
Score = 26.2 bits (56), Expect = 5.5
Identities = 26/202 (12%), Positives = 51/202 (25%), Gaps = 16/202 (7%)
Query: 66 VNDDPCKNFFCVANSSCIVEDDKPTCICNRGFQQLYSEDRLQDDFGCFDI---NECNAGT 122
D ++ V+ + + + + + ++ +F +D+ N
Sbjct: 51 FTVDDKEHSIKVSVGGEKRDLEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLK 110
Query: 123 DLCHKNAMCF-NEIGSYSCQCRPGFTGNGHQCTEITVPQTGPTSPCESDPRACNPPHSTC 181
+C G+ P T Q E+ Q + +
Sbjct: 111 YGQTIRPICLPCTEGTTRALRLPPTTTCQQQKEELLPAQDIKALFVSEEEKKLTRKEVYI 170
Query: 182 TNLTDYRTCNCDPGYQKDYLDDRRVAFVCTDVDECMNYPPICNNNADCINRPGTYQCQCK 241
N +C D Y Y + ++ V T C
Sbjct: 171 KNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLC------------TGGVSPYADPNTC 218
Query: 242 RGFSGDGFNCEEGKYCLVVGIT 263
RG SG + + VG+
Sbjct: 219 RGDSGGPLIVHKRSRFIQVGVI 240
>d1tmoa2 c.81.1.1 (A:5-631) Trimethylamine N-oxide reductase
{Shewanella massilia [TaxId: 76854]}
Length = 627
Score = 26.2 bits (56), Expect = 6.0
Identities = 5/23 (21%), Positives = 9/23 (39%), Gaps = 1/23 (4%)
Query: 85 EDDKPTCICNRGF-QQLYSEDRL 106
+ DK G +Y+ R+
Sbjct: 31 DLDKYPTDMINGIRGMVYNPSRV 53
>d1q4ga2 g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EGF-like
module {Sheep (Ovis aries) [TaxId: 9940]}
Length = 42
Score = 23.6 bits (51), Expect = 6.1
Identities = 9/36 (25%), Positives = 14/36 (38%), Gaps = 4/36 (11%)
Query: 115 INECNAGTDLCHKNAMCFNE-IGSYSCQCRP-GFTG 148
+N C C +C + Y C C G++G
Sbjct: 2 VNPCC--YYPCQHQGICVRFGLDRYQCDCTRTGYSG 35
>d1ioxa_ g.3.11.1 (A:) Betacellulin-2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 50
Score = 23.6 bits (51), Expect = 6.7
Identities = 8/28 (28%), Positives = 10/28 (35%), Gaps = 1/28 (3%)
Query: 122 TDLCHKNAMCF-NEIGSYSCQCRPGFTG 148
C K F + SC C G+ G
Sbjct: 13 KHYCIKGRCRFVVAEQTPSCVCDEGYIG 40
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.138 0.458
Gapped
Lambda K H
0.267 0.0383 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,149,784
Number of extensions: 59762
Number of successful extensions: 402
Number of sequences better than 10.0: 1
Number of HSP's gapped: 360
Number of HSP's successfully gapped: 183
Length of query: 286
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 202
Effective length of database: 1,254,276
Effective search space: 253363752
Effective search space used: 253363752
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.7 bits)