RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5752
(222 letters)
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain,
disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB:
2rhp_A*
Length = 634
Score = 61.6 bits (149), Expect = 3e-11
Identities = 39/164 (23%), Positives = 52/164 (31%), Gaps = 35/164 (21%)
Query: 12 ECDT-PCHPNAQCTSPDEFNESREQAKCI-CNFGYTGDGVT-----ECNPESLGCNVVKN 64
C + PC P AQC+ + C C G+ G+G EC C
Sbjct: 5 GCLSNPCFPGAQCS-----SFPDGSWSCGFCPVGFLGNGTHCEDLDECALVPDICFS--- 56
Query: 65 CHANAECVYNATSAGYRC-QCAQGYVGNGVECHPLKSCLEDRSLCGKDSQGYVGNGVECH 123
CV T G+ C C Y GN + C
Sbjct: 57 TSKVPRCV--NTQPGFHCLPCPPRYRGNQPVG--------------VGLEAAKTEKQVCE 100
Query: 124 PLKSCLEDRSLCGKDASCV---VASQGHFHCECNEGFTGNGITC 164
P C + C K A C+ S + CEC G+ G+G+ C
Sbjct: 101 PENPCKDKTHNCHKHAECIYLGHFSDPMYKCECQTGYAGDGLIC 144
Score = 40.0 bits (93), Expect = 4e-04
Identities = 21/85 (24%), Positives = 31/85 (36%), Gaps = 6/85 (7%)
Query: 95 CHPLKSCLEDRS---LCGKDSQGYVGNGVECHPLKSCLEDRSLCGKDASCV--VASQGHF 149
C P C CG G++GNG C L C +C + V +Q F
Sbjct: 11 CFPGAQCSSFPDGSWSCGFCPVGFLGNGTHCEDLDECALVPDICFSTSKVPRCVNTQPGF 70
Query: 150 HCE-CNEGFTGNGITCKPVRKKESD 173
HC C + GN + +++
Sbjct: 71 HCLPCPPRYRGNQPVGVGLEAAKTE 95
Score = 31.1 bits (70), Expect = 0.29
Identities = 19/86 (22%), Positives = 29/86 (33%), Gaps = 7/86 (8%)
Query: 12 ECDT---PCHPNAQCTSPDEFNESREQAKCICNFGYTGDGVTECNP-ESLGC-NVVKNCH 66
C CH +A+C F++ + C C GY GDG+ + G N+ C
Sbjct: 104 PCKDKTHNCHKHAECIYLGHFSDPMYK--CECQTGYAGDGLICGEDSDLDGWPNLNLVCA 161
Query: 67 ANAECVYNATSAGYRCQCAQGYVGNG 92
NA + + Q
Sbjct: 162 TNATYHCIKDNCPHLPNSGQEDFDKD 187
>2bou_A EGF-like module containing mucin-like hormone receptor-like 2
precursor; CD97, CD55, 7TM, calcium-binding, cell
adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB:
2bo2_A 2box_A
Length = 143
Score = 53.3 bits (128), Expect = 2e-09
Identities = 27/165 (16%), Positives = 41/165 (24%), Gaps = 46/165 (27%)
Query: 12 ECDTPCHPNAQCTSPDEFNESREQAKCICNFGYTGDGVT------------ECNPESLGC 59
C C ++ C + C CN G++ EC S
Sbjct: 4 GCARWCPQDSSCVNAT---------ACRCNPGFSSFSEIITTPMETCDDINECATLSKVS 54
Query: 60 NVVKNCHANAECVYNATSAGYRCQCAQGYVGNGVECHPLKSCLEDRSLCGKDSQGYVGNG 119
C ++C N T Y C C+ GY +
Sbjct: 55 -----CGKFSDCW-N-TEGSYDCVCSPGYE-----------------PVSGAKTFKNESE 90
Query: 120 VECHPLKSCLEDRSLCGKDASCVVASQGHFHCECNEGFTGNGITC 164
C + C + C C + G + C C G+
Sbjct: 91 NTCQDVDECSSGQHQCDSSTVCF-NTVGSYSCRCRPGWKPRHGIP 134
Score = 28.2 bits (63), Expect = 1.3
Identities = 17/102 (16%), Positives = 30/102 (29%), Gaps = 25/102 (24%)
Query: 64 NCHANAECVYNATSAGYRCQCAQGYVGNGVECHPLKSCLEDRSLCGKDSQGYVGNGVECH 123
C ++ CV C+C G+ +D + C S+
Sbjct: 8 WCPQDSSCV-----NATACRCNPGFSSFSEIITTPMETCDDINECATLSKVS-------- 54
Query: 124 PLKSCLEDRSLCGKDASCVVASQGHFHCECNEGFTGNGITCK 165
CGK + C ++G + C C+ G+
Sbjct: 55 -----------CGKFSDCW-NTEGSYDCVCSPGYEPVSGAKT 84
>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2
g.3.11.5 PDB: 1h4u_A
Length = 285
Score = 43.6 bits (102), Expect = 2e-05
Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 3/60 (5%)
Query: 64 NCHANAECVYNATSAGYRCQCAQGYVGNGVECHPLKSCLEDR-SLCGKDSQGYVGNGVEC 122
C +AEC + G+ C+C Y GNG +C S + G+ G V
Sbjct: 14 QCSVHAECR--DYATGFCCRCVANYTGNGRQCVAEGSPQRVNGKVKGRIFVGSSQVPVVF 71
Score = 37.4 bits (86), Expect = 0.002
Identities = 15/79 (18%), Positives = 20/79 (25%), Gaps = 9/79 (11%)
Query: 15 TPCHPNAQCT-SPDEFNESREQAKCICNFGYTGDGVTECNPESLGCNVVKNCHANAECVY 73
C +A+C F C C YTG+G C E V
Sbjct: 13 HQCSVHAECRDYATGF-------CCRCVANYTGNGRQ-CVAEGSPQRVNGKVKGRIFVGS 64
Query: 74 NATSAGYRCQCAQGYVGNG 92
+ + YV
Sbjct: 65 SQVPVVFENTDLHSYVVMN 83
Score = 37.0 bits (85), Expect = 0.002
Identities = 13/44 (29%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 126 KSCLEDRSLCGKDASCVVASQGHFHCECNEGFTGNGITCKPVRK 169
++C +R C A C F C C +TGNG C
Sbjct: 6 QTCANNRHQCSVHAECR-DYATGFCCRCVANYTGNGRQCVAEGS 48
>3fby_A COMP, cartilage oligomeric matrix protein; signature domain, cell
adhesion, disease mutation, dwarfism, EGF-like domain,
glycoprotein, secreted; HET: NAG MAN; 3.15A {Homo
sapiens}
Length = 551
Score = 43.0 bits (101), Expect = 4e-05
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 43 GYTGDGVTECNPESLGCNVVKN-CHANAECVYNATSAGYRCQCAQGYVGNGVEC 95
G V + + + + CH +A+CV + C CA G+ GNG+ C
Sbjct: 6 GVPTSPVWWNSAQRFCPDGSPSECHEHADCVLERDGS-RSCVCAVGWAGNGILC 58
Score = 42.6 bits (100), Expect = 4e-05
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Query: 114 GYVGNGVE-CHPLKSCLED-RSLCGKDASCVVASQGHFHCECNEGFTGNGITC 164
G + V + C + S C + A CV+ G C C G+ GNGI C
Sbjct: 6 GVPTSPVWWNSAQRFCPDGSPSECHEHADCVLERDGSRSCVCAVGWAGNGILC 58
Score = 28.7 bits (64), Expect = 1.4
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 5/38 (13%)
Query: 15 TPCHPNAQCTSPDEFNESREQAKCICNFGYTGDGVTEC 52
+ CH +A C E C+C G+ G+G+
Sbjct: 27 SECHEHADC-----VLERDGSRSCVCAVGWAGNGILCG 59
>1n1i_A Merozoite surface protein-1; MSP1, malaria, surface antigen,
glycoprotein, EGF domain, cell adhesion; HET: HIS; 2.40A
{Plasmodium knowlesi strain H} SCOP: g.3.11.4 g.3.11.4
Length = 105
Score = 40.1 bits (93), Expect = 5e-05
Identities = 22/97 (22%), Positives = 30/97 (30%), Gaps = 11/97 (11%)
Query: 14 DTPCHPNAQCTSPDEFNESREQAKCICNFGYTGDGVTECNPESLGCNVVK-NCHANAECV 72
DT NA C + E C G+ G +C P S+ C C AEC
Sbjct: 15 DTNVPENAACYRYLDGTEE-----WRCLLGFKEVG-GKCVPASITCEENNGGCAPEAECT 68
Query: 73 YNATSAGYRCQCAQG---YVGNGVECHPLKSCLEDRS 106
+ C+C + + GV C
Sbjct: 69 MDD-KKEVECKCTKEGSEPLFEGVFCSSSSGPHHHHH 104
Score = 32.8 bits (74), Expect = 0.019
Identities = 19/105 (18%), Positives = 29/105 (27%), Gaps = 30/105 (28%)
Query: 63 KNCHANAECVYNATSAGYRCQCAQGYVGNGVECHPLKSCLEDRSLCGKDSQGYVGNGVEC 122
N NA C Y +C G+ G +C P
Sbjct: 16 TNVPENAAC-YRYLDGTEEWRCLLGFKEVGGKCVPASIT--------------------- 53
Query: 123 HPLKSCLEDRSLCGKDASCVVASQGHFHCECNEG---FTGNGITC 164
C E+ C +A C + + C+C + G+ C
Sbjct: 54 -----CEENNGGCAPEAECTMDDKKEVECKCTKEGSEPLFEGVFC 93
Score = 31.2 bits (70), Expect = 0.087
Identities = 9/33 (27%), Positives = 12/33 (36%)
Query: 135 CGKDASCVVASQGHFHCECNEGFTGNGITCKPV 167
++A+C G C GF G C P
Sbjct: 18 VPENAACYRYLDGTEEWRCLLGFKEVGGKCVPA 50
>1b9w_A Protein (merozoite surface protein 1); MSP-1, candidate malaria
vaccine, surface antigen; 1.80A {Plasmodium cynomolgi}
SCOP: g.3.11.4 g.3.11.4 PDB: 2npr_A
Length = 95
Score = 37.3 bits (86), Expect = 4e-04
Identities = 19/88 (21%), Positives = 26/88 (29%), Gaps = 10/88 (11%)
Query: 14 DTPCHPNAQCTSPDEFNESREQAKCICNFGYTGDGVTECNPESLGCNVVK-NCHANAECV 72
DT NA C + E C + D ++ C C AEC
Sbjct: 9 DTNVPENAACYRYLDGTEE-----WRCLLYFKEDAGKCVPAPNMTCKDKNGGCAPEAECK 63
Query: 73 YNATSAGYRCQCAQG---YVGNGVECHP 97
N C+C + + GV C
Sbjct: 64 MN-DKNEIVCKCTKEGSEPLFEGVFCSH 90
Score = 35.0 bits (80), Expect = 0.003
Identities = 17/107 (15%), Positives = 30/107 (28%), Gaps = 29/107 (27%)
Query: 63 KNCHANAECVYNATSAGYRCQCAQGYVGNGVECHPLKSCLEDRSLCGKDSQGYVGNGVEC 122
N NA C Y +C + + +C P
Sbjct: 10 TNVPENAAC-YRYLDGTEEWRCLLYFKEDAGKCVPA------------------------ 44
Query: 123 HPLKSCLEDRSLCGKDASCVVASQGHFHCECNEGFT---GNGITCKP 166
P +C + C +A C + + C+C + + G+ C
Sbjct: 45 -PNMTCKDKNGGCAPEAECKMNDKNEIVCKCTKEGSEPLFEGVFCSH 90
Score = 29.6 bits (66), Expect = 0.23
Identities = 7/33 (21%), Positives = 11/33 (33%)
Query: 135 CGKDASCVVASQGHFHCECNEGFTGNGITCKPV 167
++A+C G C F + C P
Sbjct: 12 VPENAACYRYLDGTEEWRCLLYFKEDAGKCVPA 44
>1ob1_C Major merozoite surface protein; immune system,
immunoglobulin/complex, immunoglobulin, antib fragment,
MSP1-19, EGF-like domain; 2.90A {Plasmodium falciparum}
SCOP: g.3.11.4 g.3.11.4 PDB: 1cej_A 2flg_A
Length = 99
Score = 36.3 bits (83), Expect = 0.001
Identities = 18/91 (19%), Positives = 32/91 (35%), Gaps = 12/91 (13%)
Query: 14 DTPCHPNAQCTSPDEFNESREQAKCICNFGYTGDGVTECNPESLGCNVVK-NCHANAECV 72
C N+ C + E C C Y +G + CN C A+A+C
Sbjct: 9 KKQCPQNSGCFRHLDEREE-----CKCLLNYKQEGDKCVENPNPTCNENNGGCDADAKCT 63
Query: 73 YNATSAGYR---CQCAQG---YVGNGVECHP 97
+ + + C+C + + +G+ C
Sbjct: 64 EEDSGSNGKKITCECTKPDSYPLFDGIFCSH 94
Score = 30.9 bits (69), Expect = 0.089
Identities = 23/111 (20%), Positives = 33/111 (29%), Gaps = 33/111 (29%)
Query: 63 KNCHANAECVYNATSAGYRCQCAQGYVGNGVECHPLKSCLEDRSLCGKDSQGYVGNGVEC 122
K C N+ C + C+C Y G +C
Sbjct: 10 KQCPQNSGCFRHLDER-EECKCLLNYKQEGDKCVE------------------------- 43
Query: 123 HPLKSCLEDRSLCGKDASCVVASQGH----FHCECNEGFT---GNGITCKP 166
+P +C E+ C DA C G CEC + + +GI C
Sbjct: 44 NPNPTCNENNGGCDADAKCTEEDSGSNGKKITCECTKPDSYPLFDGIFCSH 94
>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell
adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A
1z3g_A
Length = 186
Score = 36.6 bits (83), Expect = 0.003
Identities = 28/172 (16%), Positives = 41/172 (23%), Gaps = 32/172 (18%)
Query: 13 CDTPCHPNAQCT-SPDEFNESREQAKCICNFGYTGDGVTECNP--ESLGCNVVKNCHANA 69
N Q + F C+CN G C E + C
Sbjct: 8 TVDTICXNGQLVQMSNHFX-------CMCNEGLVHLSENTCEEXNECXXETLGXACGEFG 60
Query: 70 ECVYNA---TSAGYRCQCAQGYVGNGVECHPLKSCLED------------------RSLC 108
+C+ N Y C C +GY C + C
Sbjct: 61 QCIENPDPAQVNMYXCGCIEGYTLXEDTCVLDVCQYXNCGESGECIVEYLSEIQSAGCSC 120
Query: 109 GKDSQGYVGNGVECHPLKSCLEDRSLCGKDASCVVASQGHFHCECNEGFTGN 160
+ C + C +G + C+C EGFT +
Sbjct: 121 AIGXVPNPEDEXXCTXTGETACQLXCNTDNEVCX-NVEGVYXCQCMEGFTFD 171
Score = 28.8 bits (63), Expect = 1.1
Identities = 18/120 (15%), Positives = 29/120 (24%), Gaps = 24/120 (20%)
Query: 64 NCHANAECVYNATSAGYRCQCAQGYVGNGVE----------------CHPLKSCLEDRSL 107
N + V S + C C +G V C C+E+
Sbjct: 11 TICXNGQLV--QMSNHFXCMCNEGLVHLSENTCEEXNECXXETLGXACGEFGQCIENPDP 68
Query: 108 CGKDS------QGYVGNGVECHPLKSCLEDRSLCGKDASCVVASQGHFHCECNEGFTGNG 161
+ +GY C + G+ ++ C C G N
Sbjct: 69 AQVNMYXCGCIEGYTLXEDTCVLDVCQYXNCGESGECIVEYLSEIQSAGCSCAIGXVPNP 128
Score = 27.3 bits (59), Expect = 3.6
Identities = 11/84 (13%), Positives = 18/84 (21%), Gaps = 2/84 (2%)
Query: 12 ECDTPCHPNAQCTSPDEFNESREQAKCICNFGYTGDGVTECNPESLGCNVVKNCHANAEC 71
C + +C C + C + N C
Sbjct: 94 CQYXNCGESGECIVEYLSEIQSAGCSCAIGXVPNPEDEXXCTXTGETACQLXCNTDNEVC 153
Query: 72 VYNATSAGYRCQCAQGYVGNGVEC 95
Y CQC +G+ +
Sbjct: 154 X--NVEGVYXCQCMEGFTFDXEXN 175
>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein,
repeat, signal, multigene family, disease mutation,
matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 1emo_A
Length = 82
Score = 33.3 bits (77), Expect = 0.008
Identities = 22/88 (25%), Positives = 30/88 (34%), Gaps = 24/88 (27%)
Query: 12 ECDTP-CHPNAQCT-SPDEFNESREQAKCICNFGYTGDGVT-----ECNPESLGCNVVKN 64
EC P + QC + + +C C FGY G EC+ V N
Sbjct: 7 ECKEPDVCKHGQCINTDGSY-------RCECPFGYILAGNECVDTDECS--------VGN 51
Query: 65 CHANAECVYNATSAGYRCQCAQGYVGNG 92
N C N G+ C C +G+
Sbjct: 52 PCGNGTCK-N-VIGGFECTCEEGFEPGP 77
Score = 29.9 bits (68), Expect = 0.15
Identities = 23/103 (22%), Positives = 33/103 (32%), Gaps = 33/103 (32%)
Query: 64 NCHANAECVYNATSAGYRCQCAQGYVGNGVECHPLKSCLEDRSLCGKDSQGYVGNGVECH 123
+ + +C+ N T YRC+C GY+ G EC C
Sbjct: 12 DVCKHGQCI-N-TDGSYRCECPFGYILAGNECVDTDECSVGNPCG--------------- 54
Query: 124 PLKSCLEDRSLCGKDASCVVASQGHFHCECNEGFTGNGI-TCK 165
+ +C G F C C EGF + TC+
Sbjct: 55 --------------NGTCK-NVIGGFECTCEEGFEPGPMMTCE 82
>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB
domain, disease mutation, extracellular matrix,
polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A
Length = 162
Score = 34.6 bits (80), Expect = 0.009
Identities = 22/125 (17%), Positives = 31/125 (24%), Gaps = 31/125 (24%)
Query: 37 KCICNFGYTGDGVTECNPESLGCNVVKNCHANAECVYNATSAGYRCQCAQGYVGNGVECH 96
C G + C SLG C + C +G+ N
Sbjct: 63 ACSNEIGVGVSKASCC--CSLGKAWGTPCEMCPAVNT--SEYKILCPGGEGFRPNP---- 114
Query: 97 PLKSCLEDRSLCGKDSQGYVGNGVECHPLKSCLEDRSLCGKDASCVVASQGHFHCECNEG 156
V + C E LC + C+ + G F C C G
Sbjct: 115 ---------------------ITVILEDIDECQELPGLC-QGGKCIN-TFGSFQCRCPTG 151
Query: 157 FTGNG 161
+ N
Sbjct: 152 YYLNE 156
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion,
pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
sapiens} PDB: 3k71_B* 3k72_B*
Length = 687
Score = 34.7 bits (79), Expect = 0.023
Identities = 24/155 (15%), Positives = 35/155 (22%), Gaps = 19/155 (12%)
Query: 11 SECDTPCHPNAQCTSPDEFNESREQAKCICNFGYTGDG-VTECNPESLGCNVVKNCHANA 69
+ + C P KC C+ G+ G E E C
Sbjct: 515 DTINCERYNGQVCGGPG--RGLCFCGKCRCHPGFEGSACQCERTTEGCLNPRRVECSGRG 572
Query: 70 ECVYNATSAGYRCQCAQGYVGNGVECHPLKSCLEDRSLCGKDSQGYV----GNGVECHPL 125
C C+C GY C C ++ G C
Sbjct: 573 RCR------CNVCECHSGY--QLPLCQECPGCPSPCGKYISCAECLKFEKGPFGKNCSAA 624
Query: 126 KSCLEDRSLCGKDASCVVASQGHFHCECNEGFTGN 160
L+ + K +C C +T
Sbjct: 625 CPGLQLSNNPVKGRTCKERDS----EGCWVAYTLE 655
Score = 32.4 bits (73), Expect = 0.12
Identities = 33/174 (18%), Positives = 48/174 (27%), Gaps = 26/174 (14%)
Query: 12 ECDTPCHPNAQCTSPD--EFNESREQAKCICNFGYTGDGVTECNPESLGCNVVKNCHANA 69
+CD +EQ+ I G+ D VT C +
Sbjct: 377 DCDGVQINVPITFQVKVTATECIQEQSFVIRALGF-TDIVTVQVLPQCECRCRDQSRDRS 435
Query: 70 ECVYNATSAGYRCQCAQGYVGNGVECH-PLKSCLEDRSLCGKDSQGYV------------ 116
C C+C GY+G EC +S E C KD+ +
Sbjct: 436 LCHGKGFLECGICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGLGDCVCGQC 495
Query: 117 -----GNGVECHPLKSCLEDRSLCGKDASCVVASQGHF-----HCECNEGFTGN 160
+ + C D C + V G C C+ GF G+
Sbjct: 496 LCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFCGKCRCHPGFEGS 549
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD
finger, cell adhesion, innate immunity, extracellular MA
protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Length = 143
Score = 32.0 bits (73), Expect = 0.074
Identities = 15/101 (14%), Positives = 29/101 (28%), Gaps = 24/101 (23%)
Query: 65 CHANAECVYNATSAGYRCQCAQGYVGNGVECHPLKSCLEDRSLCGKDSQGYVGNGVECHP 124
C C+ + C+C G+ +C + + + C P
Sbjct: 8 CENGGICLPGLADGSFSCECPDGFTD--------PNCSSVVEVASDEEEPTSAG--PCTP 57
Query: 125 LKSCLEDRSLCGKDASCVVASQ------GHFHCECNEGFTG 159
+ C +C ++ + C+C GF G
Sbjct: 58 --------NPCHNGGTCEISEAYRGDTFIGYVCKCPRGFNG 90
Score = 28.9 bits (65), Expect = 0.78
Identities = 20/92 (21%), Positives = 27/92 (29%), Gaps = 16/92 (17%)
Query: 5 PIRFSLSECDT-PCHPNAQCTSPDEFNESREQA-KCICNFGYTGDG----VTECNPESLG 58
S C PCH C + + C C G+ G + EC E
Sbjct: 47 EEPTSAGPCTPNPCHNGGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQHNINECEVEP-- 104
Query: 59 CNVVKNCHANAECVYNATSAGYRCQCAQGYVG 90
C C A Y C+C ++G
Sbjct: 105 ------CKNGGICT--DLVANYSCECPGEFMG 128
>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}
Length = 324
Score = 32.5 bits (74), Expect = 0.090
Identities = 15/80 (18%), Positives = 18/80 (22%), Gaps = 21/80 (26%)
Query: 12 ECDTPCHPNAQCTSPDEFNESREQAKCICNFGYTGDGVTECNPESLGCNVVKNCHANAEC 71
EC C C C C G+ G + C C
Sbjct: 150 ECPGGCRNGGFCNERRI---------CECPDGFHGPHCEKALCTP-------RCMNGGLC 193
Query: 72 VYNATSAGYRCQCAQGYVGN 91
V C C G+ G
Sbjct: 194 V-----TPGFCICPPGFYGV 208
Score = 29.0 bits (65), Expect = 1.2
Identities = 21/82 (25%), Positives = 30/82 (36%), Gaps = 21/82 (25%)
Query: 9 SLSECDTPCHPNAQCTSPDEFNESREQAKCICNFGYTGDGVTECNPESLGCNVVKNCHAN 68
+S+C PC +C KC C+ GY GD C+ C A+
Sbjct: 243 EISKCPQPCRNGGKCIGKS---------KCKCSKGYQGD---LCSKPVCEPG----CGAH 286
Query: 69 AECVYNATSAGYRCQCAQGYVG 90
C +CQC +G+ G
Sbjct: 287 GTCH-----EPNKCQCQEGWHG 303
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase,
hydrolase-lipid binding P complex; 3.30A {Homo sapiens}
PDB: 3p5c_L
Length = 400
Score = 32.1 bits (72), Expect = 0.11
Identities = 14/94 (14%), Positives = 20/94 (21%), Gaps = 3/94 (3%)
Query: 62 VKNCHANAECVYNATSAGYRCQCAQGYVGNGVECHPLKSCLEDRSLCGKDSQGYVGN-GV 120
N + C GY C C G+ +D C + G
Sbjct: 5 DNNGGCSHVCND--LKIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKC 62
Query: 121 ECHPLKSCLEDRSLCGKDASCVVASQGHFHCECN 154
+C C S + H
Sbjct: 63 QCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRK 96
Score = 26.7 bits (58), Expect = 7.7
Identities = 20/132 (15%), Positives = 37/132 (28%), Gaps = 18/132 (13%)
Query: 12 ECDT-PCHPNAQCTSPDEFNESREQAKCICNFGYTGDGVTECNPESLGCNVVKNCHANAE 70
EC + C + + +C+C G+ C C
Sbjct: 2 ECLDNNGGCSHVCN------DLKIGYECLCPDGFQLVAQRRCEDID-------ECQDPDT 48
Query: 71 C--VYNATSAGYRCQCAQGYV--GNGVECHPLKSCLEDRSLCGKDSQGYVGNGVECHPLK 126
C + GY+CQC +G+ + C + S + + + E L
Sbjct: 49 CSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLI 108
Query: 127 SCLEDRSLCGKD 138
L + +
Sbjct: 109 PNLRNVVALDTE 120
>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease
mutation, craniosynostosis, extracellular matrix,
fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}
Length = 147
Score = 30.8 bits (70), Expect = 0.15
Identities = 25/131 (19%), Positives = 40/131 (30%), Gaps = 20/131 (15%)
Query: 37 KCICNFGYTGDGVTECNPESLGCNVVKNCHANAECVYNATSAGYRCQCAQGYVGNGVEC- 95
C C+ T D C + T RC+ +C
Sbjct: 25 ICECSSESTLDPTK------------TICIETIKGTCWQTVIDGRCEININGATLKSQCC 72
Query: 96 HPLKSCLEDRSLCGKDS----QGYVG-NGVECHPLKSCLEDRSLCGKDASCVVASQGHFH 150
L + + +GY G +C + C +C K+ CV ++G F
Sbjct: 73 SSLGAAWGSPCTLCQVDPICGKGYSRIKGTQCEDIDECEVFPGVC-KNGLCVN-TRGSFK 130
Query: 151 CECNEGFTGNG 161
C+C G T +
Sbjct: 131 CQCPSGMTLDA 141
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded
beta-propeller, six- bladed beta-propeller; 1.79A
{Geobacillus stearothermophilus} SCOP: b.68.10.1
Length = 323
Score = 31.3 bits (72), Expect = 0.17
Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 19/50 (38%)
Query: 170 KESDF---LLV-----------NQG-MFMLRVPYQ-P--TRTDRGRPIIN 201
K++D +L N+G V ++ P D G+ I N
Sbjct: 36 KDTDRLLAMLEMNTKDVLLLFTNKGNYLYCPV-HELPDIRWKDLGQHIAN 84
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta
propeller, protein binding-antagonist complex; HET: NAG
FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Length = 318
Score = 31.2 bits (70), Expect = 0.26
Identities = 9/33 (27%), Positives = 12/33 (36%), Gaps = 2/33 (6%)
Query: 71 CVYNATSAGYRCQCAQGYV--GNGVECHPLKSC 101
C+ + Y+C C G NG C S
Sbjct: 281 CLMSPVKPFYQCACPTGVKLLENGKTCKDGNSH 313
>1aut_L Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 3f6u_L*
Length = 114
Score = 29.7 bits (67), Expect = 0.26
Identities = 22/94 (23%), Positives = 30/94 (31%), Gaps = 16/94 (17%)
Query: 12 ECDTPCHPNAQCT-SPDEFNESREQAKCICNFGYTGDGVTECNPESLGCN-VVKNCHANA 69
C + C + C F C C G+ G C E N + N
Sbjct: 17 PCASLCCGHGTCIDGIGSF-------SCDCRSGWEGRF---CQREVSFLNCSLDNGGCTH 66
Query: 70 ECVYNATSAGYRCQCAQGYVG--NGVECHPLKSC 101
C+ RC CA GY + ++CHP
Sbjct: 67 YCL--EEVGWRRCSCAPGYKLGDDLLQCHPAVKF 98
Score = 27.4 bits (61), Expect = 1.9
Identities = 19/121 (15%), Positives = 30/121 (24%), Gaps = 33/121 (27%)
Query: 49 VTECNPESLGCNVVKNCHANAECVYNATSAGYRCQCAQGYVGNGVECHPLKSCLEDRSLC 108
+C L C + C+ + C C G+ G + C + S
Sbjct: 6 GDQCLVLPLEHPCASLCCGHGTCID--GIGSFSCDCRSGWEG--------RFCQREVSFL 55
Query: 109 GKDSQGYVGNGVECHPLKSCLEDRSLCGKDASCVVASQGHFHCECNEGFTG--NGITCKP 166
C G C+ G C C G+ + + C P
Sbjct: 56 ------------NCSL--------DNGGCTHYCL-EEVGWRRCSCAPGYKLGDDLLQCHP 94
Query: 167 V 167
Sbjct: 95 A 95
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex,
beta propeller, cholesterol clearance, PCSK
autocatalytic cleavage; 7.01A {Homo sapiens}
Length = 791
Score = 31.0 bits (69), Expect = 0.37
Identities = 27/190 (14%), Positives = 59/190 (31%), Gaps = 6/190 (3%)
Query: 17 CHPNAQCTSPDEFNESREQAKCICNFGYTGDGVTECNPESLGCNVVKNCHANAECVYNAT 76
H + QC + + ++ C+ G +C+ + K C+ +C +
Sbjct: 246 IHGSRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKCHS-GECITLDKVCNMARDCRDWSD 304
Query: 77 SAGYRCQCAQGYVGNGVECHPLKSCLEDRSLCGKDSQGYVGNGVECHPLKSCLEDRSLCG 136
C + NG C + + L+ C + C + C +
Sbjct: 305 EPIKECGTNECLDNNGG-CSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQD----PD 359
Query: 137 KDASCVVASQGHFHCECNEGFTGNGITCKPVRKKESDFLLVNQGMFMLRVPYQPTRTDRG 196
+ V +G + C+C EGF + T +L + ++ +
Sbjct: 360 TCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSL 419
Query: 197 RPIINHPNQM 206
P + + +
Sbjct: 420 IPNLRNVVAL 429
Score = 29.0 bits (64), Expect = 1.5
Identities = 20/143 (13%), Positives = 39/143 (27%), Gaps = 7/143 (4%)
Query: 38 CICNFGYTGDGVTECNPESLGCNVVKNCHANAECVYNATSAGYRCQCAQGYVGNGVECHP 97
C G +CN + + C + +C + RC+ + G+ C
Sbjct: 138 ASCPVLTCGPASFQCNSSTC-IPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSA 196
Query: 98 L------KSCLEDRSLCGKDSQGYVGNGVECHPLKSCLEDRSLCGKDASCVVASQGHFHC 151
C+ C + E + +C D C + Q
Sbjct: 197 FEFHCLSGECIHSSWRCDGGPDCKDKSDEENCAVATCRPDEFQCSDGNCIHGSRQCDREY 256
Query: 152 ECNEGFTGNGITCKPVRKKESDF 174
+C + G + + + F
Sbjct: 257 DCKDMSDEVGCVNVTLCEGPNKF 279
Score = 27.9 bits (61), Expect = 3.1
Identities = 27/145 (18%), Positives = 41/145 (28%), Gaps = 7/145 (4%)
Query: 27 DEFNESREQAKCICNFGYTGDGVTECNPESLGCNVVKNCHANA---ECVYNATSAGYRCQ 83
DE E+ C G V C P+ C+ +C + C S +
Sbjct: 54 DESQETCLSVTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGCPPKTCSQDE-FR 112
Query: 84 CAQGY-VGNGVECHPLKSCLEDRSLCGKDSQGYVGNGVECHPLKSCLEDRSLCGKDASCV 142
C G + C + CL+ +C+ +C+ C D C
Sbjct: 113 CHDGKCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNS-STCIPQLWACDNDPDCE 171
Query: 143 VASQ-GHFHCECNEGFTGNGITCKP 166
S C F G+ C
Sbjct: 172 DGSDEWPQRCRGLYVFQGDSSPCSA 196
>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome,
connective tissue, extracellular matrix, structural
protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
Length = 86
Score = 28.4 bits (64), Expect = 0.58
Identities = 22/108 (20%), Positives = 33/108 (30%), Gaps = 30/108 (27%)
Query: 59 CNVVKNCHANAECVYNATSAGYRCQCAQGYVGNGVECHPLKSCLEDRSLCGKDSQGYVGN 118
C + + +CV N T + C+C +GY +
Sbjct: 6 CRISPDLCGRGQCV-N-TPGDFECKCDEGYESGFM------------------------M 39
Query: 119 GVECHPLKSCLEDRSLCGKDASCVVASQGHFHCECNEGFT--GNGITC 164
C + C D LC C ++G + CEC G N C
Sbjct: 40 MKNCMDIDECQRDPLLCR-GGVC-HNTEGSYRCECPPGHQLSPNISAC 85
Score = 25.7 bits (57), Expect = 5.0
Identities = 16/63 (25%), Positives = 22/63 (34%), Gaps = 17/63 (26%)
Query: 38 CICNFGYTGDGVT--------ECNPESLGCNVVKNCHANAECVYNATSAGYRCQCAQGYV 89
C C+ GY + EC + L C C N T YRC+C G+
Sbjct: 27 CKCDEGYESGFMMMKNCMDIDECQRDPLLC-------RGGVCH-N-TEGSYRCECPPGHQ 77
Query: 90 GNG 92
+
Sbjct: 78 LSP 80
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein;
signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG;
1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Length = 628
Score = 30.2 bits (67), Expect = 0.66
Identities = 7/38 (18%), Positives = 12/38 (31%), Gaps = 2/38 (5%)
Query: 135 CGKDASCVVASQGHFHCECNEGFT--GNGITCKPVRKK 170
G C+V G C C + ++C +
Sbjct: 587 GGCSHICLVKGDGTTRCSCPMHLVLLQDELSCGGTKHH 624
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G,
beta-propeller, protein binding; 3.30A {Rattus
norvegicus}
Length = 386
Score = 29.7 bits (66), Expect = 0.76
Identities = 11/45 (24%), Positives = 16/45 (35%), Gaps = 4/45 (8%)
Query: 62 VKNCHANAECVYNATSAGYRCQCAQGYV--GNGVECHPLKSCLED 104
V N +C +C C GY +G C + C E+
Sbjct: 8 VNNGGCAQKCQM--IRGAVQCTCHTGYRLTEDGRTCQDVNECAEE 50
>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A
{Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*
Length = 195
Score = 29.3 bits (66), Expect = 0.76
Identities = 29/166 (17%), Positives = 44/166 (26%), Gaps = 26/166 (15%)
Query: 13 CDTPCHPNAQCTSPDEFNESREQAKCICNFGYTGDGVTECNPESLGCNVVKNCHANAECV 72
+ C S +E E E + F +C C +C
Sbjct: 8 LERECMEET--CSYEEAREVFEDSDKTNEFWNKYKDGDQCET--------SPCQNQGKCK 57
Query: 73 YNATSAGYRCQCAQGYVGNGVECHPLKSCLEDRSLCGKDSQGYVGN----------GVEC 122
Y C C +G+ G E K C D C + + +
Sbjct: 58 DGL--GEYTCTCLEGFEGKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADN 115
Query: 123 HPLKSCLE-DRSLCGKDASCVVASQGHFHCECNEGFTGNGITCKPV 167
K+C+ CGK + + G + IT KP
Sbjct: 116 G--KACIPTGPYPCGKQTLERR-KRSVAQATSSSGEAPDSITWKPY 158
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta
pinwheel, DNA wrapping, isomerase, DNA bindng protein;
HET: DNA; 2.60A {Escherichia coli}
Length = 307
Score = 29.4 bits (67), Expect = 0.87
Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 21/61 (34%)
Query: 159 GNGITCKPVRKKESDF---LLV-----------NQG-MFMLRVPYQ-P--TRTDRGRPII 200
G G R KE DF LLV ++G ++ ++V YQ P TR RGRPI+
Sbjct: 30 GKGK--SAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKV-YQLPEATRGARGRPIV 86
Query: 201 N 201
N
Sbjct: 87 N 87
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA
C-terminal domain, DNA wrapping, beta-strand-bearing
proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas
campestris PV}
Length = 370
Score = 29.1 bits (66), Expect = 0.95
Identities = 18/50 (36%), Positives = 21/50 (42%), Gaps = 19/50 (38%)
Query: 170 KESDF---LLV-----------NQGM-FMLRVPYQ-P--TRTDRGRPIIN 201
KE DF L + + G F L V +Q P RGRPIIN
Sbjct: 43 KEEDFIDQLWLVNTHDTLLTFTSSGKVFWLPV-HQLPEAGSNARGRPIIN 91
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell
adhesion, DI mutation, glycoprotein, HOST-virus
interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo
sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Length = 690
Score = 29.3 bits (65), Expect = 1.2
Identities = 28/168 (16%), Positives = 45/168 (26%), Gaps = 28/168 (16%)
Query: 20 NAQCTSPDEFNESREQAKCICNFGYTGDGVTECNPESLGCNVVKNCHANAE--------- 70
+ F+ + C + +SL V +C +
Sbjct: 388 GLKIGDTVSFSIEAKVRGCPQEKEKSFTIKPVGFKDSLIVQVTFDCDCACQAQAEPNSHR 447
Query: 71 -CVYNATSAGYRCQCAQGYVGNGVECHPLKSCLEDRSLCGKDSQGYV--GNGV------E 121
N T C+C G++G+ EC + C V G
Sbjct: 448 CNNGNGTFECGVCRCGPGWLGSQCECSEEDYRPSQQDECSPREGQPVCSQRGECLCGQCV 507
Query: 122 CHP-------LKSCLEDRSLCGKDASCVVASQGH---FHCECNEGFTG 159
CH K C D C + + + G C C+ +TG
Sbjct: 508 CHSSDFGKITGKYCECDDFSCVRYKGEMCSGHGQCSCGDCLCDSDWTG 555
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller,
beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia
burgdorferi} SCOP: b.68.10.1
Length = 312
Score = 29.0 bits (66), Expect = 1.3
Identities = 8/50 (16%), Positives = 18/50 (36%), Gaps = 19/50 (38%)
Query: 170 KESDF---LLV-----------NQG-MFMLRVPYQ-P--TRTDRGRPIIN 201
+ D L N+G ++++ Y+ +R +G+ I
Sbjct: 44 NDGDEIVIALCVNTHDYLFMISNEGKLYLINA-YEIKDSSRASKGQNISE 92
>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo
sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A
Length = 91
Score = 27.4 bits (61), Expect = 1.5
Identities = 12/55 (21%), Positives = 18/55 (32%), Gaps = 5/55 (9%)
Query: 36 AKCICNFGYTGDGVTECNPESLGCNVVKNCHANAECVYNATSAGYRCQCAQGYVG 90
C CN G C+ + C C + + CQC +G+ G
Sbjct: 32 EYCWCNSGRAQ-----CHSVPVKSCSEPRCFNGGTCQQALYFSDFVCQCPEGFAG 81
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase,
isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Length = 327
Score = 28.6 bits (65), Expect = 1.7
Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 19/50 (38%)
Query: 170 KESDF---LLV-----------NQG-MFMLRVPYQ-P--TRTDRGRPIIN 201
K+ D V QG ++ + Y P +RT RG+ + N
Sbjct: 39 KQDDIVAHFFVCSTHDLILFFTTQGRVYRAKA-YDLPEASRTARGQHVAN 87
>2ddu_A Reelin; beta-jelly-roll, signaling protein; 2.05A {Mus musculus}
Length = 387
Score = 28.5 bits (62), Expect = 1.9
Identities = 11/82 (13%), Positives = 19/82 (23%), Gaps = 10/82 (12%)
Query: 11 SECDTPCHPNAQCTSPDEFNESREQAKCICNFGYTGDGVTECNPESLGCNVVKNCHANAE 70
C + C + C S C C+ GYT T + +
Sbjct: 192 EPCPSYCSGHGDCIS----------GVCFCDLGYTAAQGTCVSNTPNHSEMFDRFEGKLS 241
Query: 71 CVYNATSAGYRCQCAQGYVGNG 92
++ + G
Sbjct: 242 PLWYKITGGQVGTGCGTLNDGR 263
Score = 27.7 bits (60), Expect = 3.8
Identities = 9/86 (10%), Positives = 17/86 (19%), Gaps = 1/86 (1%)
Query: 44 YTGDGVTECNPESLGCNVVKNCHANAECVYNATSAGYRCQCAQGYVGNGVECHPLKSCLE 103
+ P V + + C + C C GY C
Sbjct: 171 IQESSSQKNVPPFGLDGVYISEPCPSYCSGHGDCISGVCFCDLGYTAAQGTCVSNTPNHS 230
Query: 104 DRSLCGKDSQGYVGNGVE-CHPLKSC 128
+ + + + C
Sbjct: 231 EMFDRFEGKLSPLWYKITGGQVGTGC 256
>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain,
blood coagulation, polymorphism, glycoprotein,
hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB:
1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A*
1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B*
2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...
Length = 134
Score = 27.3 bits (61), Expect = 2.4
Identities = 19/80 (23%), Positives = 27/80 (33%), Gaps = 12/80 (15%)
Query: 12 ECDT-PCHPNAQCTSPDEFNESREQAKCICNFGYTGDGVTECNPESLGCNVVKNCHANAE 70
+C+T PC +C D E C C G+ G C + + N +
Sbjct: 44 QCETSPCQNQGKCK--DGLGEYT----CTCLEGFEGKN---CELFTRKLCSLDNGDCDQF 94
Query: 71 CVYNATSAGYRCQCAQGYVG 90
C C CA+GY
Sbjct: 95 CH--EEQNSVVCSCARGYTL 112
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.1 bits (62), Expect = 2.6
Identities = 13/42 (30%), Positives = 16/42 (38%), Gaps = 10/42 (23%)
Query: 114 GYVGNGVECHP-------LKSCL---EDRSLCGKDASCVVAS 145
GYV + VE L CL E+ L G D + A
Sbjct: 66 GYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAK 107
>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB:
1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A
Length = 53
Score = 25.5 bits (56), Expect = 2.9
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 65 CHANAECVYNATSAGYRCQCAQGYVG 90
C C++ + Y C C GY G
Sbjct: 14 CLNGGVCMHIESLDSYTCNCVIGYSG 39
>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular,
developmental protein, notch signaling pathway, EGF,
DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB:
2kb9_A
Length = 169
Score = 27.3 bits (61), Expect = 3.1
Identities = 22/145 (15%), Positives = 38/145 (26%), Gaps = 51/145 (35%)
Query: 15 TPCHPNAQCTSPDEFNESREQAKCICNFGYTGDGVTECNPESLGCNVVKNCHANAECVYN 74
+ C P + C C +G+ G +C P + C
Sbjct: 71 GCSPKHGSCKLPGD---------CRCQYGWQGLYCDKCIPH--------PGCVHGICN-- 111
Query: 75 ATSAGYRCQCAQGYVGNGVECHPLKSCLEDRSLCGKDSQGYVGNGVECHPLKSCLEDRSL 134
++C C + G + C +D + C
Sbjct: 112 ---EPWQCLCETNWGG--------QLCDKDLNYC---------------------GTHQP 139
Query: 135 CGKDASCVVASQGHFHCECNEGFTG 159
C +C + C C EG++G
Sbjct: 140 CLNGGTCSNTGPDKYQCSCPEGYSG 164
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY
acidic protein fold, fibronectin type III fold, hormone-
growth factor complex; NMR {Homo sapiens}
Length = 680
Score = 27.6 bits (60), Expect = 3.6
Identities = 18/101 (17%), Positives = 31/101 (30%), Gaps = 19/101 (18%)
Query: 11 SECDTPCH-----PNAQCTSPDEFNESREQAKCICNFGYTGDGVTE--------CNPESL 57
S+C PC QC S E ++ +C+ + + +
Sbjct: 61 SKCLEPCKESGDLRKHQCQSFCEPLFPKKSYECLTSCEFLKYILLVKQGDCPAPEKASGF 120
Query: 58 GCNVVKNCHANAECVYNATSAGYRCQCAQGYVGNGVECHPL 98
V++C + EC S +C C+ G L
Sbjct: 121 AAACVESCEVDNEC-----SGVKKC-CSNGCGHTCQVPKTL 155
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET:
NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Length = 423
Score = 27.7 bits (61), Expect = 3.7
Identities = 19/83 (22%), Positives = 26/83 (31%), Gaps = 11/83 (13%)
Query: 11 SECDTPCHPNAQCTSPDEFNESREQAKCICNFGYTGDG-VTECNPESLGCNVVKNCHANA 69
+ T C N C + +CIC G+ G C + G + C
Sbjct: 199 NHLCTACMNNGVC--------HEDTGECICPPGFMGRTCEKACELHTFGRTCKERCSGQE 250
Query: 70 ECVYNAT--SAGYRCQCAQGYVG 90
C Y C CA G+ G
Sbjct: 251 GCKSYVFCLPDPYGCSCATGWKG 273
>3t5o_A Complement component C6; macpf, MAC, membrane attack complex,
innate IMMU system, blood, membrane, cytolysin, immune
SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens}
PDB: 4a5w_B* 4e0s_B*
Length = 913
Score = 27.5 bits (60), Expect = 3.8
Identities = 18/148 (12%), Positives = 30/148 (20%), Gaps = 24/148 (16%)
Query: 13 CDTPCHPNAQCTSP-DEFNESREQAKCICNFGYTGDGVTECN----------PESLGCNV 61
C P +P E + C G+ G + SL C
Sbjct: 683 CIKPVVQEVLTITPFQRLYRIGESIELTCPKGFVVAGPSRYTCQGNSWTPPISNSLTCEK 742
Query: 62 VKNCHANAECVYNATSAGYRCQCAQGY-------------VGNGVECHPLKSCLEDRSLC 108
C +G C C + + +C C
Sbjct: 743 DTLTKLKGHCQLGQKQSGSECICMSPEEDCSHHSEDLCVFDTDSNDYFTSPACKFLAEKC 802
Query: 109 GKDSQGYVGNGVECHPLKSCLEDRSLCG 136
+ Q + + C +
Sbjct: 803 LNNQQLHFLHIGSCQDGRQLEWGLERTR 830
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane,
secreted, protease, PALM hydrolase, developmental
protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo
sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Length = 463
Score = 27.6 bits (61), Expect = 3.9
Identities = 10/42 (23%), Positives = 16/42 (38%), Gaps = 9/42 (21%)
Query: 10 LSECDTPCHPNAQCTSPDEFNESREQAKCICNFGYTGDGVTE 51
++C+ C C P+ KC+C GY G +
Sbjct: 423 TAKCEPACRHGGVCVRPN---------KCLCKKGYLGPQCEQ 455
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo
sapiens}
Length = 426
Score = 27.1 bits (59), Expect = 4.7
Identities = 20/98 (20%), Positives = 24/98 (24%), Gaps = 21/98 (21%)
Query: 14 DTPCHPNAQCTSPDEFNESREQAKCICNFGYTGDGVTECNPESLGCNVVKNCHANAECVY 73
P P + P C + G C+ E L C CH
Sbjct: 335 GRPWSPGSYLPIPKGA-------ANACIPSISSIGTNVCDNELLHCQNGGTCH------- 380
Query: 74 NATSAGYRCQCAQGYVG---NGVECHPLKSCLEDRSLC 108
RC C Y G + C SC D
Sbjct: 381 ----NNVRCLCPAAYTGILCEKLRCEEAGSCGSDSGQG 414
>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant
complex, antifibrinolytic complex, hydrolase-hydrolase
inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A
1adx_A 2adx_A
Length = 118
Score = 25.8 bits (57), Expect = 6.1
Identities = 20/114 (17%), Positives = 25/114 (21%), Gaps = 18/114 (15%)
Query: 64 NCHANAECVYNATSAGYRCQCAQGYVGNGVECHPLKSCLEDRSLCGKDSQGYVGNGV--- 120
+ +C Y C CA+G+ E H + N
Sbjct: 9 RANCEYQCQ-PLDQTSYLCVCAEGFAPIPHEPH----RCQMFCNQTACPADCDPNTQASC 63
Query: 121 ECHP------LKSCLEDRSLCGKDASCV---VASQGHFHCECNEGFTGNGITCK 165
EC C D C C G F C C G
Sbjct: 64 ECPEGYILDDGFIC-TDIDECENGGFCSGVCHNLPGTFECICGPDSALAGQIGT 116
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET:
NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Length = 1245
Score = 27.1 bits (59), Expect = 6.5
Identities = 14/118 (11%), Positives = 29/118 (24%), Gaps = 13/118 (11%)
Query: 38 CICNFGYTGDGVTECNPESLGCNVVKNCHANAECVYNATSAGYRCQCAQGYVGNGVECHP 97
I + + + + + G NG C
Sbjct: 153 WIRDVRVQSSLALPVDSGEVKLDDEPPNSGGGSPCEAG------EEGEGGVCLNGGVCSV 206
Query: 98 LKSCLEDRSLCGKDSQGYVGNGVECHPLKSCLEDRSLCGKDASCVVASQGHFHCECNE 155
++D+++C G+ G + + G + C SQ +E
Sbjct: 207 ----VDDQAVCDCSRTGFRG---KDCSQGKEEYIATFKGSEYFCYDLSQNPIQSSSDE 257
>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell
adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A
Length = 217
Score = 26.5 bits (58), Expect = 6.5
Identities = 21/125 (16%), Positives = 33/125 (26%), Gaps = 23/125 (18%)
Query: 59 CNVVKNCHANAECVYNATSAGYRCQCAQGYVGNGVECHPLKSCLEDRS------------ 106
C + C C+C GY+G EC ++
Sbjct: 86 CRCRDQSRDRSLCHGKGFLECGICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIIC 145
Query: 107 ------LCGKDSQGYVGNGVECHPLKSCLEDRSLCGKDASCVVASQGHFH-----CECNE 155
+CG+ + + C D C + V G C C+
Sbjct: 146 SGLGDCVCGQCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFCGKCRCHP 205
Query: 156 GFTGN 160
GF G+
Sbjct: 206 GFEGS 210
>2vj3_A Neurogenic locus notch homolog protein 1; transcription,
metal-binding, transmembrane, developmental protein,
notch signaling pathway; 2.60A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A
2rr2_A*
Length = 135
Score = 25.6 bits (57), Expect = 7.8
Identities = 22/84 (26%), Positives = 32/84 (38%), Gaps = 21/84 (25%)
Query: 12 ECDT-PCHPNAQCTSPDEFNESREQAKCICNFGYTGDG----VTECNPESLGCNVVKNCH 66
EC + PC +A C D+ + +CIC GY G EC C
Sbjct: 47 ECVSNPCQNDATCL--DQIG----EFQCICMPGYEGVHCEVNTDECASSP--------CL 92
Query: 67 ANAECVYNATSAGYRCQCAQGYVG 90
N C+ ++C+C G+ G
Sbjct: 93 HNGRCLDKI--NEFQCECPTGFTG 114
Score = 25.6 bits (57), Expect = 8.2
Identities = 21/80 (26%), Positives = 28/80 (35%), Gaps = 22/80 (27%)
Query: 16 PCHPNAQCT-SPDEFNESREQAKCICNFGYTGD----GVTECNPESLGCNVVKNCHANAE 70
PC +C + F +C C GYTG V EC C +A
Sbjct: 14 PCEHAGKCINTLGSF-------ECQCLQGYTGPRCEIDVNECVS--------NPCQNDAT 58
Query: 71 CVYNATSAGYRCQCAQGYVG 90
C+ ++C C GY G
Sbjct: 59 CL--DQIGEFQCICMPGYEG 76
>2e26_A Reelin, reeler protein; signaling protein; HET: NAG BMA; 2.00A {Mus
musculus} PDB: 3a7q_A*
Length = 725
Score = 26.5 bits (57), Expect = 9.0
Identities = 7/68 (10%), Positives = 15/68 (22%)
Query: 42 FGYTGDGVTECNPESLGCNVVKNCHANAECVYNATSAGYRCQCAQGYVGNGVECHPLKSC 101
F + + NV C + C C + + G +
Sbjct: 512 FRWHQPAPFDKQQTWAIDNVYIGDGCLDMCSGHGRCVQGSCVCDEQWGGLYCDEPETSLP 571
Query: 102 LEDRSLCG 109
+ +
Sbjct: 572 TQLKDNFN 579
>1igr_A Insulin-like growth factor receptor 1; hormone receptor, insulin
receptor family; HET: NAG FUC BMA MAN; 2.60A {Homo
sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
Length = 478
Score = 26.3 bits (57), Expect = 9.4
Identities = 24/118 (20%), Positives = 36/118 (30%), Gaps = 6/118 (5%)
Query: 13 CDTPCHPNAQCTSPDEFNESREQAKCICNFGYTGDGVTE----CNPESL-GCNVVKNCHA 67
C + + + + +C TE C+PE L C+ N A
Sbjct: 158 EKPMCEKTTINNEYNYRCWTTNRCQKMCPSTCGKRACTENNECCHPECLGSCSAPDNDTA 217
Query: 68 NAECVYNATSAGYRCQCAQG-YVGNGVECHPLKSCLEDRSLCGKDSQGYVGNGVECHP 124
C + + C Y G C C S DS+G+V + EC
Sbjct: 218 CVACRHYYYAGVCVPACPPNTYRFEGWRCVDRDFCANILSAESSDSEGFVIHDGECMQ 275
>1nql_B Epidermal growth factor; cell surface receptor, tyrosine kinase,
glycoprotein, endoso growth factor, auto-inhibition;
HET: NAG BMA; 2.80A {Homo sapiens} SCOP: g.3.11.1 PDB:
1ivo_C* 2kv4_A 1jl9_A 1p9j_A 3njp_C*
Length = 53
Score = 24.0 bits (52), Expect = 9.8
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 65 CHANAECVYNATSAGYRCQCAQGYVG 90
C + C+Y Y C C GY+G
Sbjct: 14 CLHDGVCMYIEALDKYACNCVVGYIG 39
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.138 0.463
Gapped
Lambda K H
0.267 0.0548 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,305,493
Number of extensions: 187099
Number of successful extensions: 1031
Number of sequences better than 10.0: 1
Number of HSP's gapped: 699
Number of HSP's successfully gapped: 283
Length of query: 222
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 132
Effective length of database: 4,188,903
Effective search space: 552935196
Effective search space used: 552935196
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.4 bits)