BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5757
(139 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1I1N|A Chain A, Human Protein L-Isoaspartate O-Methyltransferase With S-
Adenosyl Homocysteine
pdb|1KR5|A Chain A, Crystal Structure Of Human L-Isoaspartyl Methyltransferase
Length = 226
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 47/71 (66%)
Query: 20 LSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNA 79
L ++ L+E +K L++GSGSG LT + ++ TG+VIGI+H+ +LV+ S+ N+ +
Sbjct: 68 LELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDP 127
Query: 80 RLLTDGHIKFV 90
LL+ G ++ V
Sbjct: 128 TLLSSGRVQLV 138
>pdb|1R18|A Chain A, Drosophila Protein Isoaspartyl Methyltransferase With
S-Adenosyl-L- Homocysteine
Length = 227
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Query: 20 LSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTG-----QVIGIEHVPQLVNSSIQNI 74
L ++ HL +++L++GSGSGYLT + + G +++GIEH +LV S N+
Sbjct: 75 LEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANL 134
Query: 75 LHSNARLLTDGHIKFV 90
+ +L G + V
Sbjct: 135 NTDDRSMLDSGQLLIV 150
>pdb|2PBF|A Chain A, Crystal Structure Of A Putative Protein-L-Isoaspartate O-
Methyltransferase Beta-Aspartate Methyltransferase
(Pcmt) From Plasmodium Falciparum In Complex With
S-Adenosyl-L-Homocysteine
pdb|2PBF|B Chain B, Crystal Structure Of A Putative Protein-L-Isoaspartate O-
Methyltransferase Beta-Aspartate Methyltransferase
(Pcmt) From Plasmodium Falciparum In Complex With
S-Adenosyl-L-Homocysteine
Length = 227
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 27 LNENSKVLEIGSGSGYLTNMISELMN----STGQVIGIEHVPQLVNSSIQNILHSNARLL 82
L S+ +++GSGSGYLT ++ MN VIG+E V LVN S++NI LL
Sbjct: 78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELL 137
Query: 83 TDGHIKFV 90
+ K +
Sbjct: 138 KIDNFKII 145
>pdb|2YXE|A Chain A, Crystal Structure Of L-Isoaspartyl Protein Carboxyl
Methyltranferase
pdb|2YXE|B Chain B, Crystal Structure Of L-Isoaspartyl Protein Carboxyl
Methyltranferase
Length = 215
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSS---IQNILHSNARLLT 83
L KVLEIG+G GY + +E++ G V+ IE +P+L + ++ + + N ++
Sbjct: 75 LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIV 134
Query: 84 -DGHIKFVALGMIKRIET 100
DG + + L RI T
Sbjct: 135 GDGTLGYEPLAPYDRIYT 152
>pdb|1JG4|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O-
Methyltransferase With S-Adenosylmethionine
pdb|1JG3|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl)
O-Methyltransferase With Adenosine & Vyp(Isp)ha
Substrate
pdb|1JG3|B Chain B, Crystal Structure Of L-Isoaspartyl (D-Aspartyl)
O-Methyltransferase With Adenosine & Vyp(Isp)ha
Substrate
pdb|1JG2|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O-
Methyltransferase With Adenosine
pdb|1JG1|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O-
Methyltransferase With S-Adenosyl-L-Homocysteine
Length = 235
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 10/71 (14%)
Query: 23 IQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNAR-- 80
++P +N +LE+G+GSG+ +ISE++ + V IE +P+LV + +N+ + +
Sbjct: 89 LKPGMN----ILEVGTGSGWNAALISEIVKT--DVYTIERIPELVEFAKRNLERAGVKNV 142
Query: 81 --LLTDGHIKF 89
+L DG F
Sbjct: 143 HVILGDGSKGF 153
>pdb|1DL5|A Chain A, Protein-L-Isoaspartate O-Methyltransferase
pdb|1DL5|B Chain B, Protein-L-Isoaspartate O-Methyltransferase
Length = 317
Score = 34.7 bits (78), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 30/48 (62%)
Query: 27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNI 74
L++ +VLEIG G+GY ++S ++ G V+ +E+ ++ + +N+
Sbjct: 73 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNV 120
>pdb|2YVL|A Chain A, Crystal Structure Of Trna (m1a58) Methyltransferase Trmi
From Aquifex Aeolicus
pdb|2YVL|B Chain B, Crystal Structure Of Trna (m1a58) Methyltransferase Trmi
From Aquifex Aeolicus
pdb|2YVL|C Chain C, Crystal Structure Of Trna (m1a58) Methyltransferase Trmi
From Aquifex Aeolicus
pdb|2YVL|D Chain D, Crystal Structure Of Trna (m1a58) Methyltransferase Trmi
From Aquifex Aeolicus
Length = 248
Score = 34.7 bits (78), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 26 HLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSN 78
+LN+ +VLE G+GSG L ++SE+ G+V E V + ++ +N+ N
Sbjct: 88 NLNKEKRVLEFGTGSGALLAVLSEV---AGEVWTFEAVEEFYKTAQKNLKKFN 137
>pdb|3BKX|A Chain A, Crystal Structure Of
Cyclopropane-fatty-acyl-phospholipid Synthase- Like
Protein (yp_807781.1) From Lactobacillus Casei Atcc 334
At 1.85 A Resolution
pdb|3BKX|B Chain B, Crystal Structure Of
Cyclopropane-fatty-acyl-phospholipid Synthase- Like
Protein (yp_807781.1) From Lactobacillus Casei Atcc 334
At 1.85 A Resolution
Length = 275
Score = 32.7 bits (73), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 22/30 (73%)
Query: 32 KVLEIGSGSGYLTNMISELMNSTGQVIGIE 61
K+LEIG G G L+ ++++ + S+G V GI+
Sbjct: 46 KILEIGCGQGDLSAVLADQVGSSGHVTGID 75
>pdb|3DH0|A Chain A, Crystal Structure Of A Sam Dependent Methyltransferase
From Aquifex Aeolicus
pdb|3DH0|B Chain B, Crystal Structure Of A Sam Dependent Methyltransferase
From Aquifex Aeolicus
Length = 219
Score = 32.7 bits (73), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 29/48 (60%)
Query: 27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNI 74
L E VL++G+G+G+ +S+++ G+V I+ ++VN + + +
Sbjct: 35 LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKV 82
>pdb|3LBF|A Chain A, Crystal Structure Of Protein L-Isoaspartyl
Methyltransferase From Escherichia Coli
pdb|3LBF|B Chain B, Crystal Structure Of Protein L-Isoaspartyl
Methyltransferase From Escherichia Coli
pdb|3LBF|C Chain C, Crystal Structure Of Protein L-Isoaspartyl
Methyltransferase From Escherichia Coli
pdb|3LBF|D Chain D, Crystal Structure Of Protein L-Isoaspartyl
Methyltransferase From Escherichia Coli
Length = 210
Score = 32.7 bits (73), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 26 HLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNI-LHSNARLLTD 84
L S+VLEIG+GSGY T +++ L+ V I+ + ++N+ LH+ + D
Sbjct: 74 ELTPQSRVLEIGTGSGYQTAILAHLVQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGD 133
Query: 85 G 85
G
Sbjct: 134 G 134
>pdb|3CJT|A Chain A, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|C Chain C, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|E Chain E, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|G Chain G, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|I Chain I, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|K Chain K, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|M Chain M, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|O Chain O, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
Length = 254
Score = 31.6 bits (70), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 20 LSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNA 79
L + HL KVL++G+GSG L +L G+ +G++ P ++ + N +
Sbjct: 111 LKALARHLRPGDKVLDLGTGSGVLAIAAEKL---GGKALGVDIDPMVLPQAEANAKRNGV 167
Query: 80 R 80
R
Sbjct: 168 R 168
>pdb|1UFK|A Chain A, Crystal Structure Of Tt0836
pdb|2NXE|A Chain A, T. Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Complex With S-Adenosyl-L-Methionine
pdb|2NXE|B Chain B, T. Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Complex With S-Adenosyl-L-Methionine
pdb|2NXJ|A Chain A, T.Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Space Group P 21 21 2
pdb|2NXJ|B Chain B, T.Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Space Group P 21 21 2
pdb|2NXN|A Chain A, T. Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Complex With Ribosomal Protein L11
pdb|2NXC|A Chain A, Apo-Form Of T. Thermophilus Ribosomal Protein L11
Methyltransferase (Prma)
pdb|3CJQ|A Chain A, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Dimethylated Ribosomal Protein L11 In Space Group
P212121
pdb|3CJQ|D Chain D, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Dimethylated Ribosomal Protein L11 In Space Group
P212121
pdb|3CJQ|G Chain G, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Dimethylated Ribosomal Protein L11 In Space Group
P212121
pdb|3CJR|A Chain A, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Ribosomal Protein L11 (k39a) And Inhibitor
Sinefungin.
pdb|3EGV|A Chain A, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Trimethylated Ribosomal Protein L11
pdb|2ZBP|A Chain A, Crystal Structure Of Ribosomal Protein L11
Methyltransferase From Thermus Thermophilus In Complex
With S-Adenosyl-L-Methionine
pdb|2ZBQ|A Chain A, Crystal Structure Of Ribosomal Protein L11
Methyltransferase From Thermus Thermophilus In Complex
With S-Adenosyl-L-Homocysteine
pdb|2ZBR|A Chain A, Crystal Structure Of Ribosomal Protein L11
Methyltransferase From Thermus Thermophilus In Complex
With S-adenosyl-ornithine
Length = 254
Score = 31.6 bits (70), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 20 LSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNA 79
L + HL KVL++G+GSG L +L G+ +G++ P ++ + N +
Sbjct: 111 LKALARHLRPGDKVLDLGTGSGVLAIAAEKL---GGKALGVDIDPMVLPQAEANAKRNGV 167
Query: 80 R 80
R
Sbjct: 168 R 168
>pdb|3F4K|A Chain A, Crystal Structure Of A Probable Methyltransferase From
Bacteroides Thetaiotaomicron. Northeast Structural
Genomics Target Btr309
Length = 257
Score = 31.6 bits (70), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 26 HLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNA 79
L +++K+ +IG G+G T +++ + GQ+ GI+ P + +N + +N
Sbjct: 43 ELTDDAKIADIGCGTGGQTLFLADYVK--GQITGIDLFPDFIEIFNENAVKANC 94
>pdb|3SVZ|A Chain A, Crystal Structure Of Apo Bt_2972, A Methyltransferase From
Bacteroides Thetaiotaomicron
pdb|3SVZ|B Chain B, Crystal Structure Of Apo Bt_2972, A Methyltransferase From
Bacteroides Thetaiotaomicron
pdb|3SXJ|A Chain A, Crystal Structure Of Complex Of Bt_2972 And Adomet, A
Methyltransferase From Bacteroides Thetaiotaomicron
pdb|3SXJ|B Chain B, Crystal Structure Of Complex Of Bt_2972 And Adomet, A
Methyltransferase From Bacteroides Thetaiotaomicron
pdb|3T0I|A Chain A, Crystal Structure Of Complex Of Bt_2972 And Adohcy, A
Methyltransferase From Bacteroides Thetaiotaomicron
pdb|3T0I|B Chain B, Crystal Structure Of Complex Of Bt_2972 And Adohcy, A
Methyltransferase From Bacteroides Thetaiotaomicron
Length = 263
Score = 31.6 bits (70), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 26 HLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNA 79
L +++K+ +IG G+G T +++ + GQ+ GI+ P + +N + +N
Sbjct: 49 ELTDDAKIADIGCGTGGQTLFLADYVK--GQITGIDLFPDFIEIFNENAVKANC 100
>pdb|1VBF|A Chain A, Crystal Structure Of Protein L-Isoaspartate
O-Methyltransferase Homologue From Sulfolobus Tokodaii
pdb|1VBF|B Chain B, Crystal Structure Of Protein L-Isoaspartate
O-Methyltransferase Homologue From Sulfolobus Tokodaii
pdb|1VBF|C Chain C, Crystal Structure Of Protein L-Isoaspartate
O-Methyltransferase Homologue From Sulfolobus Tokodaii
pdb|1VBF|D Chain D, Crystal Structure Of Protein L-Isoaspartate
O-Methyltransferase Homologue From Sulfolobus Tokodaii
Length = 231
Score = 31.6 bits (70), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 26/35 (74%), Gaps = 3/35 (8%)
Query: 27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIE 61
L++ KVLEIG+G GY T +I+E+++ +V+ +E
Sbjct: 68 LHKGQKVLEIGTGIGYYTALIAEIVD---KVVSVE 99
>pdb|2B25|A Chain A, Human Putative Trna(1-Methyladenosine)methyltransferase
pdb|2B25|B Chain B, Human Putative Trna(1-Methyladenosine)methyltransferase
Length = 336
Score = 31.6 bits (70), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIE 61
+N VLE GSGSG ++ +S+ + S G+VI E
Sbjct: 103 INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFE 137
>pdb|1YUB|A Chain A, Solution Structure Of An Rrna Methyltransferase (Ermam)
That Confers Macrolide-Lincosamide-Streptogramin
Antibiotic Resistance, Nmr, Minimized Average Structure
Length = 245
Score = 30.4 bits (67), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 22 IIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSS 70
I Q +L E V EIG+G G+LT ++++ + QV IE L N S
Sbjct: 22 IKQLNLKETDTVYEIGTGKGHLTTKLAKI---SKQVTSIELDSHLFNLS 67
>pdb|1I9G|A Chain A, Crystal Structure Of An Adomet Dependent Methyltransferase
Length = 280
Score = 30.4 bits (67), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 15/93 (16%)
Query: 30 NSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH------SNARL-- 81
++VLE G+GSG LT + + GQVI E + +N+ N RL
Sbjct: 100 GARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVV 159
Query: 82 -------LTDGHIKFVALGMIKRIETVELMMKF 107
L DG + L M+ E ++ + +
Sbjct: 160 SDLADSELPDGSVDRAVLDMLAPWEVLDAVSRL 192
>pdb|3ID5|B Chain B, Crystal Structure Of Sulfolobus Solfataricus CD RNP
ASSEMBLED WITH Nop5, Fibrillarin, L7ae And A Split Half
CD RNA
pdb|3ID5|F Chain F, Crystal Structure Of Sulfolobus Solfataricus CD RNP
ASSEMBLED WITH Nop5, Fibrillarin, L7ae And A Split Half
CD RNA
pdb|3ID6|C Chain C, Crystal Structure Of Sulfolobus Solfataricus Nop5 (1-262)
And Fibrillarin Complex
pdb|3PLA|E Chain E, Crystal Structure Of A Catalytically Active
Substrate-Bound Box CD Rnp From Sulfolobus Solfataricus
pdb|3PLA|F Chain F, Crystal Structure Of A Catalytically Active
Substrate-Bound Box CD Rnp From Sulfolobus Solfataricus
pdb|3PLA|M Chain M, Crystal Structure Of A Catalytically Active
Substrate-Bound Box CD Rnp From Sulfolobus Solfataricus
Length = 232
Score = 30.4 bits (67), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 26/41 (63%)
Query: 27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLV 67
+ + +KVL +G+ SG + +S+++ G+ G+E P++V
Sbjct: 74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVV 114
>pdb|2ERC|A Chain A, Crystal Structure Of Ermc' A Rrna-Methyl Transferase
pdb|2ERC|B Chain B, Crystal Structure Of Ermc' A Rrna-Methyl Transferase
pdb|1QAM|A Chain A, The Structure Of The Rrna Methyltransferase Ermc':
Implications For The Reaction Mechanism
pdb|1QAN|A Chain A, The Structure Of The Rrna Methyltransferase Ermc':
Implications For The Reaction Mechanism
pdb|1QAO|A Chain A, The Structure Of The Rrna Methyltransferase Ermc':
Implications For The Reaction Mechanism
pdb|1QAQ|A Chain A, The Structure Of The Rrna Methyltransferase Ermc':
Implications For The Reaction Mechanism
Length = 244
Score = 30.0 bits (66), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNIL-HSNARLLTDG 85
LNE+ + EIGSG G+ T EL+ V IE +L ++ ++ H N ++L
Sbjct: 28 LNEHDNIFEIGSGKGHFT---LELVQRCNFVTAIEIDHKLCKTTENKLVDHDNFQVLNKD 84
Query: 86 HIKF 89
++F
Sbjct: 85 ILQF 88
>pdb|3UJ6|A Chain A, Semet Phosphoethanolamine Methyltransferase From
Plasmodium Falciparum In Complex With Sam And Po4
Length = 266
Score = 30.0 bits (66), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 26 HLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNA 79
LNENSKVL+IGSG G I+E + GI+ +VN + + + +N
Sbjct: 52 ELNENSKVLDIGSGLGGGCXYINEKYGA--HTHGIDICSNIVNXANERVSGNNK 103
>pdb|4FR0|A Chain A, Arsm Arsenic(Iii) S-Adenosylmethionine Methyltransferase
With Sam
pdb|4FS8|A Chain A, The Structure Of An As(Iii) S-Adenosylmethionine
Methyltransferase: Insights Into The Mechanism Of
Arsenic Biotransformation
pdb|4FSD|A Chain A, Arsm Arsenic(Iii) S-Adenosylmethionine Methyltransferase
With As(Iii)
Length = 383
Score = 29.6 bits (65), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 17/77 (22%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Query: 29 ENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLL---TDG 85
E + VL++G G+G + S+L+ G+VIG++ + + + + + + + +
Sbjct: 83 EGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRS 142
Query: 86 HIKFVALGMIKRIETVE 102
+++F+ G I+ + T E
Sbjct: 143 NVRFLK-GFIENLATAE 158
>pdb|3UJC|A Chain A, Phosphoethanolamine Methyltransferase Mutant (H132a)
From Plasmodium Falciparum In Complex With
Phosphocholine
Length = 266
Score = 28.9 bits (63), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 13/16 (81%), Positives = 14/16 (87%)
Query: 26 HLNENSKVLEIGSGSG 41
LNENSKVL+IGSG G
Sbjct: 52 ELNENSKVLDIGSGLG 67
>pdb|3KKZ|A Chain A, Crystal Structure Of The Q5les9_bacfn Protein From
Bacteroides Fragilis. Northeast Structural Genomics
Consortium Target Bfr250.
pdb|3KKZ|B Chain B, Crystal Structure Of The Q5les9_bacfn Protein From
Bacteroides Fragilis. Northeast Structural Genomics
Consortium Target Bfr250
Length = 267
Score = 28.9 bits (63), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 8/64 (12%)
Query: 17 LTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH 76
L LS I +L E S + +IG G+G T +++ + TGQV G++ + + +I +
Sbjct: 35 LKALSFID-NLTEKSLIADIGCGTGGQTXVLA--GHVTGQVTGLDFLSGFI-----DIFN 86
Query: 77 SNAR 80
NAR
Sbjct: 87 RNAR 90
>pdb|3UJD|A Chain A, Phosphoethanolamine Methyltransferase Mutant (Y19f) From
Plasmodium Falciparum In Complex With Phosphocholine
Length = 266
Score = 28.9 bits (63), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 13/16 (81%), Positives = 14/16 (87%)
Query: 26 HLNENSKVLEIGSGSG 41
LNENSKVL+IGSG G
Sbjct: 52 ELNENSKVLDIGSGLG 67
>pdb|3UJ7|A Chain A, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Sam And Po4
pdb|3UJ7|B Chain B, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Sam And Po4
pdb|3UJ8|A Chain A, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Sinefungin And Po4
pdb|3UJ9|A Chain A, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Phosphocholine
pdb|3UJA|A Chain A, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Phosphoethanolamine
pdb|3UJB|A Chain A, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Sah And Phosphoethanolamine
pdb|3UJB|B Chain B, Phosphoethanolamine Methyltransferase From Plasmodium
Falciparum In Complex With Sah And Phosphoethanolamine
pdb|4FGZ|A Chain A, Crystal Structure Of Phosphoethanolamine
Methyltransferase From Plasmodium Falciparum In Complex
With Amodiaquine
pdb|4FGZ|B Chain B, Crystal Structure Of Phosphoethanolamine
Methyltransferase From Plasmodium Falciparum In Complex
With Amodiaquine
Length = 266
Score = 28.9 bits (63), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 13/16 (81%), Positives = 14/16 (87%)
Query: 26 HLNENSKVLEIGSGSG 41
LNENSKVL+IGSG G
Sbjct: 52 ELNENSKVLDIGSGLG 67
>pdb|2PWY|A Chain A, Crystal Structure Of A M1a58 Trna Methyltransferase
pdb|2PWY|B Chain B, Crystal Structure Of A M1a58 Trna Methyltransferase
Length = 258
Score = 28.9 bits (63), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 24/48 (50%)
Query: 27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNI 74
L +VLE G+GSG LT ++ + G V E P + + +N+
Sbjct: 94 LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNV 141
>pdb|1ZQ9|A Chain A, Crystal Structure Of Human Dimethyladenosine Transferase
pdb|1ZQ9|B Chain B, Crystal Structure Of Human Dimethyladenosine Transferase
Length = 285
Score = 28.5 bits (62), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLV 67
L VLE+G G+G NM +L+ +V+ E P+LV
Sbjct: 26 LRPTDVVLEVGPGTG---NMTVKLLEKAKKVVACELDPRLV 63
>pdb|1O54|A Chain A, Crystal Structure Of Sam-Dependent O-Methyltransferase
(Tm0748) From Thermotoga Maritima At 1.65 A Resolution
Length = 277
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 10/49 (20%), Positives = 25/49 (51%)
Query: 26 HLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNI 74
+ E ++++ G GSG + +++ + S+G+V E + + N+
Sbjct: 109 DVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNL 157
>pdb|3DUL|A Chain A, Crystal Structure Analysis Of The O-Methyltransferase From
Bacillus Cereus
pdb|3DUL|B Chain B, Crystal Structure Analysis Of The O-Methyltransferase From
Bacillus Cereus
pdb|3DUW|A Chain A, Crystal Structural Analysis Of The O-Methyltransferase
From Bacillus Cereus In Complex Sah
pdb|3DUW|B Chain B, Crystal Structural Analysis Of The O-Methyltransferase
From Bacillus Cereus In Complex Sah
Length = 223
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 42/81 (51%), Gaps = 5/81 (6%)
Query: 33 VLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVAL 92
+LEIG+ GY T ++ ++S G+V+ +E + + + NI +N + AL
Sbjct: 62 ILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGL-AL 120
Query: 93 GMIKRIETVELMMKFDRYDFL 113
+++IE K++ +DF+
Sbjct: 121 DSLQQIEN----EKYEPFDFI 137
>pdb|3SM3|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferases
Q8puk2_metma From Methanosarcina Mazei. Northeast
Structural Genomics Consortium Target Mar262
Length = 235
Score = 28.1 bits (61), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 8/59 (13%)
Query: 22 IIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNAR 80
II +L E+ ++L+IG GSG ++ EL + V GI+ +NS + + AR
Sbjct: 23 IIHNYLQEDDEILDIGCGSGKIS---LELASKGYSVTGID-----INSEAIRLAETAAR 73
>pdb|3BZB|A Chain A, Crystal Structure Of Uncharacterized Protein Cmq451c From
The Primitive Red Alga Cyanidioschyzon Merolae
pdb|3BZB|B Chain B, Crystal Structure Of Uncharacterized Protein Cmq451c From
The Primitive Red Alga Cyanidioschyzon Merolae
Length = 281
Score = 27.7 bits (60), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 24 QPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHV-PQLVNSSIQNILHSNARLL 82
QP L V E+G+G+G ++ I + QV+ ++ P+++NS NI A
Sbjct: 74 QPELIAGKTVCELGAGAGLVS--IVAFLAGADQVVATDYPDPEILNSLESNIREHTANSC 131
Query: 83 TDGHIK 88
+ +K
Sbjct: 132 SSETVK 137
>pdb|1UNG|D Chain D, Structural Mechanism For The Inhibition Of Cdk5-P25 By
Roscovitine, Aloisine And Indirubin.
pdb|1UNG|E Chain E, Structural Mechanism For The Inhibition Of Cdk5-P25 By
Roscovitine, Aloisine And Indirubin.
pdb|1UNH|D Chain D, Structural Mechanism For The Inhibition Of Cdk5-P25 By
Roscovitine, Aloisine And Indirubin.
pdb|1UNH|E Chain E, Structural Mechanism For The Inhibition Of Cdk5-P25 By
Roscovitine, Aloisine And Indirubin.
pdb|1UNL|D Chain D, Structural Mechanism For The Inhibition Of Cd5-P25 From
The Roscovitine, Aloisine And Indirubin.
pdb|1UNL|E Chain E, Structural Mechanism For The Inhibition Of Cd5-P25 From
The Roscovitine, Aloisine And Indirubin
Length = 208
Score = 27.3 bits (59), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 30 NSKVLEIGSGSGYLTNMISELMNSTGQ 56
+SK+L+I + Y T + S+L N +GQ
Sbjct: 170 SSKMLQINADPHYFTQVFSDLKNESGQ 196
>pdb|3TFW|A Chain A, Crystal Structure Of A Putative O-Methyltransferase From
Klebsiella Pneumoniae
pdb|3TFW|B Chain B, Crystal Structure Of A Putative O-Methyltransferase From
Klebsiella Pneumoniae
Length = 248
Score = 26.9 bits (58), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 26 HLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIE---HVPQLVNSSIQ 72
L + ++LEIG+ GY T + + + GQ++ +E H Q+ ++Q
Sbjct: 60 RLTQAKRILEIGTLGGYSTIWXARELPADGQLLTLEADAHHAQVARENLQ 109
>pdb|1ORH|A Chain A, Structure Of The Predominant Protein Arginine
Methyltransferase Prmt1
Length = 353
Score = 26.9 bits (58), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 26 HLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIE 61
HL ++ VL++GSG+G L ++ +VIGIE
Sbjct: 67 HLFKDKVVLDVGSGTGILCMFAAKA--GARKVIGIE 100
>pdb|1OR8|A Chain A, Structure Of The Predominant Protein Arginine
Methyltransferase Prmt1
Length = 340
Score = 26.6 bits (57), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 26 HLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIE 61
HL ++ VL++GSG+G L ++ +VIGIE
Sbjct: 54 HLFKDKVVLDVGSGTGILCMFAAKA--GARKVIGIE 87
>pdb|1ORI|A Chain A, Structure Of The Predominant Protein Arginine
Methyltransferase Prmt1
Length = 343
Score = 26.6 bits (57), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 26 HLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIE 61
HL ++ VL++GSG+G L ++ +VIGIE
Sbjct: 57 HLFKDKVVLDVGSGTGILCMFAAKA--GARKVIGIE 90
>pdb|3Q7E|A Chain A, Crystal Structure Of Rat Protein Arginine
Methyltransferase 1 (Prmt1) M48l Mutant
Length = 349
Score = 26.6 bits (57), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 26 HLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIE 61
HL ++ VL++GSG+G L ++ +VIGIE
Sbjct: 63 HLFKDKVVLDVGSGTGILCMFAAKA--GARKVIGIE 96
>pdb|1O5Z|A Chain A, Crystal Structure Of Folylpolyglutamate Synthase
(Tm0166) From Thermotoga Maritima At 2.10 A Resolution
Length = 442
Score = 26.2 bits (56), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 25 PHLNENSKVLEIG--SGSGYLTNMISELMNSTGQVIGIEHVPQL 66
PHL K + IG +G G + NM+S ++ S G +G + P L
Sbjct: 48 PHLE--YKTIHIGGTNGKGSVANMVSNILVSQGYRVGSYYSPHL 89
>pdb|3MB5|A Chain A, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Methionine
Length = 255
Score = 26.2 bits (56), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 22/42 (52%)
Query: 33 VLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNI 74
++E G GSG LT ++ ++ G+V+ E + +NI
Sbjct: 97 IVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENI 138
>pdb|3EEY|A Chain A, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|B Chain B, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|C Chain C, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|D Chain D, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|E Chain E, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|F Chain F, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|G Chain G, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|H Chain H, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|I Chain I, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
pdb|3EEY|J Chain J, Crystal Structure Of Putative Rrna-Methylase From
Clostridium Thermocellum
Length = 197
Score = 26.2 bits (56), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/68 (22%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 23 IQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSN---- 78
I+ + E V++ G+G T ++ L+ G+V G + + + ++ + + N
Sbjct: 16 IKMFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDR 75
Query: 79 ARLLTDGH 86
L+ DGH
Sbjct: 76 VTLIKDGH 83
>pdb|3LHD|C Chain C, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LHD|A Chain A, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LHD|B Chain B, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LHD|D Chain D, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|A Chain A, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|B Chain B, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|C Chain C, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|D Chain D, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
Length = 253
Score = 26.2 bits (56), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 22/42 (52%)
Query: 33 VLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNI 74
++E G GSG LT ++ ++ G+V+ E + +NI
Sbjct: 97 IVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENI 138
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,679,581
Number of Sequences: 62578
Number of extensions: 130442
Number of successful extensions: 441
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 409
Number of HSP's gapped (non-prelim): 42
length of query: 139
length of database: 14,973,337
effective HSP length: 89
effective length of query: 50
effective length of database: 9,403,895
effective search space: 470194750
effective search space used: 470194750
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)