RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5757
(139 letters)
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl
homocysteine, protein repair; HET: SAH; 1.50A {Homo
sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*
Length = 226
Score = 80.7 bits (200), Expect = 7e-20
Identities = 27/71 (38%), Positives = 47/71 (66%)
Query: 20 LSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNA 79
L ++ L+E +K L++GSGSG LT + ++ TG+VIGI+H+ +LV+ S+ N+ +
Sbjct: 68 LELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDP 127
Query: 80 RLLTDGHIKFV 90
LL+ G ++ V
Sbjct: 128 TLLSSGRVQLV 138
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans;
methyltransferase, isomerization, protein repair,
S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila
melanogaster} SCOP: c.66.1.7
Length = 227
Score = 74.6 bits (184), Expect = 2e-17
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Query: 20 LSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTG-----QVIGIEHVPQLVNSSIQNI 74
L ++ HL +++L++GSGSGYLT + + G +++GIEH +LV S N+
Sbjct: 75 LEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANL 134
Query: 75 LHSNARLLTDGHIKFV 90
+ +L G + V
Sbjct: 135 NTDDRSMLDSGQLLIV 150
>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A
methyltransferase; protein repair, isoaspartyl
formation, P. falciparum; HET: SAH; 2.00A {Plasmodium
falciparum}
Length = 227
Score = 73.0 bits (180), Expect = 6e-17
Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 20 LSIIQPHLNENSKVLEIGSGSGYLT----NMISELMNSTGQVIGIEHVPQLVNSSIQNIL 75
L + L S+ +++GSGSGYLT ++ L N VIG+E V LVN S++NI
Sbjct: 71 LKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIK 130
Query: 76 HSNARLLTDGHIKFV 90
LL + K +
Sbjct: 131 RDKPELLKIDNFKII 145
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold,
alpha/beta/alpha sandwich structure, STRU genomics,
NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Length = 215
Score = 63.7 bits (156), Expect = 1e-13
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 10/63 (15%)
Query: 22 IIQPH----------LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSI 71
I H L KVLEIG+G GY + +E++ G V+ IE +P+L +
Sbjct: 60 ISAIHMVGMMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAE 119
Query: 72 QNI 74
+ +
Sbjct: 120 RTL 122
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann
methyltransferase, protein repair isomerization; HET:
SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB:
1jg2_A* 1jg3_A* 1jg4_A*
Length = 235
Score = 62.3 bits (152), Expect = 6e-13
Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Query: 26 HLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNI 74
+L +LE+G+GSG+ +ISE++ V IE +P+LV + +N+
Sbjct: 88 NLKPGMNILEVGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRNL 134
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues,
protein repair, deamidation, post-translational
modification; HET: SAH; 1.80A {Thermotoga maritima}
SCOP: c.66.1.7 d.197.1.1
Length = 317
Score = 63.2 bits (154), Expect = 6e-13
Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 10/64 (15%)
Query: 21 SIIQPH----------LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSS 70
+ QP L++ +VLEIG G+GY ++S ++ G V+ +E+ ++ +
Sbjct: 57 TSSQPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIA 116
Query: 71 IQNI 74
+N+
Sbjct: 117 KRNV 120
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O-
methyltransferase; trimeric coiled coil assembly; 2.80A
{Sulfolobus tokodaii} SCOP: c.66.1.7
Length = 231
Score = 58.8 bits (143), Expect = 1e-11
Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 15/76 (19%)
Query: 22 IIQPH----------LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSI 71
+ L++ KVLEIG+G GY T +I+E+ +V+ +E ++ N +
Sbjct: 53 TTALNLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEI---VDKVVSVEINEKMYNYAS 109
Query: 72 QNIL-HSNARLLT-DG 85
+ + ++N +L+ DG
Sbjct: 110 KLLSYYNNIKLILGDG 125
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type
fold, S-adenosyl-L- methionine; HET: SAH; 1.80A
{Escherichia coli}
Length = 210
Score = 54.9 bits (133), Expect = 3e-10
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 13/63 (20%)
Query: 22 IIQPH----------LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSI 71
I QP+ L S+VLEIG+GSGY T +++ L V +E + L +
Sbjct: 60 ISQPYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHL---VQHVCSVERIKGLQWQAR 116
Query: 72 QNI 74
+ +
Sbjct: 117 RRL 119
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics
consortium (SGC), methyltransferase, phosphoprotein,
S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Length = 292
Score = 47.6 bits (112), Expect = 2e-07
Identities = 23/106 (21%), Positives = 44/106 (41%), Gaps = 4/106 (3%)
Query: 20 LSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNA 79
L +++P VL++G G+LT I+ + +++G++ +L++S+ QNI H
Sbjct: 37 LRVLKPEWFRGRDVLDLGCNVGHLTLSIACKWGPS-RMVGLDIDSRLIHSARQNIRHY-- 93
Query: 80 RLLTDGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAESWMNIP 125
L + + L E E + P + S I
Sbjct: 94 -LSEELRLPPQTLEGDPGAEGEEGTTTVRKRSCFPASLTASRGPIA 138
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics,
PSI-2, protein STRU initiative, northeast structural
genomics consortium, NESG; HET: SAH; 2.30A {Bacillus
cereus} PDB: 2gh1_A
Length = 284
Score = 45.3 bits (107), Expect = 1e-06
Identities = 9/43 (20%), Positives = 20/43 (46%)
Query: 26 HLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVN 68
+ + +++ G G GYL ++ L+ + GI+ L+
Sbjct: 19 KITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLA 61
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine,
structural genomics structure initiative, PSI; HET:
SAM; 2.20A {Clostridium thermocellum atcc 27405}
Length = 197
Score = 43.8 bits (103), Expect = 3e-06
Identities = 15/69 (21%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 22 IIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNI----LHS 77
I+ + E V++ G+G T ++ L+ G+V G + + + ++ + + L
Sbjct: 15 YIKMFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLID 74
Query: 78 NARLLTDGH 86
L+ DGH
Sbjct: 75 RVTLIKDGH 83
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein
structure initiative; 2.46A {Archaeoglobus fulgidus}
Length = 240
Score = 41.4 bits (97), Expect = 2e-05
Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 5/60 (8%)
Query: 16 ILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTG-QVIGIEHVPQLVNSSIQNI 74
+ L P+ +VL+IG G G + E G + IG++ ++
Sbjct: 28 VKARLRRYIPYFKGCRRVLDIGCGRGEFLELCKEE----GIESIGVDINEDMIKFCEGKF 83
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein
structure initiative, PSI, center for eukaryotic
structural genomics; HET: MSE SAH T8N; 1.12A
{Saccharomyces cerevisiae}
Length = 299
Score = 41.6 bits (97), Expect = 2e-05
Identities = 12/69 (17%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 22 IIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARL 81
I + H E ++++G G G T +++ + Q+IG + ++ ++ S
Sbjct: 29 IDEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTY 88
Query: 82 LTDGHIKFV 90
++ F
Sbjct: 89 ---KNVSFK 94
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2,
NYSGXRC, structural genomics, protein structure
initiative; HET: SAM; 2.72A {Aquifex aeolicus}
Length = 219
Score = 40.8 bits (96), Expect = 3e-05
Identities = 14/65 (21%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 26 HLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDG 85
L E VL++G+G+G+ +S+++ G+V I+ V + N L
Sbjct: 34 GLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAID-----VQEEMVNYAWEKVNKLGLK 88
Query: 86 HIKFV 90
+++ +
Sbjct: 89 NVEVL 93
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative,
structural genomics, NEW YORK SGX research center for
structural genomics; 1.86A {Methanosarcina mazei}
Length = 276
Score = 40.7 bits (95), Expect = 4e-05
Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 14 SAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVN 68
+ L L +KVLE G G G T ++++ N ++ I+ P+ +
Sbjct: 22 AETLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKN-NPDAEITSIDISPESLE 75
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM,
structural GEN consortium, SGC, transferase; HET: SAM;
2.50A {Homo sapiens} SCOP: c.66.1.13
Length = 336
Score = 40.6 bits (94), Expect = 5e-05
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 10/63 (15%)
Query: 22 IIQPH----------LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSI 71
I P +N VLE GSGSG ++ +S+ + S G+VI E + +
Sbjct: 88 ITFPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAK 147
Query: 72 QNI 74
+N
Sbjct: 148 KNY 150
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine,
nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A
{Methanothermobacter thermautotrophicusorganism_taxid}
PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Length = 298
Score = 40.6 bits (94), Expect = 5e-05
Identities = 11/58 (18%), Positives = 20/58 (34%), Gaps = 1/58 (1%)
Query: 17 LTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNI 74
L + + IG G LT ++ + +V +E P + S + I
Sbjct: 110 LLKNEAALGRFRRGERAVFIGGGPLPLTGILLSHVYG-MRVNVVEIEPDIAELSRKVI 166
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon
SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Length = 383
Score = 40.5 bits (94), Expect = 5e-05
Identities = 13/64 (20%), Positives = 30/64 (46%)
Query: 27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGH 86
E + VL++G G+G + S+L+ G+VIG++ + + + + + + +
Sbjct: 81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPS 140
Query: 87 IKFV 90
V
Sbjct: 141 RSNV 144
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI,
protein structure initiative, joint center for structu
genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Length = 277
Score = 40.0 bits (93), Expect = 9e-05
Identities = 16/122 (13%), Positives = 38/122 (31%), Gaps = 13/122 (10%)
Query: 13 ISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQ 72
S I L + E ++++ G GSG + +++ + S+G+V E + +
Sbjct: 101 SSFIAMMLDV-----KEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAES 155
Query: 73 NILHSNARLLTDGHIKFVALGMIKRIETVELMMKFDRYDFLPHAPAESWMNIPVCINYTA 132
N+ ++ ++ G ++ D P +
Sbjct: 156 NLTKWGLIERVTIKVRDISEGFDEK--------DVDALFLDVPDPWNYIDKCWEALKGGG 207
Query: 133 TM 134
Sbjct: 208 RF 209
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 1.70A {Bacillus thuringiensis}
Length = 242
Score = 38.7 bits (90), Expect = 2e-04
Identities = 9/41 (21%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 20 LSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGI 60
+ + ++ + ++VL++G G GY T +S + +G+
Sbjct: 44 IPFFEQYVKKEAEVLDVGCGDGYGTYKLSRT---GYKAVGV 81
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown
function, PSI-2, protein structure initiative; 2.09A
{Methanosarcina mazei}
Length = 234
Score = 38.6 bits (90), Expect = 2e-04
Identities = 15/103 (14%), Positives = 33/103 (32%), Gaps = 12/103 (11%)
Query: 6 IGAAIGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQ 65
I I EN +L++G+G+G L+ + E ++
Sbjct: 21 RRKFIPCFDDFYGVSVSIASVDTENPDILDLGAGTGLLSAFLMEK-YPEATFTLVD---- 75
Query: 66 LVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKFD 108
S + + + R + +K++ + K+D
Sbjct: 76 ---MSEKMLEIAKNRFRGNLKVKYI----EADYSKYDFEEKYD 111
>3cc8_A Putative methyltransferase; structural genomics, joint center for
structural genomics, JCSG, protein structure
initiative, PS transferase; 1.64A {Bacillus cereus}
Length = 230
Score = 38.2 bits (89), Expect = 3e-04
Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 10/79 (12%)
Query: 17 LTYLSIIQPHL-----NENSKVLEIGSGSGYLTNMISELMNSTG-QVIGIEHVPQLVNSS 70
Y + + P+L E +VL+IG SG L + G +V GIE P+ +
Sbjct: 15 GHYYNAVNPNLLKHIKKEWKEVLDIGCSSGAL----GAAIKENGTRVSGIEAFPEAAEQA 70
Query: 71 IQNILHSNARLLTDGHIKF 89
+ + H + + +
Sbjct: 71 KEKLDHVVLGDIETMDMPY 89
>3bkx_A SAM-dependent methyltransferase; YP_807781.1,
cyclopropane-fatty-acyl-phospholipid synthase-L
protein, methyltransferase domain; 1.85A {Lactobacillus
casei}
Length = 275
Score = 37.7 bits (87), Expect = 5e-04
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGI 60
+ K+LEIG G G L+ ++++ + S+G V GI
Sbjct: 41 VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGI 74
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann
superfamily, S-adenosyl-L-M (SAM) binding, nucleolus;
HET: SAM; 1.73A {Aeropyrum pernix}
Length = 233
Score = 37.4 bits (86), Expect = 5e-04
Identities = 14/63 (22%), Positives = 31/63 (49%), Gaps = 8/63 (12%)
Query: 5 KIGAAIGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVP 64
K+ AA+ L + E ++L +G SG + +S+++ G++ G+E P
Sbjct: 61 KLAAALLKGLIEL--------PVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAP 112
Query: 65 QLV 67
+++
Sbjct: 113 RVM 115
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.30A {Bacteroides thetaiotaomicron}
PDB: 3t0i_A* 3svz_A* 3sxj_A*
Length = 257
Score = 37.5 bits (87), Expect = 5e-04
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 11 GGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGI 60
G A +S I L +++K+ +IG G+G T +++ + GQ+ GI
Sbjct: 29 GSPEATRKAVSFI-NELTDDAKIADIGCGTGGQTLFLADYVK--GQITGI 75
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2,
protein structure initiative; 2.50A {Sulfolobus
solfataricus}
Length = 170
Score = 36.9 bits (86), Expect = 6e-04
Identities = 5/42 (11%), Positives = 16/42 (38%), Gaps = 3/42 (7%)
Query: 27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVN 68
+ +++ G G+G+ + E ++ I+ +
Sbjct: 15 EGKKGVIVDYGCGNGFYCKYLLEF---ATKLYCIDINVIALK 53
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI,
intermolecular contacts, R specificity, tetramer,
disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB:
3lga_A* 3lhd_C*
Length = 255
Score = 37.3 bits (86), Expect = 7e-04
Identities = 20/116 (17%), Positives = 43/116 (37%), Gaps = 5/116 (4%)
Query: 27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGH 86
++ ++E G GSG LT ++ ++ G+V+ E + +NI +
Sbjct: 91 ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIK 150
Query: 87 IKFVALGMIKRIETVELMMKFDRYDFLPHA-----PAESWMNIPVCINYTATMPEG 137
+K + G+ + ++ + HA P ++ C N + E
Sbjct: 151 LKDIYEGIEEENVDHVILDLPQPERVVEHAAKALKPGGFFVAYTPCSNQVMRLHEK 206
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Length = 305
Score = 37.4 bits (86), Expect = 7e-04
Identities = 8/44 (18%), Positives = 15/44 (34%)
Query: 18 TYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIE 61
+ +Q HL V + G + Q++GI+
Sbjct: 107 HFRRALQRHLRPGCVVASVPCGWMSELLALDYSACPGVQLVGID 150
>1ve3_A Hypothetical protein PH0226; dimer, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, unknown function, NPPSFA; HET: SAM; 2.10A
{Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 227
Score = 36.8 bits (85), Expect = 8e-04
Identities = 7/39 (17%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 22 IIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGI 60
++ ++ + KVL++ G G + ++ + +V+G+
Sbjct: 31 LLMKYMKKRGKVLDLACGVGGFSFLLEDY---GFEVVGV 66
>1yb2_A Hypothetical protein TA0852; structural genomics,
methyltransferase, thermoplasma acidoph midwest center
for structural genomics, MCSG; 2.01A {Thermoplasma
acidophilum} SCOP: c.66.1.13
Length = 275
Score = 36.6 bits (84), Expect = 0.001
Identities = 13/64 (20%), Positives = 27/64 (42%), Gaps = 5/64 (7%)
Query: 13 ISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQ 72
S I+ + +LE+G GSG +++ I +N G + +E + ++
Sbjct: 99 ASYIIMRCGL-----RPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMD 153
Query: 73 NILH 76
N+
Sbjct: 154 NLSE 157
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI,
tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Length = 258
Score = 36.2 bits (83), Expect = 0.002
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 31 SKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH 76
+VLE G+GSG LT ++ + G V E P + + +N+
Sbjct: 98 MRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRA 143
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase,
BFR250, NESG, structural genomics, PSI-2; HET: SAM;
1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A
3t7s_A* 3t7r_A* 3t7t_A*
Length = 267
Score = 36.0 bits (83), Expect = 0.002
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 10 IGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGI 60
G L LS I +L E S + +IG G+G T +++ + GQV G+
Sbjct: 28 PGSPEVTLKALSFI-DNLTEKSLIADIGCGTGGQTMVLAGHVT--GQVTGL 75
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET:
SAM; 1.60A {Rhodopseudomonas palustris}
Length = 211
Score = 34.5 bits (79), Expect = 0.005
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 5/44 (11%)
Query: 25 PHLNENSKVLEIGSGSGYLTNMISELMNSTG-QVIGIEHVPQLV 67
L +K+LE+G G+GY + G V + P+L
Sbjct: 39 GELPAGAKILELGCGAGYQAEAMLAA----GFDVDATDGSPELA 78
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN
joint center for structural genomics, JCSG; HET: SAH;
2.11A {Anabaena variabilis atcc 29413}
Length = 245
Score = 34.6 bits (79), Expect = 0.005
Identities = 10/46 (21%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Query: 15 AILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGI 60
A++ L + N +++ G+G T +S+ +VIG+
Sbjct: 42 AVVVDLPRFELLFNPELPLIDFACGNGTQTKFLSQFF---PRVIGL 84
>2p7i_A Hypothetical protein; putative methyltransferase, structural
genomics, joint cente structural genomics, JCSG; 1.74A
{Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41
PDB: 2p7h_A
Length = 250
Score = 34.4 bits (79), Expect = 0.005
Identities = 8/51 (15%), Positives = 17/51 (33%), Gaps = 6/51 (11%)
Query: 19 YLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTG-QVIGIEHVPQLVN 68
+ P +LE+GS G T + + +E + ++
Sbjct: 33 MVRAFTPFF-RPGNLLELGSFKGDFT----SRLQEHFNDITCVEASEEAIS 78
>3ege_A Putative methyltransferase from antibiotic biosyn pathway;
YP_324569.1, putative methyltransferase from antibiotic
BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Length = 261
Score = 34.1 bits (78), Expect = 0.008
Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 26 HLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLV 67
+L + S + +IG+G+G + L N V +E +
Sbjct: 31 NLPKGSVIADIGAGTGGYSV---ALANQGLFVYAVEPSIVMR 69
>2avd_A Catechol-O-methyltransferase; structural genomics, structural
genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens}
SCOP: c.66.1.1
Length = 229
Score = 33.9 bits (78), Expect = 0.008
Identities = 14/80 (17%), Positives = 28/80 (35%), Gaps = 7/80 (8%)
Query: 32 KVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFV- 90
K L++G+ +GY ++ + + G+V+ E Q + + I
Sbjct: 72 KALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAE----AEHKIDLRL 127
Query: 91 --ALGMIKRIETVELMMKFD 108
AL + + FD
Sbjct: 128 KPALETLDELLAAGEAGTFD 147
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium,
SGC, methyltransferase, LOC84291, transferase; HET:
SAH; 1.30A {Homo sapiens}
Length = 215
Score = 33.9 bits (77), Expect = 0.010
Identities = 8/48 (16%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 21 SIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVN 68
++++P L ++L +G G+ L+ + V +++ +V
Sbjct: 34 ALLEPELRPEDRILVLGCGNSALSYELFL--GGFPNVTSVDYSSVVVA 79
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, MCSG, midwest center for
structural genomics; 2.19A {Deinococcus radiodurans}
Length = 226
Score = 33.5 bits (76), Expect = 0.012
Identities = 12/60 (20%), Positives = 22/60 (36%), Gaps = 3/60 (5%)
Query: 8 AAIGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLV 67
+ G LT+ + L ++VLE G G G + + + P+L+
Sbjct: 27 RVLSGPDPELTFDLWLSRLLTPQTRVLEAGCGHGPDA---ARFGPQAARWAAYDFSPELL 83
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer
[decarboxylating]; alpha and beta protein (A/B) class;
HET: MES; 2.30A {Methanocaldococcus jannaschii}
Length = 183
Score = 33.3 bits (77), Expect = 0.013
Identities = 12/66 (18%), Positives = 28/66 (42%), Gaps = 10/66 (15%)
Query: 27 LNENSKVLEIGSGSGYLTNMIS-ELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDG 85
LN++ V+++G GSG ++ E+ V I+++ +I+ N
Sbjct: 33 LNKDDVVVDVGCGSG----GMTVEIAKRCKFVYAIDYLDG----AIEVT-KQNLAKFNIK 83
Query: 86 HIKFVA 91
+ + +
Sbjct: 84 NCQIIK 89
>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold,
structural genomics, joint center for structur genomics,
JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}
Length = 202
Score = 33.2 bits (75), Expect = 0.015
Identities = 18/95 (18%), Positives = 31/95 (32%), Gaps = 4/95 (4%)
Query: 23 IQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLL 82
++ E +LE GSG T + +EL V +E + +
Sbjct: 24 LRMAYEEAEVILEYGSGGS--TVVAAELPGK--HVTSVESDRAWARMMKAWLAANPPAEG 79
Query: 83 TDGHIKFVALGMIKRIETVELMMKFDRYDFLPHAP 117
T+ +I + +G K+ Y P A
Sbjct: 80 TEVNIVWTDIGPTGDWGHPVSDAKWRSYPDYPLAV 114
>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold
methyltransferase, tRNA modification,
S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A
{Escherichia coli} PDB: 3dxx_A* 3dxz_A*
Length = 218
Score = 33.0 bits (76), Expect = 0.015
Identities = 17/72 (23%), Positives = 24/72 (33%), Gaps = 13/72 (18%)
Query: 28 NENSKVLEIGSGSG-YLTNMISELMNSTGQVIGIE-HVP-------QLVNSSIQN--ILH 76
E LEIG G G L M + +GIE H P + N ++
Sbjct: 33 REAPVTLEIGFGMGASLVAMAKD--RPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMC 90
Query: 77 SNARLLTDGHIK 88
+A + I
Sbjct: 91 HDAVEVLHKMIP 102
>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor
analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB:
1qan_A* 1qao_A* 1qaq_A* 2erc_A
Length = 244
Score = 33.3 bits (77), Expect = 0.015
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 26 HLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIE 61
LNE+ + EIGSG G+ T EL+ V IE
Sbjct: 27 RLNEHDNIFEIGSGKGHFT---LELVQRCNFVTAIE 59
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural
genomics, beta barrel, rossmann fold, tetramer; HET:
SAH; 1.95A {Methanothermobacterthermautotrophicus}
SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Length = 192
Score = 33.1 bits (76), Expect = 0.017
Identities = 11/48 (22%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNI 74
+N +++G G+G +T EL +V I+ P+ ++++ N+
Sbjct: 31 PGKNDVAVDVGCGTGGVT---LELAGRVRRVYAIDRNPEAISTTEMNL 75
>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR
{Streptococcus pneumoniae} SCOP: c.66.1.24
Length = 245
Score = 32.9 bits (76), Expect = 0.018
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Query: 26 HLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIE 61
+L E V EIG+G G+LT ++L + QV IE
Sbjct: 26 NLKETDTVYEIGTGKGHLT---TKLAKISKQVTSIE 58
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted
transferase, predicted O-methyltransferase, PFAM
PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Length = 260
Score = 32.9 bits (75), Expect = 0.019
Identities = 14/118 (11%), Positives = 42/118 (35%), Gaps = 7/118 (5%)
Query: 27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGH 86
+ ++ ++G+G+G ++ +V E ++ + +++ + +
Sbjct: 34 DDRACRIADLGAGAGAAGMAVA-ARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSA-R 91
Query: 87 IKFVALGMIKRIET-VELMMKFDRYDFL----PHAPAESWMNIPVCINYTATMPEGSY 139
I+ + + R + VE + + + + P+ A M EG +
Sbjct: 92 IEVLEADVTLRAKARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLF 149
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate,
antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A
{Streptomyces venezuelae}
Length = 239
Score = 32.8 bits (75), Expect = 0.022
Identities = 7/44 (15%), Positives = 17/44 (38%), Gaps = 5/44 (11%)
Query: 19 YLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTG-QVIGIE 61
+++ E S +L++ G+G ++ G+E
Sbjct: 30 IADLVRSRTPEASSLLDVACGTGTHLEHFTKE----FGDTAGLE 69
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase,
transferase; HET: SAH PG4; 2.70A {Rhodobacter
capsulatus}
Length = 204
Score = 32.5 bits (74), Expect = 0.022
Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 3/51 (5%)
Query: 26 HLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH 76
+ +IG GSG ++ E + G+ I IE + + +NI
Sbjct: 52 APRRGELLWDIGGGSGSVS---VEWCLAGGRAITIEPRADRIENIQKNIDT 99
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like
methyltransferase fold; 2.00A {Streptococcus
pneumoniae} PDB: 3ku1_A*
Length = 225
Score = 32.2 bits (73), Expect = 0.031
Identities = 11/59 (18%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 20 LSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSN 78
L ++ +++ + +L++GS YL + I E V S+++N+
Sbjct: 6 LELVASFVSQGAILLDVGSDHAYLP-IELVERGQIKSAIAGEVVEGPYQSAVKNVEAHG 63
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem
adenosyl-L-methionine, rRNA, methyltransferase,
RNA-binding processing; HET: AMP; 1.60A
{Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A*
3gry_A* 3fyd_A 3fyc_A*
Length = 295
Score = 32.2 bits (74), Expect = 0.032
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Query: 26 HLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIE 61
+L ++ VLEIG G G LT EL + +V IE
Sbjct: 47 NLTKDDVVLEIGLGKGILT---EELAKNAKKVYVIE 79
>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis}
SCOP: c.66.1.53
Length = 213
Score = 32.2 bits (74), Expect = 0.032
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 13/68 (19%)
Query: 28 NENSKVLEIGSGSG-YLTNMISELMNSTGQVIGIE-HVP-------QLVNSSIQNI--LH 76
N+N +E+G+G G +++ M + N IGIE ++ +S QN+ L+
Sbjct: 37 NDNPIHIEVGTGKGQFISGMAKQ--NPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLN 94
Query: 77 SNARLLTD 84
+A LTD
Sbjct: 95 IDADTLTD 102
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A
{Synechocystis SP}
Length = 232
Score = 31.9 bits (73), Expect = 0.038
Identities = 16/80 (20%), Positives = 32/80 (40%), Gaps = 7/80 (8%)
Query: 32 KVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFV- 90
+VLEIG GY ++ + GQ+I + P + + + I
Sbjct: 75 QVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAG----VAEKISLRL 130
Query: 91 --ALGMIKRIETVELMMKFD 108
AL ++++ + + +FD
Sbjct: 131 GPALATLEQLTQGKPLPEFD 150
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans
agrobacterium tumefaciens, structural genomics, PSI-2;
HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Length = 259
Score = 32.1 bits (73), Expect = 0.040
Identities = 6/29 (20%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 32 KVLEIGSGSGYLTNMISELMNSTGQVIGI 60
++G G G T ++++ + GI
Sbjct: 36 NGYDLGCGPGNSTELLTDRYG-VNVITGI 63
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP,
structural genomics, PSI, protein structure initiative;
2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB:
1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Length = 298
Score = 32.0 bits (72), Expect = 0.041
Identities = 9/47 (19%), Positives = 18/47 (38%), Gaps = 2/47 (4%)
Query: 22 IIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVN 68
+I+ + VL++G G G G+ G++ +N
Sbjct: 57 LIRLYTKRGDSVLDLGCGKGGDLLKYER--AGIGEYYGVDIAEVSIN 101
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics,
PSI-2, protein structure initiative; 2.80A {Bacillus
thuringiensis serovarkonkukian}
Length = 220
Score = 31.8 bits (72), Expect = 0.041
Identities = 13/35 (37%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
Query: 27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIE 61
VLE G G+G LTN + V GIE
Sbjct: 43 NKSFGNVLEFGVGTGNLTNKLLLA---GRTVYGIE 74
>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich,
S-adenosylmeth dependent, structural genomics, PSI;
2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53
Length = 214
Score = 31.8 bits (73), Expect = 0.041
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 13/68 (19%)
Query: 28 NENSKVLEIGSGSG-YLTNMISELMNSTGQVIGIE-HVP-------QLVNSSIQNI--LH 76
N+N +E+GSG G +++ M + N IGI+ +++ + NI L
Sbjct: 40 NDNPIHVEVGSGKGAFVSGMAKQ--NPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLW 97
Query: 77 SNARLLTD 84
+ LTD
Sbjct: 98 VDGSDLTD 105
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal,
antibiotic resistance, aminoglycoside,
S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces
SP}
Length = 218
Score = 32.0 bits (72), Expect = 0.041
Identities = 12/76 (15%), Positives = 28/76 (36%), Gaps = 17/76 (22%)
Query: 28 NENSKVLEIGSGSG-YLTNMISELMNSTGQVIGIE-HVPQLVNSSIQ-----------NI 74
+ VL++G+G G + + + N + V+ ++ ++ S + N+
Sbjct: 26 QYDDVVLDVGTGDGKHPYKVARQ--NPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNL 83
Query: 75 --LHSNARLLTDGHIK 88
L + A L
Sbjct: 84 LYLWATAERLPPLSGV 99
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase
domain, structural genomics; HET: NHE CIT; 2.00A
{Corynebacterium glutamicum atcc 13032}
Length = 195
Score = 31.7 bits (72), Expect = 0.045
Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Query: 22 IIQPHLNENSKVLEIGSGSGYLTNMISELMNSTG-QVIGIEHVPQLV 67
+I +K+L+ G G G + +S+ G V+G + P L+
Sbjct: 39 LIDAMAPRGAKILDAGCGQGRIGGYLSKQ----GHDVLGTDLDPILI 81
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1,
putative methyltransferase; 1.90A {Anabaena variabilis
atcc 29413}
Length = 279
Score = 31.6 bits (72), Expect = 0.058
Identities = 10/29 (34%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Query: 32 KVLEIGSGSGYLTNMISELMNSTGQVIGI 60
+L++G G+G LT I++ S +V+G
Sbjct: 60 FILDLGCGTGQLTEKIAQ---SGAEVLGT 85
>3lpm_A Putative methyltransferase; structural genomics, protein
structure initiative, NEW YORK structural genomix
research consortium, nysgxrc; 2.40A {Listeria
monocytogenes}
Length = 259
Score = 31.3 bits (71), Expect = 0.065
Identities = 8/48 (16%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 31 SKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSN 78
K++++ SG+G + ++S + +++G+E +L + + +++ ++
Sbjct: 51 GKIIDLCSGNGIIPLLLST--RTKAKIVGVEIQERLADMAKRSVAYNQ 96
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding,
DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A
{Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Length = 263
Score = 31.4 bits (71), Expect = 0.069
Identities = 7/44 (15%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Query: 19 YLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTG-QVIGIE 61
++++ H + + +L++ G+G +++ V G+E
Sbjct: 40 LAALVRRHSPKAASLLDVACGTGMHLRHLADS----FGTVEGLE 79
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase;
structural genomics, joint center for structural
genomics; HET: MSE SAM; 1.15A {Methanococcus
maripaludis}
Length = 219
Score = 31.3 bits (71), Expect = 0.069
Identities = 6/29 (20%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 32 KVLEIGSGSGYLTNMISELMNSTGQVIGI 60
++IGSG G L+ +++ + + +
Sbjct: 46 TCIDIGSGPGALSIALAKQSD--FSIRAL 72
>1vlm_A SAM-dependent methyltransferase; possible histamine
methyltransferase, structural genomics, JCSG, protein
struc initiative, PSI; 2.20A {Thermotoga maritima}
SCOP: c.66.1.41
Length = 219
Score = 31.3 bits (71), Expect = 0.070
Identities = 9/40 (22%), Positives = 15/40 (37%), Gaps = 7/40 (17%)
Query: 26 HLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQ 65
L + +EIG G+G + IG+E +
Sbjct: 44 CLLPEGRGVEIGVGTGRFAVPL-------KIKIGVEPSER 76
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold,
protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo
sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A*
2aox_A* 1jqe_A* 2aow_A*
Length = 292
Score = 31.2 bits (70), Expect = 0.071
Identities = 12/105 (11%), Positives = 32/105 (30%), Gaps = 7/105 (6%)
Query: 13 ISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMI-----SELMNSTGQVIGIEHVPQLV 67
+ L + K+L IG G+G + I ++ +E + +
Sbjct: 36 MDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQI 95
Query: 68 NSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKFDRYDF 112
+ + + L + + + + + ++DF
Sbjct: 96 AKYKELV--AKTSNLENVKFAWHKETSSEYQSRMLEKKELQKWDF 138
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA,
2'-O-methylation, coiled-coil, methyltransfer binding,
rRNA processing; HET: SAM; 2.60A {Sulfolobus
solfataricus} PDB: 3id5_B* 3pla_E*
Length = 232
Score = 31.2 bits (70), Expect = 0.073
Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 8/60 (13%)
Query: 5 KIGAAIGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVP 64
K+ AI + + + +KVL +G+ SG + +S+++ G+ G+E P
Sbjct: 60 KLAGAI--------LKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSP 111
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle
structural genomics center for infectio disease; 1.75A
{Burkholderia pseudomallei}
Length = 279
Score = 31.4 bits (72), Expect = 0.078
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 26 HLNENSKVLEIGSGSGYLTNMISE-LMNSTGQVIGIE 61
+++EIG G G LT + L + +E
Sbjct: 39 RPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVE 75
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH;
1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A*
3mte_A*
Length = 225
Score = 31.3 bits (70), Expect = 0.079
Identities = 14/98 (14%), Positives = 32/98 (32%), Gaps = 10/98 (10%)
Query: 28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH-------SNAR 80
+ +++G+G G ++ + IGI+ V + + + I+ SN
Sbjct: 23 QFDRVHIDLGTGDGRNIYKLAI-NDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVV 81
Query: 81 LLTDG--HIKFVALGMIKRIETVELMMKFDRYDFLPHA 116
+ + F + I + Y P+
Sbjct: 82 FVIAAAESLPFELKNIADSISILFPWGTLLEYVIKPNR 119
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM,
structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus
thermophilus} PDB: 2yr0_A
Length = 263
Score = 31.1 bits (70), Expect = 0.084
Identities = 9/55 (16%), Positives = 18/55 (32%), Gaps = 3/55 (5%)
Query: 11 GGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQ 65
I T ++ E LE+G G+G + + + I ++
Sbjct: 21 EVAGQIATAMASAVHPKGEEPVFLELGVGTGRIALPLIAR---GYRYIALDADAA 72
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural
genomics, midwest CENT structural genomics, protein
structure initiative; 1.80A {Streptococcus agalactiae}
Length = 230
Score = 31.0 bits (70), Expect = 0.086
Identities = 11/55 (20%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 20 LSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNI 74
L + ++ + +++L++GS YL + ++ I E V S+++N+
Sbjct: 12 LQKVANYVPKGARLLDVGSDHAYLPIFLLQM-GYCDFAIAGEVVNGPYQSALKNV 65
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET:
SAH; 3.10A {Arabidopsis thaliana}
Length = 950
Score = 31.4 bits (70), Expect = 0.087
Identities = 9/31 (29%), Positives = 18/31 (58%)
Query: 31 SKVLEIGSGSGYLTNMISELMNSTGQVIGIE 61
S +++ G GSG L + + + S +IG++
Sbjct: 723 STLVDFGCGSGSLLDSLLDYPTSLQTIIGVD 753
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Length = 242
Score = 31.1 bits (71), Expect = 0.090
Identities = 18/80 (22%), Positives = 30/80 (37%), Gaps = 7/80 (8%)
Query: 32 KVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFV- 90
KVLE+G+ +GY +S + GQVI + + + + IK
Sbjct: 63 KVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAK----QEHKIKLRL 118
Query: 91 --ALGMIKRIETVELMMKFD 108
AL + + +FD
Sbjct: 119 GPALDTLHSLLNEGGEHQFD 138
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich,
structural genomics, PSI-2, protein structure
initiative; 2.21A {Corynebacterium diphtheriae}
Length = 178
Score = 30.9 bits (70), Expect = 0.091
Identities = 7/50 (14%), Positives = 16/50 (32%), Gaps = 1/50 (2%)
Query: 27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILH 76
+ + +IG GSG + + E + + N ++
Sbjct: 23 PKPHETLWDIGGGSGSIAIEWL-RSTPQTTAVCFEISEERRERILSNAIN 71
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural
genomics, protein structure initiative, PSI; 2.50A
{Clostridium acetobutylicum} SCOP: c.66.1.43
Length = 246
Score = 30.9 bits (70), Expect = 0.094
Identities = 5/44 (11%), Positives = 13/44 (29%), Gaps = 5/44 (11%)
Query: 19 YLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTG-QVIGIE 61
+ + L++ G+G LT + ++
Sbjct: 27 IIEKCVENNLVFDDYLDLACGTGNLTENLCPK----FKNTWAVD 66
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics,
tubercidin, structu genomics, structural genomics
consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB:
4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A*
3qow_A* 3qox_A* 4er3_A* 3sr4_A*
Length = 438
Score = 31.0 bits (69), Expect = 0.098
Identities = 7/70 (10%), Positives = 21/70 (30%), Gaps = 9/70 (12%)
Query: 27 LNENSKVLEIGSGSGYLTNMISELMNSTG--QVIGIEHVPQLVNSSIQNILHSNARL--- 81
+ ++ +++GSG G ++ ++ +T G+E + +
Sbjct: 171 MTDDDLFVDLGSGVG---QVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWY 227
Query: 82 -LTDGHIKFV 90
Sbjct: 228 GKKHAEYTLE 237
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella
burnetii}
Length = 225
Score = 30.7 bits (70), Expect = 0.099
Identities = 11/80 (13%), Positives = 27/80 (33%), Gaps = 7/80 (8%)
Query: 32 KVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFV- 90
KV++IG+ +GY + + G +I + + + + + I
Sbjct: 67 KVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAG----LSDKIGLRL 122
Query: 91 --ALGMIKRIETVELMMKFD 108
A + + ++D
Sbjct: 123 SPAKDTLAELIHAGQAWQYD 142
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis;
1.98A {Coxiella burnetii}
Length = 255
Score = 30.9 bits (71), Expect = 0.099
Identities = 17/80 (21%), Positives = 31/80 (38%), Gaps = 17/80 (21%)
Query: 26 HLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIE-----------HVPQLVNSSI--Q 72
H + ++EIG G G LT+ L+ + +E Q N +I
Sbjct: 26 HPQKTDTLVEIGPGRGALTD---YLLTECDNLALVEIDRDLVAFLQKKYNQQKNITIYQN 82
Query: 73 NILHSN-ARLLTDGHIKFVA 91
+ L + + + TD ++ V
Sbjct: 83 DALQFDFSSVKTDKPLRVVG 102
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural
genomics, PSI-2, protein structure initiative; 1.50A
{Listeria monocytogenes str}
Length = 244
Score = 30.6 bits (69), Expect = 0.11
Identities = 12/59 (20%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Query: 20 LSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSN 78
L + ++ +N ++ +IGS YL + + I E V S+ + + S
Sbjct: 12 LEKVASYITKNERIADIGSDHAYLP-CFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSG 69
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial
transcription factor, transcription initiation; 2.60A
{Saccharomyces cerevisiae} SCOP: c.66.1.24
Length = 353
Score = 31.1 bits (70), Expect = 0.11
Identities = 11/56 (19%), Positives = 21/56 (37%), Gaps = 2/56 (3%)
Query: 13 ISAILTYLSIIQPHLN-ENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLV 67
+ I L + + + + E KVL++ G G + + Q +E L
Sbjct: 41 YNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYC-PRQYSLLEKRSSLY 95
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G
joint center for structural genomics, JCSG; HET: MSE;
1.90A {Exiguobacterium sibiricum 255-15}
Length = 243
Score = 30.5 bits (69), Expect = 0.12
Identities = 7/44 (15%), Positives = 23/44 (52%), Gaps = 6/44 (13%)
Query: 19 YLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTG-QVIGIE 61
+++ + + ++ +IG G+G T ++++ +V G++
Sbjct: 23 WVAWVLEQVEPGKRIADIGCGTGTATLLLAD-----HYEVTGVD 61
>2y1w_A Histone-arginine methyltransferase CARM1; histone modification;
HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A*
3b3g_A 2v74_B* 2v7e_A
Length = 348
Score = 30.7 bits (69), Expect = 0.14
Identities = 18/93 (19%), Positives = 36/93 (38%), Gaps = 13/93 (13%)
Query: 18 TYLSIIQ--PHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNIL 75
TY I ++ VL++G GSG L+ ++ ++ +E + + ++
Sbjct: 37 TYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGAR--KIYAVEAST--MAQHAEVLV 92
Query: 76 HSNARLLTDGHIKFVALGMIKRIETVELMMKFD 108
SN I + ++E V L + D
Sbjct: 93 KSNN---LTDRIVVIP----GKVEEVSLPEQVD 118
>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine
methyltransferase 4, APO catalytic domain, regulator,
mRNA processing; 2.55A {Rattus norvegicus}
Length = 480
Score = 30.5 bits (68), Expect = 0.14
Identities = 18/93 (19%), Positives = 36/93 (38%), Gaps = 13/93 (13%)
Query: 18 TYLSIIQ--PHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNIL 75
TY I ++ VL++G GSG L+ ++ ++ +E + + ++
Sbjct: 145 TYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGAR--KIYAVEAST--MAQHAEVLV 200
Query: 76 HSNARLLTDGHIKFVALGMIKRIETVELMMKFD 108
SN I + ++E V L + D
Sbjct: 201 KSNN---LTDRIVVIP----GKVEEVSLPEQVD 226
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin
metabolism, S-adenosyl-methionine; 1.80A {Geobacter
metallireducens}
Length = 204
Score = 30.3 bits (68), Expect = 0.15
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 26 HLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLT 83
L ++ + +IG+GS ++ S LM + G++ +E PQ + N+ AR +T
Sbjct: 37 RLQDDLVMWDIGAGSASVSIEASNLMPN-GRIFALERNPQYLGFIRDNLKKFVARNVT 93
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide
antibiotics biosynthesis, structural genomics; 2.00A
{Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Length = 299
Score = 30.3 bits (68), Expect = 0.15
Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 5/44 (11%)
Query: 19 YLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTG-QVIGIE 61
+ VLE+ +G G LT +L G +V +E
Sbjct: 72 AREFATRTGPVSGPVLELAAGMGRLTFPFLDL----GWEVTALE 111
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA
capping, mRNA processing, nucleus, phosphoprotein,
RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*
Length = 313
Score = 30.3 bits (67), Expect = 0.16
Identities = 12/100 (12%), Positives = 31/100 (31%), Gaps = 4/100 (4%)
Query: 16 ILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQ--N 73
I +L ++ + VL++G G G + + +++ + V Q
Sbjct: 21 IGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRIN--KLVCTDIADVSVKQCQQRYE 78
Query: 74 ILHSNARLLTDGHIKFVALGMIKRIETVELMMKFDRYDFL 113
+ + +F+ K + + +D
Sbjct: 79 DMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQMCFDIC 118
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH;
2.30A {Leptospira interrogans}
Length = 239
Score = 30.0 bits (68), Expect = 0.18
Identities = 7/47 (14%), Positives = 23/47 (48%)
Query: 32 KVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSN 78
+++EIG+ +GY + + + G+++ + + N + + +
Sbjct: 63 RIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENG 109
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A
{Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A*
3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Length = 266
Score = 30.1 bits (68), Expect = 0.18
Identities = 28/82 (34%), Positives = 37/82 (45%), Gaps = 13/82 (15%)
Query: 10 IGGISAILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTG-QVIGIEHVPQLVN 68
GG+ A LS I+ LNENSKVL+IGSG G I+E G GI +
Sbjct: 38 SGGLEATKKILSDIE--LNENSKVLDIGSGLGGGCMYINE---KYGAHTHGI-------D 85
Query: 69 SSIQNILHSNARLLTDGHIKFV 90
+ +N R+ + I F
Sbjct: 86 ICSNIVNMANERVSGNNKIIFE 107
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural
genomics, joint center for structural genom JCSG; HET:
SAH; 2.10A {Pseudomonas putida KT2440}
Length = 227
Score = 30.2 bits (68), Expect = 0.19
Identities = 8/33 (24%), Positives = 19/33 (57%), Gaps = 5/33 (15%)
Query: 29 ENSKVLEIGSGSGYLTNMISELMNSTG-QVIGI 60
+ +VL++G G G+L +++ G + +G+
Sbjct: 52 QPERVLDLGCGEGWLLRALADR----GIEAVGV 80
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1;
HET: PGE GOL; 2.00A {Clostridium acetobutylicum}
Length = 209
Score = 29.9 bits (67), Expect = 0.20
Identities = 11/56 (19%), Positives = 20/56 (35%), Gaps = 4/56 (7%)
Query: 27 LNENSKVLEIGSGSGYLTNMISELMNSTG-QVIGIEHVPQLVNSSIQNILHSNARL 81
N + VL+ G+G + G + GIE + + +N +L
Sbjct: 21 SNLDKTVLDCGAGGDLPPL---SIFVEDGYKTYGIEISDLQLKKAENFSRENNFKL 73
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related
protein; ubiquinone/menaquinone biosynthesis
methyltransferase-relate protein; HET: SAI; 2.35A
{Thermotoga maritima} SCOP: c.66.1.41
Length = 260
Score = 29.8 bits (67), Expect = 0.21
Identities = 8/39 (20%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 22 IIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGI 60
++ +L +VL++G G+G + + E +V+ +
Sbjct: 47 FLEEYLKNPCRVLDLGGGTGKWSLFLQER---GFEVVLV 82
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase,
S-adenosylmethionine, structural GE NPPSFA; HET: SAM;
2.20A {Aquifex aeolicus}
Length = 248
Score = 29.6 bits (66), Expect = 0.25
Identities = 17/78 (21%), Positives = 29/78 (37%), Gaps = 10/78 (12%)
Query: 22 IIQPH----------LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSI 71
II P LN+ +VLE G+GSG L ++SE+ +E + ++
Sbjct: 74 IIYPKDSFYIALKLNLNKEKRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEFYKTAQKNL 133
Query: 72 QNILHSNARLLTDGHIKF 89
+ + K
Sbjct: 134 KKFNLGKNVKFFNVDFKD 151
>1xxl_A YCGJ protein; structural genomics, protein structure initiative,
PSI, NEW YORK SGX research center for structural
genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP:
c.66.1.41 PDB: 2glu_A*
Length = 239
Score = 29.8 bits (67), Expect = 0.25
Identities = 9/29 (31%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Query: 32 KVLEIGSGSGYLTNMISELMNSTGQVIGI 60
+VL+IG+G+G+ S + + IG+
Sbjct: 24 RVLDIGAGAGHTALAFSPYV---QECIGV 49
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for
structural genomics, JCSG, protein structure initiative
transferase; 1.90A {Geobacter sulfurreducens pca}
Length = 210
Score = 29.5 bits (67), Expect = 0.25
Identities = 7/43 (16%), Positives = 19/43 (44%)
Query: 32 KVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNI 74
V+ G G G + + ++ + +V+ I+ V + + +
Sbjct: 59 LVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRML 101
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH;
1.37A {Mesembryanthemum crystallinum}
Length = 237
Score = 29.6 bits (67), Expect = 0.26
Identities = 8/47 (17%), Positives = 20/47 (42%)
Query: 32 KVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSN 78
K +E+G +GY + + + G++ I+ + + I +
Sbjct: 73 KTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAG 119
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation,
transferase; HET: SAH TYD; 1.40A {Micromonospora
chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A*
4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Length = 416
Score = 29.6 bits (67), Expect = 0.27
Identities = 6/35 (17%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
Query: 27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIE 61
+ ++EIG G + + + + + +G E
Sbjct: 105 TGPDPFIVEIGCNDGIM---LRTIQEAGVRHLGFE 136
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural
genomics, protein structure initiative; HET: SAM; 1.98A
{Mycobacterium tuberculosis} SCOP: c.66.1.13
Length = 280
Score = 29.7 bits (66), Expect = 0.27
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 31 SKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNI 74
++VLE G+GSG LT + + GQVI E + +N+
Sbjct: 101 ARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNV 144
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural
genomics, NPPSFA, national PR protein structural and
functional analyses; HET: SAH; 2.60A {Thermus
thermophilus}
Length = 211
Score = 29.4 bits (66), Expect = 0.28
Identities = 10/39 (25%), Positives = 19/39 (48%), Gaps = 5/39 (12%)
Query: 23 IQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIE 61
++ L +LE+G+G+GY + Q +G+E
Sbjct: 30 LKGLLPPGESLLEVGAGTGYWLRRLPY-----PQKVGVE 63
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet;
adenosine dimethyltransferase, rRNA modification,
transferase, translation; 2.10A {Escherichia coli}
SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Length = 252
Score = 29.4 bits (67), Expect = 0.28
Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 3/36 (8%)
Query: 26 HLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIE 61
+ + ++EIG G LT + Q+ IE
Sbjct: 18 NPQKGQAMVEIGPGLAALT---EPVGERLDQLTVIE 50
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto
dimethyladenosine transferase, structural genomics,
structural genomics consortium; 1.89A {Plasmodium
falciparum}
Length = 299
Score = 29.6 bits (67), Expect = 0.28
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Query: 26 HLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIE 61
+ + VLEIG G+G LT +L+ +VI I+
Sbjct: 39 KIKSSDIVLEIGCGTGNLT---VKLLPLAKKVITID 71
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET:
SAH; 2.00A {Corynebacterium glutamicum atcc 13032}
Length = 203
Score = 29.4 bits (66), Expect = 0.31
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 5/37 (13%)
Query: 32 KVLEIGSGSGYLTNMISELMNSTG-QVIGIEHVPQLV 67
+L++GSG+G T ++ L G Q+ G+E +LV
Sbjct: 44 VILDVGSGTGRWTGHLASL----GHQIEGLEPATRLV 76
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics,
structural genomics consortium; HET: SAM; 1.90A {Homo
sapiens} SCOP: c.66.1.24
Length = 285
Score = 29.2 bits (66), Expect = 0.34
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 26 HLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIE 61
L VLE+G G+G +T +L+ +V+ E
Sbjct: 25 ALRPTDVVLEVGPGTGNMT---VKLLEKAKKVVACE 57
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA
methyltransferase, mtase, anti resistance,
methyltransferase, RNA-binding; 1.44A {Aquifex
aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Length = 249
Score = 29.4 bits (67), Expect = 0.35
Identities = 11/36 (30%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 26 HLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIE 61
++ E + V+E+G G+G LT ++ L + ++ IE
Sbjct: 28 NIEEGNTVVEVGGGTGNLTKVL--LQHPLKKLYVIE 61
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117,
NESG, structural genomics, PSI-2, protein structure
initiative; 2.25A {Corynebacterium glutamicum}
Length = 221
Score = 29.2 bits (66), Expect = 0.39
Identities = 9/84 (10%), Positives = 25/84 (29%), Gaps = 13/84 (15%)
Query: 32 KVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFV- 90
+ I +G + I + + I+ + + + + ++F+
Sbjct: 59 GAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAG---YSPSRVRFLL 115
Query: 91 --ALGMIKRIETVELMMKFDRYDF 112
L ++ R+ D Y
Sbjct: 116 SRPLDVMSRLAN-------DSYQL 132
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.4 bits (65), Expect = 0.41
Identities = 16/110 (14%), Positives = 30/110 (27%), Gaps = 36/110 (32%)
Query: 20 LSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSS--------- 70
LS+ P + + +L + ++I + V+ V +L S
Sbjct: 378 LSVFPPSAHIPTILLSL-----IWFDVIKSDV----MVV----VNKLHKYSLVEKQPKES 424
Query: 71 ------IQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKFDRYDFLP 114
I L H ++ + FD D +P
Sbjct: 425 TISIPSIYLELKVKLENEYALHRSI--------VDHYNIPKTFDSDDLIP 466
>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine,
phosphorylation, M7G, spout MT, tRNA processing; HET:
SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E
Length = 246
Score = 28.9 bits (65), Expect = 0.49
Identities = 11/61 (18%), Positives = 22/61 (36%), Gaps = 1/61 (1%)
Query: 28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHI 87
+ + +IG G G L +S ++G+E Q+ N I+ +
Sbjct: 48 TKKVTIADIGCGFGGLMIDLSPAFPEDL-ILGMEIRVQVTNYVEDRIIALRNNTASKHGF 106
Query: 88 K 88
+
Sbjct: 107 Q 107
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase;
structural genomics, PSI-2, protein structure
initiative; 2.35A {Listeria monocytogenes str}
Length = 253
Score = 28.7 bits (64), Expect = 0.49
Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 29 ENSKVLEIGSGSGYLTNMISELMNSTGQVIGI 60
VL++G G G+ +E + +V+GI
Sbjct: 44 NQKTVLDLGCGFGWHCIYAAE--HGAKKVLGI 73
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta
with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB:
3dul_A*
Length = 223
Score = 28.7 bits (65), Expect = 0.51
Identities = 14/47 (29%), Positives = 27/47 (57%)
Query: 32 KVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSN 78
+LEIG+ GY T ++ ++S G+V+ +E + + + NI +N
Sbjct: 61 NILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERAN 107
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD
factor, fixation, symbiosis, alpha/beta structure; HET:
SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Length = 216
Score = 28.6 bits (64), Expect = 0.51
Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 10/60 (16%)
Query: 32 KVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVA 91
LEIG +G T ++ ++ I+ + I + R HI + A
Sbjct: 54 NGLEIGCAAGAFTEKLAPH---CKRLTVID-------VMPRAIGRACQRTKRWSHISWAA 103
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET:
SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Length = 218
Score = 28.7 bits (64), Expect = 0.52
Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Query: 32 KVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLV 67
VLE+ SG+GY T +S L +V ++ +++
Sbjct: 49 DVLELASGTGYWTRHLSGL---ADRVTALDGSAEMI 81
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold,
protein-cofactor-substrate complex; HET: SAH FRE; 2.70A
{Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Length = 247
Score = 28.5 bits (64), Expect = 0.56
Identities = 7/47 (14%), Positives = 19/47 (40%)
Query: 32 KVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSN 78
+EIG +GY + + G+++ ++ + + I +
Sbjct: 82 NTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAG 128
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics,
PSI-biology, protein structure in northeast structural
genomics; 2.20A {Methanosarcina mazei}
Length = 235
Score = 28.6 bits (64), Expect = 0.60
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 22 IIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGI 60
II +L E+ ++L+IG GSG ++ ++ V GI
Sbjct: 23 IIHNYLQEDDEILDIGCGSGKISLELASK---GYSVTGI 58
>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1,
S-adenosyl-L-methionine, tRNA Pro structural genomics,
structural genomics consortium, SGC; HET: SAM; 1.55A
{Homo sapiens}
Length = 235
Score = 28.1 bits (63), Expect = 0.80
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIE 61
+ +IG G G L +S L T ++G+E
Sbjct: 45 QAQVEFADIGCGYGGLLVELSPLFPDTL-ILGLE 77
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural
genomics, NEW YORK structura genomics research
consortium; 1.88A {Klebsiella pneumoniae subsp}
Length = 248
Score = 28.0 bits (63), Expect = 0.89
Identities = 11/47 (23%), Positives = 25/47 (53%)
Query: 32 KVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSN 78
++LEIG+ GY T ++ + + GQ++ +E + +N+ +
Sbjct: 66 RILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAG 112
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase,
structural genomics, joint cente structural genomics,
JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP:
c.66.1.41
Length = 260
Score = 28.2 bits (63), Expect = 0.92
Identities = 8/35 (22%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 26 HLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGI 60
L N +VL++ +G G++ N + + +V+
Sbjct: 34 ALKGNEEVLDVATGGGHVANAFAPFV---KKVVAF 65
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target
base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET:
5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27
d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A*
2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*
Length = 421
Score = 28.1 bits (62), Expect = 1.1
Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 3/68 (4%)
Query: 28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQ-NILHSNARLLTDGH 86
+VLE G E + + +G+E P+ ++ + ++ LL +
Sbjct: 38 PRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPPWAEGILADF-LLWEPG 96
Query: 87 IKF-VALG 93
F + LG
Sbjct: 97 EAFDLILG 104
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent
methyltransferase; NP_104914.1; HET: MSE; 1.60A
{Mesorhizobium loti}
Length = 243
Score = 27.8 bits (62), Expect = 1.2
Identities = 6/29 (20%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 32 KVLEIGSGSGYLTNMISELMNSTGQVIGI 60
+++++G G G+ E + V+G+
Sbjct: 46 RIVDLGCGFGWFCRWAHE--HGASYVLGL 72
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural
genomics, protein structure initiative, PSI-2; 1.95A
{Galdieria sulphuraria} SCOP: c.66.1.18
Length = 297
Score = 27.9 bits (62), Expect = 1.2
Identities = 6/34 (17%), Positives = 13/34 (38%), Gaps = 2/34 (5%)
Query: 27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGI 60
L +K L++G+G G + + +
Sbjct: 80 LQRQAKGLDLGAGYGGAARFLVR--KFGVSIDCL 111
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase
binding, liver cytosol, transferase-transferase
inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus}
PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A*
2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A
1r74_A* 2azt_A*
Length = 293
Score = 27.7 bits (61), Expect = 1.3
Identities = 14/91 (15%), Positives = 34/91 (37%), Gaps = 8/91 (8%)
Query: 19 YLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTG-QVIGIEHVPQLVNSSIQNILHS 77
L +++ H +VL++ G+G + M+ E G V ++ +++ +++ +
Sbjct: 49 LLGLLRQH--GCHRVLDVACGTGVDSIMLVEE----GFSVTSVDASDKMLKYALKERWNR 102
Query: 78 NARLLTDGHIKFVALGMIKRIETVELMMKFD 108
D + + V FD
Sbjct: 103 RKEPAFD-KWVIEEANWLTLDKDVPAGDGFD 132
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis}
PDB: 3jwj_A
Length = 217
Score = 27.6 bits (61), Expect = 1.4
Identities = 8/47 (17%), Positives = 21/47 (44%), Gaps = 6/47 (12%)
Query: 15 AILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIE 61
++ L +V+++G G G L ++ + + Q+ G++
Sbjct: 20 GVVAALKQSNAR-----RVIDLGCGQGNLLKILLK-DSFFEQITGVD 60
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold,
methyltransferase fold, SAM-dependent methyltransferase;
HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB:
3vc2_A*
Length = 312
Score = 27.1 bits (60), Expect = 1.8
Identities = 14/111 (12%), Positives = 27/111 (24%), Gaps = 24/111 (21%)
Query: 16 ILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTG-QVIGI----EHVPQLVNSS 70
++ +L P + +++ G G G M G +V G+ N
Sbjct: 108 LMDHLGQAGP----DDTLVDAGCGRGGSMVMAHR---RFGSRVEGVTLSAAQA-DFGNRR 159
Query: 71 IQ--------NILHSNARLLTDGHIKFVALGMIKRIETVELMMKFDRYDFL 113
+ N A E+ + D +
Sbjct: 160 ARELRIDDHVRSRVCNMLDTPFDKGAVTASWN---NESTMYVDLHDLFSEH 207
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 27.3 bits (60), Expect = 1.8
Identities = 17/109 (15%), Positives = 35/109 (32%), Gaps = 41/109 (37%)
Query: 8 AAI--GGISAILTY---LSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQ--VIG- 59
AI G ++A + +++ ++EI N N Q V
Sbjct: 1810 IAINPGRVAASFSQEALQYVVERVGKRTGWLVEI-------VNY-----NVENQQYVAAG 1857
Query: 60 -IEHVPQLVNSSIQNILHSNARLLTDGHIKFVALGMIKRIETVELMMKF 107
+ + + N +L+ IK +++I+ +EL
Sbjct: 1858 DLRALDTVTN-----VLN---------FIK------LQKIDIIELQKSL 1886
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A
{Lechevalieria aerocolonigenes}
Length = 273
Score = 27.1 bits (60), Expect = 2.0
Identities = 8/34 (23%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
Query: 27 LNENSKVLEIGSGSGYLTNMISELMNSTGQVIGI 60
+ +VL++G G G ++ +V GI
Sbjct: 59 VRSGDRVLDVGCGIGKPAVRLAT--ARDVRVTGI 90
>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain,
beta-barrel, mixed alpha-beta, hexamer; 2.90A
{Saccharomyces cerevisiae} SCOP: c.66.1.6
Length = 328
Score = 26.9 bits (59), Expect = 2.0
Identities = 17/88 (19%), Positives = 37/88 (42%), Gaps = 13/88 (14%)
Query: 18 TYLSIIQ--PHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNIL 75
+Y + I L ++ VL++G G+G L+ ++ VIG++ + + + ++
Sbjct: 25 SYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAK--HVIGVDMSSIIEMA--KELV 80
Query: 76 HSNARLLTDGHIKFVALGMIKRIETVEL 103
N I + ++E V L
Sbjct: 81 ELNG---FSDKITLLR----GKLEDVHL 101
>3fut_A Dimethyladenosine transferase; methyltransferase,
dimethyltransferase, dual-specific methyltransferase,
16S rRNA methyltransferase; 1.52A {Thermus
thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Length = 271
Score = 26.7 bits (60), Expect = 2.2
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
Query: 33 VLEIGSGSGYLTNMISELMNSTGQVIGIE 61
V E+G G G LT L+ + +V IE
Sbjct: 50 VFEVGPGLGALT---RALLEAGAEVTAIE 75
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.90A {Escherichia coli} SCOP:
c.66.1.21
Length = 256
Score = 26.7 bits (59), Expect = 2.7
Identities = 8/35 (22%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 26 HLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGI 60
+ +++L++GSGSG + + + GI
Sbjct: 33 RMKPGTRILDLGSGSGEMLCTWAR--DHGITGTGI 65
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine
methyltransferase, methylation; HET: SAH; 2.61A
{Arabidopsis thaliana}
Length = 376
Score = 26.7 bits (58), Expect = 2.8
Identities = 18/93 (19%), Positives = 37/93 (39%), Gaps = 13/93 (13%)
Query: 18 TYLSIIQ--PHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNIL 75
Y + + H E VL++G+GSG L ++ +V +E + + ++
Sbjct: 50 AYFNAVFQNKHHFEGKTVLDVGTGSGILAIWSAQAGAR--KVYAVEATK--MADHARALV 105
Query: 76 HSNARLLTDGHIKFVALGMIKRIETVELMMKFD 108
+N D ++ + +E + L K D
Sbjct: 106 KANNL---DHIVEVIE----GSVEDISLPEKVD 131
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics,
structural genomics consortium, SGC; HET: SAH; 2.00A
{Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*
Length = 340
Score = 26.6 bits (58), Expect = 2.9
Identities = 20/88 (22%), Positives = 40/88 (45%), Gaps = 13/88 (14%)
Query: 18 TYLSIIQ--PHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNIL 75
+Y I PH+ ++ VL++G G+G L+ ++ +V+G++ L + +I+
Sbjct: 51 SYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAK--KVLGVDQSEILYQA--MDII 106
Query: 76 HSNARLLTDGHIKFVALGMIKRIETVEL 103
N + I + +IE V L
Sbjct: 107 RLNKL---EDTITLIK----GKIEEVHL 127
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase,
structural genomics, structural genomics consortium,
SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38
Length = 309
Score = 26.5 bits (59), Expect = 3.0
Identities = 6/30 (20%), Positives = 16/30 (53%)
Query: 29 ENSKVLEIGSGSGYLTNMISELMNSTGQVI 58
S V++ + G T+ ++ L+ + G++
Sbjct: 102 PGSHVIDACAAPGNKTSHLAALLKNQGKIF 131
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase,
transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Length = 232
Score = 26.4 bits (59), Expect = 3.2
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 32 KVLEIGSGSGYLTNMISELMNSTGQVIGIE 61
+LEIG+ GY + + + + V IE
Sbjct: 74 NILEIGTAIGYSSMQFASI-SDDIHVTTIE 102
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum}
PDB: 3jwi_A
Length = 219
Score = 26.5 bits (58), Expect = 3.3
Identities = 9/31 (29%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 31 SKVLEIGSGSGYLTNMISELMNSTGQVIGIE 61
KV+++G G G L +++ + S Q+ G++
Sbjct: 31 KKVIDLGCGEGNLLSLLLKD-KSFEQITGVD 60
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation,
transferase transferase inhibitor complex; HET: SAH;
1.13A {Rattus norvegicus} PDB: 3nwe_A* 3oe5_A* 3ozr_A*
3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A*
1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A*
3s68_A* 2zlb_A 2zth_A* ...
Length = 221
Score = 26.5 bits (59), Expect = 3.3
Identities = 12/80 (15%), Positives = 32/80 (40%), Gaps = 7/80 (8%)
Query: 32 KVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFV- 90
VLE+G+ GY ++ L+ +++ +E P + Q + + + +
Sbjct: 61 LVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGL----QDKVTILN 116
Query: 91 --ALGMIKRIETVELMMKFD 108
+ +I +++ + D
Sbjct: 117 GASQDLIPQLKKKYDVDTLD 136
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural
genomics, protein structure initiative, pyrococc
furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Length = 230
Score = 26.0 bits (58), Expect = 3.9
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 18 TYLSIIQPHLNENSKVLEIGSGSG 41
+ ++ L LEIG+G
Sbjct: 44 SRYIFLKTFLRGGEVALEIGTGHT 67
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase,
methyltransferase, methylation, trans
activator-transferase complex; HET: SAM; 2.00A
{Encephalitozoon cuniculi}
Length = 170
Score = 25.9 bits (57), Expect = 4.1
Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 4/32 (12%)
Query: 29 ENSKVLEIGSGSGYLTNMISELMNSTGQVIGI 60
E VL++G+ +G I+E + V+
Sbjct: 23 EMKIVLDLGTSTGV----ITEQLRKRNTVVST 50
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S
rRNA, NESG, structural genomics, PSI, protein structure
initiative; HET: SAM; 2.80A {Escherichia coli} SCOP:
c.66.1.33
Length = 269
Score = 26.0 bits (57), Expect = 4.2
Identities = 9/33 (27%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 28 NENSKVLEIGSGSGYLTNMISELMNSTGQVIGI 60
++ + VL+IG G GY T+ ++ + G+
Sbjct: 84 DKATAVLDIGCGEGYYTHAFADAL-PEITTFGL 115
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken
structural genomics/proteomics initiative, RSGI; HET:
SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 252
Score = 25.9 bits (57), Expect = 4.7
Identities = 10/37 (27%), Positives = 20/37 (54%), Gaps = 5/37 (13%)
Query: 26 HLNENSKVLEIGSGSGYLTNMISELMNSTG-QVIGIE 61
E +VL++ G+G T ++E G +V+G++
Sbjct: 38 AKREVRRVLDLACGTGIPTLELAER----GYEVVGLD 70
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase,
S-adenosyl-L-methionine, RNA metabolism, mRNA
processing, methyltransferase, poxvirus; HET: SAH;
2.70A {Vaccinia virus}
Length = 302
Score = 25.9 bits (56), Expect = 5.5
Identities = 9/53 (16%), Positives = 17/53 (32%), Gaps = 2/53 (3%)
Query: 16 ILTYLSIIQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVN 68
I Y S + KVL I G+G ++ ++ + +
Sbjct: 35 ISMYCSKTFLDDSNKRKVLAIDFGNGA--DLEKYFYGEIALLVATDPDADAIA 85
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus
norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*
Length = 349
Score = 25.8 bits (56), Expect = 5.9
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 18 TYLSIIQ--PHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVP 64
TY + + HL ++ VL++GSG+G L ++ +VIGIE
Sbjct: 53 TYRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGAR--KVIGIECSS 99
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase,
SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus
delbrueckii subsp}
Length = 205
Score = 25.2 bits (56), Expect = 6.7
Identities = 12/59 (20%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 18 TYLSI--IQPHLNENSKVLEIGSGSGYLTNMISELMNSTGQVIGIEHVPQLVNSSIQNI 74
T L++ I+ + + V ++G+GSG L I+ V+ + + + ++ +N
Sbjct: 47 TQLAMLGIERAMVKPLTVADVGTGSGIL--AIAAHKLGAKSVLATDISDESMTAAEENA 103
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A
{Brucella suis}
Length = 361
Score = 25.4 bits (56), Expect = 7.0
Identities = 10/49 (20%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 43 LTNMISELMNSTGQVIGIEHVPQLVNSSIQNILHSNARLLTDGHIKFVA 91
L M+ L N G+ + E + +L+ + ++H + DG + ++
Sbjct: 296 LALMV--LQNRQGRQLPYEIIRRLLYLVVDVVVHV-HNGVHDGTGRHIS 341
>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK
Ser/Thr protein kinase fold, Ser/Thr protein kinase,
TRA; 1.95A {Leishmania major}
Length = 362
Score = 25.3 bits (56), Expect = 8.1
Identities = 5/27 (18%), Positives = 16/27 (59%)
Query: 63 VPQLVNSSIQNILHSNARLLTDGHIKF 89
V +L+ + + ++H +++ HI++
Sbjct: 112 VTELMRTDLAQVIHDQRIVISPQHIQY 138
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.391
Gapped
Lambda K H
0.267 0.0528 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,103,453
Number of extensions: 115445
Number of successful extensions: 430
Number of sequences better than 10.0: 1
Number of HSP's gapped: 419
Number of HSP's successfully gapped: 149
Length of query: 139
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 55
Effective length of database: 4,356,429
Effective search space: 239603595
Effective search space used: 239603595
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.3 bits)