Query psy5756
Match_columns 360
No_of_seqs 203 out of 764
Neff 3.3
Searched_HMMs 29240
Date Fri Aug 16 17:14:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5756.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5756hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5e_D 60S ribosomal protein L 100.0 2E-108 6E-113 782.6 13.3 243 45-288 1-244 (297)
2 4a17_M RPL5, 60S ribosomal pro 100.0 1E-107 5E-112 777.3 9.8 244 45-288 1-251 (301)
3 2zkr_n 60S ribosomal protein L 100.0 1E-105 4E-110 763.1 8.5 245 45-289 1-245 (297)
4 3iz5_Q 60S ribosomal protein L 100.0 5E-106 2E-110 766.6 1.2 242 44-289 4-245 (304)
5 3j21_O 50S ribosomal protein L 100.0 5.4E-72 1.9E-76 510.2 1.6 186 55-288 2-189 (203)
6 1vq8_N 50S ribosomal protein L 100.0 6.1E-64 2.1E-68 452.5 9.1 175 55-288 2-177 (187)
7 3r8s_O 50S ribosomal protein L 100.0 1.6E-30 5.6E-35 219.1 6.0 104 75-216 12-115 (116)
8 1ovy_A 50S ribosomal protein L 100.0 2.5E-30 8.6E-35 219.5 4.7 95 90-217 26-120 (120)
9 3v2d_S 50S ribosomal protein L 99.9 1E-28 3.5E-33 207.7 6.8 91 90-216 21-111 (112)
10 2zjr_L 50S ribosomal protein L 99.9 2.5E-29 8.5E-34 212.0 -1.7 91 90-217 24-114 (114)
11 3bbo_Q Ribosomal protein L18; 99.9 8.2E-28 2.8E-32 213.2 1.1 95 90-216 63-160 (161)
12 4gmn_B 60S ribosomal protein L 99.9 2.8E-25 9.7E-30 162.6 1.1 42 45-86 1-42 (49)
13 2vqe_K 30S ribosomal protein S 90.5 0.9 3.1E-05 38.8 7.8 63 89-156 13-75 (129)
14 3j20_M 30S ribosomal protein S 90.5 1.1 3.9E-05 38.7 8.5 107 92-227 14-131 (137)
15 3bbn_K Ribosomal protein S11; 87.3 1.1 3.7E-05 38.9 6.2 63 89-156 26-88 (140)
16 3u5c_O RP59A, 40S ribosomal pr 83.9 0.83 2.9E-05 39.5 3.7 103 93-226 15-130 (137)
17 3r8n_K 30S ribosomal protein S 81.9 2.9 9.9E-05 35.1 6.2 62 90-156 4-65 (117)
18 2xzm_K RPS14E; ribosome, trans 80.1 2.5 8.5E-05 37.1 5.4 106 92-226 28-144 (151)
19 3twe_A Alpha4H; unknown functi 26.3 22 0.00074 23.1 0.9 18 308-325 9-26 (27)
No 1
>3u5e_D 60S ribosomal protein L5; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_D 4b6a_D 3izc_Q 3izs_Q 3o58_E 3o5h_E 3jyw_E 1s1i_E
Probab=100.00 E-value=1.8e-108 Score=782.64 Aligned_cols=243 Identities=53% Similarity=0.921 Sum_probs=236.3
Q ss_pred cceEEEeeccCCcccccccccccccCCchHHHHHHHHHhCCCCCCCCcceEEEEecCCcEEEEEEeeecCCCEEEEEEec
Q psy5756 45 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLIVQDKNKYNTPKYRLIVRFSNKDITCQVAYSRIEGDHIICSAYS 124 (360)
Q Consensus 45 M~fvKv~KnkaYfkRyqVKfRRRREGKTDY~~R~kLi~qdKnKyntpKpRLVVrrSNrhIyAQIId~~~eGD~tLaSAsS 124 (360)
|+||||+||+|||+|||||||||||||||||+|++||+|||||||||+||||||+||+|||||||+++++||+|||||||
T Consensus 1 m~fvkvvknkaYf~ryqvkfRRRReGKTdY~~R~rLi~qdknKynt~kpRLvV~rSNrhIyAQIIdd~~~Gd~tLaSASS 80 (297)
T 3u5e_D 1 MAFQKDAKSSAYSSRFQTPFRRRREGKTDYYQRKRLVTQHKAKYNTPKYRLVVRFTNKDIICQIISSTITGDVVLAAAYS 80 (297)
T ss_dssp -CCTTSCCCHHHHHTCCCCCSTTTTTCCCHHHHHHHHCCCGGGTTCCCCEEEEEEETTEEEEEEEECCTTCCEEEEEEEG
T ss_pred CCceeeeeccccccccccchhhhccccccHHHHHHHHHccccccCCCCceEEEEEcCCeEEEEEeecCCCCCEEEEEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999998889999999999
Q ss_pred CCccccccccCCCcHHHHHHHHHHHHHHHHhhcCccccccccccccccceeecccCCCCCceEEEEeecccccccCceeE
Q psy5756 125 HELPKYGIKVGLTNYAAAYATGLLLARRLLKNLNLDRLYVGCTEVTGEEFSVESVDKGPGAFRCYLDVGLMKTSTGAKVF 204 (360)
Q Consensus 125 ~EL~kyG~k~g~tN~aAAYltGlLlAkRALkk~gld~~Y~G~~ev~ge~~~vE~~dg~~~~f~avLDiGL~RtT~G~RVF 204 (360)
+||+++||+++++|++|||+||+|||+||+++||||++|+|++|+|||+|+||++||+|++|+||||+||+|||+|||||
T Consensus 81 ~El~k~g~k~~~~N~~AAy~vG~LiAeRAl~k~~ld~~y~G~~e~~g~~~~ve~~~~~~~~f~~~LDvGl~rtttG~RVf 160 (297)
T 3u5e_D 81 HELPRYGITHGLTNWAAAYATGLLIARRTLQKLGLDETYKGVEEVEGEYELTEAVEDGPRPFKVFLDIGLQRTTTGARVF 160 (297)
T ss_dssp GGGGGGTCCSCTTSHHHHHHHHHHHHHHHHHHTSTTSSCCCCSSCCCCCCCCCCCSSSCCCCBCEEECTTCCCCTTCSHH
T ss_pred cchhhcccCCCCCcHHHHHHHHHHHHHHHHHhhCCcccccCccccccceeccccccCCCCceeEEEecCCCccCccceeh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeccccccceecccCCcccCCCCCCCCCCCHHHHhhcccCCcHHHHHHHhcccCHHHHHHHHHHHHhCCCCCch-hhcc
Q psy5756 205 GAMKGAVDGGLNIPHSVKRFPGYDNESKDFNAEIHRKHIFGLHVAEYMRQLSEEDDEAFKRQFSERVGGWGTLSE-QLGM 283 (360)
Q Consensus 205 AalKGAvDgGL~IPHsekrfPg~d~e~ke~naEvhr~rI~G~HVAdYm~~LkEEDee~YkkQFS~YiK~~~~~~~-~~~m 283 (360)
||||||+||||+||||+++|||||+|+|+||||+|++||+|+|||+||++|+|||||+|++|||+||++ |++|+ .++|
T Consensus 161 aalKGA~DgGL~IPhs~~~fpg~d~e~k~~~ae~~~~~I~G~hVa~Ym~~L~eedee~yk~qFs~yik~-~i~~~~~e~~ 239 (297)
T 3u5e_D 161 GALKGASDGGLYVPHSENRFPGWDFETEEIDPELLRSYIFGGHVSQYMEELADDDEERFSELFKGYLAD-DIDADSLEDI 239 (297)
T ss_dssp HHHHHHHHHTCBCCCCSTTSSSEETTTTEECHHHHHHHHTTHHHHHHHHHTTTTCHHHHHHTTHHHHHT-TCCGGGHHHH
T ss_pred hhhhcccccCcccCCCcccccCccccccccCHHHHHHHhcCccHHHHHHHHhhhCHHHHHHHHHHHHHc-CCChhHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 55555 4599
Q ss_pred hhhhc
Q psy5756 284 TKSSF 288 (360)
Q Consensus 284 ~~~~~ 288 (360)
|+++.
T Consensus 240 y~~~h 244 (297)
T 3u5e_D 240 YTSAH 244 (297)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99875
No 2
>4a17_M RPL5, 60S ribosomal protein L5; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_M 4a1c_M 4a1e_M
Probab=100.00 E-value=1.4e-107 Score=777.28 Aligned_cols=244 Identities=51% Similarity=0.897 Sum_probs=237.9
Q ss_pred cceEEEeeccCCcccccccccccccCCchHHHHHHHHHhCCCCCCCCcceEEEEecCCcEEEEEEeeecCCCEEEEEEec
Q psy5756 45 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLIVQDKNKYNTPKYRLIVRFSNKDITCQVAYSRIEGDHIICSAYS 124 (360)
Q Consensus 45 M~fvKv~KnkaYfkRyqVKfRRRREGKTDY~~R~kLi~qdKnKyntpKpRLVVrrSNrhIyAQIId~~~eGD~tLaSAsS 124 (360)
|+||||+||+|||+|||||||||||||||||+|++||+||||||||||||||||+||+|||||||+++++||+|||||||
T Consensus 1 m~fvkvvknkaYf~ryqvkfRRRReGKTdY~~R~rlv~qdknKynspkpRLvV~rSNrhIyAQIIdd~~~Gd~tLaSASS 80 (301)
T 4a17_M 1 MGFVKVLKTKAYFKRFQTKYRRRREGLTDYYARKRLIIQDKDKYNTPKYRLVARATNTRIIAQIVYATLKCDRVLCAADS 80 (301)
T ss_dssp -CCCCCCSCHHHHHHCCCCCHHHHTTCCCHHHHHHHHCCCTTSCSCCCEEEEEEECSSCEEEEEEEECSSCEEEEEEEET
T ss_pred CCceeeeeccccccccccchhhcccccccHHHHHHHHHccccccCCCCceEEEEEcCCeEEEEEeecCCCCCEEEEEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999998889999999999
Q ss_pred CCccccccccCCCcHHHHHHHHHHHHHHHHhhcCccccccccccccccceeecccCCCCCceEEEEeecccccccCceeE
Q psy5756 125 HELPKYGIKVGLTNYAAAYATGLLLARRLLKNLNLDRLYVGCTEVTGEEFSVESVDKGPGAFRCYLDVGLMKTSTGAKVF 204 (360)
Q Consensus 125 ~EL~kyG~k~g~tN~aAAYltGlLlAkRALkk~gld~~Y~G~~ev~ge~~~vE~~dg~~~~f~avLDiGL~RtT~G~RVF 204 (360)
+||+++||+++++|++|||+||+|||+||+++||||++|+|++|+|||+|+||++||+|++|+||||+||+|||+|||||
T Consensus 81 ~El~~~g~k~~~~N~~AAy~vG~LiAeRAl~k~~~d~~y~G~~e~~g~~~~ve~~~~~~~~f~~~LD~Gl~rtt~G~RVf 160 (301)
T 4a17_M 81 YELKRFGVSTGLASYAAAYATGLLLARRLLKQIGLDTVYAGQTKVDGAYFNVDEDQKEKKPFKAILDAGLVRTTTGNRVF 160 (301)
T ss_dssp THHHHTTCCSCTTSHHHHHHHHHHHHHHHHHHHTCTTTCCCCSSCCCSCCCGGGTCCSSCCCBCEEECTTSCCCSSCHHH
T ss_pred ccchhccccCCCCcHHHHHHHHHHHHHHHHHhcCCcccccCccccccceeecccccCCCCceEEEEecCCcccCcccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeccccccceecccCCcccCCCCCCC-----CCCCHHHHhhcccCCcHHHHHHHhcccCHHHHHHHHHHHHhC--CCCC
Q psy5756 205 GAMKGAVDGGLNIPHSVKRFPGYDNES-----KDFNAEIHRKHIFGLHVAEYMRQLSEEDDEAFKRQFSERVGG--WGTL 277 (360)
Q Consensus 205 AalKGAvDgGL~IPHsekrfPg~d~e~-----ke~naEvhr~rI~G~HVAdYm~~LkEEDee~YkkQFS~YiK~--~~~~ 277 (360)
||||||+||||+||||+++|||||+|+ |+||||+||+||+|+|||+||++|+|||||+|++|||+||++ +..+
T Consensus 161 aalKGA~DgGL~IPhs~~~fpg~~~e~~~~~~k~~~ae~~r~~I~G~hVa~Ym~~L~eedee~yk~qFs~yik~~~~i~~ 240 (301)
T 4a17_M 161 GVLKGACDGGINIPHSESRFPGYVRASDEGESSKYKPEDHKARIFGKHIDAYMKHLKGQSNEAFQKQFSKWSKTLEAAKV 240 (301)
T ss_dssp HHHHHHHHTTCBCCCCSSSSSSEEECCSSCCCEEECHHHHHHHHHTHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHTTC
T ss_pred hhhhcccccCcccCCCCccCCCcccccccccccccCHHHHHHHhcCccHHHHHHHhhhhCHHHHHHHHHHHHhhccCCCh
Confidence 999999999999999999999999987 999999999999999999999999999999999999999998 7777
Q ss_pred chhhcchhhhc
Q psy5756 278 SEQLGMTKSSF 288 (360)
Q Consensus 278 ~~~~~m~~~~~ 288 (360)
...++||+++.
T Consensus 241 ~~~e~~y~~~h 251 (301)
T 4a17_M 241 DSVEKLFTKVH 251 (301)
T ss_dssp SCHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 77779999875
No 3
>2zkr_n 60S ribosomal protein L5; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=1.1e-105 Score=763.07 Aligned_cols=245 Identities=70% Similarity=1.171 Sum_probs=227.0
Q ss_pred cceEEEeeccCCcccccccccccccCCchHHHHHHHHHhCCCCCCCCcceEEEEecCCcEEEEEEeeecCCCEEEEEEec
Q psy5756 45 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLIVQDKNKYNTPKYRLIVRFSNKDITCQVAYSRIEGDHIICSAYS 124 (360)
Q Consensus 45 M~fvKv~KnkaYfkRyqVKfRRRREGKTDY~~R~kLi~qdKnKyntpKpRLVVrrSNrhIyAQIId~~~eGD~tLaSAsS 124 (360)
|+||||+||+|||+|||||||||||||||||+|++||.||||||||||||||||+||+|||||||++.++||+|||||||
T Consensus 1 m~fvkv~kn~aYf~Ryqvk~RRRReGKTdY~~R~rLi~qdknkynt~kpRLvVrrSNk~I~aQII~~~~~gd~tLasAsS 80 (297)
T 2zkr_n 1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCARYA 80 (297)
T ss_dssp ----------CCSTTCCCCCHHHHTTCSCHHHHHHHHCCCSTTCSCCSEEEEEEEETTEEEEEEEECCSSSCEEEEEEEG
T ss_pred CCceeeeeccccccccccchhhhccccchHHHHHHHHhcCCcccCCCCceEEEEEecCcEEEEEEeccCCCCEEEEEeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccccCCCcHHHHHHHHHHHHHHHHhhcCccccccccccccccceeecccCCCCCceEEEEeecccccccCceeE
Q psy5756 125 HELPKYGIKVGLTNYAAAYATGLLLARRLLKNLNLDRLYVGCTEVTGEEFSVESVDKGPGAFRCYLDVGLMKTSTGAKVF 204 (360)
Q Consensus 125 ~EL~kyG~k~g~tN~aAAYltGlLlAkRALkk~gld~~Y~G~~ev~ge~~~vE~~dg~~~~f~avLDiGL~RtT~G~RVF 204 (360)
+||+++||+++++|++|||+||+|||+|||++||||++|+|++|+|||+|+||+.||+|+||+||||+||++||+|||||
T Consensus 81 ~El~kyg~k~g~tN~aAAy~tGlLlArRal~k~~ld~~y~G~~e~~g~~~~ve~~~~~~gi~~vvfDrGl~ryttggRVf 160 (297)
T 2zkr_n 81 HELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVTGDEYNVESIDGQPGAFTCYLDAGLARTTTGNKVF 160 (297)
T ss_dssp GGGGGTCCCSCSSSHHHHHHHHHHHHHHHHCCCSCCCCCSSCCSSSSCCCCCSSSCSSSCCCBEEEECTTSCCCTTCHHH
T ss_pred CcccccccccCCCcHHHHHHHHHHHHHHHHHhhccchhhcCccccccccccccccccCCCceEEEEecCCcccCCCchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeccccccceecccCCcccCCCCCCCCCCCHHHHhhcccCCcHHHHHHHhcccCHHHHHHHHHHHHhCCCCCchhhcch
Q psy5756 205 GAMKGAVDGGLNIPHSVKRFPGYDNESKDFNAEIHRKHIFGLHVAEYMRQLSEEDDEAFKRQFSERVGGWGTLSEQLGMT 284 (360)
Q Consensus 205 AalKGAvDgGL~IPHsekrfPg~d~e~ke~naEvhr~rI~G~HVAdYm~~LkEEDee~YkkQFS~YiK~~~~~~~~~~m~ 284 (360)
|+||||+||||+||||+++|||||+|+|+||||+||+||+|+|||+||++|+|||||+|++|||+||+++..+...++||
T Consensus 161 a~akGArDgGL~~Phs~~~fpg~d~e~k~~~ae~~r~rI~G~hVa~Ym~~L~eedee~yk~qFs~yik~gi~~~~le~~y 240 (297)
T 2zkr_n 161 GALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMGQNVADYMRYLMEEDEDAYKKQFSQYIKNSVTPDMMEEMY 240 (297)
T ss_dssp HHHHHHHHTTCBCCCCGGGSCCCCCCCCCC-CCCCCSSSSSSHHHHHHHTCSSSCTTTCSSCEEEEETTEEESSCCSHHH
T ss_pred HHHHHHHhcCcccCCCCccCCCCCccccccCHHHHHHhhCCeeHHHHHHHhhhcCHHHHHHHHHHHHHCCCChhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999944444455999
Q ss_pred hhhcc
Q psy5756 285 KSSFK 289 (360)
Q Consensus 285 ~~~~~ 289 (360)
+++..
T Consensus 241 ~~~~~ 245 (297)
T 2zkr_n 241 KKAHA 245 (297)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98653
No 4
>3iz5_Q 60S ribosomal protein L5 (L18P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Q
Probab=100.00 E-value=5.5e-106 Score=766.65 Aligned_cols=242 Identities=56% Similarity=0.923 Sum_probs=234.5
Q ss_pred ccceEEEeeccCCcccccccccccccCCchHHHHHHHHHhCCCCCCCCcceEEEEecCCcEEEEEEeeecCCCEEEEEEe
Q psy5756 44 EMGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLIVQDKNKYNTPKYRLIVRFSNKDITCQVAYSRIEGDHIICSAY 123 (360)
Q Consensus 44 ~M~fvKv~KnkaYfkRyqVKfRRRREGKTDY~~R~kLi~qdKnKyntpKpRLVVrrSNrhIyAQIId~~~eGD~tLaSAs 123 (360)
-|+||||+||+|||+|||||||||||||||||+|++||+|||||||||||||| ||+|||||||++.++||+||||||
T Consensus 4 ~~~fvKvvKnkaYf~RyqvkfRRRREGKTdY~~R~rLi~qdknKyntpKpRLV---SNrhIyaQII~~~i~GD~tLaSAs 80 (304)
T 3iz5_Q 4 QGGFVKTQKTHAYFKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFV---TNKDITAQIVYATIAGDIVMAAAY 80 (304)
T ss_dssp CSSHHHHTTTBHHHHHHHSSCHHHHHTCCCHHHHHHHHTTSCCEEECCCSSSS---CSSCCEEEEEEEETTEEEEEEEEE
T ss_pred ccceeeeeeccccccccccchhhcccccccHHHHHHHHHcCccccCCCCceee---cCCcEEEEEEecCCCCCEEEEEEe
Confidence 39999999999999999999999999999999999999999999999999999 999999999999889999999999
Q ss_pred cCCccccccccCCCcHHHHHHHHHHHHHHHHhhcCccccccccccccccceeecccCCCCCceEEEEeecccccccCcee
Q psy5756 124 SHELPKYGIKVGLTNYAAAYATGLLLARRLLKNLNLDRLYVGCTEVTGEEFSVESVDKGPGAFRCYLDVGLMKTSTGAKV 203 (360)
Q Consensus 124 S~EL~kyG~k~g~tN~aAAYltGlLlAkRALkk~gld~~Y~G~~ev~ge~~~vE~~dg~~~~f~avLDiGL~RtT~G~RV 203 (360)
|+||+++||+++++|++|||+||+|||+|||++||||++|+|++|+|||+|+||+ ||+|++|+||||+||+|||+||||
T Consensus 81 S~EL~kyG~k~g~~N~aAAy~tGlLiA~RAl~k~~ld~~y~G~~e~~g~~~~ve~-~~~~~~f~~~LDiGL~rtttG~RV 159 (304)
T 3iz5_Q 81 SHELPRYGLEVGLTNYAAAYCTGLLLARRVLTLRGLDQEYEGNVEATGEDYYVEP-ADERRPFRALLDVGLIRTTTGNRV 159 (304)
T ss_dssp TTTGGGGSCCSCTTSHHHHHHHHHHHHHHHHTTCSSCCCCCSSSCCCSCCCSSCC-SSCSCCCSCEEECTTCCCCSSCHH
T ss_pred cCchhhcccCCCCCcHHHHHHHHHHHHHHHHHhhCCccccCCccccccceecccc-cCCCCCceEEEecCCcccccCcee
Confidence 9999999999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred EEeeccccccceecccCCcccCCCCCCCCCCCHHHHhhcccCCcHHHHHHHhcccCHHHHHHHHHHHHhCCCCCchhhcc
Q psy5756 204 FGAMKGAVDGGLNIPHSVKRFPGYDNESKDFNAEIHRKHIFGLHVAEYMRQLSEEDDEAFKRQFSERVGGWGTLSEQLGM 283 (360)
Q Consensus 204 FAalKGAvDgGL~IPHsekrfPg~d~e~ke~naEvhr~rI~G~HVAdYm~~LkEEDee~YkkQFS~YiK~~~~~~~~~~m 283 (360)
|||||||+||||+||||+++|||||+|+|+||||+|++||+|+|||+||++|+|||||+|++|||+||+++..+...++|
T Consensus 160 faalKGA~DgGL~IPhs~~~fpg~d~e~k~~~aev~~~~I~G~hVa~Ym~~L~eedee~yk~qFs~yik~~i~~~~le~~ 239 (304)
T 3iz5_Q 160 FGALKGALDGGLDIPHSDKRFAGFKKDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEKFQAHFSEYLKKGIDADGMESL 239 (304)
T ss_dssp HHHHHHHHTTTCCCCCCSSSCCCGGGTSSCCCCSSSCCSCSSSSTHHHHHSCCCCCSSCCSHHHHHHHHHHHSCCCCCCC
T ss_pred EEeeccccccCcccCCCcccccCccccccccCHHHHHHHHcCccHHHHHHhccccCHHHHHHHHHHHHHcCCChhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999994444445599
Q ss_pred hhhhcc
Q psy5756 284 TKSSFK 289 (360)
Q Consensus 284 ~~~~~~ 289 (360)
|+++..
T Consensus 240 y~~~h~ 245 (304)
T 3iz5_Q 240 YKKVHA 245 (304)
T ss_dssp CCCCCC
T ss_pred HHHHHH
Confidence 998764
No 5
>3j21_O 50S ribosomal protein L18P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=5.4e-72 Score=510.24 Aligned_cols=186 Identities=39% Similarity=0.555 Sum_probs=174.9
Q ss_pred CCcccccccccccccCCchHHHHHHHHHhCCCCCCCCcceEEEEecCCcEEEEEEeeecCCCEEEEEEecCCcc-ccccc
Q psy5756 55 QYFKRYQVKFKRRREGKTDYYARKRLIVQDKNKYNTPKYRLIVRFSNKDITCQVAYSRIEGDHIICSAYSHELP-KYGIK 133 (360)
Q Consensus 55 aYfkRyqVKfRRRREGKTDY~~R~kLi~qdKnKyntpKpRLVVrrSNrhIyAQIId~~~eGD~tLaSAsS~EL~-kyG~k 133 (360)
|--|||||||||||||||||++|++|++|++ |||+||+||+|||||||+++++||+|||||||+|++ ++||+
T Consensus 2 a~g~ry~vk~rrRregkt~y~~R~rl~~~~k-------pRL~V~rSnkhIyAQIId~d~~g~~tLasAST~El~lk~g~~ 74 (203)
T 3j21_O 2 AHGPRYRVPFRRRREGKTNYRKRLKLLKSGK-------PRLVVRKSLNHHIAQIIVYDPKGDRTLVSAHTRELIRDFGWK 74 (203)
T ss_dssp TTTTCSCCCCHHHHHTCCCHHHHHHHHTTCC-------CEEEEEECSSCEEEEEEECCTTSCEEEEEECSTTTSSSSSCC
T ss_pred CCCCccccchhhHHHHhHHHHHHHHHHhcCC-------CEEEEEEeCCeEEEEEEEecCCCCeEEEEEEccchhhhhccc
Confidence 3458999999999999999999999999996 999999999999999999778899999999999999 79999
Q ss_pred cCCCcHHHHHHHHHHHHHHHHhhcCccccccccccccccceeecccCCCCCceEEEEeecccccccCceeEEeecccccc
Q psy5756 134 VGLTNYAAAYATGLLLARRLLKNLNLDRLYVGCTEVTGEEFSVESVDKGPGAFRCYLDVGLMKTSTGAKVFGAMKGAVDG 213 (360)
Q Consensus 134 ~g~tN~aAAYltGlLlAkRALkk~gld~~Y~G~~ev~ge~~~vE~~dg~~~~f~avLDiGL~RtT~G~RVFAalKGAvDg 213 (360)
.+++|++|||+||+|||+||+++ | +.+||||+|++++|+||||||+++||+||
T Consensus 75 ~~~~N~~AA~~vG~llA~Ral~k--------G-------------------I~~vvfDrgg~~y~~hgRV~Ala~gAre~ 127 (203)
T 3j21_O 75 GHCGNTPSAYLLGLLIGYKAKQA--------G-------------------IEEAILDIGLHPPVRGSSVFAVLKGAVDA 127 (203)
T ss_dssp SCTTSHHHHHHHHHHSSSSTTSS--------C-------------------CCCCEEECCSSCCCTTSHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHhC--------C-------------------CCEEEEecCcceeccCcchhhhhhhcccC
Confidence 99999999999999999999998 4 77899999999999999999999999999
Q ss_pred ceecccCCcccCCCCCCCCCCCHHHHhhcccCCcHHHHHHHhcccCHHHHHHHHHHHHhCCCCCchh-hcchhhhc
Q psy5756 214 GLNIPHSVKRFPGYDNESKDFNAEIHRKHIFGLHVAEYMRQLSEEDDEAFKRQFSERVGGWGTLSEQ-LGMTKSSF 288 (360)
Q Consensus 214 GL~IPHsekrfPg~d~e~ke~naEvhr~rI~G~HVAdYm~~LkEEDee~YkkQFS~YiK~~~~~~~~-~~m~~~~~ 288 (360)
||+||||+++|||+ +||+|+|||+||++|+|||||+|++|||+|||+ |++|++ ++||++..
T Consensus 128 GL~iPhs~~~fp~~-------------~ri~G~hva~y~~~L~eed~e~yk~qFs~yik~-~~~~~~~~~~~~~~~ 189 (203)
T 3j21_O 128 GLNVPHSPEIFPDE-------------YRIRGEHIAEYAKMLKEQDEEKFRRQFGGYLVK-GLDPEKLPEHFEEVK 189 (203)
T ss_dssp TCCCCCCSSCSCCH-------------HHHHTCHHHHHHHHCCSSCCCSSSCCCSCSCCC-SSSSSCCHHHHHHHH
T ss_pred CeecccCCccCCCc-------------ccccCccHHHHHHHhhhhCHHHHHHHHHHHHHc-CCChhHHHHHHHHHH
Confidence 99999999999995 799999999999999999999999999999999 555554 59998764
No 6
>1vq8_N 50S ribosomal protein L18P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.55.4.1 PDB: 1vq4_N* 1vq5_N* 1vq6_N* 1vq7_N* 1s72_N* 1vq9_N* 1vqk_N* 1vql_N* 1vqm_N* 1vqn_N* 1vqo_N* 1vqp_N* 1yhq_N* 1yi2_N* 1yij_N* 1yit_N* 1yj9_N* 1yjn_N* 1yjw_N* 2otj_N* ...
Probab=100.00 E-value=6.1e-64 Score=452.53 Aligned_cols=175 Identities=36% Similarity=0.526 Sum_probs=162.2
Q ss_pred CCcccccccccccccCCchHHHHHHHHHhCCCCCCCCcceEEEEecCCcEEEEEEeeecCCCEEEEEEecCCcccccccc
Q psy5756 55 QYFKRYQVKFKRRREGKTDYYARKRLIVQDKNKYNTPKYRLIVRFSNKDITCQVAYSRIEGDHIICSAYSHELPKYGIKV 134 (360)
Q Consensus 55 aYfkRyqVKfRRRREGKTDY~~R~kLi~qdKnKyntpKpRLVVrrSNrhIyAQIId~~~eGD~tLaSAsS~EL~kyG~k~ 134 (360)
|--||||||||||||||||||+|++|+.+++ |||+||+||+|||||||+++++||+|||||||+|++++||+.
T Consensus 2 a~g~ry~vk~rrrregkTdy~~R~rl~~~~r-------pRL~V~rSnkhIyAQII~~dd~~~~tlasAsT~e~~k~~~k~ 74 (187)
T 1vq8_N 2 ATGPRYKVPMRRRREARTDYHQRLRLLKSGK-------PRLVARKSNKHVRAQLVTLGPNGDDTLASAHSSDLAEYGWEA 74 (187)
T ss_dssp CCSTTCCCCCHHHHTTCCCHHHHHHHHTTCS-------CEEEEEECSSCEEEEEEECCTTSCEEEEEEESGGGGGGTCCS
T ss_pred CCCCcccccccchhccchhHHHHHHHHhcCC-------CEEEEEEeCCcEEEEEEEecCCCCEEEEEEEccchhcccccc
Confidence 3458999999999999999999999999987 999999999999999997778899999999999999889987
Q ss_pred CCCcHHHHHHHHHHHHHHHHhhcCccccccccccccccceeecccCCCCCceEEEEeecccccccCceeEEeeccccccc
Q psy5756 135 GLTNYAAAYATGLLLARRLLKNLNLDRLYVGCTEVTGEEFSVESVDKGPGAFRCYLDVGLMKTSTGAKVFGAMKGAVDGG 214 (360)
Q Consensus 135 g~tN~aAAYltGlLlAkRALkk~gld~~Y~G~~ev~ge~~~vE~~dg~~~~f~avLDiGL~RtT~G~RVFAalKGAvDgG 214 (360)
+++|++|||+||+|||+||+++ | +.+||||+|++++++|+||||+++||+|+|
T Consensus 75 ~~~N~~AA~~vG~llA~Ral~k--------G-------------------I~~vvfDrgg~~yh~GgRV~Ala~gAre~G 127 (187)
T 1vq8_N 75 PTGNMPSAYLTGLLAGLRAQEA--------G-------------------VEEAVLDIGLNSPTPGSKVFAIQEGAIDAG 127 (187)
T ss_dssp CSSSHHHHHHHHHHHHHHHHHT--------T-------------------CCBCEEECTTSCCCTTCHHHHHHHHHHHTT
T ss_pred CCCcHHHHHHHHHHHHHHHHHC--------C-------------------CCEEEEcCCCceeccchHHHHHHHHhhcCC
Confidence 8999999999999999999999 4 778999999999999999999999999999
Q ss_pred eecccCCcccCCCCCCCCCCCHHHHhhcccCCcHHHHHHHhcccCHHHHHHHHHHHHhCCCCCchhh-cchhhhc
Q psy5756 215 LNIPHSVKRFPGYDNESKDFNAEIHRKHIFGLHVAEYMRQLSEEDDEAFKRQFSERVGGWGTLSEQL-GMTKSSF 288 (360)
Q Consensus 215 L~IPHsekrfPg~d~e~ke~naEvhr~rI~G~HVAdYm~~LkEEDee~YkkQFS~YiK~~~~~~~~~-~m~~~~~ 288 (360)
|++|||+++|||+ +||+|+||||||++|. | +|||+ |++|+++ +||+++.
T Consensus 128 L~fph~~~~fp~~-------------~ri~G~hva~y~~~l~---~--------~y~~~-~~~~~~l~~~~~~~~ 177 (187)
T 1vq8_N 128 LDIPHNDDVLADW-------------QRTRGAHIAEYDEQLE---E--------PLYSG-DFDAADLPEHFDELR 177 (187)
T ss_dssp CBCCCCGGGSCCH-------------HHHHTHHHHHHHHSCS---S--------CSSSS-CSCSSCCHHHHHHHH
T ss_pred EeccCCCccCCCC-------------ceeccEEHHHHHHHhh---H--------HHHHC-CCCHHHHHHHHHHHH
Confidence 9999999999996 7999999999999994 2 89999 6666554 8988753
No 7
>3r8s_O 50S ribosomal protein L18; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_O 3j19_O 2wwq_O 3oat_O* 3oas_O* 3ofd_O 3ofc_O 3ofr_O* 3ofz_O* 3og0_O 3ofq_O 3r8t_O 3i1n_O 1p85_M 1p86_M 1vs8_O 1vs6_O 2aw4_O 2awb_O 1vt2_O ...
Probab=99.96 E-value=1.6e-30 Score=219.14 Aligned_cols=104 Identities=25% Similarity=0.229 Sum_probs=95.3
Q ss_pred HHHHHHHHhCCCCCCCCcceEEEEecCCcEEEEEEeeecCCCEEEEEEecCCccccccccCCCcHHHHHHHHHHHHHHHH
Q psy5756 75 YARKRLIVQDKNKYNTPKYRLIVRFSNKDITCQVAYSRIEGDHIICSAYSHELPKYGIKVGLTNYAAAYATGLLLARRLL 154 (360)
Q Consensus 75 ~~R~kLi~qdKnKyntpKpRLVVrrSNrhIyAQIId~~~eGD~tLaSAsS~EL~kyG~k~g~tN~aAAYltGlLlAkRAL 154 (360)
+-|++|..+ ++|||+|++||+|||||||++ ++|+|||||||+|++.++|..+++|++|||+||++||+||+
T Consensus 12 r~R~ki~~~-------~rpRL~V~rSnkhIyAQiidd--~~g~tlasAST~e~~~~~~~~~~~n~~AA~~vG~llA~Ral 82 (116)
T 3r8s_O 12 RARRKLQEL-------GATRLVVHRTPRHIYAQVIAP--NGSEVLVAASTVEKAIAEQLKYTGNKDAAAAVGKAVAERAL 82 (116)
T ss_dssp HHHHHHHTT-------TCCEEEEEECSSCEEEEEECT--TSSCEEEECCSSSHHHHTTCSCSSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccC-------CCCEEEEEEeCCEEEEEEEEc--CCCeEEEEEeeCchhhccccCCCCCHHHHHHHHHHHHHHHH
Confidence 456666543 569999999999999999985 69999999999999999999899999999999999999999
Q ss_pred hhcCccccccccccccccceeecccCCCCCceEEEEeecccccccCceeEEeecccccccee
Q psy5756 155 KNLNLDRLYVGCTEVTGEEFSVESVDKGPGAFRCYLDVGLMKTSTGAKVFGAMKGAVDGGLN 216 (360)
Q Consensus 155 kk~gld~~Y~G~~ev~ge~~~vE~~dg~~~~f~avLDiGL~RtT~G~RVFAalKGAvDgGL~ 216 (360)
++ | +.+++||+|++++ |+||+|+++||+|+||+
T Consensus 83 ~~--------G-------------------I~~vvfDrgg~~y--hGrV~Ala~~are~Gl~ 115 (116)
T 3r8s_O 83 EK--------G-------------------IKDVSFDRSGFQY--HGRVQALADAAREAGLQ 115 (116)
T ss_dssp TT--------T-------------------CCCCEEECTTSCS--SSHHHHHHHHHHHTTCC
T ss_pred HC--------C-------------------CCEEEEecCCCcc--cHHHHHHHHHHHHhCCC
Confidence 98 5 7789999999999 99999999999999996
No 8
>1ovy_A 50S ribosomal protein L18; ribosome; NMR {Geobacillus stearothermophilus} SCOP: c.55.4.1
Probab=99.96 E-value=2.5e-30 Score=219.52 Aligned_cols=95 Identities=29% Similarity=0.296 Sum_probs=87.1
Q ss_pred CCcceEEEEecCCcEEEEEEeeecCCCEEEEEEecCCccccccccCCCcHHHHHHHHHHHHHHHHhhcCccccccccccc
Q psy5756 90 TPKYRLIVRFSNKDITCQVAYSRIEGDHIICSAYSHELPKYGIKVGLTNYAAAYATGLLLARRLLKNLNLDRLYVGCTEV 169 (360)
Q Consensus 90 tpKpRLVVrrSNrhIyAQIId~~~eGD~tLaSAsS~EL~kyG~k~g~tN~aAAYltGlLlAkRALkk~gld~~Y~G~~ev 169 (360)
+++|||+|++||+|||||||++ ++|+|||||||+|++ ++ ..+++|++|||+||+|||+||+++ |
T Consensus 26 ~~rpRL~V~rSnkhIyAQiidd--~~~~tl~sAsT~e~~-~~-~~~~~n~~AA~~vG~llA~Ral~~--------G---- 89 (120)
T 1ovy_A 26 TERPRLSVFRSNKHIYAQIIDD--TKSATIVSASTLDKE-FG-LDSTNNIEAAKKVGELVAKRALEK--------G---- 89 (120)
T ss_dssp SSCCSEEEEEETTEEEEEEECC--SSCCCEEEESTTSTT-TC-SSCTTSHHHHHHHHHHHHHHHHHH--------S----
T ss_pred CCCCEEEEEEeCCeEEEEEEEc--CCCEEEEEEecCchh-hC-cCCCCcHHHHHHHHHHHHHHHHHC--------C----
Confidence 6789999999999999999985 699999999999998 44 447899999999999999999999 5
Q ss_pred cccceeecccCCCCCceEEEEeecccccccCceeEEeeccccccceec
Q psy5756 170 TGEEFSVESVDKGPGAFRCYLDVGLMKTSTGAKVFGAMKGAVDGGLNI 217 (360)
Q Consensus 170 ~ge~~~vE~~dg~~~~f~avLDiGL~RtT~G~RVFAalKGAvDgGL~I 217 (360)
+.+|+||+|+++| |+||+|+++||+|+||+.
T Consensus 90 ---------------I~~vvfDrgg~~y--hgrV~ala~~are~GL~f 120 (120)
T 1ovy_A 90 ---------------IKQVVFDRGGYLY--HGRVKALADAAREAGLEF 120 (120)
T ss_dssp ---------------SSCCCCCSTTCSS--CSSTHHHHHHHHHHHCCC
T ss_pred ---------------CCEEEEecCCccc--cHHHHHHHHHHHHhCCcC
Confidence 6678999999999 999999999999999963
No 9
>3v2d_S 50S ribosomal protein L18; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_M 2hgj_R 2hgq_R 2hgu_R 1vsa_M 2j03_S 2jl6_S 2jl8_S 2v47_S 2v49_S 2wdi_S 2wdj_S 2wdl_S 2wdn_S 2wh2_S 2wh4_S 2wrj_S 2wrl_S 2wro_S 2wrr_S ...
Probab=99.95 E-value=1e-28 Score=207.74 Aligned_cols=91 Identities=32% Similarity=0.276 Sum_probs=84.6
Q ss_pred CCcceEEEEecCCcEEEEEEeeecCCCEEEEEEecCCccccccccCCCcHHHHHHHHHHHHHHHHhhcCccccccccccc
Q psy5756 90 TPKYRLIVRFSNKDITCQVAYSRIEGDHIICSAYSHELPKYGIKVGLTNYAAAYATGLLLARRLLKNLNLDRLYVGCTEV 169 (360)
Q Consensus 90 tpKpRLVVrrSNrhIyAQIId~~~eGD~tLaSAsS~EL~kyG~k~g~tN~aAAYltGlLlAkRALkk~gld~~Y~G~~ev 169 (360)
||+|||+|++||+|||||||++ ++|+|||||||+|++. + ++|++|||+||++||+||+++ |
T Consensus 21 t~rpRL~V~rSnkhiyAQiidd--~~~~tlasAsT~e~~~---k--~~n~~AA~~vG~llA~ra~~~--------G---- 81 (112)
T 3v2d_S 21 TGRLRLSVFRSLKHIYAQIIDD--EKGVTLVSASSLALKL---K--GNKTEVARQVGRALAEKALAL--------G---- 81 (112)
T ss_dssp TCCCEEEEEECSSCEEEEEEET--TTTEEEEEEETTTTTC---C--CCHHHHHHHHHHHHHHHHHTT--------T----
T ss_pred CCCCEEEEEEeCCeEEEEEEec--CCCeEEEEEEecchhc---c--CCCHHHHHHHHHHHHHHHHHC--------C----
Confidence 4689999999999999999985 6999999999999973 2 689999999999999999998 5
Q ss_pred cccceeecccCCCCCceEEEEeecccccccCceeEEeecccccccee
Q psy5756 170 TGEEFSVESVDKGPGAFRCYLDVGLMKTSTGAKVFGAMKGAVDGGLN 216 (360)
Q Consensus 170 ~ge~~~vE~~dg~~~~f~avLDiGL~RtT~G~RVFAalKGAvDgGL~ 216 (360)
+.+++||+|++++ |+||+|+++||+|+||+
T Consensus 82 ---------------I~~vvfDrgg~~y--hGrV~Ala~~are~GL~ 111 (112)
T 3v2d_S 82 ---------------IKQVAFDRGPYKY--HGRVKALAEGAREGGLE 111 (112)
T ss_dssp ---------------CCBCEEECTTSCS--CSSTTHHHHHHHHTTCB
T ss_pred ---------------CCEEEEecCCCcc--cHHHHHHHHHHHHcCCC
Confidence 7789999999999 99999999999999996
No 10
>2zjr_L 50S ribosomal protein L18; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.55.4.1 PDB: 1sm1_M* 2zjp_L* 2zjq_L 1nkw_M 3cf5_L* 3dll_L* 3pio_L* 3pip_L* 1nwy_M* 1nwx_M* 1xbp_M* 1pnu_M 1pny_M 1vor_P 1vou_P 1vow_P 1voy_P 1vp0_P
Probab=99.94 E-value=2.5e-29 Score=212.02 Aligned_cols=91 Identities=26% Similarity=0.269 Sum_probs=82.5
Q ss_pred CCcceEEEEecCCcEEEEEEeeecCCCEEEEEEecCCccccccccCCCcHHHHHHHHHHHHHHHHhhcCccccccccccc
Q psy5756 90 TPKYRLIVRFSNKDITCQVAYSRIEGDHIICSAYSHELPKYGIKVGLTNYAAAYATGLLLARRLLKNLNLDRLYVGCTEV 169 (360)
Q Consensus 90 tpKpRLVVrrSNrhIyAQIId~~~eGD~tLaSAsS~EL~kyG~k~g~tN~aAAYltGlLlAkRALkk~gld~~Y~G~~ev 169 (360)
++||||+|++||+|||||||++ ++|+|||||||+|| .+++|++|||+||++||+||+++ |
T Consensus 24 ~~rpRL~V~rSnkhIyAQiidd--~~~~tl~sAST~el------~~~~n~~AA~~vG~llA~Ral~~--------G---- 83 (114)
T 2zjr_L 24 SGRLRLSVYRSSKHIYAQIIDD--SRGQTLAAASSAAL------KSGNKTDTAAAVGKALAAAAAEK--------G---- 83 (114)
T ss_dssp TCSEEECCCTTSSCCCCCEEET--TTTEECCCCCSCSC------CTTCSSSSHHHHHHHHHHHHHTT--------C----
T ss_pred CCCCEEEEEEeCCeEEEEEEEc--CCCEEEEEEEchHh------cCCCCHHHHHHHHHHHHHHHHHC--------C----
Confidence 6789999999999999999975 69999999999996 26789999999999999999998 5
Q ss_pred cccceeecccCCCCCceEEEEeecccccccCceeEEeeccccccceec
Q psy5756 170 TGEEFSVESVDKGPGAFRCYLDVGLMKTSTGAKVFGAMKGAVDGGLNI 217 (360)
Q Consensus 170 ~ge~~~vE~~dg~~~~f~avLDiGL~RtT~G~RVFAalKGAvDgGL~I 217 (360)
+.+|+||+|+++| |+||+|+++||+|+||++
T Consensus 84 ---------------I~~vvfDrgg~~y--hgrV~Ala~~are~GL~f 114 (114)
T 2zjr_L 84 ---------------IKQVVFDRGSYKY--HGRVKALADAAREGGLDF 114 (114)
T ss_dssp ---------------CCCCEECCCSSCS--CSHHHHHHHHHHHHC---
T ss_pred ---------------CCEEEEecCCccc--cHHHHHHHHHHHHhCCcC
Confidence 7779999999999 999999999999999974
No 11
>3bbo_Q Ribosomal protein L18; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=99.93 E-value=8.2e-28 Score=213.15 Aligned_cols=95 Identities=23% Similarity=0.202 Sum_probs=86.1
Q ss_pred CCcceEEEEecCCcEEEEEEeeecCCCEEEEEEecCCccc---cccccCCCcHHHHHHHHHHHHHHHHhhcCcccccccc
Q psy5756 90 TPKYRLIVRFSNKDITCQVAYSRIEGDHIICSAYSHELPK---YGIKVGLTNYAAAYATGLLLARRLLKNLNLDRLYVGC 166 (360)
Q Consensus 90 tpKpRLVVrrSNrhIyAQIId~~~eGD~tLaSAsS~EL~k---yG~k~g~tN~aAAYltGlLlAkRALkk~gld~~Y~G~ 166 (360)
..+|||+|++||+|||||||++ ++|+|||||||.|.+. .+| +.++|++||++||++||+||+++ |
T Consensus 63 ~~rPRL~V~rSnkhIyAQvIdd--~~g~tLasASTlek~lk~~l~~-g~~~n~~AA~~VG~liAeRA~e~--------G- 130 (161)
T 3bbo_Q 63 PERPRLCVFRSNKHLYVQVIDD--SKMHTLASASTMQKSISEELDY-SSSPTIEVAKKVGEVIASACLEK--------G- 130 (161)
T ss_dssp SSCCCCEEEECSSCEEEEEECC--TTSCEEEEEEHHHHHHHHCCTT-CCSSSHHHHHHHHHHSSSHHHHT--------S-
T ss_pred CCCCEEEEEecCCeEEEEEEEC--CCCEEEEEEeCCcHHHHhhccc-cCCCCHHHHHHHHHHHHHHHHHC--------C-
Confidence 4579999999999999999986 5999999999988542 455 56899999999999999999999 5
Q ss_pred ccccccceeecccCCCCCceEEEEeecccccccCceeEEeecccccccee
Q psy5756 167 TEVTGEEFSVESVDKGPGAFRCYLDVGLMKTSTGAKVFGAMKGAVDGGLN 216 (360)
Q Consensus 167 ~ev~ge~~~vE~~dg~~~~f~avLDiGL~RtT~G~RVFAalKGAvDgGL~ 216 (360)
|.+++||+|++++ ||||+|+++||+|+||+
T Consensus 131 ------------------I~~VvFDRgg~~Y--hGRVkAladaaRe~GL~ 160 (161)
T 3bbo_Q 131 ------------------ITKVAFDRGGYPY--HGRVKALADAAREKGLQ 160 (161)
T ss_dssp ------------------SCCCCCCCSSSCS--SSTTHHHHHHHTTTTCC
T ss_pred ------------------CCEEEEeCCCCcc--hHHHHHHHHHHHHhCCc
Confidence 7789999999999 99999999999999996
No 12
>4gmn_B 60S ribosomal protein L5-like protein; ARM, heat, solenoid, linear motif, nuclear transport, chaper ribosome assembly, RPL11, KAP104; 2.95A {Chaetomium thermophilum}
Probab=99.90 E-value=2.8e-25 Score=162.63 Aligned_cols=42 Identities=69% Similarity=1.121 Sum_probs=41.4
Q ss_pred cceEEEeeccCCcccccccccccccCCchHHHHHHHHHhCCC
Q psy5756 45 MGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLIVQDKN 86 (360)
Q Consensus 45 M~fvKv~KnkaYfkRyqVKfRRRREGKTDY~~R~kLi~qdKn 86 (360)
|+|||++||+|||||||||||||||||||||+|++||.|||+
T Consensus 1 M~FvKvvKnkaYfkRyQvkfRRRREGKTDYyaRkrLv~QdKa 42 (49)
T 4gmn_B 1 MAFHKLVKNSAYYSRFQTKFKRRRQGKTDYYARKRLITQAKG 42 (49)
T ss_pred CCceeeehhHHHHHHHhhHHhhhhcccchHHHHHHHHhhccc
Confidence 999999999999999999999999999999999999999996
No 13
>2vqe_K 30S ribosomal protein S11, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.55.4.1 PDB: 1gix_N* 1hnw_K* 1hnx_K* 1hnz_K* 1hr0_K 1ibk_K* 1ibl_K* 1ibm_K 1j5e_K 1jgo_N* 1jgp_N* 1jgq_N* 1ml5_N* 1n32_K* 1n33_K* 1n34_K 1n36_K 1xmo_K* 1xmq_K* 1xnq_K* ...
Probab=90.52 E-value=0.9 Score=38.79 Aligned_cols=63 Identities=13% Similarity=0.036 Sum_probs=48.0
Q ss_pred CCCcceEEEEecCCcEEEEEEeeecCCCEEEEEEecCCccccccccCCCcHHHHHHHHHHHHHHHHhh
Q psy5756 89 NTPKYRLIVRFSNKDITCQVAYSRIEGDHIICSAYSHELPKYGIKVGLTNYAAAYATGLLLARRLLKN 156 (360)
Q Consensus 89 ntpKpRLVVrrSNrhIyAQIId~~~eGD~tLaSAsS~EL~kyG~k~g~tN~aAAYltGlLlAkRALkk 156 (360)
|-+...+-|+-|-+++++.|.|. .+.+++.+|+--+...|-. ....-||+.++..+|+++.+.
T Consensus 13 ~~~~gi~hI~as~NNTivtiTd~---~G~~~~~~SaG~~gfKg~r--k~tp~AA~~aa~~~~~~~~~~ 75 (129)
T 2vqe_K 13 QVASGRAYIHASYNNTIVTITDP---DGNPITWSSGGVIGYKGSR--KGTPYAAQLAALDAAKKAMAY 75 (129)
T ss_dssp CCSEEEEEEEECSSCEEEEEECT---TSCEEEECCTTTTTCCSGG--GGSHHHHHHHHHHHHHHHHTT
T ss_pred cccceEEEEEecCCCEEEEEEcC---CCCEEEEEeccceeEcCCC--cCCHHHHHHHHHHHHHHHHHh
Confidence 35568899999999999999995 4567777777666433322 356778899999999999875
No 14
>3j20_M 30S ribosomal protein S11P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=90.48 E-value=1.1 Score=38.70 Aligned_cols=107 Identities=18% Similarity=0.095 Sum_probs=69.9
Q ss_pred cceEEEEecCCcEEEEEEeeecCCCEEEEEEecCCccccccccCCCcHHHHHHHHHHHHHHHHhhcCccccccccccccc
Q psy5756 92 KYRLIVRFSNKDITCQVAYSRIEGDHIICSAYSHELPKYGIKVGLTNYAAAYATGLLLARRLLKNLNLDRLYVGCTEVTG 171 (360)
Q Consensus 92 KpRLVVrrSNrhIyAQIId~~~eGD~tLaSAsS~EL~kyG~k~g~tN~aAAYltGlLlAkRALkk~gld~~Y~G~~ev~g 171 (360)
..-+-|+-|-+++++.|.|. .|..||+.+|+-..-..|-+ .+..-||++++.-+|++|++. |+-.
T Consensus 14 ~gi~hI~asfNNTivtiTD~--~G~~~i~~~S~G~~gfkg~~--ksTp~AA~~aa~~~~~~a~e~-Gi~~---------- 78 (137)
T 3j20_M 14 WGIAHIYSSFNNTIIHITDI--TGAETISRWSGGMVVKADRD--EPSPYAAMLAARRAAEEALEK-GIVG---------- 78 (137)
T ss_dssp EEEEEEEECSSCEEEEEEES--SSCSEEEEEEGGGTCSCTTT--SSSHHHHHHHHHHHHHHHHHH-TEEE----------
T ss_pred ceEEEEEcCCCCEEEEEEcC--CCCEEEEEEccceeeecCCc--cCCHHHHHHHHHHHHHHHHHc-CCeE----------
Confidence 45566888999999999995 47779998887666443321 245568999999999999886 2211
Q ss_pred cceeecccCCCCCceEEEEe-eccccc-ccCceeEEeeccccccceec---------ccCCcccCCC
Q psy5756 172 EEFSVESVDKGPGAFRCYLD-VGLMKT-STGAKVFGAMKGAVDGGLNI---------PHSVKRFPGY 227 (360)
Q Consensus 172 e~~~vE~~dg~~~~f~avLD-iGL~Rt-T~G~RVFAalKGAvDgGL~I---------PHsekrfPg~ 227 (360)
..+.|- .|..++ |.|.---+|+++...+||.| ||+--|-||-
T Consensus 79 --------------v~V~vkG~gg~~~~~pG~GresairaL~~~Gl~I~~I~DvTpiPhnGcRp~g~ 131 (137)
T 3j20_M 79 --------------VHIRVRAPGGSKSKTPGPGAQAAIRALARAGLKIGRVEDVTPIPHDGTRPKGG 131 (137)
T ss_dssp --------------EEEEEECCCSSSCCSCCTHHHHHHHHHHHHTCEEEEEEECCCCCSSCCCCSCC
T ss_pred --------------EEEEEECCCCCCCcCCCCcHHHHHHHHHhCCCEEEEEEEcCCCCCCCCCCCCC
Confidence 112221 122322 12332345677777788875 9999999874
No 15
>3bbn_K Ribosomal protein S11; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=87.32 E-value=1.1 Score=38.92 Aligned_cols=63 Identities=17% Similarity=0.057 Sum_probs=45.8
Q ss_pred CCCcceEEEEecCCcEEEEEEeeecCCCEEEEEEecCCccccccccCCCcHHHHHHHHHHHHHHHHhh
Q psy5756 89 NTPKYRLIVRFSNKDITCQVAYSRIEGDHIICSAYSHELPKYGIKVGLTNYAAAYATGLLLARRLLKN 156 (360)
Q Consensus 89 ntpKpRLVVrrSNrhIyAQIId~~~eGD~tLaSAsS~EL~kyG~k~g~tN~aAAYltGlLlAkRALkk 156 (360)
|.+..-+-|+-|-+++++.|.|. .+.+++.+|+--+...|-. ....-||+.++..+|+++++.
T Consensus 26 ~~~~gi~hI~as~NNTivtiTD~---~G~~i~~~SaG~~GfKg~r--ksTp~AA~~aa~~~~~~a~e~ 88 (140)
T 3bbn_K 26 KIPKGVIHVQASFNNTIVTVTDV---RGRVVSWASAGTCGFRGTK--RGTPFAAQTAAGNAIRTVVEQ 88 (140)
T ss_dssp CCCCCEEEEEECSSCEEEEEECS---SSCEEEEEETTTSSCCTTS--CSSHHHHHHHHTSGGGTSTTT
T ss_pred cceeeEEEEEecCCCEEEEEEcC---CCCEEEEEeccceeEcccc--cCCHHHHHHHHHHHHHHHHHh
Confidence 45668899999999999999995 4567777787665433322 356677888878888777654
No 16
>3u5c_O RP59A, 40S ribosomal protein S14-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_K 3o30_H 3o2z_H 3u5g_O 1s1h_K 3jyv_K*
Probab=83.85 E-value=0.83 Score=39.53 Aligned_cols=103 Identities=19% Similarity=0.185 Sum_probs=63.9
Q ss_pred ceEEEEecCCcEEEEEEeeecCCCEEEEEEecCCccccccccCC--CcHHHHHHHHHHHHHHHHhhcCcccccccccccc
Q psy5756 93 YRLIVRFSNKDITCQVAYSRIEGDHIICSAYSHELPKYGIKVGL--TNYAAAYATGLLLARRLLKNLNLDRLYVGCTEVT 170 (360)
Q Consensus 93 pRLVVrrSNrhIyAQIId~~~eGD~tLaSAsS~EL~kyG~k~g~--tN~aAAYltGlLlAkRALkk~gld~~Y~G~~ev~ 170 (360)
.-+-|+-|-+++++.|.|. .|..+++ .||--+ |.|++. +.--||.+++..+|++|++. |+-
T Consensus 15 gi~hI~asfNNTivtvTD~--~G~~~~~-~ssG~~---gfKg~r~ksTpyAAq~aa~~~a~~a~e~-Gi~---------- 77 (137)
T 3u5c_O 15 GVARIYASFNDTFVHVTDL--SGKETIA-RVTGGM---KVKADRDESSPYAAMLAAQDVAAKCKEV-GIT---------- 77 (137)
T ss_dssp EECCEEEETTEEEECCEET--TSSSCCC-CCBTTT---TSCCSTTTTCHHHHHHHHHHHHHHHHHH-TCC----------
T ss_pred EEEEEEccCCCEEEEEEcC--CCCEEEE-EeCCCc---EEeCCcccCCHHHHHHHHHHHHHHHHHc-CCe----------
Confidence 4455888999999999985 4665554 444333 334433 45568899999999999886 221
Q ss_pred ccceeecccCCCCCceEEEE-eeccccc-ccCceeEEeeccccccceec---------ccCCcccCC
Q psy5756 171 GEEFSVESVDKGPGAFRCYL-DVGLMKT-STGAKVFGAMKGAVDGGLNI---------PHSVKRFPG 226 (360)
Q Consensus 171 ge~~~vE~~dg~~~~f~avL-DiGL~Rt-T~G~RVFAalKGAvDgGL~I---------PHsekrfPg 226 (360)
...+.| -.|..++ +.|.==-+|+++...+||.| ||+--|-|+
T Consensus 78 --------------~v~V~vra~gg~~~kgpG~Gr~sairaL~~~Gl~I~~I~DvTpiPhnGcRp~K 130 (137)
T 3u5c_O 78 --------------AVHVKIRATGGTRTKTPGPGGQAALRALARSGLRIGRIEDVTPVPSDSTRKKG 130 (137)
T ss_dssp --------------EEECEEECSCTTSCCSCCGGGHHHHHHHHTTTCEECCCEECCCCCSSCSCCTT
T ss_pred --------------EEEEEEeccCCCcccCCCcchHHHHHHHHhCCCEEEEEEEcCCCCCCCCCCCC
Confidence 111222 1233333 22222245777777788875 998888876
No 17
>3r8n_K 30S ribosomal protein S11; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_K 3fih_K* 3iy8_K 3j18_K* 2wwl_K 3oar_K 3oaq_K 3ofb_K 3ofa_K 3ofp_K 3ofx_K 3ofy_K 3ofo_K 3r8o_K 4a2i_K 4gd1_K 4gd2_K 3i1m_K 1vs7_K* 3e1a_C ...
Probab=81.87 E-value=2.9 Score=35.07 Aligned_cols=62 Identities=11% Similarity=-0.034 Sum_probs=44.7
Q ss_pred CCcceEEEEecCCcEEEEEEeeecCCCEEEEEEecCCccccccccCCCcHHHHHHHHHHHHHHHHhh
Q psy5756 90 TPKYRLIVRFSNKDITCQVAYSRIEGDHIICSAYSHELPKYGIKVGLTNYAAAYATGLLLARRLLKN 156 (360)
Q Consensus 90 tpKpRLVVrrSNrhIyAQIId~~~eGD~tLaSAsS~EL~kyG~k~g~tN~aAAYltGlLlAkRALkk 156 (360)
.+.--+-|+-|-+++++.|.|. .|. +++.+|+-.+...|-. ....-||++++.-+|+++++.
T Consensus 4 ~~~gi~hI~as~NNTivtiTD~--~G~-~i~~~S~G~~gfKg~r--k~tp~AA~~aa~~~~~~~~~~ 65 (117)
T 3r8n_K 4 VSDGVAHIHASFNNTIVTITDR--QGN-ALGWATAGGSGFRGSR--KSTPFAAQVAAERCADAVKEY 65 (117)
T ss_dssp CCEEEEEEEECSSCEEEEEECT--TSC-CSEEEETGGGSCCGGG--GSSHHHHHHHHHHHHHHHTTS
T ss_pred cceeEEEEEcccCCEEEEEEcC--CCC-EEEEEcCCccccCCCc--cCCHHHHHHHHHHHHHHHHHh
Confidence 3444566888999999999995 354 8888887666433322 245668899999999998775
No 18
>2xzm_K RPS14E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_K 3j0o_K 3j0l_K 2zkq_k 3iz6_K 3jyv_K*
Probab=80.09 E-value=2.5 Score=37.15 Aligned_cols=106 Identities=17% Similarity=0.132 Sum_probs=68.2
Q ss_pred cceEEEEecCCcEEEEEEeeecCCCEEEEEEecCCccccccccCCCcHHHHHHHHHHHHHHHHhhcCccccccccccccc
Q psy5756 92 KYRLIVRFSNKDITCQVAYSRIEGDHIICSAYSHELPKYGIKVGLTNYAAAYATGLLLARRLLKNLNLDRLYVGCTEVTG 171 (360)
Q Consensus 92 KpRLVVrrSNrhIyAQIId~~~eGD~tLaSAsS~EL~kyG~k~g~tN~aAAYltGlLlAkRALkk~gld~~Y~G~~ev~g 171 (360)
..-+-|+-|-+++++.|.|. .|+.|+++++.-..-+.+- .....-||.+++.-+|++|++. |+.
T Consensus 28 ~gi~hI~asfNNTiVtiTD~--~G~~~~~~ssgg~~~k~~r--~ksTpyAAq~aa~~~a~~a~e~-Gi~----------- 91 (151)
T 2xzm_K 28 FGVCHIMATWNDTFIHVTDL--SGRETLVRVTGGMKVKADR--EESSPYAAMQAAIDVVNRCKEL-KIN----------- 91 (151)
T ss_dssp EEEEEEEBCSSCBCCEEECT--TCCSEEEECCHHHHCSSGG--GGSCHHHHHHHHHHHHHHHHHH-TCC-----------
T ss_pred eeEEEEEccCCCEEEEEECC--CCCEEEEEecCcceEeCCC--CcCCHHHHHHHHHHHHHHHHHc-CCe-----------
Confidence 36688888999999999995 5887887765543322221 1245678899999999999876 221
Q ss_pred cceeecccCCCCCceEEEE-eeccccc-ccCceeEEeeccccccceec---------ccCCcccCC
Q psy5756 172 EEFSVESVDKGPGAFRCYL-DVGLMKT-STGAKVFGAMKGAVDGGLNI---------PHSVKRFPG 226 (360)
Q Consensus 172 e~~~vE~~dg~~~~f~avL-DiGL~Rt-T~G~RVFAalKGAvDgGL~I---------PHsekrfPg 226 (360)
...+.| ..|..++ +.|.---+|+++...+||.| ||+--|-|.
T Consensus 92 -------------~v~V~vkG~gg~~~kgpG~GresairaL~~~GlkI~~I~DvTpiPhNGcRp~K 144 (151)
T 2xzm_K 92 -------------ALHIKLRAKGGVETKQPGPGAQSALRALARSGMKIGRIEDVTPIPTDSTRREG 144 (151)
T ss_dssp -------------EEEEEEECCCTTSCCSCCSHHHHHHHHHHHTSCEEEEEEECCCCCSSCCCCSS
T ss_pred -------------EEEEEEEcCCCCCccCCCccHHHHHHHHHHCCCEEEEEEEeCCCCCCCCCCCC
Confidence 111222 2333332 22333356778777889875 898888776
No 19
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=26.26 E-value=22 Score=23.07 Aligned_cols=18 Identities=50% Similarity=0.698 Sum_probs=14.8
Q ss_pred chhccchhhHHHHhhhcc
Q psy5756 308 CLHDISCRLYKLRKKIKN 325 (360)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~ 325 (360)
-|.|+.-||-|||||+..
T Consensus 9 eledlqerlrklrkklrs 26 (27)
T 3twe_A 9 ELEDLQERLRKLRKKLRS 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 367888999999999863
Done!