Query psy5754
Match_columns 67
No_of_seqs 103 out of 259
Neff 5.1
Searched_HMMs 29240
Date Fri Aug 16 17:11:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5754.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5754hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5e_D 60S ribosomal protein L 99.5 9.5E-16 3.2E-20 111.1 1.3 57 1-60 239-295 (297)
2 4a17_M RPL5, 60S ribosomal pro 99.5 3.7E-14 1.3E-18 102.9 4.0 55 1-60 246-300 (301)
3 2zkr_n 60S ribosomal protein L 99.4 1.7E-14 5.9E-19 104.5 0.1 55 1-64 239-293 (297)
4 3iz5_Q 60S ribosomal protein L 99.1 1.5E-14 5E-19 105.2 -14.9 55 1-63 239-293 (304)
5 2ke4_A CDC42-interacting prote 70.3 3.4 0.00012 25.1 2.6 25 41-65 10-34 (98)
6 3ra3_A P1C; coiled coil domain 38.6 34 0.0012 16.3 2.6 15 44-58 12-26 (28)
7 2ciu_A TIM21P, import inner me 19.5 26 0.00088 22.1 0.2 14 1-14 10-23 (127)
8 4e17_B Catenin alpha-1; four h 19.0 46 0.0016 17.3 1.1 23 41-63 7-29 (40)
9 2oeq_A Protein of unknown func 16.2 73 0.0025 19.0 1.7 13 2-14 28-40 (122)
10 3mst_A Putative nitrate transp 13.7 56 0.0019 22.9 0.8 13 2-14 175-187 (244)
No 1
>3u5e_D 60S ribosomal protein L5; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_D 4b6a_D 3izc_Q 3izs_Q 3o58_E 3o5h_E 3jyw_E 1s1i_E
Probab=99.54 E-value=9.5e-16 Score=111.11 Aligned_cols=57 Identities=35% Similarity=0.502 Sum_probs=48.6
Q ss_pred ChHHHHHHHhcCCCCCcCCCCCCCccCcccccCccccccccCCHHHHHHHHHHHHHHHHH
Q psy5754 1 MYKKAHENIRADPAHIKKEKKTPTVDSKGKIQKPKRWNKKKLTLAQRKERVSTAKANFLK 60 (67)
Q Consensus 1 mYkkAHaaIR~dP~~~kk~kk~~k~~~~~~~~~~Kr~~~kKLT~~qRk~rv~~K~a~~~~ 60 (67)
||++||++||+||++++++++.++++|+. .+++||.+|||++||++||++|+++|.+
T Consensus 239 ~y~~~h~~Ir~~P~~~k~~~~k~~~~~~~---~~k~~~~~klt~~qrk~~v~~k~~~~~~ 295 (297)
T 3u5e_D 239 IYTSAHEAIRADPAFKPTEKKFTKEQYAA---ESKKYRQTKLSKEERAARVAAKIAALAG 295 (297)
T ss_dssp HHHHHHHHHHHCCSCCCCCCSSCHHHHHH---HHHTTCCCCCCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhCcccccccccccccccch---hccccCcccCCHHHHHHHHHHHHHHHhh
Confidence 79999999999999887776554455644 5689999999999999999999999864
No 2
>4a17_M RPL5, 60S ribosomal protein L5; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_M 4a1c_M 4a1e_M
Probab=99.45 E-value=3.7e-14 Score=102.93 Aligned_cols=55 Identities=38% Similarity=0.529 Sum_probs=45.4
Q ss_pred ChHHHHHHHhcCCCCCcCCCCCCCccCcccccCccccccccCCHHHHHHHHHHHHHHHHH
Q psy5754 1 MYKKAHENIRADPAHIKKEKKTPTVDSKGKIQKPKRWNKKKLTLAQRKERVSTAKANFLK 60 (67)
Q Consensus 1 mYkkAHaaIR~dP~~~kk~kk~~k~~~~~~~~~~Kr~~~kKLT~~qRk~rv~~K~a~~~~ 60 (67)
||++||++||+||++++++++. ++|.. .+++||.+|||++||++||++|+++|.+
T Consensus 246 ~y~~~h~~Ir~~p~~~k~~~~~--~~~~~---~~k~~~~~klt~~qrk~~v~~k~~~~~~ 300 (301)
T 4a17_M 246 LFTKVHAEIRKNPERVKSTKKN--DKPKR---DHKKFYPTKLTAAQRKDRVKTKFQLALS 300 (301)
T ss_dssp HHHHHHHHHHHSCCCCCCCCCC--CCCCH---HHHHHSCCCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCcccccccccc--ccccc---cccccCcccCCHHHHHHHHHHHHHHHhc
Confidence 7999999999999987765432 23333 4689999999999999999999999864
No 3
>2zkr_n 60S ribosomal protein L5; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=99.41 E-value=1.7e-14 Score=104.52 Aligned_cols=55 Identities=53% Similarity=0.850 Sum_probs=8.7
Q ss_pred ChHHHHHHHhcCCCCCcCCCCCCCccCcccccCccccccccCCHHHHHHHHHHHHHHHHHHhCc
Q psy5754 1 MYKKAHENIRADPAHIKKEKKTPTVDSKGKIQKPKRWNKKKLTLAQRKERVSTAKANFLKKLGK 64 (67)
Q Consensus 1 mYkkAHaaIR~dP~~~kk~kk~~k~~~~~~~~~~Kr~~~kKLT~~qRk~rv~~K~a~~~~~~~~ 64 (67)
||++||++||+||+++++++++ . ..++||.+|||++||++||++|+++|+..++.
T Consensus 239 ~y~~~~~~Ir~~P~~~~~~k~~--------~-~~k~~~~~klt~~qrk~rv~~k~~~~~~~~~~ 293 (297)
T 2zkr_n 239 MYKKAHAAIRENPVYEKKPKKE--------V-KKKRWNRPKMSLAQKKDRVAQKKASFLRAQER 293 (297)
T ss_dssp HHHHHHHHC-------------------------------------------------------
T ss_pred HHHHHHHHHHhCCCcccccccc--------c-ccccccccccChHHHHHHHHHHHHHHHHhhhh
Confidence 7999999999999988777654 2 13899999999999999999999999965443
No 4
>3iz5_Q 60S ribosomal protein L5 (L18P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Q
Probab=99.09 E-value=1.5e-14 Score=105.15 Aligned_cols=55 Identities=42% Similarity=0.551 Sum_probs=45.3
Q ss_pred ChHHHHHHHhcCCCCCcCCCCCCCccCcccccCccccccccCCHHHHHHHHHHHHHHHHHHhC
Q psy5754 1 MYKKAHENIRADPAHIKKEKKTPTVDSKGKIQKPKRWNKKKLTLAQRKERVSTAKANFLKKLG 63 (67)
Q Consensus 1 mYkkAHaaIR~dP~~~kk~kk~~k~~~~~~~~~~Kr~~~kKLT~~qRk~rv~~K~a~~~~~~~ 63 (67)
||++||++||+||+++++++.. . . ++++||.+|||++||++||++|+++|++..+
T Consensus 239 ~y~~~h~~Ir~~P~~~k~~~~~-----~--~-~~k~~~~~klt~~qrk~~v~~k~~~~~~~~~ 293 (304)
T 3iz5_Q 239 LYKKVHAAIRADPTMAKSTKKE-----P--A-THKRYNLKKLTYEQRKASLVERLNALNSSAG 293 (304)
T ss_dssp CCCCCCCSCSCCHHHHHHCSCC-----C--S-HHHHHHHHHHHHHHHTTCSCCSSSCCCSCCS
T ss_pred HHHHHHHHHHhCccccccCCCc-----c--c-cccccCcccCCHHHHHHHHHHHHHHHHHHhC
Confidence 8999999999999876655432 1 2 5689999999999999999999998876544
No 5
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=70.28 E-value=3.4 Score=25.06 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=21.3
Q ss_pred cCCHHHHHHHHHHHHHHHHHHhCcc
Q psy5754 41 KLTLAQRKERVSTAKANFLKKLGKE 65 (67)
Q Consensus 41 KLT~~qRk~rv~~K~a~~~~~~~~~ 65 (67)
-|..+||+.++.+||..+....+.+
T Consensus 10 ~LPpeqRkkkL~~Ki~el~~ei~ke 34 (98)
T 2ke4_A 10 HLPPEQQRKRLQQQLEERSRELQKE 34 (98)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999998776553
No 6
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=38.64 E-value=34 Score=16.30 Aligned_cols=15 Identities=20% Similarity=0.255 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHH
Q psy5754 44 LAQRKERVSTAKANF 58 (67)
Q Consensus 44 ~~qRk~rv~~K~a~~ 58 (67)
++|+-+.+.+||+++
T Consensus 12 leqkiaalkqkiasl 26 (28)
T 3ra3_A 12 LEQKIAALKQKIASL 26 (28)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 467777777777766
No 7
>2ciu_A TIM21P, import inner membrane translocase subunit TIM21 mitochondrial; mitochondrial import, mitochondrion, protein transport; 1.6A {Saccharomyces cerevisiae}
Probab=19.51 E-value=26 Score=22.10 Aligned_cols=14 Identities=7% Similarity=0.340 Sum_probs=11.9
Q ss_pred ChHHHHHHHhcCCC
Q psy5754 1 MYKKAHENIRADPA 14 (67)
Q Consensus 1 mYkkAHaaIR~dP~ 14 (67)
+|-+|.+.|++||.
T Consensus 10 ~FnrAv~rIk~Dp~ 23 (127)
T 2ciu_A 10 LFNRAVSMVEKNKD 23 (127)
T ss_dssp HHHHHHHHHHHCHH
T ss_pred HHHHHHHHHhcCHH
Confidence 47899999999983
No 8
>4e17_B Catenin alpha-1; four helix bundle, cell adhesion; 2.30A {Mus musculus}
Probab=18.97 E-value=46 Score=17.29 Aligned_cols=23 Identities=22% Similarity=0.241 Sum_probs=15.8
Q ss_pred cCCHHHHHHHHHHHHHHHHHHhC
Q psy5754 41 KLTLAQRKERVSTAKANFLKKLG 63 (67)
Q Consensus 41 KLT~~qRk~rv~~K~a~~~~~~~ 63 (67)
..|...|+++|...=+++++.+|
T Consensus 7 ~~tr~~rkerIv~eCnavrqALQ 29 (40)
T 4e17_B 7 SCTRDDRRERIVAECNAVRQALQ 29 (40)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHH
T ss_pred hhcchhHHHHHHHHHHHHHHHHH
Confidence 35778899999887777776654
No 9
>2oeq_A Protein of unknown function, DUF964; helix bundle, structural genomics, PSI-2, protein structure initiative; 2.90A {Geobacillus stearothermophilus} SCOP: a.281.1.2
Probab=16.16 E-value=73 Score=18.96 Aligned_cols=13 Identities=38% Similarity=0.613 Sum_probs=11.6
Q ss_pred hHHHHHHHhcCCC
Q psy5754 2 YKKAHENIRADPA 14 (67)
Q Consensus 2 YkkAHaaIR~dP~ 14 (67)
|+.|.++|.+||.
T Consensus 28 ~k~A~~~l~~D~e 40 (122)
T 2oeq_A 28 LKRAYEDVRRDET 40 (122)
T ss_dssp HHHHHHHHHTCTT
T ss_pred HHHHHHHHHCCHH
Confidence 7889999999995
No 10
>3mst_A Putative nitrate transport protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.35A {Thermoplasma volcanium}
Probab=13.75 E-value=56 Score=22.92 Aligned_cols=13 Identities=15% Similarity=0.409 Sum_probs=11.6
Q ss_pred hHHHHHHHhcCCC
Q psy5754 2 YKKAHENIRADPA 14 (67)
Q Consensus 2 YkkAHaaIR~dP~ 14 (67)
|.++-+-||+||.
T Consensus 175 YeeGIelIR~DPe 187 (244)
T 3mst_A 175 YEQGIDFIKNNHE 187 (244)
T ss_dssp HHHHHHHHHHCHH
T ss_pred HHHHHHHHHHCHH
Confidence 7888999999994
Done!