BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5754
(67 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O76190|RL5_BOMMO 60S ribosomal protein L5 OS=Bombyx mori GN=RpL5 PE=2 SV=1
Length = 299
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/62 (58%), Positives = 45/62 (72%), Gaps = 7/62 (11%)
Query: 1 MYKKAHENIRADPAHIKKEKKTPTVDSKGKIQKPKRWNKKKLTLAQRKERVSTAKANFLK 60
+YKKAHE IRADP+H KKE K +V K KRWNK+KLTLA+RK R+ KA+F+K
Sbjct: 239 IYKKAHEAIRADPSHKKKELKKDSV-------KQKRWNKRKLTLAERKNRIKQKKASFIK 291
Query: 61 KL 62
+L
Sbjct: 292 RL 293
>sp|Q5XUC7|RL5_TOXCI 60S ribosomal protein L5 OS=Toxoptera citricida GN=RpL5 PE=2 SV=1
Length = 300
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/65 (55%), Positives = 45/65 (69%), Gaps = 7/65 (10%)
Query: 1 MYKKAHENIRADPAHIKKEKKTPTVDSKGKIQKPKRWNKKKLTLAQRKERVSTAKANFLK 60
MYKKAHENIR+DP +K KK + ++PKRWN KKLT A+RK+RV AKA +LK
Sbjct: 239 MYKKAHENIRSDPKRDRKPKKDVS-------KEPKRWNAKKLTNAERKQRVVEAKAAYLK 291
Query: 61 KLGKE 65
+L E
Sbjct: 292 ELQGE 296
>sp|Q56FG6|RL5_LYSTE 60S ribosomal protein L5 OS=Lysiphlebus testaceipes GN=RpL5 PE=2
SV=1
Length = 297
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 41/62 (66%), Gaps = 8/62 (12%)
Query: 1 MYKKAHENIRADPAHIKKEKKTPTVDSKGKIQKPKRWNKKKLTLAQRKERVSTAKANFLK 60
MYKKAHE IRADP + V +K ++K RWN+ KLTL++RK+RV KA+F K
Sbjct: 239 MYKKAHEAIRADP------DRAEIVKTKEPVKK--RWNRAKLTLSERKDRVKQIKASFQK 290
Query: 61 KL 62
KL
Sbjct: 291 KL 292
>sp|Q6JWW5|RL5_OIKDI 60S ribosomal protein L5 OS=Oikopleura dioica GN=RPL5 PE=3 SV=1
Length = 303
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 38/60 (63%), Gaps = 9/60 (15%)
Query: 1 MYKKAHENIRADPAHIKKEKKTPTVDSKGKIQKPKRWNKKKLTLAQRKERVSTAKANFLK 60
MYKKAH IRADP+ K K TVD K RWN+ K++ AQR+ RV+ KA+FL+
Sbjct: 247 MYKKAHAAIRADPS--PKAKVEKTVDKK-------RWNRAKISYAQRRARVAQVKASFLR 297
>sp|Q9W5R8|RL5_DROME 60S ribosomal protein L5 OS=Drosophila melanogaster GN=RpL5 PE=2
SV=2
Length = 299
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 38/66 (57%), Gaps = 7/66 (10%)
Query: 1 MYKKAHENIRADPAHIKKEKKTPTVDSKGKIQKPKRWNKKKLTLAQRKERVSTAKANFLK 60
+YKKAH+ IR DP H KK+ V KRWN KKLT QRK +++ KA ++
Sbjct: 239 IYKKAHQAIRNDPTHKVTAKKSSAV-------TKKRWNAKKLTNEQRKTKIAAHKAAYVA 291
Query: 61 KLGKET 66
KL ET
Sbjct: 292 KLQSET 297
>sp|Q4KTI3|RL5_SUBDO 60S ribosomal protein L5 OS=Suberites domuncula GN=RPL5 PE=2 SV=1
Length = 293
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 38/62 (61%), Gaps = 8/62 (12%)
Query: 1 MYKKAHENIRADPAHIKKEKKTPTVDSKGKIQKPKRWNKKKLTLAQRKERVSTAKANFLK 60
MY+ AH IRA+PAH KK+ + V KRWN+ K++L Q+++RV KA +LK
Sbjct: 239 MYRDAHAKIRANPAHEKKQPRDGLV--------KKRWNRAKMSLKQKRDRVKQKKAAYLK 290
Query: 61 KL 62
L
Sbjct: 291 TL 292
>sp|Q26481|RL5_STYCL 60S ribosomal protein L5 OS=Styela clava GN=RPL5 PE=3 SV=3
Length = 295
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 36/60 (60%), Gaps = 9/60 (15%)
Query: 1 MYKKAHENIRADPAHIKKEKKTPTVDSKGKIQKPKRWNKKKLTLAQRKERVSTAKANFLK 60
MY KAH IR DP KK D GK KRWN+KK+T +QR++RV KA+FL+
Sbjct: 239 MYTKAHAAIREDPTPKKK------TDFAGK---TKRWNRKKMTFSQRRDRVKQKKASFLR 289
>sp|O65353|RL5_HELAN 60S ribosomal protein L5 OS=Helianthus annuus GN=RPL5A PE=2 SV=1
Length = 297
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 37/62 (59%), Gaps = 9/62 (14%)
Query: 1 MYKKAHENIRADPAHIKKEKKTPTVDSKGKIQKPKRWNKKKLTLAQRKERVSTAKANFLK 60
+YKKAHE IRA+PA KK KRW +KKLT QR+ +V+ AKA +LK
Sbjct: 239 LYKKAHEAIRANPARKTVAKKA---------HPKKRWTEKKLTREQRQGKVAAAKAEWLK 289
Query: 61 KL 62
K+
Sbjct: 290 KI 291
>sp|P15125|RL5A_XENLA 60S ribosomal protein L5-A OS=Xenopus laevis GN=rpl5-a PE=2 SV=2
Length = 296
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 38/60 (63%), Gaps = 9/60 (15%)
Query: 1 MYKKAHENIRADPAHIKKEKKTPTVDSKGKIQKPKRWNKKKLTLAQRKERVSTAKANFLK 60
+YKKAH IR +P H KK KK K KRWN+ KL+L Q+K+RV+ KA+FL+
Sbjct: 239 LYKKAHAGIRENPVHEKKPKKE---------VKKKRWNRAKLSLEQKKDRVAQKKASFLR 289
>sp|P15126|RL5B_XENLA 60S ribosomal protein L5-B OS=Xenopus laevis GN=rpl5-b PE=2 SV=2
Length = 296
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 38/60 (63%), Gaps = 9/60 (15%)
Query: 1 MYKKAHENIRADPAHIKKEKKTPTVDSKGKIQKPKRWNKKKLTLAQRKERVSTAKANFLK 60
+YKKAH IR +P H KK KK K KRWN+ KL+L Q+K+RV+ KA+FL+
Sbjct: 239 IYKKAHAGIRENPVHEKKPKKE---------VKKKRWNRAKLSLEQKKDRVAQKKASFLR 289
>sp|P46777|RL5_HUMAN 60S ribosomal protein L5 OS=Homo sapiens GN=RPL5 PE=1 SV=3
Length = 297
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 39/60 (65%), Gaps = 9/60 (15%)
Query: 1 MYKKAHENIRADPAHIKKEKKTPTVDSKGKIQKPKRWNKKKLTLAQRKERVSTAKANFLK 60
MYKKAH IR +P + KK KK K KRWN+ K++LAQ+K+RV+ KA+FL+
Sbjct: 239 MYKKAHAAIRENPVYEKKPKKE---------VKKKRWNRPKMSLAQKKDRVAQKKASFLR 289
>sp|Q58DW5|RL5_BOVIN 60S ribosomal protein L5 OS=Bos taurus GN=RPL5 PE=2 SV=3
Length = 297
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 39/60 (65%), Gaps = 9/60 (15%)
Query: 1 MYKKAHENIRADPAHIKKEKKTPTVDSKGKIQKPKRWNKKKLTLAQRKERVSTAKANFLK 60
MYKKAH IR +P + KK KK K KRWN+ K++LAQ+K+RV+ KA+FL+
Sbjct: 239 MYKKAHAAIRENPVYEKKPKKE---------VKKKRWNRPKMSLAQKKDRVAQKKASFLR 289
>sp|Q4R5M0|RL5_MACFA 60S ribosomal protein L5 OS=Macaca fascicularis GN=RPL5 PE=2 SV=3
Length = 297
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 39/60 (65%), Gaps = 9/60 (15%)
Query: 1 MYKKAHENIRADPAHIKKEKKTPTVDSKGKIQKPKRWNKKKLTLAQRKERVSTAKANFLK 60
MYKKAH IR +P + KK KK K KRWN+ K++LAQ+K+RV+ KA+FL+
Sbjct: 239 MYKKAHAAIRENPVYEKKPKKE---------VKKKRWNRPKMSLAQKKDRVAQKKASFLR 289
>sp|P47962|RL5_MOUSE 60S ribosomal protein L5 OS=Mus musculus GN=Rpl5 PE=1 SV=3
Length = 297
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 39/60 (65%), Gaps = 9/60 (15%)
Query: 1 MYKKAHENIRADPAHIKKEKKTPTVDSKGKIQKPKRWNKKKLTLAQRKERVSTAKANFLK 60
MYKKAH IR +P + KK K+ K KRWN+ K++LAQ+K+RV+ KA+FL+
Sbjct: 239 MYKKAHAAIRENPVYEKKPKRE---------VKKKRWNRPKMSLAQKKDRVAQKKASFLR 289
>sp|P09895|RL5_RAT 60S ribosomal protein L5 OS=Rattus norvegicus GN=Rpl5 PE=1 SV=3
Length = 297
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 39/60 (65%), Gaps = 9/60 (15%)
Query: 1 MYKKAHENIRADPAHIKKEKKTPTVDSKGKIQKPKRWNKKKLTLAQRKERVSTAKANFLK 60
MYKKAH IR +P + KK K+ K KRWN+ K++LAQ+K+RV+ KA+FL+
Sbjct: 239 MYKKAHAAIRENPVYEKKPKRE---------VKKKRWNRPKMSLAQKKDRVAQKKASFLR 289
>sp|P49227|RL52_ARATH 60S ribosomal protein L5-2 OS=Arabidopsis thaliana GN=RPL5B PE=2
SV=3
Length = 301
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 30/51 (58%), Gaps = 8/51 (15%)
Query: 1 MYKKAHENIRADPAHIKKEKKTPTVDSKGKIQKPKRWNKKKLTLAQRKERV 51
MYKK H IRA+P H K EK P ++ KR+N KKLT +RK ++
Sbjct: 238 MYKKVHAAIRAEPNHKKTEKSAP--------KEHKRYNLKKLTYEERKNKL 280
>sp|P22451|RL5_CHICK 60S ribosomal protein L5 OS=Gallus gallus GN=RPL5 PE=2 SV=2
Length = 297
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 37/60 (61%), Gaps = 9/60 (15%)
Query: 1 MYKKAHENIRADPAHIKKEKKTPTVDSKGKIQKPKRWNKKKLTLAQRKERVSTAKANFLK 60
MYKKAH IR +P H KK K+ K KR N K++LAQ+K+RV+ KA+FL+
Sbjct: 239 MYKKAHAAIRDNPVHEKKPKRE---------VKKKRVNSTKMSLAQKKDRVAQKKASFLR 289
>sp|Q8L4L4|RL52_ORYSJ 60S ribosomal protein L5-2 OS=Oryza sativa subsp. japonica GN=RPL5B
PE=3 SV=1
Length = 304
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 25/48 (52%), Gaps = 8/48 (16%)
Query: 1 MYKKAHENIRADPAHIKKEKKTPTVDSKGKIQKPKRWNKKKLTLAQRK 48
+YKK H IRADP K KK P KR+N KKLT QRK
Sbjct: 239 LYKKVHAAIRADPTMAKSTKKEPATH--------KRYNLKKLTYEQRK 278
>sp|A2WXX3|RL51_ORYSI 60S ribosomal protein L5-1 OS=Oryza sativa subsp. indica GN=RPL5A
PE=2 SV=2
Length = 304
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 25/48 (52%), Gaps = 8/48 (16%)
Query: 1 MYKKAHENIRADPAHIKKEKKTPTVDSKGKIQKPKRWNKKKLTLAQRK 48
+YKK H IRADP K KK P KR+N KKLT QRK
Sbjct: 239 LYKKVHAAIRADPTMAKSTKKEPATH--------KRYNLKKLTYEQRK 278
>sp|Q0JGY1|RL51_ORYSJ 60S ribosomal protein L5-1 OS=Oryza sativa subsp. japonica GN=RPL5A
PE=2 SV=1
Length = 304
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 25/48 (52%), Gaps = 8/48 (16%)
Query: 1 MYKKAHENIRADPAHIKKEKKTPTVDSKGKIQKPKRWNKKKLTLAQRK 48
+YKK H IRADP K KK P KR+N KKLT QRK
Sbjct: 239 LYKKVHAAIRADPTMAKSTKKEPATH--------KRYNLKKLTYEQRK 278
>sp|Q627R7|RL5_CAEBR 60S ribosomal protein L5 OS=Caenorhabditis briggsae GN=rpl-5 PE=3
SV=2
Length = 294
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 10/55 (18%)
Query: 2 YKKAHENIRADPAHIKKEKKTPTVDSKGKIQKPKRWNKKKLTLAQRKERVSTAKA 56
Y+KAH NIRADP+ K+ P+ KR K+LT +RK+RV+ KA
Sbjct: 239 YQKAHANIRADPSPSAKKAAKPS----------KRHTAKRLTYDERKQRVADKKA 283
>sp|Q1HQU2|RL5_AEDAE 60S ribosomal protein L5 OS=Aedes aegypti GN=RpL5 PE=2 SV=1
Length = 297
Score = 35.8 bits (81), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 34/62 (54%), Gaps = 9/62 (14%)
Query: 1 MYKKAHENIRADPAHIKKEKKTPTVDSKGKIQKPKRWNKKKLTLAQRKERVSTAKANFLK 60
+YK AH IR DPA KK +K KR+N KLTL RK +++ KA+FL
Sbjct: 239 IYKNAHAGIRKDPAFHKKPEKK---------VTKKRFNLAKLTLEARKAKIAKHKADFLA 289
Query: 61 KL 62
K+
Sbjct: 290 KI 291
>sp|P93779|RL5_SOLME 60S ribosomal protein L5 (Fragment) OS=Solanum melongena GN=RPL5
PE=2 SV=1
Length = 121
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 8/51 (15%)
Query: 1 MYKKAHENIRADPAHIKKEKKTPTVDSKGKIQKPKRWNKKKLTLAQRKERV 51
MYKK H IR DP+ K +K+ P KR+N KKLT +RK ++
Sbjct: 57 MYKKVHAAIRPDPSPKKSQKQPPKTH--------KRYNLKKLTYEERKAKL 99
>sp|Q6UNT2|RL5_CUCSA 60S ribosomal protein L5 OS=Cucumis sativus GN=RPL5 PE=2 SV=1
Length = 302
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 8/51 (15%)
Query: 1 MYKKAHENIRADPAHIKKEKKTPTVDSKGKIQKPKRWNKKKLTLAQRKERV 51
+YKK H IRA+P K +K P + KR+N KKLT +RK R+
Sbjct: 238 LYKKVHAAIRANPIAKKSDKPQP--------KAHKRYNLKKLTYDERKARL 280
>sp|P19949|RL5_RABIT 60S ribosomal protein L5 (Fragments) OS=Oryctolagus cuniculus
GN=RPL5 PE=1 SV=2
Length = 101
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 9/56 (16%)
Query: 5 AHENIRADPAHIKKEKKTPTVDSKGKIQKPKRWNKKKLTLAQRKERVSTAKANFLK 60
AH IR +P + KK K+ WN+ K++LAQ+K+RV+ KA+FL+
Sbjct: 47 AHAAIRENPVYEKKPKREVKKKR---------WNRPKMSLAQKKDRVAQKKASFLR 93
>sp|Q231U7|RL5_TETTS 60S ribosomal protein L5 OS=Tetrahymena thermophila (strain SB210)
GN=RPL5 PE=1 SV=2
Length = 301
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 30/57 (52%), Gaps = 13/57 (22%)
Query: 1 MYKKAHENIRADPAHIKKEKKTPTVDSKGKIQKPKRWNKK----KLTLAQRKERVST 53
++ K H IR +P +K KK KPKR +KK KLT AQRK+RV T
Sbjct: 246 LFTKVHAEIRKNPERVKSTKKN---------DKPKRDHKKFYPTKLTAAQRKDRVKT 293
>sp|Q8LBI1|RL51_ARATH 60S ribosomal protein L5-1 OS=Arabidopsis thaliana GN=ATL5 PE=2
SV=2
Length = 301
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 8/51 (15%)
Query: 1 MYKKAHENIRADPAHIKKEKKTPTVDSKGKIQKPKRWNKKKLTLAQRKERV 51
+YKK H IRADP K K P ++ KR+N KKLT +RK ++
Sbjct: 238 LYKKVHAAIRADPNPKKTVKPAP--------KQHKRYNLKKLTYEERKNKL 280
>sp|Q4N655|RL5_THEPA 60S ribosomal protein L5 OS=Theileria parva GN=RPL5 PE=3 SV=1
Length = 306
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 17/61 (27%)
Query: 1 MYKKAHENIRADPA----------HIKKEKKTPTVDSKGKIQKPKRWNKKKLTLAQRKER 50
MY KAHENIR +P H+++ K T SKG + K++ AQR+ER
Sbjct: 242 MYAKAHENIRKNPVLPTKPKRKLKHVREGSKVLT--SKGSYVR-----NVKISKAQRRER 294
Query: 51 V 51
V
Sbjct: 295 V 295
>sp|Q4UDE7|RL5_THEAN 60S ribosomal protein L5 OS=Theileria annulata GN=RPL5 PE=3 SV=1
Length = 306
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 17/61 (27%)
Query: 1 MYKKAHENIRADPA----------HIKKEKKTPTVDSKGKIQKPKRWNKKKLTLAQRKER 50
MY AHENIR +P H+++ K T SKG + K+T AQR+ER
Sbjct: 242 MYASAHENIRKNPVLPTKPKRKLKHVREGSKVLT--SKGSYVR-----NVKITKAQRRER 294
Query: 51 V 51
V
Sbjct: 295 V 295
>sp|Q54XX3|RL5_DICDI 60S ribosomal protein L5 OS=Dictyostelium discoideum GN=rpl5 PE=1
SV=1
Length = 292
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 8/62 (12%)
Query: 1 MYKKAHENIRADPAHIKKEKKTPTVDSKGKIQKPKRWNKKKLTLAQRKERVSTAKANFLK 60
+Y AH+ IRA+PA P S + K N K TL Q+K RV++ KA++
Sbjct: 239 IYANAHKAIRANPA--------PAAKSTKSYKDIKSKNLSKRTLKQKKARVASIKASYKA 290
Query: 61 KL 62
+L
Sbjct: 291 RL 292
>sp|Q9SZA7|DRL29_ARATH Probable disease resistance protein At4g33300 OS=Arabidopsis
thaliana GN=At4g33300 PE=2 SV=3
Length = 816
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 30 KIQKPKRWN-KKKLTLAQRKERVSTAKANFLK 60
K+ KRWN ++LTLA++ E++ +NFLK
Sbjct: 81 KVLSSKRWNLYRQLTLARKMEKLEKTISNFLK 112
>sp|Q03K10|UVRC_STRTD UvrABC system protein C OS=Streptococcus thermophilus (strain ATCC
BAA-491 / LMD-9) GN=uvrC PE=3 SV=1
Length = 595
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 13 PAHIKKEKKTPTVDSKGKIQKPKRWNKKKLT-LAQRKERVS-TAKANFLKK 61
P I +E V + K+ KPKR KK+L LA + RVS T K + L+K
Sbjct: 309 PGDIDQESVEALVGDEVKVFKPKRGEKKQLVNLATKNARVSLTQKFDLLEK 359
>sp|Q5M3R7|UVRC_STRT2 UvrABC system protein C OS=Streptococcus thermophilus (strain ATCC
BAA-250 / LMG 18311) GN=uvrC PE=3 SV=1
Length = 595
Score = 28.9 bits (63), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 13 PAHIKKEKKTPTVDSKGKIQKPKRWNKKKLT-LAQRKERVS-TAKANFLKK 61
P I +E V ++ K+ KP+R KK+L LA + RVS T K + L+K
Sbjct: 309 PGDIDQESVEALVGNEVKVFKPQRGEKKQLVNLAMKNARVSLTQKFDLLEK 359
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.309 0.123 0.340
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,884,444
Number of Sequences: 539616
Number of extensions: 726593
Number of successful extensions: 2729
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 2674
Number of HSP's gapped (non-prelim): 42
length of query: 67
length of database: 191,569,459
effective HSP length: 39
effective length of query: 28
effective length of database: 170,524,435
effective search space: 4774684180
effective search space used: 4774684180
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.8 bits)