RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5751
(232 letters)
>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}
Length = 263
Score = 156 bits (396), Expect = 6e-48
Identities = 88/228 (38%), Positives = 127/228 (55%), Gaps = 3/228 (1%)
Query: 3 IGITVDCVEGQVYYSSVADKSSIKRAHLDGKNVEDVITTNIRSPEGLTFDWVNRVLYWTD 62
IG+ DCV+ VY++ +++ S I RA L G +I ++ SPEG+ D + R ++WTD
Sbjct: 39 IGLAFDCVDKVVYWTDISEPS-IGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTD 97
Query: 63 SQMDTISMANLNDDQPKVIVSKDLVNPRGIVVHPYYRKLFWSDWNRSGPKIEWSNLDGTD 122
SQ+D I +A ++ Q +V+ LVNPRGIV P L+W+DWNR PKIE S++DGT+
Sbjct: 98 SQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN 157
Query: 123 REIFLKAADLKLPNSLAVDFRTDELCWVDADSKSLECMTIRNRVRRKVYSNCTYPFGLSI 182
R I + LPN L D + +LCWVDA + EC+ RRKV YPF ++
Sbjct: 158 RRILAQDNL-GLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTS 216
Query: 183 TDEKYYWTDWKTNRIESANKEGERAPSIALDMMGTTYMYGIAAVPSSC 230
+ Y+TDWKTN + + + + T +YGI S C
Sbjct: 217 YGKNLYYTDWKTNSVIAMDLAISKEMDT-FHPHKQTRLYGITIALSQC 263
Score = 87.2 bits (215), Expect = 3e-21
Identities = 49/216 (22%), Positives = 87/216 (40%), Gaps = 16/216 (7%)
Query: 19 VADKSSIKRAHLDGKNVEDV-----ITTNIRSPEGLTFDWVNRVLYWTDSQMDTISMANL 73
A I+R L+ ++ + + GL FD V++V+YWTD +I A+L
Sbjct: 6 FAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASL 65
Query: 74 NDDQPKVIVSKDLVNPRGIVVHPYYRKLFWSDWNRSGPKIEWSNLDGTDREIFLKAADLK 133
+ +P I+ +DL +P GI + R +FW+D IE + +DGT R +
Sbjct: 66 HGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDR--IEVAKMDGTQRRVLFDTGL-V 122
Query: 134 LPNSLAVDFRTDELCWVDADSKSLE-CMTIRNRVRRKVYSNCTYPFGLSIT----DEKYY 188
P + D L W D + + + + + R++ + +T +
Sbjct: 123 NPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLC 182
Query: 189 WTDWKTNRIESANKEGERAPSIALDMMGTTYMYGIA 224
W D T+R E N + + G Y + +
Sbjct: 183 WVDAGTHRAECLNPAQPGRRKV---LEGLQYPFAVT 215
>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor
{Human (Homo sapiens) [TaxId: 9606]}
Length = 266
Score = 123 bits (310), Expect = 4e-35
Identities = 56/209 (26%), Positives = 111/209 (53%), Gaps = 10/209 (4%)
Query: 3 IGITVDCVEGQVYYSSVADKSSIKRAHLDGKN----VEDVITTNIRSPEGLTFDWVNRVL 58
+ + + ++Y+S ++ + I LD + + VI+ +I++P+GL DW++ +
Sbjct: 33 VALDTEVASNRIYWSDLSQRM-ICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNI 91
Query: 59 YWTDSQMDTISMANLNDDQPKVIVSKDLVNPRGIVVHPYYRKLFWSDWNRSGPKIEWSNL 118
YWTDS + T+S+A+ + K + ++ PR IVV P + ++W+DW + KI+ L
Sbjct: 92 YWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG-TPAKIKKGGL 150
Query: 119 DGTDREIFLKAADLKLPNSLAVDFRTDELCWVDADSKSLECMTIRNRVRRKVYSN---CT 175
+G D + +++ PN + +D + L WVD+ S+ + + R+ + +
Sbjct: 151 NGVDIYSLVT-ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLA 209
Query: 176 YPFGLSITDEKYYWTDWKTNRIESANKEG 204
+PF L++ ++K +WTD I SAN+
Sbjct: 210 HPFSLAVFEDKVFWTDIINEAIFSANRLT 238
Score = 95.4 bits (236), Expect = 2e-24
Identities = 36/214 (16%), Positives = 81/214 (37%), Gaps = 12/214 (5%)
Query: 19 VADKSSIKRAHLDGKNVEDVITTNIRSPEGLTFDWVNRVLYWTDSQMDTISMANLNDD-- 76
++ +++ LD +I N+R+ L + + +YW+D I L+
Sbjct: 6 FTNRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG 64
Query: 77 --QPKVIVSKDLVNPRGIVVHPYYRKLFWSDWNRSGPKIEWSNLDGTDREIFLKAADLKL 134
++S+D+ P G+ V + ++W+D + ++ G R+ + +
Sbjct: 65 VSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLG--TVSVADTKGVKRKTLFR-ENGSK 121
Query: 135 PNSLAVDFRTDELCWVDADSK-SLECMTIRNRVRRKVYS---NCTYPFGLSITDEKYYWT 190
P ++ VD + W D + ++ + + + L + + YW
Sbjct: 122 PRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWV 181
Query: 191 DWKTNRIESANKEGERAPSIALDMMGTTYMYGIA 224
D K + I S + G +I D + + +A
Sbjct: 182 DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLA 215
>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus
[TaxId: 1280]}
Length = 319
Score = 35.4 bits (80), Expect = 0.003
Identities = 28/225 (12%), Positives = 66/225 (29%), Gaps = 18/225 (8%)
Query: 4 GITVDCVEGQVYYSSVADKSSIKRAHLDGKNVEDVITTNIRSPEGLTFDWVNRVLYWTDS 63
G+ D +GQ++ V + + I + + + K ++ ++ +P + R+
Sbjct: 44 GLNFD-RQGQLFLLDVFEGN-IFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLG 101
Query: 64 QMDTISMANLNDDQPKVIVS-----KDLVNPRGIVVHPYYRKLFWSDWNRSGPKIEW-SN 117
+ + + +V F S +
Sbjct: 102 DFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYY 161
Query: 118 LDGTDREIFLKAADLKLPNSLAVDFRTDELCWVDADSKSL-------ECMTIRNRVRRKV 170
+ R + ++ + N +A+ L + + L + +TI+
Sbjct: 162 VSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIP 221
Query: 171 YSNCTYPFGLSIT---DEKYYWTDWKTNRIESANKEGERAPSIAL 212
Y + S D+ Y + R+ NK G I +
Sbjct: 222 YYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKRGYPIGQILI 266
>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 260
Score = 31.0 bits (68), Expect = 0.089
Identities = 34/222 (15%), Positives = 68/222 (30%), Gaps = 10/222 (4%)
Query: 4 GITVDCVEGQVYYSSVADKSSIKRAHLDGKNVEDVITTNIRSPEGLTFDWVNRVLYWTDS 63
G+ VD G VY +S + + + + P+GL D +
Sbjct: 18 GVAVD-SAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGT--VYVTD 74
Query: 64 QMDTISMANLNDDQPKVIVSKDLVNPRGIVVHPYYRKLFWSDWNRSGPKIEWSNLDGTDR 123
+ + + V+ L P G+ V N K+ + T
Sbjct: 75 FNNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVL 134
Query: 124 EIFLKAADLKLPNSLAVDFRTDELCWVDADSKSLECMTIRNRVRRKVYSNCTYPFGL-SI 182
L P+ +AVD + +++ ++ N +++ T P+G+
Sbjct: 135 PFT----GLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVD 190
Query: 183 TDEKYYWTDWKTNRIESANKEGERAPSIALDMMGTTYMYGIA 224
Y T+ TN++ + + G +A
Sbjct: 191 EAGTVYVTEHNTNQVVKLLAGSTTSTVLPFT--GLNTPLAVA 230
Score = 27.1 bits (58), Expect = 1.6
Identities = 10/52 (19%), Positives = 17/52 (32%)
Query: 45 SPEGLTFDWVNRVLYWTDSQMDTISMANLNDDQPKVIVSKDLVNPRGIVVHP 96
SP G+ D V ++ + V+ L P+G+ V
Sbjct: 15 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG 66
Score = 26.0 bits (55), Expect = 4.3
Identities = 7/47 (14%), Positives = 16/47 (34%), Gaps = 1/47 (2%)
Query: 24 SIKRAHLDGKNVEDVITTNIRSPEGLTFDWVNRVLYWTDSQMDTISM 70
+ + + T + +P + D +R +Y D D +
Sbjct: 204 QVVKLLAGSTTSTVLPFTGLNTPLAVAVD-SDRTVYVADRGNDRVVK 249
>d1j5ua_ d.208.1.1 (A:) Hypothetical protein TM1083 {Thermotoga
maritima [TaxId: 2336]}
Length = 127
Score = 28.6 bits (64), Expect = 0.31
Identities = 6/39 (15%), Positives = 8/39 (20%)
Query: 31 DGKNVEDVITTNIRSPEGLTFDWVNRVLYWTDSQMDTIS 69
E + E FD VN +
Sbjct: 41 VLDTEEKEKMYPLEETEDAFFDTVNDWILEISKGWAPWR 79
>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens
[TaxId: 358]}
Length = 295
Score = 28.8 bits (63), Expect = 0.46
Identities = 16/157 (10%), Positives = 32/157 (20%), Gaps = 13/157 (8%)
Query: 47 EGLTFDWVNRVLYWTDSQMDTISMANLNDDQPKVIVSKDLVN------PRGIVVHPYYRK 100
EG TFD + +W + + +L + V + + ++
Sbjct: 21 EGPTFDPASGTAWWFNILERELHELHLASGRKTVHALPFMGSALAKISDSKQLIASDDGL 80
Query: 101 LFWSDWNRSGPKIEWSNLDGTDREIFLKAADLKLPNSLAVDFRTDELCWVDADSKSLECM 160
D +
Sbjct: 81 FLRDTATGVLTLHAELESDLPGNRSNDGRMHPS------GALWIGTMGRKAETGAGSIYH 134
Query: 161 TIRNRVRRKV-YSNCTYPFGLSITDEKYYWTDWKTNR 196
+ +V + + S Y+ D K NR
Sbjct: 135 VAKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNR 171
>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase
(phosphotriesterase, DFP) {Squid (Loligo vulgaris)
[TaxId: 6622]}
Length = 314
Score = 28.5 bits (62), Expect = 0.72
Identities = 10/66 (15%), Positives = 20/66 (30%)
Query: 9 CVEGQVYYSSVADKSSIKRAHLDGKNVEDVITTNIRSPEGLTFDWVNRVLYWTDSQMDTI 68
E + S I+ DG + I P L F + ++ T+ + + +
Sbjct: 233 FDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAV 292
Query: 69 SMANLN 74
Sbjct: 293 WKFEWQ 298
>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli
[TaxId: 562]}
Length = 333
Score = 27.9 bits (60), Expect = 1.0
Identities = 11/100 (11%), Positives = 28/100 (28%), Gaps = 5/100 (5%)
Query: 13 QVYYSSVADKSSIKRAHLDGKNVEDVITT--NIRSPEGLTFDWVNRVLYWTDSQMDTISM 70
Q Y + + I +L+ + + + + R LY +
Sbjct: 4 QTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLA 63
Query: 71 ANLNDDQPKVIVSKDLV---NPRGIVVHPYYRKLFWSDWN 107
+ D + + + + I + +F +N
Sbjct: 64 YRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYN 103
>d1tubb1 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 243
Score = 26.4 bits (58), Expect = 2.7
Identities = 21/95 (22%), Positives = 39/95 (41%), Gaps = 13/95 (13%)
Query: 14 VYYSSVADKSSIKRAHLDGKNVEDVITTNIR-------SPEGLTFDWVNRVLYWTDSQMD 66
V+ S A + K + +G + D + +R +G F + + T S M
Sbjct: 91 VFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESESCDCLQG--FQLTHSLGGGTGSGMG 148
Query: 67 TISMANLNDDQPKVIVSKDLVNP----RGIVVHPY 97
T+ ++ + ++ P I++ V P VV PY
Sbjct: 149 TLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPY 183
>d1l4db_ d.15.5.1 (B:) Streptokinase {Streptococcus equisimilis
[TaxId: 119602]}
Length = 122
Score = 25.0 bits (54), Expect = 4.7
Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 3/88 (3%)
Query: 118 LDGTDREIFLKAADLKLPNSLAVD-FRTDELCWVDADSKSLECMTIRNRVRRKVYSNCTY 176
++GT+++I LK ++ L + A F TD K+ I+ ++ V+SN
Sbjct: 13 VEGTNQDISLKFFEIDLTSRPASKPFATDSGAMPHKLEKADLLKAIQEQLIANVHSN-DD 71
Query: 177 PFGLSITDEKYYWTDWKTNRIESANKEG 204
F + TD ++ A+K+G
Sbjct: 72 YFEVIDFASDATITDRN-GKVYFADKDG 98
>d1wtea_ c.52.1.29 (A:) Restriction endonuclease EcoO109IR
{Escherichia coli [TaxId: 562]}
Length = 272
Score = 25.4 bits (55), Expect = 6.2
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 94 VHPYYRKLFWSDWNRSGPKIEWSNLDGTDREIFLKAADLKLPN 136
VH Y K FWS N + + L+G +R + K AD+K N
Sbjct: 195 VHVYAGKEFWSWLNNGEAETQHWVLEGIERAV--KEADIKEKN 235
>d1w36b3 c.52.1.24 (B:899-1174) Exodeoxyribonuclease V beta chain
(RecB), C-terminal domain {Escherichia coli [TaxId:
562]}
Length = 276
Score = 25.0 bits (54), Expect = 7.7
Identities = 5/14 (35%), Positives = 10/14 (71%)
Query: 184 DEKYYWTDWKTNRI 197
+ +YY D+K+N +
Sbjct: 175 EGRYYLLDYKSNWL 188
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.134 0.420
Gapped
Lambda K H
0.267 0.0418 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 926,157
Number of extensions: 42384
Number of successful extensions: 113
Number of sequences better than 10.0: 1
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 20
Length of query: 232
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 150
Effective length of database: 1,281,736
Effective search space: 192260400
Effective search space used: 192260400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.2 bits)