RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5757
(139 letters)
>gnl|CDD|216320 pfam01135, PCMT, Protein-L-isoaspartate(D-aspartate)
O-methyltransferase (PCMT).
Length = 210
Score = 58.5 bits (142), Expect = 2e-11
Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 10/63 (15%)
Query: 22 IIQPH----------LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSI 71
I PH L +VLEIGSGSGYLT + ++ G V+ IEH+P+LV +
Sbjct: 56 ISAPHMHAMMLELLELKPGMRVLEIGSGSGYLTACFARMVGEVGLVVSIEHIPELVEIAR 115
Query: 72 QNI 74
+N+
Sbjct: 116 RNL 118
>gnl|CDD|232816 TIGR00080, pimt, protein-L-isoaspartate(D-aspartate)
O-methyltransferase. This is an all-kingdom (but not
all species) full-length ortholog enzyme for repairing
aging proteins. Among the prokaryotes, the gene name is
pcm. Among eukaryotes, pimt [Protein fate, Protein
modification and repair].
Length = 215
Score = 52.5 bits (126), Expect = 3e-09
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 13 ISAILTYLSIIQ-PHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSI 71
ISA + + L KVLEIG+GSGY +++E++ G V+ IE +P+L +
Sbjct: 60 ISAPHMVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAE 119
Query: 72 QNI 74
+ +
Sbjct: 120 RRL 122
>gnl|CDD|184409 PRK13942, PRK13942, protein-L-isoaspartate O-methyltransferase;
Provisional.
Length = 212
Score = 51.9 bits (125), Expect = 5e-09
Identities = 19/49 (38%), Positives = 33/49 (67%)
Query: 27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNIL 75
L E KVLEIG+GSGY +++E++ +G+V+ IE +P+L + + +
Sbjct: 74 LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLK 122
>gnl|CDD|225316 COG2518, Pcm, Protein-L-isoaspartate carboxylmethyltransferase
[Posttranslational modification, protein turnover,
chaperones].
Length = 209
Score = 49.6 bits (119), Expect = 4e-08
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Query: 27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNI 74
L +VLEIG+GSGY +++ L G+V+ IE + +L + +N+
Sbjct: 70 LKPGDRVLEIGTGSGYQAAVLARL---VGRVVSIERIEELAEQARRNL 114
>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain. This
family appears to be have methyltransferase activity.
Length = 151
Score = 46.3 bits (110), Expect = 4e-07
Identities = 15/47 (31%), Positives = 29/47 (61%)
Query: 27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQN 73
L KVL++G G+GYLT +++E + +V+GI+ + + + +N
Sbjct: 1 LKSGIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKEN 47
>gnl|CDD|225317 COG2519, GCD14, tRNA(1-methyladenosine) methyltransferase and
related methyltransferases [Translation, ribosomal
structure and biogenesis].
Length = 256
Score = 39.2 bits (92), Expect = 2e-04
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Query: 13 ISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIE 61
I+ L I + S+VLE G+GSG LT ++ + G V E
Sbjct: 83 AGYIVARLGI-----SPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYE 126
>gnl|CDD|140001 PRK13944, PRK13944, protein-L-isoaspartate O-methyltransferase;
Provisional.
Length = 205
Score = 38.3 bits (89), Expect = 5e-04
Identities = 17/45 (37%), Positives = 27/45 (60%)
Query: 32 KVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH 76
K+LE+G+GSGY + +E + G+V +E V +L + QNI
Sbjct: 75 KILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIER 119
>gnl|CDD|237568 PRK13943, PRK13943, protein-L-isoaspartate O-methyltransferase;
Provisional.
Length = 322
Score = 37.9 bits (88), Expect = 7e-04
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 26 HLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDG 85
L++ +VLEIG G+GY ++S ++ G V+ +E+ + I I N R L
Sbjct: 77 GLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEY-----SRKICEIAKRNVRRLGIE 131
Query: 86 HIKFV 90
++ FV
Sbjct: 132 NVIFV 136
>gnl|CDD|178974 PRK00312, pcm, protein-L-isoaspartate O-methyltransferase;
Reviewed.
Length = 212
Score = 37.5 bits (88), Expect = 8e-04
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 13 ISAILTYLSIIQP-HLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSI 71
IS + + L +VLEIG+GSGY +++ L+ +V +E + L +
Sbjct: 61 ISQPYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAK 117
Query: 72 QN 73
+
Sbjct: 118 RR 119
>gnl|CDD|173391 PTZ00098, PTZ00098, phosphoethanolamine N-methyltransferase;
Provisional.
Length = 263
Score = 37.3 bits (86), Expect = 0.001
Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 11/87 (12%)
Query: 11 GGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSS 70
GGI A LS I+ LNENSKVL+IGSG G I+E + V G++ ++VN
Sbjct: 36 GGIEATTKILSDIE--LNENSKVLDIGSGLGGGCKYINEKYGA--HVHGVDICEKMVNI- 90
Query: 71 IQNILHSNARLLTDGHIKFVALGMIKR 97
+ R I+F A ++K+
Sbjct: 91 ------AKLRNSDKNKIEFEANDILKK 111
>gnl|CDD|201699 pfam01269, Fibrillarin, Fibrillarin.
Length = 229
Score = 36.8 bits (86), Expect = 0.002
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 14/71 (19%)
Query: 5 KIGAAI-GGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHV 63
K+ AAI G+ I + SKVL +G+ SG + +S+++ G V +E
Sbjct: 57 KLAAAILKGLDNI---------PIKPGSKVLYLGAASGTTVSHVSDIVGPEGVVYAVEFS 107
Query: 64 P----QLVNSS 70
P +L+N +
Sbjct: 108 PRVGRELINMA 118
>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain. Protein in
this family function as methyltransferases.
Length = 104
Score = 35.4 bits (82), Expect = 0.002
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 9/80 (11%)
Query: 29 ENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIK 88
++VL+IG G+G L ++ L +V G++ P+++ + NA+L I
Sbjct: 1 PGARVLDIGCGTGSLAIELARLFP-GARVTGVDLSPEML-----ELARENAKLALGPRIT 54
Query: 89 FVALGMIKRIETVELMMKFD 108
FV G + ++L+ FD
Sbjct: 55 FVQ-GDAP--DALDLLEGFD 71
>gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional.
Length = 241
Score = 36.5 bits (85), Expect = 0.002
Identities = 11/61 (18%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Query: 26 HLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNI--LHSNARLLT 83
+ +VL++G G G ++ + G+V+GI+ ++ + + L N +
Sbjct: 16 AVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVR 75
Query: 84 D 84
Sbjct: 76 G 76
>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional.
Length = 293
Score = 33.9 bits (78), Expect = 0.014
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 10/58 (17%)
Query: 5 KIGAAI-GGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIE 61
K+ AAI GG++ I + SKVL +G+ SG + +S+L+ G V +E
Sbjct: 116 KLAAAIIGGVANI---------PIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVE 164
>gnl|CDD|234492 TIGR04188, methyltr_grsp, methyltransferase, ATP-grasp peptide
maturase system. Members of this protein family are
predicted SAM-dependent methyltransferases that
regularly occur in the context of a putative peptide
modification ATP-grasp enzyme (TIGR04187, related to
enzymes of microviridin maturation) and a putative
ribosomal peptide modification target (TIGR04186).
Length = 363
Score = 33.5 bits (77), Expect = 0.026
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 32 KVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLV 67
+VLEIG+G+GY ++ + V +E P L
Sbjct: 110 RVLEIGTGTGYSAALLCHRLGD-DNVTSVEVDPGLA 144
>gnl|CDD|223574 COG0500, SmtA, SAM-dependent methyltransferases [Secondary
metabolites biosynthesis, transport, and catabolism /
General function prediction only].
Length = 257
Score = 32.6 bits (71), Expect = 0.042
Identities = 19/84 (22%), Positives = 33/84 (39%), Gaps = 6/84 (7%)
Query: 25 PHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTD 84
L VL+IG G+G L + L V+G++ P+++ + + A
Sbjct: 44 RLLPGGLGVLDIGCGTGRLALLA-RLGGRGAYVVGVDLSPEML-----ALARARAEGAGL 97
Query: 85 GHIKFVALGMIKRIETVELMMKFD 108
G + FV + + E FD
Sbjct: 98 GLVDFVVADALGGVLPFEDSASFD 121
>gnl|CDD|233708 TIGR02072, BioC, biotin biosynthesis protein BioC. This enzyme,
which is found in biotin biosynthetic gene clusters in
proteobacteria, firmicutes, green-sulfur bacteria,
fusobacterium and bacteroides, is believed to carry out
an enzymatic step prior to the formation of
pimeloyl-CoA (although attribution of this annotation
is not traceable). The enzyme appears related to
methyltransferases by homology [Biosynthesis of
cofactors, prosthetic groups, and carriers, Biotin].
Length = 240
Score = 32.3 bits (74), Expect = 0.046
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 29 ENSKVLEIGSGSGYLTNMISE 49
+ VL+IG G+GYLT + +
Sbjct: 34 IPASVLDIGCGTGYLTRALLK 54
>gnl|CDD|177970 PLN02336, PLN02336, phosphoethanolamine N-methyltransferase.
Length = 475
Score = 32.4 bits (74), Expect = 0.049
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 8/65 (12%)
Query: 20 LSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLV--NSSIQNILHS 77
LS++ P+ E VLE+G+G G T EL GQVI ++ + ++ N SI N +
Sbjct: 30 LSLLPPY--EGKSVLELGAGIGRFT---GELAKKAGQVIALDFIESVIKKNESI-NGHYK 83
Query: 78 NARLL 82
N + +
Sbjct: 84 NVKFM 88
>gnl|CDD|222171 pfam13489, Methyltransf_23, Methyltransferase domain. This
family appears to be a methyltransferase domain.
Length = 154
Score = 32.1 bits (73), Expect = 0.049
Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 7/67 (10%)
Query: 25 PHLNENSKVLEIGSGSGYLTNMISELMNSTG-QVIGIEHVPQLVNSSIQNILHSNARLLT 83
P L +VL+IG G+G L ++ E G V G++ P I ++ + +
Sbjct: 18 PRLKPGGRVLDIGCGTGILLRLLRER----GFDVTGVD--PSPAAVLIFSLFDAPDPAVL 71
Query: 84 DGHIKFV 90
G +
Sbjct: 72 AGKYDLI 78
>gnl|CDD|222236 pfam13578, Methyltransf_24, Methyltransferase domain. This
family appears to be a methyltransferase domain.
Length = 105
Score = 31.5 bits (72), Expect = 0.053
Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Query: 34 LEIGSGSGYLTNMISELM--NSTGQVIGIEHVPQLVNSSI--QNILHSNARLL 82
+EIG SG T +++ + N G++ I+ P + + L RLL
Sbjct: 1 VEIGVYSGVSTLWLAQALKDNGLGRLYSIDPWPGAEAGANLRKAGLADRVRLL 53
>gnl|CDD|188051 TIGR00446, nop2p, NOL1/NOP2/sun family putative RNA methylase.
[Protein synthesis, tRNA and rRNA base modification].
Length = 264
Score = 32.4 bits (74), Expect = 0.055
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
Query: 21 SIIQP---HLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHS 77
S+I P E+ +VL++ + G T IS+LM + G ++ E ++ S L S
Sbjct: 60 SMIPPIALEPREDERVLDMAAAPGGKTTQISQLMKNKGCIVANE-----ISKSRTKALIS 114
Query: 78 N 78
N
Sbjct: 115 N 115
>gnl|CDD|128898 smart00650, rADc, Ribosomal RNA adenine dimethylases.
Length = 169
Score = 31.7 bits (73), Expect = 0.062
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 26 HLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIE 61
+L VLEIG G G LT EL+ +V IE
Sbjct: 10 NLRPGDTVLEIGPGKGALTE---ELLERAKRVTAIE 42
>gnl|CDD|234563 TIGR04364, methyltran_FxLD, methyltransferase, FxLD system.
Members of this family resemble occur regularly in the
vicinity of lantibiotic biosynthesis enzymes and their
probable target, the FxLD family of putative ribosomal
natural product precursor (TIGR04363). Members resemble
protein-L-isoaspartate O-methyltransferase (TIGR00080)
and a predicted methyltranserase, TIGR04188, of another
putative peptide modification system.
Length = 394
Score = 32.0 bits (73), Expect = 0.088
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 12/61 (19%)
Query: 7 GAAIGGISAILTYLSIIQPHLNENS------KVLEIGSGSGYLTNMISELMNSTGQVIGI 60
GAA+ +SA IQ + E + +VLEIGSG GY +++EL+ +G+V +
Sbjct: 59 GAALSSVSA-----PHIQAMMLEQAGVEPGMRVLEIGSG-GYNAALLAELVGPSGEVTTV 112
Query: 61 E 61
+
Sbjct: 113 D 113
>gnl|CDD|215900 pfam00398, RrnaAD, Ribosomal RNA adenine dimethylase.
Length = 254
Score = 31.5 bits (72), Expect = 0.099
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 10/65 (15%)
Query: 26 HLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDG 85
+L E+ VLEIG G G LT +EL QV+ IE P+L +L
Sbjct: 26 NLQESDTVLEIGPGKGALT---TELAKRAKQVVAIEIDPRLAK-------RLQEKLALHP 75
Query: 86 HIKFV 90
+++ V
Sbjct: 76 NVEVV 80
>gnl|CDD|233115 TIGR00755, ksgA, dimethyladenosine transferase. In both E. coli
and Saccharomyces cerevisiae, this protein is
responsible for the dimethylation of two adjacent
adenosine residues in a conserved hairpin of 16S rRNA
in bacteria, 18S rRNA in eukaryotes. This adjacent
dimethylation is the only rRNA modification shared by
bacteria and eukaryotes. A single member of this family
is present in each of the first 20 completed microbial
genomes. This protein is essential in yeast, but not in
E. coli, where its deletion leads to resistance to the
antibiotic kasugamycin. Alternate name:
S-adenosylmethionine--6-N',N'-adenosyl (rRNA)
dimethyltransferase [Protein synthesis, tRNA and rRNA
base modification].
Length = 253
Score = 31.1 bits (71), Expect = 0.15
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 8/49 (16%)
Query: 13 ISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIE 61
I I+ ++ E VLEIG G G LT + + +V IE
Sbjct: 18 IQKIVEAANV-----LEGDVVLEIGPGLGALTEPLLKR---AKKVTAIE 58
>gnl|CDD|234740 PRK00377, cbiT, cobalt-precorrin-6Y C(15)-methyltransferase;
Provisional.
Length = 198
Score = 30.9 bits (70), Expect = 0.15
Identities = 14/47 (29%), Positives = 27/47 (57%)
Query: 27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQN 73
L + +L+IG G+G +T S L+ TG+V ++ + +N + +N
Sbjct: 38 LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRN 84
>gnl|CDD|237852 PRK14896, ksgA, 16S ribosomal RNA methyltransferase KsgA/Dim1
family protein; Provisional.
Length = 258
Score = 31.0 bits (71), Expect = 0.15
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Query: 27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIE 61
+ VLEIG G G LT+ EL +V IE
Sbjct: 27 DTDGDPVLEIGPGKGALTD---ELAKRAKKVYAIE 58
>gnl|CDD|237898 PRK15068, PRK15068, tRNA mo(5)U34 methyltransferase; Provisional.
Length = 322
Score = 30.6 bits (70), Expect = 0.20
Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 26/96 (27%)
Query: 22 IIQPHLN--ENSKVLEIGSGSGY-LTNMISELMNSTG--QVIGIEHVP-QLVN---SSIQ 72
+ PHL+ + VL++G G+GY + M+ G V+GI+ P QL +++
Sbjct: 113 RVLPHLSPLKGRTVLDVGCGNGYHMWRMLGA-----GAKLVVGID--PSQLFLCQFEAVR 165
Query: 73 NILHSNARLLTDGHIKFVALGMIKRIETVELMMKFD 108
+L ++ R + LG IE + + FD
Sbjct: 166 KLLGNDQR------AHLLPLG----IEQLPALKAFD 191
>gnl|CDD|223109 COG0030, KsgA, Dimethyladenosine transferase (rRNA methylation)
[Translation, ribosomal structure and biogenesis].
Length = 259
Score = 30.3 bits (69), Expect = 0.25
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 26 HLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIE 61
+++ VLEIG G G LT L+ +V IE
Sbjct: 27 NISPGDNVLEIGPGLGALT---EPLLERAARVTAIE 59
>gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain. This
family contains methyltransferase domains.
Length = 117
Score = 29.7 bits (67), Expect = 0.27
Identities = 9/30 (30%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 32 KVLEIGSGSGYLTNMISELMNSTGQVIGIE 61
+VL+ G+GSG + +V+G+E
Sbjct: 3 RVLDPGAGSGAFLLAAARAGPD-ARVVGVE 31
>gnl|CDD|222313 pfam13679, Methyltransf_32, Methyltransferase domain. This family
appears to be a methyltransferase domain.
Length = 143
Score = 29.9 bits (68), Expect = 0.29
Identities = 17/94 (18%), Positives = 35/94 (37%), Gaps = 13/94 (13%)
Query: 19 YLSIIQPHLNENSK------VLEIGSGSGYLTN-MISELMNST--GQVIGIEHVPQLVNS 69
++P + E V++ G+G GYL + L +V+GI+ +LV
Sbjct: 9 LAEFVEPLIKEVLDKTGCITVVDHGAGKGYLGFILYYLLFKRKYGVRVVGIDARAELVEK 68
Query: 70 SIQNILHSNARLLTDGHIKFVALGMIKRIETVEL 103
+ +L + + F+ + + L
Sbjct: 69 A-NAR---AQKLGFNKRMSFLEGTIAGATVSARL 98
>gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain. This
family appears to be a methyltransferase domain.
Length = 97
Score = 28.8 bits (65), Expect = 0.36
Identities = 7/29 (24%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 33 VLEIGSGSGYLTNMISELMNSTGQVIGIE 61
+L++G G+G + ++ S V G++
Sbjct: 1 ILDLGCGTGRVLRALARAGPS--SVTGVD 27
>gnl|CDD|217012 pfam02390, Methyltransf_4, Putative methyltransferase. This is a
family of putative methyltransferases. The aligned
region contains the GXGXG S-AdoMet binding site
suggesting a putative methyltransferase activity.
Length = 198
Score = 29.6 bits (67), Expect = 0.39
Identities = 22/82 (26%), Positives = 31/82 (37%), Gaps = 15/82 (18%)
Query: 28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIE-HVP---QLVNSSIQ-------NILH 76
NE LEIG G G +++ N IGIE VP + + I IL
Sbjct: 19 NEQPLFLEIGCGMGDFLVAMAK-KNPDKLFIGIEIRVPGVDKALKKIIALRGLQNLRILC 77
Query: 77 SNARLLTDGHIKFVALGMIKRI 98
+A L G +++I
Sbjct: 78 GDAMKLLP---NLFPDGSLQKI 96
>gnl|CDD|234649 PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed.
Length = 202
Score = 29.4 bits (67), Expect = 0.48
Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 14/69 (20%)
Query: 28 NENSKVLEIGSGSG-YLTNMISELMNSTGQVIGIE-HVP-------QLVNSSIQN--ILH 76
N+ LEIG G G +L M N IGIE H P ++ + N +L
Sbjct: 39 NDAPIHLEIGFGKGEFLVEMA--KANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLC 96
Query: 77 SNA-RLLTD 84
+A +L D
Sbjct: 97 GDAVEVLLD 105
>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent
methyltransferases (SAM or AdoMet-MTase), class I;
AdoMet-MTases are enzymes that use
S-adenosyl-L-methionine (SAM or AdoMet) as a substrate
for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy). There are at least
five structurally distinct families of AdoMet-MTases,
class I being the largest and most diverse. Within this
class enzymes can be classified by different substrate
specificities (small molecules, lipids, nucleic acids,
etc.) and different target atoms for methylation
(nitrogen, oxygen, carbon, sulfur, etc.).
Length = 107
Score = 28.5 bits (64), Expect = 0.48
Identities = 8/30 (26%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 32 KVLEIGSGSGYLTNMISELMNSTGQVIGIE 61
+VL++G G+G L ++ +V G++
Sbjct: 1 RVLDLGCGTGALALALASGPG--ARVTGVD 28
>gnl|CDD|223298 COG0220, COG0220, Predicted S-adenosylmethionine-dependent
methyltransferase [General function prediction only].
Length = 227
Score = 29.2 bits (66), Expect = 0.58
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 13/68 (19%)
Query: 28 NENSKVLEIGSGSG-YLTNMISELMNSTGQVIGIE-HVP-------QLVNSSIQN--ILH 76
N VLEIG G G +L M N +GIE VP ++ ++N +L
Sbjct: 47 NNAPIVLEIGFGMGEFLVEM--AKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLC 104
Query: 77 SNARLLTD 84
+A + D
Sbjct: 105 GDAVEVLD 112
>gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone
biosynthesis [Coenzyme metabolism].
Length = 238
Score = 29.2 bits (66), Expect = 0.65
Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 15/70 (21%)
Query: 22 IIQPHLNENSKVLEIGSGSGYLTNMISELMNS--TGQVIGIEHVPQ--------LVNSSI 71
I + KVL++ G+G +M L S TG+V+G++ L +
Sbjct: 44 ISLLGIKPGDKVLDVACGTG---DMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGV 100
Query: 72 QNI--LHSNA 79
QN+ + +A
Sbjct: 101 QNVEFVVGDA 110
>gnl|CDD|226472 COG3963, COG3963, Phospholipid N-methyltransferase [Lipid
metabolism].
Length = 194
Score = 28.9 bits (65), Expect = 0.71
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 7/65 (10%)
Query: 9 AIGGI---SAILT--YLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHV 63
+G I S+IL S+I P VLE+G G+G +T I + IE+
Sbjct: 25 TVGAILPSSSILARKMASVIDPESGLP--VLELGPGTGVITKAILSRGVRPESLTAIEYS 82
Query: 64 PQLVN 68
P V
Sbjct: 83 PDFVC 87
>gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain. Members of
this family are SAM dependent methyltransferases.
Length = 98
Score = 28.1 bits (63), Expect = 0.74
Identities = 8/28 (28%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 34 LEIGSGSGYLTNMISELMNSTGQVIGIE 61
L+IG G+G L + E + G++
Sbjct: 1 LDIGCGTGTLLRALLEA-LPGLEYTGVD 27
>gnl|CDD|225151 COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme metabolism].
Length = 187
Score = 28.7 bits (65), Expect = 0.75
Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQN 73
++ +IG+G+G +T + S G+VI IE + + +N
Sbjct: 32 PRPGDRLWDIGAGTGSITIEWALAGPS-GRVIAIERDEEALELIERN 77
>gnl|CDD|237872 PRK14968, PRK14968, putative methyltransferase; Provisional.
Length = 188
Score = 28.7 bits (65), Expect = 0.84
Identities = 7/15 (46%), Positives = 12/15 (80%)
Query: 29 ENSKVLEIGSGSGYL 43
+ +VLE+G+GSG +
Sbjct: 23 KGDRVLEVGTGSGIV 37
>gnl|CDD|233880 TIGR02469, CbiT, precorrin-6Y C5,15-methyltransferase
(decarboxylating), CbiT subunit. This model recognizes
the CbiT methylase which is responsible, in part (along
with CbiE), for methylating precorrin-6y (or
cobalt-precorrin-6y) at both the 5 and 15 positions as
well as the concomitant decarbozylation at C-12. In
many organisms, this protein is fused to the CbiE
subunit. The fused protein, when found in organisms
catalyzing the oxidative version of the cobalamin
biosynthesis pathway, is called CobL [Biosynthesis of
cofactors, prosthetic groups, and carriers, Heme,
porphyrin, and cobalamin].
Length = 124
Score = 28.1 bits (63), Expect = 0.87
Identities = 16/66 (24%), Positives = 35/66 (53%), Gaps = 6/66 (9%)
Query: 20 LSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQ---LVNSSIQNILH 76
LS ++ + + +IG+G+G +T + L+ + G+V IE P+ L+ +++
Sbjct: 12 LSKLRLRPGD--VLWDIGAGTGSVTIEAARLVPN-GRVYAIERNPEALDLIERNLRRFGV 68
Query: 77 SNARLL 82
SN ++
Sbjct: 69 SNIVIV 74
>gnl|CDD|241257 cd01223, PH_Vav, Vav pleckstrin homology (PH) domain. Vav acts as
a guanosine nucleotide exchange factor (GEF) for Rho/Rac
proteins. They control processes including T cell
activation, phagocytosis, and migration of cells. The
Vav subgroup of Dbl GEFs consists of three family
members (Vav1, Vav2, and Vav3) in mammals. Vav1 is
preferentially expressed in the hematopoietic system,
while Vav2 and Vav3 are described by broader expression
patterns. Mammalian Vav proteins consist of a calponin
homology (CH) domain, an acidic region, a catalytic Dbl
homology (DH) domain, a PH domain, a zinc finger
cysteine rich domain (C1/CRD), and an SH2 domain,
flanked by two SH3 domains. In invertebrates such as
Drosophila and C. elegans, Vav is missing the N-terminal
SH3 domain. The DH domain is involved in RhoGTPase
recognition and selectivity and stimulates the
reorganization of the switch regions for GDP/GTP
exchange. The PH domain is implicated in directing
membrane localization, allosteric regulation of guanine
nucleotide exchange activity, and as a phospholipid-
dependent regulator of GEF activity. Vavs bind
RhoGTPases including Rac1, RhoA, RhoG, and Cdc42, while
other members of the GEF family are specific for a
single RhoGTPase. This promiscuity is thought to be a
result of its CRD. PH domains have diverse functions,
but in general are involved in targeting proteins to the
appropriate cellular location or in the interaction with
a binding partner. They share little sequence
conservation, but all have a common fold, which is
electrostatically polarized. Less than 10% of PH domains
bind phosphoinositide phosphates (PIPs) with high
affinity and specificity. PH domains are distinguished
from other PIP-binding domains by their specific
high-affinity binding to PIPs with two vicinal phosphate
groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3
which results in targeting some PH domain proteins to
the plasma membrane. A few display strong specificity in
lipid binding. Any specificity is usually determined by
loop regions or insertions in the N-terminus of the
domain, which are not conserved across all PH domains.
PH domains are found in cellular signaling proteins such
as serine/threonine kinase, tyrosine kinases, regulators
of G-proteins, endocytotic GTPases, adaptors, as well as
cytoskeletal associated molecules and in lipid
associated enzymes.polarized. PH domains also have
diverse functions. They are often involved in targeting
proteins to the plasma membrane, but only a few (less
than 10%) display strong specificity in binding inositol
phosphates. Any specificity is usually determined by
loop regions or insertions in the N-terminus of the
domain, which are not conserved across all PH domains.
PH domains are found in cellular signaling proteins such
as serine/threonine kinases, tyrosine kinases,
regulators of G-proteins, endocytotic GTPases, adaptors,
cytoskeletal associated molecules, and in lipid
associated enzymes.
Length = 127
Score = 28.0 bits (63), Expect = 0.91
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 9/49 (18%)
Query: 65 QLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKFDRYDFL 113
Q + ++ L RL DG +K I++ E K DRY FL
Sbjct: 3 QDLIENLNVSLADYGRLKIDGELK---------IKSHEDQKKKDRYAFL 42
>gnl|CDD|234708 PRK00274, ksgA, 16S ribosomal RNA methyltransferase KsgA/Dim1
family protein; Reviewed.
Length = 272
Score = 28.5 bits (65), Expect = 0.97
Identities = 12/36 (33%), Positives = 15/36 (41%), Gaps = 3/36 (8%)
Query: 26 HLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIE 61
VLEIG G G LT L+ +V +E
Sbjct: 39 GPQPGDNVLEIGPGLGALTE---PLLERAAKVTAVE 71
>gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain. Members of
this family are SAM dependent methyltransferases.
Length = 92
Score = 27.2 bits (61), Expect = 1.2
Identities = 7/28 (25%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 34 LEIGSGSGYLTNMISELMNSTGQVIGIE 61
L++G G+G L ++ +V G++
Sbjct: 1 LDVGCGTGLLAEALARRGG--ARVTGVD 26
>gnl|CDD|225100 COG2189, COG2189, Adenine specific DNA methylase Mod [DNA
replication, recombination, and repair].
Length = 590
Score = 28.6 bits (64), Expect = 1.3
Identities = 18/91 (19%), Positives = 42/91 (46%), Gaps = 11/91 (12%)
Query: 28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIE---HVPQLVNSSIQNIL----HSNAR 80
N+N VL+ +GSG T + +L + IGIE ++ ++ ++ ++ ++
Sbjct: 452 NKNDLVLDFFAGSGTTTAVAHKL---NRKYIGIEQMEYIENIILERLKKVIDGEQGGISK 508
Query: 81 LLT-DGHIKFVALGMIKRIETVELMMKFDRY 110
G + FV +++ E + ++ +Y
Sbjct: 509 DFDWKGGLSFVYAELLEENEELIQLILLSKY 539
>gnl|CDD|177877 PLN02233, PLN02233, ubiquinone biosynthesis methyltransferase.
Length = 261
Score = 28.3 bits (63), Expect = 1.3
Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 33 VLEIGSGSGYLTNMISELMNSTGQVIGIEH-VPQLVNSSIQNILHSNA 79
VL++ GSG L ++SE + S G+V+G++ QL ++ + L + +
Sbjct: 77 VLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKS 124
>gnl|CDD|219269 pfam07021, MetW, Methionine biosynthesis protein MetW. This
family consists of several bacterial and one archaeal
methionine biosynthesis MetW proteins. Biosynthesis of
methionine from homoserine in Pseudomonas putida takes
place in three steps. The first step is the acylation
of homoserine to yield an acyl-L-homoserine. This
reaction is catalyzed by the products of the metXW
genes and is equivalent to the first step in
enterobacteria, gram-positive bacteria and fungi,
except that in these microorganisms the reaction is
catalyzed by a single polypeptide (the product of the
metA gene in Escherichia coli and the met5 gene product
in Neurospora crassa). In Pseudomonas putida, as in
gram-positive bacteria and certain fungi, the second
and third steps are a direct sulfhydrylation that
converts the O-acyl-L-homoserine into homocysteine and
further methylation to yield methionine. The latter
reaction can be mediated by either of the two
methionine synthetases present in the cells.
Length = 193
Score = 27.8 bits (62), Expect = 1.5
Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
Query: 20 LSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH 76
I + S+VL++G G G L ++ E G+ GIE V + L
Sbjct: 4 FRYIARLIPPGSRVLDLGCGDGSLLYLLQEEKQVDGR--GIELDAAGVAECVAKGLS 58
>gnl|CDD|226607 COG4122, COG4122, Predicted O-methyltransferase [General function
prediction only].
Length = 219
Score = 27.7 bits (62), Expect = 2.0
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 32 KVLEIGSGSGYLTNMISELMNSTGQVIGIEH 62
++LEIG+ GY ++ + G++ IE
Sbjct: 62 RILEIGTAIGYSALWMALALPDDGRLTTIER 92
>gnl|CDD|240367 PTZ00338, PTZ00338, dimethyladenosine transferase-like protein;
Provisional.
Length = 294
Score = 27.7 bits (62), Expect = 2.2
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 33 VLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVN 68
VLEIG G+G LT +L+ +VI IE P++V
Sbjct: 40 VLEIGPGTGNLT---EKLLQLAKKVIAIEIDPRMVA 72
>gnl|CDD|225173 COG2264, PrmA, Ribosomal protein L11 methylase [Translation,
ribosomal structure and biogenesis].
Length = 300
Score = 27.6 bits (62), Expect = 2.3
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 18 TYLSI--IQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNIL 75
T L + ++ L + VL++G GSG L I+ +V+G++ PQ V ++ +N
Sbjct: 149 TSLCLEALEKLLKKGKTVLDVGCGSGIL--AIAAAKLGAKKVVGVDIDPQAVEAARENAR 206
>gnl|CDD|237007 PRK11873, arsM, arsenite S-adenosylmethyltransferase; Reviewed.
Length = 272
Score = 27.2 bits (61), Expect = 2.5
Identities = 13/41 (31%), Positives = 25/41 (60%)
Query: 27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLV 67
L VL++GSG G+ + + + TG+VIG++ P+++
Sbjct: 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEML 115
>gnl|CDD|144813 pfam01358, PARP_regulatory, Poly A polymerase regulatory subunit.
Length = 295
Score = 26.7 bits (59), Expect = 4.6
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 17 LTYLSIIQPH--LNENSKVLEIGSGSGYLTNMISELMNSTGQVI 58
L +L+ + H L+ V+ IGS GY + + + G +I
Sbjct: 44 LFFLNKLIRHNILDGIITVVYIGSAPGYHIRYLRDHFSDLGVII 87
>gnl|CDD|149213 pfam08003, Methyltransf_9, Protein of unknown function (DUF1698).
This family contains many hypothetical proteins. It also
includes two putative methyltransferase proteins.
Length = 315
Score = 26.6 bits (59), Expect = 5.1
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 6/40 (15%)
Query: 25 PHLN--ENSKVLEIGSGSGY-LTNMISELMNSTGQVIGIE 61
PHL+ + +L++G G+GY + M+ E V+GI+
Sbjct: 109 PHLSPLKGRTILDVGCGNGYHMWRMLGE---GAALVVGID 145
>gnl|CDD|234637 PRK00107, gidB, 16S rRNA methyltransferase GidB; Reviewed.
Length = 187
Score = 25.9 bits (58), Expect = 7.8
Identities = 9/19 (47%), Positives = 14/19 (73%)
Query: 23 IQPHLNENSKVLEIGSGSG 41
I P+L +VL++GSG+G
Sbjct: 39 IAPYLPGGERVLDVGSGAG 57
>gnl|CDD|161703 TIGR00091, TIGR00091, tRNA (guanine-N(7)-)-methyltransferase.
This predicted S-adenosylmethionine-dependent
methyltransferase is found in a single copy in most
Bacteria. It is also found, with a short amino-terminal
extension in eukaryotes. Its function is unknown. In E.
coli, this protein flanks the DNA repair protein MutY,
also called micA [Protein synthesis, tRNA and rRNA base
modification].
Length = 194
Score = 25.8 bits (57), Expect = 8.2
Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 16/82 (19%)
Query: 28 NENSKVLEIGSGSG-YLTNMISELMNSTGQVIGIEHVPQLVNSSIQ----------NILH 76
N+ LEIG G G +L +M + N +GIE +V ++ ++L
Sbjct: 15 NKAPLHLEIGCGKGRFLIDMAKQ--NPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLC 72
Query: 77 SNARLLTDGHIKFVALGMIKRI 98
+A L D KF G + ++
Sbjct: 73 GDANELLD---KFFPDGSLSKV 91
>gnl|CDD|168661 PRK06753, PRK06753, hypothetical protein; Provisional.
Length = 373
Score = 25.8 bits (57), Expect = 8.6
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 5/91 (5%)
Query: 1 MNLVKIGAAIGGISAILTYLSI-IQPHLNE-NSKVLEIGSGSGYLTNMISELMNSTGQVI 58
M + IGA IGG++A + + E N V E+G+G G N+I +L N
Sbjct: 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNH-DLAK 59
Query: 59 GIEHVPQLVNSSIQNILHSNARLLTDGHIKF 89
GI++ Q S N+L LL +K
Sbjct: 60 GIKNAGQ--ILSTMNLLDDKGTLLNKVKLKS 88
>gnl|CDD|110227 pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransferase family.
Length = 233
Score = 25.5 bits (56), Expect = 9.4
Identities = 10/33 (30%), Positives = 21/33 (63%)
Query: 29 ENSKVLEIGSGSGYLTNMISELMNSTGQVIGIE 61
+K L++ G+G T +S+ S+G+V+G++
Sbjct: 47 RGNKFLDVAGGTGDWTFGLSDSAGSSGKVVGLD 79
>gnl|CDD|225139 COG2230, Cfa, Cyclopropane fatty acid synthase and related
methyltransferases [Cell envelope biogenesis, outer
membrane].
Length = 283
Score = 25.7 bits (57), Expect = 9.9
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 26 HLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGI 60
L +L+IG G G L +E T V+G+
Sbjct: 69 GLKPGMTLLDIGCGWGGLAIYAAEEYGVT--VVGV 101
>gnl|CDD|218990 pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA).
This family consists of several Ribosomal protein L11
methyltransferase (EC:2.1.1.-) sequences.
Length = 294
Score = 25.7 bits (57), Expect = 10.0
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 32 KVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNIL--HSNARL 81
VL++G GSG L I+ L +V+G++ P V ++ +N A+L
Sbjct: 163 TVLDVGCGSGILA--IAALKLGAKKVVGVDIDPVAVRAAKENAELNGVEAQL 212
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.136 0.391
Gapped
Lambda K H
0.267 0.0829 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,030,891
Number of extensions: 620047
Number of successful extensions: 689
Number of sequences better than 10.0: 1
Number of HSP's gapped: 687
Number of HSP's successfully gapped: 82
Length of query: 139
Length of database: 10,937,602
Length adjustment: 87
Effective length of query: 52
Effective length of database: 7,078,804
Effective search space: 368097808
Effective search space used: 368097808
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.4 bits)