BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5751
(232 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1NPE|A Chain A, Crystal Structure Of Nidogen/laminin Complex
Length = 267
Score = 179 bits (455), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 94/234 (40%), Positives = 135/234 (57%), Gaps = 9/234 (3%)
Query: 1 MLIGITVDCVEGQVYYSSVADKSSIKRAHLDGKNVEDVITTNIRSPEGLTFDWVNRVLYW 60
++IG+ DCV+ VY++ +++ SI RA L G +I ++ SPEG+ D + R ++W
Sbjct: 37 VIIGLAFDCVDKVVYWTDISE-PSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFW 95
Query: 61 TDSQMDTISMANLNDDQPKVIVSKDLVNPRGIVVHPYYRKLFWSDWNRSGPKIEWSNLDG 120
TDSQ+D I +A ++ Q +V+ LVNPRGIV P L+W+DWNR PKIE S++DG
Sbjct: 96 TDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG 155
Query: 121 TDREIFLKAADLKLPNSLAVDFRTDELCWVDADSKSLECMTIRNRVRRKVYSNCTYPFGL 180
T+R I L +L LPN L D + +LCWVDA + EC+ RRKV YPF +
Sbjct: 156 TNRRI-LAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAV 214
Query: 181 SITDEKYYWTDWKTNRIESANKEGERAPSIALDMMG---TTYMYGIAAVPSSCP 231
+ + Y+TDWKTN + + + A S +D T +YGI S CP
Sbjct: 215 TSYGKNLYYTDWKTNSVIAM----DLAISKEMDTFHPHKQTRLYGITIALSQCP 264
>pdb|3V65|B Chain B, Crystal Structure Of Agrin And Lrp4 Complex
pdb|3V65|D Chain D, Crystal Structure Of Agrin And Lrp4 Complex
Length = 386
Score = 140 bits (353), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 77/192 (40%), Positives = 112/192 (58%), Gaps = 8/192 (4%)
Query: 14 VYYSSVADKSSIKRAHLDGKNVEDVITTNIRSPEGLTFDWVNRVLYWTDSQMDTISMANL 73
V++S V I RA+L+G NVE+V++T + SP GL DWV+ LYWTDS I +ANL
Sbjct: 130 VFWSDVT-LDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANL 188
Query: 74 NDDQPKVIVSKDLVNPRGIVVHPYYRKLFWSDWNRSGPKIEWSNLDGTDREIFLKAADLK 133
+ KV++ + L PR I +HP ++W+DW + P+IE S++DG+ R I AD
Sbjct: 189 DGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNT-PRIEASSMDGSGRRII---ADTH 244
Query: 134 L--PNSLAVDFRTDELCWVDADSKSLECMTIRNRVRRKVYSN-CTYPFGLSITDEKYYWT 190
L PN L +D+ + WVDA +E + R+ V S +PF +++ ++ YWT
Sbjct: 245 LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVFEDSLYWT 304
Query: 191 DWKTNRIESANK 202
DW T I SANK
Sbjct: 305 DWHTKSINSANK 316
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 56/103 (54%), Gaps = 2/103 (1%)
Query: 5 ITVDCVEGQVYYSSVADKSSIKRAHLDGKNVEDVITTNIRSPEGLTFDWVNRVLYWTDSQ 64
I + +EG +Y++ + I+ + +DG + T++ P GLT D+ R +YW D++
Sbjct: 207 IALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAK 266
Query: 65 MDTISMANLNDDQPKVIVSKDLVNPRGIVVHPYYRKLFWSDWN 107
I ANL+ K ++S+ L +P I V + L+W+DW+
Sbjct: 267 HHVIERANLDGSHRKAVISQGLPHPFAITV--FEDSLYWTDWH 307
>pdb|3V64|C Chain C, Crystal Structure Of Agrin And Lrp4
pdb|3V64|D Chain D, Crystal Structure Of Agrin And Lrp4
Length = 349
Score = 140 bits (353), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 77/192 (40%), Positives = 112/192 (58%), Gaps = 8/192 (4%)
Query: 14 VYYSSVADKSSIKRAHLDGKNVEDVITTNIRSPEGLTFDWVNRVLYWTDSQMDTISMANL 73
V++S V I RA+L+G NVE+V++T + SP GL DWV+ LYWTDS I +ANL
Sbjct: 87 VFWSDVT-LDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANL 145
Query: 74 NDDQPKVIVSKDLVNPRGIVVHPYYRKLFWSDWNRSGPKIEWSNLDGTDREIFLKAADLK 133
+ KV++ + L PR I +HP ++W+DW + P+IE S++DG+ R I AD
Sbjct: 146 DGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNT-PRIEASSMDGSGRRII---ADTH 201
Query: 134 L--PNSLAVDFRTDELCWVDADSKSLECMTIRNRVRRKVYSN-CTYPFGLSITDEKYYWT 190
L PN L +D+ + WVDA +E + R+ V S +PF +++ ++ YWT
Sbjct: 202 LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVFEDSLYWT 261
Query: 191 DWKTNRIESANK 202
DW T I SANK
Sbjct: 262 DWHTKSINSANK 273
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 56/104 (53%), Gaps = 2/104 (1%)
Query: 4 GITVDCVEGQVYYSSVADKSSIKRAHLDGKNVEDVITTNIRSPEGLTFDWVNRVLYWTDS 63
I + +EG +Y++ + I+ + +DG + T++ P GLT D+ R +YW D+
Sbjct: 163 AIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDA 222
Query: 64 QMDTISMANLNDDQPKVIVSKDLVNPRGIVVHPYYRKLFWSDWN 107
+ I ANL+ K ++S+ L +P I V + L+W+DW+
Sbjct: 223 KHHVIERANLDGSHRKAVISQGLPHPFAITV--FEDSLYWTDWH 264
>pdb|4DG6|A Chain A, Crystal Structure Of Domains 1 And 2 Of Lrp6
Length = 616
Score = 137 bits (345), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 80/218 (36%), Positives = 120/218 (55%), Gaps = 7/218 (3%)
Query: 3 IGITVDCVEGQVYYSSVADKSSIKRAHLDGKNVEDVITTNIRSPEGLTFDWVNRVLYWTD 62
I I D VEG +Y++ + +I+R+ +DG + V+T I P+G+ DWV R LYWTD
Sbjct: 344 IAIDYDPVEGYIYWTD-DEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTD 402
Query: 63 SQMDTISMANLNDDQPKVIVSKDLVNPRGIVVHPYYRKLFWSDWNRSGPKIEWSNLDGTD 122
+ D I + LN K+++S+DL PR IV+ P ++W+DW PKIE + LDG+D
Sbjct: 403 TGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEI-PKIERAALDGSD 461
Query: 123 REIFLKAADLKLPNSLAVDFRTDELCWVDADSKSLECMTIRNRVRR-KVYSNCTYPFGLS 181
R + + + L PN LA+D+ ++ W DA + +E M RR V + FG +
Sbjct: 462 RVVLVNTS-LGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVEDKIPHIFGFT 520
Query: 182 ITDEKYYWTDWKTNRIESANKE-GERAPSI--ALDMMG 216
+ + YWTDW+ IE +K ER I D+MG
Sbjct: 521 LLGDYVYWTDWQRRSIERVHKRSAEREVIIDQLPDLMG 558
Score = 120 bits (300), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 118/208 (56%), Gaps = 6/208 (2%)
Query: 11 EGQVYYSSVADKSSIKRAHLDG-KNVEDVITTNIRSPEGLTFDWVNRVLYWTDSQMDTIS 69
G +Y+S V++++ IKR + ++V++V+ + + SP+GL DW+ LYWTDS+ + I
Sbjct: 43 HGLIYWSDVSEEA-IKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIE 101
Query: 70 MANLNDDQPKVIVSKDLVNPRGIVVHPYYRKLFWSDWNRSGPKIEWSNLDGTDREIFLKA 129
++NL+ KV+ ++L PR I + P ++W+DW PKIE + +DG+ R I +
Sbjct: 102 VSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEV-PKIERAGMDGSSRFIIIN- 159
Query: 130 ADLKLPNSLAVDFRTDELCWVDADSKSLECMTIRNRVRRKVY-SNCTYPFGLSITDEKYY 188
+++ PN L +D+ +L W DA + + R+ V + +PF L++ ++ Y
Sbjct: 160 SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILY 219
Query: 189 WTDWKTNRIESANK-EGERAPSIALDMM 215
WTDW T+ I + NK GE I D+
Sbjct: 220 WTDWSTHSILACNKYTGEGLREIHSDIF 247
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 57/104 (54%), Gaps = 2/104 (1%)
Query: 4 GITVDCVEGQVYYSSVADKSSIKRAHLDGKNVEDVITTNIRSPEGLTFDWVNRVLYWTDS 63
I +D G +Y++ + I+RA +DG + +I + I P GLT D+ + LYW D+
Sbjct: 123 AIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADA 182
Query: 64 QMDTISMANLNDDQPKVIVSKDLVNPRGIVVHPYYRKLFWSDWN 107
+++ I +NL+ + +V L +P + + + L+W+DW+
Sbjct: 183 KLNFIHKSNLDGTNRQAVVKGSLPHPFALTL--FEDILYWTDWS 224
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 47/97 (48%), Gaps = 3/97 (3%)
Query: 4 GITVDCVEGQVYYSSVADKSSIKRAHLDGKNVEDVITTNIRSPEGLTFDWVNRVLYWTDS 63
G+T+D E ++Y++ A + I +++LDG N + V+ ++ P LT +LYWTD
Sbjct: 167 GLTLDYEEQKLYWAD-AKLNFIHKSNLDGTNRQAVVKGSLPHPFALTL--FEDILYWTDW 223
Query: 64 QMDTISMANLNDDQPKVIVSKDLVNPRGIVVHPYYRK 100
+I N + + D+ +P I R+
Sbjct: 224 STHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQ 260
Score = 34.7 bits (78), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
Query: 134 LPNSLAVDFRTDE--LCWVDADSKSLECMTIR--NRVRRKVYSNCTYPFGLSI--TDEKY 187
L ++ AVDF + W D ++++ V+ V S P GL+ EK
Sbjct: 31 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKL 90
Query: 188 YWTDWKTNRIESANKEG 204
YWTD +TNRIE +N +G
Sbjct: 91 YWTDSETNRIEVSNLDG 107
Score = 31.6 bits (70), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 5/94 (5%)
Query: 4 GITVDCVEGQVYYSSVADKSSIKRAHLDGKNVEDVITTNIRSPEGLTFDWVNRVLYWTDS 63
G+ +D EG++Y+ A I+ + DG ++ I P F + +YWTD
Sbjct: 475 GLALDYDEGKIYWGD-AKTDKIEVMNTDGTGRRVLVEDKI--PHIFGFTLLGDYVYWTDW 531
Query: 64 QMDTISMANLNDDQPKVIVSK--DLVNPRGIVVH 95
Q +I + + +VI+ + DL+ + VH
Sbjct: 532 QRRSIERVHKRSAEREVIIDQLPDLMGLKATNVH 565
>pdb|3S94|A Chain A, Crystal Structure Of Lrp6-E1e2
pdb|3S94|B Chain B, Crystal Structure Of Lrp6-E1e2
Length = 619
Score = 137 bits (344), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 80/218 (36%), Positives = 120/218 (55%), Gaps = 7/218 (3%)
Query: 3 IGITVDCVEGQVYYSSVADKSSIKRAHLDGKNVEDVITTNIRSPEGLTFDWVNRVLYWTD 62
I I D VEG +Y++ + +I+R+ +DG + V+T I P+G+ DWV R LYWTD
Sbjct: 352 IAIDYDPVEGYIYWTD-DEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTD 410
Query: 63 SQMDTISMANLNDDQPKVIVSKDLVNPRGIVVHPYYRKLFWSDWNRSGPKIEWSNLDGTD 122
+ D I + LN K+++S+DL PR IV+ P ++W+DW PKIE + LDG+D
Sbjct: 411 TGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEI-PKIERAALDGSD 469
Query: 123 REIFLKAADLKLPNSLAVDFRTDELCWVDADSKSLECMTIRNRVRR-KVYSNCTYPFGLS 181
R + + + L PN LA+D+ ++ W DA + +E M RR V + FG +
Sbjct: 470 RVVLVNTS-LGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVEDKIPHIFGFT 528
Query: 182 ITDEKYYWTDWKTNRIESANKE-GERAPSI--ALDMMG 216
+ + YWTDW+ IE +K ER I D+MG
Sbjct: 529 LLGDYVYWTDWQRRSIERVHKRSAEREVIIDQLPDLMG 566
Score = 119 bits (299), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 118/208 (56%), Gaps = 6/208 (2%)
Query: 11 EGQVYYSSVADKSSIKRAHLDG-KNVEDVITTNIRSPEGLTFDWVNRVLYWTDSQMDTIS 69
G +Y+S V++++ IKR + ++V++V+ + + SP+GL DW+ LYWTDS+ + I
Sbjct: 51 HGLIYWSDVSEEA-IKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIE 109
Query: 70 MANLNDDQPKVIVSKDLVNPRGIVVHPYYRKLFWSDWNRSGPKIEWSNLDGTDREIFLKA 129
++NL+ KV+ ++L PR I + P ++W+DW PKIE + +DG+ R I +
Sbjct: 110 VSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEV-PKIERAGMDGSSRFIIIN- 167
Query: 130 ADLKLPNSLAVDFRTDELCWVDADSKSLECMTIRNRVRRKVY-SNCTYPFGLSITDEKYY 188
+++ PN L +D+ +L W DA + + R+ V + +PF L++ ++ Y
Sbjct: 168 SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILY 227
Query: 189 WTDWKTNRIESANK-EGERAPSIALDMM 215
WTDW T+ I + NK GE I D+
Sbjct: 228 WTDWSTHSILACNKYTGEGLREIHSDIF 255
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 57/104 (54%), Gaps = 2/104 (1%)
Query: 4 GITVDCVEGQVYYSSVADKSSIKRAHLDGKNVEDVITTNIRSPEGLTFDWVNRVLYWTDS 63
I +D G +Y++ + I+RA +DG + +I + I P GLT D+ + LYW D+
Sbjct: 131 AIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADA 190
Query: 64 QMDTISMANLNDDQPKVIVSKDLVNPRGIVVHPYYRKLFWSDWN 107
+++ I +NL+ + +V L +P + + + L+W+DW+
Sbjct: 191 KLNFIHKSNLDGTNRQAVVKGSLPHPFALTL--FEDILYWTDWS 232
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 47/97 (48%), Gaps = 3/97 (3%)
Query: 4 GITVDCVEGQVYYSSVADKSSIKRAHLDGKNVEDVITTNIRSPEGLTFDWVNRVLYWTDS 63
G+T+D E ++Y++ A + I +++LDG N + V+ ++ P LT +LYWTD
Sbjct: 175 GLTLDYEEQKLYWAD-AKLNFIHKSNLDGTNRQAVVKGSLPHPFALTL--FEDILYWTDW 231
Query: 64 QMDTISMANLNDDQPKVIVSKDLVNPRGIVVHPYYRK 100
+I N + + D+ +P I R+
Sbjct: 232 STHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQ 268
Score = 34.7 bits (78), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
Query: 134 LPNSLAVDFRTDE--LCWVDADSKSLECMTIR--NRVRRKVYSNCTYPFGLSI--TDEKY 187
L ++ AVDF + W D ++++ V+ V S P GL+ EK
Sbjct: 39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKL 98
Query: 188 YWTDWKTNRIESANKEG 204
YWTD +TNRIE +N +G
Sbjct: 99 YWTDSETNRIEVSNLDG 115
Score = 31.6 bits (70), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 5/94 (5%)
Query: 4 GITVDCVEGQVYYSSVADKSSIKRAHLDGKNVEDVITTNIRSPEGLTFDWVNRVLYWTDS 63
G+ +D EG++Y+ A I+ + DG ++ I P F + +YWTD
Sbjct: 483 GLALDYDEGKIYWGD-AKTDKIEVMNTDGTGRRVLVEDKI--PHIFGFTLLGDYVYWTDW 539
Query: 64 QMDTISMANLNDDQPKVIVSK--DLVNPRGIVVH 95
Q +I + + +VI+ + DL+ + VH
Sbjct: 540 QRRSIERVHKRSAEREVIIDQLPDLMGLKATNVH 573
>pdb|3SOQ|A Chain A, The Structure Of The First Ywtd Beta Propeller Domain Of
Lrp6 In Complex With A Dkk1 Peptide
pdb|3SOV|A Chain A, The Structure Of A Beta Propeller Domain In Complex With
Peptide S
Length = 318
Score = 120 bits (301), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 118/208 (56%), Gaps = 6/208 (2%)
Query: 11 EGQVYYSSVADKSSIKRAHLDG-KNVEDVITTNIRSPEGLTFDWVNRVLYWTDSQMDTIS 69
G +Y+S V++++ IKR + ++V++V+ + + SP+GL DW+ LYWTDS+ + I
Sbjct: 46 HGLIYWSDVSEEA-IKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIE 104
Query: 70 MANLNDDQPKVIVSKDLVNPRGIVVHPYYRKLFWSDWNRSGPKIEWSNLDGTDREIFLKA 129
++NL+ KV+ ++L PR I + P ++W+DW PKIE + +DG+ R I +
Sbjct: 105 VSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEV-PKIERAGMDGSSRFIIIN- 162
Query: 130 ADLKLPNSLAVDFRTDELCWVDADSKSLECMTIRNRVRRKVY-SNCTYPFGLSITDEKYY 188
+++ PN L +D+ +L W DA + + R+ V + +PF L++ ++ Y
Sbjct: 163 SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILY 222
Query: 189 WTDWKTNRIESANK-EGERAPSIALDMM 215
WTDW T+ I + NK GE I D+
Sbjct: 223 WTDWSTHSILACNKYTGEGLREIHSDIF 250
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 57/104 (54%), Gaps = 2/104 (1%)
Query: 4 GITVDCVEGQVYYSSVADKSSIKRAHLDGKNVEDVITTNIRSPEGLTFDWVNRVLYWTDS 63
I +D G +Y++ + I+RA +DG + +I + I P GLT D+ + LYW D+
Sbjct: 126 AIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADA 185
Query: 64 QMDTISMANLNDDQPKVIVSKDLVNPRGIVVHPYYRKLFWSDWN 107
+++ I +NL+ + +V L +P + + + L+W+DW+
Sbjct: 186 KLNFIHKSNLDGTNRQAVVKGSLPHPFALTL--FEDILYWTDWS 227
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 47/97 (48%), Gaps = 3/97 (3%)
Query: 4 GITVDCVEGQVYYSSVADKSSIKRAHLDGKNVEDVITTNIRSPEGLTFDWVNRVLYWTDS 63
G+T+D E ++Y++ A + I +++LDG N + V+ ++ P LT +LYWTD
Sbjct: 170 GLTLDYEEQKLYWAD-AKLNFIHKSNLDGTNRQAVVKGSLPHPFALTL--FEDILYWTDW 226
Query: 64 QMDTISMANLNDDQPKVIVSKDLVNPRGIVVHPYYRK 100
+I N + + D+ +P I R+
Sbjct: 227 STHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQ 263
Score = 34.3 bits (77), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
Query: 134 LPNSLAVDFRTDE--LCWVDADSKSLECMTIR--NRVRRKVYSNCTYPFGLSI--TDEKY 187
L ++ AVDF + W D ++++ V+ V S P GL+ EK
Sbjct: 34 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKL 93
Query: 188 YWTDWKTNRIESANKEG 204
YWTD +TNRIE +N +G
Sbjct: 94 YWTDSETNRIEVSNLDG 110
>pdb|3SOB|B Chain B, The Structure Of The First Ywtd Beta Propeller Domain Of
Lrp6 In Complex With A Fab
Length = 316
Score = 120 bits (301), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 118/208 (56%), Gaps = 6/208 (2%)
Query: 11 EGQVYYSSVADKSSIKRAHLDG-KNVEDVITTNIRSPEGLTFDWVNRVLYWTDSQMDTIS 69
G +Y+S V++++ IKR + ++V++V+ + + SP+GL DW+ LYWTDS+ + I
Sbjct: 43 HGLIYWSDVSEEA-IKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIE 101
Query: 70 MANLNDDQPKVIVSKDLVNPRGIVVHPYYRKLFWSDWNRSGPKIEWSNLDGTDREIFLKA 129
++NL+ KV+ ++L PR I + P ++W+DW PKIE + +DG+ R I +
Sbjct: 102 VSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEV-PKIERAGMDGSSRFIIIN- 159
Query: 130 ADLKLPNSLAVDFRTDELCWVDADSKSLECMTIRNRVRRKVY-SNCTYPFGLSITDEKYY 188
+++ PN L +D+ +L W DA + + R+ V + +PF L++ ++ Y
Sbjct: 160 SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFEDILY 219
Query: 189 WTDWKTNRIESANK-EGERAPSIALDMM 215
WTDW T+ I + NK GE I D+
Sbjct: 220 WTDWSTHSILACNKYTGEGLREIHSDIF 247
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 57/104 (54%), Gaps = 2/104 (1%)
Query: 4 GITVDCVEGQVYYSSVADKSSIKRAHLDGKNVEDVITTNIRSPEGLTFDWVNRVLYWTDS 63
I +D G +Y++ + I+RA +DG + +I + I P GLT D+ + LYW D+
Sbjct: 123 AIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADA 182
Query: 64 QMDTISMANLNDDQPKVIVSKDLVNPRGIVVHPYYRKLFWSDWN 107
+++ I +NL+ + +V L +P + + + L+W+DW+
Sbjct: 183 KLNFIHKSNLDGTNRQAVVKGSLPHPFALTL--FEDILYWTDWS 224
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 47/97 (48%), Gaps = 3/97 (3%)
Query: 4 GITVDCVEGQVYYSSVADKSSIKRAHLDGKNVEDVITTNIRSPEGLTFDWVNRVLYWTDS 63
G+T+D E ++Y++ A + I +++LDG N + V+ ++ P LT +LYWTD
Sbjct: 167 GLTLDYEEQKLYWAD-AKLNFIHKSNLDGTNRQAVVKGSLPHPFALTL--FEDILYWTDW 223
Query: 64 QMDTISMANLNDDQPKVIVSKDLVNPRGIVVHPYYRK 100
+I N + + D+ +P I R+
Sbjct: 224 STHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQ 260
Score = 34.3 bits (77), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
Query: 134 LPNSLAVDFRTDE--LCWVDADSKSLECMTIR--NRVRRKVYSNCTYPFGLSI--TDEKY 187
L ++ AVDF + W D ++++ V+ V S P GL+ EK
Sbjct: 31 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKL 90
Query: 188 YWTDWKTNRIESANKEG 204
YWTD +TNRIE +N +G
Sbjct: 91 YWTDSETNRIEVSNLDG 107
>pdb|3S2K|A Chain A, Structural Basis Of Wnt Signaling Inhibition By Dickkopf
Binding To Lrp56.
pdb|3S2K|B Chain B, Structural Basis Of Wnt Signaling Inhibition By Dickkopf
Binding To Lrp56
Length = 629
Score = 117 bits (293), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 108/199 (54%), Gaps = 4/199 (2%)
Query: 4 GITVDCVEGQVYYSSVADKSSIKRAHLDGKNVEDVITTNIRSPEGLTFDWVNRVLYWTDS 63
+ D + ++Y++ ++ K+ I RA ++G +E V+ + PEG+ DW+ + LYW D+
Sbjct: 39 ALDFDVTDNRIYWTDISLKT-ISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADT 97
Query: 64 QMDTISMANLNDDQPKVIVSKDLVNPRGIVVHPYYRKLFWSDWNRSGPKIEWSNLDGTDR 123
+ I ++ L+ +V+V KDL +PR + + P ++W++W PKI+ + +DG++R
Sbjct: 98 GTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWG-GKPKIDRAAMDGSER 156
Query: 124 EIFLKAADLKLPNSLAVDFRTDELCWVDADSKSLECMTIRNRVRRKVYSNCTYPFGLSIT 183
+ ++ N L +D+ L W D D+ +E + R + + +PFGL+
Sbjct: 157 TTLV--PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIADDLPHPFGLTQY 214
Query: 184 DEKYYWTDWKTNRIESANK 202
+ YWTDW IE ANK
Sbjct: 215 QDYIYWTDWSRRSIERANK 233
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 105/211 (49%), Gaps = 9/211 (4%)
Query: 4 GITVDCVEGQVYYSSVADKSSIKRAHLDGKNVEDVITTNIRS------PEGLTFDWVNRV 57
I D ++ Q+Y+ + ++ I++A DG V+ +++ S P L+ D +R
Sbjct: 342 AIDYDPLDKQLYWID-SRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRY 400
Query: 58 LYWTDSQMDTISMANLNDDQPKVIVSKDLVNPRGIVVHPYYRKLFWSDWNRSGPKIEWSN 117
+YWT + I++ L+ V++ + PR IVV+P +++++ PKIE +
Sbjct: 401 IYWTCEATNVINVTRLDGRSVGVVLKGEQDRPRAIVVNPEKGYMYFTNLQERSPKIERAA 460
Query: 118 LDGTDREIFLKAADLKLPNSLAVDFRTDELCWVDADSKSLECMTIRNRVRRKVY-SNCTY 176
LDGT+RE+ + L P +LA+D R +L W D+D + +E + R + SN
Sbjct: 461 LDGTEREVLFFSG-LSKPIALALDSRLGKLFWADSDLRRIESSDLSGANRIVLEDSNILQ 519
Query: 177 PFGLSITDEKYYWTDWKTNRIESANKEGERA 207
P GL++ + YW D + IE + G
Sbjct: 520 PVGLTVFENWLYWIDKQQQMIEKIDMTGREG 550
>pdb|4A0P|A Chain A, Crystal Structure Of Lrp6p3e3p4e4
Length = 628
Score = 117 bits (293), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 108/199 (54%), Gaps = 4/199 (2%)
Query: 4 GITVDCVEGQVYYSSVADKSSIKRAHLDGKNVEDVITTNIRSPEGLTFDWVNRVLYWTDS 63
+ D + ++Y++ ++ K+ I RA ++G +E V+ + PEG+ DW+ + LYW D+
Sbjct: 41 ALDFDVTDNRIYWTDISLKT-ISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADT 99
Query: 64 QMDTISMANLNDDQPKVIVSKDLVNPRGIVVHPYYRKLFWSDWNRSGPKIEWSNLDGTDR 123
+ I ++ L+ +V+V KDL +PR + + P ++W++W PKI+ + +DG++R
Sbjct: 100 GTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWG-GKPKIDRAAMDGSER 158
Query: 124 EIFLKAADLKLPNSLAVDFRTDELCWVDADSKSLECMTIRNRVRRKVYSNCTYPFGLSIT 183
+ ++ N L +D+ L W D D+ +E + R + + +PFGL+
Sbjct: 159 TTLV--PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIADDLPHPFGLTQY 216
Query: 184 DEKYYWTDWKTNRIESANK 202
+ YWTDW IE ANK
Sbjct: 217 QDYIYWTDWSRRSIERANK 235
Score = 87.8 bits (216), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 108/212 (50%), Gaps = 11/212 (5%)
Query: 4 GITVDCVEGQVYYSSVADKSSIKRAHLDGKNVEDVITTNIRS------PEGLTFDWVNRV 57
I D ++ Q+Y+ + ++ I++A DG V+ +++ S P L+ D +R
Sbjct: 344 AIDYDPLDKQLYWID-SRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRY 402
Query: 58 LYWTDSQMDTISMANLNDDQPKVIVSKDLVNPRGIVVHPYYRKLFWSDWNRSGPKIEWSN 117
+YWT + I++ L+ V++ + PR +VV+P +++++ PKIE +
Sbjct: 403 IYWTCEATNVINVTRLDGRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAA 462
Query: 118 LDGTDREIFLKAADLKLPNSLAVDFRTDELCWVDADSKSLEC--MTIRNRVRRKVYSNCT 175
LDGT+RE+ + L P +LA+D R +L W D+D + +E ++ NR+ + SN
Sbjct: 463 LDGTEREVLFFSG-LSKPIALALDSRLGKLFWADSDLRRIESSDLSGANRIVLE-DSNIL 520
Query: 176 YPFGLSITDEKYYWTDWKTNRIESANKEGERA 207
P GL++ + YW D + IE + G
Sbjct: 521 QPVGLTVFENWLYWIDKQQQMIEKIDMTGREG 552
>pdb|3S8V|A Chain A, Crystal Structure Of Lrp6-Dkk1 Complex
pdb|3S8V|B Chain B, Crystal Structure Of Lrp6-Dkk1 Complex
pdb|3S8Z|A Chain A, Crystal Structure Of Lrp6-E3e4
Length = 623
Score = 117 bits (293), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 108/199 (54%), Gaps = 4/199 (2%)
Query: 4 GITVDCVEGQVYYSSVADKSSIKRAHLDGKNVEDVITTNIRSPEGLTFDWVNRVLYWTDS 63
+ D + ++Y++ ++ K+ I RA ++G +E V+ + PEG+ DW+ + LYW D+
Sbjct: 46 ALDFDVTDNRIYWTDISLKT-ISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADT 104
Query: 64 QMDTISMANLNDDQPKVIVSKDLVNPRGIVVHPYYRKLFWSDWNRSGPKIEWSNLDGTDR 123
+ I ++ L+ +V+V KDL +PR + + P ++W++W PKI+ + +DG++R
Sbjct: 105 GTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWG-GKPKIDRAAMDGSER 163
Query: 124 EIFLKAADLKLPNSLAVDFRTDELCWVDADSKSLECMTIRNRVRRKVYSNCTYPFGLSIT 183
+ ++ N L +D+ L W D D+ +E + R + + +PFGL+
Sbjct: 164 TTLV--PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIADDLPHPFGLTQY 221
Query: 184 DEKYYWTDWKTNRIESANK 202
+ YWTDW IE ANK
Sbjct: 222 QDYIYWTDWSRRSIERANK 240
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 108/212 (50%), Gaps = 11/212 (5%)
Query: 4 GITVDCVEGQVYYSSVADKSSIKRAHLDGKNVEDVITTNIRS------PEGLTFDWVNRV 57
I D ++ Q+Y+ + ++ I++A DG V+ +++ S P L+ D +R
Sbjct: 349 AIDYDPLDKQLYWID-SRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRY 407
Query: 58 LYWTDSQMDTISMANLNDDQPKVIVSKDLVNPRGIVVHPYYRKLFWSDWNRSGPKIEWSN 117
+YWT + I++ L+ V++ + PR IVV+P +++++ PKIE +
Sbjct: 408 IYWTCEATNVINVTRLDGRSVGVVLKGEQDRPRAIVVNPEKGYMYFTNLQERSPKIERAA 467
Query: 118 LDGTDREIFLKAADLKLPNSLAVDFRTDELCWVDADSKSLEC--MTIRNRVRRKVYSNCT 175
LDGT+RE+ + L P +LA+D R +L W D+D + +E ++ NR+ + SN
Sbjct: 468 LDGTEREVLFFSG-LSKPIALALDSRLGKLFWADSDLRRIESSDLSGANRIVLE-DSNIL 525
Query: 176 YPFGLSITDEKYYWTDWKTNRIESANKEGERA 207
P GL++ + YW D + IE + G
Sbjct: 526 QPVGLTVFENWLYWIDKQQQMIEKIDMTGREG 557
>pdb|1N7D|A Chain A, Extracellular Domain Of The Ldl Receptor
Length = 699
Score = 104 bits (259), Expect = 5e-23, Method: Composition-based stats.
Identities = 58/209 (27%), Positives = 115/209 (55%), Gaps = 12/209 (5%)
Query: 2 LIGITVDCVEGQVYYSSVADK----SSIKRAHLDGKNVEDVITTNIRSPEGLTFDWVNRV 57
++ + + ++Y+S ++ + + + RAH + + VI+ +I++P+GL DW++
Sbjct: 408 VVALDTEVASNRIYWSDLSQRMICSTQLDRAH-GVSSYDTVISRDIQAPDGLAVDWIHSN 466
Query: 58 LYWTDSQMDTISMANLNDDQPKVIVSKDLVNPRGIVVHPYYRKLFWSDWNRSGPKIEWSN 117
+YWTDS + T+S+A+ + K + + PR IVV P + ++W+DW + KI+
Sbjct: 467 IYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGG 525
Query: 118 LDGTDREIF-LKAADLKLPNSLAVDFRTDELCWVDADSKSLECMTIRNRVRRKVYSN--- 173
L+G D I+ L +++ PN + +D + L WVD+ S+ + + R+ + +
Sbjct: 526 LNGVD--IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKR 583
Query: 174 CTYPFGLSITDEKYYWTDWKTNRIESANK 202
+PF L++ ++K +WTD I SAN+
Sbjct: 584 LAHPFSLAVFEDKVFWTDIINEAIFSANR 612
>pdb|1IJQ|A Chain A, Crystal Structure Of The Ldl Receptor Ywtd-Egf Domain Pair
pdb|1IJQ|B Chain B, Crystal Structure Of The Ldl Receptor Ywtd-Egf Domain Pair
Length = 316
Score = 103 bits (256), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 116/209 (55%), Gaps = 12/209 (5%)
Query: 2 LIGITVDCVEGQVYYSSVADK----SSIKRAHLDGKNVEDVITTNIRSPEGLTFDWVNRV 57
++ + + ++Y+S ++ + + + RAH + + VI+ +I++P+GL DW++
Sbjct: 32 VVALDTEVASNRIYWSDLSQRMICSTQLDRAH-GVSSYDTVISRDIQAPDGLAVDWIHSN 90
Query: 58 LYWTDSQMDTISMANLNDDQPKVIVSKDLVNPRGIVVHPYYRKLFWSDWNRSGPKIEWSN 117
+YWTDS + T+S+A+ + K + ++ PR IVV P + ++W+DW + KI+
Sbjct: 91 IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGG 149
Query: 118 LDGTDREIF-LKAADLKLPNSLAVDFRTDELCWVDADSKSLECMTIRNRVRRKVYSN--- 173
L+G D I+ L +++ PN + +D + L WVD+ S+ + + R+ + +
Sbjct: 150 LNGVD--IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKR 207
Query: 174 CTYPFGLSITDEKYYWTDWKTNRIESANK 202
+PF L++ ++K +WTD I SAN+
Sbjct: 208 LAHPFSLAVFEDKVFWTDIINEAIFSANR 236
>pdb|3P5B|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
RECEPTOR IN AN Extended Conformation
Length = 400
Score = 102 bits (253), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 116/209 (55%), Gaps = 12/209 (5%)
Query: 2 LIGITVDCVEGQVYYSSVADK----SSIKRAHLDGKNVEDVITTNIRSPEGLTFDWVNRV 57
++ + + ++Y+S ++ + + + RAH + + VI+ +I++P+GL DW++
Sbjct: 114 VVALDTEVASNRIYWSDLSQRMICSTQLDRAH-GVSSYDTVISRDIQAPDGLAVDWIHSN 172
Query: 58 LYWTDSQMDTISMANLNDDQPKVIVSKDLVNPRGIVVHPYYRKLFWSDWNRSGPKIEWSN 117
+YWTDS + T+S+A+ + K + ++ PR IVV P + ++W+DW + KI+
Sbjct: 173 IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGG 231
Query: 118 LDGTDREIF-LKAADLKLPNSLAVDFRTDELCWVDADSKSLECMTIRNRVRRKVYSN--- 173
L+G D I+ L +++ PN + +D + L WVD+ S+ + + R+ + +
Sbjct: 232 LNGVD--IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKR 289
Query: 174 CTYPFGLSITDEKYYWTDWKTNRIESANK 202
+PF L++ ++K +WTD I SAN+
Sbjct: 290 LAHPFSLAVFEDKVFWTDIINEAIFSANR 318
>pdb|3P5C|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
RECEPTOR IN AN Extended Conformation
Length = 440
Score = 101 bits (251), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 116/209 (55%), Gaps = 12/209 (5%)
Query: 2 LIGITVDCVEGQVYYSSVADK----SSIKRAHLDGKNVEDVITTNIRSPEGLTFDWVNRV 57
++ + + ++Y+S ++ + + + RAH + + VI+ +I++P+GL DW++
Sbjct: 154 VVALDTEVASNRIYWSDLSQRMICSTQLDRAH-GVSSYDTVISRDIQAPDGLAVDWIHSN 212
Query: 58 LYWTDSQMDTISMANLNDDQPKVIVSKDLVNPRGIVVHPYYRKLFWSDWNRSGPKIEWSN 117
+YWTDS + T+S+A+ + K + ++ PR IVV P + ++W+DW + KI+
Sbjct: 213 IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGG 271
Query: 118 LDGTDREIF-LKAADLKLPNSLAVDFRTDELCWVDADSKSLECMTIRNRVRRKVYSN--- 173
L+G D I+ L +++ PN + +D + L WVD+ S+ + + R+ + +
Sbjct: 272 LNGVD--IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKR 329
Query: 174 CTYPFGLSITDEKYYWTDWKTNRIESANK 202
+PF L++ ++K +WTD I SAN+
Sbjct: 330 LAHPFSLAVFEDKVFWTDIINEAIFSANR 358
>pdb|3M0C|C Chain C, The X-Ray Crystal Structure Of Pcsk9 In Complex With The
Ldl Receptor
Length = 791
Score = 99.8 bits (247), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 116/209 (55%), Gaps = 12/209 (5%)
Query: 2 LIGITVDCVEGQVYYSSVADK----SSIKRAHLDGKNVEDVITTNIRSPEGLTFDWVNRV 57
++ + + ++Y+S ++ + + + RAH + + VI+ +I++P+GL DW++
Sbjct: 426 VVALDTEVASNRIYWSDLSQRMICSTQLDRAH-GVSSYDTVISRDIQAPDGLAVDWIHSN 484
Query: 58 LYWTDSQMDTISMANLNDDQPKVIVSKDLVNPRGIVVHPYYRKLFWSDWNRSGPKIEWSN 117
+YWTDS + T+S+A+ + K + ++ PR IVV P + ++W+DW + KI+
Sbjct: 485 IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGG 543
Query: 118 LDGTDREIF-LKAADLKLPNSLAVDFRTDELCWVDADSKSLECMTIRNRVRRKVYSN--- 173
L+G D I+ L +++ PN + +D + L WVD+ S+ + + R+ + +
Sbjct: 544 LNGVD--IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKR 601
Query: 174 CTYPFGLSITDEKYYWTDWKTNRIESANK 202
+PF L++ ++K +WTD I SAN+
Sbjct: 602 LAHPFSLAVFEDKVFWTDIINEAIFSANR 630
>pdb|1FUI|A Chain A, L-Fucose Isomerase From Escherichia Coli
pdb|1FUI|B Chain B, L-Fucose Isomerase From Escherichia Coli
pdb|1FUI|C Chain C, L-Fucose Isomerase From Escherichia Coli
pdb|1FUI|D Chain D, L-Fucose Isomerase From Escherichia Coli
pdb|1FUI|E Chain E, L-Fucose Isomerase From Escherichia Coli
pdb|1FUI|F Chain F, L-Fucose Isomerase From Escherichia Coli
Length = 591
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/59 (20%), Positives = 28/59 (47%)
Query: 149 WVDADSKSLECMTIRNRVRRKVYSNCTYPFGLSITDEKYYWTDWKTNRIESANKEGERA 207
W+ ++++ +R R+ +K+Y L+ D+ + + + + N+ N E RA
Sbjct: 200 WLGMKVQAVDMTELRRRIDQKIYDEAELEMALAWADKNFRYGEDENNKQYQRNAEQSRA 258
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,413,364
Number of Sequences: 62578
Number of extensions: 307931
Number of successful extensions: 843
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 637
Number of HSP's gapped (non-prelim): 58
length of query: 232
length of database: 14,973,337
effective HSP length: 96
effective length of query: 136
effective length of database: 8,965,849
effective search space: 1219355464
effective search space used: 1219355464
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)