Query psy5754
Match_columns 67
No_of_seqs 103 out of 259
Neff 5.1
Searched_HMMs 46136
Date Fri Aug 16 17:11:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5754.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5754hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14204 Ribosomal_L18_c: Ribo 99.4 6.2E-15 1.3E-19 93.0 -2.4 47 1-54 48-94 (94)
2 KOG0875|consensus 99.4 3.4E-13 7.3E-18 97.3 4.5 53 1-62 211-263 (264)
3 PTZ00069 60S ribosomal protein 99.3 1.4E-12 3E-17 95.7 5.4 59 1-65 240-298 (300)
4 PF11471 Sugarporin_N: Maltopo 35.9 55 0.0012 18.8 2.8 23 40-62 26-48 (60)
5 PF10076 DUF2313: Uncharacteri 30.0 52 0.0011 21.6 2.3 17 41-57 68-84 (179)
6 KOG1678|consensus 28.8 30 0.00066 24.4 1.0 10 5-14 138-147 (204)
7 PF08294 TIM21: TIM21; InterP 20.2 36 0.00077 22.5 0.1 14 1-14 42-55 (145)
8 PF09494 Slx4: Slx4 endonuclea 19.4 54 0.0012 18.5 0.7 14 1-14 1-14 (64)
9 PF13852 DUF4197: Protein of u 18.5 53 0.0011 23.0 0.6 8 7-14 183-190 (202)
10 PF14490 HHH_4: Helix-hairpin- 11.6 1.3E+02 0.0028 17.9 1.0 11 4-14 35-45 (94)
No 1
>PF14204 Ribosomal_L18_c: Ribosomal L18 C-terminal region; PDB: 2ZKR_n 4A1E_M 4A1C_M 4A1A_M 4A17_M 3O58_E 1S1I_E 3IZS_Q 3O5H_E 3IZR_Q.
Probab=99.42 E-value=6.2e-15 Score=92.98 Aligned_cols=47 Identities=55% Similarity=0.743 Sum_probs=38.6
Q ss_pred ChHHHHHHHhcCCCCCcCCCCCCCccCcccccCccccccccCCHHHHHHHHHHH
Q psy5754 1 MYKKAHENIRADPAHIKKEKKTPTVDSKGKIQKPKRWNKKKLTLAQRKERVSTA 54 (67)
Q Consensus 1 mYkkAHaaIR~dP~~~kk~kk~~k~~~~~~~~~~Kr~~~kKLT~~qRk~rv~~K 54 (67)
||++||++||+||++.+++++. + ...+++|+.+|||++||++||++|
T Consensus 48 ~y~~~h~~Ir~dP~~~~k~~k~----~---~~~~k~~~~~Klt~~eRk~rv~~K 94 (94)
T PF14204_consen 48 MYKKAHAAIREDPSPKKKEKKE----Y---KAEKKRYKPKKLTLEERKARVKQK 94 (94)
T ss_dssp HHHHHHHCCCHSCCCCCCSTSS----S----CHHHHHSCCCCCHHHHCCHSCCC
T ss_pred HHHHHHHHHHhCcccccccccc----c---chhhcccCcccCCHHHHHHHHhcC
Confidence 7999999999999988777533 1 114699999999999999999764
No 2
>KOG0875|consensus
Probab=99.39 E-value=3.4e-13 Score=97.28 Aligned_cols=53 Identities=49% Similarity=0.674 Sum_probs=46.7
Q ss_pred ChHHHHHHHhcCCCCCcCCCCCCCccCcccccCccccccccCCHHHHHHHHHHHHHHHHHHh
Q psy5754 1 MYKKAHENIRADPAHIKKEKKTPTVDSKGKIQKPKRWNKKKLTLAQRKERVSTAKANFLKKL 62 (67)
Q Consensus 1 mYkkAHaaIR~dP~~~kk~kk~~k~~~~~~~~~~Kr~~~kKLT~~qRk~rv~~K~a~~~~~~ 62 (67)
||++||++||+||+++++++.. . ++++|+.++||++||+++|++|+++|+..+
T Consensus 211 ~y~~ahaaIra~p~~~k~~k~~--------k-~~k~~~~~klt~eerk~rv~~k~~~~~~~~ 263 (264)
T KOG0875|consen 211 MYKKAHAAIRADPSPKKTEKAA--------K-ESKRYNAKKLTYEERKDQVAQKVAALLGAQ 263 (264)
T ss_pred HHHHHHHHhhcccCcccccccc--------c-cchhhccccCCHHHHHHHHHHHHHHhhccC
Confidence 7999999999999998887733 2 679999999999999999999999987543
No 3
>PTZ00069 60S ribosomal protein L5; Provisional
Probab=99.35 E-value=1.4e-12 Score=95.69 Aligned_cols=59 Identities=49% Similarity=0.682 Sum_probs=48.0
Q ss_pred ChHHHHHHHhcCCCCCcCCCCCCCccCcccccCccccccccCCHHHHHHHHHHHHHHHHHHhCcc
Q psy5754 1 MYKKAHENIRADPAHIKKEKKTPTVDSKGKIQKPKRWNKKKLTLAQRKERVSTAKANFLKKLGKE 65 (67)
Q Consensus 1 mYkkAHaaIR~dP~~~kk~kk~~k~~~~~~~~~~Kr~~~kKLT~~qRk~rv~~K~a~~~~~~~~~ 65 (67)
||++||++||+||++++++++. .|. . ++++|+.+|||++||++||++++++++...+..
T Consensus 240 ~y~~ah~~Ir~~P~~~~~~kk~---~~~--~-~~Kr~~~~Klt~~qrk~rv~~k~a~~~~~~q~~ 298 (300)
T PTZ00069 240 MYKKAHAAIRANPSKVKKKKKK---KKK--V-VHKKYKTKKLTGKQRKARVKAKKAQRRERLQKK 298 (300)
T ss_pred HHHHHHHHHHhCcCccCccccc---ccc--c-cccccccccCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 7999999999999877655432 121 2 568999999999999999999999998776653
No 4
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=35.86 E-value=55 Score=18.77 Aligned_cols=23 Identities=17% Similarity=0.143 Sum_probs=18.8
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHh
Q psy5754 40 KKLTLAQRKERVSTAKANFLKKL 62 (67)
Q Consensus 40 kKLT~~qRk~rv~~K~a~~~~~~ 62 (67)
..||.|||-+.+.++++......
T Consensus 26 ~~ltiEqRLa~LE~rL~~ae~ra 48 (60)
T PF11471_consen 26 APLTIEQRLAALEQRLQAAEQRA 48 (60)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHH
Confidence 46999999999999988776543
No 5
>PF10076 DUF2313: Uncharacterized protein conserved in bacteria (DUF2313); InterPro: IPR018755 Members of this family of proteins comprise various hypothetical and putative bacteriophage tail proteins, including Gp48 from Bacteriophage Mu and other Mu-like prophages such as FluMu.
Probab=30.04 E-value=52 Score=21.64 Aligned_cols=17 Identities=24% Similarity=0.317 Sum_probs=14.7
Q ss_pred cCCHHHHHHHHHHHHHH
Q psy5754 41 KLTLAQRKERVSTAKAN 57 (67)
Q Consensus 41 KLT~~qRk~rv~~K~a~ 57 (67)
-.|.++|+++|..++..
T Consensus 68 ~~tle~RR~~i~~k~~~ 84 (179)
T PF10076_consen 68 TDTLEERRARILAKLNS 84 (179)
T ss_pred CCCHHHHHHHHHHHHHc
Confidence 47999999999998864
No 6
>KOG1678|consensus
Probab=28.80 E-value=30 Score=24.44 Aligned_cols=10 Identities=50% Similarity=0.813 Sum_probs=8.9
Q ss_pred HHHHHhcCCC
Q psy5754 5 AHENIRADPA 14 (67)
Q Consensus 5 AHaaIR~dP~ 14 (67)
.|.+||-||.
T Consensus 138 ~h~aIRrdp~ 147 (204)
T KOG1678|consen 138 FHKAIRRDPR 147 (204)
T ss_pred HHHHHhcCCC
Confidence 6999999995
No 7
>PF08294 TIM21: TIM21; InterPro: IPR013261 TIM21 interacts with the outer mitochondrial TOM complex and promotes the insertion of proteins into the inner mitochondrial membrane [].; PDB: 2CIU_A.
Probab=20.23 E-value=36 Score=22.52 Aligned_cols=14 Identities=29% Similarity=0.774 Sum_probs=11.2
Q ss_pred ChHHHHHHHhcCCC
Q psy5754 1 MYKKAHENIRADPA 14 (67)
Q Consensus 1 mYkkAHaaIR~dP~ 14 (67)
+|-+|.+.|++||.
T Consensus 42 ifn~A~~~i~~d~~ 55 (145)
T PF08294_consen 42 IFNRAVDRIKKDPR 55 (145)
T ss_dssp HHHHHHHHHHH-HH
T ss_pred HHHHHHHHHhcCHH
Confidence 58899999999993
No 8
>PF09494 Slx4: Slx4 endonuclease; InterPro: IPR018574 The Slx4 protein is a heteromeric structure-specific endonuclease found in fungi. Slx4 with Slx1 acts as a nuclease on branched DNA substrates, particularly simple-Y, 5'-flap, or replication fork structures by cleaving the strand bearing the 5' non-homologous arm at the branch junction and thus generating ligatable nicked products from 5'-flap or replication fork substrates [].
Probab=19.42 E-value=54 Score=18.50 Aligned_cols=14 Identities=29% Similarity=0.655 Sum_probs=10.3
Q ss_pred ChHHHHHHHhcCCC
Q psy5754 1 MYKKAHENIRADPA 14 (67)
Q Consensus 1 mYkkAHaaIR~dP~ 14 (67)
|+..-+.+|+.||+
T Consensus 1 l~~~lt~~I~~~p~ 14 (64)
T PF09494_consen 1 LFEALTKLIRSDPE 14 (64)
T ss_pred CHHHHHHHHHcCHH
Confidence 45667788888884
No 9
>PF13852 DUF4197: Protein of unknown function (DUF4197)
Probab=18.48 E-value=53 Score=22.96 Aligned_cols=8 Identities=63% Similarity=0.958 Sum_probs=6.9
Q ss_pred HHHhcCCC
Q psy5754 7 ENIRADPA 14 (67)
Q Consensus 7 aaIR~dP~ 14 (67)
.+||.||.
T Consensus 183 ~~IR~nP~ 190 (202)
T PF13852_consen 183 AAIRANPA 190 (202)
T ss_pred HHHHcChh
Confidence 58999995
No 10
>PF14490 HHH_4: Helix-hairpin-helix containing domain; PDB: 3GPL_A 3E1S_A 3GP8_A.
Probab=11.56 E-value=1.3e+02 Score=17.91 Aligned_cols=11 Identities=27% Similarity=0.444 Sum_probs=7.9
Q ss_pred HHHHHHhcCCC
Q psy5754 4 KAHENIRADPA 14 (67)
Q Consensus 4 kAHaaIR~dP~ 14 (67)
.+.+.|++||=
T Consensus 35 ~ai~~l~~nPY 45 (94)
T PF14490_consen 35 DAIEILKENPY 45 (94)
T ss_dssp THHHHHHH-ST
T ss_pred HHHHHHHHChH
Confidence 46788999995
Done!