BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5752
(222 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1YO8|A Chain A, Structure Of The C-Terminal Domain Of Human
Thrombospondin-2
Length = 634
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 52 CNPESLGCNVVKNCHANAECVY--NATSAGYRCQCAQGYVGNGVEC 95
C PE+ + NCH +AEC+Y + + Y+C+C GY G+G+ C
Sbjct: 99 CEPENPCKDKTHNCHKHAECIYLGHFSDPXYKCECQTGYAGDGLIC 144
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 62/159 (38%), Gaps = 34/159 (21%)
Query: 16 PCHPNAQCTS-PDEFNESREQAKCICNFGYTGDGVTECNPESLGCNVVKNCHANAE---C 71
PC P AQC+S PD + C G+ G+G T C V C + ++ C
Sbjct: 10 PCFPGAQCSSFPD-----GSWSCGFCPVGFLGNG-THCEDLDECALVPDICFSTSKVPRC 63
Query: 72 VYNATSAGYRC-QCAQGYVGNGVECHPLKSCLEDRSLCGKDSQGYVGNGVECHPLKSCLE 130
V T G+ C C Y GN L++ ++ + C P C +
Sbjct: 64 V--NTQPGFHCLPCPPRYRGNQPVGVGLEAAKTEKQV--------------CEPENPCKD 107
Query: 131 DRSLCGKDASCVVASQGHF-----HCECNEGFTGNGITC 164
C K A C+ GHF CEC G+ G+G+ C
Sbjct: 108 KTHNCHKHAECIYL--GHFSDPXYKCECQTGYAGDGLIC 144
>pdb|2RHP|A Chain A, The Thrombospondin-1 Polymorphism Asn700ser Associated
With Cornoary Artery Disease Causes Local And
Long-Ranging Changes In Protein Structure
Length = 622
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 52 CNPESLGCNVVKNCHANAECVY--NATSAGYRCQCAQGYVGNGVEC 95
C PE+ + NCH +AEC+Y + + Y+C+C GY G+G+ C
Sbjct: 96 CEPENPCKDKTHNCHKHAECIYLGHFSDPMYKCECQTGYAGDGLIC 141
Score = 30.0 bits (66), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 62/159 (38%), Gaps = 34/159 (21%)
Query: 16 PCHPNAQCTS-PDEFNESREQAKCICNFGYTGDGVTECNPESLGCNVVKNCHANAE---C 71
PC P AQC+S PD + C G+ G+G T C V C + ++ C
Sbjct: 7 PCFPGAQCSSFPD-----GSWSCGFCPVGFLGNG-THCEDLDECALVPDICFSTSKVPRC 60
Query: 72 VYNATSAGYRC-QCAQGYVGNGVECHPLKSCLEDRSLCGKDSQGYVGNGVECHPLKSCLE 130
V T G+ C C Y GN L++ ++ + C P C +
Sbjct: 61 V--NTQPGFHCLPCPPRYRGNQPVGVGLEAAKTEKQV--------------CEPENPCKD 104
Query: 131 DRSLCGKDASCVVASQGHF-----HCECNEGFTGNGITC 164
C K A C+ GHF CEC G+ G+G+ C
Sbjct: 105 KTHNCHKHAECIYL--GHFSDPMYKCECQTGYAGDGLIC 141
>pdb|2BJV|A Chain A, Crystal Structure Of Pspf(1-275) R168a Mutant
Length = 265
Score = 32.0 bits (71), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 16/72 (22%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 132 RSLCGKDASC-VVASQGHFHCECNEGFTGNGITCKPVRKKESDFLLVNQGMFM-----LR 185
R +C +A + ++G F + + + + P+R++ESD +L+ + + ++
Sbjct: 143 RLVCATNADLPAMVNEGTFRADLLDALAFDVVQLPPLRERESDIMLMAEYFAIQMCREIK 202
Query: 186 VPYQPTRTDRGR 197
+P P T+R R
Sbjct: 203 LPLFPGFTERAR 214
>pdb|4IC1|A Chain A, Crystal Structure Of Sso0001
pdb|4IC1|B Chain B, Crystal Structure Of Sso0001
pdb|4IC1|C Chain C, Crystal Structure Of Sso0001
pdb|4IC1|D Chain D, Crystal Structure Of Sso0001
pdb|4IC1|F Chain F, Crystal Structure Of Sso0001
pdb|4IC1|G Chain G, Crystal Structure Of Sso0001
pdb|4IC1|H Chain H, Crystal Structure Of Sso0001
pdb|4IC1|I Chain I, Crystal Structure Of Sso0001
pdb|4IC1|J Chain J, Crystal Structure Of Sso0001
pdb|4IC1|K Chain K, Crystal Structure Of Sso0001
Length = 206
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 28/54 (51%)
Query: 169 KKESDFLLVNQGMFMLRVPYQPTRTDRGRPIINHPNQMLIGLCLSPCVLCVLQY 222
K +D ++ N + + + +R+D+G P+I+H Q+ I L L +L Y
Sbjct: 99 KGRADAIIRNDNGKSIVIEIKTSRSDKGLPLIHHKXQLQIYLWLFSAEKGILVY 152
>pdb|3FBY|A Chain A, The Crystal Structure Of The Signature Domain Of Cartilage
Oligomeric Matrix Protein.
pdb|3FBY|B Chain B, The Crystal Structure Of The Signature Domain Of Cartilage
Oligomeric Matrix Protein.
pdb|3FBY|C Chain C, The Crystal Structure Of The Signature Domain Of Cartilage
Oligomeric Matrix Protein
Length = 551
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 17/69 (24%)
Query: 65 CHANAECVYNATSAGYRCQCAQGYVGNGVECHPLKSCLEDRSLCGKDS--QGYVGNGVEC 122
CH +A+CV + C CA G+ GNG+ LCG+D+ G+ + C
Sbjct: 29 CHEHADCVLERDGS-RSCVCAVGWAGNGI-------------LCGRDTDLDGFPDEKLRC 74
Query: 123 HPLKSCLED 131
P + C +D
Sbjct: 75 -PERQCRKD 82
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 133 SLCGKDASCVVASQGHFHCECNEGFTGNGITC 164
S C + A CV+ G C C G+ GNGI C
Sbjct: 27 SECHEHADCVLERDGSRSCVCAVGWAGNGILC 58
>pdb|1NPE|B Chain B, Crystal Structure Of Nidogen/laminin Complex
Length = 164
Score = 26.9 bits (58), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 60/136 (44%), Gaps = 28/136 (20%)
Query: 39 ICNFGYTGDGVTECNP----------ESLGCNVVKNCHANA----ECVYNATSAGYRC-Q 83
+C+ GY GD + P +++ N V NC+ +C+YN +AG+ C +
Sbjct: 36 LCDDGYFGDPLGSNGPVRLCRPCQCNDNIDPNAVGNCNRLTGECLKCIYN--TAGFYCDR 93
Query: 84 CAQGYVGNGVECHPLKSCLEDRSLCGKDSQGYVGNGVECHPLKS---CLEDRSLCGKDAS 140
C +G+ GN + +P C C + G V C+P+ CL S G+D
Sbjct: 94 CKEGFFGNPLAPNPADKC----KACACNPYGTVQQQSSCNPVTGQCQCLPHVS--GRD-- 145
Query: 141 CVVASQGHFHCECNEG 156
C G+++ + +G
Sbjct: 146 CGTCDPGYYNLQSGQG 161
>pdb|1KLO|A Chain A, Crystal Structure Of Three Consecutive Laminin-Type
Epidermal Growth Factor-Like (Le) Modules Of Laminin
Gamma1 Chain Harboring The Nidogen Binding Site
Length = 162
Score = 26.9 bits (58), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 60/136 (44%), Gaps = 28/136 (20%)
Query: 39 ICNFGYTGDGVTECNP----------ESLGCNVVKNCHANA----ECVYNATSAGYRC-Q 83
+C+ GY GD + P +++ N V NC+ +C+YN +AG+ C +
Sbjct: 34 LCDDGYFGDPLGSNGPVRLCRPCQCNDNIDPNAVGNCNRLTGECLKCIYN--TAGFYCDR 91
Query: 84 CAQGYVGNGVECHPLKSCLEDRSLCGKDSQGYVGNGVECHPLKS---CLEDRSLCGKDAS 140
C +G+ GN + +P C C + G V C+P+ CL S G+D
Sbjct: 92 CKEGFFGNPLAPNPADKC----KACACNPYGTVQQQSSCNPVTGQCQCLPHVS--GRD-- 143
Query: 141 CVVASQGHFHCECNEG 156
C G+++ + +G
Sbjct: 144 CGTCDPGYYNLQSGQG 159
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.463
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,326,533
Number of Sequences: 62578
Number of extensions: 313653
Number of successful extensions: 767
Number of sequences better than 100.0: 54
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 695
Number of HSP's gapped (non-prelim): 92
length of query: 222
length of database: 14,973,337
effective HSP length: 95
effective length of query: 127
effective length of database: 9,028,427
effective search space: 1146610229
effective search space used: 1146610229
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)