RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5752
(222 letters)
>d1gl4a2 g.3.11.5 (A:359-398) EGF-like domain of nidogen-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 40
Score = 37.1 bits (86), Expect = 6e-05
Identities = 13/40 (32%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 127 SCLEDRSLCGKDASCVVASQGHFHCECNEGFTGNGITCKP 166
+C +R C A C F C C +TGNG C
Sbjct: 1 TCANNRHQCSVHAECR-DYATGFCCRCVANYTGNGRQCVA 39
Score = 35.6 bits (82), Expect = 2e-04
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 64 NCHANAECVYNATSAGYRCQCAQGYVGNGVECHP 97
C +AEC + G+ C+C Y GNG +C
Sbjct: 8 QCSVHAECRD--YATGFCCRCVANYTGNGRQCVA 39
Score = 28.3 bits (63), Expect = 0.089
Identities = 11/40 (27%), Positives = 14/40 (35%), Gaps = 7/40 (17%)
Query: 16 PCHPNAQCTSPDEFNESREQAKCICNFGYTGDGVTECNPE 55
C +A+C C C YTG+G C E
Sbjct: 8 QCSVHAECRD------YATGFCCRCVANYTGNGRQ-CVAE 40
>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 43
Score = 27.4 bits (61), Expect = 0.18
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Query: 64 NCHANAECVYNATSAGYRCQCAQGYVGNGVEC 95
+ + +C+ T YRC+C GY+ G EC
Sbjct: 12 DVCKHGQCIN--TDGSYRCECPFGYILAGNEC 41
Score = 26.6 bits (59), Expect = 0.34
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 135 CGKDASCVVASQGHFHCECNEGFTGNGITC 164
K C+ + G + CEC G+ G C
Sbjct: 13 VCKHGQCI-NTDGSYRCECPFGYILAGNEC 41
>d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 27.2 bits (60), Expect = 0.31
Identities = 10/44 (22%), Positives = 11/44 (25%), Gaps = 2/44 (4%)
Query: 49 VTECNPESLGCNVVKNCHANAECVYNATSAGYRCQCAQGYVGNG 92
+ EC S C GY C C GY
Sbjct: 4 LDECASRSKSGEEDPQPQCQHLCH--NYVGGYFCSCRPGYELQE 45
Score = 26.5 bits (58), Expect = 0.44
Identities = 9/47 (19%), Positives = 15/47 (31%), Gaps = 3/47 (6%)
Query: 121 ECHPLKSCLEDRSLCGKDASCVVASQGHFHCECNEGFT--GNGITCK 165
EC E+ C G + C C G+ + +C+
Sbjct: 6 ECASRSKSGEEDPQPQCQHLCH-NYVGGYFCSCRPGYELQEDRHSCQ 51
>d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 53
Score = 25.2 bits (55), Expect = 1.4
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 65 CHANAECVYNATSAGYRCQCAQGYVG 90
C C++ + Y C C GY G
Sbjct: 14 CLNGGVCMHIESLDSYTCNCVIGYSG 39
>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein
1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 42
Score = 24.7 bits (54), Expect = 1.7
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 128 CLEDRSLCGKDASCVVASQGHFHCECNEGFTGN 160
C + C C+ + G F C+C +G+TG
Sbjct: 6 CSLGANPCEHAGKCI-NTLGSFECQCLQGYTGP 37
Score = 23.2 bits (50), Expect = 5.7
Identities = 10/27 (37%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Query: 65 CHANAECVYNATSAGYRCQCAQGYVGN 91
C +C+ T + CQC QGY G
Sbjct: 13 CEHAGKCIN--TLGSFECQCLQGYTGP 37
>d1ah9a_ b.40.4.5 (A:) Translational initiation factor 1, IF1
{Escherichia coli [TaxId: 562]}
Length = 71
Score = 25.0 bits (55), Expect = 2.5
Identities = 9/48 (18%), Positives = 14/48 (29%), Gaps = 1/48 (2%)
Query: 147 GHFHCECNEGFTGNGITCKPVRKKESDFLLVNQGMFMLRVPYQPTRTD 194
F E G +RK L ++ L PY ++
Sbjct: 19 TMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELT-PYDLSKGR 65
>d1fs7a_ a.138.1.3 (A:) Cytochrome c nitrite reductase {Wolinella
succinogenes [TaxId: 844]}
Length = 471
Score = 26.6 bits (58), Expect = 2.7
Identities = 12/88 (13%), Positives = 24/88 (27%), Gaps = 10/88 (11%)
Query: 44 YTGDGVTECNPESLGCNVVKNCHANAECVYNAT--SAGYRC----QCAQGYVGNGVECH- 96
Y + ++K H + E G C H
Sbjct: 219 YDEINFADWTHGISKTPMLKAQHPDWELYKTGIHGQKGVSCADCHMPYTQEGAVKYSDHK 278
Query: 97 ---PLKSCLEDRSLCGKDSQGYVGNGVE 121
PL + + C ++S+ + + V+
Sbjct: 279 VGNPLDNMDKSCMNCHRESEQKLKDIVK 306
>d1k36a_ g.3.11.1 (A:) Epiregulin, EGF-domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 46
Score = 24.0 bits (52), Expect = 3.9
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 68 NAECVYNATSAGYRCQCAQGYVG 90
+ +C+Y + C+C GY G
Sbjct: 16 HGQCIYLVDMSQNYCRCEVGYTG 38
>d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 44
Score = 23.2 bits (50), Expect = 5.8
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 128 CLEDRSLCGKDASCVVASQGHFHCECNEGFTGNGITCK 165
C LCG CV + G F C+C+EG+ + K
Sbjct: 6 CRISPDLCG-RGQCV-NTPGDFECKCDEGYESGFMMMK 41
Score = 22.5 bits (48), Expect = 9.9
Identities = 8/38 (21%), Positives = 15/38 (39%), Gaps = 2/38 (5%)
Query: 59 CNVVKNCHANAECVYNATSAGYRCQCAQGYVGNGVECH 96
C + + +CV T + C+C +GY +
Sbjct: 6 CRISPDLCGRGQCVN--TPGDFECKCDEGYESGFMMMK 41
>d1d7qa_ b.40.4.5 (A:) Translation initiation factor-1a, eIF1a
{Human (Homo sapiens) [TaxId: 9606]}
Length = 143
Score = 24.8 bits (54), Expect = 5.8
Identities = 11/50 (22%), Positives = 17/50 (34%), Gaps = 6/50 (12%)
Query: 147 GHFHCECNEGFTGNGITCKPVRKKESDFLLVNQGMFMLRV--PYQPTRTD 194
G C +G +RKK + +N +L YQ + D
Sbjct: 44 GRLEAMCFDGVKRLCHIRGKLRKK----VWINTSDIILVGLRDYQDNKAD 89
>d1nqlb_ g.3.11.1 (B:) Epidermal growth factor, EGF {Human (Homo
sapiens) [TaxId: 9606]}
Length = 48
Score = 23.3 bits (50), Expect = 6.2
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 5/41 (12%)
Query: 50 TECNPESLGCNVVKNCHANAECVYNATSAGYRCQCAQGYVG 90
+EC G C + C+Y Y C C GY+G
Sbjct: 2 SECPLSHDG-----YCLHDGVCMYIEALDKYACNCVVGYIG 37
>d1tpga1 g.3.11.1 (A:51-91) Plasminogen activator (tissue-type),
t-PA {Human (Homo sapiens) [TaxId: 9606]}
Length = 41
Score = 22.9 bits (49), Expect = 7.2
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 65 CHANAECVYNATSAGYRCQCAQGYVG 90
C C + + CQC +G+ G
Sbjct: 6 CFNGGTCQQALYFSDFVCQCPEGFAG 31
>d1moxc_ g.3.11.1 (C:) Transforming growth factor alpha {Human
(Homo sapiens) [TaxId: 9606]}
Length = 49
Score = 22.9 bits (49), Expect = 8.9
Identities = 7/23 (30%), Positives = 9/23 (39%)
Query: 68 NAECVYNATSAGYRCQCAQGYVG 90
+ C + C C GYVG
Sbjct: 17 HGTCRFLVQEDKPACVCHSGYVG 39
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.138 0.463
Gapped
Lambda K H
0.267 0.0607 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 858,390
Number of extensions: 41359
Number of successful extensions: 246
Number of sequences better than 10.0: 1
Number of HSP's gapped: 226
Number of HSP's successfully gapped: 131
Length of query: 222
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 140
Effective length of database: 1,281,736
Effective search space: 179443040
Effective search space used: 179443040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.7 bits)