Query psy576
Match_columns 159
No_of_seqs 109 out of 1336
Neff 10.0
Searched_HMMs 46136
Date Fri Aug 16 17:18:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy576.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/576hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0328|consensus 100.0 1.3E-32 2.7E-37 195.0 10.0 144 15-158 235-378 (400)
2 KOG0333|consensus 100.0 6.9E-30 1.5E-34 193.4 13.8 139 18-157 490-628 (673)
3 KOG0331|consensus 100.0 3.1E-30 6.8E-35 197.8 10.8 140 16-156 309-451 (519)
4 COG0513 SrmB Superfamily II DN 100.0 1.2E-29 2.5E-34 198.9 11.9 138 16-153 243-380 (513)
5 PRK11776 ATP-dependent RNA hel 100.0 4.7E-29 1E-33 194.0 13.6 137 19-156 216-352 (460)
6 KOG0332|consensus 100.0 1.3E-28 2.8E-33 180.1 13.1 143 13-155 297-445 (477)
7 PRK04837 ATP-dependent RNA hel 100.0 6.2E-29 1.3E-33 191.6 10.2 135 20-155 230-364 (423)
8 PRK10590 ATP-dependent RNA hel 100.0 2.3E-28 5.1E-33 189.8 13.2 137 19-156 219-355 (456)
9 KOG0330|consensus 100.0 1.3E-28 2.7E-33 180.9 10.9 141 16-157 271-411 (476)
10 PRK11192 ATP-dependent RNA hel 100.0 3.5E-28 7.7E-33 187.9 13.1 139 18-156 217-355 (434)
11 KOG0326|consensus 100.0 9E-29 1.9E-33 178.1 8.5 144 13-157 290-433 (459)
12 PRK01297 ATP-dependent RNA hel 100.0 2.1E-27 4.6E-32 185.4 16.3 136 19-155 309-444 (475)
13 PTZ00110 helicase; Provisional 100.0 1E-27 2.2E-32 189.4 14.3 137 19-156 349-487 (545)
14 PRK11634 ATP-dependent RNA hel 100.0 1.7E-27 3.8E-32 190.1 14.2 136 19-155 219-354 (629)
15 PRK04537 ATP-dependent RNA hel 100.0 1.4E-27 3E-32 189.4 13.2 136 19-155 231-366 (572)
16 PLN00206 DEAD-box ATP-dependen 99.9 3.2E-27 6.9E-32 185.8 13.7 136 20-156 340-478 (518)
17 PTZ00424 helicase 45; Provisio 99.9 2.7E-27 5.8E-32 181.3 11.4 139 18-156 239-377 (401)
18 TIGR00614 recQ_fam ATP-depende 99.9 9.3E-27 2E-31 181.5 14.5 125 32-156 211-336 (470)
19 PRK11057 ATP-dependent DNA hel 99.9 1.5E-26 3.3E-31 184.8 14.2 125 32-156 222-346 (607)
20 PLN03137 ATP-dependent DNA hel 99.9 2.6E-26 5.6E-31 188.7 13.0 122 34-155 667-789 (1195)
21 KOG0335|consensus 99.9 4.2E-26 9E-31 173.0 12.5 154 2-156 269-447 (482)
22 KOG0344|consensus 99.9 6.3E-26 1.4E-30 173.7 13.3 142 18-159 359-501 (593)
23 TIGR01389 recQ ATP-dependent D 99.9 7.3E-26 1.6E-30 180.8 13.6 125 31-155 209-333 (591)
24 KOG0342|consensus 99.9 1.1E-25 2.4E-30 169.4 10.2 143 15-158 299-442 (543)
25 COG0514 RecQ Superfamily II DN 99.9 2.8E-25 6E-30 173.4 12.5 143 13-156 198-340 (590)
26 KOG0340|consensus 99.9 8.7E-25 1.9E-29 159.2 10.9 140 17-157 223-365 (442)
27 cd00079 HELICc Helicase superf 99.9 1.2E-23 2.7E-28 137.3 13.6 118 32-149 12-131 (131)
28 KOG0341|consensus 99.9 8.3E-25 1.8E-29 161.4 8.5 122 31-153 407-528 (610)
29 KOG0338|consensus 99.9 2.1E-24 4.6E-29 163.5 10.5 130 30-159 410-539 (691)
30 TIGR03817 DECH_helic helicase/ 99.9 3.7E-24 8.1E-29 173.9 12.6 118 33-152 260-385 (742)
31 KOG0345|consensus 99.9 4.6E-24 1E-28 160.1 11.0 140 16-156 226-367 (567)
32 KOG0336|consensus 99.9 5.6E-24 1.2E-28 157.9 9.0 138 19-157 438-576 (629)
33 PRK04914 ATP-dependent helicas 99.9 4.5E-23 9.7E-28 169.7 14.8 123 31-153 478-603 (956)
34 KOG0346|consensus 99.9 2.2E-23 4.7E-28 155.6 10.6 155 1-156 207-413 (569)
35 KOG0343|consensus 99.9 5.5E-23 1.2E-27 157.1 12.9 139 15-154 283-423 (758)
36 KOG0327|consensus 99.9 5.8E-23 1.3E-27 150.9 10.6 141 15-158 235-375 (397)
37 KOG0350|consensus 99.9 1.7E-22 3.6E-27 152.8 10.7 139 17-156 401-543 (620)
38 KOG0334|consensus 99.9 2.6E-22 5.7E-27 162.1 11.5 154 2-155 553-722 (997)
39 COG1111 MPH1 ERCC4-like helica 99.9 1.3E-21 2.8E-26 148.4 14.2 130 25-155 341-483 (542)
40 PRK13767 ATP-dependent helicas 99.9 1.8E-21 3.8E-26 161.0 14.9 97 45-141 283-385 (876)
41 KOG4284|consensus 99.9 3.9E-22 8.5E-27 154.9 10.2 137 19-155 238-381 (980)
42 KOG0339|consensus 99.9 5.8E-22 1.3E-26 150.4 10.4 140 18-157 439-579 (731)
43 PHA02653 RNA helicase NPH-II; 99.9 1.8E-21 4E-26 155.9 13.1 108 45-155 394-516 (675)
44 TIGR01587 cas3_core CRISPR-ass 99.9 6.5E-21 1.4E-25 144.2 15.0 121 31-154 206-337 (358)
45 PRK12898 secA preprotein trans 99.9 2.4E-21 5.2E-26 153.7 13.0 128 24-154 450-587 (656)
46 TIGR00580 mfd transcription-re 99.9 4.4E-21 9.5E-26 158.2 14.6 110 45-154 659-771 (926)
47 PF00271 Helicase_C: Helicase 99.9 1.2E-21 2.5E-26 117.4 8.3 78 64-141 1-78 (78)
48 KOG0347|consensus 99.9 1.8E-22 4E-27 154.2 5.9 114 45-158 462-575 (731)
49 KOG0348|consensus 99.9 2.8E-21 6E-26 147.4 11.4 141 16-157 392-558 (708)
50 PRK10917 ATP-dependent DNA hel 99.9 9.3E-21 2E-25 153.3 15.0 108 45-152 470-588 (681)
51 PRK09200 preprotein translocas 99.9 4.6E-21 1E-25 154.9 13.2 122 31-154 411-542 (790)
52 PRK10689 transcription-repair 99.9 8.8E-21 1.9E-25 159.3 14.8 109 45-153 808-919 (1147)
53 TIGR01970 DEAH_box_HrpB ATP-de 99.9 3.7E-21 7.9E-26 157.2 12.2 117 37-155 201-338 (819)
54 KOG0351|consensus 99.9 2.3E-21 4.9E-26 158.9 10.2 146 12-157 451-596 (941)
55 PRK11664 ATP-dependent RNA hel 99.9 4.7E-21 1E-25 156.7 11.1 133 20-155 183-341 (812)
56 TIGR00643 recG ATP-dependent D 99.9 2.5E-20 5.4E-25 149.8 14.8 108 45-152 447-565 (630)
57 TIGR00631 uvrb excinuclease AB 99.8 4E-20 8.6E-25 148.3 14.2 125 30-155 424-555 (655)
58 PRK02362 ski2-like helicase; P 99.8 2.4E-20 5.2E-25 152.4 13.2 109 45-153 242-397 (737)
59 TIGR03714 secA2 accessory Sec 99.8 3.5E-20 7.6E-25 148.9 13.0 122 31-155 407-539 (762)
60 PRK13766 Hef nuclease; Provisi 99.8 1.1E-19 2.3E-24 149.5 15.6 125 29-154 344-480 (773)
61 PHA02558 uvsW UvsW helicase; P 99.8 1.1E-19 2.4E-24 142.8 13.1 115 31-145 327-444 (501)
62 PRK05298 excinuclease ABC subu 99.8 1.6E-19 3.4E-24 145.4 14.1 122 31-153 429-557 (652)
63 TIGR00963 secA preprotein tran 99.8 1.8E-19 3.9E-24 144.2 13.6 122 31-154 388-518 (745)
64 PRK09751 putative ATP-dependen 99.8 7.4E-20 1.6E-24 155.4 11.5 107 45-151 243-383 (1490)
65 TIGR00603 rad25 DNA repair hel 99.8 3.3E-19 7.2E-24 143.1 13.2 123 29-156 477-610 (732)
66 COG1202 Superfamily II helicas 99.8 1.1E-19 2.5E-24 139.9 9.2 152 2-153 379-553 (830)
67 PRK12906 secA preprotein trans 99.8 5.7E-19 1.2E-23 142.4 12.9 122 31-154 423-554 (796)
68 PRK00254 ski2-like helicase; P 99.8 8.7E-19 1.9E-23 143.0 12.6 116 37-154 231-389 (720)
69 smart00490 HELICc helicase sup 99.8 9.1E-19 2E-23 105.2 9.3 81 61-141 2-82 (82)
70 KOG0354|consensus 99.8 3.5E-18 7.5E-23 135.9 13.7 124 28-153 391-529 (746)
71 PRK01172 ski2-like helicase; P 99.8 3.7E-18 7.9E-23 138.6 13.6 109 45-154 235-379 (674)
72 TIGR02621 cas3_GSU0051 CRISPR- 99.8 5.1E-18 1.1E-22 137.8 13.2 101 45-150 271-388 (844)
73 PRK12900 secA preprotein trans 99.8 4.1E-18 8.8E-23 138.9 11.6 122 31-154 581-712 (1025)
74 COG1201 Lhr Lhr-like helicases 99.8 1.9E-17 4.1E-22 134.0 13.2 117 33-151 242-360 (814)
75 KOG0349|consensus 99.7 1E-17 2.2E-22 125.9 10.0 113 43-155 502-617 (725)
76 KOG0352|consensus 99.7 5.9E-18 1.3E-22 126.7 8.4 113 46-158 255-367 (641)
77 PRK11131 ATP-dependent RNA hel 99.7 1.8E-17 4E-22 139.2 12.0 109 44-155 284-413 (1294)
78 KOG0337|consensus 99.7 1.8E-18 3.8E-23 129.0 5.0 142 14-156 229-371 (529)
79 PLN03142 Probable chromatin-re 99.7 1.7E-16 3.6E-21 131.9 13.6 120 31-150 470-594 (1033)
80 COG1200 RecG RecG-like helicas 99.7 2.1E-16 4.6E-21 124.4 13.2 135 18-154 447-592 (677)
81 TIGR01967 DEAH_box_HrpA ATP-de 99.7 1E-16 2.2E-21 135.1 10.7 108 45-155 278-406 (1283)
82 COG1061 SSL2 DNA or RNA helica 99.7 1.4E-15 3E-20 117.9 13.9 109 31-140 267-376 (442)
83 TIGR03158 cas3_cyano CRISPR-as 99.6 1.5E-15 3.4E-20 114.9 10.9 85 45-138 271-357 (357)
84 COG1197 Mfd Transcription-repa 99.6 4.6E-15 1E-19 122.6 13.9 111 44-154 801-914 (1139)
85 PRK12904 preprotein translocas 99.6 3.8E-15 8.2E-20 121.0 13.0 122 31-154 413-574 (830)
86 KOG0353|consensus 99.6 6.3E-16 1.4E-20 114.8 7.7 141 15-155 284-469 (695)
87 PRK09694 helicase Cas3; Provis 99.6 1.2E-14 2.6E-19 119.7 14.7 95 45-142 559-664 (878)
88 COG4098 comFA Superfamily II D 99.6 6.6E-15 1.4E-19 107.8 10.6 117 36-154 293-417 (441)
89 COG1204 Superfamily II helicas 99.6 6.4E-15 1.4E-19 120.0 11.1 110 45-154 252-409 (766)
90 PRK09401 reverse gyrase; Revie 99.6 6.2E-15 1.3E-19 124.7 10.8 113 18-139 304-430 (1176)
91 PRK13104 secA preprotein trans 99.6 2.3E-14 4.9E-19 116.9 13.4 122 31-154 427-588 (896)
92 PRK14701 reverse gyrase; Provi 99.6 6.7E-15 1.4E-19 127.3 10.0 121 18-146 305-449 (1638)
93 PRK13107 preprotein translocas 99.6 6E-14 1.3E-18 114.3 12.4 122 31-154 432-592 (908)
94 TIGR00595 priA primosomal prot 99.5 6.9E-14 1.5E-18 110.0 11.1 98 59-156 271-384 (505)
95 COG1203 CRISPR-associated heli 99.5 1.3E-13 2.9E-18 112.7 12.9 106 45-153 439-550 (733)
96 COG0556 UvrB Helicase subunit 99.5 2.2E-13 4.8E-18 104.8 12.8 108 44-152 444-556 (663)
97 PRK11448 hsdR type I restricti 99.5 3.8E-13 8.3E-18 113.6 14.4 96 45-142 697-802 (1123)
98 KOG0329|consensus 99.5 8.9E-15 1.9E-19 103.5 3.0 106 13-154 251-356 (387)
99 TIGR01054 rgy reverse gyrase. 99.5 9.9E-13 2.1E-17 111.7 12.1 100 18-125 302-409 (1171)
100 COG1643 HrpA HrpA-like helicas 99.4 6.6E-13 1.4E-17 108.6 7.9 111 43-154 256-388 (845)
101 COG1205 Distinct helicase fami 99.4 2.8E-12 6E-17 106.0 11.1 121 32-152 290-421 (851)
102 KOG0384|consensus 99.4 7.9E-13 1.7E-17 109.3 7.3 125 28-152 679-810 (1373)
103 PRK05580 primosome assembly pr 99.4 2.2E-12 4.8E-17 104.8 9.9 99 58-156 438-552 (679)
104 KOG0385|consensus 99.4 3.7E-12 8.1E-17 101.5 10.7 120 30-149 469-593 (971)
105 KOG0947|consensus 99.4 3.6E-12 7.8E-17 103.6 10.1 111 43-153 564-723 (1248)
106 KOG0951|consensus 99.4 7.4E-12 1.6E-16 104.1 11.4 117 39-155 539-704 (1674)
107 KOG0390|consensus 99.4 1.4E-11 3.1E-16 99.4 12.7 120 31-150 577-702 (776)
108 KOG0948|consensus 99.4 1.3E-12 2.8E-17 104.0 6.5 115 39-153 376-539 (1041)
109 KOG0950|consensus 99.4 2.5E-12 5.4E-17 104.4 8.2 111 47-157 461-615 (1008)
110 KOG0953|consensus 99.3 2.4E-11 5.2E-16 94.1 12.2 109 42-152 353-476 (700)
111 KOG0387|consensus 99.3 2.9E-11 6.2E-16 96.8 10.6 120 30-149 528-652 (923)
112 KOG4150|consensus 99.3 2.2E-11 4.7E-16 95.0 9.3 108 45-152 524-639 (1034)
113 KOG0952|consensus 99.3 4.5E-11 9.8E-16 98.1 10.0 111 45-155 348-493 (1230)
114 KOG0922|consensus 99.2 1E-10 2.2E-15 92.2 9.5 118 37-155 249-392 (674)
115 PRK12903 secA preprotein trans 99.2 2.8E-10 6.1E-15 92.8 12.0 121 31-154 409-540 (925)
116 PRK12326 preprotein translocas 99.2 8.3E-10 1.8E-14 88.9 12.9 121 31-154 410-548 (764)
117 KOG0389|consensus 99.1 1.2E-09 2.6E-14 87.8 10.9 119 31-149 760-882 (941)
118 COG0553 HepA Superfamily II DN 99.0 4.6E-09 1E-13 87.6 12.9 119 32-150 692-817 (866)
119 KOG0923|consensus 99.0 8.9E-10 1.9E-14 87.1 8.0 108 43-151 470-604 (902)
120 PRK12901 secA preprotein trans 99.0 2.7E-09 5.8E-14 88.5 11.1 122 31-154 611-742 (1112)
121 PRK12899 secA preprotein trans 99.0 4.7E-09 1E-13 86.6 12.1 121 31-154 551-682 (970)
122 KOG0391|consensus 99.0 4.1E-09 8.9E-14 87.8 11.5 121 29-149 1257-1381(1958)
123 KOG0388|consensus 99.0 3.1E-09 6.6E-14 84.9 9.7 117 30-146 1026-1145(1185)
124 KOG0392|consensus 99.0 7.2E-09 1.6E-13 86.6 12.0 115 31-145 1309-1444(1549)
125 PRK13103 secA preprotein trans 99.0 4.9E-09 1.1E-13 86.2 10.9 121 31-154 432-592 (913)
126 KOG0920|consensus 99.0 1.2E-09 2.5E-14 90.0 6.8 110 45-155 412-546 (924)
127 KOG0924|consensus 99.0 1.3E-09 2.8E-14 86.7 6.1 108 44-152 561-696 (1042)
128 PF13307 Helicase_C_2: Helicas 98.9 8.9E-09 1.9E-13 70.2 8.8 111 38-151 2-148 (167)
129 COG4581 Superfamily II RNA hel 98.9 8.8E-09 1.9E-13 85.9 9.1 111 44-154 377-538 (1041)
130 TIGR01407 dinG_rel DnaQ family 98.9 3.5E-08 7.7E-13 82.6 12.4 106 45-151 673-812 (850)
131 KOG0949|consensus 98.9 5.8E-09 1.3E-13 85.7 6.8 77 73-149 965-1044(1330)
132 KOG1015|consensus 98.9 1.7E-08 3.7E-13 82.9 9.3 136 15-150 1109-1272(1567)
133 KOG1123|consensus 98.8 1.8E-07 3.9E-12 72.5 11.5 130 7-141 502-635 (776)
134 COG1198 PriA Primosomal protei 98.7 4.8E-08 1E-12 79.5 8.4 97 61-157 495-607 (730)
135 CHL00122 secA preprotein trans 98.7 2.7E-07 5.8E-12 76.0 12.3 82 31-113 407-491 (870)
136 KOG0926|consensus 98.7 5E-08 1.1E-12 79.0 7.8 80 73-153 607-704 (1172)
137 KOG1000|consensus 98.7 1.1E-07 2.4E-12 73.4 9.3 119 32-150 472-598 (689)
138 TIGR00348 hsdR type I site-spe 98.7 2.5E-07 5.3E-12 75.6 11.5 105 46-151 514-649 (667)
139 COG4096 HsdR Type I site-speci 98.7 1.6E-07 3.4E-12 76.4 9.9 94 46-141 426-526 (875)
140 KOG0386|consensus 98.6 8.9E-08 1.9E-12 78.9 7.2 121 30-150 708-833 (1157)
141 PRK08074 bifunctional ATP-depe 98.6 8.2E-07 1.8E-11 75.1 12.3 107 45-151 751-891 (928)
142 COG1199 DinG Rad3-related DNA 98.6 1.4E-06 3E-11 71.3 12.5 111 37-151 471-615 (654)
143 KOG4439|consensus 98.5 1.3E-06 2.9E-11 70.0 10.9 105 45-149 745-852 (901)
144 PF06862 DUF1253: Protein of u 98.5 9.2E-06 2E-10 62.9 13.5 141 15-155 258-417 (442)
145 PRK07246 bifunctional ATP-depe 98.5 4.4E-06 9.5E-11 69.8 12.5 105 45-152 646-782 (820)
146 PRK12902 secA preprotein trans 98.4 4.4E-06 9.6E-11 69.2 12.0 82 31-113 422-506 (939)
147 PRK11747 dinG ATP-dependent DN 98.4 5.9E-06 1.3E-10 68.0 12.7 105 45-152 533-673 (697)
148 KOG1002|consensus 98.4 2.8E-06 6.2E-11 66.0 9.4 116 31-146 619-740 (791)
149 COG1110 Reverse gyrase [DNA re 98.4 3E-06 6.5E-11 70.5 9.8 88 32-125 322-417 (1187)
150 KOG0925|consensus 98.3 6.7E-06 1.4E-10 63.8 9.3 118 31-153 234-387 (699)
151 TIGR00604 rad3 DNA repair heli 98.3 1.4E-05 3E-10 66.0 11.2 107 45-152 521-673 (705)
152 TIGR03117 cas_csf4 CRISPR-asso 98.3 2.4E-05 5.1E-10 63.5 11.9 115 35-152 460-615 (636)
153 smart00492 HELICc3 helicase su 98.2 4.6E-05 1E-09 50.5 11.2 93 59-151 4-136 (141)
154 COG4889 Predicted helicase [Ge 98.2 1.1E-06 2.4E-11 72.2 3.2 104 47-150 461-585 (1518)
155 smart00491 HELICc2 helicase su 98.1 8.8E-05 1.9E-09 49.2 10.6 94 58-151 3-137 (142)
156 COG0653 SecA Preprotein transl 98.0 8.8E-06 1.9E-10 67.0 5.1 120 31-152 412-544 (822)
157 PF13871 Helicase_C_4: Helicas 98.0 3.7E-05 8.1E-10 56.2 7.7 68 85-152 50-126 (278)
158 TIGR02562 cas3_yersinia CRISPR 98.0 9.9E-05 2.1E-09 62.4 10.6 91 49-142 759-881 (1110)
159 KOG1016|consensus 97.8 9.7E-05 2.1E-09 60.6 7.3 106 45-150 718-844 (1387)
160 PF02399 Herpes_ori_bp: Origin 97.4 0.003 6.5E-08 52.4 11.4 103 45-154 281-389 (824)
161 TIGR00596 rad1 DNA repair prot 97.4 0.00091 2E-08 56.0 8.6 39 30-68 268-317 (814)
162 PRK05580 primosome assembly pr 97.4 0.0038 8.2E-08 51.6 11.4 92 28-120 170-264 (679)
163 TIGR00595 priA primosomal prot 97.3 0.0028 6.1E-08 50.6 9.8 89 31-120 8-99 (505)
164 PRK14873 primosome assembly pr 97.3 0.0024 5.3E-08 52.5 9.0 76 31-106 171-250 (665)
165 PRK10917 ATP-dependent DNA hel 97.2 0.0059 1.3E-07 50.6 11.0 99 22-120 284-389 (681)
166 COG1198 PriA Primosomal protei 97.1 0.0016 3.6E-08 53.7 6.8 77 30-106 227-306 (730)
167 TIGR00643 recG ATP-dependent D 96.9 0.016 3.6E-07 47.6 10.5 97 24-120 260-363 (630)
168 COG1110 Reverse gyrase [DNA re 96.9 0.007 1.5E-07 51.4 8.1 73 33-105 112-190 (1187)
169 KOG1001|consensus 96.8 0.00018 3.8E-09 58.9 -1.3 102 47-148 540-643 (674)
170 TIGR00580 mfd transcription-re 96.8 0.019 4.2E-07 49.1 10.5 98 23-120 475-579 (926)
171 KOG0951|consensus 96.7 0.011 2.5E-07 51.2 8.4 111 44-158 1357-1499(1674)
172 KOG2340|consensus 96.7 0.012 2.6E-07 46.8 7.9 109 46-154 552-669 (698)
173 PRK14873 primosome assembly pr 96.6 0.014 3E-07 48.2 7.9 61 87-154 463-539 (665)
174 KOG0921|consensus 96.4 0.0044 9.5E-08 52.0 3.9 106 45-151 642-772 (1282)
175 PRK10689 transcription-repair 96.3 0.036 7.9E-07 48.5 9.4 98 23-120 624-728 (1147)
176 PRK14701 reverse gyrase; Provi 96.3 0.057 1.2E-06 48.9 10.4 82 24-105 98-187 (1638)
177 KOG0298|consensus 96.0 0.014 3.1E-07 50.5 5.2 100 45-149 1220-1320(1394)
178 KOG1133|consensus 95.9 0.37 8E-06 39.9 12.4 105 45-152 628-779 (821)
179 COG1200 RecG RecG-like helicas 95.7 0.13 2.8E-06 42.2 9.3 77 44-120 309-390 (677)
180 KOG0701|consensus 95.7 0.011 2.4E-07 52.6 3.6 93 48-140 294-398 (1606)
181 TIGR01054 rgy reverse gyrase. 95.3 0.2 4.4E-06 44.2 9.6 82 24-105 97-187 (1171)
182 COG1197 Mfd Transcription-repa 95.2 0.15 3.3E-06 44.2 8.4 89 31-119 626-721 (1139)
183 TIGR00614 recQ_fam ATP-depende 94.9 0.52 1.1E-05 37.5 10.4 82 22-105 28-110 (470)
184 KOG0339|consensus 94.8 0.25 5.4E-06 39.5 8.2 70 47-120 296-376 (731)
185 cd00268 DEADc DEAD-box helicas 94.7 0.67 1.5E-05 32.1 9.6 96 21-120 37-149 (203)
186 TIGR01389 recQ ATP-dependent D 94.6 0.69 1.5E-05 37.9 10.7 82 22-105 30-112 (591)
187 PF10593 Z1: Z1 domain; Inter 94.1 0.38 8.2E-06 34.8 7.4 91 57-152 94-192 (239)
188 KOG1513|consensus 94.0 0.072 1.6E-06 44.6 3.8 62 89-150 850-920 (1300)
189 COG0513 SrmB Superfamily II DN 93.9 0.48 1E-05 38.2 8.3 68 49-120 102-180 (513)
190 KOG0347|consensus 93.5 0.26 5.5E-06 39.8 5.9 52 49-104 266-321 (731)
191 PRK10590 ATP-dependent RNA hel 92.3 4.7 0.0001 31.9 11.9 69 48-120 77-155 (456)
192 KOG0338|consensus 92.2 0.95 2.1E-05 36.4 7.3 70 47-120 253-333 (691)
193 PRK11057 ATP-dependent DNA hel 91.9 3.1 6.8E-05 34.3 10.5 81 22-104 42-123 (607)
194 PRK11192 ATP-dependent RNA hel 91.7 1.2 2.7E-05 34.9 7.7 95 22-120 40-153 (434)
195 PLN03137 ATP-dependent DNA hel 91.5 3.7 8E-05 36.4 10.7 82 22-105 477-561 (1195)
196 PRK11634 ATP-dependent RNA hel 91.5 1.6 3.5E-05 36.1 8.4 95 22-120 45-155 (629)
197 PRK11776 ATP-dependent RNA hel 91.2 1.7 3.7E-05 34.4 8.1 95 22-120 43-153 (460)
198 PRK09401 reverse gyrase; Revie 91.2 3 6.5E-05 37.2 10.1 81 24-104 99-187 (1176)
199 cd01524 RHOD_Pyr_redox Member 91.0 0.6 1.3E-05 27.9 4.3 37 45-81 50-86 (90)
200 PRK04537 ATP-dependent RNA hel 90.7 1.2 2.6E-05 36.5 6.9 70 47-120 85-165 (572)
201 PF04364 DNA_pol3_chi: DNA pol 90.5 2 4.4E-05 28.2 6.7 80 34-124 15-96 (137)
202 cd01523 RHOD_Lact_B Member of 90.4 0.5 1.1E-05 28.8 3.6 37 45-81 60-96 (100)
203 PRK15483 type III restriction- 90.1 0.36 7.8E-06 41.6 3.5 46 96-141 501-546 (986)
204 smart00450 RHOD Rhodanese Homo 90.1 1.1 2.3E-05 26.7 4.9 39 43-81 53-92 (100)
205 PRK12898 secA preprotein trans 90.0 5.1 0.00011 33.5 9.9 86 26-118 122-213 (656)
206 TIGR00963 secA preprotein tran 89.1 3.7 7.9E-05 34.7 8.5 74 26-105 75-154 (745)
207 KOG0389|consensus 88.9 4.2 9.1E-05 34.5 8.5 67 37-109 439-512 (941)
208 KOG0330|consensus 88.9 4.1 8.9E-05 31.8 8.0 79 37-119 120-209 (476)
209 PRK04837 ATP-dependent RNA hel 88.9 2 4.4E-05 33.6 6.7 70 47-120 84-163 (423)
210 COG0610 Type I site-specific r 88.7 1.2 2.7E-05 38.7 5.8 56 95-151 592-651 (962)
211 PF00270 DEAD: DEAD/DEAH box h 88.4 5.5 0.00012 26.3 10.1 96 21-120 15-125 (169)
212 PRK13104 secA preprotein trans 88.3 3.8 8.2E-05 35.3 8.2 69 31-105 106-180 (896)
213 PRK05728 DNA polymerase III su 88.0 3.8 8.2E-05 27.1 6.7 80 30-122 11-93 (142)
214 cd01529 4RHOD_Repeats Member o 88.0 1.7 3.6E-05 26.3 4.7 37 44-80 54-91 (96)
215 PRK13766 Hef nuclease; Provisi 88.0 6.5 0.00014 33.4 9.6 93 22-120 31-137 (773)
216 PTZ00110 helicase; Provisional 87.3 3.6 7.8E-05 33.5 7.4 70 47-120 204-283 (545)
217 COG1205 Distinct helicase fami 87.3 7.1 0.00015 33.7 9.3 126 21-150 86-238 (851)
218 TIGR00631 uvrb excinuclease AB 87.0 16 0.00034 30.7 10.9 109 24-134 34-173 (655)
219 TIGR03817 DECH_helic helicase/ 86.4 8.4 0.00018 32.7 9.2 78 22-104 53-137 (742)
220 KOG0329|consensus 86.4 2.2 4.8E-05 31.4 5.1 69 48-120 112-191 (387)
221 cd01518 RHOD_YceA Member of th 86.1 2.2 4.8E-05 26.0 4.5 38 44-81 59-97 (101)
222 PRK01297 ATP-dependent RNA hel 85.7 4.8 0.0001 32.1 7.2 71 47-120 163-243 (475)
223 cd01533 4RHOD_Repeat_2 Member 85.6 2.7 5.8E-05 26.0 4.8 37 45-81 65-103 (109)
224 cd01534 4RHOD_Repeat_3 Member 85.5 1.7 3.6E-05 26.3 3.7 36 45-80 55-90 (95)
225 PRK09200 preprotein translocas 85.5 7.5 0.00016 33.3 8.4 75 24-104 95-176 (790)
226 COG4098 comFA Superfamily II D 85.1 16 0.00034 28.3 9.2 122 18-153 115-243 (441)
227 TIGR00696 wecB_tagA_cpsF bacte 84.7 11 0.00023 26.0 8.7 67 35-101 35-105 (177)
228 COG0514 RecQ Superfamily II DN 84.4 5 0.00011 33.0 6.8 81 21-104 33-115 (590)
229 PF03808 Glyco_tran_WecB: Glyc 84.2 11 0.00023 25.7 8.3 58 45-102 47-107 (172)
230 cd01521 RHOD_PspE2 Member of t 84.1 2.4 5.2E-05 26.4 4.0 36 45-80 63-100 (110)
231 cd01527 RHOD_YgaP Member of th 84.0 2.8 6E-05 25.4 4.3 36 45-80 53-89 (99)
232 KOG0331|consensus 84.0 4.8 0.0001 32.6 6.4 69 47-119 166-244 (519)
233 PRK12899 secA preprotein trans 83.9 13 0.00029 32.4 9.2 75 25-105 112-192 (970)
234 KOG0343|consensus 83.9 3.3 7.1E-05 33.8 5.4 54 46-104 141-198 (758)
235 cd01526 RHOD_ThiF Member of th 83.8 1.6 3.4E-05 27.8 3.2 36 45-80 71-108 (122)
236 KOG0350|consensus 83.5 4.4 9.4E-05 32.7 5.9 102 20-121 183-302 (620)
237 cd01532 4RHOD_Repeat_1 Member 83.1 2.9 6.4E-05 25.0 4.1 37 45-81 49-88 (92)
238 cd06533 Glyco_transf_WecG_TagA 83.0 12 0.00026 25.4 8.4 58 45-102 45-105 (171)
239 COG3587 Restriction endonuclea 83.0 1.3 2.8E-05 37.7 3.0 45 97-141 484-528 (985)
240 cd01449 TST_Repeat_2 Thiosulfa 82.6 4.2 9.1E-05 25.4 4.8 36 45-80 77-113 (118)
241 KOG0334|consensus 82.5 5.2 0.00011 34.8 6.3 54 47-104 438-496 (997)
242 PRK12904 preprotein translocas 82.3 9.4 0.0002 32.8 7.8 70 30-105 104-179 (830)
243 PRK02362 ski2-like helicase; P 82.0 10 0.00023 32.1 8.1 77 21-104 40-121 (737)
244 KOG1132|consensus 81.9 34 0.00073 29.7 10.8 80 45-125 560-656 (945)
245 cd00158 RHOD Rhodanese Homolog 81.8 4.2 9.1E-05 23.6 4.4 38 44-81 48-86 (89)
246 cd01444 GlpE_ST GlpE sulfurtra 81.1 3.4 7.4E-05 24.7 3.8 36 45-80 55-91 (96)
247 PRK10287 thiosulfate:cyanide s 81.0 7.4 0.00016 24.2 5.3 36 45-80 59-94 (104)
248 PRK05320 rhodanese superfamily 80.6 4.7 0.0001 29.5 5.0 37 45-81 174-211 (257)
249 cd01528 RHOD_2 Member of the R 80.5 4 8.6E-05 24.8 4.0 37 45-81 57-94 (101)
250 PF11496 HDA2-3: Class II hist 80.1 20 0.00044 26.9 8.2 123 29-151 93-243 (297)
251 cd01525 RHOD_Kc Member of the 80.1 4.9 0.00011 24.5 4.4 36 46-81 65-101 (105)
252 KOG0383|consensus 80.1 1.3 2.8E-05 36.9 2.1 78 31-109 614-696 (696)
253 PF01751 Toprim: Toprim domain 79.8 3.6 7.8E-05 25.2 3.6 64 49-112 1-76 (100)
254 cd01447 Polysulfide_ST Polysul 79.6 2.4 5.3E-05 25.7 2.8 36 45-80 60-96 (103)
255 cd01519 RHOD_HSP67B2 Member of 79.4 3.2 7E-05 25.3 3.4 36 45-80 65-101 (106)
256 COG1111 MPH1 ERCC4-like helica 79.3 13 0.00028 30.1 7.1 93 22-120 31-137 (542)
257 TIGR02981 phageshock_pspE phag 79.1 10 0.00022 23.4 5.5 36 45-80 57-92 (101)
258 cd01448 TST_Repeat_1 Thiosulfa 78.6 5.5 0.00012 25.1 4.3 36 45-80 78-115 (122)
259 PRK09751 putative ATP-dependen 78.4 9.7 0.00021 35.0 7.0 70 47-120 38-130 (1490)
260 COG1168 MalY Bifunctional PLP- 78.3 13 0.00029 28.8 6.8 108 35-143 148-268 (388)
261 cd01520 RHOD_YbbB Member of th 78.3 4.4 9.6E-05 26.0 3.9 37 45-81 85-122 (128)
262 cd00046 DEXDc DEAD-like helica 78.0 14 0.0003 22.9 8.3 77 31-111 11-95 (144)
263 PRK13103 secA preprotein trans 75.9 23 0.00049 30.9 8.1 71 30-106 105-181 (913)
264 KOG0345|consensus 75.8 33 0.00072 27.7 8.4 70 48-120 81-163 (567)
265 KOG1180|consensus 75.0 29 0.00063 28.7 8.1 75 46-123 115-194 (678)
266 COG2519 GCD14 tRNA(1-methylade 72.7 11 0.00024 27.6 4.9 51 19-71 163-213 (256)
267 PLN02160 thiosulfate sulfurtra 72.2 7.9 0.00017 25.3 3.9 36 45-80 80-116 (136)
268 KOG0340|consensus 72.1 17 0.00037 28.2 6.0 52 48-104 77-133 (442)
269 cd01535 4RHOD_Repeat_4 Member 72.0 19 0.00042 23.7 5.8 36 45-80 48-84 (145)
270 PRK01415 hypothetical protein; 71.8 10 0.00022 27.7 4.6 37 44-80 169-206 (247)
271 PRK00254 ski2-like helicase; P 71.6 27 0.00058 29.6 7.7 77 21-104 40-122 (720)
272 KOG0342|consensus 71.4 14 0.0003 29.8 5.5 53 48-104 156-213 (543)
273 cd01522 RHOD_1 Member of the R 71.1 7.7 0.00017 24.4 3.6 37 45-81 63-100 (117)
274 KOG0335|consensus 70.8 14 0.0003 29.7 5.4 54 47-104 153-210 (482)
275 PRK05298 excinuclease ABC subu 70.2 65 0.0014 27.1 12.2 103 31-134 43-176 (652)
276 COG1204 Superfamily II helicas 69.9 26 0.00055 30.1 7.2 77 21-104 48-130 (766)
277 PF02142 MGS: MGS-like domain 69.9 4.9 0.00011 24.4 2.4 43 63-105 23-69 (95)
278 PRK00162 glpE thiosulfate sulf 68.2 11 0.00024 23.2 3.8 36 45-80 57-93 (108)
279 PRK11784 tRNA 2-selenouridine 66.8 40 0.00087 25.9 7.1 49 45-94 87-136 (345)
280 smart00493 TOPRIM topoisomeras 66.6 21 0.00046 20.2 6.6 60 49-110 2-61 (76)
281 PLN00206 DEAD-box ATP-dependen 66.5 31 0.00068 28.0 6.9 71 46-120 196-276 (518)
282 PRK00142 putative rhodanese-re 66.4 14 0.00031 27.9 4.6 38 44-81 169-207 (314)
283 KOG0385|consensus 66.2 68 0.0015 27.8 8.6 58 44-104 215-275 (971)
284 PRK13767 ATP-dependent helicas 65.8 37 0.00081 29.6 7.5 79 22-104 49-154 (876)
285 TIGR03714 secA2 accessory Sec 65.7 62 0.0014 27.8 8.5 75 25-105 88-173 (762)
286 PRK06646 DNA polymerase III su 65.0 19 0.00041 24.3 4.5 55 24-79 6-62 (154)
287 PRK09860 putative alcohol dehy 64.7 65 0.0014 25.1 8.5 71 32-102 17-94 (383)
288 PRK09189 uroporphyrinogen-III 63.9 43 0.00093 23.9 6.6 72 32-104 102-178 (240)
289 PRK03692 putative UDP-N-acetyl 63.9 54 0.0012 23.9 8.7 56 46-101 105-162 (243)
290 COG0607 PspE Rhodanese-related 63.8 8.3 0.00018 23.5 2.6 36 45-80 60-96 (110)
291 TIGR03865 PQQ_CXXCW PQQ-depend 63.3 25 0.00055 23.7 5.0 36 45-80 115-152 (162)
292 PF04273 DUF442: Putative phos 63.1 35 0.00077 21.5 5.9 49 18-67 56-107 (110)
293 cd01446 DSP_MapKP N-terminal r 62.7 27 0.00059 22.3 5.0 37 45-81 74-122 (132)
294 PF12683 DUF3798: Protein of u 62.4 14 0.0003 27.4 3.7 104 19-128 33-144 (275)
295 COG0300 DltE Short-chain dehyd 60.9 65 0.0014 23.8 8.8 66 37-103 22-91 (265)
296 PRK01172 ski2-like helicase; P 60.9 73 0.0016 26.8 8.2 76 22-104 39-119 (674)
297 PF11823 DUF3343: Protein of u 59.9 31 0.00067 19.7 4.7 29 47-75 2-30 (73)
298 smart00115 CASc Caspase, inter 59.7 64 0.0014 23.3 11.2 84 45-134 7-106 (241)
299 COG0426 FpaA Uncharacterized f 58.6 88 0.0019 24.6 8.6 73 37-112 237-314 (388)
300 KOG0351|consensus 58.5 39 0.00084 29.8 6.3 57 48-104 306-364 (941)
301 COG0074 SucD Succinyl-CoA synt 58.1 77 0.0017 23.8 8.6 79 33-114 53-131 (293)
302 cd01080 NAD_bind_m-THF_DH_Cycl 58.0 57 0.0012 22.2 8.6 76 45-128 43-122 (168)
303 smart00487 DEXDc DEAD-like hel 57.9 52 0.0011 21.7 9.1 79 21-103 25-112 (201)
304 PRK06827 phosphoribosylpyropho 57.6 70 0.0015 25.0 7.1 59 48-107 266-330 (382)
305 PTZ00424 helicase 45; Provisio 57.2 88 0.0019 24.1 8.1 93 24-120 69-176 (401)
306 cd01445 TST_Repeats Thiosulfat 56.7 31 0.00068 22.5 4.5 45 36-80 82-133 (138)
307 PF01113 DapB_N: Dihydrodipico 56.7 49 0.0011 21.1 6.5 56 47-104 68-123 (124)
308 cd01530 Cdc25 Cdc25 phosphatas 56.4 20 0.00043 22.8 3.4 37 45-81 67-117 (121)
309 cd00032 CASc Caspase, interleu 56.3 73 0.0016 22.9 10.1 85 45-135 8-108 (243)
310 COG1922 WecG Teichoic acid bio 56.0 79 0.0017 23.2 8.8 69 34-102 94-167 (253)
311 KOG1131|consensus 55.9 1.2E+02 0.0026 25.2 10.3 80 46-125 530-623 (755)
312 PF10087 DUF2325: Uncharacteri 55.9 44 0.00095 20.2 5.2 60 49-110 2-63 (97)
313 PF00581 Rhodanese: Rhodanese- 54.9 18 0.00038 21.9 3.0 36 45-80 66-107 (113)
314 smart00851 MGS MGS-like domain 54.4 30 0.00065 20.5 3.8 42 63-105 23-64 (90)
315 KOG1255|consensus 53.8 87 0.0019 23.0 8.2 69 36-104 86-154 (329)
316 PF13167 GTP-bdg_N: GTP-bindin 53.6 50 0.0011 20.3 5.5 39 55-93 42-80 (95)
317 PRK13107 preprotein translocas 51.6 1.7E+02 0.0037 25.9 8.8 69 30-104 105-179 (908)
318 PRK01189 V-type ATP synthase s 51.6 45 0.00097 20.8 4.3 22 86-107 35-56 (104)
319 TIGR02621 cas3_GSU0051 CRISPR- 51.4 47 0.001 28.9 5.6 73 27-103 38-142 (844)
320 TIGR03167 tRNA_sel_U_synt tRNA 50.3 1.1E+02 0.0024 23.2 8.1 46 47-93 75-121 (311)
321 KOG0346|consensus 49.9 36 0.00077 27.3 4.3 62 46-111 93-165 (569)
322 PRK11493 sseA 3-mercaptopyruva 49.9 43 0.00094 24.7 4.8 36 45-80 230-266 (281)
323 PF02602 HEM4: Uroporphyrinoge 49.7 50 0.0011 23.2 4.9 72 32-104 102-176 (231)
324 PRK05597 molybdopterin biosynt 48.7 34 0.00075 26.3 4.2 36 45-80 313-349 (355)
325 KOG0348|consensus 48.5 46 0.001 27.5 4.8 68 48-119 213-292 (708)
326 COG2927 HolC DNA polymerase II 48.1 68 0.0015 21.4 4.9 44 36-79 17-62 (144)
327 PRK05600 thiamine biosynthesis 48.0 48 0.001 25.8 4.9 37 45-81 331-369 (370)
328 cd03031 GRX_GRX_like Glutaredo 47.2 84 0.0018 20.9 7.8 45 48-92 1-52 (147)
329 cd08190 HOT Hydroxyacid-oxoaci 47.1 1.4E+02 0.0031 23.5 9.1 71 32-102 9-86 (414)
330 TIGR00096 probable S-adenosylm 46.7 77 0.0017 23.6 5.6 65 49-115 27-91 (276)
331 PF14617 CMS1: U3-containing 9 46.1 79 0.0017 23.2 5.5 69 48-119 128-206 (252)
332 COG0478 RIO-like serine/threon 45.3 20 0.00044 26.8 2.4 47 56-116 201-250 (304)
333 COG0135 TrpF Phosphoribosylant 45.2 1.1E+02 0.0024 21.8 9.2 71 20-92 26-97 (208)
334 PF08704 GCD14: tRNA methyltra 45.0 29 0.00063 25.3 3.1 52 19-71 113-164 (247)
335 cd08176 LPO Lactadehyde:propan 44.9 1.4E+02 0.0031 23.0 8.5 71 32-102 14-91 (377)
336 KOG0384|consensus 44.8 98 0.0021 28.3 6.5 68 36-105 409-484 (1373)
337 cd01423 MGS_CPS_I_III Methylgl 44.5 55 0.0012 20.5 4.1 43 64-106 37-81 (116)
338 PRK07411 hypothetical protein; 44.4 51 0.0011 25.8 4.6 36 45-80 341-376 (390)
339 cd01422 MGS Methylglyoxal synt 43.8 62 0.0013 20.4 4.2 40 65-105 39-79 (115)
340 cd08186 Fe-ADH8 Iron-containin 43.6 1.5E+02 0.0033 23.0 9.1 43 60-102 45-90 (383)
341 PRK06739 pyruvate kinase; Vali 43.6 1.1E+02 0.0025 23.6 6.2 32 82-113 250-281 (352)
342 PRK07878 molybdopterin biosynt 43.4 40 0.00087 26.3 3.9 36 45-80 342-378 (392)
343 PRK00553 ribose-phosphate pyro 43.3 1.1E+02 0.0023 23.5 6.0 62 46-107 218-285 (332)
344 PF02863 Arg_repressor_C: Argi 42.9 35 0.00076 19.5 2.7 42 27-68 18-69 (70)
345 TIGR01866 cas_Csn2 CRISPR-asso 42.8 92 0.002 22.3 5.3 47 33-79 149-200 (216)
346 PF00465 Fe-ADH: Iron-containi 42.4 1.6E+02 0.0034 22.7 8.3 71 31-103 8-85 (366)
347 cd08172 GlyDH-like1 Glycerol d 42.3 1.5E+02 0.0033 22.6 8.3 55 49-104 53-109 (347)
348 PLN02723 3-mercaptopyruvate su 42.0 73 0.0016 24.1 5.0 36 45-80 268-304 (320)
349 PRK08762 molybdopterin biosynt 42.0 46 0.00099 25.8 4.0 36 45-80 56-92 (376)
350 PRK10310 PTS system galactitol 41.4 80 0.0017 19.1 6.5 63 48-117 4-72 (94)
351 cd08191 HHD 6-hydroxyhexanoate 41.1 1.7E+02 0.0037 22.7 9.1 71 32-103 9-86 (386)
352 PRK12906 secA preprotein trans 41.0 1.6E+02 0.0034 25.7 7.1 63 28-90 101-169 (796)
353 COG1454 EutG Alcohol dehydroge 40.9 1.8E+02 0.0038 22.9 8.2 72 31-102 14-92 (377)
354 PRK12326 preprotein translocas 40.2 1.6E+02 0.0034 25.5 6.9 63 28-90 99-167 (764)
355 cd08193 HVD 5-hydroxyvalerate 40.1 1.7E+02 0.0038 22.6 8.8 72 32-103 12-90 (376)
356 TIGR00036 dapB dihydrodipicoli 40.1 1.5E+02 0.0032 21.8 7.9 58 47-104 69-126 (266)
357 KOG0341|consensus 40.0 62 0.0014 25.6 4.3 55 46-104 246-310 (610)
358 cd08185 Fe-ADH1 Iron-containin 38.5 1.9E+02 0.004 22.4 9.0 70 32-102 12-89 (380)
359 cd08182 HEPD Hydroxyethylphosp 38.4 1.8E+02 0.004 22.3 9.1 71 32-102 9-83 (367)
360 PRK11493 sseA 3-mercaptopyruva 38.3 50 0.0011 24.4 3.6 46 35-80 73-123 (281)
361 PF11116 DUF2624: Protein of u 38.1 82 0.0018 19.0 3.7 34 55-94 32-65 (85)
362 COG1054 Predicted sulfurtransf 37.5 43 0.00094 25.2 3.0 41 40-80 166-207 (308)
363 cd08194 Fe-ADH6 Iron-containin 37.0 2E+02 0.0043 22.3 9.1 71 32-102 9-86 (375)
364 cd06578 HemD Uroporphyrinogen- 36.5 1.5E+02 0.0032 20.6 7.0 72 32-104 106-181 (239)
365 PRK08811 uroporphyrinogen-III 36.5 1.6E+02 0.0034 21.6 5.9 69 34-103 125-197 (266)
366 PHA02558 uvsW UvsW helicase; P 36.3 2.3E+02 0.005 22.9 8.1 47 23-69 132-181 (501)
367 PF13245 AAA_19: Part of AAA d 36.2 77 0.0017 18.3 3.5 37 30-66 20-62 (76)
368 COG4064 MtrG Tetrahydromethano 35.7 24 0.00052 20.3 1.2 14 127-140 35-49 (75)
369 cd05402 NT_PAP_TUTase Nucleoti 35.6 1.1E+02 0.0023 18.8 7.1 42 100-141 24-66 (114)
370 PF10657 RC-P840_PscD: Photosy 35.5 63 0.0014 20.8 3.1 49 74-122 52-106 (144)
371 PF13685 Fe-ADH_2: Iron-contai 35.4 1.8E+02 0.0039 21.3 6.9 25 92-116 96-120 (250)
372 PRK02269 ribose-phosphate pyro 34.7 2E+02 0.0042 21.9 6.3 59 45-107 216-280 (320)
373 PRK09281 F0F1 ATP synthase sub 34.7 2.6E+02 0.0056 22.9 9.3 73 31-103 173-260 (502)
374 cd02017 TPP_E1_EcPDC_like Thia 34.5 2.3E+02 0.005 22.3 9.0 61 80-140 290-353 (386)
375 cd01531 Acr2p Eukaryotic arsen 34.2 75 0.0016 19.5 3.5 37 45-81 61-107 (113)
376 cd01452 VWA_26S_proteasome_sub 33.7 1.6E+02 0.0034 20.6 5.2 46 47-93 108-158 (187)
377 PF07652 Flavi_DEAD: Flaviviru 33.7 1.1E+02 0.0024 20.6 4.2 39 31-69 15-56 (148)
378 cd08189 Fe-ADH5 Iron-containin 33.4 2.3E+02 0.0049 21.9 9.2 71 32-102 12-89 (374)
379 COG2217 ZntA Cation transport 33.1 2.2E+02 0.0047 24.5 6.7 82 48-134 556-654 (713)
380 cd01027 TOPRIM_RNase_M5_like T 33.0 1.1E+02 0.0023 18.0 5.9 58 49-111 3-60 (81)
381 PRK09280 F0F1 ATP synthase sub 32.7 2.7E+02 0.0059 22.6 8.5 73 31-103 155-244 (463)
382 PRK15454 ethanol dehydrogenase 32.3 2.5E+02 0.0054 22.0 8.4 73 31-103 34-113 (395)
383 PF09711 Cas_Csn2: CRISPR-asso 32.2 1.8E+02 0.0039 20.4 6.5 38 42-79 126-168 (188)
384 PF00456 Transketolase_N: Tran 32.1 1.9E+02 0.0041 22.2 5.8 79 59-138 195-275 (332)
385 PF10740 DUF2529: Protein of u 32.1 93 0.002 21.4 3.7 33 45-77 81-115 (172)
386 PRK09375 quinolinate synthetas 31.6 1.2E+02 0.0026 23.2 4.6 50 43-92 153-205 (319)
387 KOG2792|consensus 31.5 2.2E+02 0.0048 21.2 6.2 101 31-134 159-271 (280)
388 KOG0353|consensus 31.2 2.2E+02 0.0047 22.6 5.9 60 45-104 133-194 (695)
389 KOG1257|consensus 31.1 1.9E+02 0.0042 23.9 5.8 99 49-150 368-475 (582)
390 cd00532 MGS-like MGS-like doma 30.7 99 0.0021 19.2 3.6 42 63-105 35-77 (112)
391 PF01488 Shikimate_DH: Shikima 30.6 1.5E+02 0.0033 19.0 6.8 22 45-66 35-56 (135)
392 COG1105 FruK Fructose-1-phosph 30.2 2.5E+02 0.0054 21.4 7.7 59 55-113 112-178 (310)
393 cd03028 GRX_PICOT_like Glutare 30.1 1.2E+02 0.0027 17.9 7.6 43 45-87 6-54 (90)
394 PRK05234 mgsA methylglyoxal sy 30.0 1.6E+02 0.0034 19.5 4.6 40 64-104 43-83 (142)
395 PRK06936 type III secretion sy 30.0 3E+02 0.0064 22.2 8.1 73 31-104 173-259 (439)
396 PHA03371 circ protein; Provisi 29.6 52 0.0011 23.7 2.3 25 126-150 64-88 (240)
397 PLN02461 Probable pyruvate kin 29.3 2.1E+02 0.0046 23.5 5.9 32 82-113 278-309 (511)
398 COG0240 GpsA Glycerol-3-phosph 29.2 2.3E+02 0.005 21.8 5.7 70 32-106 111-180 (329)
399 PF13380 CoA_binding_2: CoA bi 29.2 1.5E+02 0.0033 18.6 5.7 49 48-99 57-105 (116)
400 PF02679 ComA: (2R)-phospho-3- 29.1 2.3E+02 0.0051 20.7 6.5 65 37-101 56-131 (244)
401 PRK07594 type III secretion sy 28.8 3.1E+02 0.0067 22.0 9.5 74 31-104 166-252 (433)
402 PHA02653 RNA helicase NPH-II; 28.7 3.7E+02 0.0081 23.0 9.1 69 46-120 222-297 (675)
403 cd08551 Fe-ADH iron-containing 28.7 2.7E+02 0.0059 21.4 9.3 20 83-102 67-86 (370)
404 cd00188 TOPRIM Topoisomerase-p 28.4 1.1E+02 0.0024 16.7 6.2 60 49-110 2-61 (83)
405 PF07429 Glyco_transf_56: 4-al 28.2 1.7E+02 0.0037 22.8 4.9 85 55-139 144-239 (360)
406 PRK04196 V-type ATP synthase s 28.1 3.3E+02 0.007 22.1 8.9 73 31-103 154-246 (460)
407 CHL00059 atpA ATP synthase CF1 28.0 3.4E+02 0.0073 22.2 8.5 73 31-103 152-239 (485)
408 COG0353 RecR Recombinational D 28.0 2.2E+02 0.0048 20.1 6.7 64 45-109 77-149 (198)
409 PF14824 Sirohm_synth_M: Siroh 28.0 64 0.0014 15.3 1.7 11 94-104 2-12 (30)
410 PRK09548 PTS system ascorbate- 27.6 3.8E+02 0.0081 22.6 8.4 81 45-132 505-590 (602)
411 KOG4284|consensus 27.4 2E+02 0.0044 24.7 5.5 54 46-104 93-151 (980)
412 COG2241 CobL Precorrin-6B meth 27.3 1.3E+02 0.0028 21.5 3.9 42 29-72 125-166 (210)
413 COG1697 DNA topoisomerase VI, 27.0 3E+02 0.0066 21.4 6.9 65 48-112 184-250 (356)
414 PRK07199 phosphoribosylpyropho 26.9 2.8E+02 0.006 20.9 7.1 58 46-107 211-274 (301)
415 KOG2380|consensus 26.8 3.2E+02 0.0069 21.5 6.9 87 32-120 96-187 (480)
416 PTZ00066 pyruvate kinase; Prov 26.7 2.2E+02 0.0049 23.4 5.6 31 83-113 295-325 (513)
417 cd08187 BDH Butanol dehydrogen 26.5 3.1E+02 0.0067 21.3 9.2 72 31-103 14-93 (382)
418 PF00697 PRAI: N-(5'phosphorib 26.5 2.3E+02 0.0049 19.7 6.3 51 31-83 34-84 (197)
419 cd05796 Ribosomal_P0_like Ribo 26.1 2.1E+02 0.0046 19.3 6.2 59 73-140 80-142 (163)
420 TIGR01244 conserved hypothetic 25.9 1.9E+02 0.0041 18.7 4.6 49 18-67 56-107 (135)
421 PF03853 YjeF_N: YjeF-related 25.5 2.2E+02 0.0047 19.2 8.5 94 44-137 23-130 (169)
422 COG4026 Uncharacterized protei 24.6 2.6E+02 0.0056 20.3 5.0 61 49-111 9-73 (290)
423 cd03027 GRX_DEP Glutaredoxin ( 24.5 1.4E+02 0.003 16.6 7.3 52 48-99 2-54 (73)
424 KOG0386|consensus 24.5 1.9E+02 0.0041 26.0 5.0 59 44-104 442-501 (1157)
425 TIGR00282 metallophosphoestera 24.5 2.6E+02 0.0056 20.7 5.2 46 58-105 132-178 (266)
426 PRK02458 ribose-phosphate pyro 24.4 3.2E+02 0.007 20.8 6.5 59 45-107 217-281 (323)
427 KOG0352|consensus 24.3 2.1E+02 0.0046 23.2 4.9 83 19-104 35-121 (641)
428 cd03418 GRX_GRXb_1_3_like Glut 24.3 1.4E+02 0.003 16.5 7.7 44 49-92 2-46 (75)
429 cd01294 DHOase Dihydroorotase 24.3 98 0.0021 23.4 3.2 27 81-107 219-245 (335)
430 PF00106 adh_short: short chai 24.3 2.1E+02 0.0045 18.5 8.9 57 47-103 26-87 (167)
431 PF02603 Hpr_kinase_N: HPr Ser 24.3 57 0.0012 21.0 1.7 38 33-72 70-107 (127)
432 KOG3191|consensus 24.2 2.7E+02 0.0058 19.7 6.8 53 71-125 67-120 (209)
433 cd01443 Cdc25_Acr2p Cdc25 enzy 24.2 1.8E+02 0.0039 17.8 5.3 35 46-80 66-108 (113)
434 PRK01221 putative deoxyhypusin 24.0 2.3E+02 0.005 21.6 4.9 42 64-105 49-91 (312)
435 cd08192 Fe-ADH7 Iron-containin 23.9 3.4E+02 0.0074 20.9 8.5 71 32-102 10-87 (370)
436 cd01132 F1_ATPase_alpha F1 ATP 23.8 3.1E+02 0.0068 20.5 9.1 72 31-102 80-166 (274)
437 TIGR03498 FliI_clade3 flagella 23.8 3.8E+02 0.0082 21.4 9.1 74 31-104 151-237 (418)
438 PRK01026 tetrahydromethanopter 23.5 42 0.00092 19.7 0.8 14 126-139 34-48 (77)
439 TIGR03849 arch_ComA phosphosul 23.4 3E+02 0.0065 20.1 6.8 65 36-100 42-117 (237)
440 TIGR01040 V-ATPase_V1_B V-type 23.3 4.1E+02 0.0089 21.6 8.0 19 61-79 236-255 (466)
441 TIGR00936 ahcY adenosylhomocys 23.2 3.9E+02 0.0084 21.3 7.3 70 31-101 42-111 (406)
442 PRK08972 fliI flagellum-specif 23.1 4.1E+02 0.0088 21.5 9.8 73 31-104 173-259 (444)
443 PLN02522 ATP citrate (pro-S)-l 23.1 4.7E+02 0.01 22.1 7.8 70 36-106 68-139 (608)
444 cd05563 PTS_IIB_ascorbate PTS_ 22.6 1.7E+02 0.0037 16.9 8.0 78 48-135 1-83 (86)
445 PF07517 SecA_DEAD: SecA DEAD- 22.5 3.3E+02 0.0071 20.2 7.8 67 24-90 94-166 (266)
446 PRK05928 hemD uroporphyrinogen 22.5 2.8E+02 0.0061 19.4 6.7 71 33-104 110-185 (249)
447 PLN02363 phosphoribosylanthran 22.4 3.2E+02 0.007 20.1 6.1 51 33-85 84-137 (256)
448 COG0329 DapA Dihydrodipicolina 22.3 3.4E+02 0.0074 20.3 8.6 44 60-103 28-80 (299)
449 KOG0952|consensus 22.3 2.9E+02 0.0064 25.1 5.7 51 47-104 165-219 (1230)
450 PF03599 CdhD: CO dehydrogenas 22.3 4E+02 0.0086 21.1 7.8 67 34-101 108-175 (386)
451 cd08170 GlyDH Glycerol dehydro 22.2 3.6E+02 0.0078 20.5 9.2 36 55-90 62-97 (351)
452 COG3453 Uncharacterized protei 22.1 2.4E+02 0.0051 18.4 5.6 59 18-85 57-118 (130)
453 cd08181 PPD-like 1,3-propanedi 22.0 3.7E+02 0.0081 20.6 9.0 70 32-102 12-89 (357)
454 PRK08576 hypothetical protein; 21.8 3.3E+02 0.0071 21.9 5.6 53 50-102 3-60 (438)
455 COG0313 Predicted methyltransf 21.6 3.4E+02 0.0073 20.3 5.3 63 50-114 33-95 (275)
456 PRK10624 L-1,2-propanediol oxi 21.6 3.9E+02 0.0085 20.7 8.5 73 31-103 15-94 (382)
457 TIGR03249 KdgD 5-dehydro-4-deo 21.6 3.5E+02 0.0075 20.1 6.6 45 59-103 28-81 (296)
458 cd08188 Fe-ADH4 Iron-containin 21.5 3.9E+02 0.0085 20.7 9.0 71 32-102 14-91 (377)
459 CHL00122 secA preprotein trans 21.5 4.9E+02 0.011 23.1 6.8 63 28-90 97-165 (870)
460 cd01424 MGS_CPS_II Methylglyox 21.4 2.1E+02 0.0045 17.5 4.2 41 63-105 36-76 (110)
461 PF13344 Hydrolase_6: Haloacid 21.3 2.1E+02 0.0045 17.4 3.8 41 31-73 17-58 (101)
462 cd00952 CHBPH_aldolase Trans-o 21.3 3.6E+02 0.0079 20.2 6.9 24 80-103 58-84 (309)
463 COG4359 Uncharacterized conser 21.1 1.6E+02 0.0034 20.9 3.3 25 60-84 79-103 (220)
464 PRK12902 secA preprotein trans 21.1 5.9E+02 0.013 22.9 7.2 63 27-89 105-173 (939)
465 PF02698 DUF218: DUF218 domain 20.9 2.5E+02 0.0054 18.2 6.5 40 32-72 24-69 (155)
466 PF09419 PGP_phosphatase: Mito 20.8 2.9E+02 0.0063 18.9 6.6 49 43-95 74-130 (168)
467 PRK09629 bifunctional thiosulf 20.7 2.3E+02 0.0049 23.8 4.8 44 37-80 211-258 (610)
468 PRK04923 ribose-phosphate pyro 20.7 3.9E+02 0.0085 20.4 6.1 59 45-107 216-280 (319)
469 COG1201 Lhr Lhr-like helicases 20.6 2.2E+02 0.0048 24.9 4.7 80 21-104 38-131 (814)
470 PF05496 RuvB_N: Holliday junc 20.5 3.5E+02 0.0076 19.7 6.0 99 19-118 49-153 (233)
471 TIGR01285 nifN nitrogenase mol 20.5 4.4E+02 0.0096 20.9 6.9 71 44-115 309-395 (432)
472 PF09413 DUF2007: Domain of un 20.5 1.7E+02 0.0036 16.0 3.6 30 49-78 2-31 (67)
473 cd07025 Peptidase_S66 LD-Carbo 20.4 3.7E+02 0.0079 19.9 5.9 16 88-103 54-69 (282)
474 PF00072 Response_reg: Respons 20.3 2E+02 0.0044 16.9 6.7 69 32-104 9-79 (112)
475 COG1131 CcmA ABC-type multidru 20.3 1.9E+02 0.0042 21.5 4.0 46 72-119 156-208 (293)
476 COG0365 Acs Acyl-coenzyme A sy 20.1 5.1E+02 0.011 21.4 8.2 64 45-111 64-127 (528)
477 TIGR01680 Veg_Stor_Prot vegeta 20.1 3.5E+02 0.0076 20.3 5.1 36 58-94 149-184 (275)
No 1
>KOG0328|consensus
Probab=100.00 E-value=1.3e-32 Score=195.04 Aligned_cols=144 Identities=31% Similarity=0.531 Sum_probs=137.1
Q ss_pred hhhhccceeeeecCCCCChHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhc
Q psy576 15 RVKSNLARMYRETEGAGSPVQAQDETILLGIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRT 94 (159)
Q Consensus 15 ~~~~~i~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 94 (159)
...++|.++|+.++.++.|+..|..+-....-.+++|||+|+..++.+.+.+++.++.+...||+|+.++|.+++..|+.
T Consensus 235 ltlEgIKqf~v~ve~EewKfdtLcdLYd~LtItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRs 314 (400)
T KOG0328|consen 235 LTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRS 314 (400)
T ss_pred CchhhhhhheeeechhhhhHhHHHHHhhhhehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhc
Confidence 44578999999999999999999999998888899999999999999999999999999999999999999999999999
Q ss_pred CCeeEEEEeCCcccccccCCCcEEEEecCCCCHHHHHHHHhhccCCCCcceEEEEecCCCcccc
Q psy576 95 GRIWILITTELLGRGIDFRTVRLVVNYDFPSSAISYIHRIGRAGRGGREGKAVTFFTKQDAPLL 158 (159)
Q Consensus 95 ~~~~vlv~t~~~~~g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~g~~~~~~~~~~~~~~ 158 (159)
|+.+|||+|+++++|+|+|.++.|||||.|.+.+.|+||+||.||+|++|.++.|+.+.|...+
T Consensus 315 g~SrvLitTDVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~l 378 (400)
T KOG0328|consen 315 GKSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRIL 378 (400)
T ss_pred CCceEEEEechhhccCCcceeEEEEecCCCccHHHHhhhhccccccCCcceEEEEecHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999887654
No 2
>KOG0333|consensus
Probab=99.97 E-value=6.9e-30 Score=193.41 Aligned_cols=139 Identities=35% Similarity=0.610 Sum_probs=130.9
Q ss_pred hccceeeeecCCCCChHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCe
Q psy576 18 SNLARMYRETEGAGSPVQAQDETILLGIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRI 97 (159)
Q Consensus 18 ~~i~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~ 97 (159)
+.+.+.++.+.. +.|...|.++++.....++|||+++++.|+.+++.|.+.++++..+||+-.+++|+.+++.|+.|..
T Consensus 490 ~rveQ~v~m~~e-d~k~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t~ 568 (673)
T KOG0333|consen 490 PRVEQKVEMVSE-DEKRKKLIEILESNFDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENALADFREGTG 568 (673)
T ss_pred cchheEEEEecc-hHHHHHHHHHHHhCCCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHHhcCC
Confidence 456677777777 6779999999998888899999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeCCcccccccCCCcEEEEecCCCCHHHHHHHHhhccCCCCcceEEEEecCCCccc
Q psy576 98 WILITTELLGRGIDFRTVRLVVNYDFPSSAISYIHRIGRAGRGGREGKAVTFFTKQDAPL 157 (159)
Q Consensus 98 ~vlv~t~~~~~g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~g~~~~~~~~~~~~~ 157 (159)
.|||||+++++|+|||++++||||+.+++..+|.||+||+||.|+.|.++.|++..|.+.
T Consensus 569 dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiSflt~~dt~v 628 (673)
T KOG0333|consen 569 DILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTPADTAV 628 (673)
T ss_pred CEEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEEEeccchhHH
Confidence 999999999999999999999999999999999999999999999999999999988653
No 3
>KOG0331|consensus
Probab=99.97 E-value=3.1e-30 Score=197.81 Aligned_cols=140 Identities=34% Similarity=0.633 Sum_probs=127.5
Q ss_pred hhhccceeeeecCCCCChHHHHHHHHhc---CCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHH
Q psy576 16 VKSNLARMYRETEGAGSPVQAQDETILL---GIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSF 92 (159)
Q Consensus 16 ~~~~i~~~~~~~~~~~~k~~~l~~~~~~---~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f 92 (159)
...+|.+....++. ..|...|.+++.. ...+++||||+|++.|+++...++..++++..+||+.++.+|..+++.|
T Consensus 309 a~~~i~qive~~~~-~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~F 387 (519)
T KOG0331|consen 309 ANHNIRQIVEVCDE-TAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGF 387 (519)
T ss_pred hhcchhhhhhhcCH-HHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhc
Confidence 34577777777774 6788888777764 3567899999999999999999998889999999999999999999999
Q ss_pred hcCCeeEEEEeCCcccccccCCCcEEEEecCCCCHHHHHHHHhhccCCCCcceEEEEecCCCcc
Q psy576 93 RTGRIWILITTELLGRGIDFRTVRLVVNYDFPSSAISYIHRIGRAGRGGREGKAVTFFTKQDAP 156 (159)
Q Consensus 93 ~~~~~~vlv~t~~~~~g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~g~~~~~~~~~~~~ 156 (159)
++|+..|||||+++++|+|+|++++||||++|.+.++|.||+||+||.|+.|.++.|+...+..
T Consensus 388 reG~~~vLVATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~ 451 (519)
T KOG0331|consen 388 REGKSPVLVATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAK 451 (519)
T ss_pred ccCCcceEEEcccccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999877654
No 4
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=1.2e-29 Score=198.94 Aligned_cols=138 Identities=33% Similarity=0.603 Sum_probs=131.2
Q ss_pred hhhccceeeeecCCCCChHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcC
Q psy576 16 VKSNLARMYRETEGAGSPVQAQDETILLGIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTG 95 (159)
Q Consensus 16 ~~~~i~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~ 95 (159)
..+.|.+++..+.....|+..|..++......++||||+++..++.++..|...++++..+||++++++|.++++.|++|
T Consensus 243 ~~~~i~q~~~~v~~~~~k~~~L~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g 322 (513)
T COG0513 243 TLKKIKQFYLEVESEEEKLELLLKLLKDEDEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDG 322 (513)
T ss_pred cccCceEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcC
Confidence 45788899999988556999999999987777899999999999999999999999999999999999999999999999
Q ss_pred CeeEEEEeCCcccccccCCCcEEEEecCCCCHHHHHHHHhhccCCCCcceEEEEecCC
Q psy576 96 RIWILITTELLGRGIDFRTVRLVVNYDFPSSAISYIHRIGRAGRGGREGKAVTFFTKQ 153 (159)
Q Consensus 96 ~~~vlv~t~~~~~g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~g~~~~~~~~~ 153 (159)
+.+|||||+++++|+|+|++++|||||.|.+++.|.||+||+||.|..|.++.|+.+.
T Consensus 323 ~~~vLVaTDvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~ 380 (513)
T COG0513 323 ELRVLVATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEE 380 (513)
T ss_pred CCCEEEEechhhccCCccccceeEEccCCCCHHHheeccCccccCCCCCeEEEEeCcH
Confidence 9999999999999999999999999999999999999999999999999999999874
No 5
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.96 E-value=4.7e-29 Score=194.03 Aligned_cols=137 Identities=26% Similarity=0.486 Sum_probs=126.9
Q ss_pred ccceeeeecCCCCChHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCee
Q psy576 19 NLARMYRETEGAGSPVQAQDETILLGIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIW 98 (159)
Q Consensus 19 ~i~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ 98 (159)
.+.+.+..+.. ..|...+..++......++||||++++.++.+++.|.+.+..+..+||++++.+|..+++.|++|+.+
T Consensus 216 ~i~~~~~~~~~-~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~ 294 (460)
T PRK11776 216 AIEQRFYEVSP-DERLPALQRLLLHHQPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCS 294 (460)
T ss_pred CeeEEEEEeCc-HHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCc
Confidence 36677777766 45899999999877778899999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCcccccccCCCcEEEEecCCCCHHHHHHHHhhccCCCCcceEEEEecCCCcc
Q psy576 99 ILITTELLGRGIDFRTVRLVVNYDFPSSAISYIHRIGRAGRGGREGKAVTFFTKQDAP 156 (159)
Q Consensus 99 vlv~t~~~~~g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~g~~~~~~~~~~~~ 156 (159)
|||||+++++|+|+|++++||+++.|.+...|.||+||+||.|..|.++.++.+.|..
T Consensus 295 vLVaTdv~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~ 352 (460)
T PRK11776 295 VLVATDVAARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQ 352 (460)
T ss_pred EEEEecccccccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcceEEEEEchhHHH
Confidence 9999999999999999999999999999999999999999999999999999887643
No 6
>KOG0332|consensus
Probab=99.96 E-value=1.3e-28 Score=180.13 Aligned_cols=143 Identities=34% Similarity=0.527 Sum_probs=135.2
Q ss_pred HHhhhhccceeeeecCCCCChHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHH
Q psy576 13 KRRVKSNLARMYRETEGAGSPVQAQDETILLGIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSF 92 (159)
Q Consensus 13 ~~~~~~~i~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f 92 (159)
+....++|.++|..|..++.|.+.|.++.....-++.+|||.|+..+..++..+.+.|-.+..+||.|..++|..+++.|
T Consensus 297 eel~L~~IkQlyv~C~~~~~K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~F 376 (477)
T KOG0332|consen 297 EELALDNIKQLYVLCACRDDKYQALVNLYGLLTIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRF 376 (477)
T ss_pred hhccccchhhheeeccchhhHHHHHHHHHhhhhhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHH
Confidence 44557899999999999999999999998888889999999999999999999999999999999999999999999999
Q ss_pred hcCCeeEEEEeCCcccccccCCCcEEEEecCCC------CHHHHHHHHhhccCCCCcceEEEEecCCCc
Q psy576 93 RTGRIWILITTELLGRGIDFRTVRLVVNYDFPS------SAISYIHRIGRAGRGGREGKAVTFFTKQDA 155 (159)
Q Consensus 93 ~~~~~~vlv~t~~~~~g~~i~~~~~vi~~~~~~------~~~~~~q~~GR~~R~g~~g~~~~~~~~~~~ 155 (159)
+.|+.+|||+|++.++|+|++.+++|+|||.|. +.+.|+||+||+||+|..|.++.++++.+.
T Consensus 377 r~g~~kVLitTnV~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s 445 (477)
T KOG0332|consen 377 REGKEKVLITTNVCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDS 445 (477)
T ss_pred hcCcceEEEEechhhcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCc
Confidence 999999999999999999999999999999994 799999999999999999999999987754
No 7
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.96 E-value=6.2e-29 Score=191.59 Aligned_cols=135 Identities=27% Similarity=0.506 Sum_probs=122.4
Q ss_pred cceeeeecCCCCChHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCeeE
Q psy576 20 LARMYRETEGAGSPVQAQDETILLGIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWI 99 (159)
Q Consensus 20 i~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~v 99 (159)
+.+.+..... ..|...|..++......++||||++.+.++.++..|.+.+.++..+||+++.++|.++++.|++|+.+|
T Consensus 230 i~~~~~~~~~-~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~v 308 (423)
T PRK04837 230 IKEELFYPSN-EEKMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDI 308 (423)
T ss_pred eeEEEEeCCH-HHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcE
Confidence 3444443333 578888888888767789999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCcccccccCCCcEEEEecCCCCHHHHHHHHhhccCCCCcceEEEEecCCCc
Q psy576 100 LITTELLGRGIDFRTVRLVVNYDFPSSAISYIHRIGRAGRGGREGKAVTFFTKQDA 155 (159)
Q Consensus 100 lv~t~~~~~g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~g~~~~~~~~~~~ 155 (159)
||||+++++|+|+|++++||+|++|.+..+|.||+||+||.|..|.++.|+.+.|.
T Consensus 309 LVaTdv~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~ 364 (423)
T PRK04837 309 LVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYA 364 (423)
T ss_pred EEEechhhcCCCccccCEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHH
Confidence 99999999999999999999999999999999999999999999999999987653
No 8
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.96 E-value=2.3e-28 Score=189.85 Aligned_cols=137 Identities=29% Similarity=0.522 Sum_probs=123.4
Q ss_pred ccceeeeecCCCCChHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCee
Q psy576 19 NLARMYRETEGAGSPVQAQDETILLGIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIW 98 (159)
Q Consensus 19 ~i~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ 98 (159)
.+.+.+..++. ..|.+.+..++......++||||+++..++.+++.|.+.++++..+||+++..+|..+++.|++|+.+
T Consensus 219 ~i~~~~~~~~~-~~k~~~l~~l~~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~ 297 (456)
T PRK10590 219 QVTQHVHFVDK-KRKRELLSQMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIR 297 (456)
T ss_pred ceeEEEEEcCH-HHHHHHHHHHHHcCCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCc
Confidence 34445544444 56777788888776778999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCcccccccCCCcEEEEecCCCCHHHHHHHHhhccCCCCcceEEEEecCCCcc
Q psy576 99 ILITTELLGRGIDFRTVRLVVNYDFPSSAISYIHRIGRAGRGGREGKAVTFFTKQDAP 156 (159)
Q Consensus 99 vlv~t~~~~~g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~g~~~~~~~~~~~~ 156 (159)
|||||+++++|+|+|++++||+|++|.+..+|.||+||+||.|..|.++.++...|..
T Consensus 298 iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~ 355 (456)
T PRK10590 298 VLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHK 355 (456)
T ss_pred EEEEccHHhcCCCcccCCEEEEeCCCCCHHHhhhhccccccCCCCeeEEEEecHHHHH
Confidence 9999999999999999999999999999999999999999999999999999877654
No 9
>KOG0330|consensus
Probab=99.96 E-value=1.3e-28 Score=180.92 Aligned_cols=141 Identities=30% Similarity=0.436 Sum_probs=132.2
Q ss_pred hhhccceeeeecCCCCChHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcC
Q psy576 16 VKSNLARMYRETEGAGSPVQAQDETILLGIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTG 95 (159)
Q Consensus 16 ~~~~i~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~ 95 (159)
+-+.+.++|..+.. ..|...|..+++...+.++||||++-..+..++-.|+..++.+..+||.|+...|...++.|++|
T Consensus 271 tv~~lkQ~ylfv~~-k~K~~yLV~ll~e~~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~ 349 (476)
T KOG0330|consen 271 TVDHLKQTYLFVPG-KDKDTYLVYLLNELAGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAG 349 (476)
T ss_pred chHHhhhheEeccc-cccchhHHHHHHhhcCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhcc
Confidence 34677788888888 78999999999988889999999999999999999999999999999999999999999999999
Q ss_pred CeeEEEEeCCcccccccCCCcEEEEecCCCCHHHHHHHHhhccCCCCcceEEEEecCCCccc
Q psy576 96 RIWILITTELLGRGIDFRTVRLVVNYDFPSSAISYIHRIGRAGRGGREGKAVTFFTKQDAPL 157 (159)
Q Consensus 96 ~~~vlv~t~~~~~g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~g~~~~~~~~~~~~~ 157 (159)
...||+||+++++|+|+|.+++|||||.|.+..+|+||+||++|.|.+|.++.+++.-|.+.
T Consensus 350 ~r~iLv~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~ 411 (476)
T KOG0330|consen 350 ARSILVCTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVEL 411 (476)
T ss_pred CCcEEEecchhcccCCCCCceEEEecCCCCcHHHHHHHcccccccCCCcceEEEEehhhhHH
Confidence 99999999999999999999999999999999999999999999999999999998766543
No 10
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.96 E-value=3.5e-28 Score=187.95 Aligned_cols=139 Identities=30% Similarity=0.532 Sum_probs=127.6
Q ss_pred hccceeeeecCCCCChHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCe
Q psy576 18 SNLARMYRETEGAGSPVQAQDETILLGIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRI 97 (159)
Q Consensus 18 ~~i~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~ 97 (159)
..+.+++...+....|...|..++......++||||++++.++.++..|...++.+..+||+++..+|..+++.|++|+.
T Consensus 217 ~~i~~~~~~~~~~~~k~~~l~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~ 296 (434)
T PRK11192 217 KKIHQWYYRADDLEHKTALLCHLLKQPEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRV 296 (434)
T ss_pred cCceEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCC
Confidence 45666666666667788999999886667889999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeCCcccccccCCCcEEEEecCCCCHHHHHHHHhhccCCCCcceEEEEecCCCcc
Q psy576 98 WILITTELLGRGIDFRTVRLVVNYDFPSSAISYIHRIGRAGRGGREGKAVTFFTKQDAP 156 (159)
Q Consensus 98 ~vlv~t~~~~~g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~g~~~~~~~~~~~~ 156 (159)
+|||||+++++|+|+|++++||+++.|.+...|.||+||+||.|..|.++.++...|..
T Consensus 297 ~vLVaTd~~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~ 355 (434)
T PRK11192 297 NVLVATDVAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHL 355 (434)
T ss_pred cEEEEccccccCccCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEEEecHHHHH
Confidence 99999999999999999999999999999999999999999999999999999876653
No 11
>KOG0326|consensus
Probab=99.96 E-value=9e-29 Score=178.14 Aligned_cols=144 Identities=30% Similarity=0.477 Sum_probs=136.7
Q ss_pred HHhhhhccceeeeecCCCCChHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHH
Q psy576 13 KRRVKSNLARMYRETEGAGSPVQAQDETILLGIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSF 92 (159)
Q Consensus 13 ~~~~~~~i~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f 92 (159)
.+..+.++.++|..+.+ .+|+-.|..++.+.+-++.+|||+|...++-++..+.+.|+.+.++|+.|.++.|..++..|
T Consensus 290 ~eLtl~GvtQyYafV~e-~qKvhCLntLfskLqINQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdF 368 (459)
T KOG0326|consen 290 EELTLKGVTQYYAFVEE-RQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDF 368 (459)
T ss_pred hhhhhcchhhheeeech-hhhhhhHHHHHHHhcccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhh
Confidence 55667899999999998 79999999999988899999999999999999999999999999999999999999999999
Q ss_pred hcCCeeEEEEeCCcccccccCCCcEEEEecCCCCHHHHHHHHhhccCCCCcceEEEEecCCCccc
Q psy576 93 RTGRIWILITTELLGRGIDFRTVRLVVNYDFPSSAISYIHRIGRAGRGGREGKAVTFFTKQDAPL 157 (159)
Q Consensus 93 ~~~~~~vlv~t~~~~~g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~g~~~~~~~~~~~~~ 157 (159)
++|.++.||||+.+-+|+|++++++|||+|.|++.+.|++|+||.||+|..|.++.+++..|...
T Consensus 369 r~G~crnLVctDL~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~ 433 (459)
T KOG0326|consen 369 RNGKCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFN 433 (459)
T ss_pred hccccceeeehhhhhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999887643
No 12
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.95 E-value=2.1e-27 Score=185.42 Aligned_cols=136 Identities=29% Similarity=0.544 Sum_probs=124.1
Q ss_pred ccceeeeecCCCCChHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCee
Q psy576 19 NLARMYRETEGAGSPVQAQDETILLGIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIW 98 (159)
Q Consensus 19 ~i~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ 98 (159)
.+.+.+..+.. ..|...+..++......++||||++++.++.+++.|...++.+..+||+++.++|.++++.|++|++.
T Consensus 309 ~~~~~~~~~~~-~~k~~~l~~ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~ 387 (475)
T PRK01297 309 TVEQHVYAVAG-SDKYKLLYNLVTQNPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIR 387 (475)
T ss_pred cccEEEEEecc-hhHHHHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCc
Confidence 44455555554 67888888888876677999999999999999999998899999999999999999999999999999
Q ss_pred EEEEeCCcccccccCCCcEEEEecCCCCHHHHHHHHhhccCCCCcceEEEEecCCCc
Q psy576 99 ILITTELLGRGIDFRTVRLVVNYDFPSSAISYIHRIGRAGRGGREGKAVTFFTKQDA 155 (159)
Q Consensus 99 vlv~t~~~~~g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~g~~~~~~~~~~~ 155 (159)
+||||+++++|+|+|++++||+++.|.+..+|.||+||+||.|..|.++.|+.+.|.
T Consensus 388 vLvaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~ 444 (475)
T PRK01297 388 VLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDA 444 (475)
T ss_pred EEEEccccccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHH
Confidence 999999999999999999999999999999999999999999999999999987754
No 13
>PTZ00110 helicase; Provisional
Probab=99.95 E-value=1e-27 Score=189.41 Aligned_cols=137 Identities=34% Similarity=0.532 Sum_probs=122.2
Q ss_pred ccceeeeecCCCCChHHHHHHHHhcC--CCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCC
Q psy576 19 NLARMYRETEGAGSPVQAQDETILLG--IEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGR 96 (159)
Q Consensus 19 ~i~~~~~~~~~~~~k~~~l~~~~~~~--~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~ 96 (159)
.+.+.+..+.. ..|...|.+++... ...++||||++++.++.++..|...++++..+||+++.++|..+++.|++|+
T Consensus 349 ~i~q~~~~~~~-~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~ 427 (545)
T PTZ00110 349 NIKQEVFVVEE-HEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGK 427 (545)
T ss_pred CeeEEEEEEec-hhHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCC
Confidence 34444444444 56777777777653 4678999999999999999999988999999999999999999999999999
Q ss_pred eeEEEEeCCcccccccCCCcEEEEecCCCCHHHHHHHHhhccCCCCcceEEEEecCCCcc
Q psy576 97 IWILITTELLGRGIDFRTVRLVVNYDFPSSAISYIHRIGRAGRGGREGKAVTFFTKQDAP 156 (159)
Q Consensus 97 ~~vlv~t~~~~~g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~g~~~~~~~~~~~~ 156 (159)
..|||||+++++|+|+|++++||++++|.+..+|.||+||+||.|..|.++.|+++.+..
T Consensus 428 ~~ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~ 487 (545)
T PTZ00110 428 SPIMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYR 487 (545)
T ss_pred CcEEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEECcchHH
Confidence 999999999999999999999999999999999999999999999999999999987654
No 14
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.95 E-value=1.7e-27 Score=190.15 Aligned_cols=136 Identities=32% Similarity=0.552 Sum_probs=123.7
Q ss_pred ccceeeeecCCCCChHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCee
Q psy576 19 NLARMYRETEGAGSPVQAQDETILLGIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIW 98 (159)
Q Consensus 19 ~i~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ 98 (159)
.+.+.+..+.. ..|.+.|.+++......++||||+++..++++++.|.+.++.+..+||++++.+|..+++.|++|+.+
T Consensus 219 ~i~q~~~~v~~-~~k~~~L~~~L~~~~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ 297 (629)
T PRK11634 219 DISQSYWTVWG-MRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLD 297 (629)
T ss_pred ceEEEEEEech-hhHHHHHHHHHHhcCCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCC
Confidence 34455554444 46888888888876778899999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCcccccccCCCcEEEEecCCCCHHHHHHHHhhccCCCCcceEEEEecCCCc
Q psy576 99 ILITTELLGRGIDFRTVRLVVNYDFPSSAISYIHRIGRAGRGGREGKAVTFFTKQDA 155 (159)
Q Consensus 99 vlv~t~~~~~g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~g~~~~~~~~~~~ 155 (159)
|||||+++++|+|+|++++||+|+.|.+...|.||+||+||.|..|.+++|+.+.|.
T Consensus 298 ILVATdv~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~ 354 (629)
T PRK11634 298 ILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRER 354 (629)
T ss_pred EEEEcchHhcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcceEEEEechHHH
Confidence 999999999999999999999999999999999999999999999999999987654
No 15
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.95 E-value=1.4e-27 Score=189.38 Aligned_cols=136 Identities=29% Similarity=0.458 Sum_probs=123.6
Q ss_pred ccceeeeecCCCCChHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCee
Q psy576 19 NLARMYRETEGAGSPVQAQDETILLGIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIW 98 (159)
Q Consensus 19 ~i~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ 98 (159)
.+.+.+..... ..|...+..++......++||||+++..++.+++.|...++.+..+||+++..+|.++++.|++|+.+
T Consensus 231 ~i~q~~~~~~~-~~k~~~L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~ 309 (572)
T PRK04537 231 RVRQRIYFPAD-EEKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLE 309 (572)
T ss_pred ceeEEEEecCH-HHHHHHHHHHHhcccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCe
Confidence 34455554443 67888888888877778999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCcccccccCCCcEEEEecCCCCHHHHHHHHhhccCCCCcceEEEEecCCCc
Q psy576 99 ILITTELLGRGIDFRTVRLVVNYDFPSSAISYIHRIGRAGRGGREGKAVTFFTKQDA 155 (159)
Q Consensus 99 vlv~t~~~~~g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~g~~~~~~~~~~~ 155 (159)
|||||+++++|+|+|++++||+|+.|.+..+|.||+||+||.|..|.+++|+.+.+.
T Consensus 310 VLVaTdv~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~ 366 (572)
T PRK04537 310 ILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYA 366 (572)
T ss_pred EEEEehhhhcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHH
Confidence 999999999999999999999999999999999999999999999999999987654
No 16
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.95 E-value=3.2e-27 Score=185.85 Aligned_cols=136 Identities=32% Similarity=0.562 Sum_probs=118.9
Q ss_pred cceeeeecCCCCChHHHHHHHHhcC--CCCCEEEEecchHHHHHHHHHHHh-CCCceEEEecCCCHHHHHHHHHHHhcCC
Q psy576 20 LARMYRETEGAGSPVQAQDETILLG--IEPPVLVFVQSKERAQELYNELIY-DGINVDVIHSDRTQKQRDNVVRSFRTGR 96 (159)
Q Consensus 20 i~~~~~~~~~~~~k~~~l~~~~~~~--~~~~~lif~~~~~~~~~l~~~l~~-~~~~~~~~~~~~~~~~r~~~~~~f~~~~ 96 (159)
+.+.+..+.. ..|...+.+++... ...++||||+++..++.+++.|.. .++++..+||+++..+|..+++.|++|+
T Consensus 340 v~q~~~~~~~-~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~ 418 (518)
T PLN00206 340 VKQLAIWVET-KQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGE 418 (518)
T ss_pred eeEEEEeccc-hhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCC
Confidence 4455555554 45666777777642 235799999999999999999975 5889999999999999999999999999
Q ss_pred eeEEEEeCCcccccccCCCcEEEEecCCCCHHHHHHHHhhccCCCCcceEEEEecCCCcc
Q psy576 97 IWILITTELLGRGIDFRTVRLVVNYDFPSSAISYIHRIGRAGRGGREGKAVTFFTKQDAP 156 (159)
Q Consensus 97 ~~vlv~t~~~~~g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~g~~~~~~~~~~~~ 156 (159)
.+|||||+++++|+|+|++++||+|++|.+..+|.||+||+||.|..|.+++|+...+..
T Consensus 419 ~~ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~ 478 (518)
T PLN00206 419 VPVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEEDRN 478 (518)
T ss_pred CCEEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEchhHHH
Confidence 999999999999999999999999999999999999999999999999999999877643
No 17
>PTZ00424 helicase 45; Provisional
Probab=99.95 E-value=2.7e-27 Score=181.31 Aligned_cols=139 Identities=35% Similarity=0.585 Sum_probs=124.6
Q ss_pred hccceeeeecCCCCChHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCe
Q psy576 18 SNLARMYRETEGAGSPVQAQDETILLGIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRI 97 (159)
Q Consensus 18 ~~i~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~ 97 (159)
+.+.+++........+...+..++......++||||++++.++.+++.|...+..+..+||+++..+|..+++.|++|+.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~ 318 (401)
T PTZ00424 239 EGIRQFYVAVEKEEWKFDTLCDLYETLTITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGST 318 (401)
T ss_pred CCceEEEEecChHHHHHHHHHHHHHhcCCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCC
Confidence 34555665555545577777777776667789999999999999999999889999999999999999999999999999
Q ss_pred eEEEEeCCcccccccCCCcEEEEecCCCCHHHHHHHHhhccCCCCcceEEEEecCCCcc
Q psy576 98 WILITTELLGRGIDFRTVRLVVNYDFPSSAISYIHRIGRAGRGGREGKAVTFFTKQDAP 156 (159)
Q Consensus 98 ~vlv~t~~~~~g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~g~~~~~~~~~~~~ 156 (159)
+|||||+++++|+|+|++++||++++|.+...|.||+||+||.|..|.|+.++.+.+.+
T Consensus 319 ~vLvaT~~l~~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~ 377 (401)
T PTZ00424 319 RVLITTDLLARGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDIE 377 (401)
T ss_pred CEEEEcccccCCcCcccCCEEEEECCCCCHHHEeecccccccCCCCceEEEEEcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999877654
No 18
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.95 E-value=9.3e-27 Score=181.50 Aligned_cols=125 Identities=25% Similarity=0.395 Sum_probs=114.3
Q ss_pred ChHHHHHHHHh-cCCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCccccc
Q psy576 32 SPVQAQDETIL-LGIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGRGI 110 (159)
Q Consensus 32 ~k~~~l~~~~~-~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~g~ 110 (159)
...+.+.+++. ...++.+||||+++++++.++..|.+.++.+..+||+|++++|..+++.|.+|+.+|||||+++++|+
T Consensus 211 ~~~~~l~~~l~~~~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GI 290 (470)
T TIGR00614 211 KILEDLLRFIRKEFKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGI 290 (470)
T ss_pred cHHHHHHHHHHHhcCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccC
Confidence 44555666665 33455679999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcEEEEecCCCCHHHHHHHHhhccCCCCcceEEEEecCCCcc
Q psy576 111 DFRTVRLVVNYDFPSSAISYIHRIGRAGRGGREGKAVTFFTKQDAP 156 (159)
Q Consensus 111 ~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~g~~~~~~~~~~~~ 156 (159)
|+|++++||++++|.+...|.||+||+||.|..|.|++++.+.|..
T Consensus 291 D~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~ 336 (470)
T TIGR00614 291 NKPDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHLFYAPADIN 336 (470)
T ss_pred CcccceEEEEeCCCCCHHHHHhhhcCcCCCCCCceEEEEechhHHH
Confidence 9999999999999999999999999999999999999999987654
No 19
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.94 E-value=1.5e-26 Score=184.84 Aligned_cols=125 Identities=25% Similarity=0.446 Sum_probs=116.3
Q ss_pred ChHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCcccccc
Q psy576 32 SPVQAQDETILLGIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGRGID 111 (159)
Q Consensus 32 ~k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~g~~ 111 (159)
.+...+...+....+.++||||+++++++.++..|.+.++++..+||+|++++|.++++.|.+|+.+|||||+++++|+|
T Consensus 222 ~~~~~l~~~l~~~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GID 301 (607)
T PRK11057 222 KPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGIN 301 (607)
T ss_pred chHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCC
Confidence 45566667776667789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcEEEEecCCCCHHHHHHHHhhccCCCCcceEEEEecCCCcc
Q psy576 112 FRTVRLVVNYDFPSSAISYIHRIGRAGRGGREGKAVTFFTKQDAP 156 (159)
Q Consensus 112 i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~g~~~~~~~~~~~~ 156 (159)
+|++++||+++.|.+..+|.|++||+||.|.+|.|++++++.|..
T Consensus 302 ip~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~ 346 (607)
T PRK11057 302 KPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMA 346 (607)
T ss_pred CCCcCEEEEeCCCCCHHHHHHHhhhccCCCCCceEEEEeCHHHHH
Confidence 999999999999999999999999999999999999999887753
No 20
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.94 E-value=2.6e-26 Score=188.68 Aligned_cols=122 Identities=24% Similarity=0.368 Sum_probs=111.9
Q ss_pred HHHHHHHHhc-CCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCccccccc
Q psy576 34 VQAQDETILL-GIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGRGIDF 112 (159)
Q Consensus 34 ~~~l~~~~~~-~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~g~~i 112 (159)
...+.+++.. ..+.+.||||.+++.++.++..|...++++..+||+|++++|..+++.|.+|+++|||||+++++|+|+
T Consensus 667 le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDk 746 (1195)
T PLN03137 667 LEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINK 746 (1195)
T ss_pred HHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCc
Confidence 4455566653 235679999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEecCCCCHHHHHHHHhhccCCCCcceEEEEecCCCc
Q psy576 113 RTVRLVVNYDFPSSAISYIHRIGRAGRGGREGKAVTFFTKQDA 155 (159)
Q Consensus 113 ~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~g~~~~~~~~~~~ 155 (159)
|++++|||++.|.+++.|.|++||+||.|..+.|++|+...|.
T Consensus 747 PDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~ 789 (1195)
T PLN03137 747 PDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDY 789 (1195)
T ss_pred cCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHHH
Confidence 9999999999999999999999999999999999999987654
No 21
>KOG0335|consensus
Probab=99.94 E-value=4.2e-26 Score=172.96 Aligned_cols=154 Identities=31% Similarity=0.494 Sum_probs=132.7
Q ss_pred cccccccchhhHHhhh----------------hccceeeeecCCCCChHHHHHHHHhcCC----CC-----CEEEEecch
Q psy576 2 AVDFNHTNPALKRRVK----------------SNLARMYRETEGAGSPVQAQDETILLGI----EP-----PVLVFVQSK 56 (159)
Q Consensus 2 ~~~~~~~~~~~~~~~~----------------~~i~~~~~~~~~~~~k~~~l~~~~~~~~----~~-----~~lif~~~~ 56 (159)
|++|+.....+...+. +++.+....+.+ ..|...|.+++.... .. .++|||.++
T Consensus 269 SAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~~ni~q~i~~V~~-~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~ 347 (482)
T KOG0335|consen 269 SATFPKEIQRLAADFLKDNYIFLAVGRVGSTSENITQKILFVNE-MEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETK 347 (482)
T ss_pred eccCChhhhhhHHHHhhccceEEEEeeeccccccceeEeeeecc-hhhHHHHHHHhhcccCCcccCCcccceEEEEeecc
Confidence 7777777666654443 356677777777 466666666665322 33 799999999
Q ss_pred HHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCcccccccCCCcEEEEecCCCCHHHHHHHHhh
Q psy576 57 ERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGRGIDFRTVRLVVNYDFPSSAISYIHRIGR 136 (159)
Q Consensus 57 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~g~~i~~~~~vi~~~~~~~~~~~~q~~GR 136 (159)
+.++.+..+|...+++...+||..+..+|...+..|+.|+..+||||+++++|+|+|++++||+||.|.+..+|.||+||
T Consensus 348 ~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGR 427 (482)
T KOG0335|consen 348 RGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNGKAPVLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGR 427 (482)
T ss_pred chhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcceEEEEecCCCcc
Q psy576 137 AGRGGREGKAVTFFTKQDAP 156 (159)
Q Consensus 137 ~~R~g~~g~~~~~~~~~~~~ 156 (159)
+||.|+.|.+..|++..+..
T Consensus 428 TGR~Gn~G~atsf~n~~~~~ 447 (482)
T KOG0335|consen 428 TGRVGNGGRATSFFNEKNQN 447 (482)
T ss_pred cccCCCCceeEEEeccccch
Confidence 99999999999999965543
No 22
>KOG0344|consensus
Probab=99.94 E-value=6.3e-26 Score=173.70 Aligned_cols=142 Identities=56% Similarity=0.969 Sum_probs=133.2
Q ss_pred hccceeeeecCCCCChHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHH-HhCCCceEEEecCCCHHHHHHHHHHHhcCC
Q psy576 18 SNLARMYRETEGAGSPVQAQDETILLGIEPPVLVFVQSKERAQELYNEL-IYDGINVDVIHSDRTQKQRDNVVRSFRTGR 96 (159)
Q Consensus 18 ~~i~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l-~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~ 96 (159)
..+.|-.+.+..+..|...+.+++..+-..|++||+.+.+.|.+++..| .-.++++.++||..++.+|.+++++|+.|+
T Consensus 359 ~~V~QelvF~gse~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~ 438 (593)
T KOG0344|consen 359 ETVDQELVFCGSEKGKLLALRQLVASGFKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGK 438 (593)
T ss_pred hhhhhhheeeecchhHHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccC
Confidence 4566777777778899999999999998999999999999999999999 666899999999999999999999999999
Q ss_pred eeEEEEeCCcccccccCCCcEEEEecCCCCHHHHHHHHhhccCCCCcceEEEEecCCCccccC
Q psy576 97 IWILITTELLGRGIDFRTVRLVVNYDFPSSAISYIHRIGRAGRGGREGKAVTFFTKQDAPLLR 159 (159)
Q Consensus 97 ~~vlv~t~~~~~g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~g~~~~~~~~~~~~~~~ 159 (159)
++|||||+++++|+|+.+++.|||||.|.+.-+|++|+||+||.|+.|.++.|+.+.|.+.++
T Consensus 439 IwvLicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir 501 (593)
T KOG0344|consen 439 IWVLICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIR 501 (593)
T ss_pred eeEEEehhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhh
Confidence 999999999999999999999999999999999999999999999999999999999887654
No 23
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.94 E-value=7.3e-26 Score=180.80 Aligned_cols=125 Identities=25% Similarity=0.422 Sum_probs=116.8
Q ss_pred CChHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCccccc
Q psy576 31 GSPVQAQDETILLGIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGRGI 110 (159)
Q Consensus 31 ~~k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~g~ 110 (159)
..+...+.+.+....+.++||||++++.++.+++.|...++++..+||+|+.++|..+++.|.+|+.+|||||+++++|+
T Consensus 209 ~~~~~~l~~~l~~~~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GI 288 (591)
T TIGR01389 209 NNKQKFLLDYLKKHRGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGI 288 (591)
T ss_pred CCHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccC
Confidence 45677778888766678899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcEEEEecCCCCHHHHHHHHhhccCCCCcceEEEEecCCCc
Q psy576 111 DFRTVRLVVNYDFPSSAISYIHRIGRAGRGGREGKAVTFFTKQDA 155 (159)
Q Consensus 111 ~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~g~~~~~~~~~~~ 155 (159)
|+|++++||++++|.+..+|.|++||+||.|..+.|+++++..|.
T Consensus 289 D~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~il~~~~~d~ 333 (591)
T TIGR01389 289 DKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLPAEAILLYSPADI 333 (591)
T ss_pred cCCCCCEEEEcCCCCCHHHHhhhhccccCCCCCceEEEecCHHHH
Confidence 999999999999999999999999999999999999999887764
No 24
>KOG0342|consensus
Probab=99.93 E-value=1.1e-25 Score=169.42 Aligned_cols=143 Identities=28% Similarity=0.395 Sum_probs=130.3
Q ss_pred hhhhccceeeeecCCCCChHHHHHHHHhcCCC-CCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHh
Q psy576 15 RVKSNLARMYRETEGAGSPVQAQDETILLGIE-PPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFR 93 (159)
Q Consensus 15 ~~~~~i~~~~~~~~~~~~k~~~l~~~~~~~~~-~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~ 93 (159)
.+-+.+.+-|..+.. ..++..+..++..... .+++|||+|-..+..+++.|+...+++..+||+.++..|..+...|.
T Consensus 299 ~The~l~Qgyvv~~~-~~~f~ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~ 377 (543)
T KOG0342|consen 299 ETHERLEQGYVVAPS-DSRFSLLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFC 377 (543)
T ss_pred chhhcccceEEeccc-cchHHHHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHh
Confidence 344677787777777 4568888888887666 78999999999999999999998999999999999999999999999
Q ss_pred cCCeeEEEEeCCcccccccCCCcEEEEecCCCCHHHHHHHHhhccCCCCcceEEEEecCCCcccc
Q psy576 94 TGRIWILITTELLGRGIDFRTVRLVVNYDFPSSAISYIHRIGRAGRGGREGKAVTFFTKQDAPLL 158 (159)
Q Consensus 94 ~~~~~vlv~t~~~~~g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~g~~~~~~~~~~~~~~ 158 (159)
+.+.-||+||+++++|+|+|++++|+.+++|.++.+|+||+||++|.|..|.++.+..+.|..++
T Consensus 378 kaesgIL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Fl 442 (543)
T KOG0342|consen 378 KAESGILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFL 442 (543)
T ss_pred hcccceEEecchhhccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998887654
No 25
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.93 E-value=2.8e-25 Score=173.37 Aligned_cols=143 Identities=26% Similarity=0.449 Sum_probs=122.8
Q ss_pred HHhhhhccceeeeecCCCCChHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHH
Q psy576 13 KRRVKSNLARMYRETEGAGSPVQAQDETILLGIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSF 92 (159)
Q Consensus 13 ~~~~~~~i~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f 92 (159)
.+..+++|....+.......+...+.+ +.....++.||||.|++.++.++++|...++++..+|++|+.++|..+.++|
T Consensus 198 ~sfdRpNi~~~v~~~~~~~~q~~fi~~-~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f 276 (590)
T COG0514 198 GSFDRPNLALKVVEKGEPSDQLAFLAT-VLPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAF 276 (590)
T ss_pred ecCCCchhhhhhhhcccHHHHHHHHHh-hccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHH
Confidence 334455666655555533444443333 2244566789999999999999999999999999999999999999999999
Q ss_pred hcCCeeEEEEeCCcccccccCCCcEEEEecCCCCHHHHHHHHhhccCCCCcceEEEEecCCCcc
Q psy576 93 RTGRIWILITTELLGRGIDFRTVRLVVNYDFPSSAISYIHRIGRAGRGGREGKAVTFFTKQDAP 156 (159)
Q Consensus 93 ~~~~~~vlv~t~~~~~g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~g~~~~~~~~~~~~ 156 (159)
.+++..|+|||.+.++|+|-|++..||||+.|.++++|.|-+||+||+|.+..|++++.+.|..
T Consensus 277 ~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsYyQE~GRAGRDG~~a~aill~~~~D~~ 340 (590)
T COG0514 277 LNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPGSIESYYQETGRAGRDGLPAEAILLYSPEDIR 340 (590)
T ss_pred hcCCCcEEEEeccccCccCCCCceEEEEecCCCCHHHHHHHHhhccCCCCcceEEEeeccccHH
Confidence 9999999999999999999999999999999999999999999999999999999999988854
No 26
>KOG0340|consensus
Probab=99.92 E-value=8.7e-25 Score=159.24 Aligned_cols=140 Identities=31% Similarity=0.421 Sum_probs=126.4
Q ss_pred hhccceeeeecCCCCChHHHHHHHHhcC---CCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHh
Q psy576 17 KSNLARMYRETEGAGSPVQAQDETILLG---IEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFR 93 (159)
Q Consensus 17 ~~~i~~~~~~~~~~~~k~~~l~~~~~~~---~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~ 93 (159)
.+.+.+.|..++. ..|...|..++... ..+.++||+++..+++.++..|+..++.+..+|+.|++++|...+..|+
T Consensus 223 vetL~q~yI~~~~-~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFr 301 (442)
T KOG0340|consen 223 VETLYQGYILVSI-DVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFR 301 (442)
T ss_pred hhhhhhheeecch-hhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHh
Confidence 4556666777766 67888888888642 3567999999999999999999999999999999999999999999999
Q ss_pred cCCeeEEEEeCCcccccccCCCcEEEEecCCCCHHHHHHHHhhccCCCCcceEEEEecCCCccc
Q psy576 94 TGRIWILITTELLGRGIDFRTVRLVVNYDFPSSAISYIHRIGRAGRGGREGKAVTFFTKQDAPL 157 (159)
Q Consensus 94 ~~~~~vlv~t~~~~~g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~g~~~~~~~~~~~~~ 157 (159)
.+..+|||||+++++|+|||.+..|+|++.|.++.+|+||+||..|.|+.|.++.++..-|.+.
T Consensus 302 s~~~~iliaTDVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l 365 (442)
T KOG0340|consen 302 SNAARILIATDVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVEL 365 (442)
T ss_pred hcCccEEEEechhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHH
Confidence 9999999999999999999999999999999999999999999999999999999999877654
No 27
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.92 E-value=1.2e-23 Score=137.31 Aligned_cols=118 Identities=40% Similarity=0.670 Sum_probs=109.9
Q ss_pred ChHHHHHHHHhcC--CCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCcccc
Q psy576 32 SPVQAQDETILLG--IEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGRG 109 (159)
Q Consensus 32 ~k~~~l~~~~~~~--~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~g 109 (159)
.|...+.+++... .++++||||++.+.++.+.+.|.+.+.++..+||++++.++..+++.|+++...+|++|+++++|
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G 91 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARG 91 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcC
Confidence 7888888888764 36789999999999999999998888889999999999999999999999999999999999999
Q ss_pred cccCCCcEEEEecCCCCHHHHHHHHhhccCCCCcceEEEE
Q psy576 110 IDFRTVRLVVNYDFPSSAISYIHRIGRAGRGGREGKAVTF 149 (159)
Q Consensus 110 ~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~g~~~~~ 149 (159)
+|+|.+++|+.+++|++...+.|++||++|.|+.|.++++
T Consensus 92 ~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 92 IDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred cChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 9999999999999999999999999999999988887764
No 28
>KOG0341|consensus
Probab=99.92 E-value=8.3e-25 Score=161.41 Aligned_cols=122 Identities=33% Similarity=0.666 Sum_probs=114.8
Q ss_pred CChHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCccccc
Q psy576 31 GSPVQAQDETILLGIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGRGI 110 (159)
Q Consensus 31 ~~k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~g~ 110 (159)
+.|+-.|.+.+.+ ...|+||||..+..++.++++|.-.|..+..+||+-++++|...++.|+.|+.+|||+|++++.|+
T Consensus 407 EaKiVylLeCLQK-T~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGL 485 (610)
T KOG0341|consen 407 EAKIVYLLECLQK-TSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGL 485 (610)
T ss_pred hhhhhhHHHHhcc-CCCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccC
Confidence 5677777777776 567899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcEEEEecCCCCHHHHHHHHhhccCCCCcceEEEEecCC
Q psy576 111 DFRTVRLVVNYDFPSSAISYIHRIGRAGRGGREGKAVTFFTKQ 153 (159)
Q Consensus 111 ~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~g~~~~~~~~~ 153 (159)
|+|++.+|||||.|...++|.+|+||+||.|..|.+.+|++..
T Consensus 486 DFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~ 528 (610)
T KOG0341|consen 486 DFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFINKN 528 (610)
T ss_pred CCccchhhccCCChHHHHHHHHHhcccCCCCCcceeeeeeccc
Confidence 9999999999999999999999999999999999999999865
No 29
>KOG0338|consensus
Probab=99.91 E-value=2.1e-24 Score=163.50 Aligned_cols=130 Identities=32% Similarity=0.540 Sum_probs=122.0
Q ss_pred CCChHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCcccc
Q psy576 30 AGSPVQAQDETILLGIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGRG 109 (159)
Q Consensus 30 ~~~k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~g 109 (159)
+..+...|..++.......++||+.|++.|..+.-+|--.|++++-+||.+++.+|.+.++.|++.+++|||||+++++|
T Consensus 410 e~dRea~l~~l~~rtf~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRG 489 (691)
T KOG0338|consen 410 EGDREAMLASLITRTFQDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRG 489 (691)
T ss_pred ccccHHHHHHHHHHhcccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhcc
Confidence 35677788888888788899999999999999999888889999999999999999999999999999999999999999
Q ss_pred cccCCCcEEEEecCCCCHHHHHHHHhhccCCCCcceEEEEecCCCccccC
Q psy576 110 IDFRTVRLVVNYDFPSSAISYIHRIGRAGRGGREGKAVTFFTKQDAPLLR 159 (159)
Q Consensus 110 ~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~g~~~~~~~~~~~~~~~ 159 (159)
+||+.+..||||..|.+...|+||+||+.|.|+.|..+.|+..+|.+++|
T Consensus 490 LDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK 539 (691)
T KOG0338|consen 490 LDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLK 539 (691)
T ss_pred CCccceeEEEeccCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHHH
Confidence 99999999999999999999999999999999999999999999877653
No 30
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.91 E-value=3.7e-24 Score=173.92 Aligned_cols=118 Identities=23% Similarity=0.284 Sum_probs=106.6
Q ss_pred hHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHhC--------CCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeC
Q psy576 33 PVQAQDETILLGIEPPVLVFVQSKERAQELYNELIYD--------GINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTE 104 (159)
Q Consensus 33 k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~--------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~ 104 (159)
+...+..++.. +.++||||+|++.++.++..+++. +.++..+||++++++|.+++++|++|++++||||+
T Consensus 260 ~~~~l~~l~~~--~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd 337 (742)
T TIGR03817 260 AADLLADLVAE--GARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDGELLGVATTN 337 (742)
T ss_pred HHHHHHHHHHC--CCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHcCCceEEEECc
Confidence 45556666653 578999999999999999988653 45688999999999999999999999999999999
Q ss_pred CcccccccCCCcEEEEecCCCCHHHHHHHHhhccCCCCcceEEEEecC
Q psy576 105 LLGRGIDFRTVRLVVNYDFPSSAISYIHRIGRAGRGGREGKAVTFFTK 152 (159)
Q Consensus 105 ~~~~g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~g~~~~~~~~ 152 (159)
++++|+|+|++++||+++.|.+..+|.||+||+||.|..|.++++...
T Consensus 338 ~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~ 385 (742)
T TIGR03817 338 ALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARD 385 (742)
T ss_pred hHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCC
Confidence 999999999999999999999999999999999999999999988864
No 31
>KOG0345|consensus
Probab=99.91 E-value=4.6e-24 Score=160.14 Aligned_cols=140 Identities=26% Similarity=0.399 Sum_probs=127.7
Q ss_pred hhhccceeeeecCCCCChHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHhC--CCceEEEecCCCHHHHHHHHHHHh
Q psy576 16 VKSNLARMYRETEGAGSPVQAQDETILLGIEPPVLVFVQSKERAQELYNELIYD--GINVDVIHSDRTQKQRDNVVRSFR 93 (159)
Q Consensus 16 ~~~~i~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~ 93 (159)
.++.+..+|..+.. ..|...+..++......++|||++|=..++..+..+... +.++..+||.|...+|.++++.|.
T Consensus 226 tPS~L~~~Y~v~~a-~eK~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~ 304 (567)
T KOG0345|consen 226 TPSSLALEYLVCEA-DEKLSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFR 304 (567)
T ss_pred CchhhcceeeEecH-HHHHHHHHHHHhccccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHH
Confidence 55667788888887 799999999999888899999999999999988887554 678999999999999999999999
Q ss_pred cCCeeEEEEeCCcccccccCCCcEEEEecCCCCHHHHHHHHhhccCCCCcceEEEEecCCCcc
Q psy576 94 TGRIWILITTELLGRGIDFRTVRLVVNYDFPSSAISYIHRIGRAGRGGREGKAVTFFTKQDAP 156 (159)
Q Consensus 94 ~~~~~vlv~t~~~~~g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~g~~~~~~~~~~~~ 156 (159)
+..-.+|+||+++++|+|||++++|+++|+|.++..|.||+||++|.|+.|.+++|..+.|.+
T Consensus 305 ~~~~~vl~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~a 367 (567)
T KOG0345|consen 305 KLSNGVLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEA 367 (567)
T ss_pred hccCceEEeehhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecccHHH
Confidence 988889999999999999999999999999999999999999999999999999999886654
No 32
>KOG0336|consensus
Probab=99.90 E-value=5.6e-24 Score=157.91 Aligned_cols=138 Identities=29% Similarity=0.568 Sum_probs=124.6
Q ss_pred ccceeeeecCCCCChHHHHHHHHhcC-CCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCe
Q psy576 19 NLARMYRETEGAGSPVQAQDETILLG-IEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRI 97 (159)
Q Consensus 19 ~i~~~~~~~~~~~~k~~~l~~~~~~~-~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~ 97 (159)
.+.+.+ .+..+.+|++.+...+..+ ...++||||.++-.|+.+..-|.-.++..-.+||.-.+.+|+..++.|+.|+.
T Consensus 438 sVkQ~i-~v~~d~~k~~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~v 516 (629)
T KOG0336|consen 438 SVKQNI-IVTTDSEKLEIVQFFVANMSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEV 516 (629)
T ss_pred eeeeeE-EecccHHHHHHHHHHHHhcCCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCce
Confidence 455666 4555578888888888754 55689999999999999999888889999999999999999999999999999
Q ss_pred eEEEEeCCcccccccCCCcEEEEecCCCCHHHHHHHHhhccCCCCcceEEEEecCCCccc
Q psy576 98 WILITTELLGRGIDFRTVRLVVNYDFPSSAISYIHRIGRAGRGGREGKAVTFFTKQDAPL 157 (159)
Q Consensus 98 ~vlv~t~~~~~g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~g~~~~~~~~~~~~~ 157 (159)
+|||+|+.+++|+|+|+++||+|||+|.+.++|.||+||.||.|+.|..+.|.+..|.+.
T Consensus 517 rILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~~ 576 (629)
T KOG0336|consen 517 RILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTSISFLTRNDWSM 576 (629)
T ss_pred EEEEEechhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcceEEEEehhhHHH
Confidence 999999999999999999999999999999999999999999999999999999887654
No 33
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.90 E-value=4.5e-23 Score=169.68 Aligned_cols=123 Identities=22% Similarity=0.255 Sum_probs=113.4
Q ss_pred CChHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHH-hCCCceEEEecCCCHHHHHHHHHHHhcC--CeeEEEEeCCcc
Q psy576 31 GSPVQAQDETILLGIEPPVLVFVQSKERAQELYNELI-YDGINVDVIHSDRTQKQRDNVVRSFRTG--RIWILITTELLG 107 (159)
Q Consensus 31 ~~k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~-~~~~~~~~~~~~~~~~~r~~~~~~f~~~--~~~vlv~t~~~~ 107 (159)
+.|.+.|.+++......++||||++...+..+.+.|+ ..|+++..+||+|+..+|.++++.|+++ ...|||||++++
T Consensus 478 d~Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgs 557 (956)
T PRK04914 478 DPRVEWLIDFLKSHRSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIGS 557 (956)
T ss_pred CHHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhhc
Confidence 5688899999987778899999999999999999994 5689999999999999999999999984 589999999999
Q ss_pred cccccCCCcEEEEecCCCCHHHHHHHHhhccCCCCcceEEEEecCC
Q psy576 108 RGIDFRTVRLVVNYDFPSSAISYIHRIGRAGRGGREGKAVTFFTKQ 153 (159)
Q Consensus 108 ~g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~g~~~~~~~~~ 153 (159)
+|+|++.+++||+||.|+++..|.||+||++|.|+++.+.+++...
T Consensus 558 eGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~ 603 (956)
T PRK04914 558 EGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYL 603 (956)
T ss_pred cCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccC
Confidence 9999999999999999999999999999999999999887776543
No 34
>KOG0346|consensus
Probab=99.90 E-value=2.2e-23 Score=155.63 Aligned_cols=155 Identities=28% Similarity=0.437 Sum_probs=139.2
Q ss_pred CcccccccchhhHHhh----------------hhccceeeeecCCCCChHHHHHHHHh-cCCCCCEEEEecchHHHHHHH
Q psy576 1 MAVDFNHTNPALKRRV----------------KSNLARMYRETEGAGSPVQAQDETIL-LGIEPPVLVFVQSKERAQELY 63 (159)
Q Consensus 1 m~~~~~~~~~~~~~~~----------------~~~i~~~~~~~~~~~~k~~~l~~~~~-~~~~~~~lif~~~~~~~~~l~ 63 (159)
||||+++....+...+ .+++.++++.+++ ++|+.++..+++ ..-.++.|||+++.+.+..+.
T Consensus 207 mSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse-~DKflllyallKL~LI~gKsliFVNtIdr~YrLk 285 (569)
T KOG0346|consen 207 MSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSE-EDKFLLLYALLKLRLIRGKSLIFVNTIDRCYRLK 285 (569)
T ss_pred ehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEecc-chhHHHHHHHHHHHHhcCceEEEEechhhhHHHH
Confidence 7888888776664432 3678899999995 899999998887 356789999999999999999
Q ss_pred HHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeC-----------------------------------Cccc
Q psy576 64 NELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTE-----------------------------------LLGR 108 (159)
Q Consensus 64 ~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~-----------------------------------~~~~ 108 (159)
-.|.+.|++.+++.|.+|.+.|..++++|+.|-++++|||+ -+.+
T Consensus 286 LfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsR 365 (569)
T KOG0346|consen 286 LFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSR 365 (569)
T ss_pred HHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhccccccccccCCCCccccccccCchhchhc
Confidence 99999999999999999999999999999999999999998 1468
Q ss_pred ccccCCCcEEEEecCCCCHHHHHHHHhhccCCCCcceEEEEecCCCcc
Q psy576 109 GIDFRTVRLVVNYDFPSSAISYIHRIGRAGRGGREGKAVTFFTKQDAP 156 (159)
Q Consensus 109 g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~g~~~~~~~~~~~~ 156 (159)
|+|+..+..|+|+|.|.+...|+||+||++|.+++|.++.|+.+.+..
T Consensus 366 GIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~ 413 (569)
T KOG0346|consen 366 GIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPKEEF 413 (569)
T ss_pred cccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecchHHh
Confidence 999999999999999999999999999999999999999999987653
No 35
>KOG0343|consensus
Probab=99.90 E-value=5.5e-23 Score=157.14 Aligned_cols=139 Identities=27% Similarity=0.417 Sum_probs=131.8
Q ss_pred hhhhccceeeeecCCCCChHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHhC--CCceEEEecCCCHHHHHHHHHHH
Q psy576 15 RVKSNLARMYRETEGAGSPVQAQDETILLGIEPPVLVFVQSKERAQELYNELIYD--GINVDVIHSDRTQKQRDNVVRSF 92 (159)
Q Consensus 15 ~~~~~i~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f 92 (159)
-+++++.++|+.+.. ..|+..|.-.+......+.|||+.|-+++..+++.++.. |+++..+||+|++..|.+++..|
T Consensus 283 atP~~L~Q~y~~v~l-~~Ki~~L~sFI~shlk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F 361 (758)
T KOG0343|consen 283 ATPSNLQQSYVIVPL-EDKIDMLWSFIKSHLKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKF 361 (758)
T ss_pred cChhhhhheEEEEeh-hhHHHHHHHHHHhccccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHH
Confidence 457788999999988 799999999999988999999999999999999998765 88999999999999999999999
Q ss_pred hcCCeeEEEEeCCcccccccCCCcEEEEecCCCCHHHHHHHHhhccCCCCcceEEEEecCCC
Q psy576 93 RTGRIWILITTELLGRGIDFRTVRLVVNYDFPSSAISYIHRIGRAGRGGREGKAVTFFTKQD 154 (159)
Q Consensus 93 ~~~~~~vlv~t~~~~~g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~g~~~~~~~~~~ 154 (159)
...+--||+||+++++|+|+|.+++||.+|+|.++..|+||+||+.|.+..|.++++..+.|
T Consensus 362 ~~~~~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psE 423 (758)
T KOG0343|consen 362 VRKRAVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSE 423 (758)
T ss_pred HHhcceEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchh
Confidence 99999999999999999999999999999999999999999999999999999999999887
No 36
>KOG0327|consensus
Probab=99.89 E-value=5.8e-23 Score=150.86 Aligned_cols=141 Identities=38% Similarity=0.635 Sum_probs=132.2
Q ss_pred hhhhccceeeeecCCCCChHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhc
Q psy576 15 RVKSNLARMYRETEGAGSPVQAQDETILLGIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRT 94 (159)
Q Consensus 15 ~~~~~i~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 94 (159)
...+.++++|...... .|+..|.++.. ...+.+|||++.+.++.+...|..+++.+..+||.|.+.+|..++..|+.
T Consensus 235 ltl~gikq~~i~v~k~-~k~~~l~dl~~--~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~ 311 (397)
T KOG0327|consen 235 LTLEGIKQFYINVEKE-EKLDTLCDLYR--RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRS 311 (397)
T ss_pred hhhhheeeeeeecccc-ccccHHHHHHH--hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhc
Confidence 5568999999999994 59999999999 66789999999999999999998899999999999999999999999999
Q ss_pred CCeeEEEEeCCcccccccCCCcEEEEecCCCCHHHHHHHHhhccCCCCcceEEEEecCCCcccc
Q psy576 95 GRIWILITTELLGRGIDFRTVRLVVNYDFPSSAISYIHRIGRAGRGGREGKAVTFFTKQDAPLL 158 (159)
Q Consensus 95 ~~~~vlv~t~~~~~g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~g~~~~~~~~~~~~~~ 158 (159)
|+.+|||+|+.+++|+|+..++.|++|+.|...++|.+|+||+||.|.+|.++.++...|...+
T Consensus 312 gssrvlIttdl~argidv~~~slvinydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~l 375 (397)
T KOG0327|consen 312 GSSRVLITTDLLARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDL 375 (397)
T ss_pred CCceEEeeccccccccchhhcceeeeeccccchhhhhhhcccccccCCCceeeeeehHhhHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998776543
No 37
>KOG0350|consensus
Probab=99.88 E-value=1.7e-22 Score=152.81 Aligned_cols=139 Identities=32% Similarity=0.436 Sum_probs=125.0
Q ss_pred hhccceeeeecCCCCChHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHH-h---CCCceEEEecCCCHHHHHHHHHHH
Q psy576 17 KSNLARMYRETEGAGSPVQAQDETILLGIEPPVLVFVQSKERAQELYNELI-Y---DGINVDVIHSDRTQKQRDNVVRSF 92 (159)
Q Consensus 17 ~~~i~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~-~---~~~~~~~~~~~~~~~~r~~~~~~f 92 (159)
++.+.++.+.++. ..|...+..++......++|+|+++.+.+.++...|+ . .+.++..++|+++...|.+.++.|
T Consensus 401 p~~l~~~~vv~~~-~~kpl~~~~lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f 479 (620)
T KOG0350|consen 401 PSSLSHRLVVTEP-KFKPLAVYALITSNKLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKF 479 (620)
T ss_pred Chhhhhceeeccc-ccchHhHHHHHHHhhcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHH
Confidence 3455566666655 7899999999998888899999999999999999886 2 256777899999999999999999
Q ss_pred hcCCeeEEEEeCCcccccccCCCcEEEEecCCCCHHHHHHHHhhccCCCCcceEEEEecCCCcc
Q psy576 93 RTGRIWILITTELLGRGIDFRTVRLVVNYDFPSSAISYIHRIGRAGRGGREGKAVTFFTKQDAP 156 (159)
Q Consensus 93 ~~~~~~vlv~t~~~~~g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~g~~~~~~~~~~~~ 156 (159)
..|++.+||||+++++|+|+.+++.||+|++|.+...|.||+||++|+|+.|.|+.+....+..
T Consensus 480 ~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~a~tll~~~~~r 543 (620)
T KOG0350|consen 480 AKGDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGYAITLLDKHEKR 543 (620)
T ss_pred hcCCceEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCceEEEeeccccch
Confidence 9999999999999999999999999999999999999999999999999999999999987653
No 38
>KOG0334|consensus
Probab=99.88 E-value=2.6e-22 Score=162.12 Aligned_cols=154 Identities=32% Similarity=0.542 Sum_probs=138.0
Q ss_pred cccccccchhhHH---------------hhhhccceeeeecCCCCChHHHHHHHHhc-CCCCCEEEEecchHHHHHHHHH
Q psy576 2 AVDFNHTNPALKR---------------RVKSNLARMYRETEGAGSPVQAQDETILL-GIEPPVLVFVQSKERAQELYNE 65 (159)
Q Consensus 2 ~~~~~~~~~~~~~---------------~~~~~i~~~~~~~~~~~~k~~~l~~~~~~-~~~~~~lif~~~~~~~~~l~~~ 65 (159)
|++|+.....++. .+-+.+.+.+..+..+..|+..|.+++.. ....+++|||...+.|+.+.+-
T Consensus 553 Satfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V~~~e~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~ 632 (997)
T KOG0334|consen 553 SATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRVCAIENEKFLKLLELLGERYEDGKTIIFVDKQEKADALLRD 632 (997)
T ss_pred hhhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEEEEecCchHHHHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHH
Confidence 5666666554433 33357788889999779999999999973 4578999999999999999999
Q ss_pred HHhCCCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCcccccccCCCcEEEEecCCCCHHHHHHHHhhccCCCCcce
Q psy576 66 LIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGRGIDFRTVRLVVNYDFPSSAISYIHRIGRAGRGGREGK 145 (159)
Q Consensus 66 l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~g~ 145 (159)
|.+.++++..+||+.+..+|..++++|+++.+.+||+|+.+++|+|++.+..||||++|.+.++|.+|+||+||.|++|.
T Consensus 633 L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~ 712 (997)
T KOG0334|consen 633 LQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGA 712 (997)
T ss_pred HHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEEcccchhHHHHHHHhcccccCCccce
Confidence 99999998889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCc
Q psy576 146 AVTFFTKQDA 155 (159)
Q Consensus 146 ~~~~~~~~~~ 155 (159)
+++|..+.+.
T Consensus 713 AvtFi~p~q~ 722 (997)
T KOG0334|consen 713 AVTFITPDQL 722 (997)
T ss_pred eEEEeChHHh
Confidence 9999988543
No 39
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.88 E-value=1.3e-21 Score=148.43 Aligned_cols=130 Identities=28% Similarity=0.420 Sum_probs=113.2
Q ss_pred eecCCCCChHHHHHHHHh----cCCCCCEEEEecchHHHHHHHHHHHhCCCceE-EEe--------cCCCHHHHHHHHHH
Q psy576 25 RETEGAGSPVQAQDETIL----LGIEPPVLVFVQSKERAQELYNELIYDGINVD-VIH--------SDRTQKQRDNVVRS 91 (159)
Q Consensus 25 ~~~~~~~~k~~~l~~~~~----~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~-~~~--------~~~~~~~r~~~~~~ 91 (159)
....-.+-|++.+.+++. +..+.++|||++.+++++.+.++|.+.+.++. .+- .||++.++.+++++
T Consensus 341 ~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~ 420 (542)
T COG1111 341 DESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQ 420 (542)
T ss_pred ccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccccccccccCHHHHHHHHHH
Confidence 334445678888887775 34556899999999999999999998877663 333 36999999999999
Q ss_pred HhcCCeeEEEEeCCcccccccCCCcEEEEecCCCCHHHHHHHHhhccCCCCcceEEEEecCCCc
Q psy576 92 FRTGRIWILITTELLGRGIDFRTVRLVVNYDFPSSAISYIHRIGRAGRGGREGKAVTFFTKQDA 155 (159)
Q Consensus 92 f~~~~~~vlv~t~~~~~g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~g~~~~~~~~~~~ 155 (159)
|++|++.|||||+++++|+|||+++.||.|++..|+.-++||.||+||. .+|.+++++..+..
T Consensus 421 Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Grv~vLvt~gtr 483 (542)
T COG1111 421 FRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGRVVVLVTEGTR 483 (542)
T ss_pred HhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-CCCeEEEEEecCch
Confidence 9999999999999999999999999999999999999999999999999 78999999988743
No 40
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.87 E-value=1.8e-21 Score=160.98 Aligned_cols=97 Identities=26% Similarity=0.384 Sum_probs=91.0
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhC------CCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCcccccccCCCcEE
Q psy576 45 IEPPVLVFVQSKERAQELYNELIYD------GINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGRGIDFRTVRLV 118 (159)
Q Consensus 45 ~~~~~lif~~~~~~~~~l~~~l~~~------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~g~~i~~~~~v 118 (159)
..+++||||+|++.++.++..|++. +..+..+||+++.++|..+++.|++|++++||||+++++|+|+|++++|
T Consensus 283 ~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~V 362 (876)
T PRK13767 283 EHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLV 362 (876)
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEE
Confidence 3578999999999999999998763 3578999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCHHHHHHHHhhccCCC
Q psy576 119 VNYDFPSSAISYIHRIGRAGRGG 141 (159)
Q Consensus 119 i~~~~~~~~~~~~q~~GR~~R~g 141 (159)
|+++.|.+...|.||+||+||.+
T Consensus 363 I~~~~P~sv~~ylQRiGRaGR~~ 385 (876)
T PRK13767 363 VLLGSPKSVSRLLQRIGRAGHRL 385 (876)
T ss_pred EEeCCCCCHHHHHHhcccCCCCC
Confidence 99999999999999999999874
No 41
>KOG4284|consensus
Probab=99.87 E-value=3.9e-22 Score=154.92 Aligned_cols=137 Identities=33% Similarity=0.447 Sum_probs=126.5
Q ss_pred ccceeeeecCCCCC-------hHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHH
Q psy576 19 NLARMYRETEGAGS-------PVQAQDETILLGIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRS 91 (159)
Q Consensus 19 ~i~~~~~~~~~~~~-------k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~ 91 (159)
+|+++++.+..... |++.|-+++..-+..++||||+....|+-++.+|...|+++.++.|.|++.+|..++++
T Consensus 238 GikQyv~~~~s~nnsveemrlklq~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~ 317 (980)
T KOG4284|consen 238 GIKQYVVAKCSPNNSVEEMRLKLQKLTHVFKSIPYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQ 317 (980)
T ss_pred chhheeeeccCCcchHHHHHHHHHHHHHHHhhCchHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHH
Confidence 77888888777433 77778888888788899999999999999999999999999999999999999999999
Q ss_pred HhcCCeeEEEEeCCcccccccCCCcEEEEecCCCCHHHHHHHHhhccCCCCcceEEEEecCCCc
Q psy576 92 FRTGRIWILITTELLGRGIDFRTVRLVVNYDFPSSAISYIHRIGRAGRGGREGKAVTFFTKQDA 155 (159)
Q Consensus 92 f~~~~~~vlv~t~~~~~g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~g~~~~~~~~~~~ 155 (159)
++.-..+|||+|+..++|+|-+.++.|||.|+|-+-..|+||+||+||+|..|.+++|+-..+.
T Consensus 318 lr~f~~rILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e 381 (980)
T KOG4284|consen 318 LRAFRVRILVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERE 381 (980)
T ss_pred hhhceEEEEEecchhhccCCccccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccchh
Confidence 9999999999999999999999999999999999999999999999999999999999876654
No 42
>KOG0339|consensus
Probab=99.87 E-value=5.8e-22 Score=150.42 Aligned_cols=140 Identities=31% Similarity=0.541 Sum_probs=130.0
Q ss_pred hccceeeeecCCCCChHHHHHHHHhc-CCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCC
Q psy576 18 SNLARMYRETEGAGSPVQAQDETILL-GIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGR 96 (159)
Q Consensus 18 ~~i~~~~~~~~~~~~k~~~l~~~~~~-~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~ 96 (159)
+.|.+.+..+.....|+..|.+-|-. ...+++|+|+..+..++++...|+..++++..+||++.+.+|.+++..|+++.
T Consensus 439 ~dITQ~V~V~~s~~~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~ 518 (731)
T KOG0339|consen 439 EDITQTVSVCPSEEKKLNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKR 518 (731)
T ss_pred cchhheeeeccCcHHHHHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcC
Confidence 57888888888888899887766654 45579999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEeCCcccccccCCCcEEEEecCCCCHHHHHHHHhhccCCCCcceEEEEecCCCccc
Q psy576 97 IWILITTELLGRGIDFRTVRLVVNYDFPSSAISYIHRIGRAGRGGREGKAVTFFTKQDAPL 157 (159)
Q Consensus 97 ~~vlv~t~~~~~g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~g~~~~~~~~~~~~~ 157 (159)
..|||+|+++.+|+|||++..|++||.-.+.+.+.||+||.||.|..|.++.|+++.|.++
T Consensus 519 ~~VlvatDvaargldI~~ikTVvnyD~ardIdththrigrtgRag~kGvayTlvTeKDa~f 579 (731)
T KOG0339|consen 519 KPVLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAEF 579 (731)
T ss_pred CceEEEeeHhhcCCCccccceeecccccchhHHHHHHhhhcccccccceeeEEechhhHHH
Confidence 9999999999999999999999999999999999999999999999999999999988764
No 43
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.87 E-value=1.8e-21 Score=155.88 Aligned_cols=108 Identities=23% Similarity=0.281 Sum_probs=95.7
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhC--CCceEEEecCCCHHHHHHHHHHH-hcCCeeEEEEeCCcccccccCCCcEEEEe
Q psy576 45 IEPPVLVFVQSKERAQELYNELIYD--GINVDVIHSDRTQKQRDNVVRSF-RTGRIWILITTELLGRGIDFRTVRLVVNY 121 (159)
Q Consensus 45 ~~~~~lif~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f-~~~~~~vlv~t~~~~~g~~i~~~~~vi~~ 121 (159)
.++++||||+++++++.+.+.|.+. ++.+..+||++++. ++.++.| ++|+.+|||||+++++|+|+|++++||++
T Consensus 394 ~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID~ 471 (675)
T PHA02653 394 KGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNATHVYDT 471 (675)
T ss_pred cCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCeeEEEEC
Confidence 3468999999999999999999876 68899999999874 4566776 68999999999999999999999999999
Q ss_pred c---CCC---------CHHHHHHHHhhccCCCCcceEEEEecCCCc
Q psy576 122 D---FPS---------SAISYIHRIGRAGRGGREGKAVTFFTKQDA 155 (159)
Q Consensus 122 ~---~~~---------~~~~~~q~~GR~~R~g~~g~~~~~~~~~~~ 155 (159)
+ .|. |.++|.||+||+||. .+|.|+.+++..+.
T Consensus 472 G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~ 516 (675)
T PHA02653 472 GRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLL 516 (675)
T ss_pred CCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHh
Confidence 8 554 888999999999999 78999999987653
No 44
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.87 E-value=6.5e-21 Score=144.21 Aligned_cols=121 Identities=19% Similarity=0.342 Sum_probs=99.3
Q ss_pred CChHHHHHHHHhc-CCCCCEEEEecchHHHHHHHHHHHhCCC--ceEEEecCCCHHHHHHH----HHHHhcCCeeEEEEe
Q psy576 31 GSPVQAQDETILL-GIEPPVLVFVQSKERAQELYNELIYDGI--NVDVIHSDRTQKQRDNV----VRSFRTGRIWILITT 103 (159)
Q Consensus 31 ~~k~~~l~~~~~~-~~~~~~lif~~~~~~~~~l~~~l~~~~~--~~~~~~~~~~~~~r~~~----~~~f~~~~~~vlv~t 103 (159)
..+...+.+++.. ..++++||||+++++++.++..|++.+. .+..+||++++.+|.+. ++.|++++..|||||
T Consensus 206 ~~~~~~l~~l~~~~~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT 285 (358)
T TIGR01587 206 VGEISSLERLLEFIKKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVAT 285 (358)
T ss_pred ccCHHHHHHHHHHhhCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEEC
Confidence 3556666666653 3467899999999999999999987654 58999999999999764 888999999999999
Q ss_pred CCcccccccCCCcEEEEecCCCCHHHHHHHHhhccCCCCc----ceEEEEecCCC
Q psy576 104 ELLGRGIDFRTVRLVVNYDFPSSAISYIHRIGRAGRGGRE----GKAVTFFTKQD 154 (159)
Q Consensus 104 ~~~~~g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~----g~~~~~~~~~~ 154 (159)
+++++|+|++ +++++++..| ..+|.||+||+||.|.. |.++++....+
T Consensus 286 ~~~~~GiDi~-~~~vi~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~ 337 (358)
T TIGR01587 286 QVIEASLDIS-ADVMITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITIAPE 337 (358)
T ss_pred cchhceeccC-CCEEEEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEeecCC
Confidence 9999999996 7778887655 88999999999998843 36777766543
No 45
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.87 E-value=2.4e-21 Score=153.73 Aligned_cols=128 Identities=22% Similarity=0.212 Sum_probs=108.7
Q ss_pred eeecCCCCChHHHHHHHHhcC--CCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCeeEEE
Q psy576 24 YRETEGAGSPVQAQDETILLG--IEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILI 101 (159)
Q Consensus 24 ~~~~~~~~~k~~~l~~~~~~~--~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv 101 (159)
++.+.. ..|...|.+++... .+.++||||+|.+.++.++..|.+.++++..+||.++ +++..+..+..++..|+|
T Consensus 450 ~v~~t~-~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~g~VlV 526 (656)
T PRK12898 450 EVFLTA-AAKWAAVAARVRELHAQGRPVLVGTRSVAASERLSALLREAGLPHQVLNAKQD--AEEAAIVARAGQRGRITV 526 (656)
T ss_pred EEEeCH-HHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCCCcEEE
Confidence 333443 57888888888653 3578999999999999999999999999999999865 445555666666667999
Q ss_pred EeCCcccccccC---CCc-----EEEEecCCCCHHHHHHHHhhccCCCCcceEEEEecCCC
Q psy576 102 TTELLGRGIDFR---TVR-----LVVNYDFPSSAISYIHRIGRAGRGGREGKAVTFFTKQD 154 (159)
Q Consensus 102 ~t~~~~~g~~i~---~~~-----~vi~~~~~~~~~~~~q~~GR~~R~g~~g~~~~~~~~~~ 154 (159)
||+++++|+||+ .+. +||+++.|.+...|.|++||+||.|.+|.++.+++..|
T Consensus 527 ATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s~~~is~eD 587 (656)
T PRK12898 527 ATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSYEAILSLED 587 (656)
T ss_pred EccchhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEEEEEechhH
Confidence 999999999999 555 99999999999999999999999999999999998755
No 46
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.87 E-value=4.4e-21 Score=158.24 Aligned_cols=110 Identities=18% Similarity=0.275 Sum_probs=101.8
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhC--CCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCcccccccCCCcEEEEec
Q psy576 45 IEPPVLVFVQSKERAQELYNELIYD--GINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGRGIDFRTVRLVVNYD 122 (159)
Q Consensus 45 ~~~~~lif~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~g~~i~~~~~vi~~~ 122 (159)
.++++++||++.+.++.+++.|++. +.++..+||+|+.++|.+++++|.+|+.+|||||+++++|+|+|++++||+++
T Consensus 659 ~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi~~ 738 (926)
T TIGR00580 659 RGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIIIER 738 (926)
T ss_pred cCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEEec
Confidence 4678999999999999999999874 67899999999999999999999999999999999999999999999999998
Q ss_pred CCC-CHHHHHHHHhhccCCCCcceEEEEecCCC
Q psy576 123 FPS-SAISYIHRIGRAGRGGREGKAVTFFTKQD 154 (159)
Q Consensus 123 ~~~-~~~~~~q~~GR~~R~g~~g~~~~~~~~~~ 154 (159)
.|. ...+|.|++||+||.|..|.|++++.+.+
T Consensus 739 a~~~gls~l~Qr~GRvGR~g~~g~aill~~~~~ 771 (926)
T TIGR00580 739 ADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQK 771 (926)
T ss_pred CCCCCHHHHHHHhcCCCCCCCCeEEEEEECCcc
Confidence 864 67899999999999999999999987643
No 47
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.87 E-value=1.2e-21 Score=117.45 Aligned_cols=78 Identities=46% Similarity=0.767 Sum_probs=75.1
Q ss_pred HHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCcccccccCCCcEEEEecCCCCHHHHHHHHhhccCCC
Q psy576 64 NELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGRGIDFRTVRLVVNYDFPSSAISYIHRIGRAGRGG 141 (159)
Q Consensus 64 ~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g 141 (159)
+.|++.++++..+||+++..+|.++++.|++++..|||||+++++|+|+|.+++|+++++|++...|.|++||++|.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 357888999999999999999999999999999999999999999999999999999999999999999999999986
No 48
>KOG0347|consensus
Probab=99.87 E-value=1.8e-22 Score=154.19 Aligned_cols=114 Identities=30% Similarity=0.411 Sum_probs=109.1
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCcccccccCCCcEEEEecCC
Q psy576 45 IEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGRGIDFRTVRLVVNYDFP 124 (159)
Q Consensus 45 ~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~g~~i~~~~~vi~~~~~ 124 (159)
..++.||||++.+.+.+++.+|+..+++...+|+.|.+..|.+-++.|++....|||||+++++|+|||.+.|||||-+|
T Consensus 462 yPGrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVP 541 (731)
T KOG0347|consen 462 YPGRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVP 541 (731)
T ss_pred cCCceEEEechHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhhccCCCCcceEEEEecCCCcccc
Q psy576 125 SSAISYIHRIGRAGRGGREGKAVTFFTKQDAPLL 158 (159)
Q Consensus 125 ~~~~~~~q~~GR~~R~g~~g~~~~~~~~~~~~~~ 158 (159)
.+.+-|.||.||+.|.+..|..++++.+.|...|
T Consensus 542 rtseiYVHRSGRTARA~~~Gvsvml~~P~e~~~~ 575 (731)
T KOG0347|consen 542 RTSEIYVHRSGRTARANSEGVSVMLCGPQEVGPL 575 (731)
T ss_pred CccceeEecccccccccCCCeEEEEeChHHhHHH
Confidence 9999999999999999999999999999886544
No 49
>KOG0348|consensus
Probab=99.86 E-value=2.8e-21 Score=147.40 Aligned_cols=141 Identities=26% Similarity=0.461 Sum_probs=120.6
Q ss_pred hhhccceeeeecCCCCChHHHHHHHHh----cCCCCCEEEEecchHHHHHHHHHHHhC----------------------
Q psy576 16 VKSNLARMYRETEGAGSPVQAQDETIL----LGIEPPVLVFVQSKERAQELYNELIYD---------------------- 69 (159)
Q Consensus 16 ~~~~i~~~~~~~~~~~~k~~~l~~~~~----~~~~~~~lif~~~~~~~~~l~~~l~~~---------------------- 69 (159)
.++.+.+.|..+.. +-++-.|..++. .....++|||+.+.+.++.-+..+...
T Consensus 392 iPeqL~qry~vVPp-KLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~ 470 (708)
T KOG0348|consen 392 IPEQLLQRYTVVPP-KLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFM 470 (708)
T ss_pred CcHHhhhceEecCC-chhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhh
Confidence 46677788888877 555555555553 345568999999999999887776432
Q ss_pred CCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCcccccccCCCcEEEEecCCCCHHHHHHHHhhccCCCCcceEEEE
Q psy576 70 GINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGRGIDFRTVRLVVNYDFPSSAISYIHRIGRAGRGGREGKAVTF 149 (159)
Q Consensus 70 ~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~g~~~~~ 149 (159)
+.++..+||+|.+++|..+++.|..+.-.||+||+++++|+|+|++.+||.|++|.+.++|+||+||+.|.|..|.++.|
T Consensus 471 ~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG~kG~alLf 550 (708)
T KOG0348|consen 471 DLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEALLF 550 (708)
T ss_pred cceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCceEEE
Confidence 23478899999999999999999999888999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCccc
Q psy576 150 FTKQDAPL 157 (159)
Q Consensus 150 ~~~~~~~~ 157 (159)
..+.|.+.
T Consensus 551 L~P~Eaey 558 (708)
T KOG0348|consen 551 LLPSEAEY 558 (708)
T ss_pred ecccHHHH
Confidence 99988763
No 50
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.86 E-value=9.3e-21 Score=153.33 Aligned_cols=108 Identities=23% Similarity=0.378 Sum_probs=96.7
Q ss_pred CCCCEEEEecch--------HHHHHHHHHHHhC--CCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCcccccccCC
Q psy576 45 IEPPVLVFVQSK--------ERAQELYNELIYD--GINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGRGIDFRT 114 (159)
Q Consensus 45 ~~~~~lif~~~~--------~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~g~~i~~ 114 (159)
.+++++|||+.. ..+..+++.|.+. +.++..+||+|+.++|..++++|++|+.+|||||+++++|+|+|+
T Consensus 470 ~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~ 549 (681)
T PRK10917 470 KGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPN 549 (681)
T ss_pred cCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCC
Confidence 567899999854 4566777877665 468999999999999999999999999999999999999999999
Q ss_pred CcEEEEecCCC-CHHHHHHHHhhccCCCCcceEEEEecC
Q psy576 115 VRLVVNYDFPS-SAISYIHRIGRAGRGGREGKAVTFFTK 152 (159)
Q Consensus 115 ~~~vi~~~~~~-~~~~~~q~~GR~~R~g~~g~~~~~~~~ 152 (159)
+++||+++.|. ....+.|++||+||.|..|.|++++..
T Consensus 550 v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~~ 588 (681)
T PRK10917 550 ATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYKD 588 (681)
T ss_pred CcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEECC
Confidence 99999999886 578899999999999999999999963
No 51
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.86 E-value=4.6e-21 Score=154.91 Aligned_cols=122 Identities=23% Similarity=0.314 Sum_probs=109.7
Q ss_pred CChHHHHHHHHhc--CCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCccc
Q psy576 31 GSPVQAQDETILL--GIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGR 108 (159)
Q Consensus 31 ~~k~~~l~~~~~~--~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~ 108 (159)
..|...+.+.+.. ..+.|+||||+|.+.++.++..|.+.++++..+||.+..+++..+...+..| .|+|||+++++
T Consensus 411 ~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgR 488 (790)
T PRK09200 411 DEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGR 488 (790)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhc
Confidence 5688888887764 3678999999999999999999999999999999999888887777776666 69999999999
Q ss_pred cccc---CCCc-----EEEEecCCCCHHHHHHHHhhccCCCCcceEEEEecCCC
Q psy576 109 GIDF---RTVR-----LVVNYDFPSSAISYIHRIGRAGRGGREGKAVTFFTKQD 154 (159)
Q Consensus 109 g~~i---~~~~-----~vi~~~~~~~~~~~~q~~GR~~R~g~~g~~~~~~~~~~ 154 (159)
|+|| |.+. +||+++.|.+...|.|++||+||.|.+|.++.|++..|
T Consensus 489 G~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~~is~eD 542 (790)
T PRK09200 489 GTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFFISLED 542 (790)
T ss_pred CcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEEEEcchH
Confidence 9999 6888 99999999999999999999999999999999998655
No 52
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.86 E-value=8.8e-21 Score=159.30 Aligned_cols=109 Identities=17% Similarity=0.210 Sum_probs=99.4
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhC--CCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCcccccccCCCcEEEEec
Q psy576 45 IEPPVLVFVQSKERAQELYNELIYD--GINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGRGIDFRTVRLVVNYD 122 (159)
Q Consensus 45 ~~~~~lif~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~g~~i~~~~~vi~~~ 122 (159)
.+++++|||++.+.++.+++.|.+. +.++..+||+|+.++|.+++.+|++|+.+|||||+++++|+|+|++++||..+
T Consensus 808 r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~ 887 (1147)
T PRK10689 808 RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIER 887 (1147)
T ss_pred cCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEec
Confidence 4578999999999999999999876 67899999999999999999999999999999999999999999999999665
Q ss_pred CC-CCHHHHHHHHhhccCCCCcceEEEEecCC
Q psy576 123 FP-SSAISYIHRIGRAGRGGREGKAVTFFTKQ 153 (159)
Q Consensus 123 ~~-~~~~~~~q~~GR~~R~g~~g~~~~~~~~~ 153 (159)
.. .+...|.|++||+||.|..|.|++++...
T Consensus 888 ad~fglaq~~Qr~GRvGR~g~~g~a~ll~~~~ 919 (1147)
T PRK10689 888 ADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 919 (1147)
T ss_pred CCCCCHHHHHHHhhccCCCCCceEEEEEeCCC
Confidence 43 57788999999999999999999988654
No 53
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.86 E-value=3.7e-21 Score=157.19 Aligned_cols=117 Identities=16% Similarity=0.317 Sum_probs=102.9
Q ss_pred HHHHHhcCCCCCEEEEecchHHHHHHHHHHHh---CCCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCcccccccC
Q psy576 37 QDETILLGIEPPVLVFVQSKERAQELYNELIY---DGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGRGIDFR 113 (159)
Q Consensus 37 l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~---~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~g~~i~ 113 (159)
+..++.. ..+++|||+++.++++.+++.|.+ .++.+..+||+++.++|.++++.|.+|+.+|||||+++++|++||
T Consensus 201 l~~~l~~-~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp 279 (819)
T TIGR01970 201 VEHALAS-ETGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIE 279 (819)
T ss_pred HHHHHHh-cCCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhccccc
Confidence 3344433 467899999999999999999976 368899999999999999999999999999999999999999999
Q ss_pred CCcEEEEecCCC------------------CHHHHHHHHhhccCCCCcceEEEEecCCCc
Q psy576 114 TVRLVVNYDFPS------------------SAISYIHRIGRAGRGGREGKAVTFFTKQDA 155 (159)
Q Consensus 114 ~~~~vi~~~~~~------------------~~~~~~q~~GR~~R~g~~g~~~~~~~~~~~ 155 (159)
++++||+++.+. |.+++.||.||+||. .+|.|+.+++..+.
T Consensus 280 ~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~~~ 338 (819)
T TIGR01970 280 GIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL-EPGVCYRLWSEEQH 338 (819)
T ss_pred CceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC-CCCEEEEeCCHHHH
Confidence 999999998774 345699999999999 79999999987653
No 54
>KOG0351|consensus
Probab=99.86 E-value=2.3e-21 Score=158.85 Aligned_cols=146 Identities=22% Similarity=0.355 Sum_probs=126.6
Q ss_pred hHHhhhhccceeeeecCCCCChHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHH
Q psy576 12 LKRRVKSNLARMYRETEGAGSPVQAQDETILLGIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRS 91 (159)
Q Consensus 12 ~~~~~~~~i~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~ 91 (159)
..+..++++...+..-.....-...+............||||.++.+++.++..|+..+....++|++|++.+|..+..+
T Consensus 451 ~~sfnR~NL~yeV~~k~~~~~~~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~ 530 (941)
T KOG0351|consen 451 KSSFNRPNLKYEVSPKTDKDALLDILEESKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKA 530 (941)
T ss_pred cccCCCCCceEEEEeccCccchHHHHHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHH
Confidence 34455566666655555434444445555556677889999999999999999999999999999999999999999999
Q ss_pred HhcCCeeEEEEeCCcccccccCCCcEEEEecCCCCHHHHHHHHhhccCCCCcceEEEEecCCCccc
Q psy576 92 FRTGRIWILITTELLGRGIDFRTVRLVVNYDFPSSAISYIHRIGRAGRGGREGKAVTFFTKQDAPL 157 (159)
Q Consensus 92 f~~~~~~vlv~t~~~~~g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~g~~~~~~~~~~~~~ 157 (159)
|..++++|+|||=+.++|+|-|++..||||+.|++.+.|.|-+||+||.|....|++|+...|...
T Consensus 531 w~~~~~~VivATVAFGMGIdK~DVR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~ 596 (941)
T KOG0351|consen 531 WMSDKIRVIVATVAFGMGIDKPDVRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYADISE 596 (941)
T ss_pred HhcCCCeEEEEEeeccCCCCCCceeEEEECCCchhHHHHHHhccccCcCCCcceeEEecchhHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999887643
No 55
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.85 E-value=4.7e-21 Score=156.70 Aligned_cols=133 Identities=20% Similarity=0.312 Sum_probs=109.6
Q ss_pred cceeeeecCCCCChHH-----HHHHHHhcCCCCCEEEEecchHHHHHHHHHHHh---CCCceEEEecCCCHHHHHHHHHH
Q psy576 20 LARMYRETEGAGSPVQ-----AQDETILLGIEPPVLVFVQSKERAQELYNELIY---DGINVDVIHSDRTQKQRDNVVRS 91 (159)
Q Consensus 20 i~~~~~~~~~~~~k~~-----~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~---~~~~~~~~~~~~~~~~r~~~~~~ 91 (159)
+.++|..... ..+.+ .+..++.. ..+.+|||+++.++++.+++.|.+ .++.+..+||+++.+++.++++.
T Consensus 183 V~~~y~~~~~-~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~ 260 (812)
T PRK11664 183 VERRYQPLPA-HQRFDEAVARATAELLRQ-ESGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILP 260 (812)
T ss_pred ceEEeccCch-hhhHHHHHHHHHHHHHHh-CCCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhcc
Confidence 4455554443 33332 34444443 467899999999999999999986 46789999999999999999999
Q ss_pred HhcCCeeEEEEeCCcccccccCCCcEEEEecCCC------------------CHHHHHHHHhhccCCCCcceEEEEecCC
Q psy576 92 FRTGRIWILITTELLGRGIDFRTVRLVVNYDFPS------------------SAISYIHRIGRAGRGGREGKAVTFFTKQ 153 (159)
Q Consensus 92 f~~~~~~vlv~t~~~~~g~~i~~~~~vi~~~~~~------------------~~~~~~q~~GR~~R~g~~g~~~~~~~~~ 153 (159)
|.+|+.+|+|||+++++|++||++++||+++.+. |.++|.||.||+||. .+|.|+.+++..
T Consensus 261 ~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~-~~G~cyrL~t~~ 339 (812)
T PRK11664 261 APAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL-EPGICLHLYSKE 339 (812)
T ss_pred ccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEeechhhhhhhccccCCC-CCcEEEEecCHH
Confidence 9999999999999999999999999999987664 346899999999999 699999999876
Q ss_pred Cc
Q psy576 154 DA 155 (159)
Q Consensus 154 ~~ 155 (159)
+.
T Consensus 340 ~~ 341 (812)
T PRK11664 340 QA 341 (812)
T ss_pred HH
Confidence 43
No 56
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.85 E-value=2.5e-20 Score=149.85 Aligned_cols=108 Identities=22% Similarity=0.364 Sum_probs=96.4
Q ss_pred CCCCEEEEecch--------HHHHHHHHHHHhC--CCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCcccccccCC
Q psy576 45 IEPPVLVFVQSK--------ERAQELYNELIYD--GINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGRGIDFRT 114 (159)
Q Consensus 45 ~~~~~lif~~~~--------~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~g~~i~~ 114 (159)
.+++++|||+.. ..++.+++.|.+. +.++..+||+|++++|..+++.|++|+.+|||||+++++|+|+|+
T Consensus 447 ~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~ 526 (630)
T TIGR00643 447 KGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPN 526 (630)
T ss_pred hCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcccCC
Confidence 467899999865 4566777777653 678999999999999999999999999999999999999999999
Q ss_pred CcEEEEecCCC-CHHHHHHHHhhccCCCCcceEEEEecC
Q psy576 115 VRLVVNYDFPS-SAISYIHRIGRAGRGGREGKAVTFFTK 152 (159)
Q Consensus 115 ~~~vi~~~~~~-~~~~~~q~~GR~~R~g~~g~~~~~~~~ 152 (159)
+++||+++.|. ....|.|++||+||.|..|.|++++..
T Consensus 527 v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~~~ 565 (630)
T TIGR00643 527 ATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVYKN 565 (630)
T ss_pred CcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEECC
Confidence 99999999885 688999999999999999999999843
No 57
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.84 E-value=4e-20 Score=148.33 Aligned_cols=125 Identities=31% Similarity=0.409 Sum_probs=111.4
Q ss_pred CCChHHHHHHHHhc--CCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCcc
Q psy576 30 AGSPVQAQDETILL--GIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLG 107 (159)
Q Consensus 30 ~~~k~~~l~~~~~~--~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~ 107 (159)
..++++.|.+.+.. ..+.+++|||++++.++.+++.|.+.++++..+||+++..+|.++++.|++|++.|+|||+.++
T Consensus 424 ~~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~ 503 (655)
T TIGR00631 424 TDGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLR 503 (655)
T ss_pred ccchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhc
Confidence 34566666666653 3567899999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCcEEEEec-----CCCCHHHHHHHHhhccCCCCcceEEEEecCCCc
Q psy576 108 RGIDFRTVRLVVNYD-----FPSSAISYIHRIGRAGRGGREGKAVTFFTKQDA 155 (159)
Q Consensus 108 ~g~~i~~~~~vi~~~-----~~~~~~~~~q~~GR~~R~g~~g~~~~~~~~~~~ 155 (159)
+|+|+|++++|++++ .|.+..+|+|++||+||. ..|.+++|.+..+.
T Consensus 504 rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~ 555 (655)
T TIGR00631 504 EGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITD 555 (655)
T ss_pred CCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCH
Confidence 999999999999987 788999999999999998 58999999887653
No 58
>PRK02362 ski2-like helicase; Provisional
Probab=99.84 E-value=2.4e-20 Score=152.39 Aligned_cols=109 Identities=27% Similarity=0.413 Sum_probs=96.2
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhC------------------------------------CCceEEEecCCCHHHHHHH
Q psy576 45 IEPPVLVFVQSKERAQELYNELIYD------------------------------------GINVDVIHSDRTQKQRDNV 88 (159)
Q Consensus 45 ~~~~~lif~~~~~~~~~l~~~l~~~------------------------------------~~~~~~~~~~~~~~~r~~~ 88 (159)
.++++||||++++.++.++..|... ...+.++||++++.+|..+
T Consensus 242 ~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~v 321 (737)
T PRK02362 242 EGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRELV 321 (737)
T ss_pred cCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHHH
Confidence 5678999999999999888777532 1257899999999999999
Q ss_pred HHHHhcCCeeEEEEeCCcccccccCCCcEEEE----ec-----CCCCHHHHHHHHhhccCCCC--cceEEEEecCC
Q psy576 89 VRSFRTGRIWILITTELLGRGIDFRTVRLVVN----YD-----FPSSAISYIHRIGRAGRGGR--EGKAVTFFTKQ 153 (159)
Q Consensus 89 ~~~f~~~~~~vlv~t~~~~~g~~i~~~~~vi~----~~-----~~~~~~~~~q~~GR~~R~g~--~g~~~~~~~~~ 153 (159)
++.|++|.++|||||+++++|+|+|..++||+ |+ .|.+..+|.||+||+||.|. .|.++++....
T Consensus 322 e~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~~ 397 (737)
T PRK02362 322 EDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDPYGEAVLLAKSY 397 (737)
T ss_pred HHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCCCceEEEEecCc
Confidence 99999999999999999999999999999986 54 57899999999999999984 49999998764
No 59
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.84 E-value=3.5e-20 Score=148.90 Aligned_cols=122 Identities=21% Similarity=0.360 Sum_probs=107.9
Q ss_pred CChHHHHHHHHhc--CCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCccc
Q psy576 31 GSPVQAQDETILL--GIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGR 108 (159)
Q Consensus 31 ~~k~~~l~~~~~~--~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~ 108 (159)
..|...+.+.+.. ..+.|+||||+|.+.++.+...|.+.++++..+||.++.+++..+..+++.| .|+|||+++++
T Consensus 407 ~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgR 484 (762)
T TIGR03714 407 PEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGR 484 (762)
T ss_pred HHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCCChHHHHHHHHHcCCCC--eEEEEcccccc
Confidence 4688888777754 4678999999999999999999999999999999999988887776666666 69999999999
Q ss_pred ccccC---------CCcEEEEecCCCCHHHHHHHHhhccCCCCcceEEEEecCCCc
Q psy576 109 GIDFR---------TVRLVVNYDFPSSAISYIHRIGRAGRGGREGKAVTFFTKQDA 155 (159)
Q Consensus 109 g~~i~---------~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~g~~~~~~~~~~~ 155 (159)
|+||| .+.+|++++.|....+ .|++||+||.|.+|.++.|++..|.
T Consensus 485 GtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s~~~is~eD~ 539 (762)
T TIGR03714 485 GTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSSQFFVSLEDD 539 (762)
T ss_pred ccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeEEEEEccchh
Confidence 99999 8999999999987766 9999999999999999999987653
No 60
>PRK13766 Hef nuclease; Provisional
Probab=99.84 E-value=1.1e-19 Score=149.46 Aligned_cols=125 Identities=26% Similarity=0.427 Sum_probs=111.8
Q ss_pred CCCChHHHHHHHHhc----CCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecC--------CCHHHHHHHHHHHhcCC
Q psy576 29 GAGSPVQAQDETILL----GIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSD--------RTQKQRDNVVRSFRTGR 96 (159)
Q Consensus 29 ~~~~k~~~l~~~~~~----~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~--------~~~~~r~~~~~~f~~~~ 96 (159)
....|...|.+++.. ....++||||.+...++.+++.|...++++..+||. ++..+|..+++.|++|+
T Consensus 344 ~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~ 423 (773)
T PRK13766 344 IEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGE 423 (773)
T ss_pred cCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccccCCCCHHHHHHHHHHHHcCC
Confidence 345688888888754 467789999999999999999998888888899886 89999999999999999
Q ss_pred eeEEEEeCCcccccccCCCcEEEEecCCCCHHHHHHHHhhccCCCCcceEEEEecCCC
Q psy576 97 IWILITTELLGRGIDFRTVRLVVNYDFPSSAISYIHRIGRAGRGGREGKAVTFFTKQD 154 (159)
Q Consensus 97 ~~vlv~t~~~~~g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~g~~~~~~~~~~ 154 (159)
..+||+|+++++|+|+|.+++||+|++|++...|.||+||+||.|. |.+++++..+.
T Consensus 424 ~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~-~~v~~l~~~~t 480 (773)
T PRK13766 424 FNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEE-GRVVVLIAKGT 480 (773)
T ss_pred CCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCC-CEEEEEEeCCC
Confidence 9999999999999999999999999999999999999999999865 77888877554
No 61
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.83 E-value=1.1e-19 Score=142.79 Aligned_cols=115 Identities=17% Similarity=0.175 Sum_probs=100.4
Q ss_pred CChHHHHHHHHhc--CCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEe-CCcc
Q psy576 31 GSPVQAQDETILL--GIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITT-ELLG 107 (159)
Q Consensus 31 ~~k~~~l~~~~~~--~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t-~~~~ 107 (159)
..+...+.+++.. ..+.+++|||.+.++++.+++.|++.+.++..+||+++.++|..+++.|++++..||||| ++++
T Consensus 327 ~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~ 406 (501)
T PHA02558 327 TKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFS 406 (501)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceec
Confidence 3455555555432 245678999999999999999999999999999999999999999999999999999998 8999
Q ss_pred cccccCCCcEEEEecCCCCHHHHHHHHhhccCCCCcce
Q psy576 108 RGIDFRTVRLVVNYDFPSSAISYIHRIGRAGRGGREGK 145 (159)
Q Consensus 108 ~g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~g~ 145 (159)
+|+|+|++++||.+.++.+...|.||+||++|.+..+.
T Consensus 407 eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~ 444 (501)
T PHA02558 407 TGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKS 444 (501)
T ss_pred cccccccccEEEEecCCcchhhhhhhhhccccCCCCCc
Confidence 99999999999999999999999999999999885543
No 62
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.83 E-value=1.6e-19 Score=145.42 Aligned_cols=122 Identities=32% Similarity=0.383 Sum_probs=108.7
Q ss_pred CChHHHHHHHHhc--CCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCccc
Q psy576 31 GSPVQAQDETILL--GIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGR 108 (159)
Q Consensus 31 ~~k~~~l~~~~~~--~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~ 108 (159)
.+++..+.+.+.. ..+.+++|||++.+.++.+.+.|...++++..+||+++..+|..+++.|+.|+..|+|||+.+++
T Consensus 429 ~~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~r 508 (652)
T PRK05298 429 KGQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLRE 508 (652)
T ss_pred cccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhC
Confidence 4556666665543 24668999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCcEEEEecC-----CCCHHHHHHHHhhccCCCCcceEEEEecCC
Q psy576 109 GIDFRTVRLVVNYDF-----PSSAISYIHRIGRAGRGGREGKAVTFFTKQ 153 (159)
Q Consensus 109 g~~i~~~~~vi~~~~-----~~~~~~~~q~~GR~~R~g~~g~~~~~~~~~ 153 (159)
|+|+|++++|++++. |.+...|.||+||+||. ..|.++.|++..
T Consensus 509 Gfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~ 557 (652)
T PRK05298 509 GLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKI 557 (652)
T ss_pred CccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCC
Confidence 999999999998764 78999999999999997 689999999854
No 63
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.82 E-value=1.8e-19 Score=144.17 Aligned_cols=122 Identities=25% Similarity=0.289 Sum_probs=110.0
Q ss_pred CChHHHHHHHHh--cCCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCccc
Q psy576 31 GSPVQAQDETIL--LGIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGR 108 (159)
Q Consensus 31 ~~k~~~l~~~~~--~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~ 108 (159)
..|...+.+.+. ...+.|+||||++.+.++.++..|.+.+++...+|+. ..+|+..+..|..+...|+|||++++|
T Consensus 388 ~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgR 465 (745)
T TIGR00963 388 EEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGR 465 (745)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--hHHHHHHHHHhcCCCceEEEEeccccC
Confidence 456666666552 3467899999999999999999999999999999997 778999999999999999999999999
Q ss_pred ccccCC-------CcEEEEecCCCCHHHHHHHHhhccCCCCcceEEEEecCCC
Q psy576 109 GIDFRT-------VRLVVNYDFPSSAISYIHRIGRAGRGGREGKAVTFFTKQD 154 (159)
Q Consensus 109 g~~i~~-------~~~vi~~~~~~~~~~~~q~~GR~~R~g~~g~~~~~~~~~~ 154 (159)
|+||+. ..+||+++.|.+...|.|++||+||.|.+|.+..|++..|
T Consensus 466 GtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ls~eD 518 (745)
T TIGR00963 466 GTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLED 518 (745)
T ss_pred CcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEEEEeccH
Confidence 999998 5599999999999999999999999999999999998765
No 64
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.82 E-value=7.4e-20 Score=155.43 Aligned_cols=107 Identities=27% Similarity=0.332 Sum_probs=92.9
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhCC---------------------------------CceEEEecCCCHHHHHHHHHH
Q psy576 45 IEPPVLVFVQSKERAQELYNELIYDG---------------------------------INVDVIHSDRTQKQRDNVVRS 91 (159)
Q Consensus 45 ~~~~~lif~~~~~~~~~l~~~l~~~~---------------------------------~~~~~~~~~~~~~~r~~~~~~ 91 (159)
.+.++||||+|++.++.++..|++.. ..+..+||+++.++|..+++.
T Consensus 243 ~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~ 322 (1490)
T PRK09751 243 RHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQA 322 (1490)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHH
Confidence 45789999999999999999886531 125688999999999999999
Q ss_pred HhcCCeeEEEEeCCcccccccCCCcEEEEecCCCCHHHHHHHHhhccCCC-CcceEEEEec
Q psy576 92 FRTGRIWILITTELLGRGIDFRTVRLVVNYDFPSSAISYIHRIGRAGRGG-REGKAVTFFT 151 (159)
Q Consensus 92 f~~~~~~vlv~t~~~~~g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g-~~g~~~~~~~ 151 (159)
|++|++++||||+.+++|+|++++++||+++.|.+..+|+||+||+||.. ..+.++++..
T Consensus 323 fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gli~p~ 383 (1490)
T PRK09751 323 LKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGLFFPR 383 (1490)
T ss_pred HHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEEEEeC
Confidence 99999999999999999999999999999999999999999999999963 3344554433
No 65
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.81 E-value=3.3e-19 Score=143.13 Aligned_cols=123 Identities=15% Similarity=0.194 Sum_probs=104.5
Q ss_pred CCCChHHHHHHHHhcC--CCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcC-CeeEEEEeCC
Q psy576 29 GAGSPVQAQDETILLG--IEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTG-RIWILITTEL 105 (159)
Q Consensus 29 ~~~~k~~~l~~~~~~~--~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~-~~~vlv~t~~ 105 (159)
.+..|+..+..++... .++++||||.+...++.++..|. +.++||.++..+|..+++.|+.+ +.++||+|++
T Consensus 477 ~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~-----~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkV 551 (732)
T TIGR00603 477 MNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLG-----KPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKV 551 (732)
T ss_pred hChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcC-----CceEECCCCHHHHHHHHHHHHhCCCccEEEEecc
Confidence 3467888877777643 66799999999999998888773 46799999999999999999875 7899999999
Q ss_pred cccccccCCCcEEEEecCC-CCHHHHHHHHhhccCCCCcceE-------EEEecCCCcc
Q psy576 106 LGRGIDFRTVRLVVNYDFP-SSAISYIHRIGRAGRGGREGKA-------VTFFTKQDAP 156 (159)
Q Consensus 106 ~~~g~~i~~~~~vi~~~~~-~~~~~~~q~~GR~~R~g~~g~~-------~~~~~~~~~~ 156 (159)
+.+|+|+|++++||+++.| .+...|.||+||++|.+..|.+ +.+++.+..+
T Consensus 552 gdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E 610 (732)
T TIGR00603 552 GDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQE 610 (732)
T ss_pred cccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchH
Confidence 9999999999999999987 4999999999999999866654 6677666543
No 66
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.81 E-value=1.1e-19 Score=139.91 Aligned_cols=152 Identities=21% Similarity=0.306 Sum_probs=124.5
Q ss_pred cccccccchhhHHhhh---------hccceeeeecCCCCChHHHHHHHHhc--------CCCCCEEEEecchHHHHHHHH
Q psy576 2 AVDFNHTNPALKRRVK---------SNLARMYRETEGAGSPVQAQDETILL--------GIEPPVLVFVQSKERAQELYN 64 (159)
Q Consensus 2 ~~~~~~~~~~~~~~~~---------~~i~~~~~~~~~~~~k~~~l~~~~~~--------~~~~~~lif~~~~~~~~~l~~ 64 (159)
|||+.++....+..-. -.+......+..+.+|..++.++.+. +..+++|||++|++.+.+++.
T Consensus 379 SATVgNp~elA~~l~a~lV~y~~RPVplErHlvf~~~e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~ 458 (830)
T COG1202 379 SATVGNPEELAKKLGAKLVLYDERPVPLERHLVFARNESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELAD 458 (830)
T ss_pred EeecCChHHHHHHhCCeeEeecCCCCChhHeeeeecCchHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHH
Confidence 5666665443332222 24445666667678999999988862 345789999999999999999
Q ss_pred HHHhCCCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCcccccccCCCcEEEE---ecCCC-CHHHHHHHHhhccCC
Q psy576 65 ELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGRGIDFRTVRLVVN---YDFPS-SAISYIHRIGRAGRG 140 (159)
Q Consensus 65 ~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~g~~i~~~~~vi~---~~~~~-~~~~~~q~~GR~~R~ 140 (159)
.|...|+++.++|++++..+|..+..+|.++++.++|+|-+++.|+|+|.-.+|+- ++..| ++.+|.||.||+||.
T Consensus 459 ~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp 538 (830)
T COG1202 459 ALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVIFESLAMGIEWLSVREFQQMLGRAGRP 538 (830)
T ss_pred HhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCchHHHHHHHHHcccccCCHHHHHHHhcccCCC
Confidence 99999999999999999999999999999999999999999999999998886652 34444 899999999999999
Q ss_pred C--CcceEEEEecCC
Q psy576 141 G--REGKAVTFFTKQ 153 (159)
Q Consensus 141 g--~~g~~~~~~~~~ 153 (159)
+ ..|.+++++.++
T Consensus 539 ~yHdrGkVyllvepg 553 (830)
T COG1202 539 DYHDRGKVYLLVEPG 553 (830)
T ss_pred CcccCceEEEEecCC
Confidence 8 669898888765
No 67
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.81 E-value=5.7e-19 Score=142.39 Aligned_cols=122 Identities=25% Similarity=0.328 Sum_probs=108.6
Q ss_pred CChHHHHHHHHhc--CCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCccc
Q psy576 31 GSPVQAQDETILL--GIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGR 108 (159)
Q Consensus 31 ~~k~~~l~~~~~~--~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~ 108 (159)
..|...+.+.+.. ..+.|+||||.|+..++.++..|.+.+++...+|+++...++..+..+++.|. |+|||++++|
T Consensus 423 ~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGR 500 (796)
T PRK12906 423 DSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGR 500 (796)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccC
Confidence 4577777777743 36789999999999999999999999999999999988777777777777776 9999999999
Q ss_pred ccccC---CCc-----EEEEecCCCCHHHHHHHHhhccCCCCcceEEEEecCCC
Q psy576 109 GIDFR---TVR-----LVVNYDFPSSAISYIHRIGRAGRGGREGKAVTFFTKQD 154 (159)
Q Consensus 109 g~~i~---~~~-----~vi~~~~~~~~~~~~q~~GR~~R~g~~g~~~~~~~~~~ 154 (159)
|.||+ .+. +||+++.|.+...|.|+.||+||.|.+|.+..+++..|
T Consensus 501 GtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~~~~sleD 554 (796)
T PRK12906 501 GTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLED 554 (796)
T ss_pred CCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcceEEEEeccc
Confidence 99995 788 99999999999999999999999999999999988765
No 68
>PRK00254 ski2-like helicase; Provisional
Probab=99.80 E-value=8.7e-19 Score=142.96 Aligned_cols=116 Identities=23% Similarity=0.365 Sum_probs=95.1
Q ss_pred HHHHHhcCCCCCEEEEecchHHHHHHHHHHHhC---------------------------------CCceEEEecCCCHH
Q psy576 37 QDETILLGIEPPVLVFVQSKERAQELYNELIYD---------------------------------GINVDVIHSDRTQK 83 (159)
Q Consensus 37 l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~---------------------------------~~~~~~~~~~~~~~ 83 (159)
+.+.+. .++++||||+|++.++.++..+... ...+.++||+++++
T Consensus 231 ~~~~i~--~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~ 308 (720)
T PRK00254 231 VYDAVK--KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRT 308 (720)
T ss_pred HHHHHH--hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHH
Confidence 344444 4678999999999998776555321 12488999999999
Q ss_pred HHHHHHHHHhcCCeeEEEEeCCcccccccCCCcEEEE-------ecCC-CCHHHHHHHHhhccCCC--CcceEEEEecCC
Q psy576 84 QRDNVVRSFRTGRIWILITTELLGRGIDFRTVRLVVN-------YDFP-SSAISYIHRIGRAGRGG--REGKAVTFFTKQ 153 (159)
Q Consensus 84 ~r~~~~~~f~~~~~~vlv~t~~~~~g~~i~~~~~vi~-------~~~~-~~~~~~~q~~GR~~R~g--~~g~~~~~~~~~ 153 (159)
+|..+++.|++|.++|||||+++++|+|+|..++||. ++.| .+..+|.||+||+||.| ..|.++++....
T Consensus 309 eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~ 388 (720)
T PRK00254 309 ERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTE 388 (720)
T ss_pred HHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEecCc
Confidence 9999999999999999999999999999999999984 3333 36789999999999976 569999998765
Q ss_pred C
Q psy576 154 D 154 (159)
Q Consensus 154 ~ 154 (159)
+
T Consensus 389 ~ 389 (720)
T PRK00254 389 E 389 (720)
T ss_pred c
Confidence 4
No 69
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.79 E-value=9.1e-19 Score=105.22 Aligned_cols=81 Identities=43% Similarity=0.735 Sum_probs=76.8
Q ss_pred HHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCcccccccCCCcEEEEecCCCCHHHHHHHHhhccCC
Q psy576 61 ELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGRGIDFRTVRLVVNYDFPSSAISYIHRIGRAGRG 140 (159)
Q Consensus 61 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~ 140 (159)
.+++.|.+.+..+..+||++++++|.++++.|+++...++|+|+++++|+|+|.+++|+.+++|++...|.|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 46777888889999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q psy576 141 G 141 (159)
Q Consensus 141 g 141 (159)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 5
No 70
>KOG0354|consensus
Probab=99.79 E-value=3.5e-18 Score=135.86 Aligned_cols=124 Identities=29% Similarity=0.500 Sum_probs=104.4
Q ss_pred CCCCChHHHHHHHHh----cCCCCCEEEEecchHHHHHHHHHHHhC---CCceEEEec--------CCCHHHHHHHHHHH
Q psy576 28 EGAGSPVQAQDETIL----LGIEPPVLVFVQSKERAQELYNELIYD---GINVDVIHS--------DRTQKQRDNVVRSF 92 (159)
Q Consensus 28 ~~~~~k~~~l~~~~~----~~~~~~~lif~~~~~~~~~l~~~l~~~---~~~~~~~~~--------~~~~~~r~~~~~~f 92 (159)
.....|++.+.+.+. .....++||||.+++.|+.|..+|.+. +++...+-| +|+..++.+++++|
T Consensus 391 ~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~F 470 (746)
T KOG0354|consen 391 PKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKF 470 (746)
T ss_pred CccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHH
Confidence 334678888887775 345568999999999999999999732 344444444 68999999999999
Q ss_pred hcCCeeEEEEeCCcccccccCCCcEEEEecCCCCHHHHHHHHhhccCCCCcceEEEEecCC
Q psy576 93 RTGRIWILITTELLGRGIDFRTVRLVVNYDFPSSAISYIHRIGRAGRGGREGKAVTFFTKQ 153 (159)
Q Consensus 93 ~~~~~~vlv~t~~~~~g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~g~~~~~~~~~ 153 (159)
++|++.|||||+++++|+||+.++.||-||...++..+.||+|| ||. +.|.|+.+++..
T Consensus 471 r~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa-~ns~~vll~t~~ 529 (746)
T KOG0354|consen 471 RDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRA-RNSKCVLLTTGS 529 (746)
T ss_pred hCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-ccc-cCCeEEEEEcch
Confidence 99999999999999999999999999999999999999999999 998 567788777743
No 71
>PRK01172 ski2-like helicase; Provisional
Probab=99.78 E-value=3.7e-18 Score=138.55 Aligned_cols=109 Identities=28% Similarity=0.375 Sum_probs=91.6
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhC-----C--------------------CceEEEecCCCHHHHHHHHHHHhcCCeeE
Q psy576 45 IEPPVLVFVQSKERAQELYNELIYD-----G--------------------INVDVIHSDRTQKQRDNVVRSFRTGRIWI 99 (159)
Q Consensus 45 ~~~~~lif~~~~~~~~~l~~~l~~~-----~--------------------~~~~~~~~~~~~~~r~~~~~~f~~~~~~v 99 (159)
.++++||||++++.++.++..|.+. . ..+.++||+++.++|..+++.|++|.++|
T Consensus 235 ~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i~V 314 (674)
T PRK01172 235 DGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRYIKV 314 (674)
T ss_pred CCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCCCeE
Confidence 5678999999999999999887543 0 13788999999999999999999999999
Q ss_pred EEEeCCcccccccCCCcEEEEec---------CCCCHHHHHHHHhhccCCC--CcceEEEEecCCC
Q psy576 100 LITTELLGRGIDFRTVRLVVNYD---------FPSSAISYIHRIGRAGRGG--REGKAVTFFTKQD 154 (159)
Q Consensus 100 lv~t~~~~~g~~i~~~~~vi~~~---------~~~~~~~~~q~~GR~~R~g--~~g~~~~~~~~~~ 154 (159)
||||+++++|+|+|...+||. + .|.+..+|.||+||+||.| ..|.++++....+
T Consensus 315 LvaT~~la~Gvnipa~~VII~-~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~ 379 (674)
T PRK01172 315 IVATPTLAAGVNLPARLVIVR-DITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPA 379 (674)
T ss_pred EEecchhhccCCCcceEEEEc-CceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcc
Confidence 999999999999998765553 2 2458899999999999998 4577887766443
No 72
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.77 E-value=5.1e-18 Score=137.79 Aligned_cols=101 Identities=19% Similarity=0.293 Sum_probs=86.3
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHH-----HHHHHHhc----CC-------eeEEEEeCCccc
Q psy576 45 IEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRD-----NVVRSFRT----GR-------IWILITTELLGR 108 (159)
Q Consensus 45 ~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~-----~~~~~f~~----~~-------~~vlv~t~~~~~ 108 (159)
..+++||||+|++.++.+++.|.+.++ ..+||+|++.+|. .+++.|++ ++ ..|||||+++++
T Consensus 271 ~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaer 348 (844)
T TIGR02621 271 SGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEV 348 (844)
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhh
Confidence 457899999999999999999988775 8999999999999 77889987 43 679999999999
Q ss_pred ccccCCCcEEEEecCCCCHHHHHHHHhhccCCCCc-ceEEEEe
Q psy576 109 GIDFRTVRLVVNYDFPSSAISYIHRIGRAGRGGRE-GKAVTFF 150 (159)
Q Consensus 109 g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~-g~~~~~~ 150 (159)
|+||+. ++||+...| .++|+||+||+||.|.. +..+.++
T Consensus 349 GLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv 388 (844)
T TIGR02621 349 GVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVV 388 (844)
T ss_pred cccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEE
Confidence 999986 788886655 79999999999999964 3334444
No 73
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.77 E-value=4.1e-18 Score=138.92 Aligned_cols=122 Identities=25% Similarity=0.284 Sum_probs=108.9
Q ss_pred CChHHHHHHHHhc--CCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCccc
Q psy576 31 GSPVQAQDETILL--GIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGR 108 (159)
Q Consensus 31 ~~k~~~l~~~~~~--~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~ 108 (159)
..|...+.+.+.. ..+.|+||||.|++.++.++..|.+.++++..+|+ ...+|+..+.+|..+...|+|||++++|
T Consensus 581 ~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGR 658 (1025)
T PRK12900 581 REKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGR 658 (1025)
T ss_pred HHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCC
Confidence 4688888888853 36789999999999999999999999999999997 5789999999999999999999999999
Q ss_pred ccccC---CCc-----EEEEecCCCCHHHHHHHHhhccCCCCcceEEEEecCCC
Q psy576 109 GIDFR---TVR-----LVVNYDFPSSAISYIHRIGRAGRGGREGKAVTFFTKQD 154 (159)
Q Consensus 109 g~~i~---~~~-----~vi~~~~~~~~~~~~q~~GR~~R~g~~g~~~~~~~~~~ 154 (159)
|+||+ .+. +||....|.+...|.|++||+||.|.+|.+.+|++..|
T Consensus 659 GtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD 712 (1025)
T PRK12900 659 GTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLED 712 (1025)
T ss_pred CCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhH
Confidence 99999 443 45788888999999999999999999999999998765
No 74
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.75 E-value=1.9e-17 Score=133.95 Aligned_cols=117 Identities=24% Similarity=0.341 Sum_probs=102.2
Q ss_pred hHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHhCC-CceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCcccccc
Q psy576 33 PVQAQDETILLGIEPPVLVFVQSKERAQELYNELIYDG-INVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGRGID 111 (159)
Q Consensus 33 k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~g~~ 111 (159)
....+.++++. ...+|||+||+..++.++..|++.. ..+..+||.++.+.|.++.+.|++|+++.+|||+.++.|+|
T Consensus 242 ~~~~i~~~v~~--~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGID 319 (814)
T COG1201 242 LYERIAELVKK--HRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGID 319 (814)
T ss_pred HHHHHHHHHhh--cCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccc
Confidence 44455566664 4489999999999999999998885 78999999999999999999999999999999999999999
Q ss_pred cCCCcEEEEecCCCCHHHHHHHHhhccCCC-CcceEEEEec
Q psy576 112 FRTVRLVVNYDFPSSAISYIHRIGRAGRGG-REGKAVTFFT 151 (159)
Q Consensus 112 i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g-~~g~~~~~~~ 151 (159)
+.+++.||+++.|.+...++||+||+|+.- .....+++..
T Consensus 320 iG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~ 360 (814)
T COG1201 320 IGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAE 360 (814)
T ss_pred cCCceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEec
Confidence 999999999999999999999999999854 3344555443
No 75
>KOG0349|consensus
Probab=99.75 E-value=1e-17 Score=125.86 Aligned_cols=113 Identities=25% Similarity=0.467 Sum_probs=103.3
Q ss_pred cCCCCCEEEEecchHHHHHHHHHHHhC---CCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCcccccccCCCcEEE
Q psy576 43 LGIEPPVLVFVQSKERAQELYNELIYD---GINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGRGIDFRTVRLVV 119 (159)
Q Consensus 43 ~~~~~~~lif~~~~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~g~~i~~~~~vi 119 (159)
.....++||||.++..++.+.+++.+. .+.+.++||+..+.+|..-++.|++++.+.||||+++++|+||-.+..+|
T Consensus 502 ~h~mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~i 581 (725)
T KOG0349|consen 502 RHAMDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMI 581 (725)
T ss_pred hhccCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEE
Confidence 345679999999999999999999877 35789999999999999999999999999999999999999999999999
Q ss_pred EecCCCCHHHHHHHHhhccCCCCcceEEEEecCCCc
Q psy576 120 NYDFPSSAISYIHRIGRAGRGGREGKAVTFFTKQDA 155 (159)
Q Consensus 120 ~~~~~~~~~~~~q~~GR~~R~g~~g~~~~~~~~~~~ 155 (159)
+...|.+...|.+|+||+||..+-|.++.++.....
T Consensus 582 nvtlpd~k~nyvhrigrvgraermglaislvat~~e 617 (725)
T KOG0349|consen 582 NVTLPDDKTNYVHRIGRVGRAERMGLAISLVATVPE 617 (725)
T ss_pred EEecCcccchhhhhhhccchhhhcceeEEEeeccch
Confidence 999999999999999999999888988888765433
No 76
>KOG0352|consensus
Probab=99.74 E-value=5.9e-18 Score=126.71 Aligned_cols=113 Identities=23% Similarity=0.406 Sum_probs=107.7
Q ss_pred CCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCcccccccCCCcEEEEecCCC
Q psy576 46 EPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGRGIDFRTVRLVVNYDFPS 125 (159)
Q Consensus 46 ~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~g~~i~~~~~vi~~~~~~ 125 (159)
.+..||||.|++.++.++-.|...|++...+|.++...+|.++.++|.+++..|+++|...++|+|-|++..|||.++|.
T Consensus 255 ~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFViHW~~~q 334 (641)
T KOG0352|consen 255 TGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFVIHWSPSQ 334 (641)
T ss_pred CcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCcceeEEEecCchh
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhhccCCCCcceEEEEecCCCcccc
Q psy576 126 SAISYIHRIGRAGRGGREGKAVTFFTKQDAPLL 158 (159)
Q Consensus 126 ~~~~~~q~~GR~~R~g~~g~~~~~~~~~~~~~~ 158 (159)
+.+.|.|-.||+||.|...+|-.|+...|...+
T Consensus 335 n~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i 367 (641)
T KOG0352|consen 335 NLAGYYQESGRAGRDGKRSYCRLYYSRQDKNAL 367 (641)
T ss_pred hhHHHHHhccccccCCCccceeeeecccchHHH
Confidence 999999999999999999999999998886543
No 77
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.74 E-value=1.8e-17 Score=139.24 Aligned_cols=109 Identities=17% Similarity=0.295 Sum_probs=95.2
Q ss_pred CCCCCEEEEecchHHHHHHHHHHHhCCCc---eEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCcccccccCCCcEEEE
Q psy576 44 GIEPPVLVFVQSKERAQELYNELIYDGIN---VDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGRGIDFRTVRLVVN 120 (159)
Q Consensus 44 ~~~~~~lif~~~~~~~~~l~~~l~~~~~~---~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~g~~i~~~~~vi~ 120 (159)
...+.+|||+++..+++.+++.|.+.+.+ +..+||+++.+++.++++. .|..+|+|||+++++|+++|++++||+
T Consensus 284 ~~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID 361 (1294)
T PRK11131 284 EGPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVID 361 (1294)
T ss_pred CCCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEE
Confidence 35678999999999999999999887553 6789999999999999876 477899999999999999999999999
Q ss_pred ecC---------------C---CCHHHHHHHHhhccCCCCcceEEEEecCCCc
Q psy576 121 YDF---------------P---SSAISYIHRIGRAGRGGREGKAVTFFTKQDA 155 (159)
Q Consensus 121 ~~~---------------~---~~~~~~~q~~GR~~R~g~~g~~~~~~~~~~~ 155 (159)
++. | .|.++|.||.||+||. .+|.|+.+++..+.
T Consensus 362 ~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d~ 413 (1294)
T PRK11131 362 PGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDDF 413 (1294)
T ss_pred CCCccccccccccCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHHHH
Confidence 852 2 3568999999999999 68999999987643
No 78
>KOG0337|consensus
Probab=99.74 E-value=1.8e-18 Score=128.95 Aligned_cols=142 Identities=27% Similarity=0.384 Sum_probs=126.3
Q ss_pred HhhhhccceeeeecCCCCChHHHHHHHHhcC-CCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHH
Q psy576 14 RRVKSNLARMYRETEGAGSPVQAQDETILLG-IEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSF 92 (159)
Q Consensus 14 ~~~~~~i~~~~~~~~~~~~k~~~l~~~~~~~-~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f 92 (159)
+...+.+...|..+.. .+|...|..++... .+++.+|||.+..+++.+...|...+..+..++|.+++..|..-...|
T Consensus 229 tkise~lk~~f~~~~~-a~K~aaLl~il~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F 307 (529)
T KOG0337|consen 229 TKISELLKVRFFRVRK-AEKEAALLSILGGRIKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDF 307 (529)
T ss_pred hhcchhhhhheeeecc-HHHHHHHHHHHhccccccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccc
Confidence 4555666666666666 67888777777643 345799999999999999999999999999999999999999999999
Q ss_pred hcCCeeEEEEeCCcccccccCCCcEEEEecCCCCHHHHHHHHhhccCCCCcceEEEEecCCCcc
Q psy576 93 RTGRIWILITTELLGRGIDFRTVRLVVNYDFPSSAISYIHRIGRAGRGGREGKAVTFFTKQDAP 156 (159)
Q Consensus 93 ~~~~~~vlv~t~~~~~g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~g~~~~~~~~~~~~ 156 (159)
..++..+||.|+.+++|+|||..+.||||+.|.+...|.+|+||+.|.|+.|..|-++.+.|..
T Consensus 308 ~~~k~~~lvvTdvaaRG~diplldnvinyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~ 371 (529)
T KOG0337|consen 308 RGRKTSILVVTDVAARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDP 371 (529)
T ss_pred cCCccceEEEehhhhccCCCccccccccccCCCCCceEEEEecchhhccccceEEEEEecccch
Confidence 9999999999999999999999999999999999999999999999999999999999887764
No 79
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.71 E-value=1.7e-16 Score=131.87 Aligned_cols=120 Identities=23% Similarity=0.301 Sum_probs=106.9
Q ss_pred CChHHHHHHHHhc--CCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcC---CeeEEEEeCC
Q psy576 31 GSPVQAQDETILL--GIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTG---RIWILITTEL 105 (159)
Q Consensus 31 ~~k~~~l~~~~~~--~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~---~~~vlv~t~~ 105 (159)
..|+..|.+++.. ..+.++|||+.....++.|..+|...++....++|+++..+|..+++.|++. ...+|++|.+
T Consensus 470 SgKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrA 549 (1033)
T PLN03142 470 SGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRA 549 (1033)
T ss_pred hhHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccc
Confidence 5788888887763 3567999999999999999999999999999999999999999999999863 3467889999
Q ss_pred cccccccCCCcEEEEecCCCCHHHHHHHHhhccCCCCcceEEEEe
Q psy576 106 LGRGIDFRTVRLVVNYDFPSSAISYIHRIGRAGRGGREGKAVTFF 150 (159)
Q Consensus 106 ~~~g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~g~~~~~~ 150 (159)
++.|+|+..+++||+|+++|++....|++||++|.|+...|.+|.
T Consensus 550 GGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyR 594 (1033)
T PLN03142 550 GGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFR 594 (1033)
T ss_pred cccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEE
Confidence 999999999999999999999999999999999999887766553
No 80
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.71 E-value=2.1e-16 Score=124.36 Aligned_cols=135 Identities=22% Similarity=0.296 Sum_probs=109.7
Q ss_pred hccceeeeecCCCCChHHHHHHHHhcCCCCCEEEEecchH--------HHHHHHHHHHhC--CCceEEEecCCCHHHHHH
Q psy576 18 SNLARMYRETEGAGSPVQAQDETILLGIEPPVLVFVQSKE--------RAQELYNELIYD--GINVDVIHSDRTQKQRDN 87 (159)
Q Consensus 18 ~~i~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lif~~~~~--------~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~ 87 (159)
..|.-++......+.-.+.+.+.+. .++++.+.|+=.+ .+.++++.|+.. +.++..+||+|++.++..
T Consensus 447 kpI~T~~i~~~~~~~v~e~i~~ei~--~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~ 524 (677)
T COG1200 447 KPITTVVIPHERRPEVYERIREEIA--KGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDA 524 (677)
T ss_pred CceEEEEeccccHHHHHHHHHHHHH--cCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHH
Confidence 4555565555544445555555555 5678888888543 556777777743 567999999999999999
Q ss_pred HHHHHhcCCeeEEEEeCCcccccccCCCcEEEEecCC-CCHHHHHHHHhhccCCCCcceEEEEecCCC
Q psy576 88 VVRSFRTGRIWILITTELLGRGIDFRTVRLVVNYDFP-SSAISYIHRIGRAGRGGREGKAVTFFTKQD 154 (159)
Q Consensus 88 ~~~~f~~~~~~vlv~t~~~~~g~~i~~~~~vi~~~~~-~~~~~~~q~~GR~~R~g~~g~~~~~~~~~~ 154 (159)
+++.|++|+.+|||||.+.+-|+|+|+++++++.+.- .-.+++.|..||+||.+..+.|+.++++..
T Consensus 525 vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~ 592 (677)
T COG1200 525 VMEAFKEGEIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPL 592 (677)
T ss_pred HHHHHHcCCCcEEEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCC
Confidence 9999999999999999999999999999998887644 578999999999999999999999998775
No 81
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.70 E-value=1e-16 Score=135.10 Aligned_cols=108 Identities=16% Similarity=0.258 Sum_probs=93.3
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhCC---CceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCcccccccCCCcEEEEe
Q psy576 45 IEPPVLVFVQSKERAQELYNELIYDG---INVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGRGIDFRTVRLVVNY 121 (159)
Q Consensus 45 ~~~~~lif~~~~~~~~~l~~~l~~~~---~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~g~~i~~~~~vi~~ 121 (159)
..+.+|||+++..+++.+.+.|.+.+ ..+..+||+++.+++.++++.+ +..+|+|||+++++|++||++++||++
T Consensus 278 ~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDs 355 (1283)
T TIGR01967 278 GPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDT 355 (1283)
T ss_pred CCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeC
Confidence 45789999999999999999998763 4588999999999999886543 346899999999999999999999998
Q ss_pred cCC------------------CCHHHHHHHHhhccCCCCcceEEEEecCCCc
Q psy576 122 DFP------------------SSAISYIHRIGRAGRGGREGKAVTFFTKQDA 155 (159)
Q Consensus 122 ~~~------------------~~~~~~~q~~GR~~R~g~~g~~~~~~~~~~~ 155 (159)
+.+ -|.++|.||.||+||.| +|.|+.+++..+.
T Consensus 356 Gl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~~ 406 (1283)
T TIGR01967 356 GTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA-PGICIRLYSEEDF 406 (1283)
T ss_pred CCccccccccccCccccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHHHH
Confidence 743 36689999999999997 9999999986543
No 82
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.68 E-value=1.4e-15 Score=117.93 Aligned_cols=109 Identities=26% Similarity=0.433 Sum_probs=99.2
Q ss_pred CChHHHHHHHHhcC-CCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCcccc
Q psy576 31 GSPVQAQDETILLG-IEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGRG 109 (159)
Q Consensus 31 ~~k~~~l~~~~~~~-~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~g 109 (159)
+.+...+..++... ...+++|||.+..++.+++..+...+. +..+++..+..+|..+++.|+.|++.+|+++.++.+|
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl~EG 345 (442)
T COG1061 267 ERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTGGIKVLVTVKVLDEG 345 (442)
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcCCCCEEEEeeeccce
Confidence 45666666666654 467899999999999999999987776 7899999999999999999999999999999999999
Q ss_pred cccCCCcEEEEecCCCCHHHHHHHHhhccCC
Q psy576 110 IDFRTVRLVVNYDFPSSAISYIHRIGRAGRG 140 (159)
Q Consensus 110 ~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~ 140 (159)
+|+|+++++|...++.|...|.||+||..|.
T Consensus 346 vDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~ 376 (442)
T COG1061 346 VDIPDADVLIILRPTGSRRLFIQRLGRGLRP 376 (442)
T ss_pred ecCCCCcEEEEeCCCCcHHHHHHHhhhhccC
Confidence 9999999999999999999999999999993
No 83
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.65 E-value=1.5e-15 Score=114.89 Aligned_cols=85 Identities=21% Similarity=0.358 Sum_probs=73.3
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhCC--CceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCcccccccCCCcEEEEec
Q psy576 45 IEPPVLVFVQSKERAQELYNELIYDG--INVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGRGIDFRTVRLVVNYD 122 (159)
Q Consensus 45 ~~~~~lif~~~~~~~~~l~~~l~~~~--~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~g~~i~~~~~vi~~~ 122 (159)
.++++||||++.+.++.++..|++.+ ..+..+||.++..+|.+. ++..|||||+++++|+|+|.. +|| ++
T Consensus 271 ~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~------~~~~iLVaTdv~~rGiDi~~~-~vi-~~ 342 (357)
T TIGR03158 271 PGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERA------MQFDILLGTSTVDVGVDFKRD-WLI-FS 342 (357)
T ss_pred CCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHh------ccCCEEEEecHHhcccCCCCc-eEE-EC
Confidence 45789999999999999999998753 578889999999888654 378899999999999999986 455 44
Q ss_pred CCCCHHHHHHHHhhcc
Q psy576 123 FPSSAISYIHRIGRAG 138 (159)
Q Consensus 123 ~~~~~~~~~q~~GR~~ 138 (159)
|.+..+|.||+||+|
T Consensus 343 -p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 343 -ARDAAAFWQRLGRLG 357 (357)
T ss_pred -CCCHHHHhhhcccCC
Confidence 889999999999986
No 84
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.64 E-value=4.6e-15 Score=122.55 Aligned_cols=111 Identities=17% Similarity=0.219 Sum_probs=101.1
Q ss_pred CCCCCEEEEecchHHHHHHHHHHHhC--CCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCcccccccCCCcEEEEe
Q psy576 44 GIEPPVLVFVQSKERAQELYNELIYD--GINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGRGIDFRTVRLVVNY 121 (159)
Q Consensus 44 ~~~~~~lif~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~g~~i~~~~~vi~~ 121 (159)
.+++++-..++.+++.+.+.+.|++. ..++.+.||.|+..+-++++..|.+|+.+|||||...+.|+|||+++.+|..
T Consensus 801 ~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe 880 (1139)
T COG1197 801 LRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIE 880 (1139)
T ss_pred hcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEe
Confidence 46789988999999999999999876 6689999999999999999999999999999999999999999999988876
Q ss_pred cCC-CCHHHHHHHHhhccCCCCcceEEEEecCCC
Q psy576 122 DFP-SSAISYIHRIGRAGRGGREGKAVTFFTKQD 154 (159)
Q Consensus 122 ~~~-~~~~~~~q~~GR~~R~g~~g~~~~~~~~~~ 154 (159)
+.. .-.+++.|..||+||....+.|+.++.+.+
T Consensus 881 ~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~k 914 (1139)
T COG1197 881 RADKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQK 914 (1139)
T ss_pred ccccccHHHHHHhccccCCccceEEEEEeecCcc
Confidence 554 478999999999999999999999998654
No 85
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.64 E-value=3.8e-15 Score=121.00 Aligned_cols=122 Identities=25% Similarity=0.258 Sum_probs=108.4
Q ss_pred CChHHHHHHHHhc--CCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCccc
Q psy576 31 GSPVQAQDETILL--GIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGR 108 (159)
Q Consensus 31 ~~k~~~l~~~~~~--~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~ 108 (159)
..|...+.+.+.. ..+.|+||||.|++.++.++..|.+.++++..+|+. ..+|+..+.+|..+...|+|||++++|
T Consensus 413 ~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak--q~eREa~Iia~Ag~~g~VtIATNmAGR 490 (830)
T PRK12904 413 KEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK--NHEREAEIIAQAGRPGAVTIATNMAGR 490 (830)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc--hHHHHHHHHHhcCCCceEEEecccccC
Confidence 5688888888854 567899999999999999999999999999999995 778999999999999999999999999
Q ss_pred ccccCCC--------------------------------------cEEEEecCCCCHHHHHHHHhhccCCCCcceEEEEe
Q psy576 109 GIDFRTV--------------------------------------RLVVNYDFPSSAISYIHRIGRAGRGGREGKAVTFF 150 (159)
Q Consensus 109 g~~i~~~--------------------------------------~~vi~~~~~~~~~~~~q~~GR~~R~g~~g~~~~~~ 150 (159)
|+||+-- -+||....+.|..---|..||+||.|.+|.+.+|+
T Consensus 491 GtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpGss~f~l 570 (830)
T PRK12904 491 GTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYL 570 (830)
T ss_pred CcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCCCceeEEE
Confidence 9999753 26777778889988999999999999999999988
Q ss_pred cCCC
Q psy576 151 TKQD 154 (159)
Q Consensus 151 ~~~~ 154 (159)
+-.|
T Consensus 571 SleD 574 (830)
T PRK12904 571 SLED 574 (830)
T ss_pred EcCc
Confidence 8654
No 86
>KOG0353|consensus
Probab=99.64 E-value=6.3e-16 Score=114.79 Aligned_cols=141 Identities=21% Similarity=0.352 Sum_probs=119.8
Q ss_pred hhhhccceeeeecCCC-CChHHHHHHHHhc-CCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHH
Q psy576 15 RVKSNLARMYRETEGA-GSPVQAQDETILL-GIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSF 92 (159)
Q Consensus 15 ~~~~~i~~~~~~~~~~-~~k~~~l~~~~~~-~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f 92 (159)
..++++.+.++..++. ++-.+-+.++++. ..++..||||-+.+.++.++..|+..|+....+|..|.|.++..+-+.|
T Consensus 284 fnr~nl~yev~qkp~n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w 363 (695)
T KOG0353|consen 284 FNRPNLKYEVRQKPGNEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGW 363 (695)
T ss_pred cCCCCceeEeeeCCCChHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccc
Confidence 4455666555555443 3344445555553 3456689999999999999999999999999999999999999999999
Q ss_pred hcCCeeEEEEeCCcccccccCCCcEEEEecCCCCHHHHHH----------------------------------------
Q psy576 93 RTGRIWILITTELLGRGIDFRTVRLVVNYDFPSSAISYIH---------------------------------------- 132 (159)
Q Consensus 93 ~~~~~~vlv~t~~~~~g~~i~~~~~vi~~~~~~~~~~~~q---------------------------------------- 132 (159)
..|+++|+|+|-..++|+|-|+++.||+.+.|++.+.|.|
T Consensus 364 ~a~eiqvivatvafgmgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavf 443 (695)
T KOG0353|consen 364 IAGEIQVIVATVAFGMGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVF 443 (695)
T ss_pred cccceEEEEEEeeecccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeee
Confidence 9999999999999999999999999999999999999999
Q ss_pred ---HHhhccCCCCcceEEEEecCCCc
Q psy576 133 ---RIGRAGRGGREGKAVTFFTKQDA 155 (159)
Q Consensus 133 ---~~GR~~R~g~~g~~~~~~~~~~~ 155 (159)
-.||+||.+.+..|+.|+.-.|+
T Consensus 444 sekesgragrd~~~a~cilyy~~~di 469 (695)
T KOG0353|consen 444 SEKESGRAGRDDMKADCILYYGFADI 469 (695)
T ss_pred cchhccccccCCCcccEEEEechHHH
Confidence 67999999999999999876554
No 87
>PRK09694 helicase Cas3; Provisional
Probab=99.63 E-value=1.2e-14 Score=119.72 Aligned_cols=95 Identities=24% Similarity=0.423 Sum_probs=81.5
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhCC---CceEEEecCCCHHHHH----HHHHHH-hcCC---eeEEEEeCCcccccccC
Q psy576 45 IEPPVLVFVQSKERAQELYNELIYDG---INVDVIHSDRTQKQRD----NVVRSF-RTGR---IWILITTELLGRGIDFR 113 (159)
Q Consensus 45 ~~~~~lif~~~~~~~~~l~~~l~~~~---~~~~~~~~~~~~~~r~----~~~~~f-~~~~---~~vlv~t~~~~~g~~i~ 113 (159)
.+++++|||+|++.+.++++.|++.. .++..+||+++..+|. ++++.| ++++ ..|||+|+++++|+|+
T Consensus 559 ~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI- 637 (878)
T PRK09694 559 AGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL- 637 (878)
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-
Confidence 56789999999999999999998753 5789999999999884 566777 5555 4799999999999999
Q ss_pred CCcEEEEecCCCCHHHHHHHHhhccCCCC
Q psy576 114 TVRLVVNYDFPSSAISYIHRIGRAGRGGR 142 (159)
Q Consensus 114 ~~~~vi~~~~~~~~~~~~q~~GR~~R~g~ 142 (159)
+++++|....| .+.++||+||++|.+.
T Consensus 638 d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 638 DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 57988887666 7899999999999874
No 88
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.62 E-value=6.6e-15 Score=107.79 Aligned_cols=117 Identities=26% Similarity=0.383 Sum_probs=96.8
Q ss_pred HHHHHHhcC--CCCCEEEEecchHHHHHHHHHHHhC--CCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCcccccc
Q psy576 36 AQDETILLG--IEPPVLVFVQSKERAQELYNELIYD--GINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGRGID 111 (159)
Q Consensus 36 ~l~~~~~~~--~~~~~lif~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~g~~ 111 (159)
.|..+++.. .+.|++||+++.+.++.++..|++. ...+..+|+. ...|.+..++|++|++.+||+|..+++|+.
T Consensus 293 kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVT 370 (441)
T COG4098 293 KLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVT 370 (441)
T ss_pred HHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccc
Confidence 467777753 4479999999999999999999654 4466889984 678999999999999999999999999999
Q ss_pred cCCCcEEEEec--CCCCHHHHHHHHhhccCCC--CcceEEEEecCCC
Q psy576 112 FRTVRLVVNYD--FPSSAISYIHRIGRAGRGG--REGKAVTFFTKQD 154 (159)
Q Consensus 112 i~~~~~vi~~~--~~~~~~~~~q~~GR~~R~g--~~g~~~~~~~~~~ 154 (159)
+|.+++.+.-. .-.+.+.+.|..||+||.- +.|.++.|.....
T Consensus 371 fp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~~~PtGdv~FFH~G~s 417 (441)
T COG4098 371 FPNVDVFVLGAEHRVFTESALVQIAGRVGRSLERPTGDVLFFHYGKS 417 (441)
T ss_pred cccceEEEecCCcccccHHHHHHHhhhccCCCcCCCCcEEEEeccch
Confidence 99999877643 3368999999999999966 5687777765443
No 89
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.61 E-value=6.4e-15 Score=120.03 Aligned_cols=110 Identities=29% Similarity=0.476 Sum_probs=93.0
Q ss_pred CCCCEEEEecchHHHHHHHHHHHh----C---------------------------------CCceEEEecCCCHHHHHH
Q psy576 45 IEPPVLVFVQSKERAQELYNELIY----D---------------------------------GINVDVIHSDRTQKQRDN 87 (159)
Q Consensus 45 ~~~~~lif~~~~~~~~~l~~~l~~----~---------------------------------~~~~~~~~~~~~~~~r~~ 87 (159)
.+++++|||+|++.+...+..+.. . ...+.++|++++.+.|..
T Consensus 252 ~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~ 331 (766)
T COG1204 252 EGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQL 331 (766)
T ss_pred cCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHHH
Confidence 567999999999999988887762 0 011689999999999999
Q ss_pred HHHHHhcCCeeEEEEeCCcccccccCCCcEEEE----ec-----CCCCHHHHHHHHhhccCCC--CcceEEEEecCCC
Q psy576 88 VVRSFRTGRIWILITTELLGRGIDFRTVRLVVN----YD-----FPSSAISYIHRIGRAGRGG--REGKAVTFFTKQD 154 (159)
Q Consensus 88 ~~~~f~~~~~~vlv~t~~~~~g~~i~~~~~vi~----~~-----~~~~~~~~~q~~GR~~R~g--~~g~~~~~~~~~~ 154 (159)
+.+.|+.|.++||+||+++++|+|+|.-++||- ++ .+-+.-++.||.||+||.| ..|..+++....+
T Consensus 332 vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~~~~~ 409 (766)
T COG1204 332 VEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGEAIILATSHD 409 (766)
T ss_pred HHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCCcEEEEecCcc
Confidence 999999999999999999999999999998873 45 3457899999999999999 6688888885443
No 90
>PRK09401 reverse gyrase; Reviewed
Probab=99.60 E-value=6.2e-15 Score=124.74 Aligned_cols=113 Identities=26% Similarity=0.302 Sum_probs=96.1
Q ss_pred hccceeeeecCCCCChHHHHHHHHhcCCCCCEEEEecchHH---HHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhc
Q psy576 18 SNLARMYRETEGAGSPVQAQDETILLGIEPPVLVFVQSKER---AQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRT 94 (159)
Q Consensus 18 ~~i~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lif~~~~~~---~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 94 (159)
.++.+.|.... .+...|.+++... +.++||||++... ++.++..|...|+++..+||++ .+.+++|++
T Consensus 304 rnI~~~yi~~~---~k~~~L~~ll~~l-~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F~~ 374 (1176)
T PRK09401 304 RNIVDSYIVDE---DSVEKLVELVKRL-GDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKFEE 374 (1176)
T ss_pred CCceEEEEEcc---cHHHHHHHHHHhc-CCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHHHC
Confidence 45666666554 5777888888764 4689999999777 9999999999999999999998 234599999
Q ss_pred CCeeEEEE----eCCcccccccCC-CcEEEEecCCC------CHHHHHHHHhhccC
Q psy576 95 GRIWILIT----TELLGRGIDFRT-VRLVVNYDFPS------SAISYIHRIGRAGR 139 (159)
Q Consensus 95 ~~~~vlv~----t~~~~~g~~i~~-~~~vi~~~~~~------~~~~~~q~~GR~~R 139 (159)
|+.+|||| |+++++|+|+|+ +++|||++.|. ....+.+++||+..
T Consensus 375 G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~ 430 (1176)
T PRK09401 375 GEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLS 430 (1176)
T ss_pred CCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHHh
Confidence 99999999 689999999999 89999999998 66788999999864
No 91
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.60 E-value=2.3e-14 Score=116.92 Aligned_cols=122 Identities=25% Similarity=0.266 Sum_probs=105.6
Q ss_pred CChHHHHHHHHh--cCCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCccc
Q psy576 31 GSPVQAQDETIL--LGIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGR 108 (159)
Q Consensus 31 ~~k~~~l~~~~~--~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~ 108 (159)
..|...+.+.+. ...+.|+||||.|++.++.++..|.+.+++...+|+.++..++..+.++|+.|. |+|||+++++
T Consensus 427 ~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGR 504 (896)
T PRK13104 427 ADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGR 504 (896)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccC
Confidence 457766666663 346789999999999999999999999999999999999999999999999995 9999999999
Q ss_pred ccccCCC--------------------------------------cEEEEecCCCCHHHHHHHHhhccCCCCcceEEEEe
Q psy576 109 GIDFRTV--------------------------------------RLVVNYDFPSSAISYIHRIGRAGRGGREGKAVTFF 150 (159)
Q Consensus 109 g~~i~~~--------------------------------------~~vi~~~~~~~~~~~~q~~GR~~R~g~~g~~~~~~ 150 (159)
|+||.-- -+||-...+.|..---|..||+||.|.+|.+-+|+
T Consensus 505 GtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~l 584 (896)
T PRK13104 505 GTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYL 584 (896)
T ss_pred CcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEE
Confidence 9999621 26776677788888899999999999999999888
Q ss_pred cCCC
Q psy576 151 TKQD 154 (159)
Q Consensus 151 ~~~~ 154 (159)
+-.|
T Consensus 585 SleD 588 (896)
T PRK13104 585 SLED 588 (896)
T ss_pred EcCc
Confidence 7554
No 92
>PRK14701 reverse gyrase; Provisional
Probab=99.59 E-value=6.7e-15 Score=127.25 Aligned_cols=121 Identities=23% Similarity=0.280 Sum_probs=98.4
Q ss_pred hccceeeeecCCCCChHHHHHHHHhcCCCCCEEEEecchHH---HHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhc
Q psy576 18 SNLARMYRETEGAGSPVQAQDETILLGIEPPVLVFVQSKER---AQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRT 94 (159)
Q Consensus 18 ~~i~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lif~~~~~~---~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 94 (159)
.++.+.|...+. ..+ ..+.+++... +.++||||++.+. ++++++.|.+.|+++..+||+ |.+.++.|++
T Consensus 305 r~i~~~yi~~~~-~~k-~~L~~ll~~~-g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~~~l~~F~~ 376 (1638)
T PRK14701 305 RNIVDVYLNPEK-IIK-EHVRELLKKL-GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-----NKKGFDLFEE 376 (1638)
T ss_pred CCcEEEEEECCH-HHH-HHHHHHHHhC-CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-----HHHHHHHHHc
Confidence 356666665543 233 4677777664 5689999999875 589999999999999999994 8889999999
Q ss_pred CCeeEEEEe----CCcccccccCC-CcEEEEecCCC---CHHHHHHHH-------------hhccCCCCcceE
Q psy576 95 GRIWILITT----ELLGRGIDFRT-VRLVVNYDFPS---SAISYIHRI-------------GRAGRGGREGKA 146 (159)
Q Consensus 95 ~~~~vlv~t----~~~~~g~~i~~-~~~vi~~~~~~---~~~~~~q~~-------------GR~~R~g~~g~~ 146 (159)
|+.+||||| +++++|+|+|+ +++||++++|+ +...|.|-. ||++|.|....+
T Consensus 377 G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~ 449 (1638)
T PRK14701 377 GEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIPIEG 449 (1638)
T ss_pred CCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCcchh
Confidence 999999999 48999999999 99999999998 777665544 999999866554
No 93
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.56 E-value=6e-14 Score=114.31 Aligned_cols=122 Identities=25% Similarity=0.293 Sum_probs=105.4
Q ss_pred CChHHHHHHHHh--cCCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCccc
Q psy576 31 GSPVQAQDETIL--LGIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGR 108 (159)
Q Consensus 31 ~~k~~~l~~~~~--~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~ 108 (159)
..|...+.+.+. ...+.|+||||.|.+.++.++..|...+++...+|+.++..++..+.++|+.|. |+|||+++++
T Consensus 432 ~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGR 509 (908)
T PRK13107 432 DEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGR 509 (908)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCC
Confidence 456666655554 246789999999999999999999999999999999999999999999999999 9999999999
Q ss_pred ccccCC-------------------------------------CcEEEEecCCCCHHHHHHHHhhccCCCCcceEEEEec
Q psy576 109 GIDFRT-------------------------------------VRLVVNYDFPSSAISYIHRIGRAGRGGREGKAVTFFT 151 (159)
Q Consensus 109 g~~i~~-------------------------------------~~~vi~~~~~~~~~~~~q~~GR~~R~g~~g~~~~~~~ 151 (159)
|.||.- --+||-...+.|..---|..||+||.|.+|.+.+|++
T Consensus 510 GTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lS 589 (908)
T PRK13107 510 GTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLS 589 (908)
T ss_pred CcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEE
Confidence 999962 1267777778888888999999999999999998887
Q ss_pred CCC
Q psy576 152 KQD 154 (159)
Q Consensus 152 ~~~ 154 (159)
-.|
T Consensus 590 lED 592 (908)
T PRK13107 590 MED 592 (908)
T ss_pred eCc
Confidence 654
No 94
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.54 E-value=6.9e-14 Score=109.98 Aligned_cols=98 Identities=28% Similarity=0.428 Sum_probs=80.4
Q ss_pred HHHHHHHHHhC--CCceEEEecCCCHHHH--HHHHHHHhcCCeeEEEEeCCcccccccCCCcEEEEecC------CC---
Q psy576 59 AQELYNELIYD--GINVDVIHSDRTQKQR--DNVVRSFRTGRIWILITTELLGRGIDFRTVRLVVNYDF------PS--- 125 (159)
Q Consensus 59 ~~~l~~~l~~~--~~~~~~~~~~~~~~~r--~~~~~~f~~~~~~vlv~t~~~~~g~~i~~~~~vi~~~~------~~--- 125 (159)
.+.+.+.|.+. +.++..+|++++...+ +++++.|.+|+.+|||+|+++++|+|+|+++.|+.++. |+
T Consensus 271 te~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra 350 (505)
T TIGR00595 271 TEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRA 350 (505)
T ss_pred HHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccch
Confidence 35677777665 6789999999876655 88999999999999999999999999999998865433 22
Q ss_pred ---CHHHHHHHHhhccCCCCcceEEEEecCCCcc
Q psy576 126 ---SAISYIHRIGRAGRGGREGKAVTFFTKQDAP 156 (159)
Q Consensus 126 ---~~~~~~q~~GR~~R~g~~g~~~~~~~~~~~~ 156 (159)
..+.|.|++||+||.+..|.+++.....+..
T Consensus 351 ~E~~~~ll~q~~GRagR~~~~g~viiqt~~p~~~ 384 (505)
T TIGR00595 351 AERGFQLLTQVAGRAGRAEDPGQVIIQTYNPNHP 384 (505)
T ss_pred HHHHHHHHHHHHhccCCCCCCCEEEEEeCCCCCH
Confidence 2467899999999999999999887766653
No 95
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.54 E-value=1.3e-13 Score=112.70 Aligned_cols=106 Identities=29% Similarity=0.463 Sum_probs=89.2
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHh----cCCeeEEEEeCCcccccccCCCcEEEE
Q psy576 45 IEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFR----TGRIWILITTELLGRGIDFRTVRLVVN 120 (159)
Q Consensus 45 ~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~----~~~~~vlv~t~~~~~g~~i~~~~~vi~ 120 (159)
.+.+++|.|+|++.|.++++.|+..+.++..+||.+...+|.+.++.+. .+...|+|+|++++.|+|+. .+++|-
T Consensus 439 ~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid-fd~mIT 517 (733)
T COG1203 439 EGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID-FDVLIT 517 (733)
T ss_pred cCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc-cCeeee
Confidence 5578999999999999999999988778999999999999998888654 46788999999999999984 666665
Q ss_pred ecCCCCHHHHHHHHhhccCCC--CcceEEEEecCC
Q psy576 121 YDFPSSAISYIHRIGRAGRGG--REGKAVTFFTKQ 153 (159)
Q Consensus 121 ~~~~~~~~~~~q~~GR~~R~g--~~g~~~~~~~~~ 153 (159)
= +.+..+++||+||++|.| ..|.++++....
T Consensus 518 e--~aPidSLIQR~GRv~R~g~~~~~~~~v~~~~~ 550 (733)
T COG1203 518 E--LAPIDSLIQRAGRVNRHGKKENGKIYVYNDEE 550 (733)
T ss_pred c--CCCHHHHHHHHHHHhhcccccCCceeEeeccc
Confidence 3 345899999999999999 567777666544
No 96
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.53 E-value=2.2e-13 Score=104.82 Aligned_cols=108 Identities=34% Similarity=0.458 Sum_probs=100.2
Q ss_pred CCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCcccccccCCCcEEEEecC
Q psy576 44 GIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGRGIDFRTVRLVVNYDF 123 (159)
Q Consensus 44 ~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~g~~i~~~~~vi~~~~ 123 (159)
..+.+++|-+-|++.++.+.++|.+.|+++.++|++..--+|.+++.+++.|+++|||.-+.+-+|+|+|.++.|..+|.
T Consensus 444 ~~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDA 523 (663)
T COG0556 444 AKNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDA 523 (663)
T ss_pred hcCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeec
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999998865
Q ss_pred C-----CCHHHHHHHHhhccCCCCcceEEEEecC
Q psy576 124 P-----SSAISYIHRIGRAGRGGREGKAVTFFTK 152 (159)
Q Consensus 124 ~-----~~~~~~~q~~GR~~R~g~~g~~~~~~~~ 152 (159)
. .|..+++|-+||+.|. -.|.+++|.+.
T Consensus 524 DKeGFLRse~SLIQtIGRAARN-~~GkvIlYAD~ 556 (663)
T COG0556 524 DKEGFLRSERSLIQTIGRAARN-VNGKVILYADK 556 (663)
T ss_pred CccccccccchHHHHHHHHhhc-cCCeEEEEchh
Confidence 4 5899999999999998 57889888764
No 97
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.52 E-value=3.8e-13 Score=113.57 Aligned_cols=96 Identities=27% Similarity=0.330 Sum_probs=82.4
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhC------CC---ceEEEecCCCHHHHHHHHHHHhcCCe-eEEEEeCCcccccccCC
Q psy576 45 IEPPVLVFVQSKERAQELYNELIYD------GI---NVDVIHSDRTQKQRDNVVRSFRTGRI-WILITTELLGRGIDFRT 114 (159)
Q Consensus 45 ~~~~~lif~~~~~~~~~l~~~l~~~------~~---~~~~~~~~~~~~~r~~~~~~f~~~~~-~vlv~t~~~~~g~~i~~ 114 (159)
..+++||||.+.++|+.+.+.|.+. +. .+..+||+.+ ++..+++.|++++. .|+|+++++.+|+|+|.
T Consensus 697 ~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~ 774 (1123)
T PRK11448 697 GEGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPS 774 (1123)
T ss_pred CCCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCccc
Confidence 3478999999999999999887652 12 3556888764 46779999999876 69999999999999999
Q ss_pred CcEEEEecCCCCHHHHHHHHhhccCCCC
Q psy576 115 VRLVVNYDFPSSAISYIHRIGRAGRGGR 142 (159)
Q Consensus 115 ~~~vi~~~~~~~~~~~~q~~GR~~R~g~ 142 (159)
+.+|+.+.++.|...|.||+||+.|...
T Consensus 775 v~~vVf~rpvkS~~lf~QmIGRgtR~~~ 802 (1123)
T PRK11448 775 ICNLVFLRRVRSRILYEQMLGRATRLCP 802 (1123)
T ss_pred ccEEEEecCCCCHHHHHHHHhhhccCCc
Confidence 9999999999999999999999999653
No 98
>KOG0329|consensus
Probab=99.51 E-value=8.9e-15 Score=103.47 Aligned_cols=106 Identities=31% Similarity=0.570 Sum_probs=92.1
Q ss_pred HHhhhhccceeeeecCCCCChHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHH
Q psy576 13 KRRVKSNLARMYRETEGAGSPVQAQDETILLGIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSF 92 (159)
Q Consensus 13 ~~~~~~~i~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f 92 (159)
.+....++.++|..+.+ .+|+..+.+++.....++++||+.+..... |
T Consensus 251 ~KLtLHGLqQ~YvkLke-~eKNrkl~dLLd~LeFNQVvIFvKsv~Rl~-------------------------------f 298 (387)
T KOG0329|consen 251 AKLTLHGLQQYYVKLKE-NEKNRKLNDLLDVLEFNQVVIFVKSVQRLS-------------------------------F 298 (387)
T ss_pred hhhhhhhHHHHHHhhhh-hhhhhhhhhhhhhhhhcceeEeeehhhhhh-------------------------------h
Confidence 34556788899999988 799999999999888999999999887510 2
Q ss_pred hcCCeeEEEEeCCcccccccCCCcEEEEecCCCCHHHHHHHHhhccCCCCcceEEEEecCCC
Q psy576 93 RTGRIWILITTELLGRGIDFRTVRLVVNYDFPSSAISYIHRIGRAGRGGREGKAVTFFTKQD 154 (159)
Q Consensus 93 ~~~~~~vlv~t~~~~~g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~g~~~~~~~~~~ 154 (159)
+.+ +|+|+..++|+||..++.++|||.|.++..|++|+||+||.|.+|.++.|++..+
T Consensus 299 ---~kr-~vat~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~ 356 (387)
T KOG0329|consen 299 ---QKR-LVATDLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEN 356 (387)
T ss_pred ---hhh-hHHhhhhccccCcccceeeeccCCCCCchHHHHHhhhhhccccccceeehhcchh
Confidence 122 7899999999999999999999999999999999999999999999999988654
No 99
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.45 E-value=9.9e-13 Score=111.66 Aligned_cols=100 Identities=26% Similarity=0.344 Sum_probs=83.2
Q ss_pred hccceeeeecCCCCChHHHHHHHHhcCCCCCEEEEecch---HHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhc
Q psy576 18 SNLARMYRETEGAGSPVQAQDETILLGIEPPVLVFVQSK---ERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRT 94 (159)
Q Consensus 18 ~~i~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lif~~~~---~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 94 (159)
.++.+.+..... +...|.+++... +.++||||++. +.+++++..|.+.|+++..+||+++. ..++.|++
T Consensus 302 r~I~~~~~~~~~---~~~~L~~ll~~l-~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~~----~~l~~Fr~ 373 (1171)
T TIGR01054 302 RNVVDVYVEDED---LKETLLEIVKKL-GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKPK----EDYEKFAE 373 (1171)
T ss_pred cceEEEEEeccc---HHHHHHHHHHHc-CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCCH----HHHHHHHc
Confidence 355555553322 245566777653 46799999999 99999999999999999999999863 68999999
Q ss_pred CCeeEEEEe----CCcccccccCC-CcEEEEecCCC
Q psy576 95 GRIWILITT----ELLGRGIDFRT-VRLVVNYDFPS 125 (159)
Q Consensus 95 ~~~~vlv~t----~~~~~g~~i~~-~~~vi~~~~~~ 125 (159)
|+.+||||| +++++|+|+|+ +++||++++|.
T Consensus 374 G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 374 GEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred CCCCEEEEeccccCcccccCCCCccccEEEEECCCC
Confidence 999999994 89999999999 89999999996
No 100
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.41 E-value=6.6e-13 Score=108.56 Aligned_cols=111 Identities=19% Similarity=0.300 Sum_probs=96.6
Q ss_pred cCCCCCEEEEecchHHHHHHHHHHHh----CCCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCcccccccCCCcEE
Q psy576 43 LGIEPPVLVFVQSKERAQELYNELIY----DGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGRGIDFRTVRLV 118 (159)
Q Consensus 43 ~~~~~~~lif~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~g~~i~~~~~v 118 (159)
....+.+|||.+..++.+...+.|.+ ....+.++||.++.+++.++++.-..++-+|+++|++++.++.||++.+|
T Consensus 256 ~~~~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~V 335 (845)
T COG1643 256 REGSGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYV 335 (845)
T ss_pred cCCCCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEE
Confidence 34578899999999999999999987 35678999999999999998888888877799999999999999999999
Q ss_pred EEecC------------------CCCHHHHHHHHhhccCCCCcceEEEEecCCC
Q psy576 119 VNYDF------------------PSSAISYIHRIGRAGRGGREGKAVTFFTKQD 154 (159)
Q Consensus 119 i~~~~------------------~~~~~~~~q~~GR~~R~g~~g~~~~~~~~~~ 154 (159)
|.-+. |-|-++..||.||+||- .+|.|+-+|+..+
T Consensus 336 IDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~-~pGicyRLyse~~ 388 (845)
T COG1643 336 IDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRT-GPGICYRLYSEED 388 (845)
T ss_pred ecCCcccccccccccCceeeeEEEechhhhhhhccccccC-CCceEEEecCHHH
Confidence 96432 23788899999999999 4899999998654
No 101
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.40 E-value=2.8e-12 Score=105.99 Aligned_cols=121 Identities=27% Similarity=0.473 Sum_probs=100.8
Q ss_pred ChHHHHHHHHhc--CCCCCEEEEecchHHHHHHHH----HHHhCC----CceEEEecCCCHHHHHHHHHHHhcCCeeEEE
Q psy576 32 SPVQAQDETILL--GIEPPVLVFVQSKERAQELYN----ELIYDG----INVDVIHSDRTQKQRDNVVRSFRTGRIWILI 101 (159)
Q Consensus 32 ~k~~~l~~~~~~--~~~~~~lif~~~~~~~~~l~~----~l~~~~----~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv 101 (159)
.+...+..+... ..+-++|+|+.+.+.++.++. .+...+ ..+...++++.+.+|.++...|+.|++.+++
T Consensus 290 s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~ 369 (851)
T COG1205 290 SALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVI 369 (851)
T ss_pred chHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCccEEe
Confidence 444444444432 256789999999999999973 333334 5688999999999999999999999999999
Q ss_pred EeCCcccccccCCCcEEEEecCCC-CHHHHHHHHhhccCCCCcceEEEEecC
Q psy576 102 TTELLGRGIDFRTVRLVVNYDFPS-SAISYIHRIGRAGRGGREGKAVTFFTK 152 (159)
Q Consensus 102 ~t~~~~~g~~i~~~~~vi~~~~~~-~~~~~~q~~GR~~R~g~~g~~~~~~~~ 152 (159)
+|.+++.|+|+.+++.||..+.|. +..++.|+.||+||.++....+.....
T Consensus 370 st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~ 421 (851)
T COG1205 370 ATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLRS 421 (851)
T ss_pred cchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeCC
Confidence 999999999999999999999999 899999999999999977766666653
No 102
>KOG0384|consensus
Probab=99.39 E-value=7.9e-13 Score=109.33 Aligned_cols=125 Identities=19% Similarity=0.207 Sum_probs=109.5
Q ss_pred CCCCChHHHHHHHHhc--CCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhc---CCeeEEEE
Q psy576 28 EGAGSPVQAQDETILL--GIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRT---GRIWILIT 102 (159)
Q Consensus 28 ~~~~~k~~~l~~~~~~--~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~---~~~~vlv~ 102 (159)
-...+|+-+|-++|.. ..+++||||..-+...+-++++|..++++.-.+.|.+..+.|...++.|+. .++..|+|
T Consensus 679 I~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLS 758 (1373)
T KOG0384|consen 679 IQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLS 758 (1373)
T ss_pred HHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEe
Confidence 3346788777788764 356799999999999999999999999999999999999999999999987 35779999
Q ss_pred eCCcccccccCCCcEEEEecCCCCHHHHHHHHhhccCCCCcceE--EEEecC
Q psy576 103 TELLGRGIDFRTVRLVVNYDFPSSAISYIHRIGRAGRGGREGKA--VTFFTK 152 (159)
Q Consensus 103 t~~~~~g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~g~~--~~~~~~ 152 (159)
|.+.+.|||+-.++.||+||..|+++.=+|...||.|.|++..| |-|++.
T Consensus 759 TRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk 810 (1373)
T KOG0384|consen 759 TRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTK 810 (1373)
T ss_pred cccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecC
Confidence 99999999999999999999999999999999999999977544 444544
No 103
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.39 E-value=2.2e-12 Score=104.80 Aligned_cols=99 Identities=27% Similarity=0.340 Sum_probs=82.6
Q ss_pred HHHHHHHHHHhC--CCceEEEecCCC--HHHHHHHHHHHhcCCeeEEEEeCCcccccccCCCcEEEEecCC--C------
Q psy576 58 RAQELYNELIYD--GINVDVIHSDRT--QKQRDNVVRSFRTGRIWILITTELLGRGIDFRTVRLVVNYDFP--S------ 125 (159)
Q Consensus 58 ~~~~l~~~l~~~--~~~~~~~~~~~~--~~~r~~~~~~f~~~~~~vlv~t~~~~~g~~i~~~~~vi~~~~~--~------ 125 (159)
-++.+.+.|.+. +.++..+|+++. ..+++++++.|.+|+.+|||+|+++++|+|+|+++.|+.++.. .
T Consensus 438 G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfr 517 (679)
T PRK05580 438 GTERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFR 517 (679)
T ss_pred cHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccc
Confidence 455777777665 678999999986 4678999999999999999999999999999999988765433 2
Q ss_pred ----CHHHHHHHHhhccCCCCcceEEEEecCCCcc
Q psy576 126 ----SAISYIHRIGRAGRGGREGKAVTFFTKQDAP 156 (159)
Q Consensus 126 ----~~~~~~q~~GR~~R~g~~g~~~~~~~~~~~~ 156 (159)
..+.|.|++||+||.+..|.+++.....+..
T Consensus 518 a~Er~~~~l~q~~GRagR~~~~g~viiqT~~p~~~ 552 (679)
T PRK05580 518 ASERTFQLLTQVAGRAGRAEKPGEVLIQTYHPEHP 552 (679)
T ss_pred hHHHHHHHHHHHHhhccCCCCCCEEEEEeCCCCCH
Confidence 2367999999999999999999988877654
No 104
>KOG0385|consensus
Probab=99.39 E-value=3.7e-12 Score=101.51 Aligned_cols=120 Identities=18% Similarity=0.282 Sum_probs=107.8
Q ss_pred CCChHHHHHHHHhc--CCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcC---CeeEEEEeC
Q psy576 30 AGSPVQAQDETILL--GIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTG---RIWILITTE 104 (159)
Q Consensus 30 ~~~k~~~l~~~~~~--~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~---~~~vlv~t~ 104 (159)
..+|+.+|-+++.. ..++++|||..-....+-+..++.-+++....+.|.++-++|...++.|+.. ..-.|++|.
T Consensus 469 nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTR 548 (971)
T KOG0385|consen 469 NSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTR 548 (971)
T ss_pred cCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEecc
Confidence 36888888888863 4778999999999999999999988899999999999999999999999873 356788999
Q ss_pred CcccccccCCCcEEEEecCCCCHHHHHHHHhhccCCCCcceEEEE
Q psy576 105 LLGRGIDFRTVRLVVNYDFPSSAISYIHRIGRAGRGGREGKAVTF 149 (159)
Q Consensus 105 ~~~~g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~g~~~~~ 149 (159)
+++.|+|+-.+++||.||..|+++.=+|.+.|+.|.|+..+|.+|
T Consensus 549 AGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~ 593 (971)
T KOG0385|consen 549 AGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVY 593 (971)
T ss_pred ccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEE
Confidence 999999999999999999999999999999999999987766655
No 105
>KOG0947|consensus
Probab=99.38 E-value=3.6e-12 Score=103.57 Aligned_cols=111 Identities=25% Similarity=0.318 Sum_probs=91.5
Q ss_pred cCCCCCEEEEecchHHHHHHHHHHHhCCCc---------------------------------------eEEEecCCCHH
Q psy576 43 LGIEPPVLVFVQSKERAQELYNELIYDGIN---------------------------------------VDVIHSDRTQK 83 (159)
Q Consensus 43 ~~~~~~~lif~~~~~~~~~l~~~l~~~~~~---------------------------------------~~~~~~~~~~~ 83 (159)
...--|+++||-+++.|++-+++|...+.. +.++||++-|-
T Consensus 564 k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPi 643 (1248)
T KOG0947|consen 564 KKNLLPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPI 643 (1248)
T ss_pred hcccCceEEEEEccccHHHHHHHHhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHH
Confidence 334558999999999999888877543221 78999999999
Q ss_pred HHHHHHHHHhcCCeeEEEEeCCcccccccCCCcEEEEecC--------CCCHHHHHHHHhhccCCC--CcceEEEEecCC
Q psy576 84 QRDNVVRSFRTGRIWILITTELLGRGIDFRTVRLVVNYDF--------PSSAISYIHRIGRAGRGG--REGKAVTFFTKQ 153 (159)
Q Consensus 84 ~r~~~~~~f~~~~~~vlv~t~~~~~g~~i~~~~~vi~~~~--------~~~~~~~~q~~GR~~R~g--~~g~~~~~~~~~ 153 (159)
-++-+.-.|+.|-.+||.||...++|+|.|.-++|+.--. --.+.+|.||.||+||.| ..|.++++....
T Consensus 644 vKE~VE~LFqrGlVKVLFATETFAMGVNMPARtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~ 723 (1248)
T KOG0947|consen 644 VKEVVELLFQRGLVKVLFATETFAMGVNMPARTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS 723 (1248)
T ss_pred HHHHHHHHHhcCceEEEeehhhhhhhcCCCceeEEeeehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCC
Confidence 9998889999999999999999999999999998874211 126899999999999999 679888887654
No 106
>KOG0951|consensus
Probab=99.37 E-value=7.4e-12 Score=104.08 Aligned_cols=117 Identities=22% Similarity=0.377 Sum_probs=93.7
Q ss_pred HHHhcCCCCCEEEEecchHHHHHHHHHHHhC-------------------------------------CCceEEEecCCC
Q psy576 39 ETILLGIEPPVLVFVQSKERAQELYNELIYD-------------------------------------GINVDVIHSDRT 81 (159)
Q Consensus 39 ~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~-------------------------------------~~~~~~~~~~~~ 81 (159)
+.++...++++|||+-++++..+.++.++.. ...++++|.||+
T Consensus 539 KVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~ 618 (1674)
T KOG0951|consen 539 KVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLN 618 (1674)
T ss_pred HHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCC
Confidence 4444445689999999998877766665410 123789999999
Q ss_pred HHHHHHHHHHHhcCCeeEEEEeCCcccccccCCCcEEEE----ecCC------CCHHHHHHHHhhccCCC--CcceEEEE
Q psy576 82 QKQRDNVVRSFRTGRIWILITTELLGRGIDFRTVRLVVN----YDFP------SSAISYIHRIGRAGRGG--REGKAVTF 149 (159)
Q Consensus 82 ~~~r~~~~~~f~~~~~~vlv~t~~~~~g~~i~~~~~vi~----~~~~------~~~~~~~q~~GR~~R~g--~~g~~~~~ 149 (159)
..+|....+.|.+|.++|+++|-.+++|+|+|+=+++|- |++- -++.+..||.||+||.+ ..|..++.
T Consensus 619 R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~D~~gegiii 698 (1674)
T KOG0951|consen 619 RKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYDTCGEGIII 698 (1674)
T ss_pred cchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCccCcCCceeec
Confidence 999999999999999999999999999999999998873 4432 37899999999999988 45777777
Q ss_pred ecCCCc
Q psy576 150 FTKQDA 155 (159)
Q Consensus 150 ~~~~~~ 155 (159)
....|.
T Consensus 699 t~~se~ 704 (1674)
T KOG0951|consen 699 TDHSEL 704 (1674)
T ss_pred cCchHh
Confidence 665554
No 107
>KOG0390|consensus
Probab=99.36 E-value=1.4e-11 Score=99.41 Aligned_cols=120 Identities=13% Similarity=0.158 Sum_probs=94.5
Q ss_pred CChHHHHHHHHhc---CCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCC---eeEEEEeC
Q psy576 31 GSPVQAQDETILL---GIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGR---IWILITTE 104 (159)
Q Consensus 31 ~~k~~~l~~~~~~---~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~---~~vlv~t~ 104 (159)
.+|+..|..++.. ....++++..+-+...+-+...++-.|..+..+||.++..+|..+++.|++.. .-.|.+|.
T Consensus 577 s~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsK 656 (776)
T KOG0390|consen 577 SGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSK 656 (776)
T ss_pred hhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecc
Confidence 4566667777632 12223444445555555555555556999999999999999999999999843 33555778
Q ss_pred CcccccccCCCcEEEEecCCCCHHHHHHHHhhccCCCCcceEEEEe
Q psy576 105 LLGRGIDFRTVRLVVNYDFPSSAISYIHRIGRAGRGGREGKAVTFF 150 (159)
Q Consensus 105 ~~~~g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~g~~~~~~ 150 (159)
+.+.|+++-+++.+|.+|++|+++.-.|.++|++|.|++.+|++|-
T Consensus 657 Agg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYr 702 (776)
T KOG0390|consen 657 AGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYR 702 (776)
T ss_pred cccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEE
Confidence 9999999999999999999999999999999999999999998873
No 108
>KOG0948|consensus
Probab=99.36 E-value=1.3e-12 Score=103.95 Aligned_cols=115 Identities=24% Similarity=0.336 Sum_probs=93.1
Q ss_pred HHHhcCCCCCEEEEecchHHHHHHHHHHHhCCCc---------------------------------------eEEEecC
Q psy576 39 ETILLGIEPPVLVFVQSKERAQELYNELIYDGIN---------------------------------------VDVIHSD 79 (159)
Q Consensus 39 ~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~~---------------------------------------~~~~~~~ 79 (159)
+.+-..+..|+|||+-++++|+..+-.+.+..++ ++++|+|
T Consensus 376 kmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsG 455 (1041)
T KOG0948|consen 376 KMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSG 455 (1041)
T ss_pred HHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcChhhccchHHHHHHHHHHhcccccccc
Confidence 3333447789999999999999766655443222 7899999
Q ss_pred CCHHHHHHHHHHHhcCCeeEEEEeCCcccccccCCCcEEEEe----cCC----CCHHHHHHHHhhccCCC--CcceEEEE
Q psy576 80 RTQKQRDNVVRSFRTGRIWILITTELLGRGIDFRTVRLVVNY----DFP----SSAISYIHRIGRAGRGG--REGKAVTF 149 (159)
Q Consensus 80 ~~~~~r~~~~~~f~~~~~~vlv~t~~~~~g~~i~~~~~vi~~----~~~----~~~~~~~q~~GR~~R~g--~~g~~~~~ 149 (159)
+-|--++-+.=.|+.|-+++|.||...+.|+|.|+-++|+.. |-. -+..+|+||.||+||.| ..|.|+++
T Consensus 456 LLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT~~rKfDG~~fRwissGEYIQMSGRAGRRG~DdrGivIlm 535 (1041)
T KOG0948|consen 456 LLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFTAVRKFDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVILM 535 (1041)
T ss_pred chHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEeeccccCCcceeeecccceEEecccccccCCCCCceEEEE
Confidence 999888888889999999999999999999999999987743 111 16889999999999999 56989888
Q ss_pred ecCC
Q psy576 150 FTKQ 153 (159)
Q Consensus 150 ~~~~ 153 (159)
++..
T Consensus 536 iDek 539 (1041)
T KOG0948|consen 536 IDEK 539 (1041)
T ss_pred ecCc
Confidence 8754
No 109
>KOG0950|consensus
Probab=99.36 E-value=2.5e-12 Score=104.39 Aligned_cols=111 Identities=24% Similarity=0.444 Sum_probs=91.9
Q ss_pred CCEEEEecchHHHHHHHHHHHhC--------------------------------------CCceEEEecCCCHHHHHHH
Q psy576 47 PPVLVFVQSKERAQELYNELIYD--------------------------------------GINVDVIHSDRTQKQRDNV 88 (159)
Q Consensus 47 ~~~lif~~~~~~~~~l~~~l~~~--------------------------------------~~~~~~~~~~~~~~~r~~~ 88 (159)
.++||||++++.++.++..+... ...+.++|.+++.++|+.+
T Consensus 461 ~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~i 540 (1008)
T KOG0950|consen 461 SSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEEREII 540 (1008)
T ss_pred CeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheeccccceecccccccchHHHH
Confidence 45999999999888665433210 1127899999999999999
Q ss_pred HHHHhcCCeeEEEEeCCcccccccCCCcEEEEe----cCCCCHHHHHHHHhhccCCC--CcceEEEEecCCCccc
Q psy576 89 VRSFRTGRIWILITTELLGRGIDFRTVRLVVNY----DFPSSAISYIHRIGRAGRGG--REGKAVTFFTKQDAPL 157 (159)
Q Consensus 89 ~~~f~~~~~~vlv~t~~~~~g~~i~~~~~vi~~----~~~~~~~~~~q~~GR~~R~g--~~g~~~~~~~~~~~~~ 157 (159)
...|++|-..|++||+.++.|+|.|...+++-. ....+.-.|.||+||+||.| -.|.+++.+...|++.
T Consensus 541 E~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRAGR~gidT~GdsiLI~k~~e~~~ 615 (1008)
T KOG0950|consen 541 EAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRAGRTGIDTLGDSILIIKSSEKKR 615 (1008)
T ss_pred HHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhhhhhcccccCcceEEEeeccchhH
Confidence 999999999999999999999999999988853 23357889999999999998 4598999999888754
No 110
>KOG0953|consensus
Probab=99.34 E-value=2.4e-11 Score=94.10 Aligned_cols=109 Identities=19% Similarity=0.256 Sum_probs=85.7
Q ss_pred hcCCCCCEEEEecchHHHHHHHHHHHhCCC-ceEEEecCCCHHHHHHHHHHHhc--CCeeEEEEeCCcccccccCCCcEE
Q psy576 42 LLGIEPPVLVFVQSKERAQELYNELIYDGI-NVDVIHSDRTQKQRDNVVRSFRT--GRIWILITTELLGRGIDFRTVRLV 118 (159)
Q Consensus 42 ~~~~~~~~lif~~~~~~~~~l~~~l~~~~~-~~~~~~~~~~~~~r~~~~~~f~~--~~~~vlv~t~~~~~g~~i~~~~~v 118 (159)
.....+.|+|. -|++..-.+...+.+.+. ++.+++|++||+.|......|++ ++.+|||||++.++|+|+ +++-|
T Consensus 353 ~nlk~GDCvV~-FSkk~I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRi 430 (700)
T KOG0953|consen 353 SNLKPGDCVVA-FSKKDIFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRI 430 (700)
T ss_pred ccCCCCCeEEE-eehhhHHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEE
Confidence 33456677554 355667777777877755 49999999999999999999998 889999999999999998 66667
Q ss_pred EEecCC---------CCHHHHHHHHhhccCCC---CcceEEEEecC
Q psy576 119 VNYDFP---------SSAISYIHRIGRAGRGG---REGKAVTFFTK 152 (159)
Q Consensus 119 i~~~~~---------~~~~~~~q~~GR~~R~g---~~g~~~~~~~~ 152 (159)
|.++.. -+..+..|..||+||.| ..|.+..+..+
T Consensus 431 iF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~~e 476 (700)
T KOG0953|consen 431 IFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLHSE 476 (700)
T ss_pred EEeecccCCcccceeccHHHHHHHhhcccccccCCcCceEEEeeHh
Confidence 766543 36778899999999988 45766666543
No 111
>KOG0387|consensus
Probab=99.30 E-value=2.9e-11 Score=96.78 Aligned_cols=120 Identities=19% Similarity=0.203 Sum_probs=105.5
Q ss_pred CCChHHHHHHHHhc--CCCCCEEEEecchHHHHHHHHHHH-hCCCceEEEecCCCHHHHHHHHHHHhcCC--eeEEEEeC
Q psy576 30 AGSPVQAQDETILL--GIEPPVLVFVQSKERAQELYNELI-YDGINVDVIHSDRTQKQRDNVVRSFRTGR--IWILITTE 104 (159)
Q Consensus 30 ~~~k~~~l~~~~~~--~~~~~~lif~~~~~~~~~l~~~l~-~~~~~~~~~~~~~~~~~r~~~~~~f~~~~--~~vlv~t~ 104 (159)
..+|++.+.+++.. .+++++++|..++...+-+...|. ..++....+.|..+...|..+++.|++++ .-.|++|.
T Consensus 528 ~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTr 607 (923)
T KOG0387|consen 528 RSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTR 607 (923)
T ss_pred hcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEec
Confidence 36799998888873 466789999999999988888887 67999999999999999999999999865 34677999
Q ss_pred CcccccccCCCcEEEEecCCCCHHHHHHHHhhccCCCCcceEEEE
Q psy576 105 LLGRGIDFRTVRLVVNYDFPSSAISYIHRIGRAGRGGREGKAVTF 149 (159)
Q Consensus 105 ~~~~g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~g~~~~~ 149 (159)
+.+.|+|+-.++-||.|||.|++..=.|..-|++|.|++..|++|
T Consensus 608 vGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VY 652 (923)
T KOG0387|consen 608 VGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVY 652 (923)
T ss_pred ccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEE
Confidence 999999999999999999999999999999999999987655554
No 112
>KOG4150|consensus
Probab=99.29 E-value=2.2e-11 Score=94.97 Aligned_cols=108 Identities=19% Similarity=0.235 Sum_probs=91.2
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhC----CC----ceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCcccccccCCCc
Q psy576 45 IEPPVLVFVQSKERAQELYNELIYD----GI----NVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGRGIDFRTVR 116 (159)
Q Consensus 45 ~~~~~lif~~~~~~~~~l~~~l~~~----~~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~g~~i~~~~ 116 (159)
.+-++|.||.+++-|+-+....+.. +. .+..+.|+...++|+++...+-.|++.-+|+|.+++.|+||..++
T Consensus 524 ~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~LD 603 (1034)
T KOG4150|consen 524 HGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALELGIDIGHLD 603 (1034)
T ss_pred cCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecchhhhccccccce
Confidence 4568999999999888765544332 11 255678999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCHHHHHHHHhhccCCCCcceEEEEecC
Q psy576 117 LVVNYDFPSSAISYIHRIGRAGRGGREGKAVTFFTK 152 (159)
Q Consensus 117 ~vi~~~~~~~~~~~~q~~GR~~R~g~~g~~~~~~~~ 152 (159)
.|+++++|.+.+.+.|+.||+||..++..+++....
T Consensus 604 AVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~ 639 (1034)
T KOG4150|consen 604 AVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFL 639 (1034)
T ss_pred eEEEccCchhHHHHHHHhccccccCCCceEEEEEec
Confidence 999999999999999999999998766666655543
No 113
>KOG0952|consensus
Probab=99.26 E-value=4.5e-11 Score=98.05 Aligned_cols=111 Identities=24% Similarity=0.425 Sum_probs=90.3
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhC----C-------------------CceEEEecCCCHHHHHHHHHHHhcCCeeEEE
Q psy576 45 IEPPVLVFVQSKERAQELYNELIYD----G-------------------INVDVIHSDRTQKQRDNVVRSFRTGRIWILI 101 (159)
Q Consensus 45 ~~~~~lif~~~~~~~~~l~~~l~~~----~-------------------~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv 101 (159)
.+++++|||.+++...+.++.|.+. + ...++.|.||..++|.-+.+.|+.|-++||+
T Consensus 348 ~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~ 427 (1230)
T KOG0952|consen 348 EGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIKVLC 427 (1230)
T ss_pred cCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcCCceEEE
Confidence 6789999999999888887777542 1 1267899999999999999999999999999
Q ss_pred EeCCcccccccCCCcEEEE----ecCCC------CHHHHHHHHhhccCCC--CcceEEEEecCCCc
Q psy576 102 TTELLGRGIDFRTVRLVVN----YDFPS------SAISYIHRIGRAGRGG--REGKAVTFFTKQDA 155 (159)
Q Consensus 102 ~t~~~~~g~~i~~~~~vi~----~~~~~------~~~~~~q~~GR~~R~g--~~g~~~~~~~~~~~ 155 (159)
||..+++|+|+|+--++|. |+... ..-+.+|..||+||.+ ..|.+++..+.+..
T Consensus 428 cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl 493 (1230)
T KOG0952|consen 428 CTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKL 493 (1230)
T ss_pred ecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHH
Confidence 9999999999998777764 22221 4667899999999977 66888887776544
No 114
>KOG0922|consensus
Probab=99.21 E-value=1e-10 Score=92.20 Aligned_cols=118 Identities=22% Similarity=0.297 Sum_probs=98.0
Q ss_pred HHHHHhcCCCCCEEEEecchHHHHHHHHHHHhC----CC----ceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCccc
Q psy576 37 QDETILLGIEPPVLVFVQSKERAQELYNELIYD----GI----NVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGR 108 (159)
Q Consensus 37 l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~----~~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~ 108 (159)
..++-...+.+.+|||....++++...+.|.+. +. -+.++||+++.+++.++++.--.|.-+|+++|++++.
T Consensus 249 v~~Ih~~E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAET 328 (674)
T KOG0922|consen 249 VIQIHLTEPPGDILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAET 328 (674)
T ss_pred HHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeee
Confidence 333333457778999999999999999988764 11 2578999999999999999888899999999999999
Q ss_pred ccccCCCcEEEEecC------------------CCCHHHHHHHHhhccCCCCcceEEEEecCCCc
Q psy576 109 GIDFRTVRLVVNYDF------------------PSSAISYIHRIGRAGRGGREGKAVTFFTKQDA 155 (159)
Q Consensus 109 g~~i~~~~~vi~~~~------------------~~~~~~~~q~~GR~~R~g~~g~~~~~~~~~~~ 155 (159)
.+.||.+..||+-+. |-|-++-.||.||+||.| +|.|+-++...+.
T Consensus 329 SlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~-pGkcyRLYte~~~ 392 (674)
T KOG0922|consen 329 SLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTG-PGKCYRLYTESAY 392 (674)
T ss_pred eEEecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCC-CceEEEeeeHHHH
Confidence 999999999985332 347888999999999995 8999999987654
No 115
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.20 E-value=2.8e-10 Score=92.83 Aligned_cols=121 Identities=23% Similarity=0.314 Sum_probs=94.5
Q ss_pred CChHHHHHHHHh--cCCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcC-CeeEEEEeCCcc
Q psy576 31 GSPVQAQDETIL--LGIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTG-RIWILITTELLG 107 (159)
Q Consensus 31 ~~k~~~l~~~~~--~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~-~~~vlv~t~~~~ 107 (159)
..|...+.+.+. ...+.|+||.|.|.+..+.++..|.+.+++..+++..-. +++.-+-. +.| .-.|.|||++++
T Consensus 409 ~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~--e~EA~IIa-~AG~~GaVTIATNMAG 485 (925)
T PRK12903 409 HAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQN--AREAEIIA-KAGQKGAITIATNMAG 485 (925)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccch--hhHHHHHH-hCCCCCeEEEeccccc
Confidence 456666665554 246789999999999999999999999999888888633 33222222 345 457999999999
Q ss_pred cccccCCCc--------EEEEecCCCCHHHHHHHHhhccCCCCcceEEEEecCCC
Q psy576 108 RGIDFRTVR--------LVVNYDFPSSAISYIHRIGRAGRGGREGKAVTFFTKQD 154 (159)
Q Consensus 108 ~g~~i~~~~--------~vi~~~~~~~~~~~~q~~GR~~R~g~~g~~~~~~~~~~ 154 (159)
+|.||.--. +||....+.|..---|..||+||.|.+|.+.+|.+-.|
T Consensus 486 RGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~lSLeD 540 (925)
T PRK12903 486 RGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFFISLDD 540 (925)
T ss_pred CCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEEEecch
Confidence 999996332 78888888888888899999999999999888887554
No 116
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.17 E-value=8.3e-10 Score=88.87 Aligned_cols=121 Identities=26% Similarity=0.313 Sum_probs=93.6
Q ss_pred CChHHHHHHHHhc--CCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcC-CeeEEEEeCCcc
Q psy576 31 GSPVQAQDETILL--GIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTG-RIWILITTELLG 107 (159)
Q Consensus 31 ~~k~~~l~~~~~~--~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~-~~~vlv~t~~~~ 107 (159)
..|...+.+.+.. ..+.|+||.+.|.+..+.+...|.+.+++...+++.-...+ .+++. +.| .-.|.|||++++
T Consensus 410 ~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~~~~E-A~IIa--~AG~~gaVTIATNMAG 486 (764)
T PRK12326 410 AEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAKNDAEE-ARIIA--EAGKYGAVTVSTQMAG 486 (764)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccCchHhH-HHHHH--hcCCCCcEEEEecCCC
Confidence 3566666555542 46789999999999999999999999999888887644332 22222 223 345999999999
Q ss_pred cccccCC---------------CcEEEEecCCCCHHHHHHHHhhccCCCCcceEEEEecCCC
Q psy576 108 RGIDFRT---------------VRLVVNYDFPSSAISYIHRIGRAGRGGREGKAVTFFTKQD 154 (159)
Q Consensus 108 ~g~~i~~---------------~~~vi~~~~~~~~~~~~q~~GR~~R~g~~g~~~~~~~~~~ 154 (159)
+|.||.- --+||-...+.|..--.|..||+||.|.+|.+.+|++-.|
T Consensus 487 RGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~lSleD 548 (764)
T PRK12326 487 RGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFFVSLED 548 (764)
T ss_pred CccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCceeEEEEcch
Confidence 9999962 2378888888999999999999999999999988887554
No 117
>KOG0389|consensus
Probab=99.10 E-value=1.2e-09 Score=87.75 Aligned_cols=119 Identities=18% Similarity=0.187 Sum_probs=104.5
Q ss_pred CChHHHHHHHHhc--CCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCC--eeEEEEeCCc
Q psy576 31 GSPVQAQDETILL--GIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGR--IWILITTELL 106 (159)
Q Consensus 31 ~~k~~~l~~~~~~--~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~--~~vlv~t~~~ 106 (159)
.+|...|..++.. ..++++|||..-....+-+...|.-.++....+.|......|..+++.|...+ .-.|++|.+.
T Consensus 760 SgK~r~L~~LLp~~k~~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAG 839 (941)
T KOG0389|consen 760 SGKCRKLKELLPKIKKKGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAG 839 (941)
T ss_pred hhhHhHHHHHHHHHhhcCCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccC
Confidence 6789999988874 35578999999888888888888888999999999999999999999999865 3477799999
Q ss_pred ccccccCCCcEEEEecCCCCHHHHHHHHhhccCCCCcceEEEE
Q psy576 107 GRGIDFRTVRLVVNYDFPSSAISYIHRIGRAGRGGREGKAVTF 149 (159)
Q Consensus 107 ~~g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~g~~~~~ 149 (159)
+.|+|+-.+++||.+|...++-+=.|.--||.|.|+..+|.++
T Consensus 840 G~GINLt~An~VIihD~dFNP~dD~QAEDRcHRvGQtkpVtV~ 882 (941)
T KOG0389|consen 840 GFGINLTCANTVIIHDIDFNPYDDKQAEDRCHRVGQTKPVTVY 882 (941)
T ss_pred cceecccccceEEEeecCCCCcccchhHHHHHhhCCcceeEEE
Confidence 9999999999999999999999999999999999977665543
No 118
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.04 E-value=4.6e-09 Score=87.65 Aligned_cols=119 Identities=22% Similarity=0.234 Sum_probs=104.4
Q ss_pred ChHHHHHHHH-h--cCCCC--CEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcC--CeeEEEEeC
Q psy576 32 SPVQAQDETI-L--LGIEP--PVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTG--RIWILITTE 104 (159)
Q Consensus 32 ~k~~~l~~~~-~--~~~~~--~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~--~~~vlv~t~ 104 (159)
.|...+.+++ . ...+. ++++|+......+-+...+...++....++|.++.+.|...++.|+++ ..-.++++.
T Consensus 692 ~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~k 771 (866)
T COG0553 692 GKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLK 771 (866)
T ss_pred hHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEec
Confidence 6788877777 2 33445 899999999999999999988888899999999999999999999995 455667888
Q ss_pred CcccccccCCCcEEEEecCCCCHHHHHHHHhhccCCCCcceEEEEe
Q psy576 105 LLGRGIDFRTVRLVVNYDFPSSAISYIHRIGRAGRGGREGKAVTFF 150 (159)
Q Consensus 105 ~~~~g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~g~~~~~~ 150 (159)
+++.|+|+-.+++|+++++.|++....|...|+.|.|+...+.++-
T Consensus 772 agg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~r 817 (866)
T COG0553 772 AGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVYR 817 (866)
T ss_pred ccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEEE
Confidence 9999999999999999999999999999999999999887776654
No 119
>KOG0923|consensus
Probab=99.04 E-value=8.9e-10 Score=87.15 Aligned_cols=108 Identities=22% Similarity=0.346 Sum_probs=92.1
Q ss_pred cCCCCCEEEEecchHHHHHHHHHHHhC---------CCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCcccccccC
Q psy576 43 LGIEPPVLVFVQSKERAQELYNELIYD---------GINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGRGIDFR 113 (159)
Q Consensus 43 ~~~~~~~lif~~~~~~~~~l~~~l~~~---------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~g~~i~ 113 (159)
..+.+.+|||....++.+...+.|.+. .+-+.++|+.+|...+.++++..-+|--+|++||++++..+.|+
T Consensus 470 tqp~GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTId 549 (902)
T KOG0923|consen 470 TQPLGDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTID 549 (902)
T ss_pred ccCCccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeec
Confidence 345678999999999888877776543 44578999999999999999998889999999999999999999
Q ss_pred CCcEEEEecC------------------CCCHHHHHHHHhhccCCCCcceEEEEec
Q psy576 114 TVRLVVNYDF------------------PSSAISYIHRIGRAGRGGREGKAVTFFT 151 (159)
Q Consensus 114 ~~~~vi~~~~------------------~~~~~~~~q~~GR~~R~g~~g~~~~~~~ 151 (159)
++..||.-+. |-|.++-.||.||+||-| +|.|+-+++
T Consensus 550 gI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt 604 (902)
T KOG0923|consen 550 GIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYT 604 (902)
T ss_pred CeEEEecCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCC-CCceEEeec
Confidence 9999995332 346788899999999996 789999987
No 120
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.04 E-value=2.7e-09 Score=88.48 Aligned_cols=122 Identities=25% Similarity=0.240 Sum_probs=93.1
Q ss_pred CChHHHHHHHHhc--CCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCccc
Q psy576 31 GSPVQAQDETILL--GIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGR 108 (159)
Q Consensus 31 ~~k~~~l~~~~~~--~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~ 108 (159)
..|...+.+.+.. ..+.|+||-+.|++..+.+++.|...+++.-++.......+-.-+.+ .-..-.|.|||++++|
T Consensus 611 ~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~--AG~~GaVTIATNMAGR 688 (1112)
T PRK12901 611 REKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVAE--AGQPGTVTIATNMAGR 688 (1112)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHHHHHHh--cCCCCcEEEeccCcCC
Confidence 4566666655542 46789999999999999999999999888777777544333222212 2223459999999999
Q ss_pred ccccC--------CCcEEEEecCCCCHHHHHHHHhhccCCCCcceEEEEecCCC
Q psy576 109 GIDFR--------TVRLVVNYDFPSSAISYIHRIGRAGRGGREGKAVTFFTKQD 154 (159)
Q Consensus 109 g~~i~--------~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~g~~~~~~~~~~ 154 (159)
|.||. .--+||-...+.|..---|..||+||.|.+|.+.+|++-.|
T Consensus 689 GTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLED 742 (1112)
T PRK12901 689 GTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLED 742 (1112)
T ss_pred CcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEccc
Confidence 99996 22477877888999999999999999999999888887554
No 121
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.03 E-value=4.7e-09 Score=86.56 Aligned_cols=121 Identities=21% Similarity=0.259 Sum_probs=92.0
Q ss_pred CChHHHHHHHHhc--CCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCC-eeEEEEeCCcc
Q psy576 31 GSPVQAQDETILL--GIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGR-IWILITTELLG 107 (159)
Q Consensus 31 ~~k~~~l~~~~~~--~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~-~~vlv~t~~~~ 107 (159)
..|...+.+.+.. ..+.|+||-|.|.+..+.++..|.+.+++...++..-...+-. ++. ..|+ -.|.|||++++
T Consensus 551 ~~k~~ai~~ei~~~~~~grPvLigt~si~~se~ls~~L~~~gi~h~vLNak~~~~Ea~-iia--~AG~~g~VTIATNmAG 627 (970)
T PRK12899 551 REKYHAIVAEIASIHRKGNPILIGTESVEVSEKLSRILRQNRIEHTVLNAKNHAQEAE-IIA--GAGKLGAVTVATNMAG 627 (970)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCcceecccchhhhHHH-HHH--hcCCCCcEEEeecccc
Confidence 3555555544432 3667999999999999999999999999888888753322222 221 2233 56999999999
Q ss_pred cccccCCC--------cEEEEecCCCCHHHHHHHHhhccCCCCcceEEEEecCCC
Q psy576 108 RGIDFRTV--------RLVVNYDFPSSAISYIHRIGRAGRGGREGKAVTFFTKQD 154 (159)
Q Consensus 108 ~g~~i~~~--------~~vi~~~~~~~~~~~~q~~GR~~R~g~~g~~~~~~~~~~ 154 (159)
+|.||.-- -+||....+.|..--.|..||+||.|.+|.+..|++-.|
T Consensus 628 RGTDIkl~~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~f~lSlED 682 (970)
T PRK12899 628 RGTDIKLDEEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAKFFLSFED 682 (970)
T ss_pred CCcccccCchHHhcCCcEEEeeccCchHHHHHHHhcccccCCCCCceeEEEEcch
Confidence 99999522 267878888999999999999999999999988887554
No 122
>KOG0391|consensus
Probab=99.03 E-value=4.1e-09 Score=87.84 Aligned_cols=121 Identities=20% Similarity=0.215 Sum_probs=103.4
Q ss_pred CCCChHHHHHHHHh--cCCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCC--eeEEEEeC
Q psy576 29 GAGSPVQAQDETIL--LGIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGR--IWILITTE 104 (159)
Q Consensus 29 ~~~~k~~~l~~~~~--~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~--~~vlv~t~ 104 (159)
.+-+|++.|+-++. +..++++|||+.-.+..+-+.++|..+|+--..+.|....++|...++.|+... +..|++|.
T Consensus 1257 yDcGKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTr 1336 (1958)
T KOG0391|consen 1257 YDCGKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTR 1336 (1958)
T ss_pred cccchHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEecc
Confidence 34567777666664 246789999999999999999999999999999999999999999999999854 45677999
Q ss_pred CcccccccCCCcEEEEecCCCCHHHHHHHHhhccCCCCcceEEEE
Q psy576 105 LLGRGIDFRTVRLVVNYDFPSSAISYIHRIGRAGRGGREGKAVTF 149 (159)
Q Consensus 105 ~~~~g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~g~~~~~ 149 (159)
..+.|+|+-.++.||.||..|++.--.|.-.||.|.|+...+++|
T Consensus 1337 SggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIY 1381 (1958)
T KOG0391|consen 1337 SGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIY 1381 (1958)
T ss_pred CCccccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEE
Confidence 999999999999999999999998888988899998876555554
No 123
>KOG0388|consensus
Probab=99.01 E-value=3.1e-09 Score=84.92 Aligned_cols=117 Identities=21% Similarity=0.296 Sum_probs=103.9
Q ss_pred CCChHHHHHHHHhc--CCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCe-eEEEEeCCc
Q psy576 30 AGSPVQAQDETILL--GIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRI-WILITTELL 106 (159)
Q Consensus 30 ~~~k~~~l~~~~~~--~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~-~vlv~t~~~ 106 (159)
+.+|+..|-+++.+ ..++++|+|+.-.+..+-+.++|.-++++...+.|.....+|.+++.+|+..++ -.|++|.+.
T Consensus 1026 dSgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAG 1105 (1185)
T KOG0388|consen 1026 DSGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAG 1105 (1185)
T ss_pred cccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccC
Confidence 36787777777763 356789999999999999999999999999999999999999999999999765 467799999
Q ss_pred ccccccCCCcEEEEecCCCCHHHHHHHHhhccCCCCcceE
Q psy576 107 GRGIDFRTVRLVVNYDFPSSAISYIHRIGRAGRGGREGKA 146 (159)
Q Consensus 107 ~~g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~g~~ 146 (159)
+.|+|+-.++.||.|+..|++..-.|.+.|+.|.|+...+
T Consensus 1106 GLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdv 1145 (1185)
T KOG0388|consen 1106 GLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDV 1145 (1185)
T ss_pred cccccccccceEEEecCCCCcchhhHHHHHHHhccCccce
Confidence 9999999999999999999999999999999999976443
No 124
>KOG0392|consensus
Probab=99.00 E-value=7.2e-09 Score=86.60 Aligned_cols=115 Identities=18% Similarity=0.250 Sum_probs=97.0
Q ss_pred CChHHHHHHHHhc----------------CCCCCEEEEecchHHHHHHHHHHHhC---CCceEEEecCCCHHHHHHHHHH
Q psy576 31 GSPVQAQDETILL----------------GIEPPVLVFVQSKERAQELYNELIYD---GINVDVIHSDRTQKQRDNVVRS 91 (159)
Q Consensus 31 ~~k~~~l~~~~~~----------------~~~~~~lif~~~~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~r~~~~~~ 91 (159)
.-|+..|.+++.. ..++++||||.-++.++-+.+-|.+. .+.-..+.|..++..|.++.+.
T Consensus 1309 spKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~ 1388 (1549)
T KOG0392|consen 1309 SPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVER 1388 (1549)
T ss_pred chhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHH
Confidence 5688888888852 13568999999999999988766554 3334478999999999999999
Q ss_pred HhcC-CeeEEE-EeCCcccccccCCCcEEEEecCCCCHHHHHHHHhhccCCCCcce
Q psy576 92 FRTG-RIWILI-TTELLGRGIDFRTVRLVVNYDFPSSAISYIHRIGRAGRGGREGK 145 (159)
Q Consensus 92 f~~~-~~~vlv-~t~~~~~g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~g~ 145 (159)
|+++ .++||+ +|.+.+.|+|+-.++.||.+.-.|++-.=+|.+.|+.|.|++..
T Consensus 1389 FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrv 1444 (1549)
T KOG0392|consen 1389 FNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRV 1444 (1549)
T ss_pred hcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCcee
Confidence 9997 778776 77999999999999999999999999888999999999997653
No 125
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.00 E-value=4.9e-09 Score=86.23 Aligned_cols=121 Identities=25% Similarity=0.320 Sum_probs=93.0
Q ss_pred CChHHHHHHHHh--cCCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcC-CeeEEEEeCCcc
Q psy576 31 GSPVQAQDETIL--LGIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTG-RIWILITTELLG 107 (159)
Q Consensus 31 ~~k~~~l~~~~~--~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~-~~~vlv~t~~~~ 107 (159)
..|...+.+.+. ...+.|+||-+.|++..+.+++.|.+.+++.-++.......+-. ++. +.| .-.|.|||++++
T Consensus 432 ~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~~L~~~gi~h~VLNAk~~~~EA~-IIa--~AG~~GaVTIATNMAG 508 (913)
T PRK13103 432 EEKYAAIITDIKECMALGRPVLVGTATIETSEHMSNLLKKEGIEHKVLNAKYHEKEAE-IIA--QAGRPGALTIATNMAG 508 (913)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHHcCCcHHHhccccchhHHH-HHH--cCCCCCcEEEeccCCC
Confidence 456666666555 24678999999999999999999999988877777754332222 222 234 456999999999
Q ss_pred cccccC-------------------------------------CCcEEEEecCCCCHHHHHHHHhhccCCCCcceEEEEe
Q psy576 108 RGIDFR-------------------------------------TVRLVVNYDFPSSAISYIHRIGRAGRGGREGKAVTFF 150 (159)
Q Consensus 108 ~g~~i~-------------------------------------~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~g~~~~~~ 150 (159)
+|.||. .--+||--..+.|..---|..||+||.|.+|.+-+|+
T Consensus 509 RGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~l 588 (913)
T PRK13103 509 RGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYL 588 (913)
T ss_pred CCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEE
Confidence 999994 1226777778888888899999999999999999988
Q ss_pred cCCC
Q psy576 151 TKQD 154 (159)
Q Consensus 151 ~~~~ 154 (159)
+-.|
T Consensus 589 SlED 592 (913)
T PRK13103 589 SLED 592 (913)
T ss_pred EcCc
Confidence 8654
No 126
>KOG0920|consensus
Probab=98.98 E-value=1.2e-09 Score=90.03 Aligned_cols=110 Identities=24% Similarity=0.308 Sum_probs=93.5
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhC-------CCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCcccccccCCCcE
Q psy576 45 IEPPVLVFVQSKERAQELYNELIYD-------GINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGRGIDFRTVRL 117 (159)
Q Consensus 45 ~~~~~lif~~~~~~~~~l~~~l~~~-------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~g~~i~~~~~ 117 (159)
..+.+|||.+..+++..+.+.|... .+-+.++|+.|+..++..+....-.|..+|+++|..++.++.|+++-+
T Consensus 412 ~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAETSITIdDVvy 491 (924)
T KOG0920|consen 412 FEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNIAETSITIDDVVY 491 (924)
T ss_pred CCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcchhhhhhhhHhhcccccCeEE
Confidence 4578999999999999999998643 245789999999999999998888899999999999999999999999
Q ss_pred EEEec--------CC----------CCHHHHHHHHhhccCCCCcceEEEEecCCCc
Q psy576 118 VVNYD--------FP----------SSAISYIHRIGRAGRGGREGKAVTFFTKQDA 155 (159)
Q Consensus 118 vi~~~--------~~----------~~~~~~~q~~GR~~R~g~~g~~~~~~~~~~~ 155 (159)
||..+ +- -+.++-.||.||+||- ..|.|+-++.....
T Consensus 492 VIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy~L~~~~~~ 546 (924)
T KOG0920|consen 492 VIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICYHLYTRSRY 546 (924)
T ss_pred EEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-cCCeeEEeechhhh
Confidence 99643 22 1566789999999998 68999999986543
No 127
>KOG0924|consensus
Probab=98.96 E-value=1.3e-09 Score=86.66 Aligned_cols=108 Identities=20% Similarity=0.323 Sum_probs=89.3
Q ss_pred CCCCCEEEEecchHHHHHHHHHHHh----C------CCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCcccccccC
Q psy576 44 GIEPPVLVFVQSKERAQELYNELIY----D------GINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGRGIDFR 113 (159)
Q Consensus 44 ~~~~~~lif~~~~~~~~~l~~~l~~----~------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~g~~i~ 113 (159)
...+.+|||....+..+.....+.. . ++.+..+++.++..-+.++++.-..|.-+++|+|++++..+.+|
T Consensus 561 ~~~GdilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~ 640 (1042)
T KOG0924|consen 561 GPPGDILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIP 640 (1042)
T ss_pred CCCCCEEEecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeec
Confidence 3557899999988776655544432 1 56789999999999999998888889999999999999999999
Q ss_pred CCcEEEEecC------------------CCCHHHHHHHHhhccCCCCcceEEEEecC
Q psy576 114 TVRLVVNYDF------------------PSSAISYIHRIGRAGRGGREGKAVTFFTK 152 (159)
Q Consensus 114 ~~~~vi~~~~------------------~~~~~~~~q~~GR~~R~g~~g~~~~~~~~ 152 (159)
.+.+||..+. |-|.++--||.||+||.| +|.|+-+|+.
T Consensus 641 gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~-pG~cYRlYTe 696 (1042)
T KOG0924|consen 641 GIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTG-PGTCYRLYTE 696 (1042)
T ss_pred ceEEEEecCceeeeecccccccceeEEEechhccchhhccccCCCC-Ccceeeehhh
Confidence 9999996543 346777889999999995 8999999876
No 128
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=98.93 E-value=8.9e-09 Score=70.17 Aligned_cols=111 Identities=26% Similarity=0.354 Sum_probs=74.8
Q ss_pred HHHHhcCCCCCEEEEecchHHHHHHHHHHHhCCC--ceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeC--CcccccccC
Q psy576 38 DETILLGIEPPVLVFVQSKERAQELYNELIYDGI--NVDVIHSDRTQKQRDNVVRSFRTGRIWILITTE--LLGRGIDFR 113 (159)
Q Consensus 38 ~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~--~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~--~~~~g~~i~ 113 (159)
.+++.. .++.++||++|.+.++.+.+.+..... ....+.. ...+..++++.|+.++-.||+++. ...+|+|+|
T Consensus 2 ~~l~~~-~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~ 78 (167)
T PF13307_consen 2 LELISA-VPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFP 78 (167)
T ss_dssp HHHHHC-CSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--E
T ss_pred hHHHhc-CCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCC
Confidence 345555 458899999999999999999876531 2233333 366788899999999999999998 999999999
Q ss_pred C--CcEEEEecCCCC------------------------------HHHHHHHHhhccCCCCcceEEEEec
Q psy576 114 T--VRLVVNYDFPSS------------------------------AISYIHRIGRAGRGGREGKAVTFFT 151 (159)
Q Consensus 114 ~--~~~vi~~~~~~~------------------------------~~~~~q~~GR~~R~g~~g~~~~~~~ 151 (159)
+ ++.||..+.|.. .....|.+||+-|..+.--++++.+
T Consensus 79 ~~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD 148 (167)
T PF13307_consen 79 GDLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLD 148 (167)
T ss_dssp CESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEES
T ss_pred CchhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEc
Confidence 6 778888777742 1124788999999875543444443
No 129
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=98.90 E-value=8.8e-09 Score=85.87 Aligned_cols=111 Identities=23% Similarity=0.288 Sum_probs=88.2
Q ss_pred CCCCCEEEEecchHHHHHHHHHHHhC----------------------------CCc-------------eEEEecCCCH
Q psy576 44 GIEPPVLVFVQSKERAQELYNELIYD----------------------------GIN-------------VDVIHSDRTQ 82 (159)
Q Consensus 44 ~~~~~~lif~~~~~~~~~l~~~l~~~----------------------------~~~-------------~~~~~~~~~~ 82 (159)
.+.-|+++|+-++..|+..+..+... +++ +.++|+++-|
T Consensus 377 ~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP 456 (1041)
T COG4581 377 DNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLP 456 (1041)
T ss_pred hcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccch
Confidence 35668999999999988655544310 111 5688999999
Q ss_pred HHHHHHHHHHhcCCeeEEEEeCCcccccccCCCcEEEE----ec----CCCCHHHHHHHHhhccCCC--CcceEEEEecC
Q psy576 83 KQRDNVVRSFRTGRIWILITTELLGRGIDFRTVRLVVN----YD----FPSSAISYIHRIGRAGRGG--REGKAVTFFTK 152 (159)
Q Consensus 83 ~~r~~~~~~f~~~~~~vlv~t~~~~~g~~i~~~~~vi~----~~----~~~~~~~~~q~~GR~~R~g--~~g~~~~~~~~ 152 (159)
..+..+...|+.|-.+|+.+|.+.+.|+|.|.-++|+- ++ ..-++.+|.|+.||+||.| ..|.+++...+
T Consensus 457 ~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~ 536 (1041)
T COG4581 457 AIKELVEELFQEGLVKVVFATETFAIGINMPARTVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPP 536 (1041)
T ss_pred HHHHHHHHHHhccceeEEeehhhhhhhcCCcccceeeeeeEEecCCceeecChhHHHHhhhhhccccccccceEEEecCC
Confidence 99999999999999999999999999999999887763 21 1237999999999999999 34888877555
Q ss_pred CC
Q psy576 153 QD 154 (159)
Q Consensus 153 ~~ 154 (159)
.+
T Consensus 537 ~~ 538 (1041)
T COG4581 537 FE 538 (1041)
T ss_pred CC
Confidence 44
No 130
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=98.89 E-value=3.5e-08 Score=82.56 Aligned_cols=106 Identities=22% Similarity=0.283 Sum_probs=77.5
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhC--CCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCcccccccCCCc--EEEE
Q psy576 45 IEPPVLVFVQSKERAQELYNELIYD--GINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGRGIDFRTVR--LVVN 120 (159)
Q Consensus 45 ~~~~~lif~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~g~~i~~~~--~vi~ 120 (159)
.+++++||++|.+.++.++..|... ......+..+.. ..|.++++.|++++..||++|+...+|+|+|+.. .||.
T Consensus 673 ~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI 751 (850)
T TIGR01407 673 TSPKILVLFTSYEMLHMVYDMLNELPEFEGYEVLAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVI 751 (850)
T ss_pred cCCCEEEEeCCHHHHHHHHHHHhhhccccCceEEecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEE
Confidence 5578999999999999999998752 112223334333 5788899999999999999999999999999755 5565
Q ss_pred ecCCCC------------------------------HHHHHHHHhhccCCCCcceEEEEec
Q psy576 121 YDFPSS------------------------------AISYIHRIGRAGRGGREGKAVTFFT 151 (159)
Q Consensus 121 ~~~~~~------------------------------~~~~~q~~GR~~R~g~~g~~~~~~~ 151 (159)
...|.. ...+.|.+||+-|.....-++++.+
T Consensus 752 ~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD 812 (850)
T TIGR01407 752 PRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVILD 812 (850)
T ss_pred eCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEEEEc
Confidence 555531 1225788999999875433455544
No 131
>KOG0949|consensus
Probab=98.87 E-value=5.8e-09 Score=85.66 Aligned_cols=77 Identities=32% Similarity=0.478 Sum_probs=66.9
Q ss_pred eEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCcccccccCCCcEEEEec-CCCCHHHHHHHHhhccCCC--CcceEEEE
Q psy576 73 VDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGRGIDFRTVRLVVNYD-FPSSAISYIHRIGRAGRGG--REGKAVTF 149 (159)
Q Consensus 73 ~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~g~~i~~~~~vi~~~-~~~~~~~~~q~~GR~~R~g--~~g~~~~~ 149 (159)
++++|++++..+|..+.-.|+.|.+.||++|..++.|+|.|.-++|+--| .--++-.|-||.||+||.| -.|.++.+
T Consensus 965 iG~HHaglNr~yR~~VEvLFR~g~L~VlfaT~TLsLGiNMPCrTVvF~gDsLQL~plny~QmaGRAGRRGFD~lGnV~Fm 1044 (1330)
T KOG0949|consen 965 IGVHHAGLNRKYRSLVEVLFRQGHLQVLFATETLSLGINMPCRTVVFAGDSLQLDPLNYKQMAGRAGRRGFDTLGNVVFM 1044 (1330)
T ss_pred ccccccccchHHHHHHHHHhhcCceEEEEEeeehhcccCCCceeEEEeccccccCchhHHhhhccccccccccccceEEE
Confidence 78999999999999999999999999999999999999999888776554 3357889999999999998 34666554
No 132
>KOG1015|consensus
Probab=98.86 E-value=1.7e-08 Score=82.88 Aligned_cols=136 Identities=18% Similarity=0.105 Sum_probs=113.6
Q ss_pred hhhhccceeeeecCCCCChHHHHHHHHh--cCCCCCEEEEecchHHHHHHHHHHHhC----------------------C
Q psy576 15 RVKSNLARMYRETEGAGSPVQAQDETIL--LGIEPPVLVFVQSKERAQELYNELIYD----------------------G 70 (159)
Q Consensus 15 ~~~~~i~~~~~~~~~~~~k~~~l~~~~~--~~~~~~~lif~~~~~~~~~l~~~l~~~----------------------~ 70 (159)
++.+.+...-.....+.+|+-+|.+++. ..-+.++|||..+....+-|-.+|.-- |
T Consensus 1109 w~kd~v~e~d~~v~~~SgKmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~G 1188 (1567)
T KOG1015|consen 1109 WYKDFVTEADAEVLEHSGKMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRG 1188 (1567)
T ss_pred hHHhhhhhhhhhhhhcCcceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecC
Confidence 5556666666666677899999999986 346789999999999999988887421 2
Q ss_pred CceEEEecCCCHHHHHHHHHHHhcCC----eeEEEEeCCcccccccCCCcEEEEecCCCCHHHHHHHHhhccCCCCcceE
Q psy576 71 INVDVIHSDRTQKQRDNVVRSFRTGR----IWILITTELLGRGIDFRTVRLVVNYDFPSSAISYIHRIGRAGRGGREGKA 146 (159)
Q Consensus 71 ~~~~~~~~~~~~~~r~~~~~~f~~~~----~~vlv~t~~~~~g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~g~~ 146 (159)
..-..+.|......|....+.|++-. .-.||+|.+.+.|+|+-+++-||++|..|++..-.|.+=|++|+|+..+|
T Consensus 1189 kDyyriDGst~s~~R~k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPv 1268 (1567)
T KOG1015|consen 1189 KDYYRLDGSTTSQSRKKWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPV 1268 (1567)
T ss_pred CceEEecCcccHHHHHHHHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCce
Confidence 33567788899999999999998732 34899999999999999999999999999999999999999999999999
Q ss_pred EEEe
Q psy576 147 VTFF 150 (159)
Q Consensus 147 ~~~~ 150 (159)
++|=
T Consensus 1269 yiYR 1272 (1567)
T KOG1015|consen 1269 YIYR 1272 (1567)
T ss_pred eehh
Confidence 8873
No 133
>KOG1123|consensus
Probab=98.77 E-value=1.8e-07 Score=72.55 Aligned_cols=130 Identities=16% Similarity=0.146 Sum_probs=93.6
Q ss_pred ccchhhHHhhhhccceeeeecCCCCChHHHHHHHHh--cCCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHH
Q psy576 7 HTNPALKRRVKSNLARMYRETEGAGSPVQAQDETIL--LGIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQ 84 (159)
Q Consensus 7 ~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~~~~--~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 84 (159)
.+..++++.++++.+......--+..|+..-.=++. ..++.++|||....- ++.++-.+.+ -.+++|..++.+
T Consensus 502 Mt~eFy~eYL~~~t~kr~lLyvMNP~KFraCqfLI~~HE~RgDKiIVFsDnvf---ALk~YAikl~--KpfIYG~Tsq~E 576 (776)
T KOG1123|consen 502 MTPEFYREYLRENTRKRMLLYVMNPNKFRACQFLIKFHERRGDKIIVFSDNVF---ALKEYAIKLG--KPFIYGPTSQNE 576 (776)
T ss_pred CCHHHHHHHHhhhhhhhheeeecCcchhHHHHHHHHHHHhcCCeEEEEeccHH---HHHHHHHHcC--CceEECCCchhH
Confidence 344566666666555433333333566665333333 347789999987765 4444433332 358999999999
Q ss_pred HHHHHHHHhc-CCeeEEEEeCCcccccccCCCcEEEEecCC-CCHHHHHHHHhhccCCC
Q psy576 85 RDNVVRSFRT-GRIWILITTELLGRGIDFRTVRLVVNYDFP-SSAISYIHRIGRAGRGG 141 (159)
Q Consensus 85 r~~~~~~f~~-~~~~vlv~t~~~~~g~~i~~~~~vi~~~~~-~~~~~~~q~~GR~~R~g 141 (159)
|.++++.|+- .+..-+..+.++...+|+|.++++|..+.- .|..+-.||.||..|..
T Consensus 577 Rm~ILqnFq~n~~vNTIFlSKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAK 635 (776)
T KOG1123|consen 577 RMKILQNFQTNPKVNTIFLSKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAK 635 (776)
T ss_pred HHHHHHhcccCCccceEEEeeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHh
Confidence 9999999987 467788888999999999999999987654 47788899999999976
No 134
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=98.75 E-value=4.8e-08 Score=79.51 Aligned_cols=97 Identities=31% Similarity=0.429 Sum_probs=75.0
Q ss_pred HHHHHHHhC--CCceEEEecCCCH--HHHHHHHHHHhcCCeeEEEEeCCcccccccCCCcEEEEecCC------C-----
Q psy576 61 ELYNELIYD--GINVDVIHSDRTQ--KQRDNVVRSFRTGRIWILITTELLGRGIDFRTVRLVVNYDFP------S----- 125 (159)
Q Consensus 61 ~l~~~l~~~--~~~~~~~~~~~~~--~~r~~~~~~f~~~~~~vlv~t~~~~~g~~i~~~~~vi~~~~~------~----- 125 (159)
++.+.|... +.++..+.++... ..-+..++.|.+|+.+|||.|+++..|.|+|+++.|...+.. +
T Consensus 495 rieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~E 574 (730)
T COG1198 495 RIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASE 574 (730)
T ss_pred HHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHH
Confidence 444444433 5567777777644 335678999999999999999999999999999987755432 1
Q ss_pred -CHHHHHHHHhhccCCCCcceEEEEecCCCccc
Q psy576 126 -SAISYIHRIGRAGRGGREGKAVTFFTKQDAPL 157 (159)
Q Consensus 126 -~~~~~~q~~GR~~R~g~~g~~~~~~~~~~~~~ 157 (159)
....+.|-.||+||.+.+|.+++.....|...
T Consensus 575 r~fqll~QvaGRAgR~~~~G~VvIQT~~P~hp~ 607 (730)
T COG1198 575 RTFQLLMQVAGRAGRAGKPGEVVIQTYNPDHPA 607 (730)
T ss_pred HHHHHHHHHHhhhccCCCCCeEEEEeCCCCcHH
Confidence 35567889999999999999999998888654
No 135
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=98.73 E-value=2.7e-07 Score=75.99 Aligned_cols=82 Identities=20% Similarity=0.220 Sum_probs=58.8
Q ss_pred CChHHHHHHHHh--cCCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCC-CHHHHHHHHHHHhcCCeeEEEEeCCcc
Q psy576 31 GSPVQAQDETIL--LGIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDR-TQKQRDNVVRSFRTGRIWILITTELLG 107 (159)
Q Consensus 31 ~~k~~~l~~~~~--~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~~r~~~~~~f~~~~~~vlv~t~~~~ 107 (159)
..|...+.+.+. ...+.|+||-|.|.+..+.++..|.+.+++.-+++... ..+.-.+++.. .-..-.|.|||++++
T Consensus 407 ~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIA~-AG~~G~VTIATNMAG 485 (870)
T CHL00122 407 LSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKPENVRRESEIVAQ-AGRKGSITIATNMAG 485 (870)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCCccceeeCCCccchhHHHHHHh-cCCCCcEEEeccccC
Confidence 345555554443 24678999999999999999999999999988888863 21222223332 223456999999999
Q ss_pred cccccC
Q psy576 108 RGIDFR 113 (159)
Q Consensus 108 ~g~~i~ 113 (159)
||.||.
T Consensus 486 RGTDI~ 491 (870)
T CHL00122 486 RGTDII 491 (870)
T ss_pred CCcCee
Confidence 999984
No 136
>KOG0926|consensus
Probab=98.72 E-value=5e-08 Score=79.00 Aligned_cols=80 Identities=21% Similarity=0.294 Sum_probs=63.1
Q ss_pred eEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCcccccccCCCcEEEEecCCC------------------CHHHHHHHH
Q psy576 73 VDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGRGIDFRTVRLVVNYDFPS------------------SAISYIHRI 134 (159)
Q Consensus 73 ~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~g~~i~~~~~vi~~~~~~------------------~~~~~~q~~ 134 (159)
+.++|+=++.+.+.++++.--.|..-++|+|++++..+.||++.+|+..+.-+ |-++--||+
T Consensus 607 vLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRA 686 (1172)
T KOG0926|consen 607 VLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRA 686 (1172)
T ss_pred EeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhc
Confidence 45556666666666666666678878999999999999999999999755321 456678999
Q ss_pred hhccCCCCcceEEEEecCC
Q psy576 135 GRAGRGGREGKAVTFFTKQ 153 (159)
Q Consensus 135 GR~~R~g~~g~~~~~~~~~ 153 (159)
||+||.| +|.||.+|+..
T Consensus 687 GRAGRtg-pGHcYRLYSSA 704 (1172)
T KOG0926|consen 687 GRAGRTG-PGHCYRLYSSA 704 (1172)
T ss_pred cccCCCC-CCceeehhhhH
Confidence 9999996 78999998753
No 137
>KOG1000|consensus
Probab=98.72 E-value=1.1e-07 Score=73.41 Aligned_cols=119 Identities=18% Similarity=0.209 Sum_probs=99.9
Q ss_pred ChHHHHHHHHhc------CCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcC-CeeEEE-Ee
Q psy576 32 SPVQAQDETILL------GIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTG-RIWILI-TT 103 (159)
Q Consensus 32 ~k~~~l~~~~~~------~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~-~~~vlv-~t 103 (159)
.|...+.+.+.. ....+.+|||--....+.|...+.++++....+.|..++.+|....+.|+.+ +..|-| +.
T Consensus 472 aK~~av~eyi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsI 551 (689)
T KOG1000|consen 472 AKAAAVCEYILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSI 551 (689)
T ss_pred cccHHHHHHHHhCcccccCCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEE
Confidence 444445555542 3456899999999999999999999999999999999999999999999985 455544 66
Q ss_pred CCcccccccCCCcEEEEecCCCCHHHHHHHHhhccCCCCcceEEEEe
Q psy576 104 ELLGRGIDFRTVRLVVNYDFPSSAISYIHRIGRAGRGGREGKAVTFF 150 (159)
Q Consensus 104 ~~~~~g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~g~~~~~~ 150 (159)
.+++.|+++...+.|+....+|++..++|.=.|+.|.|++..+.+++
T Consensus 552 tA~gvGLt~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQkssV~v~y 598 (689)
T KOG1000|consen 552 TAAGVGLTLTAASVVVFAELHWNPGVLLQAEDRAHRIGQKSSVFVQY 598 (689)
T ss_pred eecccceeeeccceEEEEEecCCCceEEechhhhhhccccceeeEEE
Confidence 88999999999999999999999999999999999999776554443
No 138
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=98.71 E-value=2.5e-07 Score=75.64 Aligned_cols=105 Identities=17% Similarity=0.139 Sum_probs=77.6
Q ss_pred CCCEEEEecchHHHHHHHHHHHhC-----CCceEEEecCCCHH---------------------HHHHHHHHHhc-CCee
Q psy576 46 EPPVLVFVQSKERAQELYNELIYD-----GINVDVIHSDRTQK---------------------QRDNVVRSFRT-GRIW 98 (159)
Q Consensus 46 ~~~~lif~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~---------------------~r~~~~~~f~~-~~~~ 98 (159)
..+++|||.++..|..+++.|.+. +.....+++..+.. ....+++.|++ +.++
T Consensus 514 ~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ 593 (667)
T TIGR00348 514 KFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPK 593 (667)
T ss_pred cCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCce
Confidence 478999999999999999887554 23344555543322 22467888876 6789
Q ss_pred EEEEeCCcccccccCCCcEEEEecCCCCHHHHHHHHhhccCC-C---CcceEEEEec
Q psy576 99 ILITTELLGRGIDFRTVRLVVNYDFPSSAISYIHRIGRAGRG-G---REGKAVTFFT 151 (159)
Q Consensus 99 vlv~t~~~~~g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~-g---~~g~~~~~~~ 151 (159)
|||+++++..|+|.|.+++++...+..+. .++|++||+.|. . ..|.++-|+.
T Consensus 594 ilIVvdmllTGFDaP~l~tLyldKplk~h-~LlQai~R~nR~~~~~K~~g~IvDy~g 649 (667)
T TIGR00348 594 LLIVVDMLLTGFDAPILNTLYLDKPLKYH-GLLQAIARTNRIDGKDKTFGLIVDYRG 649 (667)
T ss_pred EEEEEcccccccCCCccceEEEecccccc-HHHHHHHHhccccCCCCCCEEEEECcC
Confidence 99999999999999999988887665554 579999999993 3 2354554443
No 139
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.70 E-value=1.6e-07 Score=76.38 Aligned_cols=94 Identities=23% Similarity=0.296 Sum_probs=75.6
Q ss_pred CCCEEEEecchHHHHHHHHHHHhC-----CCceEEEecCCCHHHHHHHHHHHhc--CCeeEEEEeCCcccccccCCCcEE
Q psy576 46 EPPVLVFVQSKERAQELYNELIYD-----GINVDVIHSDRTQKQRDNVVRSFRT--GRIWILITTELLGRGIDFRTVRLV 118 (159)
Q Consensus 46 ~~~~lif~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~--~~~~vlv~t~~~~~g~~i~~~~~v 118 (159)
.+++||||.+..+|+.+...|.+. +--+..++|.- ++-...++.|.. .-..|.|+.+++..|+|+|.+..+
T Consensus 426 ~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~--~~~q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nl 503 (875)
T COG4096 426 IGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDA--EQAQALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNL 503 (875)
T ss_pred cCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccc--hhhHHHHHHHHhcCCCCceEEehhhhhcCCCchheeee
Confidence 468999999999999999999765 23366777753 233334555544 346799999999999999999999
Q ss_pred EEecCCCCHHHHHHHHhhccCCC
Q psy576 119 VNYDFPSSAISYIHRIGRAGRGG 141 (159)
Q Consensus 119 i~~~~~~~~~~~~q~~GR~~R~g 141 (159)
+.+..-.|...|.||+||.-|..
T Consensus 504 VF~r~VrSktkF~QMvGRGTRl~ 526 (875)
T COG4096 504 VFDRKVRSKTKFKQMVGRGTRLC 526 (875)
T ss_pred eehhhhhhHHHHHHHhcCccccC
Confidence 99988899999999999999954
No 140
>KOG0386|consensus
Probab=98.65 E-value=8.9e-08 Score=78.92 Aligned_cols=121 Identities=17% Similarity=0.194 Sum_probs=107.2
Q ss_pred CCChHHHHHHHHhc--CCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCC---eeEEEEeC
Q psy576 30 AGSPVQAQDETILL--GIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGR---IWILITTE 104 (159)
Q Consensus 30 ~~~k~~~l~~~~~~--~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~---~~vlv~t~ 104 (159)
..+|+++|-+++.+ ..+++++.||.-+.-.+-+-.+|.-.++.-..+.|.....+|-..++.|+... ...|.+|.
T Consensus 708 ~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~Fllstr 787 (1157)
T KOG0386|consen 708 VSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTR 787 (1157)
T ss_pred hccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeec
Confidence 47899999998874 35689999999999888889999888888999999999999999999999843 45677999
Q ss_pred CcccccccCCCcEEEEecCCCCHHHHHHHHhhccCCCCcceEEEEe
Q psy576 105 LLGRGIDFRTVRLVVNYDFPSSAISYIHRIGRAGRGGREGKAVTFF 150 (159)
Q Consensus 105 ~~~~g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~g~~~~~~ 150 (159)
..+.|+|++.++.||.+|..|++....|+--|+.|.|+...+-++.
T Consensus 788 agglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~r 833 (1157)
T KOG0386|consen 788 AGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLR 833 (1157)
T ss_pred ccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeee
Confidence 9999999999999999999999999999999999999877766654
No 141
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.61 E-value=8.2e-07 Score=75.06 Aligned_cols=107 Identities=19% Similarity=0.236 Sum_probs=78.3
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhCCC--ceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCcccccccCC--CcEEEE
Q psy576 45 IEPPVLVFVQSKERAQELYNELIYDGI--NVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGRGIDFRT--VRLVVN 120 (159)
Q Consensus 45 ~~~~~lif~~~~~~~~~l~~~l~~~~~--~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~g~~i~~--~~~vi~ 120 (159)
.+++++|+++|.+.++.+++.|..... ....+.-+++...|.++++.|++++-.||++|....+|+|+|+ ++.||.
T Consensus 751 ~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI 830 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSCLVI 830 (928)
T ss_pred CCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEEEEE
Confidence 567899999999999999999875422 1223333444456788999999988889999999999999996 477777
Q ss_pred ecCCC----C--------------------------HHHHHHHHhhccCCCCcceEEEEec
Q psy576 121 YDFPS----S--------------------------AISYIHRIGRAGRGGREGKAVTFFT 151 (159)
Q Consensus 121 ~~~~~----~--------------------------~~~~~q~~GR~~R~g~~g~~~~~~~ 151 (159)
...|. + ...+.|.+||+-|.....-++++.+
T Consensus 831 ~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD 891 (928)
T PRK08074 831 VRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLD 891 (928)
T ss_pred ecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEec
Confidence 66553 1 1225788999999874433455444
No 142
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=98.58 E-value=1.4e-06 Score=71.29 Aligned_cols=111 Identities=21% Similarity=0.299 Sum_probs=79.6
Q ss_pred HHHHHhcCCCCCEEEEecchHHHHHHHHHHHhCCCc-eEEEecCCCHHHHHHHHHHHhcCCe-eEEEEeCCcccccccCC
Q psy576 37 QDETILLGIEPPVLVFVQSKERAQELYNELIYDGIN-VDVIHSDRTQKQRDNVVRSFRTGRI-WILITTELLGRGIDFRT 114 (159)
Q Consensus 37 l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~~~r~~~~~~f~~~~~-~vlv~t~~~~~g~~i~~ 114 (159)
+.+++.. .+++++||++|.+.+..+.+.+...... ....+| ...+.+.++.|..+.- .++|++..+.+|+|+|+
T Consensus 471 i~~~~~~-~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~---~~~~~~~l~~f~~~~~~~~lv~~gsf~EGVD~~g 546 (654)
T COG1199 471 LREILKA-SPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQG---EDEREELLEKFKASGEGLILVGGGSFWEGVDFPG 546 (654)
T ss_pred HHHHHhh-cCCCEEEEeccHHHHHHHHHHHhhcCccceeeecC---CCcHHHHHHHHHHhcCCeEEEeeccccCcccCCC
Confidence 3334444 4558999999999999999999876542 334444 3444588899888654 89999999999999986
Q ss_pred --CcEEEEecCCCC------------------------------HHHHHHHHhhccCCCCcceEEEEec
Q psy576 115 --VRLVVNYDFPSS------------------------------AISYIHRIGRAGRGGREGKAVTFFT 151 (159)
Q Consensus 115 --~~~vi~~~~~~~------------------------------~~~~~q~~GR~~R~g~~g~~~~~~~ 151 (159)
+..||..+.|.. .....|.+||+-|.-+..-++++.+
T Consensus 547 ~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD 615 (654)
T COG1199 547 DALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLD 615 (654)
T ss_pred CCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEec
Confidence 467777766642 3346899999999764433444444
No 143
>KOG4439|consensus
Probab=98.54 E-value=1.3e-06 Score=70.03 Aligned_cols=105 Identities=14% Similarity=0.159 Sum_probs=87.0
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhc--CCeeEEE-EeCCcccccccCCCcEEEEe
Q psy576 45 IEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRT--GRIWILI-TTELLGRGIDFRTVRLVVNY 121 (159)
Q Consensus 45 ~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~--~~~~vlv-~t~~~~~g~~i~~~~~vi~~ 121 (159)
.+.+++|...=.+...-+...+++.+.....+||.....+|.++++.|+. |..+|++ +=.+.+-|+|+-..+|++..
T Consensus 745 skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilv 824 (901)
T KOG4439|consen 745 SKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILV 824 (901)
T ss_pred ccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEE
Confidence 44555554444444555667888889999999999999999999999976 5466665 44889999999999999999
Q ss_pred cCCCCHHHHHHHHhhccCCCCcceEEEE
Q psy576 122 DFPSSAISYIHRIGRAGRGGREGKAVTF 149 (159)
Q Consensus 122 ~~~~~~~~~~q~~GR~~R~g~~g~~~~~ 149 (159)
|.-|+++.-.|.+.|..|.|++..++++
T Consensus 825 DlHWNPaLEqQAcDRIYR~GQkK~V~Ih 852 (901)
T KOG4439|consen 825 DLHWNPALEQQACDRIYRMGQKKDVFIH 852 (901)
T ss_pred ecccCHHHHHHHHHHHHHhcccCceEEE
Confidence 9999999999999999999998887765
No 144
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=98.46 E-value=9.2e-06 Score=62.94 Aligned_cols=141 Identities=18% Similarity=0.196 Sum_probs=110.3
Q ss_pred hhhhccceeeeecCCC------CChHHHHHH-----HHhcCCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHH
Q psy576 15 RVKSNLARMYRETEGA------GSPVQAQDE-----TILLGIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQK 83 (159)
Q Consensus 15 ~~~~~i~~~~~~~~~~------~~k~~~l~~-----~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 83 (159)
....+++|.|...+.. +.+++...+ +......+.+|||++|--+--.+..+|++.++..+.+++..+..
T Consensus 258 ~v~~~v~Q~F~r~~~~s~~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~ 337 (442)
T PF06862_consen 258 QVVVQVRQVFQRFDCSSPADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNS 337 (442)
T ss_pred ccccCCceEEEEecCCCcchhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHH
Confidence 3455777888775442 334444332 22234557899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCeeEEEEeCC--cccccccCCCcEEEEecCCCCHHHHHHHHhhccCCCC------cceEEEEecCCCc
Q psy576 84 QRDNVVRSFRTGRIWILITTEL--LGRGIDFRTVRLVVNYDFPSSAISYIHRIGRAGRGGR------EGKAVTFFTKQDA 155 (159)
Q Consensus 84 ~r~~~~~~f~~~~~~vlv~t~~--~~~g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~------~g~~~~~~~~~~~ 155 (159)
+..+....|..|+..+|+.|.= .-+-..+.++..||.|++|..+.=|...++-.+.... ...|.++++.-|.
T Consensus 338 ~isRAR~~F~~G~~~iLL~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~ 417 (442)
T PF06862_consen 338 DISRARSQFFHGRKPILLYTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDA 417 (442)
T ss_pred HHHHHHHHHHcCCceEEEEEhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHH
Confidence 9999999999999999999963 4455677889999999999999999998876665543 4678888776553
No 145
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.46 E-value=4.4e-06 Score=69.82 Aligned_cols=105 Identities=21% Similarity=0.290 Sum_probs=75.2
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCcccccccCC--CcEEEEec
Q psy576 45 IEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGRGIDFRT--VRLVVNYD 122 (159)
Q Consensus 45 ~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~g~~i~~--~~~vi~~~ 122 (159)
.+++++|+++|.+.++.+++.|.....++ ...|... .+.++++.|++++-.||++|....+|+|+|. ...+|...
T Consensus 646 ~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~~sFwEGVD~p~~~~~~viI~k 722 (820)
T PRK07246 646 LQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGLGSFWEGVDFVQADRMIEVITR 722 (820)
T ss_pred cCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEecchhhCCCCCCCCCeEEEEEec
Confidence 56889999999999999999987654443 5555322 3456899999988889999999999999973 44455544
Q ss_pred CCC----C--------------------------HHHHHHHHhhccCCCCcceEEEEecC
Q psy576 123 FPS----S--------------------------AISYIHRIGRAGRGGREGKAVTFFTK 152 (159)
Q Consensus 123 ~~~----~--------------------------~~~~~q~~GR~~R~g~~g~~~~~~~~ 152 (159)
.|. + ...+.|.+||+-|.....-++++.++
T Consensus 723 LPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~ilD~ 782 (820)
T PRK07246 723 LPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLILDR 782 (820)
T ss_pred CCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEEECC
Confidence 442 2 22268899999998743324555443
No 146
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=98.45 E-value=4.4e-06 Score=69.16 Aligned_cols=82 Identities=23% Similarity=0.256 Sum_probs=59.3
Q ss_pred CChHHHHHHHHh--cCCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHH-HHHHHHhcCCeeEEEEeCCcc
Q psy576 31 GSPVQAQDETIL--LGIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRD-NVVRSFRTGRIWILITTELLG 107 (159)
Q Consensus 31 ~~k~~~l~~~~~--~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~-~~~~~f~~~~~~vlv~t~~~~ 107 (159)
..|...+.+.+. ...+.|+||-+.|.+..+.++..|.+.+++..+++......+++ +++.. .-..-.|.|||++++
T Consensus 422 ~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIa~-AG~~GaVTIATNMAG 500 (939)
T PRK12902 422 IAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQEQGIPHNLLNAKPENVEREAEIVAQ-AGRKGAVTIATNMAG 500 (939)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHHcCCchheeeCCCcchHhHHHHHHh-cCCCCcEEEeccCCC
Confidence 356666555554 24678999999999999999999999999988888862222222 23322 222356999999999
Q ss_pred cccccC
Q psy576 108 RGIDFR 113 (159)
Q Consensus 108 ~g~~i~ 113 (159)
+|.||.
T Consensus 501 RGTDIk 506 (939)
T PRK12902 501 RGTDII 506 (939)
T ss_pred CCcCEe
Confidence 999884
No 147
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=98.44 E-value=5.9e-06 Score=67.98 Aligned_cols=105 Identities=20% Similarity=0.302 Sum_probs=73.7
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhc----CCeeEEEEeCCcccccccCC--CcEE
Q psy576 45 IEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRT----GRIWILITTELLGRGIDFRT--VRLV 118 (159)
Q Consensus 45 ~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~----~~~~vlv~t~~~~~g~~i~~--~~~v 118 (159)
..+.++||++|.+.++.++..|....-.....+|. ..+..+++.|++ ++-.||++|....+|+|+|+ ++.|
T Consensus 533 ~~gg~LVlFtSy~~l~~v~~~l~~~~~~~ll~Q~~---~~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~v 609 (697)
T PRK11747 533 KHKGSLVLFASRRQMQKVADLLPRDLRLMLLVQGD---QPRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQV 609 (697)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHhcCCcEEEeCC---chHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCceEEE
Confidence 34558999999999999999886432123455664 246677776664 67789999999999999986 6788
Q ss_pred EEecCCC----CH--------------------------HHHHHHHhhccCCCCcceEEEEecC
Q psy576 119 VNYDFPS----SA--------------------------ISYIHRIGRAGRGGREGKAVTFFTK 152 (159)
Q Consensus 119 i~~~~~~----~~--------------------------~~~~q~~GR~~R~g~~g~~~~~~~~ 152 (159)
|....|. ++ ..+.|.+||+-|....--++++.++
T Consensus 610 II~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ilD~ 673 (697)
T PRK11747 610 IITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTILDR 673 (697)
T ss_pred EEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEEcc
Confidence 8766553 11 1257888999998644334444443
No 148
>KOG1002|consensus
Probab=98.41 E-value=2.8e-06 Score=65.99 Aligned_cols=116 Identities=14% Similarity=0.113 Sum_probs=97.3
Q ss_pred CChHHHHHHHHh----cCCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcC-CeeEEE-EeC
Q psy576 31 GSPVQAQDETIL----LGIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTG-RIWILI-TTE 104 (159)
Q Consensus 31 ~~k~~~l~~~~~----~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~-~~~vlv-~t~ 104 (159)
.-|.+.|.+.+- ....-+.|||..-.+..+-+.=.|.+.|+.++-+-|+|++..|...++.|.+. .+.|++ +-.
T Consensus 619 STKIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLk 698 (791)
T KOG1002|consen 619 STKIEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLK 698 (791)
T ss_pred hhHHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEec
Confidence 456777666553 33334789999999999988888989999999999999999999999999884 566554 558
Q ss_pred CcccccccCCCcEEEEecCCCCHHHHHHHHhhccCCCCcceE
Q psy576 105 LLGRGIDFRTVRLVVNYDFPSSAISYIHRIGRAGRGGREGKA 146 (159)
Q Consensus 105 ~~~~g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~g~~ 146 (159)
+.+..+|+-.+++|+++|+=|+++.-.|...|..|.|+..++
T Consensus 699 AGGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPv 740 (791)
T KOG1002|consen 699 AGGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPV 740 (791)
T ss_pred cCceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccce
Confidence 898999999999999999999999999999999999965544
No 149
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=98.39 E-value=3e-06 Score=70.54 Aligned_cols=88 Identities=28% Similarity=0.495 Sum_probs=73.6
Q ss_pred ChHHHHHHHHhcCCCCCEEEEecc---hHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEe----C
Q psy576 32 SPVQAQDETILLGIEPPVLVFVQS---KERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITT----E 104 (159)
Q Consensus 32 ~k~~~l~~~~~~~~~~~~lif~~~---~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t----~ 104 (159)
...+.+.+++... +.-.|||++. .+.+++++++|+..|+++..+|+. ..+.++.|..|+.++||+. .
T Consensus 322 ~~~e~~~elvk~l-G~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~-----~~~~le~F~~GeidvLVGvAsyYG 395 (1187)
T COG1110 322 ESLEKVVELVKKL-GDGGLIFVPIDYGREKAEELAEYLRSHGINAELIHAE-----KEEALEDFEEGEVDVLVGVASYYG 395 (1187)
T ss_pred ccHHHHHHHHHHh-CCCeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeecc-----chhhhhhhccCceeEEEEeccccc
Confidence 4555566666653 3368999999 999999999999999999999983 2678999999999999976 4
Q ss_pred CcccccccCC-CcEEEEecCCC
Q psy576 105 LLGRGIDFRT-VRLVVNYDFPS 125 (159)
Q Consensus 105 ~~~~g~~i~~-~~~vi~~~~~~ 125 (159)
++-+|+|+|. +..+|.+++|+
T Consensus 396 ~lVRGlDLP~rirYaIF~GvPk 417 (1187)
T COG1110 396 VLVRGLDLPHRIRYAVFYGVPK 417 (1187)
T ss_pred ceeecCCchhheeEEEEecCCc
Confidence 6999999997 78999999994
No 150
>KOG0925|consensus
Probab=98.30 E-value=6.7e-06 Score=63.82 Aligned_cols=118 Identities=21% Similarity=0.365 Sum_probs=85.0
Q ss_pred CChHHHHHHHH----hcCCCCCEEEEecchHHHHHHHHHHHhC---------CCceEEEecCCCHHHHHHHHHHHhc---
Q psy576 31 GSPVQAQDETI----LLGIEPPVLVFVQSKERAQELYNELIYD---------GINVDVIHSDRTQKQRDNVVRSFRT--- 94 (159)
Q Consensus 31 ~~k~~~l~~~~----~~~~~~~~lif~~~~~~~~~l~~~l~~~---------~~~~~~~~~~~~~~~r~~~~~~f~~--- 94 (159)
.+.++...+.+ .....+.+++|..+.++.+...+.+... ..++..+| +.+...+++....
T Consensus 234 rDylEaairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~ 309 (699)
T KOG0925|consen 234 RDYLEAAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRN 309 (699)
T ss_pred hhHHHHHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccC
Confidence 45555433333 2456788999999999988887776532 34677777 4444444444322
Q ss_pred C--CeeEEEEeCCcccccccCCCcEEEEecC------------------CCCHHHHHHHHhhccCCCCcceEEEEecCC
Q psy576 95 G--RIWILITTELLGRGIDFRTVRLVVNYDF------------------PSSAISYIHRIGRAGRGGREGKAVTFFTKQ 153 (159)
Q Consensus 95 ~--~~~vlv~t~~~~~g~~i~~~~~vi~~~~------------------~~~~~~~~q~~GR~~R~g~~g~~~~~~~~~ 153 (159)
| ..+|+|+|..++..+.++.+.+||.-++ |-|..+-.||.||+||. ++|.|+.++...
T Consensus 310 ~~~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLYte~ 387 (699)
T KOG0925|consen 310 GAYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEE 387 (699)
T ss_pred CCccceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEeecHH
Confidence 2 3579999999999999999999985332 34678889999999998 789999999754
No 151
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.27 E-value=1.4e-05 Score=66.03 Aligned_cols=107 Identities=20% Similarity=0.330 Sum_probs=76.7
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhCCC-------ceEEEecCCCHHHHHHHHHHHhc----CCeeEEEEe--CCcccccc
Q psy576 45 IEPPVLVFVQSKERAQELYNELIYDGI-------NVDVIHSDRTQKQRDNVVRSFRT----GRIWILITT--ELLGRGID 111 (159)
Q Consensus 45 ~~~~~lif~~~~~~~~~l~~~l~~~~~-------~~~~~~~~~~~~~r~~~~~~f~~----~~~~vlv~t--~~~~~g~~ 111 (159)
.++.++||++|.+.++.+.+.+.+.+. +..+.-+ -...++.++++.|+. ++-.||.++ ..+++|+|
T Consensus 521 ~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~-~~~~~~~~~l~~f~~~~~~~~gavL~av~gGk~sEGID 599 (705)
T TIGR00604 521 IPDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVET-KDAQETSDALERYKQAVSEGRGAVLLSVAGGKVSEGID 599 (705)
T ss_pred CCCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeC-CCcchHHHHHHHHHHHHhcCCceEEEEecCCcccCccc
Confidence 457899999999999999998865421 2233333 233577889999965 455699988 89999999
Q ss_pred cCC--CcEEEEecCCCC-H------------------------------HHHHHHHhhccCCCCcceEEEEecC
Q psy576 112 FRT--VRLVVNYDFPSS-A------------------------------ISYIHRIGRAGRGGREGKAVTFFTK 152 (159)
Q Consensus 112 i~~--~~~vi~~~~~~~-~------------------------------~~~~q~~GR~~R~g~~g~~~~~~~~ 152 (159)
+++ ++.||..+.|.. + ....|.+||+-|..+.--++++.+.
T Consensus 600 f~~~~~r~ViivGlPf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~a~~~v~QaiGR~IR~~~D~G~iillD~ 673 (705)
T TIGR00604 600 FCDDLGRAVIMVGIPYEYTESRILLARLEFLRDQYPIRENQDFYEFDAMRAVNQAIGRVIRHKDDYGSIVLLDK 673 (705)
T ss_pred cCCCCCcEEEEEccCCCCCCCHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHhCccccCcCceEEEEEEeh
Confidence 986 678888887751 0 1246889999998755435555553
No 152
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=98.25 E-value=2.4e-05 Score=63.46 Aligned_cols=115 Identities=13% Similarity=0.076 Sum_probs=80.5
Q ss_pred HHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcC----CeeEEEEeCCccccc
Q psy576 35 QAQDETILLGIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTG----RIWILITTELLGRGI 110 (159)
Q Consensus 35 ~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~----~~~vlv~t~~~~~g~ 110 (159)
+.+.+++.. .++.++|.+.|.+.+..+++.+...-.-...+.|..+ .+..+++.|+.. +-.||++|..+.+|+
T Consensus 460 ~~~~~~~~~-~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGv 536 (636)
T TIGR03117 460 LSTAAILRK-AQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGI 536 (636)
T ss_pred HHHHHHHHH-cCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCcccccc
Confidence 445555555 5678999999999999999998664223356666432 445678888874 688999999999999
Q ss_pred cc--------C--CCcEEEEecCCCC-------------------------HHHHHHHHhhccCCCCc--ceEEEEecC
Q psy576 111 DF--------R--TVRLVVNYDFPSS-------------------------AISYIHRIGRAGRGGRE--GKAVTFFTK 152 (159)
Q Consensus 111 ~i--------~--~~~~vi~~~~~~~-------------------------~~~~~q~~GR~~R~g~~--g~~~~~~~~ 152 (159)
|+ | .++.||+...|.. .-.+.|-+||.-|.... .-++.+.++
T Consensus 537 Dv~~~~~~p~~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~i~ilD~ 615 (636)
T TIGR03117 537 DLTHKPVSPDKDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRRIHMLDG 615 (636)
T ss_pred ccCCccCCCCCCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCceEEEEEeC
Confidence 99 2 3778887665532 22267889999998743 334444443
No 153
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=98.24 E-value=4.6e-05 Score=50.46 Aligned_cols=93 Identities=19% Similarity=0.290 Sum_probs=61.1
Q ss_pred HHHHHHHHHhCCC------ceEEEecCCCHHHHHHHHHHHhcCC-eeEEEEeCCcccccccCC--CcEEEEecCCCC---
Q psy576 59 AQELYNELIYDGI------NVDVIHSDRTQKQRDNVVRSFRTGR-IWILITTELLGRGIDFRT--VRLVVNYDFPSS--- 126 (159)
Q Consensus 59 ~~~l~~~l~~~~~------~~~~~~~~~~~~~r~~~~~~f~~~~-~~vlv~t~~~~~g~~i~~--~~~vi~~~~~~~--- 126 (159)
++.+...+...+. ....+..+....+...+++.|.+.. -.||+++....+|+|+|+ ++.||..+.|..
T Consensus 4 m~~v~~~~~~~~~~~~l~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~ 83 (141)
T smart00492 4 MESFVQYWKENGILENINKNLLLLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPD 83 (141)
T ss_pred HHHHHHHHHHcCchhhHhcCCeEEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCC
Confidence 4455555554432 2344555556667888999998754 379999977999999986 567777666531
Q ss_pred ----------------------------HHHHHHHHhhccCCCCcceEEEEec
Q psy576 127 ----------------------------AISYIHRIGRAGRGGREGKAVTFFT 151 (159)
Q Consensus 127 ----------------------------~~~~~q~~GR~~R~g~~g~~~~~~~ 151 (159)
.....|.+||+-|..+.--++++.+
T Consensus 84 d~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~l~D 136 (141)
T smart00492 84 SPILKARLELLRDKGQIRPFDFVSLPDAMRTLAQCVGRLIRGANDYGVVVIAD 136 (141)
T ss_pred CHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCccccCcCceEEEEEEe
Confidence 1225788899999875433444443
No 154
>COG4889 Predicted helicase [General function prediction only]
Probab=98.19 E-value=1.1e-06 Score=72.24 Aligned_cols=104 Identities=17% Similarity=0.321 Sum_probs=79.7
Q ss_pred CCEEEEecchHHHHHHHHHHHh-----------C--CC--ceEEEecCCCHHHHHHHHHH---HhcCCeeEEEEeCCccc
Q psy576 47 PPVLVFVQSKERAQELYNELIY-----------D--GI--NVDVIHSDRTQKQRDNVVRS---FRTGRIWILITTELLGR 108 (159)
Q Consensus 47 ~~~lif~~~~~~~~~l~~~l~~-----------~--~~--~~~~~~~~~~~~~r~~~~~~---f~~~~~~vlv~t~~~~~ 108 (159)
++++.||.+.++...+++.+.. . ++ .+..+.|.|+.-+|++.... |...+++||-...++.+
T Consensus 461 ~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSE 540 (1518)
T COG4889 461 QRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSE 540 (1518)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhc
Confidence 3678899988877766554421 1 23 35567788998888555543 34578899999999999
Q ss_pred ccccCCCcEEEEecCCCCHHHHHHHHhhccCCC---CcceEEEEe
Q psy576 109 GIDFRTVRLVVNYDFPSSAISYIHRIGRAGRGG---REGKAVTFF 150 (159)
Q Consensus 109 g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g---~~g~~~~~~ 150 (159)
|+|+|.++.||.+++..+.-+..|.+||+-|-. ..|..+.-+
T Consensus 541 GVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK~yGYIILPI 585 (1518)
T COG4889 541 GVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKKYGYIILPI 585 (1518)
T ss_pred CCCccccceEEEecCchhHHHHHHHHHHHHHhCcCCccceEEEEe
Confidence 999999999999999999999999999999954 335555443
No 155
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=98.12 E-value=8.8e-05 Score=49.19 Aligned_cols=94 Identities=19% Similarity=0.281 Sum_probs=59.9
Q ss_pred HHHHHHHHHHhCCC---ceEEEecCCCHHHHHHHHHHHhcCCe---eEEEEeCC--cccccccCC--CcEEEEecCCCC-
Q psy576 58 RAQELYNELIYDGI---NVDVIHSDRTQKQRDNVVRSFRTGRI---WILITTEL--LGRGIDFRT--VRLVVNYDFPSS- 126 (159)
Q Consensus 58 ~~~~l~~~l~~~~~---~~~~~~~~~~~~~r~~~~~~f~~~~~---~vlv~t~~--~~~g~~i~~--~~~vi~~~~~~~- 126 (159)
.++.+++.+.+.+. ....+..+....+..++++.|++... .||+++.- ..+|+|+|+ ++.||..+.|..
T Consensus 3 ~m~~v~~~~~~~~~~~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~ 82 (142)
T smart00491 3 YLEQVVEYWKENGILEINKPVFIEGKDSGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPN 82 (142)
T ss_pred HHHHHHHHHHhcCccccCceEEEECCCCchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCC
Confidence 34566666665432 22333333344455788899987543 68888766 999999987 567877776631
Q ss_pred ------------------------------HHHHHHHHhhccCCCCcceEEEEec
Q psy576 127 ------------------------------AISYIHRIGRAGRGGREGKAVTFFT 151 (159)
Q Consensus 127 ------------------------------~~~~~q~~GR~~R~g~~g~~~~~~~ 151 (159)
.....|.+||+-|..+.--++++.+
T Consensus 83 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~Qa~GR~iR~~~D~g~i~l~D 137 (142)
T smart00491 83 PDSPILRARLEYLDEKGGIRPFDEVYLFDAMRALAQAIGRAIRHKNDYGVVVLLD 137 (142)
T ss_pred CCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhCccccCccceEEEEEEe
Confidence 1224788999999875433555544
No 156
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=98.02 E-value=8.8e-06 Score=66.96 Aligned_cols=120 Identities=24% Similarity=0.238 Sum_probs=83.6
Q ss_pred CChHHHHHHHHh--cCCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCccc
Q psy576 31 GSPVQAQDETIL--LGIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGR 108 (159)
Q Consensus 31 ~~k~~~l~~~~~--~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~ 108 (159)
+.|+..+.+.+. ...++|+||-+.+.+..+.+.+.|.+.+++..++......++ .-+-+..-..-.|-|||+++++
T Consensus 412 ~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h~~E--A~Iia~AG~~gaVTiATNMAGR 489 (822)
T COG0653 412 EEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNHARE--AEIIAQAGQPGAVTIATNMAGR 489 (822)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccHHHH--HHHHhhcCCCCccccccccccC
Confidence 456666555554 357789999999999999999999999988878877655333 2222333233468999999999
Q ss_pred ccccCCCc-----------EEEEecCCCCHHHHHHHHhhccCCCCcceEEEEecC
Q psy576 109 GIDFRTVR-----------LVVNYDFPSSAISYIHRIGRAGRGGREGKAVTFFTK 152 (159)
Q Consensus 109 g~~i~~~~-----------~vi~~~~~~~~~~~~q~~GR~~R~g~~g~~~~~~~~ 152 (159)
|-||.--. +||--.--.|..-=-|..||+||+|.+|....|.+-
T Consensus 490 GTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~S~F~lSl 544 (822)
T COG0653 490 GTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLSL 544 (822)
T ss_pred CcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcchhhhhhhh
Confidence 99995332 233222223333345999999999988877776653
No 157
>PF13871 Helicase_C_4: Helicase_C-like
Probab=98.01 E-value=3.7e-05 Score=56.20 Aligned_cols=68 Identities=21% Similarity=0.312 Sum_probs=55.2
Q ss_pred HHHHHHHHhcCCeeEEEEeCCcccccccCC--------CcEEEEecCCCCHHHHHHHHhhccCCCCc-ceEEEEecC
Q psy576 85 RDNVVRSFRTGRIWILITTELLGRGIDFRT--------VRLVVNYDFPSSAISYIHRIGRAGRGGRE-GKAVTFFTK 152 (159)
Q Consensus 85 r~~~~~~f~~~~~~vlv~t~~~~~g~~i~~--------~~~vi~~~~~~~~~~~~q~~GR~~R~g~~-g~~~~~~~~ 152 (159)
.....+.|.+|+..|+|.|++++.|+.+.+ ..+-|.+.+||+....+|..||+.|.++. .+.+.++..
T Consensus 50 N~~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t 126 (278)
T PF13871_consen 50 NIAEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVT 126 (278)
T ss_pred cHHHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeec
Confidence 335677899999999999999999997752 34667789999999999999999999964 555665543
No 158
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=97.98 E-value=9.9e-05 Score=62.40 Aligned_cols=91 Identities=22% Similarity=0.221 Sum_probs=67.2
Q ss_pred EEEEecchHHHHHHHHHHHhC------CCceEEEecCCCHHHHHHHHHHH----------------------hc----CC
Q psy576 49 VLVFVQSKERAQELYNELIYD------GINVDVIHSDRTQKQRDNVVRSF----------------------RT----GR 96 (159)
Q Consensus 49 ~lif~~~~~~~~~l~~~l~~~------~~~~~~~~~~~~~~~r~~~~~~f----------------------~~----~~ 96 (159)
.+|-..+++.+-.+++.|... .+...++|+..+...|..+.+.. .+ +.
T Consensus 759 GliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~ 838 (1110)
T TIGR02562 759 GLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNH 838 (1110)
T ss_pred EEEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCC
Confidence 566677777777777776543 23477889999877776666543 12 35
Q ss_pred eeEEEEeCCcccccccCCCcEEEEecCCCCHHHHHHHHhhccCCCC
Q psy576 97 IWILITTELLGRGIDFRTVRLVVNYDFPSSAISYIHRIGRAGRGGR 142 (159)
Q Consensus 97 ~~vlv~t~~~~~g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~ 142 (159)
..|+|+|++.+.|+|+ +.+++|- .|.+..+.+|++||+.|.|.
T Consensus 839 ~~i~v~Tqv~E~g~D~-dfd~~~~--~~~~~~sliQ~aGR~~R~~~ 881 (1110)
T TIGR02562 839 LFIVLATPVEEVGRDH-DYDWAIA--DPSSMRSIIQLAGRVNRHRL 881 (1110)
T ss_pred CeEEEEeeeEEEEecc-cCCeeee--ccCcHHHHHHHhhccccccc
Confidence 6799999999999998 4555554 35679999999999999873
No 159
>KOG1016|consensus
Probab=97.79 E-value=9.7e-05 Score=60.56 Aligned_cols=106 Identities=15% Similarity=0.209 Sum_probs=87.7
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhCCCc------------------eEEEecCCCHHHHHHHHHHHhcC-Ce--eEEEEe
Q psy576 45 IEPPVLVFVQSKERAQELYNELIYDGIN------------------VDVIHSDRTQKQRDNVVRSFRTG-RI--WILITT 103 (159)
Q Consensus 45 ~~~~~lif~~~~~~~~~l~~~l~~~~~~------------------~~~~~~~~~~~~r~~~~~~f~~~-~~--~vlv~t 103 (159)
.+.++|||.......+.|.+.|.++.++ -.-+.|..+..+|++.+.+|+.. .+ -++++|
T Consensus 718 ~g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllst 797 (1387)
T KOG1016|consen 718 IGEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLST 797 (1387)
T ss_pred cCceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehh
Confidence 3468999999999999988888765221 23567778889999999999872 22 477789
Q ss_pred CCcccccccCCCcEEEEecCCCCHHHHHHHHhhccCCCCcceEEEEe
Q psy576 104 ELLGRGIDFRTVRLVVNYDFPSSAISYIHRIGRAGRGGREGKAVTFF 150 (159)
Q Consensus 104 ~~~~~g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g~~g~~~~~~ 150 (159)
.....|+|+-..+-++.++..|++-.-.|.+.|+.|.|+..+|++|-
T Consensus 798 rag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYR 844 (1387)
T KOG1016|consen 798 RAGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYR 844 (1387)
T ss_pred ccccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEe
Confidence 99999999999998999999999988899999999999999998874
No 160
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=97.45 E-value=0.003 Score=52.42 Aligned_cols=103 Identities=17% Similarity=0.177 Sum_probs=73.9
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCcccccccCC--CcEEEEec
Q psy576 45 IEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGRGIDFRT--VRLVVNYD 122 (159)
Q Consensus 45 ~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~g~~i~~--~~~vi~~~ 122 (159)
.++++-||+.|.+.++.+.+.......++..++|.-+.. ++ +. =++.+|+|-|+++..|+++.. .+-++-|=
T Consensus 281 ~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~---dv-~~--W~~~~VviYT~~itvG~Sf~~~HF~~~f~yv 354 (824)
T PF02399_consen 281 AGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLE---DV-ES--WKKYDVVIYTPVITVGLSFEEKHFDSMFAYV 354 (824)
T ss_pred CCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcc---cc-cc--ccceeEEEEeceEEEEeccchhhceEEEEEe
Confidence 455677899999999999998877777888888865443 22 11 257889999999999999864 34444331
Q ss_pred CC----CCHHHHHHHHhhccCCCCcceEEEEecCCC
Q psy576 123 FP----SSAISYIHRIGRAGRGGREGKAVTFFTKQD 154 (159)
Q Consensus 123 ~~----~~~~~~~q~~GR~~R~g~~g~~~~~~~~~~ 154 (159)
-| .+..+..|++||+-.. ..+..+++++...
T Consensus 355 k~~~~gpd~~s~~Q~lgRvR~l-~~~ei~v~~d~~~ 389 (824)
T PF02399_consen 355 KPMSYGPDMVSVYQMLGRVRSL-LDNEIYVYIDASG 389 (824)
T ss_pred cCCCCCCcHHHHHHHHHHHHhh-ccCeEEEEEeccc
Confidence 12 3566789999999544 5677888877653
No 161
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=97.44 E-value=0.00091 Score=55.98 Aligned_cols=39 Identities=10% Similarity=0.069 Sum_probs=29.6
Q ss_pred CCChHHHHHHHHhc-----------CCCCCEEEEecchHHHHHHHHHHHh
Q psy576 30 AGSPVQAQDETILL-----------GIEPPVLVFVQSKERAQELYNELIY 68 (159)
Q Consensus 30 ~~~k~~~l~~~~~~-----------~~~~~~lif~~~~~~~~~l~~~l~~ 68 (159)
+.=|...|.+++.. ...+++||||....+|..+.++|..
T Consensus 268 e~PKw~~L~eiL~eI~~~~~~~~~~~~~~~iLI~~~d~~T~~qL~~~L~~ 317 (814)
T TIGR00596 268 ENPKWEVLTDVLKEISHEMRMTNRLQGPGKVLIMCSDNRTCLQLRDYLTT 317 (814)
T ss_pred cCCCHHHHHHHHHHHHhHHhhhcccCCCCcEEEEEcchHHHHHHHHHHHh
Confidence 35677777777642 2346799999999999999998855
No 162
>PRK05580 primosome assembly protein PriA; Validated
Probab=97.38 E-value=0.0038 Score=51.63 Aligned_cols=92 Identities=16% Similarity=0.191 Sum_probs=70.5
Q ss_pred CCCCChHHHHHHHHhc--CCCCCEEEEecchHHHHHHHHHHHhC-CCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeC
Q psy576 28 EGAGSPVQAQDETILL--GIEPPVLVFVQSKERAQELYNELIYD-GINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTE 104 (159)
Q Consensus 28 ~~~~~k~~~l~~~~~~--~~~~~~lif~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~ 104 (159)
....+|.+.....+.. ..+.++||.+++.+.+..+.+.+++. +..+..+||+++..++.+.+.....|+.+|+|+|.
T Consensus 170 ~TGSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTr 249 (679)
T PRK05580 170 VTGSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGAR 249 (679)
T ss_pred CCCChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEecc
Confidence 3346787776554431 23568999999999999999998764 67899999999999999999999999999999997
Q ss_pred CcccccccCCCcEEEE
Q psy576 105 LLGRGIDFRTVRLVVN 120 (159)
Q Consensus 105 ~~~~g~~i~~~~~vi~ 120 (159)
.... ..+.++..||.
T Consensus 250 sal~-~p~~~l~liVv 264 (679)
T PRK05580 250 SALF-LPFKNLGLIIV 264 (679)
T ss_pred HHhc-ccccCCCEEEE
Confidence 4332 34456666654
No 163
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.33 E-value=0.0028 Score=50.62 Aligned_cols=89 Identities=20% Similarity=0.323 Sum_probs=69.4
Q ss_pred CChHHHHHHHHhc--CCCCCEEEEecchHHHHHHHHHHHhC-CCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCcc
Q psy576 31 GSPVQAQDETILL--GIEPPVLVFVQSKERAQELYNELIYD-GINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLG 107 (159)
Q Consensus 31 ~~k~~~l~~~~~~--~~~~~~lif~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~ 107 (159)
.+|.+....++.. ..++++++.+++..-+..+++.|++. +..+..+||+++..+|.+.+....+|+..|+|+|..+.
T Consensus 8 sGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsal 87 (505)
T TIGR00595 8 SGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSAL 87 (505)
T ss_pred CCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHH
Confidence 5777776555532 24567999999999999999999765 66789999999999999999999999999999997543
Q ss_pred cccccCCCcEEEE
Q psy576 108 RGIDFRTVRLVVN 120 (159)
Q Consensus 108 ~g~~i~~~~~vi~ 120 (159)
. ..++++..||.
T Consensus 88 f-~p~~~l~lIIV 99 (505)
T TIGR00595 88 F-LPFKNLGLIIV 99 (505)
T ss_pred c-CcccCCCEEEE
Confidence 2 34456666664
No 164
>PRK14873 primosome assembly protein PriA; Provisional
Probab=97.26 E-value=0.0024 Score=52.49 Aligned_cols=76 Identities=14% Similarity=0.067 Sum_probs=66.0
Q ss_pred CChHHHHHHHHhc--CCCCCEEEEecchHHHHHHHHHHHhC-C-CceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCc
Q psy576 31 GSPVQAQDETILL--GIEPPVLVFVQSKERAQELYNELIYD-G-INVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELL 106 (159)
Q Consensus 31 ~~k~~~l~~~~~~--~~~~~~lif~~~~~~~~~l~~~l~~~-~-~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~ 106 (159)
.+|.+...+++.. ..++++||.++.......+.+.|++. + ..+..+|+++++.+|.+.+....+|+.+|+|.|..+
T Consensus 171 SGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSA 250 (665)
T PRK14873 171 EDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSA 250 (665)
T ss_pred CcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEccee
Confidence 5888888888863 24668999999999999999999765 3 678999999999999999999999999999999654
No 165
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=97.23 E-value=0.0059 Score=50.55 Aligned_cols=99 Identities=15% Similarity=0.250 Sum_probs=73.3
Q ss_pred eeeeecCCCCChHHHHH-HHHh-cCCCCCEEEEecchHHHHHHHHHHHh----CCCceEEEecCCCHHHHHHHHHHHhcC
Q psy576 22 RMYRETEGAGSPVQAQD-ETIL-LGIEPPVLVFVQSKERAQELYNELIY----DGINVDVIHSDRTQKQRDNVVRSFRTG 95 (159)
Q Consensus 22 ~~~~~~~~~~~k~~~l~-~~~~-~~~~~~~lif~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~ 95 (159)
......+...+|..... .++. ...+.++++.++|..-+...++.+++ .++++..+||+++..++.+.++.+.+|
T Consensus 284 ~~Ll~~~TGSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g 363 (681)
T PRK10917 284 NRLLQGDVGSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASG 363 (681)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCC
Confidence 34444455567766532 2222 22456899999999999888777654 368899999999999999999999999
Q ss_pred CeeEEEEeCC-cccccccCCCcEEEE
Q psy576 96 RIWILITTEL-LGRGIDFRTVRLVVN 120 (159)
Q Consensus 96 ~~~vlv~t~~-~~~g~~i~~~~~vi~ 120 (159)
+..|+|+|.. +...+.++.+.+||.
T Consensus 364 ~~~IvVgT~~ll~~~v~~~~l~lvVI 389 (681)
T PRK10917 364 EADIVIGTHALIQDDVEFHNLGLVII 389 (681)
T ss_pred CCCEEEchHHHhcccchhcccceEEE
Confidence 9999999964 444566777777664
No 166
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=97.14 E-value=0.0016 Score=53.72 Aligned_cols=77 Identities=25% Similarity=0.261 Sum_probs=67.2
Q ss_pred CCChHHHHHHHHhc--CCCCCEEEEecchHHHHHHHHHHHhC-CCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCc
Q psy576 30 AGSPVQAQDETILL--GIEPPVLVFVQSKERAQELYNELIYD-GINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELL 106 (159)
Q Consensus 30 ~~~k~~~l~~~~~~--~~~~~~lif~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~ 106 (159)
..+|.++..+++.. ..++++|+.++.......+.+.++.. +.++..+|+++++.+|.+.+.+..+|+.+|+|.|..+
T Consensus 227 GSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSA 306 (730)
T COG1198 227 GSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSA 306 (730)
T ss_pred CCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEEEechh
Confidence 37999998888873 35678999999999888888888765 7889999999999999999999999999999999654
No 167
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=96.88 E-value=0.016 Score=47.56 Aligned_cols=97 Identities=18% Similarity=0.314 Sum_probs=71.4
Q ss_pred eeecCCCCChHHHHH-HHHh-cCCCCCEEEEecchHHHHHHHHHHHhC----CCceEEEecCCCHHHHHHHHHHHhcCCe
Q psy576 24 YRETEGAGSPVQAQD-ETIL-LGIEPPVLVFVQSKERAQELYNELIYD----GINVDVIHSDRTQKQRDNVVRSFRTGRI 97 (159)
Q Consensus 24 ~~~~~~~~~k~~~l~-~~~~-~~~~~~~lif~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~ 97 (159)
....+...+|..... .++. ...+.++++.++|..-+..+++.+++. ++++..+||+++..++...++...+|+.
T Consensus 260 Ll~g~TGSGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~ 339 (630)
T TIGR00643 260 LLQGDVGSGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQI 339 (630)
T ss_pred EEECCCCCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCC
Confidence 444444567766532 2222 224568999999999999887766543 6889999999999999999999999999
Q ss_pred eEEEEeCCc-ccccccCCCcEEEE
Q psy576 98 WILITTELL-GRGIDFRTVRLVVN 120 (159)
Q Consensus 98 ~vlv~t~~~-~~g~~i~~~~~vi~ 120 (159)
.|+|+|... ...+.+.++.+||.
T Consensus 340 ~IiVgT~~ll~~~~~~~~l~lvVI 363 (630)
T TIGR00643 340 HLVVGTHALIQEKVEFKRLALVII 363 (630)
T ss_pred CEEEecHHHHhccccccccceEEE
Confidence 999999653 33456667776664
No 168
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=96.86 E-value=0.007 Score=51.36 Aligned_cols=73 Identities=23% Similarity=0.284 Sum_probs=58.3
Q ss_pred hHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHhC----C-CceEE-EecCCCHHHHHHHHHHHhcCCeeEEEEeCC
Q psy576 33 PVQAQDETILLGIEPPVLVFVQSKERAQELYNELIYD----G-INVDV-IHSDRTQKQRDNVVRSFRTGRIWILITTEL 105 (159)
Q Consensus 33 k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~----~-~~~~~-~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~ 105 (159)
.+..+..+....+++++++.++|..-+...++.|.+. + ..+.. +|+.++.+++++.+++|.+|+.+|||+|..
T Consensus 112 Tfg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~ 190 (1187)
T COG1110 112 TFGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQ 190 (1187)
T ss_pred HHHHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHH
Confidence 3444455555556788999999999999888888654 2 44444 899999999999999999999999999864
No 169
>KOG1001|consensus
Probab=96.81 E-value=0.00018 Score=58.92 Aligned_cols=102 Identities=17% Similarity=0.153 Sum_probs=88.6
Q ss_pred CCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCC-ee-EEEEeCCcccccccCCCcEEEEecCC
Q psy576 47 PPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGR-IW-ILITTELLGRGIDFRTVRLVVNYDFP 124 (159)
Q Consensus 47 ~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~-~~-vlv~t~~~~~g~~i~~~~~vi~~~~~ 124 (159)
.+++||+.-..-++-+...+...++....+.|.|+...|.+.+..|..+. .. .+++..+.+-|+|+-.+++|+..++=
T Consensus 540 ~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~ 619 (674)
T KOG1001|consen 540 PKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPW 619 (674)
T ss_pred CceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchh
Confidence 48999999888888888877777888889999999999999999998643 33 44567899999999999999999999
Q ss_pred CCHHHHHHHHhhccCCCCcceEEE
Q psy576 125 SSAISYIHRIGRAGRGGREGKAVT 148 (159)
Q Consensus 125 ~~~~~~~q~~GR~~R~g~~g~~~~ 148 (159)
|++....|.+-|+.|.|+..++.+
T Consensus 620 wnp~~eeQaidR~hrigq~k~v~v 643 (674)
T KOG1001|consen 620 WNPAVEEQAIDRAHRIGQTKPVKV 643 (674)
T ss_pred cChHHHHHHHHHHHHhcccceeee
Confidence 999999999999999998777665
No 170
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=96.80 E-value=0.019 Score=49.06 Aligned_cols=98 Identities=16% Similarity=0.246 Sum_probs=72.5
Q ss_pred eeeecCCCCChHHHHHH-HHh-cCCCCCEEEEecchHHHHHHHHHHHhC----CCceEEEecCCCHHHHHHHHHHHhcCC
Q psy576 23 MYRETEGAGSPVQAQDE-TIL-LGIEPPVLVFVQSKERAQELYNELIYD----GINVDVIHSDRTQKQRDNVVRSFRTGR 96 (159)
Q Consensus 23 ~~~~~~~~~~k~~~l~~-~~~-~~~~~~~lif~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~ 96 (159)
.....+...+|...... ++. ...+.+++|.++|..-|...++.+++. ++++..++|..+..++.++++.+.+|+
T Consensus 475 ~Ll~adTGsGKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~ 554 (926)
T TIGR00580 475 RLVCGDVGFGKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGK 554 (926)
T ss_pred EEEECCCCccHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCC
Confidence 34444555677765332 222 124578999999999999998877653 567888999999999999999999999
Q ss_pred eeEEEEeCC-cccccccCCCcEEEE
Q psy576 97 IWILITTEL-LGRGIDFRTVRLVVN 120 (159)
Q Consensus 97 ~~vlv~t~~-~~~g~~i~~~~~vi~ 120 (159)
.+|+|+|.. +...+.+.++.++|.
T Consensus 555 ~dIVIGTp~ll~~~v~f~~L~llVI 579 (926)
T TIGR00580 555 IDILIGTHKLLQKDVKFKDLGLLII 579 (926)
T ss_pred ceEEEchHHHhhCCCCcccCCEEEe
Confidence 999999963 444566777776664
No 171
>KOG0951|consensus
Probab=96.70 E-value=0.011 Score=51.23 Aligned_cols=111 Identities=20% Similarity=0.330 Sum_probs=79.3
Q ss_pred CCCCCEEEEecchHHHHHHHHHHH----------------h------CCCceEEEecCCCHHHHHHHHHHHhcCCeeEEE
Q psy576 44 GIEPPVLVFVQSKERAQELYNELI----------------Y------DGINVDVIHSDRTQKQRDNVVRSFRTGRIWILI 101 (159)
Q Consensus 44 ~~~~~~lif~~~~~~~~~l~~~l~----------------~------~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv 101 (159)
..+++.+||+++++++..++--+- . ...+.++-|.+++..+..-+-..|..|.+.|+|
T Consensus 1357 ~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v 1436 (1674)
T KOG0951|consen 1357 GNRKPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCV 1436 (1674)
T ss_pred cCCCCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEE
Confidence 467889999999998886533221 0 123344448899998888888889999999999
Q ss_pred EeCCcccccccCCCcEEEE----ec------CCCCHHHHHHHHhhccCCCCcceEEEEecCCCcccc
Q psy576 102 TTELLGRGIDFRTVRLVVN----YD------FPSSAISYIHRIGRAGRGGREGKAVTFFTKQDAPLL 158 (159)
Q Consensus 102 ~t~~~~~g~~i~~~~~vi~----~~------~~~~~~~~~q~~GR~~R~g~~g~~~~~~~~~~~~~~ 158 (159)
.+.- ..|+....--+|+. || .+.+.++.+||+|++.|. |.|+++.+..+...|
T Consensus 1437 ~s~~-~~~~~~~~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~~---~k~vi~~~~~~k~yy 1499 (1674)
T KOG0951|consen 1437 MSRD-CYGTKLKAHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASGA---GKCVIMCHTPKKEYY 1499 (1674)
T ss_pred EEcc-cccccccceEEEEecceeecccccccccCchhHHHHHhhhhcCC---ccEEEEecCchHHHH
Confidence 7755 66666543333331 22 345799999999999984 789999888776544
No 172
>KOG2340|consensus
Probab=96.70 E-value=0.012 Score=46.77 Aligned_cols=109 Identities=21% Similarity=0.236 Sum_probs=85.1
Q ss_pred CCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCC--cccccccCCCcEEEEecC
Q psy576 46 EPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTEL--LGRGIDFRTVRLVVNYDF 123 (159)
Q Consensus 46 ~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~--~~~g~~i~~~~~vi~~~~ 123 (159)
...+||+.++--.--++..++++..+....+++..+...-....+.|..|...+|+-|.= .-+-.+|..+..||.|.+
T Consensus 552 ~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~hffrR~~ikGVk~vVfYqp 631 (698)
T KOG2340|consen 552 ESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERAHFFRRYHIKGVKNVVFYQP 631 (698)
T ss_pred cCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhhhhhhhheecceeeEEEecC
Confidence 345899999999999999999998888888888878888888899999999999999964 456778899999999999
Q ss_pred CCCHHHHHHH---HhhccCCC----CcceEEEEecCCC
Q psy576 124 PSSAISYIHR---IGRAGRGG----REGKAVTFFTKQD 154 (159)
Q Consensus 124 ~~~~~~~~q~---~GR~~R~g----~~g~~~~~~~~~~ 154 (159)
|..+.=|.-. .+|..-.| ..-.|.+++.+-|
T Consensus 632 P~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD 669 (698)
T KOG2340|consen 632 PNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYD 669 (698)
T ss_pred CCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechh
Confidence 9887666554 44443333 2245666666544
No 173
>PRK14873 primosome assembly protein PriA; Provisional
Probab=96.57 E-value=0.014 Score=48.21 Aligned_cols=61 Identities=10% Similarity=0.086 Sum_probs=43.7
Q ss_pred HHHHHHhcCCeeEEEEeC----CcccccccCCCcEEEEecC------CC------CHHHHHHHHhhccCCCCcceEEEEe
Q psy576 87 NVVRSFRTGRIWILITTE----LLGRGIDFRTVRLVVNYDF------PS------SAISYIHRIGRAGRGGREGKAVTFF 150 (159)
Q Consensus 87 ~~~~~f~~~~~~vlv~t~----~~~~g~~i~~~~~vi~~~~------~~------~~~~~~q~~GR~~R~g~~g~~~~~~ 150 (159)
.+++.|. ++.+|||+|+ ++. ++++.|..+|. |+ ....+.|-.||+||.+..|.+++..
T Consensus 463 ~~l~~~~-~~~~IlVGTqgaepm~~-----g~~~lV~ildaD~~L~~pDfRA~Er~~qll~qvagragr~~~~G~V~iq~ 536 (665)
T PRK14873 463 QVVDTVD-AGPALVVATPGAEPRVE-----GGYGAALLLDAWALLGRQDLRAAEDTLRRWMAAAALVRPRADGGQVVVVA 536 (665)
T ss_pred HHHHhhc-cCCCEEEECCCCccccc-----CCceEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhhcCCCCCCEEEEEe
Confidence 4788886 5999999999 555 35566655442 21 2455678899999998889999885
Q ss_pred cCCC
Q psy576 151 TKQD 154 (159)
Q Consensus 151 ~~~~ 154 (159)
..+
T Consensus 537 -~p~ 539 (665)
T PRK14873 537 -ESS 539 (665)
T ss_pred -CCC
Confidence 444
No 174
>KOG0921|consensus
Probab=96.37 E-value=0.0044 Score=51.97 Aligned_cols=106 Identities=25% Similarity=0.344 Sum_probs=84.1
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhC-------CCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCcccccccCCCcE
Q psy576 45 IEPPVLVFVQSKERAQELYNELIYD-------GINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGRGIDFRTVRL 117 (159)
Q Consensus 45 ~~~~~lif~~~~~~~~~l~~~l~~~-------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~g~~i~~~~~ 117 (159)
-.+-+++|.+.......+..++... ...+...|+.....+..++.+....|..+++++|..++..+.+.++..
T Consensus 642 i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~ 721 (1282)
T KOG0921|consen 642 IDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVY 721 (1282)
T ss_pred CccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhccCcccccccccccccceeeEeeeecceeE
Confidence 3456999999999999988887543 346889999999999999999999999999999999999998888666
Q ss_pred EEEecCC------------------CCHHHHHHHHhhccCCCCcceEEEEec
Q psy576 118 VVNYDFP------------------SSAISYIHRIGRAGRGGREGKAVTFFT 151 (159)
Q Consensus 118 vi~~~~~------------------~~~~~~~q~~GR~~R~g~~g~~~~~~~ 151 (159)
|+..+.- .+..+..|+.||+||. ++|.|..+.+
T Consensus 722 vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv-R~G~~f~lcs 772 (1282)
T KOG0921|consen 722 VIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV-RPGFCFHLCS 772 (1282)
T ss_pred EEeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee-cccccccccH
Confidence 6532211 1455678999999997 6777777654
No 175
>PRK10689 transcription-repair coupling factor; Provisional
Probab=96.33 E-value=0.036 Score=48.52 Aligned_cols=98 Identities=16% Similarity=0.230 Sum_probs=70.6
Q ss_pred eeeecCCCCChHHHHHHH--HhcCCCCCEEEEecchHHHHHHHHHHHhC----CCceEEEecCCCHHHHHHHHHHHhcCC
Q psy576 23 MYRETEGAGSPVQAQDET--ILLGIEPPVLVFVQSKERAQELYNELIYD----GINVDVIHSDRTQKQRDNVVRSFRTGR 96 (159)
Q Consensus 23 ~~~~~~~~~~k~~~l~~~--~~~~~~~~~lif~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~ 96 (159)
.....+...+|....... .....+.+++|.++|..-+..+++.+.+. ++++..++|..+..++..+++.+.+|.
T Consensus 624 ~Ll~a~TGsGKT~val~aa~~~~~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~ 703 (1147)
T PRK10689 624 RLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGK 703 (1147)
T ss_pred EEEEcCCCcCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCC
Confidence 344444457777642211 11224678999999999999998888653 457788999999999999999999999
Q ss_pred eeEEEEeCC-cccccccCCCcEEEE
Q psy576 97 IWILITTEL-LGRGIDFRTVRLVVN 120 (159)
Q Consensus 97 ~~vlv~t~~-~~~g~~i~~~~~vi~ 120 (159)
.+|+|+|.. +...+.+.++.++|.
T Consensus 704 ~dIVVgTp~lL~~~v~~~~L~lLVI 728 (1147)
T PRK10689 704 IDILIGTHKLLQSDVKWKDLGLLIV 728 (1147)
T ss_pred CCEEEECHHHHhCCCCHhhCCEEEE
Confidence 999999964 333455566666653
No 176
>PRK14701 reverse gyrase; Provisional
Probab=96.27 E-value=0.057 Score=48.90 Aligned_cols=82 Identities=11% Similarity=0.083 Sum_probs=61.5
Q ss_pred eeecCCCCChHHHHH--HHHhcCCCCCEEEEecchHHHHHHHHHHHhC------CCceEEEecCCCHHHHHHHHHHHhcC
Q psy576 24 YRETEGAGSPVQAQD--ETILLGIEPPVLVFVQSKERAQELYNELIYD------GINVDVIHSDRTQKQRDNVVRSFRTG 95 (159)
Q Consensus 24 ~~~~~~~~~k~~~l~--~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~------~~~~~~~~~~~~~~~r~~~~~~f~~~ 95 (159)
........+|..... .+.....+.+++|.++|++-+..+.+.++.. +..+..+||+++..++.+.++.+.+|
T Consensus 98 li~APTGsGKTl~~~~~al~~~~~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g 177 (1638)
T PRK14701 98 SIVAPTGMGKSTFGAFIALFLALKGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENG 177 (1638)
T ss_pred EEEEcCCCCHHHHHHHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcC
Confidence 344444467776322 2222224557999999999999988888652 45678899999999999999999999
Q ss_pred CeeEEEEeCC
Q psy576 96 RIWILITTEL 105 (159)
Q Consensus 96 ~~~vlv~t~~ 105 (159)
+.+|||+|+-
T Consensus 178 ~~dILV~TPg 187 (1638)
T PRK14701 178 DFDILVTTAQ 187 (1638)
T ss_pred CCCEEEECCc
Confidence 9999999974
No 177
>KOG0298|consensus
Probab=96.00 E-value=0.014 Score=50.51 Aligned_cols=100 Identities=16% Similarity=0.139 Sum_probs=73.1
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCee-EEEEeCCcccccccCCCcEEEEecC
Q psy576 45 IEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIW-ILITTELLGRGIDFRTVRLVVNYDF 123 (159)
Q Consensus 45 ~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~-vlv~t~~~~~g~~i~~~~~vi~~~~ 123 (159)
...++|+|+.-....+.+...+...++....--+ -++..+.+..|+. ++ .++-+...+.|+|+-.+.+|+..++
T Consensus 1220 ~qekvIvfsqws~~ldV~e~~~~~N~I~~~~~~~---t~d~~dc~~~fk~--I~clll~~~~~~~GLNL~eA~Hvfl~eP 1294 (1394)
T KOG0298|consen 1220 EQEKVIVFSQWSVVLDVKELRYLMNLIKKQLDGE---TEDFDDCIICFKS--IDCLLLFVSKGSKGLNLIEATHVFLVEP 1294 (1394)
T ss_pred cCceEEEEEehHHHHHHHHHHHHhhhhHhhhccC---Ccchhhhhhhccc--ceEEEEEeccCcccccHHhhhhhheecc
Confidence 4457888888777777777777666544322222 2234445666665 43 5557788899999999999999999
Q ss_pred CCCHHHHHHHHhhccCCCCcceEEEE
Q psy576 124 PSSAISYIHRIGRAGRGGREGKAVTF 149 (159)
Q Consensus 124 ~~~~~~~~q~~GR~~R~g~~g~~~~~ 149 (159)
--++..-.|.+||+.|.|+.-+..+.
T Consensus 1295 iLN~~~E~QAigRvhRiGQ~~pT~V~ 1320 (1394)
T KOG0298|consen 1295 ILNPGDEAQAIGRVHRIGQKRPTFVH 1320 (1394)
T ss_pred ccCchHHHhhhhhhhhcccccchhhh
Confidence 99999999999999999977665543
No 178
>KOG1133|consensus
Probab=95.90 E-value=0.37 Score=39.86 Aligned_cols=105 Identities=24% Similarity=0.319 Sum_probs=68.9
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhCCC-------ceEEEecCCCHHHHHHHHHHHhc----CCeeEEEEe--CCcccccc
Q psy576 45 IEPPVLVFVQSKERAQELYNELIYDGI-------NVDVIHSDRTQKQRDNVVRSFRT----GRIWILITT--ELLGRGID 111 (159)
Q Consensus 45 ~~~~~lif~~~~~~~~~l~~~l~~~~~-------~~~~~~~~~~~~~r~~~~~~f~~----~~~~vlv~t--~~~~~g~~ 111 (159)
-++-+++|++|.+-...+.+.+.+.|+ +..+.-..-+ -+.+++.|.. |.-.+|.+. ..+++|+|
T Consensus 628 VPgGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEGIN 704 (821)
T KOG1133|consen 628 VPGGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRGAILLAVVGGKLSEGIN 704 (821)
T ss_pred CCCcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCCCeEEEEEeccccccccc
Confidence 347799999999999999998876543 2233332222 3455666543 444566554 78999999
Q ss_pred cCC--CcEEEEecCCCC--------------------------------HHHHHHHHhhccCCCCcceEEEEecC
Q psy576 112 FRT--VRLVVNYDFPSS--------------------------------AISYIHRIGRAGRGGREGKAVTFFTK 152 (159)
Q Consensus 112 i~~--~~~vi~~~~~~~--------------------------------~~~~~q~~GR~~R~g~~g~~~~~~~~ 152 (159)
+.+ ++.|+..+.|.+ ...--|.+||+-|..+.=.++++.+.
T Consensus 705 F~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRAIRH~~DYA~i~LlD~ 779 (821)
T KOG1133|consen 705 FSDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRAIRHRKDYASIYLLDK 779 (821)
T ss_pred cccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhccceeEEEehh
Confidence 975 677888777753 01135888999998655555665553
No 179
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=95.72 E-value=0.13 Score=42.22 Aligned_cols=77 Identities=21% Similarity=0.280 Sum_probs=61.8
Q ss_pred CCCCCEEEEecchHHHH----HHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCc-ccccccCCCcEE
Q psy576 44 GIEPPVLVFVQSKERAQ----ELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELL-GRGIDFRTVRLV 118 (159)
Q Consensus 44 ~~~~~~lif~~~~~~~~----~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~-~~g~~i~~~~~v 118 (159)
..+.++....+|.=-|+ .+.++|...++.+..++|.+...+|.++++...+|+.+++|.|.++ -..+++.++-.|
T Consensus 309 ~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V~F~~LgLV 388 (677)
T COG1200 309 EAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDKVEFHNLGLV 388 (677)
T ss_pred HcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcceeecceeEE
Confidence 35678999999875444 5556666668999999999999999999999999999999999765 446777666655
Q ss_pred EE
Q psy576 119 VN 120 (159)
Q Consensus 119 i~ 120 (159)
|.
T Consensus 389 Ii 390 (677)
T COG1200 389 II 390 (677)
T ss_pred EE
Confidence 54
No 180
>KOG0701|consensus
Probab=95.72 E-value=0.011 Score=52.60 Aligned_cols=93 Identities=26% Similarity=0.365 Sum_probs=76.4
Q ss_pred CEEEEecchHHHHHHHHHHHhC-CCceEEEecCCC-----------HHHHHHHHHHHhcCCeeEEEEeCCcccccccCCC
Q psy576 48 PVLVFVQSKERAQELYNELIYD-GINVDVIHSDRT-----------QKQRDNVVRSFRTGRIWILITTELLGRGIDFRTV 115 (159)
Q Consensus 48 ~~lif~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~-----------~~~r~~~~~~f~~~~~~vlv~t~~~~~g~~i~~~ 115 (159)
..++|++....+....+.++.. ...+..+.|.+. ...+.+++..|...++.+|+.|.++.+|+|++.+
T Consensus 294 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~ 373 (1606)
T KOG0701|consen 294 SGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPKC 373 (1606)
T ss_pred hheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhhh
Confidence 4678999999998888887665 334555666542 2235667888888999999999999999999999
Q ss_pred cEEEEecCCCCHHHHHHHHhhccCC
Q psy576 116 RLVVNYDFPSSAISYIHRIGRAGRG 140 (159)
Q Consensus 116 ~~vi~~~~~~~~~~~~q~~GR~~R~ 140 (159)
+.++.++.|....+|.|..||+-+.
T Consensus 374 ~~~~~~~~~~~~~~~vq~~~r~~~~ 398 (1606)
T KOG0701|consen 374 NLVVLFDAPTYYRSYVQKKGRARAA 398 (1606)
T ss_pred hhheeccCcchHHHHHHhhcccccc
Confidence 9999999999999999999999654
No 181
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=95.26 E-value=0.2 Score=44.19 Aligned_cols=82 Identities=13% Similarity=0.118 Sum_probs=59.2
Q ss_pred eeecCCCCChHHHHHHHHh--cCCCCCEEEEecchHHHHHHHHHHHhC----CCc---eEEEecCCCHHHHHHHHHHHhc
Q psy576 24 YRETEGAGSPVQAQDETIL--LGIEPPVLVFVQSKERAQELYNELIYD----GIN---VDVIHSDRTQKQRDNVVRSFRT 94 (159)
Q Consensus 24 ~~~~~~~~~k~~~l~~~~~--~~~~~~~lif~~~~~~~~~l~~~l~~~----~~~---~~~~~~~~~~~~r~~~~~~f~~ 94 (159)
........+|.....-+.. ...+.+++|.++|++-+..+++.+... ++. +..+||+++..++.+.++.+.+
T Consensus 97 vi~ApTGsGKT~f~l~~~~~l~~~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~ 176 (1171)
T TIGR01054 97 AIIAPTGVGKTTFGLAMSLFLAKKGKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIEN 176 (1171)
T ss_pred EEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhc
Confidence 3334444677764332221 224567999999999999988877653 333 3358999999999999999999
Q ss_pred CCeeEEEEeCC
Q psy576 95 GRIWILITTEL 105 (159)
Q Consensus 95 ~~~~vlv~t~~ 105 (159)
+..+|+|+|+.
T Consensus 177 ~~~dIlV~Tp~ 187 (1171)
T TIGR01054 177 GDFDILITTTM 187 (1171)
T ss_pred CCCCEEEECHH
Confidence 99999999974
No 182
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=95.18 E-value=0.15 Score=44.25 Aligned_cols=89 Identities=19% Similarity=0.343 Sum_probs=68.8
Q ss_pred CChHHHH-HHHHh-cCCCCCEEEEecchHHHHHHHHHHHhC----CCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEe-
Q psy576 31 GSPVQAQ-DETIL-LGIEPPVLVFVQSKERAQELYNELIYD----GINVDVIHSDRTQKQRDNVVRSFRTGRIWILITT- 103 (159)
Q Consensus 31 ~~k~~~l-~~~~~-~~~~~~~lif~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t- 103 (159)
-+|.++- +.... -+.++++.|.++|+=-|+.-++.++++ ++++..+..=.+.++...+++..++|+.+|+|.|
T Consensus 626 FGKTEVAmRAAFkAV~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTH 705 (1139)
T COG1197 626 FGKTEVAMRAAFKAVMDGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTH 705 (1139)
T ss_pred CcHHHHHHHHHHHHhcCCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEech
Confidence 3566653 33333 245678999999998888888888765 5567777777789999999999999999999999
Q ss_pred CCcccccccCCCcEEE
Q psy576 104 ELLGRGIDFRTVRLVV 119 (159)
Q Consensus 104 ~~~~~g~~i~~~~~vi 119 (159)
..+..++.+.++-.+|
T Consensus 706 rLL~kdv~FkdLGLlI 721 (1139)
T COG1197 706 RLLSKDVKFKDLGLLI 721 (1139)
T ss_pred HhhCCCcEEecCCeEE
Confidence 5677778888777665
No 183
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.91 E-value=0.52 Score=37.46 Aligned_cols=82 Identities=18% Similarity=0.231 Sum_probs=64.8
Q ss_pred eeeeecCCCCChHHH-HHHHHhcCCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCeeEE
Q psy576 22 RMYRETEGAGSPVQA-QDETILLGIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWIL 100 (159)
Q Consensus 22 ~~~~~~~~~~~k~~~-l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vl 100 (159)
..+...+...+|-.. +...+. ..+.+||.+++++-+......|...++++..++++.+..++..++..+..++.+++
T Consensus 28 dvlv~apTGsGKTl~y~lp~l~--~~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il 105 (470)
T TIGR00614 28 DCFVVMPTGGGKSLCYQLPALC--SDGITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKNVLTDLKDGKIKLL 105 (470)
T ss_pred CEEEEcCCCCcHhHHHHHHHHH--cCCcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEE
Confidence 455556666677653 233332 35679999999999988888888889999999999999999999999999999999
Q ss_pred EEeCC
Q psy576 101 ITTEL 105 (159)
Q Consensus 101 v~t~~ 105 (159)
++|+-
T Consensus 106 ~~TPe 110 (470)
T TIGR00614 106 YVTPE 110 (470)
T ss_pred EECHH
Confidence 99863
No 184
>KOG0339|consensus
Probab=94.85 E-value=0.25 Score=39.52 Aligned_cols=70 Identities=16% Similarity=0.264 Sum_probs=52.8
Q ss_pred CC-EEEEecchHHHHHHHHHHHhC----CCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeC------CcccccccCCC
Q psy576 47 PP-VLVFVQSKERAQELYNELIYD----GINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTE------LLGRGIDFRTV 115 (159)
Q Consensus 47 ~~-~lif~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~------~~~~g~~i~~~ 115 (159)
+| .+|.|+|++-+..++...++. ++++..+||+.+.-++.+-++ -...++|||+ +--.++|+..+
T Consensus 296 gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk----~g~EivVaTPgRlid~VkmKatn~~rv 371 (731)
T KOG0339|consen 296 GPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELK----EGAEIVVATPGRLIDMVKMKATNLSRV 371 (731)
T ss_pred CCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhh----cCCeEEEechHHHHHHHHhhcccceee
Confidence 45 667899999999988776554 788999999999877766555 4566899997 23457788777
Q ss_pred cEEEE
Q psy576 116 RLVVN 120 (159)
Q Consensus 116 ~~vi~ 120 (159)
++++.
T Consensus 372 S~LV~ 376 (731)
T KOG0339|consen 372 SYLVL 376 (731)
T ss_pred eEEEE
Confidence 77664
No 185
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=94.70 E-value=0.67 Score=32.06 Aligned_cols=96 Identities=15% Similarity=0.133 Sum_probs=59.8
Q ss_pred ceeeeecCCCCChHHH-HHHH---HhcC---CCCCEEEEecchHHHHHHHHHHHhC----CCceEEEecCCCHHHHHHHH
Q psy576 21 ARMYRETEGAGSPVQA-QDET---ILLG---IEPPVLVFVQSKERAQELYNELIYD----GINVDVIHSDRTQKQRDNVV 89 (159)
Q Consensus 21 ~~~~~~~~~~~~k~~~-l~~~---~~~~---~~~~~lif~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~ 89 (159)
+..+.......+|... +..+ +... .+.+++|.+++...+......+... +..+..++|+.+..+..+.+
T Consensus 37 ~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (203)
T cd00268 37 RDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKL 116 (203)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh
Confidence 3455555555677544 2222 2222 3457999999999888877666443 66788899988765544333
Q ss_pred HHHhcCCeeEEEEeCC-----c-ccccccCCCcEEEE
Q psy576 90 RSFRTGRIWILITTEL-----L-GRGIDFRTVRLVVN 120 (159)
Q Consensus 90 ~~f~~~~~~vlv~t~~-----~-~~g~~i~~~~~vi~ 120 (159)
+ +...|+|+|.- + ....++++++.+|.
T Consensus 117 ~----~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIv 149 (203)
T cd00268 117 K----RGPHIVVATPGRLLDLLERGKLDLSKVKYLVL 149 (203)
T ss_pred c----CCCCEEEEChHHHHHHHHcCCCChhhCCEEEE
Confidence 2 56789999952 1 22245567776664
No 186
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=94.63 E-value=0.69 Score=37.88 Aligned_cols=82 Identities=11% Similarity=0.177 Sum_probs=64.8
Q ss_pred eeeeecCCCCChHHHH-HHHHhcCCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCeeEE
Q psy576 22 RMYRETEGAGSPVQAQ-DETILLGIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWIL 100 (159)
Q Consensus 22 ~~~~~~~~~~~k~~~l-~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vl 100 (159)
..+.......+|-... ...+. ..+.++|.+++.+-+..-...|++.++++..+|+..+..++..++.....+..+++
T Consensus 30 dvlv~~PTG~GKTl~y~lpal~--~~g~~lVisPl~sL~~dq~~~l~~~gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il 107 (591)
T TIGR01389 30 DVLVVMPTGGGKSLCYQVPALL--LKGLTVVISPLISLMKDQVDQLRAAGVAAAYLNSTLSAKEQQDIEKALVNGELKLL 107 (591)
T ss_pred CEEEEcCCCccHhHHHHHHHHH--cCCcEEEEcCCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCCEE
Confidence 4556666666776652 22222 35678999999999888888888889999999999999999999999999999999
Q ss_pred EEeCC
Q psy576 101 ITTEL 105 (159)
Q Consensus 101 v~t~~ 105 (159)
+.|+-
T Consensus 108 ~~tpe 112 (591)
T TIGR01389 108 YVAPE 112 (591)
T ss_pred EEChh
Confidence 88753
No 187
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=94.13 E-value=0.38 Score=34.78 Aligned_cols=91 Identities=19% Similarity=0.225 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHhC---CCceEEEecCCCHHHHHHHHHHHhcCC----eeEEEEeCCcccccccCCCcEEEEecCCCCHHH
Q psy576 57 ERAQELYNELIYD---GINVDVIHSDRTQKQRDNVVRSFRTGR----IWILITTELLGRGIDFRTVRLVVNYDFPSSAIS 129 (159)
Q Consensus 57 ~~~~~l~~~l~~~---~~~~~~~~~~~~~~~r~~~~~~f~~~~----~~vlv~t~~~~~g~~i~~~~~vi~~~~~~~~~~ 129 (159)
...+++...|... ++.+..+.++.+... -.|.++. ..|+|+-+.+++|+.++.+.+.+....+...+.
T Consensus 94 ~s~~ei~~~l~~~~~~~~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~DT 168 (239)
T PF10593_consen 94 PSWEEIKPELPKAISDGIEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYDT 168 (239)
T ss_pred cCHHHHHHHHHHHHhcCceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEecCCCchHHH
Confidence 3344554444322 588899997655433 3344433 789999999999999999999999888888888
Q ss_pred HHHHHhhcc-CCCCcceEEEEecC
Q psy576 130 YIHRIGRAG-RGGREGKAVTFFTK 152 (159)
Q Consensus 130 ~~q~~GR~~-R~g~~g~~~~~~~~ 152 (159)
+.||.-..| |.|-.+.|-+|.++
T Consensus 169 L~QmgRwFGYR~gY~dl~Ri~~~~ 192 (239)
T PF10593_consen 169 LMQMGRWFGYRPGYEDLCRIYMPE 192 (239)
T ss_pred HHHHhhcccCCcccccceEEecCH
Confidence 888775544 33335666666643
No 188
>KOG1513|consensus
Probab=94.04 E-value=0.072 Score=44.64 Aligned_cols=62 Identities=24% Similarity=0.427 Sum_probs=48.8
Q ss_pred HHHHhcCCeeEEEEeCCcccccccCCCc--------EEEEecCCCCHHHHHHHHhhccCCCC-cceEEEEe
Q psy576 89 VRSFRTGRIWILITTELLGRGIDFRTVR--------LVVNYDFPSSAISYIHRIGRAGRGGR-EGKAVTFF 150 (159)
Q Consensus 89 ~~~f~~~~~~vlv~t~~~~~g~~i~~~~--------~vi~~~~~~~~~~~~q~~GR~~R~g~-~g~~~~~~ 150 (159)
-+.|..|+..|-|-+.++.-|+.++.-. +=|.+..||+..--+|+.||+.|..+ +++-++|.
T Consensus 850 KqrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFl 920 (1300)
T KOG1513|consen 850 KQRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFL 920 (1300)
T ss_pred HhhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEE
Confidence 4568899999999999999999887543 34567899999999999999999864 24444443
No 189
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=93.93 E-value=0.48 Score=38.20 Aligned_cols=68 Identities=25% Similarity=0.427 Sum_probs=51.4
Q ss_pred EEEEecchHHHHHHHHHHHhC-----CCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeC-----Ccccc-cccCCCcE
Q psy576 49 VLVFVQSKERAQELYNELIYD-----GINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTE-----LLGRG-IDFRTVRL 117 (159)
Q Consensus 49 ~lif~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~-----~~~~g-~~i~~~~~ 117 (159)
+||+++|++-|..+++.+... ++.+..++|+.+...+. +.++.| .+|+|+|+ .+.++ +++..+.+
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~---~~l~~~-~~ivVaTPGRllD~i~~~~l~l~~v~~ 177 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQI---EALKRG-VDIVVATPGRLLDLIKRGKLDLSGVET 177 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHH---HHHhcC-CCEEEECccHHHHHHHcCCcchhhcCE
Confidence 999999999999998877542 46788999998877666 444446 89999997 34444 67777776
Q ss_pred EEE
Q psy576 118 VVN 120 (159)
Q Consensus 118 vi~ 120 (159)
+|.
T Consensus 178 lVl 180 (513)
T COG0513 178 LVL 180 (513)
T ss_pred EEe
Confidence 663
No 190
>KOG0347|consensus
Probab=93.54 E-value=0.26 Score=39.79 Aligned_cols=52 Identities=21% Similarity=0.256 Sum_probs=45.5
Q ss_pred EEEEecchHHHHHHHHHHHhC----CCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeC
Q psy576 49 VLVFVQSKERAQELYNELIYD----GINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTE 104 (159)
Q Consensus 49 ~lif~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~ 104 (159)
.||+.+|++-|..+.+.|.+. ++.+..+.||++.+.+.+++.+ ...|+|||+
T Consensus 266 ~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~----~p~IVVATP 321 (731)
T KOG0347|consen 266 ALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQ----RPDIVVATP 321 (731)
T ss_pred eEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhc----CCCEEEecc
Confidence 899999999999999988664 7889999999999887777766 677999997
No 191
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=92.29 E-value=4.7 Score=31.94 Aligned_cols=69 Identities=14% Similarity=0.181 Sum_probs=48.1
Q ss_pred CEEEEecchHHHHHHHHHHHhC----CCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCC------cccccccCCCcE
Q psy576 48 PVLVFVQSKERAQELYNELIYD----GINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTEL------LGRGIDFRTVRL 117 (159)
Q Consensus 48 ~~lif~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~------~~~g~~i~~~~~ 117 (159)
++||.+++++-+..+.+.+... ++.+..++|+.+....... + .+..+|+|+|+- ....+++..+.+
T Consensus 77 ~aLil~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l-~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~ 152 (456)
T PRK10590 77 RALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMK---L-RGGVDVLVATPGRLLDLEHQNAVKLDQVEI 152 (456)
T ss_pred eEEEEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHH---H-cCCCcEEEEChHHHHHHHHcCCcccccceE
Confidence 5999999999998888877543 5677888998876554322 2 356789999962 223445666776
Q ss_pred EEE
Q psy576 118 VVN 120 (159)
Q Consensus 118 vi~ 120 (159)
+|.
T Consensus 153 lVi 155 (456)
T PRK10590 153 LVL 155 (456)
T ss_pred EEe
Confidence 664
No 192
>KOG0338|consensus
Probab=92.15 E-value=0.95 Score=36.39 Aligned_cols=70 Identities=23% Similarity=0.236 Sum_probs=51.4
Q ss_pred CCEEEEecchHHHHHHHHHHHhC----CCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCC-------cccccccCCC
Q psy576 47 PPVLVFVQSKERAQELYNELIYD----GINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTEL-------LGRGIDFRTV 115 (159)
Q Consensus 47 ~~~lif~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~-------~~~g~~i~~~ 115 (159)
-++||.|+|++-+..++...++. .+.++..-||++-..++.++. ...+|+|+|+= =..++|+.++
T Consensus 253 TRVLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LR----s~PDIVIATPGRlIDHlrNs~sf~ldsi 328 (691)
T KOG0338|consen 253 TRVLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLR----SRPDIVIATPGRLIDHLRNSPSFNLDSI 328 (691)
T ss_pred eeEEEEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHh----hCCCEEEecchhHHHHhccCCCccccce
Confidence 47999999999888877765443 678889999999887665554 45889999972 2345666666
Q ss_pred cEEEE
Q psy576 116 RLVVN 120 (159)
Q Consensus 116 ~~vi~ 120 (159)
.++|.
T Consensus 329 EVLvl 333 (691)
T KOG0338|consen 329 EVLVL 333 (691)
T ss_pred eEEEe
Confidence 66554
No 193
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=91.91 E-value=3.1 Score=34.30 Aligned_cols=81 Identities=19% Similarity=0.261 Sum_probs=62.0
Q ss_pred eeeeecCCCCChHHH-HHHHHhcCCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCeeEE
Q psy576 22 RMYRETEGAGSPVQA-QDETILLGIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWIL 100 (159)
Q Consensus 22 ~~~~~~~~~~~k~~~-l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vl 100 (159)
..+.......+|-.. +.-.+. ..+.+||.+++.+-+......++..++.+..+++..+..+...+++....++.+++
T Consensus 42 dvlv~apTGsGKTl~y~lpal~--~~g~tlVisPl~sL~~dqv~~l~~~gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il 119 (607)
T PRK11057 42 DCLVVMPTGGGKSLCYQIPALV--LDGLTLVVSPLISLMKDQVDQLLANGVAAACLNSTQTREQQLEVMAGCRTGQIKLL 119 (607)
T ss_pred CEEEEcCCCchHHHHHHHHHHH--cCCCEEEEecHHHHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEE
Confidence 344555555666553 222222 34679999999999988888888889999999999999988888888889999998
Q ss_pred EEeC
Q psy576 101 ITTE 104 (159)
Q Consensus 101 v~t~ 104 (159)
++|+
T Consensus 120 ~~tP 123 (607)
T PRK11057 120 YIAP 123 (607)
T ss_pred EECh
Confidence 8874
No 194
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=91.72 E-value=1.2 Score=34.87 Aligned_cols=95 Identities=13% Similarity=0.147 Sum_probs=59.4
Q ss_pred eeeeecCCCCChHHH-HHHHH----hc----CCCCCEEEEecchHHHHHHHHHHHh----CCCceEEEecCCCHHHHHHH
Q psy576 22 RMYRETEGAGSPVQA-QDETI----LL----GIEPPVLVFVQSKERAQELYNELIY----DGINVDVIHSDRTQKQRDNV 88 (159)
Q Consensus 22 ~~~~~~~~~~~k~~~-l~~~~----~~----~~~~~~lif~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~ 88 (159)
..+.......+|... +.-++ .. ....++||.+++.+-+..+++.+.. .+.++..++|+.+.......
T Consensus 40 d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~ 119 (434)
T PRK11192 40 DVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEV 119 (434)
T ss_pred CEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHH
Confidence 444455555677654 22222 11 1234699999999988887765543 36789999999887665443
Q ss_pred HHHHhcCCeeEEEEeCC------cccccccCCCcEEEE
Q psy576 89 VRSFRTGRIWILITTEL------LGRGIDFRTVRLVVN 120 (159)
Q Consensus 89 ~~~f~~~~~~vlv~t~~------~~~g~~i~~~~~vi~ 120 (159)
+ .+..+|+|+|+- ....++...+.++|.
T Consensus 120 l----~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lVi 153 (434)
T PRK11192 120 F----SENQDIVVATPGRLLQYIKEENFDCRAVETLIL 153 (434)
T ss_pred h----cCCCCEEEEChHHHHHHHHcCCcCcccCCEEEE
Confidence 3 345679999962 123455666776664
No 195
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=91.53 E-value=3.7 Score=36.45 Aligned_cols=82 Identities=11% Similarity=0.106 Sum_probs=60.4
Q ss_pred eeeeecCCCCChHHH-HHHHHhcCCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhc--CCee
Q psy576 22 RMYRETEGAGSPVQA-QDETILLGIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRT--GRIW 98 (159)
Q Consensus 22 ~~~~~~~~~~~k~~~-l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~--~~~~ 98 (159)
..+..+....+|-.. +.-.+. ..+.+||.+++++-+..-...|...++++..+.++++..++.+++..+.. ++++
T Consensus 477 DVLVimPTGSGKSLcYQLPAL~--~~GiTLVISPLiSLmqDQV~~L~~~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ 554 (1195)
T PLN03137 477 DVFVLMPTGGGKSLTYQLPALI--CPGITLVISPLVSLIQDQIMNLLQANIPAASLSAGMEWAEQLEILQELSSEYSKYK 554 (1195)
T ss_pred CEEEEcCCCccHHHHHHHHHHH--cCCcEEEEeCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHhcCCCCC
Confidence 344445555555554 222222 34679999999998875555566778999999999999999999998876 8899
Q ss_pred EEEEeCC
Q psy576 99 ILITTEL 105 (159)
Q Consensus 99 vlv~t~~ 105 (159)
||++|+-
T Consensus 555 ILyvTPE 561 (1195)
T PLN03137 555 LLYVTPE 561 (1195)
T ss_pred EEEEChH
Confidence 9999963
No 196
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=91.47 E-value=1.6 Score=36.14 Aligned_cols=95 Identities=16% Similarity=0.120 Sum_probs=58.3
Q ss_pred eeeeecCCCCChHHHH-HHHH---h-cCCCCCEEEEecchHHHHHHHHHHHhC-----CCceEEEecCCCHHHHHHHHHH
Q psy576 22 RMYRETEGAGSPVQAQ-DETI---L-LGIEPPVLVFVQSKERAQELYNELIYD-----GINVDVIHSDRTQKQRDNVVRS 91 (159)
Q Consensus 22 ~~~~~~~~~~~k~~~l-~~~~---~-~~~~~~~lif~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~ 91 (159)
..+.....-.+|.... .-++ . .....++||.|++++-+..+++.+... ++.+..+||+.+.......+
T Consensus 45 dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l-- 122 (629)
T PRK11634 45 DVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL-- 122 (629)
T ss_pred CEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHh--
Confidence 3444444556676542 2222 2 223457999999999998887766432 67888999998765443322
Q ss_pred HhcCCeeEEEEeCC-----ccc-ccccCCCcEEEE
Q psy576 92 FRTGRIWILITTEL-----LGR-GIDFRTVRLVVN 120 (159)
Q Consensus 92 f~~~~~~vlv~t~~-----~~~-g~~i~~~~~vi~ 120 (159)
.....|+|+|+- +.+ .+++..+..||.
T Consensus 123 --~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVl 155 (629)
T PRK11634 123 --RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVL 155 (629)
T ss_pred --cCCCCEEEECHHHHHHHHHcCCcchhhceEEEe
Confidence 245779999952 222 345666666553
No 197
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=91.23 E-value=1.7 Score=34.41 Aligned_cols=95 Identities=14% Similarity=0.134 Sum_probs=60.5
Q ss_pred eeeeecCCCCChHHH-HHHHHh---cC-CCCCEEEEecchHHHHHHHHHHHhC-----CCceEEEecCCCHHHHHHHHHH
Q psy576 22 RMYRETEGAGSPVQA-QDETIL---LG-IEPPVLVFVQSKERAQELYNELIYD-----GINVDVIHSDRTQKQRDNVVRS 91 (159)
Q Consensus 22 ~~~~~~~~~~~k~~~-l~~~~~---~~-~~~~~lif~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~ 91 (159)
..+...+...+|... +.-++. .. ...+++|.++|++-+..+.+.++.. +..+..++|+.+...+...++
T Consensus 43 dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~- 121 (460)
T PRK11776 43 DVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLE- 121 (460)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhc-
Confidence 455555555677754 223332 11 2336899999999999888877542 567888999988765543332
Q ss_pred HhcCCeeEEEEeCC-----c-ccccccCCCcEEEE
Q psy576 92 FRTGRIWILITTEL-----L-GRGIDFRTVRLVVN 120 (159)
Q Consensus 92 f~~~~~~vlv~t~~-----~-~~g~~i~~~~~vi~ 120 (159)
...+|+|+|+- + ...+++.++..+|.
T Consensus 122 ---~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lVi 153 (460)
T PRK11776 122 ---HGAHIIVGTPGRILDHLRKGTLDLDALNTLVL 153 (460)
T ss_pred ---CCCCEEEEChHHHHHHHHcCCccHHHCCEEEE
Confidence 45779999952 2 13456667776664
No 198
>PRK09401 reverse gyrase; Reviewed
Probab=91.19 E-value=3 Score=37.21 Aligned_cols=81 Identities=14% Similarity=0.125 Sum_probs=56.0
Q ss_pred eeecCCCCChHHHHHHHH--hcCCCCCEEEEecchHHHHHHHHHHHhC----CCceEEEe--cCCCHHHHHHHHHHHhcC
Q psy576 24 YRETEGAGSPVQAQDETI--LLGIEPPVLVFVQSKERAQELYNELIYD----GINVDVIH--SDRTQKQRDNVVRSFRTG 95 (159)
Q Consensus 24 ~~~~~~~~~k~~~l~~~~--~~~~~~~~lif~~~~~~~~~l~~~l~~~----~~~~~~~~--~~~~~~~r~~~~~~f~~~ 95 (159)
........+|...+.-.. ....+.+++|.++|++-+..+++.++.. +..+..+. +.++..++.+..+.+.++
T Consensus 99 ~i~ApTGsGKT~f~l~~~~~l~~~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~ 178 (1176)
T PRK09401 99 AIIAPTGVGKTTFGLVMSLYLAKKGKKSYIIFPTRLLVEQVVEKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEG 178 (1176)
T ss_pred EEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcC
Confidence 344444567775533222 1224578999999999999998888654 34444444 445567788888889999
Q ss_pred CeeEEEEeC
Q psy576 96 RIWILITTE 104 (159)
Q Consensus 96 ~~~vlv~t~ 104 (159)
..+|+|+|+
T Consensus 179 ~~~IlV~Tp 187 (1176)
T PRK09401 179 DFDILVTTS 187 (1176)
T ss_pred CCCEEEECH
Confidence 999999995
No 199
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=91.01 E-value=0.6 Score=27.92 Aligned_cols=37 Identities=14% Similarity=0.180 Sum_probs=30.7
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCC
Q psy576 45 IEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRT 81 (159)
Q Consensus 45 ~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 81 (159)
...++++||.+-..+...+..|+..|+++..+.|++.
T Consensus 50 ~~~~vvl~c~~g~~a~~~a~~L~~~G~~v~~l~GG~~ 86 (90)
T cd01524 50 KDKEIIVYCAVGLRGYIAARILTQNGFKVKNLDGGYK 86 (90)
T ss_pred CCCcEEEEcCCChhHHHHHHHHHHCCCCEEEecCCHH
Confidence 4568999999877888888889888888888999863
No 200
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=90.68 E-value=1.2 Score=36.48 Aligned_cols=70 Identities=11% Similarity=0.254 Sum_probs=48.7
Q ss_pred CCEEEEecchHHHHHHHHHHHhC----CCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCC-----ccc--ccccCCC
Q psy576 47 PPVLVFVQSKERAQELYNELIYD----GINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTEL-----LGR--GIDFRTV 115 (159)
Q Consensus 47 ~~~lif~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~-----~~~--g~~i~~~ 115 (159)
.++||.+++++-+..+++.+... ++.+..++|+.+.....+.+ .+..+|+|+|+- +.. .+++..+
T Consensus 85 ~raLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l----~~~~dIiV~TP~rL~~~l~~~~~~~l~~v 160 (572)
T PRK04537 85 PRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELL----QQGVDVIIATPGRLIDYVKQHKVVSLHAC 160 (572)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHH----hCCCCEEEECHHHHHHHHHhccccchhhe
Confidence 47999999999999888876543 66788999998876554433 345789999952 221 2455556
Q ss_pred cEEEE
Q psy576 116 RLVVN 120 (159)
Q Consensus 116 ~~vi~ 120 (159)
.++|.
T Consensus 161 ~~lVi 165 (572)
T PRK04537 161 EICVL 165 (572)
T ss_pred eeeEe
Confidence 65553
No 201
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=90.49 E-value=2 Score=28.20 Aligned_cols=80 Identities=16% Similarity=0.011 Sum_probs=41.7
Q ss_pred HHHHHHHHhc--CCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCcccccc
Q psy576 34 VQAQDETILL--GIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGRGID 111 (159)
Q Consensus 34 ~~~l~~~~~~--~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~g~~ 111 (159)
...+.+++.+ ..+.+++|+|.+.+.++.+-+.|.......-+.|+-.... ....-.|+|+++... -.
T Consensus 15 ~~~~c~L~~k~~~~g~rv~V~~~d~~~a~~lD~~LW~~~~~sFlPH~~~~~~---------~~~~~PV~i~~~~~~--~~ 83 (137)
T PF04364_consen 15 ERFACRLAEKAYRQGQRVLVLCPDEEQAEALDELLWTFSPDSFLPHGLAGEP---------PAARQPVLITWDQEA--NP 83 (137)
T ss_dssp HHHHHHHHHHHHHTT--EEEE-SSHHHHHHHHHHTTTSSTT----EEETT-S---------STT--SEEEE-TTS-----
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHCCCCCCCCCCcccCCC---------CCCCCeEEEecCccc--CC
Confidence 4566666653 3567899999999999999999987755555556542221 111246888886642 12
Q ss_pred cCCCcEEEEecCC
Q psy576 112 FRTVRLVVNYDFP 124 (159)
Q Consensus 112 i~~~~~vi~~~~~ 124 (159)
.+..+++||++..
T Consensus 84 ~~~~~vLinL~~~ 96 (137)
T PF04364_consen 84 NNHADVLINLSGE 96 (137)
T ss_dssp -S--SEEEE--SS
T ss_pred CCCCCEEEECCCC
Confidence 2336778887543
No 202
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=90.40 E-value=0.5 Score=28.84 Aligned_cols=37 Identities=19% Similarity=0.170 Sum_probs=31.2
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCC
Q psy576 45 IEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRT 81 (159)
Q Consensus 45 ~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 81 (159)
..++++++|.+-..+...+..|...|+.+..+.|++.
T Consensus 60 ~~~~ivv~C~~G~rs~~aa~~L~~~G~~~~~l~GG~~ 96 (100)
T cd01523 60 DDQEVTVICAKEGSSQFVAELLAERGYDVDYLAGGMK 96 (100)
T ss_pred CCCeEEEEcCCCCcHHHHHHHHHHcCceeEEeCCcHH
Confidence 4568999999888888899999999988888888863
No 203
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=90.10 E-value=0.36 Score=41.61 Aligned_cols=46 Identities=22% Similarity=0.167 Sum_probs=42.2
Q ss_pred CeeEEEEeCCcccccccCCCcEEEEecCCCCHHHHHHHHhhccCCC
Q psy576 96 RIWILITTELLGRGIDFRTVRLVVNYDFPSSAISYIHRIGRAGRGG 141 (159)
Q Consensus 96 ~~~vlv~t~~~~~g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g 141 (159)
..+.+++.+++.+|+|.|.+-+++.+....|...-.|.+||..|.-
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~~ 546 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRLP 546 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceecc
Confidence 5679999999999999999999999998889999999999999954
No 204
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=90.07 E-value=1.1 Score=26.70 Aligned_cols=39 Identities=23% Similarity=0.289 Sum_probs=31.6
Q ss_pred cCCCCCEEEEecchHHHHHHHHHHHhCCCc-eEEEecCCC
Q psy576 43 LGIEPPVLVFVQSKERAQELYNELIYDGIN-VDVIHSDRT 81 (159)
Q Consensus 43 ~~~~~~~lif~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~ 81 (159)
.....+++++|.+...+..++..|.+.+.+ +..+.|++.
T Consensus 53 ~~~~~~iv~~c~~g~~a~~~~~~l~~~G~~~v~~l~GG~~ 92 (100)
T smart00450 53 LDKDKPVVVYCRSGNRSAKAAWLLRELGFKNVYLLDGGYK 92 (100)
T ss_pred CCCCCeEEEEeCCCcHHHHHHHHHHHcCCCceEEecCCHH
Confidence 345568999999988999999999888876 778888863
No 205
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=90.01 E-value=5.1 Score=33.45 Aligned_cols=86 Identities=16% Similarity=0.068 Sum_probs=56.0
Q ss_pred ecCCCCChHHH--HHHHHhcCCCCCEEEEecchHHHHHHHHHHHh----CCCceEEEecCCCHHHHHHHHHHHhcCCeeE
Q psy576 26 ETEGAGSPVQA--QDETILLGIEPPVLVFVQSKERAQELYNELIY----DGINVDVIHSDRTQKQRDNVVRSFRTGRIWI 99 (159)
Q Consensus 26 ~~~~~~~k~~~--l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~v 99 (159)
.+...++|... +..+.....+.+++|.+++..-|...++.+.. .++.+..+.|+++++++.... ..+|
T Consensus 122 e~~TGeGKTla~~lp~~~~al~G~~v~VvTptreLA~qdae~~~~l~~~lGlsv~~i~gg~~~~~r~~~y------~~dI 195 (656)
T PRK12898 122 EMQTGEGKTLTATLPAGTAALAGLPVHVITVNDYLAERDAELMRPLYEALGLTVGCVVEDQSPDERRAAY------GADI 195 (656)
T ss_pred eeeCCCCcHHHHHHHHHHHhhcCCeEEEEcCcHHHHHHHHHHHHHHHhhcCCEEEEEeCCCCHHHHHHHc------CCCE
Confidence 33333555544 22333344567899999999988877776644 488999999999877655432 4578
Q ss_pred EEEeCCcccccccCCCcEE
Q psy576 100 LITTELLGRGIDFRTVRLV 118 (159)
Q Consensus 100 lv~t~~~~~g~~i~~~~~v 118 (159)
+++|.. +-|+|.-.-+.+
T Consensus 196 vygT~~-e~~FDyLrd~~~ 213 (656)
T PRK12898 196 TYCTNK-ELVFDYLRDRLA 213 (656)
T ss_pred EEECCC-chhhhhcccccc
Confidence 888854 347776444433
No 206
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=89.14 E-value=3.7 Score=34.73 Aligned_cols=74 Identities=16% Similarity=-0.008 Sum_probs=52.7
Q ss_pred ecCCCCChHHH--HHHHHhcCCCCCEEEEecchHHHHHHHHHHHh----CCCceEEEecCCCHHHHHHHHHHHhcCCeeE
Q psy576 26 ETEGAGSPVQA--QDETILLGIEPPVLVFVQSKERAQELYNELIY----DGINVDVIHSDRTQKQRDNVVRSFRTGRIWI 99 (159)
Q Consensus 26 ~~~~~~~k~~~--l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~v 99 (159)
.....++|... +...+....+.++.|.+++..-|...++.+.. .|+.+..++|+++.+++...+. .+|
T Consensus 75 em~TGeGKTLva~lpa~l~aL~G~~V~VvTpt~~LA~qdae~~~~l~~~LGLsv~~i~g~~~~~~r~~~y~------~dI 148 (745)
T TIGR00963 75 EMKTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAEWMGQVYRFLGLSVGLILSGMSPEERREAYA------CDI 148 (745)
T ss_pred eecCCCccHHHHHHHHHHHHHhCCCEEEEcCCHHHHHHHHHHHHHHhccCCCeEEEEeCCCCHHHHHHhcC------CCE
Confidence 33444555544 22334444566899999999988888877654 3789999999999887765553 689
Q ss_pred EEEeCC
Q psy576 100 LITTEL 105 (159)
Q Consensus 100 lv~t~~ 105 (159)
+++|..
T Consensus 149 vyGT~~ 154 (745)
T TIGR00963 149 TYGTNN 154 (745)
T ss_pred EEECCC
Confidence 999976
No 207
>KOG0389|consensus
Probab=88.90 E-value=4.2 Score=34.54 Aligned_cols=67 Identities=24% Similarity=0.208 Sum_probs=46.5
Q ss_pred HHHHHhcCCCCCEEEEecchHHHHHHHHHHHh-----CCCceEEEecCCCHHHHHHHHHHHhcC--CeeEEEEeCCcccc
Q psy576 37 QDETILLGIEPPVLVFVQSKERAQELYNELIY-----DGINVDVIHSDRTQKQRDNVVRSFRTG--RIWILITTELLGRG 109 (159)
Q Consensus 37 l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~-----~~~~~~~~~~~~~~~~r~~~~~~f~~~--~~~vlv~t~~~~~g 109 (159)
|.-+...+..+|=||.|++.. +-.|+++ ..+.+..+|| +..+|+++...+..+ .++||++|--+..+
T Consensus 439 layLkq~g~~gpHLVVvPsST----leNWlrEf~kwCPsl~Ve~YyG--Sq~ER~~lR~~i~~~~~~ydVllTTY~la~~ 512 (941)
T KOG0389|consen 439 LAYLKQIGNPGPHLVVVPSST----LENWLREFAKWCPSLKVEPYYG--SQDERRELRERIKKNKDDYDVLLTTYNLAAS 512 (941)
T ss_pred HHHHHHcCCCCCcEEEecchh----HHHHHHHHHHhCCceEEEeccC--cHHHHHHHHHHHhccCCCccEEEEEeecccC
Confidence 444445566788888888732 3333332 2567889999 579999999999885 78899999554433
No 208
>KOG0330|consensus
Probab=88.89 E-value=4.1 Score=31.76 Aligned_cols=79 Identities=18% Similarity=0.198 Sum_probs=53.4
Q ss_pred HHHHHhcCCCCCEEEEecchHHHHHHHHHHHhC----CCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCC-------
Q psy576 37 QDETILLGIEPPVLVFVQSKERAQELYNELIYD----GINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTEL------- 105 (159)
Q Consensus 37 l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~------- 105 (159)
|..++..-..-.++|.++|++-+..|++-+... |..+..+-||++...... + ...+..|||||+=
T Consensus 120 l~~LL~~p~~~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~--~--L~kkPhilVaTPGrL~dhl~ 195 (476)
T KOG0330|consen 120 LQRLLQEPKLFFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQAN--Q--LSKKPHILVATPGRLWDHLE 195 (476)
T ss_pred HHHHHcCCCCceEEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHH--H--hhcCCCEEEeCcHHHHHHHH
Confidence 444555433345999999999999998887665 678899999987653221 1 2246778999972
Q ss_pred cccccccCCCcEEE
Q psy576 106 LGRGIDFRTVRLVV 119 (159)
Q Consensus 106 ~~~g~~i~~~~~vi 119 (159)
-..|+++..+.+++
T Consensus 196 ~Tkgf~le~lk~LV 209 (476)
T KOG0330|consen 196 NTKGFSLEQLKFLV 209 (476)
T ss_pred hccCccHHHhHHHh
Confidence 13566666665544
No 209
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=88.86 E-value=2 Score=33.56 Aligned_cols=70 Identities=19% Similarity=0.261 Sum_probs=47.9
Q ss_pred CCEEEEecchHHHHHHHHHHHh----CCCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCC-----c-ccccccCCCc
Q psy576 47 PPVLVFVQSKERAQELYNELIY----DGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTEL-----L-GRGIDFRTVR 116 (159)
Q Consensus 47 ~~~lif~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~-----~-~~g~~i~~~~ 116 (159)
.++||.+++++-|..+++.+.. .++++..++|+.+....... + ....+|+|+|+- + ...+++..+.
T Consensus 84 ~~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~---l-~~~~~IlV~TP~~l~~~l~~~~~~l~~v~ 159 (423)
T PRK04837 84 PRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKV---L-ESGVDILIGTTGRLIDYAKQNHINLGAIQ 159 (423)
T ss_pred ceEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHH---h-cCCCCEEEECHHHHHHHHHcCCccccccc
Confidence 4699999999999988776543 36788899998765544332 2 235689999962 1 2245566677
Q ss_pred EEEE
Q psy576 117 LVVN 120 (159)
Q Consensus 117 ~vi~ 120 (159)
++|.
T Consensus 160 ~lVi 163 (423)
T PRK04837 160 VVVL 163 (423)
T ss_pred EEEE
Confidence 6664
No 210
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=88.74 E-value=1.2 Score=38.69 Aligned_cols=56 Identities=25% Similarity=0.267 Sum_probs=42.8
Q ss_pred CCeeEEEEeCCcccccccCCCcEEEEecCCCCHHHHHHHHhhccCCC----CcceEEEEec
Q psy576 95 GRIWILITTELLGRGIDFRTVRLVVNYDFPSSAISYIHRIGRAGRGG----REGKAVTFFT 151 (159)
Q Consensus 95 ~~~~vlv~t~~~~~g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g----~~g~~~~~~~ 151 (159)
..+++||.++++-.|+|.|.++.+. .|-|--.-.++|.+.|+.|.- ..|.++.|..
T Consensus 592 d~~kilIV~dmlLTGFDaP~L~TmY-vDK~Lk~H~L~QAisRtNR~~~~~K~~G~IVDf~g 651 (962)
T COG0610 592 DPLDLLIVVDMLLTGFDAPCLNTLY-VDKPLKYHNLIQAISRTNRVFPGKKKFGLIVDFRG 651 (962)
T ss_pred CCCCEEEEEccccccCCccccceEE-eccccccchHHHHHHHhccCCCCCCCCcEEEECcc
Confidence 5689999999999999999998554 456666677899999999944 2355555443
No 211
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=88.37 E-value=5.5 Score=26.34 Aligned_cols=96 Identities=19% Similarity=0.236 Sum_probs=61.3
Q ss_pred ceeeeecCCCCChHHHHHHH----HhcCCCCCEEEEecchHHHHHHHHHHHhC----CCceEEEecCCCHH-HHHHHHHH
Q psy576 21 ARMYRETEGAGSPVQAQDET----ILLGIEPPVLVFVQSKERAQELYNELIYD----GINVDVIHSDRTQK-QRDNVVRS 91 (159)
Q Consensus 21 ~~~~~~~~~~~~k~~~l~~~----~~~~~~~~~lif~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~-~r~~~~~~ 91 (159)
.+.+.......+|-....-. +.......+++.+++.+.+....+.+... +.++..++++.+.. +....+
T Consensus 15 ~~~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 92 (169)
T PF00270_consen 15 KNVLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHGGQSISEDQREVL-- 92 (169)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEESTTSCHHHHHHHHH--
T ss_pred CCEEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeecccccccccccccccccccccccccccccccccccccccc--
Confidence 44555556667777764422 22333458999999999999998887654 35788889987744 222222
Q ss_pred HhcCCeeEEEEeCC-cc-----cccccCCCcEEEE
Q psy576 92 FRTGRIWILITTEL-LG-----RGIDFRTVRLVVN 120 (159)
Q Consensus 92 f~~~~~~vlv~t~~-~~-----~g~~i~~~~~vi~ 120 (159)
.++..|+|+|.. +. ...++..++++|.
T Consensus 93 --~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iVi 125 (169)
T PF00270_consen 93 --SNQADILVTTPEQLLDLISNGKINISRLSLIVI 125 (169)
T ss_dssp --HTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEE
T ss_pred --cccccccccCcchhhccccccccccccceeecc
Confidence 667889999852 11 2235556776664
No 212
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=88.29 E-value=3.8 Score=35.35 Aligned_cols=69 Identities=14% Similarity=0.025 Sum_probs=49.6
Q ss_pred CChHHH--HHHHHhcCCCCCEEEEecchHHHHHHHHHHHh----CCCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeC
Q psy576 31 GSPVQA--QDETILLGIEPPVLVFVQSKERAQELYNELIY----DGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTE 104 (159)
Q Consensus 31 ~~k~~~--l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~ 104 (159)
++|... |..++....+..+.|.+++..-|...++++.. .|+.+..++|++++.++...+ ..+|+++|+
T Consensus 106 eGKTL~a~Lpa~~~al~G~~V~VvTpn~yLA~qd~e~m~~l~~~lGLtv~~i~gg~~~~~r~~~y------~~dIvygT~ 179 (896)
T PRK13104 106 EGKTLVATLPAYLNAISGRGVHIVTVNDYLAKRDSQWMKPIYEFLGLTVGVIYPDMSHKEKQEAY------KADIVYGTN 179 (896)
T ss_pred CCchHHHHHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCHHHHHHHh------CCCEEEECC
Confidence 444443 23333334556799999999999888887754 378899999999988876554 467999986
Q ss_pred C
Q psy576 105 L 105 (159)
Q Consensus 105 ~ 105 (159)
.
T Consensus 180 g 180 (896)
T PRK13104 180 N 180 (896)
T ss_pred h
Confidence 4
No 213
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=88.05 E-value=3.8 Score=27.09 Aligned_cols=80 Identities=18% Similarity=0.013 Sum_probs=51.5
Q ss_pred CCChHHHHHHHHhc--CCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCeeEEEE-eCCc
Q psy576 30 AGSPVQAQDETILL--GIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILIT-TELL 106 (159)
Q Consensus 30 ~~~k~~~l~~~~~~--~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~-t~~~ 106 (159)
...+...+.+++.+ ..+.+++|.|.+.+.++.+-+.|.......-+.|+..... ......|+|+ ++..
T Consensus 11 ~~~~~~~~c~L~~ka~~~g~rv~I~~~d~~~a~~lD~~LW~~~~~sFlPH~~~~~~---------~~~~~PV~l~~~~~~ 81 (142)
T PRK05728 11 LSALEALLCELAEKALRAGWRVLVQCEDEEQAEALDEALWTFRDESFLPHGLAGEG---------PAAGQPVLLTWPGKR 81 (142)
T ss_pred chhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhcCCCCCcCCCCCcCCCC---------CCCCCCEEEEcCCCC
Confidence 35677778888864 4678899999999999999999977654455556632211 0123467776 2211
Q ss_pred ccccccCCCcEEEEec
Q psy576 107 GRGIDFRTVRLVVNYD 122 (159)
Q Consensus 107 ~~g~~i~~~~~vi~~~ 122 (159)
+.+..+++||++
T Consensus 82 ----~~~~~~~LinL~ 93 (142)
T PRK05728 82 ----NANHRDLLINLD 93 (142)
T ss_pred ----CCCCCcEEEECC
Confidence 334456677664
No 214
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=87.98 E-value=1.7 Score=26.26 Aligned_cols=37 Identities=16% Similarity=0.103 Sum_probs=29.7
Q ss_pred CCCCCEEEEecchHHHHHHHHHHHhCCC-ceEEEecCC
Q psy576 44 GIEPPVLVFVQSKERAQELYNELIYDGI-NVDVIHSDR 80 (159)
Q Consensus 44 ~~~~~~lif~~~~~~~~~l~~~l~~~~~-~~~~~~~~~ 80 (159)
....+++++|.+...+...+..|+..|. ++..+.|++
T Consensus 54 ~~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~l~GG~ 91 (96)
T cd01529 54 GRATRYVLTCDGSLLARFAAQELLALGGKPVALLDGGT 91 (96)
T ss_pred CCCCCEEEEeCChHHHHHHHHHHHHcCCCCEEEeCCCH
Confidence 3566899999998888888888888777 577788876
No 215
>PRK13766 Hef nuclease; Provisional
Probab=87.96 E-value=6.5 Score=33.36 Aligned_cols=93 Identities=11% Similarity=0.095 Sum_probs=59.6
Q ss_pred eeeeecCCCCChHHH----HHHHHhcCCCCCEEEEecchHHHHHHHHHHHhC-C---CceEEEecCCCHHHHHHHHHHHh
Q psy576 22 RMYRETEGAGSPVQA----QDETILLGIEPPVLVFVQSKERAQELYNELIYD-G---INVDVIHSDRTQKQRDNVVRSFR 93 (159)
Q Consensus 22 ~~~~~~~~~~~k~~~----l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~-~---~~~~~~~~~~~~~~r~~~~~~f~ 93 (159)
......+...+|... +...+. ..++++|+.|++...+....+.+++. + .++..++|+.+..+|.+.+.
T Consensus 31 n~lv~~ptG~GKT~~a~~~i~~~l~-~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~r~~~~~--- 106 (773)
T PRK13766 31 NTLVVLPTGLGKTAIALLVIAERLH-KKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVVFTGEVSPEKRAELWE--- 106 (773)
T ss_pred CeEEEcCCCccHHHHHHHHHHHHHH-hCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEEEeCCCCHHHHHHHHh---
Confidence 455555665777763 333332 35678999999998887777766543 2 36788999988877765443
Q ss_pred cCCeeEEEEeCC-c-----ccccccCCCcEEEE
Q psy576 94 TGRIWILITTEL-L-----GRGIDFRTVRLVVN 120 (159)
Q Consensus 94 ~~~~~vlv~t~~-~-----~~g~~i~~~~~vi~ 120 (159)
+..|+|+|+- + ..-++...++.||.
T Consensus 107 --~~~iiv~T~~~l~~~l~~~~~~~~~~~liVv 137 (773)
T PRK13766 107 --KAKVIVATPQVIENDLIAGRISLEDVSLLIF 137 (773)
T ss_pred --CCCEEEECHHHHHHHHHcCCCChhhCcEEEE
Confidence 2468888853 1 22334455666664
No 216
>PTZ00110 helicase; Provisional
Probab=87.34 E-value=3.6 Score=33.51 Aligned_cols=70 Identities=23% Similarity=0.269 Sum_probs=47.2
Q ss_pred CCEEEEecchHHHHHHHHHHHhC----CCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeC-----Ccccc-cccCCCc
Q psy576 47 PPVLVFVQSKERAQELYNELIYD----GINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTE-----LLGRG-IDFRTVR 116 (159)
Q Consensus 47 ~~~lif~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~-----~~~~g-~~i~~~~ 116 (159)
..+||.+++++-|..+.+.+.+. ++.+..++|+.+....... +.+ ...|+|+|+ .+..+ +++..++
T Consensus 204 p~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~---l~~-~~~IlVaTPgrL~d~l~~~~~~l~~v~ 279 (545)
T PTZ00110 204 PIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYA---LRR-GVEILIACPGRLIDFLESNVTNLRRVT 279 (545)
T ss_pred cEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHH---HHc-CCCEEEECHHHHHHHHHcCCCChhhCc
Confidence 35899999999999888877654 4667888998776544332 222 467999996 23222 4556677
Q ss_pred EEEE
Q psy576 117 LVVN 120 (159)
Q Consensus 117 ~vi~ 120 (159)
++|.
T Consensus 280 ~lVi 283 (545)
T PTZ00110 280 YLVL 283 (545)
T ss_pred EEEe
Confidence 6654
No 217
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=87.32 E-value=7.1 Score=33.74 Aligned_cols=126 Identities=14% Similarity=0.098 Sum_probs=80.3
Q ss_pred ceeeeecCCCCChHHH-HHHHH---hcCCCCCEEEEecch----HHHHHHHHHHHhCC--CceEEEecCCCHHHHHHHHH
Q psy576 21 ARMYRETEGAGSPVQA-QDETI---LLGIEPPVLVFVQSK----ERAQELYNELIYDG--INVDVIHSDRTQKQRDNVVR 90 (159)
Q Consensus 21 ~~~~~~~~~~~~k~~~-l~~~~---~~~~~~~~lif~~~~----~~~~~l~~~l~~~~--~~~~~~~~~~~~~~r~~~~~ 90 (159)
++..+......+|-+. +.-++ ...+..++|++.+++ ++++++.+++...+ +.+..++|+.++++|.
T Consensus 86 ~~vvVtTgTgSGKTe~FllPIld~~l~~~~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~---- 161 (851)
T COG1205 86 RNVVVTTGTGSGKTESFLLPILDHLLRDPSARALLLYPTNALANDQAERLRELISDLPGKVTFGRYTGDTPPEERR---- 161 (851)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhhCcCccEEEEechhhhHhhHHHHHHHHHHhCCCcceeeeecCCCChHHHH----
Confidence 6777777777788776 22333 233555789999987 46667777776665 7889999999998876
Q ss_pred HHhcCCeeEEEEeC-Cccccccc---------CCCcEEEE-----ec--CCCCHHHHHHHHhhccCCCCcceEEEEe
Q psy576 91 SFRTGRIWILITTE-LLGRGIDF---------RTVRLVVN-----YD--FPSSAISYIHRIGRAGRGGREGKAVTFF 150 (159)
Q Consensus 91 ~f~~~~~~vlv~t~-~~~~g~~i---------~~~~~vi~-----~~--~~~~~~~~~q~~GR~~R~g~~g~~~~~~ 150 (159)
.+..+..+||+++. ++..-+-- ..+.+||. |. .=.+++..+-|..|..|..++...++..
T Consensus 162 ~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS~vA~llRRL~~~~~~~~~~~q~i~~ 238 (851)
T COG1205 162 AIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGSEVALLLRRLLRRLRRYGSPLQIICT 238 (851)
T ss_pred HHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccchhHHHHHHHHHHHHHhccCCCceEEEE
Confidence 56667888999874 44332211 13445543 11 1135666777777666655555555444
No 218
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=86.97 E-value=16 Score=30.74 Aligned_cols=109 Identities=20% Similarity=0.226 Sum_probs=70.9
Q ss_pred eeecCCCCChHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHhC-CCc-eEEE-------------------------
Q psy576 24 YRETEGAGSPVQAQDETILLGIEPPVLVFVQSKERAQELYNELIYD-GIN-VDVI------------------------- 76 (159)
Q Consensus 24 ~~~~~~~~~k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~-~~~-~~~~------------------------- 76 (159)
+.-+.+ .+|.-.++.++.. .+.++||.+++...|..++.-|+.. +-+ +.++
T Consensus 34 l~Gvtg-s~kt~~~a~~~~~-~~~p~Lvi~~n~~~A~ql~~el~~f~p~~~V~~f~sy~d~y~pe~y~P~~d~~~~k~~~ 111 (655)
T TIGR00631 34 LLGVTG-SGKTFTMANVIAQ-VNRPTLVIAHNKTLAAQLYNEFKEFFPENAVEYFVSYYDYYQPEAYVPSKDTYIEKDAS 111 (655)
T ss_pred EECCCC-cHHHHHHHHHHHH-hCCCEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeeecccCCccccCCCccccccccCC
Confidence 333444 6788888888876 4678999999999999999988665 223 4433
Q ss_pred ecCCCHHHHHHHHHHHhcCCeeEEEEeCCcccccccCC----CcEEEEecCCCCHHHHHHHH
Q psy576 77 HSDRTQKQRDNVVRSFRTGRIWILITTELLGRGIDFRT----VRLVVNYDFPSSAISYIHRI 134 (159)
Q Consensus 77 ~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~g~~i~~----~~~vi~~~~~~~~~~~~q~~ 134 (159)
.+.--...|..++..+..++..|+|+|-.+..|+--|. ....+..+...+...+..+.
T Consensus 112 ~~~~i~~~R~~al~~L~~~~~~ivVasv~~i~~l~~p~~~~~~~~~l~~G~~i~~~~l~~~L 173 (655)
T TIGR00631 112 INDEIERLRHSATRSLLERRDVIVVASVSCIYGLGSPEEYLKMVLHLEVGKEIDRRELLRRL 173 (655)
T ss_pred CChHHHHHHHHHHHHHHhCCCeEEEEcHHHhcCCCCHHHHHhccEEEeCCCCcCHHHHHHHH
Confidence 11112455677777777777778888755577776554 23444455555666655443
No 219
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=86.41 E-value=8.4 Score=32.75 Aligned_cols=78 Identities=15% Similarity=0.108 Sum_probs=52.2
Q ss_pred eeeeecCCCCChHHH-HHHH---HhcCCCCCEEEEecchHHHHHHHHHHHhC---CCceEEEecCCCHHHHHHHHHHHhc
Q psy576 22 RMYRETEGAGSPVQA-QDET---ILLGIEPPVLVFVQSKERAQELYNELIYD---GINVDVIHSDRTQKQRDNVVRSFRT 94 (159)
Q Consensus 22 ~~~~~~~~~~~k~~~-l~~~---~~~~~~~~~lif~~~~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~r~~~~~~f~~ 94 (159)
+.........+|... +.-+ +......++|+.+++++-+......+++. ++.+..++|+.+..++..+ +
T Consensus 53 nvvv~apTGSGKTla~~LPiL~~l~~~~~~~aL~l~PtraLa~q~~~~l~~l~~~~i~v~~~~Gdt~~~~r~~i----~- 127 (742)
T TIGR03817 53 HVVVATGTASGKSLAYQLPVLSALADDPRATALYLAPTKALAADQLRAVRELTLRGVRPATYDGDTPTEERRWA----R- 127 (742)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHhhCCCcEEEEEcChHHHHHHHHHHHHHhccCCeEEEEEeCCCCHHHHHHH----h-
Confidence 455555555667665 2222 22234557999999999999888887654 5678889999887665332 2
Q ss_pred CCeeEEEEeC
Q psy576 95 GRIWILITTE 104 (159)
Q Consensus 95 ~~~~vlv~t~ 104 (159)
...+|+|+|+
T Consensus 128 ~~~~IivtTP 137 (742)
T TIGR03817 128 EHARYVLTNP 137 (742)
T ss_pred cCCCEEEECh
Confidence 2367999995
No 220
>KOG0329|consensus
Probab=86.36 E-value=2.2 Score=31.37 Aligned_cols=69 Identities=20% Similarity=0.327 Sum_probs=49.9
Q ss_pred CEEEEecchHHHHHHHHHHHh-----CCCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeC------CcccccccCCCc
Q psy576 48 PVLVFVQSKERAQELYNELIY-----DGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTE------LLGRGIDFRTVR 116 (159)
Q Consensus 48 ~~lif~~~~~~~~~l~~~l~~-----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~------~~~~g~~i~~~~ 116 (159)
.++|.|.+++-|-.+...... .+.++.+++|+++.+.-++.++. -..|+|+|+ +-++.+++..+.
T Consensus 112 svlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~----~PhivVgTPGrilALvr~k~l~lk~vk 187 (387)
T KOG0329|consen 112 SVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKN----CPHIVVGTPGRILALVRNRSLNLKNVK 187 (387)
T ss_pred EEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhC----CCeEEEcCcHHHHHHHHhccCchhhcc
Confidence 588999999998888665432 26789999999987765555443 567889987 345566777777
Q ss_pred EEEE
Q psy576 117 LVVN 120 (159)
Q Consensus 117 ~vi~ 120 (159)
+.+.
T Consensus 188 hFvl 191 (387)
T KOG0329|consen 188 HFVL 191 (387)
T ss_pred eeeh
Confidence 6654
No 221
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=86.15 E-value=2.2 Score=25.97 Aligned_cols=38 Identities=16% Similarity=0.097 Sum_probs=29.2
Q ss_pred CCCCCEEEEecchHHHHHHHHHHHhCCCc-eEEEecCCC
Q psy576 44 GIEPPVLVFVQSKERAQELYNELIYDGIN-VDVIHSDRT 81 (159)
Q Consensus 44 ~~~~~~lif~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~ 81 (159)
.++.+++++|.+-..+...+.+|...|+. +..+.|++.
T Consensus 59 ~~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 97 (101)
T cd01518 59 LKGKKVLMYCTGGIRCEKASAYLKERGFKNVYQLKGGIL 97 (101)
T ss_pred cCCCEEEEECCCchhHHHHHHHHHHhCCcceeeechhHH
Confidence 35567999999877777788888888874 777888753
No 222
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=85.70 E-value=4.8 Score=32.07 Aligned_cols=71 Identities=15% Similarity=0.205 Sum_probs=49.2
Q ss_pred CCEEEEecchHHHHHHHHHHHhC----CCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCC------cccccccCCCc
Q psy576 47 PPVLVFVQSKERAQELYNELIYD----GINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTEL------LGRGIDFRTVR 116 (159)
Q Consensus 47 ~~~lif~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~------~~~g~~i~~~~ 116 (159)
.++|+.+++++-+..+++.++.. +.++..++|+.+.... .+.+..+..+|+|+|+- ....+.+..++
T Consensus 163 ~~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~---~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~ 239 (475)
T PRK01297 163 PRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQ---LKQLEARFCDILVATPGRLLDFNQRGEVHLDMVE 239 (475)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHH---HHHHhCCCCCEEEECHHHHHHHHHcCCcccccCc
Confidence 46999999999999888876543 6778888998765433 34555677889999963 12234455666
Q ss_pred EEEE
Q psy576 117 LVVN 120 (159)
Q Consensus 117 ~vi~ 120 (159)
+||.
T Consensus 240 ~lVi 243 (475)
T PRK01297 240 VMVL 243 (475)
T ss_pred eEEe
Confidence 6654
No 223
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=85.55 E-value=2.7 Score=26.04 Aligned_cols=37 Identities=22% Similarity=0.325 Sum_probs=29.5
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhCCC-c-eEEEecCCC
Q psy576 45 IEPPVLVFVQSKERAQELYNELIYDGI-N-VDVIHSDRT 81 (159)
Q Consensus 45 ~~~~~lif~~~~~~~~~l~~~l~~~~~-~-~~~~~~~~~ 81 (159)
.+.++++||.+-..+...+..|+..|+ + +..+.|+++
T Consensus 65 ~~~~ivv~C~~G~rs~~a~~~L~~~G~~~~v~~l~gG~~ 103 (109)
T cd01533 65 PRTPIVVNCAGRTRSIIGAQSLINAGLPNPVAALRNGTQ 103 (109)
T ss_pred CCCeEEEECCCCchHHHHHHHHHHCCCCcceeEecCCHH
Confidence 356899999988777778888888888 3 778888873
No 224
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=85.53 E-value=1.7 Score=26.25 Aligned_cols=36 Identities=17% Similarity=0.048 Sum_probs=29.1
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCC
Q psy576 45 IEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDR 80 (159)
Q Consensus 45 ~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 80 (159)
.+.+++++|.+-..+...+..|...|+++..+.|++
T Consensus 55 ~~~~iv~~c~~G~rs~~aa~~L~~~G~~v~~l~GG~ 90 (95)
T cd01534 55 RGARIVLADDDGVRADMTASWLAQMGWEVYVLEGGL 90 (95)
T ss_pred CCCeEEEECCCCChHHHHHHHHHHcCCEEEEecCcH
Confidence 356799999988778888888888888876778876
No 225
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=85.51 E-value=7.5 Score=33.27 Aligned_cols=75 Identities=15% Similarity=0.064 Sum_probs=51.7
Q ss_pred eeecCCCCChHHH--HHHHHhcCCCCCEEEEecchHHHHHHHHHHH----hCCCceEEEecCCC-HHHHHHHHHHHhcCC
Q psy576 24 YRETEGAGSPVQA--QDETILLGIEPPVLVFVQSKERAQELYNELI----YDGINVDVIHSDRT-QKQRDNVVRSFRTGR 96 (159)
Q Consensus 24 ~~~~~~~~~k~~~--l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~----~~~~~~~~~~~~~~-~~~r~~~~~~f~~~~ 96 (159)
.......++|... +..++....+..+.|.+++..-|...++.+. ..|+.+..+.|+++ +.++.... .
T Consensus 95 Iaem~TGeGKTL~a~lp~~l~al~G~~v~VvTpt~~LA~qd~e~~~~l~~~lGl~v~~i~g~~~~~~~r~~~y------~ 168 (790)
T PRK09200 95 IAEMQTGEGKTLTATMPLYLNALEGKGVHLITVNDYLAKRDAEEMGQVYEFLGLTVGLNFSDIDDASEKKAIY------E 168 (790)
T ss_pred eeeecCCCcchHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCcHHHHHHhc------C
Confidence 3444444566554 2333344567789999999988887776654 34889999999998 77766432 3
Q ss_pred eeEEEEeC
Q psy576 97 IWILITTE 104 (159)
Q Consensus 97 ~~vlv~t~ 104 (159)
.+|+++|.
T Consensus 169 ~dIvygT~ 176 (790)
T PRK09200 169 ADIIYTTN 176 (790)
T ss_pred CCEEEECC
Confidence 67888884
No 226
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=85.10 E-value=16 Score=28.31 Aligned_cols=122 Identities=15% Similarity=0.147 Sum_probs=78.8
Q ss_pred hccceeeeecCCCCChHHHHHHHHhc--CCCCCEEEEecchHHHHHHHHHHHhC--CCceEEEecCCCHHHHHHHHHHHh
Q psy576 18 SNLARMYRETEGAGSPVQAQDETILL--GIEPPVLVFVQSKERAQELYNELIYD--GINVDVIHSDRTQKQRDNVVRSFR 93 (159)
Q Consensus 18 ~~i~~~~~~~~~~~~k~~~l~~~~~~--~~~~~~lif~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~ 93 (159)
+........+.+ .+|.+.+.+-++. .+++.+.|-.+..+.+-+++..|++. +..+..+||+-++.- +
T Consensus 115 ~k~~~lv~AV~G-aGKTEMif~~i~~al~~G~~vciASPRvDVclEl~~Rlk~aF~~~~I~~Lyg~S~~~f--------r 185 (441)
T COG4098 115 QKEDTLVWAVTG-AGKTEMIFQGIEQALNQGGRVCIASPRVDVCLELYPRLKQAFSNCDIDLLYGDSDSYF--------R 185 (441)
T ss_pred hcCcEEEEEecC-CCchhhhHHHHHHHHhcCCeEEEecCcccchHHHHHHHHHhhccCCeeeEecCCchhc--------c
Confidence 344444555555 6888888877763 35677888999999999999999775 578999999865532 2
Q ss_pred cCCeeEEEEeCCcccccccCCCcEEEEe---cCCCCHHHHHHHHhhccCCCCcceEEEEecCC
Q psy576 94 TGRIWILITTELLGRGIDFRTVRLVVNY---DFPSSAISYIHRIGRAGRGGREGKAVTFFTKQ 153 (159)
Q Consensus 94 ~~~~~vlv~t~~~~~g~~i~~~~~vi~~---~~~~~~~~~~q~~GR~~R~g~~g~~~~~~~~~ 153 (159)
-.++|||.---.-+. ...+.+|.- ..|.+-+..+|.+-+-.|- ..|..+++....
T Consensus 186 ---~plvVaTtHQLlrFk-~aFD~liIDEVDAFP~~~d~~L~~Av~~ark-~~g~~IylTATp 243 (441)
T COG4098 186 ---APLVVATTHQLLRFK-QAFDLLIIDEVDAFPFSDDQSLQYAVKKARK-KEGATIYLTATP 243 (441)
T ss_pred ---ccEEEEehHHHHHHH-hhccEEEEeccccccccCCHHHHHHHHHhhc-ccCceEEEecCC
Confidence 356777743211111 245555542 3677777777777666665 345555554443
No 227
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=84.74 E-value=11 Score=26.04 Aligned_cols=67 Identities=12% Similarity=0.144 Sum_probs=47.3
Q ss_pred HHHHHHHhc--CCCCCEEEEecchHHHHHHHHHHHhC--CCceEEEecCCCHHHHHHHHHHHhcCCeeEEE
Q psy576 35 QAQDETILL--GIEPPVLVFVQSKERAQELYNELIYD--GINVDVIHSDRTQKQRDNVVRSFRTGRIWILI 101 (159)
Q Consensus 35 ~~l~~~~~~--~~~~~~lif~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv 101 (159)
++...++.. ..+.++-++-.+...++.+.+.|++. +..+...||.+++++...+++..+....++++
T Consensus 35 dl~~~l~~~~~~~~~~vfllG~~~~v~~~~~~~l~~~yP~l~i~g~~g~f~~~~~~~i~~~I~~s~~dil~ 105 (177)
T TIGR00696 35 DLMEELCQRAGKEKLPIFLYGGKPDVLQQLKVKLIKEYPKLKIVGAFGPLEPEERKAALAKIARSGAGIVF 105 (177)
T ss_pred HHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHHcCCCEEE
Confidence 444455543 23346767777788888999998776 66666668999888888888988887665444
No 228
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=84.45 E-value=5 Score=33.03 Aligned_cols=81 Identities=16% Similarity=0.229 Sum_probs=60.8
Q ss_pred ceeeeecCCCCChHHH--HHHHHhcCCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCee
Q psy576 21 ARMYRETEGAGSPVQA--QDETILLGIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIW 98 (159)
Q Consensus 21 ~~~~~~~~~~~~k~~~--l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ 98 (159)
...+..+....+|-.. +..++. .+.+||..+=.+-+..=.+.|+..|+.+..+++.++.+++..++..+..|+++
T Consensus 33 ~d~lvvmPTGgGKSlCyQiPAll~---~G~TLVVSPLiSLM~DQV~~l~~~Gi~A~~lnS~l~~~e~~~v~~~l~~g~~k 109 (590)
T COG0514 33 KDTLVVMPTGGGKSLCYQIPALLL---EGLTLVVSPLISLMKDQVDQLEAAGIRAAYLNSTLSREERQQVLNQLKSGQLK 109 (590)
T ss_pred CcEEEEccCCCCcchHhhhHHHhc---CCCEEEECchHHHHHHHHHHHHHcCceeehhhcccCHHHHHHHHHHHhcCcee
Confidence 3444444444444333 333333 56888998888877777777888899999999999999999999999999999
Q ss_pred EEEEeC
Q psy576 99 ILITTE 104 (159)
Q Consensus 99 vlv~t~ 104 (159)
+|.-++
T Consensus 110 lLyisP 115 (590)
T COG0514 110 LLYISP 115 (590)
T ss_pred EEEECc
Confidence 887664
No 229
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=84.22 E-value=11 Score=25.71 Aligned_cols=58 Identities=10% Similarity=0.142 Sum_probs=44.6
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhC--CCceE-EEecCCCHHHHHHHHHHHhcCCeeEEEE
Q psy576 45 IEPPVLVFVQSKERAQELYNELIYD--GINVD-VIHSDRTQKQRDNVVRSFRTGRIWILIT 102 (159)
Q Consensus 45 ~~~~~lif~~~~~~~~~l~~~l~~~--~~~~~-~~~~~~~~~~r~~~~~~f~~~~~~vlv~ 102 (159)
.+.++-++-.+.+.++++.+.|++. ++.+. ..+|-+++.+...+++..+....++++.
T Consensus 47 ~~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~~~pdiv~v 107 (172)
T PF03808_consen 47 RGKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRINASGPDIVFV 107 (172)
T ss_pred cCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHHHcCCCEEEE
Confidence 4457777888888889999999876 55555 5566678889999999999877765553
No 230
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=84.12 E-value=2.4 Score=26.38 Aligned_cols=36 Identities=17% Similarity=0.111 Sum_probs=28.7
Q ss_pred CCCCEEEEecch--HHHHHHHHHHHhCCCceEEEecCC
Q psy576 45 IEPPVLVFVQSK--ERAQELYNELIYDGINVDVIHSDR 80 (159)
Q Consensus 45 ~~~~~lif~~~~--~~~~~l~~~l~~~~~~~~~~~~~~ 80 (159)
.+.+++++|.+. ..+..++..|...|.++..+.|++
T Consensus 63 ~~~~vvvyc~~g~~~~s~~~a~~l~~~G~~v~~l~GG~ 100 (110)
T cd01521 63 KEKLFVVYCDGPGCNGATKAALKLAELGFPVKEMIGGL 100 (110)
T ss_pred CCCeEEEEECCCCCchHHHHHHHHHHcCCeEEEecCCH
Confidence 456899999975 367788888888888888888876
No 231
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=84.03 E-value=2.8 Score=25.36 Aligned_cols=36 Identities=14% Similarity=0.068 Sum_probs=28.7
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhCCC-ceEEEecCC
Q psy576 45 IEPPVLVFVQSKERAQELYNELIYDGI-NVDVIHSDR 80 (159)
Q Consensus 45 ~~~~~lif~~~~~~~~~l~~~l~~~~~-~~~~~~~~~ 80 (159)
.+.+++++|.+-..+...+..|.+.+. ++..+.|++
T Consensus 53 ~~~~iv~~c~~g~~s~~~~~~L~~~g~~~v~~l~gG~ 89 (99)
T cd01527 53 GANAIIFHCRSGMRTQQNAERLAAISAGEAYVLEGGL 89 (99)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHcCCccEEEeeCCH
Confidence 456899999998888888888887766 576788875
No 232
>KOG0331|consensus
Probab=83.97 E-value=4.8 Score=32.56 Aligned_cols=69 Identities=20% Similarity=0.268 Sum_probs=46.7
Q ss_pred CCEEEEecchHHHHHHHHHHHhC----CCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeC-----Ccccc-cccCCCc
Q psy576 47 PPVLVFVQSKERAQELYNELIYD----GINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTE-----LLGRG-IDFRTVR 116 (159)
Q Consensus 47 ~~~lif~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~-----~~~~g-~~i~~~~ 116 (159)
..+||.++|++-|..+.+.+.+. .+...+++|+.+...+.+-++ + ...|+|+|+ .++.| +++..++
T Consensus 166 P~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~---~-gvdiviaTPGRl~d~le~g~~~l~~v~ 241 (519)
T KOG0331|consen 166 PIVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLE---R-GVDVVIATPGRLIDLLEEGSLNLSRVT 241 (519)
T ss_pred CeEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHh---c-CCcEEEeCChHHHHHHHcCCcccccee
Confidence 45999999999999998887664 445889999988765443332 2 356888886 22222 3555566
Q ss_pred EEE
Q psy576 117 LVV 119 (159)
Q Consensus 117 ~vi 119 (159)
+++
T Consensus 242 ylV 244 (519)
T KOG0331|consen 242 YLV 244 (519)
T ss_pred EEE
Confidence 655
No 233
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=83.90 E-value=13 Score=32.42 Aligned_cols=75 Identities=13% Similarity=0.023 Sum_probs=50.3
Q ss_pred eecCCCCChHHH-HHHHH-hcCCCCCEEEEecchHHHHHHHHHHHhC----CCceEEEecCCCHHHHHHHHHHHhcCCee
Q psy576 25 RETEGAGSPVQA-QDETI-LLGIEPPVLVFVQSKERAQELYNELIYD----GINVDVIHSDRTQKQRDNVVRSFRTGRIW 98 (159)
Q Consensus 25 ~~~~~~~~k~~~-l~~~~-~~~~~~~~lif~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~ 98 (159)
.......+|... +.-++ ....+.+++|.+++..-|...++++... ++.+..+.|+++..++...+ ..+
T Consensus 112 AeaqTGeGKTLAf~LP~l~~aL~g~~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y------~~D 185 (970)
T PRK12899 112 TEMQTGEGKTLTAVMPLYLNALTGKPVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIY------QCD 185 (970)
T ss_pred EEeCCCCChHHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHc------CCC
Confidence 333443555444 33333 2223346888999999999888877543 77899999999988776443 367
Q ss_pred EEEEeCC
Q psy576 99 ILITTEL 105 (159)
Q Consensus 99 vlv~t~~ 105 (159)
|+++|+-
T Consensus 186 IVygTPg 192 (970)
T PRK12899 186 VVYGTAS 192 (970)
T ss_pred EEEECCC
Confidence 9999964
No 234
>KOG0343|consensus
Probab=83.88 E-value=3.3 Score=33.83 Aligned_cols=54 Identities=19% Similarity=0.200 Sum_probs=40.9
Q ss_pred CCCEEEEecchHHHHHHHHHHHhC----CCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeC
Q psy576 46 EPPVLVFVQSKERAQELYNELIYD----GINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTE 104 (159)
Q Consensus 46 ~~~~lif~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~ 104 (159)
+-.+||..+|++-|..+++.|.+. ++.++.+-||.... .+.-+-+...|||||+
T Consensus 141 GlGalIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k-----~E~eRi~~mNILVCTP 198 (758)
T KOG0343|consen 141 GLGALIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVK-----FELERISQMNILVCTP 198 (758)
T ss_pred CceeEEecchHHHHHHHHHHHHHHhhccccccceeecCchhH-----HHHHhhhcCCeEEech
Confidence 346999999999999999998764 66788888886543 2333346788999997
No 235
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=83.83 E-value=1.6 Score=27.81 Aligned_cols=36 Identities=19% Similarity=0.194 Sum_probs=30.4
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhCCC--ceEEEecCC
Q psy576 45 IEPPVLVFVQSKERAQELYNELIYDGI--NVDVIHSDR 80 (159)
Q Consensus 45 ~~~~~lif~~~~~~~~~l~~~l~~~~~--~~~~~~~~~ 80 (159)
.+.+++++|.+-..+...+..|...|+ ++..+.|++
T Consensus 71 ~~~~ivv~C~~G~rs~~aa~~L~~~G~~~~v~~l~GG~ 108 (122)
T cd01526 71 KDSPIYVVCRRGNDSQTAVRKLKELGLERFVRDIIGGL 108 (122)
T ss_pred CCCcEEEECCCCCcHHHHHHHHHHcCCccceeeecchH
Confidence 456899999987788888889998888 688889987
No 236
>KOG0350|consensus
Probab=83.51 E-value=4.4 Score=32.67 Aligned_cols=102 Identities=16% Similarity=0.164 Sum_probs=63.7
Q ss_pred cceeeeecCCCCChHHH----HHHHHhcC--CCCCEEEEecchHHHHHHHHHHHhC----CCceEEEecCCCHHH-HHHH
Q psy576 20 LARMYRETEGAGSPVQA----QDETILLG--IEPPVLVFVQSKERAQELYNELIYD----GINVDVIHSDRTQKQ-RDNV 88 (159)
Q Consensus 20 i~~~~~~~~~~~~k~~~----l~~~~~~~--~~~~~lif~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~-r~~~ 88 (159)
.+..++......+|... +.+++... +.-+++|.++++.-+-.++..+... |..++...|.-+-+. ....
T Consensus 183 ~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL 262 (620)
T KOG0350|consen 183 PRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQL 262 (620)
T ss_pred CCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHH
Confidence 45566666666666544 33444332 2236999999999999888887654 566666776543322 2222
Q ss_pred HHHHhcCCeeEEEEeCC-------cccccccCCCcEEEEe
Q psy576 89 VRSFRTGRIWILITTEL-------LGRGIDFRTVRLVVNY 121 (159)
Q Consensus 89 ~~~f~~~~~~vlv~t~~-------~~~g~~i~~~~~vi~~ 121 (159)
...-.....+|||+|+- .-.|+++.++.++|.-
T Consensus 263 ~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVID 302 (620)
T KOG0350|consen 263 ASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVID 302 (620)
T ss_pred hcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEec
Confidence 22223356799999973 3578888888877753
No 237
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=83.14 E-value=2.9 Score=25.04 Aligned_cols=37 Identities=16% Similarity=0.288 Sum_probs=27.3
Q ss_pred CCCCEEEEecc--hHHHHHHHHHHHhCCC-ceEEEecCCC
Q psy576 45 IEPPVLVFVQS--KERAQELYNELIYDGI-NVDVIHSDRT 81 (159)
Q Consensus 45 ~~~~~lif~~~--~~~~~~l~~~l~~~~~-~~~~~~~~~~ 81 (159)
+..+++++|.+ ...+...+..|...++ ++..+.|++.
T Consensus 49 ~~~~ivl~c~~G~~~~s~~aa~~L~~~G~~~v~~l~GG~~ 88 (92)
T cd01532 49 RDTPIVVYGEGGGEDLAPRAARRLSELGYTDVALLEGGLQ 88 (92)
T ss_pred CCCeEEEEeCCCCchHHHHHHHHHHHcCccCEEEccCCHH
Confidence 35689999998 3446777778887776 5777888763
No 238
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=83.03 E-value=12 Score=25.44 Aligned_cols=58 Identities=12% Similarity=0.123 Sum_probs=43.6
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhC--CCceEE-EecCCCHHHHHHHHHHHhcCCeeEEEE
Q psy576 45 IEPPVLVFVQSKERAQELYNELIYD--GINVDV-IHSDRTQKQRDNVVRSFRTGRIWILIT 102 (159)
Q Consensus 45 ~~~~~lif~~~~~~~~~l~~~l~~~--~~~~~~-~~~~~~~~~r~~~~~~f~~~~~~vlv~ 102 (159)
.+.++-++-.+.+.++.+.+.+++. +..+.. .||-+...+..++++..+....++++.
T Consensus 45 ~~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~i~~~I~~~~pdiv~v 105 (171)
T cd06533 45 KGLRVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHGYFGPEEEEEIIERINASGADILFV 105 (171)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHHHCCCcEEEEecCCCCChhhHHHHHHHHHHcCCCEEEE
Confidence 3567777888888888988888776 566554 788888888777888888877665553
No 239
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=82.97 E-value=1.3 Score=37.68 Aligned_cols=45 Identities=22% Similarity=0.254 Sum_probs=41.5
Q ss_pred eeEEEEeCCcccccccCCCcEEEEecCCCCHHHHHHHHhhccCCC
Q psy576 97 IWILITTELLGRGIDFRTVRLVVNYDFPSSAISYIHRIGRAGRGG 141 (159)
Q Consensus 97 ~~vlv~t~~~~~g~~i~~~~~vi~~~~~~~~~~~~q~~GR~~R~g 141 (159)
.+.|.+-.++-+|+|-|++=.++-+....|..+=.|.+||..|..
T Consensus 484 lRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLa 528 (985)
T COG3587 484 LRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLA 528 (985)
T ss_pred ceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeee
Confidence 578889999999999999999999999999999999999999954
No 240
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=82.56 E-value=4.2 Score=25.40 Aligned_cols=36 Identities=28% Similarity=0.278 Sum_probs=28.8
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhCCC-ceEEEecCC
Q psy576 45 IEPPVLVFVQSKERAQELYNELIYDGI-NVDVIHSDR 80 (159)
Q Consensus 45 ~~~~~lif~~~~~~~~~l~~~l~~~~~-~~~~~~~~~ 80 (159)
+..+++++|.+-..+..++..|...|. ++..+.|++
T Consensus 77 ~~~~iv~yc~~g~~s~~~~~~l~~~G~~~v~~l~GG~ 113 (118)
T cd01449 77 PDKPVIVYCGSGVTACVLLLALELLGYKNVRLYDGSW 113 (118)
T ss_pred CCCCEEEECCcHHHHHHHHHHHHHcCCCCeeeeCChH
Confidence 466899999998888888888988887 466777765
No 241
>KOG0334|consensus
Probab=82.46 E-value=5.2 Score=34.77 Aligned_cols=54 Identities=20% Similarity=0.307 Sum_probs=42.2
Q ss_pred CC-EEEEecchHHHHHHHHHHHhC----CCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeC
Q psy576 47 PP-VLVFVQSKERAQELYNELIYD----GINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTE 104 (159)
Q Consensus 47 ~~-~lif~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~ 104 (159)
+| ++|.++|++.+..|.+.++.. ++.+..++|+... ..-+...+.| ..|+|||.
T Consensus 438 GPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~---~~qiaelkRg-~eIvV~tp 496 (997)
T KOG0334|consen 438 GPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGI---SQQIAELKRG-AEIVVCTP 496 (997)
T ss_pred CceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccH---HHHHHHHhcC-CceEEecc
Confidence 44 888999999999998877543 7788899997644 4456777788 77888885
No 242
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=82.31 E-value=9.4 Score=32.84 Aligned_cols=70 Identities=16% Similarity=0.010 Sum_probs=49.7
Q ss_pred CCChHHH--HHHHHhcCCCCCEEEEecchHHHHHHHHHHH----hCCCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEe
Q psy576 30 AGSPVQA--QDETILLGIEPPVLVFVQSKERAQELYNELI----YDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITT 103 (159)
Q Consensus 30 ~~~k~~~--l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~----~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t 103 (159)
.++|... +...+....+..+-|.+++..-|...++.+. ..|+++..+.|+++..++...++ .+|+++|
T Consensus 104 GeGKTLva~lpa~l~aL~G~~V~IvTpn~yLA~rd~e~~~~l~~~LGlsv~~i~~~~~~~er~~~y~------~dI~ygT 177 (830)
T PRK12904 104 GEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLSVGVILSGMSPEERREAYA------ADITYGT 177 (830)
T ss_pred CCCcHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHhcC------CCeEEEC
Confidence 3455444 3333444456678899999987777766654 34889999999999998887753 6788888
Q ss_pred CC
Q psy576 104 EL 105 (159)
Q Consensus 104 ~~ 105 (159)
..
T Consensus 178 ~~ 179 (830)
T PRK12904 178 NN 179 (830)
T ss_pred Cc
Confidence 63
No 243
>PRK02362 ski2-like helicase; Provisional
Probab=81.99 E-value=10 Score=32.07 Aligned_cols=77 Identities=16% Similarity=0.180 Sum_probs=52.4
Q ss_pred ceeeeecCCCCChHHHHH-HHHhc-CCCCCEEEEecchHHHHHHHHHHHhC---CCceEEEecCCCHHHHHHHHHHHhcC
Q psy576 21 ARMYRETEGAGSPVQAQD-ETILL-GIEPPVLVFVQSKERAQELYNELIYD---GINVDVIHSDRTQKQRDNVVRSFRTG 95 (159)
Q Consensus 21 ~~~~~~~~~~~~k~~~l~-~~~~~-~~~~~~lif~~~~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~r~~~~~~f~~~ 95 (159)
.+.+.......+|..... .++.. ..++++++.+++++-+.+.+..++.. +.++..++|+.+.... .+ +
T Consensus 40 ~nvlv~APTGSGKTlia~lail~~l~~~~kal~i~P~raLa~q~~~~~~~~~~~g~~v~~~tGd~~~~~~-----~l--~ 112 (737)
T PRK02362 40 KNLLAAIPTASGKTLIAELAMLKAIARGGKALYIVPLRALASEKFEEFERFEELGVRVGISTGDYDSRDE-----WL--G 112 (737)
T ss_pred CcEEEECCCcchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHHHHHHHHhhcCCCEEEEEeCCcCcccc-----cc--C
Confidence 355555566677776632 22221 25678999999999999998888754 7788899998754321 11 3
Q ss_pred CeeEEEEeC
Q psy576 96 RIWILITTE 104 (159)
Q Consensus 96 ~~~vlv~t~ 104 (159)
..+|+|||+
T Consensus 113 ~~~IiV~Tp 121 (737)
T PRK02362 113 DNDIIVATS 121 (737)
T ss_pred CCCEEEECH
Confidence 467999995
No 244
>KOG1132|consensus
Probab=81.93 E-value=34 Score=29.74 Aligned_cols=80 Identities=18% Similarity=0.303 Sum_probs=49.3
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhC-------CCceEEEecCCCHHHHHHHHHHHhc--------CCeeEEEEeCCcccc
Q psy576 45 IEPPVLVFVQSKERAQELYNELIYD-------GINVDVIHSDRTQKQRDNVVRSFRT--------GRIWILITTELLGRG 109 (159)
Q Consensus 45 ~~~~~lif~~~~~~~~~l~~~l~~~-------~~~~~~~~~~~~~~~r~~~~~~f~~--------~~~~vlv~t~~~~~g 109 (159)
-...+|+|+++-...+.+.+.++.. +.+-.++ +=-+..+-.+++..|.+ |-.-.-||=...++|
T Consensus 560 Vp~G~L~FfPSY~vmdk~~tfw~~~~~we~~~~vk~l~v-EPr~k~~f~e~m~~y~~~i~~pes~ga~~~aVcRGKVSEG 638 (945)
T KOG1132|consen 560 VPYGLLIFFPSYPVMDKLITFWQNRGLWERMEKVKKLVV-EPRSKSEFTEVMSRYYNAIADPESSGAVFFAVCRGKVSEG 638 (945)
T ss_pred cccceEEeccchHHHHHHHHHHHcchHHHHhhcccCcee-ccCCccchHHHHHHHHHHhhCccccceEEEEEecccccCC
Confidence 3445999999998888886655432 2222222 21134444455555543 223466677899999
Q ss_pred cccCC--CcEEEEecCCC
Q psy576 110 IDFRT--VRLVVNYDFPS 125 (159)
Q Consensus 110 ~~i~~--~~~vi~~~~~~ 125 (159)
+|+-+ .+.||..+.|.
T Consensus 639 lDFsD~~~RaVI~tGlPy 656 (945)
T KOG1132|consen 639 LDFSDDNGRAVIITGLPY 656 (945)
T ss_pred CCccccCCceeEEecCCC
Confidence 99965 55777776663
No 245
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=81.84 E-value=4.2 Score=23.59 Aligned_cols=38 Identities=21% Similarity=0.260 Sum_probs=29.6
Q ss_pred CCCCCEEEEecchHHHHHHHHHHHhCCC-ceEEEecCCC
Q psy576 44 GIEPPVLVFVQSKERAQELYNELIYDGI-NVDVIHSDRT 81 (159)
Q Consensus 44 ~~~~~~lif~~~~~~~~~l~~~l~~~~~-~~~~~~~~~~ 81 (159)
....+++++|.+...+..++..|...|. ++..+.|++.
T Consensus 48 ~~~~~vv~~c~~~~~a~~~~~~l~~~G~~~v~~l~gG~~ 86 (89)
T cd00158 48 DKDKPIVVYCRSGNRSARAAKLLRKAGGTNVYNLEGGML 86 (89)
T ss_pred CCCCeEEEEeCCCchHHHHHHHHHHhCcccEEEecCChh
Confidence 3567899999998888999999988854 5667777753
No 246
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=81.14 E-value=3.4 Score=24.66 Aligned_cols=36 Identities=19% Similarity=0.310 Sum_probs=29.3
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhCCC-ceEEEecCC
Q psy576 45 IEPPVLVFVQSKERAQELYNELIYDGI-NVDVIHSDR 80 (159)
Q Consensus 45 ~~~~~lif~~~~~~~~~l~~~l~~~~~-~~~~~~~~~ 80 (159)
...+++++|.+-..+...+..|...|. ++..+.|++
T Consensus 55 ~~~~ivv~c~~g~~s~~a~~~l~~~G~~~v~~l~gG~ 91 (96)
T cd01444 55 RDRPVVVYCYHGNSSAQLAQALREAGFTDVRSLAGGF 91 (96)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHcCCceEEEcCCCH
Confidence 556899999998899999999988876 466777765
No 247
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=81.03 E-value=7.4 Score=24.21 Aligned_cols=36 Identities=8% Similarity=-0.006 Sum_probs=28.1
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCC
Q psy576 45 IEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDR 80 (159)
Q Consensus 45 ~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 80 (159)
...+++++|.+-..+...+..|.+.|++.....|++
T Consensus 59 ~~~~IVlyC~~G~rS~~aa~~L~~~G~~~v~~~GG~ 94 (104)
T PRK10287 59 KNDTVKLYCNAGRQSGQAKEILSEMGYTHAENAGGL 94 (104)
T ss_pred CCCeEEEEeCCChHHHHHHHHHHHcCCCeEEecCCH
Confidence 345699999998888888899988887665666764
No 248
>PRK05320 rhodanese superfamily protein; Provisional
Probab=80.65 E-value=4.7 Score=29.53 Aligned_cols=37 Identities=16% Similarity=0.139 Sum_probs=32.0
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhCCCc-eEEEecCCC
Q psy576 45 IEPPVLVFVQSKERAQELYNELIYDGIN-VDVIHSDRT 81 (159)
Q Consensus 45 ~~~~~lif~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~ 81 (159)
.+.++++||.+-..+...+.+|++.|++ +..+.|++.
T Consensus 174 kdk~IvvyC~~G~Rs~~Aa~~L~~~Gf~~V~~L~GGi~ 211 (257)
T PRK05320 174 AGKTVVSFCTGGIRCEKAAIHMQEVGIDNVYQLEGGIL 211 (257)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcCCcceEEeccCHH
Confidence 5678999999999999999999999884 778899873
No 249
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=80.52 E-value=4 Score=24.83 Aligned_cols=37 Identities=16% Similarity=0.258 Sum_probs=29.4
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhCCC-ceEEEecCCC
Q psy576 45 IEPPVLVFVQSKERAQELYNELIYDGI-NVDVIHSDRT 81 (159)
Q Consensus 45 ~~~~~lif~~~~~~~~~l~~~l~~~~~-~~~~~~~~~~ 81 (159)
...+++++|.+-..+...+..|.+.|+ ++..+.|++.
T Consensus 57 ~~~~vv~~c~~g~rs~~~~~~l~~~G~~~v~~l~GG~~ 94 (101)
T cd01528 57 PDKDIVVLCHHGGRSMQVAQWLLRQGFENVYNLQGGID 94 (101)
T ss_pred CCCeEEEEeCCCchHHHHHHHHHHcCCccEEEecCCHH
Confidence 356899999998888888888888877 4778888753
No 250
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=80.12 E-value=20 Score=26.90 Aligned_cols=123 Identities=14% Similarity=0.145 Sum_probs=59.8
Q ss_pred CCCChHHHHHHHHhcC-----C--CCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHH------------
Q psy576 29 GAGSPVQAQDETILLG-----I--EPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVV------------ 89 (159)
Q Consensus 29 ~~~~k~~~l~~~~~~~-----~--~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~------------ 89 (159)
...+|+.+|.+++... . +-.++|.+...+..+-+-.+|...+++.-.+.|..-..+....-
T Consensus 93 ~tS~KF~~L~~Li~~li~~~~~~~~~~ilIv~~~~k~ldllE~~llGk~~~~kr~sg~~l~~~~~~~~~~~~~~~~~~~~ 172 (297)
T PF11496_consen 93 YTSGKFQFLNDLIDSLIDRDRREYPLHILIVSRSGKELDLLEGLLLGKKLNYKRYSGESLYDEKHKVPKNGNTESNSSNN 172 (297)
T ss_dssp HT-HHHHHHHHHHHHH-----TTSSEEEEEEE-STHHHHHHHHHHTTSSSEEEESSS--S--S---S-------------
T ss_pred HcCchHHHHHHHHHHHHhhhcccCCceEEEEecCccHHHHHHHHHccCCeeEEecCCCCCcCccccCCcccccccccccc
Confidence 3478999998888643 2 33699999999999999999988887777777765443333222
Q ss_pred HH-Hhc--CCeeEEEEeCC-cccc----cccCCCcEEEEecCCCCH-HHHHHHHhhccCCCCcceEEEEec
Q psy576 90 RS-FRT--GRIWILITTEL-LGRG----IDFRTVRLVVNYDFPSSA-ISYIHRIGRAGRGGREGKAVTFFT 151 (159)
Q Consensus 90 ~~-f~~--~~~~vlv~t~~-~~~g----~~i~~~~~vi~~~~~~~~-~~~~q~~GR~~R~g~~g~~~~~~~ 151 (159)
.. -.+ ....|-++|+. +... ..-..++.||-+|+..+. ....|++-...|.++.-+++.++.
T Consensus 173 ~~~~~~~~~~~~i~L~ts~~l~~~~~~~~~~~~~d~IIsfD~~~d~~~p~i~~lR~~~~~~~~~PiirLv~ 243 (297)
T PF11496_consen 173 SKKKDKGSLSVWIHLITSDQLYNNKPPLLSNYNFDLIISFDPSFDTSLPSIEQLRTQNRRNRLCPIIRLVP 243 (297)
T ss_dssp ---------SEEEEEEESS---TTTS--TT-S-EEEEEE-SST--TTSHHHHHHH-------S--EEEEEE
T ss_pred cccccccccceEEEEecCccccccCCCccccCCcCEEEEecCCCCCCChHHHHHHhhcCCCCCCcEEEEee
Confidence 01 111 23445455544 3221 222356788888876432 234454433333323455555554
No 251
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=80.12 E-value=4.9 Score=24.48 Aligned_cols=36 Identities=14% Similarity=0.183 Sum_probs=28.4
Q ss_pred CCCEEEEecchHHHHHHHHHHHhCCCc-eEEEecCCC
Q psy576 46 EPPVLVFVQSKERAQELYNELIYDGIN-VDVIHSDRT 81 (159)
Q Consensus 46 ~~~~lif~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~ 81 (159)
..+++++|.+-..+...+..|...|.. +..+.|++.
T Consensus 65 ~~~vv~~c~~g~~s~~~a~~L~~~G~~~v~~l~GG~~ 101 (105)
T cd01525 65 GKIIVIVSHSHKHAALFAAFLVKCGVPRVCILDGGIN 101 (105)
T ss_pred CCeEEEEeCCCccHHHHHHHHHHcCCCCEEEEeCcHH
Confidence 567999998877788888888888874 677888863
No 252
>KOG0383|consensus
Probab=80.09 E-value=1.3 Score=36.92 Aligned_cols=78 Identities=21% Similarity=0.270 Sum_probs=60.9
Q ss_pred CChHHHHHHHHhc--CCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhc---CCeeEEEEeCC
Q psy576 31 GSPVQAQDETILL--GIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRT---GRIWILITTEL 105 (159)
Q Consensus 31 ~~k~~~l~~~~~~--~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~---~~~~vlv~t~~ 105 (159)
.+|...|...+.. ..+++++||..-....+-+..++...+ ....+.|.....+|...++.|+. .....|.+|..
T Consensus 614 ~~k~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra 692 (696)
T KOG0383|consen 614 SGKLTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRA 692 (696)
T ss_pred HHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccceEEEeeccc
Confidence 3455555555543 356799999988888888888887776 77788999999999999999985 35778899998
Q ss_pred cccc
Q psy576 106 LGRG 109 (159)
Q Consensus 106 ~~~g 109 (159)
.+.|
T Consensus 693 ~g~g 696 (696)
T KOG0383|consen 693 GGLG 696 (696)
T ss_pred ccCC
Confidence 8765
No 253
>PF01751 Toprim: Toprim domain; InterPro: IPR006171 This is a conserved region from DNA primase. This corresponds to the Toprim (topoisomerase-primase) domain common to DnaG primases, topoisomerases, OLD family nucleases and RecR/M DNA repair proteins []. Both DnaG motifs IV and V are present in the alignment, the DxD (V) motif may be involved in Mg2+ binding and mutations to the conserved glutamate (IV) completely abolish DnaG type primase activity. DNA primase 2.7.7.6 from EC is a nucleotidyltransferase it synthesizes the oligoribonucleotide primers required for DNA replication on the lagging strand of the replication fork; it can also prime the leading stand and has been implicated in cell division []. This family also includes the atypical archaeal A subunit from type II DNA topoisomerases []. Type II DNA topoisomerases catalyse the relaxation of DNA supercoiling by causing transient double strand breaks.; PDB: 2ZJT_A 3IG0_A 3M4I_A 3NUH_B 1GKU_B 1GL9_C 3PWT_A 1CY4_A 1ECL_A 1CY7_A ....
Probab=79.76 E-value=3.6 Score=25.18 Aligned_cols=64 Identities=14% Similarity=0.062 Sum_probs=40.9
Q ss_pred EEEEecchHHHHHHHHHHHhCCCceEEEecCCC-----HH-------HHHHHHHHHhcCCeeEEEEeCCccccccc
Q psy576 49 VLVFVQSKERAQELYNELIYDGINVDVIHSDRT-----QK-------QRDNVVRSFRTGRIWILITTELLGRGIDF 112 (159)
Q Consensus 49 ~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-----~~-------~r~~~~~~f~~~~~~vlv~t~~~~~g~~i 112 (159)
.|+.+...+.+..+.+.+......+....|-+- .. ...+.+.....+-..|+++|+.-.+|-.+
T Consensus 1 ~liIvE~ps~a~~i~~~l~~~~~~v~~~~Ghl~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~iiiatD~D~EGe~I 76 (100)
T PF01751_consen 1 ELIIVEKPSDAKAIAKALGGEEYIVIATSGHLLELAKPEDYDPKDKKKQIKNLKKLLKKADEIIIATDPDREGELI 76 (100)
T ss_dssp EEEEESSHHHHHHHHHHSSTTTEEEEEESSSSEESTTSSHHHCHTTHHHHHHHHHHHHSCSEEEEEC-SSHHHHHH
T ss_pred CEEEEeCHHHHHHHHHHcCCCCEEEEEeCCcccccccccccccccccccchhhHHHhhhccEeeecCCCChHHHHH
Confidence 378899999999999988744444555555431 11 11344444444566799999998888665
No 254
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=79.55 E-value=2.4 Score=25.67 Aligned_cols=36 Identities=19% Similarity=0.147 Sum_probs=28.0
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhCCCc-eEEEecCC
Q psy576 45 IEPPVLVFVQSKERAQELYNELIYDGIN-VDVIHSDR 80 (159)
Q Consensus 45 ~~~~~lif~~~~~~~~~l~~~l~~~~~~-~~~~~~~~ 80 (159)
...++++||.+-..+...+..|...|+. +..+.|++
T Consensus 60 ~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~l~Gg~ 96 (103)
T cd01447 60 EDKPFVFYCASGWRSALAGKTLQDMGLKPVYNIEGGF 96 (103)
T ss_pred CCCeEEEEcCCCCcHHHHHHHHHHcChHHhEeecCcH
Confidence 4568999998877777888888888765 77777765
No 255
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=79.42 E-value=3.2 Score=25.33 Aligned_cols=36 Identities=8% Similarity=0.067 Sum_probs=28.4
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhCCCc-eEEEecCC
Q psy576 45 IEPPVLVFVQSKERAQELYNELIYDGIN-VDVIHSDR 80 (159)
Q Consensus 45 ~~~~~lif~~~~~~~~~l~~~l~~~~~~-~~~~~~~~ 80 (159)
...++++||.+-..+......|...|++ +..+.|++
T Consensus 65 ~~~~ivv~c~~g~~s~~~~~~l~~~G~~~v~~~~Gg~ 101 (106)
T cd01519 65 KDKELIFYCKAGVRSKAAAELARSLGYENVGNYPGSW 101 (106)
T ss_pred CCCeEEEECCCcHHHHHHHHHHHHcCCccceecCCcH
Confidence 4568999999988888888888888874 66667765
No 256
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=79.26 E-value=13 Score=30.08 Aligned_cols=93 Identities=10% Similarity=0.041 Sum_probs=63.7
Q ss_pred eeeeecCCCCChHHHHHHH----HhcCCCCCEEEEecchHHHHHHHHHHHhC----CCceEEEecCCCHHHHHHHHHHHh
Q psy576 22 RMYRETEGAGSPVQAQDET----ILLGIEPPVLVFVQSKERAQELYNELIYD----GINVDVIHSDRTQKQRDNVVRSFR 93 (159)
Q Consensus 22 ~~~~~~~~~~~k~~~l~~~----~~~~~~~~~lif~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~ 93 (159)
+..+.++..-+|.-+-.-. +.. .++++|+..+|+.-+..-+..+.+- ...+..++|..++++|...+.
T Consensus 31 NtLvvlPTGLGKT~IA~~V~~~~l~~-~~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~ltGev~p~~R~~~w~--- 106 (542)
T COG1111 31 NTLVVLPTGLGKTFIAAMVIANRLRW-FGGKVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAALTGEVRPEEREELWA--- 106 (542)
T ss_pred CeEEEecCCccHHHHHHHHHHHHHHh-cCCeEEEecCCchHHHHHHHHHHHHhCCChhheeeecCCCChHHHHHHHh---
Confidence 6667777767776653322 233 3348999999998777777766543 346889999999999987665
Q ss_pred cCCeeEEEEeCC------cccccccCCCcEEEE
Q psy576 94 TGRIWILITTEL------LGRGIDFRTVRLVVN 120 (159)
Q Consensus 94 ~~~~~vlv~t~~------~~~g~~i~~~~~vi~ 120 (159)
+.+|+++|+- .+--+|+.++.++|.
T Consensus 107 --~~kVfvaTPQvveNDl~~Grid~~dv~~lif 137 (542)
T COG1111 107 --KKKVFVATPQVVENDLKAGRIDLDDVSLLIF 137 (542)
T ss_pred --hCCEEEeccHHHHhHHhcCccChHHceEEEe
Confidence 3458888852 333457777777775
No 257
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=79.07 E-value=10 Score=23.43 Aligned_cols=36 Identities=8% Similarity=0.012 Sum_probs=27.6
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCC
Q psy576 45 IEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDR 80 (159)
Q Consensus 45 ~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 80 (159)
.+.+++++|.+-..+...+..|.+.|+.....-|++
T Consensus 57 ~~~~vvlyC~~G~rS~~aa~~L~~~G~~~v~~~GG~ 92 (101)
T TIGR02981 57 KNDTVKLYCNAGRQSGMAKDILLDMGYTHAENAGGI 92 (101)
T ss_pred CCCeEEEEeCCCHHHHHHHHHHHHcCCCeEEecCCH
Confidence 445788999998888888999988887644445664
No 258
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=78.59 E-value=5.5 Score=25.10 Aligned_cols=36 Identities=22% Similarity=0.217 Sum_probs=28.0
Q ss_pred CCCCEEEEecc-hHHHHHHHHHHHhCCCc-eEEEecCC
Q psy576 45 IEPPVLVFVQS-KERAQELYNELIYDGIN-VDVIHSDR 80 (159)
Q Consensus 45 ~~~~~lif~~~-~~~~~~l~~~l~~~~~~-~~~~~~~~ 80 (159)
...++++||.+ -..+...+..|...|++ +..+.|++
T Consensus 78 ~~~~vv~~c~~g~~~a~~~~~~l~~~G~~~v~~l~GG~ 115 (122)
T cd01448 78 NDDTVVVYDDGGGFFAARAWWTLRYFGHENVRVLDGGL 115 (122)
T ss_pred CCCEEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCH
Confidence 45679999988 47787888888888764 77777876
No 259
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=78.40 E-value=9.7 Score=34.99 Aligned_cols=70 Identities=24% Similarity=0.278 Sum_probs=48.8
Q ss_pred CCEEEEecchHHHHHHHHHHHh----------------CCCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCC-----
Q psy576 47 PPVLVFVQSKERAQELYNELIY----------------DGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTEL----- 105 (159)
Q Consensus 47 ~~~lif~~~~~~~~~l~~~l~~----------------~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~----- 105 (159)
.++|++++++.-+..+.+.|+. .++.+...||+.+..+|.+.++ ...+|||+|+-
T Consensus 38 ~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V~vrtGDt~~~eR~rll~----~ppdILVTTPEsL~~L 113 (1490)
T PRK09751 38 SRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRVGIRTGDTPAQERSKLTR----NPPDILITTPESLYLM 113 (1490)
T ss_pred CEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEEEEEECCCCHHHHHHHhc----CCCCEEEecHHHHHHH
Confidence 4699999999988888776642 2567889999999988765333 45679999853
Q ss_pred cc-cc-cccCCCcEEEE
Q psy576 106 LG-RG-IDFRTVRLVVN 120 (159)
Q Consensus 106 ~~-~g-~~i~~~~~vi~ 120 (159)
+. .+ ..+.++++||.
T Consensus 114 Ltsk~r~~L~~Vr~VIV 130 (1490)
T PRK09751 114 LTSRARETLRGVETVII 130 (1490)
T ss_pred HhhhhhhhhccCCEEEE
Confidence 11 11 24566777664
No 260
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=78.30 E-value=13 Score=28.78 Aligned_cols=108 Identities=14% Similarity=0.158 Sum_probs=61.0
Q ss_pred HHHHHHHhcCCCCCEEEEec---------chHHHHHHHHHHHhCCCceE--EEecCCCHHH-HHHHHHHHhcCCeeEEEE
Q psy576 35 QAQDETILLGIEPPVLVFVQ---------SKERAQELYNELIYDGINVD--VIHSDRTQKQ-RDNVVRSFRTGRIWILIT 102 (159)
Q Consensus 35 ~~l~~~~~~~~~~~~lif~~---------~~~~~~~l~~~l~~~~~~~~--~~~~~~~~~~-r~~~~~~f~~~~~~vlv~ 102 (159)
+.|.+.+.. ...+.+|+|+ |.++...+.+++.++++.+. -+|.++--.. +.-........--...|+
T Consensus 148 ~~LE~~~~~-~~vkl~iLCnPHNP~Grvwt~eeL~~i~elc~kh~v~VISDEIHaDlv~~g~~h~~~a~ls~~~a~~~it 226 (388)
T COG1168 148 DALEKAFVD-ERVKLFILCNPHNPTGRVWTKEELRKIAELCLRHGVRVISDEIHADLVLGGHKHIPFASLSERFADNSIT 226 (388)
T ss_pred HHHHHHHhc-CCccEEEEeCCCCCCCccccHHHHHHHHHHHHHcCCEEEeecccccccccCCCccchhhcChhhhcceEE
Confidence 334444443 3347888887 77889999999888876543 4566543222 111111122222233444
Q ss_pred eCCcccccccCCCcEEEE-ecCCCCHHHHHHHHhhccCCCCc
Q psy576 103 TELLGRGIDFRTVRLVVN-YDFPSSAISYIHRIGRAGRGGRE 143 (159)
Q Consensus 103 t~~~~~g~~i~~~~~vi~-~~~~~~~~~~~q~~GR~~R~g~~ 143 (159)
......++|++.+.+... ...+...+.|..++-+.++.|.+
T Consensus 227 ~~saSKtFNlaGL~~a~~Ii~n~~lr~~~~~~l~~~~~~~~n 268 (388)
T COG1168 227 LTSASKTFNLAGLKCAYIIISNRELRAKFLKRLKRNGLHGPS 268 (388)
T ss_pred EeeccccccchhhhheeEEecCHHHHHHHHHHHHHhcCCCCc
Confidence 445566889987664332 22334447788888777766543
No 261
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=78.27 E-value=4.4 Score=25.99 Aligned_cols=37 Identities=24% Similarity=0.337 Sum_probs=28.6
Q ss_pred CCCCEEEEec-chHHHHHHHHHHHhCCCceEEEecCCC
Q psy576 45 IEPPVLVFVQ-SKERAQELYNELIYDGINVDVIHSDRT 81 (159)
Q Consensus 45 ~~~~~lif~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~ 81 (159)
+..++++||. +-..+...+..|+..|+++..+.|++.
T Consensus 85 ~~~~vvvyC~~~G~rs~~a~~~L~~~G~~v~~L~GG~~ 122 (128)
T cd01520 85 RDPKLLIYCARGGMRSQSLAWLLESLGIDVPLLEGGYK 122 (128)
T ss_pred CCCeEEEEeCCCCccHHHHHHHHHHcCCceeEeCCcHH
Confidence 5568999996 455666777778777888888999864
No 262
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=77.99 E-value=14 Score=22.93 Aligned_cols=77 Identities=23% Similarity=0.213 Sum_probs=48.3
Q ss_pred CChHHHHHHHHh----cCCCCCEEEEecchHHHHHHHHHHHhC---CCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEe
Q psy576 31 GSPVQAQDETIL----LGIEPPVLVFVQSKERAQELYNELIYD---GINVDVIHSDRTQKQRDNVVRSFRTGRIWILITT 103 (159)
Q Consensus 31 ~~k~~~l~~~~~----~~~~~~~lif~~~~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t 103 (159)
.+|...+...+. .....+++++|++...+....+.+... +..+..+++........ ........++++|
T Consensus 11 ~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~i~t 86 (144)
T cd00046 11 SGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQE----KLLSGKTDIVVGT 86 (144)
T ss_pred CchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHH----HHhcCCCCEEEEC
Confidence 456555444433 224578999999999888887776544 36777888865554433 2233567788888
Q ss_pred CC-cccccc
Q psy576 104 EL-LGRGID 111 (159)
Q Consensus 104 ~~-~~~g~~ 111 (159)
.. +.+...
T Consensus 87 ~~~~~~~~~ 95 (144)
T cd00046 87 PGRLLDELE 95 (144)
T ss_pred cHHHHHHHH
Confidence 65 444443
No 263
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=75.92 E-value=23 Score=30.91 Aligned_cols=71 Identities=11% Similarity=-0.028 Sum_probs=51.3
Q ss_pred CCChHHH--HHHHHhcCCCCCEEEEecchHHHHHHHHHH----HhCCCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEe
Q psy576 30 AGSPVQA--QDETILLGIEPPVLVFVQSKERAQELYNEL----IYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITT 103 (159)
Q Consensus 30 ~~~k~~~--l~~~~~~~~~~~~lif~~~~~~~~~l~~~l----~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t 103 (159)
.++|... +...+....+.++-|.+++.--|..=++++ ...|+.+.++.+.+++.+|..++. .+|+.+|
T Consensus 105 GEGKTLvA~l~a~l~al~G~~VhvvT~ndyLA~RD~e~m~~l~~~lGl~v~~i~~~~~~~err~~Y~------~dI~YGT 178 (913)
T PRK13103 105 GEGKTLVGTLAVYLNALSGKGVHVVTVNDYLARRDANWMRPLYEFLGLSVGIVTPFQPPEEKRAAYA------ADITYGT 178 (913)
T ss_pred CCCChHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHhcccCCEEEEECCCCCHHHHHHHhc------CCEEEEc
Confidence 3455444 455556667788889999876666555544 445899999999999999998776 6788887
Q ss_pred CCc
Q psy576 104 ELL 106 (159)
Q Consensus 104 ~~~ 106 (159)
...
T Consensus 179 ~~e 181 (913)
T PRK13103 179 NNE 181 (913)
T ss_pred ccc
Confidence 643
No 264
>KOG0345|consensus
Probab=75.77 E-value=33 Score=27.68 Aligned_cols=70 Identities=19% Similarity=0.371 Sum_probs=49.7
Q ss_pred CEEEEecchHHHHHHHHHHHh-----CCCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeC-----Cc---ccccccCC
Q psy576 48 PVLVFVQSKERAQELYNELIY-----DGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTE-----LL---GRGIDFRT 114 (159)
Q Consensus 48 ~~lif~~~~~~~~~l~~~l~~-----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~-----~~---~~g~~i~~ 114 (159)
-.+|..+|++-+..|.+-+.. .++++..+-|+.+.+ +-++.|++....|||+|+ ++ ..+++..+
T Consensus 81 galIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~---~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rs 157 (567)
T KOG0345|consen 81 GALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVE---EDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRS 157 (567)
T ss_pred eEEEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHH---HHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccc
Confidence 478999999988877665432 266788889986554 457788888899999997 22 23455556
Q ss_pred CcEEEE
Q psy576 115 VRLVVN 120 (159)
Q Consensus 115 ~~~vi~ 120 (159)
+.++|.
T Consensus 158 Le~LVL 163 (567)
T KOG0345|consen 158 LEILVL 163 (567)
T ss_pred cceEEe
Confidence 776663
No 265
>KOG1180|consensus
Probab=74.98 E-value=29 Score=28.67 Aligned_cols=75 Identities=13% Similarity=0.164 Sum_probs=53.6
Q ss_pred CCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCccccc-----ccCCCcEEEE
Q psy576 46 EPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGRGI-----DFRTVRLVVN 120 (159)
Q Consensus 46 ~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~g~-----~i~~~~~vi~ 120 (159)
..++.||+.|.......++-+...+++++-.+..+-.+ .++..+...+...+++.+.+-.-+ .++.+.+||.
T Consensus 115 e~k~~iFa~TraeWm~ta~gC~~q~ipvVT~Y~TLGee---al~hsl~Et~~~~i~T~~~LL~kl~~~l~~~~~vk~II~ 191 (678)
T KOG1180|consen 115 ETKIAIFAETRAEWMITAQGCFSQNIPVVTAYATLGEE---ALIHSLNETESTAIFTDSELLPKLKAPLKQAKTVKHIIY 191 (678)
T ss_pred CCeEEEEecchHHHHHHHHHHHhcCCeEEEEehhcChh---hhhhhhccccceEEEeCHHHHHHHHHHHhccCceeEEEE
Confidence 34599999999999999998888899988888776543 356666776777777665433222 3356777887
Q ss_pred ecC
Q psy576 121 YDF 123 (159)
Q Consensus 121 ~~~ 123 (159)
+++
T Consensus 192 ~d~ 194 (678)
T KOG1180|consen 192 FDP 194 (678)
T ss_pred ecC
Confidence 764
No 266
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=72.67 E-value=11 Score=27.61 Aligned_cols=51 Identities=10% Similarity=0.185 Sum_probs=34.9
Q ss_pred ccceeeeecCCCCChHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHhCCC
Q psy576 19 NLARMYRETEGAGSPVQAQDETILLGIEPPVLVFVQSKERAQELYNELIYDGI 71 (159)
Q Consensus 19 ~i~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~ 71 (159)
++...+..+.+.-+-++.+.+.+. +++.+++|+++.++++++.+.|++.++
T Consensus 163 ~vDav~LDmp~PW~~le~~~~~Lk--pgg~~~~y~P~veQv~kt~~~l~~~g~ 213 (256)
T COG2519 163 DVDAVFLDLPDPWNVLEHVSDALK--PGGVVVVYSPTVEQVEKTVEALRERGF 213 (256)
T ss_pred ccCEEEEcCCChHHHHHHHHHHhC--CCcEEEEEcCCHHHHHHHHHHHHhcCc
Confidence 334444444444444555555555 457899999999999999999987743
No 267
>PLN02160 thiosulfate sulfurtransferase
Probab=72.21 E-value=7.9 Score=25.27 Aligned_cols=36 Identities=25% Similarity=0.177 Sum_probs=29.6
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhCCCc-eEEEecCC
Q psy576 45 IEPPVLVFVQSKERAQELYNELIYDGIN-VDVIHSDR 80 (159)
Q Consensus 45 ~~~~~lif~~~~~~~~~l~~~l~~~~~~-~~~~~~~~ 80 (159)
.+.+++++|.+-..+...+..|.+.|+. +..+.|++
T Consensus 80 ~~~~IivyC~sG~RS~~Aa~~L~~~G~~~v~~l~GG~ 116 (136)
T PLN02160 80 PADDILVGCQSGARSLKATTELVAAGYKKVRNKGGGY 116 (136)
T ss_pred CCCcEEEECCCcHHHHHHHHHHHHcCCCCeeecCCcH
Confidence 4568999999999999999999888874 66677775
No 268
>KOG0340|consensus
Probab=72.11 E-value=17 Score=28.17 Aligned_cols=52 Identities=19% Similarity=0.260 Sum_probs=39.0
Q ss_pred CEEEEecchHHHHHHHHHHHhC----CCceEEEecCCCHHHHHHHHHHH-hcCCeeEEEEeC
Q psy576 48 PVLVFVQSKERAQELYNELIYD----GINVDVIHSDRTQKQRDNVVRSF-RTGRIWILITTE 104 (159)
Q Consensus 48 ~~lif~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f-~~~~~~vlv~t~ 104 (159)
-++||++|++-+..+++.+... +.++..+.|+++.- .+.. -.....++|+|+
T Consensus 77 FalvlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i-----~qa~~L~~rPHvVvatP 133 (442)
T KOG0340|consen 77 FALVLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMI-----MQAAILSDRPHVVVATP 133 (442)
T ss_pred eEEEecchHHHHHHHHHHHHHhcccccceEEEEEccHHHh-----hhhhhcccCCCeEecCc
Confidence 4899999999999999988654 66889999997653 2222 235577888875
No 269
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=72.00 E-value=19 Score=23.72 Aligned_cols=36 Identities=14% Similarity=-0.022 Sum_probs=29.4
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhCCC-ceEEEecCC
Q psy576 45 IEPPVLVFVQSKERAQELYNELIYDGI-NVDVIHSDR 80 (159)
Q Consensus 45 ~~~~~lif~~~~~~~~~l~~~l~~~~~-~~~~~~~~~ 80 (159)
...+++++|.+-..+...+..|...+. ++..+.|++
T Consensus 48 ~~~~vVv~c~~g~~a~~aa~~L~~~G~~~v~~L~GG~ 84 (145)
T cd01535 48 AAERYVLTCGSSLLARFAAADLAALTVKPVFVLEGGT 84 (145)
T ss_pred CCCCEEEEeCCChHHHHHHHHHHHcCCcCeEEecCcH
Confidence 456899999998888888888887766 788899985
No 270
>PRK01415 hypothetical protein; Validated
Probab=71.77 E-value=10 Score=27.68 Aligned_cols=37 Identities=11% Similarity=-0.013 Sum_probs=31.4
Q ss_pred CCCCCEEEEecchHHHHHHHHHHHhCCCc-eEEEecCC
Q psy576 44 GIEPPVLVFVQSKERAQELYNELIYDGIN-VDVIHSDR 80 (159)
Q Consensus 44 ~~~~~~lif~~~~~~~~~l~~~l~~~~~~-~~~~~~~~ 80 (159)
..++++++||.+--.++..+.+|++.|+. +..+.|++
T Consensus 169 ~k~k~Iv~yCtgGiRs~kAa~~L~~~Gf~~Vy~L~GGi 206 (247)
T PRK01415 169 LKGKKIAMVCTGGIRCEKSTSLLKSIGYDEVYHLKGGI 206 (247)
T ss_pred cCCCeEEEECCCChHHHHHHHHHHHcCCCcEEEechHH
Confidence 35568999999999999999999999885 77788875
No 271
>PRK00254 ski2-like helicase; Provisional
Probab=71.57 E-value=27 Score=29.62 Aligned_cols=77 Identities=18% Similarity=0.130 Sum_probs=51.4
Q ss_pred ceeeeecCCCCChHHHH-HHHHhc--CCCCCEEEEecchHHHHHHHHHHHh---CCCceEEEecCCCHHHHHHHHHHHhc
Q psy576 21 ARMYRETEGAGSPVQAQ-DETILL--GIEPPVLVFVQSKERAQELYNELIY---DGINVDVIHSDRTQKQRDNVVRSFRT 94 (159)
Q Consensus 21 ~~~~~~~~~~~~k~~~l-~~~~~~--~~~~~~lif~~~~~~~~~l~~~l~~---~~~~~~~~~~~~~~~~r~~~~~~f~~ 94 (159)
.+.+.......+|.... ..++.. ..+.++|+.++++.-+.+.++.+.. .+.++..++|+.+...+ . .
T Consensus 40 ~nvlv~apTGsGKT~~~~l~il~~l~~~~~~~l~l~P~~aLa~q~~~~~~~~~~~g~~v~~~~Gd~~~~~~-----~--~ 112 (720)
T PRK00254 40 KNLVLAIPTASGKTLVAEIVMVNKLLREGGKAVYLVPLKALAEEKYREFKDWEKLGLRVAMTTGDYDSTDE-----W--L 112 (720)
T ss_pred CcEEEECCCCcHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHHHHHHHHHHhhcCCEEEEEeCCCCCchh-----h--h
Confidence 35555556667777653 222221 2456899999999999988877753 37788999998765421 1 1
Q ss_pred CCeeEEEEeC
Q psy576 95 GRIWILITTE 104 (159)
Q Consensus 95 ~~~~vlv~t~ 104 (159)
++.+|+|+|+
T Consensus 113 ~~~~IiV~Tp 122 (720)
T PRK00254 113 GKYDIIIATA 122 (720)
T ss_pred ccCCEEEEcH
Confidence 4567999994
No 272
>KOG0342|consensus
Probab=71.40 E-value=14 Score=29.78 Aligned_cols=53 Identities=21% Similarity=0.253 Sum_probs=37.1
Q ss_pred CEEEEecchHHHHHHHHHHHh----C-CCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeC
Q psy576 48 PVLVFVQSKERAQELYNELIY----D-GINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTE 104 (159)
Q Consensus 48 ~~lif~~~~~~~~~l~~~l~~----~-~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~ 104 (159)
.++|.|+|++-+..++..+++ + ++.+..+-|+.... .-.+.+.+ -+.+||||+
T Consensus 156 ~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~---~e~~kl~k-~~niliATP 213 (543)
T KOG0342|consen 156 GVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFS---VEADKLVK-GCNILIATP 213 (543)
T ss_pred eEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccch---HHHHHhhc-cccEEEeCC
Confidence 589999999988877665543 3 66777888875432 23344555 788999997
No 273
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=71.11 E-value=7.7 Score=24.45 Aligned_cols=37 Identities=19% Similarity=0.219 Sum_probs=29.3
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhCCCc-eEEEecCCC
Q psy576 45 IEPPVLVFVQSKERAQELYNELIYDGIN-VDVIHSDRT 81 (159)
Q Consensus 45 ~~~~~lif~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~ 81 (159)
...+++++|.+-..+...+..|...|+. +..+.|++.
T Consensus 63 ~~~~ivv~C~~G~rs~~aa~~L~~~G~~~v~~l~gG~~ 100 (117)
T cd01522 63 KDRPVLLLCRSGNRSIAAAEAAAQAGFTNVYNVLEGFE 100 (117)
T ss_pred CCCeEEEEcCCCccHHHHHHHHHHCCCCeEEECcCcee
Confidence 5667999999988888888999888874 556777764
No 274
>KOG0335|consensus
Probab=70.76 E-value=14 Score=29.69 Aligned_cols=54 Identities=22% Similarity=0.284 Sum_probs=40.3
Q ss_pred CCEEEEecchHHHHHHHHHHHhC----CCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeC
Q psy576 47 PPVLVFVQSKERAQELYNELIYD----GINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTE 104 (159)
Q Consensus 47 ~~~lif~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~ 104 (159)
..++|..+|++-+..++...++. .+.+...+|+.+... -..+..+.++|+|||.
T Consensus 153 P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~----q~~~~~~gcdIlvaTp 210 (482)
T KOG0335|consen 153 PRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGA----QLRFIKRGCDILVATP 210 (482)
T ss_pred CceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhh----hhhhhccCccEEEecC
Confidence 46999999999999999987664 567888899843322 2234456788999996
No 275
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=70.25 E-value=65 Score=27.11 Aligned_cols=103 Identities=18% Similarity=0.224 Sum_probs=65.9
Q ss_pred CChHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHhC-CCc-eEEE--------------------ecC-----CCHH
Q psy576 31 GSPVQAQDETILLGIEPPVLVFVQSKERAQELYNELIYD-GIN-VDVI--------------------HSD-----RTQK 83 (159)
Q Consensus 31 ~~k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~-~~~-~~~~--------------------~~~-----~~~~ 83 (159)
..|...+..+... .+.++||.+++...+..++.-|... +.+ +.++ +.. --..
T Consensus 43 s~ka~lia~l~~~-~~r~vLIVt~~~~~A~~l~~dL~~~~~~~~v~~f~s~~~~~~~~~~~P~~d~~~~~~~~~~~~~~~ 121 (652)
T PRK05298 43 SGKTFTMANVIAR-LQRPTLVLAHNKTLAAQLYSEFKEFFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINEEIER 121 (652)
T ss_pred cHHHHHHHHHHHH-hCCCEEEEECCHHHHHHHHHHHHHhcCCCeEEEeCChhhccCccccCCCCcccccccCCCChHHHH
Confidence 5777777777765 4578999999999999999988654 222 4333 111 1145
Q ss_pred HHHHHHHHHhcCCeeEEEEeCCcccccccCC----CcEEEEecCCCCHHHHHHHH
Q psy576 84 QRDNVVRSFRTGRIWILITTELLGRGIDFRT----VRLVVNYDFPSSAISYIHRI 134 (159)
Q Consensus 84 ~r~~~~~~f~~~~~~vlv~t~~~~~g~~i~~----~~~vi~~~~~~~~~~~~q~~ 134 (159)
.|..++..+..++..|+|+|-.+..++--|. ...-+..+...+...+..+.
T Consensus 122 ~R~~~l~~L~~~~~~ivv~s~~al~~~~~~~~~~~~~~~l~~G~~i~~~~l~~~L 176 (652)
T PRK05298 122 LRHSATKSLLERRDVIVVASVSCIYGLGSPEEYLKMVLSLRVGQEIDRRELLRRL 176 (652)
T ss_pred HHHHHHHHHHhCCCEEEEEcHHHhcCCCCHHHHHhceEEEeCCCCcCHHHHHHHH
Confidence 5677888887776667777744446665543 23344456566666655543
No 276
>COG1204 Superfamily II helicase [General function prediction only]
Probab=69.90 E-value=26 Score=30.10 Aligned_cols=77 Identities=19% Similarity=0.147 Sum_probs=52.6
Q ss_pred ceeeeecCCCCChHHHH-HHHHhcC--CCCCEEEEecchHHHHHHHHHHH---hCCCceEEEecCCCHHHHHHHHHHHhc
Q psy576 21 ARMYRETEGAGSPVQAQ-DETILLG--IEPPVLVFVQSKERAQELYNELI---YDGINVDVIHSDRTQKQRDNVVRSFRT 94 (159)
Q Consensus 21 ~~~~~~~~~~~~k~~~l-~~~~~~~--~~~~~lif~~~~~~~~~l~~~l~---~~~~~~~~~~~~~~~~~r~~~~~~f~~ 94 (159)
.+.........+|..+- ..++... .+.+++-.|+.+.-+.+.++.++ ..|+++...+|+++.... .-
T Consensus 48 ~N~li~aPTgsGKTlIA~lai~~~l~~~~~k~vYivPlkALa~Ek~~~~~~~~~~GirV~~~TgD~~~~~~-------~l 120 (766)
T COG1204 48 ENVLISAPTGSGKTLIALLAILSTLLEGGGKVVYIVPLKALAEEKYEEFSRLEELGIRVGISTGDYDLDDE-------RL 120 (766)
T ss_pred CcEEEEcCCCCchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHHHHHhhhHHhcCCEEEEecCCcccchh-------hh
Confidence 34445555556776662 2333222 25689999999999999998887 559999999999864321 11
Q ss_pred CCeeEEEEeC
Q psy576 95 GRIWILITTE 104 (159)
Q Consensus 95 ~~~~vlv~t~ 104 (159)
.+.+|+|+|.
T Consensus 121 ~~~~ViVtT~ 130 (766)
T COG1204 121 ARYDVIVTTP 130 (766)
T ss_pred ccCCEEEEch
Confidence 3577999984
No 277
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=69.85 E-value=4.9 Score=24.38 Aligned_cols=43 Identities=21% Similarity=0.302 Sum_probs=24.0
Q ss_pred HHHHHhCCCceEEE----ecCCCHHHHHHHHHHHhcCCeeEEEEeCC
Q psy576 63 YNELIYDGINVDVI----HSDRTQKQRDNVVRSFRTGRIWILITTEL 105 (159)
Q Consensus 63 ~~~l~~~~~~~~~~----~~~~~~~~r~~~~~~f~~~~~~vlv~t~~ 105 (159)
+++|++.++++..+ +.+-.+.-+..+.+.+++++++++|.|..
T Consensus 23 a~~L~~~Gi~~~~v~~~~~~~~~~~g~~~i~~~i~~~~IdlVIn~~~ 69 (95)
T PF02142_consen 23 AKFLKEHGIEVTEVVNKIGEGESPDGRVQIMDLIKNGKIDLVINTPY 69 (95)
T ss_dssp HHHHHHTT--EEECCEEHSTG-GGTHCHHHHHHHHTTSEEEEEEE--
T ss_pred HHHHHHcCCCceeeeeecccCccCCchhHHHHHHHcCCeEEEEEeCC
Confidence 45667777773333 22212233346899999999988887754
No 278
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=68.20 E-value=11 Score=23.16 Aligned_cols=36 Identities=22% Similarity=0.326 Sum_probs=28.4
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhCCCc-eEEEecCC
Q psy576 45 IEPPVLVFVQSKERAQELYNELIYDGIN-VDVIHSDR 80 (159)
Q Consensus 45 ~~~~~lif~~~~~~~~~l~~~l~~~~~~-~~~~~~~~ 80 (159)
...+++++|.+-..+...+..|+..|+. +..+.|++
T Consensus 57 ~~~~ivv~c~~g~~s~~a~~~L~~~G~~~v~~l~GG~ 93 (108)
T PRK00162 57 FDTPVMVMCYHGNSSQGAAQYLLQQGFDVVYSIDGGF 93 (108)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHHCCchheEEecCCH
Confidence 4567889998877788888888888774 67788876
No 279
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=66.77 E-value=40 Score=25.93 Aligned_cols=49 Identities=18% Similarity=0.230 Sum_probs=36.8
Q ss_pred CCCCEEEEec-chHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhc
Q psy576 45 IEPPVLVFVQ-SKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRT 94 (159)
Q Consensus 45 ~~~~~lif~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 94 (159)
++.++++||. +-..+..++.+|...|+++..+.|++.. .+...++.+..
T Consensus 87 ~~~~ivvyC~rgG~RS~~aa~~L~~~G~~v~~L~GG~~a-wr~~~~~~~~~ 136 (345)
T PRK11784 87 ANPRGLLYCWRGGLRSGSVQQWLKEAGIDVPRLEGGYKA-YRRFVIDTLEE 136 (345)
T ss_pred CCCeEEEEECCCChHHHHHHHHHHHcCCCcEEEcCCHHH-HHHhhHHHHhh
Confidence 5668999995 5566778888888889888899998744 56666666653
No 280
>smart00493 TOPRIM topoisomerases, DnaG-type primases, OLD family nucleases and RecR proteins.
Probab=66.58 E-value=21 Score=20.15 Aligned_cols=60 Identities=18% Similarity=0.184 Sum_probs=36.2
Q ss_pred EEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCccccc
Q psy576 49 VLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGRGI 110 (159)
Q Consensus 49 ~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~g~ 110 (159)
.++.|.....+..+.+.... +..+....|.....+....+..+... ..|+++++.-..|-
T Consensus 2 ~l~ivEg~~da~~~~~~~~~-~~~~~~~~G~~~~~~~~~~l~~~~~~-~~Iii~~D~D~~G~ 61 (76)
T smart00493 2 VLIIVEGPADAIALEKAGGF-GGNVVALGGHLLKKEIIKLLKRLAKK-KEVILATDPDREGE 61 (76)
T ss_pred EEEEEcCHHHHHHHHHhcCC-CEEEEEEeeeecHHHHHHHHHHHhcC-CEEEEEcCCChhHH
Confidence 47888888888888886532 22344444444344455555555443 56888887655553
No 281
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=66.51 E-value=31 Score=27.95 Aligned_cols=71 Identities=14% Similarity=0.232 Sum_probs=44.4
Q ss_pred CCCEEEEecchHHHHHHHHHHHhC----CCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeC-----Cc-ccccccCCC
Q psy576 46 EPPVLVFVQSKERAQELYNELIYD----GINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTE-----LL-GRGIDFRTV 115 (159)
Q Consensus 46 ~~~~lif~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~-----~~-~~g~~i~~~ 115 (159)
+..+||.+++++-+..+.+.++.. ++.+..+.|+.+..+.. ..+.. ...|+|+|+ .+ ..++++..+
T Consensus 196 ~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~---~~l~~-~~~IiV~TPgrL~~~l~~~~~~l~~v 271 (518)
T PLN00206 196 NPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQL---YRIQQ-GVELIVGTPGRLIDLLSKHDIELDNV 271 (518)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHH---HHhcC-CCCEEEECHHHHHHHHHcCCccchhe
Confidence 346999999999988877765443 45666777776544332 22332 367999995 22 224556666
Q ss_pred cEEEE
Q psy576 116 RLVVN 120 (159)
Q Consensus 116 ~~vi~ 120 (159)
.++|.
T Consensus 272 ~~lVi 276 (518)
T PLN00206 272 SVLVL 276 (518)
T ss_pred eEEEe
Confidence 66553
No 282
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=66.35 E-value=14 Score=27.91 Aligned_cols=38 Identities=11% Similarity=0.120 Sum_probs=31.7
Q ss_pred CCCCCEEEEecchHHHHHHHHHHHhCCC-ceEEEecCCC
Q psy576 44 GIEPPVLVFVQSKERAQELYNELIYDGI-NVDVIHSDRT 81 (159)
Q Consensus 44 ~~~~~~lif~~~~~~~~~l~~~l~~~~~-~~~~~~~~~~ 81 (159)
.+++++++||.+-..+...+.+|.+.|+ ++..+.|++.
T Consensus 169 ~kdk~IvvyC~~G~Rs~~aa~~L~~~Gf~~V~~L~GGi~ 207 (314)
T PRK00142 169 LKDKKVVMYCTGGIRCEKASAWMKHEGFKEVYQLEGGII 207 (314)
T ss_pred CCcCeEEEECCCCcHHHHHHHHHHHcCCCcEEEecchHH
Confidence 3567899999998888999999988888 4778899863
No 283
>KOG0385|consensus
Probab=66.17 E-value=68 Score=27.77 Aligned_cols=58 Identities=31% Similarity=0.445 Sum_probs=39.3
Q ss_pred CCCCCEEEEecchHHHHHHHHHHHh--CCCceEEEecCCCHHHHHHHHHHHh-cCCeeEEEEeC
Q psy576 44 GIEPPVLVFVQSKERAQELYNELIY--DGINVDVIHSDRTQKQRDNVVRSFR-TGRIWILITTE 104 (159)
Q Consensus 44 ~~~~~~lif~~~~~~~~~l~~~l~~--~~~~~~~~~~~~~~~~r~~~~~~f~-~~~~~vlv~t~ 104 (159)
...+|.||.|+-.. ...-...++. .++++..+||+ ..+|....+.+. .+...|+|+|-
T Consensus 215 ~~~GPfLVi~P~St-L~NW~~Ef~rf~P~l~~~~~~Gd--k~eR~~~~r~~~~~~~fdV~iTsY 275 (971)
T KOG0385|consen 215 GIPGPFLVIAPKST-LDNWMNEFKRFTPSLNVVVYHGD--KEERAALRRDIMLPGRFDVCITSY 275 (971)
T ss_pred CCCCCeEEEeeHhh-HHHHHHHHHHhCCCcceEEEeCC--HHHHHHHHHHhhccCCCceEeehH
Confidence 45689999998532 2222222222 37789999994 788888888755 47889999884
No 284
>PRK13767 ATP-dependent helicase; Provisional
Probab=65.77 E-value=37 Score=29.58 Aligned_cols=79 Identities=19% Similarity=0.189 Sum_probs=49.6
Q ss_pred eeeeecCCCCChHHHH-----HHHHhcC------CCCCEEEEecchHHHHHHHHHHHh---------------C-CCceE
Q psy576 22 RMYRETEGAGSPVQAQ-----DETILLG------IEPPVLVFVQSKERAQELYNELIY---------------D-GINVD 74 (159)
Q Consensus 22 ~~~~~~~~~~~k~~~l-----~~~~~~~------~~~~~lif~~~~~~~~~l~~~l~~---------------~-~~~~~ 74 (159)
+.........+|.... ..++... ....+|++++++.-+..++..|.+ . ++.+.
T Consensus 49 nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~ 128 (876)
T PRK13767 49 NVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVA 128 (876)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEE
Confidence 4555555557777652 2222211 123589999999888876654321 1 45678
Q ss_pred EEecCCCHHHHHHHHHHHhcCCeeEEEEeC
Q psy576 75 VIHSDRTQKQRDNVVRSFRTGRIWILITTE 104 (159)
Q Consensus 75 ~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~ 104 (159)
..||+.+..++.+.+. ....|+|+|+
T Consensus 129 v~~Gdt~~~~r~~~l~----~~p~IlVtTP 154 (876)
T PRK13767 129 IRTGDTSSYEKQKMLK----KPPHILITTP 154 (876)
T ss_pred EEcCCCCHHHHHHHHh----CCCCEEEecH
Confidence 8999998877765433 3567999986
No 285
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=65.68 E-value=62 Score=27.84 Aligned_cols=75 Identities=12% Similarity=0.034 Sum_probs=46.3
Q ss_pred eecCCCCChHHH--HHHHHhcCCCCCEEEEecchHHHHHHHHHH----HhCCCceEEEecC-----CCHHHHHHHHHHHh
Q psy576 25 RETEGAGSPVQA--QDETILLGIEPPVLVFVQSKERAQELYNEL----IYDGINVDVIHSD-----RTQKQRDNVVRSFR 93 (159)
Q Consensus 25 ~~~~~~~~k~~~--l~~~~~~~~~~~~lif~~~~~~~~~l~~~l----~~~~~~~~~~~~~-----~~~~~r~~~~~~f~ 93 (159)
..+....+|... +..++....+..++|.+++..-|...++++ +..|+.+...+++ +.+.++..+
T Consensus 88 aem~TGeGKTLta~Lpa~l~aL~g~~V~VVTpn~yLA~Rdae~m~~l~~~LGLsv~~~~~~s~~~~~~~~~rr~~----- 162 (762)
T TIGR03714 88 AEMKTGEGKTLTATMPLYLNALTGKGAMLVTTNDYLAKRDAEEMGPVYEWLGLTVSLGVVDDPDEEYDANEKRKI----- 162 (762)
T ss_pred eEecCCcchHHHHHHHHHHHhhcCCceEEeCCCHHHHHHHHHHHHHHHhhcCCcEEEEECCCCccccCHHHHHHh-----
Confidence 334444555544 333344445667999999998888777766 4447888777664 444444332
Q ss_pred cCCeeEEEEeCC
Q psy576 94 TGRIWILITTEL 105 (159)
Q Consensus 94 ~~~~~vlv~t~~ 105 (159)
...+|+++|+.
T Consensus 163 -y~~dIvygTp~ 173 (762)
T TIGR03714 163 -YNSDIVYTTNS 173 (762)
T ss_pred -CCCCEEEECch
Confidence 23678888854
No 286
>PRK06646 DNA polymerase III subunit chi; Provisional
Probab=64.96 E-value=19 Score=24.27 Aligned_cols=55 Identities=9% Similarity=-0.025 Sum_probs=39.9
Q ss_pred eeecCCCCChHHHHHHHHhc--CCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecC
Q psy576 24 YRETEGAGSPVQAQDETILL--GIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSD 79 (159)
Q Consensus 24 ~~~~~~~~~k~~~l~~~~~~--~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~ 79 (159)
|+.+. ...+...+.+++.+ ..+.+++|.|.+...+..+=+.|-......-+.|+.
T Consensus 6 FYhL~-~~~~~~~acrL~~Ka~~~G~rv~I~~~d~~~~~~LD~~LWtf~~~SFlPH~~ 62 (154)
T PRK06646 6 IYQTS-DELLLKSILLLIEKCYYSDLKSVILTADADQQEMLNKNLWTYSRKQFIPHGS 62 (154)
T ss_pred EEEeC-CChHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHhcCCCCCCCCCCCC
Confidence 33343 36788888888874 467789999999999999999987654444455663
No 287
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=64.69 E-value=65 Score=25.05 Aligned_cols=71 Identities=8% Similarity=-0.014 Sum_probs=35.0
Q ss_pred ChHHHHHHHHhcCCCCCEEEEecc----hHHHHHHHHHHHhCCCceEEEecC---CCHHHHHHHHHHHhcCCeeEEEE
Q psy576 32 SPVQAQDETILLGIEPPVLVFVQS----KERAQELYNELIYDGINVDVIHSD---RTQKQRDNVVRSFRTGRIWILIT 102 (159)
Q Consensus 32 ~k~~~l~~~~~~~~~~~~lif~~~----~~~~~~l~~~l~~~~~~~~~~~~~---~~~~~r~~~~~~f~~~~~~vlv~ 102 (159)
+....|.+.+.....++++|.+.. ....+.+.+.|++.++.+..+.+- -+.+.-.+..+.++..+.+++|+
T Consensus 17 g~~~~l~~~~~~~g~~~~livt~~~~~~~g~~~~v~~~L~~~~i~~~~f~~v~~np~~~~v~~~~~~~~~~~~D~Iia 94 (383)
T PRK09860 17 DSLTDAMNMMADYGFTRTLIVTDNMLTKLGMAGDVQKALEERNIFSVIYDGTQPNPTTENVAAGLKLLKENNCDSVIS 94 (383)
T ss_pred CHHHHHHHHHHhcCCCEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHHcCCCEEEE
Confidence 455555555554333445544432 113445666665555554333331 23444455555666666666654
No 288
>PRK09189 uroporphyrinogen-III synthase; Validated
Probab=63.93 E-value=43 Score=23.91 Aligned_cols=72 Identities=10% Similarity=-0.020 Sum_probs=41.5
Q ss_pred ChHHHHHHHHhc--CCCCCEEEEecchHHHHHHHHHHHhCCCceE--EEecCC-CHHHHHHHHHHHhcCCeeEEEEeC
Q psy576 32 SPVQAQDETILL--GIEPPVLVFVQSKERAQELYNELIYDGINVD--VIHSDR-TQKQRDNVVRSFRTGRIWILITTE 104 (159)
Q Consensus 32 ~k~~~l~~~~~~--~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~--~~~~~~-~~~~r~~~~~~f~~~~~~vlv~t~ 104 (159)
..-+.|.+++.. ..++++++++.... -+.+.+.|.+.|..+. .+|... .+.......+.+..+.+++++-|+
T Consensus 102 ~~~e~L~~~~~~~~~~~~~vL~~rg~~~-r~~l~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~~~d~i~f~S 178 (240)
T PRK09189 102 GDGVRLAETVAAALAPTARLLYLAGRPR-APVFEDRLAAAGIPFRVAECYDMLPVMYSPATLSAILGGAPFDAVLLYS 178 (240)
T ss_pred CCHHHHHHHHHHhcCCCCcEEEeccCcc-cchhHHHHHhCCCeeEEEEEEEeecCCCChHHHHHHHhcCCCCEEEEeC
Confidence 344555555543 24566777766544 4788888988876543 334322 222334556777777776555443
No 289
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=63.85 E-value=54 Score=23.85 Aligned_cols=56 Identities=16% Similarity=0.147 Sum_probs=40.4
Q ss_pred CCCEEEEecchHHHHHHHHHHHhC-CCceE-EEecCCCHHHHHHHHHHHhcCCeeEEE
Q psy576 46 EPPVLVFVQSKERAQELYNELIYD-GINVD-VIHSDRTQKQRDNVVRSFRTGRIWILI 101 (159)
Q Consensus 46 ~~~~lif~~~~~~~~~l~~~l~~~-~~~~~-~~~~~~~~~~r~~~~~~f~~~~~~vlv 101 (159)
+.++-++-.+...++.+.+.|++. +..+. ..||-+++++...+++..+....++|+
T Consensus 105 ~~~v~llG~~~~v~~~a~~~l~~~y~l~i~g~~~Gyf~~~e~~~i~~~I~~s~~dil~ 162 (243)
T PRK03692 105 GTPVFLVGGKPEVLAQTEAKLRTQWNVNIVGSQDGYFTPEQRQALFERIHASGAKIVT 162 (243)
T ss_pred CCeEEEECCCHHHHHHHHHHHHHHhCCEEEEEeCCCCCHHHHHHHHHHHHhcCCCEEE
Confidence 346666667777788888888665 55544 567777777878889998887766554
No 290
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=63.79 E-value=8.3 Score=23.47 Aligned_cols=36 Identities=17% Similarity=0.222 Sum_probs=29.2
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhCCCceE-EEecCC
Q psy576 45 IEPPVLVFVQSKERAQELYNELIYDGINVD-VIHSDR 80 (159)
Q Consensus 45 ~~~~~lif~~~~~~~~~l~~~l~~~~~~~~-~~~~~~ 80 (159)
...+++++|.+-......+..|++.|+... .+.|++
T Consensus 60 ~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~~l~gG~ 96 (110)
T COG0607 60 DDDPIVVYCASGVRSAAAAAALKLAGFTNVYNLDGGI 96 (110)
T ss_pred CCCeEEEEeCCCCChHHHHHHHHHcCCccccccCCcH
Confidence 467899999999999999999999887665 556654
No 291
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=63.26 E-value=25 Score=23.69 Aligned_cols=36 Identities=8% Similarity=0.081 Sum_probs=26.5
Q ss_pred CCCCEEEEecchH-HHHHHHHHHHhCCCc-eEEEecCC
Q psy576 45 IEPPVLVFVQSKE-RAQELYNELIYDGIN-VDVIHSDR 80 (159)
Q Consensus 45 ~~~~~lif~~~~~-~~~~l~~~l~~~~~~-~~~~~~~~ 80 (159)
++.++++||.+-. .+......|...|++ +..+.|++
T Consensus 115 ~d~~IVvYC~~G~~~S~~aa~~L~~~G~~~V~~l~GG~ 152 (162)
T TIGR03865 115 KDRPLVFYCLADCWMSWNAAKRALAYGYSNVYWYPDGT 152 (162)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHhcCCcceEEecCCH
Confidence 5678999999753 456667777777774 66778875
No 292
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=63.09 E-value=35 Score=21.46 Aligned_cols=49 Identities=22% Similarity=0.266 Sum_probs=27.7
Q ss_pred hccceeeeecCCCCC---hHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHH
Q psy576 18 SNLARMYRETEGAGS---PVQAQDETILLGIEPPVLVFVQSKERAQELYNELI 67 (159)
Q Consensus 18 ~~i~~~~~~~~~~~~---k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~ 67 (159)
-++.+.+..+....- .++.+.+.+.. ..+|+++||.|-..+..++.+-+
T Consensus 56 ~Gl~y~~iPv~~~~~~~~~v~~f~~~l~~-~~~Pvl~hC~sG~Ra~~l~~l~~ 107 (110)
T PF04273_consen 56 LGLQYVHIPVDGGAITEEDVEAFADALES-LPKPVLAHCRSGTRASALWALAQ 107 (110)
T ss_dssp CT-EEEE----TTT--HHHHHHHHHHHHT-TTTSEEEE-SCSHHHHHHHHHHH
T ss_pred cCCeEEEeecCCCCCCHHHHHHHHHHHHh-CCCCEEEECCCChhHHHHHHHHh
Confidence 355666666665433 33345555665 45799999999998888876543
No 293
>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase. This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.
Probab=62.74 E-value=27 Score=22.28 Aligned_cols=37 Identities=19% Similarity=0.317 Sum_probs=27.6
Q ss_pred CCCCEEEEecchHH---------HHHHHHHHHh---CCCceEEEecCCC
Q psy576 45 IEPPVLVFVQSKER---------AQELYNELIY---DGINVDVIHSDRT 81 (159)
Q Consensus 45 ~~~~~lif~~~~~~---------~~~l~~~l~~---~~~~~~~~~~~~~ 81 (159)
...++||||.+... +..+.+.|.. .+.++.++.||+.
T Consensus 74 ~~~~VVvYd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~L~GG~~ 122 (132)
T cd01446 74 ESLAVVVYDESSSDRERLREDSTAESVLGKLLRKLQEGCSVYLLKGGFE 122 (132)
T ss_pred CCCeEEEEeCCCcchhhccccchHHHHHHHHHHhcCCCceEEEEcchHH
Confidence 56789999987765 6677777766 4567889999863
No 294
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=62.45 E-value=14 Score=27.36 Aligned_cols=104 Identities=13% Similarity=0.204 Sum_probs=59.0
Q ss_pred ccceeeeecCCCCChHHHHHHHHhc--CCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCC
Q psy576 19 NLARMYRETEGAGSPVQAQDETILL--GIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGR 96 (159)
Q Consensus 19 ~i~~~~~~~~~~~~k~~~l~~~~~~--~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~ 96 (159)
.|.+....-.-..+.-..+.+++.. -+.-++||+|....=.....+.+++.-..+..+.|.... --.+++. .
T Consensus 33 ~I~h~tyPdnf~~e~EttIskI~~lAdDp~mKaIVv~q~vpGt~~af~kIkekRpDIl~ia~~~~E--Dp~~i~~----~ 106 (275)
T PF12683_consen 33 MIKHVTYPDNFMSEQETTISKIVSLADDPDMKAIVVSQAVPGTAEAFRKIKEKRPDILLIAGEPHE--DPEVISS----A 106 (275)
T ss_dssp EEEEEE--TTGGGCHHHHHHHHHGGGG-TTEEEEEEE-SS---HHHHHHHHHH-TTSEEEESS--S---HHHHHH----H
T ss_pred eEEEEeCCCcccchHHHHHHHHHHhccCCCccEEEEeCCCcchHHHHHHHHhcCCCeEEEcCCCcC--CHHHHhh----c
Confidence 4555444433234444445555542 244579999998887777777787766667778775322 2223333 3
Q ss_pred eeEEEEeCCcccccccC------CCcEEEEecCCCCHH
Q psy576 97 IWILITTELLGRGIDFR------TVRLVVNYDFPSSAI 128 (159)
Q Consensus 97 ~~vlv~t~~~~~g~~i~------~~~~vi~~~~~~~~~ 128 (159)
.++.+.++...+|..++ .++..+|++.|.+..
T Consensus 107 aDi~~~~D~~~~G~~i~~~Ak~mGAktFVh~sfprhms 144 (275)
T PF12683_consen 107 ADIVVNPDEISRGYTIVWAAKKMGAKTFVHYSFPRHMS 144 (275)
T ss_dssp SSEEEE--HHHHHHHHHHHHHHTT-S-EEEEEETTGGG
T ss_pred cCeEeccchhhccHHHHHHHHHcCCceEEEEechhhcc
Confidence 56888899999999887 567899999998655
No 295
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=60.95 E-value=65 Score=23.83 Aligned_cols=66 Identities=15% Similarity=0.270 Sum_probs=46.2
Q ss_pred HHHHHhcCCCCCEEEEecchHHHHHHHHHHHhC-CCceEEEecCCCHH-HHHHHHHHHhcC--CeeEEEEe
Q psy576 37 QDETILLGIEPPVLVFVQSKERAQELYNELIYD-GINVDVIHSDRTQK-QRDNVVRSFRTG--RIWILITT 103 (159)
Q Consensus 37 l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~-~r~~~~~~f~~~--~~~vlv~t 103 (159)
+.+.+.. ++..+++...+.+..+++++.|... +..+.++.-+++.. +...+.+..... .+++||..
T Consensus 22 ~A~~lA~-~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~~~~~~IdvLVNN 91 (265)
T COG0300 22 LAKQLAR-RGYNLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELKERGGPIDVLVNN 91 (265)
T ss_pred HHHHHHH-CCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHHhcCCcccEEEEC
Confidence 4444544 5678888999999999999998664 67777888877544 444455555553 67788753
No 296
>PRK01172 ski2-like helicase; Provisional
Probab=60.92 E-value=73 Score=26.79 Aligned_cols=76 Identities=17% Similarity=0.086 Sum_probs=48.9
Q ss_pred eeeeecCCCCChHHHHHHH-Hhc-CCCCCEEEEecchHHHHHHHHHHHh---CCCceEEEecCCCHHHHHHHHHHHhcCC
Q psy576 22 RMYRETEGAGSPVQAQDET-ILL-GIEPPVLVFVQSKERAQELYNELIY---DGINVDVIHSDRTQKQRDNVVRSFRTGR 96 (159)
Q Consensus 22 ~~~~~~~~~~~k~~~l~~~-~~~-~~~~~~lif~~~~~~~~~l~~~l~~---~~~~~~~~~~~~~~~~r~~~~~~f~~~~ 96 (159)
..+...+...+|....... +.. ..+.++++.+++++-+.+.++.+.+ .+..+...+|+...... .+ ..
T Consensus 39 nvlv~apTGSGKTl~a~lail~~l~~~~k~v~i~P~raLa~q~~~~~~~l~~~g~~v~~~~G~~~~~~~-----~~--~~ 111 (674)
T PRK01172 39 NVIVSVPTAAGKTLIAYSAIYETFLAGLKSIYIVPLRSLAMEKYEELSRLRSLGMRVKISIGDYDDPPD-----FI--KR 111 (674)
T ss_pred cEEEECCCCchHHHHHHHHHHHHHHhCCcEEEEechHHHHHHHHHHHHHHhhcCCeEEEEeCCCCCChh-----hh--cc
Confidence 4555556667777653322 221 2356899999999999988887753 36778888887654321 11 24
Q ss_pred eeEEEEeC
Q psy576 97 IWILITTE 104 (159)
Q Consensus 97 ~~vlv~t~ 104 (159)
.+|+|+|+
T Consensus 112 ~dIiv~Tp 119 (674)
T PRK01172 112 YDVVILTS 119 (674)
T ss_pred CCEEEECH
Confidence 57888886
No 297
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=59.93 E-value=31 Score=19.73 Aligned_cols=29 Identities=24% Similarity=0.182 Sum_probs=23.5
Q ss_pred CCEEEEecchHHHHHHHHHHHhCCCceEE
Q psy576 47 PPVLVFVQSKERAQELYNELIYDGINVDV 75 (159)
Q Consensus 47 ~~~lif~~~~~~~~~l~~~l~~~~~~~~~ 75 (159)
...+|.+.|..++....+.|++.++++..
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~~~l 30 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIPVRL 30 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCcEEE
Confidence 35788889999999999999988775443
No 298
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=59.68 E-value=64 Score=23.28 Aligned_cols=84 Identities=14% Similarity=0.115 Sum_probs=56.7
Q ss_pred CCCCEEEEecc-----------hHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcC----CeeEEEEeCCcccc
Q psy576 45 IEPPVLVFVQS-----------KERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTG----RIWILITTELLGRG 109 (159)
Q Consensus 45 ~~~~~lif~~~-----------~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~----~~~vlv~t~~~~~g 109 (159)
+.+-+||+++. ..+++.+.+.|++.++.+. ++..++..+-.+.++.|.+. ..+++++. .++.|
T Consensus 7 p~g~alII~n~~f~~~~~r~g~~~D~~~l~~~f~~lgF~V~-~~~dlt~~em~~~l~~~~~~~~~~~~d~~v~~-~~sHG 84 (241)
T smart00115 7 PRGLALIINNENFHSLPRRNGTDVDAENLTELFQSLGYEVH-VKNNLTAEEMLEELKEFAERPEHSDSDSFVCV-LLSHG 84 (241)
T ss_pred CCcEEEEEECccCCCCcCCCCcHHHHHHHHHHHHHCCCEEE-EecCCCHHHHHHHHHHHHhccccCCCCEEEEE-EcCCC
Confidence 44567888775 4589999999999999875 56668888888899888763 34455544 55666
Q ss_pred cccCCCcEEEEecC-CCCHHHHHHHH
Q psy576 110 IDFRTVRLVVNYDF-PSSAISYIHRI 134 (159)
Q Consensus 110 ~~i~~~~~vi~~~~-~~~~~~~~q~~ 134 (159)
. .+.|+-.|. +.+..+.....
T Consensus 85 ~----~~~l~~~D~~~v~l~~i~~~f 106 (241)
T smart00115 85 E----EGGIYGTDHSPLPLDEIFSLF 106 (241)
T ss_pred C----CCeEEEecCCEEEHHHHHHhc
Confidence 3 255555543 44555555544
No 299
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=58.60 E-value=88 Score=24.58 Aligned_cols=73 Identities=14% Similarity=0.213 Sum_probs=46.7
Q ss_pred HHHHHhcCCCCCEEEEec-----chHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCcccccc
Q psy576 37 QDETILLGIEPPVLVFVQ-----SKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGRGID 111 (159)
Q Consensus 37 l~~~~~~~~~~~~lif~~-----~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~g~~ 111 (159)
..++......+++.++.. |...+..+++-|.+.|..+..+.=. ..+..++.+.....+- ++|+++....+..
T Consensus 237 Y~~W~~~~~~~~V~l~Y~smyg~T~~ma~aiaegl~~~gv~v~~~~~~--~~~~~eI~~~i~~a~~-~vvGsPT~~~~~~ 313 (388)
T COG0426 237 YRDWAEGQPKGKVDLIYDSMYGNTEKMAQAIAEGLMKEGVDVEVINLE--DADPSEIVEEILDAKG-LVVGSPTINGGAH 313 (388)
T ss_pred HHHHHccCCcceEEEEEecccCCHHHHHHHHHHHhhhcCCceEEEEcc--cCCHHHHHHHHhhcce-EEEecCcccCCCC
Confidence 334444444445555443 6677888888888888877766543 2367777777766554 7788887665554
Q ss_pred c
Q psy576 112 F 112 (159)
Q Consensus 112 i 112 (159)
.
T Consensus 314 p 314 (388)
T COG0426 314 P 314 (388)
T ss_pred c
Confidence 3
No 300
>KOG0351|consensus
Probab=58.51 E-value=39 Score=29.77 Aligned_cols=57 Identities=23% Similarity=0.213 Sum_probs=47.0
Q ss_pred CEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcC--CeeEEEEeC
Q psy576 48 PVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTG--RIWILITTE 104 (159)
Q Consensus 48 ~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~--~~~vlv~t~ 104 (159)
-+||..+=.+-+..-...|...+++..++++.+...++..+++.+.++ .+++|-.|+
T Consensus 306 itvVISPL~SLm~DQv~~L~~~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtP 364 (941)
T KOG0351|consen 306 VTVVISPLISLMQDQVTHLSKKGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTP 364 (941)
T ss_pred ceEEeccHHHHHHHHHHhhhhcCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCH
Confidence 456666666766666666777789999999999999999999999999 788887775
No 301
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=58.11 E-value=77 Score=23.76 Aligned_cols=79 Identities=15% Similarity=0.013 Sum_probs=57.3
Q ss_pred hHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCccccccc
Q psy576 33 PVQAQDETILLGIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGRGIDF 112 (159)
Q Consensus 33 k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~g~~i 112 (159)
-+..+.+.++...-+-.+||++-..-++.+.+.+...-..+.+++.+.|..+-.++.+..+... ..+|..++- |+-.
T Consensus 53 Vf~tV~EA~~~~~a~~svI~Vp~~~aadai~EAida~i~liv~ITEgIP~~D~~~~~~~a~~~g-~~iiGPncp--GiI~ 129 (293)
T COG0074 53 VFNTVEEAVKETGANASVIFVPPPFAADAILEAIDAGIKLVVIITEGIPVLDMLELKRYAREKG-TRLIGPNCP--GIIT 129 (293)
T ss_pred HHHHHHHHHHhhCCCEEEEecCcHHHHHHHHHHHhCCCcEEEEEeCCCCHHHHHHHHHHHHhcC-CEEECCCCC--ccCc
Confidence 3455667776665566899999999999999998776667889999999988888777776654 345555544 3444
Q ss_pred CC
Q psy576 113 RT 114 (159)
Q Consensus 113 ~~ 114 (159)
|.
T Consensus 130 Pg 131 (293)
T COG0074 130 PG 131 (293)
T ss_pred CC
Confidence 44
No 302
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=57.97 E-value=57 Score=22.21 Aligned_cols=76 Identities=20% Similarity=0.156 Sum_probs=42.6
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCeeEEE-EeCCccccc---ccCCCcEEEE
Q psy576 45 IEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILI-TTELLGRGI---DFRTVRLVVN 120 (159)
Q Consensus 45 ~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv-~t~~~~~g~---~i~~~~~vi~ 120 (159)
.+.+++|.-.+.--...++.+|.+.+..+...+... . +..+.+.+ .+|+| ||..-. =+ +++...++|+
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~--~---~l~~~l~~--aDiVIsat~~~~-ii~~~~~~~~~viID 114 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT--K---NLKEHTKQ--ADIVIVAVGKPG-LVKGDMVKPGAVVID 114 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc--h---hHHHHHhh--CCEEEEcCCCCc-eecHHHccCCeEEEE
Confidence 445566655543345568899988887766666542 1 12222333 34455 444322 12 2344568889
Q ss_pred ecCCCCHH
Q psy576 121 YDFPSSAI 128 (159)
Q Consensus 121 ~~~~~~~~ 128 (159)
...|.+.+
T Consensus 115 la~prdvd 122 (168)
T cd01080 115 VGINRVPD 122 (168)
T ss_pred ccCCCccc
Confidence 98887654
No 303
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=57.87 E-value=52 Score=21.72 Aligned_cols=79 Identities=25% Similarity=0.251 Sum_probs=46.5
Q ss_pred ceeeeecCCCCChHHHHHHHHh----cCCCCCEEEEecchHHHHHHHHHHHhCC-----CceEEEecCCCHHHHHHHHHH
Q psy576 21 ARMYRETEGAGSPVQAQDETIL----LGIEPPVLVFVQSKERAQELYNELIYDG-----INVDVIHSDRTQKQRDNVVRS 91 (159)
Q Consensus 21 ~~~~~~~~~~~~k~~~l~~~~~----~~~~~~~lif~~~~~~~~~l~~~l~~~~-----~~~~~~~~~~~~~~r~~~~~~ 91 (159)
...+.......+|...+...+. .....++++.+++...+......+.... .....+++... .+.++.
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 100 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGPSLGLKVVGLYGGDSK----REQLRK 100 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHhccCCeEEEEEeCCcch----HHHHHH
Confidence 3444444555677774443332 2223679999999988888877776542 23334444322 334555
Q ss_pred HhcCCeeEEEEe
Q psy576 92 FRTGRIWILITT 103 (159)
Q Consensus 92 f~~~~~~vlv~t 103 (159)
+..+...++++|
T Consensus 101 ~~~~~~~v~~~t 112 (201)
T smart00487 101 LESGKTDILVTT 112 (201)
T ss_pred HhcCCCCEEEeC
Confidence 666666788888
No 304
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=57.65 E-value=70 Score=25.04 Aligned_cols=59 Identities=20% Similarity=0.177 Sum_probs=43.1
Q ss_pred CEEEE---ecchHHHHHHHHHHHhCCC---ceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCcc
Q psy576 48 PVLVF---VQSKERAQELYNELIYDGI---NVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLG 107 (159)
Q Consensus 48 ~~lif---~~~~~~~~~l~~~l~~~~~---~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~ 107 (159)
.+||+ +.|-.++....+.|++.|. .+...||-++ ....++.+.|.+|-+.-+++|+...
T Consensus 266 ~vIIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~~~tH~vf~-~a~~~l~~~~~~g~i~~iv~TdTi~ 330 (382)
T PRK06827 266 DVLIVDDMIASGGSMIDAAKELKSRGAKKIIVAATFGFFT-NGLEKFDKAYEEGYFDRIIGTNLVY 330 (382)
T ss_pred EEEEEeCCcCcHHHHHHHHHHHHHcCCCEEEEEEEeecCh-HHHHHHHhhcccCCCCEEEEeCCCc
Confidence 45553 4466777788888888755 4556699888 6667777778888888888998863
No 305
>PTZ00424 helicase 45; Provisional
Probab=57.15 E-value=88 Score=24.09 Aligned_cols=93 Identities=9% Similarity=0.142 Sum_probs=53.6
Q ss_pred eeecCCCCChHHHH-HHHH---hc-CCCCCEEEEecchHHHHHHHHHHHhC----CCceEEEecCCCHHHHHHHHHHHhc
Q psy576 24 YRETEGAGSPVQAQ-DETI---LL-GIEPPVLVFVQSKERAQELYNELIYD----GINVDVIHSDRTQKQRDNVVRSFRT 94 (159)
Q Consensus 24 ~~~~~~~~~k~~~l-~~~~---~~-~~~~~~lif~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~ 94 (159)
........+|.... ..++ .. ....++|+++++++-+..+.+.+... +..+....|+....+. ++.+.+
T Consensus 69 ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~ 145 (401)
T PTZ00424 69 IGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDD---INKLKA 145 (401)
T ss_pred EEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHH---HHHHcC
Confidence 34444456777542 2222 21 23457999999999888887776543 3455666777654322 333333
Q ss_pred CCeeEEEEeCCc------ccccccCCCcEEEE
Q psy576 95 GRIWILITTELL------GRGIDFRTVRLVVN 120 (159)
Q Consensus 95 ~~~~vlv~t~~~------~~g~~i~~~~~vi~ 120 (159)
+ ..|+|+|.-. ...+.+..+.++|.
T Consensus 146 ~-~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvVi 176 (401)
T PTZ00424 146 G-VHMVVGTPGRVYDMIDKRHLRVDDLKLFIL 176 (401)
T ss_pred C-CCEEEECcHHHHHHHHhCCcccccccEEEE
Confidence 3 5789999632 12344566666664
No 306
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=56.72 E-value=31 Score=22.50 Aligned_cols=45 Identities=7% Similarity=0.001 Sum_probs=27.2
Q ss_pred HHHHHHh---cCCCCCEEEEecc---hHHHHHHHHHHHhCCC-ceEEEecCC
Q psy576 36 AQDETIL---LGIEPPVLVFVQS---KERAQELYNELIYDGI-NVDVIHSDR 80 (159)
Q Consensus 36 ~l~~~~~---~~~~~~~lif~~~---~~~~~~l~~~l~~~~~-~~~~~~~~~ 80 (159)
.+.+++. -....++|+||.+ --.+..+.=.|+..|. ++.++.|++
T Consensus 82 ~~~~~~~~~GI~~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~~v~ildGG~ 133 (138)
T cd01445 82 EFAAMFEAKGIDLDKHLIATDGDDLGGFTACHIALAARLCGHPDVAILDGGF 133 (138)
T ss_pred HHHHHHHHcCCCCCCeEEEECCCCCcchHHHHHHHHHHHcCCCCeEEeCCCH
Confidence 3444443 3356689999975 3445555555666665 467777775
No 307
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=56.68 E-value=49 Score=21.06 Aligned_cols=56 Identities=13% Similarity=0.183 Sum_probs=35.6
Q ss_pred CCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeC
Q psy576 47 PPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTE 104 (159)
Q Consensus 47 ~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~ 104 (159)
..++|=+.+.+.+....+++.+.+.+...-+.++++++... ++.+.+. ..++++.+
T Consensus 68 ~DVvIDfT~p~~~~~~~~~~~~~g~~~ViGTTG~~~~~~~~-l~~~a~~-~~vl~a~N 123 (124)
T PF01113_consen 68 ADVVIDFTNPDAVYDNLEYALKHGVPLVIGTTGFSDEQIDE-LEELAKK-IPVLIAPN 123 (124)
T ss_dssp -SEEEEES-HHHHHHHHHHHHHHT-EEEEE-SSSHHHHHHH-HHHHTTT-SEEEE-SS
T ss_pred CCEEEEcCChHHhHHHHHHHHhCCCCEEEECCCCCHHHHHH-HHHHhcc-CCEEEeCC
Confidence 45888666888888888888788888877777776655544 4444443 77777764
No 308
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=56.35 E-value=20 Score=22.77 Aligned_cols=37 Identities=8% Similarity=0.091 Sum_probs=26.0
Q ss_pred CCCCEEEEec-chHHHHHHHHHHHhC------------CC-ceEEEecCCC
Q psy576 45 IEPPVLVFVQ-SKERAQELYNELIYD------------GI-NVDVIHSDRT 81 (159)
Q Consensus 45 ~~~~~lif~~-~~~~~~~l~~~l~~~------------~~-~~~~~~~~~~ 81 (159)
.+.+++++|. +-..+...+..|+.. +. ++..+.||+.
T Consensus 67 ~~~~vv~yC~~sg~rs~~aa~~L~~~~~~~~~~~~~~~g~~~v~~L~GG~~ 117 (121)
T cd01530 67 KRRVLIFHCEFSSKRGPRMARHLRNLDRELNSNRYPLLYYPEIYILEGGYK 117 (121)
T ss_pred CCCEEEEECCCccccHHHHHHHHHHHhhhhccccCCCCCCCeEEEEcChhH
Confidence 4567888996 766677777777653 43 6778888764
No 309
>cd00032 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis). Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologs.
Probab=56.30 E-value=73 Score=22.94 Aligned_cols=85 Identities=12% Similarity=0.089 Sum_probs=56.8
Q ss_pred CCCCEEEEecc------------hHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhc---CCeeEEEEeCCcccc
Q psy576 45 IEPPVLVFVQS------------KERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRT---GRIWILITTELLGRG 109 (159)
Q Consensus 45 ~~~~~lif~~~------------~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~---~~~~vlv~t~~~~~g 109 (159)
+.+.+||+++. ..+++.+.+.|++.++.+. ++..++..+-.+.++.|.+ ....++++. .++.|
T Consensus 8 ~~g~aLII~n~~f~~~~~~r~g~~~D~~~l~~~f~~lgF~V~-~~~nlt~~~~~~~l~~f~~~~~~~~d~~v~~-~~sHG 85 (243)
T cd00032 8 RRGLALIINNENFDKGLKDRDGTDVDAENLTKLFESLGYEVE-VKNNLTAEEILEELKEFASPDHSDSDSFVCV-ILSHG 85 (243)
T ss_pred CCCEEEEEechhcCCCCCCCCChHHHHHHHHHHHHHCCCEEE-EeCCCCHHHHHHHHHHHHhccCCCCCeeEEE-ECCCC
Confidence 34456776663 4678999999999999874 5667788888888888874 223333333 45566
Q ss_pred cccCCCcEEEEec-CCCCHHHHHHHHh
Q psy576 110 IDFRTVRLVVNYD-FPSSAISYIHRIG 135 (159)
Q Consensus 110 ~~i~~~~~vi~~~-~~~~~~~~~q~~G 135 (159)
.. +.++-.| .+.+..+..+...
T Consensus 86 ~~----~~l~~~D~~~v~l~~i~~~f~ 108 (243)
T cd00032 86 EE----GGIYGTDGDVVPIDEITSLFN 108 (243)
T ss_pred CC----CEEEEecCcEEEHHHHHHhhc
Confidence 54 5566555 4556666666654
No 310
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=55.99 E-value=79 Score=23.24 Aligned_cols=69 Identities=12% Similarity=0.097 Sum_probs=44.7
Q ss_pred HHHHHHHHhcC--CCCCEEEEecchHHHHHHHHHHHhC--CCceEEEe-cCCCHHHHHHHHHHHhcCCeeEEEE
Q psy576 34 VQAQDETILLG--IEPPVLVFVQSKERAQELYNELIYD--GINVDVIH-SDRTQKQRDNVVRSFRTGRIWILIT 102 (159)
Q Consensus 34 ~~~l~~~~~~~--~~~~~lif~~~~~~~~~l~~~l~~~--~~~~~~~~-~~~~~~~r~~~~~~f~~~~~~vlv~ 102 (159)
.++...+++.. .+.++-++-.+...++.....|++. +.++...| |-.++.+.+.+++.......+||..
T Consensus 94 ~Dl~~~Ll~~a~~~~~~vfllGgkp~V~~~a~~~l~~~~p~l~ivg~h~GYf~~~e~~~i~~~I~~s~pdil~V 167 (253)
T COG1922 94 TDLVEALLKRAAEEGKRVFLLGGKPGVAEQAAAKLRAKYPGLKIVGSHDGYFDPEEEEAIVERIAASGPDILLV 167 (253)
T ss_pred HHHHHHHHHHhCccCceEEEecCCHHHHHHHHHHHHHHCCCceEEEecCCCCChhhHHHHHHHHHhcCCCEEEE
Confidence 34444444432 2344555556667777778888766 34666555 8888888888999998887776553
No 311
>KOG1131|consensus
Probab=55.89 E-value=1.2e+02 Score=25.22 Aligned_cols=80 Identities=18% Similarity=0.241 Sum_probs=50.7
Q ss_pred CCCEEEEecchHHHHHHHHHHHhCCC--c----eEEEecCCCHHHHHHHHHHHhc----CCeeEE--EEeCCcccccccC
Q psy576 46 EPPVLVFVQSKERAQELYNELIYDGI--N----VDVIHSDRTQKQRDNVVRSFRT----GRIWIL--ITTELLGRGIDFR 113 (159)
Q Consensus 46 ~~~~lif~~~~~~~~~l~~~l~~~~~--~----~~~~~~~~~~~~r~~~~~~f~~----~~~~vl--v~t~~~~~g~~i~ 113 (159)
++.++.|+.+---.+.+...+...|+ . -.+.-+.-+..+-.-.++.++. |.-.|| |+-....+|+|+.
T Consensus 530 pdG~v~ff~sylYmesiv~~w~~~gil~ei~k~KL~fIetpD~~ETs~al~ny~~aC~~gRGavl~sVargkVsEgidF~ 609 (755)
T KOG1131|consen 530 PDGIVCFFPSYLYMESIVSRWYEQGILDEIMKYKLLFIETPDFRETSLALANYRYACDNGRGAVLLSVARGKVSEGIDFD 609 (755)
T ss_pred CCceEEEEehHHHHHHHHHHHHHHhHHHHHhhCceEEEeCCchhhhHHHHHHHHHHhcCCCCceEEEEecCccccCcccc
Confidence 34577888887777776665554432 1 1444454455555556666543 444455 4558899999997
Q ss_pred CCc--EEEEecCCC
Q psy576 114 TVR--LVVNYDFPS 125 (159)
Q Consensus 114 ~~~--~vi~~~~~~ 125 (159)
+-. .|++++.|.
T Consensus 610 hhyGR~ViM~gIP~ 623 (755)
T KOG1131|consen 610 HHYGREVIMEGIPY 623 (755)
T ss_pred cccCceEEEEeccc
Confidence 644 899999886
No 312
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=55.85 E-value=44 Score=20.23 Aligned_cols=60 Identities=12% Similarity=0.178 Sum_probs=30.3
Q ss_pred EEEEecchHHHHHHHHHHHhCCCceEEE--ecCCCHHHHHHHHHHHhcCCeeEEEEeCCccccc
Q psy576 49 VLVFVQSKERAQELYNELIYDGINVDVI--HSDRTQKQRDNVVRSFRTGRIWILITTELLGRGI 110 (159)
Q Consensus 49 ~lif~~~~~~~~~l~~~l~~~~~~~~~~--~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~g~ 110 (159)
++|.-........+.+.+.+.|.....+ .++..+. ...+.....+.++ |++.|+..+.+.
T Consensus 2 vliVGG~~~~~~~~~~~~~~~G~~~~~hg~~~~~~~~-~~~l~~~i~~aD~-VIv~t~~vsH~~ 63 (97)
T PF10087_consen 2 VLIVGGREDRERRYKRILEKYGGKLIHHGRDGGDEKK-ASRLPSKIKKADL-VIVFTDYVSHNA 63 (97)
T ss_pred EEEEcCCcccHHHHHHHHHHcCCEEEEEecCCCCccc-hhHHHHhcCCCCE-EEEEeCCcChHH
Confidence 3444444556667777777777776555 1222221 1113333333333 666676665443
No 313
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=54.88 E-value=18 Score=21.93 Aligned_cols=36 Identities=17% Similarity=0.179 Sum_probs=22.8
Q ss_pred CCCCEEEEecchHHHHHHHHH-----HHhCCC-ceEEEecCC
Q psy576 45 IEPPVLVFVQSKERAQELYNE-----LIYDGI-NVDVIHSDR 80 (159)
Q Consensus 45 ~~~~~lif~~~~~~~~~l~~~-----l~~~~~-~~~~~~~~~ 80 (159)
....++++|.+.......... |...|. ++.++.||+
T Consensus 66 ~~~~iv~yc~~~~~~~~~~~~~~~~~l~~~g~~~v~~l~GG~ 107 (113)
T PF00581_consen 66 KDKDIVFYCSSGWRSGSAAAARVAWILKKLGFKNVYILDGGF 107 (113)
T ss_dssp TTSEEEEEESSSCHHHHHHHHHHHHHHHHTTTSSEEEETTHH
T ss_pred ccccceeeeecccccchhHHHHHHHHHHHcCCCCEEEecChH
Confidence 444688889544444444433 666676 788888875
No 314
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=54.39 E-value=30 Score=20.55 Aligned_cols=42 Identities=19% Similarity=0.206 Sum_probs=26.6
Q ss_pred HHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCC
Q psy576 63 YNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTEL 105 (159)
Q Consensus 63 ~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~ 105 (159)
+++|++.|+++..++..... .+..+.+.+++|+.+.+|.|..
T Consensus 23 a~~L~~~Gi~~~~~~~ki~~-~~~~i~~~i~~g~id~VIn~~~ 64 (90)
T smart00851 23 AKFLREAGLPVKTLHPKVHG-GILAILDLIKNGEIDLVINTLY 64 (90)
T ss_pred HHHHHHCCCcceeccCCCCC-CCHHHHHHhcCCCeEEEEECCC
Confidence 45566677765333332211 2235888999999999988764
No 315
>KOG1255|consensus
Probab=53.80 E-value=87 Score=23.05 Aligned_cols=69 Identities=10% Similarity=-0.005 Sum_probs=52.1
Q ss_pred HHHHHHhcCCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeC
Q psy576 36 AQDETILLGIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTE 104 (159)
Q Consensus 36 ~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~ 104 (159)
.+.+..+.....-.+||++-.--+..+.+.+.+.-.-++.++++.++.+-.++-+.+...+..=||..+
T Consensus 86 sV~eA~~~t~a~AsvIyVPpp~Aa~aI~eaieaEipLiVcITEGIPQhDMvrvk~~L~~Q~KtRLvGPN 154 (329)
T KOG1255|consen 86 SVAEAKKETGADASVIYVPPPFAAAAIEEAIEAEIPLIVCITEGIPQHDMVRVKHALNSQSKTRLVGPN 154 (329)
T ss_pred hHHHHHHhhCCCceEEEeCChhHHHHHHHHHhccCCEEEEecCCCchhhHHHHHHHHhhcccceecCCC
Confidence 345555555566788999999999999998877655678999999999988888888775544444433
No 316
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=53.64 E-value=50 Score=20.26 Aligned_cols=39 Identities=10% Similarity=0.176 Sum_probs=32.8
Q ss_pred chHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHh
Q psy576 55 SKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFR 93 (159)
Q Consensus 55 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~ 93 (159)
....++++.+.....+....++...++|.+...+.+.+.
T Consensus 42 G~GK~eei~~~~~~~~~d~vvfd~~Lsp~Q~rNLe~~~~ 80 (95)
T PF13167_consen 42 GSGKVEEIKELIEELDADLVVFDNELSPSQQRNLEKALG 80 (95)
T ss_pred chhHHHHHHHHHhhcCCCEEEECCCCCHHHHHHHHHHHC
Confidence 345688999988888899999999999999888888773
No 317
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=51.65 E-value=1.7e+02 Score=25.89 Aligned_cols=69 Identities=12% Similarity=-0.021 Sum_probs=47.0
Q ss_pred CCChHHH--HHHHHhcCCCCCEEEEecchHHHHHHHHHHH----hCCCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEe
Q psy576 30 AGSPVQA--QDETILLGIEPPVLVFVQSKERAQELYNELI----YDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITT 103 (159)
Q Consensus 30 ~~~k~~~--l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~----~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t 103 (159)
.++|... +...+....+..+.|.+.+..-|...++++. ..|+.+..+.+++++.++.. .-..+|+.+|
T Consensus 105 GEGKTL~a~lp~~l~al~g~~VhIvT~ndyLA~RD~e~m~~l~~~lGlsv~~i~~~~~~~~r~~------~Y~~dI~YgT 178 (908)
T PRK13107 105 GEGKTLTATLPAYLNALTGKGVHVITVNDYLARRDAENNRPLFEFLGLTVGINVAGLGQQEKKA------AYNADITYGT 178 (908)
T ss_pred CCCchHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHh------cCCCCeEEeC
Confidence 3455444 3444455566779999999988887777654 34899999999998755433 2345677777
Q ss_pred C
Q psy576 104 E 104 (159)
Q Consensus 104 ~ 104 (159)
.
T Consensus 179 ~ 179 (908)
T PRK13107 179 N 179 (908)
T ss_pred C
Confidence 5
No 318
>PRK01189 V-type ATP synthase subunit F; Provisional
Probab=51.55 E-value=45 Score=20.82 Aligned_cols=22 Identities=9% Similarity=0.151 Sum_probs=10.3
Q ss_pred HHHHHHHhcCCeeEEEEeCCcc
Q psy576 86 DNVVRSFRTGRIWILITTELLG 107 (159)
Q Consensus 86 ~~~~~~f~~~~~~vlv~t~~~~ 107 (159)
+++.+.+.+.++-|++-|..+.
T Consensus 35 ~~~~~~l~~~~~gII~iTE~~a 56 (104)
T PRK01189 35 KKFLEIFNNPKCKYIFVSESTK 56 (104)
T ss_pred HHHHHHHhcCCeEEEEEEHHHH
Confidence 4444444444555555444433
No 319
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=51.44 E-value=47 Score=28.89 Aligned_cols=73 Identities=11% Similarity=0.048 Sum_probs=42.7
Q ss_pred cCCCCChHHHHHHHH----hcCCCCCEEEEe-cchHHHHHHHHHHHhC---------------------------CCceE
Q psy576 27 TEGAGSPVQAQDETI----LLGIEPPVLVFV-QSKERAQELYNELIYD---------------------------GINVD 74 (159)
Q Consensus 27 ~~~~~~k~~~l~~~~----~~~~~~~~lif~-~~~~~~~~l~~~l~~~---------------------------~~~~~ 74 (159)
.....+|...+.-.+ ......+.|||+ ++++-++.+++.+.+. ++++.
T Consensus 38 apTGSGKTaa~aafll~~~~~~~~~~rLv~~vPtReLa~Qi~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~ 117 (844)
T TIGR02621 38 TPTGLGKTSIIAAWLLAVEIGAKVPRRLVYVVNRRTVVDQVTEEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAIS 117 (844)
T ss_pred cCCCCcccHHHHHhhccccccccccceEEEeCchHHHHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEE
Confidence 344467766432111 112234577866 8888777766554322 25678
Q ss_pred EEecCCCHHHHHHHHHHHhcCCeeEEEEe
Q psy576 75 VIHSDRTQKQRDNVVRSFRTGRIWILITT 103 (159)
Q Consensus 75 ~~~~~~~~~~r~~~~~~f~~~~~~vlv~t 103 (159)
.++|+.+..... +... ....|+|+|
T Consensus 118 ~l~GG~~~~~q~---~~l~-~~p~IIVgT 142 (844)
T TIGR02621 118 TLRGQFADNDEW---MLDP-HRPAVIVGT 142 (844)
T ss_pred EEECCCChHHHH---HhcC-CCCcEEEEC
Confidence 889998765332 2222 456899999
No 320
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=50.25 E-value=1.1e+02 Score=23.19 Aligned_cols=46 Identities=20% Similarity=0.203 Sum_probs=33.2
Q ss_pred CCEEEEec-chHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHh
Q psy576 47 PPVLVFVQ-SKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFR 93 (159)
Q Consensus 47 ~~~lif~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~ 93 (159)
.++++||. +-..+...+.+|...|+++..+.|++. ..+......+.
T Consensus 75 ~~vvvyC~~gG~RS~~aa~~L~~~G~~v~~L~GG~~-aw~~~~~~~~~ 121 (311)
T TIGR03167 75 PQPLLYCWRGGMRSGSLAWLLAQIGFRVPRLEGGYK-AYRRFVIDQLE 121 (311)
T ss_pred CcEEEEECCCChHHHHHHHHHHHcCCCEEEecChHH-HHHHhhhhhhh
Confidence 34999995 566778888899888998888898863 34554555444
No 321
>KOG0346|consensus
Probab=49.89 E-value=36 Score=27.34 Aligned_cols=62 Identities=19% Similarity=0.207 Sum_probs=42.9
Q ss_pred CCCEEEEecchHHHHHHHHHHHhC------CCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCC-----cccccc
Q psy576 46 EPPVLVFVQSKERAQELYNELIYD------GINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTEL-----LGRGID 111 (159)
Q Consensus 46 ~~~~lif~~~~~~~~~l~~~l~~~------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~-----~~~g~~ 111 (159)
....+|.++|++-|..++..+.+. .+.+.-+.+.|++... ..+-.+...|+|+|+. +..|+.
T Consensus 93 ~~sa~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~----~~~L~d~pdIvV~TP~~ll~~~~~~~~ 165 (569)
T KOG0346|consen 93 GPSAVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVN----SVALMDLPDIVVATPAKLLRHLAAGVL 165 (569)
T ss_pred cceeEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHH----HHHHccCCCeEEeChHHHHHHHhhccc
Confidence 346999999999999988877543 3445555566666543 3455677889999974 555553
No 322
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=49.86 E-value=43 Score=24.68 Aligned_cols=36 Identities=14% Similarity=0.123 Sum_probs=28.7
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhCCCc-eEEEecCC
Q psy576 45 IEPPVLVFVQSKERAQELYNELIYDGIN-VDVIHSDR 80 (159)
Q Consensus 45 ~~~~~lif~~~~~~~~~l~~~l~~~~~~-~~~~~~~~ 80 (159)
.+.+++++|.+--.+..++-.|+..|++ +..+.|++
T Consensus 230 ~~~~ii~yC~~G~~A~~~~~~l~~~G~~~v~~y~Gs~ 266 (281)
T PRK11493 230 FDRPIIASCGSGVTAAVVVLALATLDVPNVKLYDGAW 266 (281)
T ss_pred CCCCEEEECCcHHHHHHHHHHHHHcCCCCceeeCCCH
Confidence 4568999999988888888888877774 67777764
No 323
>PF02602 HEM4: Uroporphyrinogen-III synthase HemD; InterPro: IPR003754 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents uroporphyrinogen III synthase (4.2.1.75 from EC) which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the inversion of the final pyrrole unit (ring D) of the linear tetrapyrrole molecule, linking it to the first pyrrole unit (ring A), thereby generating a large macrocyclic structure called uroporphyrinogen III []. The enzyme folds into two alpha/beta domains connected by a beta-ladder, the active site being located between the two domains []. Congenital erythropoietic porphyria (CEP) is an autosomal recessive inborn error of metabolism that results from the markedly deficient activity of uroporphyrinogen III synthase []. ; GO: 0004852 uroporphyrinogen-III synthase activity, 0033014 tetrapyrrole biosynthetic process; PDB: 1WD7_B 1WCX_A 1WCW_A 3D8R_A 3D8T_B 3D8S_A 3D8N_A 3RE1_A 3MW8_A 3P9Z_A ....
Probab=49.70 E-value=50 Score=23.19 Aligned_cols=72 Identities=15% Similarity=0.172 Sum_probs=46.3
Q ss_pred ChHHHHHHHHh-cCCCCCEEEEecchHHHHHHHHHHHhCCCceE--EEecCCCHHHHHHHHHHHhcCCeeEEEEeC
Q psy576 32 SPVQAQDETIL-LGIEPPVLVFVQSKERAQELYNELIYDGINVD--VIHSDRTQKQRDNVVRSFRTGRIWILITTE 104 (159)
Q Consensus 32 ~k~~~l~~~~~-~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~--~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~ 104 (159)
..-+.|.+.+. ...++++++++.... -..+.+.|++.|..+. .+|...+........+.+..++..+++-|+
T Consensus 102 ~~s~~L~~~l~~~~~~~~vl~~~g~~~-~~~l~~~L~~~g~~v~~~~vY~~~~~~~~~~~~~~l~~~~~~~v~ftS 176 (231)
T PF02602_consen 102 GSSEGLAELLKEQLRGKRVLILRGEGG-RPDLPEKLREAGIEVTEVIVYETPPEELSPELKEALDRGEIDAVVFTS 176 (231)
T ss_dssp SSHHHHHGGHHHCCTTEEEEEEESSSS-CHHHHHHHHHTTEEEEEEECEEEEEHHHHHHHHHHHHHTTTSEEEESS
T ss_pred CCHHHHHHHHHhhCCCCeEEEEcCCCc-cHHHHHHHHHCCCeEEEEEEeecccccchHHHHHHHHcCCCCEEEECC
Confidence 44455566655 344456777666544 4567888888775443 333335566777888889888887777665
No 324
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=48.72 E-value=34 Score=26.30 Aligned_cols=36 Identities=14% Similarity=0.176 Sum_probs=29.5
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhCCCc-eEEEecCC
Q psy576 45 IEPPVLVFVQSKERAQELYNELIYDGIN-VDVIHSDR 80 (159)
Q Consensus 45 ~~~~~lif~~~~~~~~~l~~~l~~~~~~-~~~~~~~~ 80 (159)
.+.+++++|.+-..+...+..|...|++ +..+.|++
T Consensus 313 ~~~~IvvyC~~G~rS~~Aa~~L~~~G~~nV~~L~GGi 349 (355)
T PRK05597 313 AGDEVVVYCAAGVRSAQAVAILERAGYTGMSSLDGGI 349 (355)
T ss_pred CCCeEEEEcCCCHHHHHHHHHHHHcCCCCEEEecCcH
Confidence 4457999999988888889999888875 67788876
No 325
>KOG0348|consensus
Probab=48.54 E-value=46 Score=27.49 Aligned_cols=68 Identities=24% Similarity=0.233 Sum_probs=40.6
Q ss_pred CEEEEecchHHHHHHHHHHHhCCCc-----eEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCC-------cccccccCCC
Q psy576 48 PVLVFVQSKERAQELYNELIYDGIN-----VDVIHSDRTQKQRDNVVRSFRTGRIWILITTEL-------LGRGIDFRTV 115 (159)
Q Consensus 48 ~~lif~~~~~~~~~l~~~l~~~~~~-----~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~-------~~~g~~i~~~ 115 (159)
-+||.++|++-|..+++.+++.--+ .+.+-|| |+.+-.++--...+.|||+|+= --..+++..+
T Consensus 213 ~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGG----EkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~L 288 (708)
T KOG0348|consen 213 YALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGG----EKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRL 288 (708)
T ss_pred eEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecc----cccccHHHHHhcCceEEEcCchHHHHHHhccchheeeee
Confidence 4899999999999999988765211 2233343 3333333333345789999861 1223444455
Q ss_pred cEEE
Q psy576 116 RLVV 119 (159)
Q Consensus 116 ~~vi 119 (159)
.++|
T Consensus 289 RwlV 292 (708)
T KOG0348|consen 289 RWLV 292 (708)
T ss_pred eEEE
Confidence 5555
No 326
>COG2927 HolC DNA polymerase III, chi subunit [DNA replication, recombination, and repair]
Probab=48.13 E-value=68 Score=21.39 Aligned_cols=44 Identities=16% Similarity=-0.024 Sum_probs=33.2
Q ss_pred HHHHHHhc--CCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecC
Q psy576 36 AQDETILL--GIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSD 79 (159)
Q Consensus 36 ~l~~~~~~--~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~ 79 (159)
.+..++.+ ..+.+++|-|.+..+++++-+.|.......-+.|+.
T Consensus 17 ~~c~L~~k~~~~G~rvlI~~~d~~q~e~LD~~LWt~~~~sFiPH~~ 62 (144)
T COG2927 17 AACRLAEKAWRSGWRVLIQCEDEAQAEALDEHLWTFSAESFIPHNL 62 (144)
T ss_pred HHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHhhhccchhcccCCcc
Confidence 55666653 467899999999999999999997765555555653
No 327
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=47.99 E-value=48 Score=25.76 Aligned_cols=37 Identities=14% Similarity=0.141 Sum_probs=29.9
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhCCCc--eEEEecCCC
Q psy576 45 IEPPVLVFVQSKERAQELYNELIYDGIN--VDVIHSDRT 81 (159)
Q Consensus 45 ~~~~~lif~~~~~~~~~l~~~l~~~~~~--~~~~~~~~~ 81 (159)
.+.+++++|.+-......+..|++.|++ +..+.|++.
T Consensus 331 ~~~~Ivv~C~sG~RS~~Aa~~L~~~G~~~~v~~l~GG~~ 369 (370)
T PRK05600 331 DGDNVVVYCASGIRSADFIEKYSHLGHELTLHNLPGGVN 369 (370)
T ss_pred CCCcEEEECCCChhHHHHHHHHHHcCCCCceEEeccccC
Confidence 3348999999999999999999988875 567778764
No 328
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=47.20 E-value=84 Score=20.95 Aligned_cols=45 Identities=13% Similarity=0.105 Sum_probs=34.1
Q ss_pred CEEEEecc-------hHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHH
Q psy576 48 PVLVFVQS-------KERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSF 92 (159)
Q Consensus 48 ~~lif~~~-------~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f 92 (159)
+++||+.+ -..+..+.++|+..+++.....=.++++.+.++.+..
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~ 52 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELL 52 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHh
Confidence 35677765 6888999999998888877777777777777766554
No 329
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=47.10 E-value=1.4e+02 Score=23.50 Aligned_cols=71 Identities=11% Similarity=0.123 Sum_probs=34.2
Q ss_pred ChHHHHHHHHhcCCCCCEEEEecch-H---HHHHHHHHHHhCCCceEEEec---CCCHHHHHHHHHHHhcCCeeEEEE
Q psy576 32 SPVQAQDETILLGIEPPVLVFVQSK-E---RAQELYNELIYDGINVDVIHS---DRTQKQRDNVVRSFRTGRIWILIT 102 (159)
Q Consensus 32 ~k~~~l~~~~~~~~~~~~lif~~~~-~---~~~~l~~~l~~~~~~~~~~~~---~~~~~~r~~~~~~f~~~~~~vlv~ 102 (159)
+..+.+.+.+.....++++|.+... . ..+.+.+.|.+.++.+..+.+ .-+.+.-.+..+.+++.+.+++|+
T Consensus 9 g~~~~l~~~l~~~g~~~vlivt~~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIa 86 (414)
T cd08190 9 GVTAEVGMDLKNLGARRVCLVTDPNLAQLPPVKVVLDSLEAAGINFEVYDDVRVEPTDESFKDAIAFAKKGQFDAFVA 86 (414)
T ss_pred CHHHHHHHHHHHcCCCeEEEEECcchhhcchHHHHHHHHHHcCCcEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEE
Confidence 4455555555543334555554421 1 235555556555555544332 223334445555566555555555
No 330
>TIGR00096 probable S-adenosylmethionine-dependent methyltransferase, YraL family. No member of this family is characterized, but Pfam model pfam00590 (tetrapyrrole methylase) demonstrates homology between this family and its other members, which include several methylases for the tetrapyrrole class of compound, as well as the enzyme diphthine synthase.
Probab=46.66 E-value=77 Score=23.60 Aligned_cols=65 Identities=11% Similarity=0.012 Sum_probs=39.5
Q ss_pred EEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCcccccccCCC
Q psy576 49 VLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGRGIDFRTV 115 (159)
Q Consensus 49 ~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~g~~i~~~ 115 (159)
-+|+|..+.....+...+.-. -+...+|.--..+....+++....|+. |.+.|++.--++.-|..
T Consensus 27 d~i~~EDTR~t~kLL~~~~I~-~~~~~~~~hn~~~~~~~l~~~l~~g~~-valvSDAG~P~ISDPG~ 91 (276)
T TIGR00096 27 DLFAEEDTRTSKLLLHLGIIA-TPKAFHIDNEFQEKQNLLAAKLEIGNN-IAVSSDAGPPLISDPGH 91 (276)
T ss_pred CEEEecCchhHHHHHHhcCCC-CceEEEecccHhHHHHHHHHHHHcCCc-EEEEecCCCCCcCCccH
Confidence 458888888777776665322 123344443334444555566666655 77778877777776654
No 331
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=46.12 E-value=79 Score=23.23 Aligned_cols=69 Identities=20% Similarity=0.231 Sum_probs=42.1
Q ss_pred CEEEEecchHHHHHHHHHHHhCC---CceEEEecC-CCHHHHHHHHHHHhcCCeeEEEEeCC------cccccccCCCcE
Q psy576 48 PVLVFVQSKERAQELYNELIYDG---INVDVIHSD-RTQKQRDNVVRSFRTGRIWILITTEL------LGRGIDFRTVRL 117 (159)
Q Consensus 48 ~~lif~~~~~~~~~l~~~l~~~~---~~~~~~~~~-~~~~~r~~~~~~f~~~~~~vlv~t~~------~~~g~~i~~~~~ 117 (159)
.+||.|.+--.|..+.+.|+... ..+.-+-+. +.- .+-++..+.+...|.|+|+. -.-.+.+..+..
T Consensus 128 ~~lvvs~SalRa~dl~R~l~~~~~k~~~v~KLFaKH~Kl---~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~~l~~ 204 (252)
T PF14617_consen 128 HVLVVSSSALRAADLIRALRSFKGKDCKVAKLFAKHIKL---EEQVKLLKKTRVHIAVGTPGRLSKLLENGALSLSNLKR 204 (252)
T ss_pred EEEEEcchHHHHHHHHHHHHhhccCCchHHHHHHhhccH---HHHHHHHHhCCceEEEeChHHHHHHHHcCCCCcccCeE
Confidence 48889999999999999887542 233322221 112 22344456678899999983 223445556665
Q ss_pred EE
Q psy576 118 VV 119 (159)
Q Consensus 118 vi 119 (159)
||
T Consensus 205 iv 206 (252)
T PF14617_consen 205 IV 206 (252)
T ss_pred EE
Confidence 55
No 332
>COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms]
Probab=45.34 E-value=20 Score=26.82 Aligned_cols=47 Identities=19% Similarity=0.287 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHHhC---CCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCcccccccCCCc
Q psy576 56 KERAQELYNELIYD---GINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGRGIDFRTVR 116 (159)
Q Consensus 56 ~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~g~~i~~~~ 116 (159)
.++++++...+... -...+++||++++ .+|+|..+--..=+|+|.+.
T Consensus 201 ~en~~~il~~il~~~~~~~~~GiVHGDlSe--------------fNIlV~~dg~~~vIDwPQ~v 250 (304)
T COG0478 201 VENPDEILDKILEEVRKAYRRGIVHGDLSE--------------FNILVTEDGDIVVIDWPQAV 250 (304)
T ss_pred ccCHHHHHHHHHHHHHHHHHcCccccCCch--------------heEEEecCCCEEEEeCcccc
Confidence 45555555443221 2357899998876 78999987666667777654
No 333
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=45.23 E-value=1.1e+02 Score=21.76 Aligned_cols=71 Identities=14% Similarity=0.120 Sum_probs=49.4
Q ss_pred cceeeeecCCCCChHHHHHHHHhcCCC-CCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHH
Q psy576 20 LARMYRETEGAGSPVQAQDETILLGIE-PPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSF 92 (159)
Q Consensus 20 i~~~~~~~~~~~~k~~~l~~~~~~~~~-~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f 92 (159)
+.-.|...+...-..+...++....+. ..+.||.+.. .+++.+.+...+.+..-+||..+++.-..+-+.+
T Consensus 26 iG~If~~~SpR~Vs~~~a~~i~~~v~~~~~VgVf~n~~--~~~i~~i~~~~~ld~VQlHG~e~~~~~~~l~~~~ 97 (208)
T COG0135 26 IGFIFVPKSPRYVSPEQAREIASAVPKVKVVGVFVNES--IEEILEIAEELGLDAVQLHGDEDPEYIDQLKEEL 97 (208)
T ss_pred EEEEEcCCCCCcCCHHHHHHHHHhCCCCCEEEEECCCC--HHHHHHHHHhcCCCEEEECCCCCHHHHHHHHhhc
Confidence 344455545556677778888887653 5677787754 3567777777778899999998887766655554
No 334
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=44.96 E-value=29 Score=25.33 Aligned_cols=52 Identities=10% Similarity=0.147 Sum_probs=37.7
Q ss_pred ccceeeeecCCCCChHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHhCCC
Q psy576 19 NLARMYRETEGAGSPVQAQDETILLGIEPPVLVFVQSKERAQELYNELIYDGI 71 (159)
Q Consensus 19 ~i~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~ 71 (159)
.+.-.|..+...-.-+..+.+.+ +..++.+.+|+++.+++.++.+.|++.++
T Consensus 113 ~~DavfLDlp~Pw~~i~~~~~~L-~~~gG~i~~fsP~ieQv~~~~~~L~~~gf 164 (247)
T PF08704_consen 113 DFDAVFLDLPDPWEAIPHAKRAL-KKPGGRICCFSPCIEQVQKTVEALREHGF 164 (247)
T ss_dssp SEEEEEEESSSGGGGHHHHHHHE--EEEEEEEEEESSHHHHHHHHHHHHHTTE
T ss_pred cccEEEEeCCCHHHHHHHHHHHH-hcCCceEEEECCCHHHHHHHHHHHHHCCC
Confidence 34555566665555666666666 22567888999999999999999998765
No 335
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=44.92 E-value=1.4e+02 Score=23.02 Aligned_cols=71 Identities=10% Similarity=0.081 Sum_probs=37.0
Q ss_pred ChHHHHHHHHhcCCCCCEEEEecch-H---HHHHHHHHHHhCCCceEEEec---CCCHHHHHHHHHHHhcCCeeEEEE
Q psy576 32 SPVQAQDETILLGIEPPVLVFVQSK-E---RAQELYNELIYDGINVDVIHS---DRTQKQRDNVVRSFRTGRIWILIT 102 (159)
Q Consensus 32 ~k~~~l~~~~~~~~~~~~lif~~~~-~---~~~~l~~~l~~~~~~~~~~~~---~~~~~~r~~~~~~f~~~~~~vlv~ 102 (159)
+.+..+.+.+.....++++|.+... . ..+.+.+.|++.+..+..+.+ .-+.+.-.+..+.++..+.+.+|+
T Consensus 14 g~l~~l~~~l~~~g~~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIa 91 (377)
T cd08176 14 GAIKEIGDELKNLGFKKALIVTDKGLVKIGVVEKVTDVLDEAGIDYVIYDGVKPNPTITNVKDGLAVFKKEGCDFIIS 91 (377)
T ss_pred CHHHHHHHHHHHhCCCeEEEECCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEE
Confidence 4555555555543334555554422 1 244566666665655544433 233444555666666666666664
No 336
>KOG0384|consensus
Probab=44.80 E-value=98 Score=28.26 Aligned_cols=68 Identities=19% Similarity=0.118 Sum_probs=42.5
Q ss_pred HHHHHHhcC-CCCCEEEEecc--hHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcC-----CeeEEEEeCC
Q psy576 36 AQDETILLG-IEPPVLVFVQS--KERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTG-----RIWILITTEL 105 (159)
Q Consensus 36 ~l~~~~~~~-~~~~~lif~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~-----~~~vlv~t~~ 105 (159)
.|..+.... ..+|.||.++- ....+.-...+ . .+++.++||.....+-...++.+..+ ++.+|++|-.
T Consensus 409 fl~~l~~~~~~~gpflvvvplst~~~W~~ef~~w-~-~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye 484 (1373)
T KOG0384|consen 409 FLSYLFHSLQIHGPFLVVVPLSTITAWEREFETW-T-DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYE 484 (1373)
T ss_pred HHHHHHHhhhccCCeEEEeehhhhHHHHHHHHHH-h-hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhH
Confidence 344444443 56787777663 22222222222 2 67899999988777767777777665 5789999853
No 337
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=44.53 E-value=55 Score=20.45 Aligned_cols=43 Identities=21% Similarity=0.314 Sum_probs=25.7
Q ss_pred HHHHhCCCceEEE--ecCCCHHHHHHHHHHHhcCCeeEEEEeCCc
Q psy576 64 NELIYDGINVDVI--HSDRTQKQRDNVVRSFRTGRIWILITTELL 106 (159)
Q Consensus 64 ~~l~~~~~~~~~~--~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~ 106 (159)
++|.+.++++..+ ..+.+......+.+.+++++.+++|.+..-
T Consensus 37 ~~L~~~gi~~~~v~~~~~~~~~~~~~i~~~i~~~~idlVIn~~~~ 81 (116)
T cd01423 37 DFLLENGIPVTPVAWPSEEPQNDKPSLRELLAEGKIDLVINLPSN 81 (116)
T ss_pred HHHHHcCCCceEeeeccCCCCCCchhHHHHHHcCCceEEEECCCC
Confidence 3445556554443 222111122568888999999999988653
No 338
>PRK07411 hypothetical protein; Validated
Probab=44.38 E-value=51 Score=25.77 Aligned_cols=36 Identities=11% Similarity=0.069 Sum_probs=30.1
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCC
Q psy576 45 IEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDR 80 (159)
Q Consensus 45 ~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 80 (159)
.+.+++++|.+-..+...+..|++.|++...+.|++
T Consensus 341 ~d~~IVvyC~~G~RS~~aa~~L~~~G~~~~~l~GG~ 376 (390)
T PRK07411 341 NGHRLIAHCKMGGRSAKALGILKEAGIEGTNVKGGI 376 (390)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcCCCeEEecchH
Confidence 456799999999999999999998888776677765
No 339
>cd01422 MGS Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The first part of the catalytic mechanism is believed to be similar to TIM (triosephosphate isomerase) in that both enzymes utilize DHAP to form an ene-diolate phosphate intermediate. In MGS, the second catalytic step is characterized by the elimination of phosphate and collapse of the enediolate to form methylglyoxal instead of reprotonation to form the isomer glyceraldehyde 3-phosphate, as in TIM. This is the first reaction in the methylglyoxal bypass of the Embden-Myerhoff glycolytic pathway and is believed to provide physiological benefits under non-ideal growth conditions in bacteria.
Probab=43.76 E-value=62 Score=20.42 Aligned_cols=40 Identities=15% Similarity=0.104 Sum_probs=25.6
Q ss_pred HHHh-CCCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCC
Q psy576 65 ELIY-DGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTEL 105 (159)
Q Consensus 65 ~l~~-~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~ 105 (159)
+|++ .|+++..+..+ +...+..+.+.+++|+++.+|.|+.
T Consensus 39 ~L~~~~Gi~v~~vk~~-~~~g~~~i~~~i~~g~i~~VInt~~ 79 (115)
T cd01422 39 LIQEATGLTVNRMKSG-PLGGDQQIGALIAEGEIDAVIFFRD 79 (115)
T ss_pred HHHHhhCCcEEEEecC-CCCchhHHHHHHHcCceeEEEEcCC
Confidence 3554 56666555211 1123456899999999999988864
No 340
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=43.62 E-value=1.5e+02 Score=22.95 Aligned_cols=43 Identities=19% Similarity=0.071 Sum_probs=19.4
Q ss_pred HHHHHHHHhCCCceEEEecCC---CHHHHHHHHHHHhcCCeeEEEE
Q psy576 60 QELYNELIYDGINVDVIHSDR---TQKQRDNVVRSFRTGRIWILIT 102 (159)
Q Consensus 60 ~~l~~~l~~~~~~~~~~~~~~---~~~~r~~~~~~f~~~~~~vlv~ 102 (159)
+.+...|.+.++.+..+.+.. +.+.-.+..+.++....+++|+
T Consensus 45 ~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIa 90 (383)
T cd08186 45 DKVEPALDEHGIEYVLYNKVTPNPTVDQVDEAAKLGREFGAQAVIA 90 (383)
T ss_pred HHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 445555555554444333221 3333444455555544454443
No 341
>PRK06739 pyruvate kinase; Validated
Probab=43.59 E-value=1.1e+02 Score=23.64 Aligned_cols=32 Identities=9% Similarity=0.252 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHhcCCeeEEEEeCCcccccccC
Q psy576 82 QKQRDNVVRSFRTGRIWILITTELLGRGIDFR 113 (159)
Q Consensus 82 ~~~r~~~~~~f~~~~~~vlv~t~~~~~g~~i~ 113 (159)
+..+.++++.-+.....|++||++++-=++-|
T Consensus 250 p~~Qk~Ii~~c~~~gkPvIvATqmLeSM~~~p 281 (352)
T PRK06739 250 PLLQKMMIQECNRTNTYVITATQMLQSMVDHS 281 (352)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcchHHhhccCC
Confidence 44556666666666677999999987555444
No 342
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=43.36 E-value=40 Score=26.31 Aligned_cols=36 Identities=11% Similarity=0.247 Sum_probs=29.7
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhCCC-ceEEEecCC
Q psy576 45 IEPPVLVFVQSKERAQELYNELIYDGI-NVDVIHSDR 80 (159)
Q Consensus 45 ~~~~~lif~~~~~~~~~l~~~l~~~~~-~~~~~~~~~ 80 (159)
.+.+++++|.+-..+...+..|.+.|+ ++..+.|++
T Consensus 342 ~d~~iVvyC~~G~rS~~aa~~L~~~G~~~V~~L~GG~ 378 (392)
T PRK07878 342 QDRTIVLYCKTGVRSAEALAALKKAGFSDAVHLQGGV 378 (392)
T ss_pred CCCcEEEEcCCChHHHHHHHHHHHcCCCcEEEecCcH
Confidence 456799999998888888999988887 477788876
No 343
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=43.34 E-value=1.1e+02 Score=23.50 Aligned_cols=62 Identities=11% Similarity=0.040 Sum_probs=44.4
Q ss_pred CCCEEE---EecchHHHHHHHHHHHhCCC---ceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCcc
Q psy576 46 EPPVLV---FVQSKERAQELYNELIYDGI---NVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLG 107 (159)
Q Consensus 46 ~~~~li---f~~~~~~~~~l~~~l~~~~~---~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~ 107 (159)
++.++| .+.|-.++...++.|++.|. .+..-||=++....+++.+.+.++.+.=+++|+...
T Consensus 218 Gk~VIIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~~atHglf~~~a~~~l~~~~~~~~i~~iv~Tntip 285 (332)
T PRK00553 218 NKNCLIVDDMIDTGGTVIAAAKLLKKQKAKKVCVMATHGLFNKNAIQLFDEAFKKKLIDKLFVSNSIP 285 (332)
T ss_pred CCEEEEEeccccchHHHHHHHHHHHHcCCcEEEEEEEeeecCchHHHHHHhccccCCCCEEEEeCCcc
Confidence 344555 45577778888888887754 355678888887766666666777788899998874
No 344
>PF02863 Arg_repressor_C: Arginine repressor, C-terminal domain; InterPro: IPR020899 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1B4B_B 1B4A_A 3V4G_A 1F9N_F 2P5M_A 1XXA_E 1XXC_C 1XXB_F 3LAJ_D 3BUE_D ....
Probab=42.89 E-value=35 Score=19.46 Aligned_cols=42 Identities=26% Similarity=0.175 Sum_probs=29.6
Q ss_pred cCCCCChHHHHHHHHhcC----------CCCCEEEEecchHHHHHHHHHHHh
Q psy576 27 TEGAGSPVQAQDETILLG----------IEPPVLVFVQSKERAQELYNELIY 68 (159)
Q Consensus 27 ~~~~~~k~~~l~~~~~~~----------~~~~~lif~~~~~~~~~l~~~l~~ 68 (159)
+...++--..+...+... .+.-++|.|.+.+.++.+.+.+++
T Consensus 18 ikt~pG~A~~va~~iD~~~~~~I~GtIAgdDTilvi~~~~~~a~~l~~~l~~ 69 (70)
T PF02863_consen 18 IKTLPGNAQAVAAAIDQLNLPEIFGTIAGDDTILVICRSEEDAEELEEKLKE 69 (70)
T ss_dssp EEESTTCHHHHHHHHHHHCGTTEEEEEEESSEEEEEESTTSHHHHHHHHHHT
T ss_pred EEeCCCcHHHHHHHHHhcCCcccEEEEeCCCEEEEEeCCHHHHHHHHHHHHh
Confidence 333355556666666532 245799999999999999998864
No 345
>TIGR01866 cas_Csn2 CRISPR-associated protein, Csn2 family. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas loci. The species range so far for this subtype is animal pathogens and commensals only. This protein is present in some but not all NMENI CRISPR/Cas loci.
Probab=42.84 E-value=92 Score=22.31 Aligned_cols=47 Identities=13% Similarity=0.178 Sum_probs=34.4
Q ss_pred hHHHHHHHHhcCCCCCEEEEec-----chHHHHHHHHHHHhCCCceEEEecC
Q psy576 33 PVQAQDETILLGIEPPVLVFVQ-----SKERAQELYNELIYDGINVDVIHSD 79 (159)
Q Consensus 33 k~~~l~~~~~~~~~~~~lif~~-----~~~~~~~l~~~l~~~~~~~~~~~~~ 79 (159)
+.....++.......++++|++ |.++..++.++++....++.++-..
T Consensus 149 ki~~~lki~~~l~~kki~ifvNl~~YLt~eei~el~~~i~~~~~~vlliE~~ 200 (216)
T TIGR01866 149 KCLEILQIFKELTKKKLFIFINSGAFLTKDELAELQKFISYTKLTVLFLEPR 200 (216)
T ss_pred HHHHHHHHHHHHhcCcEEEEEcHHHhCCHHHHHHHHHHHHHhcccEEEEecc
Confidence 4444444455667788999999 6678888888888888887777654
No 346
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=42.38 E-value=1.6e+02 Score=22.66 Aligned_cols=71 Identities=18% Similarity=0.167 Sum_probs=46.0
Q ss_pred CChHHHHHHHHhcCCCCCEEEEecc-hH---HHHHHHHHHHhCCCceEEEe---cCCCHHHHHHHHHHHhcCCeeEEEEe
Q psy576 31 GSPVQAQDETILLGIEPPVLVFVQS-KE---RAQELYNELIYDGINVDVIH---SDRTQKQRDNVVRSFRTGRIWILITT 103 (159)
Q Consensus 31 ~~k~~~l~~~~~~~~~~~~lif~~~-~~---~~~~l~~~l~~~~~~~~~~~---~~~~~~~r~~~~~~f~~~~~~vlv~t 103 (159)
.+..+.+.+.+... + +++|.+.. .. ..+.+...|++.++.+..+. +.-+.+.-.+..+.+++.+.+.+|+.
T Consensus 8 ~g~l~~l~~~l~~~-g-r~lvVt~~~~~~~~~~~~v~~~L~~~~i~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIai 85 (366)
T PF00465_consen 8 RGALEELGEELKRL-G-RVLVVTDPSLSKSGLVDRVLDALEEAGIEVQVFDGVGPNPTLEDVDEAAEQARKFGADCIIAI 85 (366)
T ss_dssp TTGGGGHHHHHHCT-T-EEEEEEEHHHHHHTHHHHHHHHHHHTTCEEEEEEEESSS-BHHHHHHHHHHHHHTTSSEEEEE
T ss_pred cCHHHHHHHHHHhc-C-CEEEEECchHHhCccHHHHHHHHhhCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCEEEEc
Confidence 34566777777765 3 66666654 11 24666777777777765555 44566677777888888787777764
No 347
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=42.25 E-value=1.5e+02 Score=22.56 Aligned_cols=55 Identities=20% Similarity=0.108 Sum_probs=35.3
Q ss_pred EEEEe--cchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeC
Q psy576 49 VLVFV--QSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTE 104 (159)
Q Consensus 49 ~lif~--~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~ 104 (159)
+.+|. ++.+.++++.+.+++.+.++.+-=|+-+.-+-.+.+.... +..-|.|.|.
T Consensus 53 ~~~~~~~p~~~~v~~~~~~~~~~~~D~iIavGGGs~~D~aK~ia~~~-~~p~i~VPTT 109 (347)
T cd08172 53 VLRYDGECSEENIERLAAQAKENGADVIIGIGGGKVLDTAKAVADRL-GVPVITVPTL 109 (347)
T ss_pred EEEeCCCCCHHHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHHHh-CCCEEEecCc
Confidence 44453 6777777887777777777766677777767666665543 3344555554
No 348
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=41.99 E-value=73 Score=24.08 Aligned_cols=36 Identities=19% Similarity=0.135 Sum_probs=27.5
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhCCCc-eEEEecCC
Q psy576 45 IEPPVLVFVQSKERAQELYNELIYDGIN-VDVIHSDR 80 (159)
Q Consensus 45 ~~~~~lif~~~~~~~~~l~~~l~~~~~~-~~~~~~~~ 80 (159)
.+.++++||.+--.+..++-.|+..|.+ +..+.|++
T Consensus 268 ~~~~iv~yC~sG~~A~~~~~~L~~~G~~~v~~YdGs~ 304 (320)
T PLN02723 268 LDSPIVASCGTGVTACILALGLHRLGKTDVPVYDGSW 304 (320)
T ss_pred CCCCEEEECCcHHHHHHHHHHHHHcCCCCeeEeCCCH
Confidence 4568999999987777777777777764 66777764
No 349
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=41.97 E-value=46 Score=25.78 Aligned_cols=36 Identities=14% Similarity=0.117 Sum_probs=27.8
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhCCC-ceEEEecCC
Q psy576 45 IEPPVLVFVQSKERAQELYNELIYDGI-NVDVIHSDR 80 (159)
Q Consensus 45 ~~~~~lif~~~~~~~~~l~~~l~~~~~-~~~~~~~~~ 80 (159)
++.+++++|.+-..+...+..|...|+ ++..+.|++
T Consensus 56 ~~~~IvvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~ 92 (376)
T PRK08762 56 RDREIVLICASGTRSAHAAATLRELGYTRVASVAGGF 92 (376)
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHcCCCceEeecCcH
Confidence 456799999998778888888888877 466777653
No 350
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=41.43 E-value=80 Score=19.09 Aligned_cols=63 Identities=17% Similarity=0.247 Sum_probs=38.5
Q ss_pred CEEEEecch---HH--HHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCccccc-ccCCCcE
Q psy576 48 PVLVFVQSK---ER--AQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGRGI-DFRTVRL 117 (159)
Q Consensus 48 ~~lif~~~~---~~--~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~g~-~i~~~~~ 117 (159)
++|+.|.+- +. +..+.+.+.+.++++-+.|.... +- +... ...+++++|.-+...+ ++|....
T Consensus 4 kILvvCgsG~~TS~m~~~ki~~~l~~~gi~~~v~~~~~~--e~----~~~~-~~~D~iv~t~~~~~~~~~ip~~~~ 72 (94)
T PRK10310 4 KIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQCRVN--EI----ETYM-DGVHLICTTARVDRSFGDIPLVHG 72 (94)
T ss_pred eEEEECCCchhHHHHHHHHHHHHHHHCCCeEEEEEecHH--HH----hhhc-CCCCEEEECCccccccCCCCEEEE
Confidence 578888743 22 35677888888888877775432 21 1111 3457888887666556 4665443
No 351
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=41.06 E-value=1.7e+02 Score=22.74 Aligned_cols=71 Identities=11% Similarity=0.054 Sum_probs=36.7
Q ss_pred ChHHHHHHHHhcCCCCCEEEEecch----HHHHHHHHHHHhCCCceEEEecCC---CHHHHHHHHHHHhcCCeeEEEEe
Q psy576 32 SPVQAQDETILLGIEPPVLVFVQSK----ERAQELYNELIYDGINVDVIHSDR---TQKQRDNVVRSFRTGRIWILITT 103 (159)
Q Consensus 32 ~k~~~l~~~~~~~~~~~~lif~~~~----~~~~~l~~~l~~~~~~~~~~~~~~---~~~~r~~~~~~f~~~~~~vlv~t 103 (159)
+.++.+.+++.... ++++|++... ...+.+.+.|.+.++.+..+.+.. +..+-.+..+.+++...+++|+-
T Consensus 9 g~l~~l~~~~~~~g-~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~~~~~~v~~~~~~~~~~~~D~IIai 86 (386)
T cd08191 9 GQRRQLPRLAARLG-SRALIVTDERMAGTPVFAELVQALAAAGVEVEVFDGVLPDLPRSELCDAASAAARAGPDVIIGL 86 (386)
T ss_pred CHHHHHHHHHHHcC-CeEEEEECcchhhcchHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEe
Confidence 44555555655432 5566666432 234456666666666655444332 23333444555555666666653
No 352
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=40.98 E-value=1.6e+02 Score=25.66 Aligned_cols=63 Identities=8% Similarity=-0.006 Sum_probs=43.9
Q ss_pred CCCCChHHH--HHHHHhcCCCCCEEEEecchHHHH----HHHHHHHhCCCceEEEecCCCHHHHHHHHH
Q psy576 28 EGAGSPVQA--QDETILLGIEPPVLVFVQSKERAQ----ELYNELIYDGINVDVIHSDRTQKQRDNVVR 90 (159)
Q Consensus 28 ~~~~~k~~~--l~~~~~~~~~~~~lif~~~~~~~~----~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~ 90 (159)
...++|... +...+....+.++-|.+++.--|. .+...+...|+.++.+.+++++.+|..++.
T Consensus 101 ~TGEGKTLvA~l~a~l~al~G~~v~vvT~neyLA~Rd~e~~~~~~~~LGl~vg~i~~~~~~~~r~~~y~ 169 (796)
T PRK12906 101 KTGEGKTLTATLPVYLNALTGKGVHVVTVNEYLSSRDATEMGELYRWLGLTVGLNLNSMSPDEKRAAYN 169 (796)
T ss_pred cCCCCCcHHHHHHHHHHHHcCCCeEEEeccHHHHHhhHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHhc
Confidence 333455444 455556667788888888775444 555556667999999999999998876554
No 353
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=40.89 E-value=1.8e+02 Score=22.86 Aligned_cols=72 Identities=13% Similarity=0.040 Sum_probs=41.9
Q ss_pred CChHHHHHHHHhcCCCCCEEEEecch----HHHHHHHHHHHhCCCceEEEecC---CCHHHHHHHHHHHhcCCeeEEEE
Q psy576 31 GSPVQAQDETILLGIEPPVLVFVQSK----ERAQELYNELIYDGINVDVIHSD---RTQKQRDNVVRSFRTGRIWILIT 102 (159)
Q Consensus 31 ~~k~~~l~~~~~~~~~~~~lif~~~~----~~~~~l~~~l~~~~~~~~~~~~~---~~~~~r~~~~~~f~~~~~~vlv~ 102 (159)
.+....+.+.+.....++++|.+... ..++.+.+.|...++...++.+- -+.+.-.+..+.+++.+++.+|+
T Consensus 14 ~g~l~~l~~~~~~~g~~r~liVTd~~~~~~g~~~~v~~~L~~~~i~~~if~~v~p~P~~~~v~~~~~~~~~~~~D~iIa 92 (377)
T COG1454 14 RGSLKELGEEVKRLGAKRALIVTDRGLAKLGLLDKVLDSLDAAGIEYEVFDEVEPEPTIETVEAGAEVAREFGPDTIIA 92 (377)
T ss_pred CChHHHHHHHHHhcCCCceEEEECCccccchhHHHHHHHHHhcCCeEEEecCCCCCCCHHHHHHHHHHHHhcCCCEEEE
Confidence 34555566666554445666666542 45667777777766555444332 23444455556677777777776
No 354
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=40.16 E-value=1.6e+02 Score=25.50 Aligned_cols=63 Identities=14% Similarity=-0.026 Sum_probs=43.9
Q ss_pred CCCCChHHH--HHHHHhcCCCCCEEEEecchHHHHHHHHH----HHhCCCceEEEecCCCHHHHHHHHH
Q psy576 28 EGAGSPVQA--QDETILLGIEPPVLVFVQSKERAQELYNE----LIYDGINVDVIHSDRTQKQRDNVVR 90 (159)
Q Consensus 28 ~~~~~k~~~--l~~~~~~~~~~~~lif~~~~~~~~~l~~~----l~~~~~~~~~~~~~~~~~~r~~~~~ 90 (159)
...++|... +...+....+.++-|.+.+..-|..-+++ +...|+.+..+.+.+++.+|..+++
T Consensus 99 ~TGEGKTLvA~l~a~l~AL~G~~VhvvT~NdyLA~RDae~m~~ly~~LGLsvg~i~~~~~~~err~aY~ 167 (764)
T PRK12326 99 ATGEGKTLAGAIAAAGYALQGRRVHVITVNDYLARRDAEWMGPLYEALGLTVGWITEESTPEERRAAYA 167 (764)
T ss_pred cCCCCHHHHHHHHHHHHHHcCCCeEEEcCCHHHHHHHHHHHHHHHHhcCCEEEEECCCCCHHHHHHHHc
Confidence 334555544 44555556777888888887655554444 4555899999999999998887664
No 355
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=40.12 E-value=1.7e+02 Score=22.56 Aligned_cols=72 Identities=19% Similarity=0.135 Sum_probs=34.7
Q ss_pred ChHHHHHHHHhcCCCCCEEEEecch--H--HHHHHHHHHHhCCCceEEEec---CCCHHHHHHHHHHHhcCCeeEEEEe
Q psy576 32 SPVQAQDETILLGIEPPVLVFVQSK--E--RAQELYNELIYDGINVDVIHS---DRTQKQRDNVVRSFRTGRIWILITT 103 (159)
Q Consensus 32 ~k~~~l~~~~~~~~~~~~lif~~~~--~--~~~~l~~~l~~~~~~~~~~~~---~~~~~~r~~~~~~f~~~~~~vlv~t 103 (159)
+..+.+.+++.....++++|.+... + ..+.+...|++.++.+..+.+ .-+.+.-.+..+.++..+.+.+|+-
T Consensus 12 g~l~~l~~~l~~~~~~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIai 90 (376)
T cd08193 12 GSLARLGELLAALGAKRVLVVTDPGILKAGLIDPLLASLEAAGIEVTVFDDVEADPPEAVVEAAVEAARAAGADGVIGF 90 (376)
T ss_pred CHHHHHHHHHHHcCCCeEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEe
Confidence 3445555555543334555555432 1 245555566555554433321 2234444555555655556666653
No 356
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=40.09 E-value=1.5e+02 Score=21.77 Aligned_cols=58 Identities=14% Similarity=0.175 Sum_probs=40.4
Q ss_pred CCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeC
Q psy576 47 PPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTE 104 (159)
Q Consensus 47 ~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~ 104 (159)
-.++|-|..............+.+.++..-+-+++.++..++.+.-++....++++.+
T Consensus 69 ~DvVIdfT~p~~~~~~~~~al~~g~~vVigttg~~~e~~~~l~~aA~~~g~~v~~a~N 126 (266)
T TIGR00036 69 PDVLIDFTTPEGVLNHLKFALEHGVRLVVGTTGFSEEDKQELADLAEKAGIAAVIAPN 126 (266)
T ss_pred CCEEEECCChHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHhcCCccEEEECc
Confidence 3566656666666777777777787777666678888777777766666677777654
No 357
>KOG0341|consensus
Probab=39.99 E-value=62 Score=25.65 Aligned_cols=55 Identities=20% Similarity=0.240 Sum_probs=37.1
Q ss_pred CCCEEEEecchHHHHHHHHHHHh-------CCC---ceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeC
Q psy576 46 EPPVLVFVQSKERAQELYNELIY-------DGI---NVDVIHSDRTQKQRDNVVRSFRTGRIWILITTE 104 (159)
Q Consensus 46 ~~~~lif~~~~~~~~~l~~~l~~-------~~~---~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~ 104 (159)
+.-.||.|+|++-+...++.+.. .+. .....-|+++-.+..+++. . ...|+|+|+
T Consensus 246 GP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~---~-GvHivVATP 310 (610)
T KOG0341|consen 246 GPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVR---R-GVHIVVATP 310 (610)
T ss_pred CCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHh---c-CeeEEEcCc
Confidence 34489999999988877665532 233 4556678888877665543 2 356888886
No 358
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=38.50 E-value=1.9e+02 Score=22.44 Aligned_cols=70 Identities=13% Similarity=0.047 Sum_probs=36.2
Q ss_pred ChHHHHHHHHhcCCCCCEEEEecchH-----HHHHHHHHHHhCCCceEEEecC---CCHHHHHHHHHHHhcCCeeEEEE
Q psy576 32 SPVQAQDETILLGIEPPVLVFVQSKE-----RAQELYNELIYDGINVDVIHSD---RTQKQRDNVVRSFRTGRIWILIT 102 (159)
Q Consensus 32 ~k~~~l~~~~~~~~~~~~lif~~~~~-----~~~~l~~~l~~~~~~~~~~~~~---~~~~~r~~~~~~f~~~~~~vlv~ 102 (159)
+....+.+.+... +++++|.+.... ..+.+.+.|++.++.+..+.+- -+.+.-.+..+.++..+.+.+|+
T Consensus 12 g~l~~l~~~~~~~-g~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~Iia 89 (380)
T cd08185 12 GKLNELGEEALKP-GKKALIVTGNGSSKKTGYLDRVIELLKQAGVEVVVFDKVEPNPTTTTVMEGAALAREEGCDFVVG 89 (380)
T ss_pred CHHHHHHHHHHhc-CCeEEEEeCCCchhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 4555555555542 256666664322 3345666666655555433322 23444455555666666666664
No 359
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=38.39 E-value=1.8e+02 Score=22.32 Aligned_cols=71 Identities=14% Similarity=-0.013 Sum_probs=36.2
Q ss_pred ChHHHHHHHHhcCCCCCEEEEecch-HHHHHHHHHHHhCCCceEEEecCC---CHHHHHHHHHHHhcCCeeEEEE
Q psy576 32 SPVQAQDETILLGIEPPVLVFVQSK-ERAQELYNELIYDGINVDVIHSDR---TQKQRDNVVRSFRTGRIWILIT 102 (159)
Q Consensus 32 ~k~~~l~~~~~~~~~~~~lif~~~~-~~~~~l~~~l~~~~~~~~~~~~~~---~~~~r~~~~~~f~~~~~~vlv~ 102 (159)
+..+.+.+.+.....++++|.+... .....+.+.|++.++.+..+.+-. +.+.-.+..+.++..+.+.+|+
T Consensus 9 g~l~~l~~~~~~~g~~~~livtd~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIa 83 (367)
T cd08182 9 GAIAKLPSLLKGLGGKRVLLVTGPRSAIASGLTDILKPLGTLVVVFDDVQPNPDLEDLAAGIRLLREFGPDAVLA 83 (367)
T ss_pred CHHHHHHHHHHhcCCCeEEEEeCchHHHHHHHHHHHHHcCCeEEEEcCcCCCcCHHHHHHHHHHHHhcCcCEEEE
Confidence 4455566666543334555555432 234556666665555544443321 2234445555666656666664
No 360
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=38.32 E-value=50 Score=24.37 Aligned_cols=46 Identities=11% Similarity=0.127 Sum_probs=27.5
Q ss_pred HHHHHHHhc---CCCCCEEEEecchH-HHHHHHHHHHhCCCc-eEEEecCC
Q psy576 35 QAQDETILL---GIEPPVLVFVQSKE-RAQELYNELIYDGIN-VDVIHSDR 80 (159)
Q Consensus 35 ~~l~~~~~~---~~~~~~lif~~~~~-~~~~l~~~l~~~~~~-~~~~~~~~ 80 (159)
+.+.+++.. ..+.++|+||.+.. .+..++-.|...|.+ +..+.|++
T Consensus 73 ~~~~~~~~~~Gi~~d~~VVvyc~~~~~~a~~~~~~l~~~G~~~v~~l~GG~ 123 (281)
T PRK11493 73 ETFAVAMRELGVNQDKHLVVYDEGNLFSAPRAWWMLRTFGVEKVSILAGGL 123 (281)
T ss_pred HHHHHHHHHcCCCCCCEEEEECCCCCchHHHHHHHHHHhcCCcEEEcCCCH
Confidence 344444443 35668999998643 355566666666654 55666654
No 361
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=38.09 E-value=82 Score=18.97 Aligned_cols=34 Identities=21% Similarity=0.376 Sum_probs=26.5
Q ss_pred chHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhc
Q psy576 55 SKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRT 94 (159)
Q Consensus 55 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 94 (159)
|.++|+.+..+++...+++. ++++|..+++....
T Consensus 32 t~~QA~~I~~~lr~k~inIf------n~~~r~~llkeia~ 65 (85)
T PF11116_consen 32 TKKQAEQIANILRGKNINIF------NEQERKKLLKEIAK 65 (85)
T ss_pred CHHHHHHHHHHHhcCCCCCC------CHHHHHHHHHHHHH
Confidence 67889999999988776653 67888888877654
No 362
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=37.49 E-value=43 Score=25.23 Aligned_cols=41 Identities=12% Similarity=0.131 Sum_probs=33.2
Q ss_pred HHhcCCCCCEEEEecchHHHHHHHHHHHhCCC-ceEEEecCC
Q psy576 40 TILLGIEPPVLVFVQSKERAQELYNELIYDGI-NVDVIHSDR 80 (159)
Q Consensus 40 ~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~-~~~~~~~~~ 80 (159)
......+++++.||..-=.|+....++...|+ .+.-++||.
T Consensus 166 ~~~~~~~KkVvmyCTGGIRCEKas~~m~~~GF~eVyhL~GGI 207 (308)
T COG1054 166 NLDLLKDKKVVMYCTGGIRCEKASAWMKENGFKEVYHLEGGI 207 (308)
T ss_pred HHHhccCCcEEEEcCCceeehhhHHHHHHhcchhhhcccchH
Confidence 33445667899999999999999999998887 577888874
No 363
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=37.01 E-value=2e+02 Score=22.28 Aligned_cols=71 Identities=14% Similarity=0.169 Sum_probs=34.3
Q ss_pred ChHHHHHHHHhcCCCCCEEEEecch-H---HHHHHHHHHHhCCCceEEEec---CCCHHHHHHHHHHHhcCCeeEEEE
Q psy576 32 SPVQAQDETILLGIEPPVLVFVQSK-E---RAQELYNELIYDGINVDVIHS---DRTQKQRDNVVRSFRTGRIWILIT 102 (159)
Q Consensus 32 ~k~~~l~~~~~~~~~~~~lif~~~~-~---~~~~l~~~l~~~~~~~~~~~~---~~~~~~r~~~~~~f~~~~~~vlv~ 102 (159)
+....+.+++.....++++|++... . ..+.+.+.|.+.++.+..+.+ .-+.+.-.+..+.++....+.+|+
T Consensus 9 g~~~~l~~~~~~~~~~r~livt~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIa 86 (375)
T cd08194 9 GAVDETGAVLADLGGKRPLIVTDKVMVKLGLVDKLTDSLKKEGIESAIFDDVVSEPTDESVEEGVKLAKEGGCDVIIA 86 (375)
T ss_pred CHHHHHHHHHHHcCCCeEEEEcCcchhhcchHHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEE
Confidence 4455555555533334555554321 1 234555666555555443332 223334455555566555565554
No 364
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=36.54 E-value=1.5e+02 Score=20.64 Aligned_cols=72 Identities=15% Similarity=0.112 Sum_probs=34.3
Q ss_pred ChHHHHHHHHhcC--CCCCEEEEecchHHHHHHHHHHHhCCCceEE--EecCCCHHHHHHHHHHHhcCCeeEEEEeC
Q psy576 32 SPVQAQDETILLG--IEPPVLVFVQSKERAQELYNELIYDGINVDV--IHSDRTQKQRDNVVRSFRTGRIWILITTE 104 (159)
Q Consensus 32 ~k~~~l~~~~~~~--~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~--~~~~~~~~~r~~~~~~f~~~~~~vlv~t~ 104 (159)
...+.|.+++... .+.++++.+ +...-..+.+.|.+.|..+.. ++............+.+..+...+++-|+
T Consensus 106 ~~~~~L~~~i~~~~~~~~~il~~~-g~~~~~~l~~~L~~~g~~v~~~~~Y~~~~~~~~~~~~~~l~~~~~~~iiftS 181 (239)
T cd06578 106 GDSEGLLELLELQDGKGKRILRPR-GGRAREDLAEALRERGAEVDEVEVYRTVPPDLDAELLELLEEGAIDAVLFTS 181 (239)
T ss_pred cCHHHHHHHHHhcCCCCCEEEEEc-CcchhHHHHHHHHHCCCEEEEEEEEEEECCCCcHHHHHHHHcCCCcEEEEeC
Confidence 3444555555543 334444444 444455777777776554332 22211111113345556666654555443
No 365
>PRK08811 uroporphyrinogen-III synthase; Validated
Probab=36.52 E-value=1.6e+02 Score=21.64 Aligned_cols=69 Identities=10% Similarity=0.013 Sum_probs=36.8
Q ss_pred HHHHHHH-HhcCCCCCEEEEecchHHHHHHHHHHHhCCCceE--EEecCCCHHHHHHHHHHH-hcCCeeEEEEe
Q psy576 34 VQAQDET-ILLGIEPPVLVFVQSKERAQELYNELIYDGINVD--VIHSDRTQKQRDNVVRSF-RTGRIWILITT 103 (159)
Q Consensus 34 ~~~l~~~-~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~--~~~~~~~~~~r~~~~~~f-~~~~~~vlv~t 103 (159)
-+-|.++ +....+++++++..... -+.+.+.|.+.|..+. .+|..............+ .++...+++-|
T Consensus 125 se~Ll~l~~~~~~g~~vLi~rg~~g-r~~L~~~L~~~G~~V~~~~vY~~~~~~~~~~~~~~l~~~~~~d~i~ft 197 (266)
T PRK08811 125 SEGLLALPLAQAPLQAVGLITAPGG-RGLLAPTLQQRGARILRADVYQRVPLRLRASTLAALSRAAPRSVLALS 197 (266)
T ss_pred cHHHHhChhhhCCCCEEEEEeCCCc-HHHHHHHHHHCCCEEeEEEEEeeeCCCCCHHHHHHHHHhCCCCEEEEC
Confidence 4444444 33334555665555443 3788889988876553 345433222222334444 45666666665
No 366
>PHA02558 uvsW UvsW helicase; Provisional
Probab=36.34 E-value=2.3e+02 Score=22.92 Aligned_cols=47 Identities=11% Similarity=0.036 Sum_probs=31.9
Q ss_pred eeeecCCCCChHHHHHHHHh---cCCCCCEEEEecchHHHHHHHHHHHhC
Q psy576 23 MYRETEGAGSPVQAQDETIL---LGIEPPVLVFVQSKERAQELYNELIYD 69 (159)
Q Consensus 23 ~~~~~~~~~~k~~~l~~~~~---~~~~~~~lif~~~~~~~~~l~~~l~~~ 69 (159)
.....+...+|......+.. .....++||++++++-+....+.+.+.
T Consensus 132 ~il~apTGsGKT~i~~~l~~~~~~~~~~~vLilvpt~eL~~Q~~~~l~~~ 181 (501)
T PHA02558 132 RLLNLPTSAGKSLIQYLLSRYYLENYEGKVLIIVPTTSLVTQMIDDFVDY 181 (501)
T ss_pred eEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHHHHHHHHHh
Confidence 34445555777776544422 223448999999999999988888654
No 367
>PF13245 AAA_19: Part of AAA domain
Probab=36.19 E-value=77 Score=18.30 Aligned_cols=37 Identities=22% Similarity=0.174 Sum_probs=27.2
Q ss_pred CCChHHHHHHHHhcC------CCCCEEEEecchHHHHHHHHHH
Q psy576 30 AGSPVQAQDETILLG------IEPPVLVFVQSKERAQELYNEL 66 (159)
Q Consensus 30 ~~~k~~~l~~~~~~~------~~~~~lif~~~~~~~~~l~~~l 66 (159)
-.+|-..+.+.+... .++++++.+.+..-++++.+.+
T Consensus 20 GtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 20 GTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 367776655554321 2667999999999999999988
No 368
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=35.71 E-value=24 Score=20.25 Aligned_cols=14 Identities=36% Similarity=0.558 Sum_probs=10.1
Q ss_pred HHHHHHHHh-hccCC
Q psy576 127 AISYIHRIG-RAGRG 140 (159)
Q Consensus 127 ~~~~~q~~G-R~~R~ 140 (159)
-.++.||+| ++||.
T Consensus 35 ~~Ev~Qr~GkkiGRD 49 (75)
T COG4064 35 NGEVYQRIGKKIGRD 49 (75)
T ss_pred HHHHHHHHHHHhcch
Confidence 566788888 67764
No 369
>cd05402 NT_PAP_TUTase Nucleotidyltransferase (NT) domain of poly(A) polymerases and terminal uridylyl transferases. Poly(A) polymerases (PAPs) catalyze mRNA poly(A) tail synthesis, and terminal uridylyl transferases (TUTases) uridylate RNA. PAPs in this subgroup include human PAP alpha, mouse testis-specific cytoplasmic PAP beta, human nuclear PAP gamma, Saccharomyces cerevisiae PAP1, TRF4 and-5, Schizosaccharomyces pombe caffeine-induced death proteins -1, and -14, Caenorhabditis elegans Germ Line Development-2, and Chlamydomonas reinhardtii MUT68. This family also includes human U6 snRNA-specific TUTase1, and Trypanosoma brucei 3'-TUTase-1,-2, and 4. This family belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more distal carboxylate, coordinate two divalent metal cations involved in a two-metal ion mechanism of nucleotide addition. For the majority of proteins in this family, these carboxyla
Probab=35.57 E-value=1.1e+02 Score=18.84 Aligned_cols=42 Identities=7% Similarity=0.094 Sum_probs=26.7
Q ss_pred EEEeCCcccccccCCCcEEEEecCC-CCHHHHHHHHhhccCCC
Q psy576 100 LITTELLGRGIDFRTVRLVVNYDFP-SSAISYIHRIGRAGRGG 141 (159)
Q Consensus 100 lv~t~~~~~g~~i~~~~~vi~~~~~-~~~~~~~q~~GR~~R~g 141 (159)
+..+...+.+....++++++.+..+ .+....++.+.+..|..
T Consensus 24 ~fGS~~~g~~~~~SDiDl~i~~~~~~~~~~~~l~~l~~~l~~~ 66 (114)
T cd05402 24 PFGSYVTGLGLPGSDIDLCLLGPNHRVDREDFLRKLAKLLKKS 66 (114)
T ss_pred EecccccCCCCCCCCeeEEEEeCCCCccHHHHHHHHHHHHHhC
Confidence 3344444444444567777777655 57778888888777654
No 370
>PF10657 RC-P840_PscD: Photosystem P840 reaction centre protein PscD; InterPro: IPR019608 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. The photosynthetic reaction centres (RCs) of aerotolerant organisms contain a heterodimeric core, built up of two strongly homologous polypeptides each of which contributes five transmembrane peptide helices to hold a pseudo-symmetric double set of redox components. Two molecules of PscD are housed within a subunit. PscD may be involved in stabilising the PscB component since it is found to co-precipitate with FMO (Fenna-Mathews-Olson BChl a-protein) and PscB. It may also be involved in the interaction with ferredoxin [].
Probab=35.54 E-value=63 Score=20.84 Aligned_cols=49 Identities=16% Similarity=0.323 Sum_probs=33.3
Q ss_pred EEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCcccccccCC------CcEEEEec
Q psy576 74 DVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGRGIDFRT------VRLVVNYD 122 (159)
Q Consensus 74 ~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~g~~i~~------~~~vi~~~ 122 (159)
..-.|.-.-.--.+++....+|++.+.|.|.--..++|++. -..||.+|
T Consensus 52 ~pasGrrkLspt~emi~~l~~geIel~VLttqpDIai~l~~kVldnEnRYViDFD 106 (144)
T PF10657_consen 52 SPASGRRKLSPTPEMIDKLISGEIELFVLTTQPDIAINLQQKVLDNENRYVIDFD 106 (144)
T ss_pred ecCCCccccCCcHHHHHHHhcCceEEEEEccCCCeeechhhhhhcccceEEEecc
Confidence 33344433334467899999999999998877666777752 34777765
No 371
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=35.41 E-value=1.8e+02 Score=21.32 Aligned_cols=25 Identities=20% Similarity=0.234 Sum_probs=11.3
Q ss_pred HhcCCeeEEEEeCCcccccccCCCc
Q psy576 92 FRTGRIWILITTELLGRGIDFRTVR 116 (159)
Q Consensus 92 f~~~~~~vlv~t~~~~~g~~i~~~~ 116 (159)
|+.+..-+.|.|...-=|+--|...
T Consensus 96 ~~~~~p~isVPTa~S~DG~aS~~As 120 (250)
T PF13685_consen 96 FELGIPFISVPTAASHDGFASPVAS 120 (250)
T ss_dssp HHHT--EEEEES--SSGGGTSSEEE
T ss_pred HhcCCCEEEeccccccccccCCCee
Confidence 3445555666776655555544433
No 372
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=34.74 E-value=2e+02 Score=21.92 Aligned_cols=59 Identities=8% Similarity=0.094 Sum_probs=41.5
Q ss_pred CCCCEEE---EecchHHHHHHHHHHHhCCC---ceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCcc
Q psy576 45 IEPPVLV---FVQSKERAQELYNELIYDGI---NVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLG 107 (159)
Q Consensus 45 ~~~~~li---f~~~~~~~~~l~~~l~~~~~---~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~ 107 (159)
.++.+|| .+.|-.++.+.++.|++.|. .+...||=++... ++.+.++-+.=+++|+...
T Consensus 216 ~Gr~viIVDDIidTG~Tl~~aa~~Lk~~GA~~V~~~~tHglf~~~a----~~~l~~~~i~~iv~Tdti~ 280 (320)
T PRK02269 216 KGKKCILIDDMIDTAGTICHAADALAEAGATEVYASCTHPVLSGPA----LDNIQKSAIEKLVVLDTIY 280 (320)
T ss_pred CCCEEEEEeeecCcHHHHHHHHHHHHHCCCCEEEEEEECcccCchH----HHHHHhCCCCEEEEeCCCC
Confidence 4455665 56677888888999988754 4567798887754 4445566677788888874
No 373
>PRK09281 F0F1 ATP synthase subunit alpha; Validated
Probab=34.69 E-value=2.6e+02 Score=22.94 Aligned_cols=73 Identities=14% Similarity=0.087 Sum_probs=33.4
Q ss_pred CChHHHHHHHHhcCCCCCEE-EEec---chHHHHHHHHHHHhCCC--ceEEE--ecCCCHHHHHH-------HHHHHhcC
Q psy576 31 GSPVQAQDETILLGIEPPVL-VFVQ---SKERAQELYNELIYDGI--NVDVI--HSDRTQKQRDN-------VVRSFRTG 95 (159)
Q Consensus 31 ~~k~~~l~~~~~~~~~~~~l-if~~---~~~~~~~l~~~l~~~~~--~~~~~--~~~~~~~~r~~-------~~~~f~~~ 95 (159)
-+|..+....+....+..++ ||+. ..+++.++.+.+...+. +..++ +++.++-+|.. +-+-|+..
T Consensus 173 ~GKt~lal~~i~~~~~~dv~~V~~~IGer~~ev~e~~~~~~~~~~l~~tvvv~atsd~p~~~r~~a~~~a~tiAEyfrd~ 252 (502)
T PRK09281 173 TGKTAIAIDTIINQKGKDVICIYVAIGQKASTVAQVVRKLEEHGAMEYTIVVAATASDPAPLQYLAPYAGCAMGEYFMDN 252 (502)
T ss_pred CCchHHHHHHHHHhcCCCeEEEEEEecCChHHHHHHHHHHhhcCCccceEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHc
Confidence 45665523344332344443 6664 44555566665555432 22222 44445555532 33445554
Q ss_pred CeeEEEEe
Q psy576 96 RIWILITT 103 (159)
Q Consensus 96 ~~~vlv~t 103 (159)
..+||+--
T Consensus 253 G~~VLli~ 260 (502)
T PRK09281 253 GKDALIVY 260 (502)
T ss_pred CCCEEEEe
Confidence 34455433
No 374
>cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E. coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative decarboxylation of pyruvate and the subsequent acetylation of coenzyme A to acetyl-CoA. The E1 component of PDC catalyzes the first step of the multistep process, using TPP and a divalent cation as cofactors. E. coli PDC is a homodimeric enzyme.
Probab=34.54 E-value=2.3e+02 Score=22.35 Aligned_cols=61 Identities=10% Similarity=0.027 Sum_probs=36.8
Q ss_pred CCHHHHHHHHHHHh--cCCeeEEEEeCCcccccc-cCCCcEEEEecCCCCHHHHHHHHhhccCC
Q psy576 80 RTQKQRDNVVRSFR--TGRIWILITTELLGRGID-FRTVRLVVNYDFPSSAISYIHRIGRAGRG 140 (159)
Q Consensus 80 ~~~~~r~~~~~~f~--~~~~~vlv~t~~~~~g~~-i~~~~~vi~~~~~~~~~~~~q~~GR~~R~ 140 (159)
-+..+..+.++... +++..+|||....+.|+. ...-+.-.|...+.+..++.+.....|..
T Consensus 290 hD~~~i~~A~~~a~~~~~kPt~Iia~TikG~G~~~~~e~~~~~h~~~~~~~~e~~~~~~~lg~~ 353 (386)
T cd02017 290 HDPRKVYAAYKKAVEHKGKPTVILAKTIKGYGLGAAGEGRNHAHQVKKMTEDELKALRDRFGIP 353 (386)
T ss_pred CCHHHHHHHHHHHHhCCCCCeEEEEeCeecCCCChhccCCcchhcCCCCCHHHHHHHHHHcCCC
Confidence 34444444444433 367899999999999986 22333233333556777777766555543
No 375
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=34.16 E-value=75 Score=19.54 Aligned_cols=37 Identities=19% Similarity=0.187 Sum_probs=20.1
Q ss_pred CCCCEEEEec-chHHHH----HHHHHHHh-----CCCceEEEecCCC
Q psy576 45 IEPPVLVFVQ-SKERAQ----ELYNELIY-----DGINVDVIHSDRT 81 (159)
Q Consensus 45 ~~~~~lif~~-~~~~~~----~l~~~l~~-----~~~~~~~~~~~~~ 81 (159)
...+++++|. +...+. .+.+.+.. ...++..+.|++.
T Consensus 61 ~~~~iv~yC~~~~~r~~~aa~~l~~~~~~~~~~~G~~~v~~l~gG~~ 107 (113)
T cd01531 61 KKDTVVFHCALSQVRGPSAARKFLRYLDEEDLETSKFEVYVLHGGFN 107 (113)
T ss_pred CCCeEEEEeecCCcchHHHHHHHHHHHHHhccccCCCeEEEEcChHH
Confidence 3467888997 322222 33333322 2346788888763
No 376
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=33.74 E-value=1.6e+02 Score=20.57 Aligned_cols=46 Identities=20% Similarity=0.330 Sum_probs=28.5
Q ss_pred CCEEEEecch-----HHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHh
Q psy576 47 PPVLVFVQSK-----ERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFR 93 (159)
Q Consensus 47 ~~~lif~~~~-----~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~ 93 (159)
+++++|+.+. ..+.++.+.|++.++.+.++.=|.. .+..+.++.|.
T Consensus 108 ~rivi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~~G~~-~~~~~~l~~~~ 158 (187)
T cd01452 108 QRIVAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIINFGEI-DDNTEKLTAFI 158 (187)
T ss_pred ceEEEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEEeCCC-CCCHHHHHHHH
Confidence 4678887766 4555677778888887666644433 33344555553
No 377
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=33.69 E-value=1.1e+02 Score=20.56 Aligned_cols=39 Identities=21% Similarity=0.177 Sum_probs=27.4
Q ss_pred CChHH-HHHHHHhc--CCCCCEEEEecchHHHHHHHHHHHhC
Q psy576 31 GSPVQ-AQDETILL--GIEPPVLVFVQSKERAQELYNELIYD 69 (159)
Q Consensus 31 ~~k~~-~l~~~~~~--~~~~~~lif~~~~~~~~~l~~~l~~~ 69 (159)
.+|.. .|.+++.. ..+.++||..+|+-.++++.+.|+..
T Consensus 15 aGKTr~vlp~~~~~~i~~~~rvLvL~PTRvva~em~~aL~~~ 56 (148)
T PF07652_consen 15 AGKTRRVLPEIVREAIKRRLRVLVLAPTRVVAEEMYEALKGL 56 (148)
T ss_dssp SSTTTTHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHTTTS
T ss_pred CCCcccccHHHHHHHHHccCeEEEecccHHHHHHHHHHHhcC
Confidence 34443 46666642 36788999999999999999999754
No 378
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=33.42 E-value=2.3e+02 Score=21.93 Aligned_cols=71 Identities=13% Similarity=0.061 Sum_probs=32.7
Q ss_pred ChHHHHHHHHhcCCCCCEEEEecch-H---HHHHHHHHHHhCCCceEEEecC---CCHHHHHHHHHHHhcCCeeEEEE
Q psy576 32 SPVQAQDETILLGIEPPVLVFVQSK-E---RAQELYNELIYDGINVDVIHSD---RTQKQRDNVVRSFRTGRIWILIT 102 (159)
Q Consensus 32 ~k~~~l~~~~~~~~~~~~lif~~~~-~---~~~~l~~~l~~~~~~~~~~~~~---~~~~~r~~~~~~f~~~~~~vlv~ 102 (159)
+.++.|.+.+.....++++|.+... . ..+.+.+.|.+.++.+..+.+- -+.+.-.+..+.++..+.+++|+
T Consensus 12 g~l~~l~~~l~~~g~~~~lvvt~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIa 89 (374)
T cd08189 12 GSLAQLPAAISQLGVKKVLIVTDKGLVKLGLLDKVLEALEGAGIEYAVYDGVPPDPTIENVEAGLALYRENGCDAILA 89 (374)
T ss_pred CHHHHHHHHHHhcCCCeEEEEeCcchhhcccHHHHHHHHHhcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEE
Confidence 4445555555543334555554321 1 2344555555555544433222 22333445555555555555554
No 379
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=33.05 E-value=2.2e+02 Score=24.51 Aligned_cols=82 Identities=17% Similarity=0.256 Sum_probs=47.7
Q ss_pred CEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeC---------------Cccccccc
Q psy576 48 PVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTE---------------LLGRGIDF 112 (159)
Q Consensus 48 ~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~---------------~~~~g~~i 112 (159)
.+++--.....++.+++.|- +.-+|+++.|+++.++++.++.....|...-| ..+.|-|+
T Consensus 556 ~~mLTGDn~~~A~~iA~~lG-----Id~v~AellPedK~~~V~~l~~~g~~VamVGDGINDAPALA~AdVGiAmG~GtDv 630 (713)
T COG2217 556 VVMLTGDNRRTAEAIAKELG-----IDEVRAELLPEDKAEIVRELQAEGRKVAMVGDGINDAPALAAADVGIAMGSGTDV 630 (713)
T ss_pred EEEEcCCCHHHHHHHHHHcC-----hHhheccCCcHHHHHHHHHHHhcCCEEEEEeCCchhHHHHhhcCeeEeecCCcHH
Confidence 34444445566666666552 34667788999999999999864333333222 12224443
Q ss_pred --CCCcEEEEecCCCCHHHHHHHH
Q psy576 113 --RTVRLVVNYDFPSSAISYIHRI 134 (159)
Q Consensus 113 --~~~~~vi~~~~~~~~~~~~q~~ 134 (159)
...++|+.-+.+.+.....+..
T Consensus 631 A~eaADvvL~~~dL~~v~~ai~ls 654 (713)
T COG2217 631 AIEAADVVLMRDDLSAVPEAIDLS 654 (713)
T ss_pred HHHhCCEEEecCCHHHHHHHHHHH
Confidence 4677777766555555444433
No 380
>cd01027 TOPRIM_RNase_M5_like TOPRIM_ RNase M5_like: The topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain found in Ribonuclease M5: (RNase M5) and other small primase-like proteins from bacteria and archaea. RNase M5 catalyzes the maturation of 5S rRNA in low G+C Gram-positive bacteria. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function.
Probab=32.97 E-value=1.1e+02 Score=18.02 Aligned_cols=58 Identities=14% Similarity=0.128 Sum_probs=34.3
Q ss_pred EEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCcccccc
Q psy576 49 VLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGRGID 111 (159)
Q Consensus 49 ~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~g~~ 111 (159)
.+|.+.....+..+.+..-. ..+...+|..-..+..+.+... ...|+++|+.-..|-.
T Consensus 3 ~vIiVEG~~D~~~l~~~g~~--~~~i~t~Gt~~~~~~~~~l~~~---~~~VIiltD~D~aG~~ 60 (81)
T cd01027 3 EVIIVEGKNDTESLKKLGIE--AEIIETNGSIINKETIELIKKA---YRGVIILTDPDRKGEK 60 (81)
T ss_pred eEEEEEchHHHHHHHHhCCC--ccEEEECCCcCCHHHHHHHHHh---CCEEEEEECCCHHHHH
Confidence 45777888877777766431 2355555554443444444444 4568888876555543
No 381
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=32.65 E-value=2.7e+02 Score=22.57 Aligned_cols=73 Identities=16% Similarity=0.120 Sum_probs=35.8
Q ss_pred CChHHHHHHHHhcCC--CCCEEEEecch---HHHHHHHHHHHhCC-C-c--eEEEecCCCHHHHHH-------HHHHHhc
Q psy576 31 GSPVQAQDETILLGI--EPPVLVFVQSK---ERAQELYNELIYDG-I-N--VDVIHSDRTQKQRDN-------VVRSFRT 94 (159)
Q Consensus 31 ~~k~~~l~~~~~~~~--~~~~lif~~~~---~~~~~l~~~l~~~~-~-~--~~~~~~~~~~~~r~~-------~~~~f~~ 94 (159)
-+|-.++..+..... ..-++||+--- +++.++.+.+...+ . + +..-++++++-+|.. +-+.|+.
T Consensus 155 vGKt~Ll~~i~~~~~~~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~~~a~tiAEyfrd 234 (463)
T PRK09280 155 VGKTVLIQELINNIAKEHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVALTGLTMAEYFRD 234 (463)
T ss_pred CChhHHHHHHHHHHHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 567776666654321 12355665543 34444444443332 1 1 233456677777754 3455655
Q ss_pred -CCeeEEEEe
Q psy576 95 -GRIWILITT 103 (159)
Q Consensus 95 -~~~~vlv~t 103 (159)
...+||+--
T Consensus 235 ~~G~~VLll~ 244 (463)
T PRK09280 235 VEGQDVLLFI 244 (463)
T ss_pred hcCCceEEEe
Confidence 444555543
No 382
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=32.31 E-value=2.5e+02 Score=22.03 Aligned_cols=73 Identities=14% Similarity=0.054 Sum_probs=44.5
Q ss_pred CChHHHHHHHHhcCCCCCEEEEecc-hH---HHHHHHHHHHhCCCceEEEec---CCCHHHHHHHHHHHhcCCeeEEEEe
Q psy576 31 GSPVQAQDETILLGIEPPVLVFVQS-KE---RAQELYNELIYDGINVDVIHS---DRTQKQRDNVVRSFRTGRIWILITT 103 (159)
Q Consensus 31 ~~k~~~l~~~~~~~~~~~~lif~~~-~~---~~~~l~~~l~~~~~~~~~~~~---~~~~~~r~~~~~~f~~~~~~vlv~t 103 (159)
.+....|.+.+.....++++|.+.. .. ..+.+.+.|++.++.+..+.+ ..+.+.-.+..+.++..+.+++|+-
T Consensus 34 ~g~~~~l~~~~~~~g~~~~lvv~~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~P~~~~v~~~~~~~r~~~~D~Iiav 113 (395)
T PRK15454 34 PGAVSSCGQQAQTRGLKHLFVMADSFLHQAGMTAGLTRSLAVKGIAMTLWPCPVGEPCITDVCAAVAQLRESGCDGVIAF 113 (395)
T ss_pred cCHHHHHHHHHHhcCCCEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCcCEEEEe
Confidence 4667777777765333556655542 22 246778888777776554422 2233555667777778888888764
No 383
>PF09711 Cas_Csn2: CRISPR-associated protein (Cas_Csn2); InterPro: IPR010146 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents the Csn2 family of Cas proteins, which are found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas loci. The species range so far for this subtype is animal pathogens and commensals only. This protein is present in some but not all NMENI CRISPR/Cas loci.; PDB: 3TOC_A 3QHQ_A 3S5U_C.
Probab=32.21 E-value=1.8e+02 Score=20.37 Aligned_cols=38 Identities=34% Similarity=0.479 Sum_probs=28.4
Q ss_pred hcCCCCCEEEEec-----chHHHHHHHHHHHhCCCceEEEecC
Q psy576 42 LLGIEPPVLVFVQ-----SKERAQELYNELIYDGINVDVIHSD 79 (159)
Q Consensus 42 ~~~~~~~~lif~~-----~~~~~~~l~~~l~~~~~~~~~~~~~ 79 (159)
....+.+++||++ |.++..++.+++.....++.++-.+
T Consensus 126 ~~L~~kKllvfVNl~~YLT~eEl~el~e~i~~~~i~VL~IE~r 168 (188)
T PF09711_consen 126 SELLKKKLLVFVNLRSYLTEEELQELYEYIKYNKIKVLFIENR 168 (188)
T ss_dssp HH-TT--EEEEESGGGGS-HHHHHHHHHHHHHTTSEEEEEESS
T ss_pred HHHcCCCEEEEEchHHhcCHHHHHHHHHHHHHhCCeEEEEecc
Confidence 3557788999999 6678889999998888888888864
No 384
>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A ....
Probab=32.12 E-value=1.9e+02 Score=22.18 Aligned_cols=79 Identities=13% Similarity=0.147 Sum_probs=49.2
Q ss_pred HHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhc--CCeeEEEEeCCcccccccCCCcEEEEecCCCCHHHHHHHHhh
Q psy576 59 AQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRT--GRIWILITTELLGRGIDFRTVRLVVNYDFPSSAISYIHRIGR 136 (159)
Q Consensus 59 ~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~--~~~~vlv~t~~~~~g~~i~~~~~vi~~~~~~~~~~~~q~~GR 136 (159)
.+.+.+.++..|+++..+-.+-+.++..+.++..+. ++..+|++..+.+.|+..-.-+.- ..+.|.+.+++.+..-.
T Consensus 195 ~~~~~~k~~a~Gw~v~~v~dGhd~~~i~~A~~~a~~~~~kP~~Ii~~TvkG~G~~~~e~~~~-~Hg~~l~~ee~~~~k~~ 273 (332)
T PF00456_consen 195 SEDIAKKFEAFGWNVIEVCDGHDVEAIYAAIEEAKASKGKPTVIIARTVKGKGVPFMEGTAK-WHGSPLTEEEVEQAKKE 273 (332)
T ss_dssp HSHHHHHHHHTT-EEEEEEETTBHHHHHHHHHHHHHSTSS-EEEEEEE-TTTTSTTTTTSGG-GTSS--HHHHHHHHHHH
T ss_pred chHHHHHHHHhhhhhcccccCcHHHHHHHHHHHHHhcCCCCceeecceEEecCchhhcccch-hhccCCcHHHHHHHHHH
Confidence 456788888999999888445567777777776654 688999999999999954222222 23345556666665544
Q ss_pred cc
Q psy576 137 AG 138 (159)
Q Consensus 137 ~~ 138 (159)
.|
T Consensus 274 lg 275 (332)
T PF00456_consen 274 LG 275 (332)
T ss_dssp TT
T ss_pred cC
Confidence 44
No 385
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=32.10 E-value=93 Score=21.43 Aligned_cols=33 Identities=27% Similarity=0.265 Sum_probs=19.7
Q ss_pred CCCCEEEEecchH--HHHHHHHHHHhCCCceEEEe
Q psy576 45 IEPPVLVFVQSKE--RAQELYNELIYDGINVDVIH 77 (159)
Q Consensus 45 ~~~~~lif~~~~~--~~~~l~~~l~~~~~~~~~~~ 77 (159)
...++++|++... ++.++++.|.+.++++..+.
T Consensus 81 ~~DRVllfs~~~~~~e~~~~a~~L~~~gi~~v~Vs 115 (172)
T PF10740_consen 81 ETDRVLLFSPFSTDEEAVALAKQLIEQGIPFVGVS 115 (172)
T ss_dssp TT-EEEEEES-S--HHHHHHHHHHHHHT--EEEEE
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHHHCCCCEEEEE
Confidence 3467888888554 46667777877777766555
No 386
>PRK09375 quinolinate synthetase; Provisional
Probab=31.57 E-value=1.2e+02 Score=23.20 Aligned_cols=50 Identities=8% Similarity=0.078 Sum_probs=32.1
Q ss_pred cCCCCCEEEEecchHHHHHHHHHHHhC---CCceEEEecCCCHHHHHHHHHHH
Q psy576 43 LGIEPPVLVFVQSKERAQELYNELIYD---GINVDVIHSDRTQKQRDNVVRSF 92 (159)
Q Consensus 43 ~~~~~~~lif~~~~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~r~~~~~~f 92 (159)
.....+.|+|++...-++.+.....+. -.....+|..++.++-.+..+++
T Consensus 153 ~~~~~~~IlF~PD~~Lg~~v~~l~~k~vilw~G~C~vH~~~~~e~i~~~r~~~ 205 (319)
T PRK09375 153 ALPQGKKILFLPDQHLGRYVAKQTGADIILWPGHCIVHEEFTAEDLERLRAEY 205 (319)
T ss_pred ccCCCCeEEEeCchHHHHHHHHcCCCEEEccCCcchhccCcCHHHHHHHHHHC
Confidence 334567899999988888875542221 01245667777777766666665
No 387
>KOG2792|consensus
Probab=31.53 E-value=2.2e+02 Score=21.20 Aligned_cols=101 Identities=16% Similarity=0.100 Sum_probs=55.0
Q ss_pred CChHHHHHHHHhcCCCC---CEEEEec-chHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhc----C----Cee
Q psy576 31 GSPVQAQDETILLGIEP---PVLVFVQ-SKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRT----G----RIW 98 (159)
Q Consensus 31 ~~k~~~l~~~~~~~~~~---~~lif~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~----~----~~~ 98 (159)
-+|+....+.++...+- |+-|-|+ -++..+.+++++.+...++.-++| +.++-..+-+.|+- | +-+
T Consensus 159 LeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~eF~pkllGLTG--T~eqvk~vak~yRVYfs~gp~d~~~D 236 (280)
T KOG2792|consen 159 LEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVSEFHPKLLGLTG--TTEQVKQVAKKYRVYFSTGPKDEDQD 236 (280)
T ss_pred HHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHHhcChhhhcccC--CHHHHHHHHHHhEEeeccCCCCCCCC
Confidence 34554455555543322 4555443 566778888888887777788888 45666666666632 1 234
Q ss_pred EEEEeCCcccccccCCCcEEEEecCCCCHHHHHHHH
Q psy576 99 ILITTELLGRGIDFRTVRLVVNYDFPSSAISYIHRI 134 (159)
Q Consensus 99 vlv~t~~~~~g~~i~~~~~vi~~~~~~~~~~~~q~~ 134 (159)
.||-+++.---+| |+-..|=-|+.-.+.++..+-+
T Consensus 237 YlVDHSi~mYLid-Peg~Fvd~~GrN~~~~~~~~~I 271 (280)
T KOG2792|consen 237 YLVDHSIFMYLID-PEGEFVDYYGRNYDADELADSI 271 (280)
T ss_pred eeeeeeEEEEEEC-CCcceehhhcccCCHHHHHHHH
Confidence 5555554443333 3333333344444555555444
No 388
>KOG0353|consensus
Probab=31.19 E-value=2.2e+02 Score=22.65 Aligned_cols=60 Identities=12% Similarity=0.178 Sum_probs=43.8
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhc--CCeeEEEEeC
Q psy576 45 IEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRT--GRIWILITTE 104 (159)
Q Consensus 45 ~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~--~~~~vlv~t~ 104 (159)
.++-.||.|+-.+-++.---.|++.|+....+....+.++-..+...+.+ ++++++-.|+
T Consensus 133 adg~alvi~plislmedqil~lkqlgi~as~lnansske~~k~v~~~i~nkdse~kliyvtp 194 (695)
T KOG0353|consen 133 ADGFALVICPLISLMEDQILQLKQLGIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTP 194 (695)
T ss_pred cCCceEeechhHHHHHHHHHHHHHhCcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecH
Confidence 45678999998888776666677888888888887777777777777654 4566655554
No 389
>KOG1257|consensus
Probab=31.14 E-value=1.9e+02 Score=23.85 Aligned_cols=99 Identities=15% Similarity=0.142 Sum_probs=62.2
Q ss_pred EEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhc-CCeeEEEEeC--------CcccccccCCCcEEE
Q psy576 49 VLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRT-GRIWILITTE--------LLGRGIDFRTVRLVV 119 (159)
Q Consensus 49 ~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~-~~~~vlv~t~--------~~~~g~~i~~~~~vi 119 (159)
-..|..+.+....+.+.+++-...+.+-.++....-..++++.+.+ .+..++.+=+ .++....+-.-+.++
T Consensus 368 ~~~fAk~~~~~~~L~e~V~~vKPtvLiG~S~~~g~Fteevl~~Ma~~~erPiIFalSNPT~~aECtae~ay~~t~Gr~if 447 (582)
T KOG1257|consen 368 KKPFAKDHEEIKDLEEAVKEVKPTVLIGASGVGGAFTEEVLRAMAKSNERPIIFALSNPTSKAECTAEQAYKWTKGRAIF 447 (582)
T ss_pred hccccccChHHHHHHHHHHhcCCcEEEecccCCccCCHHHHHHHHhcCCCceEEecCCCccccccCHHHHhhhcCCcEEE
Confidence 3456666677777777776655555554455554455556666655 4445555421 234444555566777
Q ss_pred EecCCCCHHHHHHHHhhccCCCCcceEEEEe
Q psy576 120 NYDFPSSAISYIHRIGRAGRGGREGKAVTFF 150 (159)
Q Consensus 120 ~~~~~~~~~~~~q~~GR~~R~g~~g~~~~~~ 150 (159)
--+.|..+-+|- |...+.|+.+.|++|.
T Consensus 448 aSGSPF~pV~~~---gK~~~pgQ~NN~yiFP 475 (582)
T KOG1257|consen 448 ASGSPFPPVEYN---GKVYVPGQGNNAYIFP 475 (582)
T ss_pred ecCCCCCCceeC---CcEecccCCceeEecc
Confidence 778888776655 8888888888888874
No 390
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=30.71 E-value=99 Score=19.22 Aligned_cols=42 Identities=17% Similarity=0.194 Sum_probs=26.4
Q ss_pred HHHHHhCCCceEEEecCCCHHHHHHHHHHHhc-CCeeEEEEeCC
Q psy576 63 YNELIYDGINVDVIHSDRTQKQRDNVVRSFRT-GRIWILITTEL 105 (159)
Q Consensus 63 ~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~-~~~~vlv~t~~ 105 (159)
+++|++.|+++..+... +......+.+.+++ |+++++|.|..
T Consensus 35 a~~L~~~Gi~~~~v~~~-~~~g~~~i~~~i~~~g~idlVIn~~~ 77 (112)
T cd00532 35 SRVLADAGIPVRAVSKR-HEDGEPTVDAAIAEKGKFDVVINLRD 77 (112)
T ss_pred HHHHHHcCCceEEEEec-CCCCCcHHHHHHhCCCCEEEEEEcCC
Confidence 34456677776554321 01012447888999 99999998864
No 391
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=30.61 E-value=1.5e+02 Score=19.04 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=13.7
Q ss_pred CCCCEEEEecchHHHHHHHHHH
Q psy576 45 IEPPVLVFVQSKERAQELYNEL 66 (159)
Q Consensus 45 ~~~~~lif~~~~~~~~~l~~~l 66 (159)
.-.++.|+..+.+.++.+.+.+
T Consensus 35 g~~~i~i~nRt~~ra~~l~~~~ 56 (135)
T PF01488_consen 35 GAKEITIVNRTPERAEALAEEF 56 (135)
T ss_dssp TSSEEEEEESSHHHHHHHHHHH
T ss_pred CCCEEEEEECCHHHHHHHHHHc
Confidence 3344666666666666666666
No 392
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=30.25 E-value=2.5e+02 Score=21.42 Aligned_cols=59 Identities=12% Similarity=0.186 Sum_probs=40.6
Q ss_pred chHHHHHHHHHHHh-C-CCceEEEec----CCCHHHHHHHHHHHhcCCeeEEEEeC--CcccccccC
Q psy576 55 SKERAQELYNELIY-D-GINVDVIHS----DRTQKQRDNVVRSFRTGRIWILITTE--LLGRGIDFR 113 (159)
Q Consensus 55 ~~~~~~~l~~~l~~-~-~~~~~~~~~----~~~~~~r~~~~~~f~~~~~~vlv~t~--~~~~g~~i~ 113 (159)
+..+.+.+.+.+.+ . ...+..+.| +++...-.++++..++....+++-|+ .+..++.-+
T Consensus 112 s~~~~~~~l~~~~~~l~~~d~VvlsGSlP~g~~~d~y~~li~~~~~~g~~vilD~Sg~~L~~~L~~~ 178 (310)
T COG1105 112 SEAELEQFLEQLKALLESDDIVVLSGSLPPGVPPDAYAELIRILRQQGAKVILDTSGEALLAALEAK 178 (310)
T ss_pred CHHHHHHHHHHHHHhcccCCEEEEeCCCCCCCCHHHHHHHHHHHHhcCCeEEEECChHHHHHHHccC
Confidence 45566666666655 2 456788888 66777777788887776777888663 566677765
No 393
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=30.13 E-value=1.2e+02 Score=17.87 Aligned_cols=43 Identities=16% Similarity=0.253 Sum_probs=28.2
Q ss_pred CCCCEEEEecc------hHHHHHHHHHHHhCCCceEEEecCCCHHHHHH
Q psy576 45 IEPPVLVFVQS------KERAQELYNELIYDGINVDVIHSDRTQKQRDN 87 (159)
Q Consensus 45 ~~~~~lif~~~------~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~ 87 (159)
..++++||..+ =..+..+.++|.+.+++...+.=..+++.+..
T Consensus 6 ~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~ 54 (90)
T cd03028 6 KENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQG 54 (90)
T ss_pred ccCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHH
Confidence 34789999764 34677888899888877666553334433333
No 394
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=30.03 E-value=1.6e+02 Score=19.47 Aligned_cols=40 Identities=18% Similarity=0.172 Sum_probs=26.0
Q ss_pred HHHHhC-CCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeC
Q psy576 64 NELIYD-GINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTE 104 (159)
Q Consensus 64 ~~l~~~-~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~ 104 (159)
++|++. |+++..+.++. ..-+..+.+.+++|++..+|.|.
T Consensus 43 ~~L~~~~Gi~v~~vi~~~-~gg~~~i~~~I~~g~i~lVInt~ 83 (142)
T PRK05234 43 GLIQEATGLDVTRLLSGP-LGGDQQIGALIAEGKIDMLIFFR 83 (142)
T ss_pred HHHHhccCCeeEEEEcCC-CCCchhHHHHHHcCceeEEEEec
Confidence 345566 77665443221 11235589999999999999986
No 395
>PRK06936 type III secretion system ATPase; Provisional
Probab=29.95 E-value=3e+02 Score=22.18 Aligned_cols=73 Identities=23% Similarity=0.279 Sum_probs=37.3
Q ss_pred CChHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHH----HhCCC-c--eEEEecCCCHHHHHH-------HHHHHhcCC
Q psy576 31 GSPVQAQDETILLGIEPPVLVFVQSKERAQELYNEL----IYDGI-N--VDVIHSDRTQKQRDN-------VVRSFRTGR 96 (159)
Q Consensus 31 ~~k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l----~~~~~-~--~~~~~~~~~~~~r~~-------~~~~f~~~~ 96 (159)
.+|..++..+... ....++||+---+...++.+.+ .+.+. + +..-+++.++-+|.. +-+-|+...
T Consensus 173 ~GKStLl~~Ia~~-~~~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a~~~a~tiAEyfrd~G 251 (439)
T PRK06936 173 GGKSTLLASLIRS-AEVDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKAGFVATSIAEYFRDQG 251 (439)
T ss_pred CChHHHHHHHhcC-CCCCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 5677776655554 3345667764433334444433 22222 1 333455666766643 455666644
Q ss_pred eeEEEEeC
Q psy576 97 IWILITTE 104 (159)
Q Consensus 97 ~~vlv~t~ 104 (159)
.+||+--+
T Consensus 252 ~~Vll~~D 259 (439)
T PRK06936 252 KRVLLLMD 259 (439)
T ss_pred CCEEEecc
Confidence 45665443
No 396
>PHA03371 circ protein; Provisional
Probab=29.59 E-value=52 Score=23.72 Aligned_cols=25 Identities=36% Similarity=0.505 Sum_probs=16.5
Q ss_pred CHHHHHHHHhhccCCCCcceEEEEe
Q psy576 126 SAISYIHRIGRAGRGGREGKAVTFF 150 (159)
Q Consensus 126 ~~~~~~q~~GR~~R~g~~g~~~~~~ 150 (159)
+--.|.|.+||+--.|..-.-++|.
T Consensus 64 ~r~~~v~fIGRAya~g~~RkF~iyl 88 (240)
T PHA03371 64 SRLAYVKFIGRAYAIGSGRKFVIYL 88 (240)
T ss_pred CcceeeeeeehhhccCCCceEEEEE
Confidence 4556889999998777444444433
No 397
>PLN02461 Probable pyruvate kinase
Probab=29.33 E-value=2.1e+02 Score=23.47 Aligned_cols=32 Identities=9% Similarity=0.010 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHhcCCeeEEEEeCCcccccccC
Q psy576 82 QKQRDNVVRSFRTGRIWILITTELLGRGIDFR 113 (159)
Q Consensus 82 ~~~r~~~~~~f~~~~~~vlv~t~~~~~g~~i~ 113 (159)
+.-+.++++.-+.-...|++||++++-=++-|
T Consensus 278 p~~Qk~II~~c~~~gkPVIvATQmLeSMi~np 309 (511)
T PLN02461 278 FLAQKMMIYKCNLAGKPVVTATQMLESMIKSP 309 (511)
T ss_pred HHHHHHHHHHHHHcCCCeEEeehhHHHHhhCC
Confidence 34455566666665667999999887555544
No 398
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=29.18 E-value=2.3e+02 Score=21.82 Aligned_cols=70 Identities=14% Similarity=0.181 Sum_probs=44.5
Q ss_pred ChHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCc
Q psy576 32 SPVQAQDETILLGIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELL 106 (159)
Q Consensus 32 ~k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~ 106 (159)
+....+-+.+...-+...+.+....+.|+++++.+ +....=+..+++.-.++.+.|.+..+++-.++|+.
T Consensus 111 ~t~~l~seii~e~l~~~~~~vLSGPs~A~EVa~g~-----pta~~vas~d~~~a~~v~~~f~~~~Frvy~~~Dv~ 180 (329)
T COG0240 111 ETGRLLSEIIEEELPDNPIAVLSGPSFAKEVAQGL-----PTAVVVASNDQEAAEKVQALFSSPYFRVYTSTDVI 180 (329)
T ss_pred CCcchHHHHHHHHcCCCeEEEEECccHHHHHhcCC-----CcEEEEecCCHHHHHHHHHHhCCCcEEEEecCchh
Confidence 34555555555433333366777777777776654 23333344567677778888988888888888876
No 399
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=29.17 E-value=1.5e+02 Score=18.59 Aligned_cols=49 Identities=12% Similarity=0.260 Sum_probs=28.5
Q ss_pred CEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCeeE
Q psy576 48 PVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWI 99 (159)
Q Consensus 48 ~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~v 99 (159)
.+++++-..+.+..+.+.+.+.+.+...++.+ ....++.+..++..+.+
T Consensus 57 Dlavv~~~~~~~~~~v~~~~~~g~~~v~~~~g---~~~~~~~~~a~~~gi~v 105 (116)
T PF13380_consen 57 DLAVVCVPPDKVPEIVDEAAALGVKAVWLQPG---AESEELIEAAREAGIRV 105 (116)
T ss_dssp SEEEE-S-HHHHHHHHHHHHHHT-SEEEE-TT---S--HHHHHHHHHTT-EE
T ss_pred CEEEEEcCHHHHHHHHHHHHHcCCCEEEEEcc---hHHHHHHHHHHHcCCEE
Confidence 46666666666777777777778888888887 44455666666666553
No 400
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=29.12 E-value=2.3e+02 Score=20.74 Aligned_cols=65 Identities=18% Similarity=0.180 Sum_probs=35.0
Q ss_pred HHHHHhcCCCCCEEEEecc--------hHHHHHHHHHHHhCCCceEEEecC---CCHHHHHHHHHHHhcCCeeEEE
Q psy576 37 QDETILLGIEPPVLVFVQS--------KERAQELYNELIYDGINVDVIHSD---RTQKQRDNVVRSFRTGRIWILI 101 (159)
Q Consensus 37 l~~~~~~~~~~~~lif~~~--------~~~~~~l~~~l~~~~~~~~~~~~~---~~~~~r~~~~~~f~~~~~~vlv 101 (159)
|.+.+.......+-+|... ....++..+.+++.|+...-+..+ ++.+++.+.++.+++..+.|+-
T Consensus 56 l~eki~l~~~~gV~v~~GGtl~E~a~~q~~~~~yl~~~k~lGf~~IEiSdGti~l~~~~r~~~I~~~~~~Gf~v~~ 131 (244)
T PF02679_consen 56 LKEKIDLAHSHGVYVYPGGTLFEVAYQQGKFDEYLEECKELGFDAIEISDGTIDLPEEERLRLIRKAKEEGFKVLS 131 (244)
T ss_dssp HHHHHHHHHCTT-EEEE-HHHHHHHHHTT-HHHHHHHHHHCT-SEEEE--SSS---HHHHHHHHHHHCCTTSEEEE
T ss_pred HHHHHHHHHHcCCeEeCCcHHHHHHHhcChHHHHHHHHHHcCCCEEEecCCceeCCHHHHHHHHHHHHHCCCEEee
Confidence 4444443334455565542 344555666667778877776554 5788888888888776555443
No 401
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=28.83 E-value=3.1e+02 Score=22.03 Aligned_cols=74 Identities=11% Similarity=0.096 Sum_probs=32.2
Q ss_pred CChHHHHHHHHhcCCCCCEEE-Eec-chHHHHHHHHHHHhCC-C-c--eEEEecCCCHHHHHH-------HHHHHhcCCe
Q psy576 31 GSPVQAQDETILLGIEPPVLV-FVQ-SKERAQELYNELIYDG-I-N--VDVIHSDRTQKQRDN-------VVRSFRTGRI 97 (159)
Q Consensus 31 ~~k~~~l~~~~~~~~~~~~li-f~~-~~~~~~~l~~~l~~~~-~-~--~~~~~~~~~~~~r~~-------~~~~f~~~~~ 97 (159)
.+|..++..+.........++ ++. ...++.++.+.+...+ . + +.+-++..+.-+|.. +.+.|++...
T Consensus 166 ~GKSTLL~~I~~~~~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a~~~a~tiAEyfrd~G~ 245 (433)
T PRK07594 166 VGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTIAEFFRDNGK 245 (433)
T ss_pred CCccHHHHHhcCCCCCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCC
Confidence 566666655554433333322 222 2344433322222211 1 1 234455566655543 4456665444
Q ss_pred eEEEEeC
Q psy576 98 WILITTE 104 (159)
Q Consensus 98 ~vlv~t~ 104 (159)
+||+--+
T Consensus 246 ~VLl~~D 252 (433)
T PRK07594 246 RVVLLAD 252 (433)
T ss_pred cEEEEEe
Confidence 5555433
No 402
>PHA02653 RNA helicase NPH-II; Provisional
Probab=28.74 E-value=3.7e+02 Score=22.97 Aligned_cols=69 Identities=10% Similarity=0.039 Sum_probs=41.4
Q ss_pred CCCEEEEecchHHHHHHHHHHHhC-------CCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCcccccccCCCcEE
Q psy576 46 EPPVLVFVQSKERAQELYNELIYD-------GINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGRGIDFRTVRLV 118 (159)
Q Consensus 46 ~~~~lif~~~~~~~~~l~~~l~~~-------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~g~~i~~~~~v 118 (159)
..+++|-+++++-+..+...+.+. +.++...+|+.+..... -......++++|..+. -.++..+++|
T Consensus 222 ~~~ilvt~PrreLa~qi~~~i~~~vg~~~~~g~~v~v~~Gg~~~~~~~-----t~~k~~~Ilv~T~~L~-l~~L~~v~~V 295 (675)
T PHA02653 222 ERPIVLSLPRVALVRLHSITLLKSLGFDEIDGSPISLKYGSIPDELIN-----TNPKPYGLVFSTHKLT-LNKLFDYGTV 295 (675)
T ss_pred CcEEEEECcHHHHHHHHHHHHHHHhCccccCCceEEEEECCcchHHhh-----cccCCCCEEEEeCccc-ccccccCCEE
Confidence 357999999988887877776541 44567889988732111 1111347889985321 1134456666
Q ss_pred EE
Q psy576 119 VN 120 (159)
Q Consensus 119 i~ 120 (159)
|.
T Consensus 296 VI 297 (675)
T PHA02653 296 II 297 (675)
T ss_pred Ec
Confidence 63
No 403
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=28.67 E-value=2.7e+02 Score=21.37 Aligned_cols=20 Identities=20% Similarity=0.180 Sum_probs=8.6
Q ss_pred HHHHHHHHHHhcCCeeEEEE
Q psy576 83 KQRDNVVRSFRTGRIWILIT 102 (159)
Q Consensus 83 ~~r~~~~~~f~~~~~~vlv~ 102 (159)
+.-.++.+.++....+.+|+
T Consensus 67 ~~v~~~~~~~~~~~~d~Iia 86 (370)
T cd08551 67 SNVDAAVAAYREEGCDGVIA 86 (370)
T ss_pred HHHHHHHHHHHhcCCCEEEE
Confidence 33344444444444444443
No 404
>cd00188 TOPRIM Topoisomerase-primase domain. This is a nucleotidyl transferase/hydrolase domain found in type IA, type IIA and type IIB topoisomerases, bacterial DnaG-type primases, small primase-like proteins from bacteria and archaea, OLD family nucleases from bacterial and archaea, and bacterial DNA repair proteins of the RecR/M family. This domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). This glutamate and two aspartates, cluster together to form a highly acid surface patch. The conserved glutamate may act as a general base in nucleotide polymerization by primases and in strand joining in topoisomerases and, as a general acid in strand cleavage by topisomerases and nucleases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function.
Probab=28.36 E-value=1.1e+02 Score=16.70 Aligned_cols=60 Identities=17% Similarity=0.166 Sum_probs=34.2
Q ss_pred EEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCccccc
Q psy576 49 VLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGRGI 110 (159)
Q Consensus 49 ~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~g~ 110 (159)
.+++|....++..+.+.... +..+....|.... .....+.....+...|+++++.-..|.
T Consensus 2 ~viivEg~~d~~~l~~~~~~-~~~~~~~~G~~~~-~~~~~~~~~~~~~~~v~i~~D~D~~g~ 61 (83)
T cd00188 2 KLIIVEGPSDALALAQAGGY-GGAVVALGGHALN-KTRELLKRLLGEAKEVIIATDADREGE 61 (83)
T ss_pred EEEEEecHHHHHHHHHHcCC-CEEEEEEccEEcH-HHHHHHHHHhcCCCEEEEEcCCChhHH
Confidence 46788888888887776532 3344444444332 223333333333566777877666554
No 405
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=28.21 E-value=1.7e+02 Score=22.79 Aligned_cols=85 Identities=11% Similarity=0.118 Sum_probs=51.5
Q ss_pred chHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCccccccc-----------CCCcEEEEecC
Q psy576 55 SKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGRGIDF-----------RTVRLVVNYDF 123 (159)
Q Consensus 55 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~g~~i-----------~~~~~vi~~~~ 123 (159)
++.+.....++....+-...++...|++............++..|+|.-+.-..+-++ .+.++++.++-
T Consensus 144 t~GDl~~~~q~~~~~~~~~lyfPt~m~~~~~~~~~~~~~~~~ltILvGNSgd~sNnHieaL~~L~~~~~~~~kIivPLsY 223 (360)
T PF07429_consen 144 TRGDLAYFQQRYPRVPASLLYFPTRMDPALTLSEKNKKNKGKLTILVGNSGDPSNNHIEALEALKQQFGDDVKIIVPLSY 223 (360)
T ss_pred EcchHHHHHHHcCCCCceEEEcCCCCchhhhccccccCCCCceEEEEcCCCCCCccHHHHHHHHHHhcCCCeEEEEECCC
Confidence 6666666666664444445566666766433322223344678888876543333222 35678888888
Q ss_pred CCCHHHHHHHHhhccC
Q psy576 124 PSSAISYIHRIGRAGR 139 (159)
Q Consensus 124 ~~~~~~~~q~~GR~~R 139 (159)
|.+-..|.+.+-+.|.
T Consensus 224 g~~n~~Yi~~V~~~~~ 239 (360)
T PF07429_consen 224 GANNQAYIQQVIQAGK 239 (360)
T ss_pred CCchHHHHHHHHHHHH
Confidence 8777788887766654
No 406
>PRK04196 V-type ATP synthase subunit B; Provisional
Probab=28.07 E-value=3.3e+02 Score=22.07 Aligned_cols=73 Identities=12% Similarity=0.069 Sum_probs=36.4
Q ss_pred CChHHHHHHHHhcCCC-----CCEEEEecch---HHHHHHHHHHHhCC-C--ceE-EEecCCCHHHHHH-------HHHH
Q psy576 31 GSPVQAQDETILLGIE-----PPVLVFVQSK---ERAQELYNELIYDG-I--NVD-VIHSDRTQKQRDN-------VVRS 91 (159)
Q Consensus 31 ~~k~~~l~~~~~~~~~-----~~~lif~~~~---~~~~~l~~~l~~~~-~--~~~-~~~~~~~~~~r~~-------~~~~ 91 (159)
-.|..++..+.....- +-++||+.-- +++.++.+.+...+ . .+. .-++.+++-.|.. +-+-
T Consensus 154 ~GKs~L~~~ia~~~~~d~~~~~~v~V~~~iGeRgrEv~e~~~~~~~~~~l~rtvvV~atsd~p~~~R~~a~~~a~tiAEy 233 (460)
T PRK04196 154 LPHNELAAQIARQAKVLGEEENFAVVFAAMGITFEEANFFMEDFEETGALERSVVFLNLADDPAIERILTPRMALTAAEY 233 (460)
T ss_pred CCccHHHHHHHHhhhhccCCCceEEEEEEeccccHHHHHHHHHHHhcCCcceEEEEEEcCCCCHHHHHHHHHHHHHHHHH
Confidence 5677776665553211 1255666543 44444444444443 2 222 3355567766643 5566
Q ss_pred Hh-cCCeeEEEEe
Q psy576 92 FR-TGRIWILITT 103 (159)
Q Consensus 92 f~-~~~~~vlv~t 103 (159)
|+ +...+||+--
T Consensus 234 fr~d~G~~VLli~ 246 (460)
T PRK04196 234 LAFEKGMHVLVIL 246 (460)
T ss_pred HHHhcCCcEEEEE
Confidence 77 4334555543
No 407
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=28.00 E-value=3.4e+02 Score=22.21 Aligned_cols=73 Identities=18% Similarity=0.163 Sum_probs=35.0
Q ss_pred CChHHHHHHHHhcCCCCCEE-EEec---chHHHHHHHHHHHhCCC---c-eEEEecCCCHHHH-------HHHHHHHhcC
Q psy576 31 GSPVQAQDETILLGIEPPVL-VFVQ---SKERAQELYNELIYDGI---N-VDVIHSDRTQKQR-------DNVVRSFRTG 95 (159)
Q Consensus 31 ~~k~~~l~~~~~~~~~~~~l-if~~---~~~~~~~l~~~l~~~~~---~-~~~~~~~~~~~~r-------~~~~~~f~~~ 95 (159)
-+|..+....+....+..++ ||+. ..+++.++.+.+...+. . +..-++..++-.| ..+-+-|+..
T Consensus 152 ~GKt~Lal~~I~~q~~~dv~cV~~~IGer~rev~e~~~~l~~~~~l~~tvvV~atad~~~~~r~~ap~~a~aiAEyfr~~ 231 (485)
T CHL00059 152 TGKTAVATDTILNQKGQNVICVYVAIGQKASSVAQVVTTLQERGAMEYTIVVAETADSPATLQYLAPYTGAALAEYFMYR 231 (485)
T ss_pred CCHHHHHHHHHHhcccCCeEEEEEEecCCchHHHHHHHHhhcccchhceEEEEeCCCCCHHHHHHHHHHHhhHHHHHHHc
Confidence 56666633444333444444 5554 44555566666655431 2 2233444455555 3345556654
Q ss_pred CeeEEEEe
Q psy576 96 RIWILITT 103 (159)
Q Consensus 96 ~~~vlv~t 103 (159)
..+||+--
T Consensus 232 G~~VLlv~ 239 (485)
T CHL00059 232 GRHTLIIY 239 (485)
T ss_pred CCCEEEEE
Confidence 34455543
No 408
>COG0353 RecR Recombinational DNA repair protein (RecF pathway) [DNA replication, recombination, and repair]
Probab=28.00 E-value=2.2e+02 Score=20.12 Aligned_cols=64 Identities=16% Similarity=0.193 Sum_probs=40.0
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCH--------HHHHHHHHHHhcCCe-eEEEEeCCcccc
Q psy576 45 IEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQ--------KQRDNVVRSFRTGRI-WILITTELLGRG 109 (159)
Q Consensus 45 ~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~--------~~r~~~~~~f~~~~~-~vlv~t~~~~~g 109 (159)
+++..|..+.+.+++..+-+.=.-+| .-.+++|.+++ -.....++...++.+ .|++||+.-.+|
T Consensus 77 Rd~~~icVVe~p~Dv~a~E~~~~f~G-~YhVL~G~lspl~gigpe~l~i~~L~~Rl~~~~~~EvIlAtnpTvEG 149 (198)
T COG0353 77 RDKSQLCVVEEPKDVLALEKTGEFRG-LYHVLGGLLSPLDGIGPEDLNIDELLQRLAEGSIKEVILATNPTVEG 149 (198)
T ss_pred cCCceEEEEcchHHHHHHHHhcccCe-eEEEecCccCcccCCCcccccHHHHHHHHhcCCCceEEEecCCCccc
Confidence 45567888888888877765422222 23455554432 233556677788887 899999865544
No 409
>PF14824 Sirohm_synth_M: Sirohaem biosynthesis protein central; PDB: 1KYQ_B.
Probab=27.98 E-value=64 Score=15.26 Aligned_cols=11 Identities=36% Similarity=0.525 Sum_probs=8.0
Q ss_pred cCCeeEEEEeC
Q psy576 94 TGRIWILITTE 104 (159)
Q Consensus 94 ~~~~~vlv~t~ 104 (159)
+|.++|.|+|.
T Consensus 2 ~g~LqI~ISTn 12 (30)
T PF14824_consen 2 RGPLQIAISTN 12 (30)
T ss_dssp -TTEEEEEEES
T ss_pred CCCeEEEEECC
Confidence 46788888885
No 410
>PRK09548 PTS system ascorbate-specific transporter subunits IICB; Provisional
Probab=27.64 E-value=3.8e+02 Score=22.64 Aligned_cols=81 Identities=14% Similarity=0.083 Sum_probs=48.4
Q ss_pred CCCCEEEEecch-----HHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCcccccccCCCcEEE
Q psy576 45 IEPPVLVFVQSK-----ERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGRGIDFRTVRLVV 119 (159)
Q Consensus 45 ~~~~~lif~~~~-----~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~g~~i~~~~~vi 119 (159)
+.-++++-|.+- =-+..+.+.|++.++++..-|.+.+.-. =...+.+++|+|..+...++.+....++
T Consensus 505 k~mKILvaCGsGiGTStmva~kIkk~Lke~GI~veV~~~~Vsev~-------s~~~~aDIIVtt~~La~~i~i~~~~~VI 577 (602)
T PRK09548 505 KPVRILAVCGQGQGSSMMMKMKIKKYLDKRGIPIIMDSCAVNDYK-------GKLETIDIIVCSKHLANEIEFGEGKFVL 577 (602)
T ss_pred cccEEEEECCCCchHHHHHHHHHHHHHHHcCCCeEEEEechHhCc-------ccCCCCCEEEEcccchhhhccCCCceEE
Confidence 344688888742 3445778888889998877787653310 1113457999998777777654434444
Q ss_pred EecCCCCHHHHHH
Q psy576 120 NYDFPSSAISYIH 132 (159)
Q Consensus 120 ~~~~~~~~~~~~q 132 (159)
-+..--+.+++.+
T Consensus 578 gl~N~i~~dei~e 590 (602)
T PRK09548 578 GVQNMLNPNSFGD 590 (602)
T ss_pred EEecCCChHHHHH
Confidence 4433334444433
No 411
>KOG4284|consensus
Probab=27.42 E-value=2e+02 Score=24.70 Aligned_cols=54 Identities=17% Similarity=0.175 Sum_probs=36.3
Q ss_pred CCCEEEEecchHHHHHHHHHHHhC-----CCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeC
Q psy576 46 EPPVLVFVQSKERAQELYNELIYD-----GINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTE 104 (159)
Q Consensus 46 ~~~~lif~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~ 104 (159)
.-+.+|.++|++-+-.+...+.+. |..+..+-||.+-.. +..+-.+.+|+|.|+
T Consensus 93 ~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~-----d~~rlk~~rIvIGtP 151 (980)
T KOG4284|consen 93 HIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKL-----DLIRLKQTRIVIGTP 151 (980)
T ss_pred cceeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhh-----hhhhhhhceEEecCc
Confidence 446888999999888887776543 677888888875542 222233455777775
No 412
>COG2241 CobL Precorrin-6B methylase 1 [Coenzyme metabolism]
Probab=27.26 E-value=1.3e+02 Score=21.48 Aligned_cols=42 Identities=17% Similarity=0.196 Sum_probs=34.4
Q ss_pred CCCChHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHhCCCc
Q psy576 29 GAGSPVQAQDETILLGIEPPVLVFVQSKERAQELYNELIYDGIN 72 (159)
Q Consensus 29 ~~~~k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~~ 72 (159)
-+..+.+.+..++. .+.+++++++....-.++++.|.+.|+.
T Consensus 125 lHgr~~~~l~~~~~--~~~~~vil~~~~~~P~~IA~~L~~~G~~ 166 (210)
T COG2241 125 LHGRPVELLRPLLE--NGRRLVILTPDDFGPAEIAKLLTENGIG 166 (210)
T ss_pred ecCCCHHHHHHHHh--CCceEEEeCCCCCCHHHHHHHHHhCCCC
Confidence 33678888887873 6788999999998899999999988753
No 413
>COG1697 DNA topoisomerase VI, subunit A [DNA replication, recombination, and repair]
Probab=27.04 E-value=3e+02 Score=21.38 Aligned_cols=65 Identities=11% Similarity=0.119 Sum_probs=40.6
Q ss_pred CEEEEecchHHHHHHHHHHHhCCCceEEEecC-CCHHHHHHHHHHHhc-CCeeEEEEeCCccccccc
Q psy576 48 PVLVFVQSKERAQELYNELIYDGINVDVIHSD-RTQKQRDNVVRSFRT-GRIWILITTELLGRGIDF 112 (159)
Q Consensus 48 ~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~~r~~~~~~f~~-~~~~vlv~t~~~~~g~~i 112 (159)
..++.+.+....+++.+.--....++..+|+. .|...-...++.+.. -.+.|.|.|+---.|+.|
T Consensus 184 ~~VlvVEk~avf~rLv~e~~~~k~nailVt~KGqP~raTRrflkrL~eel~lpv~vftDgDPyG~~I 250 (356)
T COG1697 184 KFVLVVEKDAVFQRLVEEGFWEKENAILVTLKGQPDRATRRFLKRLNEELDLPVYVFTDGDPYGWYI 250 (356)
T ss_pred eEEEEEechHHHHHHHHhhhhhhcCeEEEecCCCccHHHHHHHHHHHHHhCCCEEEEecCCCCEEEE
Confidence 34455555444444443222224567777764 566666666777655 578999999998888875
No 414
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=26.90 E-value=2.8e+02 Score=20.90 Aligned_cols=58 Identities=14% Similarity=0.146 Sum_probs=40.8
Q ss_pred CCCEEE---EecchHHHHHHHHHHHhCCC---ceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCcc
Q psy576 46 EPPVLV---FVQSKERAQELYNELIYDGI---NVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLG 107 (159)
Q Consensus 46 ~~~~li---f~~~~~~~~~l~~~l~~~~~---~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~ 107 (159)
++.++| .+.|-.++...++.|++.|. .+...||=++.. .++.+.++.+.-+++|+...
T Consensus 211 Gr~vIIVDDIidTG~Tl~~aa~~Lk~~GA~~V~~~~tHgvfs~~----a~~~l~~~~i~~iv~Tdti~ 274 (301)
T PRK07199 211 GRTPVLVDDIVSTGRTLIEAARQLRAAGAASPDCVVVHALFAGD----AYSALAAAGIARVVSTDTVP 274 (301)
T ss_pred CCEEEEEecccCcHHHHHHHHHHHHHCCCcEEEEEEEeeeCChH----HHHHHHhCCCCEEEEeCCcc
Confidence 344555 45577788888899988765 466778877765 35556566688888888874
No 415
>KOG2380|consensus
Probab=26.83 E-value=3.2e+02 Score=21.53 Aligned_cols=87 Identities=10% Similarity=0.181 Sum_probs=50.5
Q ss_pred ChHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecC-CCH-HHHHHHHHHHhcCCeeEEEEeCCcccc
Q psy576 32 SPVQAQDETILLGIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSD-RTQ-KQRDNVVRSFRTGRIWILITTELLGRG 109 (159)
Q Consensus 32 ~k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~-~~r~~~~~~f~~~~~~vlv~t~~~~~g 109 (159)
.++..+.+++. +...++++|.+....+.+...+--.-.++..+-++ ++- +--...++++-..+.+||.+.++.+--
T Consensus 96 ~~ft~lhdlce--rhpDvvLlctsilsiekilatypfqrlrrgtlfvdvlSvKefek~lfekYLPkdfDIlctHpmfGPk 173 (480)
T KOG2380|consen 96 AKFTLLHDLCE--RHPDVVLLCTSILSIEKILATYPFQRLRRGTLFVDVLSVKEFEKELFEKYLPKDFDILCTHPMFGPK 173 (480)
T ss_pred cccccHHHHHh--cCCCEEEEEehhhhHHHHHHhcCchhhccceeEeeeeecchhHHHHHHHhCccccceEeecCCcCCC
Confidence 34455555444 45668999999998888877652221122222222 111 122345677777899999999887654
Q ss_pred -cccCC--CcEEEE
Q psy576 110 -IDFRT--VRLVVN 120 (159)
Q Consensus 110 -~~i~~--~~~vi~ 120 (159)
+|... +..|+.
T Consensus 174 svnh~wqglpfVyd 187 (480)
T KOG2380|consen 174 SVNHEWQGLPFVYD 187 (480)
T ss_pred cCCCccccCceEEE
Confidence 55432 355554
No 416
>PTZ00066 pyruvate kinase; Provisional
Probab=26.66 E-value=2.2e+02 Score=23.36 Aligned_cols=31 Identities=10% Similarity=0.077 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhcCCeeEEEEeCCcccccccC
Q psy576 83 KQRDNVVRSFRTGRIWILITTELLGRGIDFR 113 (159)
Q Consensus 83 ~~r~~~~~~f~~~~~~vlv~t~~~~~g~~i~ 113 (159)
..+.++++.-+.-...|++||++++-=++-|
T Consensus 295 ~~QK~II~~c~~~gkPVIvATQmLeSMi~np 325 (513)
T PTZ00066 295 LAQKMMISKCNVAGKPVITATQMLESMIKNP 325 (513)
T ss_pred hHHHHHHHHHHHhCCCEEEechhHHHHhhCC
Confidence 4455566665665566999999887555544
No 417
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=26.55 E-value=3.1e+02 Score=21.28 Aligned_cols=72 Identities=8% Similarity=0.037 Sum_probs=43.2
Q ss_pred CChHHHHHHHHhcCCCCCEEEEecch--H---HHHHHHHHHHhCCCceEEEecC---CCHHHHHHHHHHHhcCCeeEEEE
Q psy576 31 GSPVQAQDETILLGIEPPVLVFVQSK--E---RAQELYNELIYDGINVDVIHSD---RTQKQRDNVVRSFRTGRIWILIT 102 (159)
Q Consensus 31 ~~k~~~l~~~~~~~~~~~~lif~~~~--~---~~~~l~~~l~~~~~~~~~~~~~---~~~~~r~~~~~~f~~~~~~vlv~ 102 (159)
.+..+.+.+++... .++++|++... . ..+.+.+.|...++.+..+.+- .+.+.-.+..+.++....+.+|+
T Consensus 14 ~g~~~~l~~~~~~~-~~r~livt~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIa 92 (382)
T cd08187 14 KGTESELGKELKKY-GKKVLLVYGGGSIKKNGLYDRVIASLKEAGIEVVELGGVEPNPRLETVREGIELCKEEKVDFILA 92 (382)
T ss_pred CCHHHHHHHHHHHh-CCEEEEEeCCcHHHhcCcHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 45666676766654 46677776532 1 2356777777766665544332 23445556667777777777775
Q ss_pred e
Q psy576 103 T 103 (159)
Q Consensus 103 t 103 (159)
-
T Consensus 93 i 93 (382)
T cd08187 93 V 93 (382)
T ss_pred e
Confidence 3
No 418
>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.
Probab=26.48 E-value=2.3e+02 Score=19.70 Aligned_cols=51 Identities=20% Similarity=0.173 Sum_probs=32.7
Q ss_pred CChHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHH
Q psy576 31 GSPVQAQDETILLGIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQK 83 (159)
Q Consensus 31 ~~k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 83 (159)
.-..+...++....+...+.||.+. ..+++.+.+...+.++.-+||..+.+
T Consensus 34 ~v~~~~a~~l~~~~~~~~VgVf~~~--~~~~I~~~~~~~~ld~vQLHG~e~~e 84 (197)
T PF00697_consen 34 YVSPDQARELVSAVPPKIVGVFVNQ--SPEEILEIVEELGLDVVQLHGDESPE 84 (197)
T ss_dssp B--HHHHHHHHCCSSSSEEEEESSS---HHHHHHHHHHCTESEEEE-SGG-HH
T ss_pred ccCHHHHHHHHHhcCCCEEEEEcCC--CHHHHHHHHHHcCCCEEEECCCCCHH
Confidence 3445556677766554467777765 55677777777788899999987444
No 419
>cd05796 Ribosomal_P0_like Ribosomal protein L10 family, P0-like protein subfamily; composed of uncharacterized eukaryotic proteins with similarity to the 60S ribosomal protein P0, including the Saccharomyces cerevisiae protein called mRNA turnover protein 4 (MRT4). MRT4 may be involved in mRNA decay. P0 forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. It occupies the L7/L12 stalk of the ribosome. The stalk is known to contain the binding site for elongation factors EF-G and EF-Tu; however, there is disagreement as to whether or not P0 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, P0 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WAS
Probab=26.14 E-value=2.1e+02 Score=19.27 Aligned_cols=59 Identities=12% Similarity=0.173 Sum_probs=38.0
Q ss_pred eEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCcccccccCCCcEEEEecC----CCCHHHHHHHHhhccCC
Q psy576 73 VDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGRGIDFRTVRLVVNYDF----PSSAISYIHRIGRAGRG 140 (159)
Q Consensus 73 ~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~g~~i~~~~~vi~~~~----~~~~~~~~q~~GR~~R~ 140 (159)
++++....++.+-.++++.|+... .++.=++-..+++|.-++ |.+...++|..|-.-+.
T Consensus 80 ~~lift~~dp~~v~k~l~~~~~~~---------~ar~G~iA~~dvvi~~G~~~~~p~~~~~~~~~lgiptki 142 (163)
T cd05796 80 VGLLFTNEPPEEVIEYFDSYSEPD---------FARAGSIATETVTLPEGPLEQFPHSMEPQLRKLGLPTKL 142 (163)
T ss_pred EEEEEECCCHHHHHHHHHHcCCcc---------cccCCCCCCceEEEeCCCCCCCCCCcchHHHHcCCCeEE
Confidence 555555557777777888775533 233334555667776553 56778899999876665
No 420
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=25.91 E-value=1.9e+02 Score=18.67 Aligned_cols=49 Identities=18% Similarity=0.193 Sum_probs=30.7
Q ss_pred hccceeeeecCCC---CChHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHH
Q psy576 18 SNLARMYRETEGA---GSPVQAQDETILLGIEPPVLVFVQSKERAQELYNELI 67 (159)
Q Consensus 18 ~~i~~~~~~~~~~---~~k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~ 67 (159)
.++......+... ......+.+.+.. ..+|++++|.+-+.+-.++.++.
T Consensus 56 ~gl~y~~iPv~~~~~~~~~v~~f~~~~~~-~~~pvL~HC~sG~Rt~~l~al~~ 107 (135)
T TIGR01244 56 AGVTYHHQPVTAGDITPDDVETFRAAIGA-AEGPVLAYCRSGTRSSLLWGFRQ 107 (135)
T ss_pred CCCeEEEeecCCCCCCHHHHHHHHHHHHh-CCCCEEEEcCCChHHHHHHHHHH
Confidence 3555555544432 2244556666664 46889999999888777766543
No 421
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=25.55 E-value=2.2e+02 Score=19.21 Aligned_cols=94 Identities=14% Similarity=0.153 Sum_probs=51.4
Q ss_pred CCCCCEEEEecchH---HHHHHHHHHHhCCCceEEEe--c-CCCHHHHHHHHHHHhcCCeeEEEEeCCcccccccCCCcE
Q psy576 44 GIEPPVLVFVQSKE---RAQELYNELIYDGINVDVIH--S-DRTQKQRDNVVRSFRTGRIWILITTELLGRGIDFRTVRL 117 (159)
Q Consensus 44 ~~~~~~lif~~~~~---~~~~l~~~l~~~~~~~~~~~--~-~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~g~~i~~~~~ 117 (159)
....+++|+|..-. ..-.++++|...++.+..+. . .-...+-...++.+++-...++--.+.......+...++
T Consensus 23 ~~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~dl 102 (169)
T PF03853_consen 23 PKGPRVLILCGPGNNGGDGLVAARHLANRGYNVTVYLVGPPEKLSEDAKQQLEILKKMGIKIIELDSDEDLSEALEPADL 102 (169)
T ss_dssp CTT-EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEEEEEESSSSTSHHHHHHHHHHHHTT-EEESSCCGSGGGHHGSCESE
T ss_pred cCCCeEEEEECCCCChHHHHHHHHHHHHCCCeEEEEEEeccccCCHHHHHHHHHHHhcCCcEeeccccchhhcccccccE
Confidence 35667999998765 45578889988888876632 2 122344455566666655444433333322223336777
Q ss_pred EEEe--c------CCCCHHHHHHHHhhc
Q psy576 118 VVNY--D------FPSSAISYIHRIGRA 137 (159)
Q Consensus 118 vi~~--~------~~~~~~~~~q~~GR~ 137 (159)
||.. + +........+.+...
T Consensus 103 IIDal~G~G~~~~l~~~~~~~i~~iN~~ 130 (169)
T PF03853_consen 103 IIDALFGTGFSGPLRGPIAELIDWINAS 130 (169)
T ss_dssp EEEES-STTGGSCGSTCHHHHHHHHHHH
T ss_pred EEEecccCCCCCCcCHHHHHHHHHHhcc
Confidence 7763 1 123456666655444
No 422
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=24.62 E-value=2.6e+02 Score=20.33 Aligned_cols=61 Identities=18% Similarity=0.222 Sum_probs=35.1
Q ss_pred EEEEecchHHHHHHHHHHHhC--C--CceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCcccccc
Q psy576 49 VLVFVQSKERAQELYNELIYD--G--INVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGRGID 111 (159)
Q Consensus 49 ~lif~~~~~~~~~l~~~l~~~--~--~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~g~~ 111 (159)
+=|.+...+.++.+.+.|+.. | +++. ++ ..-|....++...-..|-.-+||+|++--.|-.
T Consensus 9 VRIiVEGAsDvE~iSkalQr~aLG~eYnIT-is-SIiPTT~~eIA~raaeGADlvlIATDaD~~GRe 73 (290)
T COG4026 9 VRIIVEGASDVEVISKALQRLALGSEYNIT-IS-SIIPTTNVEIAKRAAEGADLVLIATDADRVGRE 73 (290)
T ss_pred EEEEeeccchHHHHHHHHHHhhhcccceeE-EE-eeccCchHHHHHHhhccCCEEEEeecCcchhHH
Confidence 446677777777777777543 1 2221 12 223444455566666676678888877554443
No 423
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=24.54 E-value=1.4e+02 Score=16.59 Aligned_cols=52 Identities=12% Similarity=0.042 Sum_probs=32.5
Q ss_pred CEEEEecc-hHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCeeE
Q psy576 48 PVLVFVQS-KERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWI 99 (159)
Q Consensus 48 ~~lif~~~-~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~v 99 (159)
++.+|... =..+..+.++|.+.+++...+.=...+..+.++.+........+
T Consensus 2 ~v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~~g~~~vP~ 54 (73)
T cd03027 2 RVTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIFPERKAELEERTGSSVVPQ 54 (73)
T ss_pred EEEEEecCCChhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCCCCcCE
Confidence 34555543 46788899999999888777766555555555444443334333
No 424
>KOG0386|consensus
Probab=24.50 E-value=1.9e+02 Score=26.03 Aligned_cols=59 Identities=22% Similarity=0.241 Sum_probs=37.2
Q ss_pred CCCCCEEEEecchHHHHHHHHH-HHhCCCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeC
Q psy576 44 GIEPPVLVFVQSKERAQELYNE-LIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTE 104 (159)
Q Consensus 44 ~~~~~~lif~~~~~~~~~l~~~-l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~ 104 (159)
...+|.+|.++...-..-..+. ..+.. +..+...-++++|.....+.+.|++.||++|-
T Consensus 442 ~~~GP~LvivPlstL~NW~~Ef~kWaPS--v~~i~YkGtp~~R~~l~~qir~gKFnVLlTty 501 (1157)
T KOG0386|consen 442 QMQGPFLIIVPLSTLVNWSSEFPKWAPS--VQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTY 501 (1157)
T ss_pred ccCCCeEEeccccccCCchhhccccccc--eeeeeeeCCHHHHhhHHHHHhcccceeeeeeH
Confidence 4567888888864321111110 01123 33333334799999999999999999999994
No 425
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=24.49 E-value=2.6e+02 Score=20.74 Aligned_cols=46 Identities=22% Similarity=0.190 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhC-CCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCC
Q psy576 58 RAQELYNELIYD-GINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTEL 105 (159)
Q Consensus 58 ~~~~l~~~l~~~-~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~ 105 (159)
.++++.+.+++. +.-+..+|++.+.+ ...+..|-++...++++|..
T Consensus 132 ~~d~~i~~lk~~~d~IIVd~HaeatsE--K~a~~~~ldg~vsaVvGtHt 178 (266)
T TIGR00282 132 VLKELINMLKKDCDLIFVDFHAETTSE--KNAFGMAFDGYVTAVVGTHT 178 (266)
T ss_pred HHHHHHHhhhcCCCEEEEEeCCCCHHH--HHHHHHHhCCCccEEEeCCC
Confidence 344444444432 34567889987553 55688899999999999864
No 426
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=24.44 E-value=3.2e+02 Score=20.82 Aligned_cols=59 Identities=8% Similarity=0.063 Sum_probs=41.3
Q ss_pred CCCCEEE---EecchHHHHHHHHHHHhCCC---ceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCcc
Q psy576 45 IEPPVLV---FVQSKERAQELYNELIYDGI---NVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLG 107 (159)
Q Consensus 45 ~~~~~li---f~~~~~~~~~l~~~l~~~~~---~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~ 107 (159)
.++.++| .+.|-.++.+.++.|++.|. .+...||=++... .+.+.++-+.-+++|+...
T Consensus 217 ~gk~viIVDDIidTG~Tl~~aa~~Lk~~GA~~V~~~~tHgif~~~a----~~~l~~s~i~~iv~TdTi~ 281 (323)
T PRK02458 217 AGKKAILIDDILNTGKTFAEAAKIVEREGATEIYAVASHGLFAGGA----AEVLENAPIKEILVTDSVA 281 (323)
T ss_pred CCCEEEEEcceeCcHHHHHHHHHHHHhCCCCcEEEEEEChhcCchH----HHHHhhCCCCEEEEECCcC
Confidence 4445555 56677888888999987744 5667798877754 4456666677788888763
No 427
>KOG0352|consensus
Probab=24.33 E-value=2.1e+02 Score=23.20 Aligned_cols=83 Identities=10% Similarity=0.087 Sum_probs=55.7
Q ss_pred ccceeeeecCCCCChHHH--HHHHHhcCCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcC-
Q psy576 19 NLARMYRETEGAGSPVQA--QDETILLGIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTG- 95 (159)
Q Consensus 19 ~i~~~~~~~~~~~~k~~~--l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~- 95 (159)
.-...|+-+....+|-.. |..++. .+-+|||.+-..-...=-+.|....+++..+.+.|+-.+|.+++.++..-
T Consensus 35 ~k~DVyVsMPTGaGKSLCyQLPaL~~---~gITIV~SPLiALIkDQiDHL~~LKVp~~SLNSKlSt~ER~ri~~DL~~ek 111 (641)
T KOG0352|consen 35 RKCDVYVSMPTGAGKSLCYQLPALVH---GGITIVISPLIALIKDQIDHLKRLKVPCESLNSKLSTVERSRIMGDLAKEK 111 (641)
T ss_pred ccCcEEEeccCCCchhhhhhchHHHh---CCeEEEehHHHHHHHHHHHHHHhcCCchhHhcchhhHHHHHHHHHHHHhcC
Confidence 344556666665555443 333333 34678887766655555556666678888999999999999999999874
Q ss_pred -CeeEEEEeC
Q psy576 96 -RIWILITTE 104 (159)
Q Consensus 96 -~~~vlv~t~ 104 (159)
.+++|--|+
T Consensus 112 p~~K~LYITP 121 (641)
T KOG0352|consen 112 PTIKMLYITP 121 (641)
T ss_pred CceeEEEEch
Confidence 455665554
No 428
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=24.31 E-value=1.4e+02 Score=16.48 Aligned_cols=44 Identities=14% Similarity=0.188 Sum_probs=29.1
Q ss_pred EEEEec-chHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHH
Q psy576 49 VLVFVQ-SKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSF 92 (159)
Q Consensus 49 ~lif~~-~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f 92 (159)
+.+|.. .=..+..+..+|.+.+++...+.-..+++.+.++.+..
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~ 46 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRS 46 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHh
Confidence 445543 23567888888888888887777766665555554444
No 429
>cd01294 DHOase Dihydroorotase (DHOase) catalyzes the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in the pyrimidine biosynthesis. In contrast to the large polyfunctional CAD proteins of higher organisms, this group of DHOases is monofunctional and mainly dimeric.
Probab=24.30 E-value=98 Score=23.40 Aligned_cols=27 Identities=7% Similarity=0.206 Sum_probs=22.7
Q ss_pred CHHHHHHHHHHHhcCCeeEEEEeCCcc
Q psy576 81 TQKQRDNVVRSFRTGRIWILITTELLG 107 (159)
Q Consensus 81 ~~~~r~~~~~~f~~~~~~vlv~t~~~~ 107 (159)
+.++|+.+++.+++|.++++|+|+-+-
T Consensus 219 ~~~d~~~L~~~l~~G~id~~i~SDHaP 245 (335)
T cd01294 219 RPEDREALRKAATSGHPKFFLGSDSAP 245 (335)
T ss_pred CHHHHHHHHHHHHcCCCCeEEECCCCC
Confidence 367889999999999999888888653
No 430
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=24.29 E-value=2.1e+02 Score=18.51 Aligned_cols=57 Identities=28% Similarity=0.338 Sum_probs=37.6
Q ss_pred CCEEEEecc--hHHHHHHHHHHHhCCCceEEEecCCC-HHHHHHHHHHHh--cCCeeEEEEe
Q psy576 47 PPVLVFVQS--KERAQELYNELIYDGINVDVIHSDRT-QKQRDNVVRSFR--TGRIWILITT 103 (159)
Q Consensus 47 ~~~lif~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~-~~~r~~~~~~f~--~~~~~vlv~t 103 (159)
..+++...+ .+....+...+...+.++.++..++. ++.-...++... .+.++++|..
T Consensus 26 ~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ld~li~~ 87 (167)
T PF00106_consen 26 RVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEVIKRFGPLDILINN 87 (167)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHHHHHHSSESEEEEE
T ss_pred eEEEEeeecccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 345555555 57777888888877777888887754 444455555555 3678888855
No 431
>PF02603 Hpr_kinase_N: HPr Serine kinase N terminus; InterPro: IPR011126 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the N-terminal region of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller. The blades are formed by two N-terminal domains each, and the compact central hub assembles the C-terminal kinase domains []. ; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 1KNX_B 1KO7_A.
Probab=24.25 E-value=57 Score=20.98 Aligned_cols=38 Identities=16% Similarity=0.196 Sum_probs=18.7
Q ss_pred hHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHhCCCc
Q psy576 33 PVQAQDETILLGIEPPVLVFVQSKERAQELYNELIYDGIN 72 (159)
Q Consensus 33 k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~~ 72 (159)
+.+.+.+++. .+-|++||+....--..+.+..++.+.+
T Consensus 70 r~~~l~~l~~--~~~P~iIvt~~~~~p~~l~e~a~~~~ip 107 (127)
T PF02603_consen 70 RKERLEKLFS--YNPPCIIVTRGLEPPPELIELAEKYNIP 107 (127)
T ss_dssp HCCHHHHHCT--TT-S-EEEETTT---HHHHHHHHHCT--
T ss_pred HHHHHHHHhC--CCCCEEEEECcCCCCHHHHHHHHHhCCc
Confidence 3334444444 4567778887777667777766665533
No 432
>KOG3191|consensus
Probab=24.20 E-value=2.7e+02 Score=19.75 Aligned_cols=53 Identities=17% Similarity=0.313 Sum_probs=33.5
Q ss_pred CceEEEecCCCHHHHHHHHHHHhcCCee-EEEEeCCcccccccCCCcEEEEecCCC
Q psy576 71 INVDVIHSDRTQKQRDNVVRSFRTGRIW-ILITTELLGRGIDFRTVRLVVNYDFPS 125 (159)
Q Consensus 71 ~~~~~~~~~~~~~~r~~~~~~f~~~~~~-vlv~t~~~~~g~~i~~~~~vi~~~~~~ 125 (159)
-.+.++..+.++..-+...+--+..+.. ..|.|+.+. |+.-..++++ .+++|.
T Consensus 67 ~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~-~l~~~~VDvL-vfNPPY 120 (209)
T KOG3191|consen 67 PQALYLATDINPEALEATLETARCNRVHIDVVRTDLLS-GLRNESVDVL-VFNPPY 120 (209)
T ss_pred CCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHh-hhccCCccEE-EECCCc
Confidence 4577888888888877777766554433 556666554 6665667744 444553
No 433
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=24.20 E-value=1.8e+02 Score=17.80 Aligned_cols=35 Identities=11% Similarity=0.045 Sum_probs=19.5
Q ss_pred CCCEEEEecch-----HHHHHHHHHHHhCCC---ceEEEecCC
Q psy576 46 EPPVLVFVQSK-----ERAQELYNELIYDGI---NVDVIHSDR 80 (159)
Q Consensus 46 ~~~~lif~~~~-----~~~~~l~~~l~~~~~---~~~~~~~~~ 80 (159)
..+++++|.+. ..+..+...+.+.|+ ++..+.|++
T Consensus 66 ~~~iv~~C~~~g~rs~~a~~~l~~~l~~~G~~~~~v~~l~GG~ 108 (113)
T cd01443 66 VKLAIFYCGSSQGRGPRAARWFADYLRKVGESLPKSYILTGGI 108 (113)
T ss_pred CCEEEEECCCCCcccHHHHHHHHHHHhccCCCCCeEEEECChh
Confidence 35678888752 223344444544553 456667765
No 434
>PRK01221 putative deoxyhypusine synthase; Provisional
Probab=24.02 E-value=2.3e+02 Score=21.63 Aligned_cols=42 Identities=12% Similarity=0.072 Sum_probs=24.9
Q ss_pred HHHHhCCCceEEEecCCCH-HHHHHHHHHHhcCCeeEEEEeCC
Q psy576 64 NELIYDGINVDVIHSDRTQ-KQRDNVVRSFRTGRIWILITTEL 105 (159)
Q Consensus 64 ~~l~~~~~~~~~~~~~~~~-~~r~~~~~~f~~~~~~vlv~t~~ 105 (159)
+.+...+....-+.|.|.+ --|.-+....+++-.+++|+|-.
T Consensus 49 ~ml~d~~~ifL~~tg~mvs~Glr~ii~~Li~~~~VD~iVtTga 91 (312)
T PRK01221 49 EMISDADLRFLSFTANLVSTGLRGLIADLIKRGLFNVVITTCG 91 (312)
T ss_pred HHHcCCCeEEEEecchhHHHHHHHHHHHHHHcCCeeEEEeCCC
Confidence 3333334345567888844 44444444466688889998853
No 435
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=23.91 E-value=3.4e+02 Score=20.88 Aligned_cols=71 Identities=10% Similarity=0.061 Sum_probs=32.7
Q ss_pred ChHHHHHHHHhcCCCCCEEEEecc-hH---HHHHHHHHHHhCCCceEEEec---CCCHHHHHHHHHHHhcCCeeEEEE
Q psy576 32 SPVQAQDETILLGIEPPVLVFVQS-KE---RAQELYNELIYDGINVDVIHS---DRTQKQRDNVVRSFRTGRIWILIT 102 (159)
Q Consensus 32 ~k~~~l~~~~~~~~~~~~lif~~~-~~---~~~~l~~~l~~~~~~~~~~~~---~~~~~~r~~~~~~f~~~~~~vlv~ 102 (159)
+....+.+.+.....++++|.+.. .. ..+.+.+.|.+.++.+..+.+ .-+.+.-.+..+.++..+.+.+|+
T Consensus 10 g~~~~l~~~l~~~g~~~~liv~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIa 87 (370)
T cd08192 10 GAIKELPAECAELGIKRPLIVTDPGLAALGLVARVLALLEDAGLAAALFDEVPPNPTEAAVEAGLAAYRAGGCDGVIA 87 (370)
T ss_pred CHHHHHHHHHHHcCCCeEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEE
Confidence 334445555544332455554432 11 245555666555554443322 123334444555555555555554
No 436
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=23.85 E-value=3.1e+02 Score=20.45 Aligned_cols=72 Identities=14% Similarity=0.053 Sum_probs=36.6
Q ss_pred CChHHHHHHHH-hcCCCCCEEEEe---cchHHHHHHHHHHHhCCC--c--eEEEecCCCHHHH-------HHHHHHHhcC
Q psy576 31 GSPVQAQDETI-LLGIEPPVLVFV---QSKERAQELYNELIYDGI--N--VDVIHSDRTQKQR-------DNVVRSFRTG 95 (159)
Q Consensus 31 ~~k~~~l~~~~-~~~~~~~~lif~---~~~~~~~~l~~~l~~~~~--~--~~~~~~~~~~~~r-------~~~~~~f~~~ 95 (159)
-+|..+..+.+ .....+-+.||+ ...+++.++.+.+...+. + +..-+++.++.+| ..+-+.|+..
T Consensus 80 ~GKt~L~l~~i~~~~~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~a~~~a~aiAE~fr~~ 159 (274)
T cd01132 80 TGKTAIAIDTIINQKGKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYLAPYTGCAMGEYFMDN 159 (274)
T ss_pred CCccHHHHHHHHHhcCCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHHHHHHHHHHHHHHHHC
Confidence 45666533444 332233344666 355666777777665532 2 2233455566665 3345566664
Q ss_pred CeeEEEE
Q psy576 96 RIWILIT 102 (159)
Q Consensus 96 ~~~vlv~ 102 (159)
..+||+-
T Consensus 160 G~~Vlvl 166 (274)
T cd01132 160 GKHALII 166 (274)
T ss_pred CCCEEEE
Confidence 3445543
No 437
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=23.82 E-value=3.8e+02 Score=21.38 Aligned_cols=74 Identities=15% Similarity=0.134 Sum_probs=32.3
Q ss_pred CChHHHHHHHHhcCCCCCEEEEe--cchHHHHHHHH-HHHhCCC-ce--EEEecCCCHHHHHH-------HHHHHhcCCe
Q psy576 31 GSPVQAQDETILLGIEPPVLVFV--QSKERAQELYN-ELIYDGI-NV--DVIHSDRTQKQRDN-------VVRSFRTGRI 97 (159)
Q Consensus 31 ~~k~~~l~~~~~~~~~~~~lif~--~~~~~~~~l~~-~l~~~~~-~~--~~~~~~~~~~~r~~-------~~~~f~~~~~ 97 (159)
.+|..++..+.........++.+ ...+++.++.+ .+.+.+. +. ..-+++.++-.|.. +.+.|++...
T Consensus 151 ~GKTtLl~~I~~~~~~~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~~~a~~iAEyfrd~G~ 230 (418)
T TIGR03498 151 VGKSTLLSMLARNTDADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAAYTATAIAEYFRDQGK 230 (418)
T ss_pred CChHHHHHHHhCCCCCCEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 45666654444432323332222 23344444433 3333332 22 23344555555543 4455665444
Q ss_pred eEEEEeC
Q psy576 98 WILITTE 104 (159)
Q Consensus 98 ~vlv~t~ 104 (159)
+||+--+
T Consensus 231 ~Vll~~D 237 (418)
T TIGR03498 231 DVLLLMD 237 (418)
T ss_pred CEEEecc
Confidence 5555443
No 438
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=23.53 E-value=42 Score=19.71 Aligned_cols=14 Identities=36% Similarity=0.750 Sum_probs=9.5
Q ss_pred CHHHHHHHHh-hccC
Q psy576 126 SAISYIHRIG-RAGR 139 (159)
Q Consensus 126 ~~~~~~q~~G-R~~R 139 (159)
.-.++.||.| ++||
T Consensus 34 tn~Ei~Qr~GkkvGR 48 (77)
T PRK01026 34 TNAEIFQRIGKKVGR 48 (77)
T ss_pred HHHHHHHHHhHHhhh
Confidence 3566788887 5565
No 439
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=23.37 E-value=3e+02 Score=20.08 Aligned_cols=65 Identities=18% Similarity=0.174 Sum_probs=38.9
Q ss_pred HHHHHHhcCCCCCEEEEecc--------hHHHHHHHHHHHhCCCceEEEecC---CCHHHHHHHHHHHhcCCeeEE
Q psy576 36 AQDETILLGIEPPVLVFVQS--------KERAQELYNELIYDGINVDVIHSD---RTQKQRDNVVRSFRTGRIWIL 100 (159)
Q Consensus 36 ~l~~~~~~~~~~~~lif~~~--------~~~~~~l~~~l~~~~~~~~~~~~~---~~~~~r~~~~~~f~~~~~~vl 100 (159)
.|.+.+.....+.+-+|... +...++..+.+++.|+.+.-+..+ ++.+++.+.++.+++..+.++
T Consensus 42 ~l~eki~la~~~~V~v~~GGtl~E~~~~q~~~~~Yl~~~k~lGf~~IEiS~G~~~i~~~~~~rlI~~~~~~g~~v~ 117 (237)
T TIGR03849 42 IVKEKIEMYKDYGIKVYPGGTLFEIAHSKGKFDEYLNECDELGFEAVEISDGSMEISLEERCNLIERAKDNGFMVL 117 (237)
T ss_pred HHHHHHHHHHHcCCeEeCCccHHHHHHHhhhHHHHHHHHHHcCCCEEEEcCCccCCCHHHHHHHHHHHHhCCCeEe
Confidence 34444443333344455542 233444455566668877777655 688888888888887666554
No 440
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=23.31 E-value=4.1e+02 Score=21.61 Aligned_cols=19 Identities=26% Similarity=0.043 Sum_probs=8.0
Q ss_pred HHHHHHH-hCCCceEEEecC
Q psy576 61 ELYNELI-YDGINVDVIHSD 79 (159)
Q Consensus 61 ~l~~~l~-~~~~~~~~~~~~ 79 (159)
.++++++ ..+.++.++--.
T Consensus 236 tiAEyfr~~~G~~VLl~~Ds 255 (466)
T TIGR01040 236 TTAEYLAYQCEKHVLVILTD 255 (466)
T ss_pred HHHHHHHHhcCCcEEEeccC
Confidence 3444444 234444444433
No 441
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=23.16 E-value=3.9e+02 Score=21.25 Aligned_cols=70 Identities=13% Similarity=0.057 Sum_probs=42.9
Q ss_pred CChHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCeeEEE
Q psy576 31 GSPVQAQDETILLGIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILI 101 (159)
Q Consensus 31 ~~k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv 101 (159)
..|...|.+.+......-.+.-|+--++=+.++..|.+.|+++...+|.. .++-...+++....+..+++
T Consensus 42 ~~~Ta~l~~~L~~~GA~v~~~~~np~stqd~vaaaL~~~gi~v~a~~~~~-~~ey~~~~~~~l~~~p~~ii 111 (406)
T TIGR00936 42 TVETAVLIETLVAGGAEVAWTSCNPLSTQDDVAAALAKAGIPVFAWRGET-NEEYYWAIEQVLDHEPNIII 111 (406)
T ss_pred hHHHHHHHHHHHHcCCEEEEEccCCccccHHHHHHHHhCCceEEEecCCC-HHHHHHHHHHHhcCCCCEEE
Confidence 45666677666654333344445544556678888888898887777764 44555555555555555544
No 442
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=23.14 E-value=4.1e+02 Score=21.48 Aligned_cols=73 Identities=16% Similarity=0.110 Sum_probs=35.7
Q ss_pred CChHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHH----hCCC-c--eEEEecCCCHHHHHH-------HHHHHhcCC
Q psy576 31 GSPVQAQDETILLGIEPPVLVFVQSKERAQELYNELI----YDGI-N--VDVIHSDRTQKQRDN-------VVRSFRTGR 96 (159)
Q Consensus 31 ~~k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~----~~~~-~--~~~~~~~~~~~~r~~-------~~~~f~~~~ 96 (159)
.+|-.++..+... ....++||+---+...++.+.+. ..+. + +..-+++.++-+|.. +-+-|++..
T Consensus 173 ~GKSTLL~~I~~~-~~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~~~A~tiAEyfrd~G 251 (444)
T PRK08972 173 VGKSVLLGMMTRG-TTADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGCETATTIAEYFRDQG 251 (444)
T ss_pred CChhHHHHHhccC-CCCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 5677766555543 33346666643333344443332 2222 2 223355556666643 455666544
Q ss_pred eeEEEEeC
Q psy576 97 IWILITTE 104 (159)
Q Consensus 97 ~~vlv~t~ 104 (159)
.+||+--+
T Consensus 252 ~~VLl~~D 259 (444)
T PRK08972 252 LNVLLLMD 259 (444)
T ss_pred CCEEEEEc
Confidence 45555443
No 443
>PLN02522 ATP citrate (pro-S)-lyase
Probab=23.07 E-value=4.7e+02 Score=22.15 Aligned_cols=70 Identities=11% Similarity=0.102 Sum_probs=47.9
Q ss_pred HHHHHHhcCC-CCCEEEEecchHHHHHHHHHHHhCCCc-eEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCc
Q psy576 36 AQDETILLGI-EPPVLVFVQSKERAQELYNELIYDGIN-VDVIHSDRTQKQRDNVVRSFRTGRIWILITTELL 106 (159)
Q Consensus 36 ~l~~~~~~~~-~~~~lif~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~ 106 (159)
.+.+.+.... -.-.+||++-..-.+.+.+.+.+.+++ +.+++++.+.....++.+.-++...+ ||..++.
T Consensus 68 tv~eA~~~~~~~~~~vifvp~~~a~da~lEa~~a~GIk~~VIiteGfpe~d~~~l~~~Ar~~g~r-lIGPNc~ 139 (608)
T PLN02522 68 SIEAACKAHPTADVFINFASFRSAAASSMEALKQPTIRVVAIIAEGVPESDTKQLIAYARANNKV-VIGPATV 139 (608)
T ss_pred hHHHHHHhCCCCcEEEEeCChHHhHHHHHHHHhhCCCCEEEEECCCCChhhHHHHHHHHHHcCCE-EECCCCC
Confidence 3555665542 345778999988889999988877764 66778889887766666666665543 4444443
No 444
>cd05563 PTS_IIB_ascorbate PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=22.57 E-value=1.7e+02 Score=16.90 Aligned_cols=78 Identities=15% Similarity=0.109 Sum_probs=42.1
Q ss_pred CEEEEecch-HHHH----HHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCcccccccCCCcEEEEec
Q psy576 48 PVLVFVQSK-ERAQ----ELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGRGIDFRTVRLVVNYD 122 (159)
Q Consensus 48 ~~lif~~~~-~~~~----~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~g~~i~~~~~vi~~~ 122 (159)
++++.|++- .... .+.+.+.+.++...+-+..... ....+.+++++|.-+......|... ++..+
T Consensus 1 kilvvC~~G~~tS~ll~~kl~~~f~~~~i~~~~~~~~~~~---------~~~~~~DlIisT~~l~~~~~~~~~~-~i~v~ 70 (86)
T cd05563 1 KILAVCGSGLGSSLMLKMNVEKVLKELGIEAEVEHTDLGS---------AKASSADIIVTSKDLASLLADGGAK-VIGLK 70 (86)
T ss_pred CEEEECCCCccHHHHHHHHHHHHHHHCCCcEEEEEecccc---------cCCCCCCEEEEchhhhhhhccCCce-EEEEe
Confidence 367788653 2333 4455555555544443333222 1134577899987666544444554 34444
Q ss_pred CCCCHHHHHHHHh
Q psy576 123 FPSSAISYIHRIG 135 (159)
Q Consensus 123 ~~~~~~~~~q~~G 135 (159)
+-.+..++.|.+.
T Consensus 71 ~~l~~~d~~~~~~ 83 (86)
T cd05563 71 NIMDKNEIKEKLL 83 (86)
T ss_pred ccCCHHHHHHHHH
Confidence 5556777777664
No 445
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=22.54 E-value=3.3e+02 Score=20.20 Aligned_cols=67 Identities=15% Similarity=0.111 Sum_probs=42.8
Q ss_pred eeecCCCCChHHH--HHHHHhcCCCCCEEEEecchHHHHH----HHHHHHhCCCceEEEecCCCHHHHHHHHH
Q psy576 24 YRETEGAGSPVQA--QDETILLGIEPPVLVFVQSKERAQE----LYNELIYDGINVDVIHSDRTQKQRDNVVR 90 (159)
Q Consensus 24 ~~~~~~~~~k~~~--l~~~~~~~~~~~~lif~~~~~~~~~----l~~~l~~~~~~~~~~~~~~~~~~r~~~~~ 90 (159)
...+...++|-.. +...+....+.++=|.+.+..-|.+ +...+...|+.+..+++++++.+|.+.++
T Consensus 94 laEm~TGEGKTli~~l~a~~~AL~G~~V~vvT~NdyLA~RD~~~~~~~y~~LGlsv~~~~~~~~~~~r~~~Y~ 166 (266)
T PF07517_consen 94 LAEMKTGEGKTLIAALPAALNALQGKGVHVVTSNDYLAKRDAEEMRPFYEFLGLSVGIITSDMSSEERREAYA 166 (266)
T ss_dssp EEEESTTSHHHHHHHHHHHHHHTTSS-EEEEESSHHHHHHHHHHHHHHHHHTT--EEEEETTTEHHHHHHHHH
T ss_pred eEEecCCCCcHHHHHHHHHHHHHhcCCcEEEeccHHHhhccHHHHHHHHHHhhhccccCccccCHHHHHHHHh
Confidence 4445555676655 3344455677888888887765554 44455666999999999999887765543
No 446
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=22.50 E-value=2.8e+02 Score=19.41 Aligned_cols=71 Identities=14% Similarity=0.063 Sum_probs=35.8
Q ss_pred hHHHHHHHHhcC--CCCCEEEEecchHHHHHHHHHHHhCCCceE--EEecCCC-HHHHHHHHHHHhcCCeeEEEEeC
Q psy576 33 PVQAQDETILLG--IEPPVLVFVQSKERAQELYNELIYDGINVD--VIHSDRT-QKQRDNVVRSFRTGRIWILITTE 104 (159)
Q Consensus 33 k~~~l~~~~~~~--~~~~~lif~~~~~~~~~l~~~l~~~~~~~~--~~~~~~~-~~~r~~~~~~f~~~~~~vlv~t~ 104 (159)
..+-+.+.+... .++++++.+. ......+.+.|.+.|..+. .++...+ ........+.+..+..++++-|+
T Consensus 110 ~~~~l~~~l~~~~~~~~~ili~~~-~~~~~~l~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~~~~~~~d~ivftS 185 (249)
T PRK05928 110 ESSELLLELPELLLKGKRVLYLRG-NGGREVLGDTLEERGAEVDECEVYERVPPKLDGAELLARLQSGEVDAVIFTS 185 (249)
T ss_pred cChHHHHhChhhhcCCCEEEEECC-CCCHHHHHHHHHHCCCEEeEEEEEEeeCCCCChHHHHHHHHhCCCCEEEECC
Confidence 334444444332 3445555544 4557788888888765433 2232221 11223334455556677666654
No 447
>PLN02363 phosphoribosylanthranilate isomerase
Probab=22.39 E-value=3.2e+02 Score=20.07 Aligned_cols=51 Identities=16% Similarity=0.227 Sum_probs=33.4
Q ss_pred hHHHHHHHHhcCC---CCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHH
Q psy576 33 PVQAQDETILLGI---EPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQR 85 (159)
Q Consensus 33 k~~~l~~~~~~~~---~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r 85 (159)
..+...++....+ ..++.||++.. .+++.+.++..+..+.-+||..+++..
T Consensus 84 s~e~a~~I~~~l~~~~~~~VgVfv~~~--~~~I~~~~~~~~ld~VQLHG~e~~~~~ 137 (256)
T PLN02363 84 SLSVAKEISQVAREGGAKPVGVFVDDD--ANTILRAADSSDLELVQLHGNGSRAAF 137 (256)
T ss_pred CHHHHHHHHHhccccCccEEEEEeCCC--HHHHHHHHHhcCCCEEEECCCCCHHHH
Confidence 3455555555432 23578887654 357777777778889999998776543
No 448
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=22.35 E-value=3.4e+02 Score=20.35 Aligned_cols=44 Identities=23% Similarity=0.325 Sum_probs=21.0
Q ss_pred HHHHHHHHhCCCceEEEecC------CCHHHHHHHHHHHhc---CCeeEEEEe
Q psy576 60 QELYNELIYDGINVDVIHSD------RTQKQRDNVVRSFRT---GRIWILITT 103 (159)
Q Consensus 60 ~~l~~~l~~~~~~~~~~~~~------~~~~~r~~~~~~f~~---~~~~vlv~t 103 (159)
.++.+++.+.|.+-.++-|. ++.+||.++++...+ |+..|++.+
T Consensus 28 ~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~ 80 (299)
T COG0329 28 RRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGV 80 (299)
T ss_pred HHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEec
Confidence 34444444444444444332 355566665555433 445555544
No 449
>KOG0952|consensus
Probab=22.34 E-value=2.9e+02 Score=25.11 Aligned_cols=51 Identities=20% Similarity=0.302 Sum_probs=38.4
Q ss_pred CCEEEEecchHHHHHHHHHHHhC----CCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeC
Q psy576 47 PPVLVFVQSKERAQELYNELIYD----GINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTE 104 (159)
Q Consensus 47 ~~~lif~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~ 104 (159)
-+++-..+++.-|.++.+.+.++ |+.+..++|++.-..-+ +. +.+|||+|+
T Consensus 165 fKiVYIaPmKALa~Em~~~~~kkl~~~gi~v~ELTGD~ql~~te-i~------~tqiiVTTP 219 (1230)
T KOG0952|consen 165 FKIVYIAPMKALAAEMVDKFSKKLAPLGISVRELTGDTQLTKTE-IA------DTQIIVTTP 219 (1230)
T ss_pred ceEEEEechHHHHHHHHHHHhhhcccccceEEEecCcchhhHHH-HH------hcCEEEecc
Confidence 37888899999999999888655 78899999987543222 22 467888886
No 450
>PF03599 CdhD: CO dehydrogenase/acetyl-CoA synthase delta subunit; InterPro: IPR016041 This entry represents a conserved region predicted to form a TIM alpha/beta barrel, and is found in the delta subunit of a number of CO dehydrogenase/acetyl-CoA synthase enzymes.; PDB: 2H9A_B 2YCL_B 4DJF_E 4DJD_C 4DJE_C.
Probab=22.27 E-value=4e+02 Score=21.08 Aligned_cols=67 Identities=9% Similarity=0.013 Sum_probs=28.6
Q ss_pred HHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhc-CCeeEEE
Q psy576 34 VQAQDETILLGIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRT-GRIWILI 101 (159)
Q Consensus 34 ~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~-~~~~vlv 101 (159)
.+.+.+.++...+++.|++..+.++.+++.....+.+.++. +.+..+-+.-...-..+.+ |-.++++
T Consensus 108 ~evl~aale~~~~~kpLL~aAt~eNyk~m~~lA~~y~~pl~-v~sp~Dln~lk~Ln~~l~~~Gv~dIVl 175 (386)
T PF03599_consen 108 PEVLKAALEACAGKKPLLYAATEENYKAMAALAKEYGHPLI-VSSPIDLNLLKQLNIKLTELGVKDIVL 175 (386)
T ss_dssp HHHHHHHHHHTTTS--EEEEEBTTTHHHHHHHHHHCT-EEE-EE-SSCHHHHHHHHHHHHTTT-GGEEE
T ss_pred HHHHHHHHHHhCcCCcEEeEcCHHHHHHHHHHHHHcCCeEE-EEecccHHHHHHHHHHHHhcCcccEEe
Confidence 34444444444455555666666555555555544444332 2332333333333333333 4444555
No 451
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=22.17 E-value=3.6e+02 Score=20.54 Aligned_cols=36 Identities=11% Similarity=0.078 Sum_probs=15.8
Q ss_pred chHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHH
Q psy576 55 SKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVR 90 (159)
Q Consensus 55 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~ 90 (159)
+.+.+++..+.+++.+.+..+-=||-+.-+-.+.+.
T Consensus 62 ~~~~v~~~~~~~~~~~~D~IIavGGGS~iD~aK~ia 97 (351)
T cd08170 62 TRAEIERLAEIARDNGADVVIGIGGGKTLDTAKAVA 97 (351)
T ss_pred CHHHHHHHHHHHhhcCCCEEEEecCchhhHHHHHHH
Confidence 334444444444444444444444444444444443
No 452
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.09 E-value=2.4e+02 Score=18.40 Aligned_cols=59 Identities=20% Similarity=0.235 Sum_probs=40.0
Q ss_pred hccceeeeecCCC---CChHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHH
Q psy576 18 SNLARMYRETEGA---GSPVQAQDETILLGIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQR 85 (159)
Q Consensus 18 ~~i~~~~~~~~~~---~~k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r 85 (159)
-.+...++.+... +.-++...+.+.. ..+|++.||.|-..+..++..-.. .++|+..+-
T Consensus 57 aGl~y~~iPV~~~~iT~~dV~~f~~Al~e-aegPVlayCrsGtRs~~ly~~~~~--------~~gm~~de~ 118 (130)
T COG3453 57 AGLTYTHIPVTGGGITEADVEAFQRALDE-AEGPVLAYCRSGTRSLNLYGLGEL--------DGGMSRDEI 118 (130)
T ss_pred cCCceEEeecCCCCCCHHHHHHHHHHHHH-hCCCEEeeecCCchHHHHHHHHHH--------hcCCCHHHH
Confidence 3566777777663 3344445555655 678999999999999998886542 266766543
No 453
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=21.97 E-value=3.7e+02 Score=20.61 Aligned_cols=70 Identities=11% Similarity=0.089 Sum_probs=31.2
Q ss_pred ChHHHHHHHHhcCCCCCEEEEecchH-----HHHHHHHHHHhCCCceEEEec---CCCHHHHHHHHHHHhcCCeeEEEE
Q psy576 32 SPVQAQDETILLGIEPPVLVFVQSKE-----RAQELYNELIYDGINVDVIHS---DRTQKQRDNVVRSFRTGRIWILIT 102 (159)
Q Consensus 32 ~k~~~l~~~~~~~~~~~~lif~~~~~-----~~~~l~~~l~~~~~~~~~~~~---~~~~~~r~~~~~~f~~~~~~vlv~ 102 (159)
+....+.+++... +++++|.+.... ..+.+.+.|.+.+..+..+.+ .-+.+.-.+..+.+++.+.+++|+
T Consensus 12 g~l~~l~~~~~~~-g~r~lvVt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIa 89 (357)
T cd08181 12 NCVEKHGEELAAL-GKRALIVTGKSSAKKNGSLDDVTKALEELGIEYEIFDEVEENPSLETIMEAVEIAKKFNADFVIG 89 (357)
T ss_pred CHHHHHHHHHHHc-CCEEEEEeCCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEE
Confidence 3444444444432 245555443221 124455555555554433322 123333444555555555555554
No 454
>PRK08576 hypothetical protein; Provisional
Probab=21.84 E-value=3.3e+02 Score=21.92 Aligned_cols=53 Identities=13% Similarity=0.149 Sum_probs=39.0
Q ss_pred EEEecchHHHHHHHHHHHhC----CCceEEEecCCCHHHHHHHHHH-HhcCCeeEEEE
Q psy576 50 LVFVQSKERAQELYNELIYD----GINVDVIHSDRTQKQRDNVVRS-FRTGRIWILIT 102 (159)
Q Consensus 50 lif~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~-f~~~~~~vlv~ 102 (159)
-|.+.++++|+++...+... ++.+..++|+-..++-...++. +....+.|++-
T Consensus 3 ~~~~r~~kda~a~~~~~~~~~~~~~~~v~~l~g~r~~~~~~~~~~~~~~~~~~~~~l~ 60 (438)
T PRK08576 3 NIIVRSRKDAKAVKAINERFYGGWNLEVSSLGGARKFEEVEDNLEEALEDDYFPILLL 60 (438)
T ss_pred EEEEeecccHHHHHHHHhhhcCCCceEEEecCCCCCHHHHHHHHHhhcccCCceEEEe
Confidence 46788899999998887654 4578899999888888777766 44445555553
No 455
>COG0313 Predicted methyltransferases [General function prediction only]
Probab=21.64 E-value=3.4e+02 Score=20.34 Aligned_cols=63 Identities=8% Similarity=0.121 Sum_probs=32.8
Q ss_pred EEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCcccccccCC
Q psy576 50 LVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGRGIDFRT 114 (159)
Q Consensus 50 lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~g~~i~~ 114 (159)
+|+|...+....+...+.- ..+...+|.-...+....++..+..|+. |-+-+++.--++.-|.
T Consensus 33 ~iaaEDTR~t~~LL~~~~I-~~~~is~h~hne~~~~~~li~~l~~g~~-valVSDAG~P~ISDPG 95 (275)
T COG0313 33 VIAAEDTRVTRKLLSHLGI-KTPLISYHEHNEKEKLPKLIPLLKKGKS-VALVSDAGTPLISDPG 95 (275)
T ss_pred EEEEeccHHHHHHHHHhCC-CCceecccCCcHHHHHHHHHHHHhcCCe-EEEEecCCCCcccCcc
Confidence 4777777766666655532 1224445554344444445555555543 4555555554554443
No 456
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=21.61 E-value=3.9e+02 Score=20.73 Aligned_cols=73 Identities=12% Similarity=0.097 Sum_probs=41.4
Q ss_pred CChHHHHHHHHhcCCCCCEEEEecch-H---HHHHHHHHHHhCCCceEEEecCC---CHHHHHHHHHHHhcCCeeEEEEe
Q psy576 31 GSPVQAQDETILLGIEPPVLVFVQSK-E---RAQELYNELIYDGINVDVIHSDR---TQKQRDNVVRSFRTGRIWILITT 103 (159)
Q Consensus 31 ~~k~~~l~~~~~~~~~~~~lif~~~~-~---~~~~l~~~l~~~~~~~~~~~~~~---~~~~r~~~~~~f~~~~~~vlv~t 103 (159)
.+....|.+.+.....++++|.+... . ..+.+...|++.++.+..+.+-. +.+.-.+..+.++....+++|+-
T Consensus 15 ~g~l~~l~~~~~~~g~~~~lvvtd~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIai 94 (382)
T PRK10624 15 RGAIGALTDEVKRRGFKKALIVTDKTLVKCGVVAKVTDVLDAAGLAYEIYDGVKPNPTIEVVKEGVEVFKASGADYLIAI 94 (382)
T ss_pred cCHHHHHHHHHHhcCCCEEEEEeCcchhhCcchHHHHHHHHHCCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEe
Confidence 45666677776654435666665431 1 34556677776666665443322 23444556666666666766653
No 457
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=21.58 E-value=3.5e+02 Score=20.12 Aligned_cols=45 Identities=16% Similarity=0.118 Sum_probs=22.3
Q ss_pred HHHHHHHHHhCCCceEEEecC------CCHHHHHHHHHHHhc---CCeeEEEEe
Q psy576 59 AQELYNELIYDGINVDVIHSD------RTQKQRDNVVRSFRT---GRIWILITT 103 (159)
Q Consensus 59 ~~~l~~~l~~~~~~~~~~~~~------~~~~~r~~~~~~f~~---~~~~vlv~t 103 (159)
..++.+++.+.|++-.++-|. ++.+||.++++...+ ++..|++.+
T Consensus 28 l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv 81 (296)
T TIGR03249 28 YRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGV 81 (296)
T ss_pred HHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEec
Confidence 334444444455544444432 456666666654432 445555544
No 458
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=21.47 E-value=3.9e+02 Score=20.68 Aligned_cols=71 Identities=8% Similarity=-0.005 Sum_probs=33.8
Q ss_pred ChHHHHHHHHhcCCCCCEEEEecc-hH---HHHHHHHHHHhCCCceEEEecC---CCHHHHHHHHHHHhcCCeeEEEE
Q psy576 32 SPVQAQDETILLGIEPPVLVFVQS-KE---RAQELYNELIYDGINVDVIHSD---RTQKQRDNVVRSFRTGRIWILIT 102 (159)
Q Consensus 32 ~k~~~l~~~~~~~~~~~~lif~~~-~~---~~~~l~~~l~~~~~~~~~~~~~---~~~~~r~~~~~~f~~~~~~vlv~ 102 (159)
+.++.+.+.+.....++++|.+.. .. ..+.+.+.|.+.+..+..+.+- -+.+.-.+..+.++....+++|+
T Consensus 14 g~l~~l~~~l~~~g~~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIa 91 (377)
T cd08188 14 GALKLAGRYARRLGAKKVLLVSDPGVIKAGWVDRVIESLEEAGLEYVVFSDVSPNPRDEEVMAGAELYLENGCDVIIA 91 (377)
T ss_pred CHHHHHHHHHHHcCCCeEEEEeCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEE
Confidence 445555555554333455554432 11 2345666666555554433321 12333444555565555566654
No 459
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=21.47 E-value=4.9e+02 Score=23.12 Aligned_cols=63 Identities=10% Similarity=0.029 Sum_probs=43.7
Q ss_pred CCCCChHHH--HHHHHhcCCCCCEEEEecchHHHHHHHHHH----HhCCCceEEEecCCCHHHHHHHHH
Q psy576 28 EGAGSPVQA--QDETILLGIEPPVLVFVQSKERAQELYNEL----IYDGINVDVIHSDRTQKQRDNVVR 90 (159)
Q Consensus 28 ~~~~~k~~~--l~~~~~~~~~~~~lif~~~~~~~~~l~~~l----~~~~~~~~~~~~~~~~~~r~~~~~ 90 (159)
...++|... +...+....+..+-|.+.+..-|.+-+++. ...|+.++.+.+++++.+|...+.
T Consensus 97 ~TGEGKTL~a~l~ayl~aL~G~~VhVvT~NdyLA~RD~e~m~pvy~~LGLsvg~i~~~~~~~err~aY~ 165 (870)
T CHL00122 97 KTGEGKTLVATLPAYLNALTGKGVHIVTVNDYLAKRDQEWMGQIYRFLGLTVGLIQEGMSSEERKKNYL 165 (870)
T ss_pred cCCCCchHHHHHHHHHHHhcCCceEEEeCCHHHHHHHHHHHHHHHHHcCCceeeeCCCCChHHHHHhcC
Confidence 333555443 344455667788889998877666655544 445899999999999998877654
No 460
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=21.44 E-value=2.1e+02 Score=17.51 Aligned_cols=41 Identities=29% Similarity=0.400 Sum_probs=25.2
Q ss_pred HHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCC
Q psy576 63 YNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTEL 105 (159)
Q Consensus 63 ~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~ 105 (159)
+++|++.++++..+.--. .....+.+.+++++.+++|.+..
T Consensus 36 ~~~l~~~gi~~~~v~~~~--~~~~~i~~~i~~~~id~vIn~~~ 76 (110)
T cd01424 36 AKYLQEAGIPVEVVNKVS--EGRPNIVDLIKNGEIQLVINTPS 76 (110)
T ss_pred HHHHHHcCCeEEEEeecC--CCchhHHHHHHcCCeEEEEECCC
Confidence 345666777654432210 12245788888999998888754
No 461
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=21.31 E-value=2.1e+02 Score=17.42 Aligned_cols=41 Identities=24% Similarity=0.242 Sum_probs=23.2
Q ss_pred CChHHHHHHHHhcCCCCCEEEEecch-HHHHHHHHHHHhCCCce
Q psy576 31 GSPVQAQDETILLGIEPPVLVFVQSK-ERAQELYNELIYDGINV 73 (159)
Q Consensus 31 ~~k~~~l~~~~~~~~~~~~lif~~~~-~~~~~l~~~l~~~~~~~ 73 (159)
++-.+.+..+-. .+.++++++|+. ...+.+.+.|...|+++
T Consensus 17 pga~e~l~~L~~--~g~~~~~lTNns~~s~~~~~~~L~~~Gi~~ 58 (101)
T PF13344_consen 17 PGAVEALDALRE--RGKPVVFLTNNSSRSREEYAKKLKKLGIPV 58 (101)
T ss_dssp TTHHHHHHHHHH--TTSEEEEEES-SSS-HHHHHHHHHHTTTT-
T ss_pred cCHHHHHHHHHH--cCCCEEEEeCCCCCCHHHHHHHHHhcCcCC
Confidence 344555555554 345666666654 44477777787777654
No 462
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=21.26 E-value=3.6e+02 Score=20.24 Aligned_cols=24 Identities=17% Similarity=0.325 Sum_probs=10.9
Q ss_pred CCHHHHHHHHHHHhc---CCeeEEEEe
Q psy576 80 RTQKQRDNVVRSFRT---GRIWILITT 103 (159)
Q Consensus 80 ~~~~~r~~~~~~f~~---~~~~vlv~t 103 (159)
++.+||.++++...+ |+..|++.+
T Consensus 58 Lt~eEr~~v~~~~~~~~~grvpvi~Gv 84 (309)
T cd00952 58 LTWEEKQAFVATVVETVAGRVPVFVGA 84 (309)
T ss_pred CCHHHHHHHHHHHHHHhCCCCCEEEEe
Confidence 345555555544322 444444443
No 463
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=21.13 E-value=1.6e+02 Score=20.87 Aligned_cols=25 Identities=16% Similarity=0.029 Sum_probs=21.7
Q ss_pred HHHHHHHHhCCCceEEEecCCCHHH
Q psy576 60 QELYNELIYDGINVDVIHSDRTQKQ 84 (159)
Q Consensus 60 ~~l~~~l~~~~~~~~~~~~~~~~~~ 84 (159)
.+..++++++++++.++.+||.+--
T Consensus 79 Kef~e~ike~di~fiVvSsGm~~fI 103 (220)
T COG4359 79 KEFVEWIKEHDIPFIVVSSGMDPFI 103 (220)
T ss_pred HHHHHHHHHcCCCEEEEeCCCchHH
Confidence 5778889999999999999999853
No 464
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=21.08 E-value=5.9e+02 Score=22.87 Aligned_cols=63 Identities=13% Similarity=0.037 Sum_probs=43.3
Q ss_pred cCCCCChHHH--HHHHHhcCCCCCEEEEecchHHHHHHHHH----HHhCCCceEEEecCCCHHHHHHHH
Q psy576 27 TEGAGSPVQA--QDETILLGIEPPVLVFVQSKERAQELYNE----LIYDGINVDVIHSDRTQKQRDNVV 89 (159)
Q Consensus 27 ~~~~~~k~~~--l~~~~~~~~~~~~lif~~~~~~~~~l~~~----l~~~~~~~~~~~~~~~~~~r~~~~ 89 (159)
+...++|... |...+....+..+-|.+.+..-|.+-+++ ....|+.++.+.+++++.+|...+
T Consensus 105 M~TGEGKTL~atlpaylnAL~GkgVhVVTvNdYLA~RDae~m~~vy~~LGLtvg~i~~~~~~~err~aY 173 (939)
T PRK12902 105 MKTGEGKTLVATLPSYLNALTGKGVHVVTVNDYLARRDAEWMGQVHRFLGLSVGLIQQDMSPEERKKNY 173 (939)
T ss_pred ecCCCChhHHHHHHHHHHhhcCCCeEEEeCCHHHHHhHHHHHHHHHHHhCCeEEEECCCCChHHHHHhc
Confidence 3334555544 55666666778888888877655554444 455599999999999998887654
No 465
>PF02698 DUF218: DUF218 domain; InterPro: IPR003848 This domain of unknown function is found in several uncharacterised proteins.; PDB: 3CA8_A.
Probab=20.94 E-value=2.5e+02 Score=18.22 Aligned_cols=40 Identities=15% Similarity=0.196 Sum_probs=21.6
Q ss_pred ChHHHHHHHHhcCCCCCEEEEec------chHHHHHHHHHHHhCCCc
Q psy576 32 SPVQAQDETILLGIEPPVLVFVQ------SKERAQELYNELIYDGIN 72 (159)
Q Consensus 32 ~k~~~l~~~~~~~~~~~~lif~~------~~~~~~~l~~~l~~~~~~ 72 (159)
.+++.-.++... ...+.|+|+. ...+++.+.+++.+.|++
T Consensus 24 ~R~~~a~~L~~~-g~~~~il~SGg~~~~~~~~ea~~~~~~l~~~gvp 69 (155)
T PF02698_consen 24 ERLDEAARLYKA-GYAPRILFSGGYGHGDGRSEAEAMRDYLIELGVP 69 (155)
T ss_dssp HHHHHHHHHHH--HHT--EEEE--SSTTHTS-HHHHHHHHHHHT---
T ss_pred HHHHHHHHHHhc-CCCCeEEECCCCCCCCCCCHHHHHHHHHHhcccc
Confidence 345555556554 2344567777 567888999988877654
No 466
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=20.80 E-value=2.9e+02 Score=18.91 Aligned_cols=49 Identities=27% Similarity=0.318 Sum_probs=29.8
Q ss_pred cCCCCCEEEEecc--------hHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcC
Q psy576 43 LGIEPPVLVFVQS--------KERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTG 95 (159)
Q Consensus 43 ~~~~~~~lif~~~--------~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~ 95 (159)
....++++|+.++ .++++.+.+.| ++++ +.|+...|.-..++++.|...
T Consensus 74 ~~~~~~v~IvSNsaGs~~d~~~~~a~~~~~~l---gIpv-l~h~~kKP~~~~~i~~~~~~~ 130 (168)
T PF09419_consen 74 QFGKDRVLIVSNSAGSSDDPDGERAEALEKAL---GIPV-LRHRAKKPGCFREILKYFKCQ 130 (168)
T ss_pred HCCCCeEEEEECCCCcccCccHHHHHHHHHhh---CCcE-EEeCCCCCccHHHHHHHHhhc
Confidence 3333479999997 34555555544 3332 456665566667788888643
No 467
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=20.73 E-value=2.3e+02 Score=23.85 Aligned_cols=44 Identities=16% Similarity=0.055 Sum_probs=30.5
Q ss_pred HHHHHhc---CCCCCEEEEecchHHHHHHHHHHHhCCCc-eEEEecCC
Q psy576 37 QDETILL---GIEPPVLVFVQSKERAQELYNELIYDGIN-VDVIHSDR 80 (159)
Q Consensus 37 l~~~~~~---~~~~~~lif~~~~~~~~~l~~~l~~~~~~-~~~~~~~~ 80 (159)
+.+++.. ..++++++||.+--.+...+-.|+..|.+ +..+.|++
T Consensus 211 l~~~~~~~Gi~~~~~VVvYC~sG~rAa~~~~~L~~lG~~~V~~YdGsw 258 (610)
T PRK09629 211 MPEILRDLGITPDKEVITHCQTHHRSGFTYLVAKALGYPRVKAYAGSW 258 (610)
T ss_pred HHHHHHHcCCCCCCCEEEECCCChHHHHHHHHHHHcCCCCcEEeCCCH
Confidence 4444432 35668999999887777777777777875 66677763
No 468
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=20.68 E-value=3.9e+02 Score=20.37 Aligned_cols=59 Identities=12% Similarity=0.107 Sum_probs=40.4
Q ss_pred CCCCEEE---EecchHHHHHHHHHHHhCCC---ceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCcc
Q psy576 45 IEPPVLV---FVQSKERAQELYNELIYDGI---NVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLG 107 (159)
Q Consensus 45 ~~~~~li---f~~~~~~~~~l~~~l~~~~~---~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~ 107 (159)
.++.++| .+.|-.+..+.++.|++.|. .+..-||=++... ++.+.++.+.=+++|+...
T Consensus 216 ~Gr~viIVDDIidTG~Tl~~aa~~Lk~~GA~~V~~~~THgvfs~~a----~~~l~~s~i~~iv~Tdtip 280 (319)
T PRK04923 216 QGKTCVLVDDLVDTAGTLCAAAAALKQRGALKVVAYITHPVLSGPA----VDNINNSQLDELVVTDTIP 280 (319)
T ss_pred CCCEEEEEecccCchHHHHHHHHHHHHCCCCEEEEEEECcccCchH----HHHHhhCCCCEEEEeCCcc
Confidence 3344555 55677788888999988754 4566798887643 4455566677788888874
No 469
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=20.58 E-value=2.2e+02 Score=24.93 Aligned_cols=80 Identities=25% Similarity=0.231 Sum_probs=46.3
Q ss_pred ceeeeecCCCCChHHH-----HHHHHhcCCCC-----CEEEEecchH----HHHHHHHHHHhCCCceEEEecCCCHHHHH
Q psy576 21 ARMYRETEGAGSPVQA-----QDETILLGIEP-----PVLVFVQSKE----RAQELYNELIYDGINVDVIHSDRTQKQRD 86 (159)
Q Consensus 21 ~~~~~~~~~~~~k~~~-----l~~~~~~~~~~-----~~lif~~~~~----~~~~l~~~l~~~~~~~~~~~~~~~~~~r~ 86 (159)
.+.........+|.+. +..++...... .+|-..+=+. --..+..++...|+++..-||++++.+|.
T Consensus 38 ~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~ 117 (814)
T COG1201 38 ENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQ 117 (814)
T ss_pred CceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHHHHHHHHHHHHcCCccceecCCCChHHhh
Confidence 3555555555666655 33444442111 2333333222 22344555566699999999999998765
Q ss_pred HHHHHHhcCCeeEEEEeC
Q psy576 87 NVVRSFRTGRIWILITTE 104 (159)
Q Consensus 87 ~~~~~f~~~~~~vlv~t~ 104 (159)
+ +...-.+|||+|+
T Consensus 118 r----~~~~PPdILiTTP 131 (814)
T COG1201 118 K----MLKNPPHILITTP 131 (814)
T ss_pred h----ccCCCCcEEEeCh
Confidence 4 3344578999996
No 470
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=20.50 E-value=3.5e+02 Score=19.72 Aligned_cols=99 Identities=16% Similarity=0.123 Sum_probs=49.0
Q ss_pred ccceeeeecCCCCChHHHHHHHHhcCCCCCEEEEec-chHHHHHHHHHHHhC-CCceEEEec--CCCHHHHHHHHHHHhc
Q psy576 19 NLARMYRETEGAGSPVQAQDETILLGIEPPVLVFVQ-SKERAQELYNELIYD-GINVDVIHS--DRTQKQRDNVVRSFRT 94 (159)
Q Consensus 19 ~i~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lif~~-~~~~~~~l~~~l~~~-~~~~~~~~~--~~~~~~r~~~~~~f~~ 94 (159)
.+.+....-...-+|.- |+.++...-+.++.++.. ..+....+...+... .-.+.++.+ .++....+-.+..+.+
T Consensus 49 ~l~h~lf~GPPG~GKTT-LA~IIA~e~~~~~~~~sg~~i~k~~dl~~il~~l~~~~ILFIDEIHRlnk~~qe~LlpamEd 127 (233)
T PF05496_consen 49 ALDHMLFYGPPGLGKTT-LARIIANELGVNFKITSGPAIEKAGDLAAILTNLKEGDILFIDEIHRLNKAQQEILLPAMED 127 (233)
T ss_dssp ---EEEEESSTTSSHHH-HHHHHHHHCT--EEEEECCC--SCHHHHHHHHT--TT-EEEECTCCC--HHHHHHHHHHHHC
T ss_pred CcceEEEECCCccchhH-HHHHHHhccCCCeEeccchhhhhHHHHHHHHHhcCCCcEEEEechhhccHHHHHHHHHHhcc
Confidence 34454444444456643 455554434455555544 234444555555433 234666644 4778888888888899
Q ss_pred CCeeEEEEeCCcccc--cccCCCcEE
Q psy576 95 GRIWILITTELLGRG--IDFRTVRLV 118 (159)
Q Consensus 95 ~~~~vlv~t~~~~~g--~~i~~~~~v 118 (159)
+.+.++|.....++. +++|..+.|
T Consensus 128 ~~idiiiG~g~~ar~~~~~l~~FTli 153 (233)
T PF05496_consen 128 GKIDIIIGKGPNARSIRINLPPFTLI 153 (233)
T ss_dssp SEEEEEBSSSSS-BEEEEE----EEE
T ss_pred CeEEEEeccccccceeeccCCCceEe
Confidence 999999876555444 444555533
No 471
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=20.50 E-value=4.4e+02 Score=20.95 Aligned_cols=71 Identities=10% Similarity=-0.001 Sum_probs=41.0
Q ss_pred CCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecC-CCH------------HHHHHHHHHHhcCCeeEEEEeCC---cc
Q psy576 44 GIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSD-RTQ------------KQRDNVVRSFRTGRIWILITTEL---LG 107 (159)
Q Consensus 44 ~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~------------~~r~~~~~~f~~~~~~vlv~t~~---~~ 107 (159)
..+.++.|+. ....+..+.+.|.+.|+.+..+-.. -++ .+..++.+..++.+..++++++. ++
T Consensus 309 l~Gkrvai~~-~~~~~~~l~~~l~elGm~v~~~~~~~~~~~~~~~~~~~~~~~D~~~l~~~i~~~~~dliig~s~~k~~A 387 (432)
T TIGR01285 309 LGGKKVAIAA-EPDLLAAWATFFTSMGAQIVAAVTTTGSPLLQKLPVETVVIGDLEDLEDLACAAGADLLITNSHGRALA 387 (432)
T ss_pred hCCCEEEEEc-CHHHHHHHHHHHHHCCCEEEEEEeCCCCHHHHhCCcCcEEeCCHHHHHHHHhhcCCCEEEECcchHHHH
Confidence 3456676665 4467888889898888866444322 111 12244455555566777777643 44
Q ss_pred cccccCCC
Q psy576 108 RGIDFRTV 115 (159)
Q Consensus 108 ~g~~i~~~ 115 (159)
..+++|.+
T Consensus 388 ~~l~ip~i 395 (432)
T TIGR01285 388 QRLALPLV 395 (432)
T ss_pred HHcCCCEE
Confidence 44555543
No 472
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=20.47 E-value=1.7e+02 Score=16.05 Aligned_cols=30 Identities=20% Similarity=0.048 Sum_probs=18.4
Q ss_pred EEEEecchHHHHHHHHHHHhCCCceEEEec
Q psy576 49 VLVFVQSKERAQELYNELIYDGINVDVIHS 78 (159)
Q Consensus 49 ~lif~~~~~~~~~l~~~l~~~~~~~~~~~~ 78 (159)
.+..+.+.-++..+...|.+.|+++.....
T Consensus 2 ~l~~~~~~~ea~~i~~~L~~~gI~~~v~~~ 31 (67)
T PF09413_consen 2 KLYTAGDPIEAELIKGLLEENGIPAFVKNE 31 (67)
T ss_dssp EEEEE--HHHHHHHHHHHHHTT--EE--S-
T ss_pred EEEEcCCHHHHHHHHHHHHhCCCcEEEECC
Confidence 356777888899999999998887655433
No 473
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=20.37 E-value=3.7e+02 Score=19.92 Aligned_cols=16 Identities=13% Similarity=0.129 Sum_probs=8.1
Q ss_pred HHHHHhcCCeeEEEEe
Q psy576 88 VVRSFRTGRIWILITT 103 (159)
Q Consensus 88 ~~~~f~~~~~~vlv~t 103 (159)
..++|.+.+.+.++|+
T Consensus 54 L~~a~~d~~i~aI~~~ 69 (282)
T cd07025 54 LNAAFADPEIKAIWCA 69 (282)
T ss_pred HHHHhhCCCCCEEEEc
Confidence 3344555555555554
No 474
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=20.32 E-value=2e+02 Score=16.91 Aligned_cols=69 Identities=13% Similarity=0.069 Sum_probs=38.0
Q ss_pred ChHHHHHHHHhcCCCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhc--CCeeEEEEeC
Q psy576 32 SPVQAQDETILLGIEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRT--GRIWILITTE 104 (159)
Q Consensus 32 ~k~~~l~~~~~~~~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~--~~~~vlv~t~ 104 (159)
.-...+..++.. .+-..+..+.+.+ +..+.+.+....+.++...++...-.++++.+++ ....+++.|+
T Consensus 9 ~~~~~l~~~l~~-~~~~~v~~~~~~~---~~~~~~~~~~~d~iiid~~~~~~~~~~~~~~i~~~~~~~~ii~~t~ 79 (112)
T PF00072_consen 9 EIRELLEKLLER-AGYEEVTTASSGE---EALELLKKHPPDLIIIDLELPDGDGLELLEQIRQINPSIPIIVVTD 79 (112)
T ss_dssp HHHHHHHHHHHH-TTEEEEEEESSHH---HHHHHHHHSTESEEEEESSSSSSBHHHHHHHHHHHTTTSEEEEEES
T ss_pred HHHHHHHHHHHh-CCCCEEEEECCHH---HHHHHhcccCceEEEEEeeeccccccccccccccccccccEEEecC
Confidence 334445555552 2221334555544 4445555666677777777776666667776655 3455665553
No 475
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=20.27 E-value=1.9e+02 Score=21.52 Aligned_cols=46 Identities=20% Similarity=0.361 Sum_probs=32.6
Q ss_pred ceEEE---ecCCCHHHHHHHHHHHhc----CCeeEEEEeCCcccccccCCCcEEE
Q psy576 72 NVDVI---HSDRTQKQRDNVVRSFRT----GRIWILITTELLGRGIDFRTVRLVV 119 (159)
Q Consensus 72 ~~~~~---~~~~~~~~r~~~~~~f~~----~~~~vlv~t~~~~~g~~i~~~~~vi 119 (159)
.+.++ +.++++..+.++.+.+++ +...|+++|..++.-..+ ++.|+
T Consensus 156 ~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~--~d~v~ 208 (293)
T COG1131 156 ELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEEL--CDRVI 208 (293)
T ss_pred CEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHh--CCEEE
Confidence 44444 668899999888877654 336899999988876665 45333
No 476
>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]
Probab=20.12 E-value=5.1e+02 Score=21.45 Aligned_cols=64 Identities=13% Similarity=-0.004 Sum_probs=44.9
Q ss_pred CCCCEEEEecchHHHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhcCCeeEEEEeCCcccccc
Q psy576 45 IEPPVLVFVQSKERAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRTGRIWILITTELLGRGID 111 (159)
Q Consensus 45 ~~~~~lif~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~t~~~~~g~~ 111 (159)
++++++|+.+..-++-...-...+.|.-...+.+++..++ +...+...+.+++|+.+...++..
T Consensus 64 kGDrV~iymp~~pe~~~a~LA~~riGAI~~~vf~~f~~~a---l~~Ri~d~~~k~vit~d~~~~~gk 127 (528)
T COG0365 64 KGDRVAIYMPNSPEAVIALLATARIGAIPAVVSPGLSAEA---VADRIADLGPKVLIADDGTFRNGK 127 (528)
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCCEEeecccCCCHHH---HHHHHHccCCCEEEEecccccccc
Confidence 5778999999877555544444455665667777777653 566788889999998876655554
No 477
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=20.11 E-value=3.5e+02 Score=20.26 Aligned_cols=36 Identities=11% Similarity=0.247 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhCCCceEEEecCCCHHHHHHHHHHHhc
Q psy576 58 RAQELYNELIYDGINVDVIHSDRTQKQRDNVVRSFRT 94 (159)
Q Consensus 58 ~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 94 (159)
.+-++++.+.+.|+.+.+++|+ +...|...++.+++
T Consensus 149 ~al~ly~~l~~~G~kIf~VSgR-~e~~r~aT~~NL~k 184 (275)
T TIGR01680 149 ETLKNYNKLVSLGFKIIFLSGR-LKDKQAVTEANLKK 184 (275)
T ss_pred HHHHHHHHHHHCCCEEEEEeCC-chhHHHHHHHHHHH
Confidence 3445566666666666666665 33445555555443
Done!