Query psy5757
Match_columns 139
No_of_seqs 102 out of 1995
Neff 9.2
Searched_HMMs 46136
Date Fri Aug 16 17:15:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5757.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5757hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK13942 protein-L-isoaspartat 99.7 4.9E-17 1.1E-21 115.5 9.8 118 4-138 53-171 (212)
2 PRK13944 protein-L-isoaspartat 99.7 6.7E-17 1.4E-21 114.3 9.8 118 5-138 50-168 (205)
3 COG2518 Pcm Protein-L-isoaspar 99.7 7.8E-17 1.7E-21 112.9 9.9 105 4-124 49-153 (209)
4 PF01135 PCMT: Protein-L-isoas 99.7 3.9E-17 8.6E-22 115.6 8.0 106 4-123 49-155 (209)
5 COG2226 UbiE Methylase involve 99.7 4.9E-17 1.1E-21 116.7 8.1 98 28-138 50-151 (238)
6 TIGR00080 pimt protein-L-isoas 99.7 1.4E-16 3.1E-21 113.3 9.9 117 5-138 55-172 (215)
7 PF01209 Ubie_methyltran: ubiE 99.7 3.5E-17 7.5E-22 117.7 6.2 100 27-138 45-148 (233)
8 PF13847 Methyltransf_31: Meth 99.7 1.4E-16 3E-21 107.5 6.6 99 28-137 2-104 (152)
9 PLN02233 ubiquinone biosynthes 99.7 6.3E-16 1.4E-20 113.0 9.6 103 27-138 71-177 (261)
10 PF12847 Methyltransf_18: Meth 99.7 3.6E-16 7.9E-21 99.9 7.2 98 29-138 1-106 (112)
11 TIGR02752 MenG_heptapren 2-hep 99.6 1.4E-15 3.1E-20 108.9 9.3 100 27-138 43-146 (231)
12 PLN02244 tocopherol O-methyltr 99.6 4E-15 8.7E-20 112.5 9.3 99 28-139 117-219 (340)
13 PF08241 Methyltransf_11: Meth 99.6 9.7E-16 2.1E-20 94.7 4.4 89 34-138 1-92 (95)
14 PRK14103 trans-aconitate 2-met 99.6 3.1E-15 6.7E-20 108.9 7.4 100 17-138 19-121 (255)
15 PRK15451 tRNA cmo(5)U34 methyl 99.6 4.9E-15 1.1E-19 107.5 8.4 101 26-139 53-160 (247)
16 PRK11036 putative S-adenosyl-L 99.6 6.2E-15 1.3E-19 107.3 8.5 98 28-138 43-144 (255)
17 PRK00312 pcm protein-L-isoaspa 99.6 1.1E-14 2.3E-19 103.4 9.2 113 6-138 57-170 (212)
18 TIGR00138 gidB 16S rRNA methyl 99.6 3.9E-15 8.5E-20 103.4 6.3 96 29-139 42-138 (181)
19 PRK00107 gidB 16S rRNA methylt 99.6 7.2E-15 1.6E-19 102.5 7.5 98 26-138 42-140 (187)
20 PRK01683 trans-aconitate 2-met 99.6 7.9E-15 1.7E-19 106.8 7.8 94 27-138 29-125 (258)
21 PRK11207 tellurite resistance 99.6 9.3E-15 2E-19 102.7 7.7 104 17-138 20-129 (197)
22 TIGR02469 CbiT precorrin-6Y C5 99.6 1.9E-14 4.2E-19 93.2 8.5 113 13-139 5-118 (124)
23 PRK08287 cobalt-precorrin-6Y C 99.6 2.3E-14 5E-19 99.8 8.6 112 10-138 14-126 (187)
24 PRK11873 arsM arsenite S-adeno 99.6 1.8E-14 3.8E-19 105.8 8.3 101 27-139 75-179 (272)
25 COG2227 UbiG 2-polyprenyl-3-me 99.6 4.2E-15 9.2E-20 105.7 4.8 95 28-138 58-156 (243)
26 TIGR00740 methyltransferase, p 99.6 2.6E-14 5.6E-19 103.1 8.8 100 27-139 51-157 (239)
27 PLN02396 hexaprenyldihydroxybe 99.6 1.1E-14 2.3E-19 109.2 7.0 96 29-138 131-230 (322)
28 COG4123 Predicted O-methyltran 99.5 3.1E-14 6.7E-19 102.5 8.9 87 27-123 42-129 (248)
29 COG4106 Tam Trans-aconitate me 99.5 7.3E-15 1.6E-19 102.9 4.9 80 28-125 29-108 (257)
30 PF05175 MTS: Methyltransferas 99.5 9.4E-14 2E-18 95.5 10.3 93 16-124 20-113 (170)
31 PRK10258 biotin biosynthesis p 99.5 2.2E-14 4.7E-19 104.1 7.4 91 29-138 42-135 (251)
32 COG2242 CobL Precorrin-6B meth 99.5 9.8E-14 2.1E-18 95.6 9.1 114 10-138 17-130 (187)
33 PRK00377 cbiT cobalt-precorrin 99.5 1.1E-13 2.4E-18 97.3 9.3 102 27-138 38-140 (198)
34 PTZ00098 phosphoethanolamine N 99.5 6.9E-14 1.5E-18 102.4 8.6 106 16-138 41-151 (263)
35 PRK15001 SAM-dependent 23S rib 99.5 7.1E-14 1.5E-18 106.7 8.7 98 30-138 229-335 (378)
36 PRK00121 trmB tRNA (guanine-N( 99.5 5.6E-14 1.2E-18 99.2 7.6 101 28-138 39-151 (202)
37 PLN02336 phosphoethanolamine N 99.5 9E-14 1.9E-18 109.2 9.0 106 17-138 256-364 (475)
38 PF02353 CMAS: Mycolic acid cy 99.5 5.4E-14 1.2E-18 103.4 6.6 96 27-138 60-161 (273)
39 PF08242 Methyltransf_12: Meth 99.5 7.1E-16 1.5E-20 96.8 -2.9 95 34-139 1-99 (99)
40 PF13649 Methyltransf_25: Meth 99.5 4.4E-14 9.5E-19 89.1 5.3 92 33-137 1-101 (101)
41 TIGR00091 tRNA (guanine-N(7)-) 99.5 1.5E-13 3.2E-18 96.4 8.1 101 29-139 16-128 (194)
42 PLN02781 Probable caffeoyl-CoA 99.5 2.2E-13 4.7E-18 98.2 8.8 97 16-118 56-153 (234)
43 COG2230 Cfa Cyclopropane fatty 99.5 1.5E-13 3.3E-18 100.5 8.0 96 27-138 70-171 (283)
44 TIGR03533 L3_gln_methyl protei 99.5 3.8E-13 8.2E-18 99.5 10.2 103 5-120 95-200 (284)
45 TIGR00477 tehB tellurite resis 99.5 1.4E-13 2.9E-18 96.7 7.4 103 17-138 20-128 (195)
46 PRK13943 protein-L-isoaspartat 99.5 3.1E-13 6.8E-18 101.3 9.8 101 8-122 61-162 (322)
47 COG2264 PrmA Ribosomal protein 99.5 4.9E-14 1.1E-18 103.9 5.3 121 4-138 135-258 (300)
48 COG2890 HemK Methylase of poly 99.5 2.7E-13 5.8E-18 100.0 8.9 98 5-118 86-185 (280)
49 PF06325 PrmA: Ribosomal prote 99.5 5E-14 1.1E-18 104.3 4.8 117 4-137 134-253 (295)
50 TIGR00406 prmA ribosomal prote 99.5 1.5E-13 3.3E-18 101.8 7.4 108 16-138 146-254 (288)
51 PRK08317 hypothetical protein; 99.5 4E-13 8.8E-18 95.9 9.2 107 18-138 10-119 (241)
52 PF13659 Methyltransf_26: Meth 99.5 8.2E-13 1.8E-17 85.0 9.8 82 30-122 1-83 (117)
53 PRK15068 tRNA mo(5)U34 methylt 99.5 3.1E-13 6.8E-18 101.5 8.5 97 28-138 121-221 (322)
54 KOG1270|consensus 99.5 7.2E-14 1.6E-18 100.4 4.6 94 30-139 90-191 (282)
55 PLN02490 MPBQ/MSBQ methyltrans 99.5 2.9E-13 6.3E-18 102.0 8.0 96 28-138 112-210 (340)
56 PRK09489 rsmC 16S ribosomal RN 99.5 2.5E-13 5.5E-18 102.7 7.6 104 17-138 186-298 (342)
57 TIGR00537 hemK_rel_arch HemK-r 99.4 5E-13 1.1E-17 92.5 8.5 80 28-124 18-97 (179)
58 TIGR02072 BioC biotin biosynth 99.4 3.4E-13 7.4E-18 96.4 7.8 106 17-138 21-130 (240)
59 TIGR03587 Pse_Me-ase pseudamin 99.4 8.5E-13 1.8E-17 93.3 9.3 80 26-123 40-119 (204)
60 PHA03412 putative methyltransf 99.4 7.1E-13 1.5E-17 94.9 8.9 98 5-123 29-128 (241)
61 PRK11805 N5-glutamine S-adenos 99.4 1E-12 2.2E-17 98.2 10.0 102 5-119 107-211 (307)
62 PF01596 Methyltransf_3: O-met 99.4 3.8E-13 8.2E-18 95.0 7.3 97 16-118 33-130 (205)
63 TIGR00452 methyltransferase, p 99.4 6.3E-13 1.4E-17 99.4 8.5 97 28-138 120-220 (314)
64 PLN02476 O-methyltransferase 99.4 8.5E-13 1.8E-17 96.9 8.9 97 16-118 106-203 (278)
65 PRK14896 ksgA 16S ribosomal RN 99.4 2E-12 4.3E-17 94.4 10.8 97 5-121 6-103 (258)
66 PRK14966 unknown domain/N5-glu 99.4 1.8E-12 3.9E-17 99.6 10.6 103 5-120 228-330 (423)
67 smart00828 PKS_MT Methyltransf 99.4 4.1E-13 8.9E-18 95.8 6.3 95 31-138 1-99 (224)
68 PTZ00338 dimethyladenosine tra 99.4 2.8E-12 6.1E-17 95.2 10.7 99 5-121 13-113 (294)
69 PRK01544 bifunctional N5-gluta 99.4 1.5E-12 3.2E-17 103.1 9.6 79 30-121 139-218 (506)
70 smart00650 rADc Ribosomal RNA 99.4 2.7E-12 5.9E-17 88.1 9.6 87 17-121 3-89 (169)
71 PRK06922 hypothetical protein; 99.4 6.4E-13 1.4E-17 106.5 7.2 101 28-139 417-533 (677)
72 KOG1540|consensus 99.4 1.5E-12 3.2E-17 93.4 8.3 103 28-139 99-210 (296)
73 PRK00517 prmA ribosomal protei 99.4 6.7E-13 1.5E-17 96.5 6.6 102 16-138 106-208 (250)
74 COG2263 Predicted RNA methylas 99.4 4.8E-12 1E-16 87.2 10.4 96 8-120 23-119 (198)
75 TIGR03534 RF_mod_PrmC protein- 99.4 4.2E-12 9.2E-17 91.7 10.4 79 29-121 87-166 (251)
76 PF07021 MetW: Methionine bios 99.4 1.4E-12 3.1E-17 90.4 7.0 87 22-126 6-92 (193)
77 COG2813 RsmC 16S RNA G1207 met 99.4 3.3E-12 7.1E-17 94.0 9.3 97 28-138 157-261 (300)
78 TIGR00536 hemK_fam HemK family 99.4 3.6E-12 7.9E-17 94.3 9.7 77 31-120 116-193 (284)
79 PRK06202 hypothetical protein; 99.4 1.4E-12 2.9E-17 93.7 7.2 84 28-125 59-145 (232)
80 PRK07402 precorrin-6B methylas 99.4 2.4E-12 5.2E-17 90.3 8.2 114 10-138 23-137 (196)
81 PHA03411 putative methyltransf 99.4 5.1E-12 1.1E-16 92.3 10.0 97 6-124 45-141 (279)
82 PRK12335 tellurite resistance 99.4 2E-12 4.2E-17 95.8 8.0 94 29-138 120-218 (287)
83 PRK11188 rrmJ 23S rRNA methylt 99.4 2.3E-12 5E-17 91.4 7.9 97 27-139 49-161 (209)
84 PRK00274 ksgA 16S ribosomal RN 99.4 4.7E-12 1E-16 93.1 9.6 97 5-120 19-116 (272)
85 PRK00216 ubiE ubiquinone/menaq 99.4 6.1E-12 1.3E-16 90.0 9.8 99 28-137 50-152 (239)
86 PRK14121 tRNA (guanine-N(7)-)- 99.4 4.9E-12 1.1E-16 96.6 9.5 100 28-138 121-230 (390)
87 KOG1661|consensus 99.4 2.5E-12 5.4E-17 89.8 6.9 115 3-123 56-176 (237)
88 PRK14967 putative methyltransf 99.4 5.5E-12 1.2E-16 90.2 8.8 81 27-122 34-114 (223)
89 PRK05785 hypothetical protein; 99.4 6.1E-12 1.3E-16 90.3 9.0 97 18-135 40-139 (226)
90 TIGR02081 metW methionine bios 99.3 1.9E-12 4.1E-17 90.7 5.8 84 26-127 10-93 (194)
91 PRK11705 cyclopropane fatty ac 99.3 4.1E-12 8.9E-17 97.5 8.1 93 27-138 165-262 (383)
92 TIGR02021 BchM-ChlM magnesium 99.3 1.1E-11 2.5E-16 88.2 9.7 90 18-124 44-134 (219)
93 PRK10909 rsmD 16S rRNA m(2)G96 99.3 2.7E-11 5.8E-16 85.3 11.4 89 18-120 43-132 (199)
94 PLN02336 phosphoethanolamine N 99.3 3.1E-12 6.8E-17 100.5 7.1 106 17-138 27-137 (475)
95 PRK04266 fibrillarin; Provisio 99.3 4.2E-12 9.1E-17 91.1 6.9 102 27-139 70-172 (226)
96 TIGR00755 ksgA dimethyladenosi 99.3 1.7E-11 3.7E-16 89.3 10.1 97 5-121 6-106 (253)
97 PRK13168 rumA 23S rRNA m(5)U19 99.3 2E-11 4.4E-16 95.4 11.1 82 27-119 295-377 (443)
98 PRK14968 putative methyltransf 99.3 1.3E-11 2.9E-16 85.4 8.7 90 16-121 12-102 (188)
99 TIGR01934 MenG_MenH_UbiE ubiqu 99.3 1.5E-11 3.2E-16 87.2 9.0 98 28-138 38-138 (223)
100 TIGR01177 conserved hypothetic 99.3 7.3E-12 1.6E-16 94.4 7.9 106 16-138 171-289 (329)
101 TIGR03704 PrmC_rel_meth putati 99.3 2.3E-11 5E-16 88.5 10.1 78 30-120 87-164 (251)
102 PLN03075 nicotianamine synthas 99.3 9.8E-12 2.1E-16 91.9 8.2 98 29-138 123-228 (296)
103 PF13489 Methyltransf_23: Meth 99.3 6.7E-12 1.5E-16 84.6 6.5 97 18-138 11-110 (161)
104 PRK11088 rrmA 23S rRNA methylt 99.3 1.3E-11 2.9E-16 90.7 8.3 90 29-138 85-176 (272)
105 PRK07580 Mg-protoporphyrin IX 99.3 3.6E-11 7.7E-16 85.9 10.1 81 28-125 62-143 (230)
106 COG4122 Predicted O-methyltran 99.3 3.4E-11 7.4E-16 85.5 9.5 93 16-118 47-141 (219)
107 TIGR02716 C20_methyl_CrtF C-20 99.3 2.3E-11 5E-16 90.8 8.9 98 27-139 147-250 (306)
108 PF08704 GCD14: tRNA methyltra 99.3 7.4E-11 1.6E-15 85.4 11.2 98 16-124 29-128 (247)
109 PRK03522 rumB 23S rRNA methylu 99.3 5.4E-11 1.2E-15 89.2 10.3 76 29-118 173-249 (315)
110 PRK09328 N5-glutamine S-adenos 99.3 6.2E-11 1.3E-15 86.9 10.1 80 28-120 107-186 (275)
111 PLN02589 caffeoyl-CoA O-methyl 99.3 4E-11 8.8E-16 86.9 8.9 97 16-118 67-165 (247)
112 smart00138 MeTrc Methyltransfe 99.3 9.3E-12 2E-16 91.2 5.7 104 29-138 99-237 (264)
113 PF05401 NodS: Nodulation prot 99.2 3.9E-11 8.4E-16 83.5 8.0 93 29-138 43-141 (201)
114 TIGR03438 probable methyltrans 99.2 3.8E-11 8.3E-16 89.5 8.6 116 18-138 52-172 (301)
115 PRK15128 23S rRNA m(5)C1962 me 99.2 6.9E-11 1.5E-15 91.0 10.1 84 28-119 219-303 (396)
116 KOG2904|consensus 99.2 7.8E-11 1.7E-15 85.4 9.7 113 5-124 120-237 (328)
117 PLN02585 magnesium protoporphy 99.2 1E-10 2.2E-15 87.6 10.5 98 16-125 130-228 (315)
118 TIGR00479 rumA 23S rRNA (uraci 99.2 1.4E-10 3E-15 90.4 11.2 81 27-118 290-371 (431)
119 COG0030 KsgA Dimethyladenosine 99.2 1.2E-10 2.6E-15 84.6 9.8 97 5-118 7-104 (259)
120 PF03848 TehB: Tellurite resis 99.2 1.4E-10 3.1E-15 81.0 9.8 90 17-125 20-110 (192)
121 PRK04457 spermidine synthase; 99.2 6.3E-11 1.4E-15 86.8 8.4 79 28-117 65-144 (262)
122 PRK05031 tRNA (uracil-5-)-meth 99.2 1.8E-10 3.8E-15 88.0 10.9 96 14-118 190-297 (362)
123 PLN02672 methionine S-methyltr 99.2 1.2E-10 2.6E-15 98.3 10.8 109 4-119 91-213 (1082)
124 TIGR03840 TMPT_Se_Te thiopurin 99.2 5.9E-11 1.3E-15 84.4 7.7 103 28-138 33-147 (213)
125 COG2519 GCD14 tRNA(1-methylade 99.2 1.7E-10 3.7E-15 82.9 9.5 91 16-120 83-174 (256)
126 TIGR00095 RNA methyltransferas 99.2 4.8E-10 1E-14 78.4 11.2 84 28-120 48-132 (189)
127 PTZ00146 fibrillarin; Provisio 99.2 7.6E-11 1.6E-15 87.0 7.4 102 27-138 130-232 (293)
128 PRK11727 23S rRNA mA1618 methy 99.2 2.1E-10 4.5E-15 86.0 9.5 87 29-122 114-202 (321)
129 TIGR01983 UbiG ubiquinone bios 99.2 1E-10 2.2E-15 83.3 7.2 109 16-138 30-144 (224)
130 TIGR00446 nop2p NOL1/NOP2/sun 99.2 4.1E-10 8.9E-15 82.5 10.5 80 27-118 69-149 (264)
131 TIGR02085 meth_trns_rumB 23S r 99.2 3E-10 6.6E-15 87.0 10.1 99 7-119 208-310 (374)
132 PRK14902 16S rRNA methyltransf 99.2 3.8E-10 8.2E-15 88.3 10.5 81 27-118 248-329 (444)
133 TIGR02143 trmA_only tRNA (urac 99.2 5E-10 1.1E-14 85.2 10.7 95 15-118 182-288 (353)
134 PRK00811 spermidine synthase; 99.2 1.8E-10 3.9E-15 85.2 8.0 104 28-138 75-186 (283)
135 PF03602 Cons_hypoth95: Conser 99.1 5.9E-10 1.3E-14 77.6 9.9 95 18-122 31-127 (183)
136 PRK10901 16S rRNA methyltransf 99.1 3.1E-10 6.7E-15 88.4 9.1 87 18-118 235-322 (427)
137 KOG2915|consensus 99.1 4.1E-10 8.8E-15 81.6 8.6 103 16-129 94-197 (314)
138 KOG0820|consensus 99.1 7.7E-10 1.7E-14 80.2 9.9 92 11-120 42-134 (315)
139 PRK00050 16S rRNA m(4)C1402 me 99.1 1.3E-09 2.9E-14 80.8 11.3 105 16-131 8-115 (296)
140 KOG3420|consensus 99.1 2.5E-10 5.4E-15 75.7 6.5 102 5-120 22-125 (185)
141 PRK14904 16S rRNA methyltransf 99.1 8.3E-10 1.8E-14 86.4 10.6 79 27-118 248-327 (445)
142 KOG1663|consensus 99.1 5.3E-10 1.1E-14 79.3 8.5 100 12-118 58-158 (237)
143 PRK05134 bifunctional 3-demeth 99.1 5.2E-10 1.1E-14 80.3 8.6 97 28-138 47-146 (233)
144 PRK14903 16S rRNA methyltransf 99.1 1.1E-09 2.4E-14 85.3 11.0 81 27-118 235-316 (431)
145 PF09445 Methyltransf_15: RNA 99.1 4.7E-10 1E-14 76.4 7.4 76 32-119 2-79 (163)
146 KOG3010|consensus 99.1 5.4E-11 1.2E-15 84.8 2.8 93 32-137 36-130 (261)
147 COG1092 Predicted SAM-dependen 99.1 1E-09 2.2E-14 84.1 9.7 88 22-118 211-299 (393)
148 PRK13255 thiopurine S-methyltr 99.1 5.5E-10 1.2E-14 79.8 7.7 104 27-138 35-150 (218)
149 TIGR00438 rrmJ cell division p 99.1 3E-10 6.6E-15 79.1 6.2 76 27-118 30-107 (188)
150 PRK11783 rlmL 23S rRNA m(2)G24 99.1 9.4E-10 2E-14 90.3 9.9 81 28-119 537-618 (702)
151 PF08003 Methyltransf_9: Prote 99.1 3.8E-10 8.2E-15 83.3 6.6 85 28-126 114-199 (315)
152 PRK14901 16S rRNA methyltransf 99.1 1.7E-09 3.7E-14 84.4 10.5 84 27-118 250-334 (434)
153 KOG1541|consensus 99.1 4E-10 8.8E-15 79.5 6.3 91 14-124 35-127 (270)
154 TIGR00563 rsmB ribosomal RNA s 99.1 7.5E-10 1.6E-14 86.2 8.3 90 17-118 228-318 (426)
155 PLN02366 spermidine synthase 99.0 1.1E-09 2.5E-14 81.8 8.2 104 28-138 90-201 (308)
156 PRK03612 spermidine synthase; 99.0 1.1E-09 2.3E-14 87.3 7.8 105 28-138 296-410 (521)
157 PF01170 UPF0020: Putative RNA 99.0 7.1E-09 1.5E-13 71.9 10.4 96 13-121 14-118 (179)
158 TIGR00417 speE spermidine synt 99.0 2E-09 4.4E-14 79.1 8.0 103 28-138 71-181 (270)
159 KOG3191|consensus 99.0 2.6E-09 5.7E-14 73.3 7.8 77 30-119 44-120 (209)
160 cd02440 AdoMet_MTases S-adenos 99.0 1.8E-09 3.9E-14 66.4 6.4 95 32-138 1-99 (107)
161 COG2265 TrmA SAM-dependent met 99.0 3.5E-09 7.6E-14 82.4 9.2 95 12-118 274-371 (432)
162 PRK01581 speE spermidine synth 99.0 2.3E-09 4.9E-14 81.3 7.9 106 27-138 148-263 (374)
163 TIGR02987 met_A_Alw26 type II 99.0 2.7E-09 5.9E-14 85.1 8.4 111 5-122 2-125 (524)
164 COG0742 N6-adenine-specific me 99.0 1.4E-08 3E-13 70.4 10.8 84 28-121 42-126 (187)
165 KOG4300|consensus 99.0 5.6E-10 1.2E-14 78.1 3.3 97 31-139 78-178 (252)
166 PF10672 Methyltrans_SAM: S-ad 98.9 2.4E-08 5.2E-13 73.8 12.0 82 28-118 122-204 (286)
167 PF00398 RrnaAD: Ribosomal RNA 98.9 1E-08 2.2E-13 75.1 9.7 100 5-119 7-107 (262)
168 PF05958 tRNA_U5-meth_tr: tRNA 98.9 6E-09 1.3E-13 79.3 8.5 104 6-118 171-287 (352)
169 PF02384 N6_Mtase: N-6 DNA Met 98.9 8.4E-09 1.8E-13 77.1 9.1 108 5-122 24-138 (311)
170 COG3963 Phospholipid N-methylt 98.9 1.7E-08 3.8E-13 68.5 9.4 101 7-120 27-128 (194)
171 KOG1499|consensus 98.9 7.9E-09 1.7E-13 77.3 8.2 99 26-138 57-162 (346)
172 KOG1271|consensus 98.8 1.7E-08 3.7E-13 69.5 7.6 91 15-117 47-144 (227)
173 PF02390 Methyltransf_4: Putat 98.8 4.4E-08 9.4E-13 68.9 9.9 82 30-121 18-100 (195)
174 COG4976 Predicted methyltransf 98.8 2.5E-09 5.4E-14 76.0 2.0 110 10-138 108-220 (287)
175 COG2521 Predicted archaeal met 98.8 3.9E-09 8.4E-14 75.2 2.9 102 27-138 132-240 (287)
176 PF02475 Met_10: Met-10+ like- 98.8 8.2E-08 1.8E-12 67.7 9.2 84 22-118 94-178 (200)
177 KOG1500|consensus 98.7 3.6E-08 7.8E-13 73.8 6.9 77 28-118 176-252 (517)
178 PRK13256 thiopurine S-methyltr 98.7 3.5E-08 7.6E-13 70.7 6.5 105 28-138 42-158 (226)
179 TIGR00006 S-adenosyl-methyltra 98.7 3.4E-07 7.3E-12 68.3 11.5 106 16-131 9-117 (305)
180 KOG2187|consensus 98.7 3.7E-08 8E-13 77.0 6.2 82 27-118 381-464 (534)
181 PF00891 Methyltransf_2: O-met 98.7 3.2E-08 7E-13 71.4 4.8 88 27-136 98-190 (241)
182 PRK11783 rlmL 23S rRNA m(2)G24 98.7 2.9E-07 6.2E-12 75.9 10.7 96 16-121 178-315 (702)
183 KOG2899|consensus 98.7 2.3E-08 5.1E-13 71.6 3.8 49 27-76 56-104 (288)
184 PLN02823 spermine synthase 98.6 2.2E-07 4.7E-12 70.3 9.0 83 28-117 102-184 (336)
185 PF05724 TPMT: Thiopurine S-me 98.6 1.3E-07 2.8E-12 67.6 7.2 109 6-125 17-132 (218)
186 PF05185 PRMT5: PRMT5 arginine 98.6 1.7E-07 3.7E-12 73.4 8.3 77 30-118 187-267 (448)
187 KOG2730|consensus 98.6 1.9E-07 4.1E-12 66.1 7.6 91 17-118 83-174 (263)
188 KOG2940|consensus 98.6 3E-08 6.5E-13 70.7 3.6 97 28-139 71-170 (325)
189 PRK04148 hypothetical protein; 98.6 3.4E-07 7.5E-12 60.4 8.2 72 28-119 15-87 (134)
190 COG0293 FtsJ 23S rRNA methylas 98.6 1.2E-07 2.7E-12 66.6 6.4 98 26-139 42-155 (205)
191 PRK04338 N(2),N(2)-dimethylgua 98.6 3E-07 6.6E-12 70.7 8.7 76 30-118 58-134 (382)
192 COG0220 Predicted S-adenosylme 98.6 5.2E-07 1.1E-11 64.8 8.3 78 31-118 50-128 (227)
193 COG1041 Predicted DNA modifica 98.5 6.7E-07 1.5E-11 67.4 8.1 90 16-121 185-276 (347)
194 COG2520 Predicted methyltransf 98.5 6.7E-07 1.5E-11 67.5 8.1 80 26-118 185-265 (341)
195 PRK01544 bifunctional N5-gluta 98.5 5.1E-07 1.1E-11 71.8 7.9 99 29-138 347-457 (506)
196 PF03291 Pox_MCEL: mRNA cappin 98.5 1.2E-06 2.5E-11 66.3 9.3 92 29-124 62-160 (331)
197 COG0116 Predicted N6-adenine-s 98.5 1.6E-06 3.5E-11 66.1 9.6 82 28-120 190-310 (381)
198 PF04816 DUF633: Family of unk 98.5 1.2E-06 2.5E-11 62.1 8.1 61 33-99 1-62 (205)
199 TIGR00478 tly hemolysin TlyA f 98.5 1.2E-06 2.5E-11 63.1 8.1 40 28-69 74-113 (228)
200 PRK10742 putative methyltransf 98.5 2.8E-06 6.1E-11 61.5 10.1 87 27-121 84-176 (250)
201 PRK11933 yebU rRNA (cytosine-C 98.4 3.3E-06 7.1E-11 66.6 10.8 81 27-118 111-192 (470)
202 PF02527 GidB: rRNA small subu 98.4 8.1E-06 1.8E-10 56.9 11.6 88 17-118 33-124 (184)
203 PLN02232 ubiquinone biosynthes 98.4 1.8E-07 3.9E-12 63.7 3.1 72 58-138 1-76 (160)
204 COG4076 Predicted RNA methylas 98.4 4.9E-07 1.1E-11 62.8 5.2 70 31-117 34-104 (252)
205 PF05219 DREV: DREV methyltran 98.4 1.4E-06 3E-11 63.3 7.5 87 29-138 94-183 (265)
206 KOG1975|consensus 98.4 4.8E-07 1E-11 67.4 5.2 108 28-138 116-232 (389)
207 PF10294 Methyltransf_16: Puta 98.4 2.3E-06 5E-11 59.0 7.5 88 27-121 43-131 (173)
208 TIGR00308 TRM1 tRNA(guanine-26 98.4 3.3E-06 7.2E-11 64.9 8.9 76 31-117 46-122 (374)
209 COG0421 SpeE Spermidine syntha 98.3 3.9E-06 8.5E-11 62.1 8.8 80 31-118 78-158 (282)
210 PF08123 DOT1: Histone methyla 98.3 4.8E-06 1E-10 59.0 8.9 98 15-118 30-131 (205)
211 PF01564 Spermine_synth: Sperm 98.3 4.6E-06 1E-10 60.7 9.0 83 28-118 75-159 (246)
212 COG2384 Predicted SAM-dependen 98.3 1.6E-06 3.5E-11 61.4 6.3 79 26-116 13-92 (226)
213 PF01189 Nol1_Nop2_Fmu: NOL1/N 98.3 1.3E-05 2.9E-10 59.4 11.5 82 27-118 83-165 (283)
214 PF04672 Methyltransf_19: S-ad 98.3 2.2E-06 4.7E-11 62.7 6.9 114 16-139 56-185 (267)
215 TIGR01444 fkbM_fam methyltrans 98.3 3.7E-06 7.9E-11 55.7 7.2 56 32-94 1-57 (143)
216 KOG2361|consensus 98.3 4.3E-07 9.4E-12 65.1 2.8 100 32-139 74-179 (264)
217 PF05971 Methyltransf_10: Prot 98.3 7.6E-06 1.6E-10 60.9 9.3 101 16-124 86-192 (299)
218 COG0275 Predicted S-adenosylme 98.3 2.9E-05 6.3E-10 57.6 11.7 93 16-117 12-104 (314)
219 PF13679 Methyltransf_32: Meth 98.2 4.3E-06 9.3E-11 55.7 6.3 49 28-76 24-75 (141)
220 PF01795 Methyltransf_5: MraW 98.2 7.8E-06 1.7E-10 61.1 8.1 106 16-131 9-118 (310)
221 PRK00536 speE spermidine synth 98.2 5.5E-06 1.2E-10 60.7 6.8 95 28-138 71-166 (262)
222 COG0286 HsdM Type I restrictio 98.1 1E-05 2.2E-10 64.2 7.5 107 6-120 165-275 (489)
223 KOG4589|consensus 98.1 6.8E-06 1.5E-10 57.1 4.8 76 27-118 67-145 (232)
224 PRK10611 chemotaxis methyltran 98.1 1.2E-05 2.5E-10 59.8 6.0 122 10-138 97-257 (287)
225 PF06080 DUF938: Protein of un 98.0 9.1E-06 2E-10 57.3 5.0 113 18-137 13-135 (204)
226 PF01739 CheR: CheR methyltran 98.0 1.3E-05 2.8E-10 56.4 5.7 122 10-137 6-169 (196)
227 TIGR03439 methyl_EasF probable 98.0 8.5E-05 1.9E-09 56.0 9.9 76 20-101 67-148 (319)
228 COG0357 GidB Predicted S-adeno 98.0 4.2E-05 9.2E-10 54.4 7.2 76 30-118 68-144 (215)
229 PF05891 Methyltransf_PK: AdoM 98.0 3.6E-05 7.8E-10 54.7 6.7 85 29-126 55-139 (218)
230 COG0144 Sun tRNA and rRNA cyto 97.9 0.00021 4.5E-09 54.7 10.4 83 27-118 154-238 (355)
231 PF09243 Rsm22: Mitochondrial 97.9 5.9E-05 1.3E-09 55.7 7.2 97 16-124 18-117 (274)
232 PF01269 Fibrillarin: Fibrilla 97.9 0.0003 6.4E-09 50.3 9.9 83 26-118 70-152 (229)
233 PF01728 FtsJ: FtsJ-like methy 97.7 3.8E-05 8.2E-10 53.0 3.6 75 29-119 23-101 (181)
234 PF04445 SAM_MT: Putative SAM- 97.7 0.00016 3.4E-09 52.1 6.8 83 31-121 77-163 (234)
235 PF13578 Methyltransf_24: Meth 97.7 6.8E-05 1.5E-09 47.2 4.2 75 34-118 1-78 (106)
236 PRK11524 putative methyltransf 97.7 0.00027 5.8E-09 52.4 7.8 46 28-76 207-252 (284)
237 PRK11760 putative 23S rRNA C24 97.7 0.00014 3E-09 55.1 6.3 71 27-118 209-279 (357)
238 PF05148 Methyltransf_8: Hypot 97.7 1.9E-05 4E-10 55.9 1.4 91 16-137 60-152 (219)
239 PF07091 FmrO: Ribosomal RNA m 97.6 0.00035 7.6E-09 50.7 7.7 92 17-123 93-185 (251)
240 PF03059 NAS: Nicotianamine sy 97.6 0.00027 5.8E-09 52.2 7.2 80 30-120 121-203 (276)
241 COG1352 CheR Methylase of chem 97.6 0.0002 4.4E-09 52.7 6.6 102 30-138 97-236 (268)
242 PF01555 N6_N4_Mtase: DNA meth 97.6 0.0003 6.4E-09 49.7 7.1 53 14-72 179-231 (231)
243 KOG3115|consensus 97.5 0.00028 6.1E-09 49.8 5.0 72 30-102 61-134 (249)
244 PF12147 Methyltransf_20: Puta 97.4 0.0018 3.9E-08 48.1 9.2 100 29-137 135-243 (311)
245 PRK13699 putative methylase; P 97.4 0.0011 2.5E-08 47.6 8.0 46 28-76 162-207 (227)
246 KOG1709|consensus 97.4 0.00086 1.9E-08 47.8 6.6 109 16-139 91-202 (271)
247 COG3897 Predicted methyltransf 97.4 0.00034 7.4E-09 49.0 4.5 74 28-118 78-151 (218)
248 KOG3045|consensus 97.3 0.00015 3.3E-09 52.9 2.3 90 16-138 168-259 (325)
249 KOG3178|consensus 97.3 0.00033 7.2E-09 52.9 3.7 87 30-137 178-269 (342)
250 COG1189 Predicted rRNA methyla 97.2 0.0013 2.8E-08 47.4 6.3 41 28-70 78-118 (245)
251 KOG3987|consensus 97.2 4.3E-05 9.3E-10 54.0 -1.3 67 4-73 85-153 (288)
252 COG4262 Predicted spermidine s 97.2 0.0036 7.8E-08 48.0 8.5 85 27-117 287-373 (508)
253 PF06962 rRNA_methylase: Putat 97.2 0.002 4.3E-08 42.9 6.3 53 56-117 1-54 (140)
254 PF11968 DUF3321: Putative met 97.1 0.00028 6.1E-09 50.1 2.2 81 31-138 53-139 (219)
255 KOG1501|consensus 97.1 0.0013 2.7E-08 51.5 5.6 52 32-90 69-121 (636)
256 COG0500 SmtA SAM-dependent met 97.1 0.0021 4.5E-08 41.3 5.8 95 33-137 52-149 (257)
257 KOG1269|consensus 97.1 0.00064 1.4E-08 52.2 3.6 100 26-138 107-210 (364)
258 KOG1596|consensus 97.0 0.00099 2.1E-08 48.3 4.2 83 26-118 153-235 (317)
259 PF03141 Methyltransf_29: Puta 97.0 0.00053 1.1E-08 54.1 2.8 88 32-138 120-214 (506)
260 PF01861 DUF43: Protein of unk 97.0 0.015 3.3E-07 42.1 9.6 78 28-118 43-121 (243)
261 PF04989 CmcI: Cephalosporin h 97.0 0.0012 2.6E-08 46.8 3.9 119 11-139 16-142 (206)
262 PF11599 AviRa: RRNA methyltra 96.9 0.0026 5.6E-08 45.3 5.4 46 30-75 52-98 (246)
263 COG3129 Predicted SAM-dependen 96.8 0.0042 9E-08 44.8 5.9 100 15-123 60-167 (292)
264 COG1889 NOP1 Fibrillarin-like 96.8 0.01 2.2E-07 42.0 7.6 80 27-117 74-153 (231)
265 PHA01634 hypothetical protein 96.7 0.0057 1.2E-07 40.2 5.5 47 28-76 27-73 (156)
266 KOG1122|consensus 96.7 0.0063 1.4E-07 47.3 6.6 81 28-118 240-321 (460)
267 cd00315 Cyt_C5_DNA_methylase C 96.7 0.0049 1.1E-07 45.6 5.7 72 32-120 2-73 (275)
268 COG4798 Predicted methyltransf 96.4 0.0026 5.7E-08 44.7 2.7 101 27-139 46-162 (238)
269 KOG1331|consensus 96.3 0.00097 2.1E-08 49.2 0.1 90 27-138 43-138 (293)
270 KOG1099|consensus 96.1 0.0077 1.7E-07 43.5 3.5 96 28-139 40-159 (294)
271 KOG2651|consensus 96.0 0.028 6.1E-07 43.4 6.5 44 28-73 152-195 (476)
272 KOG4058|consensus 96.0 0.024 5.3E-07 38.3 5.4 57 16-76 61-117 (199)
273 KOG2352|consensus 96.0 0.031 6.8E-07 44.2 6.8 85 27-125 45-130 (482)
274 PF07757 AdoMet_MTase: Predict 96.0 0.013 2.9E-07 37.2 3.9 45 16-63 43-89 (112)
275 TIGR00497 hsdM type I restrict 96.0 0.048 1.1E-06 43.7 7.9 108 6-121 194-305 (501)
276 KOG2671|consensus 95.9 0.013 2.8E-07 44.6 4.3 82 26-120 205-295 (421)
277 PF02005 TRM: N2,N2-dimethylgu 95.9 0.065 1.4E-06 41.5 8.1 79 29-117 49-129 (377)
278 PF00145 DNA_methylase: C-5 cy 95.8 0.037 7.9E-07 41.2 6.4 71 32-120 2-72 (335)
279 KOG1227|consensus 95.7 0.0038 8.2E-08 46.6 0.7 48 27-76 192-240 (351)
280 KOG0822|consensus 95.6 0.06 1.3E-06 43.3 6.9 77 31-118 369-448 (649)
281 KOG2352|consensus 95.5 0.012 2.6E-07 46.5 2.9 81 28-115 294-376 (482)
282 PF02636 Methyltransf_28: Puta 95.3 0.059 1.3E-06 39.2 5.7 46 31-76 20-72 (252)
283 KOG2198|consensus 94.9 0.11 2.4E-06 39.9 6.4 64 27-95 153-219 (375)
284 PF02254 TrkA_N: TrkA-N domain 94.9 0.13 2.9E-06 32.4 5.9 66 38-117 4-70 (116)
285 COG0270 Dcm Site-specific DNA 94.7 0.18 4E-06 38.2 7.2 77 30-121 3-79 (328)
286 COG1867 TRM1 N2,N2-dimethylgua 94.7 0.26 5.5E-06 38.0 7.8 74 30-114 53-126 (380)
287 PTZ00357 methyltransferase; Pr 94.6 0.16 3.4E-06 42.4 6.8 87 32-118 703-801 (1072)
288 TIGR00675 dcm DNA-methyltransf 94.6 0.12 2.5E-06 39.1 5.8 70 33-120 1-70 (315)
289 PF03492 Methyltransf_7: SAM d 94.2 0.28 6E-06 37.4 7.2 90 28-124 15-122 (334)
290 COG1565 Uncharacterized conser 94.2 0.3 6.6E-06 37.5 7.3 68 9-76 48-131 (370)
291 KOG0024|consensus 94.2 0.35 7.6E-06 36.8 7.4 66 7-76 149-215 (354)
292 KOG2078|consensus 93.9 0.072 1.6E-06 41.7 3.5 72 19-96 239-310 (495)
293 PRK10458 DNA cytosine methylas 93.8 0.31 6.7E-06 38.9 7.0 43 30-74 88-130 (467)
294 PF05050 Methyltransf_21: Meth 93.8 0.2 4.4E-06 33.3 5.2 39 35-73 1-42 (167)
295 PF02719 Polysacc_synt_2: Poly 93.5 0.41 8.9E-06 35.9 6.8 83 36-123 3-91 (293)
296 PLN02668 indole-3-acetate carb 93.3 0.35 7.6E-06 37.6 6.3 19 106-124 159-177 (386)
297 PF05206 TRM13: Methyltransfer 93.3 0.3 6.5E-06 36.0 5.7 38 27-64 16-57 (259)
298 COG0863 DNA modification methy 93.2 0.57 1.2E-05 34.5 7.2 56 18-76 211-266 (302)
299 KOG1562|consensus 93.2 0.4 8.6E-06 36.1 6.2 85 27-118 119-204 (337)
300 PF07942 N2227: N2227-like pro 93.1 0.43 9.4E-06 35.3 6.4 43 29-74 56-98 (270)
301 KOG2920|consensus 92.8 0.19 4E-06 37.4 4.0 50 16-67 102-152 (282)
302 KOG2912|consensus 92.7 0.54 1.2E-05 35.8 6.4 82 34-121 107-190 (419)
303 PRK09496 trkA potassium transp 92.6 2.1 4.5E-05 33.5 10.0 90 14-117 215-305 (453)
304 PF02086 MethyltransfD12: D12 92.6 0.19 4.1E-06 36.4 3.9 52 20-74 9-62 (260)
305 COG1568 Predicted methyltransf 92.5 0.48 1E-05 35.4 5.7 79 28-118 151-230 (354)
306 KOG1098|consensus 91.1 0.27 5.9E-06 40.4 3.5 39 26-64 41-79 (780)
307 COG1064 AdhP Zn-dependent alco 91.0 0.78 1.7E-05 35.1 5.7 45 27-73 164-209 (339)
308 KOG2782|consensus 90.8 0.4 8.6E-06 34.6 3.7 57 16-75 32-88 (303)
309 PRK07326 short chain dehydroge 90.6 4.1 8.8E-05 28.6 8.9 82 29-118 5-91 (237)
310 PRK07904 short chain dehydroge 90.4 3.1 6.7E-05 30.0 8.3 86 27-118 5-96 (253)
311 PRK06125 short chain dehydroge 90.3 4.8 0.0001 28.8 9.3 83 29-119 6-91 (259)
312 COG1063 Tdh Threonine dehydrog 90.3 2.9 6.4E-05 31.9 8.4 47 28-75 167-214 (350)
313 PRK07454 short chain dehydroge 90.2 4.7 0.0001 28.5 9.0 84 29-120 5-94 (241)
314 COG1086 Predicted nucleoside-d 90.2 3.2 6.8E-05 34.0 8.6 88 29-123 249-339 (588)
315 PRK08267 short chain dehydroge 90.1 3.3 7.2E-05 29.6 8.3 79 32-119 3-87 (260)
316 PRK01747 mnmC bifunctional tRN 89.9 0.58 1.3E-05 38.8 4.6 103 31-138 59-201 (662)
317 PRK07814 short chain dehydroge 89.6 5.8 0.00013 28.5 9.3 83 29-118 9-96 (263)
318 KOG2360|consensus 89.6 0.8 1.7E-05 35.6 4.7 81 28-118 212-293 (413)
319 TIGR01963 PHB_DH 3-hydroxybuty 89.6 5.5 0.00012 28.2 9.0 80 31-118 2-87 (255)
320 PRK08213 gluconate 5-dehydroge 89.4 6.1 0.00013 28.2 9.2 84 28-119 10-99 (259)
321 PF01234 NNMT_PNMT_TEMT: NNMT/ 89.1 0.87 1.9E-05 33.5 4.5 46 28-76 55-101 (256)
322 PRK05599 hypothetical protein; 89.0 6 0.00013 28.3 8.9 81 32-119 2-87 (246)
323 PRK06949 short chain dehydroge 89.0 6.5 0.00014 28.0 9.3 84 28-118 7-95 (258)
324 PRK07523 gluconate 5-dehydroge 88.9 6.7 0.00014 28.0 9.2 84 29-119 9-97 (255)
325 PRK07774 short chain dehydroge 88.7 6.7 0.00014 27.7 9.1 84 29-119 5-93 (250)
326 KOG0821|consensus 88.7 0.9 1.9E-05 33.0 4.2 59 29-95 50-108 (326)
327 COG0569 TrkA K+ transport syst 88.7 3.5 7.5E-05 29.6 7.3 72 31-116 1-73 (225)
328 KOG3924|consensus 88.5 1.8 3.9E-05 33.8 6.0 88 27-118 190-281 (419)
329 KOG2793|consensus 88.5 1.1 2.3E-05 32.9 4.6 42 29-73 86-127 (248)
330 TIGR03589 PseB UDP-N-acetylglu 88.5 3.8 8.3E-05 30.7 7.8 80 29-120 3-85 (324)
331 PRK08339 short chain dehydroge 88.4 6.8 0.00015 28.3 8.9 84 29-118 7-94 (263)
332 COG3510 CmcI Cephalosporin hyd 88.3 1.9 4.2E-05 30.6 5.6 74 11-96 53-129 (237)
333 PRK10669 putative cation:proto 88.2 1.8 3.8E-05 35.3 6.2 64 38-115 423-487 (558)
334 PRK08340 glucose-1-dehydrogena 88.1 7.4 0.00016 27.9 8.9 80 31-118 1-85 (259)
335 PF06460 NSP13: Coronavirus NS 88.0 3.2 7E-05 30.8 6.7 63 2-64 24-100 (299)
336 PRK06940 short chain dehydroge 88.0 6.7 0.00014 28.6 8.7 80 32-119 4-86 (275)
337 TIGR02622 CDP_4_6_dhtase CDP-g 87.9 4.4 9.5E-05 30.6 7.9 81 29-118 3-84 (349)
338 PF10237 N6-adenineMlase: Prob 87.8 5.8 0.00013 27.1 7.6 94 7-119 3-96 (162)
339 PRK07666 fabG 3-ketoacyl-(acyl 87.4 8.1 0.00017 27.2 9.4 83 30-119 7-94 (239)
340 PF03686 UPF0146: Uncharacteri 87.2 2.3 4.9E-05 27.9 5.1 34 29-65 13-47 (127)
341 PRK05854 short chain dehydroge 87.2 10 0.00023 28.2 9.8 85 29-119 13-103 (313)
342 PRK07890 short chain dehydroge 87.1 8.7 0.00019 27.3 9.6 84 28-118 3-91 (258)
343 PRK07533 enoyl-(acyl carrier p 87.0 8.3 0.00018 27.7 8.6 84 29-119 9-98 (258)
344 PRK08217 fabG 3-ketoacyl-(acyl 87.0 8.6 0.00019 27.1 8.7 83 29-118 4-91 (253)
345 PLN02989 cinnamyl-alcohol dehy 87.0 5.6 0.00012 29.6 7.9 83 28-119 3-87 (325)
346 PRK05867 short chain dehydroge 86.5 9.6 0.00021 27.1 9.2 84 29-119 8-96 (253)
347 PRK08251 short chain dehydroge 86.5 9.3 0.0002 27.0 9.4 83 31-118 3-90 (248)
348 COG4221 Short-chain alcohol de 86.5 10 0.00022 27.8 8.6 80 30-120 6-92 (246)
349 PRK08945 putative oxoacyl-(acy 86.4 9.5 0.00021 27.0 9.1 85 28-118 10-101 (247)
350 PRK06720 hypothetical protein; 86.4 8.3 0.00018 26.3 9.7 86 29-121 15-105 (169)
351 PRK06194 hypothetical protein; 86.3 8.7 0.00019 27.9 8.5 83 30-119 6-93 (287)
352 PRK11524 putative methyltransf 86.1 0.24 5.3E-06 36.7 0.2 32 85-120 7-38 (284)
353 COG3320 Putative dehydrogenase 86.1 3.9 8.5E-05 31.8 6.6 86 36-121 5-99 (382)
354 PF11899 DUF3419: Protein of u 86.0 3.4 7.5E-05 32.2 6.4 46 27-75 33-78 (380)
355 PRK07062 short chain dehydroge 86.0 11 0.00023 27.1 9.2 86 29-119 7-97 (265)
356 PRK05866 short chain dehydroge 86.0 12 0.00026 27.7 9.1 82 30-118 40-126 (293)
357 KOG3201|consensus 85.9 0.51 1.1E-05 32.5 1.6 48 28-76 28-76 (201)
358 PRK03562 glutathione-regulated 85.7 2.8 6E-05 34.8 6.1 71 31-117 401-472 (621)
359 PRK03659 glutathione-regulated 85.6 3.7 8E-05 33.9 6.8 70 32-117 402-472 (601)
360 PRK06172 short chain dehydroge 85.5 11 0.00024 26.8 9.1 84 29-119 6-94 (253)
361 PRK12384 sorbitol-6-phosphate 85.0 12 0.00025 26.7 8.7 83 31-118 3-90 (259)
362 PRK07063 short chain dehydroge 84.6 12 0.00026 26.7 9.2 85 29-119 6-96 (260)
363 cd08283 FDH_like_1 Glutathione 84.6 3.3 7.2E-05 31.8 5.8 46 27-73 182-228 (386)
364 PRK07067 sorbitol dehydrogenas 84.6 12 0.00027 26.6 8.6 79 30-118 6-89 (257)
365 PRK07984 enoyl-(acyl carrier p 84.4 13 0.00029 26.9 8.8 85 29-120 5-95 (262)
366 PRK06079 enoyl-(acyl carrier p 84.3 12 0.00025 26.9 8.3 82 29-119 6-93 (252)
367 KOG2798|consensus 84.2 1.4 3.1E-05 33.5 3.4 56 16-74 131-192 (369)
368 PF00106 adh_short: short chai 84.2 9.5 0.00021 25.1 7.4 82 32-120 2-91 (167)
369 PRK12829 short chain dehydroge 84.1 13 0.00027 26.5 8.4 82 28-118 9-95 (264)
370 COG1748 LYS9 Saccharopine dehy 84.0 6.2 0.00014 30.9 7.0 76 31-120 2-79 (389)
371 KOG1205|consensus 84.0 9.8 0.00021 28.5 7.8 84 29-121 11-103 (282)
372 PRK07074 short chain dehydroge 83.9 12 0.00027 26.6 8.2 78 31-118 3-86 (257)
373 PRK05872 short chain dehydroge 83.7 12 0.00027 27.5 8.4 83 29-119 8-95 (296)
374 PRK07231 fabG 3-ketoacyl-(acyl 83.6 13 0.00028 26.2 8.2 83 29-119 4-91 (251)
375 PRK08219 short chain dehydroge 83.4 11 0.00024 26.1 7.7 76 31-118 4-80 (227)
376 PRK07109 short chain dehydroge 83.4 16 0.00035 27.6 9.0 83 29-118 7-94 (334)
377 PLN02253 xanthoxin dehydrogena 83.3 13 0.00029 26.9 8.3 83 29-119 17-104 (280)
378 PRK08594 enoyl-(acyl carrier p 83.2 15 0.00032 26.5 8.7 83 29-119 6-97 (257)
379 PRK09424 pntA NAD(P) transhydr 83.2 7.3 0.00016 31.6 7.3 43 28-72 163-206 (509)
380 PRK06914 short chain dehydroge 83.1 15 0.00032 26.5 9.8 82 30-118 3-90 (280)
381 PRK07453 protochlorophyllide o 83.1 15 0.00033 27.3 8.7 84 29-119 5-93 (322)
382 PRK07097 gluconate 5-dehydroge 83.1 15 0.00032 26.4 8.6 84 29-119 9-97 (265)
383 PRK06124 gluconate 5-dehydroge 83.0 14 0.00031 26.2 9.3 84 28-118 9-97 (256)
384 KOG1201|consensus 82.9 16 0.00036 27.5 8.5 82 29-118 37-123 (300)
385 PLN02896 cinnamyl-alcohol dehy 82.7 19 0.0004 27.2 9.2 81 28-119 8-89 (353)
386 COG2933 Predicted SAM-dependen 82.6 4.1 8.9E-05 30.4 5.2 72 26-118 208-279 (358)
387 PRK07102 short chain dehydroge 82.3 15 0.00032 25.9 8.2 81 31-118 2-85 (243)
388 COG5379 BtaA S-adenosylmethion 82.2 4.6 9.9E-05 30.7 5.4 46 28-76 62-107 (414)
389 PRK06197 short chain dehydroge 82.1 18 0.00039 26.7 9.3 86 29-119 15-105 (306)
390 PRK08690 enoyl-(acyl carrier p 81.9 17 0.00036 26.2 8.5 85 29-120 5-95 (261)
391 PRK12939 short chain dehydroge 81.8 15 0.00033 25.8 8.6 83 29-118 6-93 (250)
392 PRK06200 2,3-dihydroxy-2,3-dih 81.7 17 0.00036 26.1 8.5 81 29-119 5-90 (263)
393 COG2961 ComJ Protein involved 81.6 17 0.00036 27.0 7.9 97 12-123 73-170 (279)
394 PF00107 ADH_zinc_N: Zinc-bind 81.4 11 0.00024 23.8 6.7 33 39-73 1-33 (130)
395 PRK07889 enoyl-(acyl carrier p 81.3 13 0.00028 26.7 7.5 82 29-119 6-95 (256)
396 PRK07024 short chain dehydroge 81.3 16 0.00034 26.1 8.0 80 31-118 3-87 (257)
397 PRK06139 short chain dehydroge 81.1 16 0.00035 27.6 8.2 83 29-118 6-93 (330)
398 PLN03209 translocon at the inn 81.0 19 0.00042 29.7 9.0 87 28-118 78-168 (576)
399 PRK08264 short chain dehydroge 80.8 13 0.00028 26.1 7.3 75 29-119 5-83 (238)
400 PRK09072 short chain dehydroge 80.8 18 0.00039 25.9 9.1 83 29-119 4-90 (263)
401 PRK05650 short chain dehydroge 80.5 19 0.00041 25.9 8.6 80 32-118 2-86 (270)
402 PRK08159 enoyl-(acyl carrier p 80.5 20 0.00043 26.1 8.8 84 29-119 9-98 (272)
403 KOG1253|consensus 80.5 1.2 2.6E-05 35.7 2.0 83 28-117 108-191 (525)
404 PRK05876 short chain dehydroge 80.4 20 0.00043 26.1 9.2 84 29-119 5-93 (275)
405 PRK06113 7-alpha-hydroxysteroi 80.2 19 0.0004 25.7 9.1 84 29-119 10-98 (255)
406 PRK07576 short chain dehydroge 80.0 20 0.00043 25.8 8.8 83 29-118 8-95 (264)
407 PRK09496 trkA potassium transp 80.0 19 0.00042 28.2 8.6 39 32-72 2-41 (453)
408 PRK07677 short chain dehydroge 79.9 19 0.00041 25.6 9.4 81 31-118 2-87 (252)
409 PF07279 DUF1442: Protein of u 79.9 20 0.00043 25.8 10.1 62 28-94 40-105 (218)
410 PRK07831 short chain dehydroge 79.8 20 0.00042 25.7 8.8 88 28-119 15-107 (262)
411 PF04378 RsmJ: Ribosomal RNA s 79.6 5.7 0.00012 29.1 5.1 92 16-121 46-137 (245)
412 PF12692 Methyltransf_17: S-ad 79.6 5.5 0.00012 27.0 4.6 45 17-62 15-60 (160)
413 PRK05565 fabG 3-ketoacyl-(acyl 79.6 18 0.0004 25.3 7.9 82 30-118 5-92 (247)
414 PRK06997 enoyl-(acyl carrier p 79.6 20 0.00044 25.8 8.1 84 29-119 5-94 (260)
415 PLN02780 ketoreductase/ oxidor 79.4 24 0.00052 26.5 9.3 86 29-119 52-142 (320)
416 PRK13699 putative methylase; P 79.3 0.6 1.3E-05 33.6 -0.0 28 88-119 3-30 (227)
417 PRK07478 short chain dehydroge 79.0 20 0.00044 25.4 9.2 84 29-119 5-93 (254)
418 PRK06196 oxidoreductase; Provi 79.0 19 0.00041 26.8 8.0 80 29-119 25-109 (315)
419 PRK08628 short chain dehydroge 79.0 20 0.00044 25.4 8.3 82 29-118 6-92 (258)
420 PRK13394 3-hydroxybutyrate deh 78.9 20 0.00044 25.4 8.6 84 29-119 6-94 (262)
421 PRK06482 short chain dehydroge 78.7 21 0.00046 25.7 8.0 78 31-118 3-85 (276)
422 PRK05717 oxidoreductase; Valid 78.6 21 0.00046 25.4 8.2 82 28-119 8-94 (255)
423 PLN02662 cinnamyl-alcohol dehy 78.6 14 0.0003 27.3 7.1 80 30-118 4-85 (322)
424 PRK07035 short chain dehydroge 78.5 21 0.00045 25.3 9.1 83 29-118 7-94 (252)
425 COG5459 Predicted rRNA methyla 78.5 1 2.2E-05 34.9 0.9 41 29-69 113-153 (484)
426 PLN02657 3,8-divinyl protochlo 78.5 15 0.00032 28.6 7.4 82 28-117 58-144 (390)
427 PRK09186 flagellin modificatio 78.0 22 0.00047 25.2 9.1 84 29-117 3-91 (256)
428 KOG0022|consensus 77.9 12 0.00026 28.8 6.4 47 27-73 190-236 (375)
429 PF05575 V_cholerae_RfbT: Vibr 77.7 3.8 8.2E-05 28.5 3.5 57 19-76 69-125 (286)
430 PRK05786 fabG 3-ketoacyl-(acyl 77.6 21 0.00046 24.9 9.1 82 29-118 4-90 (238)
431 PLN02427 UDP-apiose/xylose syn 77.6 11 0.00024 28.9 6.5 81 29-118 13-95 (386)
432 PRK08862 short chain dehydroge 77.5 23 0.00049 25.1 8.6 83 29-118 4-92 (227)
433 PRK06138 short chain dehydroge 77.3 22 0.00049 25.0 8.4 82 29-118 4-90 (252)
434 PRK08177 short chain dehydroge 77.3 17 0.00037 25.4 7.0 75 32-118 3-80 (225)
435 COG0300 DltE Short-chain dehyd 77.1 27 0.00059 25.9 9.3 88 29-122 5-97 (265)
436 cd05188 MDR Medium chain reduc 76.9 22 0.00047 25.1 7.5 44 27-72 132-176 (271)
437 TIGR03325 BphB_TodD cis-2,3-di 76.9 24 0.00052 25.3 7.8 80 29-118 4-88 (262)
438 PRK09242 tropinone reductase; 76.9 24 0.00052 25.1 9.6 86 29-119 8-98 (257)
439 PRK08277 D-mannonate oxidoredu 76.7 26 0.00055 25.3 9.1 84 29-119 9-97 (278)
440 PRK08589 short chain dehydroge 76.6 26 0.00056 25.3 9.3 83 29-119 5-92 (272)
441 PRK08643 acetoin reductase; Va 76.4 25 0.00053 25.0 9.1 81 31-118 3-88 (256)
442 PRK06181 short chain dehydroge 76.3 25 0.00055 25.0 8.1 81 31-118 2-87 (263)
443 PRK15181 Vi polysaccharide bio 76.2 19 0.00042 27.2 7.4 84 29-119 14-100 (348)
444 PF12242 Eno-Rase_NADH_b: NAD( 76.1 8.4 0.00018 23.0 4.2 48 16-63 23-73 (78)
445 PRK08324 short chain dehydroge 76.0 29 0.00063 29.1 8.9 82 29-118 421-507 (681)
446 PRK08703 short chain dehydroge 75.5 25 0.00055 24.7 8.3 83 29-118 5-96 (239)
447 cd08237 ribitol-5-phosphate_DH 75.4 9.5 0.0002 28.8 5.5 46 27-72 161-207 (341)
448 PRK07791 short chain dehydroge 75.3 30 0.00064 25.4 8.8 84 29-119 5-102 (286)
449 PRK08265 short chain dehydroge 75.2 28 0.0006 25.0 8.7 80 29-118 5-89 (261)
450 PF03435 Saccharop_dh: Sacchar 75.2 18 0.00038 27.9 7.0 73 33-118 1-76 (386)
451 PRK08415 enoyl-(acyl carrier p 74.7 30 0.00066 25.2 9.2 84 29-119 4-93 (274)
452 PRK07041 short chain dehydroge 74.6 26 0.00056 24.4 8.2 72 38-118 4-78 (230)
453 PRK08226 short chain dehydroge 74.4 28 0.00062 24.8 9.1 83 29-119 5-92 (263)
454 KOG1209|consensus 74.2 18 0.00038 26.4 6.2 35 29-63 6-41 (289)
455 TIGR03206 benzo_BadH 2-hydroxy 74.2 28 0.0006 24.5 9.1 82 30-118 3-89 (250)
456 PRK08085 gluconate 5-dehydroge 73.9 29 0.00063 24.6 9.1 83 29-118 8-95 (254)
457 COG4301 Uncharacterized conser 73.5 26 0.00057 26.1 7.0 65 28-96 77-144 (321)
458 cd08254 hydroxyacyl_CoA_DH 6-h 73.5 25 0.00054 25.9 7.4 44 27-72 163-207 (338)
459 PRK07424 bifunctional sterol d 73.2 33 0.00071 27.1 8.1 77 29-118 177-254 (406)
460 TIGR03201 dearomat_had 6-hydro 73.1 13 0.00028 28.1 5.8 44 27-72 164-208 (349)
461 PF03514 GRAS: GRAS domain fam 72.9 42 0.0009 26.1 8.5 48 29-76 110-167 (374)
462 PRK12826 3-ketoacyl-(acyl-carr 72.7 30 0.00065 24.2 8.6 84 29-119 5-93 (251)
463 PRK09291 short chain dehydroge 72.6 31 0.00067 24.4 8.7 79 31-118 3-82 (257)
464 PRK14106 murD UDP-N-acetylmura 72.5 32 0.00068 27.0 8.0 73 29-119 4-78 (450)
465 PRK06505 enoyl-(acyl carrier p 72.5 34 0.00074 24.8 9.0 84 29-119 6-95 (271)
466 PRK05653 fabG 3-ketoacyl-(acyl 72.1 30 0.00066 24.0 8.5 82 30-118 5-91 (246)
467 PRK06179 short chain dehydroge 71.9 24 0.00052 25.3 6.8 75 30-119 4-83 (270)
468 PRK07201 short chain dehydroge 71.7 45 0.00098 27.5 9.0 83 30-119 371-458 (657)
469 KOG2539|consensus 71.4 5 0.00011 32.1 3.2 87 31-126 202-291 (491)
470 PRK05855 short chain dehydroge 71.2 52 0.0011 26.3 9.2 83 30-119 315-402 (582)
471 PRK06603 enoyl-(acyl carrier p 70.9 36 0.00078 24.5 9.1 84 29-119 7-96 (260)
472 PRK12828 short chain dehydroge 70.9 32 0.00069 23.8 8.5 80 29-118 6-91 (239)
473 PRK08416 7-alpha-hydroxysteroi 70.7 36 0.00078 24.3 9.0 84 29-118 7-96 (260)
474 PRK10538 malonic semialdehyde 70.6 35 0.00076 24.2 8.1 77 32-118 2-83 (248)
475 PRK06182 short chain dehydroge 70.3 37 0.00081 24.4 8.3 77 30-119 3-84 (273)
476 PRK12823 benD 1,6-dihydroxycyc 70.3 36 0.00078 24.2 9.1 82 29-118 7-93 (260)
477 PRK13656 trans-2-enoyl-CoA red 70.0 53 0.0011 26.0 9.1 104 16-125 24-147 (398)
478 cd00401 AdoHcyase S-adenosyl-L 69.7 27 0.00058 27.7 6.9 44 27-72 199-243 (413)
479 PRK07792 fabG 3-ketoacyl-(acyl 69.7 43 0.00093 24.8 8.4 84 28-118 10-98 (306)
480 TIGR02356 adenyl_thiF thiazole 69.4 31 0.00067 24.2 6.7 33 29-63 20-54 (202)
481 cd08261 Zn_ADH7 Alcohol dehydr 69.2 44 0.00096 24.8 8.3 45 26-72 156-201 (337)
482 PF13561 adh_short_C2: Enoyl-( 69.2 29 0.00063 24.5 6.6 77 37-120 1-84 (241)
483 KOG1371|consensus 69.1 44 0.00095 25.8 7.6 76 31-118 3-86 (343)
484 PRK12748 3-ketoacyl-(acyl-carr 69.1 38 0.00083 24.0 9.0 83 29-118 4-104 (256)
485 PRK08303 short chain dehydroge 68.8 46 0.00099 24.8 8.6 82 29-117 7-103 (305)
486 PRK10675 UDP-galactose-4-epime 68.7 43 0.00092 24.9 7.7 80 32-118 2-82 (338)
487 TIGR02632 RhaD_aldol-ADH rhamn 68.5 68 0.0015 27.0 9.4 85 30-119 414-503 (676)
488 PRK09880 L-idonate 5-dehydroge 68.4 17 0.00038 27.3 5.6 44 28-72 168-212 (343)
489 PLN02240 UDP-glucose 4-epimera 68.2 48 0.001 24.8 8.0 84 30-118 5-90 (352)
490 PRK05993 short chain dehydroge 68.2 43 0.00093 24.2 7.8 76 30-118 4-85 (277)
491 PRK07370 enoyl-(acyl carrier p 67.4 43 0.00094 24.0 8.1 85 29-119 5-97 (258)
492 PRK12481 2-deoxy-D-gluconate 3 67.1 43 0.00093 23.8 8.3 81 29-118 7-92 (251)
493 PRK05875 short chain dehydroge 67.1 44 0.00096 24.0 9.1 85 29-118 6-95 (276)
494 PRK12429 3-hydroxybutyrate deh 67.0 42 0.0009 23.6 8.7 82 30-118 4-90 (258)
495 TIGR02822 adh_fam_2 zinc-bindi 66.9 21 0.00046 26.7 5.8 44 27-72 163-207 (329)
496 PF07993 NAD_binding_4: Male s 66.8 17 0.00038 26.0 5.1 81 38-118 3-96 (249)
497 PRK07825 short chain dehydroge 66.4 46 0.00099 23.9 8.6 78 30-118 5-87 (273)
498 PLN02819 lysine-ketoglutarate 65.5 33 0.00072 30.5 7.2 76 30-119 569-658 (1042)
499 PLN02986 cinnamyl-alcohol dehy 65.1 54 0.0012 24.3 7.6 82 29-119 4-87 (322)
500 PRK12746 short chain dehydroge 65.0 46 0.001 23.5 8.0 82 30-118 6-99 (254)
No 1
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.72 E-value=4.9e-17 Score=115.54 Aligned_cols=118 Identities=23% Similarity=0.367 Sum_probs=96.7
Q ss_pred hhhcccccChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccc
Q psy5757 4 VKIGAAIGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLL 82 (139)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~ 82 (139)
++.|+.++.|..+..+++.+. +.++.+|||+|||+|+.+..+++..++.++++++|+++++++.+++++.. +.
T Consensus 53 ~~~g~~~~~p~~~~~~~~~l~--~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~---- 126 (212)
T PRK13942 53 IGYGQTISAIHMVAIMCELLD--LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY---- 126 (212)
T ss_pred CCCCCEeCcHHHHHHHHHHcC--CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC----
Confidence 356778899999999999886 68899999999999999999999886667999999999999999999987 44
Q ss_pred cCCcEEEEEccchhhhHHHhhhccCCceeEEecCccccccccceeeeeeeccCCCC
Q psy5757 83 TDGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAESWMNIPVCINYTATMPEGS 138 (139)
Q Consensus 83 ~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p~~~~~~~~~p~g~ 138 (139)
.+++++++|+.+.+. +...||+|++....+.++. ..+..++|+|.
T Consensus 127 --~~v~~~~gd~~~~~~------~~~~fD~I~~~~~~~~~~~---~l~~~LkpgG~ 171 (212)
T PRK13942 127 --DNVEVIVGDGTLGYE------ENAPYDRIYVTAAGPDIPK---PLIEQLKDGGI 171 (212)
T ss_pred --CCeEEEECCcccCCC------cCCCcCEEEECCCcccchH---HHHHhhCCCcE
Confidence 789999999765332 2357999999887666543 34556777774
No 2
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.71 E-value=6.7e-17 Score=114.28 Aligned_cols=118 Identities=24% Similarity=0.276 Sum_probs=95.0
Q ss_pred hhcccccChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hcccccc
Q psy5757 5 KIGAAIGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLT 83 (139)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~ 83 (139)
..++.++.+..+.++++.+. ..++.+|||+|||+|+.+..+++..++.++++++|+++++++.|++++.. +.
T Consensus 50 ~~~~~~~~p~~~~~~~~~l~--~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~----- 122 (205)
T PRK13944 50 FAGATISAPHMVAMMCELIE--PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGY----- 122 (205)
T ss_pred CCCCEechHHHHHHHHHhcC--CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-----
Confidence 45678888888888888885 57889999999999999999999876567999999999999999999887 43
Q ss_pred CCcEEEEEccchhhhHHHhhhccCCceeEEecCccccccccceeeeeeeccCCCC
Q psy5757 84 DGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAESWMNIPVCINYTATMPEGS 138 (139)
Q Consensus 84 ~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p~~~~~~~~~p~g~ 138 (139)
..+++++.+|+.+.+. ...+||+|+++.+.++++. ..++.++|+|.
T Consensus 123 ~~~v~~~~~d~~~~~~------~~~~fD~Ii~~~~~~~~~~---~l~~~L~~gG~ 168 (205)
T PRK13944 123 WGVVEVYHGDGKRGLE------KHAPFDAIIVTAAASTIPS---ALVRQLKDGGV 168 (205)
T ss_pred CCcEEEEECCcccCCc------cCCCccEEEEccCcchhhH---HHHHhcCcCcE
Confidence 2468999999765432 1357999999999887764 34566777775
No 3
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=7.8e-17 Score=112.88 Aligned_cols=105 Identities=23% Similarity=0.348 Sum_probs=92.7
Q ss_pred hhhcccccChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhcccccc
Q psy5757 4 VKIGAAIGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLT 83 (139)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~ 83 (139)
+..|++++.|+++.++++.+. ++++++|||||||+|+.+.-|++... +|+++|..++..+.|++++.. ++
T Consensus 49 i~~gqtis~P~~vA~m~~~L~--~~~g~~VLEIGtGsGY~aAvla~l~~---~V~siEr~~~L~~~A~~~L~~-----lg 118 (209)
T COG2518 49 IGCGQTISAPHMVARMLQLLE--LKPGDRVLEIGTGSGYQAAVLARLVG---RVVSIERIEELAEQARRNLET-----LG 118 (209)
T ss_pred CCCCceecCcHHHHHHHHHhC--CCCCCeEEEECCCchHHHHHHHHHhC---eEEEEEEcHHHHHHHHHHHHH-----cC
Confidence 467999999999999999997 79999999999999999999999987 999999999999999999998 33
Q ss_pred CCcEEEEEccchhhhHHHhhhccCCceeEEecCcccccccc
Q psy5757 84 DGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAESWMNI 124 (139)
Q Consensus 84 ~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~ 124 (139)
..|++++++|...+++ +...||.|+.....-.++.
T Consensus 119 ~~nV~v~~gDG~~G~~------~~aPyD~I~Vtaaa~~vP~ 153 (209)
T COG2518 119 YENVTVRHGDGSKGWP------EEAPYDRIIVTAAAPEVPE 153 (209)
T ss_pred CCceEEEECCcccCCC------CCCCcCEEEEeeccCCCCH
Confidence 4889999999998876 2356899988887555554
No 4
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.71 E-value=3.9e-17 Score=115.58 Aligned_cols=106 Identities=23% Similarity=0.379 Sum_probs=85.6
Q ss_pred hhhcccccChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccc
Q psy5757 4 VKIGAAIGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLL 82 (139)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~ 82 (139)
++.++++++|+++.++++.+. ++++++|||+|||+|+.+..++...++.+.|+++|.++...+.|++++.. +.
T Consensus 49 i~~~~~is~P~~~a~~l~~L~--l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~---- 122 (209)
T PF01135_consen 49 IGCGQTISAPSMVARMLEALD--LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGI---- 122 (209)
T ss_dssp EETTEEE--HHHHHHHHHHTT--C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTT----
T ss_pred ecceeechHHHHHHHHHHHHh--cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhcc----
Confidence 356789999999999999997 89999999999999999999999988777899999999999999999998 54
Q ss_pred cCCcEEEEEccchhhhHHHhhhccCCceeEEecCccccccc
Q psy5757 83 TDGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAESWMN 123 (139)
Q Consensus 83 ~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~ 123 (139)
.|++++++|...+++. ...||.|+++.....++
T Consensus 123 --~nv~~~~gdg~~g~~~------~apfD~I~v~~a~~~ip 155 (209)
T PF01135_consen 123 --DNVEVVVGDGSEGWPE------EAPFDRIIVTAAVPEIP 155 (209)
T ss_dssp --HSEEEEES-GGGTTGG------G-SEEEEEESSBBSS--
T ss_pred --CceeEEEcchhhcccc------CCCcCEEEEeeccchHH
Confidence 7999999998776652 35699999988765444
No 5
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.70 E-value=4.9e-17 Score=116.65 Aligned_cols=98 Identities=15% Similarity=0.264 Sum_probs=86.2
Q ss_pred CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757 28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMK 106 (139)
Q Consensus 28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 106 (139)
.+|.+|||+|||||..+..+++..+ .++++++|+|+.|++.++++... +. .+++++++|+.+ + +.+
T Consensus 50 ~~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~------~~i~fv~~dAe~----L--Pf~ 116 (238)
T COG2226 50 KPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGV------QNVEFVVGDAEN----L--PFP 116 (238)
T ss_pred CCCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCc------cceEEEEechhh----C--CCC
Confidence 4789999999999999999999997 88999999999999999999988 54 559999999544 3 345
Q ss_pred CCceeEEecCccccccccce---eeeeeeccCCCC
Q psy5757 107 FDRYDFLPHAPAESWMNIPV---CINYTATMPEGS 138 (139)
Q Consensus 107 ~~~~D~vi~~~~~~~~~~p~---~~~~~~~~p~g~ 138 (139)
+.+||++.+...++.++++. ...||+++|+|.
T Consensus 117 D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~ 151 (238)
T COG2226 117 DNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGR 151 (238)
T ss_pred CCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeE
Confidence 78899999999999999864 556999999995
No 6
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.70 E-value=1.4e-16 Score=113.28 Aligned_cols=117 Identities=21% Similarity=0.334 Sum_probs=94.1
Q ss_pred hhcccccChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hcccccc
Q psy5757 5 KIGAAIGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLT 83 (139)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~ 83 (139)
+.++.++.+..+..+++.+. ++++.+|||+|||+|+.+..+++..++.++|+++|+++++++.|++++.. +.
T Consensus 55 ~~~~~~~~p~~~~~~~~~l~--~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~----- 127 (215)
T TIGR00080 55 GYGQTISAPHMVAMMTELLE--LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL----- 127 (215)
T ss_pred CCCCEechHHHHHHHHHHhC--CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC-----
Confidence 34667788888899999886 68889999999999999999999886667899999999999999999988 44
Q ss_pred CCcEEEEEccchhhhHHHhhhccCCceeEEecCccccccccceeeeeeeccCCCC
Q psy5757 84 DGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAESWMNIPVCINYTATMPEGS 138 (139)
Q Consensus 84 ~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p~~~~~~~~~p~g~ 138 (139)
.+++++++|+.+.+. ...+||+|+++.+.+.+.. ..+..++|+|.
T Consensus 128 -~~v~~~~~d~~~~~~------~~~~fD~Ii~~~~~~~~~~---~~~~~L~~gG~ 172 (215)
T TIGR00080 128 -DNVIVIVGDGTQGWE------PLAPYDRIYVTAAGPKIPE---ALIDQLKEGGI 172 (215)
T ss_pred -CCeEEEECCcccCCc------ccCCCCEEEEcCCcccccH---HHHHhcCcCcE
Confidence 789999999765322 2357999999887665543 24566777774
No 7
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.69 E-value=3.5e-17 Score=117.74 Aligned_cols=100 Identities=17% Similarity=0.289 Sum_probs=73.0
Q ss_pred CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757 27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMM 105 (139)
Q Consensus 27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 105 (139)
..++.+|||+|||||..+..+++..++.++|+++|+|+.|++.|+++.+. +. .+++++++|+.+ + +.
T Consensus 45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~------~~i~~v~~da~~----l--p~ 112 (233)
T PF01209_consen 45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGL------QNIEFVQGDAED----L--PF 112 (233)
T ss_dssp --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--------SEEEEE-BTTB--------S
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCC------CCeeEEEcCHHH----h--cC
Confidence 47788999999999999999999987788999999999999999999987 54 699999999655 2 23
Q ss_pred cCCceeEEecCccccccccce---eeeeeeccCCCC
Q psy5757 106 KFDRYDFLPHAPAESWMNIPV---CINYTATMPEGS 138 (139)
Q Consensus 106 ~~~~~D~vi~~~~~~~~~~p~---~~~~~~~~p~g~ 138 (139)
++++||+|++...+|.++++. ...+++++|+|.
T Consensus 113 ~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~ 148 (233)
T PF01209_consen 113 PDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGR 148 (233)
T ss_dssp -TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEE
T ss_pred CCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeE
Confidence 468899999999999998864 444899999885
No 8
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.67 E-value=1.4e-16 Score=107.55 Aligned_cols=99 Identities=16% Similarity=0.330 Sum_probs=78.5
Q ss_pred CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757 28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMK 106 (139)
Q Consensus 28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 106 (139)
+++.+|||+|||+|..+..+++...+.++++|+|+++++++.|+++++. +. ++++++++|+.+ +++ ..+
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~------~ni~~~~~d~~~-l~~---~~~ 71 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGL------DNIEFIQGDIED-LPQ---ELE 71 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTS------TTEEEEESBTTC-GCG---CSS
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccc------cccceEEeehhc-ccc---ccC
Confidence 4678999999999999999997655677999999999999999999887 54 699999999766 432 111
Q ss_pred CCceeEEecCccccccccce---eeeeeeccCCC
Q psy5757 107 FDRYDFLPHAPAESWMNIPV---CINYTATMPEG 137 (139)
Q Consensus 107 ~~~~D~vi~~~~~~~~~~p~---~~~~~~~~p~g 137 (139)
++||+|+++.++|++.++. ....+.++|+|
T Consensus 72 -~~~D~I~~~~~l~~~~~~~~~l~~~~~~lk~~G 104 (152)
T PF13847_consen 72 -EKFDIIISNGVLHHFPDPEKVLKNIIRLLKPGG 104 (152)
T ss_dssp -TTEEEEEEESTGGGTSHHHHHHHHHHHHEEEEE
T ss_pred -CCeeEEEEcCchhhccCHHHHHHHHHHHcCCCc
Confidence 6899999999999999874 23355555554
No 9
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.66 E-value=6.3e-16 Score=113.01 Aligned_cols=103 Identities=16% Similarity=0.186 Sum_probs=82.5
Q ss_pred CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757 27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMM 105 (139)
Q Consensus 27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 105 (139)
+.++.+|||+|||+|..+..+++..++.++++|+|+|++|++.|+++... .. ...++++++++|+.+ + +.
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~---~~~~~i~~~~~d~~~----l--p~ 141 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAK---SCYKNIEWIEGDATD----L--PF 141 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhh---ccCCCeEEEEccccc----C--CC
Confidence 46788999999999999999999876667999999999999999877542 10 013689999999654 2 23
Q ss_pred cCCceeEEecCccccccccce---eeeeeeccCCCC
Q psy5757 106 KFDRYDFLPHAPAESWMNIPV---CINYTATMPEGS 138 (139)
Q Consensus 106 ~~~~~D~vi~~~~~~~~~~p~---~~~~~~~~p~g~ 138 (139)
+.++||+|+++.++|++.+|. ...++.++|+|.
T Consensus 142 ~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~ 177 (261)
T PLN02233 142 DDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSR 177 (261)
T ss_pred CCCCEeEEEEecccccCCCHHHHHHHHHHHcCcCcE
Confidence 456899999999999999885 445889999986
No 10
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.66 E-value=3.6e-16 Score=99.94 Aligned_cols=98 Identities=16% Similarity=0.310 Sum_probs=74.9
Q ss_pred CCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhccC
Q psy5757 29 ENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMKF 107 (139)
Q Consensus 29 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 107 (139)
|+.+|||+|||+|..+..+++.. +.++++++|+|+++++.+++++.. .. .++++++++|+ . .. ....
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~-----~~~i~~~~~d~-~-~~----~~~~ 68 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLF-PGARVVGVDISPEMLEIARERAAEEGL-----SDRITFVQGDA-E-FD----PDFL 68 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHTTT-----TTTEEEEESCC-H-GG----TTTS
T ss_pred CCCEEEEEcCcCCHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHhcCC-----CCCeEEEECcc-c-cC----cccC
Confidence 57899999999999999999965 466999999999999999999954 33 48999999996 2 11 1123
Q ss_pred CceeEEecCc-cccccccc------eeeeeeeccCCCC
Q psy5757 108 DRYDFLPHAP-AESWMNIP------VCINYTATMPEGS 138 (139)
Q Consensus 108 ~~~D~vi~~~-~~~~~~~p------~~~~~~~~~p~g~ 138 (139)
++||+|++.. .++++... .......+.|+|.
T Consensus 69 ~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~ 106 (112)
T PF12847_consen 69 EPFDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGGR 106 (112)
T ss_dssp SCEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEE
T ss_pred CCCCEEEECCCccccccchhHHHHHHHHHHHhcCCCcE
Confidence 5699999999 55644432 4444666667664
No 11
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.64 E-value=1.4e-15 Score=108.92 Aligned_cols=100 Identities=13% Similarity=0.275 Sum_probs=82.4
Q ss_pred CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757 27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMM 105 (139)
Q Consensus 27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 105 (139)
++++.+|||+|||+|..+..+++..++.++++++|+++++++.+++++.. +. ++++++++|..+ + ..
T Consensus 43 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~------~~v~~~~~d~~~-~-----~~ 110 (231)
T TIGR02752 43 VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL------HNVELVHGNAME-L-----PF 110 (231)
T ss_pred CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC------CceEEEEechhc-C-----CC
Confidence 56788999999999999999999876677999999999999999999876 43 689999999644 1 12
Q ss_pred cCCceeEEecCccccccccceee---eeeeccCCCC
Q psy5757 106 KFDRYDFLPHAPAESWMNIPVCI---NYTATMPEGS 138 (139)
Q Consensus 106 ~~~~~D~vi~~~~~~~~~~p~~~---~~~~~~p~g~ 138 (139)
+.++||+|+++.++|+..++... .++.++|+|.
T Consensus 111 ~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~ 146 (231)
T TIGR02752 111 DDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGK 146 (231)
T ss_pred CCCCccEEEEecccccCCCHHHHHHHHHHHcCcCeE
Confidence 35689999999999998887543 3677788874
No 12
>PLN02244 tocopherol O-methyltransferase
Probab=99.61 E-value=4e-15 Score=112.49 Aligned_cols=99 Identities=12% Similarity=0.159 Sum_probs=80.9
Q ss_pred CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757 28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMK 106 (139)
Q Consensus 28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 106 (139)
.++.+|||+|||+|..+..+++..+ ++++|+|+++.+++.++++... +. .++++++++|+.+ + +.+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g--~~v~gvD~s~~~i~~a~~~~~~~g~-----~~~v~~~~~D~~~-~-----~~~ 183 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYG--ANVKGITLSPVQAARANALAAAQGL-----SDKVSFQVADALN-Q-----PFE 183 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHHhcCC-----CCceEEEEcCccc-C-----CCC
Confidence 5678999999999999999999863 4999999999999999998876 44 3579999999654 1 224
Q ss_pred CCceeEEecCcccccccccee---eeeeeccCCCCC
Q psy5757 107 FDRYDFLPHAPAESWMNIPVC---INYTATMPEGSY 139 (139)
Q Consensus 107 ~~~~D~vi~~~~~~~~~~p~~---~~~~~~~p~g~~ 139 (139)
.++||+|++..++||+.++.. ..++.++|+|.+
T Consensus 184 ~~~FD~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~l 219 (340)
T PLN02244 184 DGQFDLVWSMESGEHMPDKRKFVQELARVAAPGGRI 219 (340)
T ss_pred CCCccEEEECCchhccCCHHHHHHHHHHHcCCCcEE
Confidence 578999999999999987643 347888998853
No 13
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.60 E-value=9.7e-16 Score=94.67 Aligned_cols=89 Identities=16% Similarity=0.278 Sum_probs=70.2
Q ss_pred EEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccCCceeEE
Q psy5757 34 LEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKFDRYDFL 113 (139)
Q Consensus 34 LdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~v 113 (139)
||+|||+|..+..+++. +..+++++|+++.+++.++++... .++.++++|+.+ + +.+.++||+|
T Consensus 1 LdiG~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~--------~~~~~~~~d~~~----l--~~~~~sfD~v 64 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--GGASVTGIDISEEMLEQARKRLKN--------EGVSFRQGDAED----L--PFPDNSFDVV 64 (95)
T ss_dssp EEET-TTSHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTTT--------STEEEEESBTTS----S--SS-TT-EEEE
T ss_pred CEecCcCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhcccc--------cCchheeehHHh----C--cccccccccc
Confidence 79999999999999999 234999999999999999998866 456688888554 2 3446789999
Q ss_pred ecCccccccccce---eeeeeeccCCCC
Q psy5757 114 PHAPAESWMNIPV---CINYTATMPEGS 138 (139)
Q Consensus 114 i~~~~~~~~~~p~---~~~~~~~~p~g~ 138 (139)
+++.++||+.++. ...++.++|+|.
T Consensus 65 ~~~~~~~~~~~~~~~l~e~~rvLk~gG~ 92 (95)
T PF08241_consen 65 FSNSVLHHLEDPEAALREIYRVLKPGGR 92 (95)
T ss_dssp EEESHGGGSSHHHHHHHHHHHHEEEEEE
T ss_pred ccccceeeccCHHHHHHHHHHHcCcCeE
Confidence 9999999997664 334888888885
No 14
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.60 E-value=3.1e-15 Score=108.90 Aligned_cols=100 Identities=13% Similarity=0.182 Sum_probs=78.3
Q ss_pred HHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchh
Q psy5757 17 LTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIK 96 (139)
Q Consensus 17 ~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~ 96 (139)
..+++.+. ..++.+|||+|||+|.++..+++.. +.++++|+|+|+.+++.|++ .+++++++|+.+
T Consensus 19 ~~ll~~l~--~~~~~~vLDlGcG~G~~~~~l~~~~-p~~~v~gvD~s~~~~~~a~~------------~~~~~~~~d~~~ 83 (255)
T PRK14103 19 YDLLARVG--AERARRVVDLGCGPGNLTRYLARRW-PGAVIEALDSSPEMVAAARE------------RGVDARTGDVRD 83 (255)
T ss_pred HHHHHhCC--CCCCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHh------------cCCcEEEcChhh
Confidence 34445543 4677899999999999999999987 46699999999999998854 246788888543
Q ss_pred hhHHHhhhccCCceeEEecCcccccccccee---eeeeeccCCCC
Q psy5757 97 RIETVELMMKFDRYDFLPHAPAESWMNIPVC---INYTATMPEGS 138 (139)
Q Consensus 97 ~~~~~~~~~~~~~~D~vi~~~~~~~~~~p~~---~~~~~~~p~g~ 138 (139)
+ . +.++||+|+++.++||++++.. ..++.++|+|.
T Consensus 84 ----~--~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~ 121 (255)
T PRK14103 84 ----W--K-PKPDTDVVVSNAALQWVPEHADLLVRWVDELAPGSW 121 (255)
T ss_pred ----C--C-CCCCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcE
Confidence 2 1 2457999999999999988653 34788999985
No 15
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.60 E-value=4.9e-15 Score=107.45 Aligned_cols=101 Identities=11% Similarity=0.232 Sum_probs=81.0
Q ss_pred cCCCCCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhh
Q psy5757 26 HLNENSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVEL 103 (139)
Q Consensus 26 ~~~~~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~ 103 (139)
.+.++.+|||+|||+|..+..+++.. .+.++++++|+|+.+++.|++++.. +. ..+++++++|+.+ +
T Consensus 53 ~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~-----~~~v~~~~~d~~~----~-- 121 (247)
T PRK15451 53 FVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKA-----PTPVDVIEGDIRD----I-- 121 (247)
T ss_pred hCCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC-----CCCeEEEeCChhh----C--
Confidence 35678899999999999999998854 3567999999999999999999876 43 3579999999543 1
Q ss_pred hccCCceeEEecCccccccccc-----eeeeeeeccCCCCC
Q psy5757 104 MMKFDRYDFLPHAPAESWMNIP-----VCINYTATMPEGSY 139 (139)
Q Consensus 104 ~~~~~~~D~vi~~~~~~~~~~p-----~~~~~~~~~p~g~~ 139 (139)
+...+|+|+++.++|++..+ ....++.++|+|.+
T Consensus 122 --~~~~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l 160 (247)
T PRK15451 122 --AIENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGAL 160 (247)
T ss_pred --CCCCCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEE
Confidence 23458999999999998643 35558899999853
No 16
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.59 E-value=6.2e-15 Score=107.33 Aligned_cols=98 Identities=18% Similarity=0.276 Sum_probs=80.3
Q ss_pred CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757 28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMK 106 (139)
Q Consensus 28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 106 (139)
.++.+|||+|||+|..+..+++... +|+++|+++++++.|+++... +. .++++++++|+.+ +. ...
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~g~---~v~~vD~s~~~l~~a~~~~~~~g~-----~~~v~~~~~d~~~-l~----~~~ 109 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAELGH---QVILCDLSAEMIQRAKQAAEAKGV-----SDNMQFIHCAAQD-IA----QHL 109 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCC-----ccceEEEEcCHHH-Hh----hhc
Confidence 4567999999999999999999753 999999999999999999877 54 3678999999654 21 113
Q ss_pred CCceeEEecCcccccccccee---eeeeeccCCCC
Q psy5757 107 FDRYDFLPHAPAESWMNIPVC---INYTATMPEGS 138 (139)
Q Consensus 107 ~~~~D~vi~~~~~~~~~~p~~---~~~~~~~p~g~ 138 (139)
.++||+|+++.++||+.+|.. ..++.++|+|.
T Consensus 110 ~~~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~ 144 (255)
T PRK11036 110 ETPVDLILFHAVLEWVADPKSVLQTLWSVLRPGGA 144 (255)
T ss_pred CCCCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeE
Confidence 467999999999999988753 44888999985
No 17
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.59 E-value=1.1e-14 Score=103.38 Aligned_cols=113 Identities=18% Similarity=0.256 Sum_probs=89.4
Q ss_pred hcccccChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccC
Q psy5757 6 IGAAIGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTD 84 (139)
Q Consensus 6 ~~~~~~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~ 84 (139)
.++.++++....+++..+. .+++.+|||+|||+|+.+..+++... +++++|+++++++.+++++.. +.
T Consensus 57 ~~~~~~~p~~~~~l~~~l~--~~~~~~VLeiG~GsG~~t~~la~~~~---~v~~vd~~~~~~~~a~~~~~~~~~------ 125 (212)
T PRK00312 57 CGQTISQPYMVARMTELLE--LKPGDRVLEIGTGSGYQAAVLAHLVR---RVFSVERIKTLQWEAKRRLKQLGL------ 125 (212)
T ss_pred CCCeeCcHHHHHHHHHhcC--CCCCCEEEEECCCccHHHHHHHHHhC---EEEEEeCCHHHHHHHHHHHHHCCC------
Confidence 4566788888888888775 67889999999999999998888764 899999999999999999987 44
Q ss_pred CcEEEEEccchhhhHHHhhhccCCceeEEecCccccccccceeeeeeeccCCCC
Q psy5757 85 GHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAESWMNIPVCINYTATMPEGS 138 (139)
Q Consensus 85 ~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p~~~~~~~~~p~g~ 138 (139)
.+++++.+|..+.+. +.++||+|+++.+.+++.. ..+..+.|+|.
T Consensus 126 ~~v~~~~~d~~~~~~------~~~~fD~I~~~~~~~~~~~---~l~~~L~~gG~ 170 (212)
T PRK00312 126 HNVSVRHGDGWKGWP------AYAPFDRILVTAAAPEIPR---ALLEQLKEGGI 170 (212)
T ss_pred CceEEEECCcccCCC------cCCCcCEEEEccCchhhhH---HHHHhcCCCcE
Confidence 679999999654322 2357999999988777643 23556666664
No 18
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.58 E-value=3.9e-15 Score=103.39 Aligned_cols=96 Identities=14% Similarity=0.173 Sum_probs=78.9
Q ss_pred CCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhccC
Q psy5757 29 ENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMKF 107 (139)
Q Consensus 29 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 107 (139)
++.+|||+|||+|..+..++... +.++|+++|.++.+++.++++... +. .+++++++|+.+ +. ..
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~-~~~~V~~iD~s~~~~~~a~~~~~~~~~------~~i~~i~~d~~~-~~------~~ 107 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIAR-PELKLTLLESNHKKVAFLREVKAELGL------NNVEIVNGRAED-FQ------HE 107 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHhCC------CCeEEEecchhh-cc------cc
Confidence 47899999999999999998766 467999999999999999998877 43 679999999654 21 24
Q ss_pred CceeEEecCccccccccceeeeeeeccCCCCC
Q psy5757 108 DRYDFLPHAPAESWMNIPVCINYTATMPEGSY 139 (139)
Q Consensus 108 ~~~D~vi~~~~~~~~~~p~~~~~~~~~p~g~~ 139 (139)
++||+|+++. ++.+.+.....++.++|+|.+
T Consensus 108 ~~fD~I~s~~-~~~~~~~~~~~~~~LkpgG~l 138 (181)
T TIGR00138 108 EQFDVITSRA-LASLNVLLELTLNLLKVGGYF 138 (181)
T ss_pred CCccEEEehh-hhCHHHHHHHHHHhcCCCCEE
Confidence 5799999988 777777777778888999853
No 19
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.58 E-value=7.2e-15 Score=102.50 Aligned_cols=98 Identities=13% Similarity=0.157 Sum_probs=77.1
Q ss_pred cCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhh
Q psy5757 26 HLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELM 104 (139)
Q Consensus 26 ~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 104 (139)
.++++.+|||+|||+|..+..+++.. +.++++++|+++.+++.|+++... +. .+++++++|+.+ +.
T Consensus 42 ~l~~g~~VLDiGcGtG~~al~la~~~-~~~~V~giD~s~~~l~~A~~~~~~~~l------~~i~~~~~d~~~-~~----- 108 (187)
T PRK00107 42 YLPGGERVLDVGSGAGFPGIPLAIAR-PELKVTLVDSLGKKIAFLREVAAELGL------KNVTVVHGRAEE-FG----- 108 (187)
T ss_pred hcCCCCeEEEEcCCCCHHHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHcCC------CCEEEEeccHhh-CC-----
Confidence 34668999999999999999999876 467999999999999999999988 54 569999999654 21
Q ss_pred ccCCceeEEecCccccccccceeeeeeeccCCCC
Q psy5757 105 MKFDRYDFLPHAPAESWMNIPVCINYTATMPEGS 138 (139)
Q Consensus 105 ~~~~~~D~vi~~~~~~~~~~p~~~~~~~~~p~g~ 138 (139)
..++||+|+++.. ....+.....++.++|+|.
T Consensus 109 -~~~~fDlV~~~~~-~~~~~~l~~~~~~LkpGG~ 140 (187)
T PRK00107 109 -QEEKFDVVTSRAV-ASLSDLVELCLPLLKPGGR 140 (187)
T ss_pred -CCCCccEEEEccc-cCHHHHHHHHHHhcCCCeE
Confidence 1457999999863 3344455556778888875
No 20
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.57 E-value=7.9e-15 Score=106.75 Aligned_cols=94 Identities=17% Similarity=0.334 Sum_probs=75.9
Q ss_pred CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757 27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMK 106 (139)
Q Consensus 27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 106 (139)
..++.+|||+|||+|.++..+++.. +.++++++|+++.+++.++++. +++.++.+|+.+ +. +
T Consensus 29 ~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~----------~~~~~~~~d~~~-~~------~ 90 (258)
T PRK01683 29 LENPRYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSRL----------PDCQFVEADIAS-WQ------P 90 (258)
T ss_pred CcCCCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhC----------CCCeEEECchhc-cC------C
Confidence 4677899999999999999999987 4569999999999999998763 567888888543 11 2
Q ss_pred CCceeEEecCcccccccccee---eeeeeccCCCC
Q psy5757 107 FDRYDFLPHAPAESWMNIPVC---INYTATMPEGS 138 (139)
Q Consensus 107 ~~~~D~vi~~~~~~~~~~p~~---~~~~~~~p~g~ 138 (139)
..+||+|+++.++||+.++.. ..++.++|+|.
T Consensus 91 ~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~ 125 (258)
T PRK01683 91 PQALDLIFANASLQWLPDHLELFPRLVSLLAPGGV 125 (258)
T ss_pred CCCccEEEEccChhhCCCHHHHHHHHHHhcCCCcE
Confidence 357999999999999988743 33777888874
No 21
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.57 E-value=9.3e-15 Score=102.75 Aligned_cols=104 Identities=13% Similarity=0.197 Sum_probs=79.5
Q ss_pred HHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccch
Q psy5757 17 LTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMI 95 (139)
Q Consensus 17 ~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~ 95 (139)
..+++.+. ..++.+|||+|||+|..+..+++... +|+++|+|+.+++.++++... +. .++++.+.|+.
T Consensus 20 ~~l~~~l~--~~~~~~vLDiGcG~G~~a~~La~~g~---~V~gvD~S~~~i~~a~~~~~~~~~------~~v~~~~~d~~ 88 (197)
T PRK11207 20 SEVLEAVK--VVKPGKTLDLGCGNGRNSLYLAANGF---DVTAWDKNPMSIANLERIKAAENL------DNLHTAVVDLN 88 (197)
T ss_pred HHHHHhcc--cCCCCcEEEECCCCCHHHHHHHHCCC---EEEEEeCCHHHHHHHHHHHHHcCC------CcceEEecChh
Confidence 44555554 34568999999999999999998753 999999999999999998877 43 56888888854
Q ss_pred hhhHHHhhhccCCceeEEecCccccccccc-----eeeeeeeccCCCC
Q psy5757 96 KRIETVELMMKFDRYDFLPHAPAESWMNIP-----VCINYTATMPEGS 138 (139)
Q Consensus 96 ~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p-----~~~~~~~~~p~g~ 138 (139)
+ +.. .++||+|+++.++||+... ....++.++|+|.
T Consensus 89 ~----~~~---~~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~ 129 (197)
T PRK11207 89 N----LTF---DGEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGY 129 (197)
T ss_pred h----CCc---CCCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcE
Confidence 3 111 2569999999999987632 3444777788874
No 22
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.57 E-value=1.9e-14 Score=93.18 Aligned_cols=113 Identities=19% Similarity=0.205 Sum_probs=86.4
Q ss_pred hHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEE
Q psy5757 13 ISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVA 91 (139)
Q Consensus 13 ~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~ 91 (139)
..+...+...+. ..+++++||+|||+|..+..+++..+ .++++++|+++.+++.+++++.. +. .+++++.
T Consensus 5 ~~~~~~~~~~~~--~~~~~~vldlG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~------~~~~~~~ 75 (124)
T TIGR02469 5 REVRALTLSKLR--LRPGDVLWDIGAGSGSITIEAARLVP-NGRVYAIERNPEALRLIERNARRFGV------SNIVIVE 75 (124)
T ss_pred HHHHHHHHHHcC--CCCCCEEEEeCCCCCHHHHHHHHHCC-CceEEEEcCCHHHHHHHHHHHHHhCC------CceEEEe
Confidence 334455555553 45678999999999999999999874 47999999999999999999877 43 6788888
Q ss_pred ccchhhhHHHhhhccCCceeEEecCccccccccceeeeeeeccCCCCC
Q psy5757 92 LGMIKRIETVELMMKFDRYDFLPHAPAESWMNIPVCINYTATMPEGSY 139 (139)
Q Consensus 92 ~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p~~~~~~~~~p~g~~ 139 (139)
+|+.+.... ..++||+|++....+.........++.++|+|.+
T Consensus 76 ~~~~~~~~~-----~~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~l 118 (124)
T TIGR02469 76 GDAPEALED-----SLPEPDRVFIGGSGGLLQEILEAIWRRLRPGGRI 118 (124)
T ss_pred ccccccChh-----hcCCCCEEEECCcchhHHHHHHHHHHHcCCCCEE
Confidence 885532221 1247999999887776666667778888898853
No 23
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.56 E-value=2.3e-14 Score=99.82 Aligned_cols=112 Identities=16% Similarity=0.174 Sum_probs=84.1
Q ss_pred ccChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEE
Q psy5757 10 IGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIK 88 (139)
Q Consensus 10 ~~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~ 88 (139)
++.......+.+.+. +.++.+|||+|||+|.++..+++.. +.++++++|+++.+++.++++... +. .+++
T Consensus 14 ~~~~~~r~~~~~~l~--~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~n~~~~~~------~~i~ 84 (187)
T PRK08287 14 MTKEEVRALALSKLE--LHRAKHLIDVGAGTGSVSIEAALQF-PSLQVTAIERNPDALRLIKENRQRFGC------GNID 84 (187)
T ss_pred CchHHHHHHHHHhcC--CCCCCEEEEECCcCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCC------CCeE
Confidence 334443444555554 5678899999999999999999987 467999999999999999999877 43 5788
Q ss_pred EEEccchhhhHHHhhhccCCceeEEecCccccccccceeeeeeeccCCCC
Q psy5757 89 FVALGMIKRIETVELMMKFDRYDFLPHAPAESWMNIPVCINYTATMPEGS 138 (139)
Q Consensus 89 ~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p~~~~~~~~~p~g~ 138 (139)
++.+|.... . .++||+|+++...+.+.+.....++.++|+|.
T Consensus 85 ~~~~d~~~~-----~---~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~ 126 (187)
T PRK08287 85 IIPGEAPIE-----L---PGKADAIFIGGSGGNLTAIIDWSLAHLHPGGR 126 (187)
T ss_pred EEecCchhh-----c---CcCCCEEEECCCccCHHHHHHHHHHhcCCCeE
Confidence 888885321 1 24699999988766655555556777888875
No 24
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.56 E-value=1.8e-14 Score=105.76 Aligned_cols=101 Identities=18% Similarity=0.304 Sum_probs=82.3
Q ss_pred CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757 27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMM 105 (139)
Q Consensus 27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 105 (139)
+.++.+|||+|||+|..+..+++..++.++++++|+++.+++.|+++... +. .+++++.+|+.+ +. .
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~------~~v~~~~~d~~~----l~--~ 142 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY------TNVEFRLGEIEA----LP--V 142 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCC------CCEEEEEcchhh----CC--C
Confidence 46889999999999999988888776667899999999999999998876 43 688999998533 22 2
Q ss_pred cCCceeEEecCccccccccc---eeeeeeeccCCCCC
Q psy5757 106 KFDRYDFLPHAPAESWMNIP---VCINYTATMPEGSY 139 (139)
Q Consensus 106 ~~~~~D~vi~~~~~~~~~~p---~~~~~~~~~p~g~~ 139 (139)
+.++||+|+++.++|+.+++ ....++.++|+|.+
T Consensus 143 ~~~~fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l 179 (272)
T PRK11873 143 ADNSVDVIISNCVINLSPDKERVFKEAFRVLKPGGRF 179 (272)
T ss_pred CCCceeEEEEcCcccCCCCHHHHHHHHHHHcCCCcEE
Confidence 34679999999999998865 34558889999853
No 25
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.55 E-value=4.2e-15 Score=105.72 Aligned_cols=95 Identities=17% Similarity=0.249 Sum_probs=78.1
Q ss_pred CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757 28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMK 106 (139)
Q Consensus 28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 106 (139)
.++.+|||+|||-|.++..+|+... +|+|+|+++.+++.|+..... +. ++++.+....+ +.. .
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~Ga---~VtgiD~se~~I~~Ak~ha~e~gv-------~i~y~~~~~ed----l~~--~ 121 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLGA---SVTGIDASEKPIEVAKLHALESGV-------NIDYRQATVED----LAS--A 121 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCCC---eeEEecCChHHHHHHHHhhhhccc-------cccchhhhHHH----HHh--c
Confidence 4789999999999999999999985 999999999999999999887 43 35666666333 321 2
Q ss_pred CCceeEEecCccccccccceeee---eeeccCCCC
Q psy5757 107 FDRYDFLPHAPAESWMNIPVCIN---YTATMPEGS 138 (139)
Q Consensus 107 ~~~~D~vi~~~~~~~~~~p~~~~---~~~~~p~g~ 138 (139)
.++||+|+|..+++|+++|..+. ...++|+|.
T Consensus 122 ~~~FDvV~cmEVlEHv~dp~~~~~~c~~lvkP~G~ 156 (243)
T COG2227 122 GGQFDVVTCMEVLEHVPDPESFLRACAKLVKPGGI 156 (243)
T ss_pred CCCccEEEEhhHHHccCCHHHHHHHHHHHcCCCcE
Confidence 37899999999999999998554 677888885
No 26
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.55 E-value=2.6e-14 Score=103.09 Aligned_cols=100 Identities=16% Similarity=0.251 Sum_probs=79.7
Q ss_pred CCCCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhh
Q psy5757 27 LNENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELM 104 (139)
Q Consensus 27 ~~~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 104 (139)
..++.+|||+|||+|..+..+++... +.++++++|+++.+++.|++++.. +. ..+++++++|+.+ +
T Consensus 51 ~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~-----~~~v~~~~~d~~~----~--- 118 (239)
T TIGR00740 51 VTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHS-----EIPVEILCNDIRH----V--- 118 (239)
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCC-----CCCeEEEECChhh----C---
Confidence 35778999999999999999999763 567999999999999999998876 32 2578999999544 1
Q ss_pred ccCCceeEEecCccccccccc-----eeeeeeeccCCCCC
Q psy5757 105 MKFDRYDFLPHAPAESWMNIP-----VCINYTATMPEGSY 139 (139)
Q Consensus 105 ~~~~~~D~vi~~~~~~~~~~p-----~~~~~~~~~p~g~~ 139 (139)
+...+|+|+++.++||+.+. ....++.++|+|.+
T Consensus 119 -~~~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l 157 (239)
T TIGR00740 119 -EIKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVL 157 (239)
T ss_pred -CCCCCCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEE
Confidence 23458999999999998643 34558888998853
No 27
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.55 E-value=1.1e-14 Score=109.19 Aligned_cols=96 Identities=19% Similarity=0.282 Sum_probs=76.8
Q ss_pred CCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhccC
Q psy5757 29 ENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMKF 107 (139)
Q Consensus 29 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 107 (139)
++.+|||+|||+|.++..+++.. ++|+|+|+++++++.|+++... .. ..+++++++|+.+ +.. ..
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g---~~V~GID~s~~~i~~Ar~~~~~~~~-----~~~i~~~~~dae~----l~~--~~ 196 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMG---ATVTGVDAVDKNVKIARLHADMDPV-----TSTIEYLCTTAEK----LAD--EG 196 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHHHhcCc-----ccceeEEecCHHH----hhh--cc
Confidence 56799999999999999998754 3999999999999999987655 22 2579999999543 222 34
Q ss_pred CceeEEecCccccccccceeee---eeeccCCCC
Q psy5757 108 DRYDFLPHAPAESWMNIPVCIN---YTATMPEGS 138 (139)
Q Consensus 108 ~~~D~vi~~~~~~~~~~p~~~~---~~~~~p~g~ 138 (139)
++||+|++..++||+.+|.... .+.++|+|.
T Consensus 197 ~~FD~Vi~~~vLeHv~d~~~~L~~l~r~LkPGG~ 230 (322)
T PLN02396 197 RKFDAVLSLEVIEHVANPAEFCKSLSALTIPNGA 230 (322)
T ss_pred CCCCEEEEhhHHHhcCCHHHHHHHHHHHcCCCcE
Confidence 6899999999999999885443 777888885
No 28
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.55 E-value=3.1e-14 Score=102.46 Aligned_cols=87 Identities=14% Similarity=0.342 Sum_probs=73.3
Q ss_pred CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757 27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMM 105 (139)
Q Consensus 27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 105 (139)
.....+|||+|||+|..+.+++.+.. +++++++|+++++.+.|+++.+. ++ .++++++++|+.+.. ...
T Consensus 42 ~~~~~~IlDlGaG~G~l~L~la~r~~-~a~I~~VEiq~~~a~~A~~nv~ln~l-----~~ri~v~~~Di~~~~----~~~ 111 (248)
T COG4123 42 VPKKGRILDLGAGNGALGLLLAQRTE-KAKIVGVEIQEEAAEMAQRNVALNPL-----EERIQVIEADIKEFL----KAL 111 (248)
T ss_pred cccCCeEEEecCCcCHHHHHHhccCC-CCcEEEEEeCHHHHHHHHHHHHhCcc-----hhceeEehhhHHHhh----hcc
Confidence 34578999999999999999999985 47999999999999999999998 66 689999999966633 334
Q ss_pred cCCceeEEecCccccccc
Q psy5757 106 KFDRYDFLPHAPAESWMN 123 (139)
Q Consensus 106 ~~~~~D~vi~~~~~~~~~ 123 (139)
...+||+|+|||++.-..
T Consensus 112 ~~~~fD~Ii~NPPyf~~~ 129 (248)
T COG4123 112 VFASFDLIICNPPYFKQG 129 (248)
T ss_pred cccccCEEEeCCCCCCCc
Confidence 456799999999976543
No 29
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.54 E-value=7.3e-15 Score=102.91 Aligned_cols=80 Identities=16% Similarity=0.335 Sum_probs=69.3
Q ss_pred CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccC
Q psy5757 28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKF 107 (139)
Q Consensus 28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 107 (139)
....+|+|+|||+|..+..|++++ |.++++|+|.|++|++.|+.++ ++.+|..+|+.+ +. +.
T Consensus 29 ~~~~~v~DLGCGpGnsTelL~~Rw-P~A~i~GiDsS~~Mla~Aa~rl----------p~~~f~~aDl~~-w~------p~ 90 (257)
T COG4106 29 ERPRRVVDLGCGPGNSTELLARRW-PDAVITGIDSSPAMLAKAAQRL----------PDATFEEADLRT-WK------PE 90 (257)
T ss_pred cccceeeecCCCCCHHHHHHHHhC-CCCeEeeccCCHHHHHHHHHhC----------CCCceecccHhh-cC------CC
Confidence 456799999999999999999999 6889999999999999997774 788899999555 32 34
Q ss_pred CceeEEecCccccccccc
Q psy5757 108 DRYDFLPHAPAESWMNIP 125 (139)
Q Consensus 108 ~~~D~vi~~~~~~~~~~p 125 (139)
...|++++|.+|||+++=
T Consensus 91 ~~~dllfaNAvlqWlpdH 108 (257)
T COG4106 91 QPTDLLFANAVLQWLPDH 108 (257)
T ss_pred Cccchhhhhhhhhhcccc
Confidence 568999999999999974
No 30
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.54 E-value=9.4e-14 Score=95.51 Aligned_cols=93 Identities=14% Similarity=0.251 Sum_probs=71.6
Q ss_pred HHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccc
Q psy5757 16 ILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGM 94 (139)
Q Consensus 16 ~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~ 94 (139)
...+++.+.. .++.++||+|||+|..+..+++.. +..+++++|+++.+++.+++++.. +. ++++++..|.
T Consensus 20 t~lL~~~l~~--~~~~~vLDlG~G~G~i~~~la~~~-~~~~v~~vDi~~~a~~~a~~n~~~n~~------~~v~~~~~d~ 90 (170)
T PF05175_consen 20 TRLLLDNLPK--HKGGRVLDLGCGSGVISLALAKRG-PDAKVTAVDINPDALELAKRNAERNGL------ENVEVVQSDL 90 (170)
T ss_dssp HHHHHHHHHH--HTTCEEEEETSTTSHHHHHHHHTS-TCEEEEEEESBHHHHHHHHHHHHHTTC------TTEEEEESST
T ss_pred HHHHHHHHhh--ccCCeEEEecCChHHHHHHHHHhC-CCCEEEEEcCCHHHHHHHHHHHHhcCc------cccccccccc
Confidence 3355555553 277899999999999999999988 466799999999999999999998 54 4599999996
Q ss_pred hhhhHHHhhhccCCceeEEecCcccccccc
Q psy5757 95 IKRIETVELMMKFDRYDFLPHAPAESWMNI 124 (139)
Q Consensus 95 ~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~ 124 (139)
.+.+ +.++||+|++||++|.-.+
T Consensus 91 ~~~~-------~~~~fD~Iv~NPP~~~~~~ 113 (170)
T PF05175_consen 91 FEAL-------PDGKFDLIVSNPPFHAGGD 113 (170)
T ss_dssp TTTC-------CTTCEEEEEE---SBTTSH
T ss_pred cccc-------cccceeEEEEccchhcccc
Confidence 5422 2468999999999876554
No 31
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.54 E-value=2.2e-14 Score=104.11 Aligned_cols=91 Identities=19% Similarity=0.272 Sum_probs=71.3
Q ss_pred CCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccCC
Q psy5757 29 ENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKFD 108 (139)
Q Consensus 29 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~ 108 (139)
+..+|||+|||+|..+..+++.. .+++++|+|+.+++.++++.. ...++++|+.+ + +.+.+
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~---~~v~~~D~s~~~l~~a~~~~~----------~~~~~~~d~~~----~--~~~~~ 102 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRERG---SQVTALDLSPPMLAQARQKDA----------ADHYLAGDIES----L--PLATA 102 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHcC---CeEEEEECCHHHHHHHHhhCC----------CCCEEEcCccc----C--cCCCC
Confidence 46799999999999999988764 399999999999999987642 23567888543 2 12346
Q ss_pred ceeEEecCccccccccce---eeeeeeccCCCC
Q psy5757 109 RYDFLPHAPAESWMNIPV---CINYTATMPEGS 138 (139)
Q Consensus 109 ~~D~vi~~~~~~~~~~p~---~~~~~~~~p~g~ 138 (139)
+||+|+++.++||+.++. ...++.++|+|.
T Consensus 103 ~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~ 135 (251)
T PRK10258 103 TFDLAWSNLAVQWCGNLSTALRELYRVVRPGGV 135 (251)
T ss_pred cEEEEEECchhhhcCCHHHHHHHHHHHcCCCeE
Confidence 799999999999998874 334778888875
No 32
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.52 E-value=9.8e-14 Score=95.56 Aligned_cols=114 Identities=15% Similarity=0.157 Sum_probs=87.4
Q ss_pred ccChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEE
Q psy5757 10 IGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKF 89 (139)
Q Consensus 10 ~~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~ 89 (139)
++.+++....+..|. +.++..++|+|||||+.+..++. ..|.++++++|-++++++..++|..+ ++.+|+++
T Consensus 17 ~TK~EIRal~ls~L~--~~~g~~l~DIGaGtGsi~iE~a~-~~p~~~v~AIe~~~~a~~~~~~N~~~-----fg~~n~~v 88 (187)
T COG2242 17 MTKEEIRALTLSKLR--PRPGDRLWDIGAGTGSITIEWAL-AGPSGRVIAIERDEEALELIERNAAR-----FGVDNLEV 88 (187)
T ss_pred CcHHHHHHHHHHhhC--CCCCCEEEEeCCCccHHHHHHHH-hCCCceEEEEecCHHHHHHHHHHHHH-----hCCCcEEE
Confidence 455555666666775 68999999999999999999994 45789999999999999999999999 33499999
Q ss_pred EEccchhhhHHHhhhccCCceeEEecCccccccccceeeeeeeccCCCC
Q psy5757 90 VALGMIKRIETVELMMKFDRYDFLPHAPAESWMNIPVCINYTATMPEGS 138 (139)
Q Consensus 90 ~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p~~~~~~~~~p~g~ 138 (139)
+.+++.+.+++ ..++|.+|.... .-++.-.......++|+|+
T Consensus 89 v~g~Ap~~L~~------~~~~daiFIGGg-~~i~~ile~~~~~l~~ggr 130 (187)
T COG2242 89 VEGDAPEALPD------LPSPDAIFIGGG-GNIEEILEAAWERLKPGGR 130 (187)
T ss_pred EeccchHhhcC------CCCCCEEEECCC-CCHHHHHHHHHHHcCcCCe
Confidence 99998775542 236899999887 4444444444444455553
No 33
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.52 E-value=1.1e-13 Score=97.29 Aligned_cols=102 Identities=18% Similarity=0.226 Sum_probs=77.9
Q ss_pred CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757 27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMM 105 (139)
Q Consensus 27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 105 (139)
+.++.++||+|||+|.++..+++..++.++++++|+++.+++.++++... ++ ..+++++.+|+.+.+..
T Consensus 38 ~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~-----~~~v~~~~~d~~~~l~~----- 107 (198)
T PRK00377 38 LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGV-----LNNIVLIKGEAPEILFT----- 107 (198)
T ss_pred CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCC-----CCCeEEEEechhhhHhh-----
Confidence 57889999999999999999998876567999999999999999999887 43 36889999996553321
Q ss_pred cCCceeEEecCccccccccceeeeeeeccCCCC
Q psy5757 106 KFDRYDFLPHAPAESWMNIPVCINYTATMPEGS 138 (139)
Q Consensus 106 ~~~~~D~vi~~~~~~~~~~p~~~~~~~~~p~g~ 138 (139)
..++||+|+++..............+.++|+|.
T Consensus 108 ~~~~~D~V~~~~~~~~~~~~l~~~~~~LkpgG~ 140 (198)
T PRK00377 108 INEKFDRIFIGGGSEKLKEIISASWEIIKKGGR 140 (198)
T ss_pred cCCCCCEEEECCCcccHHHHHHHHHHHcCCCcE
Confidence 125799999976544444444444666777774
No 34
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.52 E-value=6.9e-14 Score=102.36 Aligned_cols=106 Identities=29% Similarity=0.321 Sum_probs=80.7
Q ss_pred HHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccch
Q psy5757 16 ILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMI 95 (139)
Q Consensus 16 ~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~ 95 (139)
...++..+. +.++.+|||+|||+|..+..+++... ++++++|+++.+++.|+++... ..++.++++|+.
T Consensus 41 ~~~~l~~l~--l~~~~~VLDiGcG~G~~a~~la~~~~--~~v~giD~s~~~~~~a~~~~~~-------~~~i~~~~~D~~ 109 (263)
T PTZ00098 41 TTKILSDIE--LNENSKVLDIGSGLGGGCKYINEKYG--AHVHGVDICEKMVNIAKLRNSD-------KNKIEFEANDIL 109 (263)
T ss_pred HHHHHHhCC--CCCCCEEEEEcCCCChhhHHHHhhcC--CEEEEEECCHHHHHHHHHHcCc-------CCceEEEECCcc
Confidence 445555553 57889999999999999999987653 4999999999999999987654 257889999964
Q ss_pred hhhHHHhhhccCCceeEEecCccccccc--cc---eeeeeeeccCCCC
Q psy5757 96 KRIETVELMMKFDRYDFLPHAPAESWMN--IP---VCINYTATMPEGS 138 (139)
Q Consensus 96 ~~~~~~~~~~~~~~~D~vi~~~~~~~~~--~p---~~~~~~~~~p~g~ 138 (139)
+ .+.+.++||+|++..+++++. ++ ....++.++|+|.
T Consensus 110 ~------~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~ 151 (263)
T PTZ00098 110 K------KDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGI 151 (263)
T ss_pred c------CCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcE
Confidence 3 122356899999988877764 33 3444888899885
No 35
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.51 E-value=7.1e-14 Score=106.66 Aligned_cols=98 Identities=13% Similarity=0.174 Sum_probs=74.9
Q ss_pred CCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhccCC
Q psy5757 30 NSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMKFD 108 (139)
Q Consensus 30 ~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~ 108 (139)
+.+|||+|||+|..+..++++. |..+++++|+|+.+++.|++++.. .. -...+++++..|+.+.+ +.+
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~-P~~~V~~vD~S~~Av~~A~~N~~~n~~---~~~~~v~~~~~D~l~~~-------~~~ 297 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASSRLNVETNMP---EALDRCEFMINNALSGV-------EPF 297 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCc---ccCceEEEEEccccccC-------CCC
Confidence 4699999999999999999987 577999999999999999999876 21 00136888888864321 235
Q ss_pred ceeEEecCcccccccc---c-----eeeeeeeccCCCC
Q psy5757 109 RYDFLPHAPAESWMNI---P-----VCINYTATMPEGS 138 (139)
Q Consensus 109 ~~D~vi~~~~~~~~~~---p-----~~~~~~~~~p~g~ 138 (139)
+||+|++||+||.... . ....++.++|+|.
T Consensus 298 ~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~ 335 (378)
T PRK15001 298 RFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGE 335 (378)
T ss_pred CEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCE
Confidence 7999999999997531 1 1223677888885
No 36
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.51 E-value=5.6e-14 Score=99.17 Aligned_cols=101 Identities=18% Similarity=0.207 Sum_probs=77.6
Q ss_pred CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757 28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMK 106 (139)
Q Consensus 28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 106 (139)
.++.+|||+|||+|..+..+++.. +..+++++|+++.+++.+++++.. +. .++.++++|+.+.+. ...+
T Consensus 39 ~~~~~VLDiGcGtG~~~~~la~~~-p~~~v~gVD~s~~~i~~a~~~~~~~~~------~~v~~~~~d~~~~l~---~~~~ 108 (202)
T PRK00121 39 NDAPIHLEIGFGKGEFLVEMAKAN-PDINFIGIEVHEPGVGKALKKIEEEGL------TNLRLLCGDAVEVLL---DMFP 108 (202)
T ss_pred CCCCeEEEEccCCCHHHHHHHHHC-CCccEEEEEechHHHHHHHHHHHHcCC------CCEEEEecCHHHHHH---HHcC
Confidence 367899999999999999999887 456899999999999999999877 43 689999999622222 1223
Q ss_pred CCceeEEecCcccccccc-----------ceeeeeeeccCCCC
Q psy5757 107 FDRYDFLPHAPAESWMNI-----------PVCINYTATMPEGS 138 (139)
Q Consensus 107 ~~~~D~vi~~~~~~~~~~-----------p~~~~~~~~~p~g~ 138 (139)
.++||+|+++.+.+|... .....++.++|+|.
T Consensus 109 ~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~ 151 (202)
T PRK00121 109 DGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGE 151 (202)
T ss_pred ccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCE
Confidence 467999999877666442 23444778888885
No 37
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.50 E-value=9e-14 Score=109.23 Aligned_cols=106 Identities=15% Similarity=0.245 Sum_probs=82.9
Q ss_pred HHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchh
Q psy5757 17 LTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIK 96 (139)
Q Consensus 17 ~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~ 96 (139)
..+++.+. +.++.+|||+|||+|..+..+++..+ ++++|+|+|+.+++.|+++.... ..+++++++|+.+
T Consensus 256 e~l~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvDiS~~~l~~A~~~~~~~------~~~v~~~~~d~~~ 325 (475)
T PLN02336 256 KEFVDKLD--LKPGQKVLDVGCGIGGGDFYMAENFD--VHVVGIDLSVNMISFALERAIGR------KCSVEFEVADCTK 325 (475)
T ss_pred HHHHHhcC--CCCCCEEEEEeccCCHHHHHHHHhcC--CEEEEEECCHHHHHHHHHHhhcC------CCceEEEEcCccc
Confidence 44555543 46778999999999999999998763 48999999999999998876541 2478999999644
Q ss_pred hhHHHhhhccCCceeEEecCcccccccccee---eeeeeccCCCC
Q psy5757 97 RIETVELMMKFDRYDFLPHAPAESWMNIPVC---INYTATMPEGS 138 (139)
Q Consensus 97 ~~~~~~~~~~~~~~D~vi~~~~~~~~~~p~~---~~~~~~~p~g~ 138 (139)
. ..+.++||+|++..+++|+.+|.. ..++.++|+|.
T Consensus 326 ----~--~~~~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~ 364 (475)
T PLN02336 326 ----K--TYPDNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGK 364 (475)
T ss_pred ----C--CCCCCCEEEEEECCcccccCCHHHHHHHHHHHcCCCeE
Confidence 1 123467999999999999998754 44889999985
No 38
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.49 E-value=5.4e-14 Score=103.35 Aligned_cols=96 Identities=17% Similarity=0.193 Sum_probs=73.0
Q ss_pred CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757 27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMM 105 (139)
Q Consensus 27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 105 (139)
+++|++|||||||.|.++..++++.+. +|+|+.+|++..+.+++++.. ++ .+++++...|..+ +.
T Consensus 60 l~~G~~vLDiGcGwG~~~~~~a~~~g~--~v~gitlS~~Q~~~a~~~~~~~gl-----~~~v~v~~~D~~~-~~------ 125 (273)
T PF02353_consen 60 LKPGDRVLDIGCGWGGLAIYAAERYGC--HVTGITLSEEQAEYARERIREAGL-----EDRVEVRLQDYRD-LP------ 125 (273)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCSTS-----SSTEEEEES-GGG---------
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCc--EEEEEECCHHHHHHHHHHHHhcCC-----CCceEEEEeeccc-cC------
Confidence 689999999999999999999999754 999999999999999999998 76 5689999999543 21
Q ss_pred cCCceeEEecCccccccccc-----eeeeeeeccCCCC
Q psy5757 106 KFDRYDFLPHAPAESWMNIP-----VCINYTATMPEGS 138 (139)
Q Consensus 106 ~~~~~D~vi~~~~~~~~~~p-----~~~~~~~~~p~g~ 138 (139)
.+||.|+|-..+.++... .....+.++|+|.
T Consensus 126 --~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~ 161 (273)
T PF02353_consen 126 --GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGR 161 (273)
T ss_dssp ---S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEE
T ss_pred --CCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcE
Confidence 379999999999988532 4555788888885
No 39
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.49 E-value=7.1e-16 Score=96.82 Aligned_cols=95 Identities=15% Similarity=0.290 Sum_probs=58.4
Q ss_pred EEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhccCCceeE
Q psy5757 34 LEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMKFDRYDF 112 (139)
Q Consensus 34 LdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~ 112 (139)
||+|||+|.++..+.+.. +..+++++|+|+.+++.+++++.. .. .+......+..+... ....++||+
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~------~~~~~~~~~~~~~~~----~~~~~~fD~ 69 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGN------DNFERLRFDVLDLFD----YDPPESFDL 69 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT---------EEEEE--SSS-------CCC----SE
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCC------cceeEEEeecCChhh----cccccccce
Confidence 799999999999999997 567999999999999888888877 32 344444333222111 112258999
Q ss_pred EecCccccccccce---eeeeeeccCCCCC
Q psy5757 113 LPHAPAESWMNIPV---CINYTATMPEGSY 139 (139)
Q Consensus 113 vi~~~~~~~~~~p~---~~~~~~~~p~g~~ 139 (139)
|++..++||+.++. ...+..++|+|.+
T Consensus 70 V~~~~vl~~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 70 VVASNVLHHLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp EEEE-TTS--S-HHHHHHHHTTT-TSS-EE
T ss_pred ehhhhhHhhhhhHHHHHHHHHHHcCCCCCC
Confidence 99999999997664 4448889999853
No 40
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.49 E-value=4.4e-14 Score=89.07 Aligned_cols=92 Identities=15% Similarity=0.334 Sum_probs=67.1
Q ss_pred EEEEcccCChhHHHHHHHc--CCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhccCCc
Q psy5757 33 VLEIGSGSGYLTNMISELM--NSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMKFDR 109 (139)
Q Consensus 33 iLdiG~G~G~~~~~l~~~~--~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~ 109 (139)
|||+|||+|..+..+++.. ++..+++++|+|+++++.++++... + .+++++++|+.+ ++ . ...+
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~-------~~~~~~~~D~~~-l~---~--~~~~ 67 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDG-------PKVRFVQADARD-LP---F--SDGK 67 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTT-------TTSEEEESCTTC-HH---H--HSSS
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcC-------CceEEEECCHhH-Cc---c--cCCC
Confidence 7999999999999999987 2335999999999999999999876 2 378999999766 33 2 3568
Q ss_pred eeEEec-Cccccccccce-----eeeeeeccCCC
Q psy5757 110 YDFLPH-APAESWMNIPV-----CINYTATMPEG 137 (139)
Q Consensus 110 ~D~vi~-~~~~~~~~~p~-----~~~~~~~~p~g 137 (139)
||+|++ ..++|++.+.. ....+.+.|+|
T Consensus 68 ~D~v~~~~~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 68 FDLVVCSGLSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp EEEEEE-TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred eeEEEEcCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 999999 55588876543 23355555554
No 41
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.49 E-value=1.5e-13 Score=96.42 Aligned_cols=101 Identities=12% Similarity=0.104 Sum_probs=79.3
Q ss_pred CCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhccC
Q psy5757 29 ENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMKF 107 (139)
Q Consensus 29 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 107 (139)
...++||+|||+|..+..+++.. |..+++|+|+++.+++.|++++.. ++ .|++++++|+.+.... ..+.
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~-p~~~v~gvD~~~~~l~~a~~~~~~~~l------~ni~~i~~d~~~~~~~---~~~~ 85 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQN-PDKNFLGIEIHTPIVLAANNKANKLGL------KNLHVLCGDANELLDK---FFPD 85 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHhCC------CCEEEEccCHHHHHHh---hCCC
Confidence 55689999999999999999987 577999999999999999998877 54 6999999997653321 1234
Q ss_pred CceeEEecCccccccccc-----------eeeeeeeccCCCCC
Q psy5757 108 DRYDFLPHAPAESWMNIP-----------VCINYTATMPEGSY 139 (139)
Q Consensus 108 ~~~D~vi~~~~~~~~~~p-----------~~~~~~~~~p~g~~ 139 (139)
+++|.|+++.+.+|.... .....+.++|+|.+
T Consensus 86 ~~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l 128 (194)
T TIGR00091 86 GSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVI 128 (194)
T ss_pred CceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEE
Confidence 579999999887775432 33457888888853
No 42
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.48 E-value=2.2e-13 Score=98.18 Aligned_cols=97 Identities=16% Similarity=0.213 Sum_probs=77.3
Q ss_pred HHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccc
Q psy5757 16 ILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGM 94 (139)
Q Consensus 16 ~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~ 94 (139)
..+.+..+.. ..+.++|||+|||+|+.+..+++..++.++++++|+++++++.|+++++. ++ ..+++++.+|+
T Consensus 56 ~g~~L~~l~~-~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl-----~~~i~~~~gda 129 (234)
T PLN02781 56 EGLFLSMLVK-IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGV-----DHKINFIQSDA 129 (234)
T ss_pred HHHHHHHHHH-HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEEccH
Confidence 3455555552 55678999999999999999999886678999999999999999999998 65 46899999998
Q ss_pred hhhhHHHhhhccCCceeEEecCcc
Q psy5757 95 IKRIETVELMMKFDRYDFLPHAPA 118 (139)
Q Consensus 95 ~~~~~~~~~~~~~~~~D~vi~~~~ 118 (139)
.+.+..+....+.++||+|+....
T Consensus 130 ~~~L~~l~~~~~~~~fD~VfiDa~ 153 (234)
T PLN02781 130 LSALDQLLNNDPKPEFDFAFVDAD 153 (234)
T ss_pred HHHHHHHHhCCCCCCCCEEEECCC
Confidence 886665432222457999998864
No 43
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.48 E-value=1.5e-13 Score=100.54 Aligned_cols=96 Identities=16% Similarity=0.174 Sum_probs=80.7
Q ss_pred CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757 27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMM 105 (139)
Q Consensus 27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 105 (139)
+++|+++||||||-|.++..+|++.+. +|+|+++|+++.+.+++++.. ++ ..+++++..|..+ +
T Consensus 70 L~~G~~lLDiGCGWG~l~~~aA~~y~v--~V~GvTlS~~Q~~~~~~r~~~~gl-----~~~v~v~l~d~rd----~---- 134 (283)
T COG2230 70 LKPGMTLLDIGCGWGGLAIYAAEEYGV--TVVGVTLSEEQLAYAEKRIAARGL-----EDNVEVRLQDYRD----F---- 134 (283)
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHcCC--EEEEeeCCHHHHHHHHHHHHHcCC-----CcccEEEeccccc----c----
Confidence 789999999999999999999999843 999999999999999999988 77 4689999998443 2
Q ss_pred cCCceeEEecCcccccccc-----ceeeeeeeccCCCC
Q psy5757 106 KFDRYDFLPHAPAESWMNI-----PVCINYTATMPEGS 138 (139)
Q Consensus 106 ~~~~~D~vi~~~~~~~~~~-----p~~~~~~~~~p~g~ 138 (139)
.++||-|+|-..|+++-. .....+..++|+|.
T Consensus 135 -~e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~ 171 (283)
T COG2230 135 -EEPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGR 171 (283)
T ss_pred -ccccceeeehhhHHHhCcccHHHHHHHHHhhcCCCce
Confidence 244999999999888764 34555778888875
No 44
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.48 E-value=3.8e-13 Score=99.49 Aligned_cols=103 Identities=14% Similarity=0.206 Sum_probs=76.5
Q ss_pred hhcccccChHHHHHHHHHhcccC--CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hcccc
Q psy5757 5 KIGAAIGGISAILTYLSIIQPHL--NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARL 81 (139)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~l~~~~--~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~ 81 (139)
..+..++.+.....+...+...+ .++.+|||+|||+|..+..+++.. +..+++++|+|+.+++.|++++.. +.
T Consensus 95 ~~~vlipr~~te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~~-~~~~v~avDis~~al~~A~~n~~~~~~--- 170 (284)
T TIGR03533 95 DERVLIPRSPIAELIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAF-PEAEVDAVDISPDALAVAEINIERHGL--- 170 (284)
T ss_pred CCCCccCCCchHHHHHHHHHHHhccCCCCEEEEEeCchhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCC---
Confidence 34566676664444444333222 345789999999999999999987 466999999999999999999987 44
Q ss_pred ccCCcEEEEEccchhhhHHHhhhccCCceeEEecCcccc
Q psy5757 82 LTDGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAES 120 (139)
Q Consensus 82 ~~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~ 120 (139)
..+++++++|+.+.+ +.++||+|++||++.
T Consensus 171 --~~~i~~~~~D~~~~~-------~~~~fD~Iv~NPPy~ 200 (284)
T TIGR03533 171 --EDRVTLIQSDLFAAL-------PGRKYDLIVSNPPYV 200 (284)
T ss_pred --CCcEEEEECchhhcc-------CCCCccEEEECCCCC
Confidence 257999999964421 234799999999843
No 45
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.48 E-value=1.4e-13 Score=96.69 Aligned_cols=103 Identities=17% Similarity=0.192 Sum_probs=76.0
Q ss_pred HHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccch
Q psy5757 17 LTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMI 95 (139)
Q Consensus 17 ~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~ 95 (139)
..+.+.+. ..++.+|||+|||+|..+..++++.. +|+++|+|+.+++.++++... ++ ++++...|+.
T Consensus 20 ~~l~~~~~--~~~~~~vLDiGcG~G~~a~~la~~g~---~V~~iD~s~~~l~~a~~~~~~~~~-------~v~~~~~d~~ 87 (195)
T TIGR00477 20 SAVREAVK--TVAPCKTLDLGCGQGRNSLYLSLAGY---DVRAWDHNPASIASVLDMKARENL-------PLRTDAYDIN 87 (195)
T ss_pred HHHHHHhc--cCCCCcEEEeCCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHHhCC-------CceeEeccch
Confidence 34445553 34567999999999999999998753 999999999999999988766 33 3666667743
Q ss_pred hhhHHHhhhccCCceeEEecCcccccccc-----ceeeeeeeccCCCC
Q psy5757 96 KRIETVELMMKFDRYDFLPHAPAESWMNI-----PVCINYTATMPEGS 138 (139)
Q Consensus 96 ~~~~~~~~~~~~~~~D~vi~~~~~~~~~~-----p~~~~~~~~~p~g~ 138 (139)
. +. . .++||+|+++.++|++.. .....++.++|+|.
T Consensus 88 ~-~~---~---~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 128 (195)
T TIGR00477 88 A-AA---L---NEDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGY 128 (195)
T ss_pred h-cc---c---cCCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcE
Confidence 2 11 1 246999999999998853 23444777788884
No 46
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.48 E-value=3.1e-13 Score=101.31 Aligned_cols=101 Identities=20% Similarity=0.345 Sum_probs=79.8
Q ss_pred ccccChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCc
Q psy5757 8 AAIGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGH 86 (139)
Q Consensus 8 ~~~~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~ 86 (139)
+..+.+....++++.+. ++++.+|||+|||+|..+..+++..+..++|+++|+++++++.|+++++. +. ++
T Consensus 61 ~~~~~p~l~a~ll~~L~--i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~------~n 132 (322)
T PRK13943 61 STSSQPSLMALFMEWVG--LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI------EN 132 (322)
T ss_pred ccCCcHHHHHHHHHhcC--CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC------Cc
Confidence 35556777788888775 57889999999999999999999886556899999999999999999887 44 78
Q ss_pred EEEEEccchhhhHHHhhhccCCceeEEecCcccccc
Q psy5757 87 IKFVALGMIKRIETVELMMKFDRYDFLPHAPAESWM 122 (139)
Q Consensus 87 i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~ 122 (139)
++++++|+.+.+. ....||+|++....+.+
T Consensus 133 V~~i~gD~~~~~~------~~~~fD~Ii~~~g~~~i 162 (322)
T PRK13943 133 VIFVCGDGYYGVP------EFAPYDVIFVTVGVDEV 162 (322)
T ss_pred EEEEeCChhhccc------ccCCccEEEECCchHHh
Confidence 9999999655332 12469999987654443
No 47
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.48 E-value=4.9e-14 Score=103.87 Aligned_cols=121 Identities=18% Similarity=0.216 Sum_probs=86.6
Q ss_pred hhhcccccCh--HHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccc
Q psy5757 4 VKIGAAIGGI--SAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNAR 80 (139)
Q Consensus 4 ~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~ 80 (139)
+.+|..|.+. ..+..+++++.+..++++++||+|||||.++.+.++.... +++|+|++|.+++.|++|+.. +.
T Consensus 135 lDPGlAFGTG~HpTT~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kLGA~--~v~g~DiDp~AV~aa~eNa~~N~v-- 210 (300)
T COG2264 135 LDPGLAFGTGTHPTTSLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKLGAK--KVVGVDIDPQAVEAARENARLNGV-- 210 (300)
T ss_pred EccccccCCCCChhHHHHHHHHHHhhcCCCEEEEecCChhHHHHHHHHcCCc--eEEEecCCHHHHHHHHHHHHHcCC--
Confidence 3455555432 2467888888888899999999999999999999998853 899999999999999999988 33
Q ss_pred cccCCcEEEEEccchhhhHHHhhhccCCceeEEecCccccccccceeeeeeeccCCCC
Q psy5757 81 LLTDGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAESWMNIPVCINYTATMPEGS 138 (139)
Q Consensus 81 ~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p~~~~~~~~~p~g~ 138 (139)
...++....+..+ .....+||+|++|..=+-+.......++.++|+|.
T Consensus 211 ---~~~~~~~~~~~~~-------~~~~~~~DvIVANILA~vl~~La~~~~~~lkpgg~ 258 (300)
T COG2264 211 ---ELLVQAKGFLLLE-------VPENGPFDVIVANILAEVLVELAPDIKRLLKPGGR 258 (300)
T ss_pred ---chhhhcccccchh-------hcccCcccEEEehhhHHHHHHHHHHHHHHcCCCce
Confidence 1112222222111 11235899999999644444555566778888775
No 48
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=2.7e-13 Score=100.03 Aligned_cols=98 Identities=15% Similarity=0.258 Sum_probs=72.6
Q ss_pred hhcccccChHHHHHHHHHhcccCCCCC-eEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccc
Q psy5757 5 KIGAAIGGISAILTYLSIIQPHLNENS-KVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLL 82 (139)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~l~~~~~~~~-~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~ 82 (139)
+.++.++++. +..+++.+........ +|||+|||||..+..++... +.+.|+++|+|+.+++.|++|+.. ++
T Consensus 86 ~~~vliPr~d-Te~Lve~~l~~~~~~~~~ilDlGTGSG~iai~la~~~-~~~~V~a~Dis~~Al~~A~~Na~~~~l---- 159 (280)
T COG2890 86 DEGVLIPRPD-TELLVEAALALLLQLDKRILDLGTGSGAIAIALAKEG-PDAEVIAVDISPDALALARENAERNGL---- 159 (280)
T ss_pred CCCceecCCc-hHHHHHHHHHhhhhcCCcEEEecCChHHHHHHHHhhC-cCCeEEEEECCHHHHHHHHHHHHHcCC----
Confidence 4466777777 3444444221222223 79999999999999999999 467999999999999999999998 43
Q ss_pred cCCcEEEEEccchhhhHHHhhhccCCceeEEecCcc
Q psy5757 83 TDGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPA 118 (139)
Q Consensus 83 ~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~ 118 (139)
.++.++.+|..+.+ .++||+|++||+
T Consensus 160 --~~~~~~~~dlf~~~--------~~~fDlIVsNPP 185 (280)
T COG2890 160 --VRVLVVQSDLFEPL--------RGKFDLIVSNPP 185 (280)
T ss_pred --ccEEEEeeeccccc--------CCceeEEEeCCC
Confidence 56666666743321 238999999998
No 49
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.47 E-value=5e-14 Score=104.30 Aligned_cols=117 Identities=18% Similarity=0.205 Sum_probs=78.8
Q ss_pred hhhcccccCh--HHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccc
Q psy5757 4 VKIGAAIGGI--SAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNAR 80 (139)
Q Consensus 4 ~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~ 80 (139)
+.+|..|.+. ..+..+++++.....++++|||+|||||.++...++.+.. +|+++|++|.+++.|++|+.. +.
T Consensus 134 idPg~AFGTG~H~TT~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~klGA~--~v~a~DiDp~Av~~a~~N~~~N~~-- 209 (295)
T PF06325_consen 134 IDPGMAFGTGHHPTTRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKLGAK--KVVAIDIDPLAVEAARENAELNGV-- 209 (295)
T ss_dssp ESTTSSS-SSHCHHHHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHTTBS--EEEEEESSCHHHHHHHHHHHHTT---
T ss_pred ECCCCcccCCCCHHHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHcCCC--eEEEecCCHHHHHHHHHHHHHcCC--
Confidence 4566666533 2466788888877789999999999999999999998753 899999999999999999998 55
Q ss_pred cccCCcEEEEEccchhhhHHHhhhccCCceeEEecCccccccccceeeeeeeccCCC
Q psy5757 81 LLTDGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAESWMNIPVCINYTATMPEG 137 (139)
Q Consensus 81 ~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p~~~~~~~~~p~g 137 (139)
..++.+. ... .....+||+|++|...+-+..........++|+|
T Consensus 210 ---~~~~~v~--~~~--------~~~~~~~dlvvANI~~~vL~~l~~~~~~~l~~~G 253 (295)
T PF06325_consen 210 ---EDRIEVS--LSE--------DLVEGKFDLVVANILADVLLELAPDIASLLKPGG 253 (295)
T ss_dssp ---TTCEEES--CTS--------CTCCS-EEEEEEES-HHHHHHHHHHCHHHEEEEE
T ss_pred ---CeeEEEE--Eec--------ccccccCCEEEECCCHHHHHHHHHHHHHhhCCCC
Confidence 3455442 111 1123779999999875444333333333334433
No 50
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.47 E-value=1.5e-13 Score=101.75 Aligned_cols=108 Identities=17% Similarity=0.137 Sum_probs=80.4
Q ss_pred HHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccc
Q psy5757 16 ILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGM 94 (139)
Q Consensus 16 ~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~ 94 (139)
+..+++.+.....++++|||+|||+|.++..+++... .+++++|+++.+++.|+++... +. ..++.....+.
T Consensus 146 t~l~l~~l~~~~~~g~~VLDvGcGsG~lai~aa~~g~--~~V~avDid~~al~~a~~n~~~n~~-----~~~~~~~~~~~ 218 (288)
T TIGR00406 146 TSLCLEWLEDLDLKDKNVIDVGCGSGILSIAALKLGA--AKVVGIDIDPLAVESARKNAELNQV-----SDRLQVKLIYL 218 (288)
T ss_pred HHHHHHHHHhhcCCCCEEEEeCCChhHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHcCC-----CcceEEEeccc
Confidence 4455566654457889999999999999998887543 3899999999999999999887 43 23455665542
Q ss_pred hhhhHHHhhhccCCceeEEecCccccccccceeeeeeeccCCCC
Q psy5757 95 IKRIETVELMMKFDRYDFLPHAPAESWMNIPVCINYTATMPEGS 138 (139)
Q Consensus 95 ~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p~~~~~~~~~p~g~ 138 (139)
.. ...++||+|++|...+.+.......++.++|+|.
T Consensus 219 ~~--------~~~~~fDlVvan~~~~~l~~ll~~~~~~LkpgG~ 254 (288)
T TIGR00406 219 EQ--------PIEGKADVIVANILAEVIKELYPQFSRLVKPGGW 254 (288)
T ss_pred cc--------ccCCCceEEEEecCHHHHHHHHHHHHHHcCCCcE
Confidence 11 1235799999998877666655666888888885
No 51
>PRK08317 hypothetical protein; Provisional
Probab=99.47 E-value=4e-13 Score=95.90 Aligned_cols=107 Identities=14% Similarity=0.248 Sum_probs=81.9
Q ss_pred HHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh
Q psy5757 18 TYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR 97 (139)
Q Consensus 18 ~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~ 97 (139)
.+.+.+. +.++.+|||+|||+|.++..+++...+.++++++|+++.+++.++++.... ..+++++.+|+.+
T Consensus 10 ~~~~~~~--~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~------~~~~~~~~~d~~~- 80 (241)
T PRK08317 10 RTFELLA--VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL------GPNVEFVRGDADG- 80 (241)
T ss_pred HHHHHcC--CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC------CCceEEEeccccc-
Confidence 3444443 577889999999999999999998855679999999999999998873221 2678888888543
Q ss_pred hHHHhhhccCCceeEEecCcccccccccee---eeeeeccCCCC
Q psy5757 98 IETVELMMKFDRYDFLPHAPAESWMNIPVC---INYTATMPEGS 138 (139)
Q Consensus 98 ~~~~~~~~~~~~~D~vi~~~~~~~~~~p~~---~~~~~~~p~g~ 138 (139)
+ +.+.++||+|+++.+++++.++.. ..++.++|+|.
T Consensus 81 ~-----~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~ 119 (241)
T PRK08317 81 L-----PFPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGR 119 (241)
T ss_pred C-----CCCCCCceEEEEechhhccCCHHHHHHHHHHHhcCCcE
Confidence 1 123467999999999999988643 33677777774
No 52
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.46 E-value=8.2e-13 Score=85.00 Aligned_cols=82 Identities=17% Similarity=0.218 Sum_probs=65.7
Q ss_pred CCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhccCC
Q psy5757 30 NSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMKFD 108 (139)
Q Consensus 30 ~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~ 108 (139)
|.+|||+|||+|.++..+++.. ..+++++|+++..++.++.++.. +. .++++++++|..+.. ...+..
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~-----~~~~~~~~~D~~~~~----~~~~~~ 69 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGL-----DDRVEVIVGDARDLP----EPLPDG 69 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTT-----TTTEEEEESHHHHHH----HTCTTT
T ss_pred CCEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccC-----CceEEEEECchhhch----hhccCc
Confidence 4689999999999999999998 34999999999999999999988 44 468999999965532 233467
Q ss_pred ceeEEecCcccccc
Q psy5757 109 RYDFLPHAPAESWM 122 (139)
Q Consensus 109 ~~D~vi~~~~~~~~ 122 (139)
+||+|++|++++..
T Consensus 70 ~~D~Iv~npP~~~~ 83 (117)
T PF13659_consen 70 KFDLIVTNPPYGPR 83 (117)
T ss_dssp -EEEEEE--STTSB
T ss_pred eeEEEEECCCCccc
Confidence 89999999998743
No 53
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.46 E-value=3.1e-13 Score=101.51 Aligned_cols=97 Identities=18% Similarity=0.220 Sum_probs=73.8
Q ss_pred CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757 28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMK 106 (139)
Q Consensus 28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 106 (139)
.++++|||+|||+|.++..++..... +|+|+|.|+.++..++..... +. ..+++++.+|+.+ ++.
T Consensus 121 l~g~~VLDIGCG~G~~~~~la~~g~~--~V~GiD~S~~~l~q~~a~~~~~~~-----~~~i~~~~~d~e~----lp~--- 186 (322)
T PRK15068 121 LKGRTVLDVGCGNGYHMWRMLGAGAK--LVVGIDPSQLFLCQFEAVRKLLGN-----DQRAHLLPLGIEQ----LPA--- 186 (322)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCCC--EEEEEcCCHHHHHHHHHHHHhcCC-----CCCeEEEeCCHHH----CCC---
Confidence 46789999999999999999998642 699999999888765433222 11 2578999998543 322
Q ss_pred CCceeEEecCccccccccce---eeeeeeccCCCC
Q psy5757 107 FDRYDFLPHAPAESWMNIPV---CINYTATMPEGS 138 (139)
Q Consensus 107 ~~~~D~vi~~~~~~~~~~p~---~~~~~~~~p~g~ 138 (139)
.++||+|++..++||+.+|. ...++.++|+|.
T Consensus 187 ~~~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~ 221 (322)
T PRK15068 187 LKAFDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGE 221 (322)
T ss_pred cCCcCEEEECChhhccCCHHHHHHHHHHhcCCCcE
Confidence 46799999999999999885 344888888885
No 54
>KOG1270|consensus
Probab=99.45 E-value=7.2e-14 Score=100.42 Aligned_cols=94 Identities=19% Similarity=0.320 Sum_probs=74.0
Q ss_pred CCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCC----cEEEEEccchhhhHHHhhh
Q psy5757 30 NSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDG----HIKFVALGMIKRIETVELM 104 (139)
Q Consensus 30 ~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~----~i~~~~~d~~~~~~~~~~~ 104 (139)
|++|||+|||+|.++..|++... +|+|+|+++.+++.|++.... .. + .. ++.+.+.++.+
T Consensus 90 g~~ilDvGCGgGLLSepLArlga---~V~GID~s~~~V~vA~~h~~~dP~---~-~~~~~y~l~~~~~~~E~-------- 154 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGA---QVTGIDASDDMVEVANEHKKMDPV---L-EGAIAYRLEYEDTDVEG-------- 154 (282)
T ss_pred CceEEEeccCccccchhhHhhCC---eeEeecccHHHHHHHHHhhhcCch---h-ccccceeeehhhcchhh--------
Confidence 48899999999999999999886 999999999999999998543 21 1 12 24455555222
Q ss_pred ccCCceeEEecCccccccccceeee---eeeccCCCCC
Q psy5757 105 MKFDRYDFLPHAPAESWMNIPVCIN---YTATMPEGSY 139 (139)
Q Consensus 105 ~~~~~~D~vi~~~~~~~~~~p~~~~---~~~~~p~g~~ 139 (139)
..++||+|++..+++|+.+|..+. .+.++|+|++
T Consensus 155 -~~~~fDaVvcsevleHV~dp~~~l~~l~~~lkP~G~l 191 (282)
T KOG1270|consen 155 -LTGKFDAVVCSEVLEHVKDPQEFLNCLSALLKPNGRL 191 (282)
T ss_pred -cccccceeeeHHHHHHHhCHHHHHHHHHHHhCCCCce
Confidence 235699999999999999997665 7888898874
No 55
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.45 E-value=2.9e-13 Score=102.03 Aligned_cols=96 Identities=19% Similarity=0.203 Sum_probs=77.0
Q ss_pred CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccC
Q psy5757 28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKF 107 (139)
Q Consensus 28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 107 (139)
.++.+|||+|||+|..+..+++..+ ..+++++|+++++++.|+++... .+++++.+|+.+ + +.+.
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~-~~~VtgVD~S~~mL~~A~~k~~~--------~~i~~i~gD~e~----l--p~~~ 176 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEPL--------KECKIIEGDAED----L--PFPT 176 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhhhc--------cCCeEEeccHHh----C--CCCC
Confidence 4678999999999999999998873 45999999999999999887543 567888898543 2 2235
Q ss_pred CceeEEecCccccccccce---eeeeeeccCCCC
Q psy5757 108 DRYDFLPHAPAESWMNIPV---CINYTATMPEGS 138 (139)
Q Consensus 108 ~~~D~vi~~~~~~~~~~p~---~~~~~~~~p~g~ 138 (139)
++||+|+++.++|++.++. ...++.++|+|.
T Consensus 177 ~sFDvVIs~~~L~~~~d~~~~L~e~~rvLkPGG~ 210 (340)
T PLN02490 177 DYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGK 210 (340)
T ss_pred CceeEEEEcChhhhCCCHHHHHHHHHHhcCCCcE
Confidence 6799999999999988874 334788888885
No 56
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.45 E-value=2.5e-13 Score=102.68 Aligned_cols=104 Identities=16% Similarity=0.161 Sum_probs=76.1
Q ss_pred HHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccch
Q psy5757 17 LTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMI 95 (139)
Q Consensus 17 ~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~ 95 (139)
..+++.+.. ....+|||+|||+|.++..+++.. +..+++++|+++.+++.+++++.. +. +.+++..|+.
T Consensus 186 ~lLl~~l~~--~~~g~VLDlGCG~G~ls~~la~~~-p~~~v~~vDis~~Al~~A~~nl~~n~l-------~~~~~~~D~~ 255 (342)
T PRK09489 186 QLLLSTLTP--HTKGKVLDVGCGAGVLSAVLARHS-PKIRLTLSDVSAAALESSRATLAANGL-------EGEVFASNVF 255 (342)
T ss_pred HHHHHhccc--cCCCeEEEeccCcCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCC-------CCEEEEcccc
Confidence 344444432 234589999999999999999987 466999999999999999999887 32 3456667754
Q ss_pred hhhHHHhhhccCCceeEEecCcccccccc--------ceeeeeeeccCCCC
Q psy5757 96 KRIETVELMMKFDRYDFLPHAPAESWMNI--------PVCINYTATMPEGS 138 (139)
Q Consensus 96 ~~~~~~~~~~~~~~~D~vi~~~~~~~~~~--------p~~~~~~~~~p~g~ 138 (139)
+. ..++||+|++|++||+..+ ......+.++|+|.
T Consensus 256 ~~--------~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~ 298 (342)
T PRK09489 256 SD--------IKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGE 298 (342)
T ss_pred cc--------cCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCE
Confidence 31 1357999999999997432 12333667888885
No 57
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.45 E-value=5e-13 Score=92.46 Aligned_cols=80 Identities=19% Similarity=0.219 Sum_probs=65.0
Q ss_pred CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccC
Q psy5757 28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKF 107 (139)
Q Consensus 28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 107 (139)
.++.+|||+|||+|..+..+++... +++++|+++.+++.+++++.... .+++++.+|..+. ..
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~------~~~~~~~~d~~~~--------~~ 80 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKGK---CILTTDINPFAVKELRENAKLNN------VGLDVVMTDLFKG--------VR 80 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHcC------CceEEEEcccccc--------cC
Confidence 4557899999999999999999764 89999999999999999987621 3578888885431 13
Q ss_pred CceeEEecCcccccccc
Q psy5757 108 DRYDFLPHAPAESWMNI 124 (139)
Q Consensus 108 ~~~D~vi~~~~~~~~~~ 124 (139)
++||+|++|+++|...+
T Consensus 81 ~~fD~Vi~n~p~~~~~~ 97 (179)
T TIGR00537 81 GKFDVILFNPPYLPLED 97 (179)
T ss_pred CcccEEEECCCCCCCcc
Confidence 47999999999886654
No 58
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.45 E-value=3.4e-13 Score=96.40 Aligned_cols=106 Identities=17% Similarity=0.295 Sum_probs=78.9
Q ss_pred HHHHHHhcccC-CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccch
Q psy5757 17 LTYLSIIQPHL-NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMI 95 (139)
Q Consensus 17 ~~~~~~l~~~~-~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~ 95 (139)
..+++.+.... ..+.+|||+|||+|..+..+++.. +..+++++|+++.+++.+++... +++.++.+|+.
T Consensus 21 ~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~---------~~~~~~~~d~~ 90 (240)
T TIGR02072 21 KRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRF-PQAEFIALDISAGMLAQAKTKLS---------ENVQFICGDAE 90 (240)
T ss_pred HHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhC-CCCcEEEEeChHHHHHHHHHhcC---------CCCeEEecchh
Confidence 34444444211 344789999999999999999987 46689999999999998887642 36788888854
Q ss_pred hhhHHHhhhccCCceeEEecCccccccccceee---eeeeccCCCC
Q psy5757 96 KRIETVELMMKFDRYDFLPHAPAESWMNIPVCI---NYTATMPEGS 138 (139)
Q Consensus 96 ~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p~~~---~~~~~~p~g~ 138 (139)
+ . ..+.++||+|+++.++||..++... .++.++|+|.
T Consensus 91 ~----~--~~~~~~fD~vi~~~~l~~~~~~~~~l~~~~~~L~~~G~ 130 (240)
T TIGR02072 91 K----L--PLEDSSFDLIVSNLALQWCDDLSQALSELARVLKPGGL 130 (240)
T ss_pred h----C--CCCCCceeEEEEhhhhhhccCHHHHHHHHHHHcCCCcE
Confidence 3 2 1234679999999999999887533 3677788874
No 59
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.44 E-value=8.5e-13 Score=93.32 Aligned_cols=80 Identities=16% Similarity=0.254 Sum_probs=64.8
Q ss_pred cCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757 26 HLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMM 105 (139)
Q Consensus 26 ~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 105 (139)
.+.++.+|||+|||+|..+..+++.. +..+++|+|+|+++++.|+++. +++.+.++|+.+ ..
T Consensus 40 ~~~~~~~VLDiGCG~G~~~~~L~~~~-~~~~v~giDiS~~~l~~A~~~~----------~~~~~~~~d~~~-------~~ 101 (204)
T TIGR03587 40 RLPKIASILELGANIGMNLAALKRLL-PFKHIYGVEINEYAVEKAKAYL----------PNINIIQGSLFD-------PF 101 (204)
T ss_pred hcCCCCcEEEEecCCCHHHHHHHHhC-CCCeEEEEECCHHHHHHHHhhC----------CCCcEEEeeccC-------CC
Confidence 35677899999999999999999876 3459999999999999998764 345677787543 12
Q ss_pred cCCceeEEecCccccccc
Q psy5757 106 KFDRYDFLPHAPAESWMN 123 (139)
Q Consensus 106 ~~~~~D~vi~~~~~~~~~ 123 (139)
+.++||+|+++.++||+.
T Consensus 102 ~~~sfD~V~~~~vL~hl~ 119 (204)
T TIGR03587 102 KDNFFDLVLTKGVLIHIN 119 (204)
T ss_pred CCCCEEEEEECChhhhCC
Confidence 356899999999998885
No 60
>PHA03412 putative methyltransferase; Provisional
Probab=99.44 E-value=7.1e-13 Score=94.86 Aligned_cols=98 Identities=12% Similarity=0.160 Sum_probs=76.2
Q ss_pred hhcccccChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcC--CCceEEEEeCCHHHHHHHHHHHHhhccccc
Q psy5757 5 KIGAAIGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMN--STGQVIGIEHVPQLVNSSIQNILHSNARLL 82 (139)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~--~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~ 82 (139)
+.|+++++.+++..+.... ..+.+|||+|||+|.++..++++.. +..+++++|+++.+++.|+++.
T Consensus 29 ~~GqFfTP~~iAr~~~i~~----~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~-------- 96 (241)
T PHA03412 29 ELGAFFTPIGLARDFTIDA----CTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV-------- 96 (241)
T ss_pred cCCccCCCHHHHHHHHHhc----cCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc--------
Confidence 4688999998777664321 3367999999999999999998752 2458999999999999999774
Q ss_pred cCCcEEEEEccchhhhHHHhhhccCCceeEEecCccccccc
Q psy5757 83 TDGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAESWMN 123 (139)
Q Consensus 83 ~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~ 123 (139)
.+++++.+|+.+. . ...+||+||+||+++-..
T Consensus 97 --~~~~~~~~D~~~~-~------~~~~FDlIIsNPPY~~~~ 128 (241)
T PHA03412 97 --PEATWINADALTT-E------FDTLFDMAISNPPFGKIK 128 (241)
T ss_pred --cCCEEEEcchhcc-c------ccCCccEEEECCCCCCcc
Confidence 4577888886541 1 134799999999988755
No 61
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.44 E-value=1e-12 Score=98.18 Aligned_cols=102 Identities=14% Similarity=0.220 Sum_probs=75.3
Q ss_pred hhcccccChHHHHHHHHHhcccCC-C-CCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hcccc
Q psy5757 5 KIGAAIGGISAILTYLSIIQPHLN-E-NSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARL 81 (139)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~l~~~~~-~-~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~ 81 (139)
..+..++.+.....+...+...++ . ..+|||+|||+|..+..++... +..+++++|+|+.+++.|+++++. +.
T Consensus 107 ~~~vlipr~~te~lv~~~l~~~~~~~~~~~VLDlG~GsG~iai~la~~~-p~~~V~avDis~~al~~A~~n~~~~~l--- 182 (307)
T PRK11805 107 DERVLVPRSPIAELIEDGFAPWLEDPPVTRILDLCTGSGCIAIACAYAF-PDAEVDAVDISPDALAVAEINIERHGL--- 182 (307)
T ss_pred CCCCcCCCCchHHHHHHHHHHHhccCCCCEEEEEechhhHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCC---
Confidence 345666666654444433332222 2 2689999999999999999987 466999999999999999999987 44
Q ss_pred ccCCcEEEEEccchhhhHHHhhhccCCceeEEecCccc
Q psy5757 82 LTDGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAE 119 (139)
Q Consensus 82 ~~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~ 119 (139)
..+++++++|+.+.+ +.++||+|++||++
T Consensus 183 --~~~i~~~~~D~~~~l-------~~~~fDlIvsNPPy 211 (307)
T PRK11805 183 --EDRVTLIESDLFAAL-------PGRRYDLIVSNPPY 211 (307)
T ss_pred --CCcEEEEECchhhhC-------CCCCccEEEECCCC
Confidence 256999999964422 23579999999874
No 62
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.44 E-value=3.8e-13 Score=95.04 Aligned_cols=97 Identities=20% Similarity=0.281 Sum_probs=78.7
Q ss_pred HHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccc
Q psy5757 16 ILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGM 94 (139)
Q Consensus 16 ~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~ 94 (139)
..+++..+.. ..+.++||||||++|+-+..+++..++.++++++|.+++..+.|++++++ ++ .++++++.+|+
T Consensus 33 ~g~lL~~l~~-~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~-----~~~I~~~~gda 106 (205)
T PF01596_consen 33 TGQLLQMLVR-LTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGL-----DDRIEVIEGDA 106 (205)
T ss_dssp HHHHHHHHHH-HHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTG-----GGGEEEEES-H
T ss_pred HHHHHHHHHH-hcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCC-----CCcEEEEEecc
Confidence 4455555553 45668999999999999999999997789999999999999999999998 66 47899999999
Q ss_pred hhhhHHHhhhccCCceeEEecCcc
Q psy5757 95 IKRIETVELMMKFDRYDFLPHAPA 118 (139)
Q Consensus 95 ~~~~~~~~~~~~~~~~D~vi~~~~ 118 (139)
.+.+.++....+.++||+||....
T Consensus 107 ~~~l~~l~~~~~~~~fD~VFiDa~ 130 (205)
T PF01596_consen 107 LEVLPELANDGEEGQFDFVFIDAD 130 (205)
T ss_dssp HHHHHHHHHTTTTTSEEEEEEEST
T ss_pred HhhHHHHHhccCCCceeEEEEccc
Confidence 887776654433468999998876
No 63
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.43 E-value=6.3e-13 Score=99.37 Aligned_cols=97 Identities=16% Similarity=0.171 Sum_probs=72.4
Q ss_pred CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757 28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMK 106 (139)
Q Consensus 28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 106 (139)
.++++|||+|||+|.++..++..... .++|+|.|+.++..++..-.. .. ..++++...++ +++..
T Consensus 120 ~~g~~VLDvGCG~G~~~~~~~~~g~~--~v~GiDpS~~ml~q~~~~~~~~~~-----~~~v~~~~~~i----e~lp~--- 185 (314)
T TIGR00452 120 LKGRTILDVGCGSGYHMWRMLGHGAK--SLVGIDPTVLFLCQFEAVRKLLDN-----DKRAILEPLGI----EQLHE--- 185 (314)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCCC--EEEEEcCCHHHHHHHHHHHHHhcc-----CCCeEEEECCH----HHCCC---
Confidence 56789999999999999998887632 799999999998765432222 11 25677888774 33321
Q ss_pred CCceeEEecCccccccccceee---eeeeccCCCC
Q psy5757 107 FDRYDFLPHAPAESWMNIPVCI---NYTATMPEGS 138 (139)
Q Consensus 107 ~~~~D~vi~~~~~~~~~~p~~~---~~~~~~p~g~ 138 (139)
..+||+|+++.+++|+.+|... .++.++|+|.
T Consensus 186 ~~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~ 220 (314)
T TIGR00452 186 LYAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGE 220 (314)
T ss_pred CCCcCEEEEcchhhccCCHHHHHHHHHHhcCCCCE
Confidence 2479999999999999988533 3788889885
No 64
>PLN02476 O-methyltransferase
Probab=99.43 E-value=8.5e-13 Score=96.89 Aligned_cols=97 Identities=10% Similarity=0.128 Sum_probs=78.9
Q ss_pred HHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccc
Q psy5757 16 ILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGM 94 (139)
Q Consensus 16 ~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~ 94 (139)
..+.+..+.. ..+.++|||+|+++|+.+..+++..++.++++++|.+++..+.|++++++ +. .++++++.+|+
T Consensus 106 ~g~lL~~L~~-~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl-----~~~I~li~GdA 179 (278)
T PLN02476 106 QAQLLAMLVQ-ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGV-----SHKVNVKHGLA 179 (278)
T ss_pred HHHHHHHHHH-hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEEcCH
Confidence 4455555542 55678999999999999999999887778999999999999999999998 76 46899999999
Q ss_pred hhhhHHHhhhccCCceeEEecCcc
Q psy5757 95 IKRIETVELMMKFDRYDFLPHAPA 118 (139)
Q Consensus 95 ~~~~~~~~~~~~~~~~D~vi~~~~ 118 (139)
.+.++.+..+...++||+||....
T Consensus 180 ~e~L~~l~~~~~~~~FD~VFIDa~ 203 (278)
T PLN02476 180 AESLKSMIQNGEGSSYDFAFVDAD 203 (278)
T ss_pred HHHHHHHHhcccCCCCCEEEECCC
Confidence 887765432222457999999886
No 65
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=99.43 E-value=2e-12 Score=94.44 Aligned_cols=97 Identities=19% Similarity=0.296 Sum_probs=79.2
Q ss_pred hhcc-cccChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhcccccc
Q psy5757 5 KIGA-AIGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLT 83 (139)
Q Consensus 5 ~~~~-~~~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~ 83 (139)
++|+ ++..+.+...+.+.+. +.++.+|||+|||+|.++..+++... +++++|+++.+++.+++++..
T Consensus 6 ~~GQnfl~d~~~~~~iv~~~~--~~~~~~VLEIG~G~G~lt~~L~~~~~---~v~~vEid~~~~~~l~~~~~~------- 73 (258)
T PRK14896 6 KLGQHFLIDDRVVDRIVEYAE--DTDGDPVLEIGPGKGALTDELAKRAK---KVYAIELDPRLAEFLRDDEIA------- 73 (258)
T ss_pred cCCccccCCHHHHHHHHHhcC--CCCcCeEEEEeCccCHHHHHHHHhCC---EEEEEECCHHHHHHHHHHhcc-------
Confidence 5678 4467778888888875 56788999999999999999999853 899999999999999988754
Q ss_pred CCcEEEEEccchhhhHHHhhhccCCceeEEecCccccc
Q psy5757 84 DGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAESW 121 (139)
Q Consensus 84 ~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~ 121 (139)
..+++++++|+.+ +. ...+|.|++|++++.
T Consensus 74 ~~~v~ii~~D~~~-~~-------~~~~d~Vv~NlPy~i 103 (258)
T PRK14896 74 AGNVEIIEGDALK-VD-------LPEFNKVVSNLPYQI 103 (258)
T ss_pred CCCEEEEEecccc-CC-------chhceEEEEcCCccc
Confidence 3689999999654 21 234799999999775
No 66
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.42 E-value=1.8e-12 Score=99.64 Aligned_cols=103 Identities=15% Similarity=0.202 Sum_probs=76.6
Q ss_pred hhcccccChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccC
Q psy5757 5 KIGAAIGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTD 84 (139)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~ 84 (139)
..+..++++. ...+.+.+...+.++.++||+|||+|..+..++... +.++++++|+|+.+++.|+++++...
T Consensus 228 ~p~vLIPRpe-TE~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~-p~a~VtAVDiS~~ALe~AreNa~~~g------ 299 (423)
T PRK14966 228 NPNVLIPRPE-TEHLVEAVLARLPENGRVWDLGTGSGAVAVTVALER-PDAFVRASDISPPALETARKNAADLG------ 299 (423)
T ss_pred CCCccCCCcc-HHHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcC------
Confidence 3455666665 455555554445667799999999999999999876 45699999999999999999987721
Q ss_pred CcEEEEEccchhhhHHHhhhccCCceeEEecCcccc
Q psy5757 85 GHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAES 120 (139)
Q Consensus 85 ~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~ 120 (139)
.+++++++|+.+.. .+ ..++||+|++||+..
T Consensus 300 ~rV~fi~gDl~e~~----l~-~~~~FDLIVSNPPYI 330 (423)
T PRK14966 300 ARVEFAHGSWFDTD----MP-SEGKWDIIVSNPPYI 330 (423)
T ss_pred CcEEEEEcchhccc----cc-cCCCccEEEECCCCC
Confidence 37899999964411 11 124799999999853
No 67
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.41 E-value=4.1e-13 Score=95.76 Aligned_cols=95 Identities=18% Similarity=0.123 Sum_probs=76.0
Q ss_pred CeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhccCCc
Q psy5757 31 SKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMKFDR 109 (139)
Q Consensus 31 ~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~ 109 (139)
++|||+|||+|..+..+++.. +.++++++|+|+++++.+++++.. ++ ..+++++..|+.+. + ..++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~-~~~~v~gid~s~~~~~~a~~~~~~~gl-----~~~i~~~~~d~~~~-~------~~~~ 67 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERH-PHLQLHGYTISPEQAEVGRERIRALGL-----QGRIRIFYRDSAKD-P------FPDT 67 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCC-----CcceEEEecccccC-C------CCCC
Confidence 479999999999999999987 356999999999999999999877 54 46789999885431 1 1257
Q ss_pred eeEEecCcccccccccee---eeeeeccCCCC
Q psy5757 110 YDFLPHAPAESWMNIPVC---INYTATMPEGS 138 (139)
Q Consensus 110 ~D~vi~~~~~~~~~~p~~---~~~~~~~p~g~ 138 (139)
||+|++...+|++.++.. ..++.++|+|.
T Consensus 68 fD~I~~~~~l~~~~~~~~~l~~~~~~LkpgG~ 99 (224)
T smart00828 68 YDLVFGFEVIHHIKDKMDLFSNISRHLKDGGH 99 (224)
T ss_pred CCEeehHHHHHhCCCHHHHHHHHHHHcCCCCE
Confidence 999999999999887533 33677888874
No 68
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=99.41 E-value=2.8e-12 Score=95.19 Aligned_cols=99 Identities=22% Similarity=0.318 Sum_probs=80.0
Q ss_pred hhcccc-cChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccc
Q psy5757 5 KIGAAI-GGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLL 82 (139)
Q Consensus 5 ~~~~~~-~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~ 82 (139)
++|+.| ..+.++.++++.+. +.++.+|||+|||+|.++..+++... +++++|+|+.+++.+++++.. +.
T Consensus 13 ~~GQnFL~d~~i~~~Iv~~~~--~~~~~~VLEIG~G~G~LT~~Ll~~~~---~V~avEiD~~li~~l~~~~~~~~~---- 83 (294)
T PTZ00338 13 KFGQHILKNPLVLDKIVEKAA--IKPTDTVLEIGPGTGNLTEKLLQLAK---KVIAIEIDPRMVAELKKRFQNSPL---- 83 (294)
T ss_pred CCCccccCCHHHHHHHHHhcC--CCCcCEEEEecCchHHHHHHHHHhCC---cEEEEECCHHHHHHHHHHHHhcCC----
Confidence 457744 67778888888775 57888999999999999999999764 899999999999999998876 32
Q ss_pred cCCcEEEEEccchhhhHHHhhhccCCceeEEecCccccc
Q psy5757 83 TDGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAESW 121 (139)
Q Consensus 83 ~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~ 121 (139)
.++++++++|+.+ . ....+|+|++|++++.
T Consensus 84 -~~~v~ii~~Dal~-~-------~~~~~d~VvaNlPY~I 113 (294)
T PTZ00338 84 -ASKLEVIEGDALK-T-------EFPYFDVCVANVPYQI 113 (294)
T ss_pred -CCcEEEEECCHhh-h-------cccccCEEEecCCccc
Confidence 3789999999654 1 1235899999998653
No 69
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.41 E-value=1.5e-12 Score=103.12 Aligned_cols=79 Identities=18% Similarity=0.314 Sum_probs=64.9
Q ss_pred CCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhccCC
Q psy5757 30 NSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMKFD 108 (139)
Q Consensus 30 ~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~ 108 (139)
+.+|||+|||+|..+..++... +.++++++|+|+.+++.|++++.. ++ ..+++++.+|+.+.+ +.+
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~-p~~~v~avDis~~al~~A~~N~~~~~l-----~~~v~~~~~D~~~~~-------~~~ 205 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCEL-PNANVIATDISLDAIEVAKSNAIKYEV-----TDRIQIIHSNWFENI-------EKQ 205 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCC-----ccceeeeecchhhhC-------cCC
Confidence 4689999999999999999887 467999999999999999999887 44 357899999964321 235
Q ss_pred ceeEEecCccccc
Q psy5757 109 RYDFLPHAPAESW 121 (139)
Q Consensus 109 ~~D~vi~~~~~~~ 121 (139)
+||+|++||++..
T Consensus 206 ~fDlIvsNPPYi~ 218 (506)
T PRK01544 206 KFDFIVSNPPYIS 218 (506)
T ss_pred CccEEEECCCCCC
Confidence 7999999998554
No 70
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.40 E-value=2.7e-12 Score=88.09 Aligned_cols=87 Identities=21% Similarity=0.174 Sum_probs=69.0
Q ss_pred HHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchh
Q psy5757 17 LTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIK 96 (139)
Q Consensus 17 ~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~ 96 (139)
.++.+.+. ..++.++||+|||+|.++..++++.. +++++|+++.+++.+++++.. ..+++++.+|+.+
T Consensus 3 ~~i~~~~~--~~~~~~vLEiG~G~G~lt~~l~~~~~---~v~~vE~~~~~~~~~~~~~~~-------~~~v~ii~~D~~~ 70 (169)
T smart00650 3 DKIVRAAN--LRPGDTVLEIGPGKGALTEELLERAA---RVTAIEIDPRLAPRLREKFAA-------ADNLTVIHGDALK 70 (169)
T ss_pred HHHHHhcC--CCCcCEEEEECCCccHHHHHHHhcCC---eEEEEECCHHHHHHHHHHhcc-------CCCEEEEECchhc
Confidence 44555554 46778999999999999999999843 999999999999999988754 3689999999765
Q ss_pred hhHHHhhhccCCceeEEecCccccc
Q psy5757 97 RIETVELMMKFDRYDFLPHAPAESW 121 (139)
Q Consensus 97 ~~~~~~~~~~~~~~D~vi~~~~~~~ 121 (139)
. . . +..++|.|++|+++|.
T Consensus 71 ~-~---~--~~~~~d~vi~n~Py~~ 89 (169)
T smart00650 71 F-D---L--PKLQPYKVVGNLPYNI 89 (169)
T ss_pred C-C---c--cccCCCEEEECCCccc
Confidence 2 1 1 2235899999999874
No 71
>PRK06922 hypothetical protein; Provisional
Probab=99.40 E-value=6.4e-13 Score=106.46 Aligned_cols=101 Identities=13% Similarity=0.221 Sum_probs=77.1
Q ss_pred CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccC
Q psy5757 28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKF 107 (139)
Q Consensus 28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 107 (139)
.++.+|||+|||+|..+..+++.. +.++++|+|+|+.+++.|+++..... .+++++++|+.+ ++ ...+.
T Consensus 417 ~~g~rVLDIGCGTG~ls~~LA~~~-P~~kVtGIDIS~~MLe~Ararl~~~g------~~ie~I~gDa~d-Lp---~~fed 485 (677)
T PRK06922 417 IKGDTIVDVGAGGGVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQNEG------RSWNVIKGDAIN-LS---SSFEK 485 (677)
T ss_pred cCCCEEEEeCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcC------CCeEEEEcchHh-Cc---cccCC
Confidence 467899999999999999999887 57799999999999999998865511 467888898654 22 11235
Q ss_pred CceeEEecCcccccccc-------------c---eeeeeeeccCCCCC
Q psy5757 108 DRYDFLPHAPAESWMNI-------------P---VCINYTATMPEGSY 139 (139)
Q Consensus 108 ~~~D~vi~~~~~~~~~~-------------p---~~~~~~~~~p~g~~ 139 (139)
++||+|++++++||+.+ + ....++.++|+|.+
T Consensus 486 eSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrL 533 (677)
T PRK06922 486 ESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRI 533 (677)
T ss_pred CCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEE
Confidence 67999999999997632 1 23337888998853
No 72
>KOG1540|consensus
Probab=99.40 E-value=1.5e-12 Score=93.40 Aligned_cols=103 Identities=17% Similarity=0.202 Sum_probs=84.0
Q ss_pred CCCCeEEEEcccCChhHHHHHHHcCCC-----ceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHH
Q psy5757 28 NENSKVLEIGSGSGYLTNMISELMNST-----GQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETV 101 (139)
Q Consensus 28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~-----~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~ 101 (139)
.+++++||++||||..+..+.+..+.. ++|+..|++|++++.++++..+ ++ ....++.|+.+|+.+ +
T Consensus 99 ~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l---~~~~~~~w~~~dAE~----L 171 (296)
T KOG1540|consen 99 GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPL---KASSRVEWVEGDAED----L 171 (296)
T ss_pred CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCC---CcCCceEEEeCCccc----C
Confidence 567899999999999999999998653 7999999999999999999866 44 233459999999655 2
Q ss_pred hhhccCCceeEEecCccccccccce---eeeeeeccCCCCC
Q psy5757 102 ELMMKFDRYDFLPHAPAESWMNIPV---CINYTATMPEGSY 139 (139)
Q Consensus 102 ~~~~~~~~~D~vi~~~~~~~~~~p~---~~~~~~~~p~g~~ 139 (139)
+.+++++|...+...+.-++++. ...|++++|+|.+
T Consensus 172 --pFdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf 210 (296)
T KOG1540|consen 172 --PFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRF 210 (296)
T ss_pred --CCCCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEE
Confidence 34578899998888877767664 5559999999964
No 73
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.40 E-value=6.7e-13 Score=96.49 Aligned_cols=102 Identities=17% Similarity=0.125 Sum_probs=75.6
Q ss_pred HHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccc
Q psy5757 16 ILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGM 94 (139)
Q Consensus 16 ~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~ 94 (139)
...+++.+.....++.+|||+|||+|.++..+++... .+++++|+|+.+++.|++++.. ++ ..++++..+|
T Consensus 106 t~~~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~g~--~~v~giDis~~~l~~A~~n~~~~~~-----~~~~~~~~~~- 177 (250)
T PRK00517 106 TRLCLEALEKLVLPGKTVLDVGCGSGILAIAAAKLGA--KKVLAVDIDPQAVEAARENAELNGV-----ELNVYLPQGD- 177 (250)
T ss_pred HHHHHHHHHhhcCCCCEEEEeCCcHHHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHcCC-----CceEEEccCC-
Confidence 4556666665567889999999999999988777543 2699999999999999999877 32 1333332222
Q ss_pred hhhhHHHhhhccCCceeEEecCccccccccceeeeeeeccCCCC
Q psy5757 95 IKRIETVELMMKFDRYDFLPHAPAESWMNIPVCINYTATMPEGS 138 (139)
Q Consensus 95 ~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p~~~~~~~~~p~g~ 138 (139)
.+||+|++|...+.+.......++.++|+|.
T Consensus 178 -------------~~fD~Vvani~~~~~~~l~~~~~~~LkpgG~ 208 (250)
T PRK00517 178 -------------LKADVIVANILANPLLELAPDLARLLKPGGR 208 (250)
T ss_pred -------------CCcCEEEEcCcHHHHHHHHHHHHHhcCCCcE
Confidence 1699999998766665555666788888885
No 74
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=4.8e-12 Score=87.20 Aligned_cols=96 Identities=19% Similarity=0.201 Sum_probs=74.9
Q ss_pred ccccChHHHHHHHHHhc-ccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCc
Q psy5757 8 AAIGGISAILTYLSIIQ-PHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGH 86 (139)
Q Consensus 8 ~~~~~~~~~~~~~~~l~-~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~ 86 (139)
|..+......+++.... +-.-.++.|+|+|||||.++...+..... .|+|+|+++++++.++++..+. ..+
T Consensus 23 QY~Tp~~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~lGa~--~V~~vdiD~~a~ei~r~N~~~l------~g~ 94 (198)
T COG2263 23 QYRTPAPLAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALLGAS--RVLAVDIDPEALEIARANAEEL------LGD 94 (198)
T ss_pred ecCCChHHHHHHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHhcCCc--EEEEEecCHHHHHHHHHHHHhh------CCc
Confidence 34445555555555553 22346788999999999999999998854 9999999999999999999872 268
Q ss_pred EEEEEccchhhhHHHhhhccCCceeEEecCcccc
Q psy5757 87 IKFVALGMIKRIETVELMMKFDRYDFLPHAPAES 120 (139)
Q Consensus 87 i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~ 120 (139)
+.+.+.|+.+ + ...+|.++.||+|.
T Consensus 95 v~f~~~dv~~-~--------~~~~dtvimNPPFG 119 (198)
T COG2263 95 VEFVVADVSD-F--------RGKFDTVIMNPPFG 119 (198)
T ss_pred eEEEEcchhh-c--------CCccceEEECCCCc
Confidence 9999999655 2 35689999999975
No 75
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.39 E-value=4.2e-12 Score=91.74 Aligned_cols=79 Identities=15% Similarity=0.306 Sum_probs=66.2
Q ss_pred CCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhccC
Q psy5757 29 ENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMKF 107 (139)
Q Consensus 29 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 107 (139)
.+.+|||+|||+|..+..++... +..+++++|+++.+++.+++++.. +. .+++++++|+.+.+ +.
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~------~~~~~~~~d~~~~~-------~~ 152 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKER-PDARVTAVDISPEALAVARKNAARLGL------DNVTFLQSDWFEPL-------PG 152 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCC------CeEEEEECchhccC-------cC
Confidence 44689999999999999999987 456999999999999999999887 44 67999999965421 24
Q ss_pred CceeEEecCccccc
Q psy5757 108 DRYDFLPHAPAESW 121 (139)
Q Consensus 108 ~~~D~vi~~~~~~~ 121 (139)
++||+|++|++++.
T Consensus 153 ~~fD~Vi~npPy~~ 166 (251)
T TIGR03534 153 GKFDLIVSNPPYIP 166 (251)
T ss_pred CceeEEEECCCCCc
Confidence 67999999999764
No 76
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.38 E-value=1.4e-12 Score=90.36 Aligned_cols=87 Identities=17% Similarity=0.290 Sum_probs=71.3
Q ss_pred HhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHH
Q psy5757 22 IIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETV 101 (139)
Q Consensus 22 ~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~ 101 (139)
.|.+.+.++.+|||+|||.|.+...|.+.. +++..|+|++++.+..+.++ .+.++++|+.+++..
T Consensus 6 ~I~~~I~pgsrVLDLGCGdG~LL~~L~~~k--~v~g~GvEid~~~v~~cv~r------------Gv~Viq~Dld~gL~~- 70 (193)
T PF07021_consen 6 IIAEWIEPGSRVLDLGCGDGELLAYLKDEK--QVDGYGVEIDPDNVAACVAR------------GVSVIQGDLDEGLAD- 70 (193)
T ss_pred HHHHHcCCCCEEEecCCCchHHHHHHHHhc--CCeEEEEecCHHHHHHHHHc------------CCCEEECCHHHhHhh-
Confidence 344456889999999999999999999864 45999999999887777553 567899998776653
Q ss_pred hhhccCCceeEEecCccccccccce
Q psy5757 102 ELMMKFDRYDFLPHAPAESWMNIPV 126 (139)
Q Consensus 102 ~~~~~~~~~D~vi~~~~~~~~~~p~ 126 (139)
.++++||+||.+.+++.+..|.
T Consensus 71 ---f~d~sFD~VIlsqtLQ~~~~P~ 92 (193)
T PF07021_consen 71 ---FPDQSFDYVILSQTLQAVRRPD 92 (193)
T ss_pred ---CCCCCccEEehHhHHHhHhHHH
Confidence 4578899999999999988884
No 77
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.38 E-value=3.3e-12 Score=93.98 Aligned_cols=97 Identities=15% Similarity=0.234 Sum_probs=72.9
Q ss_pred CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccC
Q psy5757 28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKF 107 (139)
Q Consensus 28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 107 (139)
..+.+|||+|||.|.++..+++.. |..+++.+|+|..+++.|++++..+. .++..+..+|..+.. .
T Consensus 157 ~~~~~vlDlGCG~Gvlg~~la~~~-p~~~vtmvDvn~~Av~~ar~Nl~~N~-----~~~~~v~~s~~~~~v--------~ 222 (300)
T COG2813 157 DLGGKVLDLGCGYGVLGLVLAKKS-PQAKLTLVDVNARAVESARKNLAANG-----VENTEVWASNLYEPV--------E 222 (300)
T ss_pred cCCCcEEEeCCCccHHHHHHHHhC-CCCeEEEEecCHHHHHHHHHhHHHcC-----CCccEEEEecccccc--------c
Confidence 344599999999999999999999 48899999999999999999998832 255456667743311 2
Q ss_pred CceeEEecCccccccccc--------eeeeeeeccCCCC
Q psy5757 108 DRYDFLPHAPAESWMNIP--------VCINYTATMPEGS 138 (139)
Q Consensus 108 ~~~D~vi~~~~~~~~~~p--------~~~~~~~~~p~g~ 138 (139)
++||+|+|||+||-=.+- .+.....++++|+
T Consensus 223 ~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGe 261 (300)
T COG2813 223 GKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGE 261 (300)
T ss_pred ccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCE
Confidence 489999999999942221 2233566666665
No 78
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.38 E-value=3.6e-12 Score=94.25 Aligned_cols=77 Identities=16% Similarity=0.354 Sum_probs=63.7
Q ss_pred CeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhccCCc
Q psy5757 31 SKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMKFDR 109 (139)
Q Consensus 31 ~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~ 109 (139)
.+|||+|||+|..+..++... +..+++++|+|+.+++.|++++.. +. ..+++++.+|+.+.+ +..+
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~-~~~~v~avDis~~al~~a~~n~~~~~~-----~~~v~~~~~d~~~~~-------~~~~ 182 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEF-PNAEVIAVDISPDALAVAEENAEKNQL-----EHRVEFIQSNLFEPL-------AGQK 182 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEECchhccC-------cCCC
Confidence 689999999999999999987 456999999999999999999987 43 235999999965422 1237
Q ss_pred eeEEecCcccc
Q psy5757 110 YDFLPHAPAES 120 (139)
Q Consensus 110 ~D~vi~~~~~~ 120 (139)
||+|++||+..
T Consensus 183 fDlIvsNPPyi 193 (284)
T TIGR00536 183 IDIIVSNPPYI 193 (284)
T ss_pred ccEEEECCCCC
Confidence 99999999854
No 79
>PRK06202 hypothetical protein; Provisional
Probab=99.38 E-value=1.4e-12 Score=93.75 Aligned_cols=84 Identities=17% Similarity=0.180 Sum_probs=64.5
Q ss_pred CCCCeEEEEcccCChhHHHHHHHc---CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhh
Q psy5757 28 NENSKVLEIGSGSGYLTNMISELM---NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELM 104 (139)
Q Consensus 28 ~~~~~iLdiG~G~G~~~~~l~~~~---~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 104 (139)
.++.+|||+|||+|..+..+++.. ++..+++|+|+++++++.|+++... .++++...+..+ +.
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~--------~~~~~~~~~~~~-l~----- 124 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR--------PGVTFRQAVSDE-LV----- 124 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc--------CCCeEEEEeccc-cc-----
Confidence 466799999999999999998754 2345999999999999999887644 345555554322 21
Q ss_pred ccCCceeEEecCccccccccc
Q psy5757 105 MKFDRYDFLPHAPAESWMNIP 125 (139)
Q Consensus 105 ~~~~~~D~vi~~~~~~~~~~p 125 (139)
...++||+|+++.++||+.++
T Consensus 125 ~~~~~fD~V~~~~~lhh~~d~ 145 (232)
T PRK06202 125 AEGERFDVVTSNHFLHHLDDA 145 (232)
T ss_pred ccCCCccEEEECCeeecCChH
Confidence 134689999999999999875
No 80
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.38 E-value=2.4e-12 Score=90.30 Aligned_cols=114 Identities=18% Similarity=0.179 Sum_probs=76.4
Q ss_pred ccChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEE
Q psy5757 10 IGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIK 88 (139)
Q Consensus 10 ~~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~ 88 (139)
++.+.....+...+. ..++.+|||+|||+|.++..+++.. +.++++++|+++.+++.+++++.. +. .+++
T Consensus 23 ~t~~~v~~~l~~~l~--~~~~~~VLDiG~G~G~~~~~la~~~-~~~~V~~vD~s~~~~~~a~~n~~~~~~------~~v~ 93 (196)
T PRK07402 23 LTKREVRLLLISQLR--LEPDSVLWDIGAGTGTIPVEAGLLC-PKGRVIAIERDEEVVNLIRRNCDRFGV------KNVE 93 (196)
T ss_pred CCHHHHHHHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCC------CCeE
Confidence 344443334555553 5678899999999999999998765 456999999999999999999987 43 6899
Q ss_pred EEEccchhhhHHHhhhccCCceeEEecCccccccccceeeeeeeccCCCC
Q psy5757 89 FVALGMIKRIETVELMMKFDRYDFLPHAPAESWMNIPVCINYTATMPEGS 138 (139)
Q Consensus 89 ~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p~~~~~~~~~p~g~ 138 (139)
++.+|+.+.+..+ ...+|.++.... .-+.......++.++|+|.
T Consensus 94 ~~~~d~~~~~~~~-----~~~~d~v~~~~~-~~~~~~l~~~~~~LkpgG~ 137 (196)
T PRK07402 94 VIEGSAPECLAQL-----APAPDRVCIEGG-RPIKEILQAVWQYLKPGGR 137 (196)
T ss_pred EEECchHHHHhhC-----CCCCCEEEEECC-cCHHHHHHHHHHhcCCCeE
Confidence 9999975533221 122455544321 1112333444566777774
No 81
>PHA03411 putative methyltransferase; Provisional
Probab=99.38 E-value=5.1e-12 Score=92.34 Aligned_cols=97 Identities=14% Similarity=0.231 Sum_probs=73.8
Q ss_pred hcccccChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCC
Q psy5757 6 IGAAIGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDG 85 (139)
Q Consensus 6 ~~~~~~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~ 85 (139)
.|+++++..+..... +. .....+|||+|||+|.++..++.+.+ ..+++++|+++.+++.+++++ +
T Consensus 45 ~G~FfTP~~i~~~f~--~~--~~~~grVLDLGcGsGilsl~la~r~~-~~~V~gVDisp~al~~Ar~n~----------~ 109 (279)
T PHA03411 45 SGAFFTPEGLAWDFT--ID--AHCTGKVLDLCAGIGRLSFCMLHRCK-PEKIVCVELNPEFARIGKRLL----------P 109 (279)
T ss_pred ceeEcCCHHHHHHHH--hc--cccCCeEEEcCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhC----------c
Confidence 477888887654432 22 34457999999999999999888753 359999999999999998763 4
Q ss_pred cEEEEEccchhhhHHHhhhccCCceeEEecCcccccccc
Q psy5757 86 HIKFVALGMIKRIETVELMMKFDRYDFLPHAPAESWMNI 124 (139)
Q Consensus 86 ~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~ 124 (139)
+++++++|+.+.. ..++||+|++||++++...
T Consensus 110 ~v~~v~~D~~e~~-------~~~kFDlIIsNPPF~~l~~ 141 (279)
T PHA03411 110 EAEWITSDVFEFE-------SNEKFDVVISNPPFGKINT 141 (279)
T ss_pred CCEEEECchhhhc-------ccCCCcEEEEcCCccccCc
Confidence 6788999965521 1357999999999998653
No 82
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.38 E-value=2e-12 Score=95.79 Aligned_cols=94 Identities=18% Similarity=0.186 Sum_probs=72.8
Q ss_pred CCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccCC
Q psy5757 29 ENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKFD 108 (139)
Q Consensus 29 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~ 108 (139)
++.+|||+|||+|..+..+++... +|+++|+|+.+++.++++..... -++++...|+.+ .. ..+
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~g~---~V~avD~s~~ai~~~~~~~~~~~------l~v~~~~~D~~~-~~------~~~ 183 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALLGF---DVTAVDINQQSLENLQEIAEKEN------LNIRTGLYDINS-AS------IQE 183 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHHcC------CceEEEEechhc-cc------ccC
Confidence 345999999999999999998753 99999999999999999887621 267778787543 11 145
Q ss_pred ceeEEecCccccccccc-----eeeeeeeccCCCC
Q psy5757 109 RYDFLPHAPAESWMNIP-----VCINYTATMPEGS 138 (139)
Q Consensus 109 ~~D~vi~~~~~~~~~~p-----~~~~~~~~~p~g~ 138 (139)
+||+|+++.++|++..+ ....++.++|+|.
T Consensus 184 ~fD~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~ 218 (287)
T PRK12335 184 EYDFILSTVVLMFLNRERIPAIIKNMQEHTNPGGY 218 (287)
T ss_pred CccEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcE
Confidence 79999999999987632 3444777888884
No 83
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.37 E-value=2.3e-12 Score=91.40 Aligned_cols=97 Identities=13% Similarity=0.227 Sum_probs=72.7
Q ss_pred CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhhh
Q psy5757 27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVELM 104 (139)
Q Consensus 27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~ 104 (139)
++++.+|||+|||+|.++..+++..++.++|+++|+++ + .. .++++++++|+.+. +..+...
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~--------~~-------~~~v~~i~~D~~~~~~~~~i~~~ 112 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M--------DP-------IVGVDFLQGDFRDELVLKALLER 112 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c--------cC-------CCCcEEEecCCCChHHHHHHHHH
Confidence 47788999999999999999999987677999999997 1 11 25788999998762 2222223
Q ss_pred ccCCceeEEecCccccccccc--------------eeeeeeeccCCCCC
Q psy5757 105 MKFDRYDFLPHAPAESWMNIP--------------VCINYTATMPEGSY 139 (139)
Q Consensus 105 ~~~~~~D~vi~~~~~~~~~~p--------------~~~~~~~~~p~g~~ 139 (139)
...++||+|+++.+.+|...| ....++.++|+|.+
T Consensus 113 ~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~ 161 (209)
T PRK11188 113 VGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSF 161 (209)
T ss_pred hCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEE
Confidence 345789999999987775443 24457788888863
No 84
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=99.37 E-value=4.7e-12 Score=93.14 Aligned_cols=97 Identities=16% Similarity=0.142 Sum_probs=74.9
Q ss_pred hhcc-cccChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhcccccc
Q psy5757 5 KIGA-AIGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLT 83 (139)
Q Consensus 5 ~~~~-~~~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~ 83 (139)
.+|+ ++..+.++..+++.+. +.++.+|||+|||+|.++..+++... +++++|+++.+++.+++++..
T Consensus 19 ~~gq~fl~~~~i~~~i~~~l~--~~~~~~VLEiG~G~G~lt~~L~~~~~---~v~avE~d~~~~~~~~~~~~~------- 86 (272)
T PRK00274 19 SLGQNFLIDENILDKIVDAAG--PQPGDNVLEIGPGLGALTEPLLERAA---KVTAVEIDRDLAPILAETFAE------- 86 (272)
T ss_pred ccCcCcCCCHHHHHHHHHhcC--CCCcCeEEEeCCCccHHHHHHHHhCC---cEEEEECCHHHHHHHHHhhcc-------
Confidence 4566 4456667777777774 57788999999999999999999974 899999999999999887533
Q ss_pred CCcEEEEEccchhhhHHHhhhccCCceeEEecCcccc
Q psy5757 84 DGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAES 120 (139)
Q Consensus 84 ~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~ 120 (139)
.+++++++|+.+ +. .. .-..|.|++|++++
T Consensus 87 -~~v~~i~~D~~~-~~---~~--~~~~~~vv~NlPY~ 116 (272)
T PRK00274 87 -DNLTIIEGDALK-VD---LS--ELQPLKVVANLPYN 116 (272)
T ss_pred -CceEEEEChhhc-CC---HH--HcCcceEEEeCCcc
Confidence 689999999765 21 11 10158999999854
No 85
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.37 E-value=6.1e-12 Score=90.03 Aligned_cols=99 Identities=18% Similarity=0.284 Sum_probs=77.5
Q ss_pred CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757 28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMK 106 (139)
Q Consensus 28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 106 (139)
.++.+|||+|||+|..+..+++..++..+++++|+++.+++.+++++.. +. ..+++++.+|+.+ +. .+
T Consensus 50 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~-----~~~~~~~~~d~~~-~~-----~~ 118 (239)
T PRK00216 50 RPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGL-----SGNVEFVQGDAEA-LP-----FP 118 (239)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhccccc-----ccCeEEEeccccc-CC-----CC
Confidence 4678999999999999999999885356999999999999999998765 33 3578889888654 11 23
Q ss_pred CCceeEEecCccccccccceeee---eeeccCCC
Q psy5757 107 FDRYDFLPHAPAESWMNIPVCIN---YTATMPEG 137 (139)
Q Consensus 107 ~~~~D~vi~~~~~~~~~~p~~~~---~~~~~p~g 137 (139)
.++||+|+++..+|++.++..+. +..++|+|
T Consensus 119 ~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG 152 (239)
T PRK00216 119 DNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGG 152 (239)
T ss_pred CCCccEEEEecccccCCCHHHHHHHHHHhccCCc
Confidence 45799999999999888765332 55666666
No 86
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.36 E-value=4.9e-12 Score=96.59 Aligned_cols=100 Identities=17% Similarity=0.209 Sum_probs=80.5
Q ss_pred CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757 28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMK 106 (139)
Q Consensus 28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 106 (139)
..+..+||||||+|..+..+|+.. |...++|+|+++.++..+.+++.. ++ .|+.++.+|+..... ..+
T Consensus 121 ~~~p~vLEIGcGsG~~ll~lA~~~-P~~~~iGIEI~~~~i~~a~~ka~~~gL------~NV~~i~~DA~~ll~----~~~ 189 (390)
T PRK14121 121 NQEKILIEIGFGSGRHLLYQAKNN-PNKLFIGIEIHTPSIEQVLKQIELLNL------KNLLIINYDARLLLE----LLP 189 (390)
T ss_pred CCCCeEEEEcCcccHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCC------CcEEEEECCHHHhhh----hCC
Confidence 456789999999999999999998 577999999999999999999887 54 789999999755222 234
Q ss_pred CCceeEEecCccccccccc---------eeeeeeeccCCCC
Q psy5757 107 FDRYDFLPHAPAESWMNIP---------VCINYTATMPEGS 138 (139)
Q Consensus 107 ~~~~D~vi~~~~~~~~~~p---------~~~~~~~~~p~g~ 138 (139)
.+++|.|+++.+..|...+ .....+.++|+|.
T Consensus 190 ~~s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~ 230 (390)
T PRK14121 190 SNSVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGT 230 (390)
T ss_pred CCceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcE
Confidence 6789999999887776443 3334677888885
No 87
>KOG1661|consensus
Probab=99.36 E-value=2.5e-12 Score=89.82 Aligned_cols=115 Identities=30% Similarity=0.409 Sum_probs=93.6
Q ss_pred hhhhcccccChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCce-EEEEeCCHHHHHHHHHHHHhhc---
Q psy5757 3 LVKIGAAIGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQ-VIGIEHVPQLVNSSIQNILHSN--- 78 (139)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~-v~~~d~~~~~~~~a~~~~~~~~--- 78 (139)
.++++..+++|++.+.+.+.|.+++++|.+.||+|+|||+++..+++.....+. ++|+|.-++.++.+++++....
T Consensus 56 ~~G~n~~iSAp~mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~ 135 (237)
T KOG1661|consen 56 KIGYNLTISAPHMHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTS 135 (237)
T ss_pred ccCCceEEcchHHHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCc
Confidence 456788999999999999999999999999999999999999999987765444 4999999999999999987733
Q ss_pred --cccccCCcEEEEEccchhhhHHHhhhccCCceeEEecCccccccc
Q psy5757 79 --ARLLTDGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAESWMN 123 (139)
Q Consensus 79 --~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~ 123 (139)
..-+...++.++++|...++. +..+||.|.+...-..++
T Consensus 136 e~~~~~~~~~l~ivvGDgr~g~~------e~a~YDaIhvGAaa~~~p 176 (237)
T KOG1661|consen 136 ESSSKLKRGELSIVVGDGRKGYA------EQAPYDAIHVGAAASELP 176 (237)
T ss_pred hhhhhhccCceEEEeCCccccCC------ccCCcceEEEccCccccH
Confidence 122445688999999887554 356799999887644433
No 88
>PRK14967 putative methyltransferase; Provisional
Probab=99.35 E-value=5.5e-12 Score=90.19 Aligned_cols=81 Identities=20% Similarity=0.260 Sum_probs=63.7
Q ss_pred CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757 27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMK 106 (139)
Q Consensus 27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 106 (139)
+.++.+|||+|||+|.++..+++.. ..+++++|+++.+++.+++++.... .+++++.+|+.+. .+
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~~--~~~v~~vD~s~~~l~~a~~n~~~~~------~~~~~~~~d~~~~-------~~ 98 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAAG--AGSVTAVDISRRAVRSARLNALLAG------VDVDVRRGDWARA-------VE 98 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHcC--CCeEEEEECCHHHHHHHHHHHHHhC------CeeEEEECchhhh-------cc
Confidence 4677899999999999999998863 2389999999999999999987611 2578888885441 12
Q ss_pred CCceeEEecCcccccc
Q psy5757 107 FDRYDFLPHAPAESWM 122 (139)
Q Consensus 107 ~~~~D~vi~~~~~~~~ 122 (139)
.++||+|++|++++..
T Consensus 99 ~~~fD~Vi~npPy~~~ 114 (223)
T PRK14967 99 FRPFDVVVSNPPYVPA 114 (223)
T ss_pred CCCeeEEEECCCCCCC
Confidence 4579999999886543
No 89
>PRK05785 hypothetical protein; Provisional
Probab=99.35 E-value=6.1e-12 Score=90.26 Aligned_cols=97 Identities=11% Similarity=0.080 Sum_probs=70.4
Q ss_pred HHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh
Q psy5757 18 TYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR 97 (139)
Q Consensus 18 ~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~ 97 (139)
.+.+.+.....++.+|||+|||||..+..+++.. ..+++|+|+|++|++.|++.. .++++|+.+
T Consensus 40 ~~~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~~-------------~~~~~d~~~- 103 (226)
T PRK05785 40 ELVKTILKYCGRPKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVAD-------------DKVVGSFEA- 103 (226)
T ss_pred HHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhcc-------------ceEEechhh-
Confidence 3444554333457899999999999999999886 239999999999999987531 235677433
Q ss_pred hHHHhhhccCCceeEEecCcccccccccee---eeeeeccC
Q psy5757 98 IETVELMMKFDRYDFLPHAPAESWMNIPVC---INYTATMP 135 (139)
Q Consensus 98 ~~~~~~~~~~~~~D~vi~~~~~~~~~~p~~---~~~~~~~p 135 (139)
+ +.+.++||+|+++.++|++.++.. ..++.++|
T Consensus 104 ---l--p~~d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp 139 (226)
T PRK05785 104 ---L--PFRDKSFDVVMSSFALHASDNIEKVIAEFTRVSRK 139 (226)
T ss_pred ---C--CCCCCCEEEEEecChhhccCCHHHHHHHHHHHhcC
Confidence 2 234678999999999999988642 22555555
No 90
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.34 E-value=1.9e-12 Score=90.67 Aligned_cols=84 Identities=17% Similarity=0.222 Sum_probs=64.0
Q ss_pred cCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757 26 HLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMM 105 (139)
Q Consensus 26 ~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 105 (139)
.++++.+|||+|||+|.++..+++... ..++++|+++++++.+++ .+++++++|+.+.+. ..
T Consensus 10 ~i~~~~~iLDiGcG~G~~~~~l~~~~~--~~~~giD~s~~~i~~a~~------------~~~~~~~~d~~~~l~----~~ 71 (194)
T TIGR02081 10 LIPPGSRVLDLGCGDGELLALLRDEKQ--VRGYGIEIDQDGVLACVA------------RGVNVIQGDLDEGLE----AF 71 (194)
T ss_pred hcCCCCEEEEeCCCCCHHHHHHHhccC--CcEEEEeCCHHHHHHHHH------------cCCeEEEEEhhhccc----cc
Confidence 456778999999999999999887653 378999999999888753 245677787543221 12
Q ss_pred cCCceeEEecCcccccccccee
Q psy5757 106 KFDRYDFLPHAPAESWMNIPVC 127 (139)
Q Consensus 106 ~~~~~D~vi~~~~~~~~~~p~~ 127 (139)
+.++||+|+++.++||+.+|..
T Consensus 72 ~~~sfD~Vi~~~~l~~~~d~~~ 93 (194)
T TIGR02081 72 PDKSFDYVILSQTLQATRNPEE 93 (194)
T ss_pred CCCCcCEEEEhhHhHcCcCHHH
Confidence 3467999999999999988743
No 91
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.34 E-value=4.1e-12 Score=97.49 Aligned_cols=93 Identities=15% Similarity=0.158 Sum_probs=73.5
Q ss_pred CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757 27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMK 106 (139)
Q Consensus 27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 106 (139)
++++.+|||+|||+|.++..+++..+ ++|+++|+|+++++.|+++... .++++...|..+ +
T Consensus 165 l~~g~rVLDIGcG~G~~a~~la~~~g--~~V~giDlS~~~l~~A~~~~~~--------l~v~~~~~D~~~----l----- 225 (383)
T PRK11705 165 LKPGMRVLDIGCGWGGLARYAAEHYG--VSVVGVTISAEQQKLAQERCAG--------LPVEIRLQDYRD----L----- 225 (383)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHhcc--------CeEEEEECchhh----c-----
Confidence 57889999999999999999998764 4999999999999999988743 247777777432 1
Q ss_pred CCceeEEecCcccccccc-----ceeeeeeeccCCCC
Q psy5757 107 FDRYDFLPHAPAESWMNI-----PVCINYTATMPEGS 138 (139)
Q Consensus 107 ~~~~D~vi~~~~~~~~~~-----p~~~~~~~~~p~g~ 138 (139)
.++||.|++...++|+.. .....++.++|+|.
T Consensus 226 ~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~ 262 (383)
T PRK11705 226 NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGL 262 (383)
T ss_pred CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcE
Confidence 357999999999988743 23444777888874
No 92
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.34 E-value=1.1e-11 Score=88.22 Aligned_cols=90 Identities=14% Similarity=0.222 Sum_probs=68.8
Q ss_pred HHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchh
Q psy5757 18 TYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIK 96 (139)
Q Consensus 18 ~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~ 96 (139)
.+.+++.....++.+|||+|||+|.++..++.... +++|+|++++++..|++++.. .. ..++++.++|+.+
T Consensus 44 ~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~---~v~gvD~s~~~i~~a~~~~~~~~~-----~~~i~~~~~d~~~ 115 (219)
T TIGR02021 44 KLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRGA---IVKAVDISEQMVQMARNRAQGRDV-----AGNVEFEVNDLLS 115 (219)
T ss_pred HHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcCC-----CCceEEEECChhh
Confidence 34445532135678999999999999999988643 899999999999999999876 32 2478999998433
Q ss_pred hhHHHhhhccCCceeEEecCcccccccc
Q psy5757 97 RIETVELMMKFDRYDFLPHAPAESWMNI 124 (139)
Q Consensus 97 ~~~~~~~~~~~~~~D~vi~~~~~~~~~~ 124 (139)
+ + ++||+|++..++++++.
T Consensus 116 ----~----~-~~fD~ii~~~~l~~~~~ 134 (219)
T TIGR02021 116 ----L----C-GEFDIVVCMDVLIHYPA 134 (219)
T ss_pred ----C----C-CCcCEEEEhhHHHhCCH
Confidence 1 1 67999999888777643
No 93
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.34 E-value=2.7e-11 Score=85.30 Aligned_cols=89 Identities=15% Similarity=0.143 Sum_probs=67.4
Q ss_pred HHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchh
Q psy5757 18 TYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIK 96 (139)
Q Consensus 18 ~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~ 96 (139)
.+.+++.. ..++.++||+|||+|.++..++.+.. .+++++|+++.+++.++++++. +. .+++++.+|+.+
T Consensus 43 ~l~~~l~~-~~~~~~vLDl~~GsG~l~l~~lsr~a--~~V~~vE~~~~a~~~a~~Nl~~~~~------~~v~~~~~D~~~ 113 (199)
T PRK10909 43 TLFNWLAP-VIVDARCLDCFAGSGALGLEALSRYA--AGATLLEMDRAVAQQLIKNLATLKA------GNARVVNTNALS 113 (199)
T ss_pred HHHHHHhh-hcCCCEEEEcCCCccHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHhCC------CcEEEEEchHHH
Confidence 34454432 24568999999999999986554442 3999999999999999999988 44 689999999765
Q ss_pred hhHHHhhhccCCceeEEecCcccc
Q psy5757 97 RIETVELMMKFDRYDFLPHAPAES 120 (139)
Q Consensus 97 ~~~~~~~~~~~~~~D~vi~~~~~~ 120 (139)
.+.. ...+||+|+++|+++
T Consensus 114 ~l~~-----~~~~fDlV~~DPPy~ 132 (199)
T PRK10909 114 FLAQ-----PGTPHNVVFVDPPFR 132 (199)
T ss_pred HHhh-----cCCCceEEEECCCCC
Confidence 3321 124699999999954
No 94
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.33 E-value=3.1e-12 Score=100.53 Aligned_cols=106 Identities=18% Similarity=0.193 Sum_probs=78.1
Q ss_pred HHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchh
Q psy5757 17 LTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIK 96 (139)
Q Consensus 17 ~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~ 96 (139)
..+++.+. ..++.+|||+|||+|..+..+++... +++++|+++.+++.+++.... .++++++++|+.+
T Consensus 27 ~~il~~l~--~~~~~~vLDlGcG~G~~~~~la~~~~---~v~giD~s~~~l~~a~~~~~~-------~~~i~~~~~d~~~ 94 (475)
T PLN02336 27 PEILSLLP--PYEGKSVLELGAGIGRFTGELAKKAG---QVIALDFIESVIKKNESINGH-------YKNVKFMCADVTS 94 (475)
T ss_pred hHHHhhcC--ccCCCEEEEeCCCcCHHHHHHHhhCC---EEEEEeCCHHHHHHHHHHhcc-------CCceEEEEecccc
Confidence 34444443 24567999999999999999999864 899999999999887653222 3688999999653
Q ss_pred hhHHHhhhccCCceeEEecCccccccccc-----eeeeeeeccCCCC
Q psy5757 97 RIETVELMMKFDRYDFLPHAPAESWMNIP-----VCINYTATMPEGS 138 (139)
Q Consensus 97 ~~~~~~~~~~~~~~D~vi~~~~~~~~~~p-----~~~~~~~~~p~g~ 138 (139)
. . .+.+.++||+|+++.++||+.++ ....++.++|+|.
T Consensus 95 ~--~--~~~~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~ 137 (475)
T PLN02336 95 P--D--LNISDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGY 137 (475)
T ss_pred c--c--cCCCCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeE
Confidence 1 1 12235689999999999998764 2334777888884
No 95
>PRK04266 fibrillarin; Provisional
Probab=99.33 E-value=4.2e-12 Score=91.05 Aligned_cols=102 Identities=18% Similarity=0.193 Sum_probs=73.0
Q ss_pred CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757 27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMK 106 (139)
Q Consensus 27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 106 (139)
++++.+|||+|||+|..+..+++..+ .++|+++|+++++++.+.++++. ..|+.++.+|..+..... . -
T Consensus 70 i~~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~-------~~nv~~i~~D~~~~~~~~--~-l 138 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEE-------RKNIIPILADARKPERYA--H-V 138 (226)
T ss_pred CCCCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhh-------cCCcEEEECCCCCcchhh--h-c
Confidence 57889999999999999999999885 66999999999999988777654 257888999865411101 1 1
Q ss_pred CCceeEEecCccccccc-cceeeeeeeccCCCCC
Q psy5757 107 FDRYDFLPHAPAESWMN-IPVCINYTATMPEGSY 139 (139)
Q Consensus 107 ~~~~D~vi~~~~~~~~~-~p~~~~~~~~~p~g~~ 139 (139)
.++||+|++..+..|.. ......++.++|+|.+
T Consensus 139 ~~~~D~i~~d~~~p~~~~~~L~~~~r~LKpGG~l 172 (226)
T PRK04266 139 VEKVDVIYQDVAQPNQAEIAIDNAEFFLKDGGYL 172 (226)
T ss_pred cccCCEEEECCCChhHHHHHHHHHHHhcCCCcEE
Confidence 24599999764422211 1134457788888853
No 96
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=99.32 E-value=1.7e-11 Score=89.27 Aligned_cols=97 Identities=20% Similarity=0.206 Sum_probs=76.8
Q ss_pred hhcc-cccChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhcccccc
Q psy5757 5 KIGA-AIGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLT 83 (139)
Q Consensus 5 ~~~~-~~~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~ 83 (139)
.+|+ ++..+.+...+++.+. ..++.+|||+|||+|.++..+++... +++++|+++.+++.+++++..
T Consensus 6 ~~gq~fl~d~~i~~~i~~~~~--~~~~~~VLEiG~G~G~lt~~L~~~~~---~v~~iE~d~~~~~~l~~~~~~------- 73 (253)
T TIGR00755 6 SLGQNFLIDESVIQKIVEAAN--VLEGDVVLEIGPGLGALTEPLLKRAK---KVTAIEIDPRLAEILRKLLSL------- 73 (253)
T ss_pred CCCCccCCCHHHHHHHHHhcC--CCCcCEEEEeCCCCCHHHHHHHHhCC---cEEEEECCHHHHHHHHHHhCc-------
Confidence 4677 4466777788888775 56788999999999999999999885 799999999999999887643
Q ss_pred CCcEEEEEccchhhhHHHhhhccCCcee---EEecCccccc
Q psy5757 84 DGHIKFVALGMIKRIETVELMMKFDRYD---FLPHAPAESW 121 (139)
Q Consensus 84 ~~~i~~~~~d~~~~~~~~~~~~~~~~~D---~vi~~~~~~~ 121 (139)
..+++++++|+.+. . ...+| +|++|.++|.
T Consensus 74 ~~~v~v~~~D~~~~-~-------~~~~d~~~~vvsNlPy~i 106 (253)
T TIGR00755 74 YERLEVIEGDALKV-D-------LPDFPKQLKVVSNLPYNI 106 (253)
T ss_pred CCcEEEEECchhcC-C-------hhHcCCcceEEEcCChhh
Confidence 36899999997551 1 11345 9999999774
No 97
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.32 E-value=2e-11 Score=95.35 Aligned_cols=82 Identities=17% Similarity=0.283 Sum_probs=66.8
Q ss_pred CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757 27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMM 105 (139)
Q Consensus 27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 105 (139)
..++.+|||+|||+|.++..+++... +++++|+|+.+++.|+++++. +. .+++++.+|+.+.+.... .
T Consensus 295 ~~~~~~VLDlgcGtG~~sl~la~~~~---~V~gvD~s~~al~~A~~n~~~~~~------~~v~~~~~d~~~~l~~~~--~ 363 (443)
T PRK13168 295 PQPGDRVLDLFCGLGNFTLPLARQAA---EVVGVEGVEAMVERARENARRNGL------DNVTFYHANLEEDFTDQP--W 363 (443)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHHcCC------CceEEEEeChHHhhhhhh--h
Confidence 35678999999999999999999874 999999999999999999987 44 689999999765433211 1
Q ss_pred cCCceeEEecCccc
Q psy5757 106 KFDRYDFLPHAPAE 119 (139)
Q Consensus 106 ~~~~~D~vi~~~~~ 119 (139)
...+||+|+++|+.
T Consensus 364 ~~~~fD~Vi~dPPr 377 (443)
T PRK13168 364 ALGGFDKVLLDPPR 377 (443)
T ss_pred hcCCCCEEEECcCC
Confidence 23569999999883
No 98
>PRK14968 putative methyltransferase; Provisional
Probab=99.31 E-value=1.3e-11 Score=85.39 Aligned_cols=90 Identities=17% Similarity=0.258 Sum_probs=67.6
Q ss_pred HHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccc
Q psy5757 16 ILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGM 94 (139)
Q Consensus 16 ~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~ 94 (139)
...+.+.+. ..++.++||+|||+|.++..+++.. .+++++|+++++++.+++++.. +. ...++.+++.|.
T Consensus 12 ~~~l~~~~~--~~~~~~vLd~G~G~G~~~~~l~~~~---~~v~~~D~s~~~~~~a~~~~~~~~~----~~~~~~~~~~d~ 82 (188)
T PRK14968 12 SFLLAENAV--DKKGDRVLEVGTGSGIVAIVAAKNG---KKVVGVDINPYAVECAKCNAKLNNI----RNNGVEVIRSDL 82 (188)
T ss_pred HHHHHHhhh--ccCCCEEEEEccccCHHHHHHHhhc---ceEEEEECCHHHHHHHHHHHHHcCC----CCcceEEEeccc
Confidence 344555554 3677899999999999999999983 3999999999999999999876 43 111288888886
Q ss_pred hhhhHHHhhhccCCceeEEecCccccc
Q psy5757 95 IKRIETVELMMKFDRYDFLPHAPAESW 121 (139)
Q Consensus 95 ~~~~~~~~~~~~~~~~D~vi~~~~~~~ 121 (139)
.+.+ ...+||+|++|+++..
T Consensus 83 ~~~~-------~~~~~d~vi~n~p~~~ 102 (188)
T PRK14968 83 FEPF-------RGDKFDVILFNPPYLP 102 (188)
T ss_pred cccc-------cccCceEEEECCCcCC
Confidence 5422 1237999999988654
No 99
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.31 E-value=1.5e-11 Score=87.18 Aligned_cols=98 Identities=16% Similarity=0.233 Sum_probs=76.4
Q ss_pred CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccC
Q psy5757 28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKF 107 (139)
Q Consensus 28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 107 (139)
.++.+|||+|||+|..+..+++..+..++++++|+++.+++.++++... ..+++++.+|+.+ .. .+.
T Consensus 38 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~-------~~~i~~~~~d~~~-~~-----~~~ 104 (223)
T TIGR01934 38 FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSEL-------PLNIEFIQADAEA-LP-----FED 104 (223)
T ss_pred CCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhcc-------CCCceEEecchhc-CC-----CCC
Confidence 4678999999999999999999885336999999999999999887642 2578888888654 11 234
Q ss_pred CceeEEecCccccccccceee---eeeeccCCCC
Q psy5757 108 DRYDFLPHAPAESWMNIPVCI---NYTATMPEGS 138 (139)
Q Consensus 108 ~~~D~vi~~~~~~~~~~p~~~---~~~~~~p~g~ 138 (139)
++||+|+++..+|++.++... ....++|+|.
T Consensus 105 ~~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~ 138 (223)
T TIGR01934 105 NSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGR 138 (223)
T ss_pred CcEEEEEEeeeeCCcccHHHHHHHHHHHcCCCcE
Confidence 579999999999998876433 2566677764
No 100
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.31 E-value=7.3e-12 Score=94.39 Aligned_cols=106 Identities=15% Similarity=0.111 Sum_probs=76.9
Q ss_pred HHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccc
Q psy5757 16 ILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGM 94 (139)
Q Consensus 16 ~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~ 94 (139)
...+++.. ..+++.++||+|||+|.++..++... ++++|+|+++.+++.++++++. +. +++++.++|+
T Consensus 171 a~~~~~l~--~~~~g~~vLDp~cGtG~~lieaa~~~---~~v~g~Di~~~~~~~a~~nl~~~g~------~~i~~~~~D~ 239 (329)
T TIGR01177 171 ARAMVNLA--RVTEGDRVLDPFCGTGGFLIEAGLMG---AKVIGCDIDWKMVAGARINLEHYGI------EDFFVKRGDA 239 (329)
T ss_pred HHHHHHHh--CCCCcCEEEECCCCCCHHHHHHHHhC---CeEEEEcCCHHHHHHHHHHHHHhCC------CCCeEEecch
Confidence 33444433 25788899999999999998877654 3899999999999999999987 54 5688899996
Q ss_pred hhhhHHHhhhccCCceeEEecCccccccc------------cceeeeeeeccCCCC
Q psy5757 95 IKRIETVELMMKFDRYDFLPHAPAESWMN------------IPVCINYTATMPEGS 138 (139)
Q Consensus 95 ~~~~~~~~~~~~~~~~D~vi~~~~~~~~~------------~p~~~~~~~~~p~g~ 138 (139)
.+ ++ ...++||+|++||++.... +......+.++|+|.
T Consensus 240 ~~-l~-----~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~ 289 (329)
T TIGR01177 240 TK-LP-----LSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGW 289 (329)
T ss_pred hc-CC-----cccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcE
Confidence 54 21 2246799999999864321 122333567777774
No 101
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.31 E-value=2.3e-11 Score=88.53 Aligned_cols=78 Identities=14% Similarity=0.147 Sum_probs=61.5
Q ss_pred CCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccCCc
Q psy5757 30 NSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKFDR 109 (139)
Q Consensus 30 ~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~ 109 (139)
..++||+|||+|.++..++...+ ..+++++|+|+.+++.|++++.. .+.+++.+|+.+.+.. . ..++
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~-~~~v~~vDis~~al~~A~~N~~~--------~~~~~~~~D~~~~l~~---~-~~~~ 153 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALD-GIELHAADIDPAAVRCARRNLAD--------AGGTVHEGDLYDALPT---A-LRGR 153 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHH--------cCCEEEEeechhhcch---h-cCCC
Confidence 45899999999999999998863 45899999999999999999876 2246788886553321 1 1246
Q ss_pred eeEEecCcccc
Q psy5757 110 YDFLPHAPAES 120 (139)
Q Consensus 110 ~D~vi~~~~~~ 120 (139)
||+|++||++.
T Consensus 154 fDlVv~NPPy~ 164 (251)
T TIGR03704 154 VDILAANAPYV 164 (251)
T ss_pred EeEEEECCCCC
Confidence 99999999864
No 102
>PLN03075 nicotianamine synthase; Provisional
Probab=99.31 E-value=9.8e-12 Score=91.88 Aligned_cols=98 Identities=17% Similarity=0.106 Sum_probs=71.0
Q ss_pred CCCeEEEEcccCChh-HHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh--hccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757 29 ENSKVLEIGSGSGYL-TNMISELMNSTGQVIGIEHVPQLVNSSIQNILH--SNARLLTDGHIKFVALGMIKRIETVELMM 105 (139)
Q Consensus 29 ~~~~iLdiG~G~G~~-~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~--~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 105 (139)
++++|+|+|||.|.+ +..++....+.++++++|+++++++.|++.+.. ++ ..+++|..+|+.+...
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL-----~~rV~F~~~Da~~~~~------ 191 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDL-----SKRMFFHTADVMDVTE------ 191 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCc-----cCCcEEEECchhhccc------
Confidence 678999999997744 444554555788999999999999999999853 44 3679999999655211
Q ss_pred cCCceeEEecCccccccc--cce---eeeeeeccCCCC
Q psy5757 106 KFDRYDFLPHAPAESWMN--IPV---CINYTATMPEGS 138 (139)
Q Consensus 106 ~~~~~D~vi~~~~~~~~~--~p~---~~~~~~~~p~g~ 138 (139)
..+.||+|++. ++|.+. ++. ....+.++|+|.
T Consensus 192 ~l~~FDlVF~~-ALi~~dk~~k~~vL~~l~~~LkPGG~ 228 (296)
T PLN03075 192 SLKEYDVVFLA-ALVGMDKEEKVKVIEHLGKHMAPGAL 228 (296)
T ss_pred ccCCcCEEEEe-cccccccccHHHHHHHHHHhcCCCcE
Confidence 23579999999 766653 333 333666777764
No 103
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.30 E-value=6.7e-12 Score=84.56 Aligned_cols=97 Identities=20% Similarity=0.266 Sum_probs=67.4
Q ss_pred HHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh
Q psy5757 18 TYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR 97 (139)
Q Consensus 18 ~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~ 97 (139)
..+..+.+..+++++|||+|||+|.++..+++... +++++|+++.+++. .. .....+...+
T Consensus 11 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~---~~~g~D~~~~~~~~-----~~-------~~~~~~~~~~---- 71 (161)
T PF13489_consen 11 DLLERLLPRLKPGKRVLDIGCGTGSFLRALAKRGF---EVTGVDISPQMIEK-----RN-------VVFDNFDAQD---- 71 (161)
T ss_dssp HHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHTTS---EEEEEESSHHHHHH-----TT-------SEEEEEECHT----
T ss_pred HHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHhCC---EEEEEECCHHHHhh-----hh-------hhhhhhhhhh----
Confidence 33444443357889999999999999999977654 99999999999887 11 0111111111
Q ss_pred hHHHhhhccCCceeEEecCccccccccceee---eeeeccCCCC
Q psy5757 98 IETVELMMKFDRYDFLPHAPAESWMNIPVCI---NYTATMPEGS 138 (139)
Q Consensus 98 ~~~~~~~~~~~~~D~vi~~~~~~~~~~p~~~---~~~~~~p~g~ 138 (139)
...+.++||+|+++.++||+++|... .++.++|+|.
T Consensus 72 -----~~~~~~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~ 110 (161)
T PF13489_consen 72 -----PPFPDGSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGY 110 (161)
T ss_dssp -----HHCHSSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEE
T ss_pred -----hhccccchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCE
Confidence 11235789999999999999987533 3666777663
No 104
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.30 E-value=1.3e-11 Score=90.68 Aligned_cols=90 Identities=16% Similarity=0.255 Sum_probs=66.8
Q ss_pred CCCeEEEEcccCChhHHHHHHHcCCC--ceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757 29 ENSKVLEIGSGSGYLTNMISELMNST--GQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMK 106 (139)
Q Consensus 29 ~~~~iLdiG~G~G~~~~~l~~~~~~~--~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 106 (139)
+..+|||+|||+|..+..+++..+.. .+++|+|+|+.+++.|+++. +++++.++|..+ + +.+
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~----------~~~~~~~~d~~~----l--p~~ 148 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY----------PQVTFCVASSHR----L--PFA 148 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC----------CCCeEEEeeccc----C--CCc
Confidence 45789999999999999999876422 37999999999999997653 567888888543 2 223
Q ss_pred CCceeEEecCccccccccceeeeeeeccCCCC
Q psy5757 107 FDRYDFLPHAPAESWMNIPVCINYTATMPEGS 138 (139)
Q Consensus 107 ~~~~D~vi~~~~~~~~~~p~~~~~~~~~p~g~ 138 (139)
.++||+|++..... .....++.++|+|.
T Consensus 149 ~~sfD~I~~~~~~~----~~~e~~rvLkpgG~ 176 (272)
T PRK11088 149 DQSLDAIIRIYAPC----KAEELARVVKPGGI 176 (272)
T ss_pred CCceeEEEEecCCC----CHHHHHhhccCCCE
Confidence 56899999876422 23445677788874
No 105
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.29 E-value=3.6e-11 Score=85.90 Aligned_cols=81 Identities=19% Similarity=0.258 Sum_probs=65.4
Q ss_pred CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757 28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMK 106 (139)
Q Consensus 28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 106 (139)
.++.+|||+|||+|..+..+++... +++++|+++.+++.|+++... +. ..++++..+|. +. .
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~~---~v~~~D~s~~~i~~a~~~~~~~~~-----~~~i~~~~~d~----~~-----~ 124 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRGA---KVVASDISPQMVEEARERAPEAGL-----AGNITFEVGDL----ES-----L 124 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCC-----ccCcEEEEcCc----hh-----c
Confidence 4678999999999999999998753 799999999999999998876 32 25788998883 21 2
Q ss_pred CCceeEEecCccccccccc
Q psy5757 107 FDRYDFLPHAPAESWMNIP 125 (139)
Q Consensus 107 ~~~~D~vi~~~~~~~~~~p 125 (139)
.++||+|++..++|+++++
T Consensus 125 ~~~fD~v~~~~~l~~~~~~ 143 (230)
T PRK07580 125 LGRFDTVVCLDVLIHYPQE 143 (230)
T ss_pred cCCcCEEEEcchhhcCCHH
Confidence 3579999999998776544
No 106
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.28 E-value=3.4e-11 Score=85.52 Aligned_cols=93 Identities=16% Similarity=0.273 Sum_probs=75.0
Q ss_pred HHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEE-cc
Q psy5757 16 ILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVA-LG 93 (139)
Q Consensus 16 ~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~-~d 93 (139)
....+..+. ...+.++|||+|++.|+-+..++...+.+++++++|.+++..+.|++++++ +. .++++.+. +|
T Consensus 47 ~g~~L~~L~-~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~-----~~~i~~~~~gd 120 (219)
T COG4122 47 TGALLRLLA-RLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGV-----DDRIELLLGGD 120 (219)
T ss_pred HHHHHHHHH-HhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCC-----cceEEEEecCc
Confidence 334444444 256788999999999999999999997688999999999999999999999 77 56688888 58
Q ss_pred chhhhHHHhhhccCCceeEEecCcc
Q psy5757 94 MIKRIETVELMMKFDRYDFLPHAPA 118 (139)
Q Consensus 94 ~~~~~~~~~~~~~~~~~D~vi~~~~ 118 (139)
..+.+.. ...++||+||....
T Consensus 121 al~~l~~----~~~~~fDliFIDad 141 (219)
T COG4122 121 ALDVLSR----LLDGSFDLVFIDAD 141 (219)
T ss_pred HHHHHHh----ccCCCccEEEEeCC
Confidence 7664442 23578999998876
No 107
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.28 E-value=2.3e-11 Score=90.77 Aligned_cols=98 Identities=13% Similarity=0.175 Sum_probs=77.1
Q ss_pred CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757 27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMM 105 (139)
Q Consensus 27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 105 (139)
+.++.++||+|||+|..+..++++. |..+++++|. +.+++.+++++.. +. .++++++.+|+.+.
T Consensus 147 ~~~~~~vlDiG~G~G~~~~~~~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~gl-----~~rv~~~~~d~~~~-------- 211 (306)
T TIGR02716 147 LDGVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEKGV-----ADRMRGIAVDIYKE-------- 211 (306)
T ss_pred CCCCCEEEEeCCchhHHHHHHHHHC-CCCEEEEEec-HHHHHHHHHHHHhCCc-----cceEEEEecCccCC--------
Confidence 4677899999999999999999998 5779999997 6899999998887 55 46899999996531
Q ss_pred cCCceeEEecCccccccccc-----eeeeeeeccCCCCC
Q psy5757 106 KFDRYDFLPHAPAESWMNIP-----VCINYTATMPEGSY 139 (139)
Q Consensus 106 ~~~~~D~vi~~~~~~~~~~p-----~~~~~~~~~p~g~~ 139 (139)
+...+|++++...+|...+. ....++.++|+|.+
T Consensus 212 ~~~~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l 250 (306)
T TIGR02716 212 SYPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRL 250 (306)
T ss_pred CCCCCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEE
Confidence 12236999888888876554 23448888998853
No 108
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.28 E-value=7.4e-11 Score=85.45 Aligned_cols=98 Identities=21% Similarity=0.294 Sum_probs=74.6
Q ss_pred HHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccc
Q psy5757 16 ILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGM 94 (139)
Q Consensus 16 ~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~ 94 (139)
+..++..+. +.+|.+|||.|+|+|+++.++++...|.++|+.+|+.++..+.|+++++. ++ ..++++.+.|+
T Consensus 29 ~~~I~~~l~--i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl-----~~~v~~~~~Dv 101 (247)
T PF08704_consen 29 ISYILMRLD--IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGL-----DDNVTVHHRDV 101 (247)
T ss_dssp HHHHHHHTT----TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTC-----CTTEEEEES-G
T ss_pred HHHHHHHcC--CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCC-----CCCceeEecce
Confidence 556666665 79999999999999999999999999999999999999999999999998 66 46899999998
Q ss_pred hh-hhHHHhhhccCCceeEEecCcccccccc
Q psy5757 95 IK-RIETVELMMKFDRYDFLPHAPAESWMNI 124 (139)
Q Consensus 95 ~~-~~~~~~~~~~~~~~D~vi~~~~~~~~~~ 124 (139)
.+ ++. .. -...+|.|+...+--|..-
T Consensus 102 ~~~g~~---~~-~~~~~DavfLDlp~Pw~~i 128 (247)
T PF08704_consen 102 CEEGFD---EE-LESDFDAVFLDLPDPWEAI 128 (247)
T ss_dssp GCG--S---TT--TTSEEEEEEESSSGGGGH
T ss_pred eccccc---cc-ccCcccEEEEeCCCHHHHH
Confidence 53 442 11 1256999999988666443
No 109
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.27 E-value=5.4e-11 Score=89.21 Aligned_cols=76 Identities=16% Similarity=0.136 Sum_probs=63.5
Q ss_pred CCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhccC
Q psy5757 29 ENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMKF 107 (139)
Q Consensus 29 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 107 (139)
++.+|||+|||+|.++..+++... +++|+|+++.+++.|+++++. ++ .+++++++|+.+... . ..
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~~---~V~gvD~s~~av~~A~~n~~~~~l------~~v~~~~~D~~~~~~----~-~~ 238 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPGM---QLTGIEISAEAIACAKQSAAELGL------TNVQFQALDSTQFAT----A-QG 238 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcCC---EEEEEeCCHHHHHHHHHHHHHcCC------CceEEEEcCHHHHHH----h-cC
Confidence 568999999999999999999653 999999999999999999988 44 689999999765222 1 23
Q ss_pred CceeEEecCcc
Q psy5757 108 DRYDFLPHAPA 118 (139)
Q Consensus 108 ~~~D~vi~~~~ 118 (139)
++||+|+++|+
T Consensus 239 ~~~D~Vv~dPP 249 (315)
T PRK03522 239 EVPDLVLVNPP 249 (315)
T ss_pred CCCeEEEECCC
Confidence 46999999987
No 110
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.26 E-value=6.2e-11 Score=86.89 Aligned_cols=80 Identities=19% Similarity=0.367 Sum_probs=65.2
Q ss_pred CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccC
Q psy5757 28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKF 107 (139)
Q Consensus 28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 107 (139)
.++.+|||+|||+|..+..++... +..+++++|+++.+++.|++++.... ..+++++.+|+.+.+ ..
T Consensus 107 ~~~~~vLDiG~GsG~~~~~la~~~-~~~~v~~iDis~~~l~~a~~n~~~~~-----~~~i~~~~~d~~~~~-------~~ 173 (275)
T PRK09328 107 KEPLRVLDLGTGSGAIALALAKER-PDAEVTAVDISPEALAVARRNAKHGL-----GARVEFLQGDWFEPL-------PG 173 (275)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhCC-----CCcEEEEEccccCcC-------CC
Confidence 466799999999999999999988 46699999999999999999987311 267999999964321 13
Q ss_pred CceeEEecCcccc
Q psy5757 108 DRYDFLPHAPAES 120 (139)
Q Consensus 108 ~~~D~vi~~~~~~ 120 (139)
++||+|++|+++.
T Consensus 174 ~~fD~Iv~npPy~ 186 (275)
T PRK09328 174 GRFDLIVSNPPYI 186 (275)
T ss_pred CceeEEEECCCcC
Confidence 5799999999854
No 111
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=99.26 E-value=4e-11 Score=86.91 Aligned_cols=97 Identities=13% Similarity=0.171 Sum_probs=78.1
Q ss_pred HHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccc
Q psy5757 16 ILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGM 94 (139)
Q Consensus 16 ~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~ 94 (139)
..+++..+.. ..+.++|||+|+++|+-+.++++..++.++++++|.+++..+.|++++.+ ++ .++++++.+++
T Consensus 67 ~g~lL~~l~~-~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~-----~~~I~~~~G~a 140 (247)
T PLN02589 67 EGQFLNMLLK-LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGV-----AHKIDFREGPA 140 (247)
T ss_pred HHHHHHHHHH-HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCC-----CCceEEEeccH
Confidence 3455555542 45568999999999999999999987788999999999999999999998 76 58999999999
Q ss_pred hhhhHHHhhhc-cCCceeEEecCcc
Q psy5757 95 IKRIETVELMM-KFDRYDFLPHAPA 118 (139)
Q Consensus 95 ~~~~~~~~~~~-~~~~~D~vi~~~~ 118 (139)
.+.++++.... ..++||+||....
T Consensus 141 ~e~L~~l~~~~~~~~~fD~iFiDad 165 (247)
T PLN02589 141 LPVLDQMIEDGKYHGTFDFIFVDAD 165 (247)
T ss_pred HHHHHHHHhccccCCcccEEEecCC
Confidence 88776653221 1257999998876
No 112
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.26 E-value=9.3e-12 Score=91.22 Aligned_cols=104 Identities=11% Similarity=0.207 Sum_probs=71.6
Q ss_pred CCCeEEEEcccCCh----hHHHHHHHcC----CCceEEEEeCCHHHHHHHHHHHHh-h-ccc--------cc--------
Q psy5757 29 ENSKVLEIGSGSGY----LTNMISELMN----STGQVIGIEHVPQLVNSSIQNILH-S-NAR--------LL-------- 82 (139)
Q Consensus 29 ~~~~iLdiG~G~G~----~~~~l~~~~~----~~~~v~~~d~~~~~~~~a~~~~~~-~-~~~--------~~-------- 82 (139)
++.+|||+|||+|. ++..+++..+ ...+++|+|+|+.+++.|++.... . .+. .+
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45699999999996 4555555543 145899999999999999886421 0 000 00
Q ss_pred ----cCCcEEEEEccchhhhHHHhhhccCCceeEEecCccccccccce-----eeeeeeccCCCC
Q psy5757 83 ----TDGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAESWMNIPV-----CINYTATMPEGS 138 (139)
Q Consensus 83 ----~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p~-----~~~~~~~~p~g~ 138 (139)
-..++++.+.|+.+. ..+.++||+|+|..++|++.++. ...++.++|+|.
T Consensus 179 v~~~ir~~V~F~~~dl~~~------~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~ 237 (264)
T smart00138 179 VKPELKERVRFAKHNLLAE------SPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGY 237 (264)
T ss_pred EChHHhCcCEEeeccCCCC------CCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeE
Confidence 013678888886541 11356799999999999997653 344888889885
No 113
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.25 E-value=3.9e-11 Score=83.49 Aligned_cols=93 Identities=14% Similarity=0.270 Sum_probs=69.1
Q ss_pred CCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccCC
Q psy5757 29 ENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKFD 108 (139)
Q Consensus 29 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~ 108 (139)
.-.+++|+|||.|.++..|+.+.. +++++|+++.+++.|++++.. .+++++++.|+.+.+ +.+
T Consensus 43 ry~~alEvGCs~G~lT~~LA~rCd---~LlavDis~~Al~~Ar~Rl~~-------~~~V~~~~~dvp~~~-------P~~ 105 (201)
T PF05401_consen 43 RYRRALEVGCSIGVLTERLAPRCD---RLLAVDISPRALARARERLAG-------LPHVEWIQADVPEFW-------PEG 105 (201)
T ss_dssp SEEEEEEE--TTSHHHHHHGGGEE---EEEEEES-HHHHHHHHHHTTT--------SSEEEEES-TTT----------SS
T ss_pred ccceeEecCCCccHHHHHHHHhhC---ceEEEeCCHHHHHHHHHhcCC-------CCCeEEEECcCCCCC-------CCC
Confidence 335899999999999999999986 999999999999999999877 478999999965522 467
Q ss_pred ceeEEecCccccccccc------eeeeeeeccCCCC
Q psy5757 109 RYDFLPHAPAESWMNIP------VCINYTATMPEGS 138 (139)
Q Consensus 109 ~~D~vi~~~~~~~~~~p------~~~~~~~~~p~g~ 138 (139)
+||+|+...+++++.+. .......+.|+|.
T Consensus 106 ~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~ 141 (201)
T PF05401_consen 106 RFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGH 141 (201)
T ss_dssp -EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEE
T ss_pred CeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCE
Confidence 89999999999999753 2333455666663
No 114
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.25 E-value=3.8e-11 Score=89.51 Aligned_cols=116 Identities=10% Similarity=0.057 Sum_probs=78.8
Q ss_pred HHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh
Q psy5757 18 TYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR 97 (139)
Q Consensus 18 ~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~ 97 (139)
.....+...+.++.+|||+|||+|..+..+++......+++++|+|++|++.+++++.... ...++..+++|+.+.
T Consensus 52 ~~~~~ia~~~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~----p~~~v~~i~gD~~~~ 127 (301)
T TIGR03438 52 RHADEIAAATGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADY----PQLEVHGICADFTQP 127 (301)
T ss_pred HHHHHHHHhhCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhC----CCceEEEEEEcccch
Confidence 3344444345677899999999999999999987423589999999999999998876511 113567789998763
Q ss_pred hHHHhhhccCCceeEEecCccccccccc-----eeeeeeeccCCCC
Q psy5757 98 IETVELMMKFDRYDFLPHAPAESWMNIP-----VCINYTATMPEGS 138 (139)
Q Consensus 98 ~~~~~~~~~~~~~D~vi~~~~~~~~~~p-----~~~~~~~~~p~g~ 138 (139)
.+.. .........++++..+++++... ....++.+.|+|.
T Consensus 128 ~~~~-~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~ 172 (301)
T TIGR03438 128 LALP-PEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGG 172 (301)
T ss_pred hhhh-cccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCE
Confidence 3211 11111134567777778877642 3444777888875
No 115
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.25 E-value=6.9e-11 Score=91.05 Aligned_cols=84 Identities=19% Similarity=0.180 Sum_probs=66.0
Q ss_pred CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757 28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMK 106 (139)
Q Consensus 28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 106 (139)
.++++|||+|||+|.++..++... ..+++++|+|+.+++.|++++.. ++ ...+++++++|+.+.+.++.. .
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~g--a~~V~~VD~s~~al~~a~~N~~~Ngl----~~~~v~~i~~D~~~~l~~~~~--~ 290 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMGG--CSQVVSVDTSQEALDIARQNVELNKL----DLSKAEFVRDDVFKLLRTYRD--R 290 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhCC--CCEEEEEECCHHHHHHHHHHHHHcCC----CCCcEEEEEccHHHHHHHHHh--c
Confidence 467899999999999988766543 23899999999999999999988 43 114799999998775544321 2
Q ss_pred CCceeEEecCccc
Q psy5757 107 FDRYDFLPHAPAE 119 (139)
Q Consensus 107 ~~~~D~vi~~~~~ 119 (139)
.++||+|+++|+.
T Consensus 291 ~~~fDlVilDPP~ 303 (396)
T PRK15128 291 GEKFDVIVMDPPK 303 (396)
T ss_pred CCCCCEEEECCCC
Confidence 3579999999984
No 116
>KOG2904|consensus
Probab=99.25 E-value=7.8e-11 Score=85.44 Aligned_cols=113 Identities=16% Similarity=0.193 Sum_probs=81.4
Q ss_pred hhcccccChHH---HHHHHHHhccc-CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hcc
Q psy5757 5 KIGAAIGGISA---ILTYLSIIQPH-LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNA 79 (139)
Q Consensus 5 ~~~~~~~~~~~---~~~~~~~l~~~-~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~ 79 (139)
+.|..|++++. +..+++.+.+. ...+..++|+|||+|..+..++...+ ++.++++|.|+.++..|.+|.++ .+
T Consensus 120 ~pgVlIPRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~-~~~v~AiD~S~~Ai~La~eN~qr~~l- 197 (328)
T KOG2904|consen 120 KPGVLIPRPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLP-QCTVTAIDVSKAAIKLAKENAQRLKL- 197 (328)
T ss_pred cCCeeecCccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCC-CceEEEEeccHHHHHHHHHHHHHHhh-
Confidence 46788888874 44444444421 12345899999999999999999995 88999999999999999999998 65
Q ss_pred ccccCCcEEEEEccchhhhHHHhhhccCCceeEEecCcccccccc
Q psy5757 80 RLLTDGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAESWMNI 124 (139)
Q Consensus 80 ~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~ 124 (139)
..++.+++-++...... +.+...+++|++++||++-.-.|
T Consensus 198 ----~g~i~v~~~~me~d~~~-~~~l~~~~~dllvsNPPYI~~dD 237 (328)
T KOG2904|consen 198 ----SGRIEVIHNIMESDASD-EHPLLEGKIDLLVSNPPYIRKDD 237 (328)
T ss_pred ----cCceEEEeccccccccc-ccccccCceeEEecCCCcccccc
Confidence 56777776554431110 01234578999999998544333
No 117
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.24 E-value=1e-10 Score=87.59 Aligned_cols=98 Identities=16% Similarity=0.102 Sum_probs=69.9
Q ss_pred HHHHHHHhccc-CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccc
Q psy5757 16 ILTYLSIIQPH-LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGM 94 (139)
Q Consensus 16 ~~~~~~~l~~~-~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~ 94 (139)
+..+++++... ..++.+|||+|||+|.++..+++... +|+++|+|+.+++.++++............++++...|+
T Consensus 130 v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g~---~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl 206 (315)
T PLN02585 130 VEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEGA---IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDL 206 (315)
T ss_pred HHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcch
Confidence 34555565421 13568999999999999999998753 899999999999999998765100000124678888884
Q ss_pred hhhhHHHhhhccCCceeEEecCccccccccc
Q psy5757 95 IKRIETVELMMKFDRYDFLPHAPAESWMNIP 125 (139)
Q Consensus 95 ~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p 125 (139)
+.+ .++||+|++..+++|+++.
T Consensus 207 ----~~l-----~~~fD~Vv~~~vL~H~p~~ 228 (315)
T PLN02585 207 ----ESL-----SGKYDTVTCLDVLIHYPQD 228 (315)
T ss_pred ----hhc-----CCCcCEEEEcCEEEecCHH
Confidence 321 3579999999998776653
No 118
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.23 E-value=1.4e-10 Score=90.39 Aligned_cols=81 Identities=23% Similarity=0.258 Sum_probs=66.8
Q ss_pred CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757 27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMM 105 (139)
Q Consensus 27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 105 (139)
..++.+|||+|||+|.++..+++... +|+++|+++.+++.|++++.. +. .|++++.+|+.+.+..+..
T Consensus 290 ~~~~~~vLDl~cG~G~~sl~la~~~~---~V~~vE~~~~av~~a~~n~~~~~~------~nv~~~~~d~~~~l~~~~~-- 358 (431)
T TIGR00479 290 LQGEELVVDAYCGVGTFTLPLAKQAK---SVVGIEVVPESVEKAQQNAELNGI------ANVEFLAGTLETVLPKQPW-- 358 (431)
T ss_pred cCCCCEEEEcCCCcCHHHHHHHHhCC---EEEEEEcCHHHHHHHHHHHHHhCC------CceEEEeCCHHHHHHHHHh--
Confidence 35668999999999999999998864 899999999999999999987 44 7899999997664443211
Q ss_pred cCCceeEEecCcc
Q psy5757 106 KFDRYDFLPHAPA 118 (139)
Q Consensus 106 ~~~~~D~vi~~~~ 118 (139)
..++||+|+.+|+
T Consensus 359 ~~~~~D~vi~dPP 371 (431)
T TIGR00479 359 AGQIPDVLLLDPP 371 (431)
T ss_pred cCCCCCEEEECcC
Confidence 2346999999987
No 119
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=99.22 E-value=1.2e-10 Score=84.56 Aligned_cols=97 Identities=18% Similarity=0.194 Sum_probs=77.5
Q ss_pred hhcc-cccChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhcccccc
Q psy5757 5 KIGA-AIGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLT 83 (139)
Q Consensus 5 ~~~~-~~~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~ 83 (139)
.+|| ++-......++.+... ..++..|||||+|.|.+|..|+++.. +|+++|+|+.++...++.+..
T Consensus 7 ~~GQnFL~d~~v~~kIv~~a~--~~~~d~VlEIGpG~GaLT~~Ll~~~~---~v~aiEiD~~l~~~L~~~~~~------- 74 (259)
T COG0030 7 RLGQNFLIDKNVIDKIVEAAN--ISPGDNVLEIGPGLGALTEPLLERAA---RVTAIEIDRRLAEVLKERFAP------- 74 (259)
T ss_pred CcccccccCHHHHHHHHHhcC--CCCCCeEEEECCCCCHHHHHHHhhcC---eEEEEEeCHHHHHHHHHhccc-------
Confidence 4677 4456667788888886 56688999999999999999999997 899999999999999998764
Q ss_pred CCcEEEEEccchhhhHHHhhhccCCceeEEecCcc
Q psy5757 84 DGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPA 118 (139)
Q Consensus 84 ~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~ 118 (139)
.+|++++.+|+.+ +. +.. ....+.|++|.+
T Consensus 75 ~~n~~vi~~DaLk-~d---~~~-l~~~~~vVaNlP 104 (259)
T COG0030 75 YDNLTVINGDALK-FD---FPS-LAQPYKVVANLP 104 (259)
T ss_pred ccceEEEeCchhc-Cc---chh-hcCCCEEEEcCC
Confidence 4789999999776 21 110 005789999988
No 120
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.22 E-value=1.4e-10 Score=81.00 Aligned_cols=90 Identities=14% Similarity=0.185 Sum_probs=66.4
Q ss_pred HHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccch
Q psy5757 17 LTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMI 95 (139)
Q Consensus 17 ~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~ 95 (139)
..+.+.+. ..++.++||+|||.|..+.+|++++- .|+++|+|+..++.+++.... ++ +++..+.|+.
T Consensus 20 s~v~~a~~--~~~~g~~LDlgcG~GRNalyLA~~G~---~VtAvD~s~~al~~l~~~a~~~~l-------~i~~~~~Dl~ 87 (192)
T PF03848_consen 20 SEVLEAVP--LLKPGKALDLGCGEGRNALYLASQGF---DVTAVDISPVALEKLQRLAEEEGL-------DIRTRVADLN 87 (192)
T ss_dssp HHHHHHCT--TS-SSEEEEES-TTSHHHHHHHHTT----EEEEEESSHHHHHHHHHHHHHTT--------TEEEEE-BGC
T ss_pred HHHHHHHh--hcCCCcEEEcCCCCcHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHhhcCc-------eeEEEEecch
Confidence 44455543 33567999999999999999999986 899999999999999888776 44 4888888854
Q ss_pred hhhHHHhhhccCCceeEEecCccccccccc
Q psy5757 96 KRIETVELMMKFDRYDFLPHAPAESWMNIP 125 (139)
Q Consensus 96 ~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p 125 (139)
+ +. ..+.||+|++.-+++++..+
T Consensus 88 ~-~~------~~~~yD~I~st~v~~fL~~~ 110 (192)
T PF03848_consen 88 D-FD------FPEEYDFIVSTVVFMFLQRE 110 (192)
T ss_dssp C-BS-------TTTEEEEEEESSGGGS-GG
T ss_pred h-cc------ccCCcCEEEEEEEeccCCHH
Confidence 4 11 12579999998888888765
No 121
>PRK04457 spermidine synthase; Provisional
Probab=99.22 E-value=6.3e-11 Score=86.77 Aligned_cols=79 Identities=16% Similarity=0.242 Sum_probs=64.8
Q ss_pred CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757 28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMK 106 (139)
Q Consensus 28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 106 (139)
.++++|||+|||+|.++..+++.. +.++++++|+++++++.|++++.. .. .++++++++|+.+.+.+ .
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~-----~~rv~v~~~Da~~~l~~-----~ 133 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYL-PDTRQTAVEINPQVIAVARNHFELPEN-----GERFEVIEADGAEYIAV-----H 133 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHcCCCCC-----CCceEEEECCHHHHHHh-----C
Confidence 456799999999999999999988 577999999999999999998765 22 37899999997764442 1
Q ss_pred CCceeEEecCc
Q psy5757 107 FDRYDFLPHAP 117 (139)
Q Consensus 107 ~~~~D~vi~~~ 117 (139)
.++||+|+++.
T Consensus 134 ~~~yD~I~~D~ 144 (262)
T PRK04457 134 RHSTDVILVDG 144 (262)
T ss_pred CCCCCEEEEeC
Confidence 35799999864
No 122
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=99.21 E-value=1.8e-10 Score=87.98 Aligned_cols=96 Identities=13% Similarity=0.146 Sum_probs=72.3
Q ss_pred HHHHHHHHHhcccCC-CCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEE
Q psy5757 14 SAILTYLSIIQPHLN-ENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVA 91 (139)
Q Consensus 14 ~~~~~~~~~l~~~~~-~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~ 91 (139)
.....+.+.+...+. .+.++||++||+|.++..+++... +|+++|+++.+++.+++++.. +. .|++++.
T Consensus 190 ~~~e~l~~~v~~~~~~~~~~vLDl~~G~G~~sl~la~~~~---~v~~vE~~~~ai~~a~~N~~~~~~------~~v~~~~ 260 (362)
T PRK05031 190 AVNEKMLEWALDATKGSKGDLLELYCGNGNFTLALARNFR---RVLATEISKPSVAAAQYNIAANGI------DNVQIIR 260 (362)
T ss_pred HHHHHHHHHHHHHhhcCCCeEEEEeccccHHHHHHHhhCC---EEEEEECCHHHHHHHHHHHHHhCC------CcEEEEE
Confidence 345555555544333 235799999999999999999875 999999999999999999988 44 6899999
Q ss_pred ccchhhhHHHhhhcc----------CCceeEEecCcc
Q psy5757 92 LGMIKRIETVELMMK----------FDRYDFLPHAPA 118 (139)
Q Consensus 92 ~d~~~~~~~~~~~~~----------~~~~D~vi~~~~ 118 (139)
+|+.+.+..+..... ..+||+|+.+|+
T Consensus 261 ~d~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPP 297 (362)
T PRK05031 261 MSAEEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDPP 297 (362)
T ss_pred CCHHHHHHHHhhcccccccccccccCCCCCEEEECCC
Confidence 998775543321100 125899999998
No 123
>PLN02672 methionine S-methyltransferase
Probab=99.21 E-value=1.2e-10 Score=98.26 Aligned_cols=109 Identities=16% Similarity=0.147 Sum_probs=77.7
Q ss_pred hhhcccccChHHHHHHHHHhcccC---CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hcc
Q psy5757 4 VKIGAAIGGISAILTYLSIIQPHL---NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNA 79 (139)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~ 79 (139)
+..+..++++. +..+.+.+.... .++.+|||+|||+|..+..+++..+ .++++++|+|+.+++.|++|++. ++-
T Consensus 91 V~p~VLIPRpe-TE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~-~~~v~avDis~~Al~~A~~Na~~n~l~ 168 (1082)
T PLN02672 91 EIPSIFIPEDW-SFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWL-PSKVYGLDINPRAVKVAWINLYLNALD 168 (1082)
T ss_pred eCCCcccCchh-HHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCcc
Confidence 45677788876 444455554211 1346899999999999999999884 56999999999999999999976 220
Q ss_pred cc----------ccCCcEEEEEccchhhhHHHhhhccCCceeEEecCccc
Q psy5757 80 RL----------LTDGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAE 119 (139)
Q Consensus 80 ~~----------~~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~ 119 (139)
.+ ...++++++++|+.+.+. ....+||+|++||+.
T Consensus 169 ~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~-----~~~~~fDlIVSNPPY 213 (1082)
T PLN02672 169 DDGLPVYDGEGKTLLDRVEFYESDLLGYCR-----DNNIELDRIVGCIPQ 213 (1082)
T ss_pred cccccccccccccccccEEEEECchhhhcc-----ccCCceEEEEECCCc
Confidence 00 002479999999755332 011369999999983
No 124
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.21 E-value=5.9e-11 Score=84.44 Aligned_cols=103 Identities=12% Similarity=0.063 Sum_probs=72.6
Q ss_pred CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hcc------ccccCCcEEEEEccchhhhHH
Q psy5757 28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNA------RLLTDGHIKFVALGMIKRIET 100 (139)
Q Consensus 28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~------~~~~~~~i~~~~~d~~~~~~~ 100 (139)
.++.++||+|||.|..+..++++.- +|+|+|+|+.+++.+.+.... ... ......++++.++|+.+ +.
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~G~---~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~-~~- 107 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQGH---RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFA-LT- 107 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhCCC---eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCC-CC-
Confidence 5678999999999999999999875 999999999999986443211 000 00012468899999765 21
Q ss_pred HhhhccCCceeEEecCccccccccce-----eeeeeeccCCCC
Q psy5757 101 VELMMKFDRYDFLPHAPAESWMNIPV-----CINYTATMPEGS 138 (139)
Q Consensus 101 ~~~~~~~~~~D~vi~~~~~~~~~~p~-----~~~~~~~~p~g~ 138 (139)
. ...++||.|+...++|+++... ....+.++|+|.
T Consensus 108 --~-~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~ 147 (213)
T TIGR03840 108 --A-ADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGAR 147 (213)
T ss_pred --c-ccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCe
Confidence 0 1135699999988888776443 344777788874
No 125
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.20 E-value=1.7e-10 Score=82.95 Aligned_cols=91 Identities=18% Similarity=0.233 Sum_probs=75.4
Q ss_pred HHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccc
Q psy5757 16 ILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGM 94 (139)
Q Consensus 16 ~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~ 94 (139)
..+++..+. +.++++|+|.|+|||.++.+|++..++.++|+++|+.++.++.|++|+.. ++ .+++++..+|+
T Consensus 83 ~~~I~~~~g--i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l-----~d~v~~~~~Dv 155 (256)
T COG2519 83 AGYIVARLG--ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGL-----GDRVTLKLGDV 155 (256)
T ss_pred HHHHHHHcC--CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhcc-----ccceEEEeccc
Confidence 445555554 78999999999999999999999998899999999999999999999998 65 34588999997
Q ss_pred hhhhHHHhhhccCCceeEEecCcccc
Q psy5757 95 IKRIETVELMMKFDRYDFLPHAPAES 120 (139)
Q Consensus 95 ~~~~~~~~~~~~~~~~D~vi~~~~~~ 120 (139)
.+... .+.||+|+...+=-
T Consensus 156 ~~~~~-------~~~vDav~LDmp~P 174 (256)
T COG2519 156 REGID-------EEDVDAVFLDLPDP 174 (256)
T ss_pred ccccc-------ccccCEEEEcCCCh
Confidence 76432 23799999887533
No 126
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.19 E-value=4.8e-10 Score=78.40 Aligned_cols=84 Identities=12% Similarity=0.058 Sum_probs=67.0
Q ss_pred CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757 28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMK 106 (139)
Q Consensus 28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 106 (139)
..+.++||++||+|.++..++.+... +++++|.++.+++.+++++.. +. ..+++++.+|+.+.+..+. ..
T Consensus 48 ~~g~~vLDLfaGsG~lglea~srga~--~v~~vE~~~~a~~~~~~N~~~~~~-----~~~~~~~~~D~~~~l~~~~--~~ 118 (189)
T TIGR00095 48 IQGAHLLDVFAGSGLLGEEALSRGAK--VAFLEEDDRKANQTLKENLALLKS-----GEQAEVVRNSALRALKFLA--KK 118 (189)
T ss_pred cCCCEEEEecCCCcHHHHHHHhCCCC--EEEEEeCCHHHHHHHHHHHHHhCC-----cccEEEEehhHHHHHHHhh--cc
Confidence 46789999999999999999998753 899999999999999999988 44 2478999999866443221 11
Q ss_pred CCceeEEecCcccc
Q psy5757 107 FDRYDFLPHAPAES 120 (139)
Q Consensus 107 ~~~~D~vi~~~~~~ 120 (139)
...+|+|+..|++.
T Consensus 119 ~~~~dvv~~DPPy~ 132 (189)
T TIGR00095 119 PTFDNVIYLDPPFF 132 (189)
T ss_pred CCCceEEEECcCCC
Confidence 22489999999865
No 127
>PTZ00146 fibrillarin; Provisional
Probab=99.19 E-value=7.6e-11 Score=86.98 Aligned_cols=102 Identities=18% Similarity=0.086 Sum_probs=71.0
Q ss_pred CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757 27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMK 106 (139)
Q Consensus 27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 106 (139)
++++++|||+|||+|.++..+++...+.+.|+++|+++.+.+...+..+. ..|+.+++.|+.+.. .+. ..
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~-------r~NI~~I~~Da~~p~-~y~--~~ 199 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK-------RPNIVPIIEDARYPQ-KYR--ML 199 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh-------cCCCEEEECCccChh-hhh--cc
Confidence 57889999999999999999999997778999999998877655554433 267889999975421 111 12
Q ss_pred CCceeEEecCcccccccccee-eeeeeccCCCC
Q psy5757 107 FDRYDFLPHAPAESWMNIPVC-INYTATMPEGS 138 (139)
Q Consensus 107 ~~~~D~vi~~~~~~~~~~p~~-~~~~~~~p~g~ 138 (139)
.+++|+|++.....+-..-.. ...+.++|+|.
T Consensus 200 ~~~vDvV~~Dva~pdq~~il~~na~r~LKpGG~ 232 (293)
T PTZ00146 200 VPMVDVIFADVAQPDQARIVALNAQYFLKNGGH 232 (293)
T ss_pred cCCCCEEEEeCCCcchHHHHHHHHHHhccCCCE
Confidence 346999999885322110111 12456788875
No 128
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=99.18 E-value=2.1e-10 Score=86.01 Aligned_cols=87 Identities=22% Similarity=0.266 Sum_probs=63.7
Q ss_pred CCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhh-ccccccCCcEEEEE-ccchhhhHHHhhhcc
Q psy5757 29 ENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHS-NARLLTDGHIKFVA-LGMIKRIETVELMMK 106 (139)
Q Consensus 29 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~-~~~~~~~~~i~~~~-~d~~~~~~~~~~~~~ 106 (139)
.+.++||||||+|.....++.+. +..+++|+|+++.+++.|++++..+ . + ..++++++ .|..+.+..+ ..+
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~-~~~~~~atDId~~Al~~A~~Nv~~Np~---l-~~~I~~~~~~~~~~i~~~i--~~~ 186 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHE-YGWRFVGSDIDPQALASAQAIISANPG---L-NGAIRLRLQKDSKAIFKGI--IHK 186 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHHhccC---C-cCcEEEEEccchhhhhhcc--ccc
Confidence 45799999999999888888776 3569999999999999999999873 2 1 34677754 3322212211 113
Q ss_pred CCceeEEecCcccccc
Q psy5757 107 FDRYDFLPHAPAESWM 122 (139)
Q Consensus 107 ~~~~D~vi~~~~~~~~ 122 (139)
.++||+|+|||+||--
T Consensus 187 ~~~fDlivcNPPf~~s 202 (321)
T PRK11727 187 NERFDATLCNPPFHAS 202 (321)
T ss_pred CCceEEEEeCCCCcCc
Confidence 5689999999998854
No 129
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.17 E-value=1e-10 Score=83.30 Aligned_cols=109 Identities=15% Similarity=0.155 Sum_probs=78.3
Q ss_pred HHHHHHHhccc--CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEc
Q psy5757 16 ILTYLSIIQPH--LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVAL 92 (139)
Q Consensus 16 ~~~~~~~l~~~--~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~ 92 (139)
+..+.+.+... ...+.+|||+|||+|..+..+++... +++++|.++.+++.+++++.. +. .++++...
T Consensus 30 ~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~~---~v~~iD~s~~~~~~a~~~~~~~~~------~~~~~~~~ 100 (224)
T TIGR01983 30 LDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGA---NVTGIDASEENIEVAKLHAKKDPL------LKIEYRCT 100 (224)
T ss_pred HHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHHHHHHcCC------CceEEEeC
Confidence 44455555421 13477999999999999999888653 799999999999999998876 32 36888888
Q ss_pred cchhhhHHHhhhccCCceeEEecCccccccccceeee---eeeccCCCC
Q psy5757 93 GMIKRIETVELMMKFDRYDFLPHAPAESWMNIPVCIN---YTATMPEGS 138 (139)
Q Consensus 93 d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p~~~~---~~~~~p~g~ 138 (139)
|+.+.. .. ..++||+|+++..+|++.++.... .+.+.|+|.
T Consensus 101 d~~~~~----~~-~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~~gG~ 144 (224)
T TIGR01983 101 SVEDLA----EK-GAKSFDVVTCMEVLEHVPDPQAFIRACAQLLKPGGI 144 (224)
T ss_pred CHHHhh----cC-CCCCccEEEehhHHHhCCCHHHHHHHHHHhcCCCcE
Confidence 854421 11 135799999999999988775332 455666663
No 130
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.17 E-value=4.1e-10 Score=82.54 Aligned_cols=80 Identities=18% Similarity=0.216 Sum_probs=67.1
Q ss_pred CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757 27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMM 105 (139)
Q Consensus 27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 105 (139)
.+++.+|||+|||+|..+..+++..+..++|+++|+++.+++.+++++++ +. .++++++.|..+ +. .
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~------~~v~~~~~D~~~-~~---~-- 136 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGV------LNVAVTNFDGRV-FG---A-- 136 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC------CcEEEecCCHHH-hh---h--
Confidence 57889999999999999999999886667999999999999999999988 54 678999999654 21 1
Q ss_pred cCCceeEEecCcc
Q psy5757 106 KFDRYDFLPHAPA 118 (139)
Q Consensus 106 ~~~~~D~vi~~~~ 118 (139)
..+.||+|+++++
T Consensus 137 ~~~~fD~Vl~D~P 149 (264)
T TIGR00446 137 AVPKFDAILLDAP 149 (264)
T ss_pred hccCCCEEEEcCC
Confidence 2345999998876
No 131
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.16 E-value=3e-10 Score=87.02 Aligned_cols=99 Identities=12% Similarity=0.115 Sum_probs=71.9
Q ss_pred ccccc-ChHHHHHHHHHhcccC--CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccc
Q psy5757 7 GAAIG-GISAILTYLSIIQPHL--NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLL 82 (139)
Q Consensus 7 ~~~~~-~~~~~~~~~~~l~~~~--~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~ 82 (139)
++++. .......+.+.+.+.+ .++.++||++||+|.++..++.... +++++|+++.+++.|+++++. +.
T Consensus 208 ~~F~Q~n~~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~~~---~v~~vE~~~~av~~a~~N~~~~~~---- 280 (374)
T TIGR02085 208 QSFFQTNPKVAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGPDT---QLTGIEIESEAIACAQQSAQMLGL---- 280 (374)
T ss_pred CccccCCHHHHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhcCC---eEEEEECCHHHHHHHHHHHHHcCC----
Confidence 34443 3333444444443322 3567999999999999999997653 899999999999999999988 54
Q ss_pred cCCcEEEEEccchhhhHHHhhhccCCceeEEecCccc
Q psy5757 83 TDGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAE 119 (139)
Q Consensus 83 ~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~ 119 (139)
.+++++.+|+.+.... ...+||+|+.+|+-
T Consensus 281 --~~~~~~~~d~~~~~~~-----~~~~~D~vi~DPPr 310 (374)
T TIGR02085 281 --DNLSFAALDSAKFATA-----QMSAPELVLVNPPR 310 (374)
T ss_pred --CcEEEEECCHHHHHHh-----cCCCCCEEEECCCC
Confidence 6899999997553221 12359999999983
No 132
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.16 E-value=3.8e-10 Score=88.26 Aligned_cols=81 Identities=21% Similarity=0.238 Sum_probs=67.3
Q ss_pred CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757 27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMM 105 (139)
Q Consensus 27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 105 (139)
..++.+|||+|||+|..+..+++..++.++++++|+++.+++.+++++++ +. .+++++++|+.+....+
T Consensus 248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~------~~v~~~~~D~~~~~~~~---- 317 (444)
T PRK14902 248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGL------TNIETKALDARKVHEKF---- 317 (444)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC------CeEEEEeCCcccccchh----
Confidence 46788999999999999999999875567999999999999999999988 54 67999999976522111
Q ss_pred cCCceeEEecCcc
Q psy5757 106 KFDRYDFLPHAPA 118 (139)
Q Consensus 106 ~~~~~D~vi~~~~ 118 (139)
.++||+|+++++
T Consensus 318 -~~~fD~Vl~D~P 329 (444)
T PRK14902 318 -AEKFDKILVDAP 329 (444)
T ss_pred -cccCCEEEEcCC
Confidence 156999999876
No 133
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=99.15 E-value=5e-10 Score=85.23 Aligned_cols=95 Identities=14% Similarity=0.176 Sum_probs=70.1
Q ss_pred HHHHHHHHhcccCC-CCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEc
Q psy5757 15 AILTYLSIIQPHLN-ENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVAL 92 (139)
Q Consensus 15 ~~~~~~~~l~~~~~-~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~ 92 (139)
....+.+.+...+. .+.++||++||+|.++..+++... +++++|+++++++.|++++.. ++ .+++++.+
T Consensus 182 ~~~~l~~~v~~~~~~~~~~vlDl~~G~G~~sl~la~~~~---~v~~vE~~~~av~~a~~n~~~~~~------~~v~~~~~ 252 (353)
T TIGR02143 182 VNIKMLEWACEVTQGSKGDLLELYCGNGNFSLALAQNFR---RVLATEIAKPSVNAAQYNIAANNI------DNVQIIRM 252 (353)
T ss_pred HHHHHHHHHHHHhhcCCCcEEEEeccccHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHHHcCC------CcEEEEEc
Confidence 34455555543333 235799999999999999999875 899999999999999999988 44 68999999
Q ss_pred cchhhhHHHhhh--c---c-----CCceeEEecCcc
Q psy5757 93 GMIKRIETVELM--M---K-----FDRYDFLPHAPA 118 (139)
Q Consensus 93 d~~~~~~~~~~~--~---~-----~~~~D~vi~~~~ 118 (139)
|+.+.+...... . . ...+|+|+.+|+
T Consensus 253 d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPP 288 (353)
T TIGR02143 253 SAEEFTQAMNGVREFRRLKGIDLKSYNCSTIFVDPP 288 (353)
T ss_pred CHHHHHHHHhhccccccccccccccCCCCEEEECCC
Confidence 987644321000 0 0 113799999998
No 134
>PRK00811 spermidine synthase; Provisional
Probab=99.15 E-value=1.8e-10 Score=85.25 Aligned_cols=104 Identities=14% Similarity=0.116 Sum_probs=74.6
Q ss_pred CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757 28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMK 106 (139)
Q Consensus 28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 106 (139)
++.++||++|||+|..+..+++... ..+++++|+++.+++.|++.+.. +. ..+..++++++.+|+.+.+.. .
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~-~~~V~~VEid~~vv~~a~~~~~~~~~-~~~~d~rv~v~~~Da~~~l~~-----~ 147 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPS-VEKITLVEIDERVVEVCRKYLPEIAG-GAYDDPRVELVIGDGIKFVAE-----T 147 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCC-CCEEEEEeCCHHHHHHHHHHhHHhcc-ccccCCceEEEECchHHHHhh-----C
Confidence 4667999999999999999988642 34899999999999999998864 21 012357899999998764432 3
Q ss_pred CCceeEEecCccccccccc-------eeeeeeeccCCCC
Q psy5757 107 FDRYDFLPHAPAESWMNIP-------VCINYTATMPEGS 138 (139)
Q Consensus 107 ~~~~D~vi~~~~~~~~~~p-------~~~~~~~~~p~g~ 138 (139)
.++||+|+++.+-++.... .....+.+.|+|.
T Consensus 148 ~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGv 186 (283)
T PRK00811 148 ENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGI 186 (283)
T ss_pred CCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcE
Confidence 4689999998754432211 1233566677774
No 135
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.14 E-value=5.9e-10 Score=77.58 Aligned_cols=95 Identities=18% Similarity=0.188 Sum_probs=68.1
Q ss_pred HHHHHhcccC-CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccch
Q psy5757 18 TYLSIIQPHL-NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMI 95 (139)
Q Consensus 18 ~~~~~l~~~~-~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~ 95 (139)
.+-++|. .. .++.++||+.||||..+...+.+... +|+.+|.++.++...+++++. +. ..+++++..|..
T Consensus 31 alFniL~-~~~~~g~~vLDLFaGSGalGlEALSRGA~--~v~fVE~~~~a~~~i~~N~~~l~~-----~~~~~v~~~d~~ 102 (183)
T PF03602_consen 31 ALFNILQ-PRNLEGARVLDLFAGSGALGLEALSRGAK--SVVFVEKNRKAIKIIKKNLEKLGL-----EDKIRVIKGDAF 102 (183)
T ss_dssp HHHHHHH-CH-HTT-EEEETT-TTSHHHHHHHHTT-S--EEEEEES-HHHHHHHHHHHHHHT------GGGEEEEESSHH
T ss_pred HHHHHhc-ccccCCCeEEEcCCccCccHHHHHhcCCC--eEEEEECCHHHHHHHHHHHHHhCC-----CcceeeeccCHH
Confidence 3444443 23 57899999999999999988888754 999999999999999999998 55 346899999977
Q ss_pred hhhHHHhhhccCCceeEEecCcccccc
Q psy5757 96 KRIETVELMMKFDRYDFLPHAPAESWM 122 (139)
Q Consensus 96 ~~~~~~~~~~~~~~~D~vi~~~~~~~~ 122 (139)
..+.+.. ....+||+|+..|++..-
T Consensus 103 ~~l~~~~--~~~~~fDiIflDPPY~~~ 127 (183)
T PF03602_consen 103 KFLLKLA--KKGEKFDIIFLDPPYAKG 127 (183)
T ss_dssp HHHHHHH--HCTS-EEEEEE--STTSC
T ss_pred HHHHhhc--ccCCCceEEEECCCcccc
Confidence 6555432 235789999999997654
No 136
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.14 E-value=3.1e-10 Score=88.38 Aligned_cols=87 Identities=14% Similarity=0.121 Sum_probs=67.4
Q ss_pred HHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchh
Q psy5757 18 TYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIK 96 (139)
Q Consensus 18 ~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~ 96 (139)
.....+. ..++.+|||+|||+|..+..+++..+ .++++++|+++.+++.+++++.. +. +++++++|+.+
T Consensus 235 ~~~~~l~--~~~g~~VLDlgaG~G~~t~~la~~~~-~~~v~a~D~s~~~l~~~~~n~~~~g~-------~~~~~~~D~~~ 304 (427)
T PRK10901 235 LAATLLA--PQNGERVLDACAAPGGKTAHILELAP-QAQVVALDIDAQRLERVRENLQRLGL-------KATVIVGDARD 304 (427)
T ss_pred HHHHHcC--CCCCCEEEEeCCCCChHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHHHHcCC-------CeEEEEcCccc
Confidence 3344443 56889999999999999999999884 36999999999999999999988 43 36788899764
Q ss_pred hhHHHhhhccCCceeEEecCcc
Q psy5757 97 RIETVELMMKFDRYDFLPHAPA 118 (139)
Q Consensus 97 ~~~~~~~~~~~~~~D~vi~~~~ 118 (139)
+.. ....++||.|+++++
T Consensus 305 -~~~---~~~~~~fD~Vl~D~P 322 (427)
T PRK10901 305 -PAQ---WWDGQPFDRILLDAP 322 (427)
T ss_pred -chh---hcccCCCCEEEECCC
Confidence 211 112357999998876
No 137
>KOG2915|consensus
Probab=99.13 E-value=4.1e-10 Score=81.63 Aligned_cols=103 Identities=20% Similarity=0.318 Sum_probs=86.9
Q ss_pred HHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccc
Q psy5757 16 ILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGM 94 (139)
Q Consensus 16 ~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~ 94 (139)
++.++..|+ +.+|.+|+|-|+|+|+++.++++...|.++++.+|+.+...+.|.+.++. ++ .+++++.+.|+
T Consensus 94 ia~I~~~L~--i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi-----~~~vt~~hrDV 166 (314)
T KOG2915|consen 94 IAMILSMLE--IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGI-----GDNVTVTHRDV 166 (314)
T ss_pred HHHHHHHhc--CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCC-----CcceEEEEeec
Confidence 456677775 79999999999999999999999999999999999999999999999998 76 58999999996
Q ss_pred hhhhHHHhhhccCCceeEEecCccccccccceeee
Q psy5757 95 IKRIETVELMMKFDRYDFLPHAPAESWMNIPVCIN 129 (139)
Q Consensus 95 ~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p~~~~ 129 (139)
.. ..+..+..++|.|+...+--|...|-...
T Consensus 167 c~----~GF~~ks~~aDaVFLDlPaPw~AiPha~~ 197 (314)
T KOG2915|consen 167 CG----SGFLIKSLKADAVFLDLPAPWEAIPHAAK 197 (314)
T ss_pred cc----CCccccccccceEEEcCCChhhhhhhhHH
Confidence 54 22233456799999999988888776554
No 138
>KOG0820|consensus
Probab=99.12 E-value=7.7e-10 Score=80.23 Aligned_cols=92 Identities=21% Similarity=0.282 Sum_probs=74.2
Q ss_pred cChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEE
Q psy5757 11 GGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKF 89 (139)
Q Consensus 11 ~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~ 89 (139)
..+.++..+.+... ++++..|||+|.|||.+|..+.+... +|+++|+++.++...+++.+. .. ..+.++
T Consensus 42 kNp~v~~~I~~ka~--~k~tD~VLEvGPGTGnLT~~lLe~~k---kVvA~E~Dprmvael~krv~gtp~-----~~kLqV 111 (315)
T KOG0820|consen 42 KNPLVIDQIVEKAD--LKPTDVVLEVGPGTGNLTVKLLEAGK---KVVAVEIDPRMVAELEKRVQGTPK-----SGKLQV 111 (315)
T ss_pred cCHHHHHHHHhccC--CCCCCEEEEeCCCCCHHHHHHHHhcC---eEEEEecCcHHHHHHHHHhcCCCc-----cceeeE
Confidence 34555666666654 78999999999999999999999997 999999999999999998876 22 468999
Q ss_pred EEccchhhhHHHhhhccCCceeEEecCcccc
Q psy5757 90 VALGMIKRIETVELMMKFDRYDFLPHAPAES 120 (139)
Q Consensus 90 ~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~ 120 (139)
+++|+.+ .+.-.||.+|+|.+++
T Consensus 112 ~~gD~lK--------~d~P~fd~cVsNlPyq 134 (315)
T KOG0820|consen 112 LHGDFLK--------TDLPRFDGCVSNLPYQ 134 (315)
T ss_pred Eeccccc--------CCCcccceeeccCCcc
Confidence 9999754 1223599999998754
No 139
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=99.12 E-value=1.3e-09 Score=80.83 Aligned_cols=105 Identities=11% Similarity=0.170 Sum_probs=76.9
Q ss_pred HHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccch
Q psy5757 16 ILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMI 95 (139)
Q Consensus 16 ~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~ 95 (139)
...+++.+. ..++..++|++||.|+.+..+++..++.++|+|+|.|+++++.|++++.. ..+++++++|+.
T Consensus 8 l~Evl~~L~--~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~-------~~ri~~i~~~f~ 78 (296)
T PRK00050 8 LDEVVDALA--IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP-------FGRFTLVHGNFS 78 (296)
T ss_pred HHHHHHhhC--CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc-------CCcEEEEeCCHH
Confidence 455666664 46778999999999999999999986678999999999999999988754 268999999977
Q ss_pred hhhHHHhhhccCCceeEEecCcc--ccccccc-eeeeee
Q psy5757 96 KRIETVELMMKFDRYDFLPHAPA--ESWMNIP-VCINYT 131 (139)
Q Consensus 96 ~~~~~~~~~~~~~~~D~vi~~~~--~~~~~~p-~~~~~~ 131 (139)
+ +...... ...++|.|+++.- .+.+.++ .|+.|.
T Consensus 79 ~-l~~~l~~-~~~~vDgIl~DLGvSs~Qld~~~RGFSf~ 115 (296)
T PRK00050 79 N-LKEVLAE-GLGKVDGILLDLGVSSPQLDDAERGFSFR 115 (296)
T ss_pred H-HHHHHHc-CCCccCEEEECCCccccccCCCcCCcccC
Confidence 6 3322111 2237999988875 3333333 344453
No 140
>KOG3420|consensus
Probab=99.11 E-value=2.5e-10 Score=75.75 Aligned_cols=102 Identities=19% Similarity=0.221 Sum_probs=78.2
Q ss_pred hhcccccChHHHHHHHHHhcccC--CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccc
Q psy5757 5 KIGAAIGGISAILTYLSIIQPHL--NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLL 82 (139)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~l~~~~--~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~ 82 (139)
+.-+..++|++...|+..+-+-. ..|++++|+|||.|-++...+.-.. ..++|+|++|++++.+.+|+...
T Consensus 22 ~LEQY~T~p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~--e~vlGfDIdpeALEIf~rNaeEf----- 94 (185)
T KOG3420|consen 22 LLEQYPTRPHIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKN--ESVLGFDIDPEALEIFTRNAEEF----- 94 (185)
T ss_pred hhhhCCCcHHHHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhhcCCC--ceEEeeecCHHHHHHHhhchHHh-----
Confidence 44567788888888888885433 4789999999999999855554332 38999999999999999998871
Q ss_pred cCCcEEEEEccchhhhHHHhhhccCCceeEEecCcccc
Q psy5757 83 TDGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAES 120 (139)
Q Consensus 83 ~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~ 120 (139)
+-++++++.|+.+ .+ ...+.||.++.||+|.
T Consensus 95 -EvqidlLqcdild-le-----~~~g~fDtaviNppFG 125 (185)
T KOG3420|consen 95 -EVQIDLLQCDILD-LE-----LKGGIFDTAVINPPFG 125 (185)
T ss_pred -hhhhheeeeeccc-hh-----ccCCeEeeEEecCCCC
Confidence 1367888888665 21 2347799999999875
No 141
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.11 E-value=8.3e-10 Score=86.39 Aligned_cols=79 Identities=16% Similarity=0.190 Sum_probs=65.9
Q ss_pred CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757 27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMM 105 (139)
Q Consensus 27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 105 (139)
..++.+|||+|||+|+.+..+++.....++++++|+++.+++.+++++.. +. .+++++++|+.+. .
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~------~~v~~~~~Da~~~-~------ 314 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGI------TIIETIEGDARSF-S------ 314 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCC------CeEEEEeCccccc-c------
Confidence 46788999999999999999999876567999999999999999999988 54 6899999996541 1
Q ss_pred cCCceeEEecCcc
Q psy5757 106 KFDRYDFLPHAPA 118 (139)
Q Consensus 106 ~~~~~D~vi~~~~ 118 (139)
+..+||+|+++++
T Consensus 315 ~~~~fD~Vl~D~P 327 (445)
T PRK14904 315 PEEQPDAILLDAP 327 (445)
T ss_pred cCCCCCEEEEcCC
Confidence 2357999998654
No 142
>KOG1663|consensus
Probab=99.11 E-value=5.3e-10 Score=79.27 Aligned_cols=100 Identities=17% Similarity=0.214 Sum_probs=83.5
Q ss_pred ChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEE
Q psy5757 12 GISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFV 90 (139)
Q Consensus 12 ~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~ 90 (139)
++.....+...+. ....++++|+|.=||+-+..+|...++.++++++|+++...+.+.+..+. +. ..+++++
T Consensus 58 ~~d~g~fl~~li~--~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv-----~~KI~~i 130 (237)
T KOG1663|consen 58 GPDKGQFLQMLIR--LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGV-----DHKITFI 130 (237)
T ss_pred ChHHHHHHHHHHH--HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccc-----cceeeee
Confidence 4444444444443 46678999999999999999999999899999999999999999888887 76 6899999
Q ss_pred EccchhhhHHHhhhccCCceeEEecCcc
Q psy5757 91 ALGMIKRIETVELMMKFDRYDFLPHAPA 118 (139)
Q Consensus 91 ~~d~~~~~~~~~~~~~~~~~D~vi~~~~ 118 (139)
+++..+.+.++....+.++||++|...-
T Consensus 131 ~g~a~esLd~l~~~~~~~tfDfaFvDad 158 (237)
T KOG1663|consen 131 EGPALESLDELLADGESGTFDFAFVDAD 158 (237)
T ss_pred ecchhhhHHHHHhcCCCCceeEEEEccc
Confidence 9999998888766667789999988764
No 143
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.11 E-value=5.2e-10 Score=80.25 Aligned_cols=97 Identities=18% Similarity=0.252 Sum_probs=71.7
Q ss_pred CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccC
Q psy5757 28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKF 107 (139)
Q Consensus 28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 107 (139)
.++.+|||+|||+|.++..+++.. ++++++|+++.+++.++++..... .++++...|+.+ +. . ...
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~~------~~~~~~~~~~~~-~~---~-~~~ 112 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARLG---ADVTGIDASEENIEVARLHALESG------LKIDYRQTTAEE-LA---A-EHP 112 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcC---CeEEEEcCCHHHHHHHHHHHHHcC------CceEEEecCHHH-hh---h-hcC
Confidence 467899999999999999998864 389999999999999998876511 256777777543 21 1 124
Q ss_pred CceeEEecCccccccccceee---eeeeccCCCC
Q psy5757 108 DRYDFLPHAPAESWMNIPVCI---NYTATMPEGS 138 (139)
Q Consensus 108 ~~~D~vi~~~~~~~~~~p~~~---~~~~~~p~g~ 138 (139)
++||+|++...+++..++... ..+.+.|+|.
T Consensus 113 ~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~ 146 (233)
T PRK05134 113 GQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGL 146 (233)
T ss_pred CCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcE
Confidence 689999999998988776432 2455566663
No 144
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.11 E-value=1.1e-09 Score=85.34 Aligned_cols=81 Identities=16% Similarity=0.238 Sum_probs=67.6
Q ss_pred CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757 27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMM 105 (139)
Q Consensus 27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 105 (139)
..++.+|||+|||+|+.+..+++..++.++++++|+++.+++.+++++.+ +. .+++++++|+.+ +.. .
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~------~~v~~~~~Da~~-l~~----~ 303 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKL------SSIEIKIADAER-LTE----Y 303 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCC------CeEEEEECchhh-hhh----h
Confidence 57888999999999999999999986677999999999999999999988 54 678999999665 221 1
Q ss_pred cCCceeEEecCcc
Q psy5757 106 KFDRYDFLPHAPA 118 (139)
Q Consensus 106 ~~~~~D~vi~~~~ 118 (139)
..++||.|+++++
T Consensus 304 ~~~~fD~Vl~DaP 316 (431)
T PRK14903 304 VQDTFDRILVDAP 316 (431)
T ss_pred hhccCCEEEECCC
Confidence 1356999998766
No 145
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=99.09 E-value=4.7e-10 Score=76.41 Aligned_cols=76 Identities=20% Similarity=0.290 Sum_probs=55.5
Q ss_pred eEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhccCCc-
Q psy5757 32 KVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMKFDR- 109 (139)
Q Consensus 32 ~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~- 109 (139)
.|+|+.||.|+.+..+|+... +|+++|+++..++.|+.+++- +. .++++++++|+.+...++ ....
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~---~Viaidid~~~~~~a~hNa~vYGv-----~~~I~~i~gD~~~~~~~~----~~~~~ 69 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFD---RVIAIDIDPERLECAKHNAEVYGV-----ADNIDFICGDFFELLKRL----KSNKI 69 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT------GGGEEEEES-HHHHGGGB---------
T ss_pred EEEEeccCcCHHHHHHHHhCC---eEEEEECCHHHHHHHHHHHHHcCC-----CCcEEEEeCCHHHHHhhc----ccccc
Confidence 689999999999999999986 999999999999999999988 65 579999999976643322 2222
Q ss_pred eeEEecCccc
Q psy5757 110 YDFLPHAPAE 119 (139)
Q Consensus 110 ~D~vi~~~~~ 119 (139)
+|+|+.+|+.
T Consensus 70 ~D~vFlSPPW 79 (163)
T PF09445_consen 70 FDVVFLSPPW 79 (163)
T ss_dssp -SEEEE---B
T ss_pred ccEEEECCCC
Confidence 7999999984
No 146
>KOG3010|consensus
Probab=99.09 E-value=5.4e-11 Score=84.77 Aligned_cols=93 Identities=17% Similarity=0.276 Sum_probs=66.7
Q ss_pred eEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccCCcee
Q psy5757 32 KVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKFDRYD 111 (139)
Q Consensus 32 ~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~D 111 (139)
.++|+|||+|..++.+++..+ +|+|+|+++.|++.|++.....-+ --.......++ ..+....+++|
T Consensus 36 ~a~DvG~G~Gqa~~~iae~~k---~VIatD~s~~mL~~a~k~~~~~y~----~t~~~ms~~~~------v~L~g~e~SVD 102 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEHYK---EVIATDVSEAMLKVAKKHPPVTYC----HTPSTMSSDEM------VDLLGGEESVD 102 (261)
T ss_pred eEEEeccCCCcchHHHHHhhh---hheeecCCHHHHHHhhcCCCcccc----cCCcccccccc------ccccCCCccee
Confidence 789999999999999999987 999999999999988876432000 00111111111 11233467899
Q ss_pred EEecCccccccccc--eeeeeeeccCCC
Q psy5757 112 FLPHAPAESWMNIP--VCINYTATMPEG 137 (139)
Q Consensus 112 ~vi~~~~~~~~~~p--~~~~~~~~~p~g 137 (139)
+|++..++||+.-+ ....|+.++++|
T Consensus 103 lI~~Aqa~HWFdle~fy~~~~rvLRk~G 130 (261)
T KOG3010|consen 103 LITAAQAVHWFDLERFYKEAYRVLRKDG 130 (261)
T ss_pred eehhhhhHHhhchHHHHHHHHHHcCCCC
Confidence 99999999998865 455588888887
No 147
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.08 E-value=1e-09 Score=84.13 Aligned_cols=88 Identities=14% Similarity=0.153 Sum_probs=72.6
Q ss_pred HhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHH
Q psy5757 22 IIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIET 100 (139)
Q Consensus 22 ~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~ 100 (139)
++..... |++||++.|-||.++...+..... +|+++|.|..++++|++|+.. ++ ...++.++++|+.+.+..
T Consensus 211 ~l~~~~~-GkrvLNlFsYTGgfSv~Aa~gGA~--~vt~VD~S~~al~~a~~N~~LNg~----~~~~~~~i~~Dvf~~l~~ 283 (393)
T COG1092 211 ALGELAA-GKRVLNLFSYTGGFSVHAALGGAS--EVTSVDLSKRALEWARENAELNGL----DGDRHRFIVGDVFKWLRK 283 (393)
T ss_pred HHhhhcc-CCeEEEecccCcHHHHHHHhcCCC--ceEEEeccHHHHHHHHHHHHhcCC----CccceeeehhhHHHHHHH
Confidence 3333335 999999999999999999998754 999999999999999999998 53 346689999999987765
Q ss_pred HhhhccCCceeEEecCcc
Q psy5757 101 VELMMKFDRYDFLPHAPA 118 (139)
Q Consensus 101 ~~~~~~~~~~D~vi~~~~ 118 (139)
... ...+||+|+..|+
T Consensus 284 ~~~--~g~~fDlIilDPP 299 (393)
T COG1092 284 AER--RGEKFDLIILDPP 299 (393)
T ss_pred HHh--cCCcccEEEECCc
Confidence 432 3558999999997
No 148
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.08 E-value=5.5e-10 Score=79.76 Aligned_cols=104 Identities=14% Similarity=0.037 Sum_probs=72.4
Q ss_pred CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hcc------ccccCCcEEEEEccchhhhH
Q psy5757 27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNA------RLLTDGHIKFVALGMIKRIE 99 (139)
Q Consensus 27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~------~~~~~~~i~~~~~d~~~~~~ 99 (139)
..++.+|||+|||.|..+..|+++.- +|+|+|+|+.+++.+.+.... ... ......++++.++|+.+ +.
T Consensus 35 ~~~~~rvL~~gCG~G~da~~LA~~G~---~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~-l~ 110 (218)
T PRK13255 35 LPAGSRVLVPLCGKSLDMLWLAEQGH---EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFA-LT 110 (218)
T ss_pred CCCCCeEEEeCCCChHhHHHHHhCCC---eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccC-CC
Confidence 35678999999999999999999764 999999999999987432211 000 00113578999999765 21
Q ss_pred HHhhhccCCceeEEecCccccccccc-----eeeeeeeccCCCC
Q psy5757 100 TVELMMKFDRYDFLPHAPAESWMNIP-----VCINYTATMPEGS 138 (139)
Q Consensus 100 ~~~~~~~~~~~D~vi~~~~~~~~~~p-----~~~~~~~~~p~g~ 138 (139)
.....+||.|+...++|+++.. .....+.++|+|.
T Consensus 111 ----~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~ 150 (218)
T PRK13255 111 ----AADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCR 150 (218)
T ss_pred ----cccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCe
Confidence 1123579999998888877543 2344666777764
No 149
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.08 E-value=3e-10 Score=79.15 Aligned_cols=76 Identities=17% Similarity=0.329 Sum_probs=56.0
Q ss_pred CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhhh
Q psy5757 27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVELM 104 (139)
Q Consensus 27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~ 104 (139)
++++.+|||+|||+|.++..+++...+.++++++|+++.+ . .++++++++|+.+. .+.+...
T Consensus 30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~---------~-------~~~i~~~~~d~~~~~~~~~l~~~ 93 (188)
T TIGR00438 30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK---------P-------IENVDFIRGDFTDEEVLNKIRER 93 (188)
T ss_pred cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc---------c-------CCCceEEEeeCCChhHHHHHHHH
Confidence 5788999999999999999999988656689999999853 1 15677888886541 1112112
Q ss_pred ccCCceeEEecCcc
Q psy5757 105 MKFDRYDFLPHAPA 118 (139)
Q Consensus 105 ~~~~~~D~vi~~~~ 118 (139)
.+.++||+|+++.+
T Consensus 94 ~~~~~~D~V~~~~~ 107 (188)
T TIGR00438 94 VGDDKVDVVMSDAA 107 (188)
T ss_pred hCCCCccEEEcCCC
Confidence 23557999999764
No 150
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.08 E-value=9.4e-10 Score=90.33 Aligned_cols=81 Identities=6% Similarity=0.082 Sum_probs=66.4
Q ss_pred CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757 28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMK 106 (139)
Q Consensus 28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 106 (139)
.++++|||+|||+|.++..++.... .+|+++|+|+.+++.|++++.. ++ ...+++++++|+.+.+..+
T Consensus 537 ~~g~rVLDlf~gtG~~sl~aa~~Ga--~~V~~vD~s~~al~~a~~N~~~ng~----~~~~v~~i~~D~~~~l~~~----- 605 (702)
T PRK11783 537 AKGKDFLNLFAYTGTASVHAALGGA--KSTTTVDMSNTYLEWAERNFALNGL----SGRQHRLIQADCLAWLKEA----- 605 (702)
T ss_pred cCCCeEEEcCCCCCHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHhCC----CccceEEEEccHHHHHHHc-----
Confidence 4578999999999999999998753 2799999999999999999988 44 1147999999987744322
Q ss_pred CCceeEEecCccc
Q psy5757 107 FDRYDFLPHAPAE 119 (139)
Q Consensus 107 ~~~~D~vi~~~~~ 119 (139)
..+||+|+++|+.
T Consensus 606 ~~~fDlIilDPP~ 618 (702)
T PRK11783 606 REQFDLIFIDPPT 618 (702)
T ss_pred CCCcCEEEECCCC
Confidence 3579999999973
No 151
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.07 E-value=3.8e-10 Score=83.27 Aligned_cols=85 Identities=20% Similarity=0.239 Sum_probs=59.3
Q ss_pred CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCc-EEEEEccchhhhHHHhhhcc
Q psy5757 28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGH-IKFVALGMIKRIETVELMMK 106 (139)
Q Consensus 28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~-i~~~~~d~~~~~~~~~~~~~ 106 (139)
..|++|||||||+|+.+..++.+... .|+|+|.++......+-.-.. ++.+. +..+... ++.++.
T Consensus 114 L~gk~VLDIGC~nGY~~frM~~~GA~--~ViGiDP~~lf~~QF~~i~~~-----lg~~~~~~~lplg----vE~Lp~--- 179 (315)
T PF08003_consen 114 LKGKRVLDIGCNNGYYSFRMLGRGAK--SVIGIDPSPLFYLQFEAIKHF-----LGQDPPVFELPLG----VEDLPN--- 179 (315)
T ss_pred cCCCEEEEecCCCcHHHHHHhhcCCC--EEEEECCChHHHHHHHHHHHH-----hCCCccEEEcCcc----hhhccc---
Confidence 46889999999999999999998753 899999987765553222222 11122 3333222 444322
Q ss_pred CCceeEEecCccccccccce
Q psy5757 107 FDRYDFLPHAPAESWMNIPV 126 (139)
Q Consensus 107 ~~~~D~vi~~~~~~~~~~p~ 126 (139)
.++||+|+|-.++.|..+|.
T Consensus 180 ~~~FDtVF~MGVLYHrr~Pl 199 (315)
T PF08003_consen 180 LGAFDTVFSMGVLYHRRSPL 199 (315)
T ss_pred cCCcCEEEEeeehhccCCHH
Confidence 46799999999999999985
No 152
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.07 E-value=1.7e-09 Score=84.38 Aligned_cols=84 Identities=17% Similarity=0.166 Sum_probs=67.6
Q ss_pred CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757 27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMM 105 (139)
Q Consensus 27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 105 (139)
.+++.+|||+|||+|+.+..+++..+..++++++|+++.+++.+++++.+ +. .+++++++|+.+..... ..
T Consensus 250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~------~~v~~~~~D~~~~~~~~--~~ 321 (434)
T PRK14901 250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGL------KSIKILAADSRNLLELK--PQ 321 (434)
T ss_pred CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCC------CeEEEEeCChhhccccc--cc
Confidence 57789999999999999999999886667999999999999999999988 54 68999999966521100 01
Q ss_pred cCCceeEEecCcc
Q psy5757 106 KFDRYDFLPHAPA 118 (139)
Q Consensus 106 ~~~~~D~vi~~~~ 118 (139)
..++||.|+++++
T Consensus 322 ~~~~fD~Vl~DaP 334 (434)
T PRK14901 322 WRGYFDRILLDAP 334 (434)
T ss_pred ccccCCEEEEeCC
Confidence 1357999998765
No 153
>KOG1541|consensus
Probab=99.07 E-value=4e-10 Score=79.53 Aligned_cols=91 Identities=20% Similarity=0.345 Sum_probs=69.2
Q ss_pred HHHHHHHHHhcccCCC--CCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEE
Q psy5757 14 SAILTYLSIIQPHLNE--NSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVA 91 (139)
Q Consensus 14 ~~~~~~~~~l~~~~~~--~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~ 91 (139)
++..+.++.+. ++. ...|||||||||-.+..+.... . ..+|+|+|+.|++.|.+.-- .-+++.
T Consensus 35 em~eRaLELLa--lp~~~~~~iLDIGCGsGLSg~vL~~~G-h--~wiGvDiSpsML~~a~~~e~----------egdlil 99 (270)
T KOG1541|consen 35 EMAERALELLA--LPGPKSGLILDIGCGSGLSGSVLSDSG-H--QWIGVDISPSMLEQAVEREL----------EGDLIL 99 (270)
T ss_pred HHHHHHHHHhh--CCCCCCcEEEEeccCCCcchheeccCC-c--eEEeecCCHHHHHHHHHhhh----------hcCeee
Confidence 34667777775 444 5689999999999988888766 3 88999999999999987321 134677
Q ss_pred ccchhhhHHHhhhccCCceeEEecCcccccccc
Q psy5757 92 LGMIKRIETVELMMKFDRYDFLPHAPAESWMNI 124 (139)
Q Consensus 92 ~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~ 124 (139)
.|+=++++ ...++||-+|+-.+.+|+-.
T Consensus 100 ~DMG~Glp-----frpGtFDg~ISISAvQWLcn 127 (270)
T KOG1541|consen 100 CDMGEGLP-----FRPGTFDGVISISAVQWLCN 127 (270)
T ss_pred eecCCCCC-----CCCCccceEEEeeeeeeecc
Confidence 77655544 34689999999999999653
No 154
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.06 E-value=7.5e-10 Score=86.18 Aligned_cols=90 Identities=11% Similarity=0.049 Sum_probs=65.7
Q ss_pred HHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccch
Q psy5757 17 LTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMI 95 (139)
Q Consensus 17 ~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~ 95 (139)
..+...+. ..++.+|||+|||+|+.+..+++..+ .++++++|+++.+++.+++++++ +. ..++++..+|..
T Consensus 228 ~~~~~~L~--~~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~-----~~~v~~~~~d~~ 299 (426)
T TIGR00563 228 QWVATWLA--PQNEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGL-----TIKAETKDGDGR 299 (426)
T ss_pred HHHHHHhC--CCCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCC-----CeEEEEeccccc
Confidence 34455554 46789999999999999999999885 67999999999999999999988 54 123344556643
Q ss_pred hhhHHHhhhccCCceeEEecCcc
Q psy5757 96 KRIETVELMMKFDRYDFLPHAPA 118 (139)
Q Consensus 96 ~~~~~~~~~~~~~~~D~vi~~~~ 118 (139)
+ .. ......+||.|+++++
T Consensus 300 ~-~~---~~~~~~~fD~VllDaP 318 (426)
T TIGR00563 300 G-PS---QWAENEQFDRILLDAP 318 (426)
T ss_pred c-cc---ccccccccCEEEEcCC
Confidence 2 11 1012357999997654
No 155
>PLN02366 spermidine synthase
Probab=99.04 E-value=1.1e-09 Score=81.79 Aligned_cols=104 Identities=16% Similarity=0.099 Sum_probs=75.3
Q ss_pred CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757 28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMK 106 (139)
Q Consensus 28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 106 (139)
++.++||++|||.|.....+++.. +..+++.+|+++.+++.+++.+.. +. .+..++++++.+|+.+.+.+ .+
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~-~v~~V~~VEiD~~Vi~~ar~~f~~~~~--~~~dpRv~vi~~Da~~~l~~----~~ 162 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHS-SVEQIDICEIDKMVIDVSKKFFPDLAV--GFDDPRVNLHIGDGVEFLKN----AP 162 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhhhhhcc--ccCCCceEEEEChHHHHHhh----cc
Confidence 567899999999999999998874 334899999999999999998764 21 13457899999998764442 12
Q ss_pred CCceeEEecCccccccccc-------eeeeeeeccCCCC
Q psy5757 107 FDRYDFLPHAPAESWMNIP-------VCINYTATMPEGS 138 (139)
Q Consensus 107 ~~~~D~vi~~~~~~~~~~p-------~~~~~~~~~p~g~ 138 (139)
.++||+|++...-++.+.. .....+.+.|+|.
T Consensus 163 ~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGv 201 (308)
T PLN02366 163 EGTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGV 201 (308)
T ss_pred CCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcE
Confidence 4579999998765432211 2233556677774
No 156
>PRK03612 spermidine synthase; Provisional
Probab=99.02 E-value=1.1e-09 Score=87.28 Aligned_cols=105 Identities=14% Similarity=0.164 Sum_probs=74.1
Q ss_pred CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHH--HhhccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757 28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNI--LHSNARLLTDGHIKFVALGMIKRIETVELMM 105 (139)
Q Consensus 28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~--~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 105 (139)
++.++|||+|||+|..+..+++.. +..+++++|+|+++++.++++. ..-....+..++++++.+|+.+.+..
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~-~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~----- 369 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYP-DVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRK----- 369 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCC-CcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHh-----
Confidence 566899999999999999998753 2259999999999999999842 22000012347899999998764432
Q ss_pred cCCceeEEecCccccccccc--------eeeeeeeccCCCC
Q psy5757 106 KFDRYDFLPHAPAESWMNIP--------VCINYTATMPEGS 138 (139)
Q Consensus 106 ~~~~~D~vi~~~~~~~~~~p--------~~~~~~~~~p~g~ 138 (139)
..++||+|+++.+.++.+.+ .....+.++|+|.
T Consensus 370 ~~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~ 410 (521)
T PRK03612 370 LAEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGL 410 (521)
T ss_pred CCCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeE
Confidence 23579999999875543322 1233567777774
No 157
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=99.00 E-value=7.1e-09 Score=71.91 Aligned_cols=96 Identities=16% Similarity=0.181 Sum_probs=65.0
Q ss_pred hHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCc--------eEEEEeCCHHHHHHHHHHHHh-hcccccc
Q psy5757 13 ISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTG--------QVIGIEHVPQLVNSSIQNILH-SNARLLT 83 (139)
Q Consensus 13 ~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~--------~v~~~d~~~~~~~~a~~~~~~-~~~~~~~ 83 (139)
+.....++.... .+++..+||..||+|.+..+.+.....-. +++|.|+++.+++.|++++.. +.
T Consensus 14 ~~lA~~ll~la~--~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~----- 86 (179)
T PF01170_consen 14 PTLAAALLNLAG--WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGV----- 86 (179)
T ss_dssp HHHHHHHHHHTT----TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT------
T ss_pred HHHHHHHHHHhC--CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhccc-----
Confidence 333444444333 57888999999999999999888774222 289999999999999999988 65
Q ss_pred CCcEEEEEccchhhhHHHhhhccCCceeEEecCccccc
Q psy5757 84 DGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAESW 121 (139)
Q Consensus 84 ~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~ 121 (139)
...+++...|+.+ ++ ...+++|+|++||++..
T Consensus 87 ~~~i~~~~~D~~~-l~-----~~~~~~d~IvtnPPyG~ 118 (179)
T PF01170_consen 87 EDYIDFIQWDARE-LP-----LPDGSVDAIVTNPPYGR 118 (179)
T ss_dssp CGGEEEEE--GGG-GG-----GTTSBSCEEEEE--STT
T ss_pred CCceEEEecchhh-cc-----cccCCCCEEEECcchhh
Confidence 4568899989665 22 23568999999999664
No 158
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.00 E-value=2e-09 Score=79.12 Aligned_cols=103 Identities=13% Similarity=0.100 Sum_probs=73.0
Q ss_pred CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757 28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMK 106 (139)
Q Consensus 28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 106 (139)
+.+++||++|||+|..+..+++.. +..+++++|+++++++.+++.+.. +. .+..++++++.+|+.+.+.+ .
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~~~~--~~~~~~v~i~~~D~~~~l~~-----~ 142 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPSLAG--SYDDPRVDLQIDDGFKFLAD-----T 142 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHhhcc--cccCCceEEEECchHHHHHh-----C
Confidence 445699999999999999998875 234899999999999999998754 21 12346788999997664432 2
Q ss_pred CCceeEEecCccccccccc-------eeeeeeeccCCCC
Q psy5757 107 FDRYDFLPHAPAESWMNIP-------VCINYTATMPEGS 138 (139)
Q Consensus 107 ~~~~D~vi~~~~~~~~~~p-------~~~~~~~~~p~g~ 138 (139)
.++||+|+++...+..... .....+.+.|+|.
T Consensus 143 ~~~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~ 181 (270)
T TIGR00417 143 ENTFDVIIVDSTDPVGPAETLFTKEFYELLKKALNEDGI 181 (270)
T ss_pred CCCccEEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcE
Confidence 4679999998764432211 1233566777774
No 159
>KOG3191|consensus
Probab=98.99 E-value=2.6e-09 Score=73.31 Aligned_cols=77 Identities=18% Similarity=0.371 Sum_probs=66.0
Q ss_pred CCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccCCc
Q psy5757 30 NSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKFDR 109 (139)
Q Consensus 30 ~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~ 109 (139)
.+-++|||||||..+.+++....+.....+.|++|++++...+.+..+. .+++.++.|...+++ .++
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~------~~~~~V~tdl~~~l~-------~~~ 110 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNR------VHIDVVRTDLLSGLR-------NES 110 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcC------CccceeehhHHhhhc-------cCC
Confidence 5678999999999999999999888889999999999999888877632 568889999777665 278
Q ss_pred eeEEecCccc
Q psy5757 110 YDFLPHAPAE 119 (139)
Q Consensus 110 ~D~vi~~~~~ 119 (139)
+|+++.||++
T Consensus 111 VDvLvfNPPY 120 (209)
T KOG3191|consen 111 VDVLVFNPPY 120 (209)
T ss_pred ccEEEECCCc
Confidence 9999999984
No 160
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.99 E-value=1.8e-09 Score=66.42 Aligned_cols=95 Identities=14% Similarity=0.169 Sum_probs=66.6
Q ss_pred eEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccCCcee
Q psy5757 32 KVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKFDRYD 111 (139)
Q Consensus 32 ~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~D 111 (139)
+++|+|||+|..+..+++. ...+++++|.++..+..+++...... ..+++++..|..+... ....++|
T Consensus 1 ~ildig~G~G~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-----~~~~~~d 68 (107)
T cd02440 1 RVLDLGCGTGALALALASG--PGARVTGVDISPVALELARKAAAALL-----ADNVEVLKGDAEELPP-----EADESFD 68 (107)
T ss_pred CeEEEcCCccHHHHHHhcC--CCCEEEEEeCCHHHHHHHHHHHhccc-----ccceEEEEcChhhhcc-----ccCCceE
Confidence 4899999999999999882 34599999999999999986443311 3678899988655211 1245799
Q ss_pred EEecCccccc-cccce---eeeeeeccCCCC
Q psy5757 112 FLPHAPAESW-MNIPV---CINYTATMPEGS 138 (139)
Q Consensus 112 ~vi~~~~~~~-~~~p~---~~~~~~~~p~g~ 138 (139)
+++++.++++ ...+. ......+.|+|.
T Consensus 69 ~i~~~~~~~~~~~~~~~~l~~~~~~l~~~g~ 99 (107)
T cd02440 69 VIISDPPLHHLVEDLARFLEEARRLLKPGGV 99 (107)
T ss_pred EEEEccceeehhhHHHHHHHHHHHHcCCCCE
Confidence 9999999887 33222 222344556653
No 161
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.98 E-value=3.5e-09 Score=82.37 Aligned_cols=95 Identities=16% Similarity=0.169 Sum_probs=74.3
Q ss_pred ChHHHHHHHHHhcccC--CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEE
Q psy5757 12 GISAILTYLSIIQPHL--NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIK 88 (139)
Q Consensus 12 ~~~~~~~~~~~l~~~~--~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~ 88 (139)
.+.+...+..+..+++ .+++++||+-||.|.++..+++... +|+|+|+++++++.|+++++. +. .|++
T Consensus 274 N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~---~V~gvEi~~~aV~~A~~NA~~n~i------~N~~ 344 (432)
T COG2265 274 NPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRVK---KVHGVEISPEAVEAAQENAAANGI------DNVE 344 (432)
T ss_pred CHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccCC---EEEEEecCHHHHHHHHHHHHHcCC------CcEE
Confidence 3444455555554444 4678999999999999999998876 999999999999999999999 55 7899
Q ss_pred EEEccchhhhHHHhhhccCCceeEEecCcc
Q psy5757 89 FVALGMIKRIETVELMMKFDRYDFLPHAPA 118 (139)
Q Consensus 89 ~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~ 118 (139)
++.++..+...... ....+|+|+.+|+
T Consensus 345 f~~~~ae~~~~~~~---~~~~~d~VvvDPP 371 (432)
T COG2265 345 FIAGDAEEFTPAWW---EGYKPDVVVVDPP 371 (432)
T ss_pred EEeCCHHHHhhhcc---ccCCCCEEEECCC
Confidence 99999776433221 2346899999997
No 162
>PRK01581 speE spermidine synthase; Validated
Probab=98.98 E-value=2.3e-09 Score=81.35 Aligned_cols=106 Identities=12% Similarity=0.094 Sum_probs=72.4
Q ss_pred CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHH--HhhccccccCCcEEEEEccchhhhHHHhhh
Q psy5757 27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNI--LHSNARLLTDGHIKFVALGMIKRIETVELM 104 (139)
Q Consensus 27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~--~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 104 (139)
....++||++|||+|.....+.+.. +..+++++|+++++++.|++.. ....+..+..++++++++|+.+.+..
T Consensus 148 h~~PkrVLIIGgGdG~tlrelLk~~-~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~---- 222 (374)
T PRK01581 148 VIDPKRVLILGGGDGLALREVLKYE-TVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSS---- 222 (374)
T ss_pred CCCCCEEEEECCCHHHHHHHHHhcC-CCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHh----
Confidence 3556799999999999988888765 3459999999999999999732 11011113357999999998775442
Q ss_pred ccCCceeEEecCccccccc--------cceeeeeeeccCCCC
Q psy5757 105 MKFDRYDFLPHAPAESWMN--------IPVCINYTATMPEGS 138 (139)
Q Consensus 105 ~~~~~~D~vi~~~~~~~~~--------~p~~~~~~~~~p~g~ 138 (139)
..++||+|+++.+-.... +......+.+.|+|.
T Consensus 223 -~~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV 263 (374)
T PRK01581 223 -PSSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGA 263 (374)
T ss_pred -cCCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcE
Confidence 245799999996422110 112233566777774
No 163
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.97 E-value=2.7e-09 Score=85.06 Aligned_cols=111 Identities=9% Similarity=0.105 Sum_probs=80.1
Q ss_pred hhcccccChHHHHHHHHHhcccCC-----CCCeEEEEcccCChhHHHHHHHcCC-------CceEEEEeCCHHHHHHHHH
Q psy5757 5 KIGAAIGGISAILTYLSIIQPHLN-----ENSKVLEIGSGSGYLTNMISELMNS-------TGQVIGIEHVPQLVNSSIQ 72 (139)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~iLdiG~G~G~~~~~l~~~~~~-------~~~v~~~d~~~~~~~~a~~ 72 (139)
..|+.++++.++..+++.+.+... ...+|+|.+||+|.+...+++.... ..+++++|+++.++..++.
T Consensus 2 ~~GqfyTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~ 81 (524)
T TIGR02987 2 AYGTFFTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKK 81 (524)
T ss_pred CCcccCCcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHH
Confidence 468999999999999998854322 4468999999999999999887631 2478999999999999999
Q ss_pred HHHh-hccccccCCcEEEEEccchhhhHHHhhhccCCceeEEecCcccccc
Q psy5757 73 NILH-SNARLLTDGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAESWM 122 (139)
Q Consensus 73 ~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~ 122 (139)
++.. +. ..+.+...|........ .....+.||+|+.||++...
T Consensus 82 ~l~~~~~------~~~~i~~~d~l~~~~~~-~~~~~~~fD~IIgNPPy~~~ 125 (524)
T TIGR02987 82 LLGEFAL------LEINVINFNSLSYVLLN-IESYLDLFDIVITNPPYGRL 125 (524)
T ss_pred HHhhcCC------CCceeeecccccccccc-cccccCcccEEEeCCCcccc
Confidence 8876 21 23455656544211100 11123579999999997654
No 164
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.97 E-value=1.4e-08 Score=70.42 Aligned_cols=84 Identities=17% Similarity=0.207 Sum_probs=69.3
Q ss_pred CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757 28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMK 106 (139)
Q Consensus 28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 106 (139)
-.+.++||+.+|||.++...+.+... +++.+|.+..+....++|++. +. ..+.+++..|....++++..
T Consensus 42 i~g~~~LDlFAGSGaLGlEAlSRGA~--~~~~vE~~~~a~~~l~~N~~~l~~-----~~~~~~~~~da~~~L~~~~~--- 111 (187)
T COG0742 42 IEGARVLDLFAGSGALGLEALSRGAA--RVVFVEKDRKAVKILKENLKALGL-----EGEARVLRNDALRALKQLGT--- 111 (187)
T ss_pred cCCCEEEEecCCccHhHHHHHhCCCc--eEEEEecCHHHHHHHHHHHHHhCC-----ccceEEEeecHHHHHHhcCC---
Confidence 56789999999999999999999854 999999999999999999988 54 47888999997754443211
Q ss_pred CCceeEEecCccccc
Q psy5757 107 FDRYDFLPHAPAESW 121 (139)
Q Consensus 107 ~~~~D~vi~~~~~~~ 121 (139)
-..||+|+..|++++
T Consensus 112 ~~~FDlVflDPPy~~ 126 (187)
T COG0742 112 REPFDLVFLDPPYAK 126 (187)
T ss_pred CCcccEEEeCCCCcc
Confidence 125999999999984
No 165
>KOG4300|consensus
Probab=98.95 E-value=5.6e-10 Score=78.13 Aligned_cols=97 Identities=15% Similarity=0.154 Sum_probs=73.2
Q ss_pred CeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEE-EEEccchhhhHHHhhhccCCc
Q psy5757 31 SKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIK-FVALGMIKRIETVELMMKFDR 109 (139)
Q Consensus 31 ~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~-~~~~d~~~~~~~~~~~~~~~~ 109 (139)
..+||+|||||..-.+.-- .|.++|+++|.++.|-+.+.+.+..+. ..++. +++++..+ ++++ ..++
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~--~p~~svt~lDpn~~mee~~~ks~~E~k-----~~~~~~fvva~ge~-l~~l----~d~s 145 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPW--KPINSVTCLDPNEKMEEIADKSAAEKK-----PLQVERFVVADGEN-LPQL----ADGS 145 (252)
T ss_pred cceEEecccCCCCcccccC--CCCceEEEeCCcHHHHHHHHHHHhhcc-----CcceEEEEeechhc-Cccc----ccCC
Confidence 3689999999987655432 245699999999999999999887722 35666 88888655 4433 4678
Q ss_pred eeEEecCccccccccceeee---eeeccCCCCC
Q psy5757 110 YDFLPHAPAESWMNIPVCIN---YTATMPEGSY 139 (139)
Q Consensus 110 ~D~vi~~~~~~~~~~p~~~~---~~~~~p~g~~ 139 (139)
+|+|++..++=-..+|.... -+.+.|||.|
T Consensus 146 ~DtVV~TlvLCSve~~~k~L~e~~rlLRpgG~i 178 (252)
T KOG4300|consen 146 YDTVVCTLVLCSVEDPVKQLNEVRRLLRPGGRI 178 (252)
T ss_pred eeeEEEEEEEeccCCHHHHHHHHHHhcCCCcEE
Confidence 99999999988888876443 6778888864
No 166
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.95 E-value=2.4e-08 Score=73.84 Aligned_cols=82 Identities=13% Similarity=0.176 Sum_probs=62.6
Q ss_pred CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757 28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMK 106 (139)
Q Consensus 28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 106 (139)
..+++|||+.|-||+++...+..... +|+++|.|..+++++++++.. ++ ...+++++..|+.+.+.++..
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~gGA~--~v~~VD~S~~al~~a~~N~~lNg~----~~~~~~~~~~Dvf~~l~~~~~--- 192 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAGGAK--EVVSVDSSKRALEWAKENAALNGL----DLDRHRFIQGDVFKFLKRLKK--- 192 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHTTES--EEEEEES-HHHHHHHHHHHHHTT-----CCTCEEEEES-HHHHHHHHHH---
T ss_pred cCCCceEEecCCCCHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHcCC----CccceEEEecCHHHHHHHHhc---
Confidence 45789999999999999998876643 899999999999999999988 43 346899999999886665432
Q ss_pred CCceeEEecCcc
Q psy5757 107 FDRYDFLPHAPA 118 (139)
Q Consensus 107 ~~~~D~vi~~~~ 118 (139)
.++||+||+.|+
T Consensus 193 ~~~fD~IIlDPP 204 (286)
T PF10672_consen 193 GGRFDLIILDPP 204 (286)
T ss_dssp TT-EEEEEE--S
T ss_pred CCCCCEEEECCC
Confidence 358999999998
No 167
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.94 E-value=1e-08 Score=75.14 Aligned_cols=100 Identities=18% Similarity=0.246 Sum_probs=77.3
Q ss_pred hhcc-cccChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhcccccc
Q psy5757 5 KIGA-AIGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLT 83 (139)
Q Consensus 5 ~~~~-~~~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~ 83 (139)
++|+ ++..+.++..+++.+. +.++..|||+|+|.|.+|..+.+... +++++|+++.+++..++.+..
T Consensus 7 ~~gQnFL~~~~~~~~Iv~~~~--~~~~~~VlEiGpG~G~lT~~L~~~~~---~v~~vE~d~~~~~~L~~~~~~------- 74 (262)
T PF00398_consen 7 SLGQNFLVDPNIADKIVDALD--LSEGDTVLEIGPGPGALTRELLKRGK---RVIAVEIDPDLAKHLKERFAS------- 74 (262)
T ss_dssp GCTSSEEEHHHHHHHHHHHHT--CGTTSEEEEESSTTSCCHHHHHHHSS---EEEEEESSHHHHHHHHHHCTT-------
T ss_pred CCCcCeeCCHHHHHHHHHhcC--CCCCCEEEEeCCCCccchhhHhcccC---cceeecCcHhHHHHHHHHhhh-------
Confidence 4567 4457777888888886 56889999999999999999999984 999999999999999887754
Q ss_pred CCcEEEEEccchhhhHHHhhhccCCceeEEecCccc
Q psy5757 84 DGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAE 119 (139)
Q Consensus 84 ~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~ 119 (139)
.++++++.+|+.+ +.... . -...-..|++|.++
T Consensus 75 ~~~~~vi~~D~l~-~~~~~-~-~~~~~~~vv~NlPy 107 (262)
T PF00398_consen 75 NPNVEVINGDFLK-WDLYD-L-LKNQPLLVVGNLPY 107 (262)
T ss_dssp CSSEEEEES-TTT-SCGGG-H-CSSSEEEEEEEETG
T ss_pred cccceeeecchhc-cccHH-h-hcCCceEEEEEecc
Confidence 4789999999876 32110 0 02346788888874
No 168
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.93 E-value=6e-09 Score=79.32 Aligned_cols=104 Identities=16% Similarity=0.209 Sum_probs=64.7
Q ss_pred hccccc-ChHHHHHHHHHhcccCC-CCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccc
Q psy5757 6 IGAAIG-GISAILTYLSIIQPHLN-ENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLL 82 (139)
Q Consensus 6 ~~~~~~-~~~~~~~~~~~l~~~~~-~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~ 82 (139)
+++++. .+.....+.+.+.+.+. .+..+||+.||.|.++..++.... +|+|+|+++++++.|++++.. ++
T Consensus 171 ~~sFfQvN~~~~~~l~~~~~~~l~~~~~~vlDlycG~G~fsl~la~~~~---~V~gvE~~~~av~~A~~Na~~N~i---- 243 (352)
T PF05958_consen 171 PGSFFQVNPEQNEKLYEQALEWLDLSKGDVLDLYCGVGTFSLPLAKKAK---KVIGVEIVEEAVEDARENAKLNGI---- 243 (352)
T ss_dssp TTS---SBHHHHHHHHHHHHHHCTT-TTEEEEES-TTTCCHHHHHCCSS---EEEEEES-HHHHHHHHHHHHHTT-----
T ss_pred CCcCccCcHHHHHHHHHHHHHHhhcCCCcEEEEeecCCHHHHHHHhhCC---eEEEeeCCHHHHHHHHHHHHHcCC----
Confidence 344443 33345555555544443 223899999999999999999987 999999999999999999998 65
Q ss_pred cCCcEEEEEccchhhhHHHh----------hhccCCceeEEecCcc
Q psy5757 83 TDGHIKFVALGMIKRIETVE----------LMMKFDRYDFLPHAPA 118 (139)
Q Consensus 83 ~~~~i~~~~~d~~~~~~~~~----------~~~~~~~~D~vi~~~~ 118 (139)
.|++++.++..+....+. .......+|+|+..|+
T Consensus 244 --~n~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPP 287 (352)
T PF05958_consen 244 --DNVEFIRGDAEDFAKALAKAREFNRLKGIDLKSFKFDAVILDPP 287 (352)
T ss_dssp ---SEEEEE--SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE---
T ss_pred --CcceEEEeeccchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCC
Confidence 899999887654211110 0011236899999997
No 169
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.92 E-value=8.4e-09 Score=77.06 Aligned_cols=108 Identities=18% Similarity=0.229 Sum_probs=71.9
Q ss_pred hhcccccChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHc------CCCceEEEEeCCHHHHHHHHHHHHh-h
Q psy5757 5 KIGAAIGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELM------NSTGQVIGIEHVPQLVNSSIQNILH-S 77 (139)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~------~~~~~v~~~d~~~~~~~~a~~~~~~-~ 77 (139)
..|+.+++.+++..+.+++. ..++.+|+|.+||+|.+...+.+.. ....+++|+|+++.++..|+.++.. +
T Consensus 24 ~~G~~~TP~~i~~l~~~~~~--~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~ 101 (311)
T PF02384_consen 24 KLGQFYTPREIVDLMVKLLN--PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHG 101 (311)
T ss_dssp SCGGC---HHHHHHHHHHHT--T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTT
T ss_pred ccceeehHHHHHHHHHhhhh--ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhc
Confidence 45888999998999999885 5677899999999999999988753 1355999999999999999888754 3
Q ss_pred ccccccCCcEEEEEccchhhhHHHhhhccCCceeEEecCcccccc
Q psy5757 78 NARLLTDGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAESWM 122 (139)
Q Consensus 78 ~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~ 122 (139)
. ...+..+..+|...... .....+||+|++||++.-.
T Consensus 102 ~----~~~~~~i~~~d~l~~~~----~~~~~~~D~ii~NPPf~~~ 138 (311)
T PF02384_consen 102 I----DNSNINIIQGDSLENDK----FIKNQKFDVIIGNPPFGSK 138 (311)
T ss_dssp H----HCBGCEEEES-TTTSHS----CTST--EEEEEEE--CTCE
T ss_pred c----ccccccccccccccccc----cccccccccccCCCCcccc
Confidence 2 12445678888653111 1024579999999997655
No 170
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.91 E-value=1.7e-08 Score=68.48 Aligned_cols=101 Identities=20% Similarity=0.149 Sum_probs=76.5
Q ss_pred ccccc-ChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCC
Q psy5757 7 GAAIG-GISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDG 85 (139)
Q Consensus 7 ~~~~~-~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~ 85 (139)
|+..+ +.....+|...+. ...+..|||+|.|||-++.++.++.-+...++++|.|++......+.. +
T Consensus 27 GaI~PsSs~lA~~M~s~I~--pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~----------p 94 (194)
T COG3963 27 GAILPSSSILARKMASVID--PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY----------P 94 (194)
T ss_pred eeecCCcHHHHHHHHhccC--cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC----------C
Confidence 55444 4444666777776 477889999999999999999999866779999999999998887764 5
Q ss_pred cEEEEEccchhhhHHHhhhccCCceeEEecCcccc
Q psy5757 86 HIKFVALGMIKRIETVELMMKFDRYDFLPHAPAES 120 (139)
Q Consensus 86 ~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~ 120 (139)
.++++.+|+.+ +.....+.+...||.|||..++-
T Consensus 95 ~~~ii~gda~~-l~~~l~e~~gq~~D~viS~lPll 128 (194)
T COG3963 95 GVNIINGDAFD-LRTTLGEHKGQFFDSVISGLPLL 128 (194)
T ss_pred Cccccccchhh-HHHHHhhcCCCeeeeEEeccccc
Confidence 56688999776 44222233556799999988743
No 171
>KOG1499|consensus
Probab=98.90 E-value=7.9e-09 Score=77.34 Aligned_cols=99 Identities=14% Similarity=0.211 Sum_probs=74.1
Q ss_pred cCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhh
Q psy5757 26 HLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELM 104 (139)
Q Consensus 26 ~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 104 (139)
++.+++.|||+|||+|.++...++.+.. +|+++|.+ ++.+.|.+.... ++ ...++++.+.+.+ + .
T Consensus 57 ~lf~dK~VlDVGcGtGILS~F~akAGA~--~V~aVe~S-~ia~~a~~iv~~N~~-----~~ii~vi~gkvEd-i-----~ 122 (346)
T KOG1499|consen 57 HLFKDKTVLDVGCGTGILSMFAAKAGAR--KVYAVEAS-SIADFARKIVKDNGL-----EDVITVIKGKVED-I-----E 122 (346)
T ss_pred hhcCCCEEEEcCCCccHHHHHHHHhCcc--eEEEEech-HHHHHHHHHHHhcCc-----cceEEEeecceEE-E-----e
Confidence 4578899999999999999999999954 99999999 566889888887 54 3558999998655 2 2
Q ss_pred ccCCceeEEecCccccc------cccceeeeeeeccCCCC
Q psy5757 105 MKFDRYDFLPHAPAESW------MNIPVCINYTATMPEGS 138 (139)
Q Consensus 105 ~~~~~~D~vi~~~~~~~------~~~p~~~~~~~~~p~g~ 138 (139)
.|.+++|+++|-+--+| +...+-..=.+++|+|.
T Consensus 123 LP~eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~ 162 (346)
T KOG1499|consen 123 LPVEKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGL 162 (346)
T ss_pred cCccceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCce
Confidence 34688999999876443 23334444455666664
No 172
>KOG1271|consensus
Probab=98.85 E-value=1.7e-08 Score=69.52 Aligned_cols=91 Identities=14% Similarity=0.254 Sum_probs=66.3
Q ss_pred HHHHHHHHhcccC-----C-CCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcE
Q psy5757 15 AILTYLSIIQPHL-----N-ENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHI 87 (139)
Q Consensus 15 ~~~~~~~~l~~~~-----~-~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i 87 (139)
...++++++.++. . ...+|||+|||+|.+...|++..- ...++|+|.|+.+++.|+..+.+ +. ...+
T Consensus 47 ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf-~~~L~GvDYs~~AV~LA~niAe~~~~-----~n~I 120 (227)
T KOG1271|consen 47 AEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGF-QSKLTGVDYSEKAVELAQNIAERDGF-----SNEI 120 (227)
T ss_pred HHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcC-CCCccccccCHHHHHHHHHHHHhcCC-----Ccce
Confidence 3456666665432 2 233999999999999999999874 44799999999999999999888 65 3349
Q ss_pred EEEEccchhhhHHHhhhccCCceeEEecCc
Q psy5757 88 KFVALGMIKRIETVELMMKFDRYDFLPHAP 117 (139)
Q Consensus 88 ~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~ 117 (139)
+|.+.|+.+. . ...++||+|.--.
T Consensus 121 ~f~q~DI~~~-~-----~~~~qfdlvlDKG 144 (227)
T KOG1271|consen 121 RFQQLDITDP-D-----FLSGQFDLVLDKG 144 (227)
T ss_pred eEEEeeccCC-c-----ccccceeEEeecC
Confidence 9999997762 1 1235577774433
No 173
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.85 E-value=4.4e-08 Score=68.88 Aligned_cols=82 Identities=18% Similarity=0.257 Sum_probs=63.5
Q ss_pred CCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhccCC
Q psy5757 30 NSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMKFD 108 (139)
Q Consensus 30 ~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~ 108 (139)
...+||||||.|.+...+|... |+..++|+|+....+..+.+++.. ++ .|+.++++|+...+..+ .+.+
T Consensus 18 ~~l~lEIG~G~G~~l~~~A~~~-Pd~n~iGiE~~~~~v~~a~~~~~~~~l------~Nv~~~~~da~~~l~~~---~~~~ 87 (195)
T PF02390_consen 18 NPLILEIGCGKGEFLIELAKRN-PDINFIGIEIRKKRVAKALRKAEKRGL------KNVRFLRGDARELLRRL---FPPG 87 (195)
T ss_dssp CEEEEEET-TTSHHHHHHHHHS-TTSEEEEEES-HHHHHHHHHHHHHHTT------SSEEEEES-CTTHHHHH---STTT
T ss_pred CCeEEEecCCCCHHHHHHHHHC-CCCCEEEEecchHHHHHHHHHHHhhcc------cceEEEEccHHHHHhhc---ccCC
Confidence 3478999999999999999998 578999999999999999999888 65 89999999988755543 2346
Q ss_pred ceeEEecCccccc
Q psy5757 109 RYDFLPHAPAESW 121 (139)
Q Consensus 109 ~~D~vi~~~~~~~ 121 (139)
++|-|+.+.+=-|
T Consensus 88 ~v~~i~i~FPDPW 100 (195)
T PF02390_consen 88 SVDRIYINFPDPW 100 (195)
T ss_dssp SEEEEEEES----
T ss_pred chheEEEeCCCCC
Confidence 7899988876333
No 174
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.79 E-value=2.5e-09 Score=76.02 Aligned_cols=110 Identities=11% Similarity=0.211 Sum_probs=72.8
Q ss_pred ccChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEE
Q psy5757 10 IGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKF 89 (139)
Q Consensus 10 ~~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~ 89 (139)
++-|.....++.... ..+-.++||+|||||-.+..+..+.. +++|+|+|++|++.|.++=.+ +. .
T Consensus 108 Y~vP~~l~emI~~~~--~g~F~~~lDLGCGTGL~G~~lR~~a~---~ltGvDiS~nMl~kA~eKg~Y--------D~--L 172 (287)
T COG4976 108 YSVPELLAEMIGKAD--LGPFRRMLDLGCGTGLTGEALRDMAD---RLTGVDISENMLAKAHEKGLY--------DT--L 172 (287)
T ss_pred CccHHHHHHHHHhcc--CCccceeeecccCcCcccHhHHHHHh---hccCCchhHHHHHHHHhccch--------HH--H
Confidence 344555555555554 23367999999999999999999886 899999999999999876433 11 1
Q ss_pred EEccchhhhHHHhhhccCCceeEEecCccccccccceeee---eeeccCCCC
Q psy5757 90 VALGMIKRIETVELMMKFDRYDFLPHAPAESWMNIPVCIN---YTATMPEGS 138 (139)
Q Consensus 90 ~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p~~~~---~~~~~p~g~ 138 (139)
.+.+... +. .....+++|+|.+.-++.++-+..++. ...+.|+|.
T Consensus 173 ~~Aea~~-Fl---~~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGl 220 (287)
T COG4976 173 YVAEAVL-FL---EDLTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGL 220 (287)
T ss_pred HHHHHHH-Hh---hhccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCce
Confidence 2233221 11 112356799999988887776554333 444555553
No 175
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.78 E-value=3.9e-09 Score=75.22 Aligned_cols=102 Identities=19% Similarity=0.179 Sum_probs=78.0
Q ss_pred CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757 27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMM 105 (139)
Q Consensus 27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 105 (139)
.+.+.+|||.+.|.|+++...+++... +|+.+|.+|..++.|+-|... ++ ...+++++.+|..+.+++ .
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~rGA~--~VitvEkdp~VLeLa~lNPwSr~l----~~~~i~iilGD~~e~V~~----~ 201 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALERGAI--HVITVEKDPNVLELAKLNPWSREL----FEIAIKIILGDAYEVVKD----F 201 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHcCCc--EEEEEeeCCCeEEeeccCCCCccc----cccccEEecccHHHHHhc----C
Confidence 357899999999999999999998864 999999999999999888766 43 234789999997665543 4
Q ss_pred cCCceeEEecCcc-cccccc-----ceeeeeeeccCCCC
Q psy5757 106 KFDRYDFLPHAPA-ESWMNI-----PVCINYTATMPEGS 138 (139)
Q Consensus 106 ~~~~~D~vi~~~~-~~~~~~-----p~~~~~~~~~p~g~ 138 (139)
++.+||+|++.|+ |..... .....|+.++|+|.
T Consensus 202 ~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGr 240 (287)
T COG2521 202 DDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGR 240 (287)
T ss_pred CccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCc
Confidence 5678999999998 333222 23445677777775
No 176
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.77 E-value=8.2e-08 Score=67.66 Aligned_cols=84 Identities=15% Similarity=0.148 Sum_probs=59.5
Q ss_pred HhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHH
Q psy5757 22 IIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIET 100 (139)
Q Consensus 22 ~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~ 100 (139)
++...++++..|+|..||-|.++..+++..+ ...|+++|++|.+++.+++++.. ++ ..++..+.+|..+.+.
T Consensus 94 Ri~~~v~~~e~VlD~faGIG~f~l~~ak~~~-~~~V~A~d~Np~a~~~L~~Ni~lNkv-----~~~i~~~~~D~~~~~~- 166 (200)
T PF02475_consen 94 RIANLVKPGEVVLDMFAGIGPFSLPIAKHGK-AKRVYAVDLNPDAVEYLKENIRLNKV-----ENRIEVINGDAREFLP- 166 (200)
T ss_dssp HHHTC--TT-EEEETT-TTTTTHHHHHHHT--SSEEEEEES-HHHHHHHHHHHHHTT------TTTEEEEES-GGG----
T ss_pred HHHhcCCcceEEEEccCCccHHHHHHhhhcC-ccEEEEecCCHHHHHHHHHHHHHcCC-----CCeEEEEcCCHHHhcC-
Confidence 4444578899999999999999999999543 34899999999999999999998 55 4678999999765222
Q ss_pred HhhhccCCceeEEecCcc
Q psy5757 101 VELMMKFDRYDFLPHAPA 118 (139)
Q Consensus 101 ~~~~~~~~~~D~vi~~~~ 118 (139)
...+|.|+++.+
T Consensus 167 ------~~~~drvim~lp 178 (200)
T PF02475_consen 167 ------EGKFDRVIMNLP 178 (200)
T ss_dssp ------TT-EEEEEE--T
T ss_pred ------ccccCEEEECCh
Confidence 467999999987
No 177
>KOG1500|consensus
Probab=98.74 E-value=3.6e-08 Score=73.83 Aligned_cols=77 Identities=21% Similarity=0.361 Sum_probs=63.6
Q ss_pred CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccC
Q psy5757 28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKF 107 (139)
Q Consensus 28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 107 (139)
..++.|||+|||+|.++...+..... +|+++|.| +|.+.|++..+.++ + .++++++.|.+.+ +.++
T Consensus 176 F~~kiVlDVGaGSGILS~FAaqAGA~--~vYAvEAS-~MAqyA~~Lv~~N~---~-~~rItVI~GKiEd----ieLP--- 241 (517)
T KOG1500|consen 176 FQDKIVLDVGAGSGILSFFAAQAGAK--KVYAVEAS-EMAQYARKLVASNN---L-ADRITVIPGKIED----IELP--- 241 (517)
T ss_pred cCCcEEEEecCCccHHHHHHHHhCcc--eEEEEehh-HHHHHHHHHHhcCC---c-cceEEEccCcccc----ccCc---
Confidence 56789999999999999999998864 99999999 79999999888732 2 4889999998544 3233
Q ss_pred CceeEEecCcc
Q psy5757 108 DRYDFLPHAPA 118 (139)
Q Consensus 108 ~~~D~vi~~~~ 118 (139)
+++|++|+-|-
T Consensus 242 Ek~DviISEPM 252 (517)
T KOG1500|consen 242 EKVDVIISEPM 252 (517)
T ss_pred hhccEEEeccc
Confidence 67999999886
No 178
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.73 E-value=3.5e-08 Score=70.71 Aligned_cols=105 Identities=15% Similarity=0.080 Sum_probs=72.2
Q ss_pred CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-h------ccccccCCcEEEEEccchhhhHH
Q psy5757 28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-S------NARLLTDGHIKFVALGMIKRIET 100 (139)
Q Consensus 28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~------~~~~~~~~~i~~~~~d~~~~~~~ 100 (139)
.++.+||..|||.|.....|++..- +|+|+|+|+.+++.+.+.... . -.......++++.++|+.+ +..
T Consensus 42 ~~~~rvLvPgCGkg~D~~~LA~~G~---~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~-l~~ 117 (226)
T PRK13256 42 NDSSVCLIPMCGCSIDMLFFLSKGV---KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFN-LPK 117 (226)
T ss_pred CCCCeEEEeCCCChHHHHHHHhCCC---cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcC-CCc
Confidence 4568999999999999999999885 899999999999998663211 0 0000113578999999776 220
Q ss_pred HhhhccCCceeEEecCccccccccceeee-----eeeccCCCC
Q psy5757 101 VELMMKFDRYDFLPHAPAESWMNIPVCIN-----YTATMPEGS 138 (139)
Q Consensus 101 ~~~~~~~~~~D~vi~~~~~~~~~~p~~~~-----~~~~~p~g~ 138 (139)
.....++||+|+-..+|+-++...+.. ...+.|+|.
T Consensus 118 --~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~ 158 (226)
T PRK13256 118 --IANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQ 158 (226)
T ss_pred --cccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcE
Confidence 011235799999988888876554433 344555553
No 179
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=98.71 E-value=3.4e-07 Score=68.31 Aligned_cols=106 Identities=13% Similarity=0.189 Sum_probs=77.0
Q ss_pred HHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccch
Q psy5757 16 ILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMI 95 (139)
Q Consensus 16 ~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~ 95 (139)
...+++.+. ..++..++|..+|.|+.+..+++..+ .++|+|+|.++.+++.+++++... ..+++++++++.
T Consensus 9 l~Evl~~L~--~~~ggiyVD~TlG~GGHS~~iL~~l~-~g~vigiD~D~~Al~~ak~~L~~~------~~R~~~i~~nF~ 79 (305)
T TIGR00006 9 LDEVVEGLN--IKPDGIYIDCTLGFGGHSKAILEQLG-TGRLIGIDRDPQAIAFAKERLSDF------EGRVVLIHDNFA 79 (305)
T ss_pred HHHHHHhcC--cCCCCEEEEeCCCChHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHHhhc------CCcEEEEeCCHH
Confidence 455666664 46778999999999999999999885 489999999999999999987651 258999999977
Q ss_pred hhhHHHhhhccCCceeEEecCcc--ccccccc-eeeeee
Q psy5757 96 KRIETVELMMKFDRYDFLPHAPA--ESWMNIP-VCINYT 131 (139)
Q Consensus 96 ~~~~~~~~~~~~~~~D~vi~~~~--~~~~~~p-~~~~~~ 131 (139)
+ +..........++|.|+.+.- .+.+.+| .++.|+
T Consensus 80 ~-l~~~l~~~~~~~vDgIl~DLGvSS~Qld~~~RGFSf~ 117 (305)
T TIGR00006 80 N-FFEHLDELLVTKIDGILVDLGVSSPQLDDPERGFSFK 117 (305)
T ss_pred H-HHHHHHhcCCCcccEEEEeccCCHhhcCCCCCCCccC
Confidence 6 332222223457999988764 3333333 344443
No 180
>KOG2187|consensus
Probab=98.70 E-value=3.7e-08 Score=76.99 Aligned_cols=82 Identities=17% Similarity=0.221 Sum_probs=66.2
Q ss_pred CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757 27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMM 105 (139)
Q Consensus 27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 105 (139)
+..++.++|+.||||..+..+++... +|+|+|+++.++..|+++++. +. .|.+|+++...+.++.+..+
T Consensus 381 l~~~k~llDv~CGTG~iglala~~~~---~ViGvEi~~~aV~dA~~nA~~Ngi------sNa~Fi~gqaE~~~~sl~~~- 450 (534)
T KOG2187|consen 381 LPADKTLLDVCCGTGTIGLALARGVK---RVIGVEISPDAVEDAEKNAQINGI------SNATFIVGQAEDLFPSLLTP- 450 (534)
T ss_pred CCCCcEEEEEeecCCceehhhhcccc---ceeeeecChhhcchhhhcchhcCc------cceeeeecchhhccchhccc-
Confidence 57788999999999999999999997 899999999999999999998 66 89999999777655543222
Q ss_pred cCCcee-EEecCcc
Q psy5757 106 KFDRYD-FLPHAPA 118 (139)
Q Consensus 106 ~~~~~D-~vi~~~~ 118 (139)
..++=+ +++.+|+
T Consensus 451 ~~~~~~~v~iiDPp 464 (534)
T KOG2187|consen 451 CCDSETLVAIIDPP 464 (534)
T ss_pred CCCCCceEEEECCC
Confidence 222334 6677766
No 181
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.67 E-value=3.2e-08 Score=71.40 Aligned_cols=88 Identities=14% Similarity=0.207 Sum_probs=65.6
Q ss_pred CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757 27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMK 106 (139)
Q Consensus 27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 106 (139)
+.+..+|+|+|+|+|.++..++++. |..+++.+|. |+.++.+++ . ++++++.+|+.+. .+
T Consensus 98 ~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~v~~~~~~---~--------~rv~~~~gd~f~~-------~P 157 (241)
T PF00891_consen 98 FSGFKTVVDVGGGSGHFAIALARAY-PNLRATVFDL-PEVIEQAKE---A--------DRVEFVPGDFFDP-------LP 157 (241)
T ss_dssp TTTSSEEEEET-TTSHHHHHHHHHS-TTSEEEEEE--HHHHCCHHH---T--------TTEEEEES-TTTC-------CS
T ss_pred ccCccEEEeccCcchHHHHHHHHHC-CCCcceeecc-Hhhhhcccc---c--------cccccccccHHhh-------hc
Confidence 3456789999999999999999999 5889999999 678888877 3 7899999997542 22
Q ss_pred CCceeEEecCcccccccccee-----eeeeeccCC
Q psy5757 107 FDRYDFLPHAPAESWMNIPVC-----INYTATMPE 136 (139)
Q Consensus 107 ~~~~D~vi~~~~~~~~~~p~~-----~~~~~~~p~ 136 (139)
. +|+++...++|...+..+ ..+.+..|+
T Consensus 158 ~--~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg 190 (241)
T PF00891_consen 158 V--ADVYLLRHVLHDWSDEDCVKILRNAAAALKPG 190 (241)
T ss_dssp S--ESEEEEESSGGGS-HHHHHHHHHHHHHHSEEC
T ss_pred c--ccceeeehhhhhcchHHHHHHHHHHHHHhCCC
Confidence 3 999999999998887643 225555544
No 182
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.66 E-value=2.9e-07 Score=75.90 Aligned_cols=96 Identities=14% Similarity=0.114 Sum_probs=69.5
Q ss_pred HHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcC-----------------------------------------CC
Q psy5757 16 ILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMN-----------------------------------------ST 54 (139)
Q Consensus 16 ~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~-----------------------------------------~~ 54 (139)
...++. +..+.+++..++|.+||+|.+....+.... ..
T Consensus 178 Aaa~l~-~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~ 256 (702)
T PRK11783 178 AAAILL-RSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELP 256 (702)
T ss_pred HHHHHH-HcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccC
Confidence 344443 333335678999999999999988876310 12
Q ss_pred ceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhccCCceeEEecCccccc
Q psy5757 55 GQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAESW 121 (139)
Q Consensus 55 ~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~ 121 (139)
.+++|+|+++.+++.|++|+.. ++ ...+++.++|+.+ +. .....+++|+|++||++..
T Consensus 257 ~~i~G~Did~~av~~A~~N~~~~g~-----~~~i~~~~~D~~~-~~---~~~~~~~~d~IvtNPPYg~ 315 (702)
T PRK11783 257 SKFYGSDIDPRVIQAARKNARRAGV-----AELITFEVKDVAD-LK---NPLPKGPTGLVISNPPYGE 315 (702)
T ss_pred ceEEEEECCHHHHHHHHHHHHHcCC-----CcceEEEeCChhh-cc---cccccCCCCEEEECCCCcC
Confidence 3799999999999999999998 65 3568999999655 21 1222346999999999654
No 183
>KOG2899|consensus
Probab=98.66 E-value=2.3e-08 Score=71.60 Aligned_cols=49 Identities=27% Similarity=0.478 Sum_probs=43.7
Q ss_pred CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh
Q psy5757 27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH 76 (139)
Q Consensus 27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~ 76 (139)
...+..+|||||.+|.++..+++.+.+. .++|+||++..+..|++++..
T Consensus 56 ~f~~~~~LDIGCNsG~lt~~iak~F~~r-~iLGvDID~~LI~~Ark~~r~ 104 (288)
T KOG2899|consen 56 WFEPKQALDIGCNSGFLTLSIAKDFGPR-RILGVDIDPVLIQRARKEIRF 104 (288)
T ss_pred ccCcceeEeccCCcchhHHHHHHhhccc-eeeEeeccHHHHHHHHHhccc
Confidence 3566799999999999999999999754 799999999999999998754
No 184
>PLN02823 spermine synthase
Probab=98.65 E-value=2.2e-07 Score=70.34 Aligned_cols=83 Identities=11% Similarity=0.203 Sum_probs=64.7
Q ss_pred CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccC
Q psy5757 28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKF 107 (139)
Q Consensus 28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 107 (139)
+..++||.+|+|.|..+..+.+... ..+++.+|+++.+++.|++.+.... ..+..++++++.+|+.+.+++ ..
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~-~~~v~~VEiD~~vv~lar~~~~~~~-~~~~dprv~v~~~Da~~~L~~-----~~ 174 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKT-VEKVVMCDIDQEVVDFCRKHLTVNR-EAFCDKRLELIINDARAELEK-----RD 174 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCC-CCeEEEEECCHHHHHHHHHhccccc-ccccCCceEEEEChhHHHHhh-----CC
Confidence 4567999999999999999988653 3489999999999999999875410 003358999999998775542 24
Q ss_pred CceeEEecCc
Q psy5757 108 DRYDFLPHAP 117 (139)
Q Consensus 108 ~~~D~vi~~~ 117 (139)
++||+|+...
T Consensus 175 ~~yDvIi~D~ 184 (336)
T PLN02823 175 EKFDVIIGDL 184 (336)
T ss_pred CCccEEEecC
Confidence 6799999985
No 185
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.64 E-value=1.3e-07 Score=67.56 Aligned_cols=109 Identities=14% Similarity=0.197 Sum_probs=70.2
Q ss_pred hcccccChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh--hc-c---
Q psy5757 6 IGAAIGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH--SN-A--- 79 (139)
Q Consensus 6 ~~~~~~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~--~~-~--- 79 (139)
+...-.+|..+...-. +. .+++.+||..|||.|.....|+++.- +|+|+|+|+.+++.+.+.... .. .
T Consensus 17 w~~~~~~p~L~~~~~~-l~--~~~~~rvLvPgCG~g~D~~~La~~G~---~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~ 90 (218)
T PF05724_consen 17 WDQGEPNPALVEYLDS-LA--LKPGGRVLVPGCGKGYDMLWLAEQGH---DVVGVDLSPTAIEQAFEENNLEPTVTSVGG 90 (218)
T ss_dssp T--TTSTHHHHHHHHH-HT--TSTSEEEEETTTTTSCHHHHHHHTTE---EEEEEES-HHHHHHHHHHCTTEEECTTCTT
T ss_pred CCCCCCCHHHHHHHHh-cC--CCCCCeEEEeCCCChHHHHHHHHCCC---eEEEEecCHHHHHHHHHHhccCCCcccccc
Confidence 3344445554444333 32 46777999999999999999999874 999999999999998443221 10 0
Q ss_pred -ccccCCcEEEEEccchhhhHHHhhhccCCceeEEecCccccccccc
Q psy5757 80 -RLLTDGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAESWMNIP 125 (139)
Q Consensus 80 -~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p 125 (139)
......++++.++|+.+ +. ....++||+|+-..+++=++..
T Consensus 91 ~~~~~~~~i~~~~gDfF~-l~----~~~~g~fD~iyDr~~l~Alpp~ 132 (218)
T PF05724_consen 91 FKRYQAGRITIYCGDFFE-LP----PEDVGKFDLIYDRTFLCALPPE 132 (218)
T ss_dssp EEEETTSSEEEEES-TTT-GG----GSCHHSEEEEEECSSTTTS-GG
T ss_pred eeeecCCceEEEEccccc-CC----hhhcCCceEEEEecccccCCHH
Confidence 00123578999999876 22 1122479999988887766543
No 186
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.64 E-value=1.7e-07 Score=73.41 Aligned_cols=77 Identities=18% Similarity=0.267 Sum_probs=54.8
Q ss_pred CCeEEEEcccCChhHHHHHHHc---CCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757 30 NSKVLEIGSGSGYLTNMISELM---NSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMM 105 (139)
Q Consensus 30 ~~~iLdiG~G~G~~~~~l~~~~---~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 105 (139)
+..|+|+|||+|.++...++.. ....+|+++|.++.+...+++..+. ++ .++|+++++|+.+ ++ .
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w-----~~~V~vi~~d~r~-v~---l-- 255 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGW-----GDKVTVIHGDMRE-VE---L-- 255 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTT-----TTTEEEEES-TTT-SC---H--
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCC-----CCeEEEEeCcccC-CC---C--
Confidence 4689999999999988777664 2234999999999988888777555 54 4789999999776 32 1
Q ss_pred cCCceeEEecCcc
Q psy5757 106 KFDRYDFLPHAPA 118 (139)
Q Consensus 106 ~~~~~D~vi~~~~ 118 (139)
.+++|+|||=.-
T Consensus 256 -pekvDIIVSElL 267 (448)
T PF05185_consen 256 -PEKVDIIVSELL 267 (448)
T ss_dssp -SS-EEEEEE---
T ss_pred -CCceeEEEEecc
Confidence 358999988665
No 187
>KOG2730|consensus
Probab=98.63 E-value=1.9e-07 Score=66.14 Aligned_cols=91 Identities=14% Similarity=0.092 Sum_probs=71.6
Q ss_pred HHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccch
Q psy5757 17 LTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMI 95 (139)
Q Consensus 17 ~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~ 95 (139)
..+...... ......|+|..||.|+.+...+.... .|+++|+||.-+..|+.+++- +. .++++|++||++
T Consensus 83 ~~iA~~v~~-~~~~~~iidaf~g~gGntiqfa~~~~---~VisIdiDPikIa~AkhNaeiYGI-----~~rItFI~GD~l 153 (263)
T KOG2730|consen 83 EHIANRVVA-CMNAEVIVDAFCGVGGNTIQFALQGP---YVIAIDIDPVKIACARHNAEVYGV-----PDRITFICGDFL 153 (263)
T ss_pred HHHHHHHHH-hcCcchhhhhhhcCCchHHHHHHhCC---eEEEEeccHHHHHHHhccceeecC-----CceeEEEechHH
Confidence 344444432 22557899999999999999999885 899999999999999999998 87 569999999988
Q ss_pred hhhHHHhhhccCCceeEEecCcc
Q psy5757 96 KRIETVELMMKFDRYDFLPHAPA 118 (139)
Q Consensus 96 ~~~~~~~~~~~~~~~D~vi~~~~ 118 (139)
+.+..+.+. -+.+|+|+..++
T Consensus 154 d~~~~lq~~--K~~~~~vf~spp 174 (263)
T KOG2730|consen 154 DLASKLKAD--KIKYDCVFLSPP 174 (263)
T ss_pred HHHHHHhhh--hheeeeeecCCC
Confidence 866544332 234899988886
No 188
>KOG2940|consensus
Probab=98.63 E-value=3e-08 Score=70.72 Aligned_cols=97 Identities=14% Similarity=0.152 Sum_probs=71.7
Q ss_pred CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccC
Q psy5757 28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKF 107 (139)
Q Consensus 28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 107 (139)
+....++||||+.|+....+....-. +++..|.|..|++.++.--... -.+...++| =+.++ ...
T Consensus 71 k~fp~a~diGcs~G~v~rhl~~e~ve--kli~~DtS~~M~~s~~~~qdp~-------i~~~~~v~D----EE~Ld--f~e 135 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVKRHLRGEGVE--KLIMMDTSYDMIKSCRDAQDPS-------IETSYFVGD----EEFLD--FKE 135 (325)
T ss_pred hhCcceeecccchhhhhHHHHhcchh--heeeeecchHHHHHhhccCCCc-------eEEEEEecc----hhccc--ccc
Confidence 45678999999999999988877632 8999999999999887753221 234556666 23332 235
Q ss_pred CceeEEecCccccccccceeee---eeeccCCCCC
Q psy5757 108 DRYDFLPHAPAESWMNIPVCIN---YTATMPEGSY 139 (139)
Q Consensus 108 ~~~D~vi~~~~~~~~~~p~~~~---~~~~~p~g~~ 139 (139)
.++|++++..++||.++..+-. -..++|||.|
T Consensus 136 ns~DLiisSlslHW~NdLPg~m~~ck~~lKPDg~F 170 (325)
T KOG2940|consen 136 NSVDLIISSLSLHWTNDLPGSMIQCKLALKPDGLF 170 (325)
T ss_pred cchhhhhhhhhhhhhccCchHHHHHHHhcCCCccc
Confidence 6899999999999999865443 4578888864
No 189
>PRK04148 hypothetical protein; Provisional
Probab=98.62 E-value=3.4e-07 Score=60.41 Aligned_cols=72 Identities=14% Similarity=0.184 Sum_probs=50.4
Q ss_pred CCCCeEEEEcccCCh-hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757 28 NENSKVLEIGSGSGY-LTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMK 106 (139)
Q Consensus 28 ~~~~~iLdiG~G~G~-~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 106 (139)
.++++++|+|||+|. .+..|++... .|+++|+++..++.++++ .++++.+|.++.-..+
T Consensus 15 ~~~~kileIG~GfG~~vA~~L~~~G~---~ViaIDi~~~aV~~a~~~------------~~~~v~dDlf~p~~~~----- 74 (134)
T PRK04148 15 GKNKKIVELGIGFYFKVAKKLKESGF---DVIVIDINEKAVEKAKKL------------GLNAFVDDLFNPNLEI----- 74 (134)
T ss_pred ccCCEEEEEEecCCHHHHHHHHHCCC---EEEEEECCHHHHHHHHHh------------CCeEEECcCCCCCHHH-----
Confidence 345799999999996 8888887653 999999999988877664 2456777765421111
Q ss_pred CCceeEEecCccc
Q psy5757 107 FDRYDFLPHAPAE 119 (139)
Q Consensus 107 ~~~~D~vi~~~~~ 119 (139)
...+|+|.+-.+-
T Consensus 75 y~~a~liysirpp 87 (134)
T PRK04148 75 YKNAKLIYSIRPP 87 (134)
T ss_pred HhcCCEEEEeCCC
Confidence 2346777665553
No 190
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.62 E-value=1.2e-07 Score=66.62 Aligned_cols=98 Identities=12% Similarity=0.213 Sum_probs=70.8
Q ss_pred cCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchh--hhHHHhh
Q psy5757 26 HLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIK--RIETVEL 103 (139)
Q Consensus 26 ~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~--~~~~~~~ 103 (139)
.+++++.|+|+|+-.|+++..+++..++.+.|+++|+.| ... -+++.++++|+++ ...++..
T Consensus 42 i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p---------~~~-------~~~V~~iq~d~~~~~~~~~l~~ 105 (205)
T COG0293 42 LFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILP---------MKP-------IPGVIFLQGDITDEDTLEKLLE 105 (205)
T ss_pred eecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcc---------ccc-------CCCceEEeeeccCccHHHHHHH
Confidence 357889999999999999999999998777899999997 211 2679999999885 3344544
Q ss_pred hccCCceeEEecCcc----cccccc----------ceeeeeeeccCCCCC
Q psy5757 104 MMKFDRYDFLPHAPA----ESWMNI----------PVCINYTATMPEGSY 139 (139)
Q Consensus 104 ~~~~~~~D~vi~~~~----~~~~~~----------p~~~~~~~~~p~g~~ 139 (139)
......+|+|+|... .+|..| ...+....++|+|+|
T Consensus 106 ~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~f 155 (205)
T COG0293 106 ALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSF 155 (205)
T ss_pred HcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeE
Confidence 445556899998776 233222 233445667777764
No 191
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.60 E-value=3e-07 Score=70.74 Aligned_cols=76 Identities=16% Similarity=0.056 Sum_probs=62.0
Q ss_pred CCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhccCC
Q psy5757 30 NSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMKFD 108 (139)
Q Consensus 30 ~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~ 108 (139)
+.+|||++||+|..+..++...+ ..+|+++|+++.+++.++++++. ++ .++++..+|+.+.+.. .+
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N~~~N~~------~~~~v~~~Da~~~l~~------~~ 124 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETG-VEKVTLNDINPDAVELIKKNLELNGL------ENEKVFNKDANALLHE------ER 124 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCC------CceEEEhhhHHHHHhh------cC
Confidence 46899999999999999998764 34899999999999999999988 44 6677888996543221 34
Q ss_pred ceeEEecCcc
Q psy5757 109 RYDFLPHAPA 118 (139)
Q Consensus 109 ~~D~vi~~~~ 118 (139)
+||+|+.+|.
T Consensus 125 ~fD~V~lDP~ 134 (382)
T PRK04338 125 KFDVVDIDPF 134 (382)
T ss_pred CCCEEEECCC
Confidence 6999999984
No 192
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.55 E-value=5.2e-07 Score=64.76 Aligned_cols=78 Identities=17% Similarity=0.167 Sum_probs=65.1
Q ss_pred CeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhccCCc
Q psy5757 31 SKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMKFDR 109 (139)
Q Consensus 31 ~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~ 109 (139)
..+||||||.|.+...+|... |+..++|+|+....+..|.+.+.. ++ .|+.+++.|+.+.+..+. +.++
T Consensus 50 pi~lEIGfG~G~~l~~~A~~n-P~~nfiGiEi~~~~v~~~l~k~~~~~l------~Nlri~~~DA~~~l~~~~---~~~s 119 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKN-PEKNFLGIEIRVPGVAKALKKIKELGL------KNLRLLCGDAVEVLDYLI---PDGS 119 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHC-CCCCEEEEEEehHHHHHHHHHHHHcCC------CcEEEEcCCHHHHHHhcC---CCCC
Confidence 578999999999999999998 577999999999999999998888 54 699999999887555431 2347
Q ss_pred eeEEecCcc
Q psy5757 110 YDFLPHAPA 118 (139)
Q Consensus 110 ~D~vi~~~~ 118 (139)
+|-|+.+.+
T Consensus 120 l~~I~i~FP 128 (227)
T COG0220 120 LDKIYINFP 128 (227)
T ss_pred eeEEEEECC
Confidence 888877776
No 193
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.51 E-value=6.7e-07 Score=67.37 Aligned_cols=90 Identities=13% Similarity=0.148 Sum_probs=69.5
Q ss_pred HHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEc-c
Q psy5757 16 ILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVAL-G 93 (139)
Q Consensus 16 ~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~-d 93 (139)
.++..-.+. ++++|..+||--||||+........+. +++|.|++..|++-|+.|+.. +. +...+... |
T Consensus 185 lAR~mVNLa-~v~~G~~vlDPFcGTGgiLiEagl~G~---~viG~Did~~mv~gak~Nl~~y~i------~~~~~~~~~D 254 (347)
T COG1041 185 LARAMVNLA-RVKRGELVLDPFCGTGGILIEAGLMGA---RVIGSDIDERMVRGAKINLEYYGI------EDYPVLKVLD 254 (347)
T ss_pred HHHHHHHHh-ccccCCEeecCcCCccHHHHhhhhcCc---eEeecchHHHHHhhhhhhhhhhCc------CceeEEEecc
Confidence 444444454 489999999999999999999888765 999999999999999999998 54 55655554 7
Q ss_pred chhhhHHHhhhccCCceeEEecCccccc
Q psy5757 94 MIKRIETVELMMKFDRYDFLPHAPAESW 121 (139)
Q Consensus 94 ~~~~~~~~~~~~~~~~~D~vi~~~~~~~ 121 (139)
+.+ ++ + +..++|.|+..|+...
T Consensus 255 a~~-lp---l--~~~~vdaIatDPPYGr 276 (347)
T COG1041 255 ATN-LP---L--RDNSVDAIATDPPYGR 276 (347)
T ss_pred ccc-CC---C--CCCccceEEecCCCCc
Confidence 655 22 2 2346999999998554
No 194
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.51 E-value=6.7e-07 Score=67.54 Aligned_cols=80 Identities=18% Similarity=0.159 Sum_probs=67.3
Q ss_pred cCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhh
Q psy5757 26 HLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELM 104 (139)
Q Consensus 26 ~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 104 (139)
...+|..|+|.-||-|.++..++....+ .|+++|++|.+++.++++++. +. ...+..+++|..+...+
T Consensus 185 ~v~~GE~V~DmFAGVGpfsi~~Ak~g~~--~V~A~diNP~A~~~L~eNi~LN~v-----~~~v~~i~gD~rev~~~---- 253 (341)
T COG2520 185 LVKEGETVLDMFAGVGPFSIPIAKKGRP--KVYAIDINPDAVEYLKENIRLNKV-----EGRVEPILGDAREVAPE---- 253 (341)
T ss_pred hhcCCCEEEEccCCcccchhhhhhcCCc--eEEEEecCHHHHHHHHHHHHhcCc-----cceeeEEeccHHHhhhc----
Confidence 4577999999999999999999999865 599999999999999999998 54 34489999997763332
Q ss_pred ccCCceeEEecCcc
Q psy5757 105 MKFDRYDFLPHAPA 118 (139)
Q Consensus 105 ~~~~~~D~vi~~~~ 118 (139)
...+|-|+++.+
T Consensus 254 --~~~aDrIim~~p 265 (341)
T COG2520 254 --LGVADRIIMGLP 265 (341)
T ss_pred --cccCCEEEeCCC
Confidence 266999999987
No 195
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.50 E-value=5.1e-07 Score=71.85 Aligned_cols=99 Identities=15% Similarity=0.090 Sum_probs=73.7
Q ss_pred CCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhccC
Q psy5757 29 ENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMKF 107 (139)
Q Consensus 29 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 107 (139)
.+..+||||||.|.+...+|... |+..++|+|+....+..+.+.... ++ .|+.++..|+.. +. ...+.
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~-p~~~~iGiE~~~~~~~~~~~~~~~~~l------~N~~~~~~~~~~-~~---~~~~~ 415 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMN-PDALFIGVEVYLNGVANVLKLAGEQNI------TNFLLFPNNLDL-IL---NDLPN 415 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHcCC------CeEEEEcCCHHH-HH---HhcCc
Confidence 45688999999999999999998 577999999999999988888776 54 789888888543 22 22345
Q ss_pred CceeEEecCccccccccc-----------eeeeeeeccCCCC
Q psy5757 108 DRYDFLPHAPAESWMNIP-----------VCINYTATMPEGS 138 (139)
Q Consensus 108 ~~~D~vi~~~~~~~~~~p-----------~~~~~~~~~p~g~ 138 (139)
.++|.|+.+.+=-|-..- .......++|+|.
T Consensus 416 ~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~ 457 (506)
T PRK01544 416 NSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGN 457 (506)
T ss_pred ccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCE
Confidence 679999888875553321 2334566677764
No 196
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.50 E-value=1.2e-06 Score=66.33 Aligned_cols=92 Identities=13% Similarity=0.123 Sum_probs=58.8
Q ss_pred CCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hcccc---c-cCCcEEEEEccchhhhHHHhh
Q psy5757 29 ENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARL---L-TDGHIKFVALGMIKRIETVEL 103 (139)
Q Consensus 29 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~---~-~~~~i~~~~~d~~~~~~~~~~ 103 (139)
++.+|||+|||.|+...-.....- .+++|+|++...++.|+++... ..+.. . ......++.+|... ..+..
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i--~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~--~~l~~ 137 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKI--KHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFS--ESLRE 137 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCC--SHHHC
T ss_pred CCCeEEEecCCCchhHHHHHhcCC--CEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheecccccc--chhhh
Confidence 778999999999887776666532 2999999999999999999833 11000 0 01356778887653 12222
Q ss_pred hccC--CceeEEecCcccccccc
Q psy5757 104 MMKF--DRYDFLPHAPAESWMNI 124 (139)
Q Consensus 104 ~~~~--~~~D~vi~~~~~~~~~~ 124 (139)
.... .+||+|-+..++|++-.
T Consensus 138 ~~~~~~~~FDvVScQFalHY~Fe 160 (331)
T PF03291_consen 138 KLPPRSRKFDVVSCQFALHYAFE 160 (331)
T ss_dssp TSSSTTS-EEEEEEES-GGGGGS
T ss_pred hccccCCCcceeehHHHHHHhcC
Confidence 2233 48999999999998664
No 197
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.48 E-value=1.6e-06 Score=66.11 Aligned_cols=82 Identities=13% Similarity=0.214 Sum_probs=66.3
Q ss_pred CCCCeEEEEcccCChhHHHHHHHcCC-------------------------------Cc-------eEEEEeCCHHHHHH
Q psy5757 28 NENSKVLEIGSGSGYLTNMISELMNS-------------------------------TG-------QVIGIEHVPQLVNS 69 (139)
Q Consensus 28 ~~~~~iLdiG~G~G~~~~~l~~~~~~-------------------------------~~-------~v~~~d~~~~~~~~ 69 (139)
+++..++|.-||+|.+....+..... .+ .++|.|+++.+++.
T Consensus 190 ~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~ 269 (381)
T COG0116 190 KPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEG 269 (381)
T ss_pred CCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHH
Confidence 55579999999999999998887631 11 37799999999999
Q ss_pred HHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhccCCceeEEecCcccc
Q psy5757 70 SIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAES 120 (139)
Q Consensus 70 a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~ 120 (139)
|+.|+.. +. .+.++|.++|+.+ ++ .+.+.+|++||||+..
T Consensus 270 Ak~NA~~AGv-----~d~I~f~~~d~~~-l~-----~~~~~~gvvI~NPPYG 310 (381)
T COG0116 270 AKANARAAGV-----GDLIEFKQADATD-LK-----EPLEEYGVVISNPPYG 310 (381)
T ss_pred HHHHHHhcCC-----CceEEEEEcchhh-CC-----CCCCcCCEEEeCCCcc
Confidence 9999999 87 6789999999665 22 1236799999999955
No 198
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.47 E-value=1.2e-06 Score=62.12 Aligned_cols=61 Identities=18% Similarity=0.281 Sum_probs=50.1
Q ss_pred EEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhH
Q psy5757 33 VLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIE 99 (139)
Q Consensus 33 iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~ 99 (139)
|+||||..|+++.+|+++.. -.++++.|+++..++.|++++.. ++ .++++++.+|.++.+.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~-~~~~ia~DI~~gpL~~A~~~i~~~~l-----~~~i~~rlgdGL~~l~ 62 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGK-APKAIAVDINPGPLEKAKENIAKYGL-----EDRIEVRLGDGLEVLK 62 (205)
T ss_dssp EEEET-STTHHHHHHHHTTS-EEEEEEEESSHHHHHHHHHHHHHTT------TTTEEEEE-SGGGG--
T ss_pred CceeccchhHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHHcCC-----cccEEEEECCcccccC
Confidence 68999999999999999884 34899999999999999999998 76 5789999999766443
No 199
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.46 E-value=1.2e-06 Score=63.06 Aligned_cols=40 Identities=23% Similarity=0.286 Sum_probs=34.6
Q ss_pred CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHH
Q psy5757 28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNS 69 (139)
Q Consensus 28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~ 69 (139)
.+++.+||+|||+|.++..+++... .+++++|+++.++..
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~ga--~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQKGA--KEVYGVDVGYNQLAE 113 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHcCC--CEEEEEeCCHHHHHH
Confidence 4678999999999999999999842 389999999977765
No 200
>PRK10742 putative methyltransferase; Provisional
Probab=98.46 E-value=2.8e-06 Score=61.51 Aligned_cols=87 Identities=9% Similarity=0.104 Sum_probs=67.6
Q ss_pred CCCCC--eEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccC---CcEEEEEccchhhhHH
Q psy5757 27 LNENS--KVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTD---GHIKFVALGMIKRIET 100 (139)
Q Consensus 27 ~~~~~--~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~---~~i~~~~~d~~~~~~~ 100 (139)
++++. +|||+.+|+|..+..++.+.. +|+++|-++......++++++ .....+.. .+++++++|..+.+.+
T Consensus 84 lk~g~~p~VLD~TAGlG~Da~~las~G~---~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~ 160 (250)
T PRK10742 84 IKGDYLPDVVDATAGLGRDAFVLASVGC---RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTD 160 (250)
T ss_pred CCCCCCCEEEECCCCccHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhh
Confidence 46666 899999999999999999864 799999999999999988877 21111111 5789999998775543
Q ss_pred HhhhccCCceeEEecCccccc
Q psy5757 101 VELMMKFDRYDFLPHAPAESW 121 (139)
Q Consensus 101 ~~~~~~~~~~D~vi~~~~~~~ 121 (139)
..++||+|+..|.|.+
T Consensus 161 -----~~~~fDVVYlDPMfp~ 176 (250)
T PRK10742 161 -----ITPRPQVVYLDPMFPH 176 (250)
T ss_pred -----CCCCCcEEEECCCCCC
Confidence 1236999999998765
No 201
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.44 E-value=3.3e-06 Score=66.62 Aligned_cols=81 Identities=19% Similarity=0.228 Sum_probs=67.1
Q ss_pred CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757 27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMM 105 (139)
Q Consensus 27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 105 (139)
.+++.+|||++||.|+-+..++..++.++.+++.|+++..++.+++++.+ +. .|+.+...|... +.. .
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~------~nv~v~~~D~~~-~~~---~- 179 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGV------SNVALTHFDGRV-FGA---A- 179 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC------CeEEEEeCchhh-hhh---h-
Confidence 47889999999999999999999997778999999999999999999999 65 788888888654 211 1
Q ss_pred cCCceeEEecCcc
Q psy5757 106 KFDRYDFLPHAPA 118 (139)
Q Consensus 106 ~~~~~D~vi~~~~ 118 (139)
....||.|+...+
T Consensus 180 ~~~~fD~ILvDaP 192 (470)
T PRK11933 180 LPETFDAILLDAP 192 (470)
T ss_pred chhhcCeEEEcCC
Confidence 1246999986665
No 202
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.44 E-value=8.1e-06 Score=56.89 Aligned_cols=88 Identities=19% Similarity=0.198 Sum_probs=65.4
Q ss_pred HHHHHHhc--ccCCCCC-eEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEc
Q psy5757 17 LTYLSIIQ--PHLNENS-KVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVAL 92 (139)
Q Consensus 17 ~~~~~~l~--~~~~~~~-~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~ 92 (139)
..+.+-+. +.+.... +++|+|+|.|..+..++-.. |+.+++-+|.+..-+...+..... ++ +|++++++
T Consensus 33 ~Hi~DSL~~~~~~~~~~~~~lDiGSGaGfPGipLaI~~-p~~~~~LvEs~~KK~~FL~~~~~~L~L------~nv~v~~~ 105 (184)
T PF02527_consen 33 RHILDSLALLPFLPDFGKKVLDIGSGAGFPGIPLAIAR-PDLQVTLVESVGKKVAFLKEVVRELGL------SNVEVING 105 (184)
T ss_dssp HHHHHHHGGGGCS-CCCSEEEEETSTTTTTHHHHHHH--TTSEEEEEESSHHHHHHHHHHHHHHT-------SSEEEEES
T ss_pred HHHHHHHHhhhhhccCCceEEecCCCCCChhHHHHHhC-CCCcEEEEeCCchHHHHHHHHHHHhCC------CCEEEEEe
Confidence 34555553 2334434 89999999999999999988 577999999999999998888887 55 89999999
Q ss_pred cchhhhHHHhhhccCCceeEEecCcc
Q psy5757 93 GMIKRIETVELMMKFDRYDFLPHAPA 118 (139)
Q Consensus 93 d~~~~~~~~~~~~~~~~~D~vi~~~~ 118 (139)
.+.+ .....+||+|++..+
T Consensus 106 R~E~-------~~~~~~fd~v~aRAv 124 (184)
T PF02527_consen 106 RAEE-------PEYRESFDVVTARAV 124 (184)
T ss_dssp -HHH-------TTTTT-EEEEEEESS
T ss_pred eecc-------cccCCCccEEEeehh
Confidence 8443 123567999999887
No 203
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.43 E-value=1.8e-07 Score=63.69 Aligned_cols=72 Identities=8% Similarity=0.045 Sum_probs=54.1
Q ss_pred EEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhccCCceeEEecCcccccccccee---eeeeec
Q psy5757 58 IGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAESWMNIPVC---INYTAT 133 (139)
Q Consensus 58 ~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p~~---~~~~~~ 133 (139)
+|+|+|++|++.|+++... .. -...+++++++|+.+ + +.+.++||+|++..++|++.++.. ..++.+
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~---~~~~~i~~~~~d~~~----l--p~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvL 71 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKAR---SCYKCIEWIEGDAID----L--PFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVL 71 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccc---cCCCceEEEEechhh----C--CCCCCCeeEEEecchhhcCCCHHHHHHHHHHHc
Confidence 4899999999999877653 11 002479999999544 2 234568999999999999988754 448889
Q ss_pred cCCCC
Q psy5757 134 MPEGS 138 (139)
Q Consensus 134 ~p~g~ 138 (139)
+|+|.
T Consensus 72 kpGG~ 76 (160)
T PLN02232 72 KPGSR 76 (160)
T ss_pred CcCeE
Confidence 99985
No 204
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.43 E-value=4.9e-07 Score=62.76 Aligned_cols=70 Identities=21% Similarity=0.290 Sum_probs=57.8
Q ss_pred CeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhccCCc
Q psy5757 31 SKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMKFDR 109 (139)
Q Consensus 31 ~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~ 109 (139)
..+.|+|+|+|.++...+.... +|+++|.+|...+.|.+++.- + ..|++++.+|+.++ .+..
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A~---rViAiE~dPk~a~~a~eN~~v~g------~~n~evv~gDA~~y--------~fe~ 96 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAAE---RVIAIEKDPKRARLAEENLHVPG------DVNWEVVVGDARDY--------DFEN 96 (252)
T ss_pred hceeeccCCcchHHHHHHhhhc---eEEEEecCcHHHHHhhhcCCCCC------CcceEEEecccccc--------cccc
Confidence 6789999999999999999875 999999999999999999865 4 48999999997762 2345
Q ss_pred eeEEecCc
Q psy5757 110 YDFLPHAP 117 (139)
Q Consensus 110 ~D~vi~~~ 117 (139)
.|+|+|-.
T Consensus 97 ADvvicEm 104 (252)
T COG4076 97 ADVVICEM 104 (252)
T ss_pred cceeHHHH
Confidence 67776543
No 205
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.42 E-value=1.4e-06 Score=63.32 Aligned_cols=87 Identities=16% Similarity=0.295 Sum_probs=62.9
Q ss_pred CCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccCC
Q psy5757 29 ENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKFD 108 (139)
Q Consensus 29 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~ 108 (139)
...++||||+|.|..+..++..+. +|++.|.|+.|....+++ +.+++.. .+ +.+ ...
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~---~v~aTE~S~~Mr~rL~~k------------g~~vl~~--~~-w~~-----~~~ 150 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFK---EVYATEASPPMRWRLSKK------------GFTVLDI--DD-WQQ-----TDF 150 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcc---eEEeecCCHHHHHHHHhC------------CCeEEeh--hh-hhc-----cCC
Confidence 456899999999999999999997 899999999987665442 2333322 22 331 245
Q ss_pred ceeEEecCccccccccceee---eeeeccCCCC
Q psy5757 109 RYDFLPHAPAESWMNIPVCI---NYTATMPEGS 138 (139)
Q Consensus 109 ~~D~vi~~~~~~~~~~p~~~---~~~~~~p~g~ 138 (139)
+||+|.|-+++-...+|... .+..+.|.|.
T Consensus 151 ~fDvIscLNvLDRc~~P~~LL~~i~~~l~p~G~ 183 (265)
T PF05219_consen 151 KFDVISCLNVLDRCDRPLTLLRDIRRALKPNGR 183 (265)
T ss_pred ceEEEeehhhhhccCCHHHHHHHHHHHhCCCCE
Confidence 79999999998888877533 3556666664
No 206
>KOG1975|consensus
Probab=98.41 E-value=4.8e-07 Score=67.40 Aligned_cols=108 Identities=19% Similarity=0.122 Sum_probs=72.5
Q ss_pred CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhh-HHHhhhc
Q psy5757 28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRI-ETVELMM 105 (139)
Q Consensus 28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~-~~~~~~~ 105 (139)
+++..++++|||.|+..+..-+..-. +++|+||.+..++.|+++... ..+.--....+.++.+|....- ..+ .+.
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kAgI~--~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~-~e~ 192 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKAGIG--EYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDL-LEF 192 (389)
T ss_pred ccccccceeccCCcccHhHhhhhccc--ceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHh-ccC
Confidence 67788999999999877776665522 999999999999999999876 4321111134788999876522 211 111
Q ss_pred cCCceeEEecCcccccccc-------ceeeeeeeccCCCC
Q psy5757 106 KFDRYDFLPHAPAESWMNI-------PVCINYTATMPEGS 138 (139)
Q Consensus 106 ~~~~~D~vi~~~~~~~~~~-------p~~~~~~~~~p~g~ 138 (139)
+..+||+|-+..++|+.-. .++.....++|+|.
T Consensus 193 ~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~ 232 (389)
T KOG1975|consen 193 KDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGV 232 (389)
T ss_pred CCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcE
Confidence 2334999999999997543 12333455566654
No 207
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.37 E-value=2.3e-06 Score=59.00 Aligned_cols=88 Identities=18% Similarity=0.259 Sum_probs=52.3
Q ss_pred CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757 27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMM 105 (139)
Q Consensus 27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 105 (139)
...+.+|||+|||+|..+..++... ...+|+..|.++ .++.++.++.. +. ....++++...|--+... ....
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~-~~~~Vv~TD~~~-~l~~l~~Ni~~N~~---~~~~~v~v~~L~Wg~~~~--~~~~ 115 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLF-GAARVVLTDYNE-VLELLRRNIELNGS---LLDGRVSVRPLDWGDELD--SDLL 115 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT--T-SEEEEEE-S--HHHHHHHHHHTT-----------EEEE--TTS-HH--HHHH
T ss_pred hcCCceEEEECCccchhHHHHHhcc-CCceEEEeccch-hhHHHHHHHHhccc---cccccccCcEEEecCccc--cccc
Confidence 5678899999999999999999984 234999999998 99999999887 31 113567777776322111 1111
Q ss_pred cCCceeEEecCccccc
Q psy5757 106 KFDRYDFLPHAPAESW 121 (139)
Q Consensus 106 ~~~~~D~vi~~~~~~~ 121 (139)
...+||+|+..-+++.
T Consensus 116 ~~~~~D~IlasDv~Y~ 131 (173)
T PF10294_consen 116 EPHSFDVILASDVLYD 131 (173)
T ss_dssp S-SSBSEEEEES--S-
T ss_pred ccccCCEEEEecccch
Confidence 3457999988777553
No 208
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.36 E-value=3.3e-06 Score=64.86 Aligned_cols=76 Identities=14% Similarity=0.149 Sum_probs=61.9
Q ss_pred CeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhccCCc
Q psy5757 31 SKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMKFDR 109 (139)
Q Consensus 31 ~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~ 109 (139)
.+|||+.||+|..+..++.+.+.-.+|+++|+++.+++.+++|++. +. .++++++.|+...+.. ...+
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~------~~~~v~~~Da~~~l~~-----~~~~ 114 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSV------ENIEVPNEDAANVLRY-----RNRK 114 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCC------CcEEEEchhHHHHHHH-----hCCC
Confidence 5899999999999999999852123899999999999999999988 43 5788999997664432 1356
Q ss_pred eeEEecCc
Q psy5757 110 YDFLPHAP 117 (139)
Q Consensus 110 ~D~vi~~~ 117 (139)
||+|...|
T Consensus 115 fDvIdlDP 122 (374)
T TIGR00308 115 FHVIDIDP 122 (374)
T ss_pred CCEEEeCC
Confidence 99999998
No 209
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.35 E-value=3.9e-06 Score=62.11 Aligned_cols=80 Identities=14% Similarity=0.246 Sum_probs=66.2
Q ss_pred CeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhccCCc
Q psy5757 31 SKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMKFDR 109 (139)
Q Consensus 31 ~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~ 109 (139)
++||-+|-|.|++++.+.+... ..+++.+|+++..++.+++.+.. ..- ...++++++.+|+.+.+.+. ..+
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~-ve~i~~VEID~~Vi~~ar~~l~~~~~~--~~dpRv~i~i~Dg~~~v~~~-----~~~ 149 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLP-VERITMVEIDPAVIELARKYLPEPSGG--ADDPRVEIIIDDGVEFLRDC-----EEK 149 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCC-cceEEEEEcCHHHHHHHHHhccCcccc--cCCCceEEEeccHHHHHHhC-----CCc
Confidence 6999999999999999999984 45999999999999999999987 320 11589999999988866531 237
Q ss_pred eeEEecCcc
Q psy5757 110 YDFLPHAPA 118 (139)
Q Consensus 110 ~D~vi~~~~ 118 (139)
||+|+....
T Consensus 150 fDvIi~D~t 158 (282)
T COG0421 150 FDVIIVDST 158 (282)
T ss_pred CCEEEEcCC
Confidence 999999885
No 210
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.35 E-value=4.8e-06 Score=59.00 Aligned_cols=98 Identities=14% Similarity=0.205 Sum_probs=56.9
Q ss_pred HHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hcc-cc--ccCCcEEEE
Q psy5757 15 AILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNA-RL--LTDGHIKFV 90 (139)
Q Consensus 15 ~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~-~~--~~~~~i~~~ 90 (139)
.+..+++.+. +.++..++|+|||.|......+...+.+ +.+|+|+.+...+.|+..... ..+ .+ ....++++.
T Consensus 30 ~~~~il~~~~--l~~~dvF~DlGSG~G~~v~~aal~~~~~-~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~ 106 (205)
T PF08123_consen 30 FVSKILDELN--LTPDDVFYDLGSGVGNVVFQAALQTGCK-KSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELI 106 (205)
T ss_dssp HHHHHHHHTT----TT-EEEEES-TTSHHHHHHHHHH--S-EEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEE
T ss_pred HHHHHHHHhC--CCCCCEEEECCCCCCHHHHHHHHHcCCc-EEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceee
Confidence 4556666654 6788899999999999988888777542 699999999998888765443 110 11 123578889
Q ss_pred EccchhhhHHHhhhccCCceeEEecCcc
Q psy5757 91 ALGMIKRIETVELMMKFDRYDFLPHAPA 118 (139)
Q Consensus 91 ~~d~~~~~~~~~~~~~~~~~D~vi~~~~ 118 (139)
.+|+.+.-. ... .....|+|++|..
T Consensus 107 ~gdfl~~~~-~~~--~~s~AdvVf~Nn~ 131 (205)
T PF08123_consen 107 HGDFLDPDF-VKD--IWSDADVVFVNNT 131 (205)
T ss_dssp CS-TTTHHH-HHH--HGHC-SEEEE--T
T ss_pred ccCccccHh-Hhh--hhcCCCEEEEecc
Confidence 999876211 100 1133699999875
No 211
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.35 E-value=4.6e-06 Score=60.65 Aligned_cols=83 Identities=18% Similarity=0.238 Sum_probs=63.6
Q ss_pred CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757 28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMK 106 (139)
Q Consensus 28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 106 (139)
++.++||-||.|.|.....+.+... ..+++.+|+++..++.|++.+.. ... +..++++++.+|+...+.+ .
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~-~~~i~~VEiD~~Vv~~a~~~f~~~~~~--~~d~r~~i~~~Dg~~~l~~-----~ 146 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPP-VESITVVEIDPEVVELARKYFPEFSEG--LDDPRVRIIIGDGRKFLKE-----T 146 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT--SEEEEEES-HHHHHHHHHHTHHHHTT--GGSTTEEEEESTHHHHHHT-----S
T ss_pred CCcCceEEEcCCChhhhhhhhhcCC-cceEEEEecChHHHHHHHHhchhhccc--cCCCceEEEEhhhHHHHHh-----c
Confidence 5678999999999999999988763 34999999999999999998876 321 3457999999998775552 2
Q ss_pred CC-ceeEEecCcc
Q psy5757 107 FD-RYDFLPHAPA 118 (139)
Q Consensus 107 ~~-~~D~vi~~~~ 118 (139)
.+ +||+|+....
T Consensus 147 ~~~~yDvIi~D~~ 159 (246)
T PF01564_consen 147 QEEKYDVIIVDLT 159 (246)
T ss_dssp SST-EEEEEEESS
T ss_pred cCCcccEEEEeCC
Confidence 33 8999998765
No 212
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=98.34 E-value=1.6e-06 Score=61.41 Aligned_cols=79 Identities=20% Similarity=0.253 Sum_probs=63.8
Q ss_pred cCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhh
Q psy5757 26 HLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELM 104 (139)
Q Consensus 26 ~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 104 (139)
.++.+.+++|+||..|++..++.+... -..+++.|+++..++.|.+++.. ++ .++++...+|.+..++
T Consensus 13 ~V~~~~~iaDIGsDHAYLp~~Lv~~~~-~~~~va~eV~~gpl~~a~~~v~~~~l-----~~~i~vr~~dgl~~l~----- 81 (226)
T COG2384 13 LVKQGARIADIGSDHAYLPIYLVKNNP-ASTAVAGEVVPGPLESAIRNVKKNNL-----SERIDVRLGDGLAVLE----- 81 (226)
T ss_pred HHHcCCceeeccCchhHhHHHHHhcCC-cceEEEeecccCHHHHHHHHHHhcCC-----cceEEEeccCCccccC-----
Confidence 446677799999999999999999885 44899999999999999999998 66 5889999999765443
Q ss_pred ccCCceeEEecC
Q psy5757 105 MKFDRYDFLPHA 116 (139)
Q Consensus 105 ~~~~~~D~vi~~ 116 (139)
..+.+|+++..
T Consensus 82 -~~d~~d~ivIA 92 (226)
T COG2384 82 -LEDEIDVIVIA 92 (226)
T ss_pred -ccCCcCEEEEe
Confidence 23467776443
No 213
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=98.34 E-value=1.3e-05 Score=59.40 Aligned_cols=82 Identities=15% Similarity=0.202 Sum_probs=67.4
Q ss_pred CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757 27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMM 105 (139)
Q Consensus 27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 105 (139)
..++..|||.+++.|+-+..+++.+..++.+++.|+++.-+...++++++ +. .++.....|..+.... .
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~------~~v~~~~~D~~~~~~~----~ 152 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGV------FNVIVINADARKLDPK----K 152 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-------SSEEEEESHHHHHHHH----H
T ss_pred ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCC------ceEEEEeecccccccc----c
Confidence 57889999999999999999999998788999999999999999999999 65 7888888886552221 1
Q ss_pred cCCceeEEecCcc
Q psy5757 106 KFDRYDFLPHAPA 118 (139)
Q Consensus 106 ~~~~~D~vi~~~~ 118 (139)
....||.|+...+
T Consensus 153 ~~~~fd~VlvDaP 165 (283)
T PF01189_consen 153 PESKFDRVLVDAP 165 (283)
T ss_dssp HTTTEEEEEEECS
T ss_pred cccccchhhcCCC
Confidence 2335999988776
No 214
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=98.33 E-value=2.2e-06 Score=62.70 Aligned_cols=114 Identities=14% Similarity=0.250 Sum_probs=66.8
Q ss_pred HHHHHHHhcccCC-CCCeEEEEccc--CChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCc--EEEE
Q psy5757 16 ILTYLSIIQPHLN-ENSKVLEIGSG--SGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGH--IKFV 90 (139)
Q Consensus 16 ~~~~~~~l~~~~~-~~~~iLdiG~G--~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~--i~~~ 90 (139)
..+....+.. . .-..+|||||| |....-.+++...|+++|+-+|.+|-.+..++..+.. .++ ..++
T Consensus 56 l~RaVr~la~--~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~-------~~~g~t~~v 126 (267)
T PF04672_consen 56 LRRAVRYLAE--EAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLAD-------NPRGRTAYV 126 (267)
T ss_dssp HHHHHHHHHC--TT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT--------TTSEEEEE
T ss_pred HHHHHHHHHH--hcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcC-------CCCccEEEE
Confidence 3444444431 2 33579999999 4456777888888899999999999999999888766 244 8899
Q ss_pred EccchhhhHHH-h-----hhccCCceeEEecCcccccccc---ceeee--eeeccCCCCC
Q psy5757 91 ALGMIKRIETV-E-----LMMKFDRYDFLPHAPAESWMNI---PVCIN--YTATMPEGSY 139 (139)
Q Consensus 91 ~~d~~~~~~~~-~-----~~~~~~~~D~vi~~~~~~~~~~---p~~~~--~~~~~p~g~~ 139 (139)
.+|+.+ ...+ . .-..+++-=.++...++||+.| |.++. |+..+|.|||
T Consensus 127 ~aD~r~-p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~ 185 (267)
T PF04672_consen 127 QADLRD-PEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSY 185 (267)
T ss_dssp E--TT--HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-E
T ss_pred eCCCCC-HHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCce
Confidence 999887 2222 1 1112334457888899999976 33333 7888888886
No 215
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=98.31 E-value=3.7e-06 Score=55.72 Aligned_cols=56 Identities=16% Similarity=0.270 Sum_probs=46.5
Q ss_pred eEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccc
Q psy5757 32 KVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGM 94 (139)
Q Consensus 32 ~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~ 94 (139)
.++|+|||.|..+..+++.. +.++++++|.++.+.+.+++++.. +. .+++++...+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~-~~~~v~~~E~~~~~~~~l~~~~~~n~~------~~v~~~~~al 57 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKG-AEGRVIAFEPLPDAYEILEENVKLNNL------PNVVLLNAAV 57 (143)
T ss_pred CEEEccCCccHHHHHHHHhC-CCCEEEEEecCHHHHHHHHHHHHHcCC------CcEEEEEeee
Confidence 37999999999999999887 466899999999999999999877 33 4566666553
No 216
>KOG2361|consensus
Probab=98.30 E-value=4.3e-07 Score=65.09 Aligned_cols=100 Identities=14% Similarity=0.109 Sum_probs=68.7
Q ss_pred eEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccCCce
Q psy5757 32 KVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKFDRY 110 (139)
Q Consensus 32 ~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~ 110 (139)
+|||+|||.|.....+.+-.+ ++..++++|.+|.+++..+++.... ..++...+-|+.. +.+..+...+++
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~------e~~~~afv~Dlt~--~~~~~~~~~~sv 145 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYD------ESRVEAFVWDLTS--PSLKEPPEEGSV 145 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccc------hhhhcccceeccc--hhccCCCCcCcc
Confidence 799999999999999998763 2378999999999999999887661 1344444444332 222233345678
Q ss_pred eEEecCccccc-----cccceeeeeeeccCCCCC
Q psy5757 111 DFLPHAPAESW-----MNIPVCINYTATMPEGSY 139 (139)
Q Consensus 111 D~vi~~~~~~~-----~~~p~~~~~~~~~p~g~~ 139 (139)
|.+.+-.++.- +.......++.++|+|++
T Consensus 146 D~it~IFvLSAi~pek~~~a~~nl~~llKPGG~l 179 (264)
T KOG2361|consen 146 DIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSL 179 (264)
T ss_pred ceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEE
Confidence 88766555443 334456668888999863
No 217
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=98.30 E-value=7.6e-06 Score=60.90 Aligned_cols=101 Identities=17% Similarity=0.235 Sum_probs=51.5
Q ss_pred HHHHHHHhcccC---CCCCeEEEEcccCChh-HHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhh-ccccccCCcEEEE
Q psy5757 16 ILTYLSIIQPHL---NENSKVLEIGSGSGYL-TNMISELMNSTGQVIGIEHVPQLVNSSIQNILHS-NARLLTDGHIKFV 90 (139)
Q Consensus 16 ~~~~~~~l~~~~---~~~~~iLdiG~G~G~~-~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~-~~~~~~~~~i~~~ 90 (139)
+.++.+.+.... ...-++||||||.... .+-.++.. .-+++|.|+++..++.|+++...+ . + ..+|+++
T Consensus 86 i~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~--~W~fvaTdID~~sl~~A~~nv~~N~~---L-~~~I~l~ 159 (299)
T PF05971_consen 86 IHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLY--GWSFVATDIDPKSLESARENVERNPN---L-ESRIELR 159 (299)
T ss_dssp HHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHHT-T-----TTTEEEE
T ss_pred HHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhc--CCeEEEecCCHHHHHHHHHHHHhccc---c-ccceEEE
Confidence 444555554211 1245799999996643 33333333 239999999999999999999873 3 2 4678876
Q ss_pred Eccchh-hhHHHhhhccCCceeEEecCcccccccc
Q psy5757 91 ALGMIK-RIETVELMMKFDRYDFLPHAPAESWMNI 124 (139)
Q Consensus 91 ~~d~~~-~~~~~~~~~~~~~~D~vi~~~~~~~~~~ 124 (139)
...-.. .+..+ ..+.+.||+..|||+||--.+
T Consensus 160 ~~~~~~~i~~~i--~~~~e~~dftmCNPPFy~s~~ 192 (299)
T PF05971_consen 160 KQKNPDNIFDGI--IQPNERFDFTMCNPPFYSSQE 192 (299)
T ss_dssp E--ST-SSTTTS--TT--S-EEEEEE-----SS--
T ss_pred EcCCccccchhh--hcccceeeEEecCCccccChh
Confidence 543221 11211 123458999999999987554
No 218
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=98.27 E-value=2.9e-05 Score=57.57 Aligned_cols=93 Identities=16% Similarity=0.237 Sum_probs=72.3
Q ss_pred HHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccch
Q psy5757 16 ILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMI 95 (139)
Q Consensus 16 ~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~ 95 (139)
...+++.|. .+++...+|..-|.|+.+..+.+.+++.++++++|.++++++.|++.+... .++++++++++.
T Consensus 12 l~E~i~~L~--~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~------~~r~~~v~~~F~ 83 (314)
T COG0275 12 LNEVVELLA--PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEF------DGRVTLVHGNFA 83 (314)
T ss_pred HHHHHHhcc--cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhcc------CCcEEEEeCcHH
Confidence 456666665 477789999999999999999999987789999999999999999998772 268999999966
Q ss_pred hhhHHHhhhccCCceeEEecCc
Q psy5757 96 KRIETVELMMKFDRYDFLPHAP 117 (139)
Q Consensus 96 ~~~~~~~~~~~~~~~D~vi~~~ 117 (139)
+....+ .....+++|-|+...
T Consensus 84 ~l~~~l-~~~~i~~vDGiL~DL 104 (314)
T COG0275 84 NLAEAL-KELGIGKVDGILLDL 104 (314)
T ss_pred HHHHHH-HhcCCCceeEEEEec
Confidence 633322 222345677776554
No 219
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=98.24 E-value=4.3e-06 Score=55.74 Aligned_cols=49 Identities=29% Similarity=0.537 Sum_probs=42.0
Q ss_pred CCCCeEEEEcccCChhHHHHHHHc---CCCceEEEEeCCHHHHHHHHHHHHh
Q psy5757 28 NENSKVLEIGSGSGYLTNMISELM---NSTGQVIGIEHVPQLVNSSIQNILH 76 (139)
Q Consensus 28 ~~~~~iLdiG~G~G~~~~~l~~~~---~~~~~v~~~d~~~~~~~~a~~~~~~ 76 (139)
.+...|+|+|||.|+++..++..+ .+..+++++|.++..++.+.++.+.
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~ 75 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQK 75 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHH
Confidence 556799999999999999999933 2456999999999999999888876
No 220
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=98.23 E-value=7.8e-06 Score=61.12 Aligned_cols=106 Identities=13% Similarity=0.242 Sum_probs=71.4
Q ss_pred HHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccch
Q psy5757 16 ILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMI 95 (139)
Q Consensus 16 ~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~ 95 (139)
...+++.+. .+++..++|..-|.|+.+..+.+..++ ++++|+|.|+.+++.|++++.. . .+++.++++++.
T Consensus 9 l~Evl~~L~--~~~~g~~vD~T~G~GGHS~aiL~~~~~-~~li~~DrD~~a~~~a~~~l~~-----~-~~r~~~~~~~F~ 79 (310)
T PF01795_consen 9 LKEVLEALN--PKPGGIYVDCTFGGGGHSKAILEKLPN-GRLIGIDRDPEALERAKERLKK-----F-DDRFIFIHGNFS 79 (310)
T ss_dssp HHHHHHHHT----TT-EEEETT-TTSHHHHHHHHT-TT--EEEEEES-HHHHHHHHCCTCC-----C-CTTEEEEES-GG
T ss_pred HHHHHHhhC--cCCCceEEeecCCcHHHHHHHHHhCCC-CeEEEecCCHHHHHHHHHHHhh-----c-cceEEEEeccHH
Confidence 456677775 577889999999999999999999965 8999999999999999988765 1 368999999977
Q ss_pred hhhHHHhhhc-cCCceeEEecCcc--ccccccc-eeeeee
Q psy5757 96 KRIETVELMM-KFDRYDFLPHAPA--ESWMNIP-VCINYT 131 (139)
Q Consensus 96 ~~~~~~~~~~-~~~~~D~vi~~~~--~~~~~~p-~~~~~~ 131 (139)
+ +..+.... ...++|-|+...- .+.+.+| .|+.|.
T Consensus 80 ~-l~~~l~~~~~~~~~dgiL~DLGvSS~Qld~~~RGFSf~ 118 (310)
T PF01795_consen 80 N-LDEYLKELNGINKVDGILFDLGVSSMQLDDPERGFSFR 118 (310)
T ss_dssp G-HHHHHHHTTTTS-EEEEEEE-S--HHHHHTGGGSSSSS
T ss_pred H-HHHHHHHccCCCccCEEEEccccCHHHhCCCCCCCCCC
Confidence 7 44332333 4557898877653 3344444 455554
No 221
>PRK00536 speE spermidine synthase; Provisional
Probab=98.21 E-value=5.5e-06 Score=60.72 Aligned_cols=95 Identities=12% Similarity=0.073 Sum_probs=67.8
Q ss_pred CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757 28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMK 106 (139)
Q Consensus 28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 106 (139)
+..++||-+|.|-|+..+.+.+.-. +|+.+|+|+.+++.+++.+.. .. -+.+++++++.. +. ...
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~~---~v~mVeID~~Vv~~~k~~lP~~~~--~~~DpRv~l~~~-----~~----~~~ 136 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYDT---HVDFVQADEKILDSFISFFPHFHE--VKNNKNFTHAKQ-----LL----DLD 136 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcCC---eeEEEECCHHHHHHHHHHCHHHHH--hhcCCCEEEeeh-----hh----hcc
Confidence 5668999999999999999999853 999999999999999997765 21 255688888752 21 112
Q ss_pred CCceeEEecCccccccccceeeeeeeccCCCC
Q psy5757 107 FDRYDFLPHAPAESWMNIPVCINYTATMPEGS 138 (139)
Q Consensus 107 ~~~~D~vi~~~~~~~~~~p~~~~~~~~~p~g~ 138 (139)
.++||+||....+. .+......+.+.|+|.
T Consensus 137 ~~~fDVIIvDs~~~--~~fy~~~~~~L~~~Gi 166 (262)
T PRK00536 137 IKKYDLIICLQEPD--IHKIDGLKRMLKEDGV 166 (262)
T ss_pred CCcCCEEEEcCCCC--hHHHHHHHHhcCCCcE
Confidence 36799999996521 1112233556666653
No 222
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=98.13 E-value=1e-05 Score=64.23 Aligned_cols=107 Identities=12% Similarity=0.134 Sum_probs=78.6
Q ss_pred hcccccChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCC---CceEEEEeCCHHHHHHHHHHHHh-hcccc
Q psy5757 6 IGAAIGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNS---TGQVIGIEHVPQLVNSSIQNILH-SNARL 81 (139)
Q Consensus 6 ~~~~~~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~---~~~v~~~d~~~~~~~~a~~~~~~-~~~~~ 81 (139)
.|..+++.+++..+.+.+.+ .+..+|+|..||+|++.....+.... +...+|.|+++.....++.++-. +.
T Consensus 165 ~GEfyTP~~v~~liv~~l~~--~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi--- 239 (489)
T COG0286 165 AGEFYTPREVSELIVELLDP--EPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGI--- 239 (489)
T ss_pred CCccCChHHHHHHHHHHcCC--CCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCC---
Confidence 37888999988888888874 66679999999999988888887742 25789999999999999999877 54
Q ss_pred ccCCcEEEEEccchhhhHHHhhhccCCceeEEecCcccc
Q psy5757 82 LTDGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAES 120 (139)
Q Consensus 82 ~~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~ 120 (139)
..++...++|-..... ........+||.|++||++.
T Consensus 240 --~~~~~i~~~dtl~~~~-~~~~~~~~~~D~viaNPPf~ 275 (489)
T COG0286 240 --EGDANIRHGDTLSNPK-HDDKDDKGKFDFVIANPPFS 275 (489)
T ss_pred --CccccccccccccCCc-ccccCCccceeEEEeCCCCC
Confidence 1145566665432111 00011235699999999975
No 223
>KOG4589|consensus
Probab=98.08 E-value=6.8e-06 Score=57.06 Aligned_cols=76 Identities=14% Similarity=0.194 Sum_probs=56.2
Q ss_pred CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEc-cchhhh--HHHhh
Q psy5757 27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVAL-GMIKRI--ETVEL 103 (139)
Q Consensus 27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~-d~~~~~--~~~~~ 103 (139)
++++.+|||+||..|+++....++.+|.+.|+|+|+.+- .+.+.++++.+ |+.+.. ..+-+
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~----------------~p~~Ga~~i~~~dvtdp~~~~ki~e 130 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI----------------EPPEGATIIQGNDVTDPETYRKIFE 130 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec----------------cCCCCcccccccccCCHHHHHHHHH
Confidence 578899999999999999999999989999999998731 11255666666 666521 23334
Q ss_pred hccCCceeEEecCcc
Q psy5757 104 MMKFDRYDFLPHAPA 118 (139)
Q Consensus 104 ~~~~~~~D~vi~~~~ 118 (139)
..+...+|+|+|...
T Consensus 131 ~lp~r~VdvVlSDMa 145 (232)
T KOG4589|consen 131 ALPNRPVDVVLSDMA 145 (232)
T ss_pred hCCCCcccEEEeccC
Confidence 445667899888765
No 224
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.06 E-value=1.2e-05 Score=59.80 Aligned_cols=122 Identities=8% Similarity=0.113 Sum_probs=72.3
Q ss_pred ccChHHHHHHHHHhcccCCCCCeEEEEcccCCh----hHHHHHHHcC---CCceEEEEeCCHHHHHHHHHHHHh-h-cc-
Q psy5757 10 IGGISAILTYLSIIQPHLNENSKVLEIGSGSGY----LTNMISELMN---STGQVIGIEHVPQLVNSSIQNILH-S-NA- 79 (139)
Q Consensus 10 ~~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~----~~~~l~~~~~---~~~~v~~~d~~~~~~~~a~~~~~~-~-~~- 79 (139)
|-.+.....+.+.+... ...-+||..||+||. ++..+.+..+ .+.+++|.|+|+.+++.|++..-. . ++
T Consensus 97 FRd~~~f~~L~~~~~~~-~~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~ 175 (287)
T PRK10611 97 FREAHHFPILAEHARRR-SGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKT 175 (287)
T ss_pred cCCcHHHHHHHHHHHhc-CCCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhc
Confidence 33444444444444321 233699999999994 3333344321 135899999999999999877421 0 00
Q ss_pred -------cccc----------------CCcEEEEEccchhhhHHHhhhc-cCCceeEEecCccccccccc-----eeeee
Q psy5757 80 -------RLLT----------------DGHIKFVALGMIKRIETVELMM-KFDRYDFLPHAPAESWMNIP-----VCINY 130 (139)
Q Consensus 80 -------~~~~----------------~~~i~~~~~d~~~~~~~~~~~~-~~~~~D~vi~~~~~~~~~~p-----~~~~~ 130 (139)
+.+. -..++|...|..+ .+. ..+.||+|+|.+++.++..+ ....+
T Consensus 176 ~p~~~~~ryF~~~~~~~~~~~~v~~~lr~~V~F~~~NL~~------~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~ 249 (287)
T PRK10611 176 LSPQQLQRYFMRGTGPHEGLVRVRQELANYVDFQQLNLLA------KQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFV 249 (287)
T ss_pred CCHHHHHHHcccccCCCCceEEEChHHHccCEEEcccCCC------CCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHH
Confidence 0010 0234555555332 011 13679999999998887654 34558
Q ss_pred eeccCCCC
Q psy5757 131 TATMPEGS 138 (139)
Q Consensus 131 ~~~~p~g~ 138 (139)
+.++|+|-
T Consensus 250 ~~L~pgG~ 257 (287)
T PRK10611 250 PLLKPDGL 257 (287)
T ss_pred HHhCCCcE
Confidence 88899884
No 225
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.04 E-value=9.1e-06 Score=57.27 Aligned_cols=113 Identities=15% Similarity=0.088 Sum_probs=69.8
Q ss_pred HHHHHhcccCCCCC-eEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcE-EEEEccc
Q psy5757 18 TYLSIIQPHLNENS-KVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHI-KFVALGM 94 (139)
Q Consensus 18 ~~~~~l~~~~~~~~-~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i-~~~~~d~ 94 (139)
-+++.|.+.+++.. +|||||||||-.+..++..+ |..+-...|.+++.....+..... +. +|+ .-+..|+
T Consensus 13 pIl~vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~l-P~l~WqPSD~~~~~~~sI~a~~~~~~~------~Nv~~P~~lDv 85 (204)
T PF06080_consen 13 PILEVLKQYLPDSGTRVLEIASGTGQHAVYFAQAL-PHLTWQPSDPDDNLRPSIRAWIAEAGL------PNVRPPLALDV 85 (204)
T ss_pred HHHHHHHHHhCccCceEEEEcCCccHHHHHHHHHC-CCCEEcCCCCChHHHhhHHHHHHhcCC------cccCCCeEeec
Confidence 34555555455555 49999999999999999999 456777889998876555555444 32 232 1123444
Q ss_pred hhh-hHH-HhhhccCCceeEEecCccccccccce-----eeeeeeccCCC
Q psy5757 95 IKR-IET-VELMMKFDRYDFLPHAPAESWMNIPV-----CINYTATMPEG 137 (139)
Q Consensus 95 ~~~-~~~-~~~~~~~~~~D~vi~~~~~~~~~~p~-----~~~~~~~~p~g 137 (139)
.+. +.- .......+.||.|++.+.+|-++-.. ....+.++|+|
T Consensus 86 ~~~~w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG 135 (204)
T PF06080_consen 86 SAPPWPWELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGG 135 (204)
T ss_pred CCCCCccccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCC
Confidence 432 210 00011245799999999999877432 22244555555
No 226
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.04 E-value=1.3e-05 Score=56.43 Aligned_cols=122 Identities=14% Similarity=0.206 Sum_probs=64.2
Q ss_pred ccChHHHHHHHHHhcc-cC---C--CCCeEEEEcccCCh----hHHHHHHHc----CCCceEEEEeCCHHHHHHHHHHHH
Q psy5757 10 IGGISAILTYLSIIQP-HL---N--ENSKVLEIGSGSGY----LTNMISELM----NSTGQVIGIEHVPQLVNSSIQNIL 75 (139)
Q Consensus 10 ~~~~~~~~~~~~~l~~-~~---~--~~~~iLdiG~G~G~----~~~~l~~~~----~~~~~v~~~d~~~~~~~~a~~~~~ 75 (139)
|-.+.....+.+.+.+ .+ + +.-+||..||+||. ++..+.+.. +.+.+++|.|+|+.+++.|++-.-
T Consensus 6 FRd~~~f~~l~~~vlp~~~~~~~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y 85 (196)
T PF01739_consen 6 FRDPEQFEALRDEVLPPLLARARPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIY 85 (196)
T ss_dssp TTTTTHHHHHHHHHH-------CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEE
T ss_pred cCCHHHHHHHHHHHHHhhccccCCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCC
Confidence 3344445555555542 11 2 34589999999994 333344421 114589999999999999987642
Q ss_pred h--hcc--------ccc-c------------CCcEEEEEccchhhhHHHhhhccCCceeEEecCccccccccce-----e
Q psy5757 76 H--SNA--------RLL-T------------DGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAESWMNIPV-----C 127 (139)
Q Consensus 76 ~--~~~--------~~~-~------------~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~p~-----~ 127 (139)
. .++ ..+ . ..+++|...|..+ .....+.||+|+|.+++-++..+. .
T Consensus 86 ~~~~~~~~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~------~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~ 159 (196)
T PF01739_consen 86 PERSLRGLPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLD------PDPPFGRFDLIFCRNVLIYFDPETQQRVLR 159 (196)
T ss_dssp EGGGGTTS-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT-------S------EEEEEE-SSGGGS-HHHHHHHHH
T ss_pred CHHHHhhhHHHHHHHhccccCCCceeEChHHcCceEEEecccCC------CCcccCCccEEEecCEEEEeCHHHHHHHHH
Confidence 1 110 001 0 1466777777544 122456799999999988887653 3
Q ss_pred eeeeeccCCC
Q psy5757 128 INYTATMPEG 137 (139)
Q Consensus 128 ~~~~~~~p~g 137 (139)
..+..+.|+|
T Consensus 160 ~l~~~L~pgG 169 (196)
T PF01739_consen 160 RLHRSLKPGG 169 (196)
T ss_dssp HHGGGEEEEE
T ss_pred HHHHHcCCCC
Confidence 3366666665
No 227
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.00 E-value=8.5e-05 Score=55.99 Aligned_cols=76 Identities=12% Similarity=0.154 Sum_probs=57.0
Q ss_pred HHHhcccCCCCCeEEEEcccCChhHHHHHHHcCC---CceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEE--EEcc
Q psy5757 20 LSIIQPHLNENSKVLEIGSGSGYLTNMISELMNS---TGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKF--VALG 93 (139)
Q Consensus 20 ~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~---~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~--~~~d 93 (139)
...|...+.++..++|+|||+|.-+..|.+.+.. ..+.+++|+|.++++.+.+++.. .. +.+++ +++|
T Consensus 67 ~~~Ia~~i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~------p~l~v~~l~gd 140 (319)
T TIGR03439 67 SSDIAASIPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNF------SHVRCAGLLGT 140 (319)
T ss_pred HHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccC------CCeEEEEEEec
Confidence 3344444667779999999999998888887732 35789999999999999999883 22 55555 8899
Q ss_pred chhhhHHH
Q psy5757 94 MIKRIETV 101 (139)
Q Consensus 94 ~~~~~~~~ 101 (139)
+.+.+..+
T Consensus 141 y~~~l~~l 148 (319)
T TIGR03439 141 YDDGLAWL 148 (319)
T ss_pred HHHHHhhc
Confidence 87765433
No 228
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.96 E-value=4.2e-05 Score=54.45 Aligned_cols=76 Identities=17% Similarity=0.183 Sum_probs=60.3
Q ss_pred CCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccCCc
Q psy5757 30 NSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKFDR 109 (139)
Q Consensus 30 ~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~ 109 (139)
+.+++|||+|.|..+..++-.. |+.+++-+|....-+...+..... ++.+|++++++.+.+ +.. ..+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~-p~~~vtLles~~Kk~~FL~~~~~e-----L~L~nv~i~~~RaE~----~~~---~~~ 134 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAF-PDLKVTLLESLGKKIAFLREVKKE-----LGLENVEIVHGRAEE----FGQ---EKK 134 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhc-cCCcEEEEccCchHHHHHHHHHHH-----hCCCCeEEehhhHhh----ccc---ccc
Confidence 5899999999999999999665 567899999998888888888777 334899999998544 211 123
Q ss_pred -eeEEecCcc
Q psy5757 110 -YDFLPHAPA 118 (139)
Q Consensus 110 -~D~vi~~~~ 118 (139)
||+|.+...
T Consensus 135 ~~D~vtsRAv 144 (215)
T COG0357 135 QYDVVTSRAV 144 (215)
T ss_pred cCcEEEeehc
Confidence 999988875
No 229
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=97.96 E-value=3.6e-05 Score=54.68 Aligned_cols=85 Identities=15% Similarity=0.164 Sum_probs=54.5
Q ss_pred CCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccCC
Q psy5757 29 ENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKFD 108 (139)
Q Consensus 29 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~ 108 (139)
...+.||+|||-|..|..+....-. +|-.+|.++..++.|++.+.... ..-.++.+..+.+ +. .+..
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~--~VDlVEp~~~Fl~~a~~~l~~~~-----~~v~~~~~~gLQ~-f~-----P~~~ 121 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFD--EVDLVEPVEKFLEQAKEYLGKDN-----PRVGEFYCVGLQD-FT-----PEEG 121 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-S--EEEEEES-HHHHHHHHHHTCCGG-----CCEEEEEES-GGG----------TT
T ss_pred CcceEEecccccchhHHHHHHHhcC--EeEEeccCHHHHHHHHHHhcccC-----CCcceEEecCHhh-cc-----CCCC
Confidence 3468999999999999877554433 99999999999999998775511 1223555554333 22 1235
Q ss_pred ceeEEecCccccccccce
Q psy5757 109 RYDFLPHAPAESWMNIPV 126 (139)
Q Consensus 109 ~~D~vi~~~~~~~~~~p~ 126 (139)
+||+||+.+++.|+.|..
T Consensus 122 ~YDlIW~QW~lghLTD~d 139 (218)
T PF05891_consen 122 KYDLIWIQWCLGHLTDED 139 (218)
T ss_dssp -EEEEEEES-GGGS-HHH
T ss_pred cEeEEEehHhhccCCHHH
Confidence 899999999999988753
No 230
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=97.90 E-value=0.00021 Score=54.73 Aligned_cols=83 Identities=16% Similarity=0.236 Sum_probs=64.4
Q ss_pred CCCCCeEEEEcccCChhHHHHHHHcCCC-ceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhh
Q psy5757 27 LNENSKVLEIGSGSGYLTNMISELMNST-GQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELM 104 (139)
Q Consensus 27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~-~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 104 (139)
.+++.+|||.+++.|+-|..+++.+..+ ..|+++|.++.-++..++++++ +. .|+..+..|....... .
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~------~nv~~~~~d~~~~~~~---~ 224 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGV------RNVIVVNKDARRLAEL---L 224 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCC------CceEEEeccccccccc---c
Confidence 5889999999999999999999999653 4569999999999999999999 55 7777777775431111 1
Q ss_pred ccCCceeEEecCcc
Q psy5757 105 MKFDRYDFLPHAPA 118 (139)
Q Consensus 105 ~~~~~~D~vi~~~~ 118 (139)
...++||.|+..++
T Consensus 225 ~~~~~fD~iLlDaP 238 (355)
T COG0144 225 PGGEKFDRILLDAP 238 (355)
T ss_pred cccCcCcEEEECCC
Confidence 11225999987776
No 231
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.89 E-value=5.9e-05 Score=55.72 Aligned_cols=97 Identities=15% Similarity=0.193 Sum_probs=62.4
Q ss_pred HHHHHHHhcccC--CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEc
Q psy5757 16 ILTYLSIIQPHL--NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVAL 92 (139)
Q Consensus 16 ~~~~~~~l~~~~--~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~ 92 (139)
+.+++..+.... ....+|||+|||.|....++.+.++...+++++|.|+.+++.++..+.. .. .....+. .
T Consensus 18 ~~~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~-----~~~~~~~-~ 91 (274)
T PF09243_consen 18 VYRVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPN-----NRNAEWR-R 91 (274)
T ss_pred HHHHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccc-----cccchhh-h
Confidence 445555554322 3457999999999988877777765445899999999999999887765 11 0111111 1
Q ss_pred cchhhhHHHhhhccCCceeEEecCcccccccc
Q psy5757 93 GMIKRIETVELMMKFDRYDFLPHAPAESWMNI 124 (139)
Q Consensus 93 d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~ 124 (139)
+. .. ...+....|+|++..++..+.+
T Consensus 92 ~~---~~---~~~~~~~~DLvi~s~~L~EL~~ 117 (274)
T PF09243_consen 92 VL---YR---DFLPFPPDDLVIASYVLNELPS 117 (274)
T ss_pred hh---hc---ccccCCCCcEEEEehhhhcCCc
Confidence 10 00 1112334599999999888776
No 232
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.86 E-value=0.0003 Score=50.26 Aligned_cols=83 Identities=19% Similarity=0.269 Sum_probs=60.0
Q ss_pred cCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757 26 HLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMM 105 (139)
Q Consensus 26 ~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 105 (139)
.++++.+||-+|+.+|.+...++.-.++++.|+++|.++...+..-...++ -.|+--+..|+.. .+.+..-
T Consensus 70 ~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~-------R~NIiPIl~DAr~-P~~Y~~l- 140 (229)
T PF01269_consen 70 PIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK-------RPNIIPILEDARH-PEKYRML- 140 (229)
T ss_dssp S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH-------STTEEEEES-TTS-GGGGTTT-
T ss_pred CCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc-------CCceeeeeccCCC-hHHhhcc-
Confidence 468899999999999999999999998899999999999777766655544 2788888899875 3333211
Q ss_pred cCCceeEEecCcc
Q psy5757 106 KFDRYDFLPHAPA 118 (139)
Q Consensus 106 ~~~~~D~vi~~~~ 118 (139)
.+.+|++++.-+
T Consensus 141 -v~~VDvI~~DVa 152 (229)
T PF01269_consen 141 -VEMVDVIFQDVA 152 (229)
T ss_dssp -S--EEEEEEE-S
T ss_pred -cccccEEEecCC
Confidence 347899987754
No 233
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.72 E-value=3.8e-05 Score=53.04 Aligned_cols=75 Identities=15% Similarity=0.317 Sum_probs=48.2
Q ss_pred CCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhhhc-
Q psy5757 29 ENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVELMM- 105 (139)
Q Consensus 29 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~~- 105 (139)
++.++||+||++|+++..+.++..+.++++|+|+.+. .. .+++..+.+|+.+. ...+....
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~---------~~-------~~~~~~i~~d~~~~~~~~~i~~~~~ 86 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM---------DP-------LQNVSFIQGDITNPENIKDIRKLLP 86 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST---------GS--------TTEEBTTGGGEEEEHSHHGGGSHG
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc---------cc-------ccceeeeecccchhhHHHhhhhhcc
Confidence 3489999999999999999999855679999999864 11 14566666666541 11221111
Q ss_pred -cCCceeEEecCccc
Q psy5757 106 -KFDRYDFLPHAPAE 119 (139)
Q Consensus 106 -~~~~~D~vi~~~~~ 119 (139)
....+|+|++..+.
T Consensus 87 ~~~~~~dlv~~D~~~ 101 (181)
T PF01728_consen 87 ESGEKFDLVLSDMAP 101 (181)
T ss_dssp TTTCSESEEEE----
T ss_pred ccccCcceecccccc
Confidence 12579999999853
No 234
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=97.71 E-value=0.00016 Score=52.15 Aligned_cols=83 Identities=16% Similarity=0.212 Sum_probs=50.1
Q ss_pred CeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccc---cCCcEEEEEccchhhhHHHhhhcc
Q psy5757 31 SKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLL---TDGHIKFVALGMIKRIETVELMMK 106 (139)
Q Consensus 31 ~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~---~~~~i~~~~~d~~~~~~~~~~~~~ 106 (139)
.+|||..+|.|..+..++..+ . +|+++|-||.+....+.-+++ ...... ...+++++++|..+.+. .+
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G-~--~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~-----~~ 148 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLG-C--KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLR-----QP 148 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT-----EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCC-----CH
T ss_pred CEEEECCCcchHHHHHHHccC-C--eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHh-----hc
Confidence 389999999999999999754 3 899999999887777666554 110001 12589999999877544 34
Q ss_pred CCceeEEecCccccc
Q psy5757 107 FDRYDFLPHAPAESW 121 (139)
Q Consensus 107 ~~~~D~vi~~~~~~~ 121 (139)
..++|+|+..|=|..
T Consensus 149 ~~s~DVVY~DPMFp~ 163 (234)
T PF04445_consen 149 DNSFDVVYFDPMFPE 163 (234)
T ss_dssp SS--SEEEE--S---
T ss_pred CCCCCEEEECCCCCC
Confidence 578999999987654
No 235
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.69 E-value=6.8e-05 Score=47.24 Aligned_cols=75 Identities=17% Similarity=0.258 Sum_probs=26.5
Q ss_pred EEEcccCChhHHHHHHHcCCCc--eEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhccCCce
Q psy5757 34 LEIGSGSGYLTNMISELMNSTG--QVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMKFDRY 110 (139)
Q Consensus 34 LdiG~G~G~~~~~l~~~~~~~~--~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~ 110 (139)
||+|+..|..+..+++..++.. +++++|..+. .+.+++.++. +. ..+++++.++..+.++.+. .+++
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~-----~~~~~~~~g~s~~~l~~~~----~~~~ 70 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGL-----SDRVEFIQGDSPDFLPSLP----DGPI 70 (106)
T ss_dssp --------------------------EEEESS-------------GGG------BTEEEEES-THHHHHHHH----H--E
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCC-----CCeEEEEEcCcHHHHHHcC----CCCE
Confidence 6999999999999998876543 7999999985 3334444443 33 3679999999877555442 4579
Q ss_pred eEEecCcc
Q psy5757 111 DFLPHAPA 118 (139)
Q Consensus 111 D~vi~~~~ 118 (139)
|+++....
T Consensus 71 dli~iDg~ 78 (106)
T PF13578_consen 71 DLIFIDGD 78 (106)
T ss_dssp EEEEEES-
T ss_pred EEEEECCC
Confidence 99988874
No 236
>PRK11524 putative methyltransferase; Provisional
Probab=97.68 E-value=0.00027 Score=52.44 Aligned_cols=46 Identities=20% Similarity=0.161 Sum_probs=41.6
Q ss_pred CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh
Q psy5757 28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH 76 (139)
Q Consensus 28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~ 76 (139)
.+|..|||..+|||.++.+..+... +.+|+|++++.++.|++++..
T Consensus 207 ~~GD~VLDPF~GSGTT~~AA~~lgR---~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 207 NPGDIVLDPFAGSFTTGAVAKASGR---KFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred CCCCEEEECCCCCcHHHHHHHHcCC---CEEEEeCCHHHHHHHHHHHHh
Confidence 7899999999999999888877765 999999999999999999864
No 237
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.68 E-value=0.00014 Score=55.10 Aligned_cols=71 Identities=14% Similarity=0.216 Sum_probs=51.1
Q ss_pred CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757 27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMK 106 (139)
Q Consensus 27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 106 (139)
+.+++++||+||++|+++..++++.. +|+++|..+ +- .. +.. .++++....|.....+ +
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~rG~---~V~AVD~g~-l~---~~-L~~-------~~~V~h~~~d~fr~~p------~ 267 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRRGM---FVTAVDNGP-MA---QS-LMD-------TGQVEHLRADGFKFRP------P 267 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHcCC---EEEEEechh-cC---Hh-hhC-------CCCEEEEeccCcccCC------C
Confidence 36889999999999999999999875 999999653 11 11 111 3778888887544211 1
Q ss_pred CCceeEEecCcc
Q psy5757 107 FDRYDFLPHAPA 118 (139)
Q Consensus 107 ~~~~D~vi~~~~ 118 (139)
...+|+++|..+
T Consensus 268 ~~~vDwvVcDmv 279 (357)
T PRK11760 268 RKNVDWLVCDMV 279 (357)
T ss_pred CCCCCEEEEecc
Confidence 456899988876
No 238
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=97.66 E-value=1.9e-05 Score=55.85 Aligned_cols=91 Identities=11% Similarity=0.107 Sum_probs=48.9
Q ss_pred HHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccch
Q psy5757 16 ILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMI 95 (139)
Q Consensus 16 ~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~ 95 (139)
+..+++++.. .++...|.|+|||.+.++..+.... +|..+|... .|-.++..|+.
T Consensus 60 vd~iI~~l~~-~~~~~viaD~GCGdA~la~~~~~~~----~V~SfDLva--------------------~n~~Vtacdia 114 (219)
T PF05148_consen 60 VDVIIEWLKK-RPKSLVIADFGCGDAKLAKAVPNKH----KVHSFDLVA--------------------PNPRVTACDIA 114 (219)
T ss_dssp HHHHHHHHCT-S-TTS-EEEES-TT-HHHHH--S-------EEEEESS---------------------SSTTEEES-TT
T ss_pred HHHHHHHHHh-cCCCEEEEECCCchHHHHHhcccCc----eEEEeeccC--------------------CCCCEEEecCc
Confidence 5678888873 4556799999999999886554322 699999874 23335667853
Q ss_pred hhhHHHhhhccCCceeEEecCcccccc--ccceeeeeeeccCCC
Q psy5757 96 KRIETVELMMKFDRYDFLPHAPAESWM--NIPVCINYTATMPEG 137 (139)
Q Consensus 96 ~~~~~~~~~~~~~~~D~vi~~~~~~~~--~~p~~~~~~~~~p~g 137 (139)
+ ++ .+.+++|++++..++.=- .+.+...++.++|+|
T Consensus 115 ~----vP--L~~~svDv~VfcLSLMGTn~~~fi~EA~RvLK~~G 152 (219)
T PF05148_consen 115 N----VP--LEDESVDVAVFCLSLMGTNWPDFIREANRVLKPGG 152 (219)
T ss_dssp S-----S----TT-EEEEEEES---SS-HHHHHHHHHHHEEEEE
T ss_pred c----Cc--CCCCceeEEEEEhhhhCCCcHHHHHHHHheeccCc
Confidence 3 32 346789999999885422 233333455555555
No 239
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=97.65 E-value=0.00035 Score=50.70 Aligned_cols=92 Identities=13% Similarity=0.009 Sum_probs=60.1
Q ss_pred HHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccch
Q psy5757 17 LTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMI 95 (139)
Q Consensus 17 ~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~ 95 (139)
..+.+.+........+|+|||||.--++....... +.+.++|+||+..+++.....+.. + .+.++.+.|..
T Consensus 93 d~fY~~if~~~~~p~sVlDigCGlNPlalp~~~~~-~~a~Y~a~DID~~~ve~l~~~l~~l~-------~~~~~~v~Dl~ 164 (251)
T PF07091_consen 93 DEFYDEIFGRIPPPDSVLDIGCGLNPLALPWMPEA-PGATYIAYDIDSQLVEFLNAFLAVLG-------VPHDARVRDLL 164 (251)
T ss_dssp HHHHHHHCCCS---SEEEEET-TTCHHHHHTTTSS-TT-EEEEEESBHHHHHHHHHHHHHTT--------CEEEEEE-TT
T ss_pred HHHHHHHHhcCCCCchhhhhhccCCceehhhcccC-CCcEEEEEeCCHHHHHHHHHHHHhhC-------CCcceeEeeee
Confidence 34444444445667899999999999988887655 567999999999999999888776 3 35666666754
Q ss_pred hhhHHHhhhccCCceeEEecCccccccc
Q psy5757 96 KRIETVELMMKFDRYDFLPHAPAESWMN 123 (139)
Q Consensus 96 ~~~~~~~~~~~~~~~D~vi~~~~~~~~~ 123 (139)
... +.+..|+...--.+|.+.
T Consensus 165 ~~~-------~~~~~DlaLllK~lp~le 185 (251)
T PF07091_consen 165 SDP-------PKEPADLALLLKTLPCLE 185 (251)
T ss_dssp TSH-------TTSEESEEEEET-HHHHH
T ss_pred ccC-------CCCCcchhhHHHHHHHHH
Confidence 321 345678887766655443
No 240
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.64 E-value=0.00027 Score=52.21 Aligned_cols=80 Identities=16% Similarity=0.209 Sum_probs=46.9
Q ss_pred CCeEEEEccc-CChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHH-h-hccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757 30 NSKVLEIGSG-SGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNIL-H-SNARLLTDGHIKFVALGMIKRIETVELMMK 106 (139)
Q Consensus 30 ~~~iLdiG~G-~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~-~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 106 (139)
..+|+=|||| .--.+..+++...+.+.++++|+++++++.+++... . ++ ..++.++.+|..+... .
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L-----~~~m~f~~~d~~~~~~------d 189 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGL-----SKRMSFITADVLDVTY------D 189 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH------SSEEEEES-GGGG-G------G
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccc-----cCCeEEEecchhcccc------c
Confidence 3599999999 455666666665556789999999999999999887 3 55 5789999999654211 2
Q ss_pred CCceeEEecCcccc
Q psy5757 107 FDRYDFLPHAPAES 120 (139)
Q Consensus 107 ~~~~D~vi~~~~~~ 120 (139)
...||+|+....-.
T Consensus 190 l~~~DvV~lAalVg 203 (276)
T PF03059_consen 190 LKEYDVVFLAALVG 203 (276)
T ss_dssp ----SEEEE-TT-S
T ss_pred cccCCEEEEhhhcc
Confidence 34689987776533
No 241
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.64 E-value=0.0002 Score=52.69 Aligned_cols=102 Identities=10% Similarity=0.159 Sum_probs=64.8
Q ss_pred CCeEEEEcccCC----hhHHHHHHHcC----CCceEEEEeCCHHHHHHHHHHHHh------hc-----cccc---cC---
Q psy5757 30 NSKVLEIGSGSG----YLTNMISELMN----STGQVIGIEHVPQLVNSSIQNILH------SN-----ARLL---TD--- 84 (139)
Q Consensus 30 ~~~iLdiG~G~G----~~~~~l~~~~~----~~~~v~~~d~~~~~~~~a~~~~~~------~~-----~~~~---~~--- 84 (139)
.-+||..||+|| +.+..+.+.++ ...+++|.|+|..+++.|+.-.-. ++ +..+ ..
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 458999999999 35555556553 256999999999999998754311 00 0000 00
Q ss_pred -------CcEEEEEccchhhhHHHhhhc-cCCceeEEecCccccccccce-----eeeeeeccCCCC
Q psy5757 85 -------GHIKFVALGMIKRIETVELMM-KFDRYDFLPHAPAESWMNIPV-----CINYTATMPEGS 138 (139)
Q Consensus 85 -------~~i~~~~~d~~~~~~~~~~~~-~~~~~D~vi~~~~~~~~~~p~-----~~~~~~~~p~g~ 138 (139)
..|.|...|..+ .. ..+.||+|+|.+++-.+..+. ...+..+.|+|.
T Consensus 177 ~v~~~ir~~V~F~~~NLl~-------~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~ 236 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLD-------DSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGL 236 (268)
T ss_pred EEChHHhcccEEeecCCCC-------CccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCE
Confidence 223333333322 22 235699999999988888764 344677777774
No 242
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=97.62 E-value=0.0003 Score=49.67 Aligned_cols=53 Identities=25% Similarity=0.214 Sum_probs=40.1
Q ss_pred HHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHH
Q psy5757 14 SAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQ 72 (139)
Q Consensus 14 ~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~ 72 (139)
..+.+++.... .++..|||.-||+|.++.+..+... +.+|+|++++.++.|++
T Consensus 179 ~l~~~lI~~~t---~~gdiVlDpF~GSGTT~~aa~~l~R---~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 179 ELIERLIKAST---NPGDIVLDPFAGSGTTAVAAEELGR---RYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp HHHHHHHHHHS----TT-EEEETT-TTTHHHHHHHHTT----EEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHhhh---ccceeeehhhhccChHHHHHHHcCC---eEEEEeCCHHHHHHhcC
Confidence 34555555544 7889999999999999998888775 89999999999998864
No 243
>KOG3115|consensus
Probab=97.46 E-value=0.00028 Score=49.77 Aligned_cols=72 Identities=14% Similarity=0.151 Sum_probs=54.2
Q ss_pred CCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hcc-ccccCCcEEEEEccchhhhHHHh
Q psy5757 30 NSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNA-RLLTDGHIKFVALGMIKRIETVE 102 (139)
Q Consensus 30 ~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~-~~~~~~~i~~~~~d~~~~~~~~~ 102 (139)
.-.+.|||||-|++...|+..+ |+.-++|.||--...+..+++++. ... +-=...|+.+...+....++++.
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~f-PdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f 134 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKF-PDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFF 134 (249)
T ss_pred cceEEeeccCccchhhhccccC-ccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchh
Confidence 3568999999999999999999 578999999998888888887765 210 00014678888888777666653
No 244
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.45 E-value=0.0018 Score=48.12 Aligned_cols=100 Identities=13% Similarity=0.040 Sum_probs=72.2
Q ss_pred CCCeEEEEcccCChhHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHHh-hccccccCCcE-EEEEccchhhhHHHhhhc
Q psy5757 29 ENSKVLEIGSGSGYLTNMISELMNS-TGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHI-KFVALGMIKRIETVELMM 105 (139)
Q Consensus 29 ~~~~iLdiG~G~G~~~~~l~~~~~~-~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i-~~~~~d~~~~~~~~~~~~ 105 (139)
..-+||||.||.|.......+..+. ..++.-.|.++..++..++.++. ++ .++ +|.++|+.+ ..++..-
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL------~~i~~f~~~dAfd-~~~l~~l- 206 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGL------EDIARFEQGDAFD-RDSLAAL- 206 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCC------ccceEEEecCCCC-HhHhhcc-
Confidence 3458999999999888888777743 35899999999999999999988 76 555 999999887 3322111
Q ss_pred cCCceeEEecCccccccccce------eeeeeeccCCC
Q psy5757 106 KFDRYDFLPHAPAESWMNIPV------CINYTATMPEG 137 (139)
Q Consensus 106 ~~~~~D~vi~~~~~~~~~~p~------~~~~~~~~p~g 137 (139)
.-+.++++....+..+.|-. .-.+..+.|+|
T Consensus 207 -~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG 243 (311)
T PF12147_consen 207 -DPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGG 243 (311)
T ss_pred -CCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCc
Confidence 12468888888777766632 22255566665
No 245
>PRK13699 putative methylase; Provisional
Probab=97.43 E-value=0.0011 Score=47.63 Aligned_cols=46 Identities=26% Similarity=0.231 Sum_probs=41.5
Q ss_pred CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh
Q psy5757 28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH 76 (139)
Q Consensus 28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~ 76 (139)
.++..|||.-||+|..+.+..+... +.+|+|++++..+.+.+++..
T Consensus 162 ~~g~~vlDpf~Gsgtt~~aa~~~~r---~~~g~e~~~~y~~~~~~r~~~ 207 (227)
T PRK13699 162 HPNAIVLDPFAGSGSTCVAALQSGR---RYIGIELLEQYHRAGQQRLAA 207 (227)
T ss_pred CCCCEEEeCCCCCCHHHHHHHHcCC---CEEEEecCHHHHHHHHHHHHH
Confidence 6888999999999999988887765 899999999999999998876
No 246
>KOG1709|consensus
Probab=97.37 E-value=0.00086 Score=47.81 Aligned_cols=109 Identities=16% Similarity=0.117 Sum_probs=73.1
Q ss_pred HHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccch
Q psy5757 16 ILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMI 95 (139)
Q Consensus 16 ~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~ 95 (139)
++...+.+. .+|.+||++|-|-|.....+.+.-+. +-+-||.+|..++..++.-... .+|+.+..+-
T Consensus 91 Mha~A~ai~---tkggrvLnVGFGMgIidT~iQe~~p~--~H~IiE~hp~V~krmr~~gw~e------k~nViil~g~-- 157 (271)
T KOG1709|consen 91 MHALAEAIS---TKGGRVLNVGFGMGIIDTFIQEAPPD--EHWIIEAHPDVLKRMRDWGWRE------KENVIILEGR-- 157 (271)
T ss_pred HHHHHHHHh---hCCceEEEeccchHHHHHHHhhcCCc--ceEEEecCHHHHHHHHhccccc------ccceEEEecc--
Confidence 444445553 67899999999999998888887643 6778999999999888776551 2677777775
Q ss_pred hhhHHHhhhccCCceeEEecCcc---ccccccceeeeeeeccCCCCC
Q psy5757 96 KRIETVELMMKFDRYDFLPHAPA---ESWMNIPVCINYTATMPEGSY 139 (139)
Q Consensus 96 ~~~~~~~~~~~~~~~D~vi~~~~---~~~~~~p~~~~~~~~~p~g~~ 139 (139)
|++.....+++.||=|+..-- ..-+.+.-.-..+.++|+|.|
T Consensus 158 --WeDvl~~L~d~~FDGI~yDTy~e~yEdl~~~hqh~~rLLkP~gv~ 202 (271)
T KOG1709|consen 158 --WEDVLNTLPDKHFDGIYYDTYSELYEDLRHFHQHVVRLLKPEGVF 202 (271)
T ss_pred --hHhhhccccccCcceeEeechhhHHHHHHHHHHHHhhhcCCCceE
Confidence 554433445666888866543 111112222456778888864
No 247
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.36 E-value=0.00034 Score=49.00 Aligned_cols=74 Identities=20% Similarity=0.258 Sum_probs=55.9
Q ss_pred CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccC
Q psy5757 28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKF 107 (139)
Q Consensus 28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 107 (139)
-.+++|||+|+|+|-.+...++.... .++..|++|......+-|.+.+- -.+.+...|.. .+.
T Consensus 78 VrgkrVLd~gagsgLvaIAaa~aGA~--~v~a~d~~P~~~~ai~lNa~ang------v~i~~~~~d~~---------g~~ 140 (218)
T COG3897 78 VRGKRVLDLGAGSGLVAIAAARAGAA--EVVAADIDPWLEQAIRLNAAANG------VSILFTHADLI---------GSP 140 (218)
T ss_pred cccceeeecccccChHHHHHHHhhhH--HHHhcCCChHHHHHhhcchhhcc------ceeEEeecccc---------CCC
Confidence 36789999999999999999998854 89999999988888888877621 46677776632 134
Q ss_pred CceeEEecCcc
Q psy5757 108 DRYDFLPHAPA 118 (139)
Q Consensus 108 ~~~D~vi~~~~ 118 (139)
..+|+++..-.
T Consensus 141 ~~~Dl~LagDl 151 (218)
T COG3897 141 PAFDLLLAGDL 151 (218)
T ss_pred cceeEEEeece
Confidence 56888855443
No 248
>KOG3045|consensus
Probab=97.31 E-value=0.00015 Score=52.90 Aligned_cols=90 Identities=13% Similarity=0.093 Sum_probs=63.0
Q ss_pred HHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccch
Q psy5757 16 ILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMI 95 (139)
Q Consensus 16 ~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~ 95 (139)
+..+++.|.. ......|.|+|||-+.++. .. .-+|+.+|+.+ .+-+++..|+.
T Consensus 168 ld~ii~~ik~-r~~~~vIaD~GCGEakiA~----~~--~~kV~SfDL~a--------------------~~~~V~~cDm~ 220 (325)
T KOG3045|consen 168 LDVIIRKIKR-RPKNIVIADFGCGEAKIAS----SE--RHKVHSFDLVA--------------------VNERVIACDMR 220 (325)
T ss_pred HHHHHHHHHh-CcCceEEEecccchhhhhh----cc--ccceeeeeeec--------------------CCCceeecccc
Confidence 4556666652 3556789999999998665 22 22899999874 45567778855
Q ss_pred hhhHHHhhhccCCceeEEecCcccc--ccccceeeeeeeccCCCC
Q psy5757 96 KRIETVELMMKFDRYDFLPHAPAES--WMNIPVCINYTATMPEGS 138 (139)
Q Consensus 96 ~~~~~~~~~~~~~~~D~vi~~~~~~--~~~~p~~~~~~~~~p~g~ 138 (139)
+ + +.+++++|++++..++. -+.++....|+.++|+|.
T Consensus 221 ~----v--Pl~d~svDvaV~CLSLMgtn~~df~kEa~RiLk~gG~ 259 (325)
T KOG3045|consen 221 N----V--PLEDESVDVAVFCLSLMGTNLADFIKEANRILKPGGL 259 (325)
T ss_pred C----C--cCccCcccEEEeeHhhhcccHHHHHHHHHHHhccCce
Confidence 4 2 34577899999988754 345667777888888885
No 249
>KOG3178|consensus
Probab=97.25 E-value=0.00033 Score=52.91 Aligned_cols=87 Identities=15% Similarity=0.147 Sum_probs=65.5
Q ss_pred CCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccCCc
Q psy5757 30 NSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKFDR 109 (139)
Q Consensus 30 ~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~ 109 (139)
-...+|+|.|.|..+..+...++ ++-+++.+...+..++..++ +.++.+-+|+.+..+ +
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp---~ik~infdlp~v~~~a~~~~---------~gV~~v~gdmfq~~P---------~ 236 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYP---HIKGINFDLPFVLAAAPYLA---------PGVEHVAGDMFQDTP---------K 236 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCC---CCceeecCHHHHHhhhhhhc---------CCcceecccccccCC---------C
Confidence 36789999999999999999775 89999999888777766642 347778888755322 2
Q ss_pred eeEEecCccccccccceeee-----eeeccCCC
Q psy5757 110 YDFLPHAPAESWMNIPVCIN-----YTATMPEG 137 (139)
Q Consensus 110 ~D~vi~~~~~~~~~~p~~~~-----~~~~~p~g 137 (139)
-|+||.-+++|++.|-.+.. +..++|+|
T Consensus 237 ~daI~mkWiLhdwtDedcvkiLknC~~sL~~~G 269 (342)
T KOG3178|consen 237 GDAIWMKWILHDWTDEDCVKILKNCKKSLPPGG 269 (342)
T ss_pred cCeEEEEeecccCChHHHHHHHHHHHHhCCCCC
Confidence 47999999999998864433 55555555
No 250
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.23 E-value=0.0013 Score=47.39 Aligned_cols=41 Identities=20% Similarity=0.237 Sum_probs=34.7
Q ss_pred CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHH
Q psy5757 28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSS 70 (139)
Q Consensus 28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a 70 (139)
.+++.+||+|+.||+++..+.++... +|+++|.....+.+-
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~gAk--~VyavDVG~~Ql~~k 118 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQRGAK--HVYAVDVGYGQLHWK 118 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHcCCc--EEEEEEccCCccCHh
Confidence 57899999999999999999999754 999999886555443
No 251
>KOG3987|consensus
Probab=97.20 E-value=4.3e-05 Score=54.05 Aligned_cols=67 Identities=19% Similarity=0.207 Sum_probs=48.2
Q ss_pred hhhcc-cccChHHHHHHHHHhcc-cCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHH
Q psy5757 4 VKIGA-AIGGISAILTYLSIIQP-HLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQN 73 (139)
Q Consensus 4 ~~~~~-~~~~~~~~~~~~~~l~~-~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~ 73 (139)
++.|+ ++-++....+++..=.+ .-....++||+|+|.|..+..++..+. +|++.|.|..|....++.
T Consensus 85 lgrGsMFifSe~QF~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~fe---evyATElS~tMr~rL~kk 153 (288)
T KOG3987|consen 85 LGRGSMFIFSEEQFRKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPTFE---EVYATELSWTMRDRLKKK 153 (288)
T ss_pred cccCceEEecHHHHHHHHhcCCCccCCCCeeEEeccCCCcchhhhhcchHH---HHHHHHhhHHHHHHHhhc
Confidence 45555 33455544444433321 234567999999999999999999987 899999999998887664
No 252
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.18 E-value=0.0036 Score=48.03 Aligned_cols=85 Identities=14% Similarity=0.219 Sum_probs=63.2
Q ss_pred CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hc-cccccCCcEEEEEccchhhhHHHhhh
Q psy5757 27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SN-ARLLTDGHIKFVALGMIKRIETVELM 104 (139)
Q Consensus 27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~-~~~~~~~~i~~~~~d~~~~~~~~~~~ 104 (139)
++..+++|-+|.|.|--.+.+.+..+ -.+++.+|.+|.+++.++++.-. .. --.+.+++++++..|+.++...
T Consensus 287 ~~~a~~vLvlGGGDGLAlRellkyP~-~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~---- 361 (508)
T COG4262 287 VRGARSVLVLGGGDGLALRELLKYPQ-VEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRT---- 361 (508)
T ss_pred ccccceEEEEcCCchHHHHHHHhCCC-cceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHh----
Confidence 35667999999999999999988653 34999999999999999854322 11 0114468899999998885542
Q ss_pred ccCCceeEEecCc
Q psy5757 105 MKFDRYDFLPHAP 117 (139)
Q Consensus 105 ~~~~~~D~vi~~~ 117 (139)
..+.||++|...
T Consensus 362 -a~~~fD~vIVDl 373 (508)
T COG4262 362 -AADMFDVVIVDL 373 (508)
T ss_pred -hcccccEEEEeC
Confidence 234799998765
No 253
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=97.16 E-value=0.002 Score=42.92 Aligned_cols=53 Identities=6% Similarity=0.070 Sum_probs=37.6
Q ss_pred eEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhccCCceeEEecCc
Q psy5757 56 QVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMKFDRYDFLPHAP 117 (139)
Q Consensus 56 ~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~ 117 (139)
+|+++||++++++.++++++. +. ..++++++.+ .+++....+.+++|+++.|.
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~-----~~~v~li~~s----He~l~~~i~~~~v~~~iFNL 54 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGL-----EDRVTLILDS----HENLDEYIPEGPVDAAIFNL 54 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT------GSGEEEEES-----GGGGGGT--S--EEEEEEEE
T ss_pred CEEEEECHHHHHHHHHHHHHhcCC-----CCcEEEEECC----HHHHHhhCccCCcCEEEEEC
Confidence 689999999999999999998 55 3689999887 44444333335799999887
No 254
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=97.14 E-value=0.00028 Score=50.15 Aligned_cols=81 Identities=16% Similarity=0.185 Sum_probs=54.8
Q ss_pred CeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccCCce
Q psy5757 31 SKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKFDRY 110 (139)
Q Consensus 31 ~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~ 110 (139)
.++||+||=+......-...+ .|+.||+++ ..-.+...|+.+. + ++ ..+.++|
T Consensus 53 lrlLEVGals~~N~~s~~~~f----dvt~IDLns--------------------~~~~I~qqDFm~r-p-lp-~~~~e~F 105 (219)
T PF11968_consen 53 LRLLEVGALSTDNACSTSGWF----DVTRIDLNS--------------------QHPGILQQDFMER-P-LP-KNESEKF 105 (219)
T ss_pred ceEEeecccCCCCcccccCce----eeEEeecCC--------------------CCCCceeeccccC-C-CC-CCcccce
Confidence 589999998776555544444 699999985 3334566665441 1 11 1235689
Q ss_pred eEEecCccccccccceeee------eeeccCCCC
Q psy5757 111 DFLPHAPAESWMNIPVCIN------YTATMPEGS 138 (139)
Q Consensus 111 D~vi~~~~~~~~~~p~~~~------~~~~~p~g~ 138 (139)
|+|.+..++.++++|..+. +..++|+|.
T Consensus 106 dvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~ 139 (219)
T PF11968_consen 106 DVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGL 139 (219)
T ss_pred eEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCc
Confidence 9999999999999996443 566666664
No 255
>KOG1501|consensus
Probab=97.10 E-value=0.0013 Score=51.49 Aligned_cols=52 Identities=23% Similarity=0.328 Sum_probs=45.2
Q ss_pred eEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEE
Q psy5757 32 KVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFV 90 (139)
Q Consensus 32 ~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~ 90 (139)
.+||||+|||-++.+.++.+.. .++++|.=..|.+.|++...+ +. .++++++
T Consensus 69 ~vLdigtGTGLLSmMAvragaD--~vtA~EvfkPM~d~arkI~~kng~-----SdkI~vI 121 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGAD--SVTACEVFKPMVDLARKIMHKNGM-----SDKINVI 121 (636)
T ss_pred EEEEccCCccHHHHHHHHhcCC--eEEeehhhchHHHHHHHHHhcCCC-----ccceeee
Confidence 6899999999999999999865 799999999999999999887 65 4666655
No 256
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.08 E-value=0.0021 Score=41.29 Aligned_cols=95 Identities=18% Similarity=0.292 Sum_probs=53.9
Q ss_pred EEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccC-Ccee
Q psy5757 33 VLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKF-DRYD 111 (139)
Q Consensus 33 iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~-~~~D 111 (139)
++|+|||+|..+ .+.........++++|.++.++..++..... . ....+.+...|.... .+ .... ..+|
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~--~~--~~~~~~~~d 121 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-A----GLGLVDFVVADALGG--VL--PFEDSASFD 121 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-c----CCCceEEEEeccccC--CC--CCCCCCcee
Confidence 999999999987 4444332113788999999988884444322 1 001156677664331 01 1112 3699
Q ss_pred EEecCccccccc--cceeeeeeeccCCC
Q psy5757 112 FLPHAPAESWMN--IPVCINYTATMPEG 137 (139)
Q Consensus 112 ~vi~~~~~~~~~--~p~~~~~~~~~p~g 137 (139)
++.+....++.. ......++.+.|+|
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~l~~~g 149 (257)
T COG0500 122 LVISLLVLHLLPPAKALRELLRVLKPGG 149 (257)
T ss_pred EEeeeeehhcCCHHHHHHHHHHhcCCCc
Confidence 996666566554 22233344455554
No 257
>KOG1269|consensus
Probab=97.05 E-value=0.00064 Score=52.18 Aligned_cols=100 Identities=18% Similarity=0.176 Sum_probs=75.1
Q ss_pred cCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhh
Q psy5757 26 HLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELM 104 (139)
Q Consensus 26 ~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 104 (139)
..+++..++|+|||.|.....+..... +++++++.++..+..+...... .+ ..+-.++..|+-+ .+
T Consensus 107 ~~~~~~~~~~~~~g~~~~~~~i~~f~~--~~~~Gl~~n~~e~~~~~~~~~~~~l-----~~k~~~~~~~~~~------~~ 173 (364)
T KOG1269|consen 107 SCFPGSKVLDVGTGVGGPSRYIAVFKK--AGVVGLDNNAYEAFRANELAKKAYL-----DNKCNFVVADFGK------MP 173 (364)
T ss_pred cCcccccccccCcCcCchhHHHHHhcc--CCccCCCcCHHHHHHHHHHHHHHHh-----hhhcceehhhhhc------CC
Confidence 356777899999999999999998764 3999999998888777666655 44 2344456566322 12
Q ss_pred ccCCceeEEecCccccccccce---eeeeeeccCCCC
Q psy5757 105 MKFDRYDFLPHAPAESWMNIPV---CINYTATMPEGS 138 (139)
Q Consensus 105 ~~~~~~D~vi~~~~~~~~~~p~---~~~~~~~~p~g~ 138 (139)
.+..+||.+.+.-+..+.+++. ...|++++|+|.
T Consensus 174 fedn~fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~ 210 (364)
T KOG1269|consen 174 FEDNTFDGVRFLEVVCHAPDLEKVYAEIYRVLKPGGL 210 (364)
T ss_pred CCccccCcEEEEeecccCCcHHHHHHHHhcccCCCce
Confidence 3356799999999989888875 556999999985
No 258
>KOG1596|consensus
Probab=97.04 E-value=0.00099 Score=48.27 Aligned_cols=83 Identities=19% Similarity=0.199 Sum_probs=61.1
Q ss_pred cCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757 26 HLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMM 105 (139)
Q Consensus 26 ~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 105 (139)
+++++.+||=+|+++|.....++.-..|++-|+++|.++..-..+...+++ -.|+.-++.|+.. ...+..
T Consensus 153 hikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkk-------RtNiiPIiEDArh-P~KYRm-- 222 (317)
T KOG1596|consen 153 HIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKK-------RTNIIPIIEDARH-PAKYRM-- 222 (317)
T ss_pred eecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhc-------cCCceeeeccCCC-chheee--
Confidence 578999999999999999999999999999999999997665554444433 2677777788765 222211
Q ss_pred cCCceeEEecCcc
Q psy5757 106 KFDRYDFLPHAPA 118 (139)
Q Consensus 106 ~~~~~D~vi~~~~ 118 (139)
-..-+|+||+.-+
T Consensus 223 lVgmVDvIFaDva 235 (317)
T KOG1596|consen 223 LVGMVDVIFADVA 235 (317)
T ss_pred eeeeEEEEeccCC
Confidence 1235788887654
No 259
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.01 E-value=0.00053 Score=54.15 Aligned_cols=88 Identities=11% Similarity=0.155 Sum_probs=49.4
Q ss_pred eEEEEcccCChhHHHHHHHcCCCceEEEE---eCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccCC
Q psy5757 32 KVLEIGSGSGYLTNMISELMNSTGQVIGI---EHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKFD 108 (139)
Q Consensus 32 ~iLdiG~G~G~~~~~l~~~~~~~~~v~~~---d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~ 108 (139)
.+||+|||+|+++.+|.++.- ....+ |..+..++.|.++ ++ -...+- +..-.++.+..
T Consensus 120 ~~LDvGcG~aSF~a~l~~r~V---~t~s~a~~d~~~~qvqfaleR---Gv---------pa~~~~----~~s~rLPfp~~ 180 (506)
T PF03141_consen 120 TALDVGCGVASFGAYLLERNV---TTMSFAPNDEHEAQVQFALER---GV---------PAMIGV----LGSQRLPFPSN 180 (506)
T ss_pred EEEeccceeehhHHHHhhCCc---eEEEcccccCCchhhhhhhhc---Cc---------chhhhh----hccccccCCcc
Confidence 579999999999999998752 22232 2333334444322 22 111111 11111345678
Q ss_pred ceeEEecCcc-ccccccc---eeeeeeeccCCCC
Q psy5757 109 RYDFLPHAPA-ESWMNIP---VCINYTATMPEGS 138 (139)
Q Consensus 109 ~~D~vi~~~~-~~~~~~p---~~~~~~~~~p~g~ 138 (139)
+||+|-|..+ ..|...- +-...+.+.|+|-
T Consensus 181 ~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGy 214 (506)
T PF03141_consen 181 AFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGY 214 (506)
T ss_pred chhhhhcccccccchhcccceeehhhhhhccCce
Confidence 8999977776 4455443 2223677888874
No 260
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=96.95 E-value=0.015 Score=42.09 Aligned_cols=78 Identities=10% Similarity=0.089 Sum_probs=45.5
Q ss_pred CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757 28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMK 106 (139)
Q Consensus 28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 106 (139)
..|++||=+| -.-..+.+++... ...+++.+|+++..++...+...+ ++ + ++..+.|+.+.++. .-
T Consensus 43 L~gk~il~lG-DDDLtSlA~al~~-~~~~I~VvDiDeRll~fI~~~a~~~gl------~-i~~~~~DlR~~LP~----~~ 109 (243)
T PF01861_consen 43 LEGKRILFLG-DDDLTSLALALTG-LPKRITVVDIDERLLDFINRVAEEEGL------P-IEAVHYDLRDPLPE----EL 109 (243)
T ss_dssp STT-EEEEES--TT-HHHHHHHHT---SEEEEE-S-HHHHHHHHHHHHHHT---------EEEE---TTS---T----TT
T ss_pred ccCCEEEEEc-CCcHHHHHHHhhC-CCCeEEEEEcCHHHHHHHHHHHHHcCC------c-eEEEEecccccCCH----HH
Confidence 4789999998 3334555555444 345999999999999999999988 65 4 89999998775542 12
Q ss_pred CCceeEEecCcc
Q psy5757 107 FDRYDFLPHAPA 118 (139)
Q Consensus 107 ~~~~D~vi~~~~ 118 (139)
.++||+++.+|+
T Consensus 110 ~~~fD~f~TDPP 121 (243)
T PF01861_consen 110 RGKFDVFFTDPP 121 (243)
T ss_dssp SS-BSEEEE---
T ss_pred hcCCCEEEeCCC
Confidence 368999999998
No 261
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=96.95 E-value=0.0012 Score=46.76 Aligned_cols=119 Identities=19% Similarity=0.233 Sum_probs=53.8
Q ss_pred cChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHH---HcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcE
Q psy5757 11 GGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISE---LMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHI 87 (139)
Q Consensus 11 ~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~---~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i 87 (139)
..|.-+..+.+.+-+ ++ ...|+|+|.-.|+-..+.|. ..+.+++|+++|++........... ... .+++
T Consensus 16 q~P~Dm~~~qeli~~-~k-Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~-hp~-----~~rI 87 (206)
T PF04989_consen 16 QYPQDMVAYQELIWE-LK-PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIES-HPM-----SPRI 87 (206)
T ss_dssp S-HHHHHHHHHHHHH-H---SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----------TTE
T ss_pred cCHHHHHHHHHHHHH-hC-CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhh-ccc-----cCce
Confidence 344434455555532 34 47999999999887776665 3346789999999743332211110 011 3789
Q ss_pred EEEEccchhhhHHH---hhhccCCceeEEecCccccccccc--eeeeeeeccCCCCC
Q psy5757 88 KFVALGMIKRIETV---ELMMKFDRYDFLPHAPAESWMNIP--VCINYTATMPEGSY 139 (139)
Q Consensus 88 ~~~~~d~~~~~~~~---~~~~~~~~~D~vi~~~~~~~~~~p--~~~~~~~~~p~g~~ 139 (139)
+++.||..+ .+.+ ..........+|+......+..-. ... |..++..|+|
T Consensus 88 ~~i~Gds~d-~~~~~~v~~~~~~~~~vlVilDs~H~~~hvl~eL~~-y~plv~~G~Y 142 (206)
T PF04989_consen 88 TFIQGDSID-PEIVDQVRELASPPHPVLVILDSSHTHEHVLAELEA-YAPLVSPGSY 142 (206)
T ss_dssp EEEES-SSS-THHHHTSGSS----SSEEEEESS----SSHHHHHHH-HHHT--TT-E
T ss_pred EEEECCCCC-HHHHHHHHHhhccCCceEEEECCCccHHHHHHHHHH-hCccCCCCCE
Confidence 999999776 3222 112122344677776652222211 111 6666666665
No 262
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=96.92 E-value=0.0026 Score=45.34 Aligned_cols=46 Identities=17% Similarity=0.228 Sum_probs=35.0
Q ss_pred CCeEEEEcccCChhHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHH
Q psy5757 30 NSKVLEIGSGSGYLTNMISELMNS-TGQVIGIEHVPQLVNSSIQNIL 75 (139)
Q Consensus 30 ~~~iLdiG~G~G~~~~~l~~~~~~-~~~v~~~d~~~~~~~~a~~~~~ 75 (139)
.-.++|.+||+|++.-.+...-.. -..+++.|+++.+++.|++|+.
T Consensus 52 p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~ 98 (246)
T PF11599_consen 52 PYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLS 98 (246)
T ss_dssp -EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHH
T ss_pred CeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhh
Confidence 348999999999987777664422 2489999999999999999983
No 263
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=96.83 E-value=0.0042 Score=44.85 Aligned_cols=100 Identities=17% Similarity=0.157 Sum_probs=58.3
Q ss_pred HHHHHHHHhccc---C-CCCCeEEEEcccCCh-hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh--hccccccCCcE
Q psy5757 15 AILTYLSIIQPH---L-NENSKVLEIGSGSGY-LTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH--SNARLLTDGHI 87 (139)
Q Consensus 15 ~~~~~~~~l~~~---~-~~~~~iLdiG~G~G~-~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~--~~~~~~~~~~i 87 (139)
.++++.++|..- + .++-++||||.|.-- ..+-=...++ =+.+|.|+|+..++.|+..+.. ++ ...+
T Consensus 60 Yih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYg--wrfvGseid~~sl~sA~~ii~~N~~l-----~~~I 132 (292)
T COG3129 60 YIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYG--WRFVGSEIDSQSLSSAKAIISANPGL-----ERAI 132 (292)
T ss_pred HHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeec--ceeecCccCHHHHHHHHHHHHcCcch-----hhhe
Confidence 366777777521 2 245588999877432 1111111222 2789999999999999998876 22 2334
Q ss_pred EEEEc-cchhhhHHHhhhccCCceeEEecCccccccc
Q psy5757 88 KFVAL-GMIKRIETVELMMKFDRYDFLPHAPAESWMN 123 (139)
Q Consensus 88 ~~~~~-d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~ 123 (139)
.+..- |-...++-+ ....+.||++.|||+||--.
T Consensus 133 ~lr~qk~~~~if~gi--ig~nE~yd~tlCNPPFh~s~ 167 (292)
T COG3129 133 RLRRQKDSDAIFNGI--IGKNERYDATLCNPPFHDSA 167 (292)
T ss_pred eEEeccCcccccccc--ccccceeeeEecCCCcchhH
Confidence 44332 211111111 12346899999999999643
No 264
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.82 E-value=0.01 Score=42.04 Aligned_cols=80 Identities=20% Similarity=0.312 Sum_probs=59.7
Q ss_pred CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757 27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMK 106 (139)
Q Consensus 27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 106 (139)
++++.+||=+|+.+|.+..-++.-.+ ++.++++|.++......-....+ -+|+--+.+|+.. .+.+..-
T Consensus 74 i~~g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~~-------R~Ni~PIL~DA~~-P~~Y~~~-- 142 (231)
T COG1889 74 IKEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAEK-------RPNIIPILEDARK-PEKYRHL-- 142 (231)
T ss_pred cCCCCEEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHHHHHHHHh-------CCCceeeecccCC-cHHhhhh--
Confidence 57899999999999999999999886 78999999999887776665554 2577777888765 2222111
Q ss_pred CCceeEEecCc
Q psy5757 107 FDRYDFLPHAP 117 (139)
Q Consensus 107 ~~~~D~vi~~~ 117 (139)
.+.+|+++..-
T Consensus 143 Ve~VDviy~DV 153 (231)
T COG1889 143 VEKVDVIYQDV 153 (231)
T ss_pred cccccEEEEec
Confidence 24578886554
No 265
>PHA01634 hypothetical protein
Probab=96.74 E-value=0.0057 Score=40.18 Aligned_cols=47 Identities=13% Similarity=-0.031 Sum_probs=42.6
Q ss_pred CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh
Q psy5757 28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH 76 (139)
Q Consensus 28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~ 76 (139)
..+++|+|+|++-|..+.+++.+... .|+++|.++...+..+++.+.
T Consensus 27 vk~KtV~dIGA~iGdSaiYF~l~GAK--~Vva~E~~~kl~k~~een~k~ 73 (156)
T PHA01634 27 VYQRTIQIVGADCGSSALYFLLRGAS--FVVQYEKEEKLRKKWEEVCAY 73 (156)
T ss_pred ecCCEEEEecCCccchhhHHhhcCcc--EEEEeccCHHHHHHHHHHhhh
Confidence 46789999999999999999998865 999999999999999998876
No 266
>KOG1122|consensus
Probab=96.73 E-value=0.0063 Score=47.28 Aligned_cols=81 Identities=14% Similarity=0.158 Sum_probs=65.6
Q ss_pred CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757 28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMK 106 (139)
Q Consensus 28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 106 (139)
+++.+|||.++-.|+-+..+|..++..+.+++.|.+.+.+...+.++.+ +. .+..+...|..+ ++. ...+
T Consensus 240 q~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv------~ntiv~n~D~~e-f~~--~~~~ 310 (460)
T KOG1122|consen 240 QPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGV------TNTIVSNYDGRE-FPE--KEFP 310 (460)
T ss_pred CCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCC------CceEEEccCccc-ccc--cccC
Confidence 7899999999999999999999998889999999999999999999998 65 787788888664 321 1112
Q ss_pred CCceeEEecCcc
Q psy5757 107 FDRYDFLPHAPA 118 (139)
Q Consensus 107 ~~~~D~vi~~~~ 118 (139)
.+||-|....+
T Consensus 311 -~~fDRVLLDAP 321 (460)
T KOG1122|consen 311 -GSFDRVLLDAP 321 (460)
T ss_pred -cccceeeecCC
Confidence 27888876655
No 267
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=96.70 E-value=0.0049 Score=45.56 Aligned_cols=72 Identities=14% Similarity=0.045 Sum_probs=50.9
Q ss_pred eEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccCCcee
Q psy5757 32 KVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKFDRYD 111 (139)
Q Consensus 32 ~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~D 111 (139)
+++|+.||.|+.+..+....-. .+.++|+++.+++..+.+... . .+.+|+.+ +. .......+|
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~--~v~a~e~~~~a~~~~~~N~~~----------~-~~~~Di~~-~~---~~~~~~~~D 64 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFE--IVAANEIDKSAAETYEANFPN----------K-LIEGDITK-ID---EKDFIPDID 64 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCE--EEEEEeCCHHHHHHHHHhCCC----------C-CccCcccc-Cc---hhhcCCCCC
Confidence 6899999999999988876532 788999999998887777533 1 45566544 21 111024589
Q ss_pred EEecCcccc
Q psy5757 112 FLPHAPAES 120 (139)
Q Consensus 112 ~vi~~~~~~ 120 (139)
+++..++.+
T Consensus 65 ~l~~gpPCq 73 (275)
T cd00315 65 LLTGGFPCQ 73 (275)
T ss_pred EEEeCCCCh
Confidence 999988744
No 268
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=96.44 E-value=0.0026 Score=44.71 Aligned_cols=101 Identities=17% Similarity=0.249 Sum_probs=61.8
Q ss_pred CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHH------HHHhhccccccCCcEEEEEccchhhhHH
Q psy5757 27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQ------NILHSNARLLTDGHIKFVALGMIKRIET 100 (139)
Q Consensus 27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~------~~~~~~~~~~~~~~i~~~~~d~~~~~~~ 100 (139)
+++++.|+|+-.|.|++++-++...++++.|+++-..+...-..+. ..+... ..|.+.+-.+. ..
T Consensus 46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~-----~aN~e~~~~~~----~A 116 (238)
T COG4798 46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPV-----YANVEVIGKPL----VA 116 (238)
T ss_pred cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhh-----hhhhhhhCCcc----cc
Confidence 4789999999999999999999999999999988655331111110 011111 13333332221 11
Q ss_pred HhhhccCCceeEEecCcccccccc----------ceeeeeeeccCCCCC
Q psy5757 101 VELMMKFDRYDFLPHAPAESWMNI----------PVCINYTATMPEGSY 139 (139)
Q Consensus 101 ~~~~~~~~~~D~vi~~~~~~~~~~----------p~~~~~~~~~p~g~~ 139 (139)
+ . ..+..|+++.+...|-|.. .....+..++|+|+|
T Consensus 117 ~--~-~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~ 162 (238)
T COG4798 117 L--G-APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVY 162 (238)
T ss_pred c--C-CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEE
Confidence 1 1 3455677777666554432 234558899999986
No 269
>KOG1331|consensus
Probab=96.34 E-value=0.00097 Score=49.20 Aligned_cols=90 Identities=17% Similarity=0.213 Sum_probs=61.4
Q ss_pred CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757 27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMK 106 (139)
Q Consensus 27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 106 (139)
...+..++|+|||.|..+. ..|.+..++.|.+...+..+++. .......+|+++ .+..
T Consensus 43 ~~~gsv~~d~gCGngky~~-----~~p~~~~ig~D~c~~l~~~ak~~-----------~~~~~~~ad~l~------~p~~ 100 (293)
T KOG1331|consen 43 QPTGSVGLDVGCGNGKYLG-----VNPLCLIIGCDLCTGLLGGAKRS-----------GGDNVCRADALK------LPFR 100 (293)
T ss_pred cCCcceeeecccCCcccCc-----CCCcceeeecchhhhhccccccC-----------CCceeehhhhhc------CCCC
Confidence 3457789999999996332 12566899999998777766542 111466677655 2334
Q ss_pred CCceeEEecCccccccccce------eeeeeeccCCCC
Q psy5757 107 FDRYDFLPHAPAESWMNIPV------CINYTATMPEGS 138 (139)
Q Consensus 107 ~~~~D~vi~~~~~~~~~~p~------~~~~~~~~p~g~ 138 (139)
..+||.+++-.+.||+..-. ....+.+.|+|.
T Consensus 101 ~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~ 138 (293)
T KOG1331|consen 101 EESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGN 138 (293)
T ss_pred CCccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCc
Confidence 67899999999999987543 333566677664
No 270
>KOG1099|consensus
Probab=96.09 E-value=0.0077 Score=43.46 Aligned_cols=96 Identities=13% Similarity=0.215 Sum_probs=66.4
Q ss_pred CCCCeEEEEcccCChhHHHHHHHcCC----Cc----eEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchh--h
Q psy5757 28 NENSKVLEIGSGSGYLTNMISELMNS----TG----QVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIK--R 97 (139)
Q Consensus 28 ~~~~~iLdiG~G~G~~~~~l~~~~~~----~~----~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~--~ 97 (139)
..-++++|+++..|+++..+++++-. .. .++++|+++ +. . -+.+..+++|+++ .
T Consensus 40 ~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~---------Ma-P------I~GV~qlq~DIT~~st 103 (294)
T KOG1099|consen 40 EGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQP---------MA-P------IEGVIQLQGDITSAST 103 (294)
T ss_pred hhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEeccc---------CC-c------cCceEEeecccCCHhH
Confidence 34468999999999999999998732 11 389999885 11 1 2677888899876 2
Q ss_pred hHHHhhhccCCceeEEecCcc-----cccccc---------ceeeeeeeccCCCCC
Q psy5757 98 IETVELMMKFDRYDFLPHAPA-----ESWMNI---------PVCINYTATMPEGSY 139 (139)
Q Consensus 98 ~~~~~~~~~~~~~D~vi~~~~-----~~~~~~---------p~~~~~~~~~p~g~~ 139 (139)
.+.+-.....++.|+|+|..+ +|-+.. ...+.-..++|+|+|
T Consensus 104 ae~Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~F 159 (294)
T KOG1099|consen 104 AEAIIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSF 159 (294)
T ss_pred HHHHHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCee
Confidence 233333344567999999887 666554 245556778888875
No 271
>KOG2651|consensus
Probab=96.04 E-value=0.028 Score=43.42 Aligned_cols=44 Identities=25% Similarity=0.353 Sum_probs=37.0
Q ss_pred CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHH
Q psy5757 28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQN 73 (139)
Q Consensus 28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~ 73 (139)
.+-..++|+|+|.|+++.+++-.++- .|.+||-|....+.|++.
T Consensus 152 ~gi~~vvD~GaG~G~LSr~lSl~y~l--sV~aIegsq~~~~ra~rL 195 (476)
T KOG2651|consen 152 TGIDQVVDVGAGQGHLSRFLSLGYGL--SVKAIEGSQRLVERAQRL 195 (476)
T ss_pred cCCCeeEEcCCCchHHHHHHhhccCc--eEEEeccchHHHHHHHHH
Confidence 45678999999999999999999875 999999997776666543
No 272
>KOG4058|consensus
Probab=96.02 E-value=0.024 Score=38.28 Aligned_cols=57 Identities=25% Similarity=0.343 Sum_probs=43.0
Q ss_pred HHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh
Q psy5757 16 ILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH 76 (139)
Q Consensus 16 ~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~ 76 (139)
+...+.++. -.+..+.+|+|+|.|....+.++..-. ..+|+|.+|-.+..++-...+
T Consensus 61 v~nVLSll~--~n~~GklvDlGSGDGRiVlaaar~g~~--~a~GvELNpwLVaysrl~a~R 117 (199)
T KOG4058|consen 61 VENVLSLLR--GNPKGKLVDLGSGDGRIVLAAARCGLR--PAVGVELNPWLVAYSRLHAWR 117 (199)
T ss_pred HHHHHHHcc--CCCCCcEEeccCCCceeehhhhhhCCC--cCCceeccHHHHHHHHHHHHH
Confidence 444444443 244468999999999999999998732 789999999998888766654
No 273
>KOG2352|consensus
Probab=95.98 E-value=0.031 Score=44.22 Aligned_cols=85 Identities=13% Similarity=0.209 Sum_probs=63.1
Q ss_pred CCCCC-eEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757 27 LNENS-KVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMM 105 (139)
Q Consensus 27 ~~~~~-~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 105 (139)
..+.. +++-+|||.-.++..+-+.+.. .++.+|+|+..++.....-... .+...+...|+.. + ..
T Consensus 45 ~~p~~~~~l~lGCGNS~l~e~ly~~G~~--dI~~iD~S~V~V~~m~~~~~~~------~~~~~~~~~d~~~----l--~f 110 (482)
T KOG2352|consen 45 LSPSDFKILQLGCGNSELSEHLYKNGFE--DITNIDSSSVVVAAMQVRNAKE------RPEMQMVEMDMDQ----L--VF 110 (482)
T ss_pred hchhhceeEeecCCCCHHHHHHHhcCCC--CceeccccHHHHHHHHhccccC------CcceEEEEecchh----c--cC
Confidence 34445 8999999999999999888765 8999999998888876654332 2567788888544 2 23
Q ss_pred cCCceeEEecCccccccccc
Q psy5757 106 KFDRYDFLPHAPAESWMNIP 125 (139)
Q Consensus 106 ~~~~~D~vi~~~~~~~~~~p 125 (139)
+.++||+|+.-..++....+
T Consensus 111 edESFdiVIdkGtlDal~~d 130 (482)
T KOG2352|consen 111 EDESFDIVIDKGTLDALFED 130 (482)
T ss_pred CCcceeEEEecCccccccCC
Confidence 46789999988887765543
No 274
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=95.98 E-value=0.013 Score=37.22 Aligned_cols=45 Identities=13% Similarity=0.238 Sum_probs=32.6
Q ss_pred HHHHHHHhcccCC--CCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCC
Q psy5757 16 ILTYLSIIQPHLN--ENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHV 63 (139)
Q Consensus 16 ~~~~~~~l~~~~~--~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~ 63 (139)
.++++........ +....+|+|||+|-+.--|....- .-.|+|.-
T Consensus 43 AAyLi~LW~~~~~~~~~~~FVDlGCGNGLLV~IL~~EGy---~G~GiD~R 89 (112)
T PF07757_consen 43 AAYLIELWRDMYGEQKFQGFVDLGCGNGLLVYILNSEGY---PGWGIDAR 89 (112)
T ss_pred HHHHHHHHhcccCCCCCCceEEccCCchHHHHHHHhCCC---Cccccccc
Confidence 4455555554332 456799999999999988888775 67888865
No 275
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=95.95 E-value=0.048 Score=43.68 Aligned_cols=108 Identities=14% Similarity=0.100 Sum_probs=68.3
Q ss_pred hcccccChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcC---CCceEEEEeCCHHHHHHHHHHHHh-hcccc
Q psy5757 6 IGAAIGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMN---STGQVIGIEHVPQLVNSSIQNILH-SNARL 81 (139)
Q Consensus 6 ~~~~~~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~---~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~ 81 (139)
-|..+.+.+++..+.+.+.+...++..+.|..||+|.+.....+... ...++++.|..+.+...++.++.. +.
T Consensus 194 ~g~~~Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~--- 270 (501)
T TIGR00497 194 GGEFFTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNI--- 270 (501)
T ss_pred CceeeCcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCC---
Confidence 35566777777777776654334667899999999998876554331 124689999999999999988654 22
Q ss_pred ccCCcEEEEEccchhhhHHHhhhccCCceeEEecCccccc
Q psy5757 82 LTDGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAESW 121 (139)
Q Consensus 82 ~~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~ 121 (139)
..+......+|-...+. .....++|++++||++..
T Consensus 271 -~~~t~~~~~~dtl~~~d----~~~~~~~D~v~~NpPf~~ 305 (501)
T TIGR00497 271 -DYANFNIINADTLTTKE----WENENGFEVVVSNPPYSI 305 (501)
T ss_pred -CccccCcccCCcCCCcc----ccccccCCEEeecCCccc
Confidence 01122233344222111 001245899999998643
No 276
>KOG2671|consensus
Probab=95.93 E-value=0.013 Score=44.64 Aligned_cols=82 Identities=13% Similarity=0.151 Sum_probs=60.0
Q ss_pred cCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHH-------HHHHHHh-hccccccCCcEEEEEccchh-
Q psy5757 26 HLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNS-------SIQNILH-SNARLLTDGHIKFVALGMIK- 96 (139)
Q Consensus 26 ~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~-------a~~~~~~-~~~~~~~~~~i~~~~~d~~~- 96 (139)
++++|.-|.|--.|||++....+..+. .|+|.||+-.++.. .+.+++. +. ...-+.+..+|..+
T Consensus 205 mv~pGdivyDPFVGTGslLvsaa~FGa---~viGtDIDyr~vragrg~~~si~aNFkQYg~----~~~fldvl~~D~sn~ 277 (421)
T KOG2671|consen 205 MVKPGDIVYDPFVGTGSLLVSAAHFGA---YVIGTDIDYRTVRAGRGEDESIKANFKQYGS----SSQFLDVLTADFSNP 277 (421)
T ss_pred ccCCCCEEecCccccCceeeehhhhcc---eeeccccchheeecccCCCcchhHhHHHhCC----cchhhheeeecccCc
Confidence 468999999999999999999999876 99999999777662 2444544 32 12335777888665
Q ss_pred hhHHHhhhccCCceeEEecCcccc
Q psy5757 97 RIETVELMMKFDRYDFLPHAPAES 120 (139)
Q Consensus 97 ~~~~~~~~~~~~~~D~vi~~~~~~ 120 (139)
.+. ....||+|++.|+..
T Consensus 278 ~~r------sn~~fDaIvcDPPYG 295 (421)
T KOG2671|consen 278 PLR------SNLKFDAIVCDPPYG 295 (421)
T ss_pred chh------hcceeeEEEeCCCcc
Confidence 222 134699999999854
No 277
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=95.89 E-value=0.065 Score=41.53 Aligned_cols=79 Identities=15% Similarity=0.182 Sum_probs=54.5
Q ss_pred CCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCC-cEEEEEccchhhhHHHhhhcc
Q psy5757 29 ENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDG-HIKFVALGMIKRIETVELMMK 106 (139)
Q Consensus 29 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~-~i~~~~~d~~~~~~~~~~~~~ 106 (139)
.+.++||.=+|+|--+...+...+...+|+.-|+|+++++..++|+.. ++ .. ++++.+.|+...+. ..
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~-----~~~~~~v~~~DAn~ll~-----~~ 118 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGL-----EDERIEVSNMDANVLLY-----SR 118 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT------SGCCEEEEES-HHHHHC-----HS
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccc-----cCceEEEehhhHHHHhh-----hc
Confidence 345899999999999999999853334999999999999999999988 54 23 58888888655332 12
Q ss_pred CCceeEEecCc
Q psy5757 107 FDRYDFLPHAP 117 (139)
Q Consensus 107 ~~~~D~vi~~~ 117 (139)
...||+|=..|
T Consensus 119 ~~~fD~IDlDP 129 (377)
T PF02005_consen 119 QERFDVIDLDP 129 (377)
T ss_dssp TT-EEEEEE--
T ss_pred cccCCEEEeCC
Confidence 45688884444
No 278
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=95.81 E-value=0.037 Score=41.20 Aligned_cols=71 Identities=18% Similarity=0.165 Sum_probs=48.8
Q ss_pred eEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccCCcee
Q psy5757 32 KVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKFDRYD 111 (139)
Q Consensus 32 ~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~D 111 (139)
+++|+.||-|+++..+-+..-. .+.++|+++.+.+.-+.+. + ....+|+.+.-.. ..+ . .+|
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~--~~~a~e~~~~a~~~y~~N~----------~--~~~~~Di~~~~~~-~l~--~-~~D 63 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFE--VVWAVEIDPDACETYKANF----------P--EVICGDITEIDPS-DLP--K-DVD 63 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEE--EEEEEESSHHHHHHHHHHH----------T--EEEESHGGGCHHH-HHH--H-T-S
T ss_pred cEEEEccCccHHHHHHHhcCcE--EEEEeecCHHHHHhhhhcc----------c--ccccccccccccc-ccc--c-cce
Confidence 6899999999999999888732 7899999999777766664 3 6778887762221 111 1 489
Q ss_pred EEecCcccc
Q psy5757 112 FLPHAPAES 120 (139)
Q Consensus 112 ~vi~~~~~~ 120 (139)
+++..++.+
T Consensus 64 ~l~ggpPCQ 72 (335)
T PF00145_consen 64 LLIGGPPCQ 72 (335)
T ss_dssp EEEEE---T
T ss_pred EEEeccCCc
Confidence 999888733
No 279
>KOG1227|consensus
Probab=95.72 E-value=0.0038 Score=46.58 Aligned_cols=48 Identities=19% Similarity=0.233 Sum_probs=41.4
Q ss_pred CCCCCeEEEEcccCChhHH-HHHHHcCCCceEEEEeCCHHHHHHHHHHHHh
Q psy5757 27 LNENSKVLEIGSGSGYLTN-MISELMNSTGQVIGIEHVPQLVNSSIQNILH 76 (139)
Q Consensus 27 ~~~~~~iLdiG~G~G~~~~-~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~ 76 (139)
...+..|+|+-+|-|+++. .+...... .|+++|.+|..++..+++++.
T Consensus 192 sc~~eviVDLYAGIGYFTlpflV~agAk--~V~A~EwNp~svEaLrR~~~~ 240 (351)
T KOG1227|consen 192 SCDGEVIVDLYAGIGYFTLPFLVTAGAK--TVFACEWNPWSVEALRRNAEA 240 (351)
T ss_pred ccccchhhhhhcccceEEeehhhccCcc--EEEEEecCHHHHHHHHHHHHh
Confidence 3566899999999999999 66666643 999999999999999999877
No 280
>KOG0822|consensus
Probab=95.58 E-value=0.06 Score=43.29 Aligned_cols=77 Identities=14% Similarity=0.242 Sum_probs=55.8
Q ss_pred CeEEEEcccCChhHHHH---HHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccC
Q psy5757 31 SKVLEIGSGSGYLTNMI---SELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKF 107 (139)
Q Consensus 31 ~~iLdiG~G~G~~~~~l---~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 107 (139)
..|.-+|+|.|-+.... ++....+.+++++|.+|.++...+.+--..+ ..+++++..|+.+ |. ++.
T Consensus 369 tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W-----~~~Vtii~~DMR~-w~-----ap~ 437 (649)
T KOG0822|consen 369 TVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECW-----DNRVTIISSDMRK-WN-----APR 437 (649)
T ss_pred EEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhh-----cCeeEEEeccccc-cC-----Cch
Confidence 36789999999765544 4444456689999999999988877433344 4789999999887 32 235
Q ss_pred CceeEEecCcc
Q psy5757 108 DRYDFLPHAPA 118 (139)
Q Consensus 108 ~~~D~vi~~~~ 118 (139)
.+.|+++|-..
T Consensus 438 eq~DI~VSELL 448 (649)
T KOG0822|consen 438 EQADIIVSELL 448 (649)
T ss_pred hhccchHHHhh
Confidence 67899877554
No 281
>KOG2352|consensus
Probab=95.54 E-value=0.012 Score=46.50 Aligned_cols=81 Identities=16% Similarity=0.134 Sum_probs=60.8
Q ss_pred CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhh-c
Q psy5757 28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELM-M 105 (139)
Q Consensus 28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~-~ 105 (139)
..+..+|-+|-|+|.+...+....+ ..+++++|++|++++.|+..+.. .. .+..+...|+.+.+.+.... .
T Consensus 294 ~~~~~~lvvg~ggG~l~sfl~~~~p-~~~i~~ve~dP~~l~va~q~f~f~q~------~r~~V~i~dGl~~~~~~~k~~~ 366 (482)
T KOG2352|consen 294 DTGGKQLVVGLGGGGLPSFLHMSLP-KFQITAVEIDPEMLEVATQYFGFMQS------DRNKVHIADGLDFLQRTAKSQQ 366 (482)
T ss_pred cccCcEEEEecCCCccccceeeecC-ccceeEEEEChhHhhccHhhhchhhh------hhhhhhHhhchHHHHHHhhccc
Confidence 4556788899999999999999884 66999999999999999998876 32 45566667777655544332 2
Q ss_pred cCCceeEEec
Q psy5757 106 KFDRYDFLPH 115 (139)
Q Consensus 106 ~~~~~D~vi~ 115 (139)
...+||++..
T Consensus 367 ~~~~~dvl~~ 376 (482)
T KOG2352|consen 367 EDICPDVLMV 376 (482)
T ss_pred cccCCcEEEE
Confidence 3347999854
No 282
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=95.26 E-value=0.059 Score=39.24 Aligned_cols=46 Identities=22% Similarity=0.304 Sum_probs=36.3
Q ss_pred CeEEEEcccCChhHHHHHHHcCC-------CceEEEEeCCHHHHHHHHHHHHh
Q psy5757 31 SKVLEIGSGSGYLTNMISELMNS-------TGQVIGIEHVPQLVNSSIQNILH 76 (139)
Q Consensus 31 ~~iLdiG~G~G~~~~~l~~~~~~-------~~~v~~~d~~~~~~~~a~~~~~~ 76 (139)
-+|+|+|+|+|.++.-+++.+.. ..+++-+|+|+.+.+.-++.+..
T Consensus 20 ~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 20 LRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred cEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 58999999999999999887752 25899999999888777777654
No 283
>KOG2198|consensus
Probab=94.95 E-value=0.11 Score=39.93 Aligned_cols=64 Identities=17% Similarity=0.263 Sum_probs=50.0
Q ss_pred CCCCCeEEEEcccCChhHHHHHHHcCC---CceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccch
Q psy5757 27 LNENSKVLEIGSGSGYLTNMISELMNS---TGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMI 95 (139)
Q Consensus 27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~---~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~ 95 (139)
++++.+|||.++..|+-+..+.+..-+ ++.|++-|.++.-+......+.+ +..+++.+...|+.
T Consensus 153 v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~-----l~~~~~~v~~~~~~ 219 (375)
T KOG2198|consen 153 VKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKR-----LPSPNLLVTNHDAS 219 (375)
T ss_pred cCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhc-----cCCcceeeecccce
Confidence 689999999999999999999988732 34899999999988888888866 22356555555544
No 284
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=94.87 E-value=0.13 Score=32.39 Aligned_cols=66 Identities=17% Similarity=0.208 Sum_probs=44.1
Q ss_pred ccCChhHHHHHHHcCCCc-eEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccCCceeEEecC
Q psy5757 38 SGSGYLTNMISELMNSTG-QVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKFDRYDFLPHA 116 (139)
Q Consensus 38 ~G~G~~~~~l~~~~~~~~-~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~ 116 (139)
||.|..+..+++.+.... .++.+|.+++.++.+++. .+.++.+|..+ ...+ ..+...+.+.+++.
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~------------~~~~i~gd~~~-~~~l-~~a~i~~a~~vv~~ 69 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE------------GVEVIYGDATD-PEVL-ERAGIEKADAVVIL 69 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT------------TSEEEES-TTS-HHHH-HHTTGGCESEEEEE
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc------------ccccccccchh-hhHH-hhcCccccCEEEEc
Confidence 677889999988885555 799999999887776553 36688899876 2222 23344567766655
Q ss_pred c
Q psy5757 117 P 117 (139)
Q Consensus 117 ~ 117 (139)
.
T Consensus 70 ~ 70 (116)
T PF02254_consen 70 T 70 (116)
T ss_dssp S
T ss_pred c
Confidence 4
No 285
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=94.73 E-value=0.18 Score=38.21 Aligned_cols=77 Identities=19% Similarity=0.089 Sum_probs=52.4
Q ss_pred CCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccCCc
Q psy5757 30 NSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKFDR 109 (139)
Q Consensus 30 ~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~ 109 (139)
..+++|+.||-|++...+-...-. -+.++|+++.+++.-+.+.. ...++..|+.+... .....-.
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~--~~~a~Eid~~a~~ty~~n~~----------~~~~~~~di~~~~~---~~~~~~~ 67 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFE--IVFANEIDPPAVATYKANFP----------HGDIILGDIKELDG---EALRKSD 67 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCe--EEEEEecCHHHHHHHHHhCC----------CCceeechHhhcCh---hhccccC
Confidence 357999999999999888887632 78899999988887766653 23455566443111 0101116
Q ss_pred eeEEecCccccc
Q psy5757 110 YDFLPHAPAESW 121 (139)
Q Consensus 110 ~D~vi~~~~~~~ 121 (139)
+|+++..++.+-
T Consensus 68 ~DvligGpPCQ~ 79 (328)
T COG0270 68 VDVLIGGPPCQD 79 (328)
T ss_pred CCEEEeCCCCcc
Confidence 899999988543
No 286
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=94.67 E-value=0.26 Score=38.01 Aligned_cols=74 Identities=12% Similarity=0.125 Sum_probs=57.0
Q ss_pred CCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccCCc
Q psy5757 30 NSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKFDR 109 (139)
Q Consensus 30 ~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~ 109 (139)
..+|+|.=+|||.-+...+...+.. +++.-|+||.+++..++|...+. ..+...+..|....+++. ...
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~-~v~lNDisp~Avelik~Nv~~N~-----~~~~~v~n~DAN~lm~~~-----~~~ 121 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVV-KVVLNDISPKAVELIKENVRLNS-----GEDAEVINKDANALLHEL-----HRA 121 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCcc-EEEEccCCHHHHHHHHHHHHhcC-----cccceeecchHHHHHHhc-----CCC
Confidence 6789999999999999999988644 89999999999999999998831 256666667765544421 245
Q ss_pred eeEEe
Q psy5757 110 YDFLP 114 (139)
Q Consensus 110 ~D~vi 114 (139)
||+|=
T Consensus 122 fd~ID 126 (380)
T COG1867 122 FDVID 126 (380)
T ss_pred ccEEe
Confidence 67763
No 287
>PTZ00357 methyltransferase; Provisional
Probab=94.59 E-value=0.16 Score=42.44 Aligned_cols=87 Identities=10% Similarity=0.090 Sum_probs=52.0
Q ss_pred eEEEEcccCChhHHHHHH---HcCCCceEEEEeCCHHHHHHHHHHHHh--hccc--cccCCcEEEEEccchhhhHH----
Q psy5757 32 KVLEIGSGSGYLTNMISE---LMNSTGQVIGIEHVPQLVNSSIQNILH--SNAR--LLTDGHIKFVALGMIKRIET---- 100 (139)
Q Consensus 32 ~iLdiG~G~G~~~~~l~~---~~~~~~~v~~~d~~~~~~~~a~~~~~~--~~~~--~~~~~~i~~~~~d~~~~~~~---- 100 (139)
.|+-+|+|.|-+.....+ ..+.+.+++++|.++........+... .+.. ..-..+++++..|+.++-..
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 589999999976555544 334566899999997755554444321 1100 00124689999998873211
Q ss_pred -HhhhccCCceeEEecCcc
Q psy5757 101 -VELMMKFDRYDFLPHAPA 118 (139)
Q Consensus 101 -~~~~~~~~~~D~vi~~~~ 118 (139)
...+...+++|++||=..
T Consensus 783 s~~~P~~~gKaDIVVSELL 801 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVSELL 801 (1072)
T ss_pred cccccccccccceehHhhh
Confidence 001112347999988543
No 288
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.59 E-value=0.12 Score=39.09 Aligned_cols=70 Identities=14% Similarity=0.063 Sum_probs=48.0
Q ss_pred EEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccCCceeE
Q psy5757 33 VLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKFDRYDF 112 (139)
Q Consensus 33 iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~ 112 (139)
++|+.||-|+++..+-+..-. .+.++|+++.+.+.-+.+. ++ .++.+|+.+ +... ....+|+
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~--~~~a~e~~~~a~~ty~~N~----------~~-~~~~~Di~~----~~~~-~~~~~dv 62 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFK--CVFASEIDKYAQKTYEANF----------GN-KVPFGDITK----ISPS-DIPDFDI 62 (315)
T ss_pred CEEEecCccHHHHHHHHcCCe--EEEEEeCCHHHHHHHHHhC----------CC-CCCccChhh----hhhh-hCCCcCE
Confidence 589999999999999876631 5678999998888777664 22 345567444 2111 1234899
Q ss_pred EecCcccc
Q psy5757 113 LPHAPAES 120 (139)
Q Consensus 113 vi~~~~~~ 120 (139)
++..++.+
T Consensus 63 l~gg~PCq 70 (315)
T TIGR00675 63 LLGGFPCQ 70 (315)
T ss_pred EEecCCCc
Confidence 98887743
No 289
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=94.24 E-value=0.28 Score=37.43 Aligned_cols=90 Identities=12% Similarity=0.095 Sum_probs=42.4
Q ss_pred CCCCeEEEEcccCChhHHHHHHHc---------------CCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCc--EEE
Q psy5757 28 NENSKVLEIGSGSGYLTNMISELM---------------NSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGH--IKF 89 (139)
Q Consensus 28 ~~~~~iLdiG~G~G~~~~~l~~~~---------------~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~--i~~ 89 (139)
.+.-+|+|+||.+|..+..++... .|+-+|+--|.-.+=....=+.+.. ... .....+ +.-
T Consensus 15 ~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~-~~~~~~~f~~g 93 (334)
T PF03492_consen 15 PKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQS-LKKFRNYFVSG 93 (334)
T ss_dssp TTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHH-HHHTTSEEEEE
T ss_pred CCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhc-cCCCceEEEEe
Confidence 455689999999999888775433 1123667777432222221111111 000 000022 233
Q ss_pred EEccchhhhHHHhhhccCCceeEEecCcccccccc
Q psy5757 90 VALGMIKRIETVELMMKFDRYDFLPHAPAESWMNI 124 (139)
Q Consensus 90 ~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~~~~~ 124 (139)
+.+++.+ ++ .|..++|+++|..++||+..
T Consensus 94 vpgSFy~---rL---fP~~Svh~~~Ss~alHWLS~ 122 (334)
T PF03492_consen 94 VPGSFYG---RL---FPSNSVHFGHSSYALHWLSQ 122 (334)
T ss_dssp EES-TTS--------S-TT-EEEEEEES-TTB-SS
T ss_pred cCchhhh---cc---CCCCceEEEEEechhhhccc
Confidence 4455432 22 35678999999999999876
No 290
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=94.22 E-value=0.3 Score=37.54 Aligned_cols=68 Identities=22% Similarity=0.211 Sum_probs=46.3
Q ss_pred cccChHHHH--------HHHHHhcccCC-CCCeEEEEcccCChhHHHHHHHc---CC----CceEEEEeCCHHHHHHHHH
Q psy5757 9 AIGGISAIL--------TYLSIIQPHLN-ENSKVLEIGSGSGYLTNMISELM---NS----TGQVIGIEHVPQLVNSSIQ 72 (139)
Q Consensus 9 ~~~~~~~~~--------~~~~~l~~~~~-~~~~iLdiG~G~G~~~~~l~~~~---~~----~~~v~~~d~~~~~~~~a~~ 72 (139)
++++|++-. ++++.+..... ..-.++|+|+|+|.+..-+.+.. .| ..++.-+|+|++..+.=++
T Consensus 48 FiTApels~lFGella~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~ 127 (370)
T COG1565 48 FITAPELSQLFGELLAEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKE 127 (370)
T ss_pred eeechhHHHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHH
Confidence 566776533 33333332223 34579999999999988887765 22 4689999999988777666
Q ss_pred HHHh
Q psy5757 73 NILH 76 (139)
Q Consensus 73 ~~~~ 76 (139)
+++.
T Consensus 128 ~L~~ 131 (370)
T COG1565 128 TLKA 131 (370)
T ss_pred HHhc
Confidence 6655
No 291
>KOG0024|consensus
Probab=94.16 E-value=0.35 Score=36.76 Aligned_cols=66 Identities=24% Similarity=0.314 Sum_probs=47.6
Q ss_pred cccccChHHHHHHHHHhcccCCCCCeEEEEccc-CChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh
Q psy5757 7 GAAIGGISAILTYLSIIQPHLNENSKVLEIGSG-SGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH 76 (139)
Q Consensus 7 ~~~~~~~~~~~~~~~~l~~~~~~~~~iLdiG~G-~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~ 76 (139)
|+.+.+.+.--+...+- .++.+.++|-+|+| .|-.+...++.++ -.+|+..|++++.++.|++ +..
T Consensus 149 GAl~ePLsV~~HAcr~~--~vk~Gs~vLV~GAGPIGl~t~l~Aka~G-A~~VVi~d~~~~Rle~Ak~-~Ga 215 (354)
T KOG0024|consen 149 GALIEPLSVGVHACRRA--GVKKGSKVLVLGAGPIGLLTGLVAKAMG-ASDVVITDLVANRLELAKK-FGA 215 (354)
T ss_pred cccccchhhhhhhhhhc--CcccCCeEEEECCcHHHHHHHHHHHHcC-CCcEEEeecCHHHHHHHHH-hCC
Confidence 44444444333333333 27889999999999 5777777888886 4599999999999999998 544
No 292
>KOG2078|consensus
Probab=93.91 E-value=0.072 Score=41.75 Aligned_cols=72 Identities=11% Similarity=0.069 Sum_probs=56.2
Q ss_pred HHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchh
Q psy5757 19 YLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIK 96 (139)
Q Consensus 19 ~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~ 96 (139)
..+.+...+++|..|.|+.||-|-+...++... +.|++.|.+++++++.+.+++.+- +...++.+...|+.+
T Consensus 239 Eherlsg~fk~gevv~D~FaGvGPfa~Pa~kK~---crV~aNDLNpesik~Lk~ni~lNk---v~~~~iei~Nmda~~ 310 (495)
T KOG2078|consen 239 EHERLSGLFKPGEVVCDVFAGVGPFALPAAKKG---CRVYANDLNPESIKWLKANIKLNK---VDPSAIEIFNMDAKD 310 (495)
T ss_pred HHHHHhhccCCcchhhhhhcCcCccccchhhcC---cEEEecCCCHHHHHHHHHhccccc---cchhheeeecccHHH
Confidence 344454457899999999999999999999987 399999999999999999998722 222336666666554
No 293
>PRK10458 DNA cytosine methylase; Provisional
Probab=93.82 E-value=0.31 Score=38.91 Aligned_cols=43 Identities=14% Similarity=0.110 Sum_probs=34.7
Q ss_pred CCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHH
Q psy5757 30 NSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNI 74 (139)
Q Consensus 30 ~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~ 74 (139)
..+++|+.||-|+++..+-..... .+.++|+++.+.+.-+.++
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~--~v~a~Eid~~A~~TY~~N~ 130 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQ--CVFTSEWNKHAVRTYKANW 130 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCE--EEEEEechHHHHHHHHHHc
Confidence 458999999999999999776542 6789999988777666664
No 294
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=93.79 E-value=0.2 Score=33.30 Aligned_cols=39 Identities=23% Similarity=0.276 Sum_probs=26.5
Q ss_pred EEcccCC--hhHHHHHH-HcCCCceEEEEeCCHHHHHHHHHH
Q psy5757 35 EIGSGSG--YLTNMISE-LMNSTGQVIGIEHVPQLVNSSIQN 73 (139)
Q Consensus 35 diG~G~G--~~~~~l~~-~~~~~~~v~~~d~~~~~~~~a~~~ 73 (139)
|+|+..| ..+..++. ...+.++++++|.+|..++..+++
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence 8999999 66666553 344567999999999999999888
No 295
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=93.49 E-value=0.41 Score=35.86 Aligned_cols=83 Identities=11% Similarity=0.088 Sum_probs=46.8
Q ss_pred EcccCChhHHHHHHHcCC--CceEEEEeCCHHHHHHHHHHHHhhccccccCCcEE----EEEccchhhhHHHhhhccCCc
Q psy5757 36 IGSGSGYLTNMISELMNS--TGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIK----FVALGMIKRIETVELMMKFDR 109 (139)
Q Consensus 36 iG~G~G~~~~~l~~~~~~--~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~----~~~~d~~~~~~~~~~~~~~~~ 109 (139)
+..|+|+.+..+.+..-. ..+++.+|.++..+-..++.+.... ..+++. .+.+|+.+ .+.+..-...-.
T Consensus 3 VTGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~----~~~~v~~~~~~vigDvrd-~~~l~~~~~~~~ 77 (293)
T PF02719_consen 3 VTGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRF----PDPKVRFEIVPVIGDVRD-KERLNRIFEEYK 77 (293)
T ss_dssp EETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC------TTCEEEEE--CTSCCH-HHHHHHHTT--T
T ss_pred EEccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcc----cccCcccccCceeecccC-HHHHHHHHhhcC
Confidence 345789999988887621 1489999999999988888875311 123343 45889887 333322222336
Q ss_pred eeEEecCccccccc
Q psy5757 110 YDFLPHAPAESWMN 123 (139)
Q Consensus 110 ~D~vi~~~~~~~~~ 123 (139)
.|+|++..++.|++
T Consensus 78 pdiVfHaAA~KhVp 91 (293)
T PF02719_consen 78 PDIVFHAAALKHVP 91 (293)
T ss_dssp -SEEEE------HH
T ss_pred CCEEEEChhcCCCC
Confidence 89999999987765
No 296
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=93.28 E-value=0.35 Score=37.64 Aligned_cols=19 Identities=16% Similarity=0.249 Sum_probs=16.7
Q ss_pred cCCceeEEecCcccccccc
Q psy5757 106 KFDRYDFLPHAPAESWMNI 124 (139)
Q Consensus 106 ~~~~~D~vi~~~~~~~~~~ 124 (139)
|..++++++|..++||+..
T Consensus 159 P~~Slh~~~Ss~slHWLS~ 177 (386)
T PLN02668 159 PARSIDVFHSAFSLHWLSQ 177 (386)
T ss_pred CCCceEEEEeeccceeccc
Confidence 5678999999999999875
No 297
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=93.26 E-value=0.3 Score=35.97 Aligned_cols=38 Identities=26% Similarity=0.506 Sum_probs=31.4
Q ss_pred CCCCCeEEEEcccCChhHHHHHHHcC----CCceEEEEeCCH
Q psy5757 27 LNENSKVLEIGSGSGYLTNMISELMN----STGQVIGIEHVP 64 (139)
Q Consensus 27 ~~~~~~iLdiG~G~G~~~~~l~~~~~----~~~~v~~~d~~~ 64 (139)
+.++..++|+|||.|.++.+++.... +...++.+|-..
T Consensus 16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~ 57 (259)
T PF05206_consen 16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRAS 57 (259)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCc
Confidence 46777999999999999999999883 245888999754
No 298
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=93.17 E-value=0.57 Score=34.53 Aligned_cols=56 Identities=23% Similarity=0.245 Sum_probs=45.6
Q ss_pred HHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh
Q psy5757 18 TYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH 76 (139)
Q Consensus 18 ~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~ 76 (139)
.+...+...-.++..|+|.-+|+|.++........ ..+++|++++.++.+.+++..
T Consensus 211 l~~r~i~~~s~~~diVlDpf~GsGtt~~aa~~~~r---~~ig~e~~~~y~~~~~~r~~~ 266 (302)
T COG0863 211 LIERLIRDYSFPGDIVLDPFAGSGTTGIAAKNLGR---RFIGIEINPEYVEVALKRLQE 266 (302)
T ss_pred HHHHHHHhcCCCCCEEeecCCCCChHHHHHHHcCC---ceEEEecCHHHHHHHHHHHHh
Confidence 33333333347889999999999998888877765 899999999999999999886
No 299
>KOG1562|consensus
Probab=93.17 E-value=0.4 Score=36.06 Aligned_cols=85 Identities=18% Similarity=0.201 Sum_probs=65.1
Q ss_pred CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757 27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMM 105 (139)
Q Consensus 27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 105 (139)
..+.+.++-+|-|.|...+..+++- .-.++.-+|++...++..++.+.. ... +..+++.+..||....++++
T Consensus 119 ~~npkkvlVVgggDggvlrevikH~-~ve~i~~~eiD~~Vie~sk~y~p~la~g--y~~~~v~l~iGDG~~fl~~~---- 191 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKHK-SVENILLCEIDENVIESSKQYLPTLACG--YEGKKVKLLIGDGFLFLEDL---- 191 (337)
T ss_pred CCCCCeEEEEecCCccceeeeeccc-cccceeeehhhHHHHHHHHHHhHHHhcc--cCCCceEEEeccHHHHHHHh----
Confidence 3556789999999999999999983 445889999999999988888765 211 45678999999976644432
Q ss_pred cCCceeEEecCcc
Q psy5757 106 KFDRYDFLPHAPA 118 (139)
Q Consensus 106 ~~~~~D~vi~~~~ 118 (139)
+.++||+|+...+
T Consensus 192 ~~~~~dVii~dss 204 (337)
T KOG1562|consen 192 KENPFDVIITDSS 204 (337)
T ss_pred ccCCceEEEEecC
Confidence 3567999987764
No 300
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=93.14 E-value=0.43 Score=35.34 Aligned_cols=43 Identities=30% Similarity=0.224 Sum_probs=36.1
Q ss_pred CCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHH
Q psy5757 29 ENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNI 74 (139)
Q Consensus 29 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~ 74 (139)
...+||-.|||.|.++..++.+.- .+.|.|.|-.|+-...-.+
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G~---~~~gnE~S~~Mll~s~fiL 98 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLGY---AVQGNEFSYFMLLASNFIL 98 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhccc---eEEEEEchHHHHHHHHHHH
Confidence 346899999999999999999975 8999999998876555443
No 301
>KOG2920|consensus
Probab=92.80 E-value=0.19 Score=37.36 Aligned_cols=50 Identities=14% Similarity=0.046 Sum_probs=36.9
Q ss_pred HHHHHHHh-cccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHH
Q psy5757 16 ILTYLSII-QPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLV 67 (139)
Q Consensus 16 ~~~~~~~l-~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~ 67 (139)
...+.+.+ ......+++|||+|||+|-.+......... .+...|.+...+
T Consensus 102 ~~~l~~e~~~~~~~~~k~vLELgCg~~Lp~i~~~~~~~~--~~~fqD~na~vl 152 (282)
T KOG2920|consen 102 LPYLKEEIGAQMSFSGKRVLELGCGAALPGIFAFVKGAV--SVHFQDFNAEVL 152 (282)
T ss_pred HHHHHHHhhhheEecCceeEecCCcccccchhhhhhccc--eeeeEecchhhe
Confidence 44444444 334578899999999999999888887742 788888886665
No 302
>KOG2912|consensus
Probab=92.71 E-value=0.54 Score=35.80 Aligned_cols=82 Identities=18% Similarity=0.122 Sum_probs=51.0
Q ss_pred EEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhH-HHhhhccCCcee
Q psy5757 34 LEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIE-TVELMMKFDRYD 111 (139)
Q Consensus 34 LdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~-~~~~~~~~~~~D 111 (139)
+|||+|.-..--.+-.+.. .=..+++|++.-....|..+... ++ .+.+.+++.+..+..- +.....+...||
T Consensus 107 iDIgtgasci~~llg~rq~-n~~f~~teidd~s~~~a~snV~qn~l-----ss~ikvV~~~~~ktll~d~~~~~~e~~yd 180 (419)
T KOG2912|consen 107 IDIGTGASCIYPLLGARQN-NWYFLATEIDDMSFNYAKSNVEQNNL-----SSLIKVVKVEPQKTLLMDALKEESEIIYD 180 (419)
T ss_pred eeccCchhhhHHhhhchhc-cceeeeeeccccccchhhcccccccc-----ccceeeEEecchhhcchhhhccCccceee
Confidence 6887765443333322221 22678999999999999999887 65 5677777765433221 111111234699
Q ss_pred EEecCccccc
Q psy5757 112 FLPHAPAESW 121 (139)
Q Consensus 112 ~vi~~~~~~~ 121 (139)
.+-|||+|..
T Consensus 181 FcMcNPPFfe 190 (419)
T KOG2912|consen 181 FCMCNPPFFE 190 (419)
T ss_pred EEecCCchhh
Confidence 9999999643
No 303
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=92.62 E-value=2.1 Score=33.55 Aligned_cols=90 Identities=14% Similarity=0.100 Sum_probs=54.3
Q ss_pred HHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEc
Q psy5757 14 SAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNS-TGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVAL 92 (139)
Q Consensus 14 ~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~-~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~ 92 (139)
.....+...+.+.....++++-+|+ |..+..+++.+.. ...++.+|.+++.++.+++.. .++.++.+
T Consensus 215 ~~l~~~~~~~~~~~~~~~~iiIiG~--G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~----------~~~~~i~g 282 (453)
T PRK09496 215 EHIRAVMSEFGRLEKPVKRVMIVGG--GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEEL----------PNTLVLHG 282 (453)
T ss_pred HHHHHHHHHhCccCCCCCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC----------CCCeEEEC
Confidence 3344555555433344567877666 7777777776632 348999999998887766542 34567788
Q ss_pred cchhhhHHHhhhccCCceeEEecCc
Q psy5757 93 GMIKRIETVELMMKFDRYDFLPHAP 117 (139)
Q Consensus 93 d~~~~~~~~~~~~~~~~~D~vi~~~ 117 (139)
|..+ ...+ ..+..+.+|.+++..
T Consensus 283 d~~~-~~~L-~~~~~~~a~~vi~~~ 305 (453)
T PRK09496 283 DGTD-QELL-EEEGIDEADAFIALT 305 (453)
T ss_pred CCCC-HHHH-HhcCCccCCEEEECC
Confidence 8765 2222 123345567766543
No 304
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=92.61 E-value=0.19 Score=36.36 Aligned_cols=52 Identities=17% Similarity=0.105 Sum_probs=33.9
Q ss_pred HHHhcccCC--CCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHH
Q psy5757 20 LSIIQPHLN--ENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNI 74 (139)
Q Consensus 20 ~~~l~~~~~--~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~ 74 (139)
+.+|.+.++ +..+++|+-||+|..+..+..... +++.-|+++..+...+..+
T Consensus 9 ~~~I~~~ip~~~~~~~vepF~G~g~V~~~~~~~~~---~vi~ND~~~~l~~~~~~~l 62 (260)
T PF02086_consen 9 AKWIIELIPKNKHKTYVEPFAGGGSVFLNLKQPGK---RVIINDINPDLINFWKAVL 62 (260)
T ss_dssp HHHHHHHS-S-S-SEEEETT-TTSHHHHCC---SS---EEEEEES-HHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCEEEEEecchhHHHHHhccccc---ceeeeechHHHHHHHHHHH
Confidence 334433344 678999999999999998877544 8999999988777666443
No 305
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=92.46 E-value=0.48 Score=35.38 Aligned_cols=79 Identities=8% Similarity=0.108 Sum_probs=57.3
Q ss_pred CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757 28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMK 106 (139)
Q Consensus 28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 106 (139)
..|+.|+-+| ..--++.+++...-|+ ++..+|+++..++.-.+..+. +. .|++.+.-|..+.+++- -
T Consensus 151 L~gK~I~vvG-DDDLtsia~aLt~mpk-~iaVvDIDERli~fi~k~aee~g~------~~ie~~~~Dlr~plpe~----~ 218 (354)
T COG1568 151 LEGKEIFVVG-DDDLTSIALALTGMPK-RIAVVDIDERLIKFIEKVAEELGY------NNIEAFVFDLRNPLPED----L 218 (354)
T ss_pred cCCCeEEEEc-CchhhHHHHHhcCCCc-eEEEEechHHHHHHHHHHHHHhCc------cchhheeehhcccChHH----H
Confidence 3567899888 4445555555543233 899999999999999999888 54 78888888876654421 1
Q ss_pred CCceeEEecCcc
Q psy5757 107 FDRYDFLPHAPA 118 (139)
Q Consensus 107 ~~~~D~vi~~~~ 118 (139)
..+||+.+..|+
T Consensus 219 ~~kFDvfiTDPp 230 (354)
T COG1568 219 KRKFDVFITDPP 230 (354)
T ss_pred HhhCCeeecCch
Confidence 247999999887
No 306
>KOG1098|consensus
Probab=91.05 E-value=0.27 Score=40.38 Aligned_cols=39 Identities=23% Similarity=0.415 Sum_probs=35.1
Q ss_pred cCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCH
Q psy5757 26 HLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVP 64 (139)
Q Consensus 26 ~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~ 64 (139)
++.++..+||+||..|++....++.++..+-|+|+|+-|
T Consensus 41 fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p 79 (780)
T KOG1098|consen 41 FLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP 79 (780)
T ss_pred cccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeee
Confidence 457888999999999999999999998888999999865
No 307
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=90.99 E-value=0.78 Score=35.11 Aligned_cols=45 Identities=18% Similarity=0.262 Sum_probs=37.7
Q ss_pred CCCCCeEEEEccc-CChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHH
Q psy5757 27 LNENSKVLEIGSG-SGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQN 73 (139)
Q Consensus 27 ~~~~~~iLdiG~G-~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~ 73 (139)
++++++|+-.|+| .|..+..+++... ++|+++|.+++..+.|++.
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~g--a~Via~~~~~~K~e~a~~l 209 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAMG--AEVIAITRSEEKLELAKKL 209 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcC--CeEEEEeCChHHHHHHHHh
Confidence 6789999888877 5678888888775 5999999999999888875
No 308
>KOG2782|consensus
Probab=90.80 E-value=0.4 Score=34.64 Aligned_cols=57 Identities=14% Similarity=0.075 Sum_probs=46.6
Q ss_pred HHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHH
Q psy5757 16 ILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNIL 75 (139)
Q Consensus 16 ~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~ 75 (139)
....++.+. ..++...+|..-|.|+.+..+.+.- ++.++++.|-+|.+.+.|+....
T Consensus 32 ~devl~~ls--pv~g~sf~DmTfGagGHt~~ilqk~-se~k~yalDrDP~A~~La~~~s~ 88 (303)
T KOG2782|consen 32 LDEVLDILS--PVRGRSFVDMTFGAGGHTSSILQKH-SELKNYALDRDPVARKLAHFHSD 88 (303)
T ss_pred hhhHHHHcC--CCCCceEEEEeccCCcchHHHHHhC-cHhhhhhhccChHHHHHHHHhhH
Confidence 445566665 3678899999999999999999988 57899999999988888876653
No 309
>PRK07326 short chain dehydrogenase; Provisional
Probab=90.55 E-value=4.1 Score=28.61 Aligned_cols=82 Identities=15% Similarity=0.125 Sum_probs=48.9
Q ss_pred CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--
Q psy5757 29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL-- 103 (139)
Q Consensus 29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~-- 103 (139)
.++.+|-.| |+|.++..+++.+. ...+|++++.++.......+.+.. ..+++++.+|+.+. +.....
T Consensus 5 ~~~~ilItG-atg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~-------~~~~~~~~~D~~~~~~~~~~~~~~ 76 (237)
T PRK07326 5 KGKVALITG-GSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNN-------KGNVLGLAADVRDEADVQRAVDAI 76 (237)
T ss_pred CCCEEEEEC-CCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhc-------cCcEEEEEccCCCHHHHHHHHHHH
Confidence 356788877 47777777776552 234899999887665555444432 14577788887651 111111
Q ss_pred hccCCceeEEecCcc
Q psy5757 104 MMKFDRYDFLPHAPA 118 (139)
Q Consensus 104 ~~~~~~~D~vi~~~~ 118 (139)
......+|+++.+..
T Consensus 77 ~~~~~~~d~vi~~ag 91 (237)
T PRK07326 77 VAAFGGLDVLIANAG 91 (237)
T ss_pred HHHcCCCCEEEECCC
Confidence 112346898887754
No 310
>PRK07904 short chain dehydrogenase; Provisional
Probab=90.37 E-value=3.1 Score=29.96 Aligned_cols=86 Identities=9% Similarity=0.093 Sum_probs=49.7
Q ss_pred CCCCCeEEEEcccCChhHHHHHHHcCCC--ceEEEEeCCHHH-HHHHHHHHHhhccccccCCcEEEEEccchhh--hHHH
Q psy5757 27 LNENSKVLEIGSGSGYLTNMISELMNST--GQVIGIEHVPQL-VNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETV 101 (139)
Q Consensus 27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~--~~v~~~d~~~~~-~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~ 101 (139)
.-.++++|-.|+ +|..+..+++.+-.+ .+|+.++-+++. ++.+.+.++. ....+++++..|+.+. ..+.
T Consensus 5 ~~~~~~vlItGa-s~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~-----~~~~~v~~~~~D~~~~~~~~~~ 78 (253)
T PRK07904 5 VGNPQTILLLGG-TSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKA-----AGASSVEVIDFDALDTDSHPKV 78 (253)
T ss_pred cCCCcEEEEEcC-CcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHh-----cCCCceEEEEecCCChHHHHHH
Confidence 345667888776 566777777664222 488888877654 5555444443 1114688888887651 1111
Q ss_pred -hhhccCCceeEEecCcc
Q psy5757 102 -ELMMKFDRYDFLPHAPA 118 (139)
Q Consensus 102 -~~~~~~~~~D~vi~~~~ 118 (139)
..-...+.+|+++.+..
T Consensus 79 ~~~~~~~g~id~li~~ag 96 (253)
T PRK07904 79 IDAAFAGGDVDVAIVAFG 96 (253)
T ss_pred HHHHHhcCCCCEEEEeee
Confidence 11111246898887654
No 311
>PRK06125 short chain dehydrogenase; Provisional
Probab=90.32 E-value=4.8 Score=28.81 Aligned_cols=83 Identities=12% Similarity=0.123 Sum_probs=51.1
Q ss_pred CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhhhc
Q psy5757 29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVELMM 105 (139)
Q Consensus 29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~~ 105 (139)
.++.+|-.|+ +|..+..+++.+. ..++|+.++.+++..+.+.+.+.... ..++.++..|+.+. +..+..
T Consensus 6 ~~k~vlItG~-~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-----~~~~~~~~~D~~~~~~~~~~~~-- 77 (259)
T PRK06125 6 AGKRVLITGA-SKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAH-----GVDVAVHALDLSSPEAREQLAA-- 77 (259)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhc-----CCceEEEEecCCCHHHHHHHHH--
Confidence 4577887775 5556666665552 23489999988877766655554311 14677788887651 222211
Q ss_pred cCCceeEEecCccc
Q psy5757 106 KFDRYDFLPHAPAE 119 (139)
Q Consensus 106 ~~~~~D~vi~~~~~ 119 (139)
..+++|+++.+...
T Consensus 78 ~~g~id~lv~~ag~ 91 (259)
T PRK06125 78 EAGDIDILVNNAGA 91 (259)
T ss_pred HhCCCCEEEECCCC
Confidence 23578999988753
No 312
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=90.25 E-value=2.9 Score=31.93 Aligned_cols=47 Identities=19% Similarity=0.340 Sum_probs=37.6
Q ss_pred CCCCeEEEEccc-CChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHH
Q psy5757 28 NENSKVLEIGSG-SGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNIL 75 (139)
Q Consensus 28 ~~~~~iLdiG~G-~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~ 75 (139)
+++.+++-+||| -|.++..+++..+ .++++.+|.+++.++.|++...
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~~~G-a~~Viv~d~~~~Rl~~A~~~~g 214 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAKLLG-ASVVIVVDRSPERLELAKEAGG 214 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CceEEEeCCCHHHHHHHHHhCC
Confidence 444589999999 5667777788775 4599999999999999988543
No 313
>PRK07454 short chain dehydrogenase; Provisional
Probab=90.23 E-value=4.7 Score=28.46 Aligned_cols=84 Identities=8% Similarity=0.069 Sum_probs=50.9
Q ss_pred CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHh---h-
Q psy5757 29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVE---L- 103 (139)
Q Consensus 29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~---~- 103 (139)
+.+++|-.| |+|.++..+++.+- ...+|+.++.++...+...+.... . ..++.++..|+.+ .+.+. .
T Consensus 5 ~~k~vlItG-~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-----~-~~~~~~~~~D~~~-~~~~~~~~~~ 76 (241)
T PRK07454 5 SMPRALITG-ASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRS-----T-GVKAAAYSIDLSN-PEAIAPGIAE 76 (241)
T ss_pred CCCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-----C-CCcEEEEEccCCC-HHHHHHHHHH
Confidence 345677776 57777777777662 234899999887655554444332 0 1467788888775 22211 1
Q ss_pred -hccCCceeEEecCcccc
Q psy5757 104 -MMKFDRYDFLPHAPAES 120 (139)
Q Consensus 104 -~~~~~~~D~vi~~~~~~ 120 (139)
......+|+++.+....
T Consensus 77 ~~~~~~~id~lv~~ag~~ 94 (241)
T PRK07454 77 LLEQFGCPDVLINNAGMA 94 (241)
T ss_pred HHHHcCCCCEEEECCCcc
Confidence 11234689999887643
No 314
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=90.17 E-value=3.2 Score=34.03 Aligned_cols=88 Identities=16% Similarity=0.165 Sum_probs=61.5
Q ss_pred CCCeEEEEcccCChhHHHHHHHc---CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757 29 ENSKVLEIGSGSGYLTNMISELM---NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMM 105 (139)
Q Consensus 29 ~~~~iLdiG~G~G~~~~~l~~~~---~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 105 (139)
.+++||- ..|+|+.+..+.+.. +| .+++-+|.++..+..-.+.+... +...++.+..+|+.+ ...+..-.
T Consensus 249 ~gK~vLV-TGagGSiGsel~~qil~~~p-~~i~l~~~~E~~~~~i~~el~~~----~~~~~~~~~igdVrD-~~~~~~~~ 321 (588)
T COG1086 249 TGKTVLV-TGGGGSIGSELCRQILKFNP-KEIILFSRDEYKLYLIDMELREK----FPELKLRFYIGDVRD-RDRVERAM 321 (588)
T ss_pred CCCEEEE-eCCCCcHHHHHHHHHHhcCC-CEEEEecCchHHHHHHHHHHHhh----CCCcceEEEeccccc-HHHHHHHH
Confidence 4566765 457788777776655 23 38999999998888877777652 113678899999887 33333333
Q ss_pred cCCceeEEecCccccccc
Q psy5757 106 KFDRYDFLPHAPAESWMN 123 (139)
Q Consensus 106 ~~~~~D~vi~~~~~~~~~ 123 (139)
..-+.|+|++..++.|++
T Consensus 322 ~~~kvd~VfHAAA~KHVP 339 (588)
T COG1086 322 EGHKVDIVFHAAALKHVP 339 (588)
T ss_pred hcCCCceEEEhhhhccCc
Confidence 334689999999988876
No 315
>PRK08267 short chain dehydrogenase; Provisional
Probab=90.14 E-value=3.3 Score=29.63 Aligned_cols=79 Identities=13% Similarity=0.038 Sum_probs=46.9
Q ss_pred eEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhhhc---
Q psy5757 32 KVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVELMM--- 105 (139)
Q Consensus 32 ~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~~--- 105 (139)
++|-.|+ +|..+..+++.+. ...+|+.++.+++.++...+.... .+++++..|+.+. +.++....
T Consensus 3 ~vlItGa-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~--------~~~~~~~~D~~~~~~v~~~~~~~~~~ 73 (260)
T PRK08267 3 SIFITGA-ASGIGRATALLFAAEGWRVGAYDINEAGLAALAAELGA--------GNAWTGALDVTDRAAWDAALADFAAA 73 (260)
T ss_pred EEEEeCC-CchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC--------CceEEEEecCCCHHHHHHHHHHHHHH
Confidence 4666664 4666666666542 234888998887766655443322 4678888888762 12111111
Q ss_pred cCCceeEEecCccc
Q psy5757 106 KFDRYDFLPHAPAE 119 (139)
Q Consensus 106 ~~~~~D~vi~~~~~ 119 (139)
..+++|+++.+...
T Consensus 74 ~~~~id~vi~~ag~ 87 (260)
T PRK08267 74 TGGRLDVLFNNAGI 87 (260)
T ss_pred cCCCCCEEEECCCC
Confidence 14568999988753
No 316
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=89.92 E-value=0.58 Score=38.79 Aligned_cols=103 Identities=15% Similarity=0.098 Sum_probs=57.9
Q ss_pred CeEEEEcccCChhHHHHHHHc------CC-----CceEEEEeCCH---HHHHHHH-----------HHHHh------hc-
Q psy5757 31 SKVLEIGSGSGYLTNMISELM------NS-----TGQVIGIEHVP---QLVNSSI-----------QNILH------SN- 78 (139)
Q Consensus 31 ~~iLdiG~G~G~~~~~l~~~~------~~-----~~~v~~~d~~~---~~~~~a~-----------~~~~~------~~- 78 (139)
-+|+|+|-|+|.......+.+ .+ +.+++++|..| +.+..+. ..... ++
T Consensus 59 ~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~ 138 (662)
T PRK01747 59 FVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGCH 138 (662)
T ss_pred EEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCce
Confidence 589999999999887777655 12 35889999754 2222221 11111 00
Q ss_pred cccccCC--cEEEEEccchhhhHHHhhhccCCceeEEecCcc------ccccccceeeeeeeccCCCC
Q psy5757 79 ARLLTDG--HIKFVALGMIKRIETVELMMKFDRYDFLPHAPA------ESWMNIPVCINYTATMPEGS 138 (139)
Q Consensus 79 ~~~~~~~--~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~------~~~~~~p~~~~~~~~~p~g~ 138 (139)
+..+... ++++..+|+.+.+.++. ..+|+++...- -.|-.+.....++...|+|.
T Consensus 139 ~~~~~~~~~~l~l~~gd~~~~~~~~~-----~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~ 201 (662)
T PRK01747 139 RLLFDDGRVTLDLWFGDANELLPQLD-----ARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGAT 201 (662)
T ss_pred EEEecCCcEEEEEEecCHHHHHHhcc-----ccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCE
Confidence 0011112 45677799776555432 45899987642 23444445555666666653
No 317
>PRK07814 short chain dehydrogenase; Provisional
Probab=89.64 E-value=5.8 Score=28.53 Aligned_cols=83 Identities=12% Similarity=0.139 Sum_probs=50.3
Q ss_pred CCCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhhh-
Q psy5757 29 ENSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVELM- 104 (139)
Q Consensus 29 ~~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~- 104 (139)
+++.+|-.| |+|..+..+++.+ ....+|+.++.+++..+...+.+... ..+++++..|+.+. +.++...
T Consensus 9 ~~~~vlItG-asggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~------~~~~~~~~~D~~~~~~~~~~~~~~ 81 (263)
T PRK07814 9 DDQVAVVTG-AGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAA------GRRAHVVAADLAHPEATAGLAGQA 81 (263)
T ss_pred CCCEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCcEEEEEccCCCHHHHHHHHHHH
Confidence 467787777 4666777777655 22458999998877666555544331 13577777887652 1111111
Q ss_pred -ccCCceeEEecCcc
Q psy5757 105 -MKFDRYDFLPHAPA 118 (139)
Q Consensus 105 -~~~~~~D~vi~~~~ 118 (139)
...+++|+++.+..
T Consensus 82 ~~~~~~id~vi~~Ag 96 (263)
T PRK07814 82 VEAFGRLDIVVNNVG 96 (263)
T ss_pred HHHcCCCCEEEECCC
Confidence 12346899998764
No 318
>KOG2360|consensus
Probab=89.58 E-value=0.8 Score=35.59 Aligned_cols=81 Identities=14% Similarity=0.225 Sum_probs=60.5
Q ss_pred CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757 28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMK 106 (139)
Q Consensus 28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 106 (139)
.++.+|+|..|-.|.-+..++.-+...++++++|.+..-.+..+..+.. +. ..++...+|+... . ....
T Consensus 212 ~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~------~~~~~~~~df~~t-~---~~~~ 281 (413)
T KOG2360|consen 212 RPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGV------SIVESVEGDFLNT-A---TPEK 281 (413)
T ss_pred CCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCC------CccccccccccCC-C---Cccc
Confidence 5678999999999999999988887788999999999888888777776 43 6677778886552 1 1112
Q ss_pred CCceeEEecCcc
Q psy5757 107 FDRYDFLPHAPA 118 (139)
Q Consensus 107 ~~~~D~vi~~~~ 118 (139)
+..+-.++..|+
T Consensus 282 ~~~v~~iL~Dps 293 (413)
T KOG2360|consen 282 FRDVTYILVDPS 293 (413)
T ss_pred ccceeEEEeCCC
Confidence 344666666665
No 319
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=89.56 E-value=5.5 Score=28.18 Aligned_cols=80 Identities=11% Similarity=0.149 Sum_probs=48.2
Q ss_pred CeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHH---h--hh
Q psy5757 31 SKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETV---E--LM 104 (139)
Q Consensus 31 ~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~---~--~~ 104 (139)
+++|-.| ++|.++..+++.+- ...+|+.++.++...+.....+... ..++.++..|+.+ .+.+ . ..
T Consensus 2 ~~vlItG-a~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~~-~~~~~~~~~~~~ 73 (255)
T TIGR01963 2 KTALVTG-AASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDA------GGSVIYLVADVTK-EDEIADMIAAAA 73 (255)
T ss_pred CEEEEcC-CcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCceEEEECCCCC-HHHHHHHHHHHH
Confidence 3455555 67888888877652 2347999998876665555444331 1467788888776 2211 0 11
Q ss_pred ccCCceeEEecCcc
Q psy5757 105 MKFDRYDFLPHAPA 118 (139)
Q Consensus 105 ~~~~~~D~vi~~~~ 118 (139)
.....+|+++++..
T Consensus 74 ~~~~~~d~vi~~a~ 87 (255)
T TIGR01963 74 AEFGGLDILVNNAG 87 (255)
T ss_pred HhcCCCCEEEECCC
Confidence 12345899988774
No 320
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=89.41 E-value=6.1 Score=28.22 Aligned_cols=84 Identities=15% Similarity=0.178 Sum_probs=51.8
Q ss_pred CCCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHh---h
Q psy5757 28 NENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVE---L 103 (139)
Q Consensus 28 ~~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~---~ 103 (139)
.+++++|-.| |+|..+..+++.+- ...+|+.++-++..++...+.+... ..++.++..|+.+ .+.+. .
T Consensus 10 ~~~k~ilItG-a~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~------~~~~~~~~~Dl~d-~~~i~~~~~ 81 (259)
T PRK08213 10 LSGKTALVTG-GSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEAL------GIDALWIAADVAD-EADIERLAE 81 (259)
T ss_pred cCCCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc------CCeEEEEEccCCC-HHHHHHHHH
Confidence 3567788877 56777777777662 2348888888877666555544331 1357778888775 22221 1
Q ss_pred --hccCCceeEEecCccc
Q psy5757 104 --MMKFDRYDFLPHAPAE 119 (139)
Q Consensus 104 --~~~~~~~D~vi~~~~~ 119 (139)
......+|.++++...
T Consensus 82 ~~~~~~~~id~vi~~ag~ 99 (259)
T PRK08213 82 ETLERFGHVDILVNNAGA 99 (259)
T ss_pred HHHHHhCCCCEEEECCCC
Confidence 1112468999888753
No 321
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=89.05 E-value=0.87 Score=33.50 Aligned_cols=46 Identities=15% Similarity=0.140 Sum_probs=30.7
Q ss_pred CCCCeEEEEcccCChh-HHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh
Q psy5757 28 NENSKVLEIGSGSGYL-TNMISELMNSTGQVIGIEHVPQLVNSSIQNILH 76 (139)
Q Consensus 28 ~~~~~iLdiG~G~G~~-~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~ 76 (139)
.++.++||+|||.-.. ...+.+... +++..|..+.-.+..++.++.
T Consensus 55 ~~g~~llDiGsGPtiy~~lsa~~~f~---~I~l~dy~~~N~~el~kWl~~ 101 (256)
T PF01234_consen 55 VKGETLLDIGSGPTIYQLLSACEWFE---EIVLSDYSEQNREELEKWLRK 101 (256)
T ss_dssp S-EEEEEEES-TT--GGGTTGGGTEE---EEEEEESSHHHHHHHHHHHTT
T ss_pred cCCCEEEEeCCCcHHHhhhhHHHhhc---ceEEeeccHhhHHHHHHHHCC
Confidence 3567899999997543 444445554 899999998888777766644
No 322
>PRK05599 hypothetical protein; Provisional
Probab=89.05 E-value=6 Score=28.27 Aligned_cols=81 Identities=9% Similarity=0.074 Sum_probs=48.3
Q ss_pred eEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhh--hHHHhh--hcc
Q psy5757 32 KVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKR--IETVEL--MMK 106 (139)
Q Consensus 32 ~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~--~~~~~~--~~~ 106 (139)
.+|-.|++ ++.+..+++.+....+|+.++-+++.++.+.+.+.. + ..++.++..|+.+. +..+.. ...
T Consensus 2 ~vlItGas-~GIG~aia~~l~~g~~Vil~~r~~~~~~~~~~~l~~~~------~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 74 (246)
T PRK05599 2 SILILGGT-SDIAGEIATLLCHGEDVVLAARRPEAAQGLASDLRQRG------ATSVHVLSFDAQDLDTHRELVKQTQEL 74 (246)
T ss_pred eEEEEeCc-cHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcc------CCceEEEEcccCCHHHHHHHHHHHHHh
Confidence 45656654 556666666664455888888887777666555544 2 13466777777651 222111 112
Q ss_pred CCceeEEecCccc
Q psy5757 107 FDRYDFLPHAPAE 119 (139)
Q Consensus 107 ~~~~D~vi~~~~~ 119 (139)
.+.+|+++.|...
T Consensus 75 ~g~id~lv~nag~ 87 (246)
T PRK05599 75 AGEISLAVVAFGI 87 (246)
T ss_pred cCCCCEEEEecCc
Confidence 4578999987653
No 323
>PRK06949 short chain dehydrogenase; Provisional
Probab=89.01 E-value=6.5 Score=27.96 Aligned_cols=84 Identities=15% Similarity=0.150 Sum_probs=51.5
Q ss_pred CCCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh-
Q psy5757 28 NENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL- 103 (139)
Q Consensus 28 ~~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~- 103 (139)
..++.+|-.| |+|..+..+++.+. ...+|+.++.+++.++.....+... ..+++++..|+.+. +.+...
T Consensus 7 ~~~k~ilItG-asg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~------~~~~~~~~~D~~~~~~~~~~~~~ 79 (258)
T PRK06949 7 LEGKVALVTG-ASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAE------GGAAHVVSLDVTDYQSIKAAVAH 79 (258)
T ss_pred CCCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCcEEEEEecCCCHHHHHHHHHH
Confidence 3457788777 66777777777663 2347999998887766665554330 13577787787641 111111
Q ss_pred -hccCCceeEEecCcc
Q psy5757 104 -MMKFDRYDFLPHAPA 118 (139)
Q Consensus 104 -~~~~~~~D~vi~~~~ 118 (139)
....+.+|+++.+..
T Consensus 80 ~~~~~~~~d~li~~ag 95 (258)
T PRK06949 80 AETEAGTIDILVNNSG 95 (258)
T ss_pred HHHhcCCCCEEEECCC
Confidence 112346899988876
No 324
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=88.89 E-value=6.7 Score=27.96 Aligned_cols=84 Identities=12% Similarity=0.113 Sum_probs=51.8
Q ss_pred CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--
Q psy5757 29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL-- 103 (139)
Q Consensus 29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~-- 103 (139)
.++++|-.| |+|..+..+++.+- ...+|+..+-+++.++...+.+... -.++.++..|+.+. +..+..
T Consensus 9 ~~k~vlItG-a~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~------~~~~~~~~~D~~~~~~~~~~~~~~ 81 (255)
T PRK07523 9 TGRRALVTG-SSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQ------GLSAHALAFDVTDHDAVRAAIDAF 81 (255)
T ss_pred CCCEEEEEC-CcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc------CceEEEEEccCCCHHHHHHHHHHH
Confidence 467888777 57777777777652 2348899988877666555554430 13577777887651 222111
Q ss_pred hccCCceeEEecCccc
Q psy5757 104 MMKFDRYDFLPHAPAE 119 (139)
Q Consensus 104 ~~~~~~~D~vi~~~~~ 119 (139)
....+.+|++|++...
T Consensus 82 ~~~~~~~d~li~~ag~ 97 (255)
T PRK07523 82 EAEIGPIDILVNNAGM 97 (255)
T ss_pred HHhcCCCCEEEECCCC
Confidence 1123568999988763
No 325
>PRK07774 short chain dehydrogenase; Provisional
Probab=88.73 E-value=6.7 Score=27.75 Aligned_cols=84 Identities=13% Similarity=0.186 Sum_probs=49.5
Q ss_pred CCCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhh--HHHhh--
Q psy5757 29 ENSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRI--ETVEL-- 103 (139)
Q Consensus 29 ~~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~~~-- 103 (139)
.++++|-.| |+|..+..+++.+ ....+++.++-++...+...+.+... ..++.++..|..+.- ..+..
T Consensus 5 ~~k~vlItG-asg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~------~~~~~~~~~Dl~~~~~~~~~~~~~ 77 (250)
T PRK07774 5 DDKVAIVTG-AAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVAD------GGTAIAVQVDVSDPDSAKAMADAT 77 (250)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCcEEEEEcCCCCHHHHHHHHHHH
Confidence 456777666 6677777777755 22348999998876555554444330 135667778877521 11111
Q ss_pred hccCCceeEEecCccc
Q psy5757 104 MMKFDRYDFLPHAPAE 119 (139)
Q Consensus 104 ~~~~~~~D~vi~~~~~ 119 (139)
....+.+|++|++...
T Consensus 78 ~~~~~~id~vi~~ag~ 93 (250)
T PRK07774 78 VSAFGGIDYLVNNAAI 93 (250)
T ss_pred HHHhCCCCEEEECCCC
Confidence 1123468999988763
No 326
>KOG0821|consensus
Probab=88.72 E-value=0.9 Score=32.97 Aligned_cols=59 Identities=19% Similarity=0.247 Sum_probs=44.0
Q ss_pred CCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccch
Q psy5757 29 ENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMI 95 (139)
Q Consensus 29 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~ 95 (139)
....|.+||.|.|+.++.+.+..-. ++..+|+++..+.-.+...... ..+..+.++|++
T Consensus 50 ~~~~v~eIgPgpggitR~il~a~~~--RL~vVE~D~RFip~LQ~L~EAa------~~~~~IHh~D~L 108 (326)
T KOG0821|consen 50 TNAYVYEIGPGPGGITRSILNADVA--RLLVVEKDTRFIPGLQMLSEAA------PGKLRIHHGDVL 108 (326)
T ss_pred ccceeEEecCCCCchhHHHHhcchh--heeeeeeccccChHHHHHhhcC------CcceEEeccccc
Confidence 4568999999999999999988743 8889999987776665544331 245667777765
No 327
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=88.67 E-value=3.5 Score=29.61 Aligned_cols=72 Identities=15% Similarity=0.172 Sum_probs=42.0
Q ss_pred CeEEEEcccCChhHHHHHHHcCCC-ceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccCCc
Q psy5757 31 SKVLEIGSGSGYLTNMISELMNST-GQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKFDR 109 (139)
Q Consensus 31 ~~iLdiG~G~G~~~~~l~~~~~~~-~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~ 109 (139)
++++-+||| .++..+++.+... -.|+.+|.+++.++..... ....+.+++|..+ ..-+ .++..+.
T Consensus 1 m~iiIiG~G--~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~----------~~~~~~v~gd~t~-~~~L-~~agi~~ 66 (225)
T COG0569 1 MKIIIIGAG--RVGRSVARELSEEGHNVVLIDRDEERVEEFLAD----------ELDTHVVIGDATD-EDVL-EEAGIDD 66 (225)
T ss_pred CEEEEECCc--HHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhh----------hcceEEEEecCCC-HHHH-HhcCCCc
Confidence 345666665 4555555554322 2899999999877763321 1345677788776 2222 3444566
Q ss_pred eeEEecC
Q psy5757 110 YDFLPHA 116 (139)
Q Consensus 110 ~D~vi~~ 116 (139)
+|+++..
T Consensus 67 aD~vva~ 73 (225)
T COG0569 67 ADAVVAA 73 (225)
T ss_pred CCEEEEe
Confidence 7777544
No 328
>KOG3924|consensus
Probab=88.54 E-value=1.8 Score=33.79 Aligned_cols=88 Identities=13% Similarity=0.169 Sum_probs=54.9
Q ss_pred CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh--hcccccc--CCcEEEEEccchhhhHHHh
Q psy5757 27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH--SNARLLT--DGHIKFVALGMIKRIETVE 102 (139)
Q Consensus 27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~--~~~~~~~--~~~i~~~~~d~~~~~~~~~ 102 (139)
+.++....|+|+|-|.+...++...+.. .-+|+|+.+..-+.|..+... .++..++ ...+..+++++.+ .....
T Consensus 190 ~g~~D~F~DLGSGVGqlv~~~aa~a~~k-~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~-~~~v~ 267 (419)
T KOG3924|consen 190 LGPADVFMDLGSGVGQLVCFVAAYAGCK-KSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLD-PKRVT 267 (419)
T ss_pred cCCCCcccCCCcccchhhHHHHHhhccc-cccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCC-HHHHH
Confidence 5677889999999999999888877533 678999876655555444322 1111111 2347788888765 22111
Q ss_pred hhccCCceeEEecCcc
Q psy5757 103 LMMKFDRYDFLPHAPA 118 (139)
Q Consensus 103 ~~~~~~~~D~vi~~~~ 118 (139)
+- ....+++++|..
T Consensus 268 eI--~~eatvi~vNN~ 281 (419)
T KOG3924|consen 268 EI--QTEATVIFVNNV 281 (419)
T ss_pred HH--hhcceEEEEecc
Confidence 11 123688888875
No 329
>KOG2793|consensus
Probab=88.48 E-value=1.1 Score=32.86 Aligned_cols=42 Identities=26% Similarity=0.379 Sum_probs=28.7
Q ss_pred CCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHH
Q psy5757 29 ENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQN 73 (139)
Q Consensus 29 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~ 73 (139)
+...|||+|+|+|-.+..++.... +++...|... .....+.+
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~--~~v~ltD~~~-~~~~L~~~ 127 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLG--AEVVLTDLPK-VVENLKFN 127 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhc--ceeccCCchh-hHHHHHHh
Confidence 355799999999977777777553 3777777663 34444444
No 330
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=88.46 E-value=3.8 Score=30.74 Aligned_cols=80 Identities=16% Similarity=0.163 Sum_probs=47.1
Q ss_pred CCCeEEEEcccCChhHHHHHHHcCCC---ceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757 29 ENSKVLEIGSGSGYLTNMISELMNST---GQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMM 105 (139)
Q Consensus 29 ~~~~iLdiG~G~G~~~~~l~~~~~~~---~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 105 (139)
.++++|-.| |+|..+..+++.+-.. .+|++++.++.......+.+. ..+++++.+|+.+ ...+..-
T Consensus 3 ~~k~vLVTG-atG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~--------~~~~~~v~~Dl~d-~~~l~~~- 71 (324)
T TIGR03589 3 NNKSILITG-GTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFP--------APCLRFFIGDVRD-KERLTRA- 71 (324)
T ss_pred CCCEEEEeC-CCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHhC--------CCcEEEEEccCCC-HHHHHHH-
Confidence 356777655 5788888887765321 378888766443222221111 1468888999877 3333221
Q ss_pred cCCceeEEecCcccc
Q psy5757 106 KFDRYDFLPHAPAES 120 (139)
Q Consensus 106 ~~~~~D~vi~~~~~~ 120 (139)
.+.+|+||.+....
T Consensus 72 -~~~iD~Vih~Ag~~ 85 (324)
T TIGR03589 72 -LRGVDYVVHAAALK 85 (324)
T ss_pred -HhcCCEEEECcccC
Confidence 23489999877643
No 331
>PRK08339 short chain dehydrogenase; Provisional
Probab=88.37 E-value=6.8 Score=28.32 Aligned_cols=84 Identities=10% Similarity=0.152 Sum_probs=49.2
Q ss_pred CCCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhhh-
Q psy5757 29 ENSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVELM- 104 (139)
Q Consensus 29 ~~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~- 104 (139)
+++.+|-.|+++ ..+..+++.+ ....+|+.++.+++.++.+.+.+.... ..++.++..|+.+. +..+...
T Consensus 7 ~~k~~lItGas~-gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~i~~~~~~~ 80 (263)
T PRK08339 7 SGKLAFTTASSK-GIGFGVARVLARAGADVILLSRNEENLKKAREKIKSES-----NVDVSYIVADLTKREDLERTVKEL 80 (263)
T ss_pred CCCEEEEeCCCC-cHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc-----CCceEEEEecCCCHHHHHHHHHHH
Confidence 456777766554 4455555544 123489999988877766665554310 14677888887752 2221111
Q ss_pred ccCCceeEEecCcc
Q psy5757 105 MKFDRYDFLPHAPA 118 (139)
Q Consensus 105 ~~~~~~D~vi~~~~ 118 (139)
...+.+|+++.|..
T Consensus 81 ~~~g~iD~lv~nag 94 (263)
T PRK08339 81 KNIGEPDIFFFSTG 94 (263)
T ss_pred HhhCCCcEEEECCC
Confidence 12456899988765
No 332
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=88.35 E-value=1.9 Score=30.57 Aligned_cols=74 Identities=18% Similarity=0.227 Sum_probs=46.6
Q ss_pred cChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHc---CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcE
Q psy5757 11 GGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELM---NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHI 87 (139)
Q Consensus 11 ~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~---~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i 87 (139)
..++=+-.+.+.|- -.+...|+|+|+-.|+-+.+.|..+ +...+|+++|++-..++.+... .+.+
T Consensus 53 k~p~D~~~yQellw--~~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e----------~p~i 120 (237)
T COG3510 53 KSPSDMWNYQELLW--ELQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE----------VPDI 120 (237)
T ss_pred CCHHHHHHHHHHHH--hcCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc----------CCCe
Confidence 34443444555553 2444688999998887666665543 4346999999985554444332 2678
Q ss_pred EEEEccchh
Q psy5757 88 KFVALGMIK 96 (139)
Q Consensus 88 ~~~~~d~~~ 96 (139)
.++.++..+
T Consensus 121 ~f~egss~d 129 (237)
T COG3510 121 LFIEGSSTD 129 (237)
T ss_pred EEEeCCCCC
Confidence 888887665
No 333
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=88.24 E-value=1.8 Score=35.26 Aligned_cols=64 Identities=17% Similarity=0.150 Sum_probs=42.1
Q ss_pred ccCChhHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccCCceeEEec
Q psy5757 38 SGSGYLTNMISELMNS-TGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKFDRYDFLPH 115 (139)
Q Consensus 38 ~G~G~~~~~l~~~~~~-~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~ 115 (139)
||.|..+..+++.... .-.++.+|.+++.++.+++ .....+.+|..+ .+-+ .++.-++.|.++.
T Consensus 423 ~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~------------~g~~~i~GD~~~-~~~L-~~a~i~~a~~viv 487 (558)
T PRK10669 423 VGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRE------------RGIRAVLGNAAN-EEIM-QLAHLDCARWLLL 487 (558)
T ss_pred ECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH------------CCCeEEEcCCCC-HHHH-HhcCccccCEEEE
Confidence 6677788888887632 3489999999988877754 245678888776 2222 2334456775543
No 334
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=88.11 E-value=7.4 Score=27.87 Aligned_cols=80 Identities=10% Similarity=0.084 Sum_probs=47.9
Q ss_pred CeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--hc
Q psy5757 31 SKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL--MM 105 (139)
Q Consensus 31 ~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~--~~ 105 (139)
+++|-.|++ |..+..+++.+. ...+|+.++.++..++.+.+.+.. ..++.++..|+.+. +.++.. ..
T Consensus 1 m~vlItGas-~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~-------~~~~~~~~~Dv~d~~~~~~~~~~~~~ 72 (259)
T PRK08340 1 MNVLVTASS-RGIGFNVARELLKKGARVVISSRNEENLEKALKELKE-------YGEVYAVKADLSDKDDLKNLVKEAWE 72 (259)
T ss_pred CeEEEEcCC-cHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHh-------cCCceEEEcCCCCHHHHHHHHHHHHH
Confidence 356667754 556666666552 234889999888777666555543 13567777887651 222211 11
Q ss_pred cCCceeEEecCcc
Q psy5757 106 KFDRYDFLPHAPA 118 (139)
Q Consensus 106 ~~~~~D~vi~~~~ 118 (139)
..+.+|+++.|..
T Consensus 73 ~~g~id~li~naG 85 (259)
T PRK08340 73 LLGGIDALVWNAG 85 (259)
T ss_pred hcCCCCEEEECCC
Confidence 2457899988865
No 335
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=88.05 E-value=3.2 Score=30.76 Aligned_cols=63 Identities=17% Similarity=0.222 Sum_probs=28.8
Q ss_pred hhhhhcccccChH-H------HHHHHHHhcc---cCCCCCeEEEEcccCC----hhHHHHHHHcCCCceEEEEeCCH
Q psy5757 2 NLVKIGAAIGGIS-A------ILTYLSIIQP---HLNENSKVLEIGSGSG----YLTNMISELMNSTGQVIGIEHVP 64 (139)
Q Consensus 2 ~~~~~~~~~~~~~-~------~~~~~~~l~~---~~~~~~~iLdiG~G~G----~~~~~l~~~~~~~~~v~~~d~~~ 64 (139)
++..||+...-+. . ..++...+.. -++..++|+.+|+|+- --+.-|.++++.++.++-.|+.+
T Consensus 24 ~l~NYg~~~~lp~G~~~NV~KYtQLCqYln~~tlaVP~nMrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d 100 (299)
T PF06460_consen 24 DLPNYGAPIKLPPGIMMNVAKYTQLCQYLNKTTLAVPHNMRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRD 100 (299)
T ss_dssp S--S-S--TTS-TT--HHHHHHHHHHHHHTTS-----TT-EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS-
T ss_pred cccccCCCCCCCCcceeeHHHHHHHHHHhccccEeeccCcEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhh
Confidence 3556777665442 1 2244444432 1367899999999964 34555666666677778888875
No 336
>PRK06940 short chain dehydrogenase; Provisional
Probab=88.01 E-value=6.7 Score=28.60 Aligned_cols=80 Identities=11% Similarity=0.156 Sum_probs=49.0
Q ss_pred eEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhhh-ccCC
Q psy5757 32 KVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVELM-MKFD 108 (139)
Q Consensus 32 ~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~-~~~~ 108 (139)
.+|--|+ |..+..+++.+....+|+.++.+++.++.+.+.+... ..++.++..|+.+. +..+... ...+
T Consensus 4 ~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~------~~~~~~~~~Dv~d~~~i~~~~~~~~~~g 75 (275)
T PRK06940 4 VVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREA------GFDVSTQEVDVSSRESVKALAATAQTLG 75 (275)
T ss_pred EEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhc------CCeEEEEEeecCCHHHHHHHHHHHHhcC
Confidence 4444453 5788888888754568999998876665555444330 13567777787651 2222111 1245
Q ss_pred ceeEEecCccc
Q psy5757 109 RYDFLPHAPAE 119 (139)
Q Consensus 109 ~~D~vi~~~~~ 119 (139)
.+|+++.|...
T Consensus 76 ~id~li~nAG~ 86 (275)
T PRK06940 76 PVTGLVHTAGV 86 (275)
T ss_pred CCCEEEECCCc
Confidence 78999988763
No 337
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=87.94 E-value=4.4 Score=30.62 Aligned_cols=81 Identities=15% Similarity=0.098 Sum_probs=44.6
Q ss_pred CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccC
Q psy5757 29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKF 107 (139)
Q Consensus 29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 107 (139)
++++||-.| |+|..+..+++.+- ...+|++++.++.......+.+.. ..+++++.+|+.+ ...+..-...
T Consensus 3 ~~k~ilItG-atG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~-------~~~~~~~~~Dl~~-~~~~~~~~~~ 73 (349)
T TIGR02622 3 QGKKVLVTG-HTGFKGSWLSLWLLELGAEVYGYSLDPPTSPNLFELLNL-------AKKIEDHFGDIRD-AAKLRKAIAE 73 (349)
T ss_pred CCCEEEEEC-CCChhHHHHHHHHHHCCCEEEEEeCCCccchhHHHHHhh-------cCCceEEEccCCC-HHHHHHHHhh
Confidence 357777765 67777777777662 223788888765432222111111 1356777888765 2222111111
Q ss_pred CceeEEecCcc
Q psy5757 108 DRYDFLPHAPA 118 (139)
Q Consensus 108 ~~~D~vi~~~~ 118 (139)
..+|+|+....
T Consensus 74 ~~~d~vih~A~ 84 (349)
T TIGR02622 74 FKPEIVFHLAA 84 (349)
T ss_pred cCCCEEEECCc
Confidence 24688887765
No 338
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=87.83 E-value=5.8 Score=27.13 Aligned_cols=94 Identities=11% Similarity=0.044 Sum_probs=57.5
Q ss_pred cccccChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCc
Q psy5757 7 GAAIGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGH 86 (139)
Q Consensus 7 ~~~~~~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~ 86 (139)
.|..-+......+.+.+.+...++.+|+=+||=+-+. .+.+...+..+++-.|+|..... ++ .+
T Consensus 3 sQfwYs~~T~~~l~~~l~~~~~~~~~iaclstPsl~~--~l~~~~~~~~~~~Lle~D~RF~~-------------~~-~~ 66 (162)
T PF10237_consen 3 SQFWYSDETAEFLARELLDGALDDTRIACLSTPSLYE--ALKKESKPRIQSFLLEYDRRFEQ-------------FG-GD 66 (162)
T ss_pred cccccCHHHHHHHHHHHHHhcCCCCEEEEEeCcHHHH--HHHhhcCCCccEEEEeecchHHh-------------cC-Cc
Confidence 3455566667777777775456678998888754443 33332334558999999953222 11 23
Q ss_pred EEEEEccchhhhHHHhhhccCCceeEEecCccc
Q psy5757 87 IKFVALGMIKRIETVELMMKFDRYDFLPHAPAE 119 (139)
Q Consensus 87 i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~ 119 (139)
+++.-|..+ ..+++... ..++|+|+..|+|
T Consensus 67 -~F~fyD~~~-p~~~~~~l-~~~~d~vv~DPPF 96 (162)
T PF10237_consen 67 -EFVFYDYNE-PEELPEEL-KGKFDVVVIDPPF 96 (162)
T ss_pred -ceEECCCCC-hhhhhhhc-CCCceEEEECCCC
Confidence 466666554 23333232 3579999999997
No 339
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=87.43 E-value=8.1 Score=27.19 Aligned_cols=83 Identities=6% Similarity=0.025 Sum_probs=50.3
Q ss_pred CCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--h
Q psy5757 30 NSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL--M 104 (139)
Q Consensus 30 ~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~--~ 104 (139)
++.++-.| |+|.++..+++.+ ....+|+.++.++...+...+.+... ..++.++..|+.+. +..... .
T Consensus 7 ~~~vlVtG-~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~~~~ 79 (239)
T PRK07666 7 GKNALITG-AGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAY------GVKVVIATADVSDYEEVTAAIEQLK 79 (239)
T ss_pred CCEEEEEc-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHh------CCeEEEEECCCCCHHHHHHHHHHHH
Confidence 46677777 5778888877765 23458899998876655544444331 14677888887651 111111 1
Q ss_pred ccCCceeEEecCccc
Q psy5757 105 MKFDRYDFLPHAPAE 119 (139)
Q Consensus 105 ~~~~~~D~vi~~~~~ 119 (139)
.....+|+++++...
T Consensus 80 ~~~~~id~vi~~ag~ 94 (239)
T PRK07666 80 NELGSIDILINNAGI 94 (239)
T ss_pred HHcCCccEEEEcCcc
Confidence 123468999988653
No 340
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=87.23 E-value=2.3 Score=27.90 Aligned_cols=34 Identities=24% Similarity=0.354 Sum_probs=20.6
Q ss_pred CCCeEEEEcccCCh-hHHHHHHHcCCCceEEEEeCCHH
Q psy5757 29 ENSKVLEIGSGSGY-LTNMISELMNSTGQVIGIEHVPQ 65 (139)
Q Consensus 29 ~~~~iLdiG~G~G~-~~~~l~~~~~~~~~v~~~d~~~~ 65 (139)
...+++|+|-|.-. .+..|.++. . .|+++|+++.
T Consensus 13 ~~~kiVEVGiG~~~~vA~~L~~~G-~--dV~~tDi~~~ 47 (127)
T PF03686_consen 13 NYGKIVEVGIGFNPEVAKKLKERG-F--DVIATDINPR 47 (127)
T ss_dssp -SSEEEEET-TT--HHHHHHHHHS----EEEEE-SS-S
T ss_pred CCCcEEEECcCCCHHHHHHHHHcC-C--cEEEEECccc
Confidence 33499999999764 455555554 3 8999999986
No 341
>PRK05854 short chain dehydrogenase; Provisional
Probab=87.16 E-value=10 Score=28.23 Aligned_cols=85 Identities=11% Similarity=0.100 Sum_probs=50.3
Q ss_pred CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHH---Hhh-
Q psy5757 29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIET---VEL- 103 (139)
Q Consensus 29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~---~~~- 103 (139)
.++.++-.|++ ++.+..+++.+. ...+|+...-+++..+.+.+.+... ....++.++..|+.+ ..+ +..
T Consensus 13 ~gk~~lITGas-~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~----~~~~~v~~~~~Dl~d-~~sv~~~~~~ 86 (313)
T PRK05854 13 SGKRAVVTGAS-DGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTA----VPDAKLSLRALDLSS-LASVAALGEQ 86 (313)
T ss_pred CCCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHh----CCCCceEEEEecCCC-HHHHHHHHHH
Confidence 45677766654 555666665552 2348888888877666665555431 012467788888765 222 111
Q ss_pred -hccCCceeEEecCccc
Q psy5757 104 -MMKFDRYDFLPHAPAE 119 (139)
Q Consensus 104 -~~~~~~~D~vi~~~~~ 119 (139)
....+.+|++|.|...
T Consensus 87 ~~~~~~~iD~li~nAG~ 103 (313)
T PRK05854 87 LRAEGRPIHLLINNAGV 103 (313)
T ss_pred HHHhCCCccEEEECCcc
Confidence 1234579999998753
No 342
>PRK07890 short chain dehydrogenase; Provisional
Probab=87.13 E-value=8.7 Score=27.28 Aligned_cols=84 Identities=12% Similarity=0.083 Sum_probs=50.2
Q ss_pred CCCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHh--
Q psy5757 28 NENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVE-- 102 (139)
Q Consensus 28 ~~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~-- 102 (139)
..++++|-.|+ +|..+..+++.+- ...+|+.++.++...+.+.+.+... ..+++++..|+.+. +..+.
T Consensus 3 l~~k~vlItGa-~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~~ 75 (258)
T PRK07890 3 LKGKVVVVSGV-GPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDL------GRRALAVPTDITDEDQCANLVAL 75 (258)
T ss_pred cCCCEEEEECC-CCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHh------CCceEEEecCCCCHHHHHHHHHH
Confidence 34577887665 5566666666542 2348999998877666555554431 14577888887651 21111
Q ss_pred hhccCCceeEEecCcc
Q psy5757 103 LMMKFDRYDFLPHAPA 118 (139)
Q Consensus 103 ~~~~~~~~D~vi~~~~ 118 (139)
.....+.+|+++.+..
T Consensus 76 ~~~~~g~~d~vi~~ag 91 (258)
T PRK07890 76 ALERFGRVDALVNNAF 91 (258)
T ss_pred HHHHcCCccEEEECCc
Confidence 1112356899998875
No 343
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=87.00 E-value=8.3 Score=27.74 Aligned_cols=84 Identities=14% Similarity=0.053 Sum_probs=47.1
Q ss_pred CCCeEEEEcccC-ChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh-
Q psy5757 29 ENSKVLEIGSGS-GYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL- 103 (139)
Q Consensus 29 ~~~~iLdiG~G~-G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~- 103 (139)
+++.+|-.|+++ ++.+..+++.+- ...+|+..+.++...+.+++.... . ....++..|+.+. +.++..
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~-~------~~~~~~~~D~~~~~~v~~~~~~ 81 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEE-L------DAPIFLPLDVREPGQLEAVFAR 81 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHh-h------ccceEEecCcCCHHHHHHHHHH
Confidence 567888889887 377777777652 234777777775433323222222 1 2334566676651 222111
Q ss_pred -hccCCceeEEecCccc
Q psy5757 104 -MMKFDRYDFLPHAPAE 119 (139)
Q Consensus 104 -~~~~~~~D~vi~~~~~ 119 (139)
...++++|+++.|...
T Consensus 82 ~~~~~g~ld~lv~nAg~ 98 (258)
T PRK07533 82 IAEEWGRLDFLLHSIAF 98 (258)
T ss_pred HHHHcCCCCEEEEcCcc
Confidence 1234679999998754
No 344
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=87.00 E-value=8.6 Score=27.09 Aligned_cols=83 Identities=10% Similarity=0.117 Sum_probs=49.2
Q ss_pred CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhhh-
Q psy5757 29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVELM- 104 (139)
Q Consensus 29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~- 104 (139)
+++.+|-.|+ +|..+..+++.+. ...+++.++.++..++.+.+.+... ..++.++..|+.+. +..+...
T Consensus 4 ~~~~~lItG~-~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~~~ 76 (253)
T PRK08217 4 KDKVIVITGG-AQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGAL------GTEVRGYAANVTDEEDVEATFAQI 76 (253)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCceEEEEcCCCCHHHHHHHHHHH
Confidence 4567887775 5666666666552 2347899998877666555544431 14677777886641 1111111
Q ss_pred -ccCCceeEEecCcc
Q psy5757 105 -MKFDRYDFLPHAPA 118 (139)
Q Consensus 105 -~~~~~~D~vi~~~~ 118 (139)
...+.+|++|++..
T Consensus 77 ~~~~~~id~vi~~ag 91 (253)
T PRK08217 77 AEDFGQLNGLINNAG 91 (253)
T ss_pred HHHcCCCCEEEECCC
Confidence 11246899998875
No 345
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=86.99 E-value=5.6 Score=29.57 Aligned_cols=83 Identities=16% Similarity=0.205 Sum_probs=47.1
Q ss_pred CCCCeEEEEcccCChhHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757 28 NENSKVLEIGSGSGYLTNMISELMNS-TGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMM 105 (139)
Q Consensus 28 ~~~~~iLdiG~G~G~~~~~l~~~~~~-~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 105 (139)
..++++|-.| |+|..+..+++.+-. ..+|+++..++............ +. ..+++++.+|+.+ ...+..-
T Consensus 3 ~~~k~vlVtG-~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-----~~~~~~~~~D~~d-~~~~~~~- 74 (325)
T PLN02989 3 DGGKVVCVTG-ASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGA-----KERLKLFKADLLD-EGSFELA- 74 (325)
T ss_pred CCCCEEEEEC-CchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCC-----CCceEEEeCCCCC-chHHHHH-
Confidence 3467787776 678888888876622 33676666554433322222111 11 1468888899876 2222111
Q ss_pred cCCceeEEecCccc
Q psy5757 106 KFDRYDFLPHAPAE 119 (139)
Q Consensus 106 ~~~~~D~vi~~~~~ 119 (139)
.+.+|+|+++...
T Consensus 75 -~~~~d~vih~A~~ 87 (325)
T PLN02989 75 -IDGCETVFHTASP 87 (325)
T ss_pred -HcCCCEEEEeCCC
Confidence 2347988888763
No 346
>PRK05867 short chain dehydrogenase; Provisional
Probab=86.55 E-value=9.6 Score=27.15 Aligned_cols=84 Identities=11% Similarity=0.057 Sum_probs=49.6
Q ss_pred CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--
Q psy5757 29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL-- 103 (139)
Q Consensus 29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~-- 103 (139)
+++.+|-.|++ |..+..+++.+- ...+|+.++.+++.++...+.+... ..++..+..|+.+. +..+..
T Consensus 8 ~~k~vlVtGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~------~~~~~~~~~D~~~~~~~~~~~~~~ 80 (253)
T PRK05867 8 HGKRALITGAS-TGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTS------GGKVVPVCCDVSQHQQVTSMLDQV 80 (253)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhc------CCeEEEEEccCCCHHHHHHHHHHH
Confidence 46778887764 455555555442 2348888888877666665554431 13566777787651 221111
Q ss_pred hccCCceeEEecCccc
Q psy5757 104 MMKFDRYDFLPHAPAE 119 (139)
Q Consensus 104 ~~~~~~~D~vi~~~~~ 119 (139)
....+++|+++.+...
T Consensus 81 ~~~~g~id~lv~~ag~ 96 (253)
T PRK05867 81 TAELGGIDIAVCNAGI 96 (253)
T ss_pred HHHhCCCCEEEECCCC
Confidence 1123578999988754
No 347
>PRK08251 short chain dehydrogenase; Provisional
Probab=86.54 E-value=9.3 Score=27.00 Aligned_cols=83 Identities=12% Similarity=0.042 Sum_probs=50.1
Q ss_pred CeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--hc
Q psy5757 31 SKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL--MM 105 (139)
Q Consensus 31 ~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~--~~ 105 (139)
+.+|-.| |+|..+..+++.+. ...+++..+.++...+.....+.... ...+++++..|+.+. +.++.. ..
T Consensus 3 k~vlItG-as~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~~D~~~~~~~~~~~~~~~~ 77 (248)
T PRK08251 3 QKILITG-ASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARY----PGIKVAVAALDVNDHDQVFEVFAEFRD 77 (248)
T ss_pred CEEEEEC-CCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhC----CCceEEEEEcCCCCHHHHHHHHHHHHH
Confidence 4677666 57777777777662 23488888888777666555443310 024678888887762 111111 11
Q ss_pred cCCceeEEecCcc
Q psy5757 106 KFDRYDFLPHAPA 118 (139)
Q Consensus 106 ~~~~~D~vi~~~~ 118 (139)
..+.+|+++.+..
T Consensus 78 ~~~~id~vi~~ag 90 (248)
T PRK08251 78 ELGGLDRVIVNAG 90 (248)
T ss_pred HcCCCCEEEECCC
Confidence 2456899988874
No 348
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=86.51 E-value=10 Score=27.77 Aligned_cols=80 Identities=21% Similarity=0.241 Sum_probs=50.6
Q ss_pred CCeEEEEcccCCh---hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhh--HHH--h
Q psy5757 30 NSKVLEIGSGSGY---LTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRI--ETV--E 102 (139)
Q Consensus 30 ~~~iLdiG~G~G~---~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~--~~~--~ 102 (139)
++.++-=|+++|. .+..+++... +|+...-..+.++.....+.. .++..+..|+++.- +.+ .
T Consensus 6 ~kv~lITGASSGiG~A~A~~l~~~G~---~vvl~aRR~drL~~la~~~~~--------~~~~~~~~DVtD~~~~~~~i~~ 74 (246)
T COG4221 6 GKVALITGASSGIGEATARALAEAGA---KVVLAARREERLEALADEIGA--------GAALALALDVTDRAAVEAAIEA 74 (246)
T ss_pred CcEEEEecCcchHHHHHHHHHHHCCC---eEEEEeccHHHHHHHHHhhcc--------CceEEEeeccCCHHHHHHHHHH
Confidence 3455665666653 3444444443 899999998888887777643 35667777877631 111 1
Q ss_pred hhccCCceeEEecCcccc
Q psy5757 103 LMMKFDRYDFLPHAPAES 120 (139)
Q Consensus 103 ~~~~~~~~D~vi~~~~~~ 120 (139)
....++++|+++.|.-+.
T Consensus 75 ~~~~~g~iDiLvNNAGl~ 92 (246)
T COG4221 75 LPEEFGRIDILVNNAGLA 92 (246)
T ss_pred HHHhhCcccEEEecCCCC
Confidence 334577899999987533
No 349
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=86.43 E-value=9.5 Score=27.01 Aligned_cols=85 Identities=12% Similarity=0.157 Sum_probs=50.0
Q ss_pred CCCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchh----hhHHHh
Q psy5757 28 NENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIK----RIETVE 102 (139)
Q Consensus 28 ~~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~----~~~~~~ 102 (139)
.+++.+|-.| |+|..+..+++.+. ...+|+.++.++...+...+.++. ....++.++..|+.. .+..+.
T Consensus 10 ~~~k~vlItG-~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~-----~~~~~~~~~~~d~~~~~~~~~~~~~ 83 (247)
T PRK08945 10 LKDRIILVTG-AGDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEA-----AGGPQPAIIPLDLLTATPQNYQQLA 83 (247)
T ss_pred cCCCEEEEeC-CCchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHh-----cCCCCceEEEecccCCCHHHHHHHH
Confidence 4667888887 56777777766552 234899999987766665555544 111355666666531 111110
Q ss_pred --hhccCCceeEEecCcc
Q psy5757 103 --LMMKFDRYDFLPHAPA 118 (139)
Q Consensus 103 --~~~~~~~~D~vi~~~~ 118 (139)
......++|.++++..
T Consensus 84 ~~~~~~~~~id~vi~~Ag 101 (247)
T PRK08945 84 DTIEEQFGRLDGVLHNAG 101 (247)
T ss_pred HHHHHHhCCCCEEEECCc
Confidence 1112356899998864
No 350
>PRK06720 hypothetical protein; Provisional
Probab=86.41 E-value=8.3 Score=26.30 Aligned_cols=86 Identities=21% Similarity=0.273 Sum_probs=47.1
Q ss_pred CCCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--
Q psy5757 29 ENSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL-- 103 (139)
Q Consensus 29 ~~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~-- 103 (139)
+++.++-.|.+.| .+..++..+ ....+++.++.+++..+.+.+.+.. . ..+..++..|..+. +.++..
T Consensus 15 ~gk~~lVTGa~~G-IG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l~~-----~-~~~~~~~~~Dl~~~~~v~~~v~~~ 87 (169)
T PRK06720 15 AGKVAIVTGGGIG-IGRNTALLLAKQGAKVIVTDIDQESGQATVEEITN-----L-GGEALFVSYDMEKQGDWQRVISIT 87 (169)
T ss_pred CCCEEEEecCCCh-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh-----c-CCcEEEEEccCCCHHHHHHHHHHH
Confidence 4567777776554 444444433 2234888889887766555444433 0 13455667776541 122111
Q ss_pred hccCCceeEEecCccccc
Q psy5757 104 MMKFDRYDFLPHAPAESW 121 (139)
Q Consensus 104 ~~~~~~~D~vi~~~~~~~ 121 (139)
....+.+|+++.|....+
T Consensus 88 ~~~~G~iDilVnnAG~~~ 105 (169)
T PRK06720 88 LNAFSRIDMLFQNAGLYK 105 (169)
T ss_pred HHHcCCCCEEEECCCcCC
Confidence 113467899998876444
No 351
>PRK06194 hypothetical protein; Provisional
Probab=86.34 E-value=8.7 Score=27.90 Aligned_cols=83 Identities=6% Similarity=0.071 Sum_probs=49.3
Q ss_pred CCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--h
Q psy5757 30 NSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL--M 104 (139)
Q Consensus 30 ~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~--~ 104 (139)
++++|-.| |+|..+..+++.+. ...+|+.++.+++.++...+.+... ..++.++.+|+.+. +..+.. .
T Consensus 6 ~k~vlVtG-asggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~d~~~~~~~~~~~~ 78 (287)
T PRK06194 6 GKVAVITG-AASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQ------GAEVLGVRTDVSDAAQVEALADAAL 78 (287)
T ss_pred CCEEEEeC-CccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhc------CCeEEEEECCCCCHHHHHHHHHHHH
Confidence 45677555 55666766666552 2348899998876666554444331 13577788887751 222111 1
Q ss_pred ccCCceeEEecCccc
Q psy5757 105 MKFDRYDFLPHAPAE 119 (139)
Q Consensus 105 ~~~~~~D~vi~~~~~ 119 (139)
...+.+|+++.+...
T Consensus 79 ~~~g~id~vi~~Ag~ 93 (287)
T PRK06194 79 ERFGAVHLLFNNAGV 93 (287)
T ss_pred HHcCCCCEEEECCCC
Confidence 123468999998864
No 352
>PRK11524 putative methyltransferase; Provisional
Probab=86.13 E-value=0.24 Score=36.73 Aligned_cols=32 Identities=6% Similarity=0.141 Sum_probs=23.5
Q ss_pred CcEEEEEccchhhhHHHhhhccCCceeEEecCcccc
Q psy5757 85 GHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAES 120 (139)
Q Consensus 85 ~~i~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~~ 120 (139)
.+..++++|..+.+.. .+.++||+|+++|++.
T Consensus 7 ~~~~i~~gD~~~~l~~----l~~~siDlIitDPPY~ 38 (284)
T PRK11524 7 EAKTIIHGDALTELKK----IPSESVDLIFADPPYN 38 (284)
T ss_pred CCCEEEeccHHHHHHh----cccCcccEEEECCCcc
Confidence 4567889997775443 3457899999999863
No 353
>COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=86.09 E-value=3.9 Score=31.79 Aligned_cols=86 Identities=13% Similarity=0.104 Sum_probs=50.3
Q ss_pred EcccCChhHHHHHHHc--CCCceEEEEe---CCHHHHHHHHHHHHh-hccccccCCcEEEEEccchh---hhHHHhhhcc
Q psy5757 36 IGSGSGYLTNMISELM--NSTGQVIGIE---HVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIK---RIETVELMMK 106 (139)
Q Consensus 36 iG~G~G~~~~~l~~~~--~~~~~v~~~d---~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~---~~~~~~~~~~ 106 (139)
+..+||.++.++...+ ..+++|+|.= -++.+.+..++.+.. ....-+..+++..+.+|..+ +++...-..=
T Consensus 5 LTGATGFLG~yLl~eLL~~~~~kv~cLVRA~s~E~a~~RL~~~~~~~~~~~e~~~~ri~vv~gDl~e~~lGL~~~~~~~L 84 (382)
T COG3320 5 LTGATGFLGAYLLLELLDRSDAKVICLVRAQSDEAALARLEKTFDLYRHWDELSADRVEVVAGDLAEPDLGLSERTWQEL 84 (382)
T ss_pred EecCchHhHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHHhhhhhhhhhhhcceEEEEecccccccCCCCHHHHHHH
Confidence 4567999998887765 3346787765 334455555555541 11011224799999999764 1221111111
Q ss_pred CCceeEEecCccccc
Q psy5757 107 FDRYDFLPHAPAESW 121 (139)
Q Consensus 107 ~~~~D~vi~~~~~~~ 121 (139)
.+++|.|+.+.+.++
T Consensus 85 a~~vD~I~H~gA~Vn 99 (382)
T COG3320 85 AENVDLIIHNAALVN 99 (382)
T ss_pred hhhcceEEecchhhc
Confidence 246999999998544
No 354
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=86.01 E-value=3.4 Score=32.17 Aligned_cols=46 Identities=11% Similarity=0.104 Sum_probs=32.6
Q ss_pred CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHH
Q psy5757 27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNIL 75 (139)
Q Consensus 27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~ 75 (139)
+.++.+||-|.+|......++..... +|+++|+||..+...+-++.
T Consensus 33 i~~~d~vl~ItSaG~N~L~yL~~~P~---~I~aVDlNp~Q~aLleLKlA 78 (380)
T PF11899_consen 33 IGPDDRVLTITSAGCNALDYLLAGPK---RIHAVDLNPAQNALLELKLA 78 (380)
T ss_pred CCCCCeEEEEccCCchHHHHHhcCCc---eEEEEeCCHHHHHHHHHHHH
Confidence 67889999996655555555444433 99999999987766655544
No 355
>PRK07062 short chain dehydrogenase; Provisional
Probab=85.97 E-value=11 Score=27.09 Aligned_cols=86 Identities=12% Similarity=0.108 Sum_probs=50.6
Q ss_pred CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--
Q psy5757 29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL-- 103 (139)
Q Consensus 29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~-- 103 (139)
.++.+|-.|+ ++..+..+++.+. ...+|+.++.+++.++.+.+.+.... ...++.++..|+.+. +.++..
T Consensus 7 ~~k~~lItGa-s~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~~D~~~~~~v~~~~~~~ 81 (265)
T PRK07062 7 EGRVAVVTGG-SSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKF----PGARLLAARCDVLDEADVAAFAAAV 81 (265)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhC----CCceEEEEEecCCCHHHHHHHHHHH
Confidence 4567777775 4555666666552 24489999988877766655544310 013577777787762 112111
Q ss_pred hccCCceeEEecCccc
Q psy5757 104 MMKFDRYDFLPHAPAE 119 (139)
Q Consensus 104 ~~~~~~~D~vi~~~~~ 119 (139)
....+.+|+++.|...
T Consensus 82 ~~~~g~id~li~~Ag~ 97 (265)
T PRK07062 82 EARFGGVDMLVNNAGQ 97 (265)
T ss_pred HHhcCCCCEEEECCCC
Confidence 1134678999888753
No 356
>PRK05866 short chain dehydrogenase; Provisional
Probab=85.96 E-value=12 Score=27.66 Aligned_cols=82 Identities=13% Similarity=0.231 Sum_probs=48.9
Q ss_pred CCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--h
Q psy5757 30 NSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL--M 104 (139)
Q Consensus 30 ~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~--~ 104 (139)
++++|-.|+ +|..+..+++.+. ...+|+.++.+++.++...+.+... ..++.++..|+.+. +..+.. .
T Consensus 40 ~k~vlItGa-sggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~------~~~~~~~~~Dl~d~~~v~~~~~~~~ 112 (293)
T PRK05866 40 GKRILLTGA-SSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRA------GGDAMAVPCDLSDLDAVDALVADVE 112 (293)
T ss_pred CCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc------CCcEEEEEccCCCHHHHHHHHHHHH
Confidence 467777765 5566666666552 2348999999877766655554330 13466777887651 222111 1
Q ss_pred ccCCceeEEecCcc
Q psy5757 105 MKFDRYDFLPHAPA 118 (139)
Q Consensus 105 ~~~~~~D~vi~~~~ 118 (139)
...+.+|+++.+..
T Consensus 113 ~~~g~id~li~~AG 126 (293)
T PRK05866 113 KRIGGVDILINNAG 126 (293)
T ss_pred HHcCCCCEEEECCC
Confidence 12457899998865
No 357
>KOG3201|consensus
Probab=85.90 E-value=0.51 Score=32.55 Aligned_cols=48 Identities=19% Similarity=0.167 Sum_probs=37.4
Q ss_pred CCCCeEEEEccc-CChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh
Q psy5757 28 NENSKVLEIGSG-SGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH 76 (139)
Q Consensus 28 ~~~~~iLdiG~G-~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~ 76 (139)
..+.+|+|+|.| +|-.+.++|... +...|.-.|-+++.++..++..-.
T Consensus 28 ~rg~~ilelgggft~laglmia~~a-~~~~v~ltdgne~svrnv~ki~~~ 76 (201)
T KOG3201|consen 28 IRGRRILELGGGFTGLAGLMIACKA-PDSSVWLTDGNEESVRNVEKIRNS 76 (201)
T ss_pred HhHHHHHHhcCchhhhhhhheeeec-CCceEEEecCCHHHHHHHHHHHhc
Confidence 356899999999 666666777666 456999999999999888776644
No 358
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=85.71 E-value=2.8 Score=34.75 Aligned_cols=71 Identities=14% Similarity=0.180 Sum_probs=43.3
Q ss_pred CeEEEEcccCChhHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccCCc
Q psy5757 31 SKVLEIGSGSGYLTNMISELMNS-TGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKFDR 109 (139)
Q Consensus 31 ~~iLdiG~G~G~~~~~l~~~~~~-~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~ 109 (139)
.+++-+| .|..+..+++.... .-.++.+|.|++.++.+++ ....++.+|..+ .+-+ ..+..++
T Consensus 401 ~~vII~G--~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~------------~g~~v~~GDat~-~~~L-~~agi~~ 464 (621)
T PRK03562 401 PRVIIAG--FGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRK------------FGMKVFYGDATR-MDLL-ESAGAAK 464 (621)
T ss_pred CcEEEEe--cChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh------------cCCeEEEEeCCC-HHHH-HhcCCCc
Confidence 4566654 55566666665422 2379999999998887754 234578888776 2222 2234456
Q ss_pred eeEEecCc
Q psy5757 110 YDFLPHAP 117 (139)
Q Consensus 110 ~D~vi~~~ 117 (139)
.|++++.-
T Consensus 465 A~~vvv~~ 472 (621)
T PRK03562 465 AEVLINAI 472 (621)
T ss_pred CCEEEEEe
Confidence 66665543
No 359
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=85.64 E-value=3.7 Score=33.86 Aligned_cols=70 Identities=14% Similarity=0.080 Sum_probs=44.7
Q ss_pred eEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccCCce
Q psy5757 32 KVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKFDRY 110 (139)
Q Consensus 32 ~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~ 110 (139)
+++- ||.|..+..+++... ..-+++.+|.|++.++.+++ ....++.+|..+ .+-+ ..+..++.
T Consensus 402 ~vII--~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~------------~g~~v~~GDat~-~~~L-~~agi~~A 465 (601)
T PRK03659 402 QVII--VGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRK------------YGYKVYYGDATQ-LELL-RAAGAEKA 465 (601)
T ss_pred CEEE--ecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh------------CCCeEEEeeCCC-HHHH-HhcCCccC
Confidence 4544 667777777777653 23489999999998887754 234578888776 2222 23345566
Q ss_pred eEEecCc
Q psy5757 111 DFLPHAP 117 (139)
Q Consensus 111 D~vi~~~ 117 (139)
|+++..-
T Consensus 466 ~~vv~~~ 472 (601)
T PRK03659 466 EAIVITC 472 (601)
T ss_pred CEEEEEe
Confidence 7665544
No 360
>PRK06172 short chain dehydrogenase; Provisional
Probab=85.46 E-value=11 Score=26.78 Aligned_cols=84 Identities=12% Similarity=0.171 Sum_probs=50.6
Q ss_pred CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--
Q psy5757 29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL-- 103 (139)
Q Consensus 29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~-- 103 (139)
+++.+|-.|+ +|..+..+++.+. ...+|+.++-++..++.+.+.+... ..++.++..|+.+. +..+..
T Consensus 6 ~~k~ilItGa-s~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~i~~~~~~~ 78 (253)
T PRK06172 6 SGKVALVTGG-AAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREA------GGEALFVACDVTRDAEVKALVEQT 78 (253)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc------CCceEEEEcCCCCHHHHHHHHHHH
Confidence 4567888775 5566666665552 2348999998877666555554431 14678888887752 111111
Q ss_pred hccCCceeEEecCccc
Q psy5757 104 MMKFDRYDFLPHAPAE 119 (139)
Q Consensus 104 ~~~~~~~D~vi~~~~~ 119 (139)
....+++|+++++...
T Consensus 79 ~~~~g~id~li~~ag~ 94 (253)
T PRK06172 79 IAAYGRLDYAFNNAGI 94 (253)
T ss_pred HHHhCCCCEEEECCCC
Confidence 1123568999988753
No 361
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=84.96 E-value=12 Score=26.72 Aligned_cols=83 Identities=14% Similarity=0.093 Sum_probs=48.4
Q ss_pred CeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--hc
Q psy5757 31 SKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL--MM 105 (139)
Q Consensus 31 ~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~--~~ 105 (139)
+.+|-.| |+|..+..+++.+. ...+++.++.++...+...+.+.... ...++.++..|+.+. +.++.. ..
T Consensus 3 k~ilItG-~~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~~D~~~~~~i~~~~~~~~~ 77 (259)
T PRK12384 3 QVAVVIG-GGQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEY----GEGMAYGFGADATSEQSVLALSRGVDE 77 (259)
T ss_pred CEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhc----CCceeEEEEccCCCHHHHHHHHHHHHH
Confidence 4677777 56777777766552 23488999988766655544433210 013577888887751 111111 11
Q ss_pred cCCceeEEecCcc
Q psy5757 106 KFDRYDFLPHAPA 118 (139)
Q Consensus 106 ~~~~~D~vi~~~~ 118 (139)
..+.+|+++.+..
T Consensus 78 ~~~~id~vv~~ag 90 (259)
T PRK12384 78 IFGRVDLLVYNAG 90 (259)
T ss_pred HcCCCCEEEECCC
Confidence 2356899988875
No 362
>PRK07063 short chain dehydrogenase; Provisional
Probab=84.64 E-value=12 Score=26.67 Aligned_cols=85 Identities=12% Similarity=0.094 Sum_probs=50.8
Q ss_pred CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhh--hHHHhh-
Q psy5757 29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKR--IETVEL- 103 (139)
Q Consensus 29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~--~~~~~~- 103 (139)
.++.+|-.|++ |..+..+++.+- ...+|+.++.+++.++...+.+.. +. ..++.++..|+.+. +..+..
T Consensus 6 ~~k~vlVtGas-~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~~~~~~~~ 79 (260)
T PRK07063 6 AGKVALVTGAA-QGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVA-----GARVLAVPADVTDAASVAAAVAA 79 (260)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccC-----CceEEEEEccCCCHHHHHHHHHH
Confidence 45678877754 555666666552 234888999887777666555543 11 24677888887652 111111
Q ss_pred -hccCCceeEEecCccc
Q psy5757 104 -MMKFDRYDFLPHAPAE 119 (139)
Q Consensus 104 -~~~~~~~D~vi~~~~~ 119 (139)
....+.+|+++.+...
T Consensus 80 ~~~~~g~id~li~~ag~ 96 (260)
T PRK07063 80 AEEAFGPLDVLVNNAGI 96 (260)
T ss_pred HHHHhCCCcEEEECCCc
Confidence 1124578999988753
No 363
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=84.64 E-value=3.3 Score=31.84 Aligned_cols=46 Identities=22% Similarity=0.429 Sum_probs=37.0
Q ss_pred CCCCCeEEEEcccC-ChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHH
Q psy5757 27 LNENSKVLEIGSGS-GYLTNMISELMNSTGQVIGIEHVPQLVNSSIQN 73 (139)
Q Consensus 27 ~~~~~~iLdiG~G~-G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~ 73 (139)
+.++.+||..|+|. |..+..+++..+. .++++++.+++..+.+++.
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~-~~vi~~~~~~~~~~~~~~~ 228 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGA-ERVIAIDRVPERLEMARSH 228 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHc
Confidence 56788999999887 7788888888753 3699999999888877764
No 364
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=84.56 E-value=12 Score=26.62 Aligned_cols=79 Identities=16% Similarity=0.180 Sum_probs=47.1
Q ss_pred CCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--h
Q psy5757 30 NSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL--M 104 (139)
Q Consensus 30 ~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~--~ 104 (139)
++.+|-.| |+|.++..+++.+. ...+|+.++.+++..+...+.+. .++.++..|+.+. +..+.. .
T Consensus 6 ~~~vlItG-as~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~---------~~~~~~~~D~~~~~~~~~~~~~~~ 75 (257)
T PRK07067 6 GKVALLTG-AASGIGEAVAERYLAEGARVVIADIKPARARLAALEIG---------PAAIAVSLDVTRQDSIDRIVAAAV 75 (257)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHhC---------CceEEEEccCCCHHHHHHHHHHHH
Confidence 45677666 56677777776652 23488999888766555433321 3567777787651 221111 1
Q ss_pred ccCCceeEEecCcc
Q psy5757 105 MKFDRYDFLPHAPA 118 (139)
Q Consensus 105 ~~~~~~D~vi~~~~ 118 (139)
...+.+|+++.+..
T Consensus 76 ~~~~~id~li~~ag 89 (257)
T PRK07067 76 ERFGGIDILFNNAA 89 (257)
T ss_pred HHcCCCCEEEECCC
Confidence 12356899988765
No 365
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=84.39 E-value=13 Score=26.92 Aligned_cols=85 Identities=12% Similarity=0.075 Sum_probs=46.0
Q ss_pred CCCeEEEEcccC-ChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh-
Q psy5757 29 ENSKVLEIGSGS-GYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL- 103 (139)
Q Consensus 29 ~~~~iLdiG~G~-G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~- 103 (139)
+++.+|-.|+++ ++.+.++++.+. ...+|+..+.+....+.+++.... ..+..++..|+.+. +..+..
T Consensus 5 ~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~~~~~~~~~~~~~-------~~~~~~~~~Dl~~~~~v~~~~~~ 77 (262)
T PRK07984 5 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQ-------LGSDIVLPCDVAEDASIDAMFAE 77 (262)
T ss_pred CCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecchhHHHHHHHHHhc-------cCCceEeecCCCCHHHHHHHHHH
Confidence 456788888876 366666666552 234777777653222222222111 12345666777651 222111
Q ss_pred -hccCCceeEEecCcccc
Q psy5757 104 -MMKFDRYDFLPHAPAES 120 (139)
Q Consensus 104 -~~~~~~~D~vi~~~~~~ 120 (139)
...++++|++|.|....
T Consensus 78 ~~~~~g~iD~linnAg~~ 95 (262)
T PRK07984 78 LGKVWPKFDGFVHSIGFA 95 (262)
T ss_pred HHhhcCCCCEEEECCccC
Confidence 11356799999998643
No 366
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=84.33 E-value=12 Score=26.86 Aligned_cols=82 Identities=17% Similarity=0.148 Sum_probs=46.9
Q ss_pred CCCeEEEEcccC-ChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh-
Q psy5757 29 ENSKVLEIGSGS-GYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL- 103 (139)
Q Consensus 29 ~~~~iLdiG~G~-G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~- 103 (139)
.++.+|-.|+++ ++.+..+++.+- ...+|+..+.++...+. +.. +...++.++..|+.+. ++++..
T Consensus 6 ~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~~~~~~----~~~-----~~~~~~~~~~~Dl~~~~~v~~~~~~ 76 (252)
T PRK06079 6 SGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQNDRMKKS----LQK-----LVDEEDLLVECDVASDESIERAFAT 76 (252)
T ss_pred CCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCchHHHHH----HHh-----hccCceeEEeCCCCCHHHHHHHHHH
Confidence 457788888774 567777776662 33478877666332222 222 0014567777887752 222211
Q ss_pred -hccCCceeEEecCccc
Q psy5757 104 -MMKFDRYDFLPHAPAE 119 (139)
Q Consensus 104 -~~~~~~~D~vi~~~~~ 119 (139)
....+++|+++.|...
T Consensus 77 ~~~~~g~iD~lv~nAg~ 93 (252)
T PRK06079 77 IKERVGKIDGIVHAIAY 93 (252)
T ss_pred HHHHhCCCCEEEEcccc
Confidence 1134679999998764
No 367
>KOG2798|consensus
Probab=84.23 E-value=1.4 Score=33.51 Aligned_cols=56 Identities=16% Similarity=0.121 Sum_probs=40.0
Q ss_pred HHHHHHHhcccCCC------CCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHH
Q psy5757 16 ILTYLSIIQPHLNE------NSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNI 74 (139)
Q Consensus 16 ~~~~~~~l~~~~~~------~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~ 74 (139)
...+++.|..++++ ..+||--|||.|.++..++..+. ..-|-|.|-.|+-...-.+
T Consensus 131 ykpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~---~~qGNEfSy~Mli~S~FiL 192 (369)
T KOG2798|consen 131 YKPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGF---KCQGNEFSYFMLICSSFIL 192 (369)
T ss_pred hhhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcc---cccccHHHHHHHHHHHHHH
Confidence 34466666544433 55899999999999999999885 5666688877765544433
No 368
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=84.18 E-value=9.5 Score=25.07 Aligned_cols=82 Identities=16% Similarity=0.199 Sum_probs=46.9
Q ss_pred eEEEEcccCChhHHHHHHHcCCC--ceEEEEeCC--HHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--
Q psy5757 32 KVLEIGSGSGYLTNMISELMNST--GQVIGIEHV--PQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL-- 103 (139)
Q Consensus 32 ~iLdiG~G~G~~~~~l~~~~~~~--~~v~~~d~~--~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~-- 103 (139)
.+|-.|++ +..+..+++.+-.+ .+++.+.-+ .+..+.....+... ..++.++..|+.+. +..+..
T Consensus 2 ~~lItGa~-~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~------~~~~~~~~~D~~~~~~~~~~~~~~ 74 (167)
T PF00106_consen 2 TVLITGAS-SGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAP------GAKITFIECDLSDPESIRALIEEV 74 (167)
T ss_dssp EEEEETTT-SHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHT------TSEEEEEESETTSHHHHHHHHHHH
T ss_pred EEEEECCC-CHHHHHHHHHHHhcCceEEEEeeeccccccccccccccccc------cccccccccccccccccccccccc
Confidence 35555544 56666666655222 267777777 45555554444431 26788888887751 222111
Q ss_pred hccCCceeEEecCcccc
Q psy5757 104 MMKFDRYDFLPHAPAES 120 (139)
Q Consensus 104 ~~~~~~~D~vi~~~~~~ 120 (139)
......+|++|.+....
T Consensus 75 ~~~~~~ld~li~~ag~~ 91 (167)
T PF00106_consen 75 IKRFGPLDILINNAGIF 91 (167)
T ss_dssp HHHHSSESEEEEECSCT
T ss_pred ccccccccccccccccc
Confidence 12346799999887643
No 369
>PRK12829 short chain dehydrogenase; Provisional
Probab=84.11 E-value=13 Score=26.52 Aligned_cols=82 Identities=13% Similarity=0.155 Sum_probs=48.1
Q ss_pred CCCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhhh
Q psy5757 28 NENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVELM 104 (139)
Q Consensus 28 ~~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~ 104 (139)
.+++++|-.|+ +|..+..+++.+- ...+|++++.+++..+...+.... .++.++..|+.+. +.++...
T Consensus 9 ~~~~~vlItGa-~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~--------~~~~~~~~D~~~~~~~~~~~~~ 79 (264)
T PRK12829 9 LDGLRVLVTGG-ASGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLPG--------AKVTATVADVADPAQVERVFDT 79 (264)
T ss_pred cCCCEEEEeCC-CCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc--------CceEEEEccCCCHHHHHHHHHH
Confidence 45678888776 4666777766652 234889999887655544333322 2567777787651 1111111
Q ss_pred --ccCCceeEEecCcc
Q psy5757 105 --MKFDRYDFLPHAPA 118 (139)
Q Consensus 105 --~~~~~~D~vi~~~~ 118 (139)
.....+|.|+.+..
T Consensus 80 ~~~~~~~~d~vi~~ag 95 (264)
T PRK12829 80 AVERFGGLDVLVNNAG 95 (264)
T ss_pred HHHHhCCCCEEEECCC
Confidence 11245899988765
No 370
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=84.02 E-value=6.2 Score=30.89 Aligned_cols=76 Identities=14% Similarity=0.285 Sum_probs=46.2
Q ss_pred CeEEEEcccCChhHHHHHHHcCC--CceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccCC
Q psy5757 31 SKVLEIGSGSGYLTNMISELMNS--TGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKFD 108 (139)
Q Consensus 31 ~~iLdiG~G~G~~~~~l~~~~~~--~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~ 108 (139)
++||-||| |..+..++..... ..+|+..|-+.+.++.+..... .+++....|+.+ .+.+..- ..
T Consensus 2 ~~ilviGa--G~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~---------~~v~~~~vD~~d-~~al~~l--i~ 67 (389)
T COG1748 2 MKILVIGA--GGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG---------GKVEALQVDAAD-VDALVAL--IK 67 (389)
T ss_pred CcEEEECC--chhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc---------ccceeEEecccC-hHHHHHH--Hh
Confidence 57899999 5555555554321 2599999999877777655431 366677777655 2222111 12
Q ss_pred ceeEEecCcccc
Q psy5757 109 RYDFLPHAPAES 120 (139)
Q Consensus 109 ~~D~vi~~~~~~ 120 (139)
.+|+||+..+.+
T Consensus 68 ~~d~VIn~~p~~ 79 (389)
T COG1748 68 DFDLVINAAPPF 79 (389)
T ss_pred cCCEEEEeCCch
Confidence 358888777643
No 371
>KOG1205|consensus
Probab=83.98 E-value=9.8 Score=28.47 Aligned_cols=84 Identities=17% Similarity=0.227 Sum_probs=52.4
Q ss_pred CCCeEEEEcccCCh---hHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHh--
Q psy5757 29 ENSKVLEIGSGSGY---LTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVE-- 102 (139)
Q Consensus 29 ~~~~iLdiG~G~G~---~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~-- 102 (139)
.++.||-=||.+|. ++..++++.. +++-+--..+-++...+.+.. .- ..++..+..|+.+ ..+..
T Consensus 11 ~~kvVvITGASsGIG~~lA~~la~~G~---~l~lvar~~rrl~~v~~~l~~~~~-----~~~v~~~~~Dvs~-~~~~~~~ 81 (282)
T KOG1205|consen 11 AGKVVLITGASSGIGEALAYELAKRGA---KLVLVARRARRLERVAEELRKLGS-----LEKVLVLQLDVSD-EESVKKF 81 (282)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCC---ceEEeehhhhhHHHHHHHHHHhCC-----cCccEEEeCccCC-HHHHHHH
Confidence 45677877887773 4444444443 666666666667776555554 21 1258899999887 22221
Q ss_pred ---hhccCCceeEEecCccccc
Q psy5757 103 ---LMMKFDRYDFLPHAPAESW 121 (139)
Q Consensus 103 ---~~~~~~~~D~vi~~~~~~~ 121 (139)
....++.+|+++.|.-+..
T Consensus 82 ~~~~~~~fg~vDvLVNNAG~~~ 103 (282)
T KOG1205|consen 82 VEWAIRHFGRVDVLVNNAGISL 103 (282)
T ss_pred HHHHHHhcCCCCEEEecCcccc
Confidence 1235788999999986443
No 372
>PRK07074 short chain dehydrogenase; Provisional
Probab=83.86 E-value=12 Score=26.55 Aligned_cols=78 Identities=10% Similarity=0.121 Sum_probs=45.3
Q ss_pred CeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHh---h--h
Q psy5757 31 SKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVE---L--M 104 (139)
Q Consensus 31 ~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~---~--~ 104 (139)
+++|-.|+ +|..+..+++.+. ...+++.++.++...+...+.+.. .+++++..|+.+ .+.+. . .
T Consensus 3 k~ilItGa-t~~iG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~~--------~~~~~~~~D~~~-~~~~~~~~~~~~ 72 (257)
T PRK07074 3 RTALVTGA-AGGIGQALARRFLAAGDRVLALDIDAAALAAFADALGD--------ARFVPVACDLTD-AASLAAALANAA 72 (257)
T ss_pred CEEEEECC-cchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcC--------CceEEEEecCCC-HHHHHHHHHHHH
Confidence 45666665 4556777666552 234899999887655544333322 457777888765 22211 0 1
Q ss_pred ccCCceeEEecCcc
Q psy5757 105 MKFDRYDFLPHAPA 118 (139)
Q Consensus 105 ~~~~~~D~vi~~~~ 118 (139)
...+.+|+++.+..
T Consensus 73 ~~~~~~d~vi~~ag 86 (257)
T PRK07074 73 AERGPVDVLVANAG 86 (257)
T ss_pred HHcCCCCEEEECCC
Confidence 12345899988875
No 373
>PRK05872 short chain dehydrogenase; Provisional
Probab=83.73 E-value=12 Score=27.50 Aligned_cols=83 Identities=7% Similarity=0.086 Sum_probs=47.6
Q ss_pred CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--
Q psy5757 29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL-- 103 (139)
Q Consensus 29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~-- 103 (139)
+++.+|-.| |+|..+..+++.+. ...+|+.++.+++.++...+.+.. ..++..+..|+.+. ..++..
T Consensus 8 ~gk~vlItG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~-------~~~~~~~~~Dv~d~~~v~~~~~~~ 79 (296)
T PRK05872 8 AGKVVVVTG-AARGIGAELARRLHARGAKLALVDLEEAELAALAAELGG-------DDRVLTVVADVTDLAAMQAAAEEA 79 (296)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcC-------CCcEEEEEecCCCHHHHHHHHHHH
Confidence 456777666 45566666666552 234888899887766655444322 13445555676651 111111
Q ss_pred hccCCceeEEecCccc
Q psy5757 104 MMKFDRYDFLPHAPAE 119 (139)
Q Consensus 104 ~~~~~~~D~vi~~~~~ 119 (139)
....+.+|++|.|.-.
T Consensus 80 ~~~~g~id~vI~nAG~ 95 (296)
T PRK05872 80 VERFGGIDVVVANAGI 95 (296)
T ss_pred HHHcCCCCEEEECCCc
Confidence 1123578999988764
No 374
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=83.60 E-value=13 Score=26.19 Aligned_cols=83 Identities=17% Similarity=0.209 Sum_probs=48.5
Q ss_pred CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhhh-
Q psy5757 29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVELM- 104 (139)
Q Consensus 29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~- 104 (139)
+++++|-.|+ +|..+..+++.+- ...+|+.++-++...+.....+.. ..++.++..|+.+. +..+...
T Consensus 4 ~~~~vlItGa-sg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-------~~~~~~~~~D~~~~~~~~~~~~~~ 75 (251)
T PRK07231 4 EGKVAIVTGA-SSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILA-------GGRAIAVAADVSDEADVEAAVAAA 75 (251)
T ss_pred CCcEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc-------CCeEEEEECCCCCHHHHHHHHHHH
Confidence 3456777664 5566666665542 234899999987666555444332 13577888887751 1111110
Q ss_pred -ccCCceeEEecCccc
Q psy5757 105 -MKFDRYDFLPHAPAE 119 (139)
Q Consensus 105 -~~~~~~D~vi~~~~~ 119 (139)
...+.+|++|.+...
T Consensus 76 ~~~~~~~d~vi~~ag~ 91 (251)
T PRK07231 76 LERFGSVDILVNNAGT 91 (251)
T ss_pred HHHhCCCCEEEECCCC
Confidence 123568999988753
No 375
>PRK08219 short chain dehydrogenase; Provisional
Probab=83.41 E-value=11 Score=26.05 Aligned_cols=76 Identities=13% Similarity=0.152 Sum_probs=43.8
Q ss_pred CeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhh-hccCCc
Q psy5757 31 SKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVEL-MMKFDR 109 (139)
Q Consensus 31 ~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~-~~~~~~ 109 (139)
+++|-.|+ +|..+..+++.+-.+.+|++++.++...+...+.. .+++++.+|+.+ ...+.. -...+.
T Consensus 4 ~~vlVtG~-~g~iG~~l~~~l~~~~~V~~~~r~~~~~~~~~~~~----------~~~~~~~~D~~~-~~~~~~~~~~~~~ 71 (227)
T PRK08219 4 PTALITGA-SRGIGAAIARELAPTHTLLLGGRPAERLDELAAEL----------PGATPFPVDLTD-PEAIAAAVEQLGR 71 (227)
T ss_pred CEEEEecC-CcHHHHHHHHHHHhhCCEEEEeCCHHHHHHHHHHh----------ccceEEecCCCC-HHHHHHHHHhcCC
Confidence 46776665 56666666665422258999998865544332221 356778888776 222211 111235
Q ss_pred eeEEecCcc
Q psy5757 110 YDFLPHAPA 118 (139)
Q Consensus 110 ~D~vi~~~~ 118 (139)
+|.++.+..
T Consensus 72 id~vi~~ag 80 (227)
T PRK08219 72 LDVLVHNAG 80 (227)
T ss_pred CCEEEECCC
Confidence 888887764
No 376
>PRK07109 short chain dehydrogenase; Provisional
Probab=83.36 E-value=16 Score=27.56 Aligned_cols=83 Identities=10% Similarity=0.054 Sum_probs=49.7
Q ss_pred CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--
Q psy5757 29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL-- 103 (139)
Q Consensus 29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~-- 103 (139)
+++.+|-.| |+|..+..+++.+. ...+|+.++-+++.++...+.+.. . ..++.++..|+.+. +..+..
T Consensus 7 ~~k~vlITG-as~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~-----~-g~~~~~v~~Dv~d~~~v~~~~~~~ 79 (334)
T PRK07109 7 GRQVVVITG-ASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRA-----A-GGEALAVVADVADAEAVQAAADRA 79 (334)
T ss_pred CCCEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHH-----c-CCcEEEEEecCCCHHHHHHHHHHH
Confidence 345677766 45666666666552 234888888888777666555543 0 13577788887761 222111
Q ss_pred hccCCceeEEecCcc
Q psy5757 104 MMKFDRYDFLPHAPA 118 (139)
Q Consensus 104 ~~~~~~~D~vi~~~~ 118 (139)
....+.+|++|.|..
T Consensus 80 ~~~~g~iD~lInnAg 94 (334)
T PRK07109 80 EEELGPIDTWVNNAM 94 (334)
T ss_pred HHHCCCCCEEEECCC
Confidence 112457899988875
No 377
>PLN02253 xanthoxin dehydrogenase
Probab=83.27 E-value=13 Score=26.86 Aligned_cols=83 Identities=13% Similarity=0.162 Sum_probs=48.8
Q ss_pred CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHh--h
Q psy5757 29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVE--L 103 (139)
Q Consensus 29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~--~ 103 (139)
.++++|-.| |+|..+..+++.+. ...+|+.++.++...+...+.+.. ..++.++..|+.+. +..+. .
T Consensus 17 ~~k~~lItG-as~gIG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~Dl~d~~~~~~~~~~~ 88 (280)
T PLN02253 17 LGKVALVTG-GATGIGESIVRLFHKHGAKVCIVDLQDDLGQNVCDSLGG-------EPNVCFFHCDVTVEDDVSRAVDFT 88 (280)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcC-------CCceEEEEeecCCHHHHHHHHHHH
Confidence 456777666 56677777776552 234888888876655444333321 24677888887762 11111 1
Q ss_pred hccCCceeEEecCccc
Q psy5757 104 MMKFDRYDFLPHAPAE 119 (139)
Q Consensus 104 ~~~~~~~D~vi~~~~~ 119 (139)
....+++|+++.+...
T Consensus 89 ~~~~g~id~li~~Ag~ 104 (280)
T PLN02253 89 VDKFGTLDIMVNNAGL 104 (280)
T ss_pred HHHhCCCCEEEECCCc
Confidence 1123568999988753
No 378
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=83.23 E-value=15 Score=26.49 Aligned_cols=83 Identities=8% Similarity=0.003 Sum_probs=47.1
Q ss_pred CCCeEEEEcccC-ChhHHHHHHHcC-CCceEEEEeCCH---HHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHH
Q psy5757 29 ENSKVLEIGSGS-GYLTNMISELMN-STGQVIGIEHVP---QLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETV 101 (139)
Q Consensus 29 ~~~~iLdiG~G~-G~~~~~l~~~~~-~~~~v~~~d~~~---~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~ 101 (139)
.++.+|-.|+++ +..+..+++.+. ...+|+..+.+. +.++...+... ..++.++..|+.+. .+.+
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~--------~~~~~~~~~Dv~d~~~v~~~ 77 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLE--------GQESLLLPCDVTSDEEITAC 77 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcC--------CCceEEEecCCCCHHHHHHH
Confidence 467888888873 777777777663 234777665432 22222222211 14566777887752 2222
Q ss_pred hh--hccCCceeEEecCccc
Q psy5757 102 EL--MMKFDRYDFLPHAPAE 119 (139)
Q Consensus 102 ~~--~~~~~~~D~vi~~~~~ 119 (139)
.. ....+++|+++.|...
T Consensus 78 ~~~~~~~~g~ld~lv~nag~ 97 (257)
T PRK08594 78 FETIKEEVGVIHGVAHCIAF 97 (257)
T ss_pred HHHHHHhCCCccEEEECccc
Confidence 11 1234679999988653
No 379
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=83.22 E-value=7.3 Score=31.63 Aligned_cols=43 Identities=21% Similarity=0.271 Sum_probs=35.0
Q ss_pred CCCCeEEEEcccC-ChhHHHHHHHcCCCceEEEEeCCHHHHHHHHH
Q psy5757 28 NENSKVLEIGSGS-GYLTNMISELMNSTGQVIGIEHVPQLVNSSIQ 72 (139)
Q Consensus 28 ~~~~~iLdiG~G~-G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~ 72 (139)
.++.+|+-+|+|. |..+...++..+. +|+++|.+++.++.+++
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA--~V~a~D~~~~rle~aes 206 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGA--IVRAFDTRPEVAEQVES 206 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHH
Confidence 4678999999995 5566677777764 89999999998888876
No 380
>PRK06914 short chain dehydrogenase; Provisional
Probab=83.15 E-value=15 Score=26.54 Aligned_cols=82 Identities=13% Similarity=0.181 Sum_probs=48.3
Q ss_pred CCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHh----h
Q psy5757 30 NSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVE----L 103 (139)
Q Consensus 30 ~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~----~ 103 (139)
++.+|-.| |+|..+..+++.+ ....+|++++-+++..+...+.... +. ..+++++..|+.+ .+.+. .
T Consensus 3 ~k~~lItG-asg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-----~~~~~~~~~D~~d-~~~~~~~~~~ 75 (280)
T PRK06914 3 KKIAIVTG-ASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNL-----QQNIKVQQLDVTD-QNSIHNFQLV 75 (280)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCC-----CCceeEEecCCCC-HHHHHHHHHH
Confidence 34566666 5566667666654 2234888888887666555444333 11 2468888888876 22211 1
Q ss_pred hccCCceeEEecCcc
Q psy5757 104 MMKFDRYDFLPHAPA 118 (139)
Q Consensus 104 ~~~~~~~D~vi~~~~ 118 (139)
....+.+|+++.+..
T Consensus 76 ~~~~~~id~vv~~ag 90 (280)
T PRK06914 76 LKEIGRIDLLVNNAG 90 (280)
T ss_pred HHhcCCeeEEEECCc
Confidence 112356899988864
No 381
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=83.12 E-value=15 Score=27.31 Aligned_cols=84 Identities=11% Similarity=-0.013 Sum_probs=48.2
Q ss_pred CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhhh-
Q psy5757 29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVELM- 104 (139)
Q Consensus 29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~- 104 (139)
.++.+|-.|+ +|..+..+++.+- ...+|+.++-+++..+.+.+.+... ..++.++..|+.+. +..+...
T Consensus 5 ~~k~vlVTGa-s~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~------~~~~~~~~~Dl~~~~~v~~~~~~~ 77 (322)
T PRK07453 5 AKGTVIITGA-SSGVGLYAAKALAKRGWHVIMACRNLKKAEAAAQELGIP------PDSYTIIHIDLGDLDSVRRFVDDF 77 (322)
T ss_pred CCCEEEEEcC-CChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhcc------CCceEEEEecCCCHHHHHHHHHHH
Confidence 3556776664 5666666666552 2348888888876655554443221 14677888887651 1211111
Q ss_pred -ccCCceeEEecCccc
Q psy5757 105 -MKFDRYDFLPHAPAE 119 (139)
Q Consensus 105 -~~~~~~D~vi~~~~~ 119 (139)
.....+|++|.|...
T Consensus 78 ~~~~~~iD~li~nAg~ 93 (322)
T PRK07453 78 RALGKPLDALVCNAAV 93 (322)
T ss_pred HHhCCCccEEEECCcc
Confidence 123468999988753
No 382
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=83.05 E-value=15 Score=26.40 Aligned_cols=84 Identities=8% Similarity=0.033 Sum_probs=49.4
Q ss_pred CCCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--
Q psy5757 29 ENSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL-- 103 (139)
Q Consensus 29 ~~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~-- 103 (139)
.++++|-.|++. ..+..+++.+ ....+++..+.+++.++.+...+... ..++.++..|+.+. +.++..
T Consensus 9 ~~k~~lItGa~~-~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~------~~~~~~~~~Dl~~~~~~~~~~~~~ 81 (265)
T PRK07097 9 KGKIALITGASY-GIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYREL------GIEAHGYVCDVTDEDGVQAMVSQI 81 (265)
T ss_pred CCCEEEEeCCCc-hHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhc------CCceEEEEcCCCCHHHHHHHHHHH
Confidence 556788777654 4455555443 12347888888877766665555441 13577888887752 122111
Q ss_pred hccCCceeEEecCccc
Q psy5757 104 MMKFDRYDFLPHAPAE 119 (139)
Q Consensus 104 ~~~~~~~D~vi~~~~~ 119 (139)
....+.+|+++++...
T Consensus 82 ~~~~~~id~li~~ag~ 97 (265)
T PRK07097 82 EKEVGVIDILVNNAGI 97 (265)
T ss_pred HHhCCCCCEEEECCCC
Confidence 1123568999988763
No 383
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=83.04 E-value=14 Score=26.21 Aligned_cols=84 Identities=12% Similarity=0.136 Sum_probs=51.3
Q ss_pred CCCCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh-
Q psy5757 28 NENSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL- 103 (139)
Q Consensus 28 ~~~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~- 103 (139)
.+++++|-.| |+|..+..+++.+ ....+|+.++.+++.++...+.++.. ..++.++..|+.+. +.++..
T Consensus 9 ~~~k~ilItG-as~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~Dl~~~~~~~~~~~~ 81 (256)
T PRK06124 9 LAGQVALVTG-SARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAA------GGAAEALAFDIADEEAVAAAFAR 81 (256)
T ss_pred CCCCEEEEEC-CCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhc------CCceEEEEccCCCHHHHHHHHHH
Confidence 3567888777 4666677766655 22458999999877666655554431 13577888887651 111111
Q ss_pred -hccCCceeEEecCcc
Q psy5757 104 -MMKFDRYDFLPHAPA 118 (139)
Q Consensus 104 -~~~~~~~D~vi~~~~ 118 (139)
....+++|.++.+..
T Consensus 82 ~~~~~~~id~vi~~ag 97 (256)
T PRK06124 82 IDAEHGRLDILVNNVG 97 (256)
T ss_pred HHHhcCCCCEEEECCC
Confidence 112356899998875
No 384
>KOG1201|consensus
Probab=82.85 E-value=16 Score=27.53 Aligned_cols=82 Identities=18% Similarity=0.212 Sum_probs=50.7
Q ss_pred CCCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHh--h
Q psy5757 29 ENSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVE--L 103 (139)
Q Consensus 29 ~~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~--~ 103 (139)
.++.||-=|.|+|- ++.++..+ +..++++..|++++......+.... ..+++....|+.+. +.++. -
T Consensus 37 ~g~~vLITGgg~Gl-Gr~ialefa~rg~~~vl~Din~~~~~etv~~~~~-------~g~~~~y~cdis~~eei~~~a~~V 108 (300)
T KOG1201|consen 37 SGEIVLITGGGSGL-GRLIALEFAKRGAKLVLWDINKQGNEETVKEIRK-------IGEAKAYTCDISDREEIYRLAKKV 108 (300)
T ss_pred cCCEEEEeCCCchH-HHHHHHHHHHhCCeEEEEeccccchHHHHHHHHh-------cCceeEEEecCCCHHHHHHHHHHH
Confidence 46677777777663 33333333 2233889999999888888777765 12566666676651 22211 1
Q ss_pred hccCCceeEEecCcc
Q psy5757 104 MMKFDRYDFLPHAPA 118 (139)
Q Consensus 104 ~~~~~~~D~vi~~~~ 118 (139)
....+.+|+++.|..
T Consensus 109 k~e~G~V~ILVNNAG 123 (300)
T KOG1201|consen 109 KKEVGDVDILVNNAG 123 (300)
T ss_pred HHhcCCceEEEeccc
Confidence 223567999999886
No 385
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=82.65 E-value=19 Score=27.25 Aligned_cols=81 Identities=11% Similarity=0.140 Sum_probs=47.9
Q ss_pred CCCCeEEEEcccCChhHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757 28 NENSKVLEIGSGSGYLTNMISELMNS-TGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMK 106 (139)
Q Consensus 28 ~~~~~iLdiG~G~G~~~~~l~~~~~~-~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 106 (139)
..+++||-.| |+|..+..+++.+-. ..+|++++-++.........+.. ..+++++.+|+.+. ..+..-
T Consensus 8 ~~~~~vLVtG-~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~-------~~~~~~~~~Dl~~~-~~~~~~-- 76 (353)
T PLN02896 8 SATGTYCVTG-ATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKE-------GDRLRLFRADLQEE-GSFDEA-- 76 (353)
T ss_pred cCCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhcc-------CCeEEEEECCCCCH-HHHHHH--
Confidence 5677888776 578888888886632 23788887665433222221111 24688888887762 222111
Q ss_pred CCceeEEecCccc
Q psy5757 107 FDRYDFLPHAPAE 119 (139)
Q Consensus 107 ~~~~D~vi~~~~~ 119 (139)
...+|+||.....
T Consensus 77 ~~~~d~Vih~A~~ 89 (353)
T PLN02896 77 VKGCDGVFHVAAS 89 (353)
T ss_pred HcCCCEEEECCcc
Confidence 1247888877753
No 386
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=82.59 E-value=4.1 Score=30.45 Aligned_cols=72 Identities=13% Similarity=0.171 Sum_probs=49.8
Q ss_pred cCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757 26 HLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMM 105 (139)
Q Consensus 26 ~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 105 (139)
.+.+++.-+|+|+..|+.+-.|.++.= .|+++|.-+ | |+.... ...++.+..|..+ +. -
T Consensus 208 rL~~~M~avDLGAcPGGWTyqLVkr~m---~V~aVDng~-m---a~sL~d--------tg~v~h~r~DGfk-~~-----P 266 (358)
T COG2933 208 RLAPGMWAVDLGACPGGWTYQLVKRNM---RVYAVDNGP-M---AQSLMD--------TGQVTHLREDGFK-FR-----P 266 (358)
T ss_pred hhcCCceeeecccCCCccchhhhhcce---EEEEeccch-h---hhhhhc--------ccceeeeeccCcc-cc-----c
Confidence 357899999999999999999999874 899999764 1 111111 2567777777655 22 0
Q ss_pred cCCceeEEecCcc
Q psy5757 106 KFDRYDFLPHAPA 118 (139)
Q Consensus 106 ~~~~~D~vi~~~~ 118 (139)
+-..+|..+|..+
T Consensus 267 ~r~~idWmVCDmV 279 (358)
T COG2933 267 TRSNIDWMVCDMV 279 (358)
T ss_pred CCCCCceEEeehh
Confidence 1345788877765
No 387
>PRK07102 short chain dehydrogenase; Provisional
Probab=82.31 E-value=15 Score=25.92 Aligned_cols=81 Identities=9% Similarity=0.024 Sum_probs=47.2
Q ss_pred CeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhhhccC
Q psy5757 31 SKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVELMMKF 107 (139)
Q Consensus 31 ~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~~~~ 107 (139)
++++-.| |+|..+..+++.+- ...+|+.++.+++..+...+.+... ...+++++..|..+. +..+.... .
T Consensus 2 ~~vlItG-as~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~~Dl~~~~~~~~~~~~~-~ 74 (243)
T PRK07102 2 KKILIIG-ATSDIARACARRYAAAGARLYLAARDVERLERLADDLRAR-----GAVAVSTHELDILDTASHAAFLDSL-P 74 (243)
T ss_pred cEEEEEc-CCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHh-----cCCeEEEEecCCCChHHHHHHHHHH-h
Confidence 3567666 56777777766662 2348999998876655444433320 125788888887762 12221111 1
Q ss_pred CceeEEecCcc
Q psy5757 108 DRYDFLPHAPA 118 (139)
Q Consensus 108 ~~~D~vi~~~~ 118 (139)
..+|+++.+..
T Consensus 75 ~~~d~vv~~ag 85 (243)
T PRK07102 75 ALPDIVLIAVG 85 (243)
T ss_pred hcCCEEEECCc
Confidence 24699987653
No 388
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=82.24 E-value=4.6 Score=30.67 Aligned_cols=46 Identities=13% Similarity=0.206 Sum_probs=36.3
Q ss_pred CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh
Q psy5757 28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH 76 (139)
Q Consensus 28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~ 76 (139)
..+.+|+-+|+|.+....++++... ++.++|+++.-+..-+-++..
T Consensus 62 g~ghrivtigSGGcn~L~ylsr~Pa---~id~VDlN~ahiAln~lklaA 107 (414)
T COG5379 62 GIGHRIVTIGSGGCNMLAYLSRAPA---RIDVVDLNPAHIALNRLKLAA 107 (414)
T ss_pred CCCcEEEEecCCcchHHHHhhcCCc---eeEEEeCCHHHHHHHHHHHHH
Confidence 4567999999998888888887654 999999999887766555543
No 389
>PRK06197 short chain dehydrogenase; Provisional
Probab=82.10 E-value=18 Score=26.69 Aligned_cols=86 Identities=9% Similarity=0.089 Sum_probs=50.2
Q ss_pred CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--
Q psy5757 29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL-- 103 (139)
Q Consensus 29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~-- 103 (139)
.++.+|-.| |+|..+..+++.+. ...+|+.+..+++..+.+.+.+.... ...++.++..|+.+. +..+..
T Consensus 15 ~~k~vlItG-as~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~----~~~~~~~~~~Dl~d~~~v~~~~~~~ 89 (306)
T PRK06197 15 SGRVAVVTG-ANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAAT----PGADVTLQELDLTSLASVRAAADAL 89 (306)
T ss_pred CCCEEEEcC-CCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC----CCCceEEEECCCCCHHHHHHHHHHH
Confidence 456777665 46666777766552 23478888888766665554443310 014677888887762 111111
Q ss_pred hccCCceeEEecCccc
Q psy5757 104 MMKFDRYDFLPHAPAE 119 (139)
Q Consensus 104 ~~~~~~~D~vi~~~~~ 119 (139)
....+.+|++|.+...
T Consensus 90 ~~~~~~iD~li~nAg~ 105 (306)
T PRK06197 90 RAAYPRIDLLINNAGV 105 (306)
T ss_pred HhhCCCCCEEEECCcc
Confidence 1124568999998864
No 390
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=81.88 E-value=17 Score=26.22 Aligned_cols=85 Identities=14% Similarity=0.042 Sum_probs=46.2
Q ss_pred CCCeEEEEcc-cCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh-
Q psy5757 29 ENSKVLEIGS-GSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL- 103 (139)
Q Consensus 29 ~~~~iLdiG~-G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~- 103 (139)
+++.+|--|+ +++..+..+++.+. ...+|+....+....+.+++..... .....+..|+.+. ++++..
T Consensus 5 ~~k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~Dv~~~~~v~~~~~~ 77 (261)
T PRK08690 5 QGKKILITGMISERSIAYGIAKACREQGAELAFTYVVDKLEERVRKMAAEL-------DSELVFRCDVASDDEINQVFAD 77 (261)
T ss_pred CCcEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHhcc-------CCceEEECCCCCHHHHHHHHHH
Confidence 4567888887 46777788877663 2347776655433223333322220 2234566777651 222211
Q ss_pred -hccCCceeEEecCcccc
Q psy5757 104 -MMKFDRYDFLPHAPAES 120 (139)
Q Consensus 104 -~~~~~~~D~vi~~~~~~ 120 (139)
....+.+|+++.|.-..
T Consensus 78 ~~~~~g~iD~lVnnAG~~ 95 (261)
T PRK08690 78 LGKHWDGLDGLVHSIGFA 95 (261)
T ss_pred HHHHhCCCcEEEECCccC
Confidence 11346799999998643
No 391
>PRK12939 short chain dehydrogenase; Provisional
Probab=81.85 E-value=15 Score=25.77 Aligned_cols=83 Identities=11% Similarity=0.083 Sum_probs=50.2
Q ss_pred CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhhh-
Q psy5757 29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVELM- 104 (139)
Q Consensus 29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~- 104 (139)
+++.+|-.| |+|..+..+++.+. ...+++.++.+++.+....+.++.. ..++.++..|+.+. +..+...
T Consensus 6 ~~~~vlItG-a~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~Dl~~~~~~~~~~~~~ 78 (250)
T PRK12939 6 AGKRALVTG-AARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAA------GGRAHAIAADLADPASVQRFFDAA 78 (250)
T ss_pred CCCEEEEeC-CCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc------CCcEEEEEccCCCHHHHHHHHHHH
Confidence 356777665 56777777777662 2347888888877666655554431 14678888887751 1221111
Q ss_pred -ccCCceeEEecCcc
Q psy5757 105 -MKFDRYDFLPHAPA 118 (139)
Q Consensus 105 -~~~~~~D~vi~~~~ 118 (139)
...+.+|+++.+..
T Consensus 79 ~~~~~~id~vi~~ag 93 (250)
T PRK12939 79 AAALGGLDGLVNNAG 93 (250)
T ss_pred HHHcCCCCEEEECCC
Confidence 11246899988764
No 392
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=81.75 E-value=17 Score=26.07 Aligned_cols=81 Identities=14% Similarity=0.099 Sum_probs=47.1
Q ss_pred CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--
Q psy5757 29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL-- 103 (139)
Q Consensus 29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~-- 103 (139)
+++.+|-.|+ +|..+..+++.+. ...+|+.++.+++.++...+.. ..++.++..|+.+. +..+..
T Consensus 5 ~~k~vlVtGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~---------~~~~~~~~~D~~~~~~~~~~~~~~ 74 (263)
T PRK06200 5 HGQVALITGG-GSGIGRALVERFLAEGARVAVLERSAEKLASLRQRF---------GDHVLVVEGDVTSYADNQRAVDQT 74 (263)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---------CCcceEEEccCCCHHHHHHHHHHH
Confidence 4567777775 4555666555542 2348889998876655443332 13566777777651 121111
Q ss_pred hccCCceeEEecCccc
Q psy5757 104 MMKFDRYDFLPHAPAE 119 (139)
Q Consensus 104 ~~~~~~~D~vi~~~~~ 119 (139)
....+.+|+++.+...
T Consensus 75 ~~~~g~id~li~~ag~ 90 (263)
T PRK06200 75 VDAFGKLDCFVGNAGI 90 (263)
T ss_pred HHhcCCCCEEEECCCC
Confidence 1124578999988764
No 393
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=81.58 E-value=17 Score=26.96 Aligned_cols=97 Identities=14% Similarity=0.136 Sum_probs=67.8
Q ss_pred ChHHHHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEE
Q psy5757 12 GISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVA 91 (139)
Q Consensus 12 ~~~~~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~ 91 (139)
.+......++.+.. +.++.. +..-+||--++..+.+.-. ++..+|..|.-....++++.. ..++.+..
T Consensus 73 lpa~l~~yl~~i~~-lN~~~~-l~~YpGSP~lA~~llR~qD---Rl~l~ELHp~D~~~L~~~f~~-------d~~vrv~~ 140 (279)
T COG2961 73 LPAELEPYLDAVRQ-LNPGGG-LRYYPGSPLLARQLLREQD---RLVLTELHPSDAPLLRNNFAG-------DRRVRVLR 140 (279)
T ss_pred chHHHHHHHHHHHH-hCCCCC-cccCCCCHHHHHHHcchhc---eeeeeecCccHHHHHHHHhCC-------CcceEEEe
Confidence 34445566666653 444444 7888999999988888775 899999999999999988876 57899999
Q ss_pred ccchhhhHHHhhhccC-CceeEEecCccccccc
Q psy5757 92 LGMIKRIETVELMMKF-DRYDFLPHAPAESWMN 123 (139)
Q Consensus 92 ~d~~~~~~~~~~~~~~-~~~D~vi~~~~~~~~~ 123 (139)
+|....+ ....+. ++=-+|+..|+|..-.
T Consensus 141 ~DG~~~l---~a~LPP~erRglVLIDPPfE~~~ 170 (279)
T COG2961 141 GDGFLAL---KAHLPPKERRGLVLIDPPFELKD 170 (279)
T ss_pred cCcHHHH---hhhCCCCCcceEEEeCCCccccc
Confidence 9965433 222222 2346777777766443
No 394
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=81.38 E-value=11 Score=23.79 Aligned_cols=33 Identities=15% Similarity=0.299 Sum_probs=27.1
Q ss_pred cCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHH
Q psy5757 39 GSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQN 73 (139)
Q Consensus 39 G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~ 73 (139)
|.|..+..+++..+ +++++++.++...+.+++.
T Consensus 1 ~vG~~a~q~ak~~G--~~vi~~~~~~~k~~~~~~~ 33 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG--AKVIATDRSEEKLELAKEL 33 (130)
T ss_dssp HHHHHHHHHHHHTT--SEEEEEESSHHHHHHHHHT
T ss_pred ChHHHHHHHHHHcC--CEEEEEECCHHHHHHHHhh
Confidence 35778889999887 5999999999888887663
No 395
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=81.30 E-value=13 Score=26.75 Aligned_cols=82 Identities=11% Similarity=0.126 Sum_probs=46.9
Q ss_pred CCCeEEEEccc-CChhHHHHHHHcC-CCceEEEEeCCH--HHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHh
Q psy5757 29 ENSKVLEIGSG-SGYLTNMISELMN-STGQVIGIEHVP--QLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVE 102 (139)
Q Consensus 29 ~~~~iLdiG~G-~G~~~~~l~~~~~-~~~~v~~~d~~~--~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~ 102 (139)
.++.+|-.|+| ++..+..+++.+. ...+|+..+.+. +..+...+.+ ..++.++..|+.+. +.++.
T Consensus 6 ~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~---------~~~~~~~~~Dv~~~~~i~~~~ 76 (256)
T PRK07889 6 EGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIAKRL---------PEPAPVLELDVTNEEHLASLA 76 (256)
T ss_pred cCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHHHhc---------CCCCcEEeCCCCCHHHHHHHH
Confidence 45688888885 6777777777653 234787777553 3333322221 12455677777651 22221
Q ss_pred h--hccCCceeEEecCccc
Q psy5757 103 L--MMKFDRYDFLPHAPAE 119 (139)
Q Consensus 103 ~--~~~~~~~D~vi~~~~~ 119 (139)
. ....+++|+++.|...
T Consensus 77 ~~~~~~~g~iD~li~nAG~ 95 (256)
T PRK07889 77 DRVREHVDGLDGVVHSIGF 95 (256)
T ss_pred HHHHHHcCCCcEEEEcccc
Confidence 1 1134679999988753
No 396
>PRK07024 short chain dehydrogenase; Provisional
Probab=81.26 E-value=16 Score=26.10 Aligned_cols=80 Identities=8% Similarity=0.056 Sum_probs=47.5
Q ss_pred CeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--hc
Q psy5757 31 SKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL--MM 105 (139)
Q Consensus 31 ~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~--~~ 105 (139)
+++|-.|+ +|..+..+++.+. ...+|+.++.+++.++...+.+.. ..++.++..|+.+. +.+... ..
T Consensus 3 ~~vlItGa-s~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~-------~~~~~~~~~Dl~~~~~i~~~~~~~~~ 74 (257)
T PRK07024 3 LKVFITGA-SSGIGQALAREYARQGATLGLVARRTDALQAFAARLPK-------AARVSVYAADVRDADALAAAAADFIA 74 (257)
T ss_pred CEEEEEcC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccc-------CCeeEEEEcCCCCHHHHHHHHHHHHH
Confidence 45666664 6677777777662 234899999887666554443322 12677888887751 221111 11
Q ss_pred cCCceeEEecCcc
Q psy5757 106 KFDRYDFLPHAPA 118 (139)
Q Consensus 106 ~~~~~D~vi~~~~ 118 (139)
..+.+|+++.+..
T Consensus 75 ~~g~id~lv~~ag 87 (257)
T PRK07024 75 AHGLPDVVIANAG 87 (257)
T ss_pred hCCCCCEEEECCC
Confidence 2345899998875
No 397
>PRK06139 short chain dehydrogenase; Provisional
Probab=81.11 E-value=16 Score=27.63 Aligned_cols=83 Identities=8% Similarity=0.079 Sum_probs=49.4
Q ss_pred CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchh--hhHHHhh--
Q psy5757 29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIK--RIETVEL-- 103 (139)
Q Consensus 29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~--~~~~~~~-- 103 (139)
.++.+|-.|+ +|..+..+++.+. ...+|+.++-+++.++...+.+... ..++.++..|+.+ .+..+..
T Consensus 6 ~~k~vlITGA-s~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~------g~~~~~~~~Dv~d~~~v~~~~~~~ 78 (330)
T PRK06139 6 HGAVVVITGA-SSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRAL------GAEVLVVPTDVTDADQVKALATQA 78 (330)
T ss_pred CCCEEEEcCC-CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc------CCcEEEEEeeCCCHHHHHHHHHHH
Confidence 3467776665 5555666655442 2348999998888777666655441 1356667777765 1222211
Q ss_pred hccCCceeEEecCcc
Q psy5757 104 MMKFDRYDFLPHAPA 118 (139)
Q Consensus 104 ~~~~~~~D~vi~~~~ 118 (139)
....+.+|++|.|.-
T Consensus 79 ~~~~g~iD~lVnnAG 93 (330)
T PRK06139 79 ASFGGRIDVWVNNVG 93 (330)
T ss_pred HHhcCCCCEEEECCC
Confidence 112356899998875
No 398
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=81.04 E-value=19 Score=29.72 Aligned_cols=87 Identities=9% Similarity=0.033 Sum_probs=50.2
Q ss_pred CCCCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHh-hcccc--ccCCcEEEEEccchhhhHHHhh
Q psy5757 28 NENSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILH-SNARL--LTDGHIKFVALGMIKRIETVEL 103 (139)
Q Consensus 28 ~~~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~--~~~~~i~~~~~d~~~~~~~~~~ 103 (139)
+.++.+|-.| |+|.++..+++.+ ....+|+++..+++......+.+.. .+... ....+++++.+|+.+ ...+..
T Consensus 78 ~~gKvVLVTG-ATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD-~esI~~ 155 (576)
T PLN03209 78 KDEDLAFVAG-ATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEK-PDQIGP 155 (576)
T ss_pred CCCCEEEEEC-CCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCC-HHHHHH
Confidence 4566777665 4677788777765 2234788888887665544333221 10000 001358889999876 333322
Q ss_pred hccCCceeEEecCcc
Q psy5757 104 MMKFDRYDFLPHAPA 118 (139)
Q Consensus 104 ~~~~~~~D~vi~~~~ 118 (139)
..+.+|+||++..
T Consensus 156 --aLggiDiVVn~AG 168 (576)
T PLN03209 156 --ALGNASVVICCIG 168 (576)
T ss_pred --HhcCCCEEEEccc
Confidence 2345899888754
No 399
>PRK08264 short chain dehydrogenase; Validated
Probab=80.83 E-value=13 Score=26.08 Aligned_cols=75 Identities=12% Similarity=0.115 Sum_probs=45.7
Q ss_pred CCCeEEEEcccCChhHHHHHHHcCC-Cc-eEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhhh
Q psy5757 29 ENSKVLEIGSGSGYLTNMISELMNS-TG-QVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVELM 104 (139)
Q Consensus 29 ~~~~iLdiG~G~G~~~~~l~~~~~~-~~-~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~ 104 (139)
.++++|-.| |+|..+..+++.+.. .. +|+.++-++...+. . ..+++++..|+.+. +..+..
T Consensus 5 ~~~~vlItG-gsg~iG~~la~~l~~~G~~~V~~~~r~~~~~~~------~-------~~~~~~~~~D~~~~~~~~~~~~- 69 (238)
T PRK08264 5 KGKVVLVTG-ANRGIGRAFVEQLLARGAAKVYAAARDPESVTD------L-------GPRVVPLQLDVTDPASVAAAAE- 69 (238)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCcccEEEEecChhhhhh------c-------CCceEEEEecCCCHHHHHHHHH-
Confidence 446777776 577777777776632 33 78888776543322 1 14677888887651 222211
Q ss_pred ccCCceeEEecCccc
Q psy5757 105 MKFDRYDFLPHAPAE 119 (139)
Q Consensus 105 ~~~~~~D~vi~~~~~ 119 (139)
....+|++|++...
T Consensus 70 -~~~~id~vi~~ag~ 83 (238)
T PRK08264 70 -AASDVTILVNNAGI 83 (238)
T ss_pred -hcCCCCEEEECCCc
Confidence 13458999888865
No 400
>PRK09072 short chain dehydrogenase; Provisional
Probab=80.83 E-value=18 Score=25.88 Aligned_cols=83 Identities=12% Similarity=0.210 Sum_probs=48.6
Q ss_pred CCCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhhh-
Q psy5757 29 ENSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVELM- 104 (139)
Q Consensus 29 ~~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~- 104 (139)
+++.+|-.|++ |..+..+++.+ ....+|+.++.+++.++...+.+.. ..++.++..|+.+. +..+...
T Consensus 4 ~~~~vlItG~s-~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-------~~~~~~~~~D~~d~~~~~~~~~~~ 75 (263)
T PRK09072 4 KDKRVLLTGAS-GGIGQALAEALAAAGARLLLVGRNAEKLEALAARLPY-------PGRHRWVVADLTSEAGREAVLARA 75 (263)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhc-------CCceEEEEccCCCHHHHHHHHHHH
Confidence 34567777654 55666655544 2234899999887776665544422 24677888887651 1111111
Q ss_pred ccCCceeEEecCccc
Q psy5757 105 MKFDRYDFLPHAPAE 119 (139)
Q Consensus 105 ~~~~~~D~vi~~~~~ 119 (139)
...+.+|+++.+...
T Consensus 76 ~~~~~id~lv~~ag~ 90 (263)
T PRK09072 76 REMGGINVLINNAGV 90 (263)
T ss_pred HhcCCCCEEEECCCC
Confidence 113568999888653
No 401
>PRK05650 short chain dehydrogenase; Provisional
Probab=80.54 E-value=19 Score=25.93 Aligned_cols=80 Identities=9% Similarity=0.056 Sum_probs=46.4
Q ss_pred eEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--hcc
Q psy5757 32 KVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL--MMK 106 (139)
Q Consensus 32 ~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~--~~~ 106 (139)
++|-.| |+|..+..+++.+- ...+|+.++.+++..+.+...+... ..++.++..|+.+. +..+.. ...
T Consensus 2 ~vlVtG-asggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~------~~~~~~~~~D~~~~~~~~~~~~~i~~~ 74 (270)
T PRK05650 2 RVMITG-AASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREA------GGDGFYQRCDVRDYSQLTALAQACEEK 74 (270)
T ss_pred EEEEec-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 466555 46666666666552 2348888888876666555544431 14577778887651 111111 112
Q ss_pred CCceeEEecCcc
Q psy5757 107 FDRYDFLPHAPA 118 (139)
Q Consensus 107 ~~~~D~vi~~~~ 118 (139)
.+.+|++|.+..
T Consensus 75 ~~~id~lI~~ag 86 (270)
T PRK05650 75 WGGIDVIVNNAG 86 (270)
T ss_pred cCCCCEEEECCC
Confidence 346899998875
No 402
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=80.52 E-value=20 Score=26.13 Aligned_cols=84 Identities=15% Similarity=0.089 Sum_probs=45.7
Q ss_pred CCCeEEEEccc-CChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchh--hhHHHhh-
Q psy5757 29 ENSKVLEIGSG-SGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIK--RIETVEL- 103 (139)
Q Consensus 29 ~~~~iLdiG~G-~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~--~~~~~~~- 103 (139)
.++.+|-.|++ ++..+..+++.+. ...+|+....++...+.+++.... + .....+..|+.+ ..+.+..
T Consensus 9 ~~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~~~~~~~~l~~~-----~--~~~~~~~~Dl~~~~~v~~~~~~ 81 (272)
T PRK08159 9 AGKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDALKKRVEPLAAE-----L--GAFVAGHCDVTDEASIDAVFET 81 (272)
T ss_pred cCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHHHh-----c--CCceEEecCCCCHHHHHHHHHH
Confidence 45678888886 4677777777662 234776665443222323222222 1 223456677765 1222211
Q ss_pred -hccCCceeEEecCccc
Q psy5757 104 -MMKFDRYDFLPHAPAE 119 (139)
Q Consensus 104 -~~~~~~~D~vi~~~~~ 119 (139)
....+.+|+++.|...
T Consensus 82 ~~~~~g~iD~lv~nAG~ 98 (272)
T PRK08159 82 LEKKWGKLDFVVHAIGF 98 (272)
T ss_pred HHHhcCCCcEEEECCcc
Confidence 1234679999998754
No 403
>KOG1253|consensus
Probab=80.50 E-value=1.2 Score=35.73 Aligned_cols=83 Identities=17% Similarity=0.116 Sum_probs=59.9
Q ss_pred CCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757 28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMK 106 (139)
Q Consensus 28 ~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 106 (139)
.++.+|||.=|++|.-++..+...+--.++++.|.++..+..-+++... +. .+.++..+.|+...+ +.....
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v-----~~ive~~~~DA~~lM--~~~~~~ 180 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGV-----EDIVEPHHSDANVLM--YEHPMV 180 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCc-----hhhcccccchHHHHH--Hhcccc
Confidence 4556899999999999999999886455899999999999999999887 33 344556666754322 222333
Q ss_pred CCceeEEecCc
Q psy5757 107 FDRYDFLPHAP 117 (139)
Q Consensus 107 ~~~~D~vi~~~ 117 (139)
...||+|=..|
T Consensus 181 ~~~FDvIDLDP 191 (525)
T KOG1253|consen 181 AKFFDVIDLDP 191 (525)
T ss_pred ccccceEecCC
Confidence 46788885544
No 404
>PRK05876 short chain dehydrogenase; Provisional
Probab=80.42 E-value=20 Score=26.13 Aligned_cols=84 Identities=6% Similarity=-0.009 Sum_probs=49.3
Q ss_pred CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--
Q psy5757 29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL-- 103 (139)
Q Consensus 29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~-- 103 (139)
.++.+|-.|+ +|..+..+++.+. ...+|+..+.+++.++.+.+.+... ..++.++..|+.+. +..+..
T Consensus 5 ~~k~vlVTGa-s~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~------~~~~~~~~~Dv~d~~~v~~~~~~~ 77 (275)
T PRK05876 5 PGRGAVITGG-ASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAE------GFDVHGVMCDVRHREEVTHLADEA 77 (275)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCeEEEEeCCCCCHHHHHHHHHHH
Confidence 4566776665 5666666666552 2348888888877666555444330 13577778887651 111111
Q ss_pred hccCCceeEEecCccc
Q psy5757 104 MMKFDRYDFLPHAPAE 119 (139)
Q Consensus 104 ~~~~~~~D~vi~~~~~ 119 (139)
....+.+|++|.|...
T Consensus 78 ~~~~g~id~li~nAg~ 93 (275)
T PRK05876 78 FRLLGHVDVVFSNAGI 93 (275)
T ss_pred HHHcCCCCEEEECCCc
Confidence 1123568999988753
No 405
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=80.25 E-value=19 Score=25.68 Aligned_cols=84 Identities=11% Similarity=0.165 Sum_probs=48.5
Q ss_pred CCCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHh--h
Q psy5757 29 ENSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVE--L 103 (139)
Q Consensus 29 ~~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~--~ 103 (139)
.++.+|-.|+ +|..+..+++.+ ....+++.++.+++..+.+...+... ..++.++..|+.+. +.++. .
T Consensus 10 ~~k~vlVtG~-s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~------~~~~~~~~~D~~~~~~i~~~~~~~ 82 (255)
T PRK06113 10 DGKCAIITGA-GAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQL------GGQAFACRCDITSEQELSALADFA 82 (255)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhc------CCcEEEEEccCCCHHHHHHHHHHH
Confidence 4678888885 455555555544 22347888887777666555544330 13566777887752 11111 1
Q ss_pred hccCCceeEEecCccc
Q psy5757 104 MMKFDRYDFLPHAPAE 119 (139)
Q Consensus 104 ~~~~~~~D~vi~~~~~ 119 (139)
....+.+|+++.+...
T Consensus 83 ~~~~~~~d~li~~ag~ 98 (255)
T PRK06113 83 LSKLGKVDILVNNAGG 98 (255)
T ss_pred HHHcCCCCEEEECCCC
Confidence 1123568999888763
No 406
>PRK07576 short chain dehydrogenase; Provisional
Probab=80.05 E-value=20 Score=25.84 Aligned_cols=83 Identities=14% Similarity=0.161 Sum_probs=48.8
Q ss_pred CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhhh-
Q psy5757 29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVELM- 104 (139)
Q Consensus 29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~- 104 (139)
+++++|-.| |+|..+..+++.+. ...+|+.++.+++.++...+.+... ..++.++..|+.+. +..+...
T Consensus 8 ~~k~ilItG-asggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~Dv~~~~~i~~~~~~~ 80 (264)
T PRK07576 8 AGKNVVVVG-GTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQA------GPEGLGVSADVRDYAAVEAAFAQI 80 (264)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHh------CCceEEEECCCCCHHHHHHHHHHH
Confidence 456787776 56677776666552 2348999998877665554444331 13566777787651 1111111
Q ss_pred -ccCCceeEEecCcc
Q psy5757 105 -MKFDRYDFLPHAPA 118 (139)
Q Consensus 105 -~~~~~~D~vi~~~~ 118 (139)
.....+|++|.+..
T Consensus 81 ~~~~~~iD~vi~~ag 95 (264)
T PRK07576 81 ADEFGPIDVLVSGAA 95 (264)
T ss_pred HHHcCCCCEEEECCC
Confidence 12346899998764
No 407
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=79.95 E-value=19 Score=28.16 Aligned_cols=39 Identities=15% Similarity=0.275 Sum_probs=28.0
Q ss_pred eEEEEcccCChhHHHHHHHcCC-CceEEEEeCCHHHHHHHHH
Q psy5757 32 KVLEIGSGSGYLTNMISELMNS-TGQVIGIEHVPQLVNSSIQ 72 (139)
Q Consensus 32 ~iLdiG~G~G~~~~~l~~~~~~-~~~v~~~d~~~~~~~~a~~ 72 (139)
+|+-+|+ |..+..+++.+.. ...++.+|.+++.++.+++
T Consensus 2 ~viIiG~--G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~ 41 (453)
T PRK09496 2 KIIIVGA--GQVGYTLAENLSGENNDVTVIDTDEERLRRLQD 41 (453)
T ss_pred EEEEECC--CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHh
Confidence 5666655 7888888886632 3489999999887776654
No 408
>PRK07677 short chain dehydrogenase; Provisional
Probab=79.91 E-value=19 Score=25.58 Aligned_cols=81 Identities=16% Similarity=0.183 Sum_probs=46.7
Q ss_pred CeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchh--hhHHHhh--hc
Q psy5757 31 SKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIK--RIETVEL--MM 105 (139)
Q Consensus 31 ~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~--~~~~~~~--~~ 105 (139)
+.+|-.|+ +|..+..+++.+. ...+|+.++.++...+.+.+.+... ..++.++..|+.+ .+.++.. ..
T Consensus 2 k~~lItG~-s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~~~~~ 74 (252)
T PRK07677 2 KVVIITGG-SSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQF------PGQVLTVQMDVRNPEDVQKMVEQIDE 74 (252)
T ss_pred CEEEEeCC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCcEEEEEecCCCHHHHHHHHHHHHH
Confidence 56776665 4556666655542 2348889998876666555544330 1467778788765 1222111 11
Q ss_pred cCCceeEEecCcc
Q psy5757 106 KFDRYDFLPHAPA 118 (139)
Q Consensus 106 ~~~~~D~vi~~~~ 118 (139)
..+.+|+++.+..
T Consensus 75 ~~~~id~lI~~ag 87 (252)
T PRK07677 75 KFGRIDALINNAA 87 (252)
T ss_pred HhCCccEEEECCC
Confidence 2356899998764
No 409
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=79.87 E-value=20 Score=25.80 Aligned_cols=62 Identities=15% Similarity=0.088 Sum_probs=41.2
Q ss_pred CCCCeEEEEcccCC--hhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccc
Q psy5757 28 NENSKVLEIGSGSG--YLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGM 94 (139)
Q Consensus 28 ~~~~~iLdiG~G~G--~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~ 94 (139)
.+.+.+++..|+.| ..+..|+-.-. -.++++++-.+++.....++.+.. +. .+.++|++++.
T Consensus 40 ~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~-----~~~vEfvvg~~ 105 (218)
T PF07279_consen 40 WNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGL-----SDVVEFVVGEA 105 (218)
T ss_pred ccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccc-----cccceEEecCC
Confidence 34568899976644 34555544331 256999999998888888887766 44 24467777763
No 410
>PRK07831 short chain dehydrogenase; Provisional
Probab=79.78 E-value=20 Score=25.67 Aligned_cols=88 Identities=9% Similarity=0.072 Sum_probs=49.7
Q ss_pred CCCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhhh
Q psy5757 28 NENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVELM 104 (139)
Q Consensus 28 ~~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~ 104 (139)
..++++|-.|+.....+..+++.+. ...+|+.++.++..++.+.+.+.... ...++.++..|+.+. +..+...
T Consensus 15 ~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Dl~~~~~~~~~~~~ 90 (262)
T PRK07831 15 LAGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAEL----GLGRVEAVVCDVTSEAQVDALIDA 90 (262)
T ss_pred cCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhc----CCceEEEEEccCCCHHHHHHHHHH
Confidence 3467788877532244555554441 23378888888776666655543311 114677888887651 2221111
Q ss_pred --ccCCceeEEecCccc
Q psy5757 105 --MKFDRYDFLPHAPAE 119 (139)
Q Consensus 105 --~~~~~~D~vi~~~~~ 119 (139)
...+.+|+++.+...
T Consensus 91 ~~~~~g~id~li~~ag~ 107 (262)
T PRK07831 91 AVERLGRLDVLVNNAGL 107 (262)
T ss_pred HHHHcCCCCEEEECCCC
Confidence 123568999888864
No 411
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=79.59 E-value=5.7 Score=29.06 Aligned_cols=92 Identities=13% Similarity=0.147 Sum_probs=49.4
Q ss_pred HHHHHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccch
Q psy5757 16 ILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMI 95 (139)
Q Consensus 16 ~~~~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~ 95 (139)
....++.+......+. +..-+||-.++..+.+.-. +.+.+|+.++-.+..++++.. ..++++.+.|..
T Consensus 46 l~~yl~~v~~~n~~~~--l~~YPGSP~ia~~llR~qD---rl~l~ELHp~d~~~L~~~~~~-------~~~v~v~~~DG~ 113 (245)
T PF04378_consen 46 LQPYLDAVRALNPDGE--LRFYPGSPAIAARLLREQD---RLVLFELHPQDFEALKKNFRR-------DRRVRVHHRDGY 113 (245)
T ss_dssp GHHHHHHHHHHSSSSS----EEE-HHHHHHHHS-TTS---EEEEE--SHHHHHHHTTS--T-------TS-EEEE-S-HH
T ss_pred HHHHHHHHHHhccCCC--cCcCCCCHHHHHHhCCccc---eEEEEecCchHHHHHHHHhcc-------CCccEEEeCchh
Confidence 4445555542222222 6677888888888877665 999999999999988887766 468999999987
Q ss_pred hhhHHHhhhccCCceeEEecCccccc
Q psy5757 96 KRIETVELMMKFDRYDFLPHAPAESW 121 (139)
Q Consensus 96 ~~~~~~~~~~~~~~~D~vi~~~~~~~ 121 (139)
+++..+. + +..+=-+|+..|++.-
T Consensus 114 ~~l~all-P-P~~rRglVLIDPpYE~ 137 (245)
T PF04378_consen 114 EGLKALL-P-PPERRGLVLIDPPYEQ 137 (245)
T ss_dssp HHHHHH--S--TTS-EEEEE-----S
T ss_pred hhhhhhC-C-CCCCCeEEEECCCCCC
Confidence 7655431 1 2233467777777543
No 412
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=79.58 E-value=5.5 Score=26.99 Aligned_cols=45 Identities=18% Similarity=0.310 Sum_probs=27.5
Q ss_pred HHHHHHhcccCC-CCCeEEEEcccCChhHHHHHHHcCCCceEEEEeC
Q psy5757 17 LTYLSIIQPHLN-ENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEH 62 (139)
Q Consensus 17 ~~~~~~l~~~~~-~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~ 62 (139)
..++++...... -...|+|+|-|+|.+---|.+.+ |...++.+|-
T Consensus 15 R~~L~~a~~~v~~~~G~VlElGLGNGRTydHLRe~~-p~R~I~vfDR 60 (160)
T PF12692_consen 15 RDCLNWAAAQVAGLPGPVLELGLGNGRTYDHLREIF-PDRRIYVFDR 60 (160)
T ss_dssp HHHHHHHHHHTTT--S-EEEE--TTSHHHHHHHHH---SS-EEEEES
T ss_pred HHHHHHHHHHhcCCCCceEEeccCCCccHHHHHHhC-CCCeEEEEee
Confidence 344555543332 33589999999999999999999 4669999994
No 413
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=79.58 E-value=18 Score=25.26 Aligned_cols=82 Identities=18% Similarity=0.266 Sum_probs=47.8
Q ss_pred CCeEEEEcccCChhHHHHHHHcC-CCceEEEE-eCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--
Q psy5757 30 NSKVLEIGSGSGYLTNMISELMN-STGQVIGI-EHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL-- 103 (139)
Q Consensus 30 ~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~-d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~-- 103 (139)
++++|-.| |+|..+..+++.+- ...+++.+ +-++...+.....+... ..++.++..|+.+. +..+..
T Consensus 5 ~~~ilI~G-asg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~~~ 77 (247)
T PRK05565 5 GKVAIVTG-ASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEE------GGDAIAVKADVSSEEDVENLVEQI 77 (247)
T ss_pred CCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc------CCeEEEEECCCCCHHHHHHHHHHH
Confidence 35677766 56777777776652 23477777 77766655544444331 14678888887751 111111
Q ss_pred hccCCceeEEecCcc
Q psy5757 104 MMKFDRYDFLPHAPA 118 (139)
Q Consensus 104 ~~~~~~~D~vi~~~~ 118 (139)
......+|++|.+..
T Consensus 78 ~~~~~~id~vi~~ag 92 (247)
T PRK05565 78 VEKFGKIDILVNNAG 92 (247)
T ss_pred HHHhCCCCEEEECCC
Confidence 111235899998775
No 414
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=79.56 E-value=20 Score=25.82 Aligned_cols=84 Identities=11% Similarity=0.057 Sum_probs=43.7
Q ss_pred CCCeEEEEcc-cCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchh--hhHHHhh-
Q psy5757 29 ENSKVLEIGS-GSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIK--RIETVEL- 103 (139)
Q Consensus 29 ~~~~iLdiG~-G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~--~~~~~~~- 103 (139)
.++.+|-.|+ +++..+..+++.+. ...+|+.++......+..++.... + .....+..|+.+ .+..+..
T Consensus 5 ~~k~vlItGas~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~-----~--~~~~~~~~Dv~d~~~v~~~~~~ 77 (260)
T PRK06997 5 AGKRILITGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAE-----F--GSDLVFPCDVASDEQIDALFAS 77 (260)
T ss_pred CCcEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEEccchHHHHHHHHHHHh-----c--CCcceeeccCCCHHHHHHHHHH
Confidence 4567888887 46777777777663 234777665432212222221111 0 122345567664 1222111
Q ss_pred -hccCCceeEEecCccc
Q psy5757 104 -MMKFDRYDFLPHAPAE 119 (139)
Q Consensus 104 -~~~~~~~D~vi~~~~~ 119 (139)
...++.+|+++.|...
T Consensus 78 ~~~~~g~iD~lvnnAG~ 94 (260)
T PRK06997 78 LGQHWDGLDGLVHSIGF 94 (260)
T ss_pred HHHHhCCCcEEEEcccc
Confidence 1134679999998754
No 415
>PLN02780 ketoreductase/ oxidoreductase
Probab=79.41 E-value=24 Score=26.51 Aligned_cols=86 Identities=10% Similarity=0.063 Sum_probs=47.7
Q ss_pred CCCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchh----hhHHHhh
Q psy5757 29 ENSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIK----RIETVEL 103 (139)
Q Consensus 29 ~~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~----~~~~~~~ 103 (139)
.++.+|-.|+ +++.+..+++.+ ....+|+.++.+++.++...+.+.... +..++..+..|+.+ ....+..
T Consensus 52 ~g~~~lITGA-s~GIG~alA~~La~~G~~Vil~~R~~~~l~~~~~~l~~~~----~~~~~~~~~~Dl~~~~~~~~~~l~~ 126 (320)
T PLN02780 52 YGSWALVTGP-TDGIGKGFAFQLARKGLNLVLVARNPDKLKDVSDSIQSKY----SKTQIKTVVVDFSGDIDEGVKRIKE 126 (320)
T ss_pred cCCEEEEeCC-CcHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHC----CCcEEEEEEEECCCCcHHHHHHHHH
Confidence 3567777775 455556665555 223489999999888777666554310 01345566666542 1222222
Q ss_pred hccCCceeEEecCccc
Q psy5757 104 MMKFDRYDFLPHAPAE 119 (139)
Q Consensus 104 ~~~~~~~D~vi~~~~~ 119 (139)
......+|+++.|...
T Consensus 127 ~~~~~didilVnnAG~ 142 (320)
T PLN02780 127 TIEGLDVGVLINNVGV 142 (320)
T ss_pred HhcCCCccEEEEecCc
Confidence 2122235688877643
No 416
>PRK13699 putative methylase; Provisional
Probab=79.33 E-value=0.6 Score=33.61 Aligned_cols=28 Identities=18% Similarity=0.285 Sum_probs=20.8
Q ss_pred EEEEccchhhhHHHhhhccCCceeEEecCccc
Q psy5757 88 KFVALGMIKRIETVELMMKFDRYDFLPHAPAE 119 (139)
Q Consensus 88 ~~~~~d~~~~~~~~~~~~~~~~~D~vi~~~~~ 119 (139)
+++++|..+.+. ..+.+++|+|+..|++
T Consensus 3 ~l~~gD~le~l~----~lpd~SVDLIiTDPPY 30 (227)
T PRK13699 3 RFILGNCIDVMA----RFPDNAVDFILTDPPY 30 (227)
T ss_pred eEEechHHHHHH----hCCccccceEEeCCCc
Confidence 467888766444 3467889999999986
No 417
>PRK07478 short chain dehydrogenase; Provisional
Probab=79.04 E-value=20 Score=25.42 Aligned_cols=84 Identities=11% Similarity=0.116 Sum_probs=48.9
Q ss_pred CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--
Q psy5757 29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL-- 103 (139)
Q Consensus 29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~-- 103 (139)
.++.+|-.|+ +|..+..+++.+. ...+|+.++.+++.++.+.+.+... ..++.++..|+.+. +..+..
T Consensus 5 ~~k~~lItGa-s~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~~~ 77 (254)
T PRK07478 5 NGKVAIITGA-SSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAE------GGEAVALAGDVRDEAYAKALVALA 77 (254)
T ss_pred CCCEEEEeCC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCcEEEEEcCCCCHHHHHHHHHHH
Confidence 3456776654 4566666666552 2348888888877766665555431 13567777787652 111111
Q ss_pred hccCCceeEEecCccc
Q psy5757 104 MMKFDRYDFLPHAPAE 119 (139)
Q Consensus 104 ~~~~~~~D~vi~~~~~ 119 (139)
....+.+|+++.+...
T Consensus 78 ~~~~~~id~li~~ag~ 93 (254)
T PRK07478 78 VERFGGLDIAFNNAGT 93 (254)
T ss_pred HHhcCCCCEEEECCCC
Confidence 1123578999988753
No 418
>PRK06196 oxidoreductase; Provisional
Probab=79.01 E-value=19 Score=26.76 Aligned_cols=80 Identities=14% Similarity=0.172 Sum_probs=47.4
Q ss_pred CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--
Q psy5757 29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL-- 103 (139)
Q Consensus 29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~-- 103 (139)
.++.+|-.|+ +|..+..+++.+. ...+|+.++.+++..+.+.+.+ .++.++..|+.+. +..+..
T Consensus 25 ~~k~vlITGa-sggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l----------~~v~~~~~Dl~d~~~v~~~~~~~ 93 (315)
T PRK06196 25 SGKTAIVTGG-YSGLGLETTRALAQAGAHVIVPARRPDVAREALAGI----------DGVEVVMLDLADLESVRAFAERF 93 (315)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh----------hhCeEEEccCCCHHHHHHHHHHH
Confidence 4577887774 5667777776552 2348888888876554443322 2356777777651 222111
Q ss_pred hccCCceeEEecCccc
Q psy5757 104 MMKFDRYDFLPHAPAE 119 (139)
Q Consensus 104 ~~~~~~~D~vi~~~~~ 119 (139)
....+.+|++|.|...
T Consensus 94 ~~~~~~iD~li~nAg~ 109 (315)
T PRK06196 94 LDSGRRIDILINNAGV 109 (315)
T ss_pred HhcCCCCCEEEECCCC
Confidence 1123578999998753
No 419
>PRK08628 short chain dehydrogenase; Provisional
Probab=78.96 E-value=20 Score=25.42 Aligned_cols=82 Identities=13% Similarity=0.122 Sum_probs=46.0
Q ss_pred CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--
Q psy5757 29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL-- 103 (139)
Q Consensus 29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~-- 103 (139)
+++.+|-.|+ +|..+..+++.+- ...+++.+..++...+.. +.+... ..++.++..|+.+. +..+..
T Consensus 6 ~~~~ilItGa-sggiG~~la~~l~~~G~~v~~~~r~~~~~~~~-~~~~~~------~~~~~~~~~D~~~~~~~~~~~~~~ 77 (258)
T PRK08628 6 KDKVVIVTGG-ASGIGAAISLRLAEEGAIPVIFGRSAPDDEFA-EELRAL------QPRAEFVQVDLTDDAQCRDAVEQT 77 (258)
T ss_pred CCCEEEEeCC-CChHHHHHHHHHHHcCCcEEEEcCChhhHHHH-HHHHhc------CCceEEEEccCCCHHHHHHHHHHH
Confidence 4567777765 5666777666552 234777777776655322 222220 24678888887751 111111
Q ss_pred hccCCceeEEecCcc
Q psy5757 104 MMKFDRYDFLPHAPA 118 (139)
Q Consensus 104 ~~~~~~~D~vi~~~~ 118 (139)
....+.+|++|.+..
T Consensus 78 ~~~~~~id~vi~~ag 92 (258)
T PRK08628 78 VAKFGRIDGLVNNAG 92 (258)
T ss_pred HHhcCCCCEEEECCc
Confidence 112346899988875
No 420
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=78.92 E-value=20 Score=25.38 Aligned_cols=84 Identities=12% Similarity=0.074 Sum_probs=49.9
Q ss_pred CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--
Q psy5757 29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL-- 103 (139)
Q Consensus 29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~-- 103 (139)
+++.+|-. .|+|..+..+++.+- ...+|+.++.++...+.+.+.+... ..++.++..|+.+. +.+...
T Consensus 6 ~~~~vlIt-Gasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~Dl~~~~~~~~~~~~~ 78 (262)
T PRK13394 6 NGKTAVVT-GAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKA------GGKAIGVAMDVTNEDAVNAGIDKV 78 (262)
T ss_pred CCCEEEEE-CCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhc------CceEEEEECCCCCHHHHHHHHHHH
Confidence 34667755 456677777666552 2348889998887666665555441 13577788887751 111111
Q ss_pred hccCCceeEEecCccc
Q psy5757 104 MMKFDRYDFLPHAPAE 119 (139)
Q Consensus 104 ~~~~~~~D~vi~~~~~ 119 (139)
....+.+|++|++...
T Consensus 79 ~~~~~~~d~vi~~ag~ 94 (262)
T PRK13394 79 AERFGSVDILVSNAGI 94 (262)
T ss_pred HHHcCCCCEEEECCcc
Confidence 1123458999888764
No 421
>PRK06482 short chain dehydrogenase; Provisional
Probab=78.68 E-value=21 Score=25.72 Aligned_cols=78 Identities=12% Similarity=0.138 Sum_probs=45.7
Q ss_pred CeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--hc
Q psy5757 31 SKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL--MM 105 (139)
Q Consensus 31 ~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~--~~ 105 (139)
+.+|-.| |+|..+..+++.+. ...+|+.++-+++.++..++.. ..++.++..|+.+. +.++.. ..
T Consensus 3 k~vlVtG-asg~IG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~---------~~~~~~~~~D~~~~~~~~~~~~~~~~ 72 (276)
T PRK06482 3 KTWFITG-ASSGFGRGMTERLLARGDRVAATVRRPDALDDLKARY---------GDRLWVLQLDVTDSAAVRAVVDRAFA 72 (276)
T ss_pred CEEEEec-CCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc---------cCceEEEEccCCCHHHHHHHHHHHHH
Confidence 3566555 47778888777662 2347888888876554433321 14677888887762 111111 11
Q ss_pred cCCceeEEecCcc
Q psy5757 106 KFDRYDFLPHAPA 118 (139)
Q Consensus 106 ~~~~~D~vi~~~~ 118 (139)
....+|++|.+..
T Consensus 73 ~~~~id~vi~~ag 85 (276)
T PRK06482 73 ALGRIDVVVSNAG 85 (276)
T ss_pred HcCCCCEEEECCC
Confidence 2346799988764
No 422
>PRK05717 oxidoreductase; Validated
Probab=78.56 E-value=21 Score=25.37 Aligned_cols=82 Identities=15% Similarity=0.131 Sum_probs=46.9
Q ss_pred CCCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHH-h-
Q psy5757 28 NENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETV-E- 102 (139)
Q Consensus 28 ~~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~-~- 102 (139)
..++.+|-.| |+|..+..+++.+- ...+|+.++.++.......+.. ..++.++..|+.+. +..+ .
T Consensus 8 ~~~k~vlItG-~sg~IG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~---------~~~~~~~~~Dl~~~~~~~~~~~~ 77 (255)
T PRK05717 8 HNGRVALVTG-AARGIGLGIAAWLIAEGWQVVLADLDRERGSKVAKAL---------GENAWFIAMDVADEAQVAAGVAE 77 (255)
T ss_pred cCCCEEEEeC-CcchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHc---------CCceEEEEccCCCHHHHHHHHHH
Confidence 3456777665 45767777766662 2348888888765433322211 13567788887762 1111 0
Q ss_pred hhccCCceeEEecCccc
Q psy5757 103 LMMKFDRYDFLPHAPAE 119 (139)
Q Consensus 103 ~~~~~~~~D~vi~~~~~ 119 (139)
.....+.+|++|.+...
T Consensus 78 ~~~~~g~id~li~~ag~ 94 (255)
T PRK05717 78 VLGQFGRLDALVCNAAI 94 (255)
T ss_pred HHHHhCCCCEEEECCCc
Confidence 11123468999988764
No 423
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=78.56 E-value=14 Score=27.29 Aligned_cols=80 Identities=13% Similarity=0.193 Sum_probs=44.0
Q ss_pred CCeEEEEcccCChhHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhccC
Q psy5757 30 NSKVLEIGSGSGYLTNMISELMNS-TGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMKF 107 (139)
Q Consensus 30 ~~~iLdiG~G~G~~~~~l~~~~~~-~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 107 (139)
+++||-.| |+|..+..+++.+-. ..+|+++..++............ .. .++++++.+|+.+. ..+..- .
T Consensus 4 ~~~ilVtG-atGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~-----~~~~~~~~~Dl~~~-~~~~~~--~ 74 (322)
T PLN02662 4 GKVVCVTG-ASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGA-----KERLHLFKANLLEE-GSFDSV--V 74 (322)
T ss_pred CCEEEEEC-ChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCC-----CCceEEEeccccCc-chHHHH--H
Confidence 46676655 578888888877622 23777777664332222211111 10 24788898997752 111111 2
Q ss_pred CceeEEecCcc
Q psy5757 108 DRYDFLPHAPA 118 (139)
Q Consensus 108 ~~~D~vi~~~~ 118 (139)
+.+|+|++...
T Consensus 75 ~~~d~Vih~A~ 85 (322)
T PLN02662 75 DGCEGVFHTAS 85 (322)
T ss_pred cCCCEEEEeCC
Confidence 34788877764
No 424
>PRK07035 short chain dehydrogenase; Provisional
Probab=78.52 E-value=21 Score=25.28 Aligned_cols=83 Identities=17% Similarity=0.179 Sum_probs=46.6
Q ss_pred CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--
Q psy5757 29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL-- 103 (139)
Q Consensus 29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~-- 103 (139)
+++.+|-.|++ |..+..+++.+. ...+|+.++.++..++...+.+... ..++.++..|+.+. +..+..
T Consensus 7 ~~k~vlItGas-~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~~~ 79 (252)
T PRK07035 7 TGKIALVTGAS-RGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAA------GGKAEALACHIGEMEQIDALFAHI 79 (252)
T ss_pred CCCEEEEECCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCeEEEEEcCCCCHHHHHHHHHHH
Confidence 34677777755 445555555442 2338999998877666555554431 13456667776541 111111
Q ss_pred hccCCceeEEecCcc
Q psy5757 104 MMKFDRYDFLPHAPA 118 (139)
Q Consensus 104 ~~~~~~~D~vi~~~~ 118 (139)
......+|+++.+..
T Consensus 80 ~~~~~~id~li~~ag 94 (252)
T PRK07035 80 RERHGRLDILVNNAA 94 (252)
T ss_pred HHHcCCCCEEEECCC
Confidence 112346899998775
No 425
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=78.50 E-value=1 Score=34.93 Aligned_cols=41 Identities=17% Similarity=0.325 Sum_probs=28.8
Q ss_pred CCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHH
Q psy5757 29 ENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNS 69 (139)
Q Consensus 29 ~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~ 69 (139)
..++|||+|.|.|....++-..++.--.++-+|.|+..-+.
T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV 153 (484)
T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKV 153 (484)
T ss_pred CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHH
Confidence 44679999999998777666666433367788888654433
No 426
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=78.50 E-value=15 Score=28.57 Aligned_cols=82 Identities=11% Similarity=0.165 Sum_probs=46.0
Q ss_pred CCCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHH--HHHHHHhhccccccCCcEEEEEccchhhhHHHhhh
Q psy5757 28 NENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNS--SIQNILHSNARLLTDGHIKFVALGMIKRIETVELM 104 (139)
Q Consensus 28 ~~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~--a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~ 104 (139)
..+++||-.| |+|..+..+++.+- ..-+|+++.-++..... ........ ..+++++.+|+.+ ...+...
T Consensus 58 ~~~~kVLVtG-atG~IG~~l~~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~~~------~~~v~~v~~Dl~d-~~~l~~~ 129 (390)
T PLN02657 58 PKDVTVLVVG-ATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDTKKE------LPGAEVVFGDVTD-ADSLRKV 129 (390)
T ss_pred CCCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEEechhhccccchhhHHhhh------cCCceEEEeeCCC-HHHHHHH
Confidence 4567888776 68888888877652 22378888766533211 01111110 2467888999876 2222111
Q ss_pred ccC--CceeEEecCc
Q psy5757 105 MKF--DRYDFLPHAP 117 (139)
Q Consensus 105 ~~~--~~~D~vi~~~ 117 (139)
... ..+|+|+++.
T Consensus 130 ~~~~~~~~D~Vi~~a 144 (390)
T PLN02657 130 LFSEGDPVDVVVSCL 144 (390)
T ss_pred HHHhCCCCcEEEECC
Confidence 111 1589998754
No 427
>PRK09186 flagellin modification protein A; Provisional
Probab=78.03 E-value=22 Score=25.18 Aligned_cols=84 Identities=14% Similarity=0.266 Sum_probs=49.2
Q ss_pred CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhhh-
Q psy5757 29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVELM- 104 (139)
Q Consensus 29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~- 104 (139)
+++++|-.|+ +|..+..+++.+. ...+++.+..+++.++.+.+.+... .....+.++..|+.+. +..+...
T Consensus 3 ~~k~vlItGa-s~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~----~~~~~~~~~~~Dl~d~~~~~~~~~~~ 77 (256)
T PRK09186 3 KGKTILITGA-GGLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKE----FKSKKLSLVELDITDQESLEEFLSKS 77 (256)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhh----cCCCceeEEEecCCCHHHHHHHHHHH
Confidence 3567777775 4566777666652 2348888888877766665555331 0123566777887651 2221111
Q ss_pred -ccCCceeEEecCc
Q psy5757 105 -MKFDRYDFLPHAP 117 (139)
Q Consensus 105 -~~~~~~D~vi~~~ 117 (139)
...+.+|+++.+.
T Consensus 78 ~~~~~~id~vi~~A 91 (256)
T PRK09186 78 AEKYGKIDGAVNCA 91 (256)
T ss_pred HHHcCCccEEEECC
Confidence 1234589999886
No 428
>KOG0022|consensus
Probab=77.89 E-value=12 Score=28.77 Aligned_cols=47 Identities=17% Similarity=0.250 Sum_probs=34.0
Q ss_pred CCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHH
Q psy5757 27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQN 73 (139)
Q Consensus 27 ~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~ 73 (139)
+.+|..+.-+|.|.=.++...-.+..-.++++++|+++...+.|++.
T Consensus 190 v~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~f 236 (375)
T KOG0022|consen 190 VEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEF 236 (375)
T ss_pred cCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhc
Confidence 67888888888875554444433332245999999999999988775
No 429
>PF05575 V_cholerae_RfbT: Vibrio cholerae RfbT protein; InterPro: IPR008890 This family consists of several RfbT proteins from Vibrio cholerae. It has been found that genetic alteration of the rfbT gene is responsible for serotype conversion of V. cholerae O1 [] and determines the difference between the Ogawa and Inaba serotypes, in that the presence of rfbT is sufficient for Inaba-to-Ogawa serotype conversion [].
Probab=77.74 E-value=3.8 Score=28.54 Aligned_cols=57 Identities=21% Similarity=0.376 Sum_probs=44.4
Q ss_pred HHHHhcccCCCCCeEEEEcccCChhHHHHHHHcCCCceEEEEeCCHHHHHHHHHHHHh
Q psy5757 19 YLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH 76 (139)
Q Consensus 19 ~~~~l~~~~~~~~~iLdiG~G~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~~~~~ 76 (139)
+..|+..+-+.+...+|+|+..|.+.--.++... +++++++|.-.+|-...+.+.+.
T Consensus 69 mrhwivnhckhdttyidiganvgtfcgiaarhit-qgkiiaiepltemensirmnvql 125 (286)
T PF05575_consen 69 MRHWIVNHCKHDTTYIDIGANVGTFCGIAARHIT-QGKIIAIEPLTEMENSIRMNVQL 125 (286)
T ss_pred hhHhhhhhccCCceEEEeccccccchhhhhhhcc-cCceEEEechhhhhhheeeeeee
Confidence 4556665556777899999999999888888884 77999999887777666666554
No 430
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=77.59 E-value=21 Score=24.89 Aligned_cols=82 Identities=16% Similarity=0.083 Sum_probs=47.5
Q ss_pred CCCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--
Q psy5757 29 ENSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL-- 103 (139)
Q Consensus 29 ~~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~-- 103 (139)
.+++++-.|++ |..+..+++.+ ....+|++.+-+++..+.+.+.... ..+++++..|..+. +.++..
T Consensus 4 ~~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-------~~~~~~~~~Dl~~~~~~~~~~~~~ 75 (238)
T PRK05786 4 KGKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSK-------YGNIHYVVGDVSSTESARNVIEKA 75 (238)
T ss_pred CCcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh-------cCCeEEEECCCCCHHHHHHHHHHH
Confidence 35678888764 66666666655 2234899999887665554333322 13677888887752 111111
Q ss_pred hccCCceeEEecCcc
Q psy5757 104 MMKFDRYDFLPHAPA 118 (139)
Q Consensus 104 ~~~~~~~D~vi~~~~ 118 (139)
....+.+|.++.+..
T Consensus 76 ~~~~~~id~ii~~ag 90 (238)
T PRK05786 76 AKVLNAIDGLVVTVG 90 (238)
T ss_pred HHHhCCCCEEEEcCC
Confidence 111345788877764
No 431
>PLN02427 UDP-apiose/xylose synthase
Probab=77.57 E-value=11 Score=28.88 Aligned_cols=81 Identities=12% Similarity=0.206 Sum_probs=46.4
Q ss_pred CCCeEEEEcccCChhHHHHHHHcCCC--ceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757 29 ENSKVLEIGSGSGYLTNMISELMNST--GQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMK 106 (139)
Q Consensus 29 ~~~~iLdiG~G~G~~~~~l~~~~~~~--~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 106 (139)
+.++||-. -|+|..+..+++.+-.+ .+|++++.++.............. ..+++++.+|+.+ ...+...
T Consensus 13 ~~~~VlVT-GgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~-----~~~~~~~~~Dl~d-~~~l~~~-- 83 (386)
T PLN02427 13 KPLTICMI-GAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPW-----SGRIQFHRINIKH-DSRLEGL-- 83 (386)
T ss_pred cCcEEEEE-CCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccC-----CCCeEEEEcCCCC-hHHHHHH--
Confidence 44678754 57899999888877332 379999876543322111100000 1468899999876 2222111
Q ss_pred CCceeEEecCcc
Q psy5757 107 FDRYDFLPHAPA 118 (139)
Q Consensus 107 ~~~~D~vi~~~~ 118 (139)
...+|+||....
T Consensus 84 ~~~~d~ViHlAa 95 (386)
T PLN02427 84 IKMADLTINLAA 95 (386)
T ss_pred hhcCCEEEEccc
Confidence 223788877664
No 432
>PRK08862 short chain dehydrogenase; Provisional
Probab=77.47 E-value=23 Score=25.10 Aligned_cols=83 Identities=17% Similarity=0.115 Sum_probs=47.0
Q ss_pred CCCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchh--hhHHHhh--
Q psy5757 29 ENSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIK--RIETVEL-- 103 (139)
Q Consensus 29 ~~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~--~~~~~~~-- 103 (139)
.++.+|-.|++.| .+..+++.+ ....+|+.+..+++.++.+.+.+.. . ..++.....|..+ .+.++..
T Consensus 4 ~~k~~lVtGas~G-IG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~-----~-~~~~~~~~~D~~~~~~~~~~~~~~ 76 (227)
T PRK08862 4 KSSIILITSAGSV-LGRTISCHFARLGATLILCDQDQSALKDTYEQCSA-----L-TDNVYSFQLKDFSQESIRHLFDAI 76 (227)
T ss_pred CCeEEEEECCccH-HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHh-----c-CCCeEEEEccCCCHHHHHHHHHHH
Confidence 3567887777765 344444444 2234888888888777766555544 1 1234455555544 1222111
Q ss_pred hccCC-ceeEEecCcc
Q psy5757 104 MMKFD-RYDFLPHAPA 118 (139)
Q Consensus 104 ~~~~~-~~D~vi~~~~ 118 (139)
....+ .+|+++.|..
T Consensus 77 ~~~~g~~iD~li~nag 92 (227)
T PRK08862 77 EQQFNRAPDVLVNNWT 92 (227)
T ss_pred HHHhCCCCCEEEECCc
Confidence 11235 7999999874
No 433
>PRK06138 short chain dehydrogenase; Provisional
Probab=77.27 E-value=22 Score=24.99 Aligned_cols=82 Identities=11% Similarity=0.122 Sum_probs=47.6
Q ss_pred CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--
Q psy5757 29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL-- 103 (139)
Q Consensus 29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~-- 103 (139)
+++.+|-.|+ +|..+..+++.+- ...+++.+.-+++......+.+.. ..++.++..|+.+. +.++..
T Consensus 4 ~~k~~lItG~-sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~-------~~~~~~~~~D~~~~~~~~~~~~~i 75 (252)
T PRK06138 4 AGRVAIVTGA-GSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIAA-------GGRAFARQGDVGSAEAVEALVDFV 75 (252)
T ss_pred CCcEEEEeCC-CchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHhc-------CCeEEEEEcCCCCHHHHHHHHHHH
Confidence 3567777775 5666777666542 234888888776655544433322 24577888887651 111111
Q ss_pred hccCCceeEEecCcc
Q psy5757 104 MMKFDRYDFLPHAPA 118 (139)
Q Consensus 104 ~~~~~~~D~vi~~~~ 118 (139)
......+|+++.+..
T Consensus 76 ~~~~~~id~vi~~ag 90 (252)
T PRK06138 76 AARWGRLDVLVNNAG 90 (252)
T ss_pred HHHcCCCCEEEECCC
Confidence 112346899988775
No 434
>PRK08177 short chain dehydrogenase; Provisional
Probab=77.26 E-value=17 Score=25.37 Aligned_cols=75 Identities=19% Similarity=0.111 Sum_probs=41.5
Q ss_pred eEEEEcccCChhHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhhhccCC
Q psy5757 32 KVLEIGSGSGYLTNMISELMNS-TGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVELMMKFD 108 (139)
Q Consensus 32 ~iLdiG~G~G~~~~~l~~~~~~-~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~~~~~ 108 (139)
.++-.| |+|..+..+++.+.. ..+|+.++.++...+.+.+ ..++.+...|+.+. +.++.......
T Consensus 3 ~vlItG-~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~-----------~~~~~~~~~D~~d~~~~~~~~~~~~~~ 70 (225)
T PRK08177 3 TALIIG-ASRGLGLGLVDRLLERGWQVTATVRGPQQDTALQA-----------LPGVHIEKLDMNDPASLDQLLQRLQGQ 70 (225)
T ss_pred EEEEeC-CCchHHHHHHHHHHhCCCEEEEEeCCCcchHHHHh-----------ccccceEEcCCCCHHHHHHHHHHhhcC
Confidence 455555 467777776666532 3488888887654433221 13455566676541 22332222234
Q ss_pred ceeEEecCcc
Q psy5757 109 RYDFLPHAPA 118 (139)
Q Consensus 109 ~~D~vi~~~~ 118 (139)
.+|+++.+..
T Consensus 71 ~id~vi~~ag 80 (225)
T PRK08177 71 RFDLLFVNAG 80 (225)
T ss_pred CCCEEEEcCc
Confidence 6899988864
No 435
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=77.14 E-value=27 Score=25.89 Aligned_cols=88 Identities=10% Similarity=0.147 Sum_probs=55.2
Q ss_pred CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhhhc
Q psy5757 29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVELMM 105 (139)
Q Consensus 29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~~ 105 (139)
.++.+|--|+.+| .+..+++.+. ...+++-+--+.+.+...++.+.... .-.++++..|..+. .+.+....
T Consensus 5 ~~~~~lITGASsG-IG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~-----~v~v~vi~~DLs~~~~~~~l~~~l 78 (265)
T COG0300 5 KGKTALITGASSG-IGAELAKQLARRGYNLILVARREDKLEALAKELEDKT-----GVEVEVIPADLSDPEALERLEDEL 78 (265)
T ss_pred CCcEEEEECCCch-HHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhh-----CceEEEEECcCCChhHHHHHHHHH
Confidence 4567777666555 4555555442 12389999999999999888887611 14678888887762 22222222
Q ss_pred --cCCceeEEecCcccccc
Q psy5757 106 --KFDRYDFLPHAPAESWM 122 (139)
Q Consensus 106 --~~~~~D~vi~~~~~~~~ 122 (139)
....+|++|-|.-+...
T Consensus 79 ~~~~~~IdvLVNNAG~g~~ 97 (265)
T COG0300 79 KERGGPIDVLVNNAGFGTF 97 (265)
T ss_pred HhcCCcccEEEECCCcCCc
Confidence 22479999998875543
No 436
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=76.90 E-value=22 Score=25.09 Aligned_cols=44 Identities=20% Similarity=0.379 Sum_probs=32.5
Q ss_pred CCCCCeEEEEcccC-ChhHHHHHHHcCCCceEEEEeCCHHHHHHHHH
Q psy5757 27 LNENSKVLEIGSGS-GYLTNMISELMNSTGQVIGIEHVPQLVNSSIQ 72 (139)
Q Consensus 27 ~~~~~~iLdiG~G~-G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~ 72 (139)
+.++.+||..|+|+ |.....+++..+ .++++++.++...+.+++
T Consensus 132 ~~~~~~vli~g~~~~G~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~ 176 (271)
T cd05188 132 LKPGDTVLVLGAGGVGLLAAQLAKAAG--ARVIVTDRSDEKLELAKE 176 (271)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHHH
Confidence 46788999999885 555666666655 489999999877666643
No 437
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=76.89 E-value=24 Score=25.25 Aligned_cols=80 Identities=13% Similarity=0.066 Sum_probs=45.6
Q ss_pred CCCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--
Q psy5757 29 ENSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL-- 103 (139)
Q Consensus 29 ~~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~-- 103 (139)
+++.++-.|+ +|..+..+++.+ ....+|+.++.+++.++...... ..++.++..|+.+. ......
T Consensus 4 ~~k~vlItGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~l~~~~---------~~~~~~~~~D~~~~~~~~~~~~~~ 73 (262)
T TIGR03325 4 KGEVVLVTGG-ASGLGRAIVDRFVAEGARVAVLDKSAAGLQELEAAH---------GDAVVGVEGDVRSLDDHKEAVARC 73 (262)
T ss_pred CCcEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhc---------CCceEEEEeccCCHHHHHHHHHHH
Confidence 4567777775 555666666655 22448888888866554433211 13566777777651 111111
Q ss_pred hccCCceeEEecCcc
Q psy5757 104 MMKFDRYDFLPHAPA 118 (139)
Q Consensus 104 ~~~~~~~D~vi~~~~ 118 (139)
....+.+|+++.+..
T Consensus 74 ~~~~g~id~li~~Ag 88 (262)
T TIGR03325 74 VAAFGKIDCLIPNAG 88 (262)
T ss_pred HHHhCCCCEEEECCC
Confidence 112356899999875
No 438
>PRK09242 tropinone reductase; Provisional
Probab=76.86 E-value=24 Score=25.09 Aligned_cols=86 Identities=9% Similarity=0.086 Sum_probs=50.3
Q ss_pred CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--
Q psy5757 29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL-- 103 (139)
Q Consensus 29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~-- 103 (139)
.++.+|-.|+ +|..+..+++.+. ...+|+.++.+++..+...+.+... ....++.++..|+.+. +..+..
T Consensus 8 ~~k~~lItGa-~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~----~~~~~~~~~~~Dl~~~~~~~~~~~~~ 82 (257)
T PRK09242 8 DGQTALITGA-SKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEE----FPEREVHGLAADVSDDEDRRAILDWV 82 (257)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhh----CCCCeEEEEECCCCCHHHHHHHHHHH
Confidence 4677887776 4555566655542 2348888888877666655555431 0124677778887652 111111
Q ss_pred hccCCceeEEecCccc
Q psy5757 104 MMKFDRYDFLPHAPAE 119 (139)
Q Consensus 104 ~~~~~~~D~vi~~~~~ 119 (139)
....+.+|+++.+...
T Consensus 83 ~~~~g~id~li~~ag~ 98 (257)
T PRK09242 83 EDHWDGLHILVNNAGG 98 (257)
T ss_pred HHHcCCCCEEEECCCC
Confidence 1124578999888753
No 439
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=76.68 E-value=26 Score=25.31 Aligned_cols=84 Identities=14% Similarity=0.273 Sum_probs=48.7
Q ss_pred CCCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--
Q psy5757 29 ENSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL-- 103 (139)
Q Consensus 29 ~~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~-- 103 (139)
+++.+|-.|++ |..+..+++.+ ....+|+.++.+++..+...+.+... ..++.++..|+.+. +..+..
T Consensus 9 ~~k~vlVtGas-~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~Dl~~~~~v~~~~~~~ 81 (278)
T PRK08277 9 KGKVAVITGGG-GVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAA------GGEALAVKADVLDKESLEQARQQI 81 (278)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCeEEEEECCCCCHHHHHHHHHHH
Confidence 45667766654 55666666655 22348888898876665555544330 13577788887651 111111
Q ss_pred hccCCceeEEecCccc
Q psy5757 104 MMKFDRYDFLPHAPAE 119 (139)
Q Consensus 104 ~~~~~~~D~vi~~~~~ 119 (139)
....+++|++|.+...
T Consensus 82 ~~~~g~id~li~~ag~ 97 (278)
T PRK08277 82 LEDFGPCDILINGAGG 97 (278)
T ss_pred HHHcCCCCEEEECCCC
Confidence 1123578999988753
No 440
>PRK08589 short chain dehydrogenase; Validated
Probab=76.57 E-value=26 Score=25.33 Aligned_cols=83 Identities=14% Similarity=0.219 Sum_probs=46.5
Q ss_pred CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--
Q psy5757 29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL-- 103 (139)
Q Consensus 29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~-- 103 (139)
+++.+|-.|++ +..+..+++.+- ...+|+.++.+ +.++...+.+... ..++.++..|+.+. +..+..
T Consensus 5 ~~k~vlItGas-~gIG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~~------~~~~~~~~~Dl~~~~~~~~~~~~~ 76 (272)
T PRK08589 5 ENKVAVITGAS-TGIGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKSN------GGKAKAYHVDISDEQQVKDFASEI 76 (272)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHHhc------CCeEEEEEeecCCHHHHHHHHHHH
Confidence 45677766654 455666655542 23489999888 4444444434331 13567777787652 121111
Q ss_pred hccCCceeEEecCccc
Q psy5757 104 MMKFDRYDFLPHAPAE 119 (139)
Q Consensus 104 ~~~~~~~D~vi~~~~~ 119 (139)
....+.+|+++.|...
T Consensus 77 ~~~~g~id~li~~Ag~ 92 (272)
T PRK08589 77 KEQFGRVDVLFNNAGV 92 (272)
T ss_pred HHHcCCcCEEEECCCC
Confidence 1124568999998754
No 441
>PRK08643 acetoin reductase; Validated
Probab=76.36 E-value=25 Score=24.97 Aligned_cols=81 Identities=10% Similarity=0.085 Sum_probs=47.7
Q ss_pred CeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--hc
Q psy5757 31 SKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL--MM 105 (139)
Q Consensus 31 ~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~--~~ 105 (139)
+.+|-.| |+|..+..+++.+- ...+|+.++.++...+.....+... ..++.++..|+.+. +.++.. ..
T Consensus 3 k~~lItG-as~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~Dl~~~~~~~~~~~~~~~ 75 (256)
T PRK08643 3 KVALVTG-AGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKD------GGKAIAVKADVSDRDQVFAAVRQVVD 75 (256)
T ss_pred CEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 4566666 55656666666552 2348899998877666655554431 14567778887752 111111 11
Q ss_pred cCCceeEEecCcc
Q psy5757 106 KFDRYDFLPHAPA 118 (139)
Q Consensus 106 ~~~~~D~vi~~~~ 118 (139)
..+.+|+++.+..
T Consensus 76 ~~~~id~vi~~ag 88 (256)
T PRK08643 76 TFGDLNVVVNNAG 88 (256)
T ss_pred HcCCCCEEEECCC
Confidence 2356899988874
No 442
>PRK06181 short chain dehydrogenase; Provisional
Probab=76.26 E-value=25 Score=25.03 Aligned_cols=81 Identities=15% Similarity=0.160 Sum_probs=47.1
Q ss_pred CeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--hc
Q psy5757 31 SKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL--MM 105 (139)
Q Consensus 31 ~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~--~~ 105 (139)
+.+|-.| |+|.++..+++.+ ....+|+.++.++...+...+.+... ..++.++..|+.+. +..+.. ..
T Consensus 2 ~~vlVtG-asg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~------~~~~~~~~~Dl~~~~~~~~~~~~~~~ 74 (263)
T PRK06181 2 KVVIITG-ASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADH------GGEALVVPTDVSDAEACERLIEAAVA 74 (263)
T ss_pred CEEEEec-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 3566555 5666777776654 22348999998876666554444331 14677778887651 111111 11
Q ss_pred cCCceeEEecCcc
Q psy5757 106 KFDRYDFLPHAPA 118 (139)
Q Consensus 106 ~~~~~D~vi~~~~ 118 (139)
....+|+++.+..
T Consensus 75 ~~~~id~vi~~ag 87 (263)
T PRK06181 75 RFGGIDILVNNAG 87 (263)
T ss_pred HcCCCCEEEECCC
Confidence 2346899988865
No 443
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=76.17 E-value=19 Score=27.18 Aligned_cols=84 Identities=15% Similarity=0.156 Sum_probs=46.9
Q ss_pred CCCeEEEEcccCChhHHHHHHHcCC-CceEEEEeCCHHHHHHH-HHHHHh-hccccccCCcEEEEEccchhhhHHHhhhc
Q psy5757 29 ENSKVLEIGSGSGYLTNMISELMNS-TGQVIGIEHVPQLVNSS-IQNILH-SNARLLTDGHIKFVALGMIKRIETVELMM 105 (139)
Q Consensus 29 ~~~~iLdiG~G~G~~~~~l~~~~~~-~~~v~~~d~~~~~~~~a-~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 105 (139)
+.++||-.| |+|..+..+++.+-. .-+|+++|......... ...... +. ....+++++.+|+.+ ...+..-
T Consensus 14 ~~~~vlVtG-atGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~Di~d-~~~l~~~- 87 (348)
T PRK15181 14 APKRWLITG-VAGFIGSGLLEELLFLNQTVIGLDNFSTGYQHNLDDVRTSVSE---EQWSRFIFIQGDIRK-FTDCQKA- 87 (348)
T ss_pred cCCEEEEEC-CccHHHHHHHHHHHHCCCEEEEEeCCCCcchhhhhhhhhcccc---ccCCceEEEEccCCC-HHHHHHH-
Confidence 446777665 789888888887732 23899998753321111 111111 00 001467889999876 2222211
Q ss_pred cCCceeEEecCccc
Q psy5757 106 KFDRYDFLPHAPAE 119 (139)
Q Consensus 106 ~~~~~D~vi~~~~~ 119 (139)
.+.+|+||+....
T Consensus 88 -~~~~d~ViHlAa~ 100 (348)
T PRK15181 88 -CKNVDYVLHQAAL 100 (348)
T ss_pred -hhCCCEEEECccc
Confidence 2347888887764
No 444
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=76.14 E-value=8.4 Score=23.00 Aligned_cols=48 Identities=25% Similarity=0.499 Sum_probs=26.9
Q ss_pred HHHHHHHhcc--cCCCCCeEEEEcccCCh-hHHHHHHHcCCCceEEEEeCC
Q psy5757 16 ILTYLSIIQP--HLNENSKVLEIGSGSGY-LTNMISELMNSTGQVIGIEHV 63 (139)
Q Consensus 16 ~~~~~~~l~~--~~~~~~~iLdiG~G~G~-~~~~l~~~~~~~~~v~~~d~~ 63 (139)
+..+++.... .+...+++|-+||.+|+ ++..++..+...+..+++-..
T Consensus 23 V~~qI~yvk~~~~~~GpK~VLViGaStGyGLAsRIa~aFg~gA~TiGV~fE 73 (78)
T PF12242_consen 23 VENQIEYVKSQGKINGPKKVLVIGASTGYGLASRIAAAFGAGADTIGVSFE 73 (78)
T ss_dssp HHHHHHHHHHC---TS-SEEEEES-SSHHHHHHHHHHHHCC--EEEEEE--
T ss_pred HHHHHHHHHhcCCCCCCceEEEEecCCcccHHHHHHHHhcCCCCEEEEeec
Confidence 4444444432 13445799999999996 666677776666677776544
No 445
>PRK08324 short chain dehydrogenase; Validated
Probab=76.03 E-value=29 Score=29.11 Aligned_cols=82 Identities=10% Similarity=0.091 Sum_probs=48.8
Q ss_pred CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--
Q psy5757 29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL-- 103 (139)
Q Consensus 29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~-- 103 (139)
.++.+|-.|+ +|..+..+++.+. ...+|+.++.++...+.+.+.+.. ..++.++..|+.+. +..+..
T Consensus 421 ~gk~vLVTGa-sggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~-------~~~v~~v~~Dvtd~~~v~~~~~~~ 492 (681)
T PRK08324 421 AGKVALVTGA-AGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGG-------PDRALGVACDVTDEAAVQAAFEEA 492 (681)
T ss_pred CCCEEEEecC-CCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhc-------cCcEEEEEecCCCHHHHHHHHHHH
Confidence 4567777664 5566666666552 234899999998766655544332 13677777787651 111111
Q ss_pred hccCCceeEEecCcc
Q psy5757 104 MMKFDRYDFLPHAPA 118 (139)
Q Consensus 104 ~~~~~~~D~vi~~~~ 118 (139)
....+.+|++|.+..
T Consensus 493 ~~~~g~iDvvI~~AG 507 (681)
T PRK08324 493 ALAFGGVDIVVSNAG 507 (681)
T ss_pred HHHcCCCCEEEECCC
Confidence 112346899988875
No 446
>PRK08703 short chain dehydrogenase; Provisional
Probab=75.49 E-value=25 Score=24.66 Aligned_cols=83 Identities=12% Similarity=0.169 Sum_probs=46.0
Q ss_pred CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchh----hhHHHh
Q psy5757 29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIK----RIETVE 102 (139)
Q Consensus 29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~----~~~~~~ 102 (139)
++++++-.|+ +|.++..+++.+. ...+|+.++-++...+...+.+.. + ...+.++..|..+ .+.++.
T Consensus 5 ~~k~vlItG~-sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~------~~~~~~~~~D~~~~~~~~~~~~~ 77 (239)
T PRK08703 5 SDKTILVTGA-SQGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEAG------HPEPFAIRFDLMSAEEKEFEQFA 77 (239)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHHcC------CCCcceEEeeecccchHHHHHHH
Confidence 3567888884 6666666666552 234899999888766655554433 1 1234455555432 122111
Q ss_pred h--hccC-CceeEEecCcc
Q psy5757 103 L--MMKF-DRYDFLPHAPA 118 (139)
Q Consensus 103 ~--~~~~-~~~D~vi~~~~ 118 (139)
. .... ..+|+++.+..
T Consensus 78 ~~i~~~~~~~id~vi~~ag 96 (239)
T PRK08703 78 ATIAEATQGKLDGIVHCAG 96 (239)
T ss_pred HHHHHHhCCCCCEEEEecc
Confidence 0 1112 46799988775
No 447
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=75.40 E-value=9.5 Score=28.78 Aligned_cols=46 Identities=11% Similarity=0.205 Sum_probs=30.6
Q ss_pred CCCCCeEEEEccc-CChhHHHHHHHcCCCceEEEEeCCHHHHHHHHH
Q psy5757 27 LNENSKVLEIGSG-SGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQ 72 (139)
Q Consensus 27 ~~~~~~iLdiG~G-~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~ 72 (139)
.+++.+||-+||| .|..+..++++....++++++|.+++.++.+++
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~ 207 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF 207 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh
Confidence 4678899999875 233444555542112379999999888877754
No 448
>PRK07791 short chain dehydrogenase; Provisional
Probab=75.27 E-value=30 Score=25.37 Aligned_cols=84 Identities=11% Similarity=0.104 Sum_probs=45.5
Q ss_pred CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCH---------HHHHHHHHHHHhhccccccCCcEEEEEccchhh-
Q psy5757 29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVP---------QLVNSSIQNILHSNARLLTDGHIKFVALGMIKR- 97 (139)
Q Consensus 29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~---------~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~- 97 (139)
+++.+|-.|+++ ..+..+++.+- ...+++.++.+. +.++.+.+.+... ..++.++..|+.+.
T Consensus 5 ~~k~~lITGas~-GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~------~~~~~~~~~Dv~~~~ 77 (286)
T PRK07791 5 DGRVVIVTGAGG-GIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAA------GGEAVANGDDIADWD 77 (286)
T ss_pred CCCEEEEECCCc-hHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhc------CCceEEEeCCCCCHH
Confidence 456788777654 45555555442 234777777654 3344444433330 13566777787651
Q ss_pred -hHHHhh--hccCCceeEEecCccc
Q psy5757 98 -IETVEL--MMKFDRYDFLPHAPAE 119 (139)
Q Consensus 98 -~~~~~~--~~~~~~~D~vi~~~~~ 119 (139)
+.++.. ....+++|+++.|...
T Consensus 78 ~v~~~~~~~~~~~g~id~lv~nAG~ 102 (286)
T PRK07791 78 GAANLVDAAVETFGGLDVLVNNAGI 102 (286)
T ss_pred HHHHHHHHHHHhcCCCCEEEECCCC
Confidence 111111 1134678999988764
No 449
>PRK08265 short chain dehydrogenase; Provisional
Probab=75.21 E-value=28 Score=24.98 Aligned_cols=80 Identities=14% Similarity=0.243 Sum_probs=46.4
Q ss_pred CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--
Q psy5757 29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL-- 103 (139)
Q Consensus 29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~-- 103 (139)
+++.+|-.| |+|..+..+++.+. ...+|+..+.+++..+...+.+ ..++.++..|+.+. +.++..
T Consensus 5 ~~k~vlItG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~---------~~~~~~~~~Dl~~~~~~~~~~~~~ 74 (261)
T PRK08265 5 AGKVAIVTG-GATLIGAAVARALVAAGARVAIVDIDADNGAAVAASL---------GERARFIATDITDDAAIERAVATV 74 (261)
T ss_pred CCCEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---------CCeeEEEEecCCCHHHHHHHHHHH
Confidence 346777766 45566666666552 2348888888865444433322 13577788887752 111111
Q ss_pred hccCCceeEEecCcc
Q psy5757 104 MMKFDRYDFLPHAPA 118 (139)
Q Consensus 104 ~~~~~~~D~vi~~~~ 118 (139)
....+.+|+++.|..
T Consensus 75 ~~~~g~id~lv~~ag 89 (261)
T PRK08265 75 VARFGRVDILVNLAC 89 (261)
T ss_pred HHHhCCCCEEEECCC
Confidence 112456899988865
No 450
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=75.15 E-value=18 Score=27.91 Aligned_cols=73 Identities=16% Similarity=0.338 Sum_probs=41.0
Q ss_pred EEEEcccCChhHHHHHHHcCCCc---eEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccCCc
Q psy5757 33 VLEIGSGSGYLTNMISELMNSTG---QVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKFDR 109 (139)
Q Consensus 33 iLdiG~G~G~~~~~l~~~~~~~~---~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~ 109 (139)
|+-+|+ |..+..+++.+.... +++..|.+.+.++...+.+. ..++++...|+.+ .+.+..- ...
T Consensus 1 IlvlG~--G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~--------~~~~~~~~~d~~~-~~~l~~~--~~~ 67 (386)
T PF03435_consen 1 ILVLGA--GRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLL--------GDRVEAVQVDVND-PESLAEL--LRG 67 (386)
T ss_dssp EEEE----SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--T--------TTTEEEEE--TTT-HHHHHHH--HTT
T ss_pred CEEEcC--cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhcc--------ccceeEEEEecCC-HHHHHHH--Hhc
Confidence 566777 777777766553222 78999999877666554432 2678888888776 3322211 233
Q ss_pred eeEEecCcc
Q psy5757 110 YDFLPHAPA 118 (139)
Q Consensus 110 ~D~vi~~~~ 118 (139)
.|+|+....
T Consensus 68 ~dvVin~~g 76 (386)
T PF03435_consen 68 CDVVINCAG 76 (386)
T ss_dssp SSEEEE-SS
T ss_pred CCEEEECCc
Confidence 599986653
No 451
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=74.70 E-value=30 Score=25.22 Aligned_cols=84 Identities=14% Similarity=0.084 Sum_probs=46.6
Q ss_pred CCCeEEEEcccC-ChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh-
Q psy5757 29 ENSKVLEIGSGS-GYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL- 103 (139)
Q Consensus 29 ~~~~iLdiG~G~-G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~- 103 (139)
.++.+|-.|+++ ++.+..+++.+. ...+|+..+.++...+.+++.... +. .+ .++..|+.+. +..+..
T Consensus 4 ~~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~-----~~-~~-~~~~~Dv~d~~~v~~~~~~ 76 (274)
T PRK08415 4 KGKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQE-----LG-SD-YVYELDVSKPEHFKSLAES 76 (274)
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHh-----cC-Cc-eEEEecCCCHHHHHHHHHH
Confidence 457888888763 567777777652 234788878775322223322222 11 12 4566777651 222211
Q ss_pred -hccCCceeEEecCccc
Q psy5757 104 -MMKFDRYDFLPHAPAE 119 (139)
Q Consensus 104 -~~~~~~~D~vi~~~~~ 119 (139)
....+++|+++.|...
T Consensus 77 i~~~~g~iDilVnnAG~ 93 (274)
T PRK08415 77 LKKDLGKIDFIVHSVAF 93 (274)
T ss_pred HHHHcCCCCEEEECCcc
Confidence 1234679999998864
No 452
>PRK07041 short chain dehydrogenase; Provisional
Probab=74.60 E-value=26 Score=24.36 Aligned_cols=72 Identities=10% Similarity=0.132 Sum_probs=42.3
Q ss_pred ccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhhhccCCceeEEe
Q psy5757 38 SGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVELMMKFDRYDFLP 114 (139)
Q Consensus 38 ~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~~~~~~~D~vi 114 (139)
.++|..+..+++.+- ...+|+.++.+++..+...+.+.. ..+++++..|+.+. +..+.. ..+.+|.++
T Consensus 4 Gas~~iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~-------~~~~~~~~~Dl~~~~~~~~~~~--~~~~id~li 74 (230)
T PRK07041 4 GGSSGIGLALARAFAAEGARVTIASRSRDRLAAAARALGG-------GAPVRTAALDITDEAAVDAFFA--EAGPFDHVV 74 (230)
T ss_pred cCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc-------CCceEEEEccCCCHHHHHHHHH--hcCCCCEEE
Confidence 356777777776652 234888998887655544333321 14577778887652 222211 235689998
Q ss_pred cCcc
Q psy5757 115 HAPA 118 (139)
Q Consensus 115 ~~~~ 118 (139)
.+..
T Consensus 75 ~~ag 78 (230)
T PRK07041 75 ITAA 78 (230)
T ss_pred ECCC
Confidence 8764
No 453
>PRK08226 short chain dehydrogenase; Provisional
Probab=74.38 E-value=28 Score=24.75 Aligned_cols=83 Identities=12% Similarity=0.071 Sum_probs=46.9
Q ss_pred CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--
Q psy5757 29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL-- 103 (139)
Q Consensus 29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~-- 103 (139)
.++++|-.|+ +|..+..+++.+- ...+|+.++.++...+.+.+.... ..++.++..|+.+. +..+..
T Consensus 5 ~~~~~lItG~-s~giG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~~~~-------~~~~~~~~~Dl~~~~~v~~~~~~~ 76 (263)
T PRK08226 5 TGKTALITGA-LQGIGEGIARVFARHGANLILLDISPEIEKLADELCGR-------GHRCTAVVADVRDPASVAAAIKRA 76 (263)
T ss_pred CCCEEEEeCC-CChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHh-------CCceEEEECCCCCHHHHHHHHHHH
Confidence 3567777665 5666666666552 234888888876533333322211 13567778887651 222111
Q ss_pred hccCCceeEEecCccc
Q psy5757 104 MMKFDRYDFLPHAPAE 119 (139)
Q Consensus 104 ~~~~~~~D~vi~~~~~ 119 (139)
......+|+++.+...
T Consensus 77 ~~~~~~id~vi~~ag~ 92 (263)
T PRK08226 77 KEKEGRIDILVNNAGV 92 (263)
T ss_pred HHHcCCCCEEEECCCc
Confidence 1124568999988764
No 454
>KOG1209|consensus
Probab=74.23 E-value=18 Score=26.42 Aligned_cols=35 Identities=20% Similarity=0.180 Sum_probs=27.3
Q ss_pred CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCC
Q psy5757 29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHV 63 (139)
Q Consensus 29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~ 63 (139)
..+.||-.||.+|+.+-++++.+. ...+|++.--+
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~ 41 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFARNGYLVYATARR 41 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccc
Confidence 456899999999999999998873 24577777644
No 455
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=74.17 E-value=28 Score=24.49 Aligned_cols=82 Identities=12% Similarity=0.166 Sum_probs=48.2
Q ss_pred CCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--h
Q psy5757 30 NSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL--M 104 (139)
Q Consensus 30 ~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~--~ 104 (139)
++.+|-.|+ +|..+..+++.+- ...+|+.++.++.....+.+.+... ..++.++..|..+. +..+.. .
T Consensus 3 ~~~ilItGa-s~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~d~~~~~~~~~~~~~~~ 75 (250)
T TIGR03206 3 DKTAIVTGG-GGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAK------GGNAQAFACDITDRDSVDTAVAAAE 75 (250)
T ss_pred CCEEEEeCC-CChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhc------CCcEEEEEcCCCCHHHHHHHHHHHH
Confidence 466777764 5666666666552 2348889988876665555544331 14677888887651 222111 1
Q ss_pred ccCCceeEEecCcc
Q psy5757 105 MKFDRYDFLPHAPA 118 (139)
Q Consensus 105 ~~~~~~D~vi~~~~ 118 (139)
.....+|++|.+..
T Consensus 76 ~~~~~~d~vi~~ag 89 (250)
T TIGR03206 76 QALGPVDVLVNNAG 89 (250)
T ss_pred HHcCCCCEEEECCC
Confidence 12345898888875
No 456
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=73.87 E-value=29 Score=24.61 Aligned_cols=83 Identities=7% Similarity=0.097 Sum_probs=49.5
Q ss_pred CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--
Q psy5757 29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL-- 103 (139)
Q Consensus 29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~-- 103 (139)
.++.+|-.| |+|..+..+++++- ...+++..+.++..++...+.+... ..++.++..|+.+. +..+..
T Consensus 8 ~~k~~lItG-as~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~------~~~~~~~~~Dl~~~~~~~~~~~~~ 80 (254)
T PRK08085 8 AGKNILITG-SAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQE------GIKAHAAPFNVTHKQEVEAAIEHI 80 (254)
T ss_pred CCCEEEEEC-CCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhc------CCeEEEEecCCCCHHHHHHHHHHH
Confidence 456777776 55666666666552 2348888888877666655544431 13566777787652 121111
Q ss_pred hccCCceeEEecCcc
Q psy5757 104 MMKFDRYDFLPHAPA 118 (139)
Q Consensus 104 ~~~~~~~D~vi~~~~ 118 (139)
....+.+|+++.+..
T Consensus 81 ~~~~~~id~vi~~ag 95 (254)
T PRK08085 81 EKDIGPIDVLINNAG 95 (254)
T ss_pred HHhcCCCCEEEECCC
Confidence 112356899998875
No 457
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=73.54 E-value=26 Score=26.06 Aligned_cols=65 Identities=12% Similarity=0.192 Sum_probs=45.3
Q ss_pred CCCCeEEEEcccCChhHHHHHHHcCC---CceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchh
Q psy5757 28 NENSKVLEIGSGSGYLTNMISELMNS---TGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIK 96 (139)
Q Consensus 28 ~~~~~iLdiG~G~G~~~~~l~~~~~~---~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~ 96 (139)
..+-..+|+|+|+..-++.+...+.+ ..+.+.+|+|...++...+.+...- ..-.+.-+++|...
T Consensus 77 ~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y----~~l~v~~l~~~~~~ 144 (321)
T COG4301 77 TGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREY----PGLEVNALCGDYEL 144 (321)
T ss_pred hCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhC----CCCeEeehhhhHHH
Confidence 44668999999999999999888854 2578999999988887655554310 01234456666443
No 458
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=73.52 E-value=25 Score=25.90 Aligned_cols=44 Identities=23% Similarity=0.329 Sum_probs=32.7
Q ss_pred CCCCCeEEEEccc-CChhHHHHHHHcCCCceEEEEeCCHHHHHHHHH
Q psy5757 27 LNENSKVLEIGSG-SGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQ 72 (139)
Q Consensus 27 ~~~~~~iLdiG~G-~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~ 72 (139)
+.++.+||..|+| .|..+..+++..+. ++++++.++...+.+++
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~G~--~V~~~~~s~~~~~~~~~ 207 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAMGA--AVIAVDIKEEKLELAKE 207 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCC--EEEEEcCCHHHHHHHHH
Confidence 5678888887765 36677777777653 79999999887777644
No 459
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=73.17 E-value=33 Score=27.06 Aligned_cols=77 Identities=13% Similarity=0.135 Sum_probs=44.7
Q ss_pred CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccC
Q psy5757 29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKF 107 (139)
Q Consensus 29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 107 (139)
++++++-. .|+|..+..+++.+. ...+|++++.+++.++.. .... ..++..+..|+.+ .+.+.. ..
T Consensus 177 ~gK~VLIT-GASgGIG~aLA~~La~~G~~Vi~l~r~~~~l~~~---~~~~------~~~v~~v~~Dvsd-~~~v~~--~l 243 (406)
T PRK07424 177 KGKTVAVT-GASGTLGQALLKELHQQGAKVVALTSNSDKITLE---INGE------DLPVKTLHWQVGQ-EAALAE--LL 243 (406)
T ss_pred CCCEEEEe-CCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH---Hhhc------CCCeEEEEeeCCC-HHHHHH--Hh
Confidence 45677754 577888888887652 345888888776544321 1110 1235556666655 232222 23
Q ss_pred CceeEEecCcc
Q psy5757 108 DRYDFLPHAPA 118 (139)
Q Consensus 108 ~~~D~vi~~~~ 118 (139)
+.+|++|.|..
T Consensus 244 ~~IDiLInnAG 254 (406)
T PRK07424 244 EKVDILIINHG 254 (406)
T ss_pred CCCCEEEECCC
Confidence 56899988764
No 460
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=73.07 E-value=13 Score=28.07 Aligned_cols=44 Identities=23% Similarity=0.345 Sum_probs=33.2
Q ss_pred CCCCCeEEEEcccC-ChhHHHHHHHcCCCceEEEEeCCHHHHHHHHH
Q psy5757 27 LNENSKVLEIGSGS-GYLTNMISELMNSTGQVIGIEHVPQLVNSSIQ 72 (139)
Q Consensus 27 ~~~~~~iLdiG~G~-G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~ 72 (139)
++++.+|+-.|+|. |..+..+++..+. ++++++.+++.++.+++
T Consensus 164 ~~~g~~VlV~G~G~vG~~a~~~a~~~G~--~vi~~~~~~~~~~~~~~ 208 (349)
T TIGR03201 164 LKKGDLVIVIGAGGVGGYMVQTAKAMGA--AVVAIDIDPEKLEMMKG 208 (349)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC--eEEEEcCCHHHHHHHHH
Confidence 57788999999853 5566667777653 79999999888777744
No 461
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=72.88 E-value=42 Score=26.10 Aligned_cols=48 Identities=13% Similarity=0.259 Sum_probs=34.2
Q ss_pred CCCeEEEEcccCCh----hHHHHHHHc--CCCceEEEEeC----CHHHHHHHHHHHHh
Q psy5757 29 ENSKVLEIGSGSGY----LTNMISELM--NSTGQVIGIEH----VPQLVNSSIQNILH 76 (139)
Q Consensus 29 ~~~~iLdiG~G~G~----~~~~l~~~~--~~~~~v~~~d~----~~~~~~~a~~~~~~ 76 (139)
+.-.|+|+|.|.|. +-..|+.+. +|.-++++++. +...++.+.+++..
T Consensus 110 ~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~ 167 (374)
T PF03514_consen 110 RRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAE 167 (374)
T ss_pred cceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHH
Confidence 34579999999996 344444432 34568999999 77788888777654
No 462
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=72.72 E-value=30 Score=24.25 Aligned_cols=84 Identities=14% Similarity=0.187 Sum_probs=49.1
Q ss_pred CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--
Q psy5757 29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL-- 103 (139)
Q Consensus 29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~-- 103 (139)
.++++|-.| |+|..+..+++.+- ...+|++++-++.......+.+... ..++.++..|+.+. +.+...
T Consensus 5 ~~~~ilItG-asg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~------~~~~~~~~~Dl~~~~~~~~~~~~~ 77 (251)
T PRK12826 5 EGRVALVTG-AARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAA------GGKARARQVDVRDRAALKAAVAAG 77 (251)
T ss_pred CCCEEEEcC-CCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCeEEEEECCCCCHHHHHHHHHHH
Confidence 356788666 46777777766552 1238899988866555554444331 13577888887651 111111
Q ss_pred hccCCceeEEecCccc
Q psy5757 104 MMKFDRYDFLPHAPAE 119 (139)
Q Consensus 104 ~~~~~~~D~vi~~~~~ 119 (139)
....+.+|+++++...
T Consensus 78 ~~~~~~~d~vi~~ag~ 93 (251)
T PRK12826 78 VEDFGRLDILVANAGI 93 (251)
T ss_pred HHHhCCCCEEEECCCC
Confidence 1123468999888753
No 463
>PRK09291 short chain dehydrogenase; Provisional
Probab=72.63 E-value=31 Score=24.39 Aligned_cols=79 Identities=10% Similarity=0.028 Sum_probs=46.3
Q ss_pred CeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccCCc
Q psy5757 31 SKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKFDR 109 (139)
Q Consensus 31 ~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~ 109 (139)
+++|-.|+ +|..+..+++.+. ...++++..-++............. ..++.++..|+.+ ...+... -...
T Consensus 3 ~~vlVtGa-sg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~~-~~~~~~~-~~~~ 73 (257)
T PRK09291 3 KTILITGA-GSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARR------GLALRVEKLDLTD-AIDRAQA-AEWD 73 (257)
T ss_pred CEEEEeCC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCcceEEEeeCCC-HHHHHHH-hcCC
Confidence 45666665 6667777766552 2348888887766554444433331 1357788888766 2222111 1236
Q ss_pred eeEEecCcc
Q psy5757 110 YDFLPHAPA 118 (139)
Q Consensus 110 ~D~vi~~~~ 118 (139)
+|+++.+..
T Consensus 74 id~vi~~ag 82 (257)
T PRK09291 74 VDVLLNNAG 82 (257)
T ss_pred CCEEEECCC
Confidence 899998764
No 464
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=72.52 E-value=32 Score=27.03 Aligned_cols=73 Identities=15% Similarity=0.243 Sum_probs=41.1
Q ss_pred CCCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCH-HHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757 29 ENSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVP-QLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMK 106 (139)
Q Consensus 29 ~~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~-~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 106 (139)
.+++++-+|+|. .+..+++.+ ....+|+++|.++ ..++...+.+.. .+++++.++..+..
T Consensus 4 ~~k~v~iiG~g~--~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~--------~~~~~~~~~~~~~~-------- 65 (450)
T PRK14106 4 KGKKVLVVGAGV--SGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGE--------LGIELVLGEYPEEF-------- 65 (450)
T ss_pred CCCEEEEECCCH--HHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHh--------cCCEEEeCCcchhH--------
Confidence 457888888776 334444443 2234899999875 333222222322 24556666643311
Q ss_pred CCceeEEecCccc
Q psy5757 107 FDRYDFLPHAPAE 119 (139)
Q Consensus 107 ~~~~D~vi~~~~~ 119 (139)
.+.+|+|+.+...
T Consensus 66 ~~~~d~vv~~~g~ 78 (450)
T PRK14106 66 LEGVDLVVVSPGV 78 (450)
T ss_pred hhcCCEEEECCCC
Confidence 2358988887754
No 465
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=72.51 E-value=34 Score=24.84 Aligned_cols=84 Identities=14% Similarity=0.079 Sum_probs=45.2
Q ss_pred CCCeEEEEcccC-ChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh-
Q psy5757 29 ENSKVLEIGSGS-GYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL- 103 (139)
Q Consensus 29 ~~~~iLdiG~G~-G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~- 103 (139)
+++.+|-.|+++ +..+..+++.+- ...+|+..+.++...+..++.... + .....+..|+.+. +..+..
T Consensus 6 ~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~-----~--g~~~~~~~Dv~d~~~v~~~~~~ 78 (271)
T PRK06505 6 QGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKRVKPLAES-----L--GSDFVLPCDVEDIASVDAVFEA 78 (271)
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHHHh-----c--CCceEEeCCCCCHHHHHHHHHH
Confidence 457788888775 356666666552 234777777664333333322222 1 1123566777651 222211
Q ss_pred -hccCCceeEEecCccc
Q psy5757 104 -MMKFDRYDFLPHAPAE 119 (139)
Q Consensus 104 -~~~~~~~D~vi~~~~~ 119 (139)
....+++|+++.|...
T Consensus 79 ~~~~~g~iD~lVnnAG~ 95 (271)
T PRK06505 79 LEKKWGKLDFVVHAIGF 95 (271)
T ss_pred HHHHhCCCCEEEECCcc
Confidence 1134679999988764
No 466
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=72.06 E-value=30 Score=24.04 Aligned_cols=82 Identities=11% Similarity=0.173 Sum_probs=47.8
Q ss_pred CCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhhh--
Q psy5757 30 NSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVELM-- 104 (139)
Q Consensus 30 ~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~-- 104 (139)
++++|-.|+ +|..+..+++.+. ...+|+.+.-++...+.....+... ..++.++..|+.+. +.+....
T Consensus 5 ~~~ilItGa-sg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~~~~ 77 (246)
T PRK05653 5 GKTALVTGA-SRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAA------GGEARVLVFDVSDEAAVRALIEAAV 77 (246)
T ss_pred CCEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhc------CCceEEEEccCCCHHHHHHHHHHHH
Confidence 457887765 7888888777652 2237888888876655544444320 13577777887651 1111111
Q ss_pred ccCCceeEEecCcc
Q psy5757 105 MKFDRYDFLPHAPA 118 (139)
Q Consensus 105 ~~~~~~D~vi~~~~ 118 (139)
.....+|.++.+..
T Consensus 78 ~~~~~id~vi~~ag 91 (246)
T PRK05653 78 EAFGALDILVNNAG 91 (246)
T ss_pred HHhCCCCEEEECCC
Confidence 11245788888764
No 467
>PRK06179 short chain dehydrogenase; Provisional
Probab=71.94 E-value=24 Score=25.28 Aligned_cols=75 Identities=15% Similarity=0.189 Sum_probs=44.0
Q ss_pred CCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--h
Q psy5757 30 NSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL--M 104 (139)
Q Consensus 30 ~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~--~ 104 (139)
++.++-.| |+|..+..+++.+. ...+|++++-++.... . ..+++++..|+.+. +.++.. .
T Consensus 4 ~~~vlVtG-asg~iG~~~a~~l~~~g~~V~~~~r~~~~~~-------~-------~~~~~~~~~D~~d~~~~~~~~~~~~ 68 (270)
T PRK06179 4 SKVALVTG-ASSGIGRATAEKLARAGYRVFGTSRNPARAA-------P-------IPGVELLELDVTDDASVQAAVDEVI 68 (270)
T ss_pred CCEEEEec-CCCHHHHHHHHHHHHCCCEEEEEeCChhhcc-------c-------cCCCeeEEeecCCHHHHHHHHHHHH
Confidence 34677666 56777777777652 2347888887753221 1 14567777787651 222111 1
Q ss_pred ccCCceeEEecCccc
Q psy5757 105 MKFDRYDFLPHAPAE 119 (139)
Q Consensus 105 ~~~~~~D~vi~~~~~ 119 (139)
...+.+|+++.+...
T Consensus 69 ~~~g~~d~li~~ag~ 83 (270)
T PRK06179 69 ARAGRIDVLVNNAGV 83 (270)
T ss_pred HhCCCCCEEEECCCC
Confidence 124568999988864
No 468
>PRK07201 short chain dehydrogenase; Provisional
Probab=71.73 E-value=45 Score=27.46 Aligned_cols=83 Identities=11% Similarity=0.153 Sum_probs=50.1
Q ss_pred CCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--h
Q psy5757 30 NSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL--M 104 (139)
Q Consensus 30 ~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~--~ 104 (139)
++.+|-.| |+|..+..+++.+. ...+|+.++.+++.++...+.+... ..++.++..|+.+. +.++.. .
T Consensus 371 ~k~vlItG-as~giG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~Dv~~~~~~~~~~~~~~ 443 (657)
T PRK07201 371 GKVVLITG-ASSGIGRATAIKVAEAGATVFLVARNGEALDELVAEIRAK------GGTAHAYTCDLTDSAAVDHTVKDIL 443 (657)
T ss_pred CCEEEEeC-CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc------CCcEEEEEecCCCHHHHHHHHHHHH
Confidence 45666655 45667777766552 2348999998887766665554431 14677888887751 121111 1
Q ss_pred ccCCceeEEecCccc
Q psy5757 105 MKFDRYDFLPHAPAE 119 (139)
Q Consensus 105 ~~~~~~D~vi~~~~~ 119 (139)
...+.+|+++.|...
T Consensus 444 ~~~g~id~li~~Ag~ 458 (657)
T PRK07201 444 AEHGHVDYLVNNAGR 458 (657)
T ss_pred HhcCCCCEEEECCCC
Confidence 123468999988763
No 469
>KOG2539|consensus
Probab=71.36 E-value=5 Score=32.14 Aligned_cols=87 Identities=15% Similarity=0.105 Sum_probs=53.2
Q ss_pred CeEEEEcccCChhHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhccCC
Q psy5757 31 SKVLEIGSGSGYLTNMISELMNS-TGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMKFD 108 (139)
Q Consensus 31 ~~iLdiG~G~G~~~~~l~~~~~~-~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~ 108 (139)
..+.|+|.|.|...-.+...+.- .-.+..+|-+..+.....+.+.. .. .+..++.... +.+...+....
T Consensus 202 d~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~------~g~~~v~~~~---~~r~~~pi~~~ 272 (491)
T KOG2539|consen 202 DLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSH------IGEPIVRKLV---FHRQRLPIDIK 272 (491)
T ss_pred HHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhh------cCchhccccc---hhcccCCCCcc
Confidence 46788998877665555554431 23788999999999998888765 21 1111222200 11111222233
Q ss_pred -ceeEEecCccccccccce
Q psy5757 109 -RYDFLPHAPAESWMNIPV 126 (139)
Q Consensus 109 -~~D~vi~~~~~~~~~~p~ 126 (139)
.||++++...+|++..+.
T Consensus 273 ~~yDlvi~ah~l~~~~s~~ 291 (491)
T KOG2539|consen 273 NGYDLVICAHKLHELGSKF 291 (491)
T ss_pred cceeeEEeeeeeeccCCch
Confidence 499999999988877654
No 470
>PRK05855 short chain dehydrogenase; Validated
Probab=71.16 E-value=52 Score=26.34 Aligned_cols=83 Identities=7% Similarity=0.028 Sum_probs=50.5
Q ss_pred CCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--h
Q psy5757 30 NSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL--M 104 (139)
Q Consensus 30 ~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~--~ 104 (139)
++.+|-.|+ +|..+..+++.+. ...+|+.++.+++..+.+.+.+... ..++.++..|+.+. +..+.. .
T Consensus 315 ~~~~lv~G~-s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~Dv~~~~~~~~~~~~~~ 387 (582)
T PRK05855 315 GKLVVVTGA-GSGIGRETALAFAREGAEVVASDIDEAAAERTAELIRAA------GAVAHAYRVDVSDADAMEAFAEWVR 387 (582)
T ss_pred CCEEEEECC-cCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCeEEEEEcCCCCHHHHHHHHHHHH
Confidence 456776654 6777777766652 2347888898877766655555431 13677888888762 122111 1
Q ss_pred ccCCceeEEecCccc
Q psy5757 105 MKFDRYDFLPHAPAE 119 (139)
Q Consensus 105 ~~~~~~D~vi~~~~~ 119 (139)
...+.+|+++.|...
T Consensus 388 ~~~g~id~lv~~Ag~ 402 (582)
T PRK05855 388 AEHGVPDIVVNNAGI 402 (582)
T ss_pred HhcCCCcEEEECCcc
Confidence 123568999998754
No 471
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=70.94 E-value=36 Score=24.45 Aligned_cols=84 Identities=18% Similarity=0.126 Sum_probs=43.0
Q ss_pred CCCeEEEEcccCC-hhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh-
Q psy5757 29 ENSKVLEIGSGSG-YLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL- 103 (139)
Q Consensus 29 ~~~~iLdiG~G~G-~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~- 103 (139)
.++.+|--|+++| +.+..+++.+. ..++|+..+.++...+.+++.... + ....++..|+.+. ++++..
T Consensus 7 ~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~~~~~~~~~l~~~-----~--g~~~~~~~Dv~~~~~v~~~~~~ 79 (260)
T PRK06603 7 QGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSEVLEKRVKPLAEE-----I--GCNFVSELDVTNPKSISNLFDD 79 (260)
T ss_pred CCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCchHHHHHHHHHHHh-----c--CCceEEEccCCCHHHHHHHHHH
Confidence 4567888888764 46666655542 234777777664322222222222 0 1122455676651 222211
Q ss_pred -hccCCceeEEecCccc
Q psy5757 104 -MMKFDRYDFLPHAPAE 119 (139)
Q Consensus 104 -~~~~~~~D~vi~~~~~ 119 (139)
...++.+|+++.|...
T Consensus 80 ~~~~~g~iDilVnnag~ 96 (260)
T PRK06603 80 IKEKWGSFDFLLHGMAF 96 (260)
T ss_pred HHHHcCCccEEEEcccc
Confidence 1235679999987753
No 472
>PRK12828 short chain dehydrogenase; Provisional
Probab=70.94 E-value=32 Score=23.84 Aligned_cols=80 Identities=14% Similarity=0.192 Sum_probs=45.0
Q ss_pred CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHh---h-
Q psy5757 29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVE---L- 103 (139)
Q Consensus 29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~---~- 103 (139)
+++.+|-.| |+|..+..+++.+- ...+|+.++-++.......+.+.. ...++...|+.+ .+++. .
T Consensus 6 ~~k~vlItG-atg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~--------~~~~~~~~D~~~-~~~~~~~~~~ 75 (239)
T PRK12828 6 QGKVVAITG-GFGGLGRATAAWLAARGARVALIGRGAAPLSQTLPGVPA--------DALRIGGIDLVD-PQAARRAVDE 75 (239)
T ss_pred CCCEEEEEC-CCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHHHhh--------cCceEEEeecCC-HHHHHHHHHH
Confidence 356777766 55777777777652 234789998876544433333322 234566677654 22211 1
Q ss_pred -hccCCceeEEecCcc
Q psy5757 104 -MMKFDRYDFLPHAPA 118 (139)
Q Consensus 104 -~~~~~~~D~vi~~~~ 118 (139)
....+.+|+|+.+..
T Consensus 76 ~~~~~~~~d~vi~~ag 91 (239)
T PRK12828 76 VNRQFGRLDALVNIAG 91 (239)
T ss_pred HHHHhCCcCEEEECCc
Confidence 112346899887754
No 473
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=70.73 E-value=36 Score=24.33 Aligned_cols=84 Identities=13% Similarity=0.071 Sum_probs=44.3
Q ss_pred CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEe-CCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh-
Q psy5757 29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIE-HVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL- 103 (139)
Q Consensus 29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d-~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~- 103 (139)
+++.+|-.|++ +..+..+++.+. ...+|+.+. .+++.++...+.+.... ..++.++..|+.+. +.++..
T Consensus 7 ~~k~vlItGas-~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~ 80 (260)
T PRK08416 7 KGKTLVISGGT-RGIGKAIVYEFAQSGVNIAFTYNSNVEEANKIAEDLEQKY-----GIKAKAYPLNILEPETYKELFKK 80 (260)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHhc-----CCceEEEEcCCCCHHHHHHHHHH
Confidence 45677766654 555555555442 233666654 34444444433332210 14677888887762 222111
Q ss_pred -hccCCceeEEecCcc
Q psy5757 104 -MMKFDRYDFLPHAPA 118 (139)
Q Consensus 104 -~~~~~~~D~vi~~~~ 118 (139)
....+++|+++.|..
T Consensus 81 ~~~~~g~id~lv~nAg 96 (260)
T PRK08416 81 IDEDFDRVDFFISNAI 96 (260)
T ss_pred HHHhcCCccEEEECcc
Confidence 123467899998874
No 474
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=70.57 E-value=35 Score=24.15 Aligned_cols=77 Identities=16% Similarity=0.195 Sum_probs=43.9
Q ss_pred eEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--hcc
Q psy5757 32 KVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL--MMK 106 (139)
Q Consensus 32 ~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~--~~~ 106 (139)
+++-.| |+|..+..+++.+. ...+|+.++.+++.++...... ..+++++..|+.+. +.+... ...
T Consensus 2 ~vlItG-asg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~---------~~~~~~~~~Dl~~~~~i~~~~~~~~~~ 71 (248)
T PRK10538 2 IVLVTG-ATAGFGECITRRFIQQGHKVIATGRRQERLQELKDEL---------GDNLYIAQLDVRNRAAIEEMLASLPAE 71 (248)
T ss_pred EEEEEC-CCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh---------ccceEEEEecCCCHHHHHHHHHHHHHH
Confidence 455554 56666777776652 2348999998876554433322 13577777887652 121111 112
Q ss_pred CCceeEEecCcc
Q psy5757 107 FDRYDFLPHAPA 118 (139)
Q Consensus 107 ~~~~D~vi~~~~ 118 (139)
.+.+|.++.+..
T Consensus 72 ~~~id~vi~~ag 83 (248)
T PRK10538 72 WRNIDVLVNNAG 83 (248)
T ss_pred cCCCCEEEECCC
Confidence 346899987764
No 475
>PRK06182 short chain dehydrogenase; Validated
Probab=70.34 E-value=37 Score=24.39 Aligned_cols=77 Identities=13% Similarity=0.092 Sum_probs=44.8
Q ss_pred CCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--h
Q psy5757 30 NSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL--M 104 (139)
Q Consensus 30 ~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~--~ 104 (139)
++.++-.| |+|..+..+++.+ ....+|++++-+++.++... . .+++++..|+.+. +..+.. .
T Consensus 3 ~k~vlItG-asggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~----~--------~~~~~~~~Dv~~~~~~~~~~~~~~ 69 (273)
T PRK06182 3 KKVALVTG-ASSGIGKATARRLAAQGYTVYGAARRVDKMEDLA----S--------LGVHPLSLDVTDEASIKAAVDTII 69 (273)
T ss_pred CCEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH----h--------CCCeEEEeeCCCHHHHHHHHHHHH
Confidence 45677666 4666777777765 22348898888765443221 1 3466777777651 111111 1
Q ss_pred ccCCceeEEecCccc
Q psy5757 105 MKFDRYDFLPHAPAE 119 (139)
Q Consensus 105 ~~~~~~D~vi~~~~~ 119 (139)
.....+|+++.+...
T Consensus 70 ~~~~~id~li~~ag~ 84 (273)
T PRK06182 70 AEEGRIDVLVNNAGY 84 (273)
T ss_pred HhcCCCCEEEECCCc
Confidence 123468999988764
No 476
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=70.32 E-value=36 Score=24.18 Aligned_cols=82 Identities=11% Similarity=0.118 Sum_probs=44.6
Q ss_pred CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--
Q psy5757 29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL-- 103 (139)
Q Consensus 29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~-- 103 (139)
+++.+|-.| |+|..+..+++.+. ...+|+.++.++. .....+.+... ..++.++..|+.+. ...+..
T Consensus 7 ~~k~vlVtG-as~gIG~~la~~l~~~G~~v~~~~r~~~-~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~~~ 78 (260)
T PRK12823 7 AGKVVVVTG-AAQGIGRGVALRAAAEGARVVLVDRSEL-VHEVAAELRAA------GGEALALTADLETYAGAQAAMAAA 78 (260)
T ss_pred CCCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEeCchH-HHHHHHHHHhc------CCeEEEEEEeCCCHHHHHHHHHHH
Confidence 346777776 45566666666552 2348888888753 33333333220 13566777777651 111111
Q ss_pred hccCCceeEEecCcc
Q psy5757 104 MMKFDRYDFLPHAPA 118 (139)
Q Consensus 104 ~~~~~~~D~vi~~~~ 118 (139)
....+.+|+++.|..
T Consensus 79 ~~~~~~id~lv~nAg 93 (260)
T PRK12823 79 VEAFGRIDVLINNVG 93 (260)
T ss_pred HHHcCCCeEEEECCc
Confidence 112356899998874
No 477
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=70.00 E-value=53 Score=25.96 Aligned_cols=104 Identities=15% Similarity=0.135 Sum_probs=54.9
Q ss_pred HHHHHHHhccc--C-CCCCeEEEEcccCChhHH-HHHHHcCCCceEEEEeCCHHHHH------------HHHHHHHhhcc
Q psy5757 16 ILTYLSIIQPH--L-NENSKVLEIGSGSGYLTN-MISELMNSTGQVIGIEHVPQLVN------------SSIQNILHSNA 79 (139)
Q Consensus 16 ~~~~~~~l~~~--~-~~~~~iLdiG~G~G~~~~-~l~~~~~~~~~v~~~d~~~~~~~------------~a~~~~~~~~~ 79 (139)
+...++..... . ..++++|-.|+.+|.-.. .+++.+...+.+++++...+..+ ...+.+..
T Consensus 24 v~~qi~~~~~~~~~~~ggK~aLVTGaSsGIGlA~~IA~al~~GA~Vi~v~~~~~~~~~~~~tagwy~~~a~~~~a~~--- 100 (398)
T PRK13656 24 VKEQIEYVKAQGPIANGPKKVLVIGASSGYGLASRIAAAFGAGADTLGVFFEKPGTEKKTGTAGWYNSAAFDKFAKA--- 100 (398)
T ss_pred HHHHHHHHHhcCCcCCCCCEEEEECCCchHhHHHHHHHHHHcCCeEEEEecCcchhhhcccccccchHHHHHHHHHh---
Confidence 44445554322 2 345788999988775333 15555533457777775321111 12222222
Q ss_pred ccccCCcEEEEEccchhh--hHHHh--hhccCCceeEEecCccccccccc
Q psy5757 80 RLLTDGHIKFVALGMIKR--IETVE--LMMKFDRYDFLPHAPAESWMNIP 125 (139)
Q Consensus 80 ~~~~~~~i~~~~~d~~~~--~~~~~--~~~~~~~~D~vi~~~~~~~~~~p 125 (139)
.+ ..+..+.+|+.+. ..++. .....+++|+++.+..+....+|
T Consensus 101 --~G-~~a~~i~~DVss~E~v~~lie~I~e~~G~IDiLVnSaA~~~r~~p 147 (398)
T PRK13656 101 --AG-LYAKSINGDAFSDEIKQKVIELIKQDLGQVDLVVYSLASPRRTDP 147 (398)
T ss_pred --cC-CceEEEEcCCCCHHHHHHHHHHHHHhcCCCCEEEECCccCCCCCc
Confidence 00 2345677787651 11111 11235789999999987766665
No 478
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=69.72 E-value=27 Score=27.67 Aligned_cols=44 Identities=16% Similarity=0.037 Sum_probs=31.2
Q ss_pred CCCCCeEEEEcccC-ChhHHHHHHHcCCCceEEEEeCCHHHHHHHHH
Q psy5757 27 LNENSKVLEIGSGS-GYLTNMISELMNSTGQVIGIEHVPQLVNSSIQ 72 (139)
Q Consensus 27 ~~~~~~iLdiG~G~-G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~ 72 (139)
..++++|+-+|+|. |......++..+ ++|+.+|.++.....|++
T Consensus 199 ~l~GktVvViG~G~IG~~va~~ak~~G--a~ViV~d~d~~R~~~A~~ 243 (413)
T cd00401 199 MIAGKVAVVAGYGDVGKGCAQSLRGQG--ARVIVTEVDPICALQAAM 243 (413)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEECChhhHHHHHh
Confidence 46789999999995 344444555554 389999999877666654
No 479
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=69.67 E-value=43 Score=24.81 Aligned_cols=84 Identities=10% Similarity=0.046 Sum_probs=45.5
Q ss_pred CCCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCC-HHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh
Q psy5757 28 NENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHV-PQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL 103 (139)
Q Consensus 28 ~~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~-~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~ 103 (139)
.+++.+|-.|++. ..+..+++.+- ...+|+..+.. +...+.+.+.+... ..++.++..|+.+. ..++..
T Consensus 10 l~~k~~lVTGas~-gIG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~~------g~~~~~~~~Dv~d~~~~~~~~~ 82 (306)
T PRK07792 10 LSGKVAVVTGAAA-GLGRAEALGLARLGATVVVNDVASALDASDVLDEIRAA------GAKAVAVAGDISQRATADELVA 82 (306)
T ss_pred CCCCEEEEECCCC-hHHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHhc------CCeEEEEeCCCCCHHHHHHHHH
Confidence 3567788777654 44555555442 23478888764 23333333333320 14677888887751 222211
Q ss_pred h-ccCCceeEEecCcc
Q psy5757 104 M-MKFDRYDFLPHAPA 118 (139)
Q Consensus 104 ~-~~~~~~D~vi~~~~ 118 (139)
. ...+++|++|.|..
T Consensus 83 ~~~~~g~iD~li~nAG 98 (306)
T PRK07792 83 TAVGLGGLDIVVNNAG 98 (306)
T ss_pred HHHHhCCCCEEEECCC
Confidence 1 11467899998875
No 480
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=69.41 E-value=31 Score=24.18 Aligned_cols=33 Identities=27% Similarity=0.351 Sum_probs=19.9
Q ss_pred CCCeEEEEccc-CCh-hHHHHHHHcCCCceEEEEeCC
Q psy5757 29 ENSKVLEIGSG-SGY-LTNMISELMNSTGQVIGIEHV 63 (139)
Q Consensus 29 ~~~~iLdiG~G-~G~-~~~~l~~~~~~~~~v~~~d~~ 63 (139)
...+|+-+||| .|. ....|++.. . ++++-+|.+
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~G-v-~~i~lvD~d 54 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAG-V-GTIVIVDDD 54 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcC-C-CeEEEecCC
Confidence 34689999987 343 333333333 2 378888866
No 481
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=69.25 E-value=44 Score=24.79 Aligned_cols=45 Identities=16% Similarity=0.246 Sum_probs=32.3
Q ss_pred cCCCCCeEEEEcccC-ChhHHHHHHHcCCCceEEEEeCCHHHHHHHHH
Q psy5757 26 HLNENSKVLEIGSGS-GYLTNMISELMNSTGQVIGIEHVPQLVNSSIQ 72 (139)
Q Consensus 26 ~~~~~~~iLdiG~G~-G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~ 72 (139)
.+.++.+||-.|+|. |.....+++..+. +++++..+++..+.+++
T Consensus 156 ~l~~g~~vLI~g~g~vG~~a~~lA~~~g~--~v~~~~~s~~~~~~~~~ 201 (337)
T cd08261 156 GVTAGDTVLVVGAGPIGLGVIQVAKARGA--RVIVVDIDDERLEFARE 201 (337)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC--eEEEECCCHHHHHHHHH
Confidence 367888999888653 5666777777653 88888888777776643
No 482
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=69.16 E-value=29 Score=24.49 Aligned_cols=77 Identities=16% Similarity=0.269 Sum_probs=44.3
Q ss_pred ccc-CChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchh--hhHHHh--hhccC-Cc
Q psy5757 37 GSG-SGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIK--RIETVE--LMMKF-DR 109 (139)
Q Consensus 37 G~G-~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~--~~~~~~--~~~~~-~~ 109 (139)
|+| ++..+..+++.+- ..++|+..+.+++.++.+.+.+.... ...++..|+.+ .+..+. ..... +.
T Consensus 1 g~~~s~GiG~aia~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~D~~~~~~v~~~~~~~~~~~~g~ 73 (241)
T PF13561_consen 1 GAGSSSGIGRAIARALAEEGANVILTDRNEEKLADALEELAKEY-------GAEVIQCDLSDEESVEALFDEAVERFGGR 73 (241)
T ss_dssp STSSTSHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHHHT-------TSEEEESCTTSHHHHHHHHHHHHHHHCSS
T ss_pred CCCCCCChHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHHHc-------CCceEeecCcchHHHHHHHHHHHhhcCCC
Confidence 444 4566666666552 34599999999887655544444311 12357788764 222221 11124 78
Q ss_pred eeEEecCcccc
Q psy5757 110 YDFLPHAPAES 120 (139)
Q Consensus 110 ~D~vi~~~~~~ 120 (139)
+|+++.+....
T Consensus 74 iD~lV~~a~~~ 84 (241)
T PF13561_consen 74 IDILVNNAGIS 84 (241)
T ss_dssp ESEEEEEEESC
T ss_pred eEEEEeccccc
Confidence 99998876533
No 483
>KOG1371|consensus
Probab=69.13 E-value=44 Score=25.75 Aligned_cols=76 Identities=20% Similarity=0.222 Sum_probs=42.2
Q ss_pred CeEEEEcccCCh----hHHHHHHHcCCCceEEEEeC-C---HHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHh
Q psy5757 31 SKVLEIGSGSGY----LTNMISELMNSTGQVIGIEH-V---PQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVE 102 (139)
Q Consensus 31 ~~iLdiG~G~G~----~~~~l~~~~~~~~~v~~~d~-~---~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 102 (139)
.+||-.| |.|+ .++.|.++.- .|+++|. + .+.+..+++.+.. ...+.+..+|..+ .+.+.
T Consensus 3 ~~VLVtG-gaGyiGsht~l~L~~~gy---~v~~vDNl~n~~~~sl~r~~~l~~~-------~~~v~f~~~Dl~D-~~~L~ 70 (343)
T KOG1371|consen 3 KHVLVTG-GAGYIGSHTVLALLKRGY---GVVIVDNLNNSYLESLKRVRQLLGE-------GKSVFFVEGDLND-AEALE 70 (343)
T ss_pred cEEEEec-CCcceehHHHHHHHhCCC---cEEEEecccccchhHHHHHHHhcCC-------CCceEEEEeccCC-HHHHH
Confidence 4566554 4454 3444555544 8999993 2 2233333333222 3679999999887 33333
Q ss_pred hhccCCceeEEecCcc
Q psy5757 103 LMMKFDRYDFLPHAPA 118 (139)
Q Consensus 103 ~~~~~~~~D~vi~~~~ 118 (139)
.-.+...||.|++...
T Consensus 71 kvF~~~~fd~V~Hfa~ 86 (343)
T KOG1371|consen 71 KLFSEVKFDAVMHFAA 86 (343)
T ss_pred HHHhhcCCceEEeehh
Confidence 3333445787776654
No 484
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=69.09 E-value=38 Score=24.03 Aligned_cols=83 Identities=8% Similarity=0.015 Sum_probs=45.8
Q ss_pred CCCeEEEEcccC-ChhHHHHHHHcC-CCceEEEEeCC------------HHHHHHHHHHHHhhccccccCCcEEEEEccc
Q psy5757 29 ENSKVLEIGSGS-GYLTNMISELMN-STGQVIGIEHV------------PQLVNSSIQNILHSNARLLTDGHIKFVALGM 94 (139)
Q Consensus 29 ~~~~iLdiG~G~-G~~~~~l~~~~~-~~~~v~~~d~~------------~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~ 94 (139)
.++.+|-.|++. |..+..+++.+. ...+|+.++.+ ++... ..+.+.. . ..+++++..|+
T Consensus 4 ~~k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~-~-----~~~~~~~~~D~ 76 (256)
T PRK12748 4 MKKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWSPYDKTMPWGMHDKEPVL-LKEEIES-Y-----GVRCEHMEIDL 76 (256)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCCccccccccccchhhHHH-HHHHHHh-c-----CCeEEEEECCC
Confidence 346788888764 577777776662 23478877654 22222 2222222 0 14678888887
Q ss_pred hhhh--HHHh--hhccCCceeEEecCcc
Q psy5757 95 IKRI--ETVE--LMMKFDRYDFLPHAPA 118 (139)
Q Consensus 95 ~~~~--~~~~--~~~~~~~~D~vi~~~~ 118 (139)
.+.- .... .....+.+|+++.+..
T Consensus 77 ~~~~~~~~~~~~~~~~~g~id~vi~~ag 104 (256)
T PRK12748 77 SQPYAPNRVFYAVSERLGDPSILINNAA 104 (256)
T ss_pred CCHHHHHHHHHHHHHhCCCCCEEEECCC
Confidence 7621 1111 1112356899988875
No 485
>PRK08303 short chain dehydrogenase; Provisional
Probab=68.77 E-value=46 Score=24.79 Aligned_cols=82 Identities=12% Similarity=0.102 Sum_probs=44.8
Q ss_pred CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCH----------HHHHHHHHHHHhhccccccCCcEEEEEccchhh
Q psy5757 29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVP----------QLVNSSIQNILHSNARLLTDGHIKFVALGMIKR 97 (139)
Q Consensus 29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~----------~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~ 97 (139)
.++.+|-.|+++| .+..+++.+- ...+|+.++.+. +.++.+.+.+... ..++.++..|+.+.
T Consensus 7 ~~k~~lITGgs~G-IG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~------~~~~~~~~~Dv~~~ 79 (305)
T PRK08303 7 RGKVALVAGATRG-AGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAA------GGRGIAVQVDHLVP 79 (305)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhc------CCceEEEEcCCCCH
Confidence 4567777775544 5666666552 234788877652 2333333333330 13466677787651
Q ss_pred --hHHHhh--hccCCceeEEecCc
Q psy5757 98 --IETVEL--MMKFDRYDFLPHAP 117 (139)
Q Consensus 98 --~~~~~~--~~~~~~~D~vi~~~ 117 (139)
+.++.. ...++.+|++|.|.
T Consensus 80 ~~v~~~~~~~~~~~g~iDilVnnA 103 (305)
T PRK08303 80 EQVRALVERIDREQGRLDILVNDI 103 (305)
T ss_pred HHHHHHHHHHHHHcCCccEEEECC
Confidence 222211 11346789999886
No 486
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=68.72 E-value=43 Score=24.90 Aligned_cols=80 Identities=20% Similarity=0.231 Sum_probs=39.2
Q ss_pred eEEEEcccCChhHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhhhHHHhhhccCCce
Q psy5757 32 KVLEIGSGSGYLTNMISELMNS-TGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKFDRY 110 (139)
Q Consensus 32 ~iLdiG~G~G~~~~~l~~~~~~-~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~~~~ 110 (139)
+||-.| |+|..+..+++.+.. .-+|++++............+.. +...++.++.+|+.+ ...+..-.....+
T Consensus 2 ~vlVtG-atG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~Dl~d-~~~~~~~~~~~~~ 74 (338)
T PRK10675 2 RVLVTG-GSGYIGSHTCVQLLQNGHDVVILDNLCNSKRSVLPVIER-----LGGKHPTFVEGDIRN-EALLTEILHDHAI 74 (338)
T ss_pred eEEEEC-CCChHHHHHHHHHHHCCCeEEEEecCCCchHhHHHHHHH-----hcCCCceEEEccCCC-HHHHHHHHhcCCC
Confidence 455443 578888888776522 23788876421111111111111 011356677788765 2222111112357
Q ss_pred eEEecCcc
Q psy5757 111 DFLPHAPA 118 (139)
Q Consensus 111 D~vi~~~~ 118 (139)
|+|+.+..
T Consensus 75 d~vvh~a~ 82 (338)
T PRK10675 75 DTVIHFAG 82 (338)
T ss_pred CEEEECCc
Confidence 99887754
No 487
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=68.50 E-value=68 Score=27.03 Aligned_cols=85 Identities=8% Similarity=0.137 Sum_probs=50.1
Q ss_pred CCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--h
Q psy5757 30 NSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL--M 104 (139)
Q Consensus 30 ~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~--~ 104 (139)
++.+|-.| |+|..+..+++.+- ...+|+.++.++...+...+.+... ....++..+..|+.+. +..+.. .
T Consensus 414 gkvvLVTG-asggIG~aiA~~La~~Ga~Vvi~~r~~~~~~~~~~~l~~~----~~~~~~~~v~~Dvtd~~~v~~a~~~i~ 488 (676)
T TIGR02632 414 RRVAFVTG-GAGGIGRETARRLAAEGAHVVLADLNLEAAEAVAAEINGQ----FGAGRAVALKMDVTDEQAVKAAFADVA 488 (676)
T ss_pred CCEEEEeC-CCcHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhh----cCCCcEEEEECCCCCHHHHHHHHHHHH
Confidence 45666655 46666777766552 2358999999987766655544320 0113566777887751 221111 1
Q ss_pred ccCCceeEEecCccc
Q psy5757 105 MKFDRYDFLPHAPAE 119 (139)
Q Consensus 105 ~~~~~~D~vi~~~~~ 119 (139)
..++.+|++|+|...
T Consensus 489 ~~~g~iDilV~nAG~ 503 (676)
T TIGR02632 489 LAYGGVDIVVNNAGI 503 (676)
T ss_pred HhcCCCcEEEECCCC
Confidence 124568999888864
No 488
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=68.44 E-value=17 Score=27.27 Aligned_cols=44 Identities=14% Similarity=0.277 Sum_probs=30.6
Q ss_pred CCCCeEEEEccc-CChhHHHHHHHcCCCceEEEEeCCHHHHHHHHH
Q psy5757 28 NENSKVLEIGSG-SGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQ 72 (139)
Q Consensus 28 ~~~~~iLdiG~G-~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~ 72 (139)
.++.+||-.|+| .|..+..+++..+. .++++++.+++.++.+++
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G~-~~Vi~~~~~~~~~~~a~~ 212 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLGA-AEIVCADVSPRSLSLARE 212 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEEeCCHHHHHHHHH
Confidence 467889888865 34455556666542 268999999888887765
No 489
>PLN02240 UDP-glucose 4-epimerase
Probab=68.25 E-value=48 Score=24.79 Aligned_cols=84 Identities=15% Similarity=0.286 Sum_probs=43.4
Q ss_pred CCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhccC
Q psy5757 30 NSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMKF 107 (139)
Q Consensus 30 ~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~~ 107 (139)
+++||-.| |+|.++..+++.+. ...+|++++............... .. ....++.++.+|+.+ ...+..-...
T Consensus 5 ~~~vlItG-atG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~D~~~-~~~l~~~~~~ 79 (352)
T PLN02240 5 GRTILVTG-GAGYIGSHTVLQLLLAGYKVVVIDNLDNSSEEALRRVKELAG---DLGDNLVFHKVDLRD-KEALEKVFAS 79 (352)
T ss_pred CCEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCCcchHHHHHHHHHhhc---ccCccceEEecCcCC-HHHHHHHHHh
Confidence 46777666 67888888877652 224788887532211111111111 00 001357788888775 2222111111
Q ss_pred CceeEEecCcc
Q psy5757 108 DRYDFLPHAPA 118 (139)
Q Consensus 108 ~~~D~vi~~~~ 118 (139)
..+|.|+....
T Consensus 80 ~~~d~vih~a~ 90 (352)
T PLN02240 80 TRFDAVIHFAG 90 (352)
T ss_pred CCCCEEEEccc
Confidence 25788877664
No 490
>PRK05993 short chain dehydrogenase; Provisional
Probab=68.19 E-value=43 Score=24.24 Aligned_cols=76 Identities=14% Similarity=0.083 Sum_probs=44.5
Q ss_pred CCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhhh--
Q psy5757 30 NSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVELM-- 104 (139)
Q Consensus 30 ~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~-- 104 (139)
++.+|-.|+ +|..+..+++.+. ...+|+.++-+++.++... . .+++++..|+.+. +.++...
T Consensus 4 ~k~vlItGa-sggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~----~--------~~~~~~~~Dl~d~~~~~~~~~~~~ 70 (277)
T PRK05993 4 KRSILITGC-SSGIGAYCARALQSDGWRVFATCRKEEDVAALE----A--------EGLEAFQLDYAEPESIAALVAQVL 70 (277)
T ss_pred CCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH----H--------CCceEEEccCCCHHHHHHHHHHHH
Confidence 456777775 5677777776552 2348999988876554332 1 2456677777652 2221111
Q ss_pred -ccCCceeEEecCcc
Q psy5757 105 -MKFDRYDFLPHAPA 118 (139)
Q Consensus 105 -~~~~~~D~vi~~~~ 118 (139)
...+.+|+++.|..
T Consensus 71 ~~~~g~id~li~~Ag 85 (277)
T PRK05993 71 ELSGGRLDALFNNGA 85 (277)
T ss_pred HHcCCCccEEEECCC
Confidence 11246899998864
No 491
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=67.39 E-value=43 Score=24.00 Aligned_cols=85 Identities=14% Similarity=0.110 Sum_probs=45.1
Q ss_pred CCCeEEEEccc-CChhHHHHHHHcCC-CceEEEEeCCHH--HHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHh
Q psy5757 29 ENSKVLEIGSG-SGYLTNMISELMNS-TGQVIGIEHVPQ--LVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVE 102 (139)
Q Consensus 29 ~~~~iLdiG~G-~G~~~~~l~~~~~~-~~~v~~~d~~~~--~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~ 102 (139)
.++.+|-.|++ ++..+..+++.+.. ..+|+....+.+ ..+...+.+... ..+..++..|+.+. +..+.
T Consensus 5 ~~k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~Dl~d~~~v~~~~ 78 (258)
T PRK07370 5 TGKKALVTGIANNRSIAWGIAQQLHAAGAELGITYLPDEKGRFEKKVRELTEP------LNPSLFLPCDVQDDAQIEETF 78 (258)
T ss_pred CCcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecCcccchHHHHHHHHHhc------cCcceEeecCcCCHHHHHHHH
Confidence 46788888985 67888888877632 346665543321 111111112110 12355667777651 22111
Q ss_pred h--hccCCceeEEecCccc
Q psy5757 103 L--MMKFDRYDFLPHAPAE 119 (139)
Q Consensus 103 ~--~~~~~~~D~vi~~~~~ 119 (139)
. ....+.+|+++.|...
T Consensus 79 ~~~~~~~g~iD~lv~nag~ 97 (258)
T PRK07370 79 ETIKQKWGKLDILVHCLAF 97 (258)
T ss_pred HHHHHHcCCCCEEEEcccc
Confidence 1 1134679999988764
No 492
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=67.12 E-value=43 Score=23.84 Aligned_cols=81 Identities=10% Similarity=0.199 Sum_probs=44.3
Q ss_pred CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--
Q psy5757 29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL-- 103 (139)
Q Consensus 29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~-- 103 (139)
+++.+|-.|+ ++..+..+++++- ...+|+.++.++. +.+.+..... ..++.++..|+.+. +..+..
T Consensus 7 ~~k~~lItGa-s~gIG~aia~~l~~~G~~vv~~~~~~~--~~~~~~~~~~------~~~~~~~~~Dl~~~~~~~~~~~~~ 77 (251)
T PRK12481 7 NGKVAIITGC-NTGLGQGMAIGLAKAGADIVGVGVAEA--PETQAQVEAL------GRKFHFITADLIQQKDIDSIVSQA 77 (251)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEecCchH--HHHHHHHHHc------CCeEEEEEeCCCCHHHHHHHHHHH
Confidence 4677887775 5556666666552 2347777765432 2222333220 14677788887761 222111
Q ss_pred hccCCceeEEecCcc
Q psy5757 104 MMKFDRYDFLPHAPA 118 (139)
Q Consensus 104 ~~~~~~~D~vi~~~~ 118 (139)
....+++|+++.|.-
T Consensus 78 ~~~~g~iD~lv~~ag 92 (251)
T PRK12481 78 VEVMGHIDILINNAG 92 (251)
T ss_pred HHHcCCCCEEEECCC
Confidence 112457899998875
No 493
>PRK05875 short chain dehydrogenase; Provisional
Probab=67.05 E-value=44 Score=23.98 Aligned_cols=85 Identities=9% Similarity=0.127 Sum_probs=48.1
Q ss_pred CCCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--
Q psy5757 29 ENSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL-- 103 (139)
Q Consensus 29 ~~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~-- 103 (139)
+++++|-.|+ +|..+..+++.+- ...+|+.++-+++..+...+.+... ....++.++..|+.+. +..+..
T Consensus 6 ~~k~vlItGa-sg~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~----~~~~~~~~~~~Dl~~~~~~~~~~~~~ 80 (276)
T PRK05875 6 QDRTYLVTGG-GSGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEAL----KGAGAVRYEPADVTDEDQVARAVDAA 80 (276)
T ss_pred CCCEEEEECC-CcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhc----cCCCceEEEEcCCCCHHHHHHHHHHH
Confidence 4578888774 4556666666552 2348888888866555444443320 0014677788887652 111111
Q ss_pred hccCCceeEEecCcc
Q psy5757 104 MMKFDRYDFLPHAPA 118 (139)
Q Consensus 104 ~~~~~~~D~vi~~~~ 118 (139)
....+.+|+++.+..
T Consensus 81 ~~~~~~~d~li~~ag 95 (276)
T PRK05875 81 TAWHGRLHGVVHCAG 95 (276)
T ss_pred HHHcCCCCEEEECCC
Confidence 112346899988774
No 494
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=66.98 E-value=42 Score=23.64 Aligned_cols=82 Identities=13% Similarity=0.129 Sum_probs=49.4
Q ss_pred CCeEEEEcccCChhHHHHHHHcC-CCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--h
Q psy5757 30 NSKVLEIGSGSGYLTNMISELMN-STGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL--M 104 (139)
Q Consensus 30 ~~~iLdiG~G~G~~~~~l~~~~~-~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~--~ 104 (139)
++.+|-.| |+|..+..+++.+- ...+++.++.++...+.....+... ..+++++..|+.+. +..+.. .
T Consensus 4 ~~~vlItG-~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~Dl~~~~~~~~~~~~~~ 76 (258)
T PRK12429 4 GKVALVTG-AASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKA------GGKAIGVAMDVTDEEAINAGIDYAV 76 (258)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhc------CCcEEEEEcCCCCHHHHHHHHHHHH
Confidence 35666554 57788888887662 2348889998877666655544331 14677888887751 111111 1
Q ss_pred ccCCceeEEecCcc
Q psy5757 105 MKFDRYDFLPHAPA 118 (139)
Q Consensus 105 ~~~~~~D~vi~~~~ 118 (139)
.....+|+++++..
T Consensus 77 ~~~~~~d~vi~~a~ 90 (258)
T PRK12429 77 ETFGGVDILVNNAG 90 (258)
T ss_pred HHcCCCCEEEECCC
Confidence 11245899988775
No 495
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=66.94 E-value=21 Score=26.73 Aligned_cols=44 Identities=16% Similarity=0.098 Sum_probs=31.8
Q ss_pred CCCCCeEEEEccc-CChhHHHHHHHcCCCceEEEEeCCHHHHHHHHH
Q psy5757 27 LNENSKVLEIGSG-SGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQ 72 (139)
Q Consensus 27 ~~~~~~iLdiG~G-~G~~~~~l~~~~~~~~~v~~~d~~~~~~~~a~~ 72 (139)
++++.++|-.|+| .|..+..+++..+ +++++++.+++..+.+++
T Consensus 163 ~~~g~~VlV~G~g~iG~~a~~~a~~~G--~~vi~~~~~~~~~~~a~~ 207 (329)
T TIGR02822 163 LPPGGRLGLYGFGGSAHLTAQVALAQG--ATVHVMTRGAAARRLALA 207 (329)
T ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHCC--CeEEEEeCChHHHHHHHH
Confidence 5788899999875 3445556666654 379999999887777655
No 496
>PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila. A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A.
Probab=66.79 E-value=17 Score=26.03 Aligned_cols=81 Identities=11% Similarity=0.124 Sum_probs=36.7
Q ss_pred ccCChhHHHHHHHc---CCCceEEEEeCCH---HHHHHHHHHHHh-hccccc---cCCcEEEEEccchhh---hHHHhhh
Q psy5757 38 SGSGYLTNMISELM---NSTGQVIGIEHVP---QLVNSSIQNILH-SNARLL---TDGHIKFVALGMIKR---IETVELM 104 (139)
Q Consensus 38 ~G~G~~~~~l~~~~---~~~~~v~~~d~~~---~~~~~a~~~~~~-~~~~~~---~~~~i~~~~~d~~~~---~~~~~~~ 104 (139)
-+||.++..+.+++ .+..+|+++--+. ...+..++.+.. ++.... ..++++++.+|+.+. +..-...
T Consensus 3 GaTGflG~~ll~~Ll~~~~~~~I~cLvR~~~~~~~~~rl~~~l~~~~~~~~~~~~~~~ri~~v~GDl~~~~lGL~~~~~~ 82 (249)
T PF07993_consen 3 GATGFLGSHLLEELLRQPPDVKIYCLVRASSSQSALERLKDALKEYGLWDDLDKEALSRIEVVEGDLSQPNLGLSDEDYQ 82 (249)
T ss_dssp -TTSHHHHHHHHHHHHHS-TTEEEEEE-SSSHHHHHHHHHGGG-SS-HHHHH-HHHTTTEEEEE--TTSGGGG--HHHHH
T ss_pred CCCcHHHHHHHHHHHcCCCCcEEEEEEeCcccccchhhhhhhcccccchhhhhhhhhccEEEEeccccccccCCChHHhh
Confidence 46888888887766 2212788887554 233333333322 110001 147999999998761 2110000
Q ss_pred ccCCceeEEecCcc
Q psy5757 105 MKFDRYDFLPHAPA 118 (139)
Q Consensus 105 ~~~~~~D~vi~~~~ 118 (139)
.-.+++|+|+++..
T Consensus 83 ~L~~~v~~IiH~Aa 96 (249)
T PF07993_consen 83 ELAEEVDVIIHCAA 96 (249)
T ss_dssp HHHHH--EEEE--S
T ss_pred ccccccceeeecch
Confidence 01135899988876
No 497
>PRK07825 short chain dehydrogenase; Provisional
Probab=66.43 E-value=46 Score=23.90 Aligned_cols=78 Identities=10% Similarity=0.021 Sum_probs=44.4
Q ss_pred CCeEEEEcccCChhHHHHHHHc-CCCceEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhh--h
Q psy5757 30 NSKVLEIGSGSGYLTNMISELM-NSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVEL--M 104 (139)
Q Consensus 30 ~~~iLdiG~G~G~~~~~l~~~~-~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~--~ 104 (139)
++.+|-.|+ +|..+..+++.+ ....+++..+.+++.++...+.+ .+++++..|+.+. +.++.. .
T Consensus 5 ~~~ilVtGa-sggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~----------~~~~~~~~D~~~~~~~~~~~~~~~ 73 (273)
T PRK07825 5 GKVVAITGG-ARGIGLATARALAALGARVAIGDLDEALAKETAAEL----------GLVVGGPLDVTDPASFAAFLDAVE 73 (273)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh----------ccceEEEccCCCHHHHHHHHHHHH
Confidence 467777665 455666666554 22347888888876655443332 2456677776651 111111 1
Q ss_pred ccCCceeEEecCcc
Q psy5757 105 MKFDRYDFLPHAPA 118 (139)
Q Consensus 105 ~~~~~~D~vi~~~~ 118 (139)
.....+|+++.+..
T Consensus 74 ~~~~~id~li~~ag 87 (273)
T PRK07825 74 ADLGPIDVLVNNAG 87 (273)
T ss_pred HHcCCCCEEEECCC
Confidence 12346899998865
No 498
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=65.54 E-value=33 Score=30.55 Aligned_cols=76 Identities=16% Similarity=0.120 Sum_probs=41.1
Q ss_pred CCeEEEEcccC-ChhHHHHHHHcCCCc-------------eEEEEeCCHHHHHHHHHHHHhhccccccCCcEEEEEccch
Q psy5757 30 NSKVLEIGSGS-GYLTNMISELMNSTG-------------QVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMI 95 (139)
Q Consensus 30 ~~~iLdiG~G~-G~~~~~l~~~~~~~~-------------~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~ 95 (139)
.++|+-+|||. |.......... +.. .|+..|.+++..+.+.+.. ++++.+..|+.
T Consensus 569 ~~rIlVLGAG~VG~~~a~~La~~-~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~----------~~~~~v~lDv~ 637 (1042)
T PLN02819 569 SQNVLILGAGRVCRPAAEYLASV-KTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGI----------ENAEAVQLDVS 637 (1042)
T ss_pred CCcEEEECCCHHHHHHHHHHHhC-cCccccccccccccccEEEEECCCHHHHHHHHHhc----------CCCceEEeecC
Confidence 45899999862 43333333222 222 3777888865555443332 35555666554
Q ss_pred hhhHHHhhhccCCceeEEecCccc
Q psy5757 96 KRIETVELMMKFDRYDFLPHAPAE 119 (139)
Q Consensus 96 ~~~~~~~~~~~~~~~D~vi~~~~~ 119 (139)
+ .+.+... ....|+|++..+.
T Consensus 638 D-~e~L~~~--v~~~DaVIsalP~ 658 (1042)
T PLN02819 638 D-SESLLKY--VSQVDVVISLLPA 658 (1042)
T ss_pred C-HHHHHHh--hcCCCEEEECCCc
Confidence 4 3433221 1238999887763
No 499
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=65.08 E-value=54 Score=24.25 Aligned_cols=82 Identities=13% Similarity=0.133 Sum_probs=43.3
Q ss_pred CCCeEEEEcccCChhHHHHHHHcCC-CceEEEEeCCHHHHHHHHHHHHh-hccccccCCcEEEEEccchhhhHHHhhhcc
Q psy5757 29 ENSKVLEIGSGSGYLTNMISELMNS-TGQVIGIEHVPQLVNSSIQNILH-SNARLLTDGHIKFVALGMIKRIETVELMMK 106 (139)
Q Consensus 29 ~~~~iLdiG~G~G~~~~~l~~~~~~-~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~i~~~~~d~~~~~~~~~~~~~ 106 (139)
.+++||-. .|+|..+..+++.+-. ..+|+++.-+....+........ +. ..+++++.+|+.+. ..+...
T Consensus 4 ~~~~vlVT-GatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~-----~~~~~~~~~Dl~~~-~~~~~~-- 74 (322)
T PLN02986 4 GGKLVCVT-GASGYIASWIVKLLLLRGYTVKATVRDLTDRKKTEHLLALDGA-----KERLKLFKADLLEE-SSFEQA-- 74 (322)
T ss_pred CCCEEEEE-CCCcHHHHHHHHHHHHCCCEEEEEECCCcchHHHHHHHhccCC-----CCceEEEecCCCCc-chHHHH--
Confidence 34566655 4688888888776522 23676654443322222222211 11 24688888997752 222111
Q ss_pred CCceeEEecCccc
Q psy5757 107 FDRYDFLPHAPAE 119 (139)
Q Consensus 107 ~~~~D~vi~~~~~ 119 (139)
.+.+|+|++....
T Consensus 75 ~~~~d~vih~A~~ 87 (322)
T PLN02986 75 IEGCDAVFHTASP 87 (322)
T ss_pred HhCCCEEEEeCCC
Confidence 2247888877753
No 500
>PRK12746 short chain dehydrogenase; Provisional
Probab=65.00 E-value=46 Score=23.46 Aligned_cols=82 Identities=15% Similarity=0.151 Sum_probs=42.7
Q ss_pred CCeEEEEcccCChhHHHHHHHcCCCc-eEEEE-eCCHHHHHHHHHHHHhhccccccCCcEEEEEccchhh--hHHHhhhc
Q psy5757 30 NSKVLEIGSGSGYLTNMISELMNSTG-QVIGI-EHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKR--IETVELMM 105 (139)
Q Consensus 30 ~~~iLdiG~G~G~~~~~l~~~~~~~~-~v~~~-d~~~~~~~~a~~~~~~~~~~~~~~~~i~~~~~d~~~~--~~~~~~~~ 105 (139)
+++++-.| |+|..+..+++.+-.++ +++.. .-+.+..+...+.+... ..+++++..|+.+. +.......
T Consensus 6 ~~~ilItG-asg~iG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~d~~~i~~~~~~~ 78 (254)
T PRK12746 6 GKVALVTG-ASRGIGRAIAMRLANDGALVAIHYGRNKQAADETIREIESN------GGKAFLIEADLNSIDGVKKLVEQL 78 (254)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc------CCcEEEEEcCcCCHHHHHHHHHHH
Confidence 46777666 57778888777663222 44443 34443333333222220 13577788887761 11111110
Q ss_pred --------cCCceeEEecCcc
Q psy5757 106 --------KFDRYDFLPHAPA 118 (139)
Q Consensus 106 --------~~~~~D~vi~~~~ 118 (139)
....+|+++++..
T Consensus 79 ~~~~~~~~~~~~id~vi~~ag 99 (254)
T PRK12746 79 KNELQIRVGTSEIDILVNNAG 99 (254)
T ss_pred HHHhccccCCCCccEEEECCC
Confidence 1135899998875
Done!