RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5751
(232 letters)
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller,
EGF-like, structural protein; 2.30A {Mus musculus} SCOP:
b.68.5.1
Length = 267
Score = 234 bits (598), Expect = 9e-78
Identities = 90/229 (39%), Positives = 130/229 (56%), Gaps = 3/229 (1%)
Query: 3 IGITVDCVEGQVYYSSVADKSSIKRAHLDGKNVEDVITTNIRSPEGLTFDWVNRVLYWTD 62
IG+ DCV+ VY++ +++ S I RA L G +I ++ SPEG+ D + R ++WTD
Sbjct: 39 IGLAFDCVDKVVYWTDISEPS-IGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTD 97
Query: 63 SQMDTISMANLNDDQPKVIVSKDLVNPRGIVVHPYYRKLFWSDWNRSGPKIEWSNLDGTD 122
SQ+D I +A ++ Q +V+ LVNPRGIV P L+W+DWNR PKIE S++DGT+
Sbjct: 98 SQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN 157
Query: 123 REIFLKAADLKLPNSLAVDFRTDELCWVDADSKSLECMTIRNRVRRKVYSNCTYPFGLSI 182
R I + +L LPN L D + +LCWVDA + EC+ RRKV YPF ++
Sbjct: 158 RRILAQ-DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTS 216
Query: 183 TDEKYYWTDWKTNRIESANKEGERAPSIALDMMGTTYMYGIAAVPSSCP 231
+ Y+TDWKTN + + + + T +YGI S CP
Sbjct: 217 YGKNLYYTDWKTNSVIAMDLAISKEMDTFHP-HKQTRLYGITIALSQCP 264
Score = 130 bits (328), Expect = 3e-37
Identities = 58/216 (26%), Positives = 91/216 (42%), Gaps = 16/216 (7%)
Query: 19 VADKSSIKRAHLDGKNVED-----VITTNIRSPEGLTFDWVNRVLYWTDSQMDTISMANL 73
A I+R L+ ++ + + GL FD V++V+YWTD +I A+L
Sbjct: 6 FAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASL 65
Query: 74 NDDQPKVIVSKDLVNPRGIVVHPYYRKLFWSDWNRSGPKIEWSNLDGTDREIFLKAADLK 133
+ +P I+ +DL +P GI + R +FW+D +IE + +DGT R + L L
Sbjct: 66 HGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLD--RIEVAKMDGTQRRV-LFDTGLV 122
Query: 134 LPNSLAVDFRTDELCWVD--ADSKSLECMTIRNRVRRK-VYSNCTYPFGLSI--TDEKYY 188
P + D L W D D+ +E + RR N P GL+ +
Sbjct: 123 NPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLC 182
Query: 189 WTDWKTNRIESANKEGERAPSIALDMMGTTYMYGIA 224
W D T+R E N P + G Y + +
Sbjct: 183 WVDAGTHRAECLNPAQ---PGRRKVLEGLQYPFAVT 215
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G,
beta-propeller, protein binding; 3.30A {Rattus
norvegicus}
Length = 386
Score = 208 bits (529), Expect = 5e-66
Identities = 77/232 (33%), Positives = 116/232 (50%), Gaps = 4/232 (1%)
Query: 1 MLIGITVDCVEGQVYYSSVADKSSIKRAHLDGKNVEDVITTNIRSPEGLTFDWVNRVLYW 60
I + V++S V I RA+L+G NVE+V++T + SP GL DWV+ LYW
Sbjct: 117 NAIALDFHHRRELVFWSDVTLDR-ILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYW 175
Query: 61 TDSQMDTISMANLNDDQPKVIVSKDLVNPRGIVVHPYYRKLFWSDWNRSGPKIEWSNLDG 120
TDS I +ANL+ KV++ + L PR I +HP ++W+DW + P+IE S++DG
Sbjct: 176 TDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNT-PRIEASSMDG 234
Query: 121 TDREIFLKAADLKLPNSLAVDFRTDELCWVDADSKSLECMTIRNRVRRKVYSN-CTYPFG 179
+ R I L PN L +D+ + WVDA +E + R+ V S +PF
Sbjct: 235 SGRRIIAD-THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFA 293
Query: 180 LSITDEKYYWTDWKTNRIESANKEGERAPSIALDMMGTTYMYGIAAVPSSCP 231
+++ ++ YWTDW T I SANK + I + +
Sbjct: 294 ITVFEDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHTLHPQRQPA 345
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex,
beta propeller, cholesterol clearance, PCSK
autocatalytic cleavage; 7.01A {Homo sapiens}
Length = 791
Score = 209 bits (533), Expect = 2e-63
Identities = 57/234 (24%), Positives = 117/234 (50%), Gaps = 11/234 (4%)
Query: 5 ITVDCVEGQVYYSSVADKSSIKRAHLDGKN----VEDVITTNIRSPEGLTFDWVNRVLYW 60
+ + ++Y+S ++ + I LD + + VI+ +I++P+GL DW++ +YW
Sbjct: 429 LDTEVASNRIYWSDLSQRM-ICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYW 487
Query: 61 TDSQMDTISMANLNDDQPKVIVSKDLVNPRGIVVHPYYRKLFWSDWNRSGPKIEWSNLDG 120
TDS + T+S+A+ + K + ++ PR IVV P + ++W+DW KI+ L+G
Sbjct: 488 TDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTP-AKIKKGGLNG 546
Query: 121 TDREIFLKAADLKLPNSLAVDFRTDELCWVDADSKSLECMTIRNRVRRKVYSN---CTYP 177
D + +++ PN + +D + L WVD+ S+ + + R+ + + +P
Sbjct: 547 VDIYSLVT-ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHP 605
Query: 178 FGLSITDEKYYWTDWKTNRIESANKEGERAPSIALDMMGTTYMYGIAAVPSSCP 231
F L++ ++K +WTD I SAN+ ++ + + + + + P
Sbjct: 606 FSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSP-EDMVLFHNLTQP 658
Score = 98.0 bits (243), Expect = 1e-23
Identities = 38/138 (27%), Positives = 70/138 (50%), Gaps = 5/138 (3%)
Query: 4 GITVDCVEGQVYYSSVADKSSIKRAHLDGKNVEDVITTNIRSPEGLTFDWVNRVLYWTDS 63
I VD V G +Y++ + IK+ L+G ++ ++T NI+ P G+T D ++ LYW DS
Sbjct: 518 AIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS 577
Query: 64 QMDTISMANLNDDQPKVIVSKDLVNPRGIVVHPYYRKLFWSDWNRSGPKIEWSN-LDGTD 122
++ +IS ++N K I+ + + + K+FW+D I +N L G+D
Sbjct: 578 KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIIN--EAIFSANRLTGSD 635
Query: 123 REIFLKAADLKLPNSLAV 140
+ + +L P + +
Sbjct: 636 VNLLAE--NLLSPEDMVL 651
Score = 51.8 bits (123), Expect = 6e-08
Identities = 28/153 (18%), Positives = 57/153 (37%), Gaps = 10/153 (6%)
Query: 59 YWTDSQMDTISMANLNDDQPKVIVSKDLVNPRGIVVHPYYRKLFWSDWNRSGPKIEWSNL 118
Y + + L+ + ++ N + +++WSD S I + L
Sbjct: 397 YLFFTNRHEVRKMTLDRSEYTSLIPNL-RNVVALDTEVASNRIYWSDL--SQRMICSTQL 453
Query: 119 DGTDREIFLK---AADLKLPNSLAVDFRTDELCWVDADSKSLECMTIRNRVRRKVYSNC- 174
D + D++ P+ LAVD+ + W D+ ++ + R+ ++
Sbjct: 454 DRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENG 513
Query: 175 TYPFGLSI--TDEKYYWTDWKTN-RIESANKEG 204
+ P + + YWTDW T +I+ G
Sbjct: 514 SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG 546
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial
hypercholesterolemia, cholestero metabolism, lipid
transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens}
SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1
g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A
1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Length = 699
Score = 208 bits (530), Expect = 2e-63
Identities = 57/236 (24%), Positives = 117/236 (49%), Gaps = 11/236 (4%)
Query: 3 IGITVDCVEGQVYYSSVADKSSIKRAHLDGKN----VEDVITTNIRSPEGLTFDWVNRVL 58
+ + + ++Y+S ++ + I LD + + VI+ +I++P+GL DW++ +
Sbjct: 409 VALDTEVASNRIYWSDLSQRM-ICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNI 467
Query: 59 YWTDSQMDTISMANLNDDQPKVIVSKDLVNPRGIVVHPYYRKLFWSDWNRSGPKIEWSNL 118
YWTDS + T+S+A+ + K + + PR IVV P + ++W+DW KI+ L
Sbjct: 468 YWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTP-AKIKKGGL 526
Query: 119 DGTDREIFLKAADLKLPNSLAVDFRTDELCWVDADSKSLECMTIRNRVRRKVYSN---CT 175
+G D + +++ PN + +D + L WVD+ S+ + + R+ + +
Sbjct: 527 NGVDIYSLVT-ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLA 585
Query: 176 YPFGLSITDEKYYWTDWKTNRIESANKEGERAPSIALDMMGTTYMYGIAAVPSSCP 231
+PF L++ ++K +WTD I SAN+ ++ + + + + + P
Sbjct: 586 HPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSP-EDMVLFHQLTQP 640
Score = 56.7 bits (136), Expect = 1e-09
Identities = 21/103 (20%), Positives = 47/103 (45%), Gaps = 1/103 (0%)
Query: 4 GITVDCVEGQVYYSSVADKSSIKRAHLDGKNVEDVITTNIRSPEGLTFDWVNRVLYWTDS 63
GIT+D + G++Y+ + SI ++G N + ++ R + ++WTD
Sbjct: 544 GITLDLLSGRLYWVD-SKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDI 602
Query: 64 QMDTISMANLNDDQPKVIVSKDLVNPRGIVVHPYYRKLFWSDW 106
+ I AN +++++L++P +V+ + +W
Sbjct: 603 INEAIFSANRLTGSDVNLLAENLLSPEDMVLFHQLTQPRGVNW 645
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase,
hydrolase-lipid binding P complex; 3.30A {Homo sapiens}
PDB: 3p5c_L
Length = 400
Score = 199 bits (506), Expect = 2e-62
Identities = 57/239 (23%), Positives = 119/239 (49%), Gaps = 10/239 (4%)
Query: 1 MLIGITVDCVEGQVYYSSVADKSSIKRAHLDGKN----VEDVITTNIRSPEGLTFDWVNR 56
++ + + ++Y+S ++ + I LD + + VI+ +I++P+GL DW++
Sbjct: 113 NVVALDTEVASNRIYWSDLSQRM-ICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHS 171
Query: 57 VLYWTDSQMDTISMANLNDDQPKVIVSKDLVNPRGIVVHPYYRKLFWSDWNRSGPKIEWS 116
+YWTDS + T+S+A+ + K + ++ PR IVV P + ++W+DW KI+
Sbjct: 172 NIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTP-AKIKKG 230
Query: 117 NLDGTDREIFLKAADLKLPNSLAVDFRTDELCWVDADSKSLECMTIRNRVRRKVYSN--- 173
L+G D + +++ PN + +D + L WVD+ S+ + + R+ + +
Sbjct: 231 GLNGVDIYSLVT-ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKR 289
Query: 174 CTYPFGLSITDEKYYWTDWKTNRIESANKEGERAPSIALDMMGTTYMYGIAAVPSSCPG 232
+PF L++ ++K +WTD I SAN+ ++ + + + + + G
Sbjct: 290 LAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHNLTQPRG 348
Score = 56.0 bits (134), Expect = 2e-09
Identities = 29/153 (18%), Positives = 54/153 (35%), Gaps = 9/153 (5%)
Query: 59 YWTDSQMDTISMANLNDDQPKVIVSKDLVNPRGIVVHPYYRKLFWSDWNRSGPKIEWSNL 118
+ D + +L N + +++WSD S I + L
Sbjct: 84 AYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDL--SQRMICSTQL 141
Query: 119 DGTDREIFLKA---ADLKLPNSLAVDFRTDELCWVDADSKSLECMTIRNRVRRKVYS-NC 174
D D++ P+ LAVD+ + W D+ ++ + R+ ++ N
Sbjct: 142 DRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENG 201
Query: 175 TYPFGLSI--TDEKYYWTDWKTN-RIESANKEG 204
+ P + + YWTDW T +I+ G
Sbjct: 202 SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG 234
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta
propeller, protein binding-antagonist complex; HET: NAG
FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Length = 318
Score = 191 bits (487), Expect = 2e-60
Identities = 67/231 (29%), Positives = 117/231 (50%), Gaps = 6/231 (2%)
Query: 3 IGITVDCVEGQVYYSSVADKSSIKRAHLDGKN-VEDVITTNIRSPEGLTFDWVNRVLYWT 61
+ G +Y+S V++++ IKR + V++V+ + + SP+GL DW+ LYWT
Sbjct: 38 AAVDFVFSHGLIYWSDVSEEA-IKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWT 96
Query: 62 DSQMDTISMANLNDDQPKVIVSKDLVNPRGIVVHPYYRKLFWSDWNRSGPKIEWSNLDGT 121
DS+ + I ++NL+ KV+ ++L PR I + P ++W+DW PKIE + +DG+
Sbjct: 97 DSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEV-PKIERAGMDGS 155
Query: 122 DREIFLKAADLKLPNSLAVDFRTDELCWVDADSKSLECMTIRNRVRRK-VYSNCTYPFGL 180
R I + +++ PN L +D+ +L W DA + + R+ V + +PF L
Sbjct: 156 SRFIIIN-SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFAL 214
Query: 181 SITDEKYYWTDWKTNRIESANKEGERAPSIALDMMGTTYMYGIAAVPSSCP 231
++ ++ YWTDW T+ I + NK + + M A P
Sbjct: 215 TLFEDILYWTDWSTHSILACNKYTGEGLREIHSDI-FSPMDIHAFSQQRQP 264
Score = 120 bits (303), Expect = 4e-33
Identities = 47/192 (24%), Positives = 92/192 (47%), Gaps = 9/192 (4%)
Query: 19 VADKSSIKRAHL-DGKNVEDVITTNIRSPEGLTFDWVNRVLYWTDSQMDTISMANLND-D 76
A++ ++ +GK ++ + + F + + ++YW+D + I N +
Sbjct: 9 YANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTE 68
Query: 77 QPKVIVSKDLVNPRGIVVHPYYRKLFWSDWNRSGPKIEWSNLDGTDREIFLKAADLKLPN 136
+ +V L++P G+ KL+W+D + +IE SNLDG+ R++ L +L P
Sbjct: 69 SVQNVVVSGLLSPDGLACDWLGEKLYWTDSETN--RIEVSNLDGSLRKV-LFWQELDQPR 125
Query: 137 SLAVDFRTDELCWVDA-DSKSLECMTIRNRVRRK-VYSNCTYPFGLSI--TDEKYYWTDW 192
++A+D + + W D + +E + R + S +P GL++ ++K YW D
Sbjct: 126 AIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADA 185
Query: 193 KTNRIESANKEG 204
K N I +N +G
Sbjct: 186 KLNFIHKSNLDG 197
Score = 58.5 bits (141), Expect = 2e-10
Identities = 26/105 (24%), Positives = 49/105 (46%), Gaps = 3/105 (2%)
Query: 3 IGITVDCVEGQVYYSSVADKSSIKRAHLDGKNVEDVITTNIRSPEGLTFDWVNRVLYWTD 62
G+T+D E ++Y++ A + I +++LDG N + V+ ++ P LT +LYWTD
Sbjct: 169 NGLTLDYEEQKLYWA-DAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLF--EDILYWTD 225
Query: 63 SQMDTISMANLNDDQPKVIVSKDLVNPRGIVVHPYYRKLFWSDWN 107
+I N + + D+ +P I R+ ++
Sbjct: 226 WSTHSILACNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPC 270
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller,
lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1
g.3.11.1
Length = 316
Score = 189 bits (480), Expect = 2e-59
Identities = 56/207 (27%), Positives = 110/207 (53%), Gaps = 10/207 (4%)
Query: 3 IGITVDCVEGQVYYSSVADKSSIKRAHLDGKN----VEDVITTNIRSPEGLTFDWVNRVL 58
+ + + ++Y+S ++ + I LD + + VI+ +I++P+GL DW++ +
Sbjct: 33 VALDTEVASNRIYWSDLSQRM-ICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNI 91
Query: 59 YWTDSQMDTISMANLNDDQPKVIVSKDLVNPRGIVVHPYYRKLFWSDWNRSGPKIEWSNL 118
YWTDS + T+S+A+ + K + ++ PR IVV P + ++W+DW KI+ L
Sbjct: 92 YWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTP-AKIKKGGL 150
Query: 119 DGTDREIFLKAADLKLPNSLAVDFRTDELCWVDADSKSLECMTIRNRVRRKVYSNCT--- 175
+G D + +++ PN + +D + L WVD+ S+ + + R+ + +
Sbjct: 151 NGVDIYSLVT-ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLA 209
Query: 176 YPFGLSITDEKYYWTDWKTNRIESANK 202
+PF L++ ++K +WTD I SAN+
Sbjct: 210 HPFSLAVFEDKVFWTDIINEAIFSANR 236
Score = 119 bits (300), Expect = 9e-33
Identities = 39/214 (18%), Positives = 86/214 (40%), Gaps = 12/214 (5%)
Query: 19 VADKSSIKRAHLDGKNVEDVITTNIRSPEGLTFDWVNRVLYWTDSQMDTISMANLNDD-- 76
++ +++ LD +I N+R+ L + + +YW+D I L+
Sbjct: 6 FTNRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG 64
Query: 77 --QPKVIVSKDLVNPRGIVVHPYYRKLFWSDWNRSGPKIEWSNLDGTDREIFLKAADLKL 134
++S+D+ P G+ V + ++W+D + ++ G R+ + +
Sbjct: 65 VSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLG--TVSVADTKGVKRKTLFR-ENGSK 121
Query: 135 PNSLAVDFRTDELCWVDADSKS-LECMTIRNRVRRK-VYSNCTYPFGLSI--TDEKYYWT 190
P ++ VD + W D + + ++ + V N +P G+++ + YW
Sbjct: 122 PRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWV 181
Query: 191 DWKTNRIESANKEGERAPSIALDMMGTTYMYGIA 224
D K + I S + G +I D + + +A
Sbjct: 182 DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLA 215
Score = 58.5 bits (141), Expect = 2e-10
Identities = 21/104 (20%), Positives = 47/104 (45%), Gaps = 1/104 (0%)
Query: 3 IGITVDCVEGQVYYSSVADKSSIKRAHLDGKNVEDVITTNIRSPEGLTFDWVNRVLYWTD 62
GIT+D + G++Y+ + SI ++G N + ++ R + ++WTD
Sbjct: 167 NGITLDLLSGRLYWVD-SKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTD 225
Query: 63 SQMDTISMANLNDDQPKVIVSKDLVNPRGIVVHPYYRKLFWSDW 106
+ I AN +++++L++P +V+ + +W
Sbjct: 226 IINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHNLTQPRGVNW 269
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL
receptor-like protein, dickko YWTD B-propeller,
signaling protein; HET: NAG; 2.80A {Homo sapiens}
Length = 619
Score = 192 bits (488), Expect = 8e-58
Identities = 74/222 (33%), Positives = 116/222 (52%), Gaps = 4/222 (1%)
Query: 1 MLIGITVDCVEGQVYYSSVADKSSIKRAHLDGKNVEDVITTNIRSPEGLTFDWVNRVLYW 60
I I D VEG +Y++ ++ I+R+ +DG + V+T I P+G+ DWV R LYW
Sbjct: 350 HAIAIDYDPVEGYIYWTDDEVRA-IRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYW 408
Query: 61 TDSQMDTISMANLNDDQPKVIVSKDLVNPRGIVVHPYYRKLFWSDWNRSGPKIEWSNLDG 120
TD+ D I + LN K+++S+DL PR IV+ P ++W+DW PKIE + LDG
Sbjct: 409 TDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWTDWGEI-PKIERAALDG 467
Query: 121 TDREIFLKAADLKLPNSLAVDFRTDELCWVDADSKSLECMTIRNRVRRKVYSN-CTYPFG 179
+DR + + L PN LA+D+ ++ W DA + +E M RR + + + FG
Sbjct: 468 SDRVVLVN-TSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVEDKIPHIFG 526
Query: 180 LSITDEKYYWTDWKTNRIESANKEGERAPSIALDMMGTTYMY 221
++ + YWTDW+ IE +K I + +
Sbjct: 527 FTLLGDYVYWTDWQRRSIERVHKRSAEREVIIDQLPDLMGLK 568
Score = 176 bits (448), Expect = 4e-52
Identities = 64/204 (31%), Positives = 112/204 (54%), Gaps = 5/204 (2%)
Query: 3 IGITVDCVEGQVYYSSVADKSSIKRAHLDGKN-VEDVITTNIRSPEGLTFDWVNRVLYWT 61
+ G +Y+S V++++ IKR + V++V+ + + SP+GL DW+ LYWT
Sbjct: 43 AAVDFVFSHGLIYWSDVSEEA-IKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWT 101
Query: 62 DSQMDTISMANLNDDQPKVIVSKDLVNPRGIVVHPYYRKLFWSDWNRSGPKIEWSNLDGT 121
DS+ + I ++NL+ KV+ ++L PR I + P ++W+DW PKIE + +DG+
Sbjct: 102 DSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEV-PKIERAGMDGS 160
Query: 122 DREIFLKAADLKLPNSLAVDFRTDELCWVDADSKSLECMTIRNRVRRK-VYSNCTYPFGL 180
R I + +++ PN L +D+ +L W DA + + R+ V + +PF L
Sbjct: 161 SRFIIIN-SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFAL 219
Query: 181 SITDEKYYWTDWKTNRIESANKEG 204
++ ++ YWTDW T+ I + NK
Sbjct: 220 TLFEDILYWTDWSTHSILACNKYT 243
Score = 113 bits (283), Expect = 4e-29
Identities = 54/202 (26%), Positives = 101/202 (50%), Gaps = 9/202 (4%)
Query: 9 CVEGQVYYSSVADKSSIKRAHLDGKNVEDVIT--TNIRSPEGLTFDWVNRVLYWTDSQMD 66
C +G +A ++ ++R LD + D++ +IR + +D V +YWTD ++
Sbjct: 312 CKDGATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVR 371
Query: 67 TISMANLNDDQPKVIVSKDLVNPRGIVVHPYYRKLFWSDWNRSGPKIEWSNLDGTDREIF 126
I + ++ + +V+ + +P GI V R L+W+D +IE + L+GT R+I
Sbjct: 372 AIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTD--RIEVTRLNGTMRKIL 429
Query: 127 LKAADLKLPNSLAVDFRTDELCWVDA-DSKSLECMTIRNRVRRK-VYSNCTYPFGLSI-- 182
+ DL+ P ++ +D + W D + +E + R V ++ +P GL++
Sbjct: 430 IS-EDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVNTSLGWPNGLALDY 488
Query: 183 TDEKYYWTDWKTNRIESANKEG 204
+ K YW D KT++IE N +G
Sbjct: 489 DEGKIYWGDAKTDKIEVMNTDG 510
Score = 113 bits (283), Expect = 5e-29
Identities = 47/192 (24%), Positives = 92/192 (47%), Gaps = 9/192 (4%)
Query: 19 VADKSSIKRAHL-DGKNVEDVITTNIRSPEGLTFDWVNRVLYWTDSQMDTISMANLND-D 76
A++ ++ +GK ++ + + F + + ++YW+D + I N +
Sbjct: 14 YANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTE 73
Query: 77 QPKVIVSKDLVNPRGIVVHPYYRKLFWSDWNRSGPKIEWSNLDGTDREIFLKAADLKLPN 136
+ +V L++P G+ KL+W+D + +IE SNLDG+ R++ L +L P
Sbjct: 74 SVQNVVVSGLLSPDGLACDWLGEKLYWTDSETN--RIEVSNLDGSLRKV-LFWQELDQPR 130
Query: 137 SLAVDFRTDELCWVDA-DSKSLECMTIRNRVRRK-VYSNCTYPFGLSI--TDEKYYWTDW 192
++A+D + + W D + +E + R + S +P GL++ ++K YW D
Sbjct: 131 AIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADA 190
Query: 193 KTNRIESANKEG 204
K N I +N +G
Sbjct: 191 KLNFIHKSNLDG 202
Score = 63.3 bits (153), Expect = 7e-12
Identities = 43/255 (16%), Positives = 86/255 (33%), Gaps = 59/255 (23%)
Query: 5 ITVDCVEGQVYYSSVADKSSIKRAHLDGKNVEDVITTNIRSPEGLTFDWVNRVLYWTD-- 62
+ E +Y++ + S + G+ + I ++I SP + R T+
Sbjct: 217 FALTLFEDILYWTDWSTHSILACNKYTGEGLR-EIHSDIFSPMDIHAFSQQRQPNATNPC 275
Query: 63 -----------------------------------------------SQMDTISMANLND 75
++ + +L+
Sbjct: 276 GIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLLARRTDLRRISLDT 335
Query: 76 DQPKVIV--SKDLVNPRGIVVHPYYRKLFWSDWNRSGPKIEWSNLDGTDREIFLKAADLK 133
IV +D+ + I P ++W+D I S +DG+ + + A +
Sbjct: 336 PDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDD--EVRAIRRSFIDGSGSQFVV-TAQIA 392
Query: 134 LPNSLAVDFRTDELCWVDADSKSLECMTIRNRVRRKVYS-NCTYPFGLSI--TDEKYYWT 190
P+ +AVD+ L W D + +E + +R+ + S + P + + YWT
Sbjct: 393 HPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLDPMVGYMYWT 452
Query: 191 DW-KTNRIESANKEG 204
DW + +IE A +G
Sbjct: 453 DWGEIPKIERAALDG 467
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET:
NAG; 2.85A {Rattus norvegicus}
Length = 349
Score = 183 bits (466), Expect = 5e-57
Identities = 75/201 (37%), Positives = 111/201 (55%), Gaps = 4/201 (1%)
Query: 3 IGITVDCVEGQVYYSSVADKSSIKRAHLDGKNVEDVITTNIRSPEGLTFDWVNRVLYWTD 62
I + V++S V I RA+L+G NVE+V++T + SP GL DWV+ LYWTD
Sbjct: 76 IALDFHHRRELVFWSDVTLDR-ILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTD 134
Query: 63 SQMDTISMANLNDDQPKVIVSKDLVNPRGIVVHPYYRKLFWSDWNRSGPKIEWSNLDGTD 122
S I +ANL+ KV++ + L PR I +HP ++W+DW + P+IE S++DG+
Sbjct: 135 SGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNT-PRIEASSMDGSG 193
Query: 123 REIFLKAADLKLPNSLAVDFRTDELCWVDADSKSLECMTIRNRVRRKVY-SNCTYPFGLS 181
R I L PN L +D+ + WVDA +E + R+ V +PF ++
Sbjct: 194 RRIIAD-THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAIT 252
Query: 182 ITDEKYYWTDWKTNRIESANK 202
+ ++ YWTDW T I SANK
Sbjct: 253 VFEDSLYWTDWHTKSINSANK 273
Score = 102 bits (254), Expect = 6e-26
Identities = 54/203 (26%), Positives = 97/203 (47%), Gaps = 8/203 (3%)
Query: 12 GQVYYSSVADKSSIKRAHLDGKNVEDVITTNIRSPEGLTFDWVNRVLYWTDSQMDTISMA 71
G A++ I++ ++ N+ + L F +++W+D +D I A
Sbjct: 42 GPEPVLLFANRIDIRQVLPHRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRA 100
Query: 72 NLNDDQPKVIVSKDLVNPRGIVVHPYYRKLFWSDWNRSGPKIEWSNLDGTDREIFLKAAD 131
NLN + +VS L +P G+ V + KL+W+D S +IE +NLDG R++ L
Sbjct: 101 NLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTS--RIEVANLDGAHRKV-LLWQS 157
Query: 132 LKLPNSLAVDFRTDELCWVD-ADSKSLECMTIRNRVRRKVYS-NCTYPFGLSI--TDEKY 187
L+ P ++A+ + W D ++ +E ++ RR + + +P GL+I +
Sbjct: 158 LEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRM 217
Query: 188 YWTDWKTNRIESANKEGERAPSI 210
YW D K + IE AN +G ++
Sbjct: 218 YWVDAKHHVIERANLDGSHRKAV 240
Score = 53.0 bits (126), Expect = 2e-08
Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 5/109 (4%)
Query: 3 IGITVDCVEGQVYYSSVADKSSIKRAHLDGKNVEDVITTNIRSPEGLTFDWVNRVLYWTD 62
G+T+D ++Y+ A I+RA+LDG + + VI+ + P +T LYWTD
Sbjct: 206 NGLTIDYAGRRMYWVD-AKHHVIERANLDGSHRKAVISQGLPHPFAITVF--EDSLYWTD 262
Query: 63 SQMDTISMANLNDDQPKVIVSKDLVNPRGIVVHPYYRKLFWSDWNRSGP 111
+I+ AN + + I+ L P I + + + NR G
Sbjct: 263 WHTKSINSANKFTGKNQEIIRNKLHFPMDIHT--LHPQRQPAGKNRCGD 309
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein;
signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG;
1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Length = 628
Score = 189 bits (481), Expect = 8e-57
Identities = 59/236 (25%), Positives = 106/236 (44%), Gaps = 9/236 (3%)
Query: 3 IGITVDCVEGQVYYSSVADKSSIKRAHLDGKNVEDVITTNIRS------PEGLTFDWVNR 56
I D ++ Q+Y+ I++A DG V+ +++ S P L+ D +R
Sbjct: 343 RAIDYDPLDKQLYWIDSRQNM-IRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSR 401
Query: 57 VLYWTDSQMDTISMANLNDDQPKVIVSKDLVNPRGIVVHPYYRKLFWSDWNRSGPKIEWS 116
+YWT + I++ L+ V++ + PR +VV+P +++++ PKIE +
Sbjct: 402 YIYWTCEATNVINVTRLDGRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERA 461
Query: 117 NLDGTDREIFLKAADLKLPNSLAVDFRTDELCWVDADSKSLECMTIRNRVRRKV-YSNCT 175
LDGT+RE+ L + L P +LA+D R +L W D+D + +E + R + SN
Sbjct: 462 ALDGTEREV-LFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGANRIVLEDSNIL 520
Query: 176 YPFGLSITDEKYYWTDWKTNRIESANKEGERAPSIALDMMGTTYMYGIAAVPSSCP 231
P GL++ + YW D + IE + G + + +
Sbjct: 521 QPVGLTVFENWLYWIDKQQQMIEKIDMTGREGRTKVQARIAQLSDIHAVKELNLQE 576
Score = 188 bits (478), Expect = 2e-56
Identities = 60/208 (28%), Positives = 111/208 (53%), Gaps = 4/208 (1%)
Query: 3 IGITVDCVEGQVYYSSVADKSSIKRAHLDGKNVEDVITTNIRSPEGLTFDWVNRVLYWTD 62
+ D + ++Y++ ++ K+ I RA ++G +E V+ + PEG+ DW+ + LYW D
Sbjct: 40 SALDFDVTDNRIYWTDISLKT-ISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWAD 98
Query: 63 SQMDTISMANLNDDQPKVIVSKDLVNPRGIVVHPYYRKLFWSDWNRSGPKIEWSNLDGTD 122
+ + I ++ L+ +V+V KDL +PR + + P ++W++W PKI+ + +DG++
Sbjct: 99 TGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGK-PKIDRAAMDGSE 157
Query: 123 REIFLKAADLKLPNSLAVDFRTDELCWVDADSKSLECMTIRNRVRRKVYSNCTYPFGLSI 182
R + ++ N L +D+ L W D D+ +E + R + + +PFGL+
Sbjct: 158 RTTLVP--NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIADDLPHPFGLTQ 215
Query: 183 TDEKYYWTDWKTNRIESANKEGERAPSI 210
+ YWTDW IE ANK + +I
Sbjct: 216 YQDYIYWTDWSRRSIERANKTSGQNRTI 243
Score = 126 bits (318), Expect = 9e-34
Identities = 58/190 (30%), Positives = 90/190 (47%), Gaps = 7/190 (3%)
Query: 19 VADKSSIKRAHLDGKNVEDVI-TTNIRSPEGLTFDWVNRVLYWTDSQMDTISMANLNDDQ 77
+ ++ I+R L+ N I T ++ L FD + +YWTD + TIS A +N
Sbjct: 11 FSRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSA 70
Query: 78 PKVIVSKDLVNPRGIVVHPYYRKLFWSDWNRSGPKIEWSNLDGTDREIFLKAADLKLPNS 137
+ +V L P G+ V + L+W+D + +IE S LDG R++ L DL P +
Sbjct: 71 LEHVVEFGLDYPEGMAVDWLGKNLYWADTGTN--RIEVSKLDGQHRQV-LVWKDLDSPRA 127
Query: 138 LAVDFRTDELCWVDADSKS-LECMTIRNRVRRKVYSNCTYPFGLSI--TDEKYYWTDWKT 194
LA+D + W + K ++ + R + N GL+I + YWTD T
Sbjct: 128 LALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDT 187
Query: 195 NRIESANKEG 204
N IES+N G
Sbjct: 188 NLIESSNMLG 197
Score = 110 bits (275), Expect = 5e-28
Identities = 44/205 (21%), Positives = 89/205 (43%), Gaps = 16/205 (7%)
Query: 15 YYSSVADKSSIKRAHLDGKNVEDVIT--TNIRSPEGLTFDWVNRVLYWTDSQMDTISMAN 72
+ + KS+I R +D + D+I ++R+ + +D +++ LYW DS+ + I A
Sbjct: 309 TFLLFSQKSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQ 368
Query: 73 LNDDQPKVIVSKDLVN------PRGIVVHPYYRKLFWSDWNRSGPKIEWSNLDGTDREIF 126
+ Q +V + + P + + Y R ++W+ + I + LDG +
Sbjct: 369 EDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATN--VINVTRLDGRSVGVV 426
Query: 127 LKAADLKLPNSLAVDFRTDELCWVDADSKS--LECMTIRNRVRRK-VYSNCTYPFGLSI- 182
LK + P ++ V+ + + + +S +E + R +S + P L++
Sbjct: 427 LK-GEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSKPIALALD 485
Query: 183 -TDEKYYWTDWKTNRIESANKEGER 206
K +W D RIES++ G
Sbjct: 486 SRLGKLFWADSDLRRIESSDLSGAN 510
Score = 54.8 bits (131), Expect = 6e-09
Identities = 22/107 (20%), Positives = 41/107 (38%), Gaps = 3/107 (2%)
Query: 3 IGITVDCVEGQVYYSSVADKSSIKRAHLDGKNVEDVITTNIRSPEGLTFDWVNRVLYWTD 62
I + +D G+++++ +D I+ + L G N + +NI P GLT LYW D
Sbjct: 480 IALALDSRLGKLFWAD-SDLRRIESSDLSGANRIVLEDSNILQPVGLTVF--ENWLYWID 536
Query: 63 SQMDTISMANLNDDQPKVIVSKDLVNPRGIVVHPYYRKLFWSDWNRS 109
Q I ++ + + V + I + +
Sbjct: 537 KQQQMIEKIDMTGREGRTKVQARIAQLSDIHAVKELNLQEYRQHPCA 583
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural
genomics, joint center F structural genomics, JCSG;
1.88A {Eubacterium rectale}
Length = 302
Score = 77.8 bits (191), Expect = 3e-17
Identities = 21/198 (10%), Positives = 67/198 (33%), Gaps = 21/198 (10%)
Query: 10 VEGQVYYSSVAD--KSSIKRAHLDGKNVEDVITTNIRSPEGLTFDWVNRVLYWTDSQMDT 67
+ +YY +S+ R +DG+ + + + + + +R Y+ + +
Sbjct: 114 IGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYLFT-----CNTSDRYFYYNNPKNGQ 168
Query: 68 ISMANLNDDQPKVIVSKDLVNPRGIVVHPYYRKLFWSDWNRSGPKIEWSNLDGTDREIFL 127
+ + + + P + +++ D N I N++ + +
Sbjct: 169 LYRYDTASQSEALFYDCNCYKPVVL----DDTNVYYMDVN-RDNAIVHVNINNPNPVVLT 223
Query: 128 KAADLKLPNSLAVDFRTDELC-WVDADSKSLECMTIRNRVRRKVYSNCTYPFGLSITDEK 186
+ N + + D+ +L + +++ +++T +
Sbjct: 224 E------ANIEHYNVYGSLIFYQRGGDNPALCVVKNDGTGFKELAKG--EFCNINVTSQY 275
Query: 187 YYWTDWKTNRIESANKEG 204
Y+TD+ +N+ + +
Sbjct: 276 VYFTDFVSNKEYCTSTQN 293
Score = 56.7 bits (136), Expect = 9e-10
Identities = 21/204 (10%), Positives = 57/204 (27%), Gaps = 22/204 (10%)
Query: 11 EGQVYYSSVADKSSIKRAHLDGKNVEDVITTNIRSPEGLTFDWVNRVLYWTDSQMDTISM 70
+G+V++S+ D + ++DG N+ + + +Y+ + I+
Sbjct: 25 DGEVFFSNTNDNGRLYAMNIDGSNIHKLSNDTAMY-----INADKNYVYYVRNNNQKITS 79
Query: 71 ANLNDDQPKVIVS--------KDLVNPRGIVVHPYYRKLFWSDWNRS-GPKIEWSNLDGT 121
+ L I +++ ++ + +DG
Sbjct: 80 QTFFSYDRNSLCRIKRNGHGSTVLDPDPCIYASLIGNYIYYLHYDTQTATSLYRIRIDGE 139
Query: 122 DREIFLKAADLKLPNSLAVDFRTDELCWVDADSKSLECMTIRNRVRRKVYSNCTYPFGLS 181
+++ + + + + L ++ Y Y +
Sbjct: 140 EKKKIKN------HYLFTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDCNCYK-PVV 192
Query: 182 ITDEKYYWTDWKTN-RIESANKEG 204
+ D Y+ D + I N
Sbjct: 193 LDDTNVYYMDVNRDNAIVHVNINN 216
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A
{Staphylococcus cohnii}
Length = 300
Score = 42.3 bits (100), Expect = 5e-05
Identities = 34/205 (16%), Positives = 74/205 (36%), Gaps = 28/205 (13%)
Query: 4 GITVDCVEGQVYYSSVADKSSIKRAHLDGKNVEDVITTNIRSPEGLTFDWVNRVLYWTDS 63
GIT +G+V+++ + I G+ E + T L + + ++T++
Sbjct: 24 GITSS-EDGKVWFTQHKA-NKISSLDQSGRIKEFEVPTPDAKVMCLIVSSLGDI-WFTEN 80
Query: 64 QMDTISMANLNDDQPKVIVSKDLVNPRGIVVHPYYRKLFWSDWNRSGPKIEWSNLDGTDR 123
+ I + + + + P GI ++++ N G +I DGT
Sbjct: 81 GANKIGKLSKKGGFTEYPLPQPDSGPYGITEGL-NGDIWFTQLN--GDRIGKLTADGTIY 137
Query: 124 EIFLKAADLKLPNSLAVDFRTDELCWVDADSKSLECMTIRNRVRR----------KVYSN 173
E L P + + +D W ++++ N + R + +N
Sbjct: 138 EYDL-PNKGSYPAFITLG--SDNALWF-TENQN-------NSIGRITNTGKLEEYPLPTN 186
Query: 174 CTYPFGLSIT-DEKYYWTDWKTNRI 197
P G++ D ++ + N+I
Sbjct: 187 AAAPVGITSGNDGALWFVEIMGNKI 211
Score = 33.4 bits (77), Expect = 0.046
Identities = 17/95 (17%), Positives = 34/95 (35%), Gaps = 7/95 (7%)
Query: 4 GITVDCVEGQVYYSSVADKSS--IKRAHLDGKNVEDVITTNIRSPEGLTFDWVNRVLYWT 61
GIT +G ++ + I R G+ E I T P +T + + ++T
Sbjct: 192 GITSG-NDGALW---FVEIMGNKIGRITTTGEISEYDIPTPNARPHAITAGKNSEI-WFT 246
Query: 62 DSQMDTISMANLNDDQPKVIVSKDLVNPRGIVVHP 96
+ + I ++ + + + P GI
Sbjct: 247 EWGANQIGRITNDNTIQEYQLQTENAEPHGITFGK 281
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.4 bits (94), Expect = 3e-04
Identities = 45/253 (17%), Positives = 66/253 (26%), Gaps = 120/253 (47%)
Query: 3 IGITVDCVEGQVYYSSVADKSSIKRAHLDGKNVEDVITTNIRSP------EGLTFDWVNR 56
IG V Y + + SI +ED + N P LT + V
Sbjct: 306 IG-----VRCYEAYPNTSLPPSI---------LEDSLENNEGVPSPMLSISNLTQEQVQD 351
Query: 57 VLYWTDSQMDTISMANLNDDQP---KVIVSKDLVN-PRGIVV--HP--------YYRKLF 102
+ N P +V +S LVN + +VV P RK
Sbjct: 352 YV------------NKTNSHLPAGKQVEIS--LVNGAKNLVVSGPPQSLYGLNLTLRKAK 397
Query: 103 WS---DWNR---SG--PKIEW----------SNL----------DGTDREIFLKAADLKL 134
D +R S K S+L D + A D+++
Sbjct: 398 APSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQI 457
Query: 135 PNSLAV-------DFR------TDELC---------WVDADSKS--------------LE 158
P V D R ++ + W L
Sbjct: 458 P----VYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLG 513
Query: 159 CMTIRNR----VR 167
+T RN+ VR
Sbjct: 514 VLTHRNKDGTGVR 526
Score = 36.6 bits (84), Expect = 0.006
Identities = 29/182 (15%), Positives = 52/182 (28%), Gaps = 67/182 (36%)
Query: 71 ANLNDDQPKVIVSKDLVNPRGIVVHPYYRKLFWSDWNRSGPKIEWSNL-----DGTDR-- 123
A L + +V + + Y + R K S L +G +
Sbjct: 106 AKLLQENDTTLVKTKEL------IKNYITARIMA--KRPFDKKSNSALFRAVGEGNAQLV 157
Query: 124 EIF------------LKAADL-KLPNSLAVDFRTDELCWVDADSKSLECMTIRNRVRRKV 170
IF L+ DL + + L D + +++L +R +
Sbjct: 158 AIFGGQGNTDDYFEELR--DLYQTYHVLVGDL-------IKFSAETLS-----ELIRTTL 203
Query: 171 YSNCTYPFGLSITDEKYYWTDWKTNRIESANKEGERAPSIALDMMGTTYMYGIAAVPSSC 230
+ + GL+I + W N P Y+ ++P SC
Sbjct: 204 DAEKVFTQGLNILE-------WLENP--------SNTPD-------KDYL---LSIPISC 238
Query: 231 PG 232
P
Sbjct: 239 PL 240
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic
resistance, E mechanism, virginiamycin B hydrolase
streptogramin; HET: MSE; 1.65A {Staphylococcus aureus}
PDB: 2z2o_A 2z2p_A*
Length = 299
Score = 38.8 bits (91), Expect = 7e-04
Identities = 40/216 (18%), Positives = 81/216 (37%), Gaps = 34/216 (15%)
Query: 4 GITVDCVEGQVYYSSVADKSS--IKRAHLDGKNVEDVITTNIRSPEGLTFDWVNRVLYWT 61
GITV +G+V+ + + I +LDGK E + T LT + +++T
Sbjct: 19 GITVS-DKGKVW---ITQHKANMISCINLDGKITEYPLPTPDAKVMCLTIS-SDGEVWFT 73
Query: 62 DSQMDTISMANLNDDQPKVIVSKDLVNPRGIVVHPYYRKLFWSDW-NRSGPKIEWSNLDG 120
++ + I + + P GI P +++++ +I DG
Sbjct: 74 ENAANKIGRITKKGIIKEYTLPNPDSAPYGITEGP-NGDIWFTEMNGNRIGRI---TDDG 129
Query: 121 TDREIFLKAADLKLPNSLAVDFRTDELCWVDADSKSLECMTIRNRVRR----------KV 170
RE L P+ + + +D W ++++ N + R K+
Sbjct: 130 KIREYEL-PNKGSYPSFITLG--SDNALWF-TENQN-------NAIGRITESGDITEFKI 178
Query: 171 YSNCTYPFGLSIT-DEKYYWTDWKTNRIESANKEGE 205
+ + P G++ D+ ++ + N+I GE
Sbjct: 179 PTPASGPVGITKGNDDALWFVEIIGNKIGRITTSGE 214
Score = 38.8 bits (91), Expect = 7e-04
Identities = 22/140 (15%), Positives = 47/140 (33%), Gaps = 11/140 (7%)
Query: 4 GITVDCVEGQVYYSSVADKSS--IKRAHLDGKNVEDVITTNIRSPEGLTFDWVNRVLYWT 61
IT+ + ++ + + I R G E I T P G+T + L++
Sbjct: 145 FITLG-SDNALW---FTENQNNAIGRITESGDITEFKIPTPASGPVGITKG-NDDALWFV 199
Query: 62 DSQMDTISMANLNDDQPKVIVSKDLVNPRGIVVHPYYRKLFWSDWNRSGPKIEWSNLDGT 121
+ + I + + + + P I L++++W + KI +
Sbjct: 200 EIIGNKIGRITTSGEITEFKIPTPNARPHAITAGA-GIDLWFTEWGAN--KIGRLTSNNI 256
Query: 122 DREIFLKAADLKLPNSLAVD 141
E + P+ + D
Sbjct: 257 IEEYPI-QIKSAEPHGICFD 275
Score = 36.2 bits (84), Expect = 0.005
Identities = 17/93 (18%), Positives = 33/93 (35%), Gaps = 3/93 (3%)
Query: 4 GITVDCVEGQVYYSSVADKSSIKRAHLDGKNVEDVITTNIRSPEGLTFDWVNRVLYWTDS 63
GIT + +++ + + I R G+ E I T P +T + ++T+
Sbjct: 187 GITKG-NDDALWFVEIIG-NKIGRITTSGEITEFKIPTPNARPHAITAGAGIDL-WFTEW 243
Query: 64 QMDTISMANLNDDQPKVIVSKDLVNPRGIVVHP 96
+ I N+ + + P GI
Sbjct: 244 GANKIGRLTSNNIIEEYPIQIKSAEPHGICFDG 276
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural
genomics, PSI, protein structure initiative; 1.80A
{Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Length = 270
Score = 38.4 bits (90), Expect = 0.001
Identities = 37/167 (22%), Positives = 68/167 (40%), Gaps = 21/167 (12%)
Query: 4 GITVDCVEGQVYYSSVADKSS--IKRAHLDGKNVEDVITTNIRSPEGLTFDWVNRVLYWT 61
G+ VD +G VY VAD+ + + + K + T + P+G+ D V Y T
Sbjct: 112 GLAVD-TQGAVY---VADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNV-YVT 166
Query: 62 DSQMDTISMANLNDDQPKVIVSKDLVNPRGIVVHPYYRKLFWSDWNRSGPKIEWSNLDGT 121
D+ + + + V+ D+ P GI V ++ ++ N + ++ T
Sbjct: 167 DTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGT-VYVTEHNTN--QVVKLLAGST 223
Query: 122 DREIFLKAADLKLPNSLAVDFRTDELCWVDADSKSLECMTIRNRVRR 168
+ L P ++AVD +D +V AD + +RV +
Sbjct: 224 TSTVL-PFTGLNTPLAVAVD--SDRTVYV-ADRGN-------DRVVK 259
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati midwest center for structural genomi
CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Length = 331
Score = 37.1 bits (86), Expect = 0.003
Identities = 17/168 (10%), Positives = 43/168 (25%), Gaps = 21/168 (12%)
Query: 44 RSPEGLTFDWVNRVLYWTDSQMDTISMANLNDDQPKVIVSKDLV-NPRGIVVHPYYRKLF 102
+ T T+ + PKV+ ++ + + + P +
Sbjct: 40 YDFVDTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAV 99
Query: 103 WSDWNRSGPKIEWSNLDGTDREIFLKAADLKLPNSLAVD-----------FRTDELCWVD 151
+ + + +A+ + +
Sbjct: 100 TVTGLNHPFNM--QSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFK 157
Query: 152 ADSKSLECMTIRNRVRRKVYSNCTYPFGLSIT-DEKYYW-TDWKTNRI 197
D+ + T + + S T PF ++ T D + + + N I
Sbjct: 158 IDADGVLFDTGQEFI-----SGGTRPFNITFTPDGNFAFVANLIGNSI 200
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 33.7 bits (76), Expect = 0.049
Identities = 20/156 (12%), Positives = 45/156 (28%), Gaps = 37/156 (23%)
Query: 52 DWVNRVLYWTDSQMDTISMANLNDDQPKVI-VSKDLVNPRGIVVHPYYRKLFWS------ 104
D + W D ++ +I S +++ P YRK+F
Sbjct: 339 DGLATWDNWKHVNCDKLT---------TIIESSLNVLEP------AEYRKMFDRLSVFPP 383
Query: 105 DWNRSGPKIE--WSNLDGTDREIFLKAADLKLPNSLAVDFRTDEL------CWVDADSKS 156
+ + W ++ +D + + KL V+ + E +++ K
Sbjct: 384 SAHIPTILLSLIWFDVIKSDVMVVVN----KLHKYSLVEKQPKESTISIPSIYLELKVKL 439
Query: 157 LECMTIRNRVRRKVYSNCTYP---FGLSITDEKYYW 189
+ + T+ D+ +Y
Sbjct: 440 ENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYS 475
Score = 27.1 bits (59), Expect = 6.1
Identities = 34/246 (13%), Positives = 67/246 (27%), Gaps = 98/246 (39%)
Query: 30 LDGKNVED----VITTN-----IRSPEGLT----------------------------FD 52
D K+V+D +++ I S + ++ +
Sbjct: 33 FDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYK 92
Query: 53 WV-------------NRVLY-------WTDSQMDTISMANLNDDQPKVIVSKDLVNPR-- 90
++ +Y + D+Q+ + N++ QP + + + L+ R
Sbjct: 93 FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV--FAKYNVSRLQPYLKLRQALLELRPA 150
Query: 91 -GIVVH----------------PYYRKLFWSDWNRSGPKIEWSNLDGTDREIFLKAADLK 133
+++ Y + KI W NL L+
Sbjct: 151 KNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF------KIFWLNL-KNCNS---PETVLE 200
Query: 134 LPNSLAVDFRTDELCWVDADSK-SLECMTIRNRVRR----KVYSNCTYPFGLSITDEKYY 188
+ L + D S L +I+ +RR K Y NC L +
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC-----LLVLLNVQN 255
Query: 189 WTDWKT 194
W
Sbjct: 256 AKAWNA 261
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller,
structural genomics, PSI-2, Pro structure initiative;
1.90A {Bacteroides uniformis}
Length = 328
Score = 33.1 bits (75), Expect = 0.065
Identities = 12/114 (10%), Positives = 35/114 (30%), Gaps = 12/114 (10%)
Query: 4 GITVDCVEGQVYYSSVADKSSIKRAHLDGK---------NVEDVITTNI-RSPEGLTFDW 53
+ +D +++ + + VE + P + +
Sbjct: 176 SLVMD-KYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNG 234
Query: 54 VNRVLYWTDSQMDTISMANLNDDQPKVIVSKDLVNPRGIVVHPYYRKLFWSDWN 107
LYW ++ + + + + +D G+ V+P +++ +D
Sbjct: 235 TRDTLYWINNDIWRMPVEADRVPVRPFLEFRD-TKYYGLTVNPNNGEVYVADAI 287
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding;
1.70A {Escherichia coli} PDB: 3vh0_A*
Length = 353
Score = 32.8 bits (75), Expect = 0.079
Identities = 30/182 (16%), Positives = 67/182 (36%), Gaps = 26/182 (14%)
Query: 35 VEDVITTNIRSPEGLTFDWVNRVLYWTDSQMDTISMANLNDDQPK-----------VIVS 83
V I + P G T + + L++ ++ ++ + + K V
Sbjct: 81 VTQAIHND-LKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVR 139
Query: 84 KDLVNPRGIVVHPYYRKLFWSDWNRSGPKIEWSNLDGTDREIFLKAADL-KLPNSLAVDF 142
PR +V ++ S + +DG + ++ + K+ LA+D
Sbjct: 140 PL--QPRELVADDATNTVYISGIGKES---VIWVVDGGNIKLKTAIQNTGKMSTGLALDS 194
Query: 143 RTDELCWV-DADSKSLECMTIRNRV--RRKVYSNCTYPFGLSIT---DEKYYW-TDWKTN 195
L + +AD + + T N++ R+K+ + F ++I+ + + TD K
Sbjct: 195 EGKRL-YTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAA 253
Query: 196 RI 197
+
Sbjct: 254 EV 255
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller
superfamily, protein binding; HET: YCM; 2.40A
{Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Length = 391
Score = 31.3 bits (71), Expect = 0.23
Identities = 31/201 (15%), Positives = 64/201 (31%), Gaps = 38/201 (18%)
Query: 35 VEDVITTNIRSPEGLTFDWVNRVLYWTDSQMDTISMANLNDDQPKVIVSKDLVNPRGIVV 94
V I +P G +Y ++ + +S+ + + V +P+G+ V
Sbjct: 24 VTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAG-SSPQGVAV 81
Query: 95 HPYYRKLFWSDWNRSGPKIEWSNLDGTDREIFLKAADLKLPNSLAVD----------FRT 144
P ++++ ++ S + +D T + K P LA+
Sbjct: 82 SPDGKQVYVTNMASSTLSV----IDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGD 137
Query: 145 DELCWVDADSKSLECMTIRNRVRRKVYSNCTYPFGLSIT-DEKYYWT-----------DW 192
+ ++ + V V S P G+++T D + D
Sbjct: 138 KTVSVINTVT---------KAVINTV-SVGRSPKGIAVTPDGTKVYVANFDSMSISVIDT 187
Query: 193 KTNRIESANKEGERAPSIALD 213
TN + K IA++
Sbjct: 188 VTNSVIDTVKVEAAPSGIAVN 208
Score = 26.3 bits (58), Expect = 9.0
Identities = 8/54 (14%), Positives = 19/54 (35%), Gaps = 3/54 (5%)
Query: 44 RSPEGLTFDWVNRVLYWTDSQMDTISMANLNDDQPKVIVSKDL-VNPRGIVVHP 96
P G+ + +Y S +T+S+ + + + + + NP
Sbjct: 244 PDPAGIAVTPDGKKVYVALSFXNTVSVIDTATN--TITATMAVGKNPYASGQFI 295
>4e3x_A Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial; amino
acid metabolism, proline inhibition, oxidoreductase;
HET: 16P PGE; 1.24A {Mus musculus} PDB: 3v9k_A* 3v9l_A*
3v9j_A* 3v9g_A 3v9h_A 3v9i_A
Length = 563
Score = 31.1 bits (71), Expect = 0.28
Identities = 10/20 (50%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Query: 114 EWSNLDGTDR-EIFLKAADL 132
EW DR ++FLKAAD+
Sbjct: 115 EWDLKPMADRAQVFLKAADM 134
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 0.50
Identities = 6/31 (19%), Positives = 15/31 (48%), Gaps = 7/31 (22%)
Query: 185 EKYYWTDWKTNRIESANK--EGERAPSIALD 213
EK +++++ K + AP++A+
Sbjct: 18 EKQ-----ALKKLQASLKLYADDSAPALAIK 43
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase;
2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A*
2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Length = 322
Score = 29.7 bits (66), Expect = 0.79
Identities = 23/169 (13%), Positives = 50/169 (29%), Gaps = 30/169 (17%)
Query: 4 GITVDCVEGQVYYSSVADKSS-IKRAHLDGKNVEDVIT----TNIRSPEGLTFDWVNRVL 58
I+ + Q+Y + D + +G + + T + +T D ++
Sbjct: 84 DISYNLQNNQLY---IVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIV 140
Query: 59 YWTDS----QMDTISMANLNDDQPK------------VIVSKDLVNPRGIVVHPYYRKLF 102
Y+TD + D+ ++ K+L P G V +
Sbjct: 141 YFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVL 200
Query: 103 WSD-WNRSGPKIEWSNLDGTDREIFLKAADLKLPNSLAVDFRTDELCWV 150
++ + K E+ + P ++ + D WV
Sbjct: 201 VAEFLSHQIVKYWLEGPKKGTAEVL---VKIPNPGNIKRN--ADGHFWV 244
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller,
immunoglobulin-like, structural GEN joint center for
structural genomics, JCSG; 2.23A {Bacteroides
thetaiotaomicron}
Length = 430
Score = 29.3 bits (65), Expect = 1.0
Identities = 9/72 (12%), Positives = 23/72 (31%), Gaps = 2/72 (2%)
Query: 4 GITVDCVEGQVYYSSVADKSSIKRAHLDGKNVEDVITT-NIRSPEGLTFDWVNRVLYWTD 62
G + G++Y++S + + R + + T + + F Y
Sbjct: 230 GAETHPINGELYFNS-WNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVV 288
Query: 63 SQMDTISMANLN 74
I ++ +
Sbjct: 289 VNQHYILRSDYD 300
>3qan_A 1-pyrroline-5-carboxylate dehydrogenase 1; proline oxidation, redox
control, apoptosis, NAD binding, oxidoreductase,
PSI-biology; 1.95A {Bacillus halodurans} PDB: 3rjl_A
Length = 538
Score = 29.5 bits (67), Expect = 1.1
Identities = 7/20 (35%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
Query: 114 EWSNLDGTDR-EIFLKAADL 132
W N++ +R I +KAA +
Sbjct: 89 TWRNVNPEERANILVKAAAI 108
>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase;
2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B
3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*
Length = 434
Score = 29.1 bits (65), Expect = 1.3
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 17/60 (28%)
Query: 65 MDTISMANLND---------DQPKVIVSKDLVNPR--GIVVHPYYRKL------FWSDWN 107
MDTI ++NLN +PK V+ + +N R V P++ K+ F+ ++
Sbjct: 72 MDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFH 131
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic
subunit chimera; multifunction macromolecular complex,
ubiquitin, ATP, conformational change, thioester,
switch, adenylation, protein turnover, ligase; HET: ATP;
2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1
Length = 805
Score = 28.7 bits (64), Expect = 2.0
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 11/48 (22%)
Query: 65 MDTISMANLND---------DQPKVIVSKDLVNPR--GIVVHPYYRKL 101
MDTI ++NLN +PK V+ + +N R V P++ K+
Sbjct: 443 MDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNKI 490
>2p4o_A Hypothetical protein; putative lactonase, structural genomics,
joint center for ST genomics, JCSG, protein structure
initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme}
SCOP: b.68.6.3
Length = 306
Score = 27.6 bits (61), Expect = 3.3
Identities = 22/162 (13%), Positives = 44/162 (27%), Gaps = 14/162 (8%)
Query: 46 PEGLTFDWVNRVLYWTDSQMDTISMANLNDDQPKVIVSKDLVNPRGIVVHPYYRKLFWSD 105
E L + ++ T+ ++ I ++ D + I + G+ +
Sbjct: 34 LENLASA-PDGTIFVTNHEVGEIV--SITPDGNQQIHATVEGKVSGLAFTSNGDLVATGW 90
Query: 106 WNRSGPKIEWSNLDGTDREIFLKAADLKLPNSLAV---------DFRTDELCWVDADSKS 156
S P + DGT + D N + D + +D S
Sbjct: 91 NADSIPVVSLVKSDGTVETLLT-LPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPS 149
Query: 157 LECMTIRNRVRR-KVYSNCTYPFGLSITDEKYYWTDWKTNRI 197
+ R S GL Y ++ + +
Sbjct: 150 GSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNTEKMLL 191
>2wu9_A 3-ketoacyl-COA thiolase 2, peroxisomal; cysteine oxidation, fatty
acid metabolism, oxylipin biosynthesis, plant lipid
metabolism; 1.50A {Arabidopsis thaliana} PDB: 2c7y_A
2c7z_A 2wua_A
Length = 442
Score = 27.5 bits (62), Expect = 4.1
Identities = 4/18 (22%), Positives = 12/18 (66%)
Query: 22 KSSIKRAHLDGKNVEDVI 39
++ I++ +L+ V D++
Sbjct: 64 RALIEKTNLNPSEVGDIV 81
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double
strand DNA repair, protein-DNA CO hydrolase-DNA complex;
HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Length = 1232
Score = 27.6 bits (61), Expect = 4.3
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 179 GLSITDEKYYWTDWKTNRIESANKEGERAPSIAL 212
L T++ Y +K++RIE + G + L
Sbjct: 1160 CLYETEDGLYLLAYKSDRIEGKFQHGFEGAAPIL 1193
>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO,
heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens}
PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A
Length = 640
Score = 27.4 bits (60), Expect = 4.6
Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 13/55 (23%)
Query: 65 MDTISMANLND---------DQPKVIVSKDLV---NPRGIVVHPYYRKLFWSDWN 107
+DTI ++NLN + K V+K+ V P + Y+ + D+N
Sbjct: 49 LDTIDVSNLNRQFLFQKKHVGRSKAQVAKESVLQFYP-KANIVAYHDSIMNPDYN 102
>2ycb_A Beta-CAsp RNAse, cleavage and polyadenylation specificity factor;
hydrolase, KH, metallo-beta-lactamase; 3.10A
{Methanothermobacter thermautotrophicusorganism_taxid}
Length = 636
Score = 27.3 bits (61), Expect = 4.8
Identities = 13/73 (17%), Positives = 30/73 (41%), Gaps = 12/73 (16%)
Query: 14 VYYSSVADK-SSIKRAHLD--GKNVEDVITTNIRSPEGLTFDWVNRVLYWTDSQMDTISM 70
VY + + ++I A + K++ D I +P D ++V + +
Sbjct: 442 VYIDGMIWEANAIHTARPEYLSKDLRDQIFHMGHNP--FISDIFHKVNGMDERRE----- 494
Query: 71 ANLNDDQPKVIVS 83
+ + +P +I+S
Sbjct: 495 --IVEGEPSIILS 505
>2iik_A 3-ketoacyl-COA thiolase, peroxisomal; fatty acid metabolism,
structural genomics, structural genom consortium, SGC,
transferase; 2.55A {Homo sapiens}
Length = 418
Score = 27.1 bits (61), Expect = 5.7
Identities = 3/18 (16%), Positives = 9/18 (50%)
Query: 22 KSSIKRAHLDGKNVEDVI 39
+ +K +L + + D+
Sbjct: 64 TAVLKDVNLRPEQLGDIC 81
>1wte_A ECOO109IR; restriction endonuclease, DNA complex, hydrolase/DNA
complex; 1.90A {Escherichia coli} SCOP: c.52.1.29 PDB:
1wtd_A
Length = 272
Score = 26.6 bits (58), Expect = 7.0
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 94 VHPYYRKLFWSDWNRSGPKIEWSNLDGTDREIFLKAADLKLPNSLAVD 141
VH Y K FWS N + + L+G +R + K AD+K N ++
Sbjct: 195 VHVYAGKEFWSWLNNGEAETQHWVLEGIERAV--KEADIKEKNKDLIE 240
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase,
hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli}
SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Length = 1180
Score = 26.4 bits (58), Expect = 9.3
Identities = 5/16 (31%), Positives = 10/16 (62%)
Query: 182 ITDEKYYWTDWKTNRI 197
+ +YY D+K+N +
Sbjct: 1071 RHEGRYYLLDYKSNWL 1086
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 26.2 bits (57), Expect = 9.3
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 123 REIFLKAADLKLPNSLAVDFRTDELCWVDADSK 155
EI + N+ VD + + DA SK
Sbjct: 181 NEILFSENNDMDNNNDGVDELNKKCTFWDAISK 213
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta
propeller, unknown function; 1.99A {Leptospira
interrogans}
Length = 433
Score = 26.4 bits (58), Expect = 10.0
Identities = 12/78 (15%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
Query: 35 VEDVITTNIRSPEGLTFDWVNRVLYWTDSQMDTISMANLNDDQPKVIVSKDL-VNPRGIV 93
+ + + + L +D + ++Y ++ + IS+ + I D PRG++
Sbjct: 203 YKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTK--LEIRKTDKIGLPRGLL 260
Query: 94 VHPYYRKLFWSDWNRSGP 111
+ ++L+ + ++ S
Sbjct: 261 LSKDGKELYIAQFSASNQ 278
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.420
Gapped
Lambda K H
0.267 0.0754 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,719,180
Number of extensions: 214036
Number of successful extensions: 732
Number of sequences better than 10.0: 1
Number of HSP's gapped: 489
Number of HSP's successfully gapped: 77
Length of query: 232
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 142
Effective length of database: 4,188,903
Effective search space: 594824226
Effective search space used: 594824226
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.3 bits)