RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5756
(360 letters)
>d1vqon1 c.55.4.1 (N:1-186) Ribosomal protein L18 (L18p) {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 186
Score = 180 bits (457), Expect = 3e-56
Identities = 65/218 (29%), Positives = 90/218 (41%), Gaps = 53/218 (24%)
Query: 58 KRYQVKFKRRREGKTDYYARKRLIVQDKNKYNTPKYRLIVRFSNKDITCQVAYSRIEGDH 117
RY+V +RRRE +TDY+ R RL+ + K RL+ R SNK + Q+ GD
Sbjct: 4 PRYKVPMRRRREARTDYHQRLRLL-------KSGKPRLVARKSNKHVRAQLVTLGPNGDD 56
Query: 118 IICSAYSHELPKYGIKVGLTNYAAAYATGLLLARRLLKNLNLDRLYVGCTEVTGEEFSVE 177
+ SA+S +L +YG + N +AY TGLL R +
Sbjct: 57 TLASAHSSDLAEYGWEAPTGNMPSAYLTGLLAGLRAQE---------------------- 94
Query: 178 SVDKGPGAFRCYLDVGLMKTSTGAKVFGAMKGAVDGGLNIPHSVKRFPGYDNESKDFNAE 237
G LD+GL + G+KVF +GA+D GL+IPH+ +
Sbjct: 95 -----AGVEEAVLDIGLNSPTPGSKVFAIQEGAIDAGLDIPHNDDVLADWQ--------- 140
Query: 238 IHRKHIFGLHVAEYMRQLSEE------DDEAFKRQFSE 269
G H+AEY QL E D F E
Sbjct: 141 ----RTRGAHIAEYDEQLEEPLYSGDFDAADLPEHFDE 174
>d1ovya_ c.55.4.1 (A:) Ribosomal protein L18 (L18p) {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 97
Score = 38.3 bits (89), Expect = 1e-04
Identities = 26/125 (20%), Positives = 36/125 (28%), Gaps = 33/125 (26%)
Query: 92 KYRLIVRFSNKDITCQVAYSRIEGDHIICSAYSHELPKYGIKVGLTNYAAAYATGLLLAR 151
+ RL V SNK I Q+ I SA + + N AA G L+A+
Sbjct: 5 RPRLSVFRSNKHIYAQI--IDDTKSATIVSASTLDKEF--GLDSTNNIEAAKKVGELVAK 60
Query: 152 RLLKNLNLDRLYVGCTEVTGEEFSVESVDKGPGAFRCYLDVGLMKTSTGAKVFGAMKGAV 211
R L+ G + D G +V A
Sbjct: 61 RALEK---------------------------GIKQVVFDRGGYL--YHGRVKALADAAR 91
Query: 212 DGGLN 216
+ GL
Sbjct: 92 EAGLE 96
>d2gycm1 c.55.4.1 (M:3-115) Ribosomal protein L18 (L18p)
{Escherichia coli [TaxId: 562]}
Length = 113
Score = 38.8 bits (90), Expect = 1e-04
Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 3/85 (3%)
Query: 71 KTDYYARKRLIVQDKNKYNTPKYRLIVRFSNKDITCQVAYSRIEGDHIICSAYSHELPKY 130
K R+ + K + RL+V + + I QV G ++ +A + E
Sbjct: 1 KKSARIRRATRARRKLQ-ELGATRLVVHRTPRHIYAQV--IAPNGSEVLVAASTVEKAIA 57
Query: 131 GIKVGLTNYAAAYATGLLLARRLLK 155
N AA A G +A R L+
Sbjct: 58 EQLKYTGNKDAAAAVGKAVAERALE 82
>d2j01s1 c.55.4.1 (S:23-108) Ribosomal protein L18 (L18p) {Thermus
thermophilus [TaxId: 274]}
Length = 86
Score = 36.2 bits (84), Expect = 6e-04
Identities = 19/64 (29%), Positives = 23/64 (35%), Gaps = 7/64 (10%)
Query: 92 KYRLIVRFSNKDITCQVAYSRIEGDHIICSAYSHELPKYGIKVGLTNYAAAYATGLLLAR 151
+ RL V S K I Q+ E + SA S L G K A G LA
Sbjct: 1 RLRLSVFRSLKHIYAQI--IDDEKGVTLVSASSLALKLKGNKTE-----VARQVGRALAE 53
Query: 152 RLLK 155
+ L
Sbjct: 54 KALA 57
>d2zjrl1 c.55.4.1 (L:8-111) Ribosomal protein L18 (L18p)
{Deinococcus radiodurans [TaxId: 1299]}
Length = 104
Score = 28.3 bits (63), Expect = 0.50
Identities = 19/82 (23%), Positives = 29/82 (35%), Gaps = 11/82 (13%)
Query: 77 RKRLIVQDKNKYNTP---KYRLIVRFSNKDITCQVAYSRIEGDHIICSAYSHELPKYGIK 133
R++L + K + T + RL V S+K I Q+ + +A S L
Sbjct: 1 RRKLRTRRKVRTTTAASGRLRLSVYRSSKHIYAQI--IDDSRGQTLAAASSAALKSGNKT 58
Query: 134 VGLTNYAAAYATGLLLARRLLK 155
A A G LA +
Sbjct: 59 ------DTAAAVGKALAAAAAE 74
>d1sc6a2 c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate
dehydrogenase {Escherichia coli [TaxId: 562]}
Length = 132
Score = 28.1 bits (62), Expect = 0.81
Identities = 21/99 (21%), Positives = 32/99 (32%), Gaps = 10/99 (10%)
Query: 67 RREGKTDYYARKRLIVQDKNKYNTPKYRLIVRFSNKDITCQVAYSRIEGDHIICSAYSH- 125
R G T+ K + ++ K + I S +T V + + I A
Sbjct: 22 RAAGYTNIEFHKGALDDEQLKESIRDAHFIGLRSRTHLTEDVINAAEKLVAIGAFAIGTN 81
Query: 126 -----ELPKYGIKVGLT----NYAAAYATGLLLARRLLK 155
K GI V A GL +A +L+K
Sbjct: 82 QVDLDAAAKRGIPVFNAPFSSTQEAQENIGLEVAGKLIK 120
>d1h80a_ b.80.1.8 (A:) iota-carrageenase {Alteromonas sp., atcc
43554 [TaxId: 232]}
Length = 464
Score = 26.5 bits (58), Expect = 5.0
Identities = 21/153 (13%), Positives = 43/153 (28%), Gaps = 36/153 (23%)
Query: 43 LEMGFVKVVKNKQYFKRYQVKFKRRREGKTDYYARKRLIVQDKNKYNTPKYRLIVRFSNK 102
+ GFV++ + + +K+ E K R Q R R + K
Sbjct: 277 SDSGFVELF-SPTDEVHTRQSWKQAVESKLG-----RGCAQTPYARGNGGTRWAARVTQK 330
Query: 103 DITCQVAYSRIEGDHIICSAYSHELPKYGIKVG------LTNYAAAYATGLLLARRLLKN 156
D + +YGI+ G + + A + L + L
Sbjct: 331 D-----------------ACLDKAKLEYGIEPGSFGTVKVFDVTARFGYNADLKQDQLD- 372
Query: 157 LNLDRLYVGCTEVTGEEFSVESVDKGPGAFRCY 189
Y + + + + ++ + Y
Sbjct: 373 ------YFSTSNPMCKRVCLPTKEQWSKQGQIY 399
>d3clsd2 c.31.1.2 (D:196-318) C-terminal domain of the electron
transfer flavoprotein alpha subunit {Methylophilus
methylotrophus [TaxId: 17]}
Length = 123
Score = 25.5 bits (56), Expect = 6.5
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 6/42 (14%)
Query: 273 GWGTLSEQLGMTKSSFKCEKLWIVYFCVGIG---ENLACLHD 311
GW S Q+G + KL Y +GI +++A +
Sbjct: 47 GWLPKSRQVGQSGKVVGSCKL---YVAMGISGSIQHMAGMKH 85
>d1xrsa_ c.1.19.4 (A:) D-lysine 5,6-aminomutase alpha subunit, KamD
{Clostridium sticklandii [TaxId: 1511]}
Length = 516
Score = 25.9 bits (57), Expect = 9.7
Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 190 LDVGLMKTSTGAKVFGAMKGAVDGGLNIPHSVKRFPGYDN 229
+GL + +FG +K DGG + V + Y N
Sbjct: 469 EQLGLFD-TLEKGIFGGVKRPKDGGKGLNGVVSKDENYYN 507
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.138 0.419
Gapped
Lambda K H
0.267 0.0659 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,366,490
Number of extensions: 65910
Number of successful extensions: 147
Number of sequences better than 10.0: 1
Number of HSP's gapped: 144
Number of HSP's successfully gapped: 12
Length of query: 360
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 274
Effective length of database: 1,226,816
Effective search space: 336147584
Effective search space used: 336147584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.3 bits)