Query psy5754
Match_columns 67
No_of_seqs 103 out of 259
Neff 5.1
Searched_HMMs 13730
Date Fri Aug 16 17:11:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5754.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/5754hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2oeqa1 a.281.1.2 (A:3-115) Yh 17.4 31 0.0023 19.0 1.7 13 2-14 23-35 (113)
2 d2iaza1 a.281.1.2 (A:1-111) Hy 13.9 27 0.002 19.1 0.8 13 2-14 24-36 (111)
3 d1a8ra_ d.96.1.1 (A:) GTP cycl 13.4 92 0.0067 19.5 3.5 26 40-65 28-53 (221)
4 d1vqom1 d.12.1.2 (M:1-194) Rib 10.3 27 0.002 22.2 -0.0 10 5-14 137-146 (194)
5 d2piha1 a.281.1.1 (A:2-124) Un 10.3 41 0.003 18.5 0.8 13 2-14 28-40 (123)
6 d2oeea1 a.281.1.2 (A:3-112) Hy 8.5 52 0.0038 17.6 0.8 13 2-14 23-35 (110)
7 d1ef1c_ a.137.5.1 (C:) Moesin 8.0 1.2E+02 0.0089 16.6 2.3 24 40-63 20-43 (90)
8 d1ffki_ d.12.1.2 (I:) Ribosoma 7.2 27 0.002 22.2 -1.1 10 5-14 137-146 (194)
9 d1t95a1 a.5.8.1 (A:87-161) Hyp 6.2 2E+02 0.015 14.7 3.2 19 41-59 6-24 (75)
10 d1xmeb2 f.17.2.1 (B:3-36) Bact 5.9 1.1E+02 0.0077 13.9 1.0 6 4-9 4-9 (34)
No 1
>d2oeqa1 a.281.1.2 (A:3-115) YheA-like protein {Bacillus stearothermophilus [TaxId: 1422]}
Probab=17.42 E-value=31 Score=18.96 Aligned_cols=13 Identities=38% Similarity=0.613 Sum_probs=11.5
Q ss_pred hHHHHHHHhcCCC
Q psy5754 2 YKKAHENIRADPA 14 (67)
Q Consensus 2 YkkAHaaIR~dP~ 14 (67)
|+.|.++|.+||.
T Consensus 23 ~k~a~~~v~~D~~ 35 (113)
T d2oeqa1 23 LKRAYEDVRRDET 35 (113)
T ss_dssp HHHHHHHHHTCTT
T ss_pred HHHHHHHHHcCHH
Confidence 7889999999995
No 2
>d2iaza1 a.281.1.2 (A:1-111) Hypothetical protein SP1372 {Streptococcus pneumoniae [TaxId: 1313]}
Probab=13.92 E-value=27 Score=19.07 Aligned_cols=13 Identities=38% Similarity=0.460 Sum_probs=11.5
Q ss_pred hHHHHHHHhcCCC
Q psy5754 2 YKKAHENIRADPA 14 (67)
Q Consensus 2 YkkAHaaIR~dP~ 14 (67)
|+.|.++|.+||.
T Consensus 24 ~~~a~~~v~~D~e 36 (111)
T d2iaza1 24 VKAAKDAIAADAE 36 (111)
T ss_dssp HHHHHHHHHHCHH
T ss_pred HHHHHHHHHcCHH
Confidence 7889999999994
No 3
>d1a8ra_ d.96.1.1 (A:) GTP cyclohydrolase I {Escherichia coli [TaxId: 562]}
Probab=13.42 E-value=92 Score=19.50 Aligned_cols=26 Identities=12% Similarity=0.234 Sum_probs=22.7
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHhCcc
Q psy5754 40 KKLTLAQRKERVSTAKANFLKKLGKE 65 (67)
Q Consensus 40 kKLT~~qRk~rv~~K~a~~~~~~~~~ 65 (67)
..++.+++.++|+..+..++..+|.+
T Consensus 28 ~~~~~ee~~~~Ie~av~~iL~alGeD 53 (221)
T d1a8ra_ 28 HEMDNETRKSLIAGHMTEIMQLLNLD 53 (221)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHTTCC
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhhcC
Confidence 36899999999999999999888753
No 4
>d1vqom1 d.12.1.2 (M:1-194) Ribosomal protein L15e {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=10.30 E-value=27 Score=22.16 Aligned_cols=10 Identities=30% Similarity=0.461 Sum_probs=8.4
Q ss_pred HHHHHhcCCC
Q psy5754 5 AHENIRADPA 14 (67)
Q Consensus 5 AHaaIR~dP~ 14 (67)
.|-+||.||.
T Consensus 137 ~h~aIr~D~~ 146 (194)
T d1vqom1 137 NHPAIQNDDD 146 (194)
T ss_dssp TCHHHHTCTT
T ss_pred CCcccccCCc
Confidence 5889999995
No 5
>d2piha1 a.281.1.1 (A:2-124) Uncharacterized protein YmcA {Bacillus subtilis [TaxId: 1423]}
Probab=10.29 E-value=41 Score=18.54 Aligned_cols=13 Identities=23% Similarity=0.511 Sum_probs=11.1
Q ss_pred hHHHHHHHhcCCC
Q psy5754 2 YKKAHENIRADPA 14 (67)
Q Consensus 2 YkkAHaaIR~dP~ 14 (67)
|..|.++|.+||.
T Consensus 28 ~~~a~~~v~~d~e 40 (123)
T d2piha1 28 FKRAEAQINENDK 40 (123)
T ss_dssp HHHHHHHHHHCHH
T ss_pred HHHHHHHHHcCHH
Confidence 7788999999994
No 6
>d2oeea1 a.281.1.2 (A:3-112) Hypothetical protein YheA {Bacillus subtilis [TaxId: 1423]}
Probab=8.49 E-value=52 Score=17.64 Aligned_cols=13 Identities=23% Similarity=0.394 Sum_probs=11.0
Q ss_pred hHHHHHHHhcCCC
Q psy5754 2 YKKAHENIRADPA 14 (67)
Q Consensus 2 YkkAHaaIR~dP~ 14 (67)
|+.|.++|-+||.
T Consensus 23 ~~~a~~~i~~d~~ 35 (110)
T d2oeea1 23 LKNLYDEVNADES 35 (110)
T ss_dssp HHHHHHHHHHSHH
T ss_pred HHHHHHHHHcCHH
Confidence 6788899999994
No 7
>d1ef1c_ a.137.5.1 (C:) Moesin tail domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.00 E-value=1.2e+02 Score=16.63 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=20.7
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHhC
Q psy5754 40 KKLTLAQRKERVSTAKANFLKKLG 63 (67)
Q Consensus 40 kKLT~~qRk~rv~~K~a~~~~~~~ 63 (67)
-+.|+.++..+|+..+.++..++.
T Consensus 20 eR~~~~ek~k~lq~qL~~L~~EL~ 43 (90)
T d1ef1c_ 20 ERTTEAEKNERVQKHLKALTSELA 43 (90)
T ss_dssp GCCCHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHH
Confidence 368999999999999999987764
No 8
>d1ffki_ d.12.1.2 (I:) Ribosomal protein L15e {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=7.18 E-value=27 Score=22.15 Aligned_cols=10 Identities=40% Similarity=0.826 Sum_probs=8.0
Q ss_pred HHHHHhcCCC
Q psy5754 5 AHENIRADPA 14 (67)
Q Consensus 5 AHaaIR~dP~ 14 (67)
.|-+||.||.
T Consensus 137 ~h~aIr~D~~ 146 (194)
T d1ffki_ 137 DHPAIKSDPQ 146 (194)
T ss_pred CCcceeeCCC
Confidence 5788999984
No 9
>d1t95a1 a.5.8.1 (A:87-161) Hypothetical protein AF0491, middle domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=6.22 E-value=2e+02 Score=14.75 Aligned_cols=19 Identities=21% Similarity=0.468 Sum_probs=15.2
Q ss_pred cCCHHHHHHHHHHHHHHHH
Q psy5754 41 KLTLAQRKERVSTAKANFL 59 (67)
Q Consensus 41 KLT~~qRk~rv~~K~a~~~ 59 (67)
.||-+||+.-+.++...+.
T Consensus 6 Qls~~eR~~~~e~k~~~Ii 24 (75)
T d1t95a1 6 QITAEQRREMLEAKRKQII 24 (75)
T ss_dssp CCCHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHH
Confidence 4899999999988876654
No 10
>d1xmeb2 f.17.2.1 (B:3-36) Bacterial ba3 type cytochrome c oxidase subunit II {Thermus thermophilus [TaxId: 274]}
Probab=5.95 E-value=1.1e+02 Score=13.86 Aligned_cols=6 Identities=67% Similarity=0.916 Sum_probs=3.4
Q ss_pred HHHHHH
Q psy5754 4 KAHENI 9 (67)
Q Consensus 4 kAHaaI 9 (67)
+||.+|
T Consensus 4 kahkai 9 (34)
T d1xmeb2 4 KAHKAI 9 (34)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 456555
Done!